PeakID (cmd=annotatePeaks.pl merged_SE_SSE2_SM9.bed hg19 -size given -wig ./20171108_112-H3_p5_swig_treat_afterfiting_all.scaled.wig ./20171108_190-H3_p5_swig_treat_afterfiting_all.scaled.wig ./20171108_283-H3_p5_swig_treat_afterfiting_all.scaled.wig ./CORL88_7_21_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H1436_H3K27ac_p5_swig_treat_afterfiting_all.scaled.wig ./H1436_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H1963_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H196_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H196_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H2081_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H2081_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H209_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H345_H3K27ac_p5_swig_treat_afterfiting_all.scaled.wig ./H841_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H841_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_COR-L311_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_COR-L311_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H1048-cas9_sgNeg_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H1048-cas9_sgPOU2F3_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H128_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H128_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H146_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H146_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H211_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H211_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H446_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H446_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H510A_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H510A_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H524_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H524_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H526_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H526_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H69_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H69_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H82_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H82_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H889_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H889_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./dms79_ab4729_chip_0825_0828_15c_S13_p5_swig_treat_afterfiting_all.scaled.wig ./h187_ab4729_chip_0825_0828_15c_S15_p5_swig_treat_afterfiting_all.scaled.wig ./h69_ab4729_chip_0610_0714_15c_S27_p5_swig_treat_afterfiting_all.scaled.wig ./hcc33_ab4729_chip_0825_0828_17c_S17_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h1963_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h209_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h2171_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_shp77_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_h526_ab4729_chip_0505_12c_S19_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_h82_ab4729_chip_0331_12c_S3_hg19_p5_swig_treat_afterfiting_all.scaled.wig)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type	./20171108_112-H3_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./20171108_190-H3_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./20171108_283-H3_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./CORL88_7_21_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./H1436_H3K27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./H1436_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./H1963_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./H196_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./H196_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./H2081_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./H2081_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./H209_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./H345_H3K27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./H841_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./H841_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_COR-L311_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_COR-L311_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H1048-cas9_sgNeg_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H1048-cas9_sgPOU2F3_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H128_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H128_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H146_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H146_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H211_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H211_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H446_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H446_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H510A_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H510A_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H524_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H524_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H526_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H526_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H69_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H69_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H82_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H82_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H889_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./Vakoc_H889_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./dms79_ab4729_chip_0825_0828_15c_S13_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./h187_ab4729_chip_0825_0828_15c_S15_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./h69_ab4729_chip_0610_0714_15c_S27_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./hcc33_ab4729_chip_0825_0828_17c_S17_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./st_hw_h1963_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./st_hw_h209_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./st_hw_h2171_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./st_hw_shp77_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./ts_hw_h526_ab4729_chip_0505_12c_S19_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./ts_hw_h82_ab4729_chip_0331_12c_S3_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp
6712	chr6	32860604	32864606	+	0	NA	non-coding (NR_037177, exon 1 of 2)	non-coding (NR_037177, exon 1 of 2)	652	NR_037177	100294145	Hs.559456	NR_037177		LOC100294145	-	uncharacterized LOC100294145	ncRNA	nan	4.004	nan	5.511	5.303	2.656	3.318	1.738	0.281	2.362	1.047	12.113	13.760	2.132	0.127	4.863	6.592	6.026	nan	nan	11.172	5.842	2.340	4.748	5.691	4.495	5.024	5.225	5.664	8.318	7.589	3.174	5.279	6.193	7.296	1.339	2.672	3.651	1.608	8.339	5.312	2.053	3.533	3.318	12.113	3.570	2.404	2.204	1.226
5006	chr20	52550159	52566437	+	0	NA	Intergenic	Intergenic	-66050	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo	0.968	1.319	0.945	0.124	0.376	0.306	0.352	0.802	0.169	0.097	0.082	0.133	0.284	4.737	0.164	0.979	nan	0.725	1.354	0.550	0.611	0.099	0.049	0.378	0.327	0.386	0.621	0.507	0.548	1.347	0.917	0.617	1.159	0.036	0.037	0.329	0.932	0.222	0.380	0.206	0.210	0.006	0.196	0.352	0.133	0.095	0.025	0.450	0.305
3509	chr17	65317152	65332171	+	0	NA	Intergenic	LTR7B|LTR|ERV1	38082	NM_174871	5718	Hs.4295	NM_002816	ENSG00000197170	PSMD12	Rpn5|p55	proteasome 26S subunit, non-ATPase 12	protein-coding	1.328	nan	1.058	0.193	0.275	0.124	0.145	0.115	0.208	0.211	0.110	0.451	0.322	0.053	0.129	1.030	0.826	0.907	0.823	0.311	0.395	1.284	0.427	0.828	0.766	0.199	nan	0.477	0.593	0.920	0.559	0.343	0.418	0.231	0.259	2.741	6.908	0.908	0.624	0.059	0.112	0.037	0.169	0.145	0.451	0.045	0.061	0.145	1.432
7652	chr8	38359320	38373148	+	0	NA	Intergenic	Mam_R4|LINE|Dong-R4	19946	NM_207412	389649	Hs.546586	NM_207412	ENSG00000196166	C8orf86	-	chromosome 8 open reading frame 86	protein-coding	0.729	1.670	nan	3.498	0.552	0.255	0.869	0.153	0.147	0.454	0.253	0.878	0.698	0.116	0.113	0.496	0.637	0.261	0.452	1.497	1.509	6.148	1.309	0.473	0.447	0.210	0.425	1.158	1.101	0.636	0.522	0.173	0.502	0.898	0.992	0.314	0.730	1.333	0.785	0.032	0.491	0.146	0.735	0.869	0.878	0.197	0.059	0.800	0.135
4863	chr20	16641449	16653520	+	0	NA	Intergenic	Intergenic	-63125	NM_003092	6629	Hs.280378	NM_003092	ENSG00000125870	SNRPB2	Msl1|U2B''	small nuclear ribonucleoprotein polypeptide B2	protein-coding	2.117	nan	1.037	0.212	0.169	0.133	0.094	0.142	0.216	0.077	0.144	0.070	0.278	0.036	0.074	0.594	0.476	0.161	0.169	0.326	0.438	0.138	0.108	0.242	0.356	2.236	2.758	0.324	0.322	5.541	6.539	0.185	0.280	0.135	0.122	2.399	6.823	0.383	0.372	0.028	0.044	0.047	0.172	0.094	0.070	1.507	0.076	0.049	4.109
4628	chr2	180870298	180888765	+	0	NA	Intergenic	Intergenic	-7751	NM_020943	57703	Hs.311363	NM_020943	ENSG00000163510	CWC22	EIF4GL|NCM|fSAPb	CWC22 spliceosome associated protein homolog	protein-coding	1.576	1.518	1.282	1.860	1.068	0.564	0.499	1.086	0.095	0.332	0.251	1.441	2.121	0.374	0.081	1.028	0.783	1.205	1.542	1.571	1.576	1.494	1.191	3.759	4.239	nan	1.151	3.114	3.448	1.418	1.236	0.542	0.891	0.651	0.825	1.110	nan	2.786	1.238	0.820	0.245	0.117	0.220	0.499	1.441	0.199	0.358	0.200	0.341
1387	chr11	35937952	35950238	+	0	NA	Intergenic	LTR37A|LTR|ERV1	-21436	NM_174902	143458	Hs.745134	NM_174902	ENSG00000179241	LDLRAD3	LRAD3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.776	1.316	nan	2.719	2.288	0.963	2.068	0.166	0.078	0.230	0.253	4.042	0.947	0.079	0.125	0.578	0.389	0.658	0.642	3.240	2.688	3.822	1.339	0.560	0.557	0.902	1.503	0.650	0.841	0.404	0.222	0.308	0.427	0.767	1.186	0.238	nan	1.112	0.866	0.289	0.412	0.132	0.552	2.068	4.042	0.133	0.131	0.120	0.140
1932	chr12	49521813	49528048	+	0	NA	intron (NM_006082, intron 1 of 3)	CpG	374	NM_006082	10376	Hs.524390	NM_006082	ENSG00000123416	TUBA1B	K-ALPHA-1	tubulin alpha 1b	protein-coding	5.439	nan	3.769	5.153	6.607	3.452	4.288	3.186	0.398	4.021	2.205	6.242	5.177	3.854	0.174	6.736	6.944	7.478	8.624	14.411	12.905	10.813	6.873	11.939	12.123	5.349	7.422	8.025	11.415	8.528	9.364	3.607	6.717	7.742	8.720	6.524	9.564	5.235	2.394	5.943	6.071	1.953	2.573	4.288	6.242	1.851	2.681	3.045	2.823
2634	chr14	60812240	60825521	+	0	NA	Intergenic	Intergenic	102914	NM_021003	5494	Hs.130036	NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding	nan	nan	0.946	0.346	1.877	0.914	1.137	0.214	0.062	0.238	0.130	0.207	1.097	0.115	0.110	0.270	0.319	0.241	0.312	0.718	0.913	3.972	1.331	nan	0.442	0.259	0.380	1.501	nan	1.275	0.877	0.163	0.300	4.502	4.830	1.327	4.342	1.197	1.034	0.756	1.009	1.422	0.115	1.137	0.207	0.081	0.152	0.045	0.907
1785	chr12	5365735	5388668	+	0	NA	Intergenic	MIRc|SINE|MIR	-24884	NR_120477	101929584	Hs.436529	NR_120476	ENSG00000256115	LOC101929584	-	uncharacterized LOC101929584	ncRNA	0.781	nan	nan	4.127	0.533	0.294	0.469	0.328	0.064	0.658	0.281	2.095	4.870	0.085	0.105	0.319	0.255	0.551	1.222	nan	0.882	2.807	0.779	0.725	0.763	0.560	0.778	2.142	2.447	0.329	0.198	0.362	0.653	1.247	1.105	0.335	nan	0.764	0.488	0.402	0.450	0.175	0.639	0.469	2.095	0.013	0.022	0.224	0.200
8419	chrX	152773153	152805709	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12149	NM_001001344	492	Hs.533956	NM_021949	ENSG00000067842	ATP2B3	CFAP39|CLA2|OPCA|PMCA3|PMCA3a|SCAX1	ATPase plasma membrane Ca2+ transporting 3	protein-coding	1.373	1.451	1.971	0.073	0.586	0.259	0.659	0.063	0.045	0.072	0.074	0.052	1.951	0.043	0.031	0.646	1.025	0.227	0.332	1.287	1.235	1.015	0.293	0.175	0.215	0.269	0.516	0.128	0.126	3.288	4.555	0.481	0.591	0.836	0.793	0.517	1.356	0.940	0.650	3.359	0.580	0.177	0.446	0.659	0.052	0.238	0.043	0.186	0.333
1250	chr10	126372058	126417603	+	0	NA	intron (NR_120631, intron 1 of 1)	intron (NR_120631, intron 1 of 1)	2233	NR_120630	101927944	Hs.437448	NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA	nan	0.716	1.299	0.405	7.620	4.279	0.512	0.125	0.067	0.577	0.327	1.144	0.613	0.081	0.062	0.517	0.693	0.408	0.704	0.650	0.691	3.152	1.164	0.641	0.687	0.344	0.608	3.580	3.529	0.259	0.297	0.390	0.551	0.626	0.424	0.382	0.565	1.285	0.706	1.083	2.328	0.237	0.148	0.512	1.144	0.126	0.390	0.208	0.178
6642	chr6	19448080	19467436	+	0	NA	intron (NR_134615, intron 1 of 1)	intron (NR_134615, intron 1 of 1)	7706	NR_134615	105374960	Hs.519913	NR_134615		LOC105374960	-	uncharacterized LOC105374960	ncRNA	1.267	nan	1.965	0.688	0.939	0.456	0.588	1.269	0.217	0.607	0.285	1.497	3.537	0.234	0.097	0.473	0.336	0.257	0.517	0.730	1.053	4.165	1.281	0.318	0.303	1.253	1.378	0.674	0.689	0.504	0.249	0.197	0.272	3.017	2.792	0.428	0.994	1.189	0.901	1.969	0.772	0.481	0.865	0.588	1.497	0.184	0.483	0.051	0.115
5810	chr3	197078418	197109086	+	0	NA	Intergenic	Intergenic	-67609	NM_001290983	1739	Hs.292549	NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs large MAGUK scaffold protein 1	protein-coding	nan	1.930	0.950	0.205	0.419	0.189	0.335	1.440	0.419	0.179	0.150	0.183	nan	0.067	0.070	0.291	0.267	0.319	0.571	0.823	0.782	0.411	0.167	0.494	0.603	0.953	1.651	1.149	1.412	1.388	0.858	0.248	0.271	0.278	0.222	0.766	1.755	0.722	0.541	5.694	0.420	0.122	0.202	0.335	0.183	0.057	0.089	0.042	0.302
4893	chr20	23116118	23127245	+	0	NA	Intergenic	Intergenic	-8408	NR_034149	200261	Hs.352228	NM_182535	ENSG00000233746	LINC00656	-	long intergenic non-protein coding RNA 656	ncRNA	0.582	0.973	nan	1.026	1.040	0.360	0.196	0.332	0.116	0.268	0.159	1.994	0.912	0.029	0.078	0.510	0.253	0.153	0.332	1.667	1.246	0.858	0.455	0.096	0.184	0.467	0.775	8.912	6.668	0.530	0.666	0.215	0.306	0.787	1.276	0.100	0.115	2.369	1.386	1.113	0.392	0.068	0.014	0.196	1.994	0.352	7.700	0.213	0.045
3957	chr19	7552999	7571056	+	0	NA	promoter-TSS (NM_198534)	promoter-TSS (NM_198534)	-418	NM_198534	374877	Hs.631862	NM_198534	ENSG00000198723	C19orf45	-	chromosome 19 open reading frame 45	protein-coding	1.044	0.934	1.446	1.073	1.104	0.511	0.303	0.149	0.089	0.425	0.257	1.229	1.723	0.626	0.092	1.341	1.378	0.710	1.199	1.798	1.647	2.400	0.725	1.013	1.008	0.222	0.415	2.033	nan	0.988	0.831	0.589	0.537	0.635	0.571	0.442	1.115	2.093	1.260	1.053	0.379	0.058	0.287	0.303	1.229	0.373	0.634	0.083	0.242
8409	chrX	128220795	128227912	+	0	NA	Intergenic	Intergenic	433129	NM_001282874	6594	Hs.152292	NM_003069	ENSG00000102038	SMARCA1	ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding	0.619	nan	1.320	0.500	7.777	3.653	0.981		0.023	2.952	1.652	0.799	0.196	0.016	0.061	0.280	0.211	0.318	0.530	0.160	0.229	4.412	1.903	0.134	0.117	0.202	0.215	0.209	0.195	0.341	0.255	0.023	0.112	4.301	3.514	0.321	0.364	1.574	0.887	0.008		1.136	0.150	0.981	0.799	0.125	0.072		0.087
3497	chr17	61775267	61780576	+	0	NA	promoter-TSS (NM_030576)	promoter-TSS (NM_030576)	223	NR_046273	729683	Hs.534931	NR_046273		LOC729683	-	uncharacterized LOC729683	ncRNA	6.566	nan	3.555	4.844	4.508	2.411	5.108	1.098	0.178	1.332	0.775	4.354	5.644	2.621	0.153	9.530	10.364	3.072	3.996	7.447	6.099	5.269	2.235	11.120	11.829	1.023	nan	9.053	15.327	2.849	3.264	3.997	6.810	6.232	4.106	2.907	3.412	2.012	1.247	1.436	1.027	1.260	3.078	5.108	4.354	1.203	1.675	2.424	2.946
6531	chr5	160822666	160842917	+	0	NA	intron (NM_021911, intron 6 of 10)	intron (NM_021911, intron 6 of 10)	142339	NM_021911	2561	Hs.303527	NM_000813	ENSG00000145864	GABRB2	-	gamma-aminobutyric acid type A receptor beta2 subunit	protein-coding	nan	0.722	0.914	0.030	0.220	0.072	0.081	0.059	0.068	0.055	0.102	0.024	0.352	0.048	0.105	0.204	0.105	0.206	0.311	0.181	0.209	0.073	0.061	0.071	0.090	2.989	2.961	0.142	0.166	0.665	0.470	0.113	0.124	0.073	0.084	0.154	0.210	0.533	0.338	0.254	0.751	0.024	0.024	0.081	0.024	0.306	0.070	0.015	0.037
7022	chr6	145669303	145672910	+	0	NA	Intergenic	Intergenic	-384899	NR_038246	100507557	Hs.124537	NR_038244	ENSG00000235652	LOC100507557	-	uncharacterized LOC100507557	ncRNA	nan	0.829	nan	0.097	0.304	0.263	0.216	0.042	0.056	0.043	0.047	0.186	0.415	0.030	0.184	3.323	3.685	13.570	8.054	0.349	0.340	0.255	0.166	0.379	0.316	0.049	0.197	0.180	0.129	1.421	1.048	0.331	0.609	0.068	0.212	0.879	1.469	0.258	0.445	0.045	0.050			0.216	0.186		0.085	0.192	0.477
3919	chr18	77193812	77228600	+	0	NA	intron (NM_172389, intron 5 of 9)	CpG	50932	NM_172389	4772	Hs.534074	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T-cells 1	protein-coding	nan	nan	0.483	0.031	0.938	0.452	0.581	0.056	0.051	0.091	0.100	0.512	0.357	0.053	0.061	2.951	3.419	3.456	4.044	0.796	nan	0.691	0.273	0.563	0.568	0.068	0.165	0.157	nan	0.329	0.247	0.630	1.006	0.144	0.200	0.055	0.115	0.273	0.352	0.296	0.051	0.046	0.284	0.581	0.512	0.134	0.038	0.371	0.029
728	chr1	185527596	185566308	+	0	NA	intron (NR_110793, intron 2 of 3)	MER11A|LTR|ERVK	50668	NR_110793	101929093	Hs.535227	NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA	nan	nan	0.845	0.231	0.497	0.294	0.297	0.195	0.200	0.354	0.204	0.448	0.767	0.503	0.132	0.818	0.926	2.169	6.732	0.660	nan	0.294	0.181	nan	0.397	0.438	0.649	0.928	1.682	0.378	0.164	0.839	0.863	0.085	0.123	0.287	nan	0.974	0.691	0.164	0.156	0.007	0.102	0.297	0.448	0.057	0.081	0.240	0.060
1244	chr10	125184870	125191982	+	0	NA	Intergenic	Intergenic	-237445	NM_153442	2849	Hs.12751	NM_153442	ENSG00000154478	GPR26	-	G protein-coupled receptor 26	protein-coding	nan	0.377	0.467	0.025	0.702	0.338	0.326	0.072	0.067	0.023	0.101	0.235	0.338		0.094	10.861	11.753	0.471	0.542	0.162	0.259	0.567	0.366	0.161	0.075	0.106	0.125	0.233	0.370	0.292	0.193	0.974	1.524	0.043	0.141	0.079	0.145	0.309	0.385	0.015	0.139		0.388	0.326	0.235	0.165		0.795	0.052
1638	chr11	111893560	111897511	+	0	NA	promoter-TSS (NM_001931)	promoter-TSS (NM_001931)	-3	NM_001931	1737	Hs.335551	NM_001931	ENSG00000150768	DLAT	DLTA|PDC-E2|PDCE2	dihydrolipoamide S-acetyltransferase	protein-coding	3.297	3.659	2.386	5.059	3.859	2.475	3.622	0.797	0.202	1.911	1.425	5.649	9.263	4.131	0.155	20.410	20.219	4.574	7.118	9.410	8.747	5.011	2.206	9.137	9.660	4.967	nan	6.944	10.377	7.350	9.406	7.735	12.975	6.938	6.035	4.295	5.950	3.473	2.635	4.432	5.373	1.425	2.757	3.622	5.649	1.417	2.210	4.908	2.497
29	chr1	2395645	2415617	+	0	NA	intron (NM_001303012, intron 1 of 21)	intron (NM_001303012, intron 1 of 21)	-2123	NM_001303013	9651	Hs.170156	NM_014638	ENSG00000149527	PLCH2	PLC-L4|PLC-eta2|PLCL4|PLCeta2	phospholipase C eta 2	protein-coding	2.257	nan	2.531	0.207	0.319	0.178	0.364	0.065	0.032	0.117	0.108	0.054	1.686	0.070	0.065	0.750	1.646	0.097	0.159	0.541	0.582	0.598	0.152	0.275	0.260	1.047	nan	nan	0.545	nan	3.283	0.651	0.604	0.259	0.283	1.640	4.407	0.802	0.565	5.443	0.090	0.047	0.376	0.364	0.054	0.674	0.148	0.159	1.148
7816	chr8	97967458	98011770	+	0	NA	intron (NM_016134, intron 5 of 7)	L1PB1|LINE|L1	300562	NM_033512	85453	Hs.173094	NM_033512	ENSG00000180543	TSPYL5	-	TSPY like 5	protein-coding	5.839	3.225	5.600	0.313	0.408	0.167	0.170	0.750	0.181	0.064	0.054	0.543	0.481	0.069	0.081	0.330	0.195	0.231	nan	0.562	0.651	1.373	0.502	0.266	0.217	0.365	0.595	0.791	0.758	0.575	0.309	0.190	0.254	0.176	0.213	5.419	11.704	0.281	0.356	0.034	0.127	0.052	0.046	0.170	0.543	0.024	0.032	0.060	3.343
5831	chr4	7862205	7922181	+	0	NA	intron (NM_001134647, intron 1 of 17)	L1ME1|LINE|L1	-48535	NM_203423	389199	Hs.375210	NM_203423		LOC389199	-	uncharacterized LOC389199	protein-coding	1.327	0.556	nan	0.150	0.267	0.096	0.402	1.472	0.301	0.209	0.237	0.423	0.462	0.070	0.075	1.597	1.349	1.832	2.635	0.630	0.608	nan	0.370	0.418	0.427	1.422	1.833	0.564	0.659	5.706	5.941	0.522	0.904	0.537	0.752	0.326	0.754	nan	0.624	0.123	0.499	0.172	0.343	0.402	0.423	0.305	0.138	0.458	0.120
4087	chr19	43844097	43861552	+	0	NA	promoter-TSS (NR_026881)	promoter-TSS (NR_026881)	-384	NR_026881	23574	Hs.721578	NR_026881		PRG1	-	p53-responsive gene 1	ncRNA	0.558	1.116	0.859	0.181	0.190	0.101	0.110	0.111	0.147	0.174	0.127	0.712	0.243	0.055	0.103	0.644	0.599	0.798	0.677	0.200	0.282	4.778	1.018	0.348	0.484	0.158	0.337	0.127	0.153	0.184	0.078	0.476	0.437	1.610	2.028	0.228	0.427	1.422	1.035	0.032	0.078	0.581	0.051	0.110	0.712	0.047	0.191	0.073	0.070
1969	chr12	56726088	56734424	+	0	NA	Intergenic	AluSp|SINE|Alu	-2407	NM_016584	51561	Hs.98309	NM_016584	ENSG00000110944	IL23A	IL-23|IL-23A|IL23P19|P19|SGRF	interleukin 23 subunit alpha	protein-coding	nan	1.823	1.348	3.123	2.963	1.642	2.229	1.695	0.193	1.778	0.851	2.683	4.716	1.161	0.136	nan	2.750	3.715	5.819	4.606	nan	9.226	4.951	6.445	7.331	1.978	nan	5.800	nan	1.823	1.562	1.798	2.237	3.233	3.947	2.527	2.961	3.142	1.608	0.845	1.598	0.603	0.836	2.229	2.683	0.630	1.483	1.352	0.828
2203	chr12	125549100	125585497	+	0	NA	intron (NM_023928, intron 3 of 17)	AluSg|SINE|Alu	17385	NM_001319839	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding	1.041	1.517	1.826	1.573	2.018	1.030	0.564	0.178	0.137	0.781	0.514	1.800	3.586	0.291	0.105	0.883	1.121	0.816	0.775	2.581	3.003	nan	0.842	0.442	0.545	0.548	0.815	4.529	5.047	0.728	0.695	0.664	1.022	0.500	0.639	0.581	1.104	2.017	1.117	2.166	2.203	0.174	0.136	0.564	1.800	0.238	0.860	0.494	0.298
6358	chr5	89852489	89860564	+	0	NA	intron (NR_003149, intron 1 of 89)	intron (NR_003149, intron 1 of 89)	1909	NR_003149	84059	Hs.591777	NM_032119	ENSG00000164199	ADGRV1	FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b	adhesion G protein-coupled receptor V1	protein-coding	2.108	2.680	1.102	2.411	2.693	1.589	0.846	0.100	0.033	1.376	0.844	0.012	2.357	0.040	0.081	1.653	2.012	1.698	1.825	3.219	2.842	3.791	1.019	0.712	0.613	2.313	2.952	3.248	4.743	4.325	4.350	0.415	0.994	7.010	8.528	4.816	nan	1.207	0.800	0.927	1.797	1.411	1.346	0.846	0.012	0.264	1.423	0.505	2.766
4358	chr2	53816116	53916962	+	0	NA	Intergenic	Intergenic	-128381	NM_001346127	494143	Hs.585944	NM_001008708	ENSG00000143942	CHAC2	-	ChaC cation transport regulator homolog 2	protein-coding	10.166	nan	9.728	0.187	0.216	0.169	0.227	0.219	0.085	0.095	0.140	0.149	0.388	0.059	0.136	0.387	0.269	0.362	0.302	0.379	0.438	0.254	0.109	0.405	0.387	0.526	0.793	0.498	0.462	0.439	0.242	0.533	0.701	12.050	10.087	0.347	0.697	0.396	0.366	0.111	0.106	1.996	0.084	0.227	0.149	0.064	0.503	0.576	0.167
2994	chr15	93149205	93170465	+	0	NA	TTS (NM_207446)	TTS (NM_207446)	39196	NM_207446	400451	Hs.27373	NM_207446	ENSG00000185442	FAM174B	-	family with sequence similarity 174 member B	protein-coding	nan	nan	nan	0.739	0.441	0.188	0.407	0.105	0.053	0.709	0.467	2.090	5.093	0.086	0.069	0.274	0.177	0.250	0.414	2.670	2.733	nan	0.281	0.311	0.369	0.506	0.931	4.205	4.347	nan	2.388	0.397	0.638	0.693	0.695	0.361	nan	1.439	0.868	1.163	2.939	0.183	0.983	0.407	2.090	0.169	1.077	0.155	0.228
6587	chr6	3538142	3551415	+	0	NA	Intergenic	Intergenic	-87985	NM_015482	63027	Hs.713588	NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding	1.016	1.197	0.949	1.355	0.550	0.243	0.298	0.153	0.073	0.531	0.287	4.021	0.210	0.056	0.083	0.714	0.636	0.360	0.357	0.964	0.936	4.163	1.373	0.356	0.402	0.339	0.619	1.591	1.278	0.452	0.236	0.351	0.546	0.633	0.548	0.283	0.707	3.205	1.445	0.033	1.577	0.080	0.096	0.298	4.021	0.074	0.038	0.165	0.130
4003	chr19	27731715	27741268	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-547884	NR_110688	101927151	Hs.567934	NR_110687	ENSG00000267575	LOC101927151	-	uncharacterized LOC101927151	ncRNA	nan	34.619	34.539	32.047	44.271	30.382	44.674	34.012	90.777	30.833	37.735	23.674	47.476	19.297	25.421	32.980	21.338	31.514	43.395	26.720	30.239	16.677	13.725	25.466	25.987	21.026	23.611	26.032	21.268	37.438	17.860	23.525	30.700	10.037	14.667	19.619	20.880	15.576	20.694	10.249	19.911	9.810	10.036	44.674	23.674	7.641	19.113	16.573	11.513
4836	chr20	6742659	6750369	+	0	NA	Intergenic	Intergenic	-2231	NM_001200	650	Hs.73853	NM_001200	ENSG00000125845	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding	0.699	1.489	0.618	0.547	0.257	0.125	0.766	0.133	0.083	0.244	0.267	0.313	2.397	0.098	0.054	0.608	0.324	11.264	6.922	1.358	1.463	1.549	0.545	5.333	5.702	0.192	0.219	1.102	1.143	1.204	1.143	0.300	0.556	1.644	1.386	0.085	0.290	0.866	0.523	0.252	0.139	0.282	0.782	0.766	0.313		2.583	0.103	0.064
3844	chr18	56448441	56485544	+	0	NA	Intergenic	AluSx1|SINE|Alu	-62840	NM_001318726	55205	Hs.529023	NM_018181	ENSG00000074657	ZNF532	-	zinc finger protein 532	protein-coding	nan	1.322	0.920	0.422	0.478	0.237	2.447	0.138	0.164	0.186	0.137	3.185	0.859	0.210	0.095	0.715	0.662	1.747	2.127	1.615	1.723	3.518	1.237	0.690	0.704	0.430	0.640	0.556	0.635	0.673	0.451	0.292	0.364	1.166	1.479	0.432	1.012	nan	1.433	0.318	0.228	0.355	0.593	2.447	3.185	0.148	0.116	0.090	0.229
3889	chr18	70926939	70957586	+	0	NA	Intergenic	Intergenic	-10529	NR_034133	400655	Hs.579378	NR_034133	ENSG00000263711	LOC400655	-	uncharacterized LOC400655	ncRNA	nan	nan	0.844	0.189	1.963	0.962	0.479	0.058	0.048	0.205	0.141	0.273	0.259	0.046	0.072	0.567	0.446	0.181	0.293	0.682	nan	4.390	1.212	0.172	0.130	0.205	0.270	2.867	nan	0.344	0.134	0.096	0.155	1.319	2.277	0.179	0.417	0.475	0.377	0.013	0.049	0.159	0.109	0.479	0.273	0.009	2.488	0.020	0.149
2086	chr12	94690891	94700181	+	0	NA	intron (NM_005761, intron 28 of 30)	intron (NM_005761, intron 28 of 30)	39239	NR_037687	10154	Hs.584845	NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding	0.722	0.640	0.615	0.119	0.185	0.155	0.138	0.806	0.208	0.034	0.114	0.116	nan	0.024	0.035	0.343	0.223	5.484	1.090	0.552	0.627	0.174	0.108	0.174	0.282	0.511	nan	0.591	nan	0.291	0.194	0.110	0.265	0.123	0.126	0.220	0.465	0.731	0.678	0.173	0.124	0.010	0.068	0.138	0.116	0.011	0.011	0.053	0.053
1322	chr11	15580730	15590408	+	0	NA	Intergenic	Intergenic	-79862	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding	0.523	nan	0.631	1.471	0.939	0.465	0.839	0.031	0.118	0.412	0.145	3.871	2.445	0.034	0.079	nan	0.466	0.415	0.411	8.269	7.292	0.115	0.055	0.375	0.348	1.039	nan	0.692	0.732	0.405	0.197	0.214	0.416	0.374	0.188	0.165	0.152	2.092	nan	1.849	0.610	0.039	0.229	0.839	3.871	0.010	0.062	0.071	0.038
7337	chr7	76300290	76313143	+	0	NA	Intergenic	L2|LINE|L2	-50096	NM_012230	22932	Hs.488877	NM_012230	ENSG00000146707	POMZP3	POM-ZP3|POM121	POM121 and ZP3 fusion	protein-coding	nan	0.744	0.903	0.488	0.402	0.271	0.171	0.167	0.088	0.429	0.250	0.875	0.942	0.068	0.201	2.246	2.632	0.603	nan	1.786	1.776	8.560	3.086	1.011	0.873	0.194	nan	1.949	nan	0.450	0.231	0.757	1.333	2.765	2.764	0.378	0.946	1.178	0.745	0.952	1.726	0.601	0.080	0.171	0.875	0.061	0.016	0.524	0.066
5804	chr3	195708147	195721349	+	0	NA	intron (NR_003264, intron 1 of 16)	intron (NR_003264, intron 1 of 16)	2402	NR_003264	255812	Hs.566872	NR_003264	ENSG00000185485	SDHAP1	SDHAL1|SDHALP1	succinate dehydrogenase complex flavoprotein subunit A pseudogene 1	pseudo	nan	1.985	1.940	1.640	2.975	1.571	1.393	1.477	0.288	1.210	0.933	1.373	nan	0.879	0.096	1.324	1.969	1.906	2.655	2.302	2.576	2.174	0.971	4.339	4.475	1.919	2.504	2.711	3.497	2.876	2.424	7.324	11.074	1.016	1.309	1.940	2.946	1.730	1.027	1.203	2.081	0.448	1.039	1.393	1.373	0.524	0.626	8.542	1.268
2699	chr14	78730720	78746326	+	0	NA	intron (NR_073547, intron 2 of 20)	MER115|DNA|hAT-Tip100	101807	NR_073547	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding	1.112	0.808	0.860	0.095	0.775	0.423	0.411	0.130	0.193	0.181	0.192	0.702	1.540	0.042	0.158	0.272	0.217	0.137	0.156	1.318	1.492	1.406	0.533	0.177	0.178	0.394	0.639	2.282	nan	0.658	0.334	0.137	0.183	1.346	1.389	0.272	0.435	2.896	nan	1.149	2.079	0.344	0.295	0.411	0.702	0.078	0.045	0.031	0.148
7398	chr7	96408277	96417378	+	0	NA	Intergenic	Intergenic	-73624	NM_006304	7979	Hs.489201	NM_006304	ENSG00000127922	SEM1	DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1	SEM1, 26S proteasome complex subunit	protein-coding	nan	0.834	nan	0.146	0.912	0.344	0.225	0.107	0.071	0.975	0.569	0.225	0.300	0.073	0.122	0.325	0.254	0.267	0.324	0.333	0.336	2.026	0.744	0.255	0.268	0.553	0.638	0.181	0.241	0.345	0.129	0.176	0.304	7.989	7.928	0.298	nan	2.171	1.564	0.103	0.140	1.535	0.148	0.225	0.225	0.042	0.066	0.043	0.162
1259	chr10	132936952	132944104	+	0	NA	intron (NM_174937, intron 7 of 11)	intron (NM_174937, intron 7 of 11)	47047	NR_120623	101927489		NR_120623	ENSG00000230098	TCERG1L-AS1	-	TCERG1L antisense RNA 1	ncRNA	0.433	1.442	0.510	1.943	5.350	2.851	0.310	0.041	0.002	0.132	0.187	9.686	0.951	0.016	0.092	0.216	0.066	0.058	0.107	2.376	3.265	5.882	2.362	0.052	0.067	0.056	0.088	7.653	7.128	0.166	0.075	0.376	0.610	0.573	0.311	0.069	0.076	1.901	1.032	1.098	0.880	0.162	0.022	0.310	9.686	0.083	0.113	0.111	
5464	chr3	112278258	112282673	+	0	NA	promoter-TSS (NM_017945)	promoter-TSS (NM_017945)	345	NM_001278712	64422	Hs.477126	NM_022488	ENSG00000144848	ATG3	APG3|APG3-LIKE|APG3L|PC3-96	autophagy related 3	protein-coding	5.036	4.043	2.649	3.156	4.744	2.529	2.648	4.068	0.819	1.764	0.951	9.160	6.129	2.335	0.117	3.472	3.387	4.667	6.501	5.264	nan	9.562	4.306	11.906	12.650	nan	5.362	3.505	5.799	5.348	4.413	2.006	4.331	1.592	2.005	5.482	6.951	2.660	1.397	2.468	3.630	0.281	2.197	2.648	9.160	1.914	1.877	1.255	2.344
5401	chr3	73299915	73310342	+	0	NA	Intergenic	MIRc|SINE|MIR	178019	NM_001303142	23024	Hs.660347	NM_015009	ENSG00000121440	PDZRN3	LNX3|SEMACAP3|SEMCAP3	PDZ domain containing ring finger 3	protein-coding	0.659	0.569	0.621	0.084	0.124	0.077	0.172	0.036	0.093	0.089	0.078	0.172	0.492	0.031	0.079	1.064	0.854	12.306	nan	0.235	0.250	0.145	0.059	0.669	1.002	0.163	0.319	0.199	0.219	0.489	0.210	1.617	3.548	0.084	0.070	0.243	nan	0.576	0.295	0.005	0.060	0.036	0.068	0.172	0.172	0.018	0.039	2.882	0.117
3475	chr17	56377645	56417874	+	0	NA	intron (NM_001261835, intron 11 of 31)	intron (NM_001261835, intron 11 of 31)	-5052	NR_038410	100506779	Hs.718477	NR_038410	ENSG00000265148	TSPOAP1-AS1	BZRAP1-AS1	TSPOAP1 antisense RNA 1	ncRNA	1.505	0.940	1.207	0.207	0.492	0.195	0.560	0.485	0.092	0.243	0.162	0.491	0.451	0.070	0.090	4.029	6.290	0.556	0.867	0.978	1.152	0.980	0.409	nan	2.090	0.145	0.379	nan	nan	3.138	3.004	1.200	1.951	0.167	0.214	2.350	5.177	0.458	0.472	0.256	0.172	0.021	0.249	0.560	0.491	0.675	0.043	0.853	1.829
4319	chr2	45483081	45497201	+	0	NA	Intergenic	Intergenic	-8061	NR_033831	400952	Hs.468368	NR_033831	ENSG00000205054	LINC01121	UNQ6975	long intergenic non-protein coding RNA 1121	ncRNA	1.050	nan	1.184	1.169	0.577	0.294	0.610	0.404	0.172	0.359	0.247	1.969	1.627	0.023	0.117	0.474	0.594	0.250	0.338	nan	1.060	1.547	0.322	0.448	0.485	0.418	0.700	3.482	3.374	0.504	0.287	0.267	0.433	0.341	0.267	0.342	nan	nan	0.774	0.654	0.127	0.054	0.079	0.610	1.969	0.021	2.321	0.042	0.115
8193	chr9	92044057	92053440	+	0	NA	intron (NM_001142287, intron 2 of 20)	intron (NM_001142287, intron 2 of 20)	45863	NM_006378	10507	Hs.494406	NM_006378	ENSG00000187764	SEMA4D	C9orf164|CD100|M-sema-G|SEMAJ|coll-4	semaphorin 4D	protein-coding	0.709	nan	0.966	1.095	0.363	0.340	0.274	0.064	0.068	0.216	0.110	0.501	0.549	0.081	0.075	0.737	0.938	9.434	nan	0.875	0.697	0.945	0.259	0.447	0.509	0.329	0.598	3.381	3.093	0.147	0.166	0.296	0.811	0.279	0.279	0.229	0.342	1.050	0.713	0.207	0.414	0.072	0.132	0.274	0.501	0.049	0.184	0.424	0.026
6327	chr5	73192906	73255252	+	0	NA	intron (NM_001080479, intron 36 of 36)	AluSx1|SINE|Alu	114736	NM_001244364	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding	1.230	nan	1.361	0.073	0.491	0.263	0.381	1.171	0.123	0.194	0.120	0.162	0.568	1.405	0.147	0.279	0.180	0.724	1.994	0.471	0.487	nan	0.215	0.127	0.125	2.870	nan	0.321	0.290	0.856	0.900	0.119	0.160	1.303	1.352	0.415	0.972	0.675	0.463	0.614	0.147	0.644	0.216	0.381	0.162	0.385	0.065	0.030	0.381
6894	chr6	107804189	107837765	+	0	NA	intron (NM_018013, intron 1 of 6)	intron (NM_018013, intron 1 of 6)	9660	NM_018013	55084	Hs.445244	NM_018013	ENSG00000112320	SOBP	JXC1|MRAMS	sine oculis binding protein homolog	protein-coding	1.785	nan	nan	0.844	0.784	0.450	1.161	0.487	0.110	0.176	0.145	0.521	1.555	0.262	0.136	14.437	17.320	0.850	1.161	1.170	nan	1.386	0.544	0.283	0.324	0.722	0.979	0.361	0.429	nan	0.939	0.595	1.322	1.082	1.058	0.465	0.868	0.744	0.454	0.560	1.309	0.278	0.097	1.161	0.521	0.162	0.870	0.760	0.367
4902	chr20	25289248	25311239	+	0	NA	intron (NM_001042472, intron 4 of 12)	LTR65|LTR|ERV1	71375	NM_015600	26090	Hs.441550	NM_015600	ENSG00000100997	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2	abhydrolase domain containing 12	protein-coding	1.198	3.049	nan	0.955	0.518	0.263	0.774	0.981	0.198	0.385	0.211	0.618	0.927	0.079	0.087	1.060	1.707	0.508	1.063	1.954	1.879	1.584	0.437	0.518	0.509	0.517	0.908	5.650	6.121	0.547	0.463	0.525	0.721	0.889	1.315	0.563	1.184	1.466	1.087	1.637	1.625	0.186	0.069	0.774	0.618	0.269	0.380	0.190	0.258
1203	chr10	104400686	104407129	+	0	NA	promoter-TSS (NM_030912)	promoter-TSS (NM_030912)	-345	NM_001345950	81603	Hs.336810	NM_030912	ENSG00000171206	TRIM8	GERP|RNF27	tripartite motif containing 8	protein-coding	nan	nan	6.327	5.201	6.870	4.225	3.209	3.867	0.350	3.467	1.148	9.537	10.353	5.437	0.102	4.934	7.867	4.645	8.319	9.388	7.130	10.934	3.555	7.211	7.518	2.584	nan	9.262	13.753	3.379	4.874	1.923	5.183	4.199	3.413	4.119	nan	2.182	1.196	3.284	6.228	0.958	4.175	3.209	9.537	1.266	4.721	2.515	1.977
4261	chr2	25473938	25476093	+	0	NA	promoter-TSS (NM_001320893)	promoter-TSS (NM_001320893)	-15	NM_001320893	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding	8.113	2.470	9.894	5.937	6.686	3.251	6.281	0.585	0.299	0.203	0.263	5.310	21.567	5.244	0.122	8.393	8.713	6.483	7.252	12.479	11.378	9.063	3.643	24.081	25.434	0.155	0.549	11.540	19.354	8.112	9.967	5.194	8.503	2.363	2.031	11.845	8.779	1.935	1.186	8.730	6.101	0.263	3.524	6.281	5.310	6.161	1.921	2.542	3.733
4429	chr2	89830305	89861841	+	0	NA	Intergenic	HSATII|Satellite|Satellite	734189	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA	nan	5.828	nan	0.506	1.230	0.719	0.840	0.700	4.934	0.513	1.704	0.418	1.702	0.282	1.685	2.096	0.899	0.633	0.828	1.675	2.534	0.714	0.658	1.041	0.957	1.493	2.202	1.504	1.530	2.431	0.664	0.842	1.678	0.632	1.066	1.215	1.849	0.698	1.097	0.138	0.528	0.371	0.236	0.840	0.418	0.096	0.263	0.352	0.344
1354	chr11	26869695	26882600	+	0	NA	Intergenic	Intergenic	-132573	NM_178498	159963	Hs.148907	NM_178498	ENSG00000148942	SLC5A12	SMCT2	solute carrier family 5 member 12	protein-coding	1.243	1.029	0.642	0.151	0.294	0.062	0.080	0.887	0.212	0.085	0.089	0.185	0.431	0.017	0.056	0.538	0.376	0.190	0.338	0.288	0.306	0.289	0.117	0.242	0.299	5.840	5.405	0.331	0.265	1.179	1.114	0.218	0.308	0.912	0.951	0.187	0.223	0.465	0.516	0.022	0.491	0.399	0.056	0.080	0.185	0.233	0.023	0.099	0.039
4066	chr19	41075331	41083877	+	0	NA	intron (NM_020971, intron 35 of 35)	AluSp|SINE|Alu	-3153	NM_138392	92799	Hs.26506	NM_138392	ENSG00000160410	SHKBP1	PP203|Sb1	SH3KBP1 binding protein 1	protein-coding	2.139	1.292	1.813	0.915	1.340	0.547	0.616	0.489	0.170	0.475	0.242	0.716	8.769	1.983	0.147	0.847	0.917	1.291	1.781	1.871	1.289	2.224	0.788	1.588	1.766	1.443	1.912	1.987	2.924	1.869	1.157	0.622	0.798	0.632	0.525	1.452	2.800	1.455	0.820	1.009	1.341	0.089	0.390	0.616	0.716	0.478	0.914	0.278	0.908
8	chr1	1092222	1108141	+	0	NA	Intergenic	CpG	-2303	NR_029639	406984		NR_029639	ENSG00000207730	MIR200B	MIRN200B|mir-200b	microRNA 200b	ncRNA	1.503	nan	3.575	5.521	5.196	2.443	0.178	0.122	0.102	1.680	0.813	2.887	4.149	0.087	0.065	4.986	5.762	2.867	4.578	10.897	9.445	2.974	1.148	16.390	16.368	0.168	nan	nan	8.027	nan	0.175	3.410	5.783	1.332	1.146	0.138	0.250	0.856	0.652	3.349	7.749	0.275	11.284	0.178	2.887	0.825	0.070	2.510	0.015
7479	chr7	129900575	129921946	+	0	NA	intron (NM_001869, intron 4 of 10)	MER51A|LTR|ERV1	4557	NM_001869	1358	Hs.490038	NM_001869	ENSG00000158516	CPA2	-	carboxypeptidase A2	protein-coding	3.029	0.707	2.313	0.687	4.584	2.694	3.528	1.178	0.202	2.755	1.436	4.655	0.706	0.112	0.159	0.404	0.299	0.251	0.822	5.196	5.003	4.624	1.734	0.202	0.257	2.507	3.248	1.148	2.061	3.953	4.030	0.514	1.243	4.277	4.398	0.694	1.606	2.244	1.090	2.681	2.929	1.495	1.148	3.528	4.655	1.194	1.817	0.689	0.150
2359	chr13	86092151	86121406	+	0	NA	intron (NR_046989, intron 1 of 3)	MIRc|SINE|MIR	169040	NR_046989	100874137	Hs.742643	NR_046989	ENSG00000226317	LINC00351	-	long intergenic non-protein coding RNA 351	ncRNA	nan	nan	0.658	0.505	0.372	0.143	0.196	0.783	0.039	0.684	0.735	0.135	0.817	0.044	0.099	0.682	0.511	0.701	0.612	0.428	0.498	2.907	1.392	0.199	0.169	0.053	0.088	1.445	1.960	0.478	0.386	0.273	0.504	0.258	0.427	0.340	0.500	0.203	0.141	0.017	0.076	0.042	0.320	0.196	0.135		0.725	0.153	0.034
6375	chr5	94107824	94123209	+	0	NA	intron (NM_001297777, intron 15 of 19)	intron (NM_001297777, intron 15 of 19)	161125	NM_032290	84250	Hs.657315	NM_032290	ENSG00000133302	SLF1	ANKRD32|BRCTD1|BRCTx	SMC5-SMC6 complex localization factor 1	protein-coding	nan	7.518	0.864	0.466	0.273	0.145	1.066	0.150	0.146	0.245	0.075	0.008	0.388	0.724	0.111	0.228	0.154	0.201	0.203	0.181	0.187	2.726	0.795	0.092	0.100	0.575	0.856	0.525	0.613	0.676	0.377	0.098	0.129	2.317	3.966	0.318	nan	0.932	0.545	0.131	0.038	0.735	0.015	1.066	0.008	0.025	1.755	0.013	0.192
7790	chr8	93098855	93122866	+	0	NA	intron (NM_175634, intron 1 of 11)	intron (NM_175634, intron 1 of 11)	1056	NM_001198628	862	Hs.368431	NM_004349	ENSG00000079102	RUNX1T1	AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2	RUNX1 translocation partner 1	protein-coding	nan	1.423	4.489	3.711	1.338	0.761	2.659	1.589	0.173	0.764	0.618	3.170	12.039	0.052	0.071	0.218	0.159	0.311	nan	5.506	4.879	2.624	0.828	0.280	0.247	1.297	1.619	3.453	4.504	5.804	8.062	0.164	0.212	1.219	0.593	2.968	4.676	0.952	0.594	5.119	2.989	0.480	2.931	2.659	3.170	0.685	2.325	0.066	1.006
4993	chr20	49162123	49213585	+	0	NA	intron (NM_002827, intron 4 of 9)	intron (NM_002827, intron 4 of 9)	-14469	NR_030375	693230		NR_030375	ENSG00000208018	MIR645	MIRN645|hsa-mir-645	microRNA 645	ncRNA	nan	nan	1.099	2.520	0.354	0.160	0.321	0.663	0.107	0.238	0.159	0.929	5.336	0.099	0.107	0.643	0.778	0.439	0.783	1.479	1.534	nan	0.356	0.592	0.555	0.673	1.154	4.868	5.875	nan	0.460	0.434	0.553	0.137	0.128	0.389	0.930	2.432	1.246	1.960	2.294	0.027	0.456	0.321	0.929	0.161	0.233	0.080	0.118
6631	chr6	16799345	16807862	+	0	NA	Intergenic	Intergenic	-41882	NM_000332	6310	Hs.434961	NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding	1.210	nan	0.882	0.112	3.081	1.320	5.373	1.202	0.169	0.131	0.135	0.441	0.643	0.042	0.097	3.416	3.443	1.388	1.209	0.479	0.598	1.423	0.375	0.356	0.357	7.105	6.869	0.146	0.139	3.017	3.083	2.113	2.991	8.833	9.973	2.315	3.273	0.813	0.603	0.046	0.115	1.699	0.196	5.373	0.441	0.035	0.333	4.072	1.512
5215	chr22	25515223	25530304	+	0	NA	intron (NM_001145206, intron 4 of 10)	intron (NM_001145206, intron 4 of 10)	-14104	NR_038941	100128531	Hs.662126	NR_038941	ENSG00000203280	LOC100128531	-	uncharacterized LOC100128531	ncRNA	1.323	nan	0.835	0.555	0.524	0.276	0.567	0.104	0.055	0.124	0.128	0.806	0.885	0.094	0.081	0.919	1.123	0.830	2.293	0.650	0.652	1.155	0.320	1.219	1.234	0.269	0.629	1.219	1.664	0.793	0.596	0.696	0.989	0.838	1.821	0.220	0.283	2.413	1.542	0.066	0.065	0.084	0.089	0.567	0.806	0.284	0.688	0.432	0.008
5970	chr4	91102429	91113758	+	0	NA	intron (NM_001145065, intron 1 of 10)	intron (NM_001145065, intron 1 of 10)	-48089	NM_207491	401145	Hs.654735	NM_207491	ENSG00000184305	CCSER1	FAM190A	coiled-coil serine rich protein 1	protein-coding	0.852	1.741	1.499	0.271	3.785	1.840	0.683	0.100	0.085	0.722	0.512	0.201	2.915	0.019	0.080	0.683	0.494	1.331	3.198	0.557	0.631	0.063	0.037	0.769	0.685	3.384	3.853	0.613	0.666	3.887	2.722	0.307	0.567	2.280	6.163	0.706	1.454	0.603	0.426	0.276	0.691	0.521	0.446	0.683	0.201	0.300	0.072	0.308	0.177
4094	chr19	45090736	45119417	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-11864	NM_001205280	147710	Hs.512509	NM_001205280	ENSG00000216588	IGSF23	-	immunoglobulin superfamily member 23	protein-coding	0.777	0.935	0.733	0.379	0.275	0.145	0.162	0.332	0.217	0.192	0.182	0.782	0.298	0.081	0.116	2.713	2.492	0.730	0.737	0.536	0.493	3.932	1.526	10.310	11.030	0.221	0.408	0.523	0.851	0.420	0.243	1.440	1.419	0.688	0.788	0.365	0.776	1.308	0.956	0.111	0.083	0.150	0.027	0.162	0.782	0.061	0.046	0.709	0.228
3540	chr17	72128677	72162133	+	0	NA	Intergenic	AluJb|SINE|Alu	-54390	NM_000999	6169	Hs.380953	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding	1.161	0.862	1.113	0.120	0.417	0.259	0.269	0.112	0.144	0.114	0.162	0.136	0.495	0.034	0.111	2.437	2.854	1.914	0.700	0.485	0.558	0.434	0.152	0.069	0.079	nan	0.533	0.836	0.779	1.548	1.235	0.634	1.002	0.128	0.189	1.227	4.365	nan	0.511	0.073	0.141	0.032	0.134	0.269	0.136	0.214	0.348	0.272	1.568
6421	chr5	121407506	121415119	+	0	NA	intron (NM_001317073, intron 1 of 5)	intron (NM_001317073, intron 1 of 5)	1557	NM_001317073	4015	Hs.102267	NM_002317	ENSG00000113083	LOX	AAT10	lysyl oxidase	protein-coding	nan	1.217	1.034	0.229	0.465	0.106	0.230	2.449	0.209	0.429	0.173	0.245	0.663	0.227	0.080	0.296	0.214	8.299	6.286	0.664	0.616	0.864	0.111	0.322	0.240	1.814	2.502	0.297	0.494	0.490	0.367	0.187	0.330	1.781	1.460	0.511	0.750	0.532	0.566	0.117	0.082	0.411	0.361	0.230	0.245	0.025	0.727	0.051	0.245
4704	chr2	213244608	213261706	+	0	NA	intron (NM_005235, intron 1 of 27)	intron (NM_005235, intron 1 of 27)	37927	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA	nan	0.926	nan	0.133	0.263	0.160	0.097	0.106	0.066	0.165	0.166	0.056	0.391	0.038	0.021	0.505	0.397	0.840	1.001	0.214	0.266	0.603	0.295	0.258	0.317	3.011	3.608	0.290	nan	0.346	0.126	0.138	0.235	0.760	1.057	0.316	0.509	0.279	0.260	0.046	0.067	0.157	0.070	0.097	0.056	0.028	0.024	0.064	0.130
2394	chr13	99609757	99631679	+	0	NA	intron (NM_001130049, intron 1 of 32)	AluSz6|SINE|Alu	9620	NM_001130048	23348	Hs.596105	NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding	0.977	1.451	1.335	0.247	3.052	1.571	0.669	0.290	0.066	0.493	0.392	0.427	0.523	0.054	0.064	0.846	0.896	0.450	0.714	0.543	0.671	2.204	0.643	0.179	0.224	0.264	nan	0.966	1.101	0.917	0.778	0.453	0.622	3.914	3.438	0.885	nan	1.360	0.685	0.555	0.442	0.816	0.452	0.669	0.427	0.160	0.129	0.207	0.332
1266	chr11	529049	540876	+	0	NA	intron (NM_176795, intron 1 of 5)	CpG	605	NM_176795	3265	Hs.37003	NM_005343	ENSG00000174775	HRAS	C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras	HRas proto-oncogene, GTPase	protein-coding	1.485	3.010	2.208	1.067	1.395	0.609	0.940	0.328	0.122	1.027	0.569	2.807	3.734	0.871	0.052	5.139	7.287	1.877	2.580	2.606	2.540	2.374	0.985	2.682	2.628	0.796	1.268	1.406	2.281	1.235	1.156	2.527	4.023	2.266	2.146	1.143	1.233	1.209	0.771	1.047	2.153	0.526	0.282	0.940	2.807	0.404	0.523	1.609	0.444
6578	chr6	1593639	1617020	+	0	NA	promoter-TSS (NR_125804)	promoter-TSS (NR_125804)	-437	NR_125804	101927703	Hs.607964	NR_125804		FOXCUT	LINC01379|TCONS_00011636	FOXC1 upstream transcript (non-protein coding)	ncRNA	1.218	1.583	3.576	1.592	1.885	0.941	0.991	2.016	0.187	0.270	0.153	0.441	1.006	0.537	0.077	0.446	0.397	2.611	4.974	0.896	0.636	1.221	0.340	1.049	1.003	0.483	0.921	0.620	1.050	0.521	0.286	0.452	0.491	0.492	0.633	0.219	0.503	0.898	0.513	0.072	0.155	0.036	2.996	0.991	0.441	0.037	1.938	0.101	0.111
3419	chr17	42287532	42300456	+	0	NA	exon (NM_001076684, exon 3 of 20)	exon (NM_001076684, exon 3 of 20)	3047	NM_001076684	7343	Hs.89781	NM_014233	ENSG00000108312	UBTF	NOR-90|UBF|UBF-1|UBF1|UBF2	upstream binding transcription factor, RNA polymerase I	protein-coding	5.149	3.767	nan	4.329	5.423	2.708	4.380	1.809	0.362	3.035	1.598	4.927	7.488	3.051	0.099	4.779	5.538	2.971	4.409	7.234	nan	4.607	1.486	7.156	7.291	2.025	2.823	6.165	nan	6.057	7.501	3.333	6.341	3.862	3.099	4.533	5.899	1.927	1.052	3.565	4.259	1.509	3.298	4.380	4.927	1.166	3.617	2.354	2.694
3326	chr17	20972507	20982442	+	0	NA	Intergenic	LTR47B|LTR|ERVL	-1395	NR_110895	101060544	Hs.585812	NR_110895	ENSG00000236819	LINC01563	HP08942	long intergenic non-protein coding RNA 1563	ncRNA	nan	nan	nan	0.072	0.375	0.258	0.064	0.076	0.080	0.127	0.092	0.061	0.222	0.079	0.091	0.352	0.288	0.280	0.205	0.668	0.525	0.732	0.248	0.170	0.102	2.108	2.258	0.370	0.453	5.429	4.933	0.096	0.161	0.058	0.056	3.635	9.203	0.363	0.362	0.881	0.144	0.019	0.008	0.064	0.061	0.020	0.092	0.020	4.179
5433	chr3	96648712	96654391	+	0	NA	intron (NM_001080448, intron 2 of 17)	MER87B|LTR|ERV1	118126	NM_001278301	285220	Hs.272208	NM_173655	ENSG00000080224	EPHA6	EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066	EPH receptor A6	protein-coding	0.762	0.908	0.665	0.078	0.306	0.170	0.133	0.065	0.305	0.083	0.133	0.126	0.150	0.019	0.064	0.231	0.244	0.118	0.191	0.202	0.178	0.496	0.043	0.333	0.367	0.684	1.040	0.214	0.216	11.494	9.317	0.083	0.197	0.126	0.081	0.550	0.953	0.528	0.446	0.010	0.095	0.017	0.014	0.133	0.126	0.017	0.035	0.035	0.525
4209	chr2	8904783	8924912	+	0	NA	intron (NM_020738, intron 21 of 29)	L2a|LINE|L2	62908	NM_020738	57498	Hs.9873	NM_020738	ENSG00000134313	KIDINS220	ARMS	kinase D interacting substrate 220	protein-coding	0.868	0.634	0.729	0.113	1.249	0.582	0.268	0.146	0.072	0.733	0.686	0.402	0.473	0.097	0.117	0.302	0.290	0.354	0.391	0.431	0.494	4.180	4.866	0.233	0.194	0.693	0.752	0.462	0.423	0.470	0.212	0.166	0.300	0.456	0.703	0.375	0.806	1.787	0.766	0.057	0.150	0.152	0.358	0.268	0.402	0.025	0.065	0.074	0.110
4784	chr2	239310249	239336952	+	0	NA	Intergenic	L1MEg|LINE|L1	-11969	NM_001330196	51665	Hs.516788	NM_016114	ENSG00000065802	ASB1	ASB-1	ankyrin repeat and SOCS box containing 1	protein-coding	1.573	nan	1.498	2.218	1.047	0.762	0.699	0.220	0.036	0.446	0.331	1.463	3.227	0.576	0.099	3.355	2.852	2.797	2.079	0.904	0.962	1.041	0.441	1.631	1.678	0.993	1.437	4.669	nan	0.898	0.961	1.257	1.616	0.483	0.528	0.599	1.055	1.518	0.956	1.026	1.100	0.075	0.344	0.699	1.463	0.105	0.835	0.392	0.398
7514	chr7	139952536	139963047	+	0	NA	Intergenic	MLT2D|LTR|ERVL	80730	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	JHDM1D-AS1	-	JHDM1D antisense RNA 1 (head to head)	ncRNA	nan	nan	nan	1.797	0.315	0.092	0.135	0.098	0.104	0.874	0.376	3.992	0.799	0.175	0.115	0.361	0.693	0.162	0.312	2.511	2.102	nan	0.914	0.742	0.689	0.232	nan	2.208	1.497	nan	0.312	0.346	0.321	0.216	0.215	0.565	1.658	1.762	nan	0.232	0.601	0.009	0.413	0.135	3.992	0.037	0.029	0.085	0.159
39	chr1	4000964	4016060	+	0	NA	intron (NR_040065, intron 2 of 2)	intron (NR_040065, intron 2 of 2)	7840	NR_040065	728716	Hs.668359	NR_040065		LINC01346	-	long intergenic non-protein coding RNA 1346	ncRNA	0.720	nan	0.724	4.773	0.364	0.272	0.162	0.090	0.063	0.116	0.068	0.560	2.105	0.061	0.071	0.215	0.128	0.100	0.160	1.619	1.623	2.057	0.472	0.169	0.173	0.109	nan	nan	6.399	nan	2.638	0.142	0.209	1.526	1.664	0.194	0.430	1.196	0.735	0.262	0.210	0.385	1.032	0.162	0.560	0.777	1.614	0.013	0.083
558	chr1	154389421	154401168	+	0	NA	intron (NM_181359, intron 1 of 8)	intron (NM_181359, intron 1 of 8)	17625	NM_181359	3570	Hs.135087	NM_000565	ENSG00000160712	IL6R	CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80	interleukin 6 receptor	protein-coding	nan	nan	1.345	0.381	0.264	0.178	1.460	1.083	0.219	1.000	0.377	0.160	1.286	0.110	0.107	0.675	1.003	0.783	1.151	0.600	nan	0.658	0.178	0.903	0.853	1.658	2.241	2.032	2.392	0.405	0.245	0.767	0.700	0.459	0.492	0.185	0.349	3.043	1.367	0.038	0.122	0.047	0.081	1.460	0.160	0.313	3.388	0.219	0.053
7854	chr8	104143222	104154779	+	0	NA	intron (NR_027071, intron 1 of 1)	intron (NR_027071, intron 1 of 1)	-3921	NM_024812	79870	Hs.533446	NM_024812	ENSG00000164929	BAALC	-	brain and acute leukemia, cytoplasmic	protein-coding	4.013	4.974	nan	1.354	5.966	3.499	1.178	0.435	0.036	1.682	0.461	3.057	2.873	0.066	0.093	0.470	0.520	0.205	0.400	2.889	2.410	nan	1.631	0.431	0.505	0.771	nan	1.396	nan	nan	2.419	0.592	0.928	4.264	4.812	0.437	nan	2.009	1.415	0.073	0.060	1.317	0.303	1.178	3.057	0.068	4.100	0.154	0.203
8091	chr9	22369362	22382405	+	0	NA	Intergenic	Intergenic	-70957	NM_022160	63951	Hs.371976	NM_022160	ENSG00000176399	DMRTA1	DMO|DMRT4	DMRT like family A1	protein-coding	1.478	nan	nan	0.303	0.207	0.098	0.788	0.116	0.047	0.660	0.271	0.046	0.331	0.033	0.085	0.114	0.107	0.194	0.563	0.355	0.421	3.111	0.972	0.071	0.062	2.737	3.099	0.093	0.109	2.488	2.110	0.130	0.208	4.378	5.402	0.472	0.887	5.893	2.496	0.020	0.054	1.382	0.581	0.788	0.046	0.141	0.676	0.023	0.360
7184	chr7	18458301	18477694	+	0	NA	intron (NM_001321896, intron 1 of 12)	L1MB1|LINE|L1	-67336	NM_001321894	9734	Hs.196054	NM_014707	ENSG00000048052	HDAC9	HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding	nan	1.294	nan	0.104	0.265	0.158	0.521	0.549	0.150	0.186	0.200	0.073	0.380	0.133	0.148	nan	0.346	10.312	5.703	0.433	0.588	0.504	0.150	0.270	0.235	1.314	1.512	0.448	0.467	0.480	0.194	0.148	0.271	1.218	1.407	0.460	1.247	0.614	0.543	0.343	0.804	0.283	0.118	0.521	0.073	0.166	0.058	0.081	0.135
6101	chr4	184641264	184647027	+	0	NA	Intergenic	CpG	63725	NM_199053	60684	Hs.443240	NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY|LGMD2S	trafficking protein particle complex 11	protein-coding	nan	2.350	nan	1.139	2.054	1.126	0.334	0.208	0.166	0.760	0.367	8.013	2.807	0.225	0.043	1.383	1.739	3.239	4.355	3.137	2.616	5.169	1.897	1.809	1.828	0.078	0.145	3.980	6.975	0.504	0.553	1.685	2.437	0.195	0.343	0.138	0.354	1.559	0.862	2.277	1.455	0.032	0.621	0.334	8.013	0.034	0.545	1.203	0.042
4570	chr2	164026059	164071225	+	0	NA	Intergenic	Intergenic	-353385	NM_033272	90134	Hs.657413	NM_033272	ENSG00000184611	KCNH7	ERG3|HERG3|Kv11.3	potassium voltage-gated channel subfamily H member 7	protein-coding	0.869	0.875	nan	0.092	0.330	0.166	0.111	0.086	0.083	0.295	0.346	0.053	0.307	0.079	0.089	0.283	0.185	0.235	0.417	0.191	0.318	0.120	0.082	0.250	0.238	0.345	0.565	0.232	0.238	0.433	0.162	0.133	0.231	3.457	3.974	0.286	0.609	0.890	0.446	0.026	0.052	1.219	0.028	0.111	0.053	0.017	0.052	0.046	0.104
2350	chr13	77452518	77461869	+	0	NA	3' UTR (NM_138444, exon 1 of 1)	3' UTR (NM_138444, exon 1 of 1)	3347	NM_138444	115207	Hs.644125	NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding	nan	1.139	7.931	1.109	1.281	0.727	1.097	1.778	0.120	0.386	0.293	0.154	3.236	0.486	0.080	1.727	1.334	1.208	0.969	1.145	0.728	nan	2.766	0.703	0.795	0.511	0.574	1.081	1.753	nan	3.168	0.371	0.640	2.120	1.274	1.358	nan	0.265	0.129	0.036	0.038	0.388	1.259	1.097	0.154	0.459	0.487	0.096	1.263
2479	chr14	20921972	20924855	+	0	NA	promoter-TSS (NM_017807)	promoter-TSS (NM_017807)	123	NM_001641	328	Hs.73722	NM_001641	ENSG00000100823	APEX1	APE|APE1|APEN|APEX|APX|HAP1|REF1	apurinic/apyrimidinic endodeoxyribonuclease 1	protein-coding	17.307	5.864	7.678	11.501	7.856	3.724	5.662	7.804	0.371	2.300	0.973	6.484	14.510	7.179	0.215	8.299	7.056	12.088	16.950	17.335	15.169	11.676	7.829	25.809	26.821	10.182	12.631	15.161	20.470	18.587	17.895	7.696	10.236	11.631	13.447	9.685	8.601	7.034	4.362	8.191	8.474	2.085	5.283	5.662	6.484	4.006	4.559	2.967	2.501
1	chr1	11311	16678	+	0	NA	TTS (NR_024540)	TTS (NR_024540)	2120	NR_046018	100287102	Hs.618434	NR_046018	ENSG00000223972	DDX11L1	-	DEAD/H-box helicase 11 like 1	pseudo	2.718	nan	2.882	0.637	0.765	0.326	6.378	0.226	0.211	1.989	1.065	1.094	4.839	0.269	0.125	0.990	1.269	0.868	1.456	6.664	6.517	1.878	0.593	1.533	1.190	2.258	nan	nan	1.745	nan	1.411	0.527	0.675	2.982	2.275	0.811	1.321	6.419	3.203	11.756	5.570	1.652	0.340	6.378	1.094	1.306	1.799	0.082	0.384
506	chr1	147734945	147737447	+	0	NA	intron (NM_001037501, intron 18 of 19)	intron (NM_001037501, intron 18 of 19)	-16854	NR_120331	101927468	Hs.515867	NR_120331		LOC101927468	-	uncharacterized LOC101927468	ncRNA	1.011	nan	3.234	5.376	0.362	0.452	0.104	0.335		2.060	0.954	1.434	15.247	3.516	0.193	10.491	12.558	9.552	13.580	2.727	1.883	0.639	0.679	7.340	8.070	1.215	1.593	8.173	10.673	0.771	0.410	15.967	16.927	0.215	0.292	4.514	2.653	0.618	0.614	0.560	6.782	0.036	0.096	0.104	1.434	0.080	3.563	5.992	0.148
5929	chr4	70409844	70418345	+	0	NA	Intergenic	HAL1b|LINE|L1	-22362	NM_001297616	7363	Hs.285887	NM_021139	ENSG00000156096	UGT2B4	HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11	UDP glucuronosyltransferase family 2 member B4	protein-coding	0.402	0.548	0.410	0.388	0.244	0.169	0.060	0.057	0.065	0.093	0.107	0.075	0.143	0.031	0.043	0.290	0.240	0.187	0.272	0.309	0.391	9.093	3.702	0.181	0.331	0.057	0.153	1.612	1.895	0.434	0.183	0.056	0.162	0.030	0.036	0.175	0.286	0.318	0.252	0.013	0.073		0.114	0.060	0.075		0.048	0.012	0.044
5554	chr3	134137281	134169203	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-3427	NR_039951	100616281		NR_039951		MIR4788	-	microRNA 4788	ncRNA	1.402	nan	nan	0.154	0.526	0.262	0.140	0.283	0.191	0.182	0.140	0.985	0.417	0.054	0.093	0.516	0.807	0.212	0.389	5.220	5.590	0.832	0.297	0.348	0.383	0.862	1.303	1.594	1.429	nan	0.930	0.231	0.282	0.082	0.109	1.085	2.886	0.801	0.646	0.183	0.220	0.024	0.414	0.140	0.985	0.275	0.165	0.049	0.831
4184	chr2	3446665	3454968	+	0	NA	intron (NM_016030, intron 6 of 11)	MSTB|LTR|ERVL-MaLR	67370	NM_016030	51112	Hs.252713	NM_016030	ENSG00000171853	TRAPPC12	CGI-87|TTC-15|TTC15	trafficking protein particle complex 12	protein-coding	0.758	0.482	0.745	0.264	0.421	0.292	0.697	0.108	0.078	0.169	0.260	0.261	3.158	0.085	0.138	0.717	0.827	0.412	0.614	0.857	0.648	0.661	0.238	0.164	0.269	0.473	0.667	1.396	1.291	0.367	0.358	0.171	0.338	0.271	0.162	0.468	0.896	1.811	0.856	4.248	7.591	0.023	0.833	0.697	0.261	0.618	0.177	0.024	0.164
7950	chr8	136308205	136324159	+	0	NA	Intergenic	Intergenic	69808	NR_026706	286094	Hs.440978	NR_026706	ENSG00000254083	LINC01591	-	long intergenic non-protein coding RNA 1591	ncRNA	nan	0.862	1.839	0.083	1.431	0.822	0.181	0.094	0.131	0.364	0.157	0.390	0.660	0.034	0.090	0.259	0.155	0.116	0.100	0.603	0.892	6.511	2.033	nan	0.447	0.113	0.215	1.344	1.163	0.375	0.197	0.159	0.283	0.422	0.493	0.315	0.801	1.676	1.025	0.028	0.123	0.054	0.293	0.181	0.390	0.140	0.051	0.062	0.131
8100	chr9	31254683	31285594	+	0	NA	Intergenic	Intergenic	111350	NR_135134	101929620	Hs.547175	NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA	0.736	nan	0.711	0.197	0.290	0.152	0.372	0.099	0.079	0.358	0.274	0.106	0.363	0.045	0.089	0.202	0.144	0.207	0.480	0.314	0.428	8.373	5.452	0.158	0.146	0.611	0.668	0.250	0.306	0.405	0.138	0.118	0.172	1.117	1.703	0.151	0.217	1.314	0.815	0.016	0.034	0.185	0.222	0.372	0.106	0.016	0.157	0.048	0.028
7583	chr8	6563796	6569310	+	0	NA	promoter-TSS (NR_125386)	promoter-TSS (NR_125386)	675	NM_018361	55326	Hs.624002	NM_018361	ENSG00000155189	AGPAT5	1AGPAT5|LPAATE	1-acylglycerol-3-phosphate O-acyltransferase 5	protein-coding	3.760	2.706	3.664	2.685	4.081	2.440	3.691	1.155	0.117	2.933	1.196	7.530	3.368	2.453	0.137	6.834	6.460	4.492	5.387	11.364	9.382	10.292	5.263	12.051	12.420	2.588	3.372	4.476	7.338	nan	8.430	2.551	4.746	5.943	5.980	7.563	6.608	5.136	2.275	3.565	2.776	0.893	0.874	3.691	7.530	0.565	2.933	1.096	2.231
2845	chr15	37383875	37406845	+	0	NA	Intergenic	Intergenic	-1860	NM_001220482	4212	Hs.510989	NM_002399	ENSG00000134138	MEIS2	HsT18361|MRG1	Meis homeobox 2	protein-coding	2.871	nan	nan	0.818	1.154	0.623	1.762	2.115	0.315	1.376	1.060	0.459	2.800	4.433	0.128	1.250	2.091	0.647	0.996	2.794	2.525	1.391	0.544	1.519	1.576	2.259	3.084	1.230	2.031	2.067	2.178	1.473	3.295	8.401	6.860	4.072	4.156	1.094	0.706	0.630	1.180	2.818	1.573	1.762	0.459	0.314	0.194	1.349	1.679
581	chr1	155900097	155917091	+	0	NA	Intergenic	Intergenic	-2886	NM_181885	339403	Hs.449914	NM_181885	ENSG00000173080	RXFP4	GPCR142|GPR100|RLN3R2|RXFPR4	relaxin/insulin like family peptide receptor 4	protein-coding	nan	nan	2.448	1.760	2.183	1.198	1.840	1.542	0.257	1.584	0.867	1.556	10.474	1.586	0.093	2.589	2.852	2.973	4.900	3.474	nan	3.084	1.281	1.850	1.813	2.135	2.944	4.765	4.363	2.539	2.098	3.201	4.399	1.740	2.282	2.428	3.355	1.745	1.055	0.919	1.884	0.388	0.624	1.840	1.556	0.438	2.935	1.361	0.784
4676	chr2	205188208	205238506	+	0	NA	Intergenic	L1ME1|LINE|L1	-197159	NM_152526	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	1.013	nan	1.105	0.130	0.287	0.108	0.219	0.162	0.084	0.119	0.109	0.299	0.370	0.017	0.069	0.506	0.304	0.657	0.587	0.339	0.394	0.393	0.108	13.152	13.439	0.415	0.725	0.709	0.580	0.876	0.762	0.175	0.258	0.363	0.282	0.457	0.827	0.474	0.356	0.106	0.066	0.110	0.248	0.219	0.299	0.187	0.036	0.043	0.212
4200	chr2	7147236	7156706	+	0	NA	intron (NM_014746, intron 3 of 8)	intron (NM_014746, intron 3 of 8)	66040	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA	1.096	0.906	1.473	1.415	0.925	0.421	0.612	0.696	0.103	0.751	0.309	2.115	3.169	0.069	0.123	0.347	0.374	0.258	0.651	3.352	2.959	2.443	0.670	0.152	0.168	1.012	1.370	2.306	3.420	2.017	2.029	0.261	0.213	0.201	0.271	0.780	1.767	4.520	2.067	0.553	1.288	0.051	0.143	0.612	2.115	0.224	4.378	0.030	1.564
678	chr1	178203315	178213194	+	0	NA	intron (NM_170692, intron 1 of 17)	intron (NM_170692, intron 1 of 17)	-102352	NM_004841	9462	Hs.496139	NM_004841	ENSG00000075391	RASAL2	NGAP	RAS protein activator like 2	protein-coding	nan	nan	nan	0.088	0.232	0.196	0.478	1.942	0.260	0.096	0.161	0.037	0.370	0.299	0.116	0.504	0.321	3.265	12.625	nan	0.557	0.430	0.204	0.314	0.345	0.613	0.830	0.443	0.451	0.454	0.152	0.285	0.593	0.104	0.184	0.466	nan	0.276	0.414	0.028	0.175		0.097	0.478	0.037	0.020	0.020	0.130	0.202
3862	chr18	60188893	60195332	+	0	NA	intron (NR_126534, intron 1 of 14)	intron (NR_126534, intron 1 of 14)	1454	NR_126534	54877	Hs.114191	NM_017742	ENSG00000141664	ZCCHC2	C18orf49	zinc finger CCHC-type containing 2	protein-coding	2.983	3.731	3.672	5.677	3.539	2.126	5.877	1.893	0.176	1.175	0.602	6.366	12.289	2.340	0.120	4.254	6.578	4.280	6.883	10.308	7.737	10.111	4.052	16.246	16.848	1.649	nan	8.278	11.921	3.795	4.844	2.814	6.012	4.030	3.744	2.399	2.522	5.176	3.392	1.955	4.089	1.066	3.225	5.877	6.366	0.601	5.958	1.598	0.924
1517	chr11	72847942	72859762	+	0	NA	promoter-TSS (NM_014824)	promoter-TSS (NM_014824)	-709	NM_014824	9873	Hs.744959	NM_014824	ENSG00000137478	FCHSD2	NWK|SH3MD3	FCH and double SH3 domains 2	protein-coding	nan	2.034	1.869	2.035	1.734	0.879	1.449	0.854	0.146	0.730	0.453	1.711	4.290	1.958	0.155	5.293	6.398	3.880	2.980	4.754	3.968	2.778	1.243	12.145	12.427	2.013	2.750	5.243	6.658	1.813	2.154	2.090	4.435	2.669	2.215	2.302	2.698	1.902	1.107	2.739	2.796	0.629	3.063	1.449	1.711	0.358	1.639	1.865	0.947
2808	chr14	106234091	106243781	+	0	NA	Intergenic	Intergenic	85408	NR_039730	100616135		NR_039730	ENSG00000264024	MIR4507	-	microRNA 4507	ncRNA	1.228	0.473	3.792	0.117	0.104	0.016	0.102	0.078	0.033	0.048	0.050	0.025	0.273	0.033	0.072	0.416	0.348	0.100	0.157	0.247	0.345	0.350	0.139	0.096	0.055	0.170	0.311	0.125	0.157	0.437	0.574	0.418	0.235	0.233	0.192	0.085	0.067	0.075	0.104	6.311	0.037	0.068	0.041	0.102	0.025	0.359	0.011	0.041	0.052
1975	chr12	57908046	57918637	+	0	NA	promoter-TSS (NR_030346)	promoter-TSS (NR_030346)	-299	NR_030346	693201		NR_030346	ENSG00000208028	MIR616	MIRN616|hsa-mir-616	microRNA 616	ncRNA	nan	3.344	2.442	3.460	4.864	2.771	3.315	3.945	0.606	2.283	1.140	3.066	10.236	3.794	0.157	nan	6.239	4.140	6.933	5.822	nan	5.208	3.628	11.692	11.745	2.592	nan	8.235	nan	4.602	4.958	4.170	6.152	4.415	6.303	4.249	7.564	3.134	1.342	1.462	6.587	1.181	2.639	3.315	3.066	1.381	2.072	3.056	2.306
1973	chr12	57613590	57639891	+	0	NA	intron (NR_048562, intron 6 of 10)	intron (NR_048562, intron 6 of 10)	2591	NR_048562	6472	Hs.741179	NM_005412	ENSG00000182199	SHMT2	GLYA|HEL-S-51e|SHMT	serine hydroxymethyltransferase 2	protein-coding	nan	1.968	2.000	2.554	2.847	1.422	2.846	1.346	0.122	1.194	0.424	1.726	4.407	0.573	0.078	nan	8.526	3.080	2.595	4.224	nan	3.895	1.258	7.653	7.900	1.331	nan	4.199	nan	2.427	2.407	3.047	6.500	2.281	2.578	2.185	5.201	2.382	1.377	1.655	3.813	0.775	0.685	2.846	1.726	1.091	1.566	4.083	1.495
8214	chr9	97663861	97688904	+	0	NA	intron (NM_032823, intron 5 of 14)	intron (NM_032823, intron 5 of 14)	104138	NR_031755	100313780		NR_031755	ENSG00000252153	MIR2278	mir-2278	microRNA 2278	ncRNA	0.850	nan	1.035	0.412	1.011	0.620	0.519	1.312	0.217	0.432	0.251	1.357	0.535	0.127	0.074	0.666	0.795	2.765	nan	0.647	0.778	0.599	0.386	0.293	0.275	0.325	0.626	1.796	2.368	0.650	0.324	1.010	1.757	0.716	0.991	0.325	0.586	1.371	0.875	0.306	0.103	0.221	0.163	0.519	1.357	0.139	0.563	1.197	0.143
6797	chr6	48150670	48164437	+	0	NA	Intergenic	Intergenic	-121128	NM_207499	442213	Hs.659409	NM_207499	ENSG00000244694	PTCHD4	C6orf138|PTCH53|dJ402H5.2	patched domain containing 4	protein-coding	0.803	0.948	0.859	0.173	0.301	0.209	0.298	0.190	0.093	0.192	0.178	0.113	0.377	0.048	0.088	0.525	0.357	0.907	0.403	0.190	0.334	6.886	7.488	0.517	0.546	0.577	0.774	0.538	nan	0.315	0.086	0.089	0.226	1.228	2.391	0.316	0.368	0.613	0.505	0.004	0.045	0.386	0.144	0.298	0.113	0.007	0.192	0.101	0.107
2302	chr13	50693439	50705323	+	0	NA	intron (NR_109974, intron 2 of 6)	CpG	296	NR_002612	8847	Hs.547964	NR_002612	ENSG00000231607	DLEU2	1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS	deleted in lymphocytic leukemia 2 (non-protein coding)	ncRNA	4.333	nan	nan	3.758	2.918	1.144	1.869	2.885	0.169	1.955	0.899	5.756	4.138	2.585	0.102	5.757	6.648	2.571	3.672	9.881	8.107	nan	4.057	6.653	6.228	2.913	3.585	4.639	7.580	5.921	6.465	3.297	6.104	4.322	4.878	6.389	nan	0.928	0.470	3.917	5.763	1.294	2.665	1.869	5.756	1.644	1.288	2.715	2.185
4827	chr20	6207410	6212787	+	0	NA	Intergenic	Intergenic	-105907	NM_017671	55612	Hs.472054	NM_017671	ENSG00000101311	FERMT1	C20orf42|DTGCU2|KIND1|UNC112A|URP1	fermitin family member 1	protein-coding	0.844	1.344	0.571	0.146	0.260	0.089	0.095	0.113	0.120	0.088	0.137	0.066	0.314	0.020	0.044	0.657	0.339	8.422	1.342	0.275	0.405	0.388	0.211	3.978	4.269	0.190	0.257	0.345	0.426	1.240	1.177	0.213	0.374	0.071	0.145	0.184	0.238	0.377	0.460	0.021	0.083	0.072	0.103	0.095	0.066	0.090	0.076	0.184	0.062
3849	chr18	56861890	56876859	+	0	NA	Intergenic	MIRb|SINE|MIR	-18026	NM_001012513	2922	Hs.153444	NM_002091	ENSG00000134443	GRP	BN|GRP-10|preproGRP|proGRP	gastrin releasing peptide	protein-coding	nan	0.874	0.844	0.340	0.371	0.129	0.473	0.060	0.130	0.223	0.162	0.926	0.593	0.014	0.075	0.377	0.213	0.250	0.336	1.579	1.698	1.471	0.436	0.421	0.558	0.095	0.232	1.047	0.925	0.417	0.246	0.185	0.178	0.739	0.785	0.162	0.305	nan	2.119	0.148	0.079	0.190	0.139	0.473	0.926	0.051	0.367	0.027	0.090
2745	chr14	93547815	93568096	+	0	NA	intron (NM_001142593, intron 2 of 10)	intron (NM_001142593, intron 2 of 10)	24158	NR_002808	319085	Hs.612888	NR_002808	ENSG00000258730	ITPK1-AS1	C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203	ITPK1 antisense RNA 1	ncRNA	1.616	1.229	nan	0.315	0.428	0.191	1.121	0.325	0.190	0.394	0.318	0.535	1.077	0.134	0.077	0.446	0.616	0.856	3.324	1.714	1.605	0.999	0.289	0.866	0.832	0.941	1.282	1.094	1.477	3.689	3.333	0.376	0.465	0.405	0.593	0.748	1.211	nan	1.253	0.704	0.246	0.075	0.188	1.121	0.535	0.305	0.066	0.024	0.524
2400	chr13	100552744	100569043	+	0	NA	non-coding (NR_104592, exon 10 of 10)	non-coding (NR_104592, exon 10 of 10)	48526	NR_120421	101927437	Hs.619936	NR_120421		LOC101927437	-	uncharacterized LOC101927437	ncRNA	1.046	3.403	2.546	3.048	0.331	0.118	2.720	0.166	0.078	1.300	1.096	0.205	2.260	0.081	0.061	0.768	0.527	0.369	0.344	0.881	1.147	4.440	1.117	0.165	0.247	0.868	nan	1.487	1.383	0.586	0.306	0.225	0.321	3.558	4.185	0.239	nan	1.447	0.578	0.297	1.352	1.146	0.204	2.720	0.205	0.336	1.023	0.018	0.046
2034	chr12	78600600	78607747	+	0	NA	intron (NM_014903, intron 38 of 38)	intron (NM_014903, intron 38 of 38)	149353	NR_135021	105369860	Hs.156898	NR_135021	ENSG00000258220	LOC105369860	-	uncharacterized LOC105369860	ncRNA	nan	2.443	3.774	3.569	8.093	3.815	1.517	0.489	0.224	1.381	0.843	5.592	7.871	0.030	0.062	0.492	0.616	0.256	0.357	6.504	8.146	5.709	1.690	0.219	0.231	3.013	4.064	8.895	9.523	5.148	5.558	0.122	0.353	3.300	5.394	2.384	4.226	nan	1.422	2.533	1.683	0.959	1.704	1.517	5.592	1.145	1.845	0.041	1.607
4405	chr2	74733211	74743627	+	0	NA	Intergenic	Intergenic	-3177	NM_016170	3196	Hs.168586	NM_016170	ENSG00000115297	TLX2	HOX11L1|NCX	T-cell leukemia homeobox 2	protein-coding	nan	nan	2.644	1.825	2.149	1.200	1.462	1.271	0.246	0.814	0.369	1.650	3.597	2.033	0.132	1.532	1.865	2.915	4.444	3.406	3.286	4.581	1.931	3.461	3.856	1.436	1.800	2.615	2.845	4.434	3.706	1.365	1.993	0.855	1.210	6.694	11.856	nan	0.807	1.641	0.799	0.248	4.571	1.462	1.650	1.107	0.971	0.532	5.567
2029	chr12	76204933	76215598	+	0	NA	Intergenic	Intergenic	215291	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding	nan	1.649	0.700	0.311	0.518	0.331	1.235	0.405	0.224	0.384	0.389	0.587	0.634	0.041	0.061	0.436	0.316	0.353	0.543	2.286	2.090	0.786	0.436	0.280	0.203	3.754	4.715	nan	1.028	2.796	2.756	0.209	0.299	1.014	1.203	0.453	0.933	nan	1.388	0.142	0.286	0.417	0.364	1.235	0.587	0.778	0.277	0.068	0.393
3552	chr17	73147342	73151597	+	0	NA	promoter-TSS (NM_001288610)	promoter-TSS (NM_001288610)	-81	NM_001288610	51155	Hs.532803	NM_016185	ENSG00000189159	HN1	ARM2|HN1A	hematological and neurological expressed 1	protein-coding	8.787	3.875	4.355	5.053	6.051	3.450	4.139	2.259	0.457	5.508	2.283	5.205	14.247	4.340	0.250	8.810	10.717	4.793	6.171	10.522	7.302	8.788	2.448	9.554	10.455	nan	9.050	6.258	12.527	14.936	20.523	3.816	8.047	10.013	7.839	7.818	7.445	nan	3.315	3.950	4.470	1.538	3.369	4.139	5.205	1.364	4.753	2.308	2.016
5671	chr3	173448086	173508138	+	0	NA	intron (NM_014932, intron 3 of 6)	L2c|LINE|L2	160474	NR_046664	100874010	Hs.624265	NR_046664	ENSG00000228213	NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA	0.950	1.446	0.758	0.131	1.296	0.761	0.195	0.165	0.115	0.335	0.245	0.147	0.220	0.038	0.093	0.330	0.257	1.016	0.650	0.316	0.401	1.737	0.651	0.359	0.326	4.678	4.550	0.329	0.360	0.640	0.299	0.230	0.308	1.966	3.251	0.363	0.605	0.469	0.420	0.089	0.072	0.513	0.132	0.195	0.147	0.015	0.045	0.069	0.068
8153	chr9	72652905	72653692	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-5199	NM_001347990	256691	Hs.547172	NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding	nan	nan	nan	3.843	6.065	4.018	5.261	1.726	14.800	3.351	7.476	2.093	7.360	2.181	6.063	9.536	4.360	3.855	nan	9.035	nan	4.133	3.803	5.596	5.823	9.414	11.534	4.587	5.542	13.025	3.936	3.214	6.479	3.484	7.006	4.870	7.914	5.563	8.417	0.349	4.350	1.583	1.899	5.261	2.093	0.737	1.591	1.387	1.416
2723	chr14	89001684	89030873	+	0	NA	intron (NM_007039, intron 2 of 18)	AluSg|SINE|Alu	4845	NM_007039	11099	Hs.437040	NM_007039	ENSG00000070778	PTPN21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	2.246	0.966	nan	0.702	0.600	0.299	0.829	0.778	0.209	0.215	0.188	0.221	1.064	0.935	0.129	0.807	0.958	0.527	0.954	0.783	0.751	1.282	0.584	1.051	1.103	1.259	1.850	0.480	0.685	2.256	1.664	0.571	0.845	0.657	0.646	1.896	4.355	nan	1.037	0.362	0.445	0.084	0.674	0.829	0.221	0.190	0.675	0.197	2.208
4218	chr2	12067718	12081082	+	0	NA	Intergenic	Intergenic	-72842	NR_110197	100506457	Hs.197824	NR_110196	ENSG00000224184	MIR3681HG	-	MIR3681 host gene	ncRNA	0.680	0.583	0.633	0.158	0.128	0.108	0.181	0.106	0.105	0.070	0.080	0.165	0.789	0.038	0.113	0.314	0.141	0.199	0.253	0.337	0.324	0.127	0.080	0.094	0.111	0.358	0.600	0.936	nan	0.371	0.206	0.151	0.195	0.093	0.056	0.193	nan	0.546	0.471	0.062	0.174	0.014	0.030	0.181	0.165	0.146	5.034	0.023	0.046
775	chr1	201616436	201707278	+	0	NA	intron (NR_046696, intron 2 of 2)	intron (NR_046696, intron 2 of 2)	-26779	NR_049823	100847050		NR_049823	ENSG00000264802	MIR5191	-	microRNA 5191	ncRNA	2.074	1.811	1.760	0.307	1.417	0.835	1.643	0.907	0.269	0.524	0.360	0.686	1.359	0.113	0.109	1.098	1.594	0.779	1.119	2.056	1.824	1.390	0.475	nan	nan	1.448	2.421	1.044	1.678	1.810	1.697	0.361	0.588	1.179	1.093	0.639	1.344	1.344	0.858	0.406	0.614	0.398	0.301	1.643	0.686	0.663	0.491	0.214	0.444
5668	chr3	173111057	173123678	+	0	NA	intron (NM_014932, intron 1 of 6)	L3|LINE|CR1	1129	NM_014932	22871	Hs.478289	NM_014932	ENSG00000169760	NLGN1	NL1	neuroligin 1	protein-coding	1.002	3.282	1.134	0.897	3.568	1.904	1.205	0.141	0.089	1.967	1.339	1.587	5.792	0.325	0.061	0.714	0.730	0.161	0.236	4.299	3.215	6.800	2.899	2.150	2.464	6.445	6.907	1.205	2.015	1.683	1.958	0.370	0.600	5.617	6.133	0.641	0.929	1.881	1.208	1.065	0.749	1.420	0.593	1.205	1.587	0.023	1.109	0.126	0.256
20	chr1	1547054	1552929	+	0	NA	promoter-TSS (NM_001170686)	promoter-TSS (NM_001170686)	-804	NM_001170686	142678	Hs.135805	NM_080875	ENSG00000197530	MIB2	ZZANK1|ZZZ5	mindbomb E3 ubiquitin protein ligase 2	protein-coding	3.125	nan	4.301	4.360	2.994	1.420	1.264	1.857	0.437	0.935	0.498	1.343	5.546	2.106	0.119	2.160	2.513	3.609	5.108	5.767	5.867	2.814	1.797	6.353	6.760	2.486	nan	nan	9.866	nan	2.949	1.361	2.624	1.516	1.620	3.194	3.250	1.878	1.070	2.859	4.460	0.274	0.579	1.264	1.343	0.895	1.537	0.708	1.200
1983	chr12	59153014	59169801	+	0	NA	intron (NR_120452, intron 1 of 7)	L2a|LINE|L2	14091	NR_120452	101927653	Hs.130744	NR_120452	ENSG00000257259	LOC101927653	-	uncharacterized LOC101927653	ncRNA	nan	1.500	0.735	1.378	1.385	0.782	0.150	0.229	0.087	0.574	0.256	0.566	1.232	0.026	0.104	nan	0.221	0.479	0.220	0.549	nan	4.410	3.776	0.250	0.287	0.538	nan	1.930	nan	0.338	0.151	0.180	0.381	1.097	0.627	0.144	0.239	1.416	1.151	0.017	0.746	0.192	0.061	0.150	0.566	0.035	0.320	0.266	0.044
4304	chr2	41941875	41956883	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-155316	NR_033996	388942	Hs.631883	NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA	1.032	nan	0.972	0.498	2.209	1.270	0.766	0.392	0.150	0.302	0.349	1.037	2.975	0.051	0.144	0.315	0.254	0.319	0.420	nan	0.968	3.949	1.414	0.283	0.277	0.182	0.374	0.876	1.077	0.410	0.197	0.168	0.336	1.346	1.300	0.576	nan	nan	1.169	0.118	3.521	0.451	0.048	0.766	1.037		0.284	0.086	0.492
4180	chr2	2950656	2956449	+	0	NA	intron (NR_110228, intron 5 of 6)	MIRb|SINE|MIR	176246	NR_110228	101927554	Hs.638446	NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA	0.496	1.043	0.576	0.272	0.554	0.464	0.324	0.069	0.055	0.108	0.113	0.431	4.242	0.018	0.118	0.248	0.226	0.242	0.308	1.552	1.233	0.809	0.287	0.078	0.056	0.222	0.525	4.417	2.891	0.326	0.211	0.095	0.182	0.044	0.047	0.300	0.252	1.068	0.696	10.356	0.873	0.029	0.082	0.324	0.431	0.051	0.275	0.018	0.073
4139	chr19	50378297	50382737	+	0	NA	promoter-TSS (NM_024682)	promoter-TSS (NM_024682)	127	NM_001098632	84335	Hs.515542	NM_032375	ENSG00000204673	AKT1S1	Lobe|PRAS40	AKT1 substrate 1	protein-coding	7.369	4.427	5.594	6.500	13.338	6.798	4.787	4.894	0.328	2.590	1.128	6.903	13.186	8.024	0.215	8.731	7.337	8.065	13.276	10.112	10.605	11.289	11.066	26.536	29.012	8.132	9.542	11.343	14.508	15.276	14.162	4.145	5.447	7.113	10.081	11.062	10.296	5.435	2.711	4.935	9.060	1.721	3.468	4.787	6.903	2.371	4.045	3.237	4.400
468	chr1	117026151	117042453	+	0	NA	Intergenic	Intergenic	-12854	NR_125973	101929023	Hs.668091	NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA	nan	1.582	1.030	0.181	0.321	0.167	0.689	0.197	0.079	0.088	0.046	0.235	0.572	0.094	0.107	0.787	0.871	4.469	8.262	0.713	nan	0.873	0.309	0.325	0.405	0.622	1.125	0.729	0.730	0.661	0.493	1.040	1.375	0.146	0.264	0.338	0.658	0.719	0.663	0.271	0.165	0.023	0.130	0.689	0.235	0.166	0.180	0.406	0.090
3030	chr16	2798122	2805496	+	0	NA	promoter-TSS (NM_016333)	promoter-TSS (NM_016333)	-521	NM_016333	23524	Hs.433343	NM_016333	ENSG00000167978	SRRM2	300-KD|CWF21|Cwc21|HSPC075|SRL300|SRm300	serine/arginine repetitive matrix 2	protein-coding	4.567	nan	4.624	7.851	6.643	3.891	4.431	1.588	0.371	2.847	1.166	2.567	9.836	2.384	0.123	6.593	5.945	3.589	5.044	5.812	6.166	10.451	6.552	14.506	15.210	4.385	nan	5.612	8.679	9.603	9.590	3.162	5.288	6.952	8.482	7.895	6.531	4.788	2.102	4.199	6.753	1.837	3.177	4.431	2.567	1.518	2.831	1.406	2.013
7247	chr7	32928989	32933830	+	0	NA	promoter-TSS (NM_015483)	promoter-TSS (NM_015483)	59	NM_015483	25948	Hs.372541	NM_015483	ENSG00000170852	KBTBD2	BKLHD1	kelch repeat and BTB domain containing 2	protein-coding	8.166	5.415	7.456	6.905	6.101	2.886	4.347	5.482	0.633	3.159	1.310	8.934	13.712	12.303	0.241	10.709	13.226	10.237	12.643	11.186	9.829	9.166	4.004	22.950	22.472	4.549	nan	nan	nan	7.927	7.500	3.922	8.356	7.759	8.751	7.811	9.225	2.717	1.620	4.834	5.294	1.920	5.621	4.347	8.934	1.498	6.168	3.937	3.589
78	chr1	10648560	10660028	+	0	NA	intron (NM_004565, intron 3 of 8)	intron (NM_004565, intron 3 of 8)	119291	NM_004565	5195	Hs.149983	NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding	1.095	0.805	nan	1.352	0.443	0.246	0.333	0.132	0.113	0.302	0.238	0.709	0.548	0.135	0.090	0.844	1.396	0.478	0.669	1.461	2.062	0.258	0.109	0.554	nan	0.547	nan	7.983	8.754	nan	0.662	1.678	2.034	0.102	0.158	0.552	0.932	1.382	0.888	0.170	0.388	0.042	0.057	0.333	0.709	0.110	0.442	2.036	0.668
6612	chr6	10510057	10531318	+	0	NA	promoter-TSS (NM_145649)	promoter-TSS (NM_145649)	-881	NM_145649	2651	Hs.519884	NM_001491	ENSG00000111846	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)	protein-coding	0.940	nan	0.855	0.587	0.686	0.302	0.531	0.169	0.167	0.290	0.193	0.690	0.257	0.516	0.116	1.228	1.570	5.420	6.896	0.442	0.586	1.459	0.302	1.533	1.639	0.391	0.550	0.485	0.631	0.473	0.254	0.940	1.049	0.979	1.368	0.227	0.376	0.887	0.596	0.055	0.169	0.124	0.192	0.531	0.690	0.023	0.209	0.557	0.110
5571	chr3	139692649	139701514	+	0	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	43054	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding	1.272	nan	nan	0.173	0.788	0.525	0.247	0.077	0.182	0.324	0.253	0.081	0.313	0.036	0.082	0.343	0.273	0.445	0.500	0.497	0.571	8.097	2.410	0.290	0.332	3.225	4.245	0.220	0.270	nan	2.412	0.325	0.635	1.511	0.744	0.594	0.743	0.844	0.743	0.383	0.111	0.398	0.074	0.247	0.081	0.478	0.034	0.056	0.165
413	chr1	98381861	98404783	+	0	NA	Intergenic	Intergenic	-6707	NM_000110	1806	Hs.335034	NM_000110	ENSG00000188641	DPYD	DHP|DHPDHASE|DPD	dihydropyrimidine dehydrogenase	protein-coding	nan	nan	1.250	0.120	1.102	0.525	0.398	1.164	0.233	0.288	0.218	0.066	1.037	0.412	0.111	0.335	0.356	0.578	0.988	1.141	nan	0.575	0.251	0.351	0.380	3.770	nan	0.606	0.899	nan	1.120	0.214	0.314	0.657	0.596	0.523	1.100	0.908	0.679	0.024	0.132	0.225	0.198	0.398	0.066	0.114	0.231	0.082	0.265
294	chr1	48142262	48157194	+	0	NA	Intergenic	L3|LINE|CR1	-246739	NR_126355	102724077	Hs.159718	NR_126355		LINC01389	-	long intergenic non-protein coding RNA 1389	ncRNA	nan	0.729	nan	0.064	0.384	0.198	0.464	0.096	0.141	0.095	0.178	0.064	0.413	5.680	0.161	0.328	0.315	0.187	0.306	0.531	0.646	0.116	0.052	0.314	0.292	0.159	nan	nan	0.576	0.329	0.169	0.232	nan	0.137	0.132	0.222	0.329	0.632	0.603	0.157	0.189	0.024	0.084	0.464	0.064	0.058	0.020	0.039	0.034
764	chr1	198794323	198802500	+	0	NA	intron (NR_040073, intron 2 of 2)	HUERS-P2-int|LTR|ERV1	29700	NR_029612	406955		NR_029612	ENSG00000207975	MIR181B1	MIRN181B1|mir-181b-1	microRNA 181b-1	ncRNA	0.819	nan	1.012	0.145	0.353	0.118	0.439	0.237	0.078	0.232	0.237	0.190	0.348	0.055	0.089	0.536	0.347	0.812	1.008	0.465	0.533	0.212	0.153	0.297	0.282	5.127	4.822	0.332	0.327	0.280	0.188	0.068	0.293	0.165	0.136	0.407	0.645	0.490	0.643	0.008	0.055	0.046		0.439	0.190		0.024	0.050	0.212
7575	chr8	2567920	2591948	+	0	NA	intron (NR_125426, intron 1 of 2)	ERV3-16A3_I-int|LTR|ERVL	6057	NR_125426	101927815	Hs.571467	NR_125423	ENSG00000254319	LOC101927815	-	uncharacterized LOC101927815	ncRNA	0.905	0.570	0.509	0.048	0.636	0.340	0.133	0.074	0.067	1.231	0.757	1.762	0.097	1.132	0.140	1.432	1.638	0.435	0.462	0.904	0.927	0.177	0.118	0.188	0.170	2.270	2.560	3.940	5.161	nan	2.444	0.838	1.351	1.492	1.522	0.156	0.214	2.233	1.270	2.005	0.104	0.210	0.017	0.133	1.762	0.004	0.080	0.639	0.053
2075	chr12	92467868	92479668	+	0	NA	intron (NR_132341, intron 1 of 4)	AluSg|SINE|Alu	61721	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA	0.876	1.041	0.809	0.371	0.243	0.125	0.238	2.143	0.301	0.120	0.105	0.121	nan	0.046	0.088	1.149	1.580	4.843	6.175	0.615	0.792	0.622	0.281	1.469	1.428	1.139	nan	0.567	nan	0.456	0.360	1.462	2.768	0.239	0.611	0.294	0.624	1.092	0.868	0.400	0.182	0.049	0.143	0.238	0.121	0.074	0.129	4.430	0.084
4582	chr2	166928359	166949244	+	0	NA	intron (NR_110260, intron 1 of 11)	MIR3|SINE|MIR	760	NR_110260	101929680	Hs.662210	NR_110260	ENSG00000236107	LOC101929680	-	uncharacterized LOC101929680	ncRNA	1.416	0.952	nan	0.110	0.344	0.185	0.146	0.087	0.056	0.060	0.095	0.073	0.305	0.026	0.068	0.332	0.207	0.221	0.431	0.277	0.257	0.292	0.155	0.248	0.210	0.741	0.765	0.248	0.248	5.329	4.657	0.136	0.271	3.340	5.379	0.979	2.151	0.488	0.384	0.029	0.039	1.374	0.230	0.146	0.073	0.070	0.077	0.086	1.480
1981	chr12	58890297	58902676	+	0	NA	Intergenic	Intergenic	-88998	NR_126341	100506869	Hs.290456	NR_126341	ENSG00000258231	LOC100506869	-	uncharacterized LOC100506869	ncRNA	nan	1.918	0.808	2.446	1.631	0.695	0.932	0.399	0.052	3.050	1.462	2.175	2.142	0.026	0.080	nan	0.888	0.675	0.758	1.807	nan	8.575	5.979	0.312	0.315	0.304	nan	2.498	nan	0.385	0.204	0.167	0.409	4.852	4.752	0.288	0.581	7.020	2.954	0.009	0.704	1.446	0.167	0.932	2.175	0.421	0.354	0.076	0.410
7634	chr8	31495906	31502722	+	0	NA	intron (NM_013962, intron 1 of 4)	intron (NM_013962, intron 1 of 4)	2046	NM_013962	3084	Hs.453951	NM_004495	ENSG00000157168	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding	0.528	3.956	nan	0.694	0.236	0.097	0.452	0.065	0.119	0.691	0.481	0.052	15.565	2.602	0.190	0.268	0.299	0.164	0.362	1.989	1.388	0.270	0.089	0.186	0.195	0.395	0.534	0.790	0.681	1.107	1.634	1.046	2.954	1.031	1.041	0.162	0.327	2.657	1.349	1.827	2.029	0.184	0.197	0.452	0.052	0.128	1.192	0.930	0.055
3559	chr17	74070162	74082707	+	0	NA	TTS (NM_001282313)	TTS (NM_001282313)	1171	NM_180990	353174	Hs.714919	NM_180990	ENSG00000186919	ZACN	L2|LGICZ|LGICZ1|ZAC|ZAC1	zinc activated ion channel	protein-coding	1.033	0.746	0.825	0.224	0.619	0.268	0.176	0.155	0.104	0.326	0.205	0.297	3.990	0.146	0.095	0.535	0.600	0.245	0.388	3.793	3.009	1.537	0.334	0.447	0.465	nan	0.429	1.691	1.604	0.585	0.311	0.418	0.456	0.469	0.352	0.246	0.353	nan	0.781	5.325	2.893	0.068	0.057	0.176	0.297	0.023	0.328	0.039	0.093
2522	chr14	30203583	30232591	+	0	NA	intron (NM_001330069, intron 1 of 18)	intron (NM_001330069, intron 1 of 18)	178812	NM_002742	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding	1.509	0.864	1.393	0.346	0.602	0.381	0.329	1.339	0.145	0.377	0.286	0.585	0.448	0.093	0.115	0.188	0.139	0.496	0.430	0.556	0.653	2.404	0.722	0.242	0.278	3.732	4.330	1.337	1.106	0.624	0.276	0.128	0.196	1.566	1.706	0.208	0.457	0.652	0.538	0.186	0.158	0.308	0.092	0.329	0.585	0.043	0.871	0.035	0.089
5922	chr4	66516089	66537992	+	0	NA	intron (NM_004439, intron 1 of 17)	intron (NM_004439, intron 1 of 17)	8166	NM_001318761	2044	Hs.654492	NM_004439	ENSG00000145242	EPHA5	CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4	EPH receptor A5	protein-coding	nan	nan	0.851	0.448	0.247	0.073	1.262	1.290	0.168	0.078	0.086	0.164	0.751	0.123	0.066	0.407	0.416	0.393	0.649	0.490	0.460	0.243	0.091	0.293	0.332	1.415	1.623	0.485	0.524	0.564	0.416	0.110	0.275	2.838	3.708	0.220	0.442	0.265	0.262	0.046	0.135	0.894	0.301	1.262	0.164	0.188	0.208	0.049	0.079
7777	chr8	86838631	86855544	+	0	NA	Intergenic	Intergenic	-6916	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog-like 2, pseudogene	pseudo	0.941	nan	nan	0.105	0.439	0.223	4.238	0.156	0.171	0.027	0.091	0.097	0.352	0.386	0.096	0.355	0.126	0.289	0.322	0.331	0.417	0.104	0.105	0.137	0.162	0.296	0.458	nan	0.423	0.286	0.061	0.137	0.262	0.092	0.201	0.217	0.288	0.205	0.346	0.102	0.092	0.107	0.071	4.238	0.097	0.029	0.061	0.025	0.029
6220	chr5	32168035	32176359	+	0	NA	intron (NM_022130, intron 1 of 3)	intron (NM_022130, intron 1 of 3)	2228	NM_022130	64083	Hs.408909	NM_022130	ENSG00000113384	GOLPH3	GOPP1|GPP34|MIDAS|Vps74	golgi phosphoprotein 3	protein-coding	3.753	5.315	nan	10.940	3.000	1.830	2.323	5.809	1.103	4.608	2.189	8.687	11.133	3.551	0.171	5.567	5.822	4.961	7.097	9.057	7.866	7.108	4.502	9.994	10.362	5.609	7.043	8.686	11.625	11.185	12.098	3.033	6.466	7.305	7.534	5.081	4.723	3.704	2.086	3.558	3.991	1.644	2.624	2.323	8.687	1.821	4.869	1.641	2.263
2583	chr14	50315399	50337018	+	0	NA	Intergenic	AluSp|SINE|Alu	-6287	NM_001301732	9147	Hs.655964	NM_004713	ENSG00000165525	NEMF	NY-CO-1|SDCCAG1	nuclear export mediator factor	protein-coding	nan	nan	1.946	1.996	1.315	0.778	1.313	1.420	0.202	0.493	0.397	1.119	4.127	1.733	0.146	1.585	1.776	2.060	2.975	2.444	2.139	3.553	1.323	4.211	4.467	1.786	2.107	2.559	3.440	3.443	3.030	1.124	2.051	2.832	3.227	1.418	2.806	nan	1.125	1.030	1.252	0.490	0.643	1.313	1.119	0.329	0.982	0.686	0.659
2589	chr14	51669936	51686718	+	0	NA	Intergenic	Intergenic	-28559	NM_030755	81542	Hs.125221	NM_030755	ENSG00000139921	TMX1	PDIA11|TMX|TXNDC|TXNDC1	thioredoxin related transmembrane protein 1	protein-coding	nan	nan	2.643	4.094	0.771	0.298	0.213	0.243	0.095	1.287	0.771	1.918	1.371	0.058	0.095	0.316	0.268	0.192	0.307	3.850	5.081	1.733	0.460	0.400	0.365	1.084	1.340	5.060	3.851	4.256	4.175	0.119	0.274	2.403	3.194	0.503	1.984	nan	1.998	3.317	0.722	0.839	0.137	0.213	1.918	0.083	2.262	0.029	0.641
2814	chr14	107247901	107261847	+	0	NA	Intergenic	L1PBb|LINE|L1	4340	NR_049827	100847062		NR_049827	ENSG00000265929	MIR5195	-	microRNA 5195	ncRNA	1.359	1.368	0.577	0.082	3.583	1.751	0.165	0.304	0.172	0.147	0.094	2.007	3.088	0.095	0.123	6.537	8.475	0.711	1.166	0.696	0.833	0.706	0.252	5.446	5.101	0.174	0.260	0.739	1.359	0.716	0.366	4.800	6.594	0.105	0.147	0.088	0.188	0.114	0.106	0.804	5.989	0.034	0.040	0.165	2.007	0.071	0.131	4.654	0.106
710	chr1	183437071	183453288	+	0	NA	intron (NM_001174061, intron 1 of 21)	intron (NM_001174061, intron 1 of 21)	3673	NM_173156	9887	Hs.591463	NM_014837	ENSG00000116698	SMG7	C1orf16|EST1C|SGA56M	SMG7, nonsense mediated mRNA decay factor	protein-coding	nan	nan	2.785	1.821	1.843	1.197	2.578	2.084	0.285	1.668	0.733	1.542	4.795	1.464	0.126	3.268	3.820	4.969	6.349	4.937	nan	3.380	1.942	nan	6.667	2.754	3.690	3.974	5.404	3.215	3.294	3.493	5.401	3.671	4.101	4.469	nan	1.851	1.294	1.045	3.463	0.848	1.112	2.578	1.542	0.911	1.032	2.048	1.344
7603	chr8	17267367	17273511	+	0	NA	intron (NM_004686, intron 1 of 13)	intron (NM_004686, intron 1 of 13)	601	NM_004686	9108	Hs.625674	NM_004686	ENSG00000003987	MTMR7	-	myotubularin related protein 7	protein-coding	1.442	2.209	nan	2.897	6.132	3.175	1.463	0.049	0.105	2.636	1.480	6.519	1.794	0.070	0.126	5.460	6.683	0.323	0.229	14.697	13.412	7.966	3.018	8.271	8.635	0.396	0.693	4.986	6.233	3.654	4.199	4.110	5.881	5.566	4.569	0.804	1.301	3.885	1.857	2.190	1.579	1.378	1.939	1.463	6.519	0.440	3.256	3.743	
7087	chr6	161379456	161388705	+	0	NA	Intergenic	Intergenic	-28679	NM_005922	4216	Hs.390428	NM_005922	ENSG00000085511	MAP3K4	MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412	mitogen-activated protein kinase kinase kinase 4	protein-coding	1.621	nan	2.034	0.227	0.260	0.208	0.921	0.130	0.101	0.085	0.114	0.194	0.243	0.047	0.141	0.354	0.174	0.686	2.311	0.347	0.379	0.549	0.144	0.149	0.225	0.498	0.666	0.334	0.396	8.839	8.865	0.223	0.251	0.944	1.306	0.732	1.339	0.465	0.349	0.042	0.019	0.197	0.052	0.921	0.194	0.766	0.053	0.042	0.480
5105	chr21	35894091	35935094	+	0	NA	intron (NM_004414, intron 1 of 3)	MLT1G1|LTR|ERVL-MaLR	-15284	NM_001331016	1827	Hs.282326	NM_004414	ENSG00000159200	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.750	0.689	0.867	0.156	0.273	0.121	0.836	0.823	0.118	0.099	0.083	0.196	0.858	0.059	0.086	1.183	1.049	4.007	5.694	0.462	0.519	1.095	0.382	0.329	0.320	0.184	0.321	0.538	0.556	0.424	0.219	0.371	0.311	0.256	0.342	0.278	0.552	nan	0.693	0.575	0.413	0.047	0.084	0.836	0.196	0.033	0.077	0.058	0.179
112	chr1	17989012	18015365	+	0	NA	intron (NM_001319838, intron 15 of 17)	intron (NM_001319838, intron 15 of 17)	57380	NM_001319838	55160	Hs.443460	NM_018125	ENSG00000074964	ARHGEF10L	GrinchGEF	Rho guanine nucleotide exchange factor 10 like	protein-coding	0.966	0.722	nan	0.037	0.402	0.214	0.439	0.123	0.049	0.117	0.109	0.176	1.158	0.082	0.100	1.746	2.836	0.806	0.517	0.844	0.756	0.427	0.157	0.556	nan	0.927	nan	0.288	0.615	nan	1.739	0.682	1.281	0.071	0.088	0.330	0.560	0.923	0.631	2.580	0.208	0.011	0.142	0.439	0.176	0.360	0.062	1.119	0.070
5935	chr4	74438665	74490567	+	0	NA	intron (NM_201431, intron 2 of 10)	intron (NM_201431, intron 2 of 10)	21671	NM_177532	166824	Hs.529677	NM_177532	ENSG00000169435	RASSF6	-	Ras association domain family member 6	protein-coding	0.793	0.754	0.794	1.513	5.476	2.902	0.391	0.377	0.112	0.923	0.530	4.986	0.515	0.043	0.081	2.655	3.126	1.461	1.014	4.105	4.494	3.867	1.419	7.253	7.233	0.127	0.202	6.094	3.340	0.494	0.218	1.165	2.007	1.106	1.673	0.344	0.664	1.891	0.745	0.194	0.959	0.276	0.296	0.391	4.986	0.075	0.594	1.964	0.153
588	chr1	156250748	156254606	+	0	NA	promoter-TSS (NR_026678)	promoter-TSS (NR_026678)	4	NM_001323615	23381	Hs.516837	NM_015327	ENSG00000198952	SMG5	EST1B|LPTS-RP1|LPTSRP1|SMG-5	SMG5, nonsense mediated mRNA decay factor	protein-coding	5.708	nan	5.331	3.686	3.928	1.843	3.735	3.038	0.291	3.429	1.831	3.873	25.096	4.162	0.184	6.458	6.754	8.831	11.664	7.299	nan	8.398	3.546	6.151	6.312	4.884	6.862	10.320	13.909	5.430	5.543	6.388	10.951	3.721	5.447	8.059	8.450	3.650	1.776	2.320	3.797	0.742	1.685	3.735	3.873	1.082	3.502	2.956	2.031
1684	chr11	117731801	117760860	+	0	NA	intron (NM_001164837, intron 1 of 8)	intron (NM_001164837, intron 1 of 8)	1416	NM_001204268	100533181	Hs.744850	NM_001204268	ENSG00000255245	FXYD6-FXYD2	-	FXYD6-FXYD2 readthrough	protein-coding	1.094	1.242	0.530	0.641	0.827	0.410	1.180	0.057	0.056	1.458	0.736	1.155	3.639	0.232	0.110	2.066	nan	1.108	1.456	2.153	2.031	2.861	0.803	2.147	2.305	1.842	nan	0.917	1.130	0.681	0.698	1.921	3.523	1.227	0.962	0.328	0.595	1.529	0.927	4.565	0.632	0.314	0.463	1.180	1.155	0.550	0.128	2.256	0.102
5097	chr21	34518463	34528174	+	0	NA	Intergenic	Intergenic	19223	NR_024102	728409	Hs.125234	NR_024102	ENSG00000229086	LINC01548	C21orf54	long intergenic non-protein coding RNA 1548	ncRNA	1.922	0.580	0.923	0.180	0.330	0.215	0.447	0.046	0.101	0.097	0.136	0.086	0.342	0.022	0.066	1.814	1.495	5.922	1.038	0.439	0.433	0.098	0.088	2.893	3.323	0.187	0.450	0.340	0.410	7.140	6.488	0.647	0.732	0.047	0.109	0.620	1.643	nan	0.530	0.029	0.156	0.029	0.081	0.447	0.086	2.178	0.070	0.142	0.748
756	chr1	194661739	194677822	+	0	NA	Intergenic	Intergenic	1395905	NR_125789	101929184	Hs.146728	NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA	0.905	nan	0.905	0.080	0.250	0.160	0.094	0.141	0.230	0.127	0.187	0.044	0.262	0.061	0.155	0.411	0.237	0.332	0.452	0.303	0.393	0.137	0.081	0.363	0.367	7.820	6.899	0.361	0.433	1.506	0.859	0.069	0.127	0.103	0.131	0.208	0.277	0.322	0.231	0.010	0.045	0.006	0.030	0.094	0.044	0.103	0.050	0.012	0.052
4422	chr2	86473143	86484332	+	0	NA	intron (NM_001164732, intron 3 of 4)	intron (NM_001164732, intron 3 of 4)	52181	NM_016622	51318	Hs.433439	NM_016622	ENSG00000132313	MRPL35	L35mt|MRP-L35	mitochondrial ribosomal protein L35	protein-coding	nan	1.036	nan	0.261	0.269	0.172	1.883	0.162	0.088	2.256	0.915	0.348	1.470	0.059	0.094	0.401	0.522	0.284	0.444	0.600	0.576	5.640	2.415	0.370	0.268	1.873	2.407	0.500	0.558	2.387	2.155	0.191	0.375	0.285	0.163	0.657	1.516	5.649	3.673	0.209	0.095	0.025	0.177	1.883	0.348	0.461	0.978	0.097	0.300
6257	chr5	51278649	51314898	+	0	NA	Intergenic	Intergenic	-617607	NR_046243	642366	Hs.544139	NR_046243		LOC642366	-	uncharacterized LOC642366	ncRNA	nan	nan	0.635	1.079	4.227	2.255	1.897	0.072	0.084	1.929	1.142	1.761	1.885	0.042	0.113	0.239	0.160	4.639	2.545	4.458	5.299	nan	1.337	0.076	0.060	0.692	0.900	0.492	0.518	nan	0.486	0.072	0.104	2.207	3.090	0.376	0.965	1.950	0.805	2.699	1.136	0.704	0.300	1.897	1.761	0.029	0.039	0.024	0.088
2590	chr14	51972164	51990566	+	0	NA	intron (NM_001042481, intron 1 of 14)	AluSz|SINE|Alu	25526	NM_001042481	122786	Hs.434914	NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding	nan	nan	1.558	0.238	0.437	0.148	0.677	0.962	0.190	0.214	0.203	0.234	1.815	0.065	0.119	0.374	0.241	0.368	0.718	0.927	0.760	0.120	0.050	0.362	0.441	1.703	2.610	0.351	0.388	0.926	0.538	0.125	0.258	1.288	1.292	0.255	0.484	nan	0.411	3.788	0.309	0.383	0.124	0.677	0.234	0.242	0.166	0.070	0.148
542	chr1	151811311	151814201	+	0	NA	5' UTR (NM_001136003, exon 1 of 2)	5' UTR (NM_001136003, exon 1 of 2)	277	NM_001136003	100191040	Hs.694717	NM_001136003	ENSG00000225556	C2CD4D	FAM148D	C2 calcium dependent domain containing 4D	protein-coding	nan	nan	1.427	2.315	4.425	2.358	0.387	0.127		2.547	1.388	5.024	2.180	0.074	0.054	7.633	9.353	5.626	9.686	6.313	nan	7.868	3.093	2.191	2.681	0.311	0.436	8.139	10.633	0.209	0.244	17.430	21.848	4.928	4.310	0.430	0.784	3.302	1.568	4.877	3.625	0.751	0.137	0.387	5.024	0.544	2.110	10.616	0.128
3750	chr18	38966902	38979504	+	0	NA	Intergenic	Intergenic	127358	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA	nan	1.074	0.736	0.290	8.143	4.179	1.171	0.047	0.013	0.186	0.239	0.172	0.603	0.034	0.101	0.569	0.273	1.137	1.283	0.995	0.942	5.590	1.671	0.072	0.118	0.702	0.989	nan	0.696	0.358	0.268	0.142	0.200	1.668	1.706	0.321	0.601	2.487	1.726	0.151	0.099	0.136	0.057	1.171	0.172	0.031	1.481	0.070	0.098
3114	chr16	30660630	30672536	+	0	NA	intron (NM_001320464, intron 8 of 11)	intron (NM_001320464, intron 8 of 11)	-4257	NM_001105079	64319	Hs.247186	NM_022452	ENSG00000156860	FBRS	FBS|FBS1	fibrosin	protein-coding	3.538	2.381	3.130	3.926	4.117	2.276	3.240	1.645	0.189	1.353	0.559	3.886	9.205	2.808	0.097	2.641	3.775	2.795	4.384	4.474	4.095	7.548	4.096	7.965	7.968	2.566	3.509	6.728	9.740	4.036	3.350	2.101	4.103	4.399	4.550	3.275	3.929	2.889	1.310	2.502	2.419	0.855	1.719	3.240	3.886	1.191	2.741	1.570	1.219
7845	chr8	102863126	102869644	+	0	NA	intron (NM_001040628, intron 4 of 7)	intron (NM_001040628, intron 4 of 7)	-62946	NM_032041	83988	Hs.492427	NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding	2.511	nan	nan	3.644	1.710	0.752	0.158	0.195	0.049	0.314	0.167	3.296	1.102	0.021	0.095	0.250	0.253	0.167	0.169	10.235	9.850	nan	0.487	0.764	0.567	0.416	nan	11.575	12.299	nan	2.035	0.184	0.314	1.326	0.814	0.144	nan	2.872	1.433	0.843	1.188	0.247	1.531	0.158	3.296	0.203	1.109	0.090	0.135
5337	chr3	20121738	20141929	+	0	NA	intron (NM_003884, intron 2 of 17)	L1MA8|LINE|L1	-47224	NR_036086	100422901		NR_036086	ENSG00000266745	MIR3135A	MIR3135|hsa-mir-3135a	microRNA 3135a	ncRNA	0.625	0.907	0.857	0.101	0.109	0.080	0.044	0.350	0.128	0.106	0.097	0.087	0.262	0.032	0.093	2.453	2.430	2.113	0.710	0.224	0.335	0.539	0.170	7.848	8.181	0.250	0.466	0.347	0.354	nan	0.309	1.255	2.226	0.106	0.095	0.291	0.755	0.562	0.438	0.082	0.071	0.019	0.048	0.044	0.087	0.012	0.141	1.251	0.139
8073	chr9	16611427	16734099	+	0	NA	intron (NM_001317940, intron 2 of 5)	intron (NM_001317940, intron 2 of 5)	198023	NM_017637	54796	Hs.656581	NM_017637	ENSG00000173068	BNC2	BSN2	basonuclin 2	protein-coding	nan	nan	0.864	0.206	0.265	0.145	0.496	0.780	0.124	0.102	0.147	0.043	0.618	2.911	0.120	0.236	0.164	0.340	0.537	0.826	0.847	0.151	0.105	0.138	0.135	4.327	4.873	0.107	0.122	0.448	0.265	1.206	1.972	1.572	1.961	0.227	0.431	0.807	0.852	0.036	0.121	0.613	0.145	0.496	0.043	0.216	0.088	1.764	0.103
4649	chr2	191501709	191522204	+	0	NA	Intergenic	Intergenic	-1665	NM_001321313	4664	Hs.107474	NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding	2.155	nan	1.765	1.233	1.322	0.713	0.924	1.227	0.149	0.657	0.456	1.817	5.424	2.007	0.122	2.599	3.076	2.768	3.075	2.911	2.548	1.545	0.603	2.818	2.655	3.152	3.887	1.952	2.855	1.222	1.289	3.866	7.738	1.687	2.026	1.146	1.277	0.988	0.633	1.685	0.619	0.458	0.446	0.924	1.817	0.266	0.890	4.718	0.372
7123	chr7	1326483	1331996	+	0	NA	Intergenic	Intergenic	56585	NM_001080461	340260	Hs.232272	NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding	3.704	0.707	10.823	0.176	0.490	0.145	0.444	0.069		0.133	0.132	0.348	nan	0.746	0.125	0.214	0.243	0.096	nan	1.218	0.753	nan	0.101	0.476	0.439	0.285	0.410	nan	0.230	1.214	0.958	0.246	0.334	0.288	0.369	0.106	0.066	0.702	0.363	0.404	0.045	0.070	0.047	0.444	0.348	3.454	0.186	0.072	0.089
170	chr1	28989356	28996831	+	0	NA	Intergenic	AluSc8|SINE|Alu	-2147	NM_024482	10691	Hs.632373	NM_006582	ENSG00000162419	GMEB1	P96PIF|PIF96	glucocorticoid modulatory element binding protein 1	protein-coding	4.171	2.545	nan	4.444	4.017	2.141	3.319	1.542	0.581	1.445	0.814	2.240	5.701	3.329	0.180	3.258	3.887	3.389	5.207	7.783	7.849	3.762	1.801	7.425	7.667	6.756	7.784	3.820	5.497	5.643	5.211	2.407	4.040	1.861	2.111	3.842	7.114	2.539	1.331	3.803	2.564	0.448	1.403	3.319	2.240	0.919	1.545	1.313	2.433
4873	chr20	19989356	20000574	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2969	NM_181528	51126	Hs.368783	NM_016100	ENSG00000173418	NAA20	NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	2.201	nan	2.740	1.648	1.697	0.902	1.117	0.904	0.271	1.582	0.796	2.592	2.366	0.435	0.053	1.758	1.863	0.776	1.719	2.117	2.461	7.153	2.547	2.476	2.604	2.438	3.573	3.858	3.362	2.250	2.069	0.892	1.690	2.414	4.024	1.245	1.643	2.173	1.270	0.308	2.712	0.669	0.156	1.117	2.592	0.915	2.213	0.274	0.383
5745	chr3	183520632	183545626	+	0	NA	TTS (NM_024871)	TTS (NM_024871)	10264	NM_024871	79929	Hs.478465	NM_024871	ENSG00000180834	MAP6D1	MAPO6D1|SL21	MAP6 domain containing 1	protein-coding	1.413	1.060	1.712	1.712	0.573	0.379	0.813	0.173	0.232	1.191	0.774	0.499	3.220	0.146	0.067	0.541	0.657	0.559	0.816	3.734	3.235	7.369	3.168	0.565	0.568	1.014	1.633	2.541	2.983	2.909	3.385	0.274	0.501	0.693	1.154	0.529	0.836	2.610	1.389	1.929	1.230	0.195	0.572	0.813	0.499	0.596	0.578	0.083	0.366
26	chr1	1812007	1824783	+	0	NA	intron (NM_002074, intron 1 of 11)	AluY|SINE|Alu	4161	NM_001282538	2782	Hs.430425	NM_002074	ENSG00000078369	GNB1	MRD42	G protein subunit beta 1	protein-coding	3.188	nan	2.429	2.344	2.459	1.329	1.057	1.467	0.241	1.182	0.794	1.308	4.062	2.960	0.176	1.911	2.366	2.358	3.083	4.411	4.081	1.850	0.774	6.410	5.757	2.130	nan	nan	9.111	nan	2.038	1.472	2.897	0.937	0.939	2.359	2.929	1.556	0.691	1.586	2.241	0.216	0.769	1.057	1.308	0.784	1.544	0.799	1.121
6513	chr5	151297450	151316055	+	0	NA	Intergenic	Intergenic	-2355	NM_000171	2741	Hs.121490	NM_000171	ENSG00000145888	GLRA1	HKPX1|STHE	glycine receptor alpha 1	protein-coding	0.604	nan	0.451	0.066	0.287	0.138	0.209	0.089	0.069	0.047	0.080	0.161	0.784	0.023	0.105	0.147	0.079	0.065	0.103	0.327	0.324	0.400	0.143	0.039	0.056	0.167	0.248	0.227	0.221	0.709	0.654	0.183	0.240	0.194	0.250	1.427	5.204	0.196	0.271	0.307	0.362	0.092	0.791	0.209	0.161	0.036	0.229	0.053	0.268
2116	chr12	104522864	104533097	+	0	NA	intron (NM_006166, intron 2 of 7)	intron (NM_006166, intron 2 of 7)	4060	NM_006166	4801	Hs.84928	NM_006166	ENSG00000120837	NFYB	CBF-A|CBF-B|HAP3|NF-YB	nuclear transcription factor Y subunit beta	protein-coding	2.634	2.168	nan	2.836	3.366	1.639	2.400	1.541	0.315	1.210	0.781	3.497	3.399	1.708	0.173	2.601	2.304	3.080	4.523	4.755	4.508	5.261	1.949	4.278	4.065	2.534	3.513	3.137	4.855	3.694	3.832	1.123	2.788	2.497	1.926	3.816	3.220	4.957	2.053	1.688	1.990	0.521	0.846	2.400	3.497	0.389	1.220	0.741	0.976
7299	chr7	57883564	57887781	+	0	NA	Intergenic	Intergenic	375789	NM_001159279	441234	Hs.533121	NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding	nan	1.212	1.611	0.083	0.459	0.105	0.144	0.161	0.038	0.113	0.140	0.142	0.491	0.091	0.278	2.326	5.209	11.652	2.252	0.366	0.493	0.260	0.160	0.541	0.665	0.376	0.801	0.132	0.221	0.753	0.360	0.623	1.109	0.080	0.119	0.220	0.429	0.397	0.363	0.027	0.042	0.091	0.113	0.144	0.142	0.045	0.024	0.175	0.118
2250	chr13	27358323	27371122	+	0	NA	Intergenic	Intergenic	-29800	NM_005288	2835	Hs.123034	NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding	0.662	0.935	1.159	1.060	0.368	0.287	0.100	0.111	0.039	0.148	0.103	0.423	1.031	0.017	0.059	6.561	6.939	1.105	nan	0.583	0.542	4.604	1.302	0.092	0.082	0.960	1.428	0.285	0.276	0.636	0.363	4.967	5.267	0.047	0.075	0.201	0.360	0.591	0.497	0.039	0.049	0.023	0.666	0.100	0.423	0.137	0.032	2.942	0.059
526	chr1	150252938	150267528	+	0	NA	TTS (NM_001300838)	TTS (NM_001300838)	5101	NM_001300841	148523	Hs.54680	NM_144697	ENSG00000159208	CIART	C1orf51|CHRONO|GM129	circadian associated repressor of transcription	protein-coding	nan	nan	2.739	2.208	1.547	0.790	1.370	1.665	0.264	1.365	0.637	1.488	5.439	0.834	0.138	3.657	3.277	4.568	4.253	4.230	nan	4.238	2.196	6.897	7.439	2.711	3.459	4.016	7.065	1.900	1.690	4.520	5.437	2.259	2.754	2.670	2.939	2.533	1.649	1.008	3.365	0.261	0.539	1.370	1.488	0.406	1.984	2.646	0.738
8298	chr9	132217034	132234213	+	0	NA	Intergenic	MIRb|SINE|MIR	-25316	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	-	long intergenic non-protein coding RNA 963	ncRNA	nan	2.010	3.154	2.347	2.488	1.270	3.242	0.787	0.309	0.894	0.487	3.254	2.324	1.085	0.087	1.475	2.308	0.959	2.263	3.972	4.003	nan	0.073	0.367	0.340	1.239	1.684	4.657	6.263	4.212	4.484	0.952	1.362	2.455	1.970	1.643	2.714	1.184	0.870	3.041	1.191	0.917	0.737	3.242	3.254	1.444	3.941	1.094	0.917
3500	chr17	61914761	61928952	+	0	NA	Intergenic	Intergenic	-1505	NM_001098426	6603	Hs.250581	NM_003077	ENSG00000108604	SMARCD2	BAF60B|CRACD2|PRO2451|Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	2.731	nan	4.520	2.300	4.620	2.265	0.777	0.811	0.224	1.945	0.974	2.871	3.571	1.482	0.123	3.995	5.369	1.302	2.034	3.110	3.016	3.238	1.130	8.435	9.047	1.324	nan	4.963	5.471	3.309	3.344	0.825	2.236	1.897	1.953	1.945	3.903	1.538	0.837	0.791	1.411	0.506	1.284	0.777	2.871	0.478	0.754	0.627	1.065
6218	chr5	30185334	30198603	+	0	NA	Intergenic	Intergenic	311301	NR_134264	105374704	Hs.151157	NR_134264		LOC105374704	-	uncharacterized LOC105374704	ncRNA	0.590	1.078	nan	1.662	0.169	0.177	0.157	0.225	0.109	2.222	0.791	0.153	0.496	0.016	0.090	0.351	0.222	0.076	0.172	0.206	0.298	3.942	3.578	0.123	0.096	0.259	0.333	3.165	2.903	0.816	0.321	0.108	0.170	1.899	4.639	0.308	0.888	1.414	0.852	0.008	0.027	0.337		0.157	0.153	0.015	2.364	0.030	0.112
8251	chr9	117209036	117236345	+	0	NA	intron (NM_015404, intron 3 of 11)	MIRb|SINE|MIR	-34242	NM_001346890	25861	Hs.93836	NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding	0.700	1.083	nan	0.786	0.421	0.188	0.750	0.124	0.089	0.328	0.308	0.472	1.450	0.061	0.078	0.252	0.257	0.229	0.305	1.322	1.388	0.649	0.222	0.444	0.477	0.251	0.404	1.488	nan	0.667	0.558	0.177	0.275	0.486	0.511	0.246	0.315	nan	1.329	4.151	0.250	0.084	0.077	0.750	0.472	0.319	1.050	0.087	0.081
6568	chr5	177364927	177386683	+	0	NA	Intergenic	MIR|SINE|MIR	47438	NM_006261	5626	Hs.158301	NM_006261	ENSG00000175325	PROP1	CPHD2|PROP-1	PROP paired-like homeobox 1	protein-coding	0.994	1.478	0.948	0.150	0.359	0.198	0.737	0.070	0.097	0.216	0.193	1.776	2.372	0.141	0.139	0.543	0.950	0.638	nan	1.320	1.234	1.164	0.336	0.536	0.534	1.456	nan	1.756	1.575	0.393	0.253	0.428	0.607	0.446	0.349	0.183	0.335	0.656	0.416	2.664	4.297	0.119	0.075	0.737	1.776	0.405	0.177	0.173	0.079
232	chr1	39489580	39498907	+	0	NA	intron (NM_004552, intron 1 of 2)	intron (NM_004552, intron 1 of 2)	2276	NM_001184979	4725	Hs.632385	NM_004552	ENSG00000168653	NDUFS5	CI-15k|CI15K	NADH:ubiquinone oxidoreductase subunit S5	protein-coding	14.234	nan	1.691	4.775	1.286	0.982	1.430	1.207	0.378	0.704	0.658	2.976	3.222	1.326	0.160	1.191	1.354	2.904	4.084	4.156	3.073	nan	1.166	4.439	4.845	2.081	2.928	12.888	13.639	nan	3.384	1.747	2.783	1.462	1.344	3.325	3.295	35.781	25.148	0.478	1.157	0.165	0.931	1.430	2.976	0.377	0.760	0.987	0.928
6997	chr6	138404905	138414650	+	0	NA	3' UTR (NM_022121, exon 3 of 3)	3' UTR (NM_022121, exon 3 of 3)	18883	NM_022121	64065	Hs.201446	NM_022121	ENSG00000112378	PERP	KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1	PERP, TP53 apoptosis effector	protein-coding	0.989	2.611	1.064	2.850	2.843	1.318	4.116	0.038	0.016	0.436	0.314	0.373	11.814	0.038	0.122	0.383	0.217	1.288	4.248	1.000	1.041	nan	2.233	0.343	0.366	0.080	0.212	1.785	2.812	0.585	0.280	0.187	0.402	5.497	9.294	0.374	nan	1.184	0.601	0.851	0.801	1.642	0.096	4.116	0.373	0.060	1.372	0.111	0.269
6207	chr5	22207923	22218084	+	0	NA	promoter-TSS (NM_001317227)	promoter-TSS (NM_001317227)	-125	NM_001317227	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding	0.774	2.240	1.158	0.252	0.227	0.142	0.162	0.184	0.112	0.842	0.722	0.248	0.631	0.054	0.114	0.498	0.327	0.354	0.402	0.541	0.575	0.971	0.453	0.181	0.151	nan	6.698	0.551	0.535	1.601	0.910	0.205	0.345	5.889	4.838	0.294	0.438	nan	1.047	0.033	0.422	2.045	0.084	0.162	0.248	0.144	0.553	0.136	0.196
3458	chr17	49335818	49339615	+	0	NA	promoter-TSS (NM_017643)	promoter-TSS (NM_017643)	-181	NM_016001	51096	Hs.709327	NM_016001	ENSG00000011260	UTP18	CGI-48|WDR50	UTP18, small subunit processome component	protein-coding	5.861	3.421	nan	6.884	8.195	4.681	3.228	4.019	0.210	3.626	1.122	4.847	11.095	5.455	0.117	9.587	9.040	7.438	10.719	10.196	nan	9.202	5.102	18.119	19.838	3.941	4.757	11.153	14.954	12.072	14.298	7.505	11.393	7.587	8.768	9.196	7.315	3.827	1.772	3.680	5.493	1.731	3.409	3.228	4.847	1.969	2.277	3.483	2.221
3054	chr16	12638905	12657135	+	0	NA	intron (NM_032167, intron 20 of 20)	intron (NM_032167, intron 20 of 20)	-166158	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA	0.945	0.624	nan	0.166	0.420	0.220	0.358	0.074	0.070	0.086	0.056	0.246	3.186	0.065	0.042	0.416	0.393	0.119	0.129	0.427	0.492	4.558	1.268	0.391	0.378	0.561	0.973	1.334	1.669	nan	0.616	0.362	0.366	0.216	0.382	0.486	0.993	0.974	0.743	1.255	0.571	0.042	0.082	0.358	0.246	0.363	0.117	0.086	0.311
6008	chr4	118301348	118310971	+	0	NA	Intergenic	Intergenic	-43395	NR_125757	103689918	Hs.582062	NR_125757		LINC01378	-	long intergenic non-protein coding RNA 1378	ncRNA	0.528	0.770	0.439	0.168	0.114	0.100	0.067	0.073	0.100	0.075	0.061	0.037	0.147	0.023	0.067	0.196	0.139	0.120	0.205	0.142	0.161	0.046	0.054	0.131	0.098	5.048	5.294	0.200	0.230	0.561	0.423	0.141	0.105	0.048	0.048	0.205	0.336	0.122	0.171	0.023	0.018			0.067	0.037			0.037	0.013
1182	chr10	97204425	97217810	+	0	NA	intron (NM_015385, intron 2 of 24)	intron (NM_015385, intron 2 of 24)	-10180	NM_001290296	10580	Hs.38621	NM_006434	ENSG00000095637	SORBS1	CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1	sorbin and SH3 domain containing 1	protein-coding	0.710	0.763	0.682	0.117	0.294	0.123	0.028	0.085	0.107	0.059	0.037	0.091	0.279	0.040	0.078	0.478	0.438	2.875	6.985	0.227	0.299	0.575	0.210	0.157	0.141	0.218	0.438	nan	0.589	0.214	0.133	0.166	0.267	0.108	0.167	0.245	0.530	0.498	0.384	0.033	0.113	0.007	0.113	0.028	0.091	0.065	0.045	0.015	0.167
7963	chr8	140882901	140895329	+	0	NA	intron (NM_031466, intron 21 of 22)	intron (NM_031466, intron 21 of 22)	-173816	NM_001282534	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding	1.758	1.025	nan	0.755	0.437	0.271	0.289	0.079	0.110	0.101	0.041	0.835	2.838	0.017	0.065	0.278	0.307	0.153	0.238	nan	1.241	nan	0.556	0.381	0.372	0.569	0.850	2.344	1.912	0.331	0.358	0.276	0.431	0.131	0.156	0.188	0.259	0.759	0.649	6.322	1.136	0.031	0.071	0.289	0.835	0.172	4.530	0.048	0.100
6744	chr6	37068564	37113486	+	0	NA	Intergenic	LTR33|LTR|ERVL	-46897	NM_002648	5292	Hs.81170	NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding	nan	1.195	nan	1.219	0.843	0.382	1.632	1.959	0.471	0.402	0.277	1.539	1.480	6.192	0.278	1.055	1.522	0.641	nan	nan	1.240	2.071	1.113	0.996	1.080	1.337	1.843	2.712	4.513	2.098	2.161	0.434	0.682	0.699	0.744	1.173	3.333	1.124	0.796	0.759	1.027	0.118	0.960	1.632	1.539	0.547	0.224	0.417	0.724
1447	chr11	62224114	62233630	+	0	NA	intron (NM_024060, intron 5 of 5)	AluSc|SINE|Alu	42365	NM_003357	7356	Hs.523732	NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding	nan	0.694	0.472	0.202	0.380	0.188	0.363	0.149	0.186	0.040	0.078	0.178	0.444	0.124	0.151	0.699	0.655	0.410	0.535	0.423	0.610	1.746	0.465	5.249	5.490	0.402	0.623	0.635	0.762	0.400	0.113	5.052	5.575	0.203	0.393	0.233	0.416	0.539	0.442	0.180	0.279	0.060	0.246	0.363	0.178	0.089	0.033	8.168	0.050
207	chr1	36598606	36627828	+	0	NA	intron (NM_001270895, intron 1 of 4)	AluJb|SINE|Alu	1898	NR_073098	27095	Hs.523131	NM_014408	ENSG00000054116	TRAPPC3	BET3	trafficking protein particle complex 3	protein-coding	3.306	nan	2.427	2.741	1.765	0.878	1.984	2.269	0.314	1.539	0.732	3.513	3.497	2.555	0.121	1.441	1.851	1.876	3.041	3.694	3.527	nan	0.865	2.919	2.947	3.236	4.834	4.796	7.722	nan	3.171	1.959	3.150	1.189	1.171	1.510	2.137	2.174	nan	2.001	1.536	0.297	0.771	1.984	3.513	0.783	1.018	1.066	0.699
7595	chr8	11317913	11332932	+	0	NA	Intergenic	Intergenic	-1146	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	family with sequence similarity 167 member A	protein-coding	2.036	1.071	nan	0.511	0.849	0.352	0.866	0.106	0.075	0.187	0.219	2.525	2.933	0.635	0.125	0.855	1.272	0.581	1.069	1.864	nan	1.246	0.273	1.596	1.720	1.146	1.739	1.649	1.739	0.527	0.482	0.647	0.965	0.228	0.170	0.413	0.843	3.667	1.708	2.534	2.563	0.089	0.021	0.866	2.525	0.408	3.842	0.813	0.173
1510	chr11	72336448	72393481	+	0	NA	intron (NM_002599, intron 1 of 30)	MIR3|SINE|MIR	-11460	NM_001143839	5138	Hs.503163	NM_002599	ENSG00000186642	PDE2A	CGS-PDE|PDE2A1|PED2A4|cGSPDE	phosphodiesterase 2A	protein-coding	nan	0.572	0.663	0.255	0.513	0.250	0.479	0.080	0.053	0.127	0.069	0.141	0.679	0.089	0.077	2.829	5.250	0.344	0.325	1.064	1.059	0.873	0.331	1.379	1.505	0.966	1.533	1.085	1.178	1.250	1.299	1.105	1.320	0.508	0.652	0.518	1.244	0.464	0.439	1.459	1.106	0.100	0.541	0.479	0.141	0.481	0.183	0.439	0.269
48	chr1	6660198	6676134	+	0	NA	Intergenic	Intergenic	-5208	NM_014851	9903	Hs.7764	NM_014851	ENSG00000162413	KLHL21	-	kelch like family member 21	protein-coding	2.683	nan	3.236	4.779	1.468	0.804	0.835	2.928	0.545	0.866	0.463	1.150	3.662	4.040	0.183	1.797	2.468	3.922	6.383	3.643	3.248	1.692	0.465	3.881	3.895	1.840	nan	nan	5.444	nan	2.081	2.010	3.260	0.741	0.760	1.889	2.230	1.342	0.939	1.142	1.762	0.126	0.602	0.835	1.150	0.703	1.495	1.390	0.675
3641	chr18	3278301	3286444	+	0	NA	Intergenic	AluSx1|SINE|Alu	19655	NM_001144945	103910	Hs.190086	NM_033546	ENSG00000118680	MYL12B	MLC-B|MRLC2	myosin light chain 12B	protein-coding	1.034	1.057	1.954	0.182	0.409	0.098	0.219	0.296	0.100	0.154	0.112	0.632	nan	8.969	0.277	0.546	0.811	0.572	1.338	0.915	1.144	nan	0.273	0.540	0.551	0.510	nan	1.943	1.828	nan	0.342	0.787	1.428	0.260	0.505	0.342	nan	nan	0.923	0.252	0.137	0.058	0.038	0.219	0.632	0.060	0.485	0.780	0.135
3585	chr17	76709154	76721659	+	0	NA	intron (NM_004762, intron 1 of 12)	intron (NM_004762, intron 1 of 12)	-2292	NM_001292019	9267	Hs.191215	NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding	2.826	1.302	1.460	1.292	0.672	0.358	1.329	0.297	0.180	0.522	0.333	1.273	1.517	0.104	0.121	6.787	6.906	1.298	1.724	1.958	2.089	2.386	0.656	0.711	0.764	nan	4.240	2.850	3.477	6.151	5.682	3.323	5.036	0.770	0.948	1.309	1.881	nan	1.229	0.226	2.087	0.121	0.314	1.329	1.273	0.591	0.599	4.016	1.122
1988	chr12	62994900	62999598	+	0	NA	promoter-TSS (NR_121682)	promoter-TSS (NR_121682)	-35	NR_121682	283416	Hs.375881	NM_175895	ENSG00000221949	LINC01465	C12orf61	long intergenic non-protein coding RNA 1465	ncRNA	8.753	5.221	5.084	7.720	7.327	3.926	8.775	6.413	0.514	4.190	2.957	9.503	18.705	4.668	0.223	10.527	9.262	11.912	15.359	12.838	nan	11.733	8.371	22.629	23.950	7.782	8.202	15.908	21.503	11.851	13.464	8.629	10.716	11.464	12.155	11.109	8.853	6.592	3.776	4.567	8.298	2.041	4.479	8.775	9.503	1.727	5.298	2.927	3.691
4128	chr19	49312656	49324347	+	0	NA	intron (NM_016246, intron 5 of 8)	intron (NM_016246, intron 5 of 8)	-4181	NM_001164773	587	Hs.512670	NM_001190	ENSG00000105552	BCAT2	BCAM|BCATM|BCT2|PP18	branched chain amino acid transaminase 2	protein-coding	2.720	1.890	1.514	2.577	3.606	1.837	1.394	1.452	0.398	1.663	1.402	4.190	2.775	1.076	0.143	0.991	1.181	1.175	1.528	3.097	3.642	5.905	1.520	2.881	3.298	1.396	2.013	7.562	7.274	2.818	2.915	0.715	1.321	2.492	2.253	1.537	3.587	3.106	1.508	2.069	6.649	0.449	0.837	1.394	4.190	0.721	0.770	0.439	0.690
5981	chr4	105408024	105423372	+	0	NA	non-coding (NR_132741, exon 2 of 3)	non-coding (NR_132741, exon 2 of 3)	360	NR_132741	80319	Hs.12248	NM_025212	ENSG00000168772	CXXC4	IDAX	CXXC finger protein 4	protein-coding	1.520	nan	nan	2.795	4.342	2.193	2.093	0.146	0.052	1.410	1.005	3.193	6.109	3.808	0.120	0.546	0.591	0.760	nan	3.811	3.584	1.564	0.608	0.514	0.595	1.815	nan	2.703	3.557	2.814	2.772	0.322	0.771	3.821	2.761	2.331	nan	1.531	0.694	0.007	1.379	0.867	2.302	2.093	3.193	0.190	0.613	0.393	1.177
4376	chr2	58266226	58285487	+	0	NA	intron (NM_006296, intron 1 of 12)	intron (NM_006296, intron 1 of 12)	2009	NM_001130481	7444	Hs.715298	NM_006296	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding	1.444	nan	1.893	0.576	1.013	0.433	0.768	0.697	0.091	1.041	0.905	1.173	0.380	0.591	0.157	1.007	1.051	2.833	3.304	1.403	1.423	3.772	1.455	2.244	2.251	4.819	6.012	2.092	2.600	0.724	0.385	0.596	1.156	1.088	1.051	0.575	0.685	1.326	0.753	0.585	0.162	0.280	0.562	0.768	1.173	0.020	0.912	0.530	0.316
4243	chr2	19808789	19818678	+	0	NA	Intergenic	L1MDa|LINE|L1	-254882	NR_033875	400946	Hs.289062	NR_033875	ENSG00000228784	LINC00954	-	long intergenic non-protein coding RNA 954	ncRNA	0.719	0.537	1.028	0.544	0.221	0.113	0.494	0.272	0.166	0.142	0.192	0.085	0.936	0.045	0.112	0.404	0.186	0.177	0.270	0.322	0.262	9.126	3.326	0.238	0.237	0.131	0.228	2.161	nan	1.290	1.219	0.080	0.210	0.136	0.086	0.393	nan	0.581	0.477	0.051	0.108	0.019	0.064	0.494	0.085	0.089	0.031	0.010	0.086
2763	chr14	100695117	100714264	+	0	NA	promoter-TSS (NM_003403)	promoter-TSS (NM_003403)	-412	NM_003403	7528	Hs.388927	NM_003403	ENSG00000100811	YY1	DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1	YY1 transcription factor	protein-coding	3.662	1.736	2.010	2.465	2.011	1.184	2.084	1.575	0.317	1.252	0.568	2.287	3.279	1.671	0.135	1.757	2.035	2.495	3.546	4.247	4.246	1.783	0.966	2.825	2.923	1.627	2.307	2.536	3.954	3.908	4.121	2.653	4.494	1.885	2.375	1.964	1.926	1.100	0.707	1.944	2.060	0.558	1.788	2.084	2.287	0.325	0.628	2.486	0.575
1141	chr10	73378160	73422064	+	0	NA	intron (NM_052836, intron 11 of 12)	intron (NM_052836, intron 11 of 12)	79466	NM_001164375	414152	Hs.568788	NM_001164375	ENSG00000214688	C10orf105	-	chromosome 10 open reading frame 105	protein-coding	0.702	nan	0.729	0.026	0.277	0.157	0.117	0.078	0.055	0.107	0.068	0.063	0.235	0.044	0.059	2.828	3.479	0.983	0.705	0.354	0.403	0.669	0.217	2.032	2.183	0.172	0.376	0.386	nan	0.408	0.356	2.345	3.560	0.124	0.192	0.472	nan	0.362	0.341	0.073	0.087	0.017	0.073	0.117	0.063	0.196	0.016	3.428	0.456
984	chr10	405373	421721	+	0	NA	intron (NM_014974, intron 18 of 36)	L1MC|LINE|L1	-85521	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA	0.612	0.719	0.919	2.030	0.794	0.421	0.779	0.275	0.148	0.153	0.106	1.818	4.511	0.073	0.055	0.433	0.486	1.351	2.735	1.512	1.691	4.750	1.451	0.188	0.129	0.437	0.638	0.816	1.254	0.168	0.201	0.209	0.386	1.667	1.555	0.202	0.274	0.192	0.152	0.752	1.637	0.525	1.130	0.779	1.818	0.150	0.186	0.164	0.127
8011	chr9	1791878	1799111	+	0	NA	Intergenic	Intergenic	-219725	NM_001289397	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.882	1.669	0.735	0.073	0.349	0.111	0.316	0.124	0.068	0.088	0.080	0.116	0.273	0.015	0.109	2.120	1.135	10.846	0.914	0.268	0.538	0.186	0.091	6.178	6.101	2.694	3.826	0.154	0.176	3.712	3.327	0.264	1.594	0.067	0.056	0.043	nan	0.705	0.895	0.036	3.595			0.316	0.116	0.174	0.028	0.408	0.018
1155	chr10	79393707	79410343	+	0	NA	Intergenic	L1MA8|LINE|L1	-4448	NM_001271522	3778	Hs.144795	NM_002247	ENSG00000156113	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding	0.983	nan	0.854	1.810	0.889	0.357	0.592	0.068	0.049	0.366	0.152	1.194	8.682	0.006	0.051	0.330	0.449	0.138	0.218	1.566	1.459	3.702	0.933	0.141	0.173	0.376	0.542	2.647	nan	0.606	0.445	0.787	1.329	0.885	0.929	0.361	nan	1.033	0.570	0.284	1.126	0.310	0.862	0.592	1.194	0.156	0.055	0.495	0.216
788	chr1	203140759	203157030	+	0	NA	exon (NM_001276, exon 9 of 10)	exon (NM_001276, exon 9 of 10)	-3952	NM_004997	4608	Hs.927	NM_004997	ENSG00000133055	MYBPH	-	myosin binding protein H	protein-coding	1.524	1.017	1.448	0.152	1.952	0.874	0.269	0.121	0.110	0.463	0.156	2.777	0.554	0.053	0.076	0.648	0.872	0.506	0.704	1.563	2.346	1.449	0.408	nan	nan	0.353	0.612	0.743	0.728	0.524	0.304	0.214	0.282	0.134	0.199	1.574	5.327	1.069	0.623	0.232	0.324	0.024	0.419	0.269	2.777	0.142	0.354	0.012	0.676
4797	chr20	303791	311334	+	0	NA	3' UTR (NM_006943, exon 1 of 1)	3' UTR (NM_006943, exon 1 of 1)	1347	NM_006943	6666	Hs.43627	NM_006943	ENSG00000177732	SOX12	SOX22	SRY-box 12	protein-coding	5.514	4.555	3.596	5.243	3.746	1.923	3.922	1.201	0.170	1.616	0.842	3.267	11.850	4.080	0.107	5.540	7.193	2.500	3.568	4.747	3.087	7.529	2.262	8.770	9.319	3.464	5.047	7.749	9.968	7.963	10.450	2.264	5.156	4.953	3.032	6.625	7.121	1.640	0.660	2.921	7.624	1.247	2.128	3.922	3.267	1.642	4.545	3.121	3.018
7530	chr7	148523941	148558127	+	0	NA	intron (NM_001203248, intron 3 of 19)	intron (NM_001203248, intron 3 of 19)	39567	NM_001203249	2146	Hs.444082	NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	1.161	0.737	0.956	0.167	0.384	0.220	0.128	0.221	0.103	0.302	0.234	0.260	0.348	0.200	0.171	0.660	0.581	0.735	0.766	0.487	0.606	0.410	0.209	1.649	1.612	0.752	0.889	0.466	0.418	0.958	0.450	0.496	0.863	0.176	0.247	1.149	3.303	0.685	nan	0.088	0.140	0.044	0.146	0.128	0.260	0.060	0.065	0.331	0.752
5238	chr22	29911464	29917241	+	0	NA	intron (NM_003678, intron 15 of 19)	intron (NM_003678, intron 15 of 19)	35292	NM_001002878	8563	Hs.75361	NM_003678	ENSG00000100296	THOC5	C22orf19|Fmip|PK1.3|fSAP79	THO complex 5	protein-coding	nan	0.555	0.709	0.118	0.303	0.279	0.131	0.143	0.028	0.135	0.117	0.145	0.590	0.075	0.088	1.646	2.583	7.852	6.701	0.369	0.407	0.346	0.116	0.828	0.890	0.498	nan	0.202	0.412	0.342	0.210	1.400	1.967	0.158	0.219	0.194	nan	0.766	0.476	0.068	0.122		0.111	0.131	0.145	0.033	0.035	1.077	0.088
6630	chr6	16710447	16771159	+	0	NA	intron (NM_001128164, intron 2 of 7)	intron (NM_001128164, intron 2 of 7)	-20566	NR_136240	101928433	Hs.408455	NR_136240		LOC101928433	-	uncharacterized LOC101928433	ncRNA	1.297	nan	0.689	0.086	0.586	0.293	1.442	2.401	0.270	0.239	0.144	0.552	0.541	0.054	0.096	0.508	0.608	1.898	3.837	0.734	0.626	0.946	0.328	1.087	1.099	2.369	3.193	0.160	0.177	0.517	0.403	0.585	1.004	2.073	3.075	0.579	0.992	0.733	0.540	0.017	0.198	0.464	0.252	1.442	0.552	0.014	0.023	0.589	0.224
6335	chr5	73830791	73948683	+	0	NA	Intergenic	Intergenic	-46111	NM_001292004	3074	Hs.69293	NM_000521	ENSG00000049860	HEXB	ENC-1AS|HEL-248|HEL-S-111	hexosaminidase subunit beta	protein-coding	1.002	nan	1.240	0.212	0.507	0.275	0.449	0.485	0.116	0.148	0.101	0.224	0.696	8.947	0.278	0.426	0.440	2.213	3.918	0.670	0.567	nan	0.233	0.205	0.205	1.081	nan	0.595	0.596	0.804	0.743	0.162	0.382	0.674	0.731	0.688	1.698	0.603	0.432	0.388	0.296	0.213	0.136	0.449	0.224	0.079	0.160	0.074	0.429
4115	chr19	48144373	48159343	+	0	NA	intron (NM_015711, intron 1 of 14)	AluSq10|SINE|Alu	40405	NM_015711	29998	Hs.97244	NM_015711	ENSG00000063169	GLTSCR1	-	glioma tumor suppressor candidate region gene 1	protein-coding	0.902	1.796	1.725	0.871	0.954	0.575	0.408	0.111	0.043	0.300	0.212	0.433	1.286	0.196	0.127	0.385	0.391	0.398	1.000	0.696	0.658	4.937	1.807	0.637	0.695	0.587	0.931	1.583	2.601	1.301	1.432	0.379	0.660	0.788	1.085	0.392	0.880	1.754	0.842	0.385	0.699	0.165	0.064	0.408	0.433	0.104	0.401	0.450	0.172
1313	chr11	12397673	12413892	+	0	NA	intron (NM_018222, intron 1 of 12)	intron (NM_018222, intron 1 of 12)	6756	NM_018222	55742	Hs.432914	NM_018222	ENSG00000197702	PARVA	CH-ILKBP|MXRA2	parvin alpha	protein-coding	1.398	nan	0.852	0.458	0.465	0.266	0.456	1.076	0.111	0.251	0.223	4.166	0.732	0.412	0.081	nan	1.072	1.361	2.044	1.412	1.487	1.854	0.632	2.538	2.369	0.543	nan	1.098	1.516	0.867	0.857	0.745	1.080	1.059	0.873	0.439	0.660	1.862	nan	0.410	0.300	0.316	0.215	0.456	4.166	0.163	0.006	0.220	0.107
7891	chr8	117882194	117888136	+	0	NA	intron (NM_006265, intron 1 of 13)	MIRb|SINE|MIR	-1498	NR_033886	644660	Hs.706174	NR_033886	ENSG00000253327	RAD21-AS1	C8orf81|NCRNA00255	RAD21 antisense RNA 1	ncRNA	5.593	nan	4.062	6.723	4.821	2.698	2.542	2.381	0.309	1.165	0.616	5.838	11.667	1.908	0.158	2.939	3.010	4.363	4.431	8.980	8.804	nan	3.142	19.315	20.257	2.902	nan	3.225	4.988	7.050	5.913	2.458	5.134	3.456	4.108	5.808	6.008	2.084	0.848	3.970	2.842	1.400	2.565	2.542	5.838	0.553	2.439	2.181	2.494
1617	chr11	107727807	107731253	+	0	NA	5' UTR (NM_017515, exon 1 of 8)	5' UTR (NM_017515, exon 1 of 8)	384	NM_017515	54733	Hs.524014	NM_017515	ENSG00000110660	SLC35F2	HSNOV1	solute carrier family 35 member F2	protein-coding	2.230	2.019	3.081	2.705	1.650	1.007	1.833	0.436	0.095	1.880	1.427	0.858	8.069	5.640	0.296	15.588	20.180	2.228	3.681	6.742	4.151	7.707	1.424	5.256	5.446	3.561	5.414	6.242	8.128	6.476	7.619	4.686	9.681	5.871	3.564	2.746	3.911	2.807	1.418	1.347	2.964	0.939	1.747	1.833	0.858	1.850	1.762	7.504	1.259
6048	chr4	154003204	154013620	+	0	NA	Intergenic	L2c|LINE|L2	-65858	NM_001130067	23321	Hs.435711	NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding	nan	0.829	2.607	0.245	0.324	0.279	0.110	0.144	0.031	0.164	0.142	0.139	0.478	0.052	0.070	3.386	2.247	12.222	3.342	0.456	0.569	0.505	0.135	4.042	4.519	0.271	0.514	0.607	0.778	0.689	0.451	2.026	3.086	0.281	0.276	0.274	0.354	0.584	0.466	0.191	0.077	0.036	0.100	0.110	0.139	0.093	0.098	0.864	0.082
3521	chr17	70598374	70631855	+	0	NA	intron (NR_033876, intron 2 of 4)	L1ME3F|LINE|L1	21497	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	LCAL5|onco-lncRNA-12	long intergenic non-protein coding RNA 511	ncRNA	0.952	0.912	0.723	0.499	0.833	0.392	1.626	0.079	0.093	0.336	0.184	0.560	2.664	0.068	0.095	2.450	2.858	2.661	6.967	0.527	0.600	1.064	0.408	2.665	2.773	nan	0.467	1.962	1.806	0.507	0.349	0.786	1.434	0.446	0.529	0.180	0.279	nan	0.664	0.323	1.043	0.073	0.068	1.626	0.560	0.214	0.740	0.682	0.040
490	chr1	144922222	144942812	+	0	NA	promoter-TSS (NM_001002811)	promoter-TSS (NM_001002811)	-152	NM_001002811	9659	Hs.584841	NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding	2.907	nan	3.165	1.923	2.015	1.044	1.611	4.187	0.367	1.953	1.412	1.459	15.413	1.200	0.258	1.702	1.966	1.894	4.426	4.878	4.937	5.946	1.746	2.735	2.855	3.263	3.937	3.950	4.754	1.241	0.943	2.631	4.861	2.213	3.114	1.207	2.433	3.462	1.783	2.648	3.485	0.799	0.998	1.611	1.459	0.116	1.763	2.510	0.341
1843	chr12	13246209	13256969	+	0	NA	intron (NM_001206842, intron 1 of 5)	intron (NM_001206842, intron 1 of 5)	-2849	NM_001206845	83445	Hs.240053	NM_031289	ENSG00000111305	GSG1	-	germ cell associated 1	protein-coding	2.992	2.621	1.980	3.692	0.500	0.238	3.954	1.517	0.074	0.683	0.363	0.487	6.679	1.787	0.099	0.621	1.152	1.703	3.146	nan	3.316	0.678	0.337	2.322	2.352	1.687	2.432	1.150	2.352	2.028	2.503	0.553	1.033	1.805	1.990	4.010	5.921	0.791	0.697	5.269	1.698	0.355	0.383	3.954	0.487	0.596	0.265	0.533	2.193
1112	chr10	43890568	43906484	+	0	NA	intron (NM_001098204, intron 1 of 3)	AluJo|SINE|Alu	4773	NM_001098206	3185	Hs.808	NM_004966	ENSG00000169813	HNRNPF	HNRPF|OK/SW-cl.23|mcs94-1	heterogeneous nuclear ribonucleoprotein F	protein-coding	4.308	nan	4.854	5.620	6.774	3.652	2.852	2.450	0.386	1.797	0.857	4.364	7.536	3.382	0.130	5.947	5.464	5.690	8.837	5.948	4.790	4.716	2.581	11.430	11.553	2.561	3.495	5.596	9.510	2.154	2.066	2.946	5.292	5.054	5.112	5.315	4.549	1.889	1.082	2.595	2.090	1.049	2.054	2.852	4.364	0.306	1.957	1.538	1.718
6502	chr5	147463230	147502967	+	0	NA	intron (NM_006846, intron 15 of 32)	Tigger12|DNA|TcMar-Tigger	39563	NM_001127699	11005	Hs.331555	NM_006846	ENSG00000133710	SPINK5	LEKTI|LETKI|NETS|NS|VAKTI	serine peptidase inhibitor, Kazal type 5	protein-coding	nan	0.776	0.613	0.087	0.333	0.153	0.071	0.171	0.076	0.091	0.083	0.162	0.353	0.038	0.135	0.265	0.180	8.049	6.388	0.215	0.333	0.224	0.130	0.206	0.244	0.339	0.632	0.404	0.289	1.203	0.827	0.156	0.253	1.342	1.876	0.430	1.227	0.391	0.379	0.014	0.090	0.356	0.034	0.071	0.162	0.037	0.054	0.060	0.328
1294	chr11	9479999	9485503	+	0	NA	promoter-TSS (NR_036539)	promoter-TSS (NR_036539)	239	NM_001282656	7702	Hs.523471	NM_003442	ENSG00000166478	ZNF143	SBF|STAF|pHZ-1	zinc finger protein 143	protein-coding	5.343	5.471	5.785	7.211	8.063	4.369	5.840	3.736	0.379	2.817	1.386	10.464	12.042	6.374	0.174	11.879	9.963	9.225	14.572	12.857	13.016	9.733	6.933	18.182	19.401	7.085	8.878	6.337	11.378	10.416	10.189	8.255	11.904	8.290	10.091	9.400	8.713	4.111	2.049	5.979	5.468	1.898	2.521	5.840	10.464	0.996	1.771	4.039	3.078
461	chr1	116206737	116222073	+	0	NA	intron (NM_138959, intron 4 of 7)	intron (NM_138959, intron 4 of 7)	29155	NM_001172412	81839	Hs.515130	NM_138959	ENSG00000173218	VANGL1	KITENIN|LPP2|STB2|STBM2	VANGL planar cell polarity protein 1	protein-coding	nan	1.833	3.283	0.985	1.431	0.783	0.479	0.211	0.073	0.642	0.508	2.149	1.886	0.106	0.123	0.395	0.296	0.496	1.145	2.267	nan	2.977	0.705	0.642	0.714	0.530	0.861	3.794	3.293	0.449	0.359	0.996	1.558	0.512	0.591	0.380	0.635	3.400	1.801	6.679	2.914	0.031	0.129	0.479	2.149	0.445	1.457	1.187	0.169
3451	chr17	48783241	48800781	+	0	NA	Intergenic	AluSx|SINE|Alu	-4894	NM_001330330	51747	Hs.130293	NM_006107	ENSG00000108848	LUC7L3	CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A	LUC7 like 3 pre-mRNA splicing factor	protein-coding	4.127	2.861	nan	2.925	4.387	2.514	2.041	1.753	0.420	2.008	0.996	2.955	4.750	2.523	0.117	4.557	5.025	3.927	4.812	4.535	nan	4.723	3.278	10.996	11.894	3.071	3.736	5.868	nan	7.187	6.840	3.494	5.179	3.489	4.188	4.929	5.093	2.568	1.559	2.240	2.334	0.686	1.499	2.041	2.955	1.141	1.926	2.134	1.530
7894	chr8	118233270	118254338	+	0	NA	Intergenic	Intergenic	96467	NM_001172814	169026	Hs.532270	NM_173851	ENSG00000164756	SLC30A8	ZNT8|ZnT-8	solute carrier family 30 member 8	protein-coding	nan	nan	0.953	0.202	0.249	0.129	0.290	0.142	0.069	0.164	0.125	0.086	1.116	0.038	0.064	0.299	0.143	0.152	0.345	1.286	1.422	nan	0.484	0.646	nan	0.344	nan	0.274	0.253	0.367	0.165	0.105	0.222	1.700	1.227	0.257	0.494	1.317	0.916	8.965	0.101	0.466	0.124	0.290	0.086		0.034	0.061	0.141
7111	chr6	170439115	170476743	+	0	NA	Intergenic	Intergenic	-17937	NR_125878	102724511	Hs.550045	NR_125878		LOC102724511	-	uncharacterized LOC102724511	ncRNA	nan	0.679	nan	0.473	0.691	0.418	1.934	0.050	0.056	0.105	0.090	6.112	0.591	0.191	0.114	0.759	1.008	0.523	0.809	nan	3.400	nan	0.980	1.975	2.056	0.079	0.147	nan	1.503	0.546	0.373	0.385	0.441	0.441	0.566	0.223	0.363	0.839	0.497	2.427	0.482	0.056	0.151	1.934	6.112	0.235	1.472	0.098	0.043
6345	chr5	82111285	82119407	+	0	NA	Intergenic	L2|LINE|L2	-20628	NR_039773	100616297		NR_039773	ENSG00000283359	MIR3977	-	microRNA 3977	ncRNA	0.785	1.145	0.628	0.021	1.046	0.592	0.350	0.261	0.020	0.080	0.134	0.088	0.252	0.093	0.201	0.721	0.421	9.450	3.469	0.462	0.421	0.077	0.007	0.141	0.161	0.450	0.551	0.206	0.196	0.578	0.300	0.127	0.213	0.964	1.129	0.267	nan	0.419	0.470	0.027	0.144	0.094	0.194	0.350	0.088	0.012	0.050	0.012	0.060
4640	chr2	183987969	183991523	+	0	NA	intron (NR_109856, intron 1 of 7)	intron (NR_109856, intron 1 of 7)	663	NM_001287585	129401	Hs.180591	NM_138285	ENSG00000163002	NUP35	MP-44|MP44|NP44|NUP53	nucleoporin 35	protein-coding	5.541	3.622	3.637	6.060	4.022	2.302	3.888	2.048	0.090	2.277	1.417	4.162	10.469	3.207	0.113	5.935	6.828	5.184	8.330	7.934	6.206	8.953	4.446	16.962	18.924	nan	7.778	16.584	22.569	9.028	10.201	5.113	7.450	5.007	5.097	7.849	7.789	3.405	1.944	3.470	1.983	0.622	2.014	3.888	4.162	0.979	2.705	2.233	1.570
1358	chr11	30602926	30620356	+	0	NA	Intergenic	Intergenic	-3711	NM_001145399	744	Hs.289795	NM_001584	ENSG00000066382	MPPED2	239FB|C11orf8	metallophosphoesterase domain containing 2	protein-coding	0.652	0.878	nan	0.081	0.159	0.145	0.382	0.109	0.028	0.091	0.100	0.041	0.414	0.106	0.092	0.622	0.742	0.791	0.971	0.238	0.346	0.252	0.125	0.154	0.229	0.221	0.358	0.118	0.097	0.877	0.704	1.146	2.131	6.404	6.106	0.461	nan	0.196	0.313	0.381	1.808	2.597	2.534	0.382	0.041	0.011	0.006	0.920	0.085
782	chr1	202417332	202454846	+	0	NA	intron (NM_032103, intron 1 of 11)	intron (NM_032103, intron 1 of 11)	4218	NM_032103	4660	Hs.444403	NM_002481	ENSG00000077157	PPP1R12B	MYPT2|PP1bp55	protein phosphatase 1 regulatory subunit 12B	protein-coding	1.130	1.347	1.097	0.494	0.430	0.246	0.400	0.277	0.103	0.258	0.240	0.250	0.421	0.090	0.118	0.597	0.462	1.133	0.806	0.741	0.789	0.750	0.213	nan	nan	0.605	0.877	1.796	1.417	0.533	0.400	0.176	0.269	0.235	0.489	0.681	2.159	0.684	0.553	0.798	4.356	0.071	0.091	0.400	0.250	0.047	0.094	0.024	0.241
5225	chr22	27453050	27457973	+	0	NA	intron (NM_001318329, intron 1 of 1)	intron (NM_001318329, intron 1 of 1)	969	NM_001318329	284898	Hs.350813	NM_001318329		LOC284898	-	uncharacterized LOC284898	protein-coding	nan	0.460	0.465	0.090	0.707	0.258	0.310	0.138	0.110	0.065	0.133	0.218	0.525	0.023	0.074	3.207	4.816	9.032	nan	0.288	0.244	0.317	0.146	1.818	1.926	0.446	nan	0.303	0.351	0.289	0.158	1.034	1.976	0.073	0.114	0.050	nan	0.429	0.907		0.108	0.018	0.145	0.310	0.218	0.039		0.965	0.025
6510	chr5	149155924	149191313	+	0	NA	intron (NM_001172699, intron 1 of 10)	MER58A|DNA|hAT-Charlie	22115	NM_001172699	133522	Hs.483816	NM_133263	ENSG00000155846	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	PPARG coactivator 1 beta	protein-coding	nan	1.546	0.680	0.990	0.290	0.127	0.249	0.128	0.086	0.322	0.165	0.183	0.793	0.089	0.122	0.474	0.828	0.323	0.536	0.332	0.308	1.153	0.251	0.739	0.837	0.577	0.973	4.114	4.198	0.774	0.746	0.678	0.793	0.887	1.461	0.438	1.149	0.666	0.447	0.130	0.405	0.136	0.548	0.249	0.183	0.130	0.682	0.372	0.239
3607	chr17	78799236	78814996	+	0	NA	intron (NM_001163034, intron 9 of 29)	intron (NM_001163034, intron 9 of 29)	-27684	NR_110852	101928855	Hs.670692	NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA	2.670	1.734	2.920	1.098	1.172	0.484	3.987	0.930	0.256	1.171	0.508	1.595	4.007	0.089	0.126	1.715	1.798	1.219	1.781	3.374	2.399	2.872	0.892	0.977	1.048	nan	4.670	2.628	4.137	2.976	2.891	0.966	1.370	1.821	2.623	1.848	2.286	nan	1.262	0.704	1.805	0.241	0.663	3.987	1.595	0.985	4.872	0.572	0.801
3648	chr18	5283942	5300165	+	0	NA	exon (NM_001243702, exon 4 of 4)	exon (NM_001243702, exon 4 of 4)	3648	NM_001243702	7541	Hs.592340	NM_003409	ENSG00000198081	ZBTB14	ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478	zinc finger and BTB domain containing 14	protein-coding	1.702	1.876	2.186	2.856	1.862	0.882	0.807	0.920	0.150	1.138	0.605	2.040	nan	1.700	0.127	1.579	2.628	2.177	2.399	5.046	4.070	nan	1.990	2.081	1.948	1.000	nan	7.825	9.485	nan	2.544	0.862	1.653	3.823	3.052	0.781	nan	nan	1.423	2.518	1.719	0.875	1.097	0.807	2.040	0.437	1.171	0.368	0.206
781	chr1	202308840	202319555	+	0	NA	Intergenic	Intergenic	-3103	NM_001310326	29089	Hs.5199	NM_014176	ENSG00000077152	UBE2T	FANCT|HSPC150|PIG50	ubiquitin conjugating enzyme E2 T	protein-coding	3.788	3.626	3.648	2.127	2.910	1.388	2.099	0.990	0.392	2.188	1.168	2.837	5.420	1.183	0.163	2.605	2.558	5.275	7.860	5.677	5.001	3.107	1.299	nan	nan	3.304	4.181	3.888	5.530	2.715	2.829	1.021	1.500	5.212	5.920	3.173	4.282	2.249	1.367	2.667	4.781	0.948	1.218	2.099	2.837	0.953	1.013	0.501	1.078
8029	chr9	6086926	6091933	+	0	NA	Intergenic	Intergenic	-73789	NM_012416	26953	Hs.167496	NM_012416	ENSG00000137040	RANBP6	-	RAN binding protein 6	protein-coding	0.633	1.547	0.724	0.122	0.121	0.064	0.231	0.075		0.081	0.115	0.072	0.298	0.043	0.096	1.479	2.132	9.183	1.028	0.306	0.299	0.174	0.147	10.361	10.182	0.327	0.659	0.210	0.219	0.433	0.152	0.631	0.675	0.093	0.082	0.148	nan	0.810	0.931	0.045	0.143	0.019	0.047	0.231	0.072	0.020		0.257	0.024
3015	chr16	754359	761631	+	0	NA	Intergenic	Intergenic	-2170	NM_153350	146330	Hs.513244	NM_153350	ENSG00000127585	FBXL16	C16orf22|Fbl16|c380A1.1	F-box and leucine rich repeat protein 16	protein-coding	4.046	nan	1.329	1.470	1.727	0.761	6.767	0.048		0.612	0.241	2.626	5.175	0.840	0.033	2.620	4.237	0.091	0.149	4.000	3.503	6.792	2.791	0.265	0.241	1.302	nan	0.656	1.126	3.228	3.791	0.735	1.678	4.368	3.799	1.409	1.726	0.961	0.613	3.028	5.798	1.522	0.677	6.767	2.626	2.009	1.333	0.790	0.239
1950	chr12	53287527	53323073	+	0	NA	intron (NM_001256293, intron 1 of 8)	L2c|LINE|L2	-6432	NM_002273	3856	Hs.533782	NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding	nan	1.939	0.704	2.948	3.294	1.700	0.661	0.199	0.134	0.828	0.571	4.914	6.432	0.049	0.079	nan	3.461	0.937	1.628	3.393	nan	4.557	1.461	1.749	1.794	0.207	nan	8.103	nan	0.648	0.506	1.134	1.824	1.092	1.161	0.162	0.191	1.829	1.001	1.510	4.138	0.300	1.399	0.661	4.914	0.448	0.548	0.928	0.024
6987	chr6	135816755	135820709	+	0	NA	promoter-TSS (NR_026805)	promoter-TSS (NR_026805)	171	NM_017651	54806	Hs.386684	NM_017651	ENSG00000135541	AHI1	AHI-1|JBTS3|ORF1|dJ71N10.1	Abelson helper integration site 1	protein-coding	7.129	4.885	3.270	9.098	6.252	3.607	7.387	3.873	0.085	2.103	0.663	6.742	10.624	5.682	0.198	6.462	6.592	7.298	10.495	10.213	9.500	15.337	12.816	9.848	9.971	4.714	5.527	8.120	12.415	4.900	4.659	2.087	3.924	11.640	13.002	4.628	nan	3.623	2.301	5.424	4.745	1.835	1.422	7.387	6.742	1.909	3.881	1.455	0.745
5748	chr3	184078553	184090307	+	0	NA	intron (NM_001278715, intron 3 of 3)	intron (NM_001278715, intron 3 of 3)	3659	NM_001278714	5437	Hs.432574	NM_006232	ENSG00000163882	POLR2H	RPABC3|RPB17|RPB8	RNA polymerase II subunit H	protein-coding	4.030	3.433	2.242	2.574	4.613	2.407	1.534	1.823	0.373	2.355	1.314	1.877	8.760	1.769	0.110	2.062	2.605	2.630	3.669	4.066	3.363	6.632	3.026	3.921	4.056	2.536	3.468	4.276	5.695	4.107	4.719	1.161	2.521	2.599	2.533	3.043	3.807	1.865	1.032	1.695	1.861	0.623	2.050	1.534	1.877	0.719	1.594	0.913	1.797
5578	chr3	140659812	140664044	+	0	NA	intron (NM_001104647, intron 1 of 6)	intron (NM_001104647, intron 1 of 6)	1266	NM_001104647	55186	Hs.144130	NM_018155	ENSG00000114120	SLC25A36	PNC2	solute carrier family 25 member 36	protein-coding	7.258	nan	nan	5.747	4.247	2.547	2.452	2.456	0.151	3.823	1.490	3.385	4.357	2.083	0.090	3.668	4.616	5.005	7.087	7.545	6.425	12.202	5.886	7.664	8.255	3.824	nan	3.577	nan	13.247	15.343	3.249	6.775	3.441	2.986	9.293	8.390	2.764	1.736	2.036	2.670	0.517	2.858	2.452	3.385	1.127	1.316	1.335	1.836
5327	chr3	13364578	13390358	+	0	NA	intron (NM_024923, intron 27 of 39)	intron (NM_024923, intron 27 of 39)	84351	NM_024923	23225	Hs.475525	NM_024923	ENSG00000132182	NUP210	GP210|POM210	nucleoporin 210	protein-coding	nan	0.632	0.929	0.785	0.562	0.224	0.299	0.086	0.078	1.798	1.378	0.520	1.797	0.059	0.077	0.241	0.347	0.333	0.590	2.256	2.118	1.816	0.791	0.433	0.441	0.228	0.267	5.822	5.990	0.336	0.264	0.401	0.546	0.259	0.275	0.246	0.342	1.517	0.721	0.168	1.015	0.100	0.064	0.299	0.520	0.045	1.346	0.200	0.063
8268	chr9	127018338	127040125	+	0	NA	intron (NM_001166168, intron 1 of 9)	intron (NM_001166168, intron 1 of 9)	8701	NM_001166168	10783	Hs.197071	NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding	nan	nan	2.923	1.587	0.634	0.311	0.622	0.821	0.134	0.515	0.352	0.766	nan	0.319	0.078	3.964	4.106	0.392	0.670	1.865	1.506	1.078	0.367	1.921	1.883	0.776	nan	1.935	2.745	1.790	2.019	0.702	1.118	0.874	0.894	0.675	0.619	nan	1.445	0.955	0.114	0.084	0.222	0.622	0.766	0.089	0.300	0.310	0.250
1890	chr12	29385919	29400433	+	0	NA	intron (NM_001271784, intron 1 of 10)	LTR85c|LTR|Gypsy?	16620	NM_018099	55711	Hs.684482	NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding	nan	nan	nan	0.270	0.200	0.121	0.985	0.227	0.056	0.086	0.123	0.058	0.296	0.097	0.130	0.227	0.166	0.189	0.252	0.428	0.471	0.170	0.093	0.477	0.454	3.617	3.689	0.169	0.192	0.777	0.645	0.194	0.206	0.038	0.035	0.657	2.727	0.247	0.342	0.066	0.098		0.082	0.985	0.058	0.209	0.048	0.051	0.433
6281	chr5	58892243	58903830	+	0	NA	intron (NM_001165899, intron 3 of 16)	L1MA8|LINE|L1	-15712	NM_006203	5144	Hs.117545	NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding	nan	nan	0.962	0.091	0.680	0.304	0.376	0.363	0.193	0.258	0.258	0.198	0.402	0.196	0.166	0.247	0.153	0.355	0.367	0.352	0.434	nan	0.612	0.189	0.127	3.793	3.641	0.570	0.482	nan	0.165	0.014	0.102	1.028	1.686	0.359	0.910	0.508	0.387	0.072	0.038	0.180	0.034	0.376	0.198	0.016	0.306	0.025	0.201
872	chr1	218536468	218567516	+	0	NA	intron (NM_001135599, intron 2 of 7)	AluJr|SINE|Alu	-32972	NR_046268	728463	Hs.568469	NR_046268	ENSG00000232480	TGFB2-AS1	-	TGFB2 antisense RNA 1 (head to head)	ncRNA	1.661	1.179	1.416	2.471	2.213	0.989	0.734	0.834	0.207	0.444	0.293	0.243	nan	0.077	0.108	0.622	0.837	1.280	4.925	0.935	0.998	nan	0.622	0.473	0.507	0.312	nan	3.264	2.271	0.896	0.739	0.128	0.186	1.380	2.139	0.605	1.320	1.017	0.675	0.047	0.151	0.304	0.296	0.734	0.243	0.141	0.624	0.057	0.400
1146	chr10	77155203	77178790	+	0	NA	intron (NR_110302, intron 1 of 1)	CpG-2974	-1919	NR_110304	101929234	Hs.694695	NR_110304		LOC101929234	-	uncharacterized LOC101929234	ncRNA	1.653	nan	4.391	1.380	4.711	2.543	1.028	0.880	0.082	0.732	0.339	3.546	5.169	1.970	0.090	3.425	5.131	1.848	2.103	3.017	2.402	3.473	1.162	1.222	1.259	0.600	0.933	3.855	nan	0.831	0.831	2.458	4.778			0.190	nan	1.503	0.833	1.260	1.736		1.731	1.028	3.546	0.431	0.856	2.329	0.073
89	chr1	14226471	14233030	+	0	NA	Intergenic	Intergenic	153874	NM_001007257	7799	Hs.371823	NM_012231	ENSG00000116731	PRDM2	HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2	PR/SET domain 2	protein-coding	0.683	0.971	nan	0.290	0.470	0.198	0.107	0.045	0.049	0.048	0.038	0.075	0.802	0.036	0.068	0.459	0.422	7.064	2.350	0.513	0.504	1.212	0.417	0.473	nan	0.163	nan	1.081	1.004	nan	0.173	0.459	0.744	0.054	0.154	0.201	0.228	0.666	0.497	0.874	0.122	0.014	0.060	0.107	0.075	0.030	0.200	0.347	0.019
8058	chr9	14051507	14067509	+	0	NA	Intergenic	Intergenic	121293	NM_001282787	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding	nan	nan	0.934	0.248	0.532	0.323	0.400	0.136	0.080	0.177	0.152	1.100	1.592	0.034	0.068	0.249	0.085	0.391	0.732	1.546	1.864	0.463	0.294	0.104	0.090	5.571	6.993	0.730	1.256	0.476	0.336	0.208	0.312	0.248	0.233	0.190	0.428	1.148	0.866	7.513	0.239	0.149	0.084	0.400	1.100	0.043	0.082	0.104	0.061
988	chr10	1450650	1530046	+	0	NA	intron (NM_018702, intron 1 of 9)	intron (NM_018702, intron 1 of 9)	-78477	NR_033387	642394	Hs.568831	NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	ncRNA	0.483	0.444	0.725	0.539	4.121	2.138	0.492	0.138	0.105	1.249	0.574	5.488	0.537	0.031	0.076	0.803	1.330	0.117	0.150	1.999	2.122	0.267	0.134	0.739	0.773	0.105	0.191	3.573	3.818	0.166	0.082	0.933	1.852	0.029	0.045	0.084	0.110	0.044	0.053	0.813	4.051	0.007	0.050	0.492	5.488	0.192	0.184	2.278	0.017
4342	chr2	50991791	51030040	+	0	NA	intron (NM_001135659, intron 5 of 23)	intron (NM_001135659, intron 5 of 23)	-87515	NR_130470	103504737		NR_130470	ENSG00000216191	MIR8485	hsa-mir-8485	microRNA 8485	ncRNA	1.038	nan	1.130	0.171	0.507	0.258	0.263	0.101	0.055	0.266	0.234	0.356	0.585	0.043	0.114	0.329	0.241	0.188	0.250	0.434	0.625	0.369	0.163	0.342	0.350	2.621	3.296	0.696	0.835	1.134	0.825	0.132	0.199	0.776	0.790	0.634	1.339	0.342	0.334	0.161	0.310	0.267	0.071	0.263	0.356	0.777	0.048	0.045	0.282
1454	chr11	62647349	62651912	+	0	NA	intron (NM_001012662, intron 5 of 11)	intron (NM_001012662, intron 5 of 11)	459	NR_037193	6520	Hs.502769	NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding	nan	4.671	3.811	6.877	10.037	5.335	6.537	5.326	0.281	3.058	1.195	6.211	19.070	7.417	0.301	6.807	6.831	8.093	12.883	8.976	7.073	8.564	5.956	12.581	12.824	4.662	5.884	7.831	10.816	3.246	3.973	7.594	12.790	9.332	12.252	3.249	7.883	2.614	1.030	7.900	8.027	1.972	7.495	6.537	6.211	1.379	2.073	3.657	1.274
6969	chr6	132546395	132564618	+	0	NA	Intergenic	Intergenic	100388	NR_038981	100507254	Hs.103070	NR_038981		LINC01013	-	long intergenic non-protein coding RNA 1013	ncRNA	0.731	0.711	0.644	0.107	0.193	0.114	0.147	0.332	0.105	0.077	0.085	0.046	0.225	5.179	0.174	0.388	0.249	0.185	0.316	0.238	0.250	nan	0.242	0.247	0.231	0.193	0.285	0.100	0.138	0.561	0.222	0.108	0.193	0.087	0.142	0.125	nan	0.413	0.431	0.020	0.045	0.016	0.013	0.147	0.046		0.034	0.033	0.041
3960	chr19	10340726	10353966	+	0	NA	Intergenic	Intergenic	-5398	NM_004230	9294	Hs.655405	NM_004230	ENSG00000267534	S1PR2	AGR16|DFNB68|EDG-5|EDG5|Gpcr13|H218|LPB2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	1.523	2.268	1.775	0.888	4.190	2.214	0.523	0.390	0.291	0.871	0.475	2.131	3.029	0.802	0.068	1.332	1.831	0.712	1.117	3.209	2.791	3.989	1.368	1.465	1.565	1.336	1.673	2.186	3.759	0.645	0.447	0.907	1.279	1.243	1.165	0.884	1.624	3.448	1.432	0.866	1.143	0.202	0.179	0.523	2.131	0.521	1.674	0.882	0.357
7717	chr8	63904472	63908563	+	0	NA	intron (NR_130764, intron 6 of 6)	intron (NR_130764, intron 6 of 6)	16097	NR_027378	643763	Hs.491856	NM_001039769	ENSG00000274956	UG0898H09	-	uncharacterized LOC643763	ncRNA	1.234	0.782	1.243	0.086	0.147	0.195	0.154	0.043	0.022	0.075	0.080	0.058	0.318		0.109	0.249	0.131	0.456	0.496	0.584	0.825	0.207	0.182	0.033	0.062	0.448	nan	0.061	0.144	nan	0.558	0.135	0.301	0.363	0.500	0.168	0.188	0.680	0.758	0.163	0.057	0.118	0.020	0.154	0.058	4.604		0.050	0.215
5117	chr21	38628577	38641404	+	0	NA	intron (NM_001331022, intron 1 of 6)	intron (NM_001331022, intron 1 of 6)	4843	NM_006052	10311	Hs.369488	NM_006052	ENSG00000157538	DSCR3	DCRA|DSCRA	DSCR3 arrestin fold containing	protein-coding	3.002	2.700	4.349	3.788	2.838	1.560	1.440	1.051	0.210	0.868	0.498	4.275	5.646	2.518	0.122	5.676	6.049	3.831	5.557	5.861	5.088	3.798	1.607	5.409	5.240	3.224	4.173	4.373	6.550	4.516	4.448	3.120	4.493	3.878	3.853	2.460	3.006	nan	1.771	3.197	3.270	0.876	1.463	1.440	4.275	0.849	1.764	2.184	1.096
1584	chr11	94799260	94803388	+	0	NA	non-coding (NR_103726, exon 1 of 2)	non-coding (NR_103726, exon 1 of 2)	1283	NR_103726	10929	Hs.476680	NM_032102	ENSG00000263465	SRSF8	DSM-1|SFRS2B|SRP46	serine and arginine rich splicing factor 8	protein-coding	4.680	nan	3.786	5.306	3.771	2.600	4.971	0.738	0.246	2.772	1.282	2.841	11.609	2.805	0.201	11.267	15.022	4.770	nan	13.661	11.064	4.362	1.004	24.396	25.345	6.984	7.100	7.641	13.204	9.553	12.288	7.603	14.407	7.677	6.181	5.287	6.074	4.904	2.653	6.604	5.407	1.035	3.074	4.971	2.841	1.605	3.171	6.209	2.215
7174	chr7	14979714	15017318	+	0	NA	Intergenic	Intergenic	-117441	NM_004080	1607	Hs.567255	NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding	nan	1.116	nan	0.110	0.378	0.196	0.153	0.153	0.094	0.146	0.168	0.158	0.301	0.089	0.164	nan	0.345	1.574	0.862	0.349	0.500	0.330	0.179	0.327	0.301	0.878	1.099	0.343	0.389	0.560	0.277	0.101	0.168	2.411	1.770	0.418	0.912	0.529	0.462	0.025	0.071	0.238	0.089	0.153	0.158	0.024	0.119	0.039	0.066
1675	chr11	116557056	116579331	+	0	NA	Intergenic	AluSc|SINE|Alu	58054	NR_135069	101929011	Hs.733911	NR_135069	ENSG00000237937	LOC101929011	-	uncharacterized LOC101929011	ncRNA	0.786	0.801	0.910	0.247	0.557	0.390	0.440	0.040	0.036	0.409	0.370	1.094	0.719	0.083	0.121	0.465	nan	0.222	0.289	2.333	2.133	1.478	0.489	0.211	0.238	0.581	nan	1.727	2.040	0.962	0.893	0.669	0.971	0.407	0.579	0.466	1.273	2.593	1.382	0.526	0.270	0.068	0.072	0.440	1.094	0.213	0.249	0.195	0.334
649	chr1	167893351	167908625	+	0	NA	intron (NM_001143674, intron 2 of 5)	intron (NM_001143674, intron 2 of 5)	4451	NR_026550	25874	Hs.517768	NM_015415	ENSG00000143158	MPC2	BRP44	mitochondrial pyruvate carrier 2	protein-coding	3.122	nan	3.207	1.772	1.875	1.007	1.965	1.804	0.230	1.513	0.864	1.793	4.535	2.322	0.164	2.616	2.899	4.019	5.624	4.932	nan	3.057	1.735	3.285	3.494	2.841	3.254	2.639	nan	2.393	2.443	4.690	7.921	2.385	2.145	3.461	3.696	1.600	0.996	1.001	3.755	0.513	1.532	1.965	1.793	0.374	1.286	5.303	1.086
7219	chr7	26879033	26905532	+	0	NA	intron (NM_001303468, intron 3 of 12)	intron (NM_001303468, intron 3 of 12)	5060	NM_001303468	8935	Hs.200770	NM_003930	ENSG00000005020	SKAP2	PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R	src kinase associated phosphoprotein 2	protein-coding	2.399	1.592	1.796	0.631	0.752	0.431	0.243	0.280	0.127	0.499	0.313	0.673	1.670	0.581	0.180	4.389	3.812	4.861	nan	1.652	1.468	1.626	0.696	2.065	2.205	1.982	2.336	1.810	2.439	0.802	0.634	0.907	1.291	5.466	6.036	0.314	nan	1.083	0.661	0.325	1.053	1.589	0.425	0.243	0.673	0.151	0.349	0.514	0.070
5527	chr3	127406623	127483469	+	0	NA	intron (NM_001003794, intron 3 of 7)	(GAAA)n|Simple_repeat|Simple_repeat	53265	NR_033429	80325	Hs.107812	NM_032548	ENSG00000114626	ABTB1	BPOZ|BTB3|BTBD21|EF1ABP|PP2259	ankyrin repeat and BTB domain containing 1	protein-coding	2.226	nan	1.263	0.173	0.591	0.288	0.339	1.082	0.195	0.779	0.508	0.226	0.720	0.054	0.072	0.615	0.790	0.344	0.364	0.767	0.735	1.694	0.579	0.358	0.362	2.224	nan	0.357	0.441	5.996	5.812	0.460	0.534	0.406	0.435	0.874	2.026	1.641	0.994	3.670	1.659	0.143	0.160	0.339	0.226	0.843	0.333	0.103	0.761
3903	chr18	74531413	74537176	+	0	NA	promoter-TSS (NM_001306089)	promoter-TSS (NM_001306089)	-43	NR_040024	100131655	Hs.385806	NR_040024	ENSG00000264278	LOC100131655	-	uncharacterized LOC100131655	ncRNA	nan	nan	4.458	4.803	4.768	2.223	8.069	1.153	0.111	2.585	1.241	13.935	8.311	3.556	0.078	5.585	6.826	8.447	7.868	10.531	nan	12.504	7.210	16.106	15.261	2.387	3.075	10.882	18.456	6.063	6.580	2.834	5.918	10.478	9.594	4.658	3.298	2.532	1.466	4.105	2.948	2.491	2.992	8.069	13.935	0.468	2.415	1.341	1.548
2150	chr12	114367631	114374022	+	0	NA	intron (NM_001146699, intron 16 of 24)	intron (NM_001146699, intron 16 of 24)	33350	NM_001146698	9904	Hs.7482	NM_016196	ENSG00000122965	RBM19	-	RNA binding motif protein 19	protein-coding	nan	nan	0.578	0.055	0.173	0.100	6.975	0.188	0.100	0.123	0.195	0.093	0.283	0.101	0.115	0.417	0.373	0.157	0.309	nan	nan	nan	0.100	0.476	0.596	0.241	0.384	nan	nan	0.254	0.304	0.495	0.751	0.152	0.103	1.931	1.935	nan	0.455	0.034	0.236	0.060	0.125	6.975	0.093	0.015	0.024	0.476	0.850
1318	chr11	12819156	12838323	+	0	NA	intron (NM_021961, intron 3 of 12)	intron (NM_021961, intron 3 of 12)	132770	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding	1.223	nan	2.449	1.984	2.620	1.280	2.360	0.973	0.082	1.340	0.674	5.535	3.409	0.176	0.066	nan	1.164	1.653	4.050	3.318	3.466	3.540	1.740	0.921	0.863	1.218	nan	2.799	4.020	0.934	0.894	0.911	2.075	2.779	2.507	1.515	4.439	2.722	nan	3.496	2.883	0.764	0.972	2.360	5.535	0.217	0.244	1.814	1.249
642	chr1	165795777	165803085	+	0	NA	intron (NM_012474, intron 1 of 6)	AluJb|SINE|Alu	2699	NM_012474	7371	Hs.458360	NM_012474	ENSG00000143179	UCK2	TSA903|UK|UMPK	uridine-cytidine kinase 2	protein-coding	7.216	nan	5.469	4.468	3.381	1.706	5.768	1.788	0.197	3.273	1.352	5.813	6.985	3.195	0.159	9.087	8.181	6.758	7.846	11.679	nan	5.674	2.504	6.272	6.145	4.961	6.210	7.812	nan	7.651	9.612	7.017	12.219	6.350	5.666	10.258	7.439	3.285	1.780	1.366	3.350	1.265	3.885	5.768	5.813	1.382	2.643	4.696	2.916
8191	chr9	91924533	91930993	+	0	NA	TTS (NR_036108)	TTS (NR_036108)	623	NR_036108	100422936		NR_036108	ENSG00000265112	MIR3153	mir-3153	microRNA 3153	ncRNA	4.930	nan	4.609	6.600	5.806	3.189	4.142	2.570	0.249	3.221	1.211	4.898	7.392	3.181	0.155	3.651	3.128	6.729	9.046	9.083	7.867	5.379	3.727	8.947	8.845	3.410	3.940	6.455	11.136	4.361	4.472	2.935	5.919	8.055	8.204	6.962	6.045	4.069	2.110	1.714	2.454	1.781	1.740	4.142	4.898	1.642	2.775	1.564	2.071
1764	chr12	2185069	2193822	+	0	NA	intron (NM_001129830, intron 1 of 47)	AluSz|SINE|Alu	26994	NM_199460	775	Hs.118262	NM_000719	ENSG00000151067	CACNA1C	CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS	calcium voltage-gated channel subunit alpha1 C	protein-coding	1.612	nan	nan	0.170	0.225	0.251	0.175	0.237	0.182	0.623	0.459	0.626	1.199	0.111	0.117	0.193	0.331	0.190	0.206	nan	1.682	0.123	0.091	0.223	0.263	1.289	1.876	0.279	0.537	0.833	0.992	0.132	0.239	3.168	2.955	0.807	nan	0.976	0.530	0.146	0.144	0.918	0.202	0.175	0.626	2.630	0.047	0.056	0.315
6290	chr5	63220727	63230323	+	0	NA	Intergenic	AluSx3|SINE|Alu	32594	NM_000524	3350	Hs.247940	NM_000524	ENSG00000178394	HTR1A	5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD	5-hydroxytryptamine receptor 1A	protein-coding	0.975	1.162	2.546	0.037	0.102	0.100	0.188	0.063	0.084	0.049	0.043		0.197	0.023	0.139	0.163	0.117	0.164	0.294	0.130	0.162	0.173	0.065	0.052	0.041	3.228	3.316	0.506	0.355	7.936	5.359	0.107	0.155	0.139	0.188	0.404	1.722	0.366	0.340	0.142	0.131	0.030	0.059	0.188		0.101	0.070	0.004	1.659
4849	chr20	10614459	10656073	+	0	NA	intron (NM_000214, intron 5 of 25)	intron (NM_000214, intron 5 of 25)	-4923	NR_106930	102465525		NR_106930	ENSG00000273745	MIR6870	hsa-mir-6870	microRNA 6870	ncRNA	0.979	nan	1.398	0.973	0.438	0.199	0.638	4.081	0.351	0.290	0.154	0.260	2.241	1.144	0.077	0.908	0.953	2.470	6.510	0.880	0.779	1.512	0.551	0.736	0.679	1.008	1.689	1.401	1.982	0.581	0.461	0.368	0.876	0.535	0.661	0.391	0.778	0.849	0.627	0.358	0.552	0.094	0.317	0.638	0.260	0.162	0.459	0.281	0.142
5592	chr3	144932634	144939684	+	0	NA	Intergenic	AluJr|SINE|Alu	943123	NM_000935	5352	Hs.477866	NM_000935	ENSG00000152952	PLOD2	BRKS2|LH2|TLH	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein-coding	1.810	nan	nan	0.251	0.668	0.408	0.236	0.084	0.255	0.199	0.203	0.051	0.201	0.015	0.054	0.306	0.198	0.196	0.340	0.420	0.336	nan	3.763	0.265	0.160	1.148	nan	0.610	nan	nan	0.546	0.153	0.256	0.094	0.100	0.970	2.951	0.460	0.328	0.032	0.063		0.055	0.236	0.051	0.014	0.158	0.056	0.157
184	chr1	32477964	32481829	+	0	NA	non-coding (NR_073499, exon 1 of 11)	non-coding (NR_073499, exon 1 of 11)	601	NR_073498	10657	Hs.445893	NM_006559	ENSG00000121774	KHDRBS1	Sam68|p62|p68	KH RNA binding domain containing, signal transduction associated 1	protein-coding	8.568	nan	6.547	14.778	6.581	3.710	5.254	3.951	0.208	4.898	2.417	13.970	15.890	8.230	0.261	7.081	7.054	12.146	14.517	17.900	14.681	7.417	3.155	18.145	18.800	6.369	7.816	6.349	10.196	nan	8.081	3.825	8.421	3.501	4.361	8.336	8.966	4.605	nan	8.853	6.256	1.063	4.066	5.254	13.970	2.155	4.023	2.468	3.146
776	chr1	201716575	201740135	+	0	NA	intron (NM_001167738, intron 1 of 26)	intron (NM_001167738, intron 1 of 26)	19392	NM_001167738	89796	Hs.585374	NM_020443	ENSG00000134369	NAV1	POMFIL3|STEERIN1|UNC53H1	neuron navigator 1	protein-coding	1.571	1.190	1.238	0.176	0.569	0.314	0.368	2.176	0.600	0.301	0.333	0.496	0.468	0.106	0.142	0.721	1.561	0.532	0.758	0.839	1.007	0.613	0.290	nan	nan	3.438	4.371	0.747	0.787	0.609	0.419	0.146	0.316	1.496	1.113	0.407	0.804	0.639	0.586	0.085	0.550	0.675	0.225	0.368	0.496	0.117	0.069	0.050	0.148
3738	chr18	35011435	35033716	+	0	NA	intron (NM_001025087, intron 2 of 12)	intron (NM_001025087, intron 2 of 12)	23892	NR_132967	106635546		NR_132967		SNORA111	-	small nucleolar RNA, H/ACA box 111	snoRNA	nan	0.986	0.848	0.211	1.314	0.713	1.637	0.034	0.021	0.498	0.313	0.817	0.411	0.057	0.056	0.857	1.772	0.284	0.460	2.025	2.132	3.046	1.120	0.097	0.112	0.843	1.116	nan	1.257	0.912	0.983	0.257	0.364	1.902	1.375	0.462	0.684	3.551	2.303	0.649	0.242	0.655	0.309	1.637	0.817	0.481	0.136	0.125	0.182
1570	chr11	92103700	92156638	+	0	NA	intron (NM_001008781, intron 1 of 24)	AluSq|SINE|Alu	44907	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10|hFat3	FAT atypical cadherin 3	protein-coding	0.618	nan	0.559	0.187	0.167	0.109	0.185	0.167	0.039	0.089	0.105	0.088	0.432	0.083	0.120	2.690	1.813	3.540	nan	0.503	0.632	0.113	0.080	3.765	3.973	0.658	0.907	0.610	0.610	0.506	0.367	0.811	1.314	0.378	0.549	0.232	nan	0.657	0.615	0.128	0.069	0.077	0.060	0.185	0.088	0.033	0.059	0.434	0.119
6381	chr5	96038286	96084077	+	0	NA	intron (NM_173060, intron 2 of 28)	MIRb|SINE|MIR	-18063	NR_104285	831	Hs.436186	NM_001750	ENSG00000153113	CAST	BS-17|PLACK	calpastatin	protein-coding	nan	1.495	1.301	0.232	1.526	0.809	0.474	0.315	0.119	0.426	0.215	0.182	0.478	0.139	0.127	0.212	0.222	0.593	1.204	0.411	0.456	0.402	0.238	0.670	0.668	0.593	0.813	0.857	1.014	0.616	0.361	0.335	0.393	1.800	2.243	0.965	nan	0.699	0.497	0.400	1.724	0.462	0.092	0.474	0.182	0.082	0.124	0.113	0.648
2673	chr14	74220400	74239421	+	0	NA	intron (NM_001043318, intron 1 of 11)	AluJb|SINE|Alu	-2909	NM_194278	91748	Hs.594157	NM_194278	ENSG00000156030	ELMSAN1	C14orf117|C14orf43|LSR68|MIDEAS|c14_5541	ELM2 and Myb/SANT domain containing 1	protein-coding	2.725	1.687	2.103	1.627	0.825	0.452	1.559	2.252	0.238	0.519	0.348	1.980	3.318	1.091	0.109	1.458	2.004	1.582	3.162	2.615	2.020	1.931	0.779	4.650	4.595	0.786	1.077	5.145	nan	2.221	2.362	1.415	2.432	1.712	1.579	1.587	2.206	1.498	nan	2.598	3.070	0.391	1.056	1.559	1.980	0.327	1.262	1.038	0.616
5625	chr3	159554584	159564731	+	0	NA	intron (NM_001197109, intron 1 of 6)	intron (NM_001197109, intron 1 of 6)	2007	NM_001197109	29970	Hs.134665	NM_014575	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding	nan	1.175	0.890	0.140	0.273	0.193	1.616	1.043	0.333	0.139	0.160	0.754	0.468	0.249	0.093	1.506	1.764	0.378	0.603	1.328	1.406	4.200	2.237	0.118	0.093	4.745	5.669	0.672	0.576	4.607	4.708	1.513	2.574	1.974	2.249	1.644	2.050	0.832	0.619	0.500	0.131	0.684	1.757	1.616	0.754	0.738	0.070	2.071	0.840
181	chr1	31943246	31959668	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	-20382	NR_034112	149086	Hs.729905	NR_034112	ENSG00000260386	LINC01225	-	long intergenic non-protein coding RNA 1225	pseudo	2.339	nan	1.070	1.029	0.342	0.254	0.524	0.140	0.078	1.097	0.465	0.720	0.715	0.033	0.129	0.712	1.144	0.310	0.546	1.273	1.274	nan	0.888	0.251	0.260	0.772	0.955	0.857	0.836	nan	2.919	0.265	0.566	3.408	5.716	0.370	0.637	1.104	nan	1.651	0.773	1.171	1.861	0.524	0.720	1.008	0.418	0.572	0.211
412	chr1	95871251	95876505	+	0	NA	Intergenic	Intergenic	-66415	NR_033966	440594	Hs.514123	NR_033966	ENSG00000233907	LINC01761	-	long intergenic non-protein coding RNA 1761	ncRNA	nan	nan	4.147	0.119	0.572	0.240	0.216	0.101	0.094	0.059	0.207	0.091	0.349	0.104	0.069	6.063	4.831	10.878	3.258	0.427	nan	0.146	0.102	0.230	0.228	2.529	nan	0.288	0.264	nan	4.478	1.631	1.878	0.421	0.395	1.909	3.640	0.422	0.614	0.033	0.051	0.072	2.692	0.216	0.091	0.746	0.039	0.914	0.446
6239	chr5	38527974	38559302	+	0	NA	intron (NM_002310, intron 1 of 19)	MIR|SINE|MIR	13110	NM_001127671	3977	Hs.133421	NM_002310	ENSG00000113594	LIFR	CD118|LIF-R|SJS2|STWS|SWS	leukemia inhibitory factor receptor alpha	protein-coding	1.222	2.519	nan	6.526	2.923	1.400	1.232	0.424	0.212	0.927	0.477	2.641	7.539	0.464	0.126	0.532	0.476	0.440	0.623	2.725	2.924	0.188	0.094	1.351	1.311	0.286	0.510	6.053	7.476	3.378	2.923	0.226	0.418	0.157	0.161	0.273	0.474	3.846	1.909	2.639	3.450	0.044	0.448	1.232	2.641	0.625	1.763	0.066	0.082
4933	chr20	34026913	34054625	+	0	NA	intron (NM_001319138, intron 1 of 3)	L2a|LINE|L2	1150	NR_031620	100302125		NR_031620	ENSG00000221763	MIR1289-1	MIRN1289-1|hsa-mir-1289-1	microRNA 1289-1	ncRNA	2.149	3.155	3.185	1.910	2.269	1.228	0.780	0.706	0.284	0.643	0.375	1.728	6.271	0.732	0.136	3.833	4.150	1.508	2.013	3.966	nan	4.231	1.768	3.051	3.276	1.513	2.094	4.754	6.600	2.534	2.379	1.949	2.808	2.273	2.466	1.806	nan	1.812	0.825	2.844	2.268	0.450	1.276	0.780	1.728	0.699	0.818	1.496	0.469
3721	chr18	31373827	31426055	+	0	NA	Intergenic	LTR12D|LTR|ERV1	228635	NM_001198549	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding	nan	0.975	0.924	2.902	3.295	1.565	0.984	0.072	0.052	0.538	0.482	5.855	1.310	0.029	0.088	0.445	0.328	0.303	0.342	6.012	7.421	1.792	0.507	0.211	0.206	0.353	0.464	nan	7.919	0.571	0.375	0.120	0.189	3.295	3.447	0.285	0.583	8.472	4.185	0.997	3.207	0.832	0.199	0.984	5.855	0.186	0.440	0.060	0.087
2893	chr15	59037613	59043229	+	0	NA	intron (NM_001320570, intron 1 of 14)	intron (NM_001320570, intron 1 of 14)	1756	NM_001110	102	Hs.172028	NM_001110	ENSG00000137845	ADAM10	AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz	ADAM metallopeptidase domain 10	protein-coding	3.100	3.135	3.166	2.606	2.874	1.455	1.890	2.843	0.170	1.312	0.914	4.312	6.989	2.324	0.113	2.846	3.775	8.425	8.401	8.010	6.474	3.676	1.026	5.504	5.413	3.163	3.917	3.736	6.406	11.362	12.601	2.886	6.172	3.114	3.433	4.423	4.723	1.515	0.747	1.685	2.733	0.743	1.658	1.890	4.312	0.754	2.149	2.221	1.145
2062	chr12	85861608	85886494	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	200015	NM_006982	8092	Hs.41683	NM_006982	ENSG00000180318	ALX1	CART1|FND3|HEL23	ALX homeobox 1	protein-coding	0.771	0.914	0.752	0.253	0.409	0.207	0.119	0.352	0.143	0.475	0.257	0.324	0.653	0.052	0.111	0.355	0.248	0.294	0.382	0.417	0.461	5.007	1.593	0.292	0.334	1.111	1.302	0.642	0.712	0.524	0.221	0.137	0.235	1.603	1.891	0.433	0.619	1.227	0.777	0.018	0.068	0.418	0.047	0.119	0.324	0.012	0.196	0.075	0.204
5204	chr22	24107063	24121146	+	0	NA	promoter-TSS (NM_005940)	promoter-TSS (NM_005940)	-902	NM_005940	4320	Hs.143751	NM_005940	ENSG00000099953	MMP11	SL-3|ST3|STMY3	matrix metallopeptidase 11	protein-coding	1.559	nan	1.521	1.239	1.005	0.539	0.806	0.433	0.284	0.846	0.292	2.401	4.665	0.757	0.070	2.372	2.433	1.517	2.022	2.790	2.221	3.552	1.168	2.466	2.749	1.380	2.230	2.109	2.659	2.560	2.626	0.976	1.280	2.115	2.333	1.542	2.381	3.533	1.764	0.499	1.565	0.354	0.913	0.806	2.401	1.133	1.037	0.540	0.750
3935	chr19	2048534	2069908	+	0	NA	Intergenic	AluJb|SINE|Alu	-7978	NM_017572	2872	Hs.515032	NM_017572	ENSG00000099875	MKNK2	GPRK7|MNK2	MAP kinase interacting serine/threonine kinase 2	protein-coding	2.438	2.838	4.675	3.058	2.971	1.577	2.065	1.540	0.415	0.762	0.468	1.834	2.841	2.463	0.163	1.696	3.001	1.580	2.572	2.220	2.324	2.137	0.888	1.896	1.977	1.887	2.674	3.491	nan	2.107	1.703	1.483	1.770	1.870	2.146	1.281	2.181	2.339	1.211	1.609	3.111	0.445	0.408	2.065	1.834	0.549	2.878	0.902	0.573
326	chr1	59773330	59786025	+	0	NA	intron (NM_001244714, intron 1 of 13)	AluY|SINE|Alu	3927	NM_001244714	55277	Hs.444301	NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding	1.152	0.905	1.908	0.196	0.371	0.189	0.227	0.599	0.113	0.122	0.170	0.208	0.383	0.086	0.113	0.376	0.348	0.304	0.306	0.572	0.669	0.476	0.167	0.349	0.385	5.493	5.975	0.841	0.703	0.443	0.284	0.169	0.298	0.148	0.150	0.473	nan	0.675	0.615	0.026	0.056	0.023	0.155	0.227	0.208	0.054	0.048	0.015	0.333
7740	chr8	71313494	71317374	+	0	NA	promoter-TSS (NM_001321712)	promoter-TSS (NM_001321712)	56	NM_001321712	10499	Hs.446678	NM_006540	ENSG00000140396	NCOA2	GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	9.742	3.588	5.589	7.252	6.341	3.188	5.366	5.033	0.620	3.659	1.581	9.309	20.045	6.069	0.138	3.117	7.213	4.382	6.188	15.582	12.204	7.144	2.997	12.380	11.956	4.634	5.722	5.676	7.519	3.710	5.119	3.182	9.752	8.300	6.295	4.995	7.334	5.263	2.581	4.215	9.386	4.291	6.896	5.366	9.309	0.706	6.561	3.952	2.957
6989	chr6	136608658	136617022	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-1851	NM_001077441	9774	Hs.486542	NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding	5.805	3.377	5.124	5.985	4.799	2.302	4.363	2.325	0.097	1.746	0.793	4.322	7.573	2.833	0.125	8.743	9.694	6.147	7.808	10.066	9.204	nan	9.439	15.676	16.964	3.296	3.896	5.100	8.691	10.004	10.426	6.654	9.164	7.963	7.093	8.254	nan	2.458	1.929	4.363	3.135	1.288	1.980	4.363	4.322	0.978	2.836	4.993	1.848
2886	chr15	57826168	57849302	+	0	NA	intron (NM_001252335, intron 17 of 19)	intron (NM_001252335, intron 17 of 19)	-46367	NR_104368	145781	Hs.437256	NM_001018090	ENSG00000137878	GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GRINL1A complex locus 1	protein-coding	1.702	0.692	2.432	0.571	1.405	0.760	0.348	0.535	0.098	0.176	0.104	0.744	0.944	0.052	0.072	0.359	0.380	0.334	0.929	1.046	1.110	1.763	0.439	0.194	0.170	2.457	3.412	3.103	4.193	5.072	5.014	0.278	0.462	0.485	0.589	0.822	2.800	0.656	0.523	0.440	0.212	0.050	0.669	0.348	0.744	0.659	1.144	0.087	1.435
2543	chr14	34302083	34324923	+	0	NA	Intergenic	Intergenic	106529	NM_001308103	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding	1.555	0.740	0.992	0.261	0.348	0.134	0.281	0.261	0.196	0.083	0.134	0.236	0.478	0.071	0.111	1.266	1.943	1.598	1.520	0.459	0.450	0.098	0.060	1.736	1.855	0.798	1.166	0.518	0.580	1.037	0.817	2.522	4.523	0.091	0.101	0.236	0.559	0.690	0.610	0.111	0.250	0.029	0.115	0.281	0.236	0.237	0.192	3.987	0.071
5650	chr3	170072379	170077225	+	0	NA	promoter-TSS (NM_005414)	promoter-TSS (NM_005414)	-671	NM_001145098	6498	Hs.536655	NM_005414	ENSG00000136603	SKIL	SNO|SnoA|SnoI|SnoN	SKI like proto-oncogene	protein-coding	9.869	5.021	5.333	5.465	5.204	2.314	4.360	3.348	0.218	4.089	2.019	6.026	5.466	6.911	0.130	3.208	5.670	4.425	6.662	7.223	6.417	10.416	3.116	9.750	9.735	4.061	5.754	8.139	10.378	12.830	14.360	2.649	5.548	6.230	4.923	7.760	10.285	2.221	1.277	5.401	2.221	2.063	4.226	4.360	6.026	1.321	3.035	2.646	4.432
5224	chr22	27287229	27305734	+	0	NA	Intergenic	Intergenic	-2774	NR_110540	101929539	Hs.517505	NR_110540	ENSG00000235271	LINC01422	-	long intergenic non-protein coding RNA 1422	ncRNA	nan	0.707	0.461	0.698	0.830	0.390	2.150	0.383	0.095	0.304	0.362	3.094	1.702	0.064	0.052	0.769	0.834	2.394	nan	1.888	1.903	2.517	0.674	2.592	2.620	0.549	nan	1.994	2.596	0.706	0.399	0.291	0.283	0.341	0.327	0.109	nan	2.786	1.473	0.113	0.175	0.046	0.073	2.150	3.094	0.179	0.176	0.041	0.080
5129	chr21	40890134	40911020	+	0	NA	Intergenic	Intergenic	76797	NM_007341	6450	Hs.473847	NM_007341	ENSG00000185437	SH3BGR	21-GARP	SH3 domain binding glutamate rich protein	protein-coding	nan	0.672	1.969	0.358	0.520	0.243	0.333	0.096	0.077	0.113	0.080	0.460	8.096	0.063	0.095	0.600	0.674	0.233	0.302	0.611	0.578	nan	0.190	0.238	0.243	0.225	nan	0.695	0.743	0.393	0.229	0.297	0.300	0.264	0.294	0.221	0.289	1.118	0.911	1.905	0.132	0.036	0.422	0.333	0.460	0.014	0.059	0.120	0.065
6660	chr6	21583993	21616701	+	0	NA	Intergenic	Intergenic	6375	NM_003107	6659	Hs.643910	NM_003107	ENSG00000124766	SOX4	EVI16	SRY-box 4	protein-coding	3.444	2.823	nan	4.276	3.534	2.036	2.964	2.082	0.307	1.811	0.939	5.653	nan	3.628	0.147	3.116	3.961	4.902	nan	7.221	5.862	nan	1.535	10.732	10.737	2.343	3.126	4.433	5.210	3.881	4.617	2.789	6.312	4.684	3.813	1.925	2.488	1.871	1.093	3.906	2.994	1.359	2.194	2.964	5.653	0.966	1.553	2.940	0.884
7212	chr7	26408902	26430360	+	0	NA	intron (NR_136272, intron 1 of 1)	intron (NR_136272, intron 1 of 1)	-3310	NR_136270	105375304	Hs.735352	NR_136270	ENSG00000225792	LOC105375304	-	uncharacterized LOC105375304	ncRNA	4.295	1.448	4.587	3.634	1.879	1.098	1.269	0.084	0.105	1.623	1.128	0.488	1.048	0.424	0.190	4.458	4.588	2.016	nan	2.649	2.488	4.001	1.414	1.898	1.843	1.882	2.438	5.156	4.956	1.204	1.127	1.512	2.732	3.656	3.752	1.173	nan	1.645	1.059	1.708	1.513	0.830	0.652	1.269	0.488	0.347	0.420	1.031	0.477
7189	chr7	19408165	19422927	+	0	NA	Intergenic	Intergenic	-230502	NM_152898	222894	Hs.592168	NM_152898	ENSG00000146618	FERD3L	N-TWIST|NATO3|NTWIST|PTFB|bHLHa31	Fer3 like bHLH transcription factor	protein-coding	nan	0.977	nan	0.191	0.182	0.044	0.223	0.289	0.131	0.826	0.655	0.073	0.669	0.103	0.150	nan	0.204	0.189	0.263	0.377	0.442	3.741	1.251	0.295	0.269	2.733	3.339	0.604	0.792	1.132	0.855	0.091	0.118	4.827	3.860	0.286	0.621	0.998	0.720	0.015	0.097	1.074	0.016	0.223	0.073	0.302	0.550	0.027	0.058
4681	chr2	206944155	206952689	+	0	NA	intron (NM_017759, intron 1 of 10)	intron (NM_017759, intron 1 of 10)	2484	NM_017759	54891	Hs.445036	NM_017759	ENSG00000114933	INO80D	-	INO80 complex subunit D	protein-coding	3.664	nan	3.838	3.535	4.122	2.218	4.315	2.367	0.321	1.546	0.896	5.528	7.957	3.010	0.124	4.388	5.646	4.893	7.130	5.512	6.825	3.074	2.613	17.255	17.771	3.426	4.142	5.999	9.539	6.045	5.852	4.084	7.746	2.873	2.300	5.599	4.394	1.957	0.933	1.841	1.961	0.762	2.567	4.315	5.528	1.158	2.144	2.017	1.951
4287	chr2	36704747	36721180	+	0	NA	intron (NM_016441, intron 7 of 16)	intron (NM_016441, intron 7 of 16)	112369	NM_001042548	9637	Hs.258563	NM_005102	ENSG00000171055	FEZ2	HUM3CL	fasciculation and elongation protein zeta 2	protein-coding	0.832	nan	nan	0.059	0.140	0.098	0.095	1.089	0.147	0.106	0.115	0.015	0.322	1.902	0.110	0.381	0.255	1.514	6.526	0.220	0.251	0.119	0.081	0.555	nan	0.404	0.600	0.263	0.246	nan	0.108	0.135	0.262	0.026	0.064	0.370	0.669	0.155	0.324	0.040	0.065	0.006	0.042	0.095	0.015		0.043	0.030	0.125
2791	chr14	105008368	105034461	+	0	NA	Intergenic	Intergenic	-24607	NM_001286399	400258	Hs.153827	NM_001008404	ENSG00000184601	C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding	1.264	0.615	0.473	0.067	0.178	0.086	0.127	0.074	0.057	0.079	0.123	0.069	1.176	0.054	0.078	0.511	0.662	0.217	0.278	0.977	1.053	0.363	0.136	0.069	0.092	3.908	4.386	0.652	1.069	0.870	0.770	0.941	1.186	0.221	0.208	0.150	0.179	0.921	0.772	6.155	0.120	0.029	0.055	0.127	0.069	0.194	0.128	0.593	0.028
8076	chr9	18389689	18405453	+	0	NA	Intergenic	Intergenic	-76508	NM_052866	92949	Hs.741483	NM_052866	ENSG00000178031	ADAMTSL1	ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN	ADAMTS like 1	protein-coding	nan	nan	0.986	1.651	4.242	2.315	2.832	0.840	0.081	0.815	0.465	3.760	1.450	0.055	0.071	0.170	0.133	0.371	1.159	4.755	4.944	2.985	2.679	0.058	0.078	0.274	0.499	1.813	1.806	0.416	0.201	0.090	0.142	3.985	4.711	0.144	0.373	3.794	1.747	0.145	0.141	1.102	0.856	2.832	3.760	0.154	1.190	0.013	0.126
5362	chr3	42854286	42873030	+	0	NA	intron (NM_001296, intron 2 of 2)	(TAAA)n|Simple_repeat|Simple_repeat	12694	NM_001296	1238	Hs.146346	NM_001296	ENSG00000144648	ACKR2	CCBP2|CCR10|CCR9|CMKBR9|D6|hD6	atypical chemokine receptor 2	protein-coding	0.806	nan	nan	0.308	0.203	0.069	0.594	0.746	0.221	0.243	0.206	0.364	1.939	0.035	0.122	0.218	0.151	0.242	0.605	1.782	2.042	0.457	0.120	0.181	0.145	1.141	1.448	0.664	1.580	0.956	0.868	0.162	0.229	2.056	3.070	0.261	0.681	0.401	0.288	1.166	0.113	0.937	0.092	0.594	0.364	0.036	0.315	0.058	0.214
4481	chr2	121624193	121659449	+	0	NA	intron (NM_005270, intron 1 of 12)	intron (NM_005270, intron 1 of 12)	86954	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding	1.353	nan	nan	0.063	0.179	0.100	2.175	0.172	0.064	0.058	0.085	0.085	1.081	0.037	0.075	0.548	0.562	0.313	0.354	1.229	1.403	0.152	0.102	0.606	0.625	0.510	0.732	2.720	2.277	0.901	0.935	0.270	0.365	0.149	0.121	0.364	0.658	0.591	0.397	2.601	0.452	0.054	0.066	2.175	0.085	0.643	0.023	0.112	0.179
1867	chr12	24607781	24664869	+	0	NA	intron (NM_001261414, intron 1 of 16)	intron (NM_001261414, intron 1 of 16)	79199	NM_152989	6660	Hs.434948	NM_006940	ENSG00000134532	SOX5	L-SOX5|L-SOX5B|L-SOX5F|LAMSHF	SRY-box 5	protein-coding	nan	nan	nan	0.234	0.928	0.442	0.161	0.052	0.031	0.126	0.160	0.319	0.335	2.277	0.164	0.319	0.227	0.231	0.418	0.481	0.626	0.161	0.084	0.400	0.370	0.207	0.340	0.277	0.343	0.362	0.151	0.195	0.325	0.509	0.722	0.704	1.581	0.449	0.375	0.019	0.094	0.094	0.123	0.161	0.319	0.008	0.038	0.109	0.174
4742	chr2	226321824	226336548	+	0	NA	intron (NM_020864, intron 2 of 5)	intron (NM_020864, intron 2 of 5)	63584	NM_020864	57624	Hs.224409	NM_020864	ENSG00000144460	NYAP2	KIAA1486	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	protein-coding	nan	0.864	0.719	0.255	4.122	2.276	0.254	0.150	0.194	0.333	0.270	0.557	nan	0.155	0.080	0.544	0.558	0.354	0.373	0.568	0.545	0.734	0.276	0.358	0.424	1.049	1.234	0.709	nan	0.555	0.353	0.172	0.202	1.274	2.099	0.164	nan	0.827	0.692	0.101	0.098	0.201	0.171	0.254	0.557	0.019	0.512	0.035	0.025
3969	chr19	12842894	12849454	+	0	NA	promoter-TSS (NM_024038)	promoter-TSS (NM_024038)	-585	NR_138095	79002	Hs.515155	NM_024038	ENSG00000123144	C19orf43	fSAP18	chromosome 19 open reading frame 43	protein-coding	6.834	3.904	4.942	4.934	5.483	2.789	4.031	2.144	0.407	1.940	1.116	4.872	3.209	2.988	0.112	5.787	5.538	6.874	10.200	7.200	7.867	11.923	8.361	10.937	12.073	4.900	6.021	8.113	11.665	10.513	9.420	3.757	4.929	5.911	7.936	11.566	10.446	4.235	2.329	4.540	2.168	1.194	1.338	4.031	4.872	1.479	2.805	1.078	3.111
4664	chr2	201725381	201730400	+	0	NA	intron (NR_027855, intron 1 of 11)	HY4|scRNA|scRNA	1394	NM_001162407	1195	Hs.433732	NM_004071	ENSG00000013441	CLK1	CLK|CLK/STY|STY	CDC like kinase 1	protein-coding	7.927	nan	6.671	7.187	7.067	3.969	4.822	3.073	0.342	3.057	1.942	6.476	11.635	3.361	0.134	6.799	7.097	8.456	12.044	10.639	9.338	7.583	5.586	24.509	25.956	4.910	6.121	7.578	13.163	11.118	14.536	6.352	12.419	4.861	5.335	11.707	10.255	3.093	1.924	5.050	3.781	0.569	3.259	4.822	6.476	1.678	2.993	2.886	3.618
7957	chr8	139913207	139927460	+	0	NA	intron (NM_152888, intron 1 of 64)	intron (NM_152888, intron 1 of 64)	5916	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding	nan	0.575	0.692	0.801	0.524	0.258	0.315	0.074	0.042	0.184	0.081	1.405	1.920	0.046	0.060	0.367	0.143	0.135	0.125	4.685	5.496	2.205	0.649	nan	0.147	0.199	0.236	0.800	0.984	0.406	0.182	0.147	0.176	0.548	0.458	0.178	0.281	0.836	0.684	0.086	0.179	0.076	1.457	0.315	1.405	0.116	1.457	0.011	0.052
2505	chr14	27050707	27076466	+	0	NA	intron (NM_006489, intron 2 of 3)	intron (NM_006489, intron 2 of 3)	3374	NM_006491	4857	Hs.31588	NM_002515	ENSG00000139910	NOVA1	Nova-1	NOVA alternative splicing regulator 1	protein-coding	nan	0.869	1.028	3.024	0.617	0.316	0.527	0.672	0.156	0.473	0.296	0.799	7.057	0.535	0.141	0.583	0.695	0.173	0.185	2.142	1.881	2.941	0.908	1.018	1.024	3.335	4.218	1.978	nan	4.130	4.124	0.531	1.010	0.263	0.256	0.443	0.879	0.937	0.630	4.824	1.171	0.076	0.587	0.527	0.799	0.219	1.332	0.357	0.228
2936	chr15	70373807	70393989	+	0	NA	intron (NM_001105192, intron 4 of 19)	Plat_L3|LINE|CR1	3226	NM_001282982	7090	Hs.287362	NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	transducin like enhancer of split 3	protein-coding	2.070	1.724	2.626	2.091	1.678	0.882	2.803	1.479	0.079	0.662	0.402	3.005	6.390	1.138	0.079	3.052	3.334	3.602	5.187	3.131	2.367	2.055	0.756	2.500	2.470	0.993	1.439	2.321	3.832	3.221	3.598	2.155	4.397	1.270	1.262	1.845	2.837	0.979	0.606	1.785	2.829	0.353	1.535	2.803	3.005	0.858	0.620	2.762	1.491
8364	chrX	6140718	6147841	+	0	NA	promoter-TSS (NR_136577)	promoter-TSS (NR_136577)	-120	NR_136577	105373156	Hs.21107	NR_136577		LOC105373156	-	uncharacterized LOC105373156	ncRNA	1.822	2.408	0.332	0.549	0.182	0.069	1.958	0.056	0.046	0.198	0.175	5.841	3.953	0.639	0.027	0.412	0.753	1.153	1.164	7.933	5.823	1.119	0.279	0.065	0.062	0.104	0.176	0.701	0.855	2.812	4.540	1.146	3.162	2.609	0.806	0.176	0.270	0.020	0.191	0.390	0.124	0.575	0.747	1.958	5.841	0.027	0.541	1.586	0.033
1289	chr11	6341979	6355774	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-7136	NM_145040	112464	Hs.434044	NM_145040	ENSG00000170955	PRKCDBP	CAVIN3|HSRBC|SRBC|cavin-3	protein kinase C delta binding protein	protein-coding	0.528	1.197	0.674	0.373	0.232	0.118	0.139	0.811	0.187	0.897	0.484	0.892	0.440	0.014	0.082	0.553	0.269	0.239	0.433	0.268	0.361	8.093	2.805	0.176	0.215	0.178	0.308	1.289	1.174	0.416	0.260	0.167	0.293	1.895	1.867	0.103	0.199	1.988	1.054	0.026	0.204	0.361	0.035	0.139	0.892	0.071	0.107	0.043	0.045
8280	chr9	130061723	130076208	+	0	NA	intron (NM_032293, intron 2 of 27)	AluY|SINE|Alu	42209	NM_032293	84253	Hs.29304	NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding	nan	1.058	0.993	0.327	0.379	0.176	0.131	0.342	0.146	0.075	0.098	0.373	0.983	0.045	0.074	0.251	0.175	0.256	0.472	0.552	0.741	nan	0.195	0.328	0.367	0.727	1.107	1.605	1.707	6.682	5.540	0.154	0.196	0.158	0.181	2.528	4.800	0.744	0.575	0.091	0.098	0.040	0.093	0.131	0.373	0.732	0.358	0.034	1.704
7159	chr7	11012679	11025313	+	0	NA	intron (NR_033436, intron 2 of 16)	intron (NR_033436, intron 2 of 16)	5497	NR_033435	9678	Hs.655688	NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding	nan	2.035	nan	1.887	2.628	1.581	1.934	0.812	0.155	0.470	0.230	2.884	3.602	1.371	0.208	nan	3.233	1.949	2.434	3.204	2.663	2.610	1.372	12.989	12.812	2.140	2.712	3.575	5.373	2.411	2.353	0.994	1.833	3.116	3.313	2.875	3.319	1.509	0.943	1.704	1.318	0.657	1.138	1.934	2.884	0.658	1.555	0.853	0.946
6113	chr4	190532736	190536285	+	0	NA	Intergenic	Intergenic	-46250	NR_121679	101928971	Hs.519164	NR_121679	ENSG00000250739	LINC01262	TCONS_l2_00021807	long intergenic non-protein coding RNA 1262	ncRNA	0.500	0.559	nan	0.147	0.168	0.236	0.072	0.063	0.114	0.045	0.070	0.203	0.171		0.074	2.718	1.968	10.615	11.658	0.306	0.310	0.003	0.018	1.838	1.802	0.106	0.173	0.071	0.112	0.290	0.111	1.359	1.875	0.059	0.086	0.071	0.116	0.286	0.170	0.015	0.050	0.054	0.023	0.072	0.203		0.058	0.363	0.034
8111	chr9	33792716	33820195	+	0	NA	Intergenic	L1MC1|LINE|L1	-10727	NM_017811	54926	Hs.643648	NM_017811	ENSG00000107341	UBE2R2	CDC34B|E2-CDC34B|UBC3B	ubiquitin conjugating enzyme E2 R2	protein-coding	1.668	nan	1.555	1.582	2.132	1.068	1.160	0.717	0.217	1.147	0.621	1.732	3.777	0.810	0.081	0.796	0.798	1.402	2.099	2.535	2.523	4.623	1.854	1.731	1.664	1.119	1.756	2.198	2.619	1.930	1.800	1.306	1.886	1.795	2.390	1.245	1.298	2.845	1.770	3.317	2.222	0.525	0.885	1.160	1.732	0.205	0.592	0.412	0.443
841	chr1	210110046	210118150	+	0	NA	intron (NM_001146264, intron 1 of 8)	L3|LINE|CR1	2579	NR_027459	255928	Hs.658866	NM_153262	ENSG00000143469	SYT14	SCAR11|sytXIV	synaptotagmin 14	protein-coding	1.403	2.440	0.935	0.727	2.230	1.643	2.055	0.367	0.059	1.259	0.505	2.693	nan	0.172	0.104	1.807	2.406	0.330	0.369	4.972	4.868	nan	1.151	0.368	0.400	4.801	nan	2.979	4.543	2.423	2.517	1.232	2.220	2.078	2.142	3.490	4.201	2.177	1.084	1.513	0.761	0.378	1.048	2.055	2.693	0.488	0.013	0.512	0.429
7869	chr8	107613660	107651933	+	0	NA	intron (NM_001198532, intron 2 of 15)	intron (NM_001198532, intron 2 of 15)	-37240	NM_181354	55074	Hs.127286	NM_018002	ENSG00000164830	OXR1	Nbla00307|TLDC3	oxidation resistance 1	protein-coding	1.068	nan	nan	0.835	0.339	0.201	0.137	0.227	0.114	0.049	0.084	0.529	2.799	0.062	0.096	0.951	0.575	6.639	5.702	0.450	0.536	nan	0.396	1.255	1.311	0.860	nan	6.469	nan	nan	0.227	0.250	0.530	0.104	0.137	0.430	nan	1.019	0.679	0.336	0.089	0.043	0.082	0.137	0.529	0.022	0.090	0.106	0.226
5548	chr3	133088815	133104191	+	0	NA	intron (NM_001282865, intron 2 of 3)	intron (NM_001282865, intron 2 of 3)	-22336	NM_003571	8419	Hs.659862	NM_003571	ENSG00000170819	BFSP2	CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN	beaded filament structural protein 2	protein-coding	0.986	nan	nan	0.132	0.635	0.251	0.369	0.321	0.137	0.194	0.125	0.327	0.299	0.014	0.089	1.089	1.059	9.372	5.063	0.809	0.827	1.164	0.447	1.985	2.181	0.645	1.204	0.222	0.377	nan	0.618	0.190	0.426	0.076	0.182	0.596	1.383	1.052	0.720	0.065	0.126	0.025	0.093	0.369	0.327	0.089	0.020	0.026	0.546
1751	chr11	134580805	134609020	+	0	NA	Intergenic	Intergenic	-260334	NR_135050	100507548	Hs.639995	NR_135050		LOC100507548	-	uncharacterized LOC100507548	ncRNA	0.375	nan	0.536	0.056	0.202	0.109	0.871	0.026	0.028	0.073	0.086	0.051	nan	0.061	0.111	0.676	1.106	0.146	0.160	0.234	0.265	0.163	0.103	0.110	0.094	0.165	0.275	0.292	0.342	0.433	0.383	0.883	1.024	0.070	0.091	0.064	0.123	0.241	0.338	6.392	0.316	0.027	0.045	0.871	0.051	0.031	0.025	0.323	0.013
7402	chr7	99148300	99161703	+	0	NA	Intergenic	L3b|LINE|CR1	-1044	NM_001085366	79027	Hs.599798	NM_024061	ENSG00000197343	ZNF655	VIK|VIK-1	zinc finger protein 655	protein-coding	nan	1.397	nan	1.996	3.032	1.542	2.805	1.914	0.214	2.071	0.979	2.046	3.826	3.041	0.185	3.332	3.269	4.829	6.818	4.789	5.197	4.518	2.901	9.438	10.412	2.640	3.627	2.121	5.028	4.789	4.283	4.441	6.587	2.851	4.339	3.835	nan	3.351	1.627	1.382	2.001	0.353	1.129	2.805	2.046	0.543	1.249	0.975	0.779
2121	chr12	105409436	105420965	+	0	NA	non-coding (NR_027752, exon 23 of 23)	non-coding (NR_027752, exon 23 of 23)	35102	NM_152318	121053	Hs.295563	NM_152318	ENSG00000151131	C12orf45	-	chromosome 12 open reading frame 45	protein-coding	0.885	1.034	nan	0.549	0.322	0.173	0.245	0.646	0.196	0.233	0.185	0.788	0.574	0.122	0.130	0.246	0.260	0.252	0.512	0.708	0.863	0.556	0.173	0.402	0.358	2.606	3.347	1.021	0.896	1.026	1.175	0.154	0.212	0.287	0.395	0.263	0.558	3.421	1.584	0.105	0.131	0.058	0.048	0.245	0.788	0.101	0.089	0.017	0.139
474	chr1	118392009	118407082	+	0	NA	Intergenic	Tigger14a|DNA|TcMar-Tigger	72757	NM_017686	54834	Hs.310809	NM_017686	ENSG00000196505	GDAP2	MACROD3	ganglioside induced differentiation associated protein 2	protein-coding	nan	0.806	0.837	0.157	0.208	0.134	0.126	0.219	0.128	0.094	0.076	0.079	0.470	0.087	0.146	0.378	0.267	0.195	0.287	0.208	nan	0.369	0.216	0.203	0.278	3.456	4.211	0.338	0.373	0.848	1.069	0.217	0.269	0.488	0.339	0.346	0.576	0.404	0.345	0.029	0.074	0.089	0.881	0.126	0.079	0.337	0.027	0.065	0.163
3563	chr17	74691968	74707561	+	0	NA	intron (NM_001008528, intron 1 of 3)	HY4|scRNA|scRNA	5915	NR_130926	439921	Hs.250723	NM_198530	ENSG00000182534	MXRA7	PS1TP1|TMAP1	matrix remodeling associated 7	protein-coding	1.837	1.240	1.147	0.592	1.428	0.719	1.794	0.501	0.103	0.216	0.185	1.328	1.985	0.564	0.104	1.847	2.843	0.830	1.537	3.554	2.905	1.185	0.407	0.724	0.675	nan	1.539	2.827	4.013	1.809	1.582	0.793	1.249	0.376	0.455	2.506	4.554	nan	0.578	0.756	3.651	0.053	0.180	1.794	1.328	0.764	0.860	0.486	1.780
8324	chr9	137297035	137306960	+	0	NA	intron (NM_001291921, intron 3 of 8)	intron (NM_001291921, intron 3 of 8)	3569	NM_001291921	6256	Hs.590886	NM_002957	ENSG00000186350	RXRA	NR2B1	retinoid X receptor alpha	protein-coding	nan	2.532	0.831	0.203	1.181	0.501	2.965	1.649	0.468	0.094	0.083	3.353	4.493	0.202	0.036	0.929	0.814	1.701	4.236	2.524	2.629	nan	0.135	1.449	1.365	0.596	0.999	2.974	4.548	1.232	1.131	0.673	0.727	1.728	2.561	0.350	0.223	1.708	0.793	3.638	1.534	0.334	0.207	2.965	3.353	0.940	2.783	0.270	0.074
7552	chr7	154626948	154636706	+	0	NA	intron (NM_001936, intron 16 of 25)	intron (NM_001936, intron 16 of 25)	-88400	NR_024477	100132707	Hs.586358	NR_024476	ENSG00000214106	PAXIP1-AS2	PAXIP1OS	PAXIP1 antisense RNA 2	ncRNA	0.439	0.493	nan	0.125	0.334	0.230	1.667	0.080	0.084	0.510	0.281	1.531	2.170	0.078	0.096	0.519	0.732	0.191	0.300	2.268	1.485	2.169	0.518	0.037	0.075	0.145	0.154	0.114	0.159	0.283	0.146	0.610	0.746	0.332	0.229	0.059	0.052	3.940	2.178	0.971	0.164	0.049	0.389	1.667	1.531	0.110	0.042	0.518	
6024	chr4	139636343	139659176	+	0	NA	Intergenic	Intergenic	286041	NR_133945	105377448	Hs.200280	NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA	nan	nan	0.937	0.275	0.393	0.223	0.178	0.172	0.035	0.110	0.068	0.257	0.641	0.024	0.063	0.208	0.107	0.158	0.221	0.421	0.492	1.388	0.402	0.104	0.132	1.043	1.148	0.242	0.305	0.829	0.717	0.119	0.255	0.760	0.597	0.766	nan	0.599	0.477	3.568	0.190	0.195	0.237	0.178	0.257	0.034	0.026	0.064	1.502
4058	chr19	39968497	39976362	+	0	NA	intron (NM_001001563, intron 1 of 10)	intron (NM_001001563, intron 1 of 10)	1377	NM_001001563	92609	Hs.590956	NM_001001563	ENSG00000105197	TIMM50	TIM50|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	3.116	2.598	3.687	4.146	1.530	0.989	1.528	0.651	0.102	0.839	0.406	1.581	5.916	1.405	0.141	2.018	1.792	2.679	3.730	2.949	3.327	3.729	1.550	6.508	6.987	1.766	2.892	3.095	4.308	nan	7.702	1.943	2.861	1.676	2.349	5.210	11.229	2.252	1.497	1.625	3.072	0.301	0.573	1.528	1.581	0.902	1.394	0.598	4.689
2953	chr15	74924303	74967763	+	0	NA	intron (NM_025083, intron 4 of 6)	intron (NM_025083, intron 4 of 6)	38698	NM_001130028	1198	Hs.511790	NM_001292	ENSG00000179335	CLK3	PHCLK3|PHCLK3/152	CDC like kinase 3	protein-coding	0.805	1.379	0.836	0.390	0.514	0.280	0.420	0.208	0.115	0.296	0.272	0.864	4.042	0.090	0.079	0.430	0.567	3.683	9.242	1.050	1.283	0.873	0.427	0.222	0.227	0.447	0.725	2.752	3.156	0.992	0.834	0.478	0.808	0.484	0.693	0.302	0.485	1.393	0.626	0.590	0.686	0.170	0.077	0.420	0.864	0.245	0.077	0.274	0.051
6947	chr6	125013257	125021150	+	0	NA	intron (NM_001300737, intron 5 of 7)	MER39|LTR|ERV1	-266488	NM_001286398	154214	Hs.12876	NM_152553	ENSG00000146373	RNF217	C6orf172|IBRDC1|OSTL|dJ84N20.1	ring finger protein 217	protein-coding	1.047	0.871	1.895	0.658	3.652	1.749	0.114	0.095	0.101	1.619	1.337	1.800	1.221	0.055	0.137	0.540	0.502	0.281	0.390	2.810	2.356	12.158	3.602	0.418	0.391	1.591	2.098	1.175	1.318	2.834	3.260	0.122	0.159	5.174	7.424	0.729	1.148	0.918	0.625	0.600	3.143	1.518	0.641	0.114	1.800	0.940	0.248	0.051	0.392
6085	chr4	181583758	181603118	+	0	NA	Intergenic	Intergenic	486864	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA	nan	0.652	nan	0.034	0.206	0.100	0.079	0.077	0.058	1.148	0.428	0.062	0.218	0.208	0.070	0.273	0.222	0.224	0.405	0.388	0.350	4.623	1.305	0.161	0.162	0.092	0.149	0.494	0.342	0.673	0.383	0.121	0.105	1.439	1.667	0.147	0.242	1.537	0.841	0.093	0.069	0.436	0.132	0.079	0.062		0.257	0.023	0.096
7549	chr7	153127425	153138448	+	0	NA	Intergenic	L1MC4a|LINE|L1	-23617	NR_125776	103724390	Hs.614280	NR_125776	ENSG00000234722	LINC01287	TCONS_l2_00027522	long intergenic non-protein coding RNA 1287	ncRNA	0.518	0.515	nan	0.040	0.342	0.204	1.226	0.061	0.145	0.242	0.096	0.109	0.226	0.059	0.151	0.854	0.832	0.364	0.260	0.473	0.554	6.594	2.527	0.071	0.100	0.139	0.337	0.101	0.126	0.251	0.134	0.093	0.198	0.075	0.123	0.113	0.255	0.596	0.687	0.012	0.032	0.025	0.028	1.226	0.109	0.035	0.027	0.063	0.045
6715	chr6	33171556	33177676	+	0	NA	promoter-TSS (NR_029633)	promoter-TSS (NR_029633)	-996	NR_029633	407002		NR_029633	ENSG00000199036	MIR219A1	MIR219-1|MIRN219-1|MRI219-1|hsa-mir-219a-1|mir-219|mir-219a-1	microRNA 219a-1	ncRNA	nan	2.635	nan	2.518	2.670	1.021	9.503	2.120	0.316	1.558	0.659	5.443	5.491	3.248	0.132	3.071	5.006	3.993	nan	nan	4.186	4.122	1.539	6.904	7.650	2.542	3.411	4.573	6.208	4.456	4.640	1.519	2.970	3.328	3.107	2.443	4.147	2.759	1.270	2.070	2.437	0.671	2.807	9.503	5.443	1.302	2.840	1.303	1.394
3489	chr17	59429275	59445882	+	0	NA	intron (NM_001330413, intron 23 of 25)	AluSx|SINE|Alu	7487	NR_136397	101927855	Hs.662123	NR_136397	ENSG00000267131	LOC101927855	-	uncharacterized LOC101927855	ncRNA	1.135	0.836	0.835	0.238	0.467	0.241	0.771	0.307	0.194	0.197	0.158	0.223	0.344	0.052	0.159	0.461	0.409	0.277	0.559	0.454	0.457	4.572	1.292	nan	0.469	0.324	0.539	nan	nan	1.218	0.974	0.309	0.346	2.637	3.416	0.584	1.133	0.807	0.488	0.054	0.795	0.613	0.904	0.771	0.223	0.345	0.117	0.107	0.195
7910	chr8	124726099	124741096	+	0	NA	intron (NM_004306, intron 1 of 10)	intron (NM_004306, intron 1 of 10)	16069	NM_004306	312	Hs.181107	NM_004306	ENSG00000104537	ANXA13	ANX13|ISA	annexin A13	protein-coding	nan	nan	nan	1.086	0.507	0.235	0.217	0.225	0.032	0.052	0.069	0.263	nan	0.022	0.071	0.595	1.182	0.357	0.376	0.707	0.782	1.311	0.525	nan	nan	0.232	0.420	2.453	2.376	0.416	0.327	1.057	1.720	0.640	0.596	0.252	0.385	1.287	0.875	0.941	0.305	0.118	0.058	0.217	0.263	0.180	0.614	1.352	0.165
5488	chr3	116031238	116050972	+	0	NA	intron (NM_002338, intron 1 of 6)	intron (NM_002338, intron 1 of 6)	-37766	NR_109998	101926903	Hs.26479	NR_109998	ENSG00000240922	LSAMP-AS1	-	LSAMP antisense RNA 1	ncRNA	1.204	nan	0.679	0.149	0.624	0.227	0.187	0.095	0.170	0.410	0.331	0.152	0.153	0.198	0.083	0.344	0.248	0.355	0.347	0.347	nan	0.889	0.343	0.284	0.290	nan	3.987	0.206	0.194	1.162	0.794	0.133	0.164	0.605	0.644	0.198	0.338	0.602	0.536	0.061	0.072	0.141	0.124	0.187	0.152	0.230	0.102	0.060	0.101
4106	chr19	47103228	47108195	+	0	NA	intron (NM_001329922, intron 1 of 5)	intron (NM_001329922, intron 1 of 5)	382	NM_001329922	808	Hs.515487	NM_005184	ENSG00000160014	CALM3	CaM|CaMIII|HEL-S-72|PHKD|PHKD3	calmodulin 3	protein-coding	5.229	3.722	4.205	4.060	6.184	2.942	4.778	2.355	0.194	1.418	0.972	5.542	8.180	5.128	0.128	7.197	7.968	6.745	8.767	10.342	10.675	9.481	6.671	15.500	16.210	5.023	6.179	7.359	10.553	6.977	8.372	7.554	11.396	5.930	5.316	7.270	6.670	4.113	2.520	3.481	6.628	1.610	1.854	4.778	5.542	1.050	2.738	3.314	2.322
6069	chr4	167008438	167019707	+	0	NA	intron (NM_012464, intron 19 of 20)	MIR3|SINE|MIR	219662	NM_001204760	7092	Hs.106513	NM_012464	ENSG00000038295	TLL1	ASD6|TLL	tolloid like 1	protein-coding	nan	nan	nan	0.086	0.376	0.113	0.126	0.187	0.057	0.292	0.258	0.201	0.203	0.030	0.047	0.207	0.167	10.267	12.997	0.136	0.217	1.044	0.406	0.272	0.298	0.257	0.380	0.414	0.353	0.300	0.134	0.155	0.281	0.371	0.365	0.182	0.252	0.820	0.348	0.020	0.047	0.060	0.064	0.126	0.201	0.018	0.045	0.051	0.076
4176	chr2	2641645	2671458	+	0	NA	Intergenic	Intergenic	-321466	NM_015025	23040	Hs.434418	NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding	0.460	0.612	1.149	0.470	0.833	0.448	0.437	0.035	0.059	0.590	0.256	2.266	2.747	0.040	0.066	0.433	0.689	0.247	0.231	2.490	2.609	1.339	0.432	0.358	0.366	0.427	0.785	2.909	2.628	1.598	1.680	0.287	0.349	0.284	0.197	0.152	0.225	1.329	0.864	2.477	1.298	0.039	0.059	0.437	2.266	0.572	2.363	0.047	0.025
3628	chr17_gl000204_random	51539	59297	+	0	NA	NA	CpG	NA	NA									nan	0.764	nan	0.092	0.273	0.104	0.478	0.112	0.082	0.061	0.022	0.015	1.758	0.070	0.076	0.345	0.132	0.054	0.119	nan	nan	0.093	0.032	0.098	0.086	1.834	2.044	0.172	0.186	nan	nan	0.160	0.196	0.054	0.044	0.302	0.360	0.271	0.262	0.591	0.809		0.010	0.478	0.015	0.872	0.040	0.039	0.259
7262	chr7	41022409	41029384	+	0	NA	Intergenic	Intergenic	-6359	NR_110831	101928744	Hs.639767	NR_110831	ENSG00000232458	LINC01450	-	long intergenic non-protein coding RNA 1450	ncRNA	0.849	0.972	nan	0.050	0.261	0.115	0.111	0.571	0.093	0.091	0.114	0.069	0.195	0.072	0.106	0.329	0.192	0.500	1.153	0.215	0.289	0.136	0.141	0.407	0.466	0.162	0.363	0.253	0.212	0.252	0.190	0.376	0.392	0.215	0.600	0.213	0.492	0.161	0.250	0.016	0.076	0.108	0.043	0.111	0.069	0.042	4.725	0.225	0.106
7557	chr7	155246692	155266245	+	0	NA	3' UTR (NM_001427, exon 2 of 2)	3' UTR (NM_001427, exon 2 of 2)	5644	NM_001427	2020	Hs.134989	NM_001427	ENSG00000164778	EN2	-	engrailed homeobox 2	protein-coding	0.462	0.454	nan	0.127	0.189	0.149	1.050	0.077	0.057	0.135	0.143	0.122	0.557	1.140	0.099	4.385	4.525	1.988	1.886	1.187	1.002	0.189	0.061	0.110	0.102	0.141	0.222	0.128	0.155	0.361	0.239	4.090	7.321	0.097	0.131	0.063	0.161	0.452	0.457	1.329	0.327	0.005	0.057	1.050	0.122	0.229	0.015	3.226	0.025
5632	chr3	164246359	164258807	+	0	NA	Intergenic	Intergenic	296685	NR_126405	104355289	Hs.574909	NR_126405	ENSG00000241767	LINC01324	-	long intergenic non-protein coding RNA 1324	ncRNA	1.081	1.078	1.179	0.546	0.587	0.298	0.082	0.228	0.209	0.666	0.461	0.857	0.155	0.026	0.080	0.689	0.500	0.477	0.318	0.494	0.653	0.707	0.367	0.245	0.288	4.135	4.477	nan	0.845	nan	0.916	0.070	0.261	0.106	0.100	0.472	1.068	1.155	0.430	0.022	0.041	0.008	0.013	0.082	0.857	0.305	0.154	0.031	0.090
2418	chr13	103091267	103096934	+	0	NA	Intergenic	Intergenic	-39322	NM_001321949	2259	Hs.508616	NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding	0.940	0.936	0.849	0.446	0.252	0.169	0.473	0.013	0.098	0.083	0.055	0.351	18.637	0.019	0.139	0.501	0.350	0.301	0.560	2.050	1.690	0.490	0.064	0.085	0.135	1.512	nan	0.231	0.321	0.857	0.788	0.126	0.264	3.427	3.152	0.509	nan	0.269	0.246	2.563	0.296	0.420	1.105	0.473	0.351	0.224	0.232	0.054	0.132
305	chr1	53574159	53614280	+	0	NA	intron (NM_001287596, intron 2 of 3)	intron (NM_001287596, intron 2 of 3)	14085	NM_001287596	6512	Hs.104637	NM_006671	ENSG00000162383	SLC1A7	AAAT|EAAT5	solute carrier family 1 member 7	protein-coding	1.886	0.858	1.790	0.192	0.263	0.115	0.389	0.821	0.148	0.267	0.158	0.182	0.403	0.077	0.109	0.384	0.401	0.283	0.651	1.233	1.368	0.946	0.365	0.634	0.747	0.778	1.247	0.451	0.655	4.532	4.145	0.292	0.286	0.300	0.243	2.091	nan	0.900	0.651	0.137	0.132	0.066	0.144	0.389	0.182	0.575	0.389	0.072	2.265
928	chr1	233835518	233858884	+	0	NA	Intergenic	Intergenic	87303	NR_039625	100616390		NR_039625	ENSG00000265744	MIR4427	-	microRNA 4427	ncRNA	1.222	2.896	2.339	0.433	0.605	0.356	1.657	0.112	0.076	0.483	0.489	0.057	0.478	0.066	0.085	0.478	0.434	0.424	0.816	0.716	0.787	nan	0.083	0.141	0.127	0.497	0.795	nan	5.698	0.949	0.701	0.064	0.097	0.879	0.868	0.385	0.901	nan	1.223	1.668	0.164	0.163	0.153	1.657	0.057	0.096	0.261	0.009	0.183
7274	chr7	47567413	47651778	+	0	NA	intron (NM_022748, intron 1 of 30)	AluSq2|SINE|Alu	12147	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding	1.381	1.088	nan	0.409	0.241	0.099	0.357	1.000	0.297	0.462	0.190	0.857	0.449	5.845	0.294	0.447	0.370	1.619	7.177	0.766	0.856	1.118	0.329	0.224	0.197	0.135	0.281	0.785	1.108	0.389	0.265	0.154	0.209	0.653	0.617	0.163	0.227	0.950	0.687	0.015	0.053	0.137	0.040	0.357	0.857	0.141	0.448	0.051	0.042
1644	chr11	112689845	112696157	+	0	NA	Intergenic	MIRc|SINE|MIR	-138968	NM_181351	4684	Hs.503878	NM_000615	ENSG00000149294	NCAM1	CD56|MSK39|NCAM	neural cell adhesion molecule 1	protein-coding	0.721	0.830	0.777	0.175	0.255	0.153	0.280	0.036		0.224	0.053	0.113	0.315	0.069	0.121	7.453	nan	1.675	0.426	0.428	0.642	0.836	0.219	2.439	2.699	0.726	nan	0.580	0.624	1.823	1.547	1.539	4.152	0.413	0.530	1.544	4.449	0.691	0.510	0.098	0.141	0.211	0.610	0.280	0.113	0.047	0.064	3.742	2.065
4560	chr2	160337603	160355875	+	0	NA	intron (NM_001329857, intron 2 of 36)	intron (NM_001329857, intron 2 of 36)	-125066	NR_110588	643072	Hs.632541	NR_110587		LOC643072	-	uncharacterized LOC643072	ncRNA	0.941	0.936	nan	0.449	4.104	2.371	0.077	0.167	0.124	0.807	0.547	0.774	0.222	0.047	0.104	0.293	0.248	0.296	0.479	0.498	0.759	1.068	0.439	0.272	0.284	0.370	0.557	1.085	1.150	0.340	0.176	0.174	0.257	0.439	0.611	0.351	0.733	0.224	0.207	0.041	0.078	0.088	0.200	0.077	0.774	0.048	0.033	0.082	0.169
4276	chr2	28657846	28661804	+	0	NA	Intergenic	Intergenic	-42286	NR_103831	403150	Hs.562970	NR_103831	ENSG00000229951	FLJ31356	-	uncharacterized protein FLJ31356	ncRNA	2.176	3.588	1.753	2.510	0.195	0.040	0.258	0.095	0.161	0.146	0.126	0.153	8.749	0.060	0.115	0.348	0.610	0.897	4.414	0.497	0.350	0.958	0.414	0.479	0.513	0.389	0.852	3.006	nan	0.640	0.569	0.352	0.799	0.499	0.335	0.236	0.325	1.225	0.826	2.054	0.520	0.024	0.160	0.258	0.153	3.538	2.963	0.327	0.093
4815	chr20	3775480	3802736	+	0	NA	promoter-TSS (NR_109859)	promoter-TSS (NR_109859)	-33	NR_109859	101929125	Hs.744106	NR_109859	ENSG00000275491	LINC01730	-	long intergenic non-protein coding RNA 1730	ncRNA	3.068	5.413	4.948	3.104	5.314	2.651	2.628	2.638	0.514	1.453	0.753	3.170	9.568	0.890	0.078	4.052	6.673	2.346	6.025	5.191	4.841	4.839	1.530	3.844	4.255	2.702	3.468	7.060	7.656	2.558	2.355	2.011	3.629	3.929	4.205	2.022	2.566	3.076	1.464	3.739	4.442	0.888	1.576	2.628	3.170	1.090	3.070	2.006	0.924
4076	chr19	42230813	42307256	+	0	NA	intron (NM_002483, intron 4 of 5)	MIRb|SINE|MIR	9606	NM_002483	4680	Hs.466814	NM_002483	ENSG00000086548	CEACAM6	CD66c|CEAL|NCA	carcinoembryonic antigen related cell adhesion molecule 6	protein-coding	0.855	2.618	0.723	1.868	5.089	2.647	0.103	0.058	0.082	0.425	0.198	2.270	4.124	0.052	0.121	0.245	0.149	0.097	0.129	0.302	0.368	1.801	0.477	0.222	0.217	0.211	0.378	4.460	4.640	0.407	0.143	0.157	0.222	2.308	2.555	0.189	0.329	3.389	1.667	5.654	2.359	0.757	0.034	0.103	2.270	0.037	0.258	0.048	0.067
281	chr1	44808554	44822194	+	0	NA	intron (NM_001301699, intron 1 of 7)	intron (NM_001301699, intron 1 of 7)	5577	NM_001301698	79033	Hs.731413	NM_024066	ENSG00000117419	ERI3	PINT1|PRNPIP	ERI1 exoribonuclease family member 3	protein-coding	nan	1.096	nan	0.737	0.652	0.305	0.867	0.816	0.178	0.529	0.496	0.473	1.494	0.311	0.121	0.998	0.889	0.829	1.519	2.082	2.482	1.428	0.623	1.506	1.505	1.100	nan	nan	6.725	1.193	1.128	1.221	nan	0.581	0.594	1.409	2.099	1.321	0.799	0.315	0.617	0.159	0.399	0.867	0.473	0.263	0.341	0.398	0.547
3832	chr18	55251586	55263097	+	0	NA	Intergenic	L2a|LINE|L2	-3372	NM_000140	2235	Hs.365365	NM_000140	ENSG00000066926	FECH	EPP|FCE	ferrochelatase	protein-coding	nan	1.170	1.626	0.929	0.708	0.445	1.879	0.284	0.042	0.352	0.149	1.279	1.628	0.669	0.051	1.185	1.498	1.444	2.709	2.230	2.530	6.532	1.413	6.315	6.489	0.683	0.949	1.352	2.267	1.254	1.142	0.776	1.193	1.388	2.258	0.841	0.977	nan	1.812	0.276	0.418	0.175	0.748	1.879	1.279	0.178	0.486	0.243	0.227
3412	chr17	41320902	41324930	+	0	NA	promoter-TSS (NR_110868)	promoter-TSS (NR_110868)	-71	NM_005899	4077	Hs.277721	NM_005899	ENSG00000188554	NBR1	1A1-3B|IAI3B|M17S2|MIG19	NBR1, autophagy cargo receptor	protein-coding	5.169	5.542	3.299	9.050	8.812	4.445	2.582	4.840	0.481	4.359	1.969	4.347	11.906	3.586	0.183	7.513	9.402	7.118	10.798	10.912	nan	12.256	6.740	25.923	28.169	4.307	4.986	10.620	nan	12.184	12.854	4.765	4.953	9.762	10.466	9.179	11.186	4.539	2.578	4.328	6.812	1.139	3.249	2.582	4.347	1.898	3.415	2.695	3.320
4928	chr20	32234454	32249701	+	0	NA	Intergenic	Intergenic	-8015	NM_080825	128864	Hs.324104	NM_080825	ENSG00000149609	C20orf144	dJ63M2.6	chromosome 20 open reading frame 144	protein-coding	1.460	3.338	5.258	3.173	5.312	2.711	0.252	1.034	0.254	1.008	0.441	6.877	4.803	0.121	0.075	3.572	5.017	0.968	0.695	4.990	nan	3.560	0.921	2.266	2.452	1.128	1.777	8.340	7.799	2.135	1.919	1.650	2.224	0.760	0.968	0.658	nan	1.084	0.615	1.841	2.375	0.144	0.632	0.252	6.877	0.165	0.453	0.498	0.369
7382	chr7	94247534	94265841	+	0	NA	intron (NM_001346720, intron 4 of 11)	intron (NM_001346720, intron 4 of 11)	28834	NM_001099400	8910	Hs.371199	NM_003919	ENSG00000127990	SGCE	DYT11|ESG|epsilon-SG	sarcoglycan epsilon	protein-coding	nan	0.868	nan	0.456	0.557	0.319	0.404	0.877	0.107	1.336	0.615	0.692	0.391	0.112	0.190	0.347	0.286	0.224	0.516	1.463	1.809	0.761	0.508	0.331	0.362	3.237	3.852	0.711	0.926	0.806	0.573	0.229	0.344	0.862	1.362	0.289	nan	2.471	1.625	0.051	0.214	0.178	0.105	0.404	0.692	0.064	0.144	0.081	0.151
8376	chrX	24162909	24173417	+	0	NA	promoter-TSS (NR_046657)	intron (NM_001178085, intron 1 of 10)	309	NM_003410	7543	Hs.336681	NM_003410	ENSG00000005889	ZFX	ZNF926	zinc finger protein, X-linked	protein-coding	2.914	2.480	2.233	1.875	1.934	1.116	1.875	3.414	0.390	1.501	0.846	2.321	3.574	2.018	0.074	1.426	1.655	6.272	10.154	4.642	5.579	2.382	2.081	10.780	10.879	1.516	1.987	3.577	6.692	5.182	4.769	3.276	5.330	2.200	1.911	5.411	4.050	1.221	0.756	0.743	2.167	0.473	1.723	1.875	2.321	0.415	1.000	1.093	1.734
6485	chr5	143603003	143618738	+	0	NA	intron (NM_020768, intron 3 of 3)	L2a|LINE|L2	60433	NM_020768	57528	Hs.7093	NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding	nan	0.866	0.895	0.391	0.249	0.081	0.057	0.063	0.031	0.439	0.293	0.114	0.576	0.062	0.090	0.188	0.106	0.361	0.223	0.211	0.334	1.102	0.250	0.083	0.112	3.479	3.803	0.801	0.629	0.523	0.429	0.060	0.241	0.793	1.251	0.448	1.194	0.446	0.414	0.010	0.085	0.188	0.035	0.057	0.114	0.099	0.381	0.038	0.305
5150	chr21	44559001	44586547	+	0	NA	Intergenic	L2a|LINE|L2	-11572	NR_133678	106780825		NR_133678		LOC106780825	-	FOXM1-regulated, gastric cancer associated-like	ncRNA	nan	1.243	0.991	0.230	0.625	0.340	0.436	0.157	0.090	0.091	0.103	0.300	0.719	0.075	0.069	1.280	1.426	7.102	9.797	0.723	0.734	nan	0.265	0.605	0.748	0.497	nan	0.925	1.271	0.817	0.665	0.925	1.194	0.279	0.285	0.506	0.704	1.298	0.879	0.500	0.335	0.038	0.081	0.436	0.300	0.130	0.290	0.461	0.439
748	chr1	192325183	192331318	+	0	NA	intron (NM_001039152, intron 4 of 4)	intron (NM_001039152, intron 4 of 4)	42128	NM_001039152	431704	Hs.558673	NM_001039152	ENSG00000253148	RGS21	-	regulator of G-protein signaling 21	protein-coding	0.995	nan	0.867	0.058	0.246	0.107	0.163	0.131	0.112	0.179	0.314	0.058	0.266	0.033	0.150	1.408	0.463	9.443	2.337	0.358	0.436	0.217	0.088	1.869	1.847	0.380	nan	0.317	0.324	0.367	0.192	0.220	0.182	0.079	0.131	0.354	0.535	0.280	0.332	0.018	0.073	0.046		0.163	0.058	0.058	0.016	0.049	0.060
1655	chr11	113642587	113654309	+	0	NA	Intergenic	LTR5A|LTR|ERVK	-2070	NM_001101389	644672	Hs.705360	NM_001101389	ENSG00000228607	CLDN25	-	claudin 25	protein-coding	1.108	1.197	1.173	0.747	0.875	0.564	0.612	0.300	0.137	0.807	0.349	0.592	2.176	0.633	0.091	6.039	nan	2.253	3.142	1.642	1.533	1.853	0.666	1.270	1.307	1.360	nan	1.435	1.676	1.180	1.173	1.757	2.859	0.609	0.769	0.698	1.172	1.835	1.222	0.505	0.303	0.089	0.249	0.612	0.592	0.314	0.347	1.152	0.210
5077	chr21	24939092	24956593	+	0	NA	Intergenic	AluJb|SINE|Alu	-190686	NR_040254	266917	Hs.145622	NR_040254	ENSG00000228592	D21S2088E	-	D21S2088E	ncRNA	0.757	0.791	0.707	0.066	0.339	0.211	0.459	0.060	0.092	0.144	0.065	0.065	0.328	0.020	0.077	0.411	0.245	0.176	0.323	0.268	0.362	0.447	0.240	0.095	0.085	0.921	1.171	0.210	0.224	0.761	0.277	0.133	0.159	2.173	1.869	0.375	nan	6.671	3.040	0.008	0.036	0.474	0.204	0.459	0.065	0.022	0.098	0.045	0.100
1943	chr12	52256886	52290144	+	0	NA	Intergenic	AluJo|SINE|Alu	-8278	NM_001304460	341405	Hs.433492	NM_182608	ENSG00000167612	ANKRD33	C12orf7|PANKY	ankyrin repeat domain 33	protein-coding	nan	0.911	1.433	0.243	0.355	0.224	0.258	0.144	0.097	0.089	0.191	0.284	0.450	0.084	0.077	nan	1.593	0.261	0.395	1.101	nan	2.790	0.765	0.301	0.358	0.287	nan	0.822	nan	1.376	1.404	0.658	0.673	0.867	0.918	1.319	3.624	0.678	0.582	0.186	0.181	0.257	0.178	0.258	0.284	0.229	0.298	0.217	1.049
6905	chr6	111194607	111201044	+	0	NA	intron (NM_001287216, intron 1 of 4)	intron (NM_001287216, intron 1 of 4)	1838	NM_001634	262	Hs.159118	NM_001634	ENSG00000123505	AMD1	ADOMETDC|AMD|SAMDC	adenosylmethionine decarboxylase 1	protein-coding	7.236	3.361	nan	6.024	3.771	1.961	5.190	3.346	0.125	1.920	1.052	5.492	7.916	3.893	0.155	7.185	7.611	6.863	8.746	8.466	nan	9.204	3.210	16.639	16.641	2.986	nan	2.729	4.270	10.026	11.980	3.501	7.546	4.332	3.943	3.778	nan	2.133	1.638	3.958	3.643	0.856	2.717	5.190	5.492	1.584	2.779	1.830	1.458
3779	chr18	45215197	45230487	+	0	NA	Intergenic	Intergenic	234128	NM_005901	4087	Hs.12253	NM_005901	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding	nan	0.868	1.070	0.087	0.296	0.180	0.635	0.069	0.053	0.052	0.076	0.110	0.319	0.021	0.093	0.382	0.189	0.148	0.240	0.535	0.525	0.824	0.279	0.116	0.156	0.083	0.185	0.187	0.170	0.318	0.144	0.156	0.091	0.127	0.239	0.755	nan	0.496	0.748	0.018	0.052	0.037	0.036	0.635	0.110	0.007	0.013	0.013	3.545
5724	chr3	181552851	181640068	+	0	NA	Intergenic	Intergenic	-73693	NR_104146	100996490	Hs.606987	NR_104146	ENSG00000242512	LINC01206	-	long intergenic non-protein coding RNA 1206	ncRNA	0.965	1.351	0.793	0.336	1.194	0.620	0.189	0.130	0.150	0.429	0.355	0.312	0.662	2.618	0.140	0.298	0.218	0.243	0.440	0.534	0.657	5.202	1.694	0.115	0.131	0.743	1.102	0.705	0.735	0.631	0.320	0.169	0.235	0.847	0.952	0.127	0.226	1.115	0.715	0.209	0.261	0.283	0.446	0.189	0.312	0.120	0.106	0.063	0.047
3747	chr18	38821665	38829573	+	0	NA	Intergenic	L1MA4|LINE|L1	274942	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA	nan	0.893	0.707	0.134	7.337	3.337	0.355	0.086		0.080	0.209	0.076	0.236		0.116	0.318	0.238	0.179	0.241	0.323	0.443	3.850	0.878	0.122	0.148	0.250	0.451	nan	0.331	0.317	0.185	0.092	0.150	0.135	0.243	0.251	0.685	0.947	0.901	0.028	0.225	0.012	0.442	0.355	0.076	0.002	0.025	0.096	
6060	chr4	159850811	159893351	+	0	NA	intron (NM_152543, intron 3 of 4)	intron (NM_152543, intron 3 of 4)	84252	NM_152543	152940	Hs.415576	NM_152543	ENSG00000164123	C4orf45	-	chromosome 4 open reading frame 45	protein-coding	nan	1.373	0.514	0.140	0.419	0.212	0.235	0.172	0.104	0.092	0.067	0.181	0.246	4.567	0.181	0.235	0.138	0.237	0.330	0.217	0.251	0.283	0.159	0.127	0.144	0.383	0.542	0.305	0.317	0.393	0.201	0.114	0.195	0.080	0.107	0.212	0.415	0.402	0.367	0.015	0.046	0.013	0.121	0.235	0.181	0.011	0.043	0.051	0.079
7669	chr8	49819643	49838543	+	0	NA	Intergenic	Intergenic	4906	NM_003068	6591	Hs.360174	NM_003068	ENSG00000019549	SNAI2	SLUG|SLUGH|SLUGH1|SNAIL2|WS2D	snail family transcriptional repressor 2	protein-coding	1.721	nan	2.109	0.085	0.193	0.084	0.413	0.803	0.111	0.829	0.400	0.044	1.319	0.027	0.134	0.411	0.334	0.706	1.555	1.535	1.171	2.378	0.485	0.432	0.446	0.500	0.720	0.109	0.113	0.816	0.603	0.143	0.187	2.574	3.757	0.370	0.605	2.211	1.465	0.003	0.137	0.510	0.117	0.413	0.044	0.221	2.545	0.031	0.248
5369	chr3	50629414	50641137	+	0	NA	Intergenic	AluSq2|SINE|Alu	13987	NM_013324	1154	Hs.655334	NM_013324	ENSG00000114737	CISH	BACTS2|CIS|CIS-1|G18|SOCS	cytokine inducible SH2 containing protein	protein-coding	1.034	2.268	nan	0.404	0.628	0.219	0.218	1.197	0.287	0.242	0.148	0.367	4.878	0.085	0.093	0.429	0.824	0.449	0.939	0.764	0.782	0.295	0.109	0.877	0.922	0.976	1.377	3.513	3.949	nan	1.300	1.168	1.739	0.208	0.167	0.312	0.647	1.105	0.604	1.471	1.697	0.049	0.048	0.218	0.367	0.540	2.959	1.493	0.167
1018	chr10	12083592	12085979	+	0	NA	promoter-TSS (NM_015542)	promoter-TSS (NM_015542)	55	NM_015542	26019	Hs.370689	NM_015542	ENSG00000151461	UPF2	HUPF2|RENT2|smg-3	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	nan	4.329	5.506	7.490	7.458	3.331	7.274	9.851	0.738	2.977	0.995	7.268	12.435	5.730	0.179	12.037	11.409	11.499	15.730	9.013	11.306	16.264	12.474	13.112	13.852	6.405	7.356	10.478	17.905	8.117	7.477	8.066	10.208	5.389	6.952	7.906	7.453	3.767	1.634	3.057	4.488	1.446	2.427	7.274	7.268	1.646	3.274	2.949	3.270
1125	chr10	63591947	63603869	+	0	NA	Intergenic	Intergenic	-63105	NM_032199	84159	Hs.535297	NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding	0.670	nan	1.308	0.089	0.352	0.147	0.043	2.576	0.121	0.074	0.096	0.622	0.360	4.580	0.138	0.456	0.284	6.688	10.744	0.469	0.529	0.339	0.117	0.831	0.847	0.560	0.747	0.566	0.455	0.308	0.161	0.159	0.189	0.575	0.760	0.294	nan	0.791	0.508	0.019	0.044	0.119	0.040	0.043	0.622	0.033	0.068	0.034	0.083
741	chr1	187794695	187849686	+	0	NA	Intergenic	Arthur1|DNA|hAT-Tip100	409430	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA	nan	nan	1.073	0.293	0.320	0.163	1.099	0.138	0.108	0.210	0.215	0.597	0.763	0.043	0.119	0.497	0.267	4.002	4.227	1.358	nan	1.267	0.403	nan	0.543	1.298	1.632	0.833	0.744	0.521	0.349	0.265	0.421	1.118	1.251	0.672	nan	1.042	0.586	0.428	0.784	0.134	0.252	1.099	0.597	0.141	0.114	0.090	0.249
2806	chr14	106156429	106169359	+	0	NA	Intergenic	Intergenic	-23750	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ELK2A, member of ETS oncogene family, pseudogene	pseudo	3.199	1.578	2.368	0.096	0.282	0.099	0.884	0.076	0.038	0.122	0.117	0.108	0.430	0.134	0.091	1.343	1.171	0.227	0.291	0.409	0.430	0.489	0.136	0.138	0.167	0.569	0.952	0.201	0.189	2.206	2.519	1.192	1.647	1.457	1.807	0.098	0.140	0.134	0.116	15.830	0.076	0.728	0.056	0.884	0.108	2.971	0.219	0.605	0.009
7922	chr8	127556554	127577931	+	0	NA	3' UTR (NM_174911, exon 2 of 2)	3' UTR (NM_174911, exon 2 of 2)	3469	NM_174911	157638	Hs.741352	NM_174911	ENSG00000168672	FAM84B	BCMP101|NSE2	family with sequence similarity 84 member B	protein-coding	nan	nan	nan	3.006	1.355	0.728	0.515	0.218	0.133	0.617	0.331	3.760	nan	0.238	0.074	0.482	0.675	2.100	4.686	5.885	5.901	3.143	1.316	nan	nan	9.249	12.886	2.032	2.819	0.756	0.971	0.659	1.086	1.306	0.923	0.745	1.332	1.133	0.889	0.346	1.121	0.424	0.268	0.515	3.760	0.014	0.357	0.338	0.464
7439	chr7	114046090	114073649	+	0	NA	intron (NM_148898, intron 1 of 17)	intron (NM_148898, intron 1 of 17)	4817	NM_014491	93986	Hs.282787	NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding	nan	0.862	2.680	0.164	1.326	0.728	0.506	0.292	0.082	1.133	0.807	3.061	3.425	0.157	0.142	3.033	2.508	1.735	1.548	0.354	0.523	3.538	3.739	0.275	0.280	3.218	3.781	0.736	1.097	1.666	1.319	0.337	0.563	3.625	4.289	1.237	1.852	0.848	0.649	0.068	3.095	0.929	0.610	0.506	3.061	0.141	0.493	0.061	0.625
3032	chr16	3054048	3064673	+	0	NA	Intergenic	Intergenic	-3097	NM_020982	9080	Hs.296949	NM_020982	ENSG00000213937	CLDN9	-	claudin 9	protein-coding	0.951	nan	1.166	0.824	4.070	2.452	1.300	0.064	0.106	0.843	0.518	4.119	2.527	0.866	0.083	0.920	1.749	0.245	0.438	5.227	5.582	nan	0.484	0.419	0.424	0.431	nan	1.827	2.883	0.770	0.504	0.417	0.709	1.258	0.846	0.433	0.898	1.634	1.003	3.735	6.722	0.285	2.509	1.300	4.119	0.941	0.383	0.354	0.128
3880	chr18	66909717	66916178	+	0	NA	Intergenic	Intergenic	-155337	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding	0.749	1.135	1.564	1.482	0.378	0.148	0.139	0.172		0.189	0.119	0.055	0.422	0.050	0.062	0.463	0.341	4.680	3.322	0.465	0.664	11.245	4.399	0.478	nan	0.306	nan	2.474	2.380	0.485	0.166	0.185	0.500	0.373	0.960	0.330	0.980	2.016	1.229	0.172	0.069	0.045	0.012	0.139	0.055	0.045	0.187	0.077	0.151
3192	chr16	84001355	84015279	+	0	NA	intron (NM_001329749, intron 2 of 11)	MIRb|SINE|MIR	6080	NM_001329748	54550	Hs.140950	NM_019065	ENSG00000103154	NECAB2	EFCBP2|stip-2	N-terminal EF-hand calcium binding protein 2	protein-coding	nan	0.414	0.987	0.134	0.347	0.184	4.008	0.045	0.035	0.055	0.052	1.255	0.403	0.093	0.044	0.285	0.297	0.096	0.169	0.705	0.657	0.674	0.224	0.263	0.305	0.087	0.145	0.267	0.686	0.900	0.902	0.154	0.273	0.128	0.108	0.445	0.654	0.385	0.392	0.097	0.372	0.032	0.074	4.008	1.255	0.077	0.029	0.036	0.170
4294	chr2	38662912	38711978	+	0	NA	intron (NR_110259, intron 4 of 4)	L2c|LINE|L2	55437	NR_110259	101929596	Hs.537341	NR_110259		LOC101929596	-	uncharacterized LOC101929596	ncRNA	0.871	nan	nan	0.095	0.265	0.150	0.335	0.154	0.108	0.095	0.140	0.088	1.191	0.073	0.111	0.910	0.787	0.907	2.839	0.321	0.404	0.305	0.123	7.174	nan	0.344	0.626	0.274	0.347	nan	0.447	0.761	0.771	0.076	0.080	0.363	0.646	0.382	0.477	0.103	0.114	0.037	0.123	0.335	0.088	0.055	0.039	0.364	0.145
5159	chr21	45431080	45449932	+	0	NA	intron (NM_003274, intron 1 of 22)	AluJo|SINE|Alu	8300	NM_003274	7109	Hs.126221	NM_003274	ENSG00000160218	TRAPPC10	EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30	trafficking protein particle complex 10	protein-coding	nan	1.517	3.028	0.822	1.003	0.501	0.758	0.440	0.137	0.325	0.234	1.186	2.453	0.512	0.078	1.456	1.646	1.564	2.110	1.990	1.781	nan	0.442	1.924	1.741	1.085	nan	1.776	2.418	2.858	2.752	0.905	1.616	1.431	1.460	1.854	4.779	1.391	0.873	0.805	0.864	0.419	1.091	0.758	1.186	0.323	0.538	0.191	2.987
1545	chr11	78821208	78835429	+	0	NA	intron (NM_001098816, intron 4 of 33)	intron (NM_001098816, intron 4 of 33)	284835	NR_030598	100126333		NR_030598	ENSG00000211997	MIR708	MIRN708|hsa-mir-708	microRNA 708	ncRNA	nan	0.976	1.124	0.080	0.232	0.137	0.462	0.069	0.011	0.089	0.094	0.212	0.381	0.030	0.113	6.132	5.896	3.415	3.172	0.557	0.506	0.769	0.199	5.672	5.846	0.431	0.826	0.773	1.031	0.508	0.269	3.367	5.783	1.254	1.759	0.817	2.180	0.402	0.531	0.020	0.110	0.382	0.229	0.462	0.212	0.380	0.322	6.337	1.213
8352	chrUn_gl000214	28431	33034	+	0	NA	NA	Intergenic	NA	NA									2.005	nan	nan	1.603	0.640	0.246	0.949	0.853	0.417	0.780	0.475	4.008	1.077	0.331	0.135	nan	1.119	0.476	0.590	0.877	0.922	3.778	1.340	0.499	0.461	3.250	4.551	1.651	2.377	2.083	nan	1.136	1.366	0.200	0.295	1.619	1.979	7.936	nan	0.072	0.655	0.082	0.173	0.949	4.008	0.507	3.085	0.279	0.403
6468	chr5	138852408	138863474	+	0	NA	exon (NM_001301738, exon 5 of 6)	exon (NM_001301738, exon 5 of 6)	3946	NM_001301738	340061	Hs.379754	NM_198282	ENSG00000184584	TMEM173	ERIS|MITA|MPYS|NET23|SAVI|STING|hMITA|hSTING	transmembrane protein 173	protein-coding	2.827	1.510	nan	0.366	0.749	0.406	0.288	1.171	0.173	0.091	0.104	0.921	3.589	0.149	0.096	0.347	0.674	0.883	1.684	1.217	1.281	0.489	0.207	0.529	0.580	0.388	0.750	2.338	2.870	3.976	3.530	0.691	1.118	1.218	1.023	0.443	1.254	0.743	0.528	1.341	4.796	0.337	0.065	0.288	0.921	0.414	1.287	1.173	0.284
1058	chr10	18937889	18951010	+	0	NA	Intergenic	Intergenic	-3864	NM_178815	221079	Hs.25362	NM_178815	ENSG00000165997	ARL5B	ARL8	ADP ribosylation factor like GTPase 5B	protein-coding	nan	1.889	1.788	2.500	2.504	1.225	0.795	3.716	0.293	0.993	0.592	2.784	2.883	1.768	0.103	3.820	3.674	3.393	5.017	3.341	2.815	8.731	4.641	5.346	5.370	2.613	3.191	2.915	4.744	1.992	2.074	1.345	2.522	1.817	2.050	2.772	3.572	1.587	0.815	0.747	0.692	0.181	1.271	0.795	2.784	0.312	1.315	1.019	1.018
7561	chr7	156911321	156919142	+	0	NA	Intergenic	Intergenic	-16424	NM_014671	9690	Hs.118351	NM_014671	ENSG00000009335	UBE3C	HECTH2	ubiquitin protein ligase E3C	protein-coding	0.646	0.459	nan	0.056	0.476	0.122	0.114	0.137	0.041	0.080	0.126	0.245	0.282	0.106	0.183	0.517	0.666	0.319	0.286	0.398	0.464	0.329	0.122	0.149	0.098	0.180	0.327	0.409	0.554	0.363	0.178	5.848	4.500	0.114	0.183	0.184	0.292	0.671	0.653	0.434	0.464	0.012	0.091	0.114	0.245	0.062	0.143	3.047	0.015
4989	chr20	48803611	48812635	+	0	NA	exon (NM_001285878, exon 1 of 1)	exon (NM_001285878, exon 1 of 1)	483	NR_125739	101927559	Hs.442486	NR_125739	ENSG00000277449	CEBPB-AS1	-	CEBPB antisense RNA 1	ncRNA	nan	nan	2.965	5.235	3.727	1.970	2.589	5.164	0.251	2.165	0.507	3.134	10.980	5.562	0.150	3.693	7.566	2.011	3.936	1.983	1.763	6.434	2.806	10.387	9.970	2.157	2.869	5.561	6.119	nan	4.810	8.119	8.884	1.506	1.974	2.767	5.465	1.525	1.031	2.470	5.496	0.287	3.366	2.589	3.134	0.949	2.355	2.083	0.985
6192	chr5	16536791	16555771	+	0	NA	intron (NM_001034850, intron 3 of 8)	AluJr|SINE|Alu	-37174	NM_019000	54463	Hs.481704	NM_019000	ENSG00000154153	FAM134B	JK-1|JK1	family with sequence similarity 134 member B	protein-coding	nan	nan	4.811	2.623	0.553	0.211	0.221	0.246	0.235	0.448	0.289	0.717	nan	0.050	0.104	0.415	0.330	0.406	0.783	0.590	0.576	0.945	0.768	0.164	0.174	nan	2.157	0.789	1.003	0.942	0.868	0.236	0.309	0.447	0.665	0.305	nan	1.357	1.072	0.115	0.042	0.080	0.163	0.221	0.717	0.123	0.330	0.120	0.096
5417	chr3	82041504	82056828	+	0	NA	Intergenic	Intergenic	-238216	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	1,4-alpha-glucan branching enzyme 1	protein-coding	nan	0.680	1.508	0.471	0.931	0.555	0.204	0.043	0.062	0.306	0.266	0.309	0.371	0.071	0.092	0.291	0.210	0.277	0.331	0.519	0.629	7.057	2.232	0.161	0.149	1.199	1.245	0.666	0.403	1.147	1.089	0.093	0.177	0.750	0.913	0.343	0.896	0.758	0.376	0.019	0.083	0.111	0.105	0.204	0.309	0.013	0.416	0.026	0.153
8306	chr9	134267375	134298818	+	0	NA	Intergenic	Intergenic	-22381	NM_013318	84726	Hs.743955	NM_013318	ENSG00000130723	PRRC2B	BAT2L|BAT2L1|KIAA0515|LQFBS-1	proline rich coiled-coil 2B	protein-coding	nan	2.404	3.346	1.700	1.155	0.592	1.182	0.944	0.265	1.292	0.544	1.704	2.815	0.918	0.087	1.666	2.651	2.085	3.045	3.103	2.870	nan	0.614	1.279	1.238	1.007	1.356	4.168	6.279	4.757	5.514	0.778	1.403	1.969	2.458	1.963	3.419	1.267	0.852	0.929	1.134	0.423	1.242	1.182	1.704	0.576	0.995	0.431	0.999
6211	chr5	22747904	22759732	+	0	NA	intron (NM_004061, intron 1 of 14)	(CATA)n|Simple_repeat|Simple_repeat	99913	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding	0.582	1.177	2.092	0.318	0.177	0.062	0.194	0.181	0.162	0.132	0.210	0.064	0.475	0.027	0.116	0.380	0.290	0.112	0.220	0.378	0.505	0.148	0.072	0.112	0.069	nan	6.940	0.433	0.338	8.065	7.735	0.108	0.223	0.294	0.249	0.234	0.347	nan	0.642	0.005	0.142	0.130	0.040	0.194	0.064	0.465	0.060	0.009	0.052
8181	chr9	86588874	86611180	+	0	NA	intron (NM_024945, intron 1 of 2)	intron (NM_024945, intron 1 of 2)	-4330	NM_031262	3190	Hs.522257	NM_002140	ENSG00000165119	HNRNPK	AUKS|CSBP|HNRPK|TUNP	heterogeneous nuclear ribonucleoprotein K	protein-coding	2.677	2.004	2.638	3.219	6.949	3.917	1.853	1.359	0.195	1.685	0.872	4.034	3.011	1.162	0.092	2.235	1.828	3.388	4.218	4.902	5.083	2.483	1.479	4.028	4.279	1.562	1.975	4.185	6.364	2.188	2.321	1.657	2.926	3.777	4.776	3.370	2.506	2.032	1.132	0.990	1.127	0.763	0.996	1.853	4.034	0.660	0.833	0.578	0.704
3141	chr16	52287281	52308913	+	0	NA	intron (NR_135281, intron 1 of 2)	intron (NR_135281, intron 1 of 2)	5621	NR_135281	283854	Hs.266768	NR_135281	ENSG00000260887	CASC22	LINC01373|LincRNA-ENST00000515084|TCONS_00024290	cancer susceptibility candidate 22 (non-protein coding)	ncRNA	nan	nan	nan	1.423	1.019	0.638	1.526	0.128	0.150	0.058	0.060	1.645	0.707	0.035	0.089	0.291	0.193	0.115	0.121	1.490	1.965	1.360	0.381	0.659	0.740	0.909	nan	nan	nan	nan	0.150	0.096	0.134	0.245	0.378	0.245	nan	nan	0.526	2.804	0.201	0.053	0.088	1.526	1.645	0.049	0.150	0.028	0.057
1535	chr11	77177451	77185212	+	0	NA	intron (NM_001128620, intron 1 of 15)	intron (NM_001128620, intron 1 of 15)	3777	NM_002576	5058	Hs.435714	NM_002576	ENSG00000149269	PAK1	PAKalpha	p21 (RAC1) activated kinase 1	protein-coding	nan	2.313	3.553	1.293	3.816	1.880	1.327	0.274	0.062	1.124	0.472	1.994	6.278	1.538	0.143	0.591	1.091	2.366	2.927	4.030	3.564	2.107	1.101	8.664	9.048	5.537	6.677	3.110	4.168	1.151	1.188	1.550	2.743	1.950	1.685	1.514	3.187	1.506	0.976	1.396	1.076	0.440	1.473	1.327	1.994	0.912	1.374	1.190	0.226
5299	chr22	46422267	46487693	+	0	NA	TTS (NR_027034)	TTS (NR_027034)	-4956	NM_018280	55267	Hs.567529	NM_018280	ENSG00000182257	PRR34	C22orf26	proline rich 34	protein-coding	5.375	6.450	nan	5.182	5.809	3.026	1.991	2.818	0.299	3.144	1.592	5.341	9.302	4.262	0.158	8.631	9.659	4.192	7.138	16.126	13.763	2.843	0.939	11.873	11.779	6.710	8.995	2.435	3.595	10.961	13.575	4.706	7.786	8.099	7.647	0.170	0.380	5.109	3.219	6.469	3.630	2.467	0.837	1.991	5.341	0.728	3.198	3.216	0.043
4978	chr20	46754525	46800559	+	0	NA	Intergenic	Intergenic	-158681	NR_110027	101927457	Hs.445823	NR_110027		LINC01522	-	long intergenic non-protein coding RNA 1522	ncRNA	nan	nan	0.965	0.084	0.442	0.275	0.720	0.319	0.105	0.120	0.092	1.779	5.247	0.043	0.085	1.112	2.116	0.210	0.322	3.598	3.999	nan	0.093	0.126	0.126	0.664	1.088	0.143	0.168	nan	1.045	1.260	1.054	0.078	0.096	0.440	0.939	0.145	0.238	0.810	0.935	0.045	0.381	0.720	1.779	0.257	0.024	0.355	0.211
3775	chr18	43912845	43925034	+	0	NA	intron (NM_001256758, intron 1 of 5)	intron (NM_001256758, intron 1 of 5)	4752	NM_001256758	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding	nan	1.471	2.765	1.342	1.367	0.894	3.400	0.243		0.988	0.703	2.465	2.825	0.278	0.072	2.513	3.118	0.461	0.647	6.793	5.955	3.734	1.278	0.643	0.730	1.454	2.086	1.889	2.521	3.237	4.057	0.861	1.658	1.981	1.463	3.695	nan	3.611	2.273	2.205	2.143	0.511	1.711	3.400	2.465	0.859	0.042	0.456	1.700
5258	chr22	37762132	37784489	+	0	NA	intron (NM_052906, intron 2 of 2)	MIR3|SINE|MIR	-22431	NR_110515	100506271	Hs.220558	NR_110515	ENSG00000237862	LOC100506271	-	uncharacterized LOC100506271	ncRNA	1.303	nan	0.396	0.032	0.558	0.251	0.337	0.093	0.065	0.042	0.054	0.155	0.352	0.106	0.084	3.089	4.577	0.191	0.231	0.633	0.613	0.169	0.079	0.508	0.569	0.132	nan	0.132	0.154	nan	1.166	2.198	3.132	0.164	0.258	0.158	0.210	0.386	0.278	0.506	0.407	0.021	0.742	0.337	0.155	0.655	0.049	2.867	0.017
7718	chr8	64080089	64082391	+	0	NA	promoter-TSS (NR_102684)	promoter-TSS (NR_102684)	54	NM_001277817	253943	Hs.491861	NM_152758	ENSG00000185728	YTHDF3	-	YTH N6-methyladenosine RNA binding protein 3	protein-coding	12.673	5.451	7.779	8.809	7.248	4.016	5.373	4.919	0.208	3.411	1.408	6.663	15.261	6.073	0.150	6.631	6.853	13.101	19.282	16.843	14.764	11.695	7.221	12.548	11.744	7.642	8.017	7.228	11.437	10.824	12.153	5.613	12.168	11.157	10.995	10.101	8.731	6.594	3.276	3.541	5.631	2.063	4.281	5.373	6.663	13.751	6.029	2.072	3.125
5690	chr3	176498362	176512976	+	0	NA	Intergenic	Intergenic	29120	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA	1.276	1.235	0.717	0.235	0.618	0.198	0.176	0.194	0.197	0.164	0.135	0.251	1.588	0.038	0.092	0.318	0.273	0.342	0.592	0.493	0.521	1.007	0.362	0.209	0.215	4.406	3.947	0.551	0.506	0.990	0.718	0.079	0.298	0.595	0.542	0.360	0.374	0.705	0.630	1.115	0.195	0.177	0.092	0.176	0.251	0.146	0.090	0.075	0.060
1335	chr11	19494448	19498977	+	0	NA	intron (NM_001111018, intron 1 of 37)	intron (NM_001111018, intron 1 of 37)	32064	NR_049725	100874012	Hs.434602	NR_049725	ENSG00000255043	NAV2-AS5	-	NAV2 antisense RNA 5	ncRNA	0.782	nan	1.738	0.255	0.372	0.324	0.169	0.080		0.209	0.148	0.978	1.396	0.024	0.108	nan	13.309	3.458	1.322	1.785	1.792	1.426	0.398	0.547	0.572	0.403	nan	0.134	0.351	0.360	0.229	3.246	4.737	0.114	0.179	0.252	0.243	0.959	nan	0.098	0.138	0.043	0.713	0.169	0.978	0.105	0.023	2.433	0.135
4652	chr2	192856239	192866677	+	0	NA	intron (NM_016192, intron 7 of 9)	L1MC5|LINE|L1	-149452	NM_004657	8436	Hs.26530	NM_004657	ENSG00000168497	SDPR	CAVIN2|PS-p68|SDR|cavin-2	serum deprivation response	protein-coding	0.798	nan	0.824	0.100	0.211	0.048	0.098	0.138	0.078	0.165	0.124	0.023	0.301	0.031	0.075	0.313	0.262	0.223	0.400	0.235	0.288	0.234	0.208	0.356	0.337	6.327	6.640	0.492	0.331	1.546	1.027	0.190	0.190	0.076	0.094	0.473	1.249	0.411	0.166	0.064	0.086	0.033	0.046	0.098	0.023	0.102	0.039	0.047	0.202
3780	chr18	45455869	45459903	+	0	NA	promoter-TSS (NM_005901)	promoter-TSS (NM_005901)	-369	NM_001003652	4087	Hs.12253	NM_005901	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding	nan	4.269	6.331	7.716	5.912	3.191	11.950	2.123	0.206	1.593	0.713	8.259	12.287	4.201	0.092	7.791	8.645	8.366	10.998	14.242	10.820	13.561	8.346	11.573	11.123	2.755	3.827	6.557	10.745	6.195	6.655	4.145	7.434	9.556	8.772	5.852	nan	5.149	3.072	6.011	4.954	2.610	3.576	11.950	8.259	1.638	3.779	1.695	3.951
4847	chr20	10470879	10496775	+	0	NA	intron (NM_001009608, intron 2 of 7)	intron (NM_001009608, intron 2 of 7)	67876	NM_001009608	128710	Hs.668782	NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding	1.043	nan	0.951	0.891	0.415	0.190	0.585	1.959	0.318	0.225	0.189	0.250	0.680	0.066	0.097	1.435	1.725	0.948	1.153	0.439	0.482	2.278	0.463	0.489	0.489	2.957	3.843	1.724	2.097	1.546	0.880	0.245	0.385	0.498	1.509	0.795	1.777	0.938	0.778	0.808	0.248	0.040	0.080	0.585	0.250	0.176	0.808	0.067	0.383
5240	chr22	30083127	30142340	+	0	NA	Intergenic	Intergenic	-3611	NM_182527	164633	Hs.643608	NM_182527	ENSG00000100314	CABP7	CALN2	calcium binding protein 7	protein-coding	nan	0.881	2.666	0.362	0.561	0.282	1.002	0.150	0.106	0.556	0.362	0.362	5.514	0.070	0.057	0.982	1.819	0.247	nan	1.457	1.193	1.622	0.354	0.333	0.329	2.135	nan	1.173	1.497	1.321	1.567	0.399	0.493	2.590	2.487	0.568	nan	4.312	2.010	3.311	0.669	1.436	0.091	1.002	0.362	1.240	2.988	0.236	0.253
165	chr1	27886758	27903158	+	0	NA	intron (NM_001029882, intron 1 of 6)	CpG	35047	NM_001029882	27245	Hs.469280	NM_001029882	ENSG00000126705	AHDC1	MRD25	AT-hook DNA binding motif containing 1	protein-coding	2.662	1.517	nan	2.021	0.698	0.384	4.323	1.040	0.167	0.295	0.147	0.532	1.145	2.133	0.123	1.590	1.967	0.933	1.428	2.296	2.547	1.006	0.442	1.349	1.187	2.466	3.037	2.786	3.943	1.068	0.778	1.010	1.103	0.468	0.406	1.597	2.584	1.126	0.716	2.767	0.878	0.117	0.299	4.323	0.532	1.167	0.498	0.266	0.491
6588	chr6	3568034	3587727	+	0	NA	Intergenic	Intergenic	-121087	NM_015482	63027	Hs.713588	NM_015482	ENSG00000137266	SLC22A23	C6orf85	solute carrier family 22 member 23	protein-coding	1.344	0.897	1.457	0.151	0.346	0.147	0.591	1.687	0.213	0.190	0.189	0.537	0.174	0.039	0.113	2.444	3.326	5.765	5.973	0.560	0.597	1.138	0.427	1.326	1.258	0.670	1.055	0.308	0.324	1.254	1.274	1.230	1.708	0.831	0.830	0.663	2.123	1.412	0.775	0.043	0.212	0.217	0.271	0.591	0.537	0.485	0.083	0.670	0.599
4579	chr2	166095855	166113436	+	0	NA	intron (NM_001040142, intron 1 of 26)	L2a|LINE|L2	8733	NM_001040142	6326	Hs.93485	NM_021007	ENSG00000136531	SCN2A	BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2	sodium voltage-gated channel alpha subunit 2	protein-coding	0.819	1.098	nan	3.037	3.176	1.731	0.150	0.101	0.101	2.103	1.601	1.616	0.832	0.043	0.085	0.320	0.229	0.288	0.422	0.328	0.442	2.216	0.787	0.286	0.249	1.003	1.071	1.665	1.215	0.786	0.413	0.120	0.236	0.012	0.009	0.467	1.277	0.789	0.395	0.044	0.328			0.150	1.616	0.047	0.189	0.034	0.327
4509	chr2	136862301	136902985	+	0	NA	Intergenic	Intergenic	-6918	NM_003467	7852	Hs.593413	NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS	C-X-C motif chemokine receptor 4	protein-coding	nan	1.062	nan	0.847	0.851	0.447	1.811	0.061	0.075	0.732	0.500	2.529	6.402	0.392	0.057	0.468	0.708	0.412	0.747	2.338	1.636	5.564	1.591	0.159	0.159	1.041	1.369	2.374	nan	1.379	1.693	0.490	1.156	1.953	2.165	0.531	1.110	1.655	0.852	4.462	1.171	0.441	0.354	1.811	2.529	0.403	0.367	0.419	0.157
6074	chr4	169913029	169948016	+	0	NA	intron (NM_032783, intron 1 of 4)	intron (NM_032783, intron 1 of 4)	946	NM_032783	84869	Hs.659311	NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding	nan	nan	nan	0.688	0.864	0.500	0.308	0.405	0.101	0.174	0.148	0.859	1.064	0.311	0.084	0.580	0.640	2.549	5.715	0.795	0.738	0.821	0.418	1.656	1.692	0.800	0.998	0.808	1.093	0.954	0.924	0.434	0.799	0.529	0.492	1.026	1.841	0.814	0.514	0.136	0.366	0.117	0.482	0.308	0.859	0.119	0.226	0.208	0.454
2553	chr14	35999926	36025879	+	0	NA	intron (NM_194301, intron 39 of 39)	AluSz6|SINE|Alu	9654	NM_032594	84684	Hs.62813	NM_032594	ENSG00000168348	INSM2	IA-6|IA6|mlt1	INSM transcriptional repressor 2	protein-coding	1.564	1.084	1.023	0.338	0.628	0.229	1.313	0.155	0.155	0.133	0.149	0.310	0.960	0.096	0.131	0.369	0.300	0.131	0.206	0.608	0.668	3.210	1.193	0.267	0.219	1.285	1.692	0.861	0.821	1.187	0.876	0.327	0.697	0.382	0.303	1.765	3.496	0.592	0.457	0.185	0.157	0.147	0.565	1.313	0.310	0.105	0.340	0.107	0.191
2979	chr15	89019795	89043850	+	0	NA	Intergenic	Intergenic	21138	NR_135917	64963	Hs.111286	NM_022839	ENSG00000181991	MRPS11	HCC-2|MRP-S11|S11mt	mitochondrial ribosomal protein S11	protein-coding	1.123	nan	1.084	0.111	0.343	0.247	0.197	0.078	0.073	0.156	0.152	0.179	1.138	0.040	0.065	0.480	0.548	0.422	0.507	0.451	0.582	0.549	0.186	0.232	0.174	0.341	0.590	0.439	0.523	2.987	2.677	0.477	0.764	0.258	0.181	1.384	3.945	1.078	0.624	0.193	0.429	0.024	0.251	0.197	0.179	0.085	0.114	0.201	1.512
3270	chr17	8112005	8131182	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	5768	NR_026951	284029	Hs.121692	NM_173621	ENSG00000178977	LINC00324	C17orf44|NCRNA00324	long intergenic non-protein coding RNA 324	ncRNA	2.949	1.564	2.053	1.185	2.301	1.313	1.293	1.145	0.260	0.870	0.362	1.698	5.412	1.146	0.054	2.247	3.030	2.052	3.150	3.143	2.821	5.478	1.818	2.571	2.926	2.020	2.926	3.747	4.508	1.948	2.052	1.126	1.704	1.862	2.082	3.145	6.077	0.661	0.321	0.980	1.698	0.428	0.970	1.293	1.698	0.724	1.742	2.010	2.235
7880	chr8	110642738	110662755	+	0	NA	intron (NM_001099746, intron 1 of 5)	intron (NM_001099746, intron 1 of 5)	2673	NM_001099756	55638	Hs.390738	NM_017786	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin	protein-coding	nan	nan	2.080	0.889	1.050	0.553	0.820	0.390	0.104	0.110	0.112	0.690	1.365	0.228	0.049	0.342	0.233	0.185	0.328	1.545	1.360	nan	1.441	2.031	nan	1.365	nan	0.897	1.161	0.739	0.617	0.174	0.387	1.165	1.475	0.661	1.530	0.754	0.630	1.273	3.657	0.363	0.274	0.820	0.690	0.140	0.730	0.065	0.160
2961	chr15	77787614	77808621	+	0	NA	Intergenic	Intergenic	-19820	NR_135692	101929457	Hs.637111	NR_135692	ENSG00000259362	LOC101929457	-	uncharacterized LOC101929457	ncRNA	1.034	1.360	1.103	0.230	1.243	0.757	0.408	2.515	0.405	0.239	0.110	0.462	4.676	0.078	0.093	2.123	2.829	0.820	1.295	0.501	0.512	1.131	0.291	0.269	0.379	0.911	1.487	0.584	0.551	0.591	0.318	2.790	3.744	0.341	0.328	0.438	0.907	0.465	0.371	0.397	0.182	0.073	0.068	0.408	0.462	0.453	0.124	2.398	0.287
2569	chr14	39410626	39422427	+	0	NA	Intergenic	MLT2D|LTR|ERVL	-30440	NR_039982	283547	Hs.675941	NR_039982	ENSG00000259070	LINC00639	-	long intergenic non-protein coding RNA 639	ncRNA	nan	0.716	nan	0.096	0.228	0.149	0.076	3.204	1.137	0.107	0.064	0.103	0.297	0.064	0.065	0.442	0.315	5.566	8.091	0.317	0.348	0.243	0.096	0.283	0.270	1.848	1.923	0.234	0.234	0.597	0.300	0.305	0.560	0.128	0.121	0.169	0.209	0.532	0.568	0.039	0.098	0.024	0.048	0.076	0.103	0.008	0.095	0.100	0.042
319	chr1	55676658	55682790	+	0	NA	intron (NM_015306, intron 1 of 67)	intron (NM_015306, intron 1 of 67)	1315	NM_015306	23358	Hs.477009	NM_015306	ENSG00000162402	USP24	-	ubiquitin specific peptidase 24	protein-coding	5.551	2.759	5.522	2.526	4.437	2.612	3.783	2.172	0.426	1.914	0.997	5.081	6.269	3.486	0.092	4.085	4.991	3.362	6.077	11.396	10.606	4.141	2.065	10.637	11.444	3.434	5.134	5.965	10.125	5.091	5.133	4.578	9.568	2.591	2.447	5.298	nan	2.559	1.438	3.403	3.391	0.436	1.538	3.783	5.081	0.974	2.058	4.667	1.576
2571	chr14	42069188	42088522	+	0	NA	intron (NM_001346173, intron 1 of 4)	intron (NM_001346173, intron 1 of 4)	2796	NM_152447	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	nan	0.914	nan	1.602	1.038	0.606	0.377	0.512	0.150	0.171	0.138	2.226	13.982	0.089	0.134	0.273	0.228	0.130	0.217	11.993	10.020	1.910	0.491	0.634	0.690	3.784	4.616	1.500	1.909	1.753	1.871	0.074	0.164	0.415	0.314	0.699	1.153	1.986	1.155	8.069	1.629	0.072	1.873	0.377	2.226	0.082	0.136	0.015	0.308
1179	chr10	93348991	93357877	+	0	NA	intron (NR_024467, intron 1 of 4)	intron (NR_024467, intron 1 of 4)	17783	NR_024467	100188947	Hs.535293	NR_024467		HECTD2-AS1	-	HECTD2 antisense RNA 1	ncRNA	0.733	0.610	2.624	0.455	0.434	0.218	0.454	3.149	0.180	0.266	0.079	0.604	3.444	0.032	0.086	0.244	0.163	0.270	0.574	0.573	0.479	12.189	5.008	0.103	0.181	0.755	1.189	nan	0.790	0.434	0.372	0.164	0.188	1.435	0.797	0.351	0.519	0.494	0.537	0.048	0.510	0.278	1.537	0.454	0.604	0.297	0.058		0.110
1922	chr12	44770164	44782877	+	0	NA	intron (NM_032256, intron 7 of 7)	intron (NM_032256, intron 7 of 7)	492924	NM_001145109	4753	Hs.505326	NM_006159	ENSG00000184613	NELL2	NRP2	neural EGFL like 2	protein-coding	1.496	nan	1.277	0.090	0.404	0.088	0.212	0.099	0.063	1.854	0.810	0.452	0.109	0.016	0.105	0.360	0.369	0.205	0.285	0.313	0.292	2.760	1.328	0.262	0.262	0.847	1.099	0.236	0.266	2.416	3.090	0.106	0.215	1.198	1.401	3.044	7.105	2.454	1.234	0.013	0.315	0.407	0.019	0.212	0.452	0.426	0.151	0.071	2.628
735	chr1	187033110	187051300	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-19769	NR_126347	104169671		NR_126347		LINC01036	-	long intergenic non-protein coding RNA 1036	ncRNA	nan	nan	1.027	0.294	0.343	0.193	0.729	0.226	0.160	0.564	0.433	0.582	3.407	0.066	0.105	0.526	0.380	0.364	0.454	0.674	nan	5.764	2.117	nan	0.378	8.106	8.415	0.301	0.295	0.816	0.745	0.202	0.382	2.374	2.614	0.447	nan	0.690	0.473	0.155	1.200	0.394	0.078	0.729	0.582	0.550	0.246	0.038	0.170
2948	chr15	73659297	73669834	+	0	NA	Intergenic	Intergenic	-2960	NM_005477	10021	Hs.86941	NM_005477	ENSG00000138622	HCN4	SSS2	hyperpolarization activated cyclic nucleotide gated potassium channel 4	protein-coding	0.945	0.945	0.423	0.596	0.860	0.464	1.283	0.064	0.076	0.709	0.529	1.945	4.798	0.256	0.059	1.280	1.993	0.157	0.345	1.365	0.899	0.952	0.286	0.117	0.094	0.148	0.246	2.486	2.579	1.489	1.669	0.488	0.995	0.218	0.172	0.431	0.638	0.987	0.628	2.135	4.279	0.064	0.233	1.283	1.945	0.240	0.202	0.199	0.104
1271	chr11	818764	833856	+	0	NA	TTS (NM_020376)	TTS (NM_020376)	-1950	NM_173584	283229	Hs.660936	NM_173584	ENSG00000177685	CRACR2B	EFCAB4A	calcium release activated channel regulator 2B	protein-coding	2.378	3.980	9.433	1.926	0.986	0.696	1.471	0.859	0.192	1.373	0.627	2.137	2.956	1.330	0.073	3.207	4.638	2.364	3.155	2.454	2.257	2.685	0.980	1.757	1.753	1.447	2.224	4.411	5.230	1.577	1.689	1.409	2.217	1.322	1.063	0.902	1.574	1.704	0.978	2.128	3.417	0.202	0.388	1.471	2.137	0.220	1.940	0.912	0.337
6921	chr6	118717239	118724789	+	0	NA	Intergenic	Intergenic	-101522	NR_002730	23629	Hs.648050	NR_002730		BRD7P3	BP75	bromodomain containing 7 pseudogene 3	pseudo	nan	2.646	nan	0.706	0.256	0.128	1.187	0.160	0.129	0.378	0.185	0.111	5.103	0.058	0.158	0.467	0.342	0.418	0.429	0.641	nan	nan	0.110	0.326	0.246	0.366	nan	1.076	1.404	0.517	0.331	0.086	0.172	0.132	0.318	0.153	nan	1.033	0.839	8.033	0.306	0.013	0.085	1.187	0.111	0.117	0.305	0.027	0.051
4566	chr2	162134987	162139348	+	0	NA	Intergenic	Intergenic	-26013	NR_110593	101929512	Hs.666488	NR_110593		LOC101929512	-	uncharacterized LOC101929512	ncRNA	6.016	4.012	nan	0.475	2.076	1.030	1.032	0.807	0.623	9.469	4.244	0.440	2.407	0.123	0.371	2.035	1.206	1.471	2.031	1.871	2.211	1.576	0.616	0.756	0.528	1.177	2.385	0.556	0.592	2.671	0.905	0.621	0.939	0.606	0.878	1.579	1.889	4.381	5.913	0.090	0.410	0.283	0.530	1.032	0.440	0.090	0.442	0.136	0.283
7324	chr7	73234125	73270686	+	0	NA	intron (NM_152559, intron 5 of 5)	AluJo|SINE|Alu	4450	NM_152559	155368	Hs.647042	NM_152559	ENSG00000165171	WBSCR27	-	Williams Beuren syndrome chromosome region 27	protein-coding	nan	1.981	1.442	2.757	2.415	1.248	1.315	1.269	0.339	1.394	0.756	2.994	3.860	0.338	0.135	2.395	3.357	1.897	nan	4.109	3.749	2.002	1.008	0.438	0.497	0.242	nan	5.355	nan	2.088	2.133	1.438	2.334	1.995	2.368	0.463	1.126	2.526	1.302	2.650	4.294	0.688	0.701	1.315	2.994	0.744	0.837	1.964	0.239
1710	chr11	122924669	122944107	+	0	NA	Intergenic	Intergenic	-1345	NM_153201	3312	Hs.180414	NM_006597	ENSG00000109971	HSPA8	HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71	heat shock protein family A (Hsp70) member 8	protein-coding	1.681	2.411	1.759	2.612	4.202	2.072	2.454	1.477	0.226	2.148	1.114	3.006	5.662	2.450	0.125	4.285	3.969	3.013	4.052	4.585	5.095	4.537	2.876	7.304	7.920	3.411	4.015	3.155	4.010	4.233	4.149	8.405	9.991	3.161	3.976	2.708	nan	2.068	1.294	4.282	2.719	0.822	1.502	2.454	3.006	0.390	1.076	4.229	1.089
4783	chr2	239193280	239200033	+	0	NA	intron (NM_022817, intron 1 of 22)	intron (NM_022817, intron 1 of 22)	551	NM_022817	8864	Hs.58756	NM_003894	ENSG00000132326	PER2	FASPS|FASPS1	period circadian clock 2	protein-coding	5.141	nan	7.520	2.018	2.548	1.311	1.819	0.757	0.024	1.459	0.425	6.282	3.656	0.787	0.174	3.178	5.370	3.676	8.332	2.379	1.942	3.339	2.756	4.708	5.034	1.531	2.263	5.683	7.480	1.844	2.572	3.714	5.249	5.846	4.153	2.223	1.690	1.940	1.338	0.866	2.870	0.819	2.152	1.819	6.282	0.376	4.480	2.830	0.677
1133	chr10	71389207	71404329	+	0	NA	Intergenic	Intergenic	6765	NM_145306	219738	Hs.522992	NM_145306	ENSG00000171224	C10orf35	-	chromosome 10 open reading frame 35	protein-coding	0.986	nan	6.293	0.226	0.745	0.329	0.377	0.099	0.053	0.407	0.284	0.786	1.045	0.325	0.048	0.767	0.829	0.865	1.146	2.100	2.020	0.900	0.286	0.475	0.495	0.354	0.503	1.170	nan	0.375	0.272	0.440	0.661	0.235	0.218	0.434	nan	0.463	0.496	0.197	0.275	0.019	0.163	0.377	0.786	0.153	0.188	0.085	0.146
6271	chr5	56467487	56473572	+	0	NA	promoter-TSS (NM_001127235)	promoter-TSS (NM_001127235)	-746	NM_001127235	65056	Hs.444279	NM_022913	ENSG00000062194	GPBP1	GPBP|SSH6|VASCULIN	GC-rich promoter binding protein 1	protein-coding	nan	5.304	3.984	2.547	4.525	2.306	2.695	3.500	0.257	1.345	0.685	1.551	7.215	3.976	0.148	3.227	3.087	9.106	13.983	5.720	4.856	nan	4.206	9.794	9.966	3.622	4.591	3.790	7.885	nan	7.664	2.624	5.522	5.069	6.981	6.584	5.824	1.874	1.076	1.570	5.891	0.969	2.126	2.695	1.551	0.703	2.092	1.664	2.098
5476	chr3	114563223	114602014	+	0	NA	intron (NR_121662, intron 2 of 6)	intron (NR_121662, intron 2 of 6)	-9262	NR_126422	104413890	Hs.612732	NR_126422	ENSG00000239946	ZBTB20-AS3	-	ZBTB20 antisense RNA 3	ncRNA	1.279	nan	1.114	0.156	5.009	2.686	0.281	0.283	0.104	1.063	0.608	1.363	0.358	0.039	0.071	0.921	0.573	1.000	0.874	0.833	nan	5.519	2.813	0.832	0.815	nan	4.419	0.474	0.434	1.120	0.705	0.241	0.299	1.263	1.442	0.450	1.414	1.498	0.954	1.499	0.255	0.302	0.076	0.281	1.363	0.257	0.358	0.074	0.360
2421	chr13	105165548	105171758	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-949563	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding	0.555	0.731	0.535	0.186	0.211	0.103	0.261	0.121	0.077	0.078	0.069	0.096	0.310	0.052	0.100	0.845	0.411	7.845	3.144	0.265	0.301	0.184	0.087	0.534	0.535	0.120	nan	0.358	0.290	0.461	0.197	0.228	0.395	0.068	0.065	0.338	nan	0.070	0.171	0.054	0.092	0.047	0.206	0.261	0.096	0.078	0.082	0.016	0.079
2837	chr15	32951834	32987493	+	0	NA	intron (NM_001144757, intron 2 of 5)	MamRep605|Unknown|Unknown	-4397	NR_135505	105370757	Hs.738329	NR_135505	ENSG00000241818	LOC105370757	-	uncharacterized LOC105370757	ncRNA	0.771	nan	nan	0.266	0.542	0.274	0.353	1.567	0.175	0.302	0.227	0.195	0.559	0.067	0.069	0.373	0.302	3.851	6.877	0.340	0.358	0.219	0.083	0.148	0.140	0.363	0.564	0.543	0.621	0.514	0.219	0.737	0.723	0.940	1.513	0.218	0.282	1.028	0.615	1.026	0.190	0.302	0.027	0.353	0.195	0.051	0.179	0.423	0.073
4456	chr2	105458347	105490167	+	0	NA	3' UTR (NM_006236, exon 1 of 1)	3' UTR (NM_006236, exon 1 of 1)	3731	NM_006236	5455	Hs.248158	NM_006236	ENSG00000198914	POU3F3	BRN1|OTF8|brain-1|oct-8	POU class 3 homeobox 3	protein-coding	0.407	nan	0.397	0.059	0.212	0.112	1.870	0.066	0.025	0.225	0.112	0.064	10.667	0.035	0.062	0.256	0.240	0.356	0.451	3.417	2.814	0.130	0.071	0.121	0.126	0.148	0.255	0.505	0.745	4.585	6.448	0.210	0.559	0.035	0.067	0.076	0.158	1.201	0.740	0.021	0.011	0.003	2.163	1.870	0.064	0.023	0.038	0.216	0.031
4132	chr19	49893534	49914549	+	0	NA	intron (NM_144688, intron 9 of 19)	intron (NM_144688, intron 9 of 19)	12566	NM_144688	147872	Hs.662085	NM_144688	ENSG00000161609	CCDC155	KASH5	coiled-coil domain containing 155	protein-coding	1.734	1.219	3.513	0.663	0.848	0.489	1.083	0.077	0.138	0.269	0.112	0.193	0.785	0.182	0.118	0.326	0.287	0.326	0.378	1.848	1.802	3.045	0.645	0.735	0.797	0.462	0.756	2.405	2.424	3.128	2.670	0.375	0.424	1.508	1.231	1.177	2.889	3.123	1.629	3.284	2.281	0.408	0.312	1.083	0.193	0.841	0.655	0.084	0.686
1118	chr10	59069135	59082448	+	0	NA	Intergenic	Intergenic	-11472	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	ncRNA	0.427	nan	0.533	0.072	0.181	0.124	0.086	0.067	0.108	0.059	0.050	0.045	0.137	0.054	0.071	0.349	0.133	0.256	0.186	0.098	0.168	5.840	2.826	0.250	0.248	0.079	0.117	0.193	0.182	0.100	0.052	0.089	0.119	0.088	0.105	0.072	0.185	0.295	0.332	0.021	0.020	0.043	0.012	0.086	0.045		0.015	0.015	0.019
1575	chr11	92559425	92591690	+	0	NA	intron (NM_001008781, intron 17 of 24)	intron (NM_001008781, intron 17 of 24)	73237	NR_135091	105369431	Hs.532389	NR_135091		LOC105369431	-	uncharacterized LOC105369431	ncRNA	1.309	nan	1.006	1.922	0.386	0.164	0.448	0.149	0.040	0.132	0.123	0.812	4.393	0.047	0.098	2.930	3.604	0.592	nan	2.522	2.699	1.088	0.376	2.746	3.006	1.410	1.908	4.583	4.756	0.911	0.619	1.033	1.888	4.726	4.717	0.233	nan	1.774	0.949	1.293	2.215	1.966	0.391	0.448	0.812	0.259	0.422	0.636	0.100
5152	chr21	44719147	44747455	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	18618	NR_103713	100126693	Hs.473952	NR_103713		LINC00322	C21orf136|NCRNA00322	long intergenic non-protein coding RNA 322	ncRNA	nan	1.684	1.556	0.311	1.010	0.545	1.145	0.101	0.075	0.189	0.100	0.473	2.087	0.048	0.075	1.941	2.493	2.309	2.965	0.737	0.714	nan	0.493	7.118	7.452	0.509	nan	2.464	3.092	0.724	0.646	1.513	2.198	1.109	1.241	0.254	0.325	2.101	1.280	1.099	1.846	0.265	0.142	1.145	0.473	0.298	1.853	1.481	0.047
7732	chr8	67443402	67460523	+	0	NA	Intergenic	Intergenic	46471	NM_152765	254778	Hs.268869	NM_152765	ENSG00000169085	C8orf46	-	chromosome 8 open reading frame 46	protein-coding	2.631	1.419	1.213	0.752	0.563	0.337	0.316	1.501	0.281	0.375	0.261	0.631	1.132	0.019	0.043	0.719	0.922	0.555	1.281	0.934	0.932	3.187	0.915	0.171	0.189	1.420	nan	0.347	0.377	nan	1.955	0.409	0.711	3.841	4.253	1.134	1.505	1.859	1.094	0.127	0.245	1.348	0.925	0.316	0.631	0.148	0.554	0.318	0.322
6938	chr6	123314391	123329850	+	0	NA	intron (NM_001010852, intron 2 of 5)	intron (NM_001010852, intron 2 of 5)	5004	NM_001010852	134829	Hs.486361	NM_001010852	ENSG00000146352	CLVS2	C6orf212|C6orf213|RLBP1L2|bA160A10.4	clavesin 2	protein-coding	0.748	1.062	0.770	0.084	0.501	0.218	0.755	0.063	0.063	0.442	0.311	0.951	1.946	0.056	0.089	0.370	0.205	0.166	0.209	3.036	2.848	7.469	2.966	0.215	0.229	2.476	2.692	0.313	0.440	0.925	1.051	0.274	0.477	0.585	0.339	0.228	0.299	1.631	0.994	0.968	0.092	0.135	0.380	0.755	0.951	0.207	0.033	0.128	0.131
2428	chr13	106013682	106018380	+	0	NA	Intergenic	Intergenic	-102185	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding	0.734	0.929	0.556	0.207	0.615	0.272	0.724	0.016		0.033	0.119	1.184	0.918	0.023	0.046	6.403	4.546	10.743	5.452	0.993	1.067	0.159	0.092	21.469	21.256	0.577	nan	0.389	0.401	0.522	0.253	0.152	0.266	0.009	0.042	0.221	nan	0.246	0.224	0.035	0.075		0.103	0.724	1.184	0.084	0.152	0.021	
5564	chr3	136535740	136541002	+	0	NA	5' UTR (NM_025246, exon 1 of 2)	intron (NM_001097600, intron 1 of 1)	510	NM_025246	80723	Hs.477692	NM_025246	ENSG00000168917	SLC35G2	TMEM22	solute carrier family 35 member G2	protein-coding	7.714	5.630	nan	5.057	5.393	3.314	2.563	1.106	0.276	1.133	0.745	4.372	3.934	1.486	0.052	1.752	2.401	1.246	1.247	9.623	7.708	13.630	6.409	1.250	1.312	0.484	0.806	5.317	8.666	nan	14.359	2.874	5.688	4.914	5.610	7.291	6.078	3.315	1.965	6.720	0.237	1.389	3.365	2.563	4.372	0.426	2.250	2.419	2.068
4718	chr2	218866275	218887559	+	0	NA	Intergenic	Intergenic	-22740	NR_034176	285180	Hs.570069	NM_198483	ENSG00000188282	RUFY4	ZFYVE31	RUN and FYVE domain containing 4	protein-coding	nan	0.540	nan	0.111	0.362	0.193	0.326	0.112	0.076	0.060	0.100	0.252	0.785	0.132	0.089	2.403	4.105	1.045	0.653	0.608	0.557	0.201	0.116	0.719	0.783	0.262	0.514	0.460	nan	0.477	0.386	0.763	0.971	0.039	0.062	0.777	1.304	0.317	0.354	0.241	0.080	0.027	0.096	0.326	0.252	0.215	0.028	0.121	0.128
5561	chr3	135910415	135917793	+	0	NA	promoter-TSS (NM_001145417)	promoter-TSS (NM_001145417)	584	NM_018133	55167	Hs.18631	NM_018133	ENSG00000174579	MSL2	MSL-2|MSL2L1|RNF184	male-specific lethal 2 homolog (Drosophila)	protein-coding	8.656	nan	nan	7.377	8.635	4.117	4.189	4.791	0.638	4.551	2.646	5.578	7.394	4.180	0.124	6.167	7.011	6.531	9.144	13.283	12.183	11.923	5.971	16.539	17.177	5.596	7.141	5.084	8.160	nan	13.547	6.756	12.771	3.892	3.495	8.062	7.283	3.247	1.737	5.869	5.693	1.034	5.794	4.189	5.578	1.872	1.967	5.818	3.444
7131	chr7	2543926	2580477	+	0	NA	intron (NM_001040167, intron 1 of 7)	intron (NM_001040167, intron 1 of 7)	2722	NM_001040168	3955	Hs.159142	NM_002304	ENSG00000106003	LFNG	SCDO3	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	1.561	3.127	6.895	3.675	1.736	0.780	0.518	0.215	0.106	1.628	0.752	5.119	nan	0.345	0.122	0.789	1.142	0.248	nan	3.544	3.290	nan	0.785	1.557	1.634	0.370	0.727	nan	10.272	0.427	0.383	0.544	0.679	1.212	1.268	0.810	2.144	1.382	0.809	2.523	2.879	0.428	1.365	0.518	5.119	0.322	4.442	0.344	0.545
4191	chr2	5505075	5531375	+	0	NA	Intergenic	MIRc|SINE|MIR	313025	NR_110580	102723818	Hs.128107	NR_110580		LINC01248	-	long intergenic non-protein coding RNA 1248	ncRNA	0.831	0.596	0.741	0.153	0.663	0.322	0.521	0.048	0.061	0.196	0.141	0.329	0.498	0.046	0.094	0.931	0.885	3.011	5.164	0.552	0.581	0.846	0.393	0.090	0.038	0.176	0.309	0.759	0.834	0.515	0.195	0.231	0.325	0.152	0.289	0.378	0.697	0.164	0.226	0.042	0.169	0.051	0.362	0.521	0.329	0.312	0.061	0.147	0.128
600	chr1	157962117	158052563	+	0	NA	intron (NM_001286349, intron 1 of 12)	MIRb|SINE|MIR	44277	NM_018240	55243	Hs.272234	NM_018240	ENSG00000183853	KIRREL	NEPH1	kin of IRRE like (Drosophila)	protein-coding	nan	nan	2.289	0.054	0.180	0.074	0.115	1.661	0.216	0.094	0.138	0.050	0.318	0.187	0.097	1.051	1.684	0.846	2.505	0.264	nan	0.124	0.069	0.256	0.268	0.972	1.426	0.499	0.705	0.644	0.441	0.711	0.898	0.544	0.443	1.362	3.397	0.801	0.639	0.025	0.187	0.136	0.043	0.115	0.050	0.048	0.022	0.157	0.864
80	chr1	10883531	10905902	+	0	NA	Intergenic	Intergenic	-37983	NM_017766	54897	Hs.439894	NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding	1.202	0.948	nan	3.168	3.541	1.737	1.979	0.090	0.122	0.597	0.393	2.030	0.888	0.140	0.108	1.998	2.621	0.560	0.529	5.594	5.080	1.015	0.261	8.817	nan	0.334	nan	3.626	4.145	nan	0.526	0.726	1.256	0.523	0.421	0.642	1.244	1.654	0.927	0.239	0.669	0.093	0.606	1.979	2.030	0.376	0.598	0.615	0.272
336	chr1	61322879	61341413	+	0	NA	Intergenic	Intergenic	-40890	NR_110628	101926964	Hs.650459	NR_110628	ENSG00000231252	LOC101926964	-	uncharacterized LOC101926964	ncRNA	2.993	0.847	7.086	0.110	0.454	0.224	0.483	0.192	0.061	0.160	0.111	0.321	0.620	0.042	0.125	0.386	0.355	0.196	0.462	0.611	0.834	0.141	0.045	0.304	0.274	nan	nan	0.497	nan	4.807	5.314	0.239	0.407	0.875	0.447	0.230	0.624	0.787	0.573	0.095	0.086	0.262	0.100	0.483	0.321	1.427	0.093	0.137	0.180
6806	chr6	51396571	51403113	+	0	NA	Intergenic	Intergenic	-86826	NR_125840	101927082	Hs.730296	NR_125840		LOC101927082	-	uncharacterized LOC101927082	ncRNA	0.759	1.025	nan	0.194	0.229	0.098	0.347	0.123	0.074	0.144	0.100	0.311	0.556	0.049	0.128	0.471	0.511	1.011	2.272	0.424	0.661	0.164	0.045	0.355	0.195	0.200	0.336	0.207	0.276	0.177	0.067	0.215	0.354	0.592	0.678	0.279	0.439	0.222	0.351	0.026	0.013	0.120	5.260	0.347	0.311		0.016	0.091	0.057
457	chr1	114470866	114491689	+	0	NA	intron (NM_198268, intron 1 of 15)	AluSz|SINE|Alu	-9130	NR_110726	101928846	Hs.232534	NR_110725	ENSG00000235527	HIPK1-AS1	-	HIPK1 antisense RNA 1	ncRNA	nan	1.396	1.617	0.659	0.790	0.404	0.617	0.994	0.201	0.368	0.162	0.648	1.634	0.734	0.153	0.787	0.957	1.198	1.817	1.328	nan	1.360	0.556	1.919	1.931	1.586	2.218	1.068	1.673	1.562	1.377	0.885	1.796	0.376	0.313	2.408	4.231	0.924	0.708	0.248	0.855	0.054	0.505	0.617	0.648	0.207	0.341	0.490	1.395
1301	chr11	10919305	10931686	+	0	NA	Intergenic	Intergenic	45731	NR_034137	729013	Hs.726427	NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA	1.004	nan	1.294	0.597	0.485	0.298	0.887	1.632	0.247	0.165	0.161	0.482	5.230	0.079	0.082	nan	0.761	3.033	9.980	0.789	0.737	0.509	0.197	0.435	0.522	1.480	nan	0.873	0.931	1.380	1.658	0.619	1.030	0.443	0.543	0.378	1.085	0.788	nan	1.139	0.507	0.123	0.051	0.887	0.482	0.110	0.222	0.592	0.232
5247	chr22	35695062	35711274	+	0	NA	intron (NR_024194, intron 1 of 14)	MER113B|DNA|hAT-Charlie	7371	NR_024195	10043	Hs.474705	NM_005488	ENSG00000100284	TOM1	-	target of myb1 membrane trafficking protein	protein-coding	nan	2.229	1.132	0.813	0.775	0.536	0.433	0.536	0.130	0.329	0.168	0.954	1.524	0.375	0.066	1.068	1.762	0.792	nan	1.170	1.014	3.765	0.860	1.357	1.398	0.737	nan	2.578	3.568	1.992	1.624	0.598	0.778	3.652	4.047	0.725	nan	1.436	0.890	0.408	1.018	0.599	0.147	0.433	0.954	0.321	1.084	0.365	0.212
383	chr1	84762848	84771187	+	0	NA	promoter-TSS (NM_001134663)	promoter-TSS (NM_001134663)	-272	NM_001134663	148418	Hs.591445	NM_001010971	ENSG00000203943	SAMD13	HSD-41|HSD-42	sterile alpha motif domain containing 13	protein-coding	3.395	nan	nan	2.692	1.389	0.725	2.138	3.763	0.174	1.952	1.452	2.922	13.886	1.425	0.098	1.363	2.639	2.346	3.537	4.263	3.834	5.897	1.853	2.733	3.011	7.702	8.305	5.833	7.475	2.865	3.167	3.289	5.755	5.271	4.259	2.158	3.500	3.392	1.545	1.460	2.972	1.044	1.107	2.138	2.922	0.280	2.200	4.746	1.070
4945	chr20	36334752	36363796	+	0	NA	intron (NM_030877, intron 1 of 15)	L2b|LINE|L2	26917	NM_030877	56259	Hs.472667	NM_030877	ENSG00000132792	CTNNBL1	C20orf33|NAP|P14L|PP8304|dJ633O20.1	catenin beta like 1	protein-coding	1.457	1.323	1.412	0.180	0.450	0.211	0.406	0.171	0.111	0.109	0.140	0.185	0.412	0.112	0.102	0.680	0.612	0.193	0.318	0.548	nan	0.507	0.302	0.312	0.341	1.040	1.450	0.438	0.535	2.390	2.377	0.284	0.453	0.295	0.200	0.996	nan	1.582	0.811	0.048	0.312	0.134	0.101	0.406	0.185	0.406	0.046	0.099	0.478
2532	chr14	31018784	31031145	+	0	NA	Intergenic	L1P4|LINE|L1	-3365	NM_001308097	55632	Hs.509008	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding	2.656	1.281	1.472	1.448	0.964	0.622	0.743	1.368	0.300	0.546	0.414	1.180	2.460	0.940	0.160	0.828	0.817	1.507	2.075	1.961	1.942	2.180	1.316	2.266	2.154	2.017	2.561	1.538	2.079	2.805	2.513	0.618	1.374	4.613	5.510	1.827	2.967	1.092	0.838	1.432	0.835	1.445	0.861	0.743	1.180	0.314	1.061	0.386	1.037
3817	chr18	52980024	52995103	+	0	NA	intron (NM_001243228, intron 8 of 19)	intron (NM_001243228, intron 8 of 19)	1527	NM_001243235	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding	nan	1.867	1.301	0.245	1.833	0.913	0.483	2.063	0.106	1.038	0.769	0.889	0.364	1.519	0.063	2.968	3.000	4.535	5.279	5.249	4.990	2.037	0.780	1.419	1.496	2.613	3.138	1.050	1.026	10.404	10.980	0.872	1.424	5.899	6.671	2.815	3.068	7.507	3.500	0.265	0.387	1.420	3.526	0.483	0.889	1.028	1.045	0.746	1.371
2497	chr14	24834064	24849252	+	0	NA	exon (NM_001136022, exon 4 of 10)	exon (NM_001136022, exon 4 of 10)	3299	NM_001288802	4776	Hs.77810	NM_004554	ENSG00000100968	NFATC4	NF-AT3|NF-ATC4|NFAT3	nuclear factor of activated T-cells 4	protein-coding	nan	2.435	2.199	2.515	3.506	1.837	3.053	2.664	0.382	0.674	0.496	2.515	4.281	0.871	0.111	0.590	1.203	1.363	1.861	4.943	4.656	1.353	0.518	2.564	2.823	0.798	1.168	5.774	nan	5.250	4.888	1.341	2.756	1.850	1.411	1.297	2.426	1.345	0.747	2.484	7.645	0.589	2.332	3.053	2.515	1.444	1.576	2.773	0.810
92	chr1	14645395	14674069	+	0	NA	Intergenic	L1PA10|LINE|L1	-265481	NM_015209	23254	Hs.368823	NM_015209	ENSG00000189337	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding	0.600	1.161	nan	0.714	1.138	0.575	0.171	0.068	0.079	0.224	0.093	1.014	0.465	0.019	0.110	1.002	0.613	0.433	0.460	1.010	1.130	5.599	2.387	0.564	nan	0.192	nan	2.440	1.858	nan	0.157	0.717	0.635	0.263	0.323	0.184	0.318	2.063	0.998	0.078	0.183	0.027	0.008	0.171	1.014	0.037	0.188	0.369	0.026
5354	chr3	34214355	34229435	+	0	NA	Intergenic	Intergenic	381832	NM_001162429	10015	Hs.475896	NM_013374	ENSG00000170248	PDCD6IP	AIP1|ALIX|DRIP4|HP95	programmed cell death 6 interacting protein	protein-coding	0.873	3.042	3.609	2.307	0.199	0.128	0.501	0.084	0.050	0.991	0.635	0.340	7.776	0.021	0.084	0.247	0.221	0.456	0.656	3.664	3.553	6.440	2.201	0.171	0.162	0.138	nan	2.586	2.628	0.710	0.557	0.148	0.205	2.164	2.549	0.275	0.729	1.123	0.521	1.036	0.879	0.474	1.047	0.501	0.340	0.406	0.169	0.046	0.196
8413	chrX	135960750	135968630	+	0	NA	Intergenic	L2a|LINE|L2	-1751	NM_001164803	27316	Hs.380118	NM_002139	ENSG00000147274	RBMX	HNRNPG|HNRPG|MRXS11|RBMXP1|RBMXRT|RNMX|hnRNP-G	RNA binding motif protein, X-linked	protein-coding	3.468	1.991	2.927	2.229	3.969	1.728	2.162	0.846	0.121	0.973	0.262	1.744	5.391	1.398	0.047	3.402	3.387	2.854	4.064	4.904	4.841	3.772	1.508	5.827	5.794	3.079	4.233	3.615	5.830	9.095	9.385	2.581	4.295	2.951	2.974	6.152	8.252	1.839	1.151	1.227	1.728	0.581	1.416	2.162	1.744	0.526	0.854	1.334	2.860
3687	chr18	21655113	21670546	+	0	NA	intron (NM_001135993, intron 5 of 13)	intron (NM_001135993, intron 5 of 13)	-30488	NM_001292030	125488	Hs.128576	NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding	1.205	1.093	1.962	0.601	0.779	0.322	1.034	0.530	0.229	1.479	0.866	1.862	0.498	0.063	0.078	0.404	0.489	0.319	nan	0.819	0.887	8.626	2.533	0.155	0.207	0.333	0.495	1.171	0.894	0.909	0.733	0.189	0.270	3.600	5.161	0.427	1.435	2.205	1.754	0.080	0.184	0.651	0.190	1.034	1.862	0.251	2.256	0.038	0.302
1164	chr10	80825796	80834581	+	0	NA	intron (NM_020338, intron 1 of 24)	CpG-2984	1396	NM_020338	57178	Hs.193118	NM_020338	ENSG00000108175	ZMIZ1	MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10	zinc finger MIZ-type containing 1	protein-coding	2.695	3.012	5.868	1.896	2.390	1.184	1.294	1.868	0.237	0.706	0.567	4.135	7.274	1.429	0.070	5.424	8.270	7.319	6.443	4.560	3.626	3.476	1.147	9.307	8.884	1.474	2.147	4.044	5.573	1.144	1.382	2.039	4.530	1.023	0.948	1.411	2.431	1.305	0.832	2.476	1.709	0.325	2.119	1.294	4.135	0.837	1.063	1.769	0.684
5450	chr3	107798589	107825813	+	0	NA	Intergenic	MIR|SINE|MIR	-2266	NM_001777	961	Hs.446414	NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding	nan	nan	1.152	0.342	2.314	1.357	0.484	0.855	0.148	1.053	0.627	1.489	0.825	0.164	0.070	0.670	0.763	1.751	2.742	1.863	1.906	4.785	2.091	0.995	0.972	0.744	1.226	0.496	0.654	1.451	1.214	0.361	0.695	1.022	1.085	0.806	1.741	2.121	1.187	0.364	0.406	0.375	1.174	0.484	1.489	0.333	0.276	0.189	0.348
2824	chr15	28972721	28986407	+	0	NA	Intergenic	Intergenic	-3165	NR_026589	440253	Hs.558967	NR_026589		WHAMMP2	WHAMML2|WHDC1L2	WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 2	pseudo	nan	1.347	nan	0.476	0.775	0.467	1.018	0.144	0.059	0.805	0.543	1.440	2.596	0.529	0.061	2.215	2.497	3.609	2.751	1.560	1.832	0.202	0.050	2.044	1.953	1.531	1.881	1.884	2.216	nan	1.899	1.037	2.004	0.283	0.363	0.765	0.772	2.962	1.659	0.965	0.898	0.090	0.498	1.018	1.440	0.356	2.013	0.693	0.235
4597	chr2	173599470	173616306	+	0	NA	intron (NM_007023, intron 1 of 30)	intron (NM_007023, intron 1 of 30)	-6954	NR_026995	91149	Hs.711021	NR_026995	ENSG00000228016	RAPGEF4-AS1	-	RAPGEF4 antisense RNA 1	ncRNA	1.515	1.000	0.788	1.215	0.959	0.508	0.630	0.177	0.086	1.005	0.486	2.705	2.925	0.251	0.089	1.626	1.486	1.898	1.337	2.267	1.917	3.345	1.115	0.623	0.633	0.740	0.960	5.913	6.001	0.939	0.872	0.392	0.719	1.117	1.001	0.621	0.846	1.492	0.947	0.159	0.776	0.188	0.123	0.630	2.705	0.144	0.802	0.204	0.210
419	chr1	99989788	100020227	+	0	NA	Intergenic	Tigger2a|DNA|TcMar-Tigger	-51647	NR_125951	101928270	Hs.576048	NR_125951	ENSG00000224445	LINC01708	-	long intergenic non-protein coding RNA 1708	ncRNA	nan	nan	nan	0.067	0.409	0.186	0.152	0.542	0.093	0.067	0.076	0.389	0.410	0.153	0.127	0.380	0.212	0.720	0.934	0.585	nan	0.138	0.091	0.302	0.331	1.017	nan	nan	nan	nan	0.308	0.151	0.261	0.059	0.046	1.252	nan	0.738	0.684	0.656	0.105	0.013	0.021	0.152	0.389	0.071	0.036	0.078	2.203
2015	chr12	69256283	69272175	+	0	NA	intron (NM_001005502, intron 4 of 8)	intron (NM_001005502, intron 4 of 8)	61432	NM_001278462	4193	Hs.484551	NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|hdm2	MDM2 proto-oncogene	protein-coding	0.673	0.660	0.507	0.150	0.327	0.172	0.489	0.226	0.080	0.089	0.202	0.158	0.540	0.062	0.070	0.269	0.245	1.651	7.443	0.690	nan	0.246	0.075	0.520	0.528	0.314	0.650	0.493	0.631	0.780	0.631	0.217	0.334	0.101	0.099	0.183	0.357	0.859	0.684	0.028	0.182	0.012	0.200	0.489	0.158	0.060	0.051	0.117	0.062
7073	chr6	158226542	158267742	+	0	NA	intron (NM_016224, intron 1 of 17)	intron (NM_016224, intron 1 of 17)	2939	NM_016224	51429	Hs.191213	NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding	nan	0.813	2.102	0.392	0.718	0.358	1.733	0.673	0.117	0.153	0.092	1.019	1.127	0.418	0.141	4.852	6.328	2.900	3.551	1.126	nan	2.773	0.862	1.282	1.278	1.457	1.775	0.855	1.341	3.333	3.317	1.446	2.621	1.431	1.469	2.031	nan	0.383	0.357	1.425	0.658	0.349	1.672	1.733	1.019	0.397	0.317	1.038	1.227
4521	chr2	140860344	140896247	+	0	NA	Intergenic	MER65A|LTR|ERV1	465959	NR_106979	102465692		NR_106979	ENSG00000283506	MIR7157	hsa-mir-7157	microRNA 7157	ncRNA	6.722	nan	6.246	0.100	0.244	0.094	0.107	0.071	0.095	0.048	0.100	0.130	0.251	0.021	0.082	0.330	0.181	0.168	0.256	0.211	0.233	0.275	0.119	0.108	0.102	0.669	0.845	0.257	0.306	0.370	0.211	0.097	0.182	11.534	11.328	0.382	0.718	0.243	0.244	0.020	0.028	2.008	0.046	0.107	0.130	0.019	0.011	0.028	0.079
3208	chr16	85960894	85982383	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	19685	NR_106832	102466732		NR_106832	ENSG00000274134	MIR6774	hsa-mir-6774	microRNA 6774	ncRNA	nan	0.542	0.619	0.074	0.154	0.082	0.118	0.070	0.037	0.014	0.021	0.051	0.206	0.045	0.062	0.171	0.107	0.067	0.114	0.139	0.228	0.108	0.048	0.112	0.177	0.084	0.194	0.151	0.170	0.372	0.194	0.070	0.108	0.049	0.038	0.049	0.186	0.229	0.340	4.210	0.042	0.022	0.022	0.118	0.051	0.265	0.019	0.009	0.023
6836	chr6	65811541	65837731	+	0	NA	intron (NM_001292009, intron 12 of 43)	L2|LINE|L2	-186675	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding	nan	0.953	0.709	0.203	0.375	0.177	0.463	0.117	0.116	0.439	0.398	0.092	0.324	0.042	0.112	0.372	0.265	0.179	0.277	0.183	0.247	0.562	0.245	0.236	0.298	0.214	0.299	0.324	0.300	0.487	0.180	0.082	0.192	2.699	3.291	0.244	0.432	0.404	0.272	0.013	0.071	0.904	0.091	0.463	0.092	0.004	0.090	0.027	0.092
3839	chr18	55644480	55655570	+	0	NA	Intergenic	LTR81B|LTR|Gypsy	-61585	NM_015277	23327	Hs.185677	NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding	nan	1.122	0.943	0.276	2.160	1.318	1.824	0.081	0.044	0.098	0.074	3.632	1.010	0.049	0.126	0.563	0.639	0.533	0.781	2.630	3.165	9.675	4.102	1.023	1.133	0.274	0.398	4.359	3.874	0.441	0.318	0.436	1.305	2.145	2.735	0.349	0.691	nan	2.033	1.910	5.803	0.555	0.604	1.824	3.632	0.156	0.147	1.392	0.167
6706	chr6	31701493	31710091	+	0	NA	promoter-TSS (NM_001287593)	promoter-TSS (NM_001287593)	-697	NM_001287593	1192	Hs.414565	NM_001288	ENSG00000213719	CLIC1	G6|NCC27	chloride intracellular channel 1	protein-coding	nan	5.462	nan	7.791	8.144	3.749	5.777	4.108	0.672	3.001	1.144	7.835	16.876	4.067	0.180	5.591	5.536	5.078	7.901	nan	6.093	9.026	4.282	9.615	10.593	3.998	5.361	18.043	25.343	1.019	0.733	2.120	3.071	6.504	6.807	3.546	6.920	3.431	1.915	4.691	3.652	2.066	1.043	5.777	7.835	0.837	4.011	1.977	2.300
6398	chr5	107000689	107010473	+	0	NA	intron (NM_001962, intron 1 of 4)	CpG	1015	NM_001962	1946	Hs.288741	NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding	4.340	3.377	2.408	1.212	4.336	2.196	2.569	0.146	0.033	1.761	0.864	0.012	10.190	0.767	0.093	2.284	2.145	3.497	7.218	6.453	4.489	5.253	1.732	1.147	1.138	5.372	6.909	1.660	2.534	1.917	2.389	1.444	3.305	9.100	7.246	0.852	1.629	1.493	0.918	0.790	2.193	2.457	4.015	2.569	0.012	0.843	3.886	1.272	0.551
2289	chr13	43843008	43883169	+	0	NA	intron (NM_017993, intron 12 of 16)	L1PA16|LINE|L1	-159900	NR_120399	100874130	Hs.738887	NR_120399		ENOX1-AS2	-	ENOX1 antisense RNA 2	ncRNA	1.313	0.987	1.118	0.171	0.169	0.056	0.255	0.288	0.100	0.389	0.303	0.112	1.726	0.021	0.060	0.571	0.352	0.122	0.211	0.475	0.566	1.951	0.504	0.131	0.160	1.180	2.005	0.175	0.205	0.451	0.225	0.413	0.533	1.291	1.406	0.453	0.959	1.138	0.678	1.933	0.442	0.317	0.055	0.255	0.112	0.129	0.040	0.160	0.167
3283	chr17	12658549	12672296	+	0	NA	non-coding (NR_104607, exon 2 of 2)	non-coding (NR_104607, exon 2 of 2)	-27407	NM_001321166	9912	Hs.499758	NM_014859	ENSG00000006740	ARHGAP44	NPC-A-10|RICH2	Rho GTPase activating protein 44	protein-coding	0.619	0.414	0.458	1.369	4.547	1.858	0.066	0.043	0.058	0.058	0.052	0.095	0.257	0.025	0.045	0.437	0.398	0.187	nan	0.850	0.840	0.101	0.071	0.122	0.084	0.091	0.178	0.165	0.145	nan	0.549	0.074	0.087	0.045	0.036	0.153	0.212	0.100	0.131	0.024	0.020		0.006	0.066	0.095	0.007	0.030	0.021	0.030
2312	chr13	52478874	52498805	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	52755	NM_031290	83446	Hs.120573	NM_031290	ENSG00000123171	CCDC70	-	coiled-coil domain containing 70	protein-coding	0.751	nan	nan	0.399	0.187	0.081	0.103	0.090	0.049	0.094	0.074	0.504	1.188	0.022	0.098	0.668	1.072	0.195	0.489	0.912	0.835	nan	0.554	0.160	0.148	0.151	0.329	1.169	1.125	0.428	0.316	0.352	0.609	0.093	0.106	0.383	nan	0.276	0.245	0.211	2.542	0.014	0.124	0.103	0.504	0.053	0.025	0.129	0.167
3096	chr16	27715523	27737965	+	0	NA	intron (NM_015202, intron 13 of 27)	L1MB7|LINE|L1	165276	NM_015202	23247	Hs.460459	NM_015202	ENSG00000047578	KIAA0556	JBTS26	KIAA0556	protein-coding	1.010	0.613	nan	0.136	0.345	0.145	0.147	0.107	0.058	0.094	0.128	0.199	0.454	0.048	0.090	1.343	1.733	0.651	0.857	0.266	0.310	nan	0.287	0.314	0.428	0.361	0.590	0.814	0.871	3.990	3.849	0.260	0.352	0.118	0.165	1.423	4.330	0.528	0.517	0.207	0.192	0.055	0.126	0.147	0.199	0.376	0.317	0.062	2.122
3637	chr18	1990818	2004451	+	0	NA	Intergenic	Intergenic	573868	NM_022840	64863	Hs.126888	NM_022840	ENSG00000101574	METTL4	HsT661	methyltransferase like 4	protein-coding	1.335	1.218	1.143	0.175	0.163	0.059	0.113	0.089	0.157	0.046	0.131	0.272	nan	0.022	0.131	0.319	0.184	0.207	0.280	0.461	0.427	nan	0.356	0.327	0.345	0.223	nan	0.382	0.312	nan	0.345	0.108	0.106	0.185	0.240	2.398	6.756	nan	0.822	0.028	0.104	0.028	0.071	0.113	0.272	0.057	0.105	0.007	2.367
1030	chr10	13340100	13345749	+	0	NA	promoter-TSS (NM_001323082)	promoter-TSS (NM_001323082)	-794	NM_001323082	5264	Hs.498732	NM_006214	ENSG00000107537	PHYH	LN1|LNAP1|PAHX|PHYH1|RD	phytanoyl-CoA 2-hydroxylase	protein-coding	nan	3.128	3.093	3.241	2.484	1.528	1.337	3.612	0.622	1.113	0.601	1.937	4.624	2.945	0.163	1.945	2.841	2.702	4.377	2.752	1.896	12.669	5.727	3.226	3.394	2.151	2.736	5.748	9.005	1.001	0.965	0.716	1.616	0.713	0.699	0.634	0.995	1.552	0.969	1.231	0.759	0.068	0.895	1.337	1.937	0.410	1.774	0.567	0.264
365	chr1	71692206	71701185	+	0	NA	intron (NR_046217, intron 3 of 3)	MIRb|SINE|MIR	149688	NR_046217	100852410	Hs.535534	NR_046217	ENSG00000229956	ZRANB2-AS2	-	ZRANB2 antisense RNA 2 (head to head)	ncRNA	nan	0.745	0.944	0.119	0.709	0.302	0.867	0.132	0.036	0.139	0.145	0.284	0.273	0.085	0.124	0.254	0.232	0.443	0.369	0.619	nan	9.587	2.636	0.507	0.595	0.804	nan	0.303	0.390	0.410	0.176	0.255	0.385	0.374	0.394	0.433	1.604	0.499	0.543	0.117	0.076	0.063	0.071	0.867	0.284	0.011	0.011	0.071	0.165
2730	chr14	90841582	90851414	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-16829	NM_006888	801	Hs.282410	NM_006888	ENSG00000198668	CALM1	CALML2|CAMI|CPVT4|DD132|LQT14|PHKD|caM	calmodulin 1	protein-coding	6.267	3.128	nan	3.898	2.281	1.399	3.408	1.703	0.214	1.728	0.935	3.839	5.801	1.456	0.118	4.744	5.207	1.423	1.729	8.208	6.187	6.876	3.892	6.999	7.322	3.572	4.668	5.014	8.778	5.812	6.013	3.177	3.637	4.554	3.639	3.440	2.800	nan	2.555	3.965	5.213	0.824	1.640	3.408	3.839	1.182	1.955	2.498	0.841
3255	chr17	6914526	6919411	+	0	NA	intron (NR_037715, intron 2 of 3)	intron (NR_037715, intron 2 of 3)	-1088	NM_001142798	124944	Hs.511801	NM_174893	ENSG00000258315	C17orf49	BAP18|HEPIS	chromosome 17 open reading frame 49	protein-coding	5.286	3.126	3.063	2.968	4.794	2.608	3.749	3.976	0.361	1.725	0.555	5.723	8.916	12.281	0.594	6.472	6.969	7.952	11.973	8.644	9.186	6.304	4.325	8.911	9.212	4.160	5.022	7.430	11.273	3.421	3.226	3.994	5.663	2.674	3.504	6.378	7.897	2.373	1.289	4.021	3.920	0.798	1.415	3.749	5.723	1.683	5.900	1.052	2.880
4632	chr2	182848444	182856751	+	0	NA	exon (NM_001261424, exon 2 of 6)	exon (NM_001261424, exon 2 of 6)	2046	NM_001261425	151242	Hs.10941	NM_001080545	ENSG00000150722	PPP1R1C	IPP5	protein phosphatase 1 regulatory inhibitor subunit 1C	protein-coding	1.075	1.206	0.890	0.076	1.054	0.663	0.354	0.244	0.019	0.151	0.116	0.247	0.383	0.039	0.066	0.683	0.465	0.230	0.245	0.408	0.521	2.092	0.745	0.487	0.540	nan	5.115	0.709	0.719	0.607	0.253	0.134	0.249	0.494	0.516	0.390	nan	0.864	0.543	1.903	0.044	0.035	0.221	0.354	0.247	0.058	0.037	0.060	0.252
2021	chr12	71353881	71366183	+	0	NA	Intergenic	Intergenic	-45448	NM_002849	5801	Hs.506076	NM_002849	ENSG00000153233	PTPRR	EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ	protein tyrosine phosphatase, receptor type R	protein-coding	nan	1.042	0.561	0.128	0.217	0.065	0.313	1.631	0.133	0.099	0.126	0.117	0.438		0.105	0.266	0.131	0.214	0.362	0.366	0.472	0.109	0.122	0.362	0.401	3.388	4.166	nan	0.733	0.505	0.255	0.130	0.150	0.044	0.086	0.208	0.353	nan	0.527		0.133	0.007	0.127	0.313	0.117	0.032	0.042	0.032	0.081
3430	chr17	44437208	44454120	+	0	NA	Intergenic	Intergenic	-4515	NR_033799	728806	Hs.735097	NR_033799		NSFP1	NSFP	N-ethylmaleimide-sensitive factor pseudogene 1	pseudo	3.443	2.704	nan	1.492	4.452	2.303	0.975	0.522	0.216	1.910	1.057	3.256	3.883	1.081	0.069	1.762	1.577	2.624	3.315	1.442	nan	2.894	0.911	12.648	13.011	1.841	2.215	2.323	nan	3.636	3.509	1.573	2.526	4.025	5.405	3.049	4.386	3.150	1.602	0.872	2.921	1.336	0.769	0.975	3.256	0.471	2.021	1.064	1.250
4590	chr2	170422444	170443047	+	0	NA	Intergenic	Intergenic	-2314	NM_024622	79675	Hs.529276	NM_024622	ENSG00000138399	FASTKD1	-	FAST kinase domains 1	protein-coding	2.290	1.480	1.705	1.131	1.233	0.547	1.058	0.722	0.205	0.734	0.509	1.260	2.839	0.680	0.106	1.507	1.342	1.924	2.846	1.712	1.530	1.993	0.930	3.512	3.560	1.758	2.224	1.381	2.080	3.291	3.132	1.147	1.852	1.118	1.167	3.851	6.009	1.087	0.638	0.741	1.064	0.168	0.419	1.058	1.260	0.435	0.349	0.542	1.935
3318	chr17	19076594	19107319	+	0	NA	Intergenic	AluSx|SINE|Alu	-26019	NM_001291904	79999	Hs.677375	NM_024934	ENSG00000197665	LOC79999	-	uncharacterized LOC79999	protein-coding	1.878	1.179	1.212	1.056	3.705	1.848	2.627	0.626	0.219	0.455	0.383	1.648	3.509	2.756	0.254	3.165	3.517	1.707	nan	6.231	5.647	2.436	2.529	3.220	3.139	2.262	2.753	3.623	5.087	nan	3.177	1.982	2.091	1.311	1.447	2.621	2.735	0.749	0.425	0.629	1.077	0.419	0.999	2.627	1.648	0.844	1.585	0.524	0.821
5193	chr22	21102990	21113913	+	0	NA	intron (NM_058004, intron 23 of 54)	AluJo|SINE|Alu	-19932	NM_000185	3053	Hs.474270	NM_000185	ENSG00000099937	SERPIND1	D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10	serpin family D member 1	protein-coding	0.883	nan	0.992	0.443	0.238	0.250	0.248	0.158	0.147	0.225	0.175	0.155	0.726	0.089	0.087	1.842	2.631	0.943	0.910	0.487	0.490	0.920	0.200	0.446	0.465	0.766	1.135	1.165	1.289	0.576	0.510	0.220	0.379	0.123	0.123	0.459	1.004	4.009	1.935	0.813	0.155	0.026	0.203	0.248	0.155	0.170	0.397	0.087	0.292
570	chr1	155176128	155180181	+	0	NA	promoter-TSS (NM_002455)	promoter-TSS (NM_002455)	-336	NM_198883	4580	Hs.490874	NM_002455	ENSG00000173171	MTX1	MTX|MTXN	metaxin 1	protein-coding	nan	nan	5.782	5.056	5.533	3.206	7.245	2.302	0.718	3.754	1.544	7.490	24.545	8.642	0.263	7.602	10.786	5.677	8.384	11.997	nan	9.149	5.991	7.128	7.842	7.434	8.961	6.982	14.412	9.051	10.491	7.082	11.432	7.852	4.747	12.482	11.775	3.999	1.880	4.824	6.429	1.581	2.860	7.245	7.490	3.503	7.095	3.324	2.713
3123	chr16	33606681	33620748	+	0	NA	Intergenic	Intergenic	41870	NR_130772	104644205	Hs.742548	NR_130771		ENPP7P13	DUNQU1	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 13	pseudo	0.748	0.511	0.437	0.104	0.150	0.092	0.063	0.048	0.061	0.146	0.030	0.042	0.415	0.062	0.093	0.289	0.195	0.330	0.373	0.246	0.336	12.994	5.171	0.194	0.179	0.297	0.601	0.142	0.194	0.328	0.125	0.119	0.158	0.139	0.133	0.118	0.113	0.134	0.243	0.016	0.019	0.014	0.023	0.063	0.042	0.042	0.050	0.014	0.017
5191	chr22	20209604	20259378	+	0	NA	intron (NM_023004, intron 1 of 1)	intron (NM_023004, intron 1 of 1)	2243	NR_031618	100302118		NR_031618	ENSG00000221039	MIR1286	MIRN1286|hsa-mir-1286|mir-1286	microRNA 1286	ncRNA	1.860	nan	1.240	0.204	0.447	0.212	0.713	0.083	0.058	0.176	0.126	0.254	0.786	0.114	0.066	2.288	3.750	0.503	0.578	0.655	0.563	1.423	0.499	1.161	1.216	1.024	1.395	0.690	1.099	1.612	1.906	0.700	0.785	0.607	0.525	0.838	1.624	1.829	1.170	0.585	0.165	0.142	0.162	0.713	0.254	0.557	0.182	0.267	0.524
3761	chr18	41204604	41217412	+	0	NA	Intergenic	L2|LINE|L2	-353393	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin 4	protein-coding	nan	1.049	0.743	0.357	3.557	2.245	4.974	0.059	0.037	0.647	0.327	0.215	0.968	0.008	0.059	0.425	0.189	0.232	0.348	2.526	2.108	5.637	2.588	0.100	0.069	0.155	0.286	0.296	0.327	0.386	0.138	0.081	0.154	6.045	9.158	0.149	nan	2.117	1.381	0.139	0.797	1.757	0.087	4.974	0.215	0.061	0.008	0.035	0.029
252	chr1	41090445	41129816	+	0	NA	intron (NM_014747, intron 2 of 7)	L2b|LINE|L2	21194	NM_014747	9783	Hs.654808	NM_014747	ENSG00000117016	RIMS3	NIM3|RIM3	regulating synaptic membrane exocytosis 3	protein-coding	12.410	0.675	nan	0.129	0.640	0.286	15.194	0.133	0.140	0.263	0.187	0.782	0.675	0.113	0.129	0.576	0.940	0.196	0.328	1.901	1.578	0.575	0.202	0.369	0.383	0.519	nan	nan	1.231	0.552	0.453	0.820	nan	0.287	0.269	0.655	1.538	1.716	1.115	0.755	0.396	0.043	0.496	15.194	0.782	0.138	0.131	0.341	0.387
6684	chr6	26671776	26692012	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-21914	NM_001242799	79692	Hs.126280	NM_024639	ENSG00000181315	ZNF322	HCG12|ZNF322A|ZNF388|ZNF489	zinc finger protein 322	protein-coding	1.179	1.122	nan	5.157	0.588	0.198	0.397	0.170	0.167	0.784	0.540	1.640	nan	0.102	0.241	0.684	0.518	0.285	nan	1.212	1.298	nan	0.753	0.560	0.565	0.384	0.473	8.631	6.048	0.537	0.304	0.341	0.413	0.709	1.046	0.384	0.969	3.417	1.971	0.055	0.893	0.094	0.055	0.397	1.640	0.019	1.741	0.059	0.142
883	chr1	223947098	223961994	+	0	NA	intron (NM_001748, intron 16 of 20)	AluSg|SINE|Alu	54427	NM_001748	824	Hs.350899	NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding	1.374	nan	1.017	3.998	0.777	0.366	0.488	0.317	0.108	1.490	0.509	0.110	1.090	0.094	0.108	0.465	0.565	0.627	0.952	0.598	nan	7.220	2.379	0.543	0.578	0.317	0.562	1.698	1.336	0.319	0.233	0.140	0.195	1.230	1.218	0.482	1.129	2.529	1.106	0.075	0.210	0.351	0.096	0.488	0.110	0.046	0.300	0.037	0.266
7864	chr8	107092024	107099458	+	0	NA	Intergenic	Intergenic	-23010	NR_125796	102723356	Hs.571413	NR_125796		ZFPM2-AS1	-	ZFPM2 antisense RNA 1	ncRNA	2.738	nan	nan	0.981	0.393	0.129	1.478	1.462	0.129	0.022	0.178	1.064	3.409	0.111	0.071	0.386	0.209	0.392	1.272	0.546	0.489	nan	0.145	0.651	0.617	5.610	nan	1.950	nan	nan	0.312	0.189	0.304	0.159	0.642	0.749	nan	1.507	1.249	0.149	0.039	0.013	0.118	1.478	1.064	0.261	1.398	0.053	0.315
4610	chr2	177016001	177030191	+	0	NA	Intergenic	Intergenic	-5709	NM_006898	3232	Hs.93574	NM_006898	ENSG00000128652	HOXD3	HOX1D|HOX4|HOX4A|Hox-4.1	homeobox D3	protein-coding	1.192	0.984	0.647	0.446	0.825	0.316	1.193	0.079	0.028	1.950	1.105	1.851	3.690	0.038	0.081	3.190	3.483	1.223	1.674	2.523	1.940	1.778	0.902	2.891	2.905	2.828	3.532	4.762	7.870	2.892	3.335	2.975	4.085	1.402	1.166	0.257	0.453	1.286	0.769	1.010	0.057	0.262	0.707	1.193	1.851	0.375	0.529	1.549	0.070
6058	chr4	159077470	159097580	+	0	NA	intron (NM_016613, intron 2 of 4)	intron (NM_016613, intron 2 of 4)	6193	NM_016613	51313	Hs.567498	NM_016613	ENSG00000164125	FAM198B	AD021|AD036|C4orf18|ENED	family with sequence similarity 198 member B	protein-coding	nan	1.308	0.583	0.158	0.150	0.150	0.077	1.553	0.088	0.140	0.050	0.218	0.290	4.860	0.165	0.221	0.139	0.368	0.418	0.132	0.171	1.453	0.534	1.647	1.660	0.702	0.768	0.374	0.388	0.315	0.120	0.134	0.226	0.183	0.196	0.359	0.716	0.532	0.412	0.022	0.066	0.033	0.125	0.077	0.218	0.014	0.025	0.049	0.204
6667	chr6	24301467	24336234	+	0	NA	intron (NM_016356, intron 2 of 9)	L1PB4|LINE|L1	-38281	NM_181337	353219	Hs.697888	NM_181337	ENSG00000146049	KAAG1	RU2AS	kidney associated antigen 1	protein-coding	0.938	0.805	nan	0.153	0.278	0.115	0.251	0.137	0.140	0.143	0.115	0.351	nan	2.471	0.155	0.433	0.334	3.676	nan	0.294	0.364	nan	0.175	0.262	0.255	0.253	0.380	0.282	0.348	0.370	0.135	0.148	0.253	0.137	0.137	0.296	0.437	0.514	0.629	0.055	0.108	0.014	0.070	0.251	0.351	0.026	0.020	0.060	0.047
6199	chr5	17985160	17999498	+	0	NA	Intergenic	Intergenic	184946	NR_134287	646241	Hs.407197	NR_134286		LOC646241	-	uncharacterized LOC646241	ncRNA	nan	nan	nan	0.134	1.556	0.827	0.622	0.213	0.167	5.519	3.488	0.083	nan	0.045	0.083	0.392	0.318	0.335	0.269	0.798	1.152	8.353	5.027	0.122	0.115	nan	3.891	0.204	0.246	0.732	0.427	0.100	0.245	5.049	5.156	0.503	nan	5.854	2.917	0.023	0.087	0.824	0.011	0.622	0.083	0.202	0.284	0.035	0.200
3825	chr18	53559589	53563281	+	0	NA	intron (NR_110755, intron 3 of 3)	L2c|LINE|L2	25995	NR_110755	101927273	Hs.434335	NR_110755	ENSG00000260930	LINC01416	-	long intergenic non-protein coding RNA 1416	ncRNA	nan	0.939	1.248	2.271	1.606	0.780	0.316	1.080	0.198	0.042	0.131	6.648	0.501	0.347	0.119	0.732	0.523	0.158	0.362	0.275	0.724	7.782	5.042	22.999	25.483	0.353	0.511	7.610	10.431	0.468	0.309	5.545	7.773	5.139	4.343	2.362	2.043	nan	1.184	0.061	0.240	0.860	0.121	0.316	6.648	0.106	2.006	2.718	1.246
3618	chr17	79668167	79681719	+	0	NA	TTS (NM_002949)	TTS (NM_002949)	-4323	NM_012140	1468	Hs.548187	NM_012140	ENSG00000183048	SLC25A10	DIC	solute carrier family 25 member 10	protein-coding	3.622	3.401	3.778	3.160	3.935	1.919	3.231	1.465	0.378	2.459	1.417	2.256	5.060	2.190	0.136	5.617	6.278	4.207	5.579	3.999	3.675	6.360	1.985	5.046	4.972	nan	3.853	4.032	5.782	5.355	6.601	2.627	5.175	4.308	4.036	3.808	4.516	nan	1.261	1.052	2.053	1.353	1.237	3.231	2.256	0.753	3.078	0.926	1.480
3275	chr17	8876650	8882664	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	-10628	NM_001142633	23533	Hs.278901	NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.688	0.555	0.585	0.029	0.229	0.106	1.940	0.038	0.134	0.079	0.187	0.030	0.269	0.054	0.280	1.456	2.383	11.973	7.549	0.264	0.350	0.644	0.271	0.584	0.569	0.141	0.294	0.172	0.177	0.415	0.131	0.298	0.911	0.106	0.141	0.256	0.295	0.894	0.379		0.015	0.016	0.040	1.940	0.030	0.032		0.262	0.041
2463	chr13	113539487	113549825	+	0	NA	Intergenic	Intergenic	78296	NR_034002	100289410	Hs.667436	NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA	0.987	nan	1.816	3.858	0.938	0.481	2.339	0.036	0.031	1.059	0.459	2.167	4.550	0.294	0.063	2.068	3.004	0.586	0.832	2.740	2.239	7.174	2.068	0.894	0.811	0.060	0.119	3.354	4.515	0.511	0.350	1.047	1.712	4.085	3.796	0.301	0.427	0.493	0.284	1.392	2.327	0.589	0.269	2.339	2.167	0.488	0.477	1.672	0.023
2493	chr14	23979245	23987485	+	0	NA	intron (NR_046051, intron 3 of 4)	intron (NR_046051, intron 3 of 4)	1346	NR_046052	79178	Hs.655179	NM_024328	ENSG00000259431	THTPA	THTP|THTPASE	thiamine triphosphatase	protein-coding	4.744	1.386	3.146	0.633	0.901	0.543	0.195	0.118	0.135	0.401	0.351	1.682	1.288	0.036	0.096	0.648	1.238	0.112	0.170	7.065	6.563	0.974	0.341	0.308	0.279	2.200	2.985	0.588	nan	9.533	9.053	0.311	0.520	1.628	0.895	0.161	0.217	2.451	1.127	6.838	0.075	0.568	0.134	0.195	1.682	1.560	1.058	0.060	0.031
105	chr1	16928066	16957216	+	0	NA	Intergenic	MIRb|SINE|MIR	-2541	NM_017940	55672	Hs.467587	NM_017940	ENSG00000219481	NBPF1	AB13|AB14|AB23|AD2|NBG|NBPF	neuroblastoma breakpoint family member 1	protein-coding	4.458	2.798	nan	1.308	1.624	0.842	1.288	0.429	0.286	0.820	0.702	0.628	4.258	1.194	0.407	2.172	2.878	1.477	2.244	4.395	4.998	2.234	0.743	3.016	nan	3.027	nan	3.254	4.261	nan	1.252	1.390	1.997	0.903	1.072	1.974	3.795	6.538	3.514	4.632	1.863	0.180	0.345	1.288	0.628	0.821	0.642	0.419	0.742
8330	chr9	138232915	138273047	+	0	NA	Intergenic	MIR|SINE|MIR	17886	NM_173520	157927	Hs.559511	NM_173520		C9orf62	-	chromosome 9 open reading frame 62	protein-coding	nan	0.816	0.805	0.063	0.254	0.146	0.070	0.074	0.064	0.066	0.076	0.083	1.835	0.046	0.061	0.225	0.310	0.066	0.116	0.393	0.422	nan	0.027	0.051	0.048	0.717	0.992	0.118	0.138	0.929	0.735	0.195	0.178	0.946	1.336	0.102	0.137	0.304	0.338	4.119	0.171	0.219	0.032	0.070	0.083	1.121	0.490	0.027	0.021
5976	chr4	102118073	102145211	+	0	NA	intron (NM_001130691, intron 1 of 12)	MIR|SINE|MIR	30387	NR_107033	102465868		NR_107033	ENSG00000273882	MIR8066	hsa-mir-8066	microRNA 8066	ncRNA	0.748	nan	nan	0.902	1.494	0.732	0.189	0.268	0.136	0.723	0.470	0.250	0.407	0.060	0.088	0.346	0.218	0.504	nan	0.392	0.517	0.930	0.358	0.370	0.437	1.040	nan	0.603	0.798	1.331	1.065	0.121	0.209	1.471	2.562	0.372	nan	0.551	0.410	0.025	0.313	0.436	0.100	0.189	0.250	0.127	0.183	0.051	0.191
6532	chr5	162520852	162528923	+	0	NA	Intergenic	L2a|LINE|L2	-339690	NM_199246	900	Hs.79101	NM_004060	ENSG00000113328	CCNG1	CCNG	cyclin G1	protein-coding	nan	0.665	0.416	0.032	0.150	0.112	0.009	0.075	0.020	0.116	0.060	0.015	0.193	0.053	0.090	1.026	0.535	8.550	1.521	0.142	0.140	0.069	0.053	0.120	0.055	0.803	1.002	0.127	0.137	0.570	0.145	0.226	0.444	0.050	0.109	0.084	0.156	0.196	0.221	0.007	0.011		0.019	0.009	0.015		0.038	0.061	0.137
4500	chr2	133102678	133114104	+	0	NA	Intergenic	L1ME1|LINE|L1	-1849	NR_135203	339742	Hs.98178	NR_135203		FAM201B	-	family with sequence similarity 201 member B	ncRNA	nan	3.033	nan	1.221	2.157	0.954	1.485	0.545	0.250	0.674	0.447	1.466	8.192	1.599	0.170	3.625	4.610	1.479	2.261	3.552	3.119	1.824	0.658	1.888	1.965	1.924	2.456	3.406	nan	3.063	3.634	1.839	2.973	0.251	0.173	1.427	2.198	3.125	1.645	3.035	1.424	0.093	0.557	1.485	1.466	0.153	4.017	1.213	0.995
2380	chr13	95120197	95160127	+	0	NA	intron (NM_001322185, intron 1 of 7)	intron (NM_001322185, intron 1 of 7)	-8226	NM_001922	1638	Hs.301865	NM_001922	ENSG00000080166	DCT	TRP-2|TYRP2	dopachrome tautomerase	protein-coding	1.609	1.336	1.470	0.066	0.286	0.158	0.329	0.084	0.068	0.106	0.091	0.156	0.479	0.024	0.073	0.500	0.317	0.206	0.267	0.365	0.441	0.678	0.287	0.118	0.102	0.401	0.568	0.349	0.328	1.097	1.148	0.201	0.339	0.218	0.211	3.311	7.793	0.343	0.252	0.245	0.125	0.024	0.135	0.329	0.156	0.235	0.079	0.082	2.590
3549	chr17	73004042	73032577	+	0	NA	TTS (NM_001303265)	TTS (NM_001303265)	9550	NM_001303265	3396	Hs.407955	NM_001545	ENSG00000167862	MRPL58	DS-1|DS1|ICT1|MRP-L58	mitochondrial ribosomal protein L58	protein-coding	3.276	2.078	4.130	1.837	1.966	0.996	1.146	0.942	0.299	1.665	0.645	1.326	4.167	1.096	0.147	2.745	3.669	1.212	1.839	2.096	1.905	4.391	3.016	1.441	1.328	nan	3.194	2.934	4.418	4.516	4.382	2.354	3.133	2.678	2.458	3.039	4.740	nan	1.073	0.538	0.985	0.496	0.939	1.146	1.326	0.565	1.637	1.834	1.423
408	chr1	94439529	94447932	+	0	NA	Intergenic	Intergenic	-68576	NM_001308253	2730	Hs.315562	NM_002061	ENSG00000023909	GCLM	GLCLR	glutamate-cysteine ligase modifier subunit	protein-coding	nan	nan	3.428	0.119	0.326	0.210	0.149	0.118		0.223	0.139	0.157	0.481	0.038	0.082	0.576	1.162	0.248	0.273	0.560	nan	1.462	0.244	0.256	0.294	0.957	nan	2.020	1.666	nan	5.482	0.519	0.701	0.305	0.263	4.377	12.806	1.735	1.149	0.013	0.065	0.045	0.067	0.149	0.157	0.231	0.605	0.411	5.518
5410	chr3	78770519	78793921	+	0	NA	intron (NM_002941, intron 5 of 30)	intron (NM_002941, intron 5 of 30)	286389	NM_001145845	6091	Hs.744218	NM_002941	ENSG00000169855	ROBO1	DUTT1|SAX3	roundabout guidance receptor 1	protein-coding	1.054	1.412	1.051	0.509	2.415	1.202	0.158	0.245	0.069	1.125	0.937	0.583	1.243	0.083	0.091	0.239	0.232	2.034	nan	0.976	1.069	3.289	1.732	0.142	0.122	0.602	0.851	0.959	1.003	3.252	2.594	0.173	0.406	2.388	3.081	1.725	nan	0.842	0.369	0.019	0.190	0.728	0.200	0.158	0.583	0.125	0.808	0.131	1.966
7241	chr7	30917904	30962040	+	0	NA	Intergenic	Intergenic	-11337	NM_001329872	358	Hs.76152	NM_000385	ENSG00000240583	AQP1	AQP-CHIP|CHIP28|CO	aquaporin 1 (Colton blood group)	protein-coding	1.591	0.835	2.109	0.198	0.268	0.174	0.347	0.121	0.062	0.104	0.109	0.777	3.121	0.084	0.127	0.799	1.261	0.651	3.020	0.544	nan	0.509	0.198	0.911	0.979	0.460	nan	nan	nan	0.527	0.548	0.515	0.638	0.183	0.317	0.495	nan	0.459	0.491	1.063	0.187	0.041	0.097	0.347	0.777	0.248	0.081	0.197	0.330
7527	chr7	145145843	145152794	+	0	NA	Intergenic	Intergenic	-616172	NM_001042482	27010	Hs.660232	NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding	0.839	0.509	1.127	0.314	6.118	3.042	0.038	0.082	0.071	1.128	0.908	0.792	0.220	0.016	0.106	0.392	0.324	0.136	0.191	0.710	0.931	7.492	6.151	0.140	0.070	0.256	0.525	0.252	0.242	0.222	0.111	0.114	0.200	2.446	4.728	0.082	0.198	3.371	nan	0.031	0.076	0.476	0.057	0.038	0.792		0.014	0.057	
7434	chr7	111272278	111281680	+	0	NA	Intergenic	MER67C|LTR|ERV1	-74406	NM_001244606	83943	Hs.655722	NM_032549	ENSG00000184903	IMMP2L	IMMP2L-IT1|IMP2|IMP2-LIKE	inner mitochondrial membrane peptidase subunit 2	protein-coding	nan	0.799	1.209	0.159	0.238	0.154	0.069	0.241	0.238	0.123	0.151	0.140	0.288	0.104	0.152	0.333	0.224	0.178	0.318	0.250	0.342	0.201	0.070	0.257	0.228	0.223	0.293	0.187	0.186	0.758	0.449	0.161	0.237	0.120	0.107	3.004	10.282	0.434	0.581	0.076	0.123		0.084	0.069	0.140	0.082	0.048	0.031	3.050
2777	chr14	102548382	102565543	+	0	NA	intron (NM_001017963, intron 2 of 11)	AluY|SINE|Alu	-3450	NM_005348	3320	Hs.525600	NM_005348	ENSG00000080824	HSP90AA1	EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2	heat shock protein 90 alpha family class A member 1	protein-coding	3.200	2.010	2.341	2.634	2.602	1.356	2.555	1.246	0.320	1.080	0.620	2.056	4.393	2.019	0.127	1.752	2.010	1.970	3.467	5.216	5.072	2.134	1.292	2.364	2.458	1.614	2.549	3.762	5.115	4.217	3.731	2.599	5.175	2.201	2.149	1.996	1.992	1.418	0.801	4.400	1.753	0.464	1.426	2.555	2.056	0.516	0.810	0.578	0.802
3601	chr17	78414124	78433629	+	0	NA	Intergenic	Intergenic	26528	NM_002522	4884	Hs.514556	NM_002522	ENSG00000171246	NPTX1	NP1	neuronal pentraxin 1	protein-coding	2.005	1.491	8.243	1.488	1.847	1.017	2.784	0.647	0.190	0.670	0.398	1.853	2.379	0.844	0.105	3.049	2.996	1.125	1.567	3.213	3.514	2.781	1.361	1.278	1.236	nan	4.206	2.409	3.892	4.659	5.502	1.568	1.779	1.561	1.739	1.992	2.489	nan	1.042	0.351	0.822	0.275	1.648	2.784	1.853	0.952	3.310	0.362	0.816
5301	chr22	46824080	46866022	+	0	NA	intron (NM_014246, intron 2 of 34)	(TCCA)n|Simple_repeat|Simple_repeat	88016	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	ADGRC1|CDHF9|FMI2|HFMI2|ME2	cadherin EGF LAG seven-pass G-type receptor 1	protein-coding	0.703	1.347	nan	0.109	0.294	0.164	1.767	0.094	0.089	0.094	0.078	0.334	0.857	0.102	0.087	0.328	0.341	0.195	0.338	0.529	0.470	1.130	0.278	0.420	0.421	0.104	0.263	0.659	1.064	0.346	0.205	0.295	0.237	0.383	0.824	0.068	0.120	0.423	0.457	2.945	0.043	0.044	0.098	1.767	0.334	0.171	0.153	0.056	0.018
4956	chr20	42832455	42850663	+	0	NA	intron (NR_038337, intron 1 of 2)	intron (NR_038337, intron 1 of 2)	1833	NR_038337	100505783	Hs.159049	NR_038337	ENSG00000223891	OSER1-AS1	-	OSER1 antisense RNA 1 (head to head)	ncRNA	nan	nan	1.586	1.815	1.041	0.467	0.963	1.685	0.191	0.577	0.232	0.835	2.089	0.793	0.141	2.091	2.087	2.058	3.755	1.730	1.626	nan	1.962	2.458	2.670	1.453	1.843	2.126	3.763	nan	1.936	1.024	1.971	0.327	0.715	1.648	1.925	0.657	0.479	0.186	0.703	0.031	0.954	0.963	0.835	0.359	0.307	0.477	0.448
7049	chr6	152527506	152531494	+	0	NA	intron (NM_182961, intron 124 of 145)	intron (NM_182961, intron 124 of 145)	-22987	NM_001347701	23345	Hs.12967	NM_015293	ENSG00000131018	SYNE1	8B|ARCA1|C6orf98|CPG2|EDMD4|MYNE1|Nesp1|SCAR8|dJ45H2.2	spectrin repeat containing nuclear envelope protein 1	protein-coding	nan	0.931	0.748	2.348	0.478	0.324	1.155	0.130	0.124	1.545	0.429	0.270	1.682	0.028	0.097	0.556	0.232	0.294	0.415	0.521	nan	14.162	15.188	0.498	0.449	0.151	0.269	1.201	1.899	0.470	0.357	0.161	0.193	0.916	0.354	0.193	nan	0.450	0.315	0.042	0.200		0.059	1.155	0.270	0.049	0.511		0.060
6458	chr5	137085748	137091922	+	0	NA	3' UTR (NM_006805, exon 1 of 1)	3' UTR (NM_006805, exon 1 of 1)	1204	NM_006805	10949	Hs.96996	NM_006805	ENSG00000177733	HNRNPA0	HNRPA0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	4.810	3.495	nan	3.993	7.893	4.398	2.878	3.297	0.417	2.239	0.807	7.244	12.750	4.375	0.161	4.439	4.129	7.309	9.617	8.466	7.878	6.626	4.124	16.328	17.170	3.289	4.413	7.311	9.775	9.176	9.640	6.027	9.755	6.958	8.076	5.871	5.178	2.276	1.169	2.733	4.448	1.385	2.781	2.878	7.244	1.018	3.189	2.896	2.077
3808	chr18	48302264	48333501	+	0	NA	Intergenic	Intergenic	28552	NM_001127176	83876	Hs.30495	NM_031939	ENSG00000134042	MRO	B29|C18orf3	maestro	protein-coding	nan	0.901	0.784	0.132	0.360	0.169	1.188	0.096	0.052	0.095	0.110	0.180	0.485	0.053	0.064	0.476	0.449	0.270	0.342	0.616	0.798	3.587	0.730	0.210	0.196	0.194	0.325	0.299	0.283	0.429	0.259	0.257	0.445	0.535	0.711	0.412	nan	1.725	1.381	0.083	0.221	0.055	0.091	1.188	0.180	0.047	0.023	0.234	0.329
2307	chr13	51596349	51617852	+	0	NA	intron (NR_003923, intron 4 of 16)	MIRb|SINE|MIR	33193	NR_003923	2974	Hs.411573	NM_004129	ENSG00000123201	GUCY1B2	GC-SB2	guanylate cyclase 1 soluble subunit beta 2 (pseudogene)	pseudo	0.931	nan	nan	0.149	0.288	0.142	0.116	0.144	0.041	0.392	0.714	1.529	1.543	0.020	0.078	0.595	0.325	0.129	0.094	1.385	1.437	nan	0.357	0.141	0.144	3.443	3.603	2.377	2.459	0.677	0.438	0.275	0.314	1.854	2.159	0.445	nan	0.911	0.318	0.033	0.119	0.943	0.497	0.116	1.529	0.054	0.274	0.069	0.178
7039	chr6	149185087	149201005	+	0	NA	intron (NM_005715, intron 1 of 7)	MIRc|SINE|MIR	92774	NR_038408	100128176	Hs.557541	NR_038408		UST-AS1	-	UST antisense RNA 1	ncRNA	nan	0.684	nan	0.348	0.165	0.051	1.535	0.179	0.041	0.099	0.114	0.080	0.926	0.054	0.078	0.365	0.305	0.531	1.029	0.446	0.478	4.857	1.254	0.281	0.306	0.090	0.163	0.976	0.774	0.490	0.261	0.341	0.667	0.193	0.139	0.210	0.238	0.528	0.438	0.488	0.509	0.048	0.174	1.535	0.080	0.215	0.017	0.493	0.091
2706	chr14	79981982	80018824	+	0	NA	intron (NM_001105250, intron 2 of 6)	intron (NM_001105250, intron 2 of 6)	254721	NR_073546	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding	nan	0.749	0.864	0.100	0.408	0.220	0.321	0.211	0.153	0.144	0.107	0.052	0.681	0.062	0.114	0.392	0.236	0.309	0.681	0.694	0.795	0.116	0.078	3.365	3.708	1.221	1.569	0.455	0.540	0.684	0.376	0.147	0.232	0.713	0.751	0.106	0.230	0.940	0.858	0.190	0.228	0.262	0.310	0.321	0.052	0.179	0.038	0.035	0.064
6609	chr6	10308778	10317439	+	0	NA	Intergenic	Intergenic	-99443	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA	0.870	5.239	0.817	0.082	1.492	0.946	3.009	0.112	0.180	0.816	0.430	0.686	0.146	0.062	0.111	0.480	0.398	0.699	1.665	0.501	0.401	4.984	1.498	0.258	0.203	0.150	0.273	0.141	0.109	0.302	0.102	0.313	0.276	5.595	6.044	0.101	0.228	1.016	0.788	0.013	0.643	1.521	1.343	3.009	0.686	0.022	0.481	0.023	0.043
7826	chr8	99054716	99059464	+	0	NA	intron (NM_000989, intron 3 of 4)	intron (NM_000989, intron 3 of 4)	728	NM_000989	6156	Hs.400295	NM_000989	ENSG00000156482	RPL30	L30	ribosomal protein L30	protein-coding	nan	2.221	6.411	6.598	4.953	2.672	3.024	2.584	0.373	1.487	1.014	6.006	11.135	2.537	0.125	4.521	4.190	6.114	nan	8.130	7.863	11.631	4.713	9.335	9.892	3.765	5.016	14.466	17.345	6.272	6.444	4.465	8.388	3.913	4.548	7.485	7.352	3.802	2.035	1.843	2.977	0.699	1.297	3.024	6.006	0.561	3.416	1.637	2.189
5973	chr4	96457219	96482732	+	0	NA	exon (NM_003728, exon 1 of 16)	exon (NM_003728, exon 1 of 16)	386	NM_003728	8633	Hs.388565	NM_003728	ENSG00000182168	UNC5C	UNC5H3	unc-5 netrin receptor C	protein-coding	0.672	0.675	0.708	0.082	0.154	0.044	0.259	0.399	0.069	0.062	0.088	0.047	0.513	0.166	0.057	0.442	0.244	0.246	0.397	0.248	0.280	0.034	0.033	0.111	0.134	0.499	0.766	0.191	0.165	0.612	0.475	0.108	0.196	0.067	0.066	2.080	4.247	0.099	0.116	0.013	0.036	0.011	0.109	0.259	0.047	0.004	0.008	0.034	1.339
5444	chr3	104519638	104540961	+	0	NA	Intergenic	L1MA6|LINE|L1	-555258	NM_001243283	214	Hs.591293	NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding	nan	nan	0.770	0.204	3.817	1.957	0.108	0.106	0.136	2.754	1.291	1.631	0.212	0.035	0.065	0.358	0.311	0.245	0.270	0.474	0.646	6.986	2.746	0.217	0.233	0.502	0.677	0.585	0.497	0.934	0.458	0.213	0.348	1.237	1.043	0.775	1.387	1.800	0.926	0.048	0.093	0.316	0.094	0.108	1.631	0.069	0.128	0.154	0.715
5502	chr3	119808766	119817106	+	0	NA	5' UTR (NM_001146156, exon 1 of 11)	5' UTR (NM_001146156, exon 1 of 11)	328	NM_001146156	2932	Hs.445733	NM_002093	ENSG00000082701	GSK3B	-	glycogen synthase kinase 3 beta	protein-coding	6.976	nan	4.492	4.862	7.865	4.079	4.120	4.761	0.454	2.599	1.245	5.349	7.097	2.877	0.133	5.672	5.592	5.665	8.153	10.198	nan	12.481	8.298	15.248	15.896	nan	6.349	5.468	9.168	13.025	12.223	4.526	7.359	4.040	4.300	8.975	8.279	3.140	1.684	4.781	4.957	0.858	4.211	4.120	5.349	1.900	1.980	2.556	2.377
2133	chr12	109025631	109037981	+	0	NA	Intergenic	Tigger8|DNA|TcMar-Tigger	2220	NR_039717	100616240		NR_039717	ENSG00000257221	MIR4496	-	microRNA 4496	ncRNA	1.197	1.225	nan	0.178	0.357	0.273	0.994	0.487	0.181	0.127	0.100	0.147	1.735	0.123	0.148	2.466	3.267	0.456	0.560	1.472	1.252	0.600	0.160	0.643	0.563	0.320	0.655	3.929	3.683	2.047	2.441	2.950	4.032	0.211	0.277	0.835	1.805	1.407	1.074	1.638	4.618	0.030	0.039	0.994	0.147	0.697	5.278	4.095	0.298
8118	chr9	35657163	35659292	+	0	NA	promoter-TSS (NR_003051)	promoter-TSS (NR_003051)	-60	NM_001195217	203260	Hs.745107	NM_174923	ENSG00000159884	CCDC107	PSEC0222	coiled-coil domain containing 107	protein-coding	5.423	11.730	7.738	8.096	8.877	4.790	5.155	6.536	0.939	3.885	2.585	6.307	18.781	6.173	0.205	5.040	8.006	9.235	12.572	14.280	15.681	15.705	13.400	11.919	12.059	8.546	8.825	7.587	13.947	11.448	13.159	10.245	12.423	9.877	12.219	8.165	6.284	8.179	4.502	7.432	6.075	1.953	4.242	5.155	6.307	1.184	2.622	2.279	1.448
8312	chr9	135867777	135872754	+	0	NA	Intergenic	Intergenic	16167	NM_001135031	8328	Hs.553160	NM_004188	ENSG00000165702	GFI1B	BDPLT17|ZNF163B	growth factor independent 1B transcriptional repressor	protein-coding	nan	0.393	0.589	0.223	0.284	0.207	0.093	0.046	0.096	0.127	0.067	0.120	0.637	0.044	0.157	2.364	3.982	11.883	7.549	0.566	0.579	nan	0.179	3.422	3.442	0.070	0.145	0.780	0.737	0.455	0.242	2.994	5.918	0.119	0.190	0.057	0.142	0.313	0.394	0.346	0.054	0.051		0.093	0.120	0.081	0.081	4.410	0.050
4969	chr20	45587490	45611468	+	0	NA	intron (NM_005244, intron 1 of 15)	L1MC5|LINE|L1	76216	NM_172110	2139	Hs.472877	NM_005244	ENSG00000064655	EYA2	EAB1	EYA transcriptional coactivator and phosphatase 2	protein-coding	nan	nan	1.444	0.431	2.149	1.171	0.533	0.141	0.080	0.237	0.113	0.624	0.963	0.031	0.109	1.642	1.858	0.782	0.913	1.147	0.961	nan	0.451	0.758	0.869	1.104	1.529	3.111	1.991	nan	4.329	0.728	0.758	1.295	1.291	2.213	6.169	0.721	0.414	0.411	0.202	0.358	0.096	0.533	0.624	1.007	1.290	0.202	1.432
6529	chr5	159688000	159717330	+	0	NA	intron (NR_131769, intron 3 of 7)	intron (NR_131769, intron 3 of 7)	36942	NM_001308173	79616	Hs.14070	NM_024565	ENSG00000135083	CCNJL	-	cyclin J like	protein-coding	1.153	nan	2.214	0.384	1.700	0.851	0.192	0.181	0.099	0.323	0.182	1.538	0.317	0.081	0.090	0.303	0.392	0.286	0.497	0.573	0.581	0.847	0.285	0.156	0.172	0.591	0.879	1.221	1.007	1.714	1.661	0.103	0.217	0.548	0.620	1.184	3.366	0.579	0.457	0.245	0.110	0.140	0.389	0.192	1.538	0.336	1.026	0.031	1.757
4722	chr2	219816417	219833803	+	0	NA	exon (NM_003936, exon 1 of 1)	exon (NM_003936, exon 1 of 1)	760	NM_003936	8941	Hs.158460	NM_003936	ENSG00000171450	CDK5R2	NCK5AI|P39|p39nck5ai	cyclin dependent kinase 5 regulatory subunit 2	protein-coding	nan	2.683	nan	2.605	2.446	1.246	2.781	0.056	0.080	1.862	0.837	3.275	6.943	0.517	0.101	2.796	4.500	0.119	0.282	2.982	2.266	4.466	1.372	0.140	0.142	1.581	2.281	5.324	nan	3.267	3.243	1.138	1.821	2.524	2.575	4.352	6.901	1.414	0.873	2.736	2.071	0.627	1.237	2.781	3.275	1.033	2.584	0.875	1.263
8337	chr9	139419704	139442081	+	0	NA	intron (NM_017617, intron 2 of 33)	intron (NM_017617, intron 2 of 33)	9346	NM_017617	4851	Hs.495473	NM_017617	ENSG00000148400	NOTCH1	AOS5|AOVD1|TAN1|hN1	notch 1	protein-coding	nan	1.361	3.095	0.825	0.427	0.218	0.721	0.709	0.173	0.035	0.056	0.292	1.069	0.500	0.072	1.877	3.011	2.002	3.227	1.557	1.309	nan	0.190	1.492	1.654	0.193	0.346	0.558	0.697	2.278	2.094	1.313	2.481	0.347	0.360	0.457	0.647	0.420	0.314	1.351	0.417	0.047	1.044	0.721	0.292	0.718	0.164	0.800	0.182
431	chr1	107680731	107731786	+	0	NA	intron (NM_001330665, intron 2 of 6)	intron (NM_001330665, intron 2 of 6)	15567	NM_001113228	22854	Hs.133046	NM_014917	ENSG00000162631	NTNG1	Lmnt1	netrin G1	protein-coding	1.052	nan	nan	0.370	1.337	0.709	0.745	0.113	0.063	0.154	0.076	0.094	4.391	0.049	0.095	0.308	0.198	0.510	0.467	0.560	nan	4.050	1.839	0.260	0.249	6.905	7.722	nan	nan	0.448	0.221	0.248	0.271	0.787	0.859	0.434	nan	0.548	0.493	0.746	0.050	0.161	0.156	0.745	0.094	0.097	0.203	0.032	0.181
7191	chr7	20272993	20290860	+	0	NA	Intergenic	L2a|LINE|L2	24726	NR_134569	100506098	Hs.59203	NR_134567	ENSG00000233834	LOC100506098	-	uncharacterized LOC100506098	ncRNA	0.980	1.251	1.047	0.242	0.310	0.215	0.215	0.092	0.072	0.078	0.126	0.125	0.635	0.125	0.181	0.584	0.375	1.747	nan	0.301	0.352	0.850	0.344	0.198	0.237	0.526	0.826	0.704	0.606	0.340	0.170	0.182	0.227	0.290	0.444	0.370	nan	0.455	0.557	0.240	0.051	0.053	0.031	0.215	0.125	0.038	0.046	0.085	0.152
3487	chr17	58668067	58681413	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2804	NM_003620	8493	Hs.286073	NM_003620	ENSG00000170836	PPM1D	PP2C-DELTA|WIP1	protein phosphatase, Mg2+/Mn2+ dependent 1D	protein-coding	4.550	2.963	2.659	3.806	3.382	1.626	1.593	1.918	0.324	1.814	1.163	2.898	5.392	1.754	0.151	4.023	3.769	2.477	3.398	5.108	4.797	4.122	2.008	nan	8.605	2.811	3.274	nan	nan	7.065	7.033	2.110	3.861	3.819	4.459	5.284	6.786	2.131	1.120	1.424	2.562	1.167	1.789	1.593	2.898	0.675	1.363	1.270	1.946
7134	chr7	3556390	3566054	+	0	NA	intron (NM_152744, intron 1 of 44)	intron (NM_152744, intron 1 of 44)	220142	NM_152744	221935	Hs.653013	NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding	1.454	1.015	1.584	0.607	0.942	0.465	0.177	0.102	0.084	1.982	1.027	1.083	nan	0.078	0.139	0.705	0.401	0.296	nan	0.893	1.021	7.573	3.759	0.319	0.324	0.195	0.176	nan	2.165	0.569	0.329	0.324	0.438	2.208	3.174	0.155	0.199	2.042	1.144	0.038	0.075	0.531	0.377	0.177	1.083	0.841	0.727	0.113	0.128
4729	chr2	222014052	222055216	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	402444	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding	nan	0.796	0.873	0.279	0.456	0.202	0.240	0.089	0.111	0.184	0.108	0.316	nan	0.049	0.117	0.501	0.302	0.293	0.491	0.286	0.285	0.174	0.079	0.555	0.540	5.043	5.487	0.538	nan	0.590	0.363	0.141	0.215	0.222	0.265	0.655	nan	0.290	0.264	0.192	0.240	0.051	0.141	0.240	0.316	0.113	0.155	0.053	0.429
4329	chr2	48266150	48278122	+	0	NA	Intergenic	Intergenic	-139204	NM_001190274	80204	Hs.352677	NM_012167	ENSG00000138081	FBXO11	FBX11|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding	1.117	nan	0.982	0.088	0.236	0.153	0.153	0.125	0.081	0.105	0.097	0.060	0.243	0.081	0.141	0.293	0.188	0.198	0.344	nan	0.395	0.165	0.061	0.380	0.404	0.389	0.504	0.223	0.282	1.736	1.277	0.132	0.220	0.045	0.055	3.911	8.812	nan	0.411	0.078	0.120	0.008	0.026	0.153	0.060	0.048	0.042	0.033	3.250
129	chr1	21577541	21597596	+	0	NA	intron (NM_001113349, intron 3 of 17)	intron (NM_001113349, intron 3 of 17)	18615	NM_001113347	1889	Hs.195080	NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding	1.530	1.139	nan	0.682	0.400	0.216	0.890	0.436	0.145	0.278	0.196	0.267	0.894	0.120	0.097	0.351	0.658	0.335	0.605	1.611	1.664	0.598	0.197	0.426	0.439	0.843	1.396	2.146	2.199	0.928	1.086	0.277	0.239	0.183	0.253	0.746	1.645	0.913	0.591	4.167	0.698	0.076	0.162	0.890	0.267	0.281	0.136	0.040	0.648
6077	chr4	170164281	170179817	+	0	NA	intron (NM_020870, intron 2 of 11)	L2a|LINE|L2	20200	NM_020870	57630	Hs.301804	NM_020870	ENSG00000154447	SH3RF1	POSH|RNF142|SH3MD2	SH3 domain containing ring finger 1	protein-coding	nan	nan	1.109	0.186	0.427	0.277	0.304	1.366	0.155	0.202	0.100	0.296	0.379	0.063	0.110	0.247	0.249	4.480	nan	0.269	0.324	0.124	0.040	0.277	0.207	1.277	1.793	0.698	0.670	1.740	1.711	0.230	0.362	1.165	1.196	0.910	2.430	0.749	0.517	0.054	0.032	0.345	0.154	0.304	0.296	0.201	0.215	0.145	0.829
4662	chr2	200294981	200328702	+	0	NA	intron (NR_134967, intron 2 of 4)	intron (NR_134967, intron 2 of 4)	10978	NR_134967	23314	Hs.516617	NM_015265	ENSG00000119042	SATB2	GLSS	SATB homeobox 2	protein-coding	0.836	nan	0.904	4.319	1.720	0.946	1.295	0.413	0.100	0.767	0.617	1.090	5.354	0.503	0.085	0.626	0.579	1.108	1.062	3.744	3.100	0.337	0.136	1.054	1.055	1.233	1.713	1.625	2.233	0.585	0.484	0.535	0.874	1.789	2.391	0.738	1.128	1.041	0.575	0.033	2.853	0.488	1.103	1.295	1.090	0.130	1.263	0.264	0.247
6033	chr4	141005471	141025569	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	59713	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding	1.012	1.370	0.741	0.680	2.136	1.086	0.714	0.709	0.128	0.422	0.330	0.933	1.515	0.011	0.086	0.290	0.304	0.409	0.672	0.766	0.851	2.580	0.834	0.156	0.126	1.308	1.821	1.119	1.194	1.217	1.002	0.360	0.533	2.024	2.944	0.639	1.404	1.184	0.714	0.478	0.446	0.388	0.173	0.714	0.933	0.106	0.646	0.079	0.332
926	chr1	233242116	233251670	+	0	NA	intron (NM_014801, intron 21 of 33)	MIRb|SINE|MIR	160305	NR_138027	84284	Hs.642715	NM_032324	ENSG00000135778	NTPCR	C1orf57|HCR-NTPase	nucleoside-triphosphatase, cancer-related	protein-coding	1.217	1.331	0.814	0.374	0.380	0.217	1.987	3.025	0.269	0.182	0.276	0.525	0.526	0.069	0.114	0.658	0.860	2.522	9.688	0.614	0.478	nan	0.209	0.308	0.429	0.505	0.701	nan	3.556	0.432	0.178	0.142	0.181	0.099	0.185	0.464	0.589	nan	0.550	0.146	0.083	0.010	0.117	1.987	0.525	0.061	0.905	0.011	0.238
1083	chr10	27527875	27533191	+	0	NA	promoter-TSS (NM_001271512)	promoter-TSS (NM_001271512)	535	NM_001301251	91452	Hs.530597	NM_145698	ENSG00000107897	ACBD5	-	acyl-CoA binding domain containing 5	protein-coding	5.117	7.898	7.283	1.917	6.681	3.894	2.621	8.776	0.877	3.247	1.436	5.115	10.119	4.163	0.116	7.421	8.620	8.304	10.691	7.280	5.423	8.986	2.697	8.217	8.758	7.404	9.638	6.024	8.416	6.382	6.775	1.852	3.491	2.926	2.882	3.774	5.142	3.297	1.818	3.144	2.790	0.434	2.954	2.621	5.115	1.554	3.213	1.794	1.859
6137	chr5	2684440	2714584	+	0	NA	Intergenic	Intergenic	52257	NM_001134222	153572	Hs.282089	NM_033267	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding	0.342	0.669	0.777	0.118	0.435	0.266	0.239	0.163	0.096	0.073	0.131	2.602	0.471	0.029	0.099	0.313	0.141	0.305	nan	0.882	0.978	0.092	0.060	0.045	0.035	0.156	0.304	nan	0.154	nan	0.319	0.150	0.197	0.053	0.093	0.056	0.124	0.177	nan	0.791	0.262	0.028	0.082	0.239	2.602	0.071	0.032	0.039	0.008
3024	chr16	2168111	2186937	+	0	NA	intron (NM_001009944, intron 1 of 45)	intron (NM_001009944, intron 1 of 45)	-5596	NR_039741	100616258		NR_039741	ENSG00000265867	MIR4516	mir-4516	microRNA 4516	ncRNA	2.388	nan	5.207	2.021	1.307	0.622	2.319	1.188	0.440	1.623	0.770	0.908	3.048	1.960	0.134	1.813	2.896	0.564	0.854	1.480	1.395	nan	0.968	1.630	1.662	1.269	nan	2.136	3.178	1.583	1.831	0.685	1.231	0.993	0.915	1.299	2.142	1.162	0.581	0.709	2.156	0.309	0.509	2.319	0.908	0.560	2.209	0.576	0.433
1792	chr12	6637131	6651394	+	0	NA	promoter-TSS (NM_001256799)	promoter-TSS (NM_001256799)	-123	NM_001256799	2597	Hs.544577	NM_002046	ENSG00000111640	GAPDH	G3PD|GAPD|HEL-S-162eP	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	3.648	nan	nan	6.085	4.022	2.037	3.513	0.590	0.101	1.417	1.214	3.102	7.876	3.257	0.175	1.957	2.198	4.045	5.741	nan	6.736	9.389	2.939	3.120	3.209	2.508	3.559	3.339	4.150	3.983	5.612	1.797	2.929	3.776	3.850	3.440	nan	1.163	0.750	3.384	3.270	0.959	3.627	3.513	3.102	3.594	1.296	1.393	1.618
662	chr1	172500712	172503982	+	0	NA	promoter-TSS (NM_014283)	promoter-TSS (NM_014283)	89	NM_001282750	51430	Hs.204559	NM_014283	ENSG00000094975	SUCO	C1orf9|CH1|OPT|SLP1	SUN domain containing ossification factor	protein-coding	8.442	nan	7.666	5.736	4.950	2.889	3.779	5.723	0.444	3.766	2.073	3.834	15.573	3.480	0.175	6.347	9.390	14.526	18.988	15.265	9.524	9.308	3.714	17.587	19.422	6.722	7.031	8.860	12.450	6.673	8.318	6.741	13.773	5.962	6.160	5.806	8.567	3.798	2.191	4.343	9.272	0.964	3.279	3.779	3.834	1.220	3.041	3.994	2.379
168	chr1	28831348	28847698	+	0	NA	intron (NM_001048199, intron 3 of 11)	AluYc|SINE|Alu	4453	NR_004404	26768		NR_004404		SNORA73B	105A|E1c|RNU105A|RNU17B|U17B	small nucleolar RNA, H/ACA box 73B	snoRNA	3.175	1.860	nan	2.773	2.749	1.475	1.868	1.148	0.467	1.249	0.885	1.106	4.016	3.584	0.273	3.860	3.910	3.344	5.438	3.530	4.049	3.509	1.463	6.419	6.390	3.462	5.548	4.857	5.179	6.545	7.191	1.983	4.067	1.614	1.724	13.038	9.523	2.160	1.169	1.122	1.190	0.285	0.742	1.868	1.106	0.531	1.242	1.124	3.639
6180	chr5	13993756	14014102	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-59340	NM_001369	1767	Hs.212360	NM_001369	ENSG00000039139	DNAH5	CILD3|DNAHC5|HL1|KTGNR|PCD	dynein axonemal heavy chain 5	protein-coding	nan	nan	nan	3.336	0.244	0.160	0.592	0.693	0.175	0.902	0.547	0.311	nan	1.462	0.153	1.402	1.645	1.014	1.069	1.391	1.215	0.311	0.131	0.476	0.479	nan	1.723	6.511	9.196	1.132	0.964	0.719	1.343	0.321	0.269	0.256	nan	2.695	1.773	1.953	1.047	0.019	0.258	0.592	0.311	0.301	2.029	1.218	0.056
3447	chr17	48127637	48141225	+	0	NA	intron (NM_002204, intron 1 of 25)	intron (NM_002204, intron 1 of 25)	1099	NM_002204	3675	Hs.265829	NM_002204	ENSG00000005884	ITGA3	CD49C|FRP-2|GAP-B3|GAPB3|ILNEB|MSK18|VCA-2|VL3A|VLA3a	integrin subunit alpha 3	protein-coding	1.310	2.719	nan	0.219	3.669	1.712	0.576	2.275	0.382	0.962	0.313	1.848	4.278	0.798	0.101	4.353	6.749	1.545	1.916	2.366	nan	3.166	0.854	0.542	0.605	0.284	0.516	4.483	nan	1.192	0.940	0.801	1.364	2.732	2.298	0.372	0.640	2.401	1.330	2.600	1.959	0.950	0.146	0.576	1.848	0.701	1.620	0.505	0.109
8007	chr8	146027442	146057125	+	0	NA	Intergenic	L1MA4|LINE|L1	-10620	NM_001282796	7553	Hs.493218	NM_003416	ENSG00000147789	ZNF7	HF.16|KOX4|zf30	zinc finger protein 7	protein-coding	1.863	0.859	nan	2.516	1.405	0.821	0.961	0.478	0.191	0.566	0.355	14.417	2.574	0.383	0.104	1.087	1.575	0.831	1.371	nan	10.317	nan	0.846	2.965	3.131	0.630	1.070	1.842	2.467	0.823	0.738	1.301	1.891	1.097	0.923	0.759	0.944	1.908	0.993	0.931	1.968	0.236	0.808	0.961	14.417	0.240	1.160	0.599	0.304
3156	chr16	66783383	66786540	+	0	NA	promoter-TSS (NR_133569)	promoter-TSS (NR_133569)	564	NM_006141	1783	Hs.369068	NM_006141	ENSG00000135720	DYNC1LI2	DNCLI2|LIC2	dynein cytoplasmic 1 light intermediate chain 2	protein-coding	nan	nan	3.802	5.708	4.629	2.484	4.961	2.533	0.288	1.190	0.842	6.136	6.555	3.086	0.098	7.342	6.157	4.471	6.597	7.606	8.423	6.415	5.357	17.199	18.301	2.505	nan	5.733	8.837	8.856	8.557	5.003	7.794	3.150	3.284	5.011	3.769	4.195	1.822	2.238	2.732	0.391	1.755	4.961	6.136	1.331	2.468	0.877	1.096
2728	chr14	89762720	89773481	+	0	NA	intron (NM_001085471, intron 3 of 6)	AluSg4|SINE|Alu	115354	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding	1.847	2.482	nan	3.215	0.979	0.439	1.107	1.688	0.179	1.730	0.577	2.941	8.259	0.090	0.142	0.280	0.193	0.704	0.548	5.346	4.193	1.616	1.951	0.421	0.459	1.425	1.994	5.289	11.284	0.766	0.420	0.120	0.198	0.475	0.553	0.295	0.454	nan	2.571	5.191	2.991	0.142	0.148	1.107	2.941	0.022	0.969	0.073	0.093
3992	chr19	18127569	18142521	+	0	NA	Intergenic	Intergenic	16068	NM_001286826	27106	Hs.515249	NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding	2.420	1.317	1.263	1.649	0.479	0.242	0.311	0.437	0.195	0.357	0.152	0.184	0.587	0.152	0.090	0.291	0.169	0.566	1.231	0.562	0.612	0.728	0.229	0.241	0.192	1.704	2.781	2.890	3.807	3.727	2.917	0.234	0.161	0.853	1.123	1.338	2.515	2.115	1.123	0.145	0.164	0.211	0.053	0.311	0.184	1.453	1.757	0.026	0.767
3439	chr17	46360755	46378685	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-1989	NR_131239	105371807	Hs.661105	NR_131239	ENSG00000235300	THRA1/BTR	-	uncharacterized LOC105371807	ncRNA	0.831	1.144	nan	0.123	2.409	1.386	0.058	0.085	0.099	0.871	0.431	0.374	0.299	0.345	0.136	1.237	2.976	0.153	0.156	0.433	nan	1.838	0.618	0.442	0.533	0.182	0.259	2.697	nan	0.544	0.207	0.256	0.502	2.376	1.312	0.150	0.274	4.035	2.087	0.027	0.083	0.613	0.035	0.058	0.374	0.011	0.089	0.098	0.048
124	chr1	19921625	19926380	+	0	NA	promoter-TSS (NR_135054)	promoter-TSS (NR_135054)	531	NM_001204082	440574	Hs.466662	NM_001032363	ENSG00000173436	MINOS1	C1orf151|MIO10|Mic10	mitochondrial inner membrane organizing system 1	protein-coding	4.305	2.921	nan	4.890	2.313	1.486	2.197	2.078	0.171	1.000	0.448	1.411	9.125	3.082	0.119	3.125	4.170	5.356	8.188	5.736	5.121	5.290	2.008	8.455	nan	3.660	nan	12.109	16.748	nan	5.430	2.491	4.318	3.025	2.754	6.179	4.906	2.642	1.935	1.780	3.839	0.440	1.037	2.197	1.411	1.059	1.809	1.759	1.277
1429	chr11	59375008	59385329	+	0	NA	intron (NM_002556, intron 1 of 13)	intron (NM_002556, intron 1 of 13)	3449	NM_002556	5007	Hs.597091	NM_002556	ENSG00000110048	OSBP	OSBP1	oxysterol binding protein	protein-coding	1.607	1.514	1.540	2.058	3.425	1.761	0.868	0.789	0.189	1.139	0.514	3.281	2.483	0.999	0.108	2.647	2.882	2.039	2.981	4.627	4.541	4.808	1.714	5.267	5.341	1.853	2.124	2.497	3.403	1.953	1.369	5.911	9.160	2.189	2.933	1.067	1.862	1.560	0.952	1.084	2.126	0.340	1.430	0.868	3.281	0.471	0.511	8.325	0.615
4259	chr2	25193473	25196997	+	0	NA	promoter-TSS (NM_001198559)	promoter-TSS (NM_001198559)	254	NR_034113	729723	Hs.436366	NR_034113	ENSG00000224165	DNAJC27-AS1	-	DNAJC27 antisense RNA 1	ncRNA	8.969	4.139	7.614	7.359	8.798	6.322	7.171	3.644	0.567	4.404	2.425	4.293	22.594	8.383	0.199	6.879	8.621	11.135	15.694	15.937	14.721	12.264	9.783	36.496	39.244	7.240	8.964	14.280	22.201	9.895	11.630	8.383	12.023	7.160	6.443	10.857	9.917	5.576	3.236	4.121	8.094	1.149	5.550	7.171	4.293	3.233	4.804	4.566	3.781
2536	chr14	32669577	32674003	+	0	NA	TTS (NR_125730).3	TTS (NR_125730).3	539	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA	9.131	2.929	4.082	8.754	5.105	2.583	4.945	7.477	0.403	2.009	1.330	4.637	11.638	2.697	0.210	2.739	4.640	2.407	4.064	11.040	11.388	6.827	4.794	7.786	8.358	5.226	6.304	6.829	11.417	18.173	18.684	4.275	5.578	6.924	6.015	7.915	7.605	4.733	3.724	2.283	3.100	0.560	5.071	4.945	4.637	1.605	3.951	0.892	2.757
5856	chr4	26856535	26864035	+	0	NA	TTS (NR_134675)	TTS (NR_134675)	1581	NR_134675	105374546	Hs.548859	NR_134673		LOC105374546	-	uncharacterized LOC105374546	ncRNA	2.200	2.423	nan	6.439	3.307	1.665	2.234	1.568	0.156	2.578	1.334	5.200	8.265	2.387	0.124	4.359	5.113	3.764	5.216	6.249	4.495	5.922	1.471	4.762	4.986	2.490	2.776	3.388	5.642	3.749	4.536	1.727	4.298	1.972	2.010	2.102	3.336	nan	2.103	2.255	6.263	0.456	3.684	2.234	5.200	0.576	1.497	1.880	1.317
4988	chr20	48749979	48790394	+	0	NA	non-coding (NR_027889, exon 1 of 7)	non-coding (NR_027889, exon 1 of 7)	149	NM_001162505	387521	Hs.744839	NM_199129	ENSG00000240849	TMEM189	KUA	transmembrane protein 189	protein-coding	nan	nan	1.155	1.002	0.847	0.504	1.005	1.001	0.368	0.346	0.253	1.122	1.493	2.412	0.160	2.656	3.700	1.161	2.325	1.222	1.104	nan	0.662	1.635	1.684	1.041	1.629	2.259	2.762	nan	1.002	1.014	1.654	0.366	0.653	0.654	1.071	1.169	0.803	0.644	0.435	0.059	0.366	1.005	1.122	0.250	1.201	0.465	0.268
6875	chr6	96461436	96466192	+	0	NA	promoter-TSS (NM_006581)	promoter-TSS (NM_006581)	-31	NM_006581	10690	Hs.49117	NM_006581	ENSG00000172461	FUT9	Fuc-TIX	fucosyltransferase 9	protein-coding	nan	4.065	nan	0.495	0.222	0.102	6.839	0.064		2.303	0.968	5.183	13.357	0.115	0.103	4.072	6.861	0.154	0.262	16.570	12.612	nan	0.534	2.336	2.623	6.463	7.021	4.864	7.674	nan	7.908	1.438	2.300	10.129	7.399	0.406	0.338	3.266	1.693	1.999	5.115	2.185	0.017	6.839	5.183	1.729	3.053	0.763	0.619
3611	chr17	79222580	79227535	+	0	NA	exon (NM_138570, exon 14 of 14)	exon (NM_138570, exon 14 of 14)	11946	NM_001086521	284184	Hs.356545	NM_001086521	ENSG00000224877	NDUFAF8	C17orf89	NADH:ubiquinone oxidoreductase complex assembly factor 8	protein-coding	2.894	2.324	6.976	3.165	3.254	1.292	3.841	0.076	0.097	3.335	2.048	4.065	7.797	0.151	0.096	2.732	4.379	0.387	0.582	9.185	6.847	1.275	0.598	0.723	0.649	nan	3.132	5.621	5.098	7.273	8.950	1.356	2.503	5.185	4.019	0.678	1.348	nan	2.345	1.144	4.213	1.805	0.402	3.841	4.065	0.254	7.233	1.598	0.324
2483	chr14	22916299	22925196	+	0	NA	Intergenic	MER113A|DNA|hAT-Charlie	137396	NM_001344	1603	Hs.82890	NM_001344	ENSG00000129562	DAD1	OST2	defender against cell death 1	protein-coding	nan	0.735	4.396	0.103	0.146	0.195	0.229	0.197	0.168	0.017	0.094	0.076	0.266	0.073	0.173	0.174	0.121	0.168	0.244	0.243	0.259	0.116	0.040	0.162	0.161	5.805	6.951	0.168	nan	0.739	0.277	0.134	0.215	1.511	1.885	0.162	0.180	0.248	0.382	0.012	0.119	0.720	0.143	0.229	0.076	0.137	0.012	0.077	0.060
6098	chr4	182855988	182924272	+	0	NA	Intergenic	HAL1-3A_ME|LINE|L1	175538	NR_125905	90768	Hs.175465	NR_027107		LOC90768	-	uncharacterized LOC90768	ncRNA	nan	0.687	nan	0.044	0.503	0.242	0.159	0.075	0.046	0.080	0.078	0.140	0.183	6.368	0.182	0.179	0.114	0.197	0.315	0.287	0.329	1.354	0.448	0.127	0.125	0.090	0.147	0.915	0.556	0.292	0.152	0.076	0.139	0.352	0.481	0.086	0.139	0.550	0.363	0.087	0.321	0.092	0.168	0.159	0.140	0.004	0.006	0.016	0.074
8202	chr9	93631895	93658995	+	0	NA	intron (NM_001135052, intron 10 of 12)	L1M2|LINE|L1	55743	NM_001174167	6850	Hs.371720	NM_003177	ENSG00000165025	SYK	p72-Syk	spleen associated tyrosine kinase	protein-coding	0.662	nan	0.910	1.517	0.407	0.195	0.236	0.064	0.066	0.335	0.300	0.393	0.662	0.060	0.088	0.254	0.181	0.317	nan	1.131	1.315	1.705	0.549	0.168	0.150	0.152	0.293	3.752	3.968	0.604	0.296	0.211	0.184	0.529	0.539	0.219	0.361	1.119	0.711	0.046	0.665	0.088	0.054	0.236	0.393	0.051	0.363	0.032	0.027
6679	chr6	26213067	26238560	+	0	NA	TTS (NM_003532)	TTS (NM_003532)	430	NM_003532	8353	Hs.443021	NM_003532	ENSG00000274750	HIST1H3E	H3.1|H3/d|H3FD	histone cluster 1 H3 family member e	protein-coding	2.559	1.104	nan	2.341	3.290	1.731	0.302	0.692	0.185	0.450	0.386	1.463	nan	5.176	0.228	7.101	8.809	3.653	nan	3.829	2.658	13.069	5.254	7.210	7.590	0.975	1.226	3.302	4.661	3.391	3.805	0.911	1.827	5.922	4.885	2.480	2.941	1.021	0.712	0.935	4.807	0.674	0.513	0.302	1.463	0.463	1.111	0.903	0.731
2259	chr13	31186445	31196063	+	0	NA	promoter-TSS (NM_001321532)	promoter-TSS (NM_001321532)	480	NM_001313893	3146	Hs.434102	NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding	2.896	2.264	2.390	4.419	2.269	1.275	1.099	3.590	0.235	1.040	0.659	2.514	5.335	2.258	0.115	6.127	6.753	3.404	5.085	5.966	5.814	4.455	1.910	5.258	5.004	3.282	3.563	2.828	4.370	11.073	10.598	6.116	14.574	1.821	2.377	6.213	7.597	1.868	0.773	1.959	1.858	0.425	2.177	1.099	2.514	0.456	1.223	4.148	2.055
7694	chr8	61563318	61568377	+	0	NA	Intergenic	Intergenic	-25477	NM_017780	55636	Hs.20395	NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding	8.310	2.877	9.430	5.331	4.238	2.084	3.214	0.423	0.076	3.218	1.662	6.668	7.816	2.478	0.085	2.507	3.766	2.104	3.336	14.097	11.041	7.761	2.309	2.356	2.545	2.330	nan	3.631	5.737	nan	9.313	1.991	4.332	9.340	9.528	4.443	5.777	5.267	2.883	1.618	6.298	2.543	2.279	3.214	6.668	1.247	5.763	1.237	1.888
2212	chr12	131509822	131520860	+	0	NA	intron (NM_001330497, intron 14 of 25)	intron (NM_001330497, intron 14 of 25)	-36820	NR_131950	105755954	Hs.677534	NR_131950		LACAT8	-	lung adenocarcinoma-associated transcript 8	ncRNA	0.516	1.304	0.345	0.063	0.218	0.124	0.143	0.101	0.029	0.056	0.089	0.108	0.358	0.063	0.103	0.624	1.402	0.130	0.243	0.445	0.435	0.125	0.095	0.115	0.110	0.055	0.197	nan	0.189	0.275	0.179	1.732	0.987	0.068	0.139	0.149	0.222	0.759	0.694	0.309	0.165	0.017	0.007	0.143	0.108	0.106	3.696	1.686	0.050
6694	chr6	29930786	29936578	+	0	NA	Intergenic	MER102a|DNA|hAT-Charlie	-9210	NR_028032	10255	Hs.656251	NM_005844	ENSG00000204625	HCG9	HCGIX|HCGIX4	HLA complex group 9 (non-protein coding)	ncRNA	3.080	3.137	nan	8.749	3.857	1.575	3.949	3.682	0.249	2.602	1.901	5.102	nan	1.255	0.137	3.572	3.758	0.257	nan	5.003	3.189	12.776	3.511	6.082	6.665	1.146	1.779	12.649	13.361	4.135	2.809	1.358	1.421	7.217	10.269	3.488	6.445	5.515	2.745	2.511	1.131	1.816	0.176	3.949	5.102	0.858	5.470	0.851	3.528
1886	chr12	28099451	28102415	+	0	NA	Intergenic	Intergenic	21961	NM_198966	5744	Hs.591159	NM_002820	ENSG00000087494	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone like hormone	protein-coding	nan	nan	nan	0.264	0.348		0.215	0.109	0.006	0.054	0.114	0.040	0.262	0.074	0.138	0.206	0.181	0.348	0.502	0.484	0.743	0.120	0.145	0.226	0.492	0.402	0.699	0.219	0.180	0.488	0.171	0.186	0.179	0.228	0.184	0.124	0.478	0.812	0.318	0.065	0.149	0.107	0.320	0.215	0.040	4.578	0.033	0.066	0.123
7222	chr7	27165620	27181029	+	0	NA	Intergenic	Intergenic	-2925	NM_002141	3201	Hs.533357	NM_002141	ENSG00000197576	HOXA4	HOX1|HOX1D	homeobox A4	protein-coding	1.557	1.234	0.999	0.069	0.857	0.384	0.160	0.132	0.135	0.438	0.252	1.794	1.036	2.289	0.171	7.237	13.139	9.029	nan	2.371	2.153	0.321	0.138	0.611	0.678	0.835	1.257	1.997	2.484	1.490	1.717	2.443	3.573	0.614	0.457	0.271	nan	1.619	0.966	0.469	0.857	0.247	0.367	0.160	1.794	0.309	0.040	1.601	0.097
940	chr1	236028580	236047315	+	0	NA	intron (NR_102436, intron 1 of 3)	Charlie18a|DNA|hAT-Charlie	-7720	NM_000081	1130	Hs.532411	NM_000081	ENSG00000143669	LYST	CHS|CHS1	lysosomal trafficking regulator	protein-coding	2.540	1.991	3.242	0.959	1.118	0.578	0.686	1.166	0.208	2.010	0.980	1.108	1.628	0.419	0.159	0.941	1.201	1.287	2.264	2.262	2.005	nan	0.925	1.074	1.027	1.424	1.621	nan	0.933	1.216	1.246	0.340	0.534	2.481	2.461	0.763	1.105	nan	1.401	0.814	0.370	0.407	0.530	0.686	1.108	0.826	0.565	0.097	0.171
685	chr1	179089090	179153836	+	0	NA	intron (NM_007314, intron 1 of 11)	intron (NM_007314, intron 1 of 11)	-9239	NM_001136000	27	Hs.159472	NM_005158	ENSG00000143322	ABL2	ABLL|ARG	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein-coding	nan	nan	nan	0.177	0.261	0.160	0.301	1.938	0.485	0.171	0.199	0.160	0.428	0.141	0.149	1.017	0.816	1.088	1.776	nan	0.575	0.304	0.133	0.820	0.848	0.908	1.244	0.458	0.500	0.566	0.374	0.978	1.180	0.160	0.210	1.763	nan	0.472	0.495	0.071	0.282	0.034	0.114	0.301	0.160	0.056	0.049	0.468	2.403
5313	chr22	50351540	50364780	+	0	NA	TTS (NM_001001852)	TTS (NM_001001852)	1646	NR_106879	102465493		NR_106879	ENSG00000276753	MIR6821	hsa-mir-6821	microRNA 6821	ncRNA	1.716	1.741	nan	1.488	2.514	1.070	4.598	1.478	0.096	1.386	0.572	2.877	2.833	1.611	0.123	1.755	2.334	2.086	4.533	2.429	2.285	1.690	0.684	3.248	3.453	0.602	1.062	2.412	4.028	2.256	2.357	0.899	1.658	2.549	3.236	1.488	1.715	1.803	0.960	0.954	1.027	0.738	1.291	4.598	2.877	0.911	2.776	0.411	0.693
7809	chr8	97553307	97567731	+	0	NA	intron (NM_002998, intron 1 of 4)	intron (NM_002998, intron 1 of 4)	54637	NM_002998	6383	Hs.1501	NM_002998	ENSG00000169439	SDC2	CD362|HSPG|HSPG1|SYND2	syndecan 2	protein-coding	nan	0.975	1.275	0.710	0.575	0.334	1.074	0.407	0.185	0.076	0.070	0.324	3.612	2.841	0.101	0.334	0.167	0.325	nan	2.670	2.765	1.204	0.466	0.367	0.411	0.196	0.416	1.029	0.893	1.479	1.206	0.214	0.335	0.418	0.870	1.468	3.764	0.360	0.369	0.038	4.359	0.033	0.189	1.074	0.324	0.149	0.049	0.041	1.759
4360	chr2	54195490	54199799	+	0	NA	promoter-TSS (NM_001320587)	promoter-TSS (NM_001320587)	333	NM_014614	23198	Hs.413801	NM_014614	ENSG00000068878	PSME4	PA200	proteasome activator subunit 4	protein-coding	6.987	nan	6.308	4.299	3.159	1.749	2.518	3.225	0.226	3.298	1.678	4.118	9.025	3.011	0.177	5.071	4.489	6.631	9.044	7.192	5.024	9.631	4.254	22.361	22.459	4.673	5.762	9.106	14.789	7.013	8.035	2.909	6.193	2.933	4.303	7.872	7.448	2.510	1.277	1.260	3.180	0.376	1.698	2.518	4.118	1.086	6.552	1.641	2.378
3823	chr18	53441770	53453191	+	0	NA	Intergenic	CpG	139950	NR_110755	101927273	Hs.434335	NR_110755	ENSG00000260930	LINC01416	-	long intergenic non-protein coding RNA 1416	ncRNA	nan	0.755	0.803	0.306	0.299	0.295	0.887	1.160	0.070	0.669	0.545	0.900	0.674	3.195	0.116	0.689	0.461	0.877	0.604	1.069	0.913	3.757	2.010	1.262	1.446	2.310	2.584	0.618	0.766	0.972	0.861	0.531	0.777	3.133	2.939	0.298	0.474	6.467	3.764	0.117	0.343	0.641	0.237	0.887	0.900	0.143	0.500	0.219	0.171
2377	chr13	94699631	94719274	+	0	NA	intron (NM_005708, intron 4 of 8)	intron (NM_005708, intron 4 of 8)	130793	NR_046535	100873972	Hs.670344	NR_046535	ENSG00000236520	GPC6-AS1	-	GPC6 antisense RNA 1	ncRNA	1.270	1.301	1.115	0.080	0.254	0.161	0.411	0.132	0.049	0.080	0.092	0.140	0.404	0.033	0.067	0.552	0.324	0.605	1.145	0.384	0.469	0.558	0.221	0.147	0.109	0.218	0.296	0.467	0.429	0.519	0.243	0.209	0.331	0.187	0.239	2.059	6.269	0.205	0.190	0.173	0.135	0.063	0.187	0.411	0.140	0.020	0.052	0.056	1.643
3975	chr19	13104024	13173869	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	3551	NM_001271043	4784	Hs.257970	NM_002501	ENSG00000008441	NFIX	CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding	1.967	0.935	7.016	0.375	1.126	0.599	1.173	1.366	0.203	0.210	0.160	1.224	0.459	0.395	0.063	1.847	2.839	1.427	3.236	1.627	1.820	1.159	0.369	0.365	0.418	1.983	2.826	1.062	1.031	1.099	0.743	0.785	1.331	0.691	0.934	0.441	0.658	1.731	0.968	3.348	0.763	0.273	0.296	1.173	1.224	0.635	0.324	0.599	0.105
8198	chr9	92854690	92872640	+	0	NA	Intergenic	Intergenic	-59884	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA	0.989	nan	2.745	4.636	3.895	1.802	1.259	0.075	0.081	1.853	0.625	1.631	2.561	0.048	0.058	0.349	0.484	0.338	nan	3.413	3.144	3.733	0.999	0.212	0.230	0.679	1.064	5.237	5.216	0.946	0.754	0.355	0.322	1.799	2.251	0.659	2.381	3.457	1.622	1.678	1.593	0.357	0.318	1.259	1.631	0.612	1.573	0.083	0.870
2500	chr14	25508548	25520762	+	0	NA	intron (NM_001304476, intron 1 of 6)	intron (NM_001304476, intron 1 of 6)	3551	NM_001304477	29091	Hs.508958	NM_014178	ENSG00000168952	STXBP6	HSPC156|amisyn	syntaxin binding protein 6	protein-coding	nan	1.318	1.614	0.431	0.188	0.184	0.705	0.613	0.133	0.102	0.120	0.039	3.218	0.054	0.087	0.213	0.114	0.544	0.998	0.943	0.887	0.166	0.085	0.142	0.117	0.232	0.349	1.013	nan	0.724	0.704	0.124	0.201	0.695	1.018	0.103	0.153	0.606	0.601	6.039	0.154	0.180	0.190	0.705	0.039		0.125	0.041	0.031
3937	chr19	2324100	2346943	+	0	NA	intron (NM_001077238, intron 2 of 15)	intron (NM_001077238, intron 2 of 15)	6892	NM_152988	56928	Hs.744026	NM_152988	ENSG00000005206	SPPL2B	IMP-4|IMP4|PSH4|PSL1	signal peptide peptidase like 2B	protein-coding	1.225	1.472	2.074	2.322	3.897	2.091	1.780	0.418	0.120	1.215	0.710	7.493	3.517	0.642	0.064	1.298	1.419	1.397	2.360	7.652	7.817	2.048	0.578	2.902	3.003	0.927	1.430	3.535	nan	1.578	1.529	0.798	1.261	1.178	1.226	0.656	0.886	2.449	1.255	4.573	4.339	0.250	0.771	1.780	7.493	0.559	1.632	0.367	0.358
3162	chr16	69757655	69763492	+	0	NA	promoter-TSS (NM_000903)	promoter-TSS (NM_000903)	-2	NM_001286137	1728	Hs.406515	NM_000903	ENSG00000181019	NQO1	DHQU|DIA4|DTD|NMOR1|NMORI|QR1	NAD(P)H quinone dehydrogenase 1	protein-coding	nan	nan	1.772	7.030	2.968	1.268	3.065	2.949	0.845	0.789	0.475	1.027	3.091	5.934	0.210	1.599	1.995	1.780	3.304	1.867	1.483	5.054	1.775	17.908	18.841	0.611	nan	6.433	11.138	4.724	3.370	1.093	1.412	3.252	5.177	3.829	4.444	1.875	1.273	3.019	1.334	0.392	1.133	3.065	1.027	1.220	6.496	0.729	1.699
3895	chr18	72913064	72944052	+	0	NA	intron (NM_001308210, intron 1 of 1)	intron (NM_001308210, intron 1 of 1)	5074	NM_001308210	10194	Hs.284217	NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding	nan	nan	1.802	1.579	2.976	1.655	2.610	0.587	0.088	2.106	1.308	3.190	3.957	0.480	0.075	7.119	8.507	2.910	3.261	3.667	nan	4.426	1.471	2.993	2.926	0.699	0.947	3.409	nan	12.544	14.687	3.525	8.559	6.941	6.564	0.479	0.556	1.799	1.055	0.740	1.959	2.152	1.793	2.610	3.190	0.241	0.838	3.529	0.398
3303	chr17	17276065	17292867	+	0	NA	Intergenic	Intergenic	77786	NM_020201	56953	Hs.513977	NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding	1.499	0.798	1.940	0.617	0.864	0.602	0.319	0.053	0.038	0.102	0.065	1.819	0.411	0.084	0.108	0.575	0.776	0.311	nan	0.960	1.118	1.399	0.438	0.294	0.285	0.608	1.198	2.137	2.130	nan	2.786	0.254	0.307	0.275	0.360	2.406	6.194	0.799	0.560	1.158	1.034	0.075	0.773	0.319	1.819	0.473	0.554	0.047	2.931
351	chr1	66755312	66763346	+	0	NA	intron (NM_001037340, intron 5 of 14)	intron (NM_001037340, intron 5 of 14)	-38462	NM_001037339	5142	Hs.198072	NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding	1.135	0.812	nan	0.084	0.209	0.205	0.499	0.222	0.119	0.158	0.109	0.095	0.393	0.019	0.068	0.402	0.282	8.180	4.569	0.259	0.411	0.197	0.110	0.289	0.262	nan	nan	0.479	nan	0.135	0.095	0.234	0.413	0.026	0.076	0.462	0.989	0.762	0.658	0.028	0.113	0.012	0.069	0.499	0.095	0.035	1.239	0.100	0.247
6337	chr5	76924334	76942350	+	0	NA	intron (NM_032109, intron 1 of 2)	CpG-20821	1180	NM_032109	23440	Hs.202247	NM_032109	ENSG00000171540	OTP	-	orthopedia homeobox	protein-coding	1.386	nan	0.561	0.623	0.716	0.365	0.483	0.165	0.126	0.147	0.137	0.511	0.861	0.836	0.132	0.326	0.310	0.250	0.253	2.171	1.504	nan	0.603	0.379	0.427	0.278	nan	1.583	2.295	1.852	1.314	0.317	0.607	0.724	0.485	0.219	0.504	0.299	0.274	0.710	11.379	0.126	0.282	0.483	0.511	0.076	0.491	0.107	0.089
1854	chr12	16680258	16693400	+	0	NA	Intergenic	L2c|LINE|L2	71484	NM_001243611	55885	Hs.504908	NM_018640	ENSG00000048540	LMO3	RBTN3|RBTNL2|RHOM3|Rhom-3	LIM domain only 3	protein-coding	0.755	1.486	1.029	2.091	0.327	0.243	0.401	0.057	0.061	1.308	1.086	1.173	3.653	0.066	0.087	0.334	0.494	1.563	1.381	nan	1.877	9.785	3.242	0.315	0.379	0.246	0.332	3.448	3.800	0.394	0.247	0.212	0.419	0.950	0.648	0.421	0.591	1.431	0.726	4.322	0.146	0.260	0.319	0.401	1.173	0.044	0.054	0.105	0.074
1498	chr11	70447800	70511176	+	0	NA	intron (NR_046567, intron 2 of 2)	intron (NR_046567, intron 2 of 2)	2289	NR_046567	100874198	Hs.656610	NR_046567	ENSG00000226627	SHANK2-AS1	-	SHANK2 antisense RNA 1	ncRNA	nan	0.648	0.954	0.046	0.415	0.210	0.571	0.071	0.089	0.209	0.150	0.370	0.461	0.061	0.096	3.184	4.383	0.482	1.286	0.860	0.751	0.948	0.308	0.354	0.370	0.462	0.766	0.992	1.367	0.654	0.522	2.238	3.072	0.644	0.544	0.534	1.099	0.977	0.775	0.531	0.732	0.100	0.025	0.571	0.370	0.288	0.034	1.958	0.281
6863	chr6	85469551	85487380	+	0	NA	Intergenic	Intergenic	-4511	NM_001080508	9096	Hs.251830	NM_001080508	ENSG00000112837	TBX18	CAKUT2	T-box 18	protein-coding	0.576	0.577	nan	0.498	0.215	0.154	0.949	0.947	0.252	0.885	0.565	0.054	0.232	0.453	0.103	0.193	0.065	0.955	1.587	0.141	0.181	1.792	0.716	1.067	1.151	0.143	0.274	0.563	0.615	0.309	0.127	0.120	0.122	0.063	0.110	0.091	0.195	0.134	0.174	0.022	0.029	0.016	0.009	0.949	0.054	0.016	3.817	0.011	0.048
5874	chr4	41120210	41164953	+	0	NA	intron (NM_001166050, intron 2 of 17)	intron (NM_001166050, intron 2 of 17)	74054	NM_001166050	323	Hs.479602	NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding	0.740	nan	nan	0.293	0.373	0.201	0.229	1.413	0.156	0.192	0.177	0.225	0.350	3.668	0.147	0.681	0.617	0.780	2.418	0.224	0.296	1.455	0.396	0.165	0.158	0.161	0.287	0.401	0.483	0.487	0.260	0.460	0.667	0.515	0.669	0.283	0.553	1.403	0.969	0.043	0.169	0.122	0.737	0.229	0.225	0.019	0.054	0.211	0.077
4620	chr2	178457395	178471803	+	0	NA	Intergenic	Intergenic	19095	NM_152275	92104	Hs.128384	NM_152275	ENSG00000197557	TTC30A	IFT70A	tetratricopeptide repeat domain 30A	protein-coding	1.266	0.744	2.051	0.121	0.277	0.111	0.318	0.136	0.044	0.087	0.149	0.166	0.337	0.053	0.082	0.621	1.126	1.535	3.604	0.344	0.346	0.713	0.227	0.333	0.276	4.561	5.648	0.357	0.435	0.875	0.907	0.330	0.468	0.265	0.267	0.817	1.560	0.507	0.427	0.065	0.114	0.052	0.110	0.318	0.166	0.598	0.091	0.062	0.298
901	chr1	227125365	227136426	+	0	NA	intron (NM_020247, intron 1 of 14)	intron (NM_020247, intron 1 of 14)	2957	NM_020247	56997	Hs.118241	NM_020247	ENSG00000163050	COQ8A	ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9	coenzyme Q8A	protein-coding	3.151	nan	3.855	4.818	2.576	1.247	3.109	1.192	0.147	3.971	1.668	2.953	3.234	1.305	0.103	3.015	3.566	3.145	5.054	5.600	nan	8.933	2.881	3.144	3.219	2.615	3.266	4.794	6.190	3.164	4.352	0.799	1.285	2.849	3.112	3.054	3.665	2.864	1.979	2.931	1.697	0.397	1.567	3.109	2.953	1.044	1.751	0.405	1.012
2191	chr12	123712236	123728558	+	0	NA	intron (NM_001194995, intron 1 of 2)	AluSx1|SINE|Alu	2106	NM_001143905	91574	Hs.319128	NM_152269	ENSG00000130921	C12orf65	COXPD7|SPG55	chromosome 12 open reading frame 65	protein-coding	1.830	1.632	1.387	1.508	1.879	1.136	1.083	0.762	0.226	0.983	0.627	1.806	4.438	1.512	0.144	1.543	1.999	1.364	1.828	3.746	3.477	nan	0.921	3.415	3.649	3.611	4.449	3.029	4.395	2.589	2.176	1.470	2.288	2.385	2.647	2.268	3.425	2.746	1.198	1.964	2.300	0.492	1.810	1.083	1.806	0.375	0.907	1.060	0.865
8322	chr9	137022606	137031282	+	0	NA	Intergenic	L1MC5|LINE|L1	2742	NR_023344	100151684	Hs.545589	NR_023344	ENSG00000221676	RNU6ATAC	RNU6ATAC1|U6ATAC	RNA, U6atac small nuclear (U12-dependent splicing)	snRNA	nan	2.184	1.881	2.897	4.661	2.420	1.570	1.084	0.093	0.668	0.455	1.520	3.495	1.154	0.084	2.103	2.846	1.938	2.953	4.463	5.246	nan	2.340	2.270	2.742	1.025	1.456	2.895	3.467	4.584	4.669	2.975	3.585	3.503	3.864	2.298	1.891	1.680	0.970	5.118	2.379	0.648	1.343	1.570	1.520	1.077	1.517	1.070	0.467
1056	chr10	17684920	17687061	+	0	NA	promoter-TSS (NM_001324286)	promoter-TSS (NM_001324286)	-73	NR_110370	102723166	Hs.547311	NR_110370	ENSG00000260589	STAM-AS1	locus3182	STAM antisense RNA 1 (head to head)	ncRNA	7.099	5.339	9.247	9.158	8.646	3.893	4.246	13.140	1.174	2.544	1.104	8.225	10.788	6.896	0.119	15.384	14.756	15.136	21.227	17.212	16.109	23.325	15.351	15.457	17.624	9.453	10.680	11.860	18.598	10.734	11.772	9.694	13.202	6.380	6.759	14.298	12.734	5.419	2.617	3.821	3.802	0.763	3.231	4.246	8.225	1.339	2.412	2.551	4.369
7032	chr6	147945866	147976294	+	0	NA	Intergenic	Intergenic	131252	NM_001030060	389432	Hs.567973	NM_001030060	ENSG00000203727	SAMD5	dJ875H10.1	sterile alpha motif domain containing 5	protein-coding	nan	0.671	nan	0.069	0.216	0.048	0.256	0.607	0.090	0.076	0.071	0.067	0.235	0.046	0.089	0.485	0.338	2.094	3.961	0.248	0.315	1.645	0.687	0.200	0.240	0.183	0.301	0.189	0.213	0.910	0.593	0.188	0.361	0.075	0.101	0.281	0.670	0.311	0.347	0.029	0.085	0.022	0.031	0.256	0.067	0.029	0.013	0.082	0.223
3664	chr18	10656127	10662976	+	0	NA	Intergenic	Intergenic	-2379	NR_110777	101927410	Hs.436902	NR_110777	ENSG00000260779	LOC101927410	-	uncharacterized LOC101927410	ncRNA	2.854	1.116	0.820	0.452	0.236	0.002	0.036	0.097	0.118	0.113	0.203	0.052	0.480	0.064	0.118	4.285	8.150	0.593	0.446	0.643	0.704	23.660	19.487	0.301	0.289	0.333	0.573	0.748	0.839	0.562	0.214	0.211	0.288	0.233	0.213	0.072	0.188	1.224	0.978	0.334	0.131	0.028	0.133	0.036	0.052	0.228	0.075	0.116	0.018
6540	chr5	167740212	167763579	+	0	NA	intron (NM_015238, intron 1 of 22)	L1MEf|LINE|L1	32830	NM_001161662	23286	Hs.484047	NM_015238	ENSG00000113645	WWC1	HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168	WW and C2 domain containing 1	protein-coding	nan	1.177	0.888	0.936	0.361	0.188	0.223	0.078	0.062	0.401	0.254	3.428	1.598	0.122	0.105	0.562	0.600	1.125	4.405	1.076	0.987	2.424	0.700	0.384	0.389	0.125	0.216	1.820	1.890	0.373	0.256	0.272	0.549	0.188	0.186	0.315	0.835	0.829	0.660	1.147	0.367	0.041	0.386	0.223	3.428	0.045	0.131	0.187	0.163
3108	chr16	30379395	30391100	+	0	NA	promoter-TSS (NM_013292)	promoter-TSS (NM_013292)	-851	NM_013292	29895	Hs.50889	NM_013292	ENSG00000180209	MYLPF	HUMMLC2B|MLC2B|MRLC2|MYL11	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	3.079	2.129	3.022	3.822	3.724	2.313	2.404	1.069	0.219	0.970	0.502	3.207	9.313	1.868	0.085	2.636	3.086	2.719	3.640	4.320	3.645	6.297	2.947	4.289	4.165	2.011	2.909	6.421	8.904	4.144	4.313	1.611	3.075	2.766	2.924	2.349	5.218	2.237	1.103	2.777	2.340	0.727	1.559	2.404	3.207	1.005	2.577	1.055	1.545
4285	chr2	33135498	33141763	+	0	NA	intron (NR_027099, intron 5 of 5)	L2a|LINE|L2	-13564	NR_027097	100271832	Hs.743603	NR_027097		LOC100271832	-	uncharacterized LOC100271832	ncRNA	3.179	nan	nan	0.084	0.208	0.205	0.349	0.118	0.215	0.049	0.119	0.133	0.207	0.068	0.096	4.718	4.622	3.527	4.000	3.737	3.547	2.553	3.411	3.743	nan	3.060	3.054	3.176	2.501	nan	3.253	4.279	3.570	2.647	2.828	3.821	3.026	4.243	3.440	0.027	0.115	0.122	0.026	0.349	0.133	0.030	0.080	0.048	0.098
5066	chr21	18979529	18986248	+	0	NA	intron (NM_006806, intron 1 of 4)	intron (NM_006806, intron 1 of 4)	2380	NM_006806	10950	Hs.473420	NM_006806	ENSG00000154640	BTG3	ANA|APRO4|TOB5|TOB55|TOFA	BTG anti-proliferation factor 3	protein-coding	4.529	2.917	nan	2.882	3.439	1.712	3.102	0.022		1.437	0.579	3.674	15.132	2.802	0.130	1.690	2.797	3.744	6.385	5.700	4.329	2.383	1.166	6.729	6.722	4.642	5.609	0.944	2.213	4.715	5.586	1.129	2.377	7.880	7.866	4.046	4.098	1.814	1.240	4.595	4.372	1.601	2.126	3.102	3.674	0.346	0.015	0.368	1.155
2753	chr14	96543403	96576786	+	0	NA	3' UTR (NM_001252507, exon 2 of 2)	3' UTR (NM_001252507, exon 2 of 2)	54433	NM_001282464	56967	Hs.6434	NM_020215	ENSG00000227051	C14orf132	C14orf88	chromosome 14 open reading frame 132	protein-coding	1.541	1.412	nan	2.133	0.350	0.176	0.672	0.748	0.169	0.307	0.137	1.208	2.106	0.087	0.113	0.374	0.490	0.203	0.305	1.158	1.188	1.702	0.491	0.662	0.763	1.634	2.073	3.460	2.688	5.170	5.122	0.385	0.476	1.056	1.155	0.537	1.039	nan	0.802	2.425	0.326	0.315	1.709	0.672	1.208	0.532	1.938	0.238	0.287
1473	chr11	65623867	65629500	+	0	NA	promoter-TSS (NM_005507)	promoter-TSS (NM_005507)	-879	NM_005507	1072	Hs.170622	NM_005507	ENSG00000172757	CFL1	CFL|HEL-S-15|cofilin	cofilin 1	protein-coding	nan	4.528	4.411	9.837	7.127	3.637	6.566	3.933	0.345	3.641	2.418	8.561	21.843	10.805	0.183	6.645	9.779	6.935	9.499	13.995	11.336	11.191	3.401	17.478	18.722	6.732	9.973	10.066	10.457	7.847	8.073	4.115	9.854	7.772	7.231	3.466	8.914	4.273	1.889	8.130	8.964	3.255	4.616	6.566	8.561	3.591	4.727	3.342	3.355
881	chr1	223846703	223857300	+	0	NA	intron (NM_001143962, intron 1 of 16)	intron (NM_001143962, intron 1 of 16)	1435	NM_001143962	388743	Hs.291487	NM_001143962	ENSG00000203697	CAPN8	nCL-2	calpain 8	protein-coding	0.735	5.262	0.979	0.112	0.443	0.211	0.653	0.111	0.108	0.170	0.175	0.073	0.532	0.031	0.083	0.518	0.294	0.398	0.833	0.440	nan	0.360	0.140	0.480	0.362	0.255	0.459	1.377	0.907	0.493	0.280	0.127	0.122	0.131	0.157	0.228	0.325	1.683	1.150	0.108	0.101	0.044	0.015	0.653	0.073	0.036	0.804	0.018	0.023
2461	chr13	113364604	113399326	+	0	NA	intron (NM_032189, intron 1 of 28)	intron (NM_032189, intron 1 of 28)	27080	NR_109811	100874205	Hs.658692	NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA	0.766	nan	0.812	0.637	0.929	0.397	1.946	0.067	0.074	0.891	0.663	1.062	1.402	0.722	0.090	4.631	5.815	1.522	2.112	1.345	1.267	3.155	1.143	0.271	0.268	0.090	0.136	1.798	2.048	0.309	0.250	0.691	1.074	1.578	1.419	0.118	0.151	0.924	0.396	1.701	0.696	0.262	0.114	1.946	1.062	0.218	1.084	0.380	0.018
6880	chr6	101766916	101775854	+	0	NA	Intergenic	L1PA13|LINE|L1	-75476	NM_175768	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding	0.773	nan	nan	0.068	0.222	0.054	0.143	0.175	0.127	0.071	0.110	0.027	0.333	0.036	0.122	3.555	2.408	10.590	6.252	0.287	nan	0.131	0.102	0.301	0.259	0.272	0.405	0.205	0.199	nan	0.144	0.767	1.811	0.127	0.199	0.188	0.329	0.195	0.260	0.013	0.020		0.008	0.143	0.027	0.066	0.011	0.678	0.027
3186	chr16	79023704	79049238	+	0	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	598151	NM_005360	4094	Hs.134859	NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding	0.594	0.724	nan	2.716	4.580	2.399	0.568	0.044	0.031	0.589	0.256	2.791	1.405	0.017	0.064	0.309	0.216	0.390	1.511	0.897	0.907	3.659	1.342	0.339	0.294	0.074	0.147	3.284	4.287	0.793	0.616	0.112	0.181	0.002	0.002	0.191	0.308	3.896	1.748	1.710	1.768	0.007	0.183	0.568	2.791	0.373	0.056	0.027	0.053
405	chr1	94039564	94070629	+	0	NA	intron (NM_001261408, intron 6 of 13)	intron (NM_001261408, intron 6 of 13)	-2429	NR_034091	100129046	Hs.729244	NR_034091		LOC100129046	-	uncharacterized LOC100129046	ncRNA	nan	nan	1.479	0.671	0.643	0.295	1.449	1.753	0.295	0.388	0.255	0.581	1.860	0.101	0.117	0.486	0.653	0.415	0.783	1.353	nan	1.872	0.525	0.667	0.685	1.836	nan	4.183	4.493	nan	0.418	0.503	0.449	1.235	0.843	0.507	0.839	1.530	0.820	2.107	0.527	0.316	0.123	1.449	0.581	0.066	0.667	0.437	0.245
7033	chr6	148057523	148086878	+	0	NA	Intergenic	L2a|LINE|L2	242372	NM_001030060	389432	Hs.567973	NM_001030060	ENSG00000203727	SAMD5	dJ875H10.1	sterile alpha motif domain containing 5	protein-coding	nan	0.824	nan	0.096	0.184	0.042	0.179	0.701	0.191	0.080	0.074	0.093	0.187	0.048	0.113	0.655	0.450	5.655	7.981	0.289	0.299	2.737	0.713	0.337	0.344	0.355	0.481	0.281	0.223	0.839	0.393	0.598	1.235	0.138	0.208	0.259	0.470	0.336	0.308	0.080	0.106	0.032	0.041	0.179	0.093	0.040	0.280	0.755	0.200
6092	chr4	182468887	182493386	+	0	NA	Intergenic	Intergenic	-400834	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA	nan	0.692	nan	0.038	0.801	0.432	0.120	0.075	0.063	0.220	0.073	0.111	0.117	0.151	0.082	0.182	0.112	0.204	0.276	0.256	0.355	3.888	1.195	0.146	0.129	0.084	0.175	0.342	0.280	0.379	0.180	0.106	0.124	0.326	0.459	0.075	0.135	0.470	0.443	0.037	0.112	0.046	0.077	0.120	0.111	0.016	0.120	0.020	0.030
8172	chr9	81578641	81591795	+	0	NA	Intergenic	LTR8A|LTR|ERV1	175363	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA	0.695	1.369	0.705	5.812	4.614	2.438	3.269	0.070	0.134	1.758	0.862	4.467	3.985	0.058	0.082	0.224	0.155	0.277	0.795	4.484	4.884	4.465	1.981	0.160	0.110	0.056	0.177	2.739	3.055	0.427	0.487	0.082	0.142	3.463	4.010	0.287	0.564	2.694	1.260	0.516	1.739	1.118	1.666	3.269	4.467	0.357	0.031	0.030	0.056
8045	chr9	11272729	11283821	+	0	NA	Intergenic	Intergenic	665069	NR_110696	101929428	Hs.434446	NR_110696	ENSG00000226717	PTPRD-AS2	-	PTPRD antisense RNA 2 (head to head)	ncRNA	nan	nan	0.465	0.135	1.224	0.661	0.162	0.074	0.104	0.175	0.182	0.129	0.296	0.068	0.118	0.211	0.155	0.270	0.436	0.148	0.261	6.742	2.328	0.067	0.148	0.621	0.762	0.159	0.197	0.287	0.133	0.079	0.191	0.110	0.110	0.078	0.145	1.005	0.662	0.020	0.032	0.009	0.022	0.162	0.129		0.028	0.026	
1734	chr11	129715757	129737326	+	0	NA	intron (NM_138788, intron 4 of 5)	AluY|SINE|Alu	36363	NM_006165	4798	Hs.530539	NM_006165	ENSG00000170322	NFRKB	INO80G	nuclear factor related to kappaB binding protein	protein-coding	0.612	1.716	0.768	0.706	0.472	0.289	0.581	0.132	0.067	0.284	0.199	0.480	1.329	0.165	0.124	0.645	0.862	1.406	4.168	0.769	0.635	0.762	0.243	0.837	0.864	0.239	0.522	1.324	1.468	0.488	0.371	0.710	0.837	0.275	0.447	0.240	nan	0.691	0.485	1.114	0.346	0.069	0.069	0.581	0.480	0.027	0.329	0.270	0.161
3230	chr17	932252	955379	+	0	NA	intron (NM_001322841, intron 16 of 22)	intron (NM_001322841, intron 16 of 22)	-8734	NM_001256847	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding	1.545	0.656	1.416	0.129	0.435	0.228	0.387	0.100	0.031	0.136	0.107	0.870	0.295	0.084	0.077	1.994	3.206	0.342	0.552	0.757	0.693	0.425	0.170	0.443	0.450	0.387	0.755	0.187	0.432	3.770	3.312	0.247	0.395	0.117	0.150	0.941	2.483	0.400	0.209	0.529	0.223	0.054	0.804	0.387	0.870	0.634	0.113	0.133	0.922
7042	chr6	150175659	150190648	+	0	NA	intron (NM_032832, intron 1 of 6)	intron (NM_032832, intron 1 of 6)	-1481	NR_045126	100652739	Hs.642734	NR_045126	ENSG00000223701	RAET1E-AS1	RAET1G-AS1	RAET1E antisense RNA 1	ncRNA	nan	2.001	1.579	1.979	0.886	0.591	1.418	0.972	0.226	0.408	0.237	1.861	3.734	0.924	0.137	1.506	1.632	1.097	1.933	2.660	nan	5.873	2.353	1.061	1.028	0.795	1.004	2.046	3.040	1.283	1.401	0.900	1.391	2.096	1.938	0.674	nan	0.840	0.658	0.847	1.227	0.627	0.680	1.418	1.861	0.305	1.003	0.408	0.074
392	chr1	87377835	87382561	+	0	NA	promoter-TSS (NM_001134492)	promoter-TSS (NM_001134492)	-40	NR_144512	9403	Hs.362728	NM_004261	ENSG00000183291	SELENOF	SEP15	selenoprotein F	protein-coding	5.523	nan	nan	4.706	5.013	2.261	2.578	4.041	0.413	1.561	0.748	4.731	11.489	3.123	0.102	5.840	6.332	5.877	9.002	9.265	8.832	9.240	6.091	14.377	15.834	6.461	7.265	11.399	18.090	8.437	8.841	4.052	7.171	3.856	4.932	10.003	8.578	4.157	2.135	3.139	3.580	0.764	2.657	2.578	4.731	1.012	2.080	1.967	2.479
7484	chr7	130578464	130610858	+	0	NA	intron (NR_110472, intron 2 of 3)	intron (NR_110472, intron 2 of 3)	3408	NR_110472	378805	Hs.150556	NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA	nan	nan	nan	0.276	0.391	0.233	0.537	2.141	0.223	0.343	0.222	0.528	0.303	7.013	0.195	0.430	0.457	0.445	0.926	0.695	0.748	nan	0.203	0.447	0.429	0.215	nan	0.424	0.603	nan	0.268	0.471	0.597	0.181	0.168	0.441	0.763	0.919	nan	0.135	0.269	0.021	0.085	0.537	0.528	0.255	0.654	0.156	0.092
2242	chr13	25860021	25877812	+	0	NA	Intergenic	FRAM|SINE|Alu	-6750	NM_014089	9818	Hs.507537	NM_014089	ENSG00000139496	NUP58	NUP45|NUPL1|PRO2463	nucleoporin 58	protein-coding	2.065	1.637	1.642	1.479	0.969	0.406	0.696	1.035	0.072	0.457	0.292	1.783	2.194	0.585	0.072	2.630	2.642	2.414	nan	3.445	3.240	2.716	1.289	1.608	1.436	1.521	1.703	1.655	2.248	5.505	5.899	1.625	2.569	0.727	0.837	2.851	5.769	2.197	1.415	0.634	0.665	0.144	0.590	0.696	1.783	0.333	0.618	0.675	1.599
5530	chr3	127597284	127608181	+	0	NA	Intergenic	Intergenic	-39170	NM_207335	166348	Hs.132087	NM_207335	ENSG00000187715	KBTBD12	KLHDC6	kelch repeat and BTB domain containing 12	protein-coding	1.917	nan	1.551	0.177	0.530	0.354	0.341	0.221	0.075	0.261	0.204	0.299	0.564	0.010	0.087	0.360	0.308	0.183	0.315	1.752	1.473	1.051	0.423	0.227	0.237	1.535	nan	0.186	0.220	8.357	7.194	0.345	0.550	0.781	0.621	1.553	4.344	1.522	0.859	2.602	0.367	0.228	2.184	0.341	0.299	1.041	0.204	0.099	1.509
2254	chr13	27936002	27950071	+	0	NA	Intergenic	Intergenic	-55645	NM_002097	2971	Hs.445977	NM_002097	ENSG00000122034	GTF3A	AP2|TFIIIA	general transcription factor IIIA	protein-coding	0.691	0.784	1.377	3.203	1.620	0.743	0.091	0.153	0.092	0.770	0.290	1.602	1.342	0.092	0.067	0.756	0.816	2.646	nan	2.374	2.264	1.927	0.388	0.131	0.183	0.261	0.363	6.579	5.308	0.995	0.825	0.757	0.952	0.396	0.309	0.220	0.364	2.225	1.241	0.222	0.285	0.055	0.022	0.091	1.602	0.028	5.412	0.276	0.043
813	chr1	205089534	205092385	+	0	NA	intron (NM_005057, intron 1 of 13)	intron (NM_005057, intron 1 of 13)	191	NM_005057	5929	Hs.519230	NM_005057	ENSG00000117222	RBBP5	RBQ3|SWD1	RB binding protein 5, histone lysine methyltransferase complex subunit	protein-coding	4.830	5.179	5.609	4.619	6.911	3.315	4.892	4.034	0.282	2.954	1.548	5.111	9.691	5.272	0.160	10.431	10.467	13.503	19.563	11.673	13.410	8.189	8.178	nan	nan	6.087	7.396	8.825	12.675	9.236	7.960	6.195	7.128	6.215	8.687	8.310	9.555	4.577	2.502	3.197	6.402	0.867	2.543	4.892	5.111	1.223	1.886	1.656	2.384
644	chr1	167050181	167055432	+	0	NA	intron (NM_005814, intron 1 of 6)	L2b|LINE|L2	7062	NM_005814	10223	Hs.651244	NM_005814	ENSG00000143167	GPA33	A33	glycoprotein A33	protein-coding	1.658	nan	6.123	0.118	0.533	0.336	0.560	0.213	0.062	0.357	0.188	0.057	0.760	0.062	0.097	0.697	0.992	0.491	1.200	0.847	nan	5.292	0.809	0.225	0.205	0.600	0.977	0.986	nan	1.017	1.566	4.663	5.435	8.340	9.433	0.804	1.808	0.703	0.727	0.064	0.490	2.959	0.275	0.560	0.057	0.999	0.192	8.161	0.870
6810	chr6	52580404	52597662	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	20924	NR_033760	730152	Hs.739662	NR_033760		GSTA7P	GSTAP2|GSTAP6	glutathione S-transferase alpha 7, pseudogene	pseudo	1.032	1.095	nan	0.727	0.484	0.232	0.217	0.207	0.056	1.161	0.708	0.151	0.478	0.056	0.154	0.667	0.998	0.366	0.570	0.324	0.327	5.817	1.644	0.483	0.390	0.256	0.365	7.870	7.640	0.421	0.190	0.271	0.463	2.471	3.716	0.587	1.092	4.723	1.804	0.094	0.286	0.561	0.051	0.217	0.151	0.061	2.010	0.229	0.231
2477	chr13	114893118	114915265	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-6093	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding	0.783	nan	0.561	1.413	0.421	0.268	0.877	0.526	0.058	0.247	0.099	1.999	2.511	0.108	0.075	1.585	2.765	0.239	0.368	1.625	1.626	1.122	0.294	0.110	0.113	0.090	0.193	2.827	3.221	0.713	0.777	0.927	1.563	0.404	0.297	0.471	0.769	0.109	0.126	3.804	1.959	0.069	0.046	0.877	1.999	0.184	0.949	1.020	0.151
3360	chr17	31151970	31158890	+	0	NA	intron (NM_001303280, intron 1 of 10)	AluY|SINE|Alu	48761	NM_001303279	4642	Hs.602063	NM_015194	ENSG00000176658	MYO1D	PPP1R108|myr4	myosin ID	protein-coding	nan	1.677	3.118	1.925	1.878	0.867	0.075	0.127	0.069	0.838	0.463	1.005	4.865	0.109	0.129	0.427	0.414	0.182	0.354	nan	1.962	5.811	1.634	0.378	0.325	6.150	6.464	3.621	3.594	nan	0.288	0.202	0.281	1.429	1.645	0.197	0.490	4.052	1.818	3.439	2.196	0.374	0.997	0.075	1.005	0.366	0.567	0.068	0.036
1820	chr12	10506157	10526010	+	0	NA	promoter-TSS (NR_120430)	promoter-TSS (NR_120430)	-285	NR_120430	101928100	Hs.638425	NR_120430	ENSG00000245648	LOC101928100	-	uncharacterized LOC101928100	ncRNA	0.914	1.907	0.874	5.077	0.975	0.483	0.103	0.519	0.058	1.476	0.705	0.671	4.173	0.513	0.144	0.313	0.316	3.287	5.326	nan	2.059	9.381	2.844	1.980	2.275	0.136	0.227	4.738	6.443	0.338	0.087	0.795	1.200	0.161	0.145	0.290	0.377	1.594	0.885	3.120	4.497	0.024	0.036	0.103	0.671	0.005	1.451	0.833	0.062
5308	chr22	49312432	49328225	+	0	NA	Intergenic	MLT2B4|LTR|ERVL	57746	NR_038944	100128946	Hs.535676	NR_038944	ENSG00000205632	LINC01310	WI2-81516E3.1	long intergenic non-protein coding RNA 1310	ncRNA	1.364	0.414	nan	0.056	0.312	0.194	0.065	0.047	0.041	0.139	0.078	1.115	3.011	0.062	0.123	0.197	0.119	0.124	0.129	1.888	1.873	4.574	1.547	0.076	0.132	0.477	0.711	3.511	3.394	5.098	5.894	0.203	0.370	1.522	1.340	0.055	0.153	3.382	1.496	4.147	0.311	0.108	0.010	0.065	1.115	1.909	4.813	0.226	0.031
5275	chr22	40573007	40576591	+	0	NA	intron (NM_001162501, intron 1 of 22)	intron (NM_001162501, intron 1 of 22)	870	NM_001162501	23112	Hs.372082	NM_015088	ENSG00000100354	TNRC6B	-	trinucleotide repeat containing 6B	protein-coding	5.097	nan	2.946	2.694	3.631	1.431	3.187	3.289	0.059	2.247	1.137	4.876	6.180	6.675	0.305	4.147	3.988	12.664	13.903	4.912	4.766	6.235	2.348	10.408	9.967	5.890	6.667	4.134	6.877	12.009	10.076	1.815	3.718	3.753	7.064	7.988	7.697	1.196	0.433	1.624	2.399	0.987	1.818	3.187	4.876	1.478	1.999	1.624	2.584
4185	chr2	3504899	3512756	+	0	NA	intron (NM_018269, intron 2 of 3)	T-rich|Low_complexity|Low_complexity	12691	NM_001306077	55256	Hs.502773	NM_018269	ENSG00000182551	ADI1	APL1|ARD|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD	acireductone dioxygenase 1	protein-coding	0.923	0.618	0.751	3.816	2.106	0.794	0.210	0.029	0.068	0.520	0.410	4.521	0.693	0.124	0.131	0.406	0.483	0.329	0.507	5.200	5.993	3.594	1.962	0.195	0.251	0.370	0.758	3.171	6.821	0.483	0.293	0.195	0.222	0.468	0.842	0.731	1.876	4.578	1.908	0.092	0.296	0.085	0.252	0.210	4.521	0.099	1.265	0.050	0.424
1802	chr12	7008314	7025048	+	0	NA	intron (NM_201650, intron 5 of 7)	MIRc|SINE|MIR	2784	NM_201650	10233	Hs.155586	NM_006992	ENSG00000010626	LRRC23	LRPB7	leucine rich repeat containing 23	protein-coding	2.075	nan	nan	1.850	2.043	1.112	2.150	0.192	0.067	0.732	0.515	2.053	3.901	0.748	0.171	0.800	1.308	1.945	2.843	nan	4.219	5.023	2.815	1.774	1.828	1.694	2.377	1.384	2.695	0.967	0.846	0.957	1.740	1.999	1.707	1.906	nan	1.313	0.755	1.298	1.437	0.346	1.544	2.150	2.053	3.166	0.643	0.566	1.136
2775	chr14	101939775	101949087	+	0	NA	Intergenic	Intergenic	36018	NR_135240	100507277	Hs.123543	NR_135240	ENSG00000259082	LOC100507277	-	uncharacterized LOC100507277	ncRNA	1.179	0.735	0.402	0.093	0.414	0.169	8.107	0.129	0.100	0.068	0.106	0.168	0.650	0.081	0.082	0.267	0.133	0.252	0.397	0.823	0.915	0.114	0.070	0.040	0.083	0.139	0.239	1.866	2.357	0.546	0.268	0.180	0.170	0.068	0.119	0.137	0.281	0.352	0.343	1.479	1.699		0.025	8.107	0.168	0.262	0.033	0.011	0.014
7494	chr7	134191189	134215160	+	0	NA	Intergenic	MER4B-int|LTR|ERV1	-9170	NM_020299	57016	Hs.116724	NM_020299	ENSG00000198074	AKR1B10	AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI	aldo-keto reductase family 1 member B10	protein-coding	nan	nan	nan	0.106	0.175	0.094	0.187	0.183	0.154	0.119	0.100	0.045	0.254	0.059	0.148	0.525	0.334	0.218	0.301	0.420	0.576	nan	0.104	0.372	0.374	0.226	nan	0.424	0.494	nan	3.032	0.303	0.382	0.076	0.149	1.102	4.396	0.755	nan	0.088	0.190	0.012	0.263	0.187	0.045	0.406	0.080	0.091	0.709
2273	chr13	37454263	37497251	+	0	NA	intron (NM_005905, intron 1 of 5)	AluSz6|SINE|Alu	18652	NM_001127217	4093	Hs.123119	NM_005905	ENSG00000120693	SMAD9	MADH6|MADH9|PPH2|SMAD8|SMAD8/9|SMAD8A|SMAD8B	SMAD family member 9	protein-coding	1.830	2.594	2.632	1.957	3.310	1.842	1.337	0.238	0.135	1.216	0.606	4.482	4.285	0.163	0.072	1.437	1.166	1.136	1.053	3.830	3.831	3.288	1.050	0.518	0.483	1.781	2.210	0.310	0.424	1.326	1.140	0.695	1.646	2.125	3.200	3.512	6.366	1.302	0.618	0.315	0.755	0.567	1.319	1.337	4.482	0.186	1.227	0.824	2.880
8343	chr9	139938400	139953606	+	0	NA	exon (NM_001246, exon 3 of 9)	exon (NM_001246, exon 3 of 9)	2500	NM_203468	954	Hs.123036	NM_001246	ENSG00000054179	ENTPD2	CD39L1|NTPDase-2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding	nan	3.044	2.204	5.789	1.251	0.589	1.059	0.134	0.176	1.099	0.500	1.399	5.923	0.256	0.063	0.683	1.076	0.816	1.272	4.775	4.547	nan	0.642	0.107	0.126	0.551	0.772	3.488	4.506	1.991	1.913	0.423	0.646	1.775	1.204	0.615	1.141	1.837	0.959	2.562	1.080	0.632	0.238	1.059	1.399	0.715	1.303	0.268	0.228
791	chr1	203416047	203436749	+	0	NA	Intergenic	L2a|LINE|L2	-18485	NM_002725	5549	Hs.632481	NM_002725	ENSG00000188783	PRELP	MST161|MSTP161|SLRR2A	proline and arginine rich end leucine rich repeat protein	protein-coding	1.483	1.074	1.438	0.195	0.566	0.326	0.892	0.148	0.155	0.697	0.324	0.541	1.084	0.042	0.109	0.566	0.740	0.407	0.711	0.695	0.799	3.702	1.255	nan	nan	1.873	2.423	0.501	0.589	0.767	0.422	0.198	0.266	1.837	1.841	0.520	1.499	2.174	1.150	0.021	0.415	1.111	0.093	0.892	0.541	0.475	0.034	0.072	0.214
3330	chr17	25800223	25887878	+	0	NA	intron (NM_014238, intron 2 of 20)	MER4D1|LTR|ERV1	45014	NM_014238	8844	Hs.133534	NM_014238	ENSG00000141068	KSR1	KSR|RSU2	kinase suppressor of ras 1	protein-coding	nan	nan	nan	0.260	0.537	0.280	0.180	0.678	0.128	0.084	0.071	0.115	1.194	0.092	0.110	1.247	1.671	1.230	2.459	0.386	0.401	0.922	0.266	0.944	0.937	0.134	0.259	2.011	2.247	2.193	2.038	1.495	2.112	0.510	0.644	0.848	nan	0.942	0.683	0.203	0.527	0.094	0.401	0.180	0.115	0.344	0.195	1.425	0.626
2231	chr13	21384292	21424362	+	0	NA	intron (NM_022459, intron 6 of 22)	intron (NM_022459, intron 6 of 22)	-56230	NM_001318939	221143	Hs.26674	NM_174928	ENSG00000150456	EEF1AKMT1	ESP13|N6AMT2	eukaryotic translation elongation factor 1 alpha lysine methyltransferase 1	protein-coding	1.167	1.054	1.368	0.291	0.143	0.094	0.058	1.883	0.285	0.141	0.100	0.120	0.247	0.125	0.090	0.499	0.475	0.361	nan	0.799	0.933	0.617	0.207	0.243	0.198	0.617	1.010	0.472	0.498	0.736	0.330	0.281	0.389	0.187	0.192	2.508	7.231	0.900	0.606	0.043	0.085	0.040	0.079	0.058	0.120	0.024	0.138	0.059	1.964
5904	chr4	54822028	54833572	+	0	NA	Intergenic	Intergenic	25649	NR_027153	402176	Hs.452943	NM_001011538		RPL21P44	RPL21_17_477	ribosomal protein L21 pseudogene 44	pseudo	nan	0.452	0.474	0.136	0.409	0.263	0.482	0.124	0.069	1.084	0.469	0.300	0.275	0.047	0.091	0.372	0.512	0.392	0.898	0.198	0.251	9.590	3.600	0.261	0.286	0.230	0.479	0.656	0.644	0.348	0.139	0.240	0.328	0.483	0.274	0.241	0.329	2.976	2.193	0.024	0.090	0.052	0.110	0.482	0.300		0.563	0.052	0.097
3231	chr17	975797	999720	+	0	NA	intron (NM_001322841, intron 4 of 22)	intron (NM_001322841, intron 4 of 22)	-5372	NM_001282149	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding	1.787	1.578	1.161	1.054	2.383	1.288	2.670	0.130	0.081	1.619	0.715	1.599	2.869	0.082	0.069	1.752	2.462	0.853	1.814	2.911	2.575	2.645	1.656	1.214	1.232	0.771	1.196	3.459	4.802	0.684	0.564	1.638	2.066	1.166	1.108	0.630	1.035	1.875	0.837	2.875	1.989	0.378	0.156	2.670	1.599	0.496	2.643	2.038	0.277
916	chr1	231813275	231836453	+	0	NA	intron (NM_001164556, intron 1 of 4)	intron (NM_001164556, intron 1 of 4)	62303	NM_001164541	27185	Hs.13318	NM_018662	ENSG00000162946	DISC1	C1orf136|SCZD9	disrupted in schizophrenia 1	protein-coding	1.755	3.230	3.496	2.976	1.530	0.834	1.644	0.220	0.083	0.392	0.224	0.294	6.613	0.046	0.091	0.420	0.213	2.062	2.642	1.680	1.546	nan	3.095	0.222	0.278	0.664	0.979	nan	1.201	1.458	1.825	0.112	0.137	0.563	0.821	0.493	1.061	nan	0.735	0.283	0.158	0.119	2.354	1.644	0.294	0.826	0.729	0.017	0.165
3646	chr18	3831563	3848303	+	0	NA	intron (NM_004746, intron 4 of 12)	intron (NM_004746, intron 4 of 12)	5425	NM_001242766	9229	Hs.594640	NM_004746	ENSG00000170579	DLGAP1	DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1	DLG associated protein 1	protein-coding	0.957	1.013	0.915	0.136	0.285	0.124	0.490	0.115	0.133	0.177	0.102	4.222	nan	0.091	0.103	0.596	0.416	0.221	0.217	2.254	2.990	nan	0.193	0.449	0.377	1.240	nan	1.038	0.977	nan	0.364	0.231	0.331	0.329	0.300	0.261	nan	nan	0.535	2.607	0.884	0.034	0.138	0.490	4.222	0.064	0.024	0.107	0.155
7996	chr8	144812725	144825640	+	0	NA	intron (NR_033849, intron 2 of 3)	intron (NR_033849, intron 2 of 3)	2872	NR_033849	100128338	Hs.493171	NR_033849	ENSG00000203499	FAM83H-AS1	onco-lncRNA-3	FAM83H antisense RNA 1 (head to head)	ncRNA	2.420	1.855	nan	3.699	1.294	0.886	0.463	0.070	0.102	0.511	0.284	3.446	6.964	0.638	0.040	2.641	3.456	1.194	2.034	nan	3.679	nan	0.777	10.981	11.513	0.082	0.267	4.487	5.860	0.981	1.177	2.173	3.142	1.868	1.127	0.209	0.301	1.967	1.076	6.075	0.777	0.245	0.264	0.463	3.446	0.787	1.241	0.943	0.066
4857	chr20	12570340	12580920	+	0	NA	Intergenic	MLT1J2|LTR|ERVL-MaLR	341981	NR_109872	102606466	Hs.602196	NR_109872		LOC102606466	-	uncharacterized LOC102606466	ncRNA	0.850	nan	0.818	1.516	1.451	1.243	0.216	0.043	0.197	0.842	0.292	1.254	0.942	0.041	0.080	3.145	1.973	0.626	0.319	2.100	2.393	7.261	2.073	1.050	0.900	0.519	0.711	3.183	3.759	0.509	0.333	1.082	2.291	2.277	2.338	0.305	0.830	1.479	1.056	0.717	0.885	0.468	0.188	0.216	1.254	0.066	0.369	1.252	0.306
4828	chr20	6364524	6384649	+	0	NA	Intergenic	L1ME3|LINE|L1	-32793	NR_109953	101929244	Hs.542488	NR_109953	ENSG00000229876	CASC20	-	cancer susceptibility candidate 20 (non-protein coding)	ncRNA	0.793	1.595	0.694	0.459	0.265	0.127	0.331	0.075	0.024	0.168	0.129	0.125	0.342	0.044	0.070	0.597	0.316	0.860	1.227	0.389	0.422	4.614	1.814	0.571	0.618	0.205	0.342	1.722	1.818	0.507	0.262	0.169	0.269	0.788	1.313	0.454	1.550	1.074	0.671	0.011	0.040	0.146	0.071	0.331	0.125	0.014	0.212	0.035	0.173
8120	chr9	35903509	35914640	+	0	NA	promoter-TSS (NR_024283)	promoter-TSS (NR_024283)	-406	NR_024283	158376	Hs.302677	NR_024283	ENSG00000235387	LINC00961	SPAR	long intergenic non-protein coding RNA 961	ncRNA	1.682	nan	1.326	0.261	0.297	0.185	0.679	1.940	0.304	0.350	0.200	0.175	2.577	0.204	0.086	0.258	0.209	0.949	1.552	0.884	0.877	0.825	0.258	0.290	0.269	5.124	6.328	1.018	0.895	1.730	1.616	0.360	0.430	0.114	0.122	0.916	2.540	3.206	2.149	2.254	0.241	0.009	0.043	0.679	0.175	0.123	0.728	0.053	0.765
4476	chr2	118469680	118477159	+	0	NA	Intergenic	AluSc5|SINE|Alu	-98836	NM_006773	8886	Hs.744922	NM_006773	ENSG00000088205	DDX18	MrDb	DEAD-box helicase 18	protein-coding	0.538	nan	0.675	0.084	0.379	0.128	0.102	0.060	0.065	0.105	0.086	0.208	nan	0.029	0.060	1.234	2.435	1.025	0.858	0.333	nan	0.173	0.089	0.936	1.001	0.134	0.214	0.219	0.294	0.380	0.242	8.608	5.723	0.033	0.020	0.115	0.523	0.204	0.346	0.030	0.037	0.025	0.075	0.102	0.208		0.095	3.029	0.016
2331	chr13	67891646	67911776	+	0	NA	Intergenic	Intergenic	-44808	NR_130792	100874145	Hs.508194	NR_130792	ENSG00000230040	LINC00364	-	long intergenic non-protein coding RNA 364	ncRNA	nan	1.086	nan	0.061	0.160	0.107	0.165	0.071	0.080	0.094	0.068	0.083	0.294	0.035	0.074	0.506	0.318	0.123	0.097	0.314	0.344	1.756	0.515	0.112	0.111	0.200	0.234	0.205	0.180	0.374	0.171	0.094	0.220	4.096	4.474	0.526	1.612	0.111	0.122	0.014	0.040	0.905	1.089	0.165	0.083	0.019	0.020	0.049	0.251
1902	chr12	31638987	31650761	+	0	NA	intron (NM_144973, intron 2 of 20)	intron (NM_144973, intron 2 of 20)	-97983	NR_046909	100874249	Hs.627628	NR_046909	ENSG00000255867	DENND5B-AS1	-	DENND5B antisense RNA 1	ncRNA	1.433	nan	1.426	0.273	0.365	0.218	0.528	0.223	0.068	0.174	0.119	0.274	0.340	0.086	0.159	0.381	0.361	0.549	1.185	0.536	0.566	0.556	0.269	0.556	0.526	0.660	0.718	0.264	0.253	0.330	0.221	0.141	0.317	3.672	7.000	0.427	0.924	0.692	0.479	0.086	0.068	0.802	0.161	0.528	0.274	0.025	0.121	0.101	0.136
1561	chr11	85950243	85958168	+	0	NA	Intergenic	Intergenic	-1221	NM_001308007	8726	Hs.503510	NM_003797	ENSG00000074266	EED	HEED|WAIT1	embryonic ectoderm development	protein-coding	1.837	2.057	1.574	2.944	2.875	1.864	1.384	0.830	0.060	1.426	0.711	1.934	5.524	2.396	0.087	6.737	5.885	7.426	6.005	5.847	6.541	4.205	3.198	11.327	12.426	3.423	3.660	4.752	6.093	4.605	3.888	3.212	5.500	4.082	4.761	2.982	3.058	2.289	1.270	2.390	2.184	0.864	1.781	1.384	1.934	4.023	1.118	1.386	0.966
7503	chr7	138572108	138577822	+	0	NA	intron (NM_020910, intron 10 of 19)	intron (NM_020910, intron 10 of 19)	91099	NM_020910	57670	Hs.605380	NM_020910	ENSG00000122778	KIAA1549	-	KIAA1549	protein-coding	nan	nan	nan	0.694	2.991	1.550	3.423	0.104	0.113	0.798	0.309	1.972	2.638	0.133	0.210	0.598	0.676	0.392	0.625	0.863	0.827	nan	0.669	0.427	0.757	1.221	nan	0.600	0.896	nan	0.335	0.264	0.491	7.132	9.200	0.404	1.146	1.728	nan	0.165	0.364	1.335	1.500	3.423	1.972	0.067	1.334	0.090	0.173
6316	chr5	71196518	71205204	+	0	NA	Intergenic	Intergenic	185871	NM_004291	9607	Hs.1707	NM_004291	ENSG00000164326	CARTPT	CART	CART prepropeptide	protein-coding	1.453	nan	1.227	0.102	6.179	3.379	3.688	0.252	0.038	0.616	0.316	0.128	1.550	0.025	0.068	0.267	0.572	0.511	0.559	0.422	0.455	10.475	3.860	0.128	0.158	0.828	nan	0.644	0.674	1.978	1.764	0.599	1.669	8.781	12.082	0.896	3.404	2.414	0.944	0.287	1.107	3.127	0.458	3.688	0.128	0.224	0.233	2.457	1.371
2001	chr12	66111338	66138473	+	0	NA	Intergenic	Intergenic	-88753	NR_120431	100507065	Hs.591038	NR_120431		LOC100507065	-	uncharacterized LOC100507065	ncRNA	0.723	0.580	0.632	0.069	0.161	0.065	0.081	0.150	0.047	0.058	0.107	0.053	0.228	6.094	0.166	0.231	0.126	0.252	0.443	0.331	nan	0.116	0.060	0.136	0.129	0.156	0.237	0.405	0.504	0.775	0.624	0.196	0.316	0.035	0.056	0.752	1.304	0.185	0.332	0.008	0.049	0.007	0.041	0.081	0.053	0.018	0.019	0.070	0.475
4394	chr2	68448044	68481851	+	0	NA	intron (NM_000945, intron 1 of 5)	intron (NM_000945, intron 1 of 5)	14704	NM_000945	5534	Hs.280604	NM_000945	ENSG00000221823	PPP3R1	CALNB1|CNB|CNB1	protein phosphatase 3 regulatory subunit B, alpha	protein-coding	1.989	1.139	nan	0.936	1.168	0.579	0.827	0.878	0.122	0.477	0.265	0.949	2.119	0.818	0.144	0.944	1.045	1.398	1.478	1.797	1.728	nan	0.689	2.862	2.881	0.994	1.387	1.526	2.603	1.794	1.549	0.859	1.583	0.607	0.836	2.814	5.380	0.663	0.336	0.573	1.004	0.175	0.444	0.827	0.949	0.176	0.481	0.459	1.246
3731	chr18	32816384	32822851	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-1377	NM_032347	84307	Hs.591061	NM_032347	ENSG00000186812	ZNF397	ZNF47|ZSCAN15	zinc finger protein 397	protein-coding	nan	2.707	2.656	3.513	5.181	3.101	5.500	1.615	0.332	1.332	0.670	6.032	5.762	1.712	0.132	4.457	4.028	3.222	4.958	7.266	6.370	7.301	3.884	4.336	4.087	1.991	2.273	nan	12.289	4.225	4.499	0.883	2.055	4.501	4.606	3.431	3.245	6.243	3.161	2.074	1.421	0.724	1.231	5.500	6.032	0.658	1.575	0.624	1.236
3216	chr16	87955743	87991327	+	0	NA	Intergenic	(TAGA)n|Simple_repeat|Simple_repeat	-3423	NM_001739	763	Hs.177446	NM_001739	ENSG00000174990	CA5A	CA5|CA5AD|CAV|CAVA|GS1-21A4.1	carbonic anhydrase 5A	protein-coding	nan	1.933	1.704	3.013	2.353	1.172	3.114	0.379	0.117	0.843	0.500	2.395	4.137	0.561	0.083	1.322	1.432	1.031	1.817	4.748	3.934	5.704	2.493	2.011	2.157	0.618	0.933	3.010	4.275	2.736	3.054	1.037	1.394	2.197	2.269	1.277	1.350	3.273	1.766	1.510	1.804	0.468	0.696	3.114	2.395	0.617	3.936	0.426	0.342
4357	chr2	53808941	53815354	+	0	NA	Intergenic	AluSx|SINE|Alu	-182773	NM_001346127	494143	Hs.585944	NM_001008708	ENSG00000143942	CHAC2	-	ChaC cation transport regulator homolog 2	protein-coding	7.755	nan	7.422	0.231	2.220	1.025	0.413	0.642	0.251	0.162	0.141	0.265	0.421	0.102	0.081	0.330	0.251	0.224	0.278	0.411	0.467	4.819	2.581	9.374	9.984	0.456	0.807	4.821	6.500	0.524	0.282	0.333	0.564	37.890	41.824	0.455	0.915	0.472	0.351	0.060	0.171	17.497	0.063	0.413	0.265	0.079	1.773	0.108	0.249
5796	chr3	194405934	194413761	+	0	NA	TTS (NM_153690)	TTS (NM_153690)	3225	NM_153690	131583	Hs.435080	NM_153690	ENSG00000185112	FAM43A	-	family with sequence similarity 43 member A	protein-coding	nan	1.869	1.316	1.592	4.616	2.522	1.308	4.115	0.394	0.159	0.242	0.904	11.082	0.331	0.058	0.285	0.433	0.933	1.609	1.787	1.628	0.849	0.323	0.985	1.118	0.358	0.709	2.618	1.808	3.675	4.696	0.275	0.619	1.873	2.348	0.466	0.969	0.395	0.430	3.252	3.753	0.660	0.566	1.308	0.904	0.975	0.104	0.152	0.539
6670	chr6	25310315	25337911	+	0	NA	intron (NM_001173977, intron 2 of 36)	intron (NM_001173977, intron 2 of 36)	44457	NM_001173977	55604	Hs.649550	NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding	1.761	1.030	nan	0.318	0.297	0.192	0.739	0.702	0.131	0.220	0.143	0.455	nan	0.121	0.110	0.480	0.451	0.405	nan	0.323	0.459	nan	0.776	0.391	0.370	3.679	5.073	0.471	0.551	0.623	0.454	0.211	0.280	2.437	3.329	0.786	1.861	0.867	0.676	0.121	0.135	0.991	0.133	0.739	0.455	0.384	0.048	0.039	0.318
4234	chr2	16340937	16351780	+	0	NA	Intergenic	Intergenic	155809	NR_126559	104797537	Hs.435748	NR_126559	ENSG00000236289	GACAT3	LINC01458|lncRNA-AC130710	gastric cancer associated transcript 3 (non-protein coding)	ncRNA	0.641	0.340	0.664	0.518	0.112	0.084	0.062	0.047	0.196	0.057	0.162	0.044	0.447	0.061	0.113	0.495	0.411	0.380	0.208	0.226	0.219	0.337	0.105	0.403	0.578	0.178	0.253	0.193	nan	0.393	0.194	20.533	22.123	0.027	0.040	0.207	nan	0.128	0.252	0.052	0.147	0.017	0.050	0.062	0.044	0.027	0.028	15.331	0.012
3695	chr18	24227866	24242007	+	0	NA	intron (NM_001258222, intron 1 of 4)	intron (NM_001258222, intron 1 of 4)	2429	NM_001258222	284252	Hs.526630	NM_198991	ENSG00000134504	KCTD1	C18orf5|SENS	potassium channel tetramerization domain containing 1	protein-coding	0.912	1.810	1.950	1.106	0.605	0.373	3.524	0.071	0.057	0.766	0.488	0.177	3.417	0.184	0.096	3.281	4.460	11.594	11.736	4.782	3.740	0.787	0.302	12.762	13.691	0.219	0.317	1.562	2.195	0.943	0.820	3.841	7.373	0.233	0.287	1.854	3.347	3.453	2.170	0.102	0.351	0.060	0.273	3.524	0.177	0.331	0.424	5.148	0.464
1239	chr10	123911630	123932097	+	0	NA	intron (NM_206862, intron 7 of 22)	intron (NM_206862, intron 7 of 22)	-1078	NM_206860	10579	Hs.501252	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	transforming acidic coiled-coil containing protein 2	protein-coding	nan	1.343	1.851	0.940	1.623	0.948	0.875	0.633	0.190	0.734	0.359	2.873	1.358	0.063	0.074	1.542	2.200	0.555	0.745	2.811	2.212	1.743	0.787	0.392	0.372	0.935	1.295	4.432	6.371	0.968	1.252	0.563	0.755	0.894	0.682	0.707	0.860	1.735	1.053	1.263	3.182	0.246	0.861	0.875	2.873	0.513	1.167	0.252	0.206
7600	chr8	13889422	13898415	+	0	NA	Intergenic	MER46C|DNA|TcMar-Tigger	406719	NR_134450	102725080	Hs.130621	NR_134450		LOC102725080	-	uncharacterized LOC102725080	ncRNA	0.425	0.622	nan	0.029	0.067	0.071	0.071	0.051	0.054	0.105	0.116	0.045	0.086	0.024	0.109	0.626	0.346	7.058	3.496	0.220	nan	0.103	0.079	0.206	0.228	0.126	0.156	0.151	0.137	0.281	0.096	0.088	0.176	0.051	0.061	0.171	0.182	0.441	0.699	0.025	0.030	0.011	0.009	0.071	0.045	0.021	0.091		0.084
1809	chr12	7524336	7529017	+	0	NA	intron (NM_001297650, intron 13 of 19)	MER107|DNA|DNA	69748	NM_001080454	341392	Hs.450804	NM_001080454	ENSG00000215009	ACSM4	-	acyl-CoA synthetase medium-chain family member 4	protein-coding	0.681	nan	nan	0.191	0.189	0.070	0.027	0.047	0.068	0.034	0.174	0.076	0.240	0.046	0.113	0.290	0.245	0.341	0.218	nan	0.387	0.435	0.180	0.443	0.445	0.139	0.180	0.140	0.113	7.671	7.383	0.163	0.214	0.049	0.087	0.173	nan	0.093	0.187	0.012	0.020	0.102	0.626	0.027	0.076	6.512	0.413	0.085	0.079
2744	chr14	93417866	93437930	+	0	NA	intron (NM_001142593, intron 7 of 10)	intron (NM_001142593, intron 7 of 10)	38453	NM_001275	1113	Hs.150793	NM_001275	ENSG00000100604	CHGA	CGA	chromogranin A	protein-coding	1.225	0.741	nan	2.604	0.542	0.254	0.585	0.185	0.184	1.268	0.892	0.995	3.197	0.086	0.098	0.415	0.706	0.246	0.495	2.838	2.643	2.531	0.544	0.582	0.652	0.636	1.051	5.000	4.132	1.624	1.665	0.380	0.519	0.921	0.824	0.513	1.165	nan	1.638	0.747	1.042	0.247	0.256	0.585	0.995	0.129	2.557	0.074	0.216
6816	chr6	53502715	53517186	+	0	NA	Intergenic	X6B_LINE|LINE|CR1	16772	NR_125841	101927171	Hs.334005	NR_125841	ENSG00000235899	LINC01564	TCONS_00011314|XLOC_005327	long intergenic non-protein coding RNA 1564	ncRNA	1.853	1.405	nan	0.984	0.284	0.112	0.564	0.373	0.133	0.463	0.324	0.628	1.328	0.075	0.141	1.629	1.671	0.552	0.822	0.812	0.724	1.422	0.468	2.445	2.828	0.771	0.918	3.215	3.998	1.178	1.307	0.824	1.193	1.520	1.229	2.237	6.133	1.670	0.916	0.316	0.680	0.195	0.216	0.564	0.628	0.174	0.531	0.442	1.678
3199	chr16	84763198	84769190	+	0	NA	intron (NM_001272075, intron 2 of 14)	AluSz|SINE|Alu	32639	NM_005153	9100	Hs.136778	NM_005153	ENSG00000103194	USP10	UBPO	ubiquitin specific peptidase 10	protein-coding	nan	1.428	1.014	1.337	0.684	0.367	0.383	1.483	0.160	0.491	0.313	1.224	1.283	0.866	0.058	0.708	0.782	0.965	2.264	0.596	0.577	1.064	0.327	1.135	1.126	2.326	2.476	5.753	8.621	0.960	0.750	0.422	0.585	0.497	2.009	0.540	1.376	1.705	0.943	0.675	0.370	0.078	0.147	0.383	1.224	0.307	4.857	0.202	0.123
5801	chr3	195423774	195460799	+	0	NA	Intergenic	L1ME3|LINE|L1	-5467	NM_152673	200958	Hs.308992	NM_020790	ENSG00000176945	MUC20	MUC-20	mucin 20, cell surface associated	protein-coding	nan	2.210	1.593	0.776	1.515	0.872	0.250	0.223	0.244	0.441	0.342	0.294	nan	0.070	0.118	0.578	0.567	0.971	0.914	1.030	1.050	2.414	0.454	1.363	1.485	0.569	1.005	2.059	2.710	0.687	0.487	0.700	1.036	0.249	0.605	1.976	5.369	1.543	1.256	0.667	0.696	0.046	0.251	0.250	0.294	0.307	0.076	0.333	3.719
4669	chr2	202828845	202855193	+	0	NA	Intergenic	Intergenic	-57291	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled class receptor 7	protein-coding	1.783	nan	3.055	0.180	0.240	0.152	0.587	0.257	0.104	0.166	0.165	0.201	0.960	0.049	0.050	0.421	0.526	0.320	0.607	0.377	0.418	0.106	0.043	0.608	0.607	2.566	3.838	0.666	0.748	0.795	0.737	0.371	0.744	0.261	0.390	0.691	1.536	0.867	0.569	0.840	0.058	0.105	0.507	0.587	0.201	0.655	0.051	0.209	0.363
5287	chr22	43004608	43017624	+	0	NA	promoter-TSS (NM_001278657)	promoter-TSS (NM_001278657)	-135	NR_029422	267010	Hs.574857	NR_029422	ENSG00000276027	RNU12	RNU12-1|RNU12L|RNU12P|dJ222E13.7	RNA, U12 small nuclear	snRNA	2.310	nan	1.489	1.087	2.048	1.145	2.868	0.909	0.187	0.746	0.287	2.123	2.699	2.322	0.134	2.953	3.234	3.095	4.917	3.661	3.736	5.322	3.970	4.095	4.406	2.256	nan	3.050	4.240	nan	3.992	2.208	2.803	2.553	2.988	2.823	2.178	1.271	0.853	0.849	0.967	0.497	0.898	2.868	2.123	0.536	1.131	0.583	0.529
60	chr1	8619350	8633406	+	0	NA	intron (NM_012102, intron 5 of 23)	intron (NM_012102, intron 5 of 23)	-71405	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA	1.389	nan	1.426	0.583	0.449	0.195	0.291	0.482	0.069	0.323	0.301	0.187	0.587	0.510	0.169	0.403	0.401	0.424	1.073	0.987	1.291	1.929	0.757	0.870	0.844	1.664	nan	nan	4.651	nan	0.966	0.390	0.560	0.095	0.215	2.776	6.545	1.264	0.846	0.096	0.189	0.027	0.273	0.291	0.187	0.103	0.145	0.056	1.355
1400	chr11	45292072	45308748	+	0	NA	intron (NM_001247987, intron 1 of 7)	intron (NM_001247987, intron 1 of 7)	7474	NM_020826	57586	Hs.436643	NM_020826	ENSG00000019505	SYT13	-	synaptotagmin 13	protein-coding	nan	1.842	0.616	2.357	2.582	1.349	0.425	0.066	0.079	0.301	0.179	2.719	2.941	0.071	0.105	1.002	1.741	0.382	0.563	1.549	1.573	0.335	0.109	0.154	0.135	0.718	1.162	1.253	1.648	0.576	0.320	0.551	0.983	0.141	0.223	0.146	nan	1.625	1.068	0.525	0.235	0.036	0.205	0.425	2.719	0.092	3.636	0.244	0.045
1067	chr10	22903841	22923487	+	0	NA	intron (NM_005028, intron 1 of 9)	Charlie7|DNA|hAT-Charlie	89373	NM_001330062	5305	Hs.57079	NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding	0.751	1.708	1.134	0.304	0.414	0.259	0.189	4.664	0.467	0.112	0.046	0.209	0.672	0.077	0.082	0.446	0.435	1.382	5.145	0.284	0.425	1.209	0.532	0.169	0.132	1.056	1.454	0.603	0.594	1.155	1.092	0.141	0.240	0.199	0.252	0.379	0.953	0.629	0.439	0.070	0.095	0.024	0.053	0.189	0.209	0.094	0.103	0.041	0.377
691	chr1	180542595	180565843	+	0	NA	Intergenic	Intergenic	26109	NR_125716	148756		NR_125716	ENSG00000236719	OVAAL	LINC01131|OVAL	ovarian adenocarcinoma amplified long non-coding RNA	ncRNA	nan	nan	1.549	0.257	0.533	0.190	2.125	0.298	0.210	0.197	0.277	0.545	1.098	0.076	0.112	0.633	0.523	1.297	2.160	1.413	nan	2.163	0.399	nan	0.345	0.639	0.962	1.287	1.462	0.352	0.160	0.431	0.552	1.108	0.837	0.333	nan	1.842	1.151	2.788	0.220	0.268	0.085	2.125	0.545	0.067	0.074	0.102	0.064
2615	chr14	58035189	58050882	+	0	NA	intron (NM_001206920, intron 4 of 7)	intron (NM_001206920, intron 4 of 7)	-82454	NM_001283058	55195	Hs.659706	NM_018168	ENSG00000100557	C14orf105	-	chromosome 14 open reading frame 105	protein-coding	nan	nan	1.841	0.148	0.275	0.145	0.783	0.059	0.102	0.110	0.138	0.069	0.381	0.024	0.102	0.353	0.304	0.606	0.438	0.337	0.472	0.191	0.114	0.347	0.380	0.193	0.252	0.333	0.303	0.784	0.303	0.288	0.567	0.162	0.328	4.218	10.989	nan	0.481	0.135	0.192	0.060	0.064	0.783	0.069	0.037	0.059	0.119	7.384
5173	chr21	47736285	47748164	+	0	NA	intron (NM_001286477, intron 1 of 7)	intron (NM_001286477, intron 1 of 7)	-1485	NM_001286462	54058	Hs.236572	NM_058180	ENSG00000160298	C21orf58	-	chromosome 21 open reading frame 58	protein-coding	nan	2.645	6.579	3.925	3.443	1.918	2.554	1.221	0.263	1.655	0.610	4.653	9.294	2.086	0.114	4.343	4.613	4.738	5.693	6.230	6.282	nan	2.037	6.193	5.720	2.805	nan	4.413	7.548	5.398	5.976	2.304	3.935	2.442	2.767	4.527	3.431	3.139	1.853	3.189	5.194	0.677	2.543	2.554	4.653	1.104	1.349	1.433	1.062
3134	chr16	49525070	49535099	+	0	NA	intron (NM_001330533, intron 5 of 5)	MIRb|SINE|MIR	22412	NR_144553	1596	Hs.684517	NR_144553		ADAM3B	CYRN2	ADAM metallopeptidase domain 3B (pseudogene)	pseudo	1.242	0.713	3.033	0.061	0.406	0.224	1.530	0.066	0.017	0.047	0.048	0.155	0.195	0.066	0.049	0.464	0.643	0.117	0.079	1.854	2.048	0.551	0.278	0.158	0.135	2.572	2.988	0.339	0.536	5.792	6.937	0.378	0.331	1.172	0.897	0.741	0.855	0.895	0.595	0.050	0.398	0.458	0.268	1.530	0.155	2.648	0.041	0.069	0.330
5245	chr22	33955403	33974150	+	0	NA	intron (NM_004737, intron 6 of 15)	intron (NM_004737, intron 6 of 15)	-132121	NR_039921	100616295		NR_039921	ENSG00000266012	MIR4764	-	microRNA 4764	ncRNA	nan	0.529	0.722	0.225	0.356	0.205	3.180	0.080	0.052	0.083	0.062	0.239	4.231	0.023	0.071	0.304	0.306	0.179	nan	0.292	0.336	2.340	1.100	0.088	0.109	0.139	nan	2.390	4.104	0.331	0.256	0.185	0.176	0.047	0.081	0.413	nan	0.558	0.494	0.032	1.924	0.021	0.119	3.180	0.239	0.010	0.054	0.068	0.379
5453	chr3	107882689	107909288	+	0	NA	intron (NM_018010, intron 6 of 10)	intron (NM_018010, intron 6 of 10)	45429	NM_018010	55081	Hs.412196	NM_018010	ENSG00000114446	IFT57	ESRRBL1|HIPPI|MHS4R2	intraflagellar transport 57	protein-coding	nan	nan	0.934	0.124	3.977	1.992	0.168	0.189	0.143	1.941	1.331	2.002	0.199	0.024	0.079	0.323	0.264	0.446	0.471	0.849	1.275	6.914	4.285	0.257	0.249	0.525	0.805	0.217	0.237	0.663	0.321	0.124	0.184	1.601	1.899	0.356	0.766	2.071	0.870	0.044	0.073	0.519	0.105	0.168	2.002	0.036	0.181	0.082	0.155
3171	chr16	72938957	73106200	+	0	NA	intron (NM_006885, intron 1 of 9)	intron (NM_006885, intron 1 of 9)	59696	NM_006885	463	Hs.598297	NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding	0.840	1.452	nan	1.417	1.111	0.552	0.796	0.812	0.152	0.389	0.266	1.157	1.775	0.370	0.080	2.443	2.781	5.307	7.082	1.321	1.228	0.698	0.223	3.959	4.067	0.828	1.254	1.675	2.378	1.457	1.098	0.930	1.638	0.309	0.394	0.375	0.616	1.339	0.855	0.543	0.582	0.047	0.193	0.796	1.157	0.159	1.091	0.705	0.195
427	chr1	102453658	102463931	+	0	NA	intron (NM_001288823, intron 1 of 6)	intron (NM_001288823, intron 1 of 6)	3996	NM_001288823	118427	Hs.484475	NM_058170	ENSG00000118733	OLFM3	NOE3|NOELIN3|OPTIMEDIN	olfactomedin 3	protein-coding	1.017	nan	nan	0.209	0.176	0.047	0.311	0.108	0.064	0.153	0.160	0.432	4.242	0.075	0.097	1.391	2.356	0.610	1.854	0.949	nan	0.081	0.093	0.247	0.215	5.298	5.725	nan	nan	0.973	0.858	0.543	1.692	0.381	0.365	0.897	nan	1.088	0.587	0.032	0.035	0.083	0.101	0.311	0.432		0.841	0.538	0.494
5121	chr21	39281070	39289611	+	0	NA	intron (NM_002240, intron 1 of 3)	intron (NM_002240, intron 1 of 3)	3401	NM_002240	3763	Hs.626242	NM_002240	ENSG00000157542	KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|KPLBS|hiGIRK2	potassium voltage-gated channel subfamily J member 6	protein-coding	1.964	0.984	1.452	0.950	2.036	0.846	0.211	0.096	0.076	0.089	0.117	2.716	0.726	0.051	0.064	0.961	0.982	0.118	0.104	5.280	4.745	0.369	0.092	0.099	0.117	4.704	6.075	1.638	2.276	3.606	3.274	0.589	1.151	1.654	1.194	0.419	0.789	nan	1.419	0.059	0.063	0.324	0.267	0.211	2.716	1.227	0.618	0.358	0.189
6593	chr6	5554529	5570431	+	0	NA	intron (NM_006567, intron 5 of 6)	intron (NM_006567, intron 5 of 6)	-104172	NR_125846	101927972	Hs.668417	NR_125846	ENSG00000269985	LOC101927972	-	uncharacterized LOC101927972	ncRNA	1.380	0.979	1.277	0.160	0.234	0.151	0.124	0.324	0.131	0.068	0.083	0.368	0.102	0.099	0.133	0.328	0.300	0.682	0.714	0.354	0.374	0.268	0.079	0.334	0.279	0.551	0.741	0.257	0.222	1.062	0.826	0.128	0.198	0.097	0.119	2.179	6.356	0.664	0.470	0.038	0.055	0.042	0.060	0.124	0.368	0.048	0.134	0.050	1.351
4735	chr2	223517742	223522355	+	0	NA	intron (NM_005687, intron 1 of 16)	intron (NM_005687, intron 1 of 16)	1026	NR_130154	10056	Hs.471452	NM_005687	ENSG00000116120	FARSB	FARSLB|FRSB|HSPC173|PheHB|PheRS	phenylalanyl-tRNA synthetase beta subunit	protein-coding	nan	3.667	3.958	5.793	6.972	3.283	6.181	2.823	0.278	3.596	2.196	6.726	nan	3.491	0.252	10.239	7.649	8.647	11.101	8.376	8.940	6.905	5.763	16.925	18.038	5.271	6.520	9.506	15.874	10.809	10.293	8.489	9.296	5.328	7.393	7.515	nan	4.221	2.285	3.356	2.253	0.993	1.714	6.181	6.726	1.758	2.224	2.384	2.621
82	chr1	11066855	11077456	+	0	NA	promoter-TSS (NM_007375)	promoter-TSS (NM_007375)	-524	NM_007375	23435	Hs.300624	NM_007375	ENSG00000120948	TARDBP	ALS10|TDP-43	TAR DNA binding protein	protein-coding	2.459	1.713	nan	8.716	2.084	1.302	1.801	1.333	0.274	0.521	0.393	1.264	3.967	1.507	0.145	2.833	2.511	3.380	4.632	5.069	6.054	2.142	2.160	7.150	nan	1.948	nan	9.452	11.480	nan	3.357	2.602	2.778	1.293	1.860	4.044	2.766	2.046	0.927	1.824	1.160	0.251	0.360	1.801	1.264	0.531	0.872	0.344	0.771
3464	chr17	55160652	55176405	+	0	NA	intron (NM_001242902, intron 2 of 11)	intron (NM_001242902, intron 2 of 11)	5393	NM_001242902	8165	Hs.463506	NM_003488	ENSG00000121057	AKAP1	AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17	A-kinase anchoring protein 1	protein-coding	2.077	2.047	2.306	1.986	2.717	1.224	1.445	0.893	0.211	1.171	0.627	2.206	5.883	0.909	0.121	2.619	3.576	1.896	3.112	2.809	2.236	2.952	1.260	nan	3.928	1.619	2.178	nan	nan	2.726	2.625	1.413	2.538	2.023	1.845	1.693	2.450	1.848	1.120	1.009	2.876	0.429	0.872	1.445	2.206	0.344	0.786	0.728	0.736
1763	chr12	2031116	2037280	+	0	NA	Intergenic	Intergenic	-6328	NM_172364	93589	Hs.13768	NM_172364	ENSG00000151062	CACNA2D4	RCD4	calcium voltage-gated channel auxiliary subunit alpha2delta 4	protein-coding	1.387	nan	nan	0.255	0.379	0.233	1.151	0.390	0.235	0.152	0.122	0.249	0.860	0.142	0.089	0.191	0.392	0.172	0.155	nan	0.939	0.480	0.114	0.235	0.266	1.852	2.480	0.170	0.398	1.093	0.910	0.396	0.462	0.747	0.630	0.450	nan	1.073	0.679	0.587	0.389	0.339	0.256	1.151	0.249	4.315	0.033	0.415	0.372
4499	chr2	133023020	133030647	+	0	NA	Intergenic	MER39B|LTR|ERV1	-11291	NR_027020	554226	Hs.380689	NR_027019	ENSG00000163046	ANKRD30BL	ANKRD30BP3|NCRNA00164	ankyrin repeat domain 30B like	pseudo	nan	8.393	nan	0.574	1.333	0.438	10.272	0.555	1.543	0.386	0.411	0.893	3.079	0.326	0.323	3.894	3.392	8.145	13.451	6.863	7.003	1.407	0.333	2.500	2.637	1.723	3.247	3.508	nan	3.995	1.723	4.076	6.069	0.775	0.908	0.969	1.561	2.835	3.079	1.779	0.326	0.117	0.387	10.272	0.893	0.179	0.800	1.139	0.163
69	chr1	9596361	9633205	+	0	NA	intron (NM_032315, intron 2 of 6)	intron (NM_032315, intron 2 of 6)	15255	NM_032315	84275	Hs.568613	NM_032315	ENSG00000171612	SLC25A33	BMSC-MCP|PNC1	solute carrier family 25 member 33	protein-coding	1.457	nan	1.198	4.331	0.829	0.435	0.949	0.718	0.460	0.424	0.307	0.263	2.123	0.551	0.144	1.111	1.327	3.172	3.665	1.142	1.232	0.648	0.243	1.691	1.726	1.523	nan	nan	5.622	nan	0.668	0.547	0.896	0.258	0.256	1.063	2.217	0.935	0.564	1.532	2.126	0.052	0.948	0.949	0.263	0.177	0.314	0.705	0.593
4299	chr2	39914111	39934882	+	0	NA	intron (NM_152390, intron 1 of 3)	intron (NM_152390, intron 1 of 3)	31461	NM_152390	130733	Hs.40808	NM_152390	ENSG00000152154	TMEM178A	TMEM178	transmembrane protein 178A	protein-coding	1.417	nan	nan	0.847	1.700	0.848	0.272	0.184	0.116	0.738	0.316	1.636	0.480	0.047	0.121	0.306	0.194	0.243	0.328	0.871	0.810	6.941	3.871	0.512	nan	2.125	2.731	0.585	0.658	nan	1.111	0.147	0.238	2.219	2.300	0.323	0.569	1.200	0.915	0.080	0.120	0.531	0.344	0.272	1.636	0.308	0.029	0.048	0.320
224	chr1	38255333	38265275	+	0	NA	promoter-TSS (NM_152496)	promoter-TSS (NM_152496)	530	NM_001113482	149175	Hs.534562	NM_152496	ENSG00000185090	MANEAL	-	mannosidase endo-alpha like	protein-coding	2.582	nan	1.727	4.643	1.855	1.246	2.309	0.106	0.048	1.469	0.707	6.063	3.284	0.936	0.149	1.964	2.373	0.440	0.500	5.314	4.525	nan	0.758	0.206	0.222	1.835	2.606	15.128	16.761	nan	2.712	3.195	5.166	0.878	0.717	1.805	2.413	1.809	nan	2.275	1.729	0.192	1.030	2.309	6.063	0.527	1.384	1.388	1.023
2711	chr14	81386928	81409539	+	0	NA	intron (NM_152446, intron 1 of 23)	Charlie3|DNA|hAT-Charlie	7651	NM_152446	145508	Hs.162889	NM_152446	ENSG00000100629	CEP128	C14orf145|C14orf61|LEDP/132	centrosomal protein 128	protein-coding	nan	0.873	1.022	0.368	0.548	0.369	0.395	0.374	0.093	0.152	0.163	0.261	1.034	0.383	0.112	0.401	0.494	0.454	0.747	1.060	1.204	0.502	0.200	1.467	1.357	0.757	1.004	0.629	0.666	2.038	1.818	0.296	0.566	0.901	0.904	1.658	6.174	1.340	0.966	0.291	0.420	0.240	0.885	0.395	0.261	0.132	0.157	0.163	1.476
7966	chr8	142005495	142013828	+	0	NA	intron (NM_005607, intron 1 of 31)	intron (NM_005607, intron 1 of 31)	1751	NM_005607	5747	Hs.395482	NM_005607	ENSG00000169398	PTK2	FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding	4.634	2.194	nan	3.890	3.446	1.904	1.604	3.450	0.462	0.655	0.423	3.720	7.711	1.951	0.119	2.088	2.831	3.393	5.440	nan	5.024	nan	1.239	6.895	7.359	1.473	2.149	8.848	10.964	2.324	2.217	1.861	4.116	2.391	2.020	3.146	3.618	1.568	0.839	3.459	3.240	0.618	1.112	1.604	3.720	0.642	2.495	1.145	1.178
2393	chr13	99220942	99235362	+	0	NA	intron (NM_001032296, intron 1 of 10)	intron (NM_001032296, intron 1 of 10)	1253	NM_001286649	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding	2.108	3.587	1.767	1.641	1.754	0.953	2.568	1.527	0.202	0.510	0.238	2.097	2.883	0.955	0.105	2.428	2.799	2.913	4.094	4.128	3.556	3.127	1.381	1.596	1.502	0.682	nan	2.702	3.569	1.951	2.011	2.146	4.617	1.532	1.363	1.932	nan	0.450	0.291	4.352	2.759	0.278	1.950	2.568	2.097	0.122	1.692	1.285	0.437
426	chr1	102406363	102443973	+	0	NA	intron (NM_058170, intron 1 of 5)	intron (NM_058170, intron 1 of 5)	37622	NM_001288823	118427	Hs.484475	NM_058170	ENSG00000118733	OLFM3	NOE3|NOELIN3|OPTIMEDIN	olfactomedin 3	protein-coding	0.881	nan	nan	0.107	0.187	0.076	0.102	0.107	0.095	0.066	0.095	0.092	0.363	0.052	0.132	0.312	0.216	0.260	0.413	0.288	nan	0.050	0.027	0.247	0.231	4.845	5.142	nan	nan	0.364	0.155	0.107	0.219	0.248	0.340	0.498	nan	0.453	0.415	0.024	0.038	0.053	0.049	0.102	0.092	0.011	0.141	0.037	0.273
7662	chr8	43092234	43097682	+	0	NA	Intergenic	SAR|Satellite|Satellite	-52627	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding	18.865	18.456	16.489	5.947	12.390	8.563	3.898	8.860	22.028	4.852	8.179	3.832	6.917	2.781	10.022	15.529	10.092	0.923	4.139	12.326	19.015	8.520	8.615	9.256	10.417	12.649	10.932	10.327	9.811	21.665	9.046	16.963	18.157	3.308	6.805	10.463	11.164	11.486	9.908	1.788	3.948	1.643	1.428	3.898	3.832	0.548	1.133	6.149	3.607
3222	chr16	89869351	89897109	+	0	NA	promoter-TSS (NM_001286167)	promoter-TSS (NM_001286167)	-165	NM_000135	2175	Hs.744083	NM_000135	ENSG00000187741	FANCA	FA|FA-H|FA1|FAA|FACA|FAH|FANCH	Fanconi anemia complementation group A	protein-coding	nan	1.634	3.023	1.998	1.637	0.885	1.712	0.486	0.214	0.901	0.587	3.819	3.213	0.812	0.106	1.670	2.084	0.830	1.274	2.367	2.416	2.299	0.751	1.421	1.414	0.869	1.257	2.171	3.352	1.598	1.422	1.001	1.902	1.247	1.408	2.244	3.923	1.590	0.830	1.445	1.740	0.418	0.511	1.712	3.819	0.344	1.144	0.876	1.407
1435	chr11	61193049	61205992	+	0	NA	intron (NM_017841, intron 1 of 3)	AluJb|SINE|Alu	1923	NM_017841	54949	Hs.313247	NM_017841	ENSG00000167985	SDHAF2	C11orf79|PGL2|SDH5	succinate dehydrogenase complex assembly factor 2	protein-coding	nan	1.770	1.635	2.700	2.463	1.364	1.783	1.019	0.173	1.176	0.499	2.362	3.940	1.432	0.169	4.122	3.379	3.059	3.764	7.771	8.400	3.484	2.163	4.890	5.497	2.226	2.853	4.083	6.019	2.742	2.681	3.032	4.228	2.234	2.968	2.155	2.114	1.935	1.146	2.418	1.787	0.311	1.182	1.783	2.362	0.655	0.955	1.040	0.460
279	chr1	44488810	44499573	+	0	NA	intron (NM_001024845, intron 1 of 13)	AluSq2|SINE|Alu	2604	NM_001328629	6536	Hs.442590	NM_006934	ENSG00000196517	SLC6A9	GLYT1	solute carrier family 6 member 9	protein-coding	nan	1.218	5.140	1.215	1.350	0.804	1.470	1.113	0.135	1.123	0.351	3.013	2.638	2.692	0.137	2.648	3.861	1.159	1.693	2.656	2.464	1.763	0.679	2.005	1.938	1.070	nan	nan	11.034	1.603	1.764	3.013	nan	0.850	0.795	1.394	3.520	1.400	0.849	0.646	2.097	0.139	1.377	1.470	3.013	0.678	0.729	1.129	1.009
483	chr1	143726904	143751100	+	0	NA	intron (NR_027468, intron 1 of 4)	L2b|LINE|L2	5517	NR_104014	388685	Hs.713362	NM_207400	ENSG00000274020	LINC01138	LINC00875	long intergenic non-protein coding RNA 1138	ncRNA	1.490	nan	1.301	1.142	0.528	0.259	0.410	0.518	0.186	0.978	0.696	0.869	6.810	2.143	0.174	1.440	1.574	1.529	2.691	1.926	1.831	0.873	0.316	8.896	8.578	0.620	0.853	1.402	1.861	0.712	0.525	4.006	5.045	0.818	0.999	0.681	1.387	0.711	0.574	0.911	3.001	0.624	0.207	0.410	0.869	0.024	3.325	4.049	0.511
4145	chr19	55020682	55033004	+	0	NA	Intergenic	MER31A|LTR|ERV1	12830	NM_021270	3904	Hs.43803	NM_002288	ENSG00000167618	LAIR2	CD306	leukocyte associated immunoglobulin like receptor 2	protein-coding	0.442	0.455	0.477	0.066	0.394	0.198	0.157	0.061	0.116	0.013	0.066	0.164	0.218	0.017	0.110	0.301	0.248	0.072	0.062	0.257	0.239	0.218	0.137	0.131	0.199	0.187	0.317	0.136	0.188	0.255	0.116	0.671	0.709	0.102	0.077	0.099	0.172	4.206	1.941	0.184	0.074	0.023	0.039	0.157	0.164	0.008	5.078	0.452	0.020
2055	chr12	83252551	83275571	+	0	NA	intron (NM_152588, intron 2 of 11)	intron (NM_152588, intron 2 of 11)	183127	NM_001320321	160335	Hs.577775	NM_152588	ENSG00000179104	TMTC2	IBDBP1	transmembrane and tetratricopeptide repeat containing 2	protein-coding	1.027	0.808	0.680	0.086	0.479	0.307	0.786	1.265	0.217	0.116	0.176	0.120	0.325	0.071	0.091	0.431	0.309	0.387	0.324	0.539	0.586	0.255	0.120	1.086	1.173	5.054	5.847	0.578	0.615	0.560	0.316	0.132	0.202	0.806	0.599	0.393	0.674	0.613	0.630	0.017	0.093	0.127	0.407	0.786	0.120	0.827	0.057	0.043	0.133
5576	chr3	140049148	140065547	+	0	NA	intron (NM_022131, intron 2 of 16)	MIRb|SINE|MIR	170284	NR_108084	101927808	Hs.581236	NR_108084	ENSG00000250433	CLSTN2-AS1	-	CLSTN2 antisense RNA 1	ncRNA	1.257	nan	nan	0.151	0.513	0.278	0.311	0.176	0.098	0.258	0.225	0.132	0.315	0.026	0.057	0.334	0.237	0.359	0.538	0.666	0.651	8.333	2.057	0.299	0.262	3.326	3.203	0.756	nan	nan	2.386	0.198	0.444	0.929	0.912	0.817	2.499	0.719	0.572	1.133	0.243	0.347	0.325	0.311	0.132	1.161	0.068	0.055	0.603
1487	chr11	67796656	67809346	+	0	NA	intron (NM_002496, intron 5 of 6)	Tigger1a_Art|DNA|TcMar-Tigger	1637	NR_039840	100616403		NR_039840	ENSG00000110717	MIR4691	mir-4691	microRNA 4691	ncRNA	nan	1.519	1.255	2.270	1.753	1.036	1.559	0.909	0.305	0.716	0.372	1.680	3.369	2.475	0.136	3.043	3.134	2.016	3.309	2.921	2.850	3.498	1.068	2.815	2.804	1.554	2.377	3.277	5.008	2.222	2.061	1.989	2.701	1.386	1.648	1.176	1.429	1.503	0.817	0.874	0.973	0.286	0.708	1.559	1.680	0.366	3.097	0.592	0.427
4698	chr2	211610007	211622823	+	0	NA	Intergenic	Intergenic	134120	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA	nan	1.040	nan	0.123	0.407	0.158	0.332	0.106	0.050	0.048	0.117	0.134	0.407	0.025	0.096	0.296	0.264	0.241	0.609	0.263	0.313	0.375	0.136	0.378	0.355	0.190	0.274	0.347	nan	1.184	0.632	0.118	0.223	0.065	0.067	2.637	7.307	0.318	0.468	0.031	0.025		0.102	0.332	0.134	0.054	0.090	0.024	2.645
1540	chr11	78007258	78031612	+	0	NA	intron (NM_080491, intron 1 of 9)	intron (NM_080491, intron 1 of 9)	33491	NM_012296	9846	Hs.429434	NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding	nan	0.969	1.062	0.250	1.183	0.628	0.321	0.335	0.128	0.432	0.326	0.388	0.763	0.506	0.153	3.046	4.381	3.730	3.168	1.183	1.387	1.531	0.628	1.904	2.114	0.977	1.388	0.382	0.389	0.511	0.273	2.105	4.510	0.488	0.518	0.780	1.992	0.863	0.703	0.639	0.483	0.141	1.025	0.321	0.388	0.083	0.110	5.940	0.560
7360	chr7	82065084	82084717	+	0	NA	Intergenic	Intergenic	-1778	NM_001302890	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding	2.526	1.895	1.090	1.031	2.894	1.743	1.626	0.646	0.090	1.795	1.437	2.548	4.980	1.401	0.228	2.125	3.141	0.604	0.631	4.525	4.610	3.540	1.571	0.410	0.524	2.839	3.547	1.308	2.303	4.725	5.016	0.370	0.788	5.841	5.262	4.838	nan	2.168	1.237	4.170	1.081	1.481	1.640	1.626	2.548	0.653	1.149	0.170	1.243
3075	chr16	19176801	19197998	+	0	NA	intron (NM_001330509, intron 3 of 7)	intron (NM_001330509, intron 3 of 7)	3720	NM_001308157	51760	Hs.258326	NM_016524	ENSG00000103528	SYT17	sytXVII	synaptotagmin 17	protein-coding	1.414	0.956	nan	1.084	0.913	0.575	1.015	0.270	0.114	0.252	0.195	1.153	2.667	0.282	0.096	0.227	0.102	0.094	0.131	0.719	0.618	1.832	0.602	0.107	0.097	0.086	0.195	6.448	6.602	nan	0.439	0.108	0.112	0.754	0.540	0.293	0.517	0.548	0.531	1.347	1.433	0.279	0.559	1.015	1.153	0.064	0.696	0.027	0.075
2064	chr12	86126554	86147088	+	0	NA	Intergenic	L1MA1|LINE|L1	93497	NM_005447	9182	Hs.527881	NM_005447	ENSG00000198774	RASSF9	P-CIP1|PAMCI|PCIP1	Ras association domain family member 9	protein-coding	0.738	0.728	0.645	0.180	0.516	0.320	0.056	0.374	0.134	0.360	0.227	0.373	0.448	0.053	0.113	0.372	0.274	0.284	0.226	0.323	0.435	2.023	0.744	0.229	0.231	5.683	5.580	0.767	0.546	0.475	0.240	0.130	0.293	0.308	0.374	0.266	0.403	0.813	0.566	0.013	0.086	0.046	0.069	0.056	0.373		0.114	0.071	0.060
7983	chr8	143368852	143384905	+	0	NA	intron (NM_001291931, intron 8 of 10)	intron (NM_001291931, intron 8 of 10)	97161	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	ncRNA	1.374	1.212	nan	0.928	0.795	0.449	0.440	0.042	0.020	0.283	0.219	1.684	3.811	0.047	0.061	0.529	0.818	0.109	0.202	nan	5.350	nan	0.245	0.391	0.431	0.625	0.829	0.828	1.332	1.040	1.001	0.454	0.617	0.367	0.268	0.274	0.374	1.713	0.969	5.404	2.538	0.048	0.114	0.440	1.684	0.464	0.172	0.067	0.133
99	chr1	15849338	15855577	+	0	NA	promoter-TSS (NR_109898)	promoter-TSS (NR_109898)	-851	NM_001287811	23341	Hs.655410	NM_015291	ENSG00000116138	DNAJC16	-	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	3.055	2.423	nan	10.916	3.177	1.617	1.601	1.203	0.105	1.500	0.501	1.058	10.730	3.527	0.164	3.025	3.627	3.268	4.185	6.382	5.250	4.479	2.429	8.318	nan	3.365	nan	11.102	16.115	nan	2.337	1.775	2.514	2.236	1.694	4.190	4.388	2.832	1.091	2.300	2.767	0.182	0.919	1.601	1.058	0.920	1.823	0.852	0.928
4767	chr2	236507871	236524872	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	101976	NR_131900	100506749	Hs.684184	NR_131900	ENSG00000235529	AGAP1-IT1	-	AGAP1 intronic transcript 1	ncRNA	1.800	nan	1.048	0.542	0.575	0.274	0.982	0.321	0.019	0.858	0.699	0.709	0.656	0.076	0.139	0.771	0.861	0.249	0.320	0.751	0.835	3.545	0.678	0.366	0.423	0.571	0.706	0.700	nan	4.348	4.726	0.278	0.367	2.990	3.503	0.122	0.235	1.577	0.849	0.249	0.377	1.009	1.646	0.982	0.709	0.787	0.072	0.110	0.061
5424	chr3	89002444	89011598	+	0	NA	Intergenic	Intergenic	-149653	NM_005233	2042	Hs.123642	NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding	nan	0.668	0.461	0.049	0.044	0.035	0.112	0.106	0.017	0.103	0.106	0.052	0.171	0.047	0.138	0.197	0.123	0.394	0.898	0.209	0.247	0.142	0.073	0.172	0.096	5.255	6.031	0.096	0.145	0.350	0.187	0.103	0.116	0.023	0.066	0.287	0.518	0.320	0.350	0.012				0.112	0.052		0.034	0.011	0.054
5218	chr22	25957281	25973042	+	0	NA	intron (NM_005160, intron 1 of 20)	intron (NM_005160, intron 1 of 20)	4300	NM_005160	157	Hs.657494	NM_005160	ENSG00000100077	GRK3	ADRBK2|BARK2	G protein-coupled receptor kinase 3	protein-coding	1.328	nan	1.134	0.294	1.417	0.747	0.438	0.449	0.185	0.186	0.087	0.327	1.062	0.440	0.095	0.747	0.969	0.329	0.504	0.916	0.813	0.919	0.292	0.774	0.754	3.386	4.088	1.040	1.289	1.952	1.802	1.284	2.266	1.852	1.791	0.955	1.687	1.812	1.346	0.109	0.390	0.423	0.271	0.438	0.327	0.327	0.329	1.790	0.306
7758	chr8	76318780	76334812	+	0	NA	intron (NM_001330561, intron 1 of 11)	L1ME1|LINE|L1	6891	NM_001330561	3174	Hs.241529	NM_004133	ENSG00000164749	HNF4G	NR2A2|NR2A3	hepatocyte nuclear factor 4 gamma	protein-coding	2.191	0.828	1.025	0.253	2.255	1.150	0.449	0.954	0.100	0.879	0.517	0.253	0.727	0.490	0.101	0.739	0.499	3.067	3.986	1.241	1.101	0.782	0.279	1.998	1.860	1.250	1.494	1.251	1.939	0.802	0.659	2.119	3.080	4.694	3.526	0.372	0.502	1.571	1.391	0.021	0.338	0.975	0.045	0.449	0.253	0.012	0.602	2.080	0.093
6295	chr5	67663389	67681764	+	0	NA	Intergenic	Intergenic	84180	NM_001242466	5295	Hs.132225	NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.599	1.522	0.528	0.119	0.213	0.131	0.191	0.114	0.088	0.095	0.091	0.097	1.352	0.054	0.097	0.676	0.560	3.377	5.031	0.251	0.280	0.123	0.072	0.592	0.597	0.520	0.637	0.214	0.230	0.411	0.173	0.913	1.375	0.314	0.419	0.154	0.278	0.386	0.347	0.348	0.144	0.057	0.061	0.191	0.097	0.074	0.011	1.139	0.114
5164	chr21	45915653	45921062	+	0	NA	3' UTR (NM_144991, exon 12 of 12)	3' UTR (NM_144991, exon 12 of 12)	-7570	NR_103707	54082	Hs.570444	NR_103707	ENSG00000235890	TSPEAR-AS1	C21orf31	TSPEAR antisense RNA 1	ncRNA	nan	2.047	0.938	2.209	3.465	1.866	0.733	0.125		0.666	0.394	3.936	13.387	0.059	0.119	0.193	0.148	0.906	0.571	11.861	10.949	nan	0.650	0.194	0.241	0.127	nan	1.398	1.783	0.505	0.225	0.805	1.288	3.301	2.256	0.093	0.152	6.905	3.391	7.370	8.055	0.322		0.733	3.936	0.162	0.957	0.720	0.024
533	chr1	150668384	150677972	+	0	NA	intron (NM_032132, intron 13 of 14)	L1MB8|LINE|L1	-3506	NM_018178	55204	Hs.203699	NM_018178	ENSG00000143457	GOLPH3L	GPP34R	golgi phosphoprotein 3 like	protein-coding	nan	nan	1.899	1.341	0.927	0.411	0.428	0.285	0.146	1.194	0.610	1.208	3.337	0.498	0.126	4.797	5.105	1.835	1.585	2.481	nan	3.221	2.492	1.837	1.862	1.064	1.299	2.194	2.824	1.122	0.710	5.222	9.024	1.146	0.847	1.803	2.966	1.431	0.987	0.236	1.284	0.129	0.588	0.428	1.208	0.050	1.036	7.619	0.373
4446	chr2	99384132	99393911	+	0	NA	promoter-TSS (NR_126337)	promoter-TSS (NR_126337)	-660	NR_126337	101927070	Hs.469395	NR_126337		LOC101927070	-	uncharacterized LOC101927070	ncRNA	1.370	2.039	5.252	2.247	0.716	0.541	0.381	0.068	0.016	0.864	0.458	1.950	6.762	0.022	0.071	1.837	1.928	0.544	0.821	1.911	1.574	4.871	1.394	1.125	1.052	0.763	1.342	4.015	3.710	1.893	2.055	1.203	1.435	2.346	2.910	0.194	0.288	2.378	1.367	1.096	1.052	0.323	0.385	0.381	1.950	0.619	3.810	0.414	0.026
2080	chr12	92932186	92956708	+	0	NA	Intergenic	MIR|SINE|MIR	83992	NR_144532	100507616	Hs.339918	NR_144532		LOC100507616	-	uncharacterized LOC100507616	ncRNA	1.481	1.358	0.862	0.341	0.538	0.281	0.349	0.681	0.250	0.180	0.146	0.290	nan	0.049	0.122	0.427	0.381	0.625	1.920	0.760	0.891	0.563	0.233	0.323	0.394	3.104	nan	0.870	nan	0.602	0.572	0.545	1.043	0.401	0.392	0.371	0.849	1.841	1.063	1.138	0.185	0.043	0.349	0.349	0.290	0.406	0.182	0.708	0.136
4448	chr2	99513588	99556579	+	0	NA	intron (NM_207362, intron 1 of 9)	L1PB4|LINE|L1	17601	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211 like	protein-coding	1.382	1.717	2.219	1.475	3.082	1.689	0.432	0.113	0.075	0.335	0.213	3.768	3.055	0.076	0.075	0.330	0.236	0.294	0.431	9.129	8.027	3.224	0.548	0.610	0.646	0.228	0.456	2.707	2.675	0.695	0.459	0.330	0.452	1.131	1.140	0.306	0.549	1.393	0.720	5.803	2.162	0.292	0.141	0.432	3.768	0.107	0.229	0.233	0.092
2416	chr13	103012299	103029757	+	0	NA	intron (NR_125912, intron 1 of 1)	intron (NR_125912, intron 1 of 1)	1148	NR_125912	100874081	Hs.569296	NR_125912	ENSG00000234445	FGF14-AS1	-	FGF14 antisense RNA 1	ncRNA	0.816	0.970	0.731	0.838	0.223	0.147	0.427	0.077	0.077	0.092	0.065	0.137	0.531	0.044	0.097	0.667	0.553	0.143	0.285	0.370	0.501	1.778	0.229	0.305	0.302	0.241	nan	0.407	0.346	0.396	0.210	0.100	0.227	2.597	6.605	0.368	nan	0.229	0.212	0.160	0.196	0.408	0.590	0.427	0.137	0.211	0.238	0.039	0.078
6045	chr4	153197524	153210779	+	0	NA	Intergenic	L1ME4a|LINE|L1	-54656	NR_104273	102191832	Hs.712524	NR_104273	ENSG00000270751	FBXW7-AS1	DEAR|DEspR	FBXW7 antisense RNA 1	pseudo	nan	2.376	0.533	1.114	0.753	0.232	0.301	0.118	0.037	0.498	0.224	1.830	0.774	0.033	0.095	1.141	1.651	7.119	5.214	0.958	0.917	1.166	0.582	1.427	1.626	0.119	0.180	1.236	1.528	0.253	0.185	0.437	1.024	0.145	0.103	0.179	0.215	0.969	0.623	0.050	0.053	0.015	0.098	0.301	1.830		0.092	0.366	0.028
3852	chr18	57277104	57291584	+	0	NA	intron (NM_133459, intron 2 of 10)	MER5B|DNA|hAT-Charlie	80300	NM_133459	147372	Hs.34333	NM_133459	ENSG00000183287	CCBE1	HKLLS1	collagen and calcium binding EGF domains 1	protein-coding	nan	0.666	2.243	0.205	0.380	0.210	0.365	0.562	0.055	0.280	0.189	0.109	0.453	0.023	0.079	0.309	0.226	0.308	0.552	0.579	0.572	0.174	0.117	0.453	0.495	0.076	0.149	0.535	0.710	0.409	0.176	0.088	0.147	3.633	3.808	0.226	0.300	nan	2.071	0.011	0.104	1.077	0.065	0.365	0.109	0.027	0.035	0.041	0.069
6923	chr6	119201893	119236507	+	0	NA	intron (NM_014034, intron 1 of 3)	intron (NM_014034, intron 1 of 3)	3959	NM_014034	25842	Hs.292316	NM_014034	ENSG00000111875	ASF1A	CGI-98|CIA|HSPC146	anti-silencing function 1A histone chaperone	protein-coding	nan	1.491	nan	1.686	0.803	0.435	0.999	0.663	0.126	0.493	0.342	0.979	1.865	0.759	0.140	1.745	1.492	1.273	2.140	2.663	nan	nan	0.501	3.998	4.117	0.955	nan	1.292	2.046	2.694	2.304	0.597	1.383	1.623	2.571	2.161	nan	1.218	0.723	2.222	0.936	0.384	0.761	0.999	0.979	0.405	0.747	0.292	0.789
6556	chr5	174142160	174179854	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	9432	NM_002449	4488	Hs.89404	NM_002449	ENSG00000120149	MSX2	CRS2|FPP|HOX8|MSH|PFM|PFM1	msh homeobox 2	protein-coding	0.573	0.474	0.521	0.040	0.246	0.123	0.495	0.065	0.060	0.021	0.042	0.041	1.510	0.081	0.100	0.146	0.067	3.942	nan	0.671	0.707	0.060	0.037	0.046	0.040	0.165	nan	0.333	0.480	0.243	0.087	0.167	0.299	1.138	1.390	0.151	0.292	0.083	0.143	0.028	0.185	0.270	0.010	0.495	0.041	0.005	0.030	0.034	0.066
4558	chr2	159342798	159368086	+	0	NA	intron (NM_001005476, intron 1 of 20)	intron (NM_001005476, intron 1 of 20)	42050	NM_001304970	8502	Hs.407580	NM_003628	ENSG00000144283	PKP4	p0071	plakophilin 4	protein-coding	nan	0.937	nan	0.195	0.457	0.240	0.249	0.895	0.146	0.087	0.135	0.156	0.471	0.100	0.087	0.916	0.953	3.083	3.769	0.338	0.370	0.550	0.158	0.350	0.362	1.029	1.304	0.365	0.387	0.815	0.608	0.599	0.706	0.206	0.271	0.550	1.492	0.510	0.463	0.277	0.063	0.026	0.097	0.249	0.156	0.110	0.068	0.133	0.321
263	chr1	43145876	43158924	+	0	NA	intron (NM_004559, intron 2 of 7)	MIR|SINE|MIR	3742	NR_132737	4904	Hs.473583	NM_004559	ENSG00000065978	YBX1	BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1	Y-box binding protein 1	protein-coding	19.720	1.530	nan	1.418	1.794	0.850	1.685	1.127	0.161	2.022	1.092	3.081	2.795	1.589	0.162	2.430	2.231	1.969	2.872	4.025	3.794	2.399	0.819	5.374	5.509	2.440	nan	nan	4.010	4.961	5.479	3.657	nan	1.500	1.467	4.009	4.550	2.101	1.107	1.283	1.400	0.279	0.785	1.685	3.081	0.669	0.996	2.167	1.509
7550	chr7	153138826	153160038	+	0	NA	Intergenic	L2b|LINE|L2	-40113	NR_125776	103724390	Hs.614280	NR_125776	ENSG00000234722	LINC01287	TCONS_l2_00027522	long intergenic non-protein coding RNA 1287	ncRNA	0.539	0.803	nan	0.039	1.813	0.878	4.087	0.085	0.068	0.480	0.270	0.214	0.659	0.046	0.133	0.441	0.314	0.494	1.405	1.460	1.249	6.435	2.897	0.068	0.053	0.124	0.232	0.083	0.104	0.270	0.104	0.109	0.160	0.186	0.223	0.122	0.214	1.722	1.156	0.013	0.050	0.022	0.049	4.087	0.214	0.023	0.029	0.047	0.012
3746	chr18	38713043	38733020	+	0	NA	Intergenic	Intergenic	377530	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA	nan	0.807	0.776	0.139	9.808	5.189	2.110	0.097	0.064	0.093	0.113	0.067	0.420	0.039	0.069	0.315	0.237	0.588	1.042	0.630	0.654	6.068	1.889	0.097	0.094	0.364	0.585	nan	0.452	0.375	0.132	0.103	0.259	0.614	0.915	0.294	0.656	1.422	1.253	0.103	0.198	0.072	0.242	2.110	0.067	0.059	0.051	0.074	0.031
7628	chr8	28551332	28573367	+	0	NA	intron (NR_073468, intron 1 of 4)	AluSg|SINE|Alu	3359	NM_001440	2137	Hs.491354	NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding	nan	1.418	nan	2.168	4.482	2.310	1.748	0.525	0.190	2.014	0.946	6.458	1.020	0.639	0.139	1.950	2.103	1.502	1.582	nan	3.649	nan	2.056	0.878	0.839	0.996	1.449	2.131	3.136	2.733	2.545	0.918	1.746	2.103	2.378	1.884	2.853	nan	nan	0.716	0.591	0.488	0.252	1.748	6.458	0.229	2.382	0.529	0.668
5919	chr4	57920671	57949943	+	0	NA	intron (NM_001253835, intron 1 of 3)	intron (NM_001253835, intron 1 of 3)	-40621	NR_034081	255130	Hs.691061	NR_034081	ENSG00000245067	IGFBP7-AS1	-	IGFBP7 antisense RNA 1	ncRNA	nan	0.554	0.499	0.093	0.180	0.095	0.370	1.477	0.215	0.075	0.108	0.062	0.982	0.056	0.085	0.352	0.171	1.116	3.992	0.224	0.257	0.240	0.101	0.325	0.353	3.216	4.419	0.358	0.490	0.350	0.174	0.092	0.177	0.056	0.073	0.147	0.202	0.719	1.035	0.243	0.073	0.026	0.055	0.370	0.062	0.060	0.097	0.041	0.068
4536	chr2	144691536	144716098	+	0	NA	3' UTR (NM_024659, exon 10 of 10)	3' UTR (NM_024659, exon 10 of 10)	9183	NR_110237	101928386	Hs.668251	NR_110237	ENSG00000232377	LOC101928386	-	uncharacterized LOC101928386	ncRNA	1.143	nan	3.381	0.139	0.332	0.143	0.225	1.499	0.112	0.236	0.194	0.199	1.512	0.057	0.083	0.348	0.253	0.346	0.584	0.630	0.555	0.502	0.131	0.280	0.251	5.539	5.672	0.463	0.416	0.683	0.479	0.166	0.381	0.090	0.110	0.566	1.302	0.445	0.282	0.156	0.051	0.031	0.334	0.225	0.199	0.099	0.029	0.064	0.324
3361	chr17	31441858	31472277	+	0	NA	intron (NM_001094, intron 1 of 9)	LTR32|LTR|ERVL	137198	NM_001317225	124912	Hs.434112	NM_173847	ENSG00000141316	SPACA3	ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1	sperm acrosome associated 3	protein-coding	nan	1.045	0.412	0.130	0.748	0.369	0.134	0.069	0.037	0.047	0.070	0.058	2.370	0.074	0.092	0.344	0.191	0.084	0.128	nan	0.234	0.163	0.081	0.141	0.114	0.106	0.238	0.562	0.525	nan	0.136	0.111	0.137	0.061	0.094	0.154	0.255	1.596	1.000	4.576	1.192	0.037	0.060	0.134	0.058	0.009	0.490	0.016	0.028
2985	chr15	90637202	90650818	+	0	NA	promoter-TSS (NM_001289910)	promoter-TSS (NM_001289910)	-157	NM_001289910	3418	Hs.596461	NM_002168	ENSG00000182054	IDH2	D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH	isocitrate dehydrogenase (NADP(+)) 2, mitochondrial	protein-coding	nan	nan	nan	1.565	1.875	0.951	1.398	0.948	0.382	1.971	0.872	2.769	7.923	0.590	0.084	2.292	2.568	2.323	3.262	3.082	2.401	nan	0.761	3.130	3.146	1.387	2.082	5.805	6.230	nan	3.437	2.183	3.219	1.757	1.791	0.906	nan	1.069	0.690	0.998	2.971	0.420	2.152	1.398	2.769	0.675	2.814	1.028	0.282
3593	chr17	77766711	77789995	+	0	NA	Intergenic	CpG-11232	-7438	NM_020649	57332	Hs.387258	NM_020649	ENSG00000141570	CBX8	PC3|RC1	chromobox 8	protein-coding	2.266	2.431	4.390	4.294	3.931	1.938	5.275	0.500	0.151	1.737	0.914	3.832	7.272	2.802	0.135	2.972	3.566	1.683	2.499	4.980	4.394	3.901	1.804	3.036	3.120	nan	2.874	4.207	5.966	3.013	2.163	1.686	2.768	2.414	1.832	1.272	2.219	nan	1.054	3.336	2.676	0.616	0.930	5.275	3.832	1.647	3.867	0.732	0.630
4979	chr20	47024714	47051395	+	0	NA	Intergenic	Intergenic	49400	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA	nan	nan	0.644	0.083	0.196	0.109	0.370	0.484	0.145	0.082	0.079	0.166	0.626	0.056	0.105	0.476	0.325	0.257	0.758	0.666	0.679	nan	0.098	0.111	0.129	3.569	3.932	0.151	0.154	nan	1.075	0.232	0.347	0.086	0.173	0.460	0.905	0.436	0.467	0.326	0.110	0.018	0.152	0.370	0.166	0.526	0.030	0.049	0.557
7781	chr8	90912018	90918003	+	0	NA	5' UTR (NM_001126111, exon 1 of 6)	5' UTR (NM_001126111, exon 1 of 6)	248	NM_001126111	734	Hs.436445	NM_004337	ENSG00000164823	OSGIN2	C8orf1|hT41	oxidative stress induced growth inhibitor family member 2	protein-coding	nan	2.348	2.607	3.665	2.577	1.258	2.140	3.323	0.218	0.628	0.275	2.639	6.865	1.865	0.075	2.424	2.651	3.436	nan	4.469	3.115	4.057	1.298	5.872	5.873	1.676	2.372	12.789	15.161	1.846	1.956	1.608	3.823	3.056	2.669	1.640	2.015	1.558	1.022	2.669	2.274	0.603	1.950	2.140	2.639	0.391	2.642	1.159	0.623
3210	chr16	87414693	87427141	+	0	NA	intron (NM_001282683, intron 2 of 9)	intron (NM_001282683, intron 2 of 9)	-3518	NM_024735	79791	Hs.567582	NM_024735	ENSG00000103264	FBXO31	FBX14|FBXO14|Fbx31|MRT45|pp2386	F-box protein 31	protein-coding	nan	2.298	3.528	4.792	3.853	1.884	4.106	2.091	0.301	1.295	0.535	4.361	4.818	2.149	0.137	2.950	3.316	2.134	3.639	3.311	3.125	4.904	2.980	6.605	6.411	2.192	2.908	3.431	5.608	6.058	5.361	1.639	2.433	1.920	2.675	2.906	5.233	2.539	1.547	1.395	2.921	0.274	1.950	4.106	4.361	1.551	2.958	1.002	1.576
7260	chr7	39758538	39762621	+	0	NA	Intergenic	Intergenic	-12588	NR_026999	349114	Hs.414183	NM_198284		LINC00265	NCRNA00265	long intergenic non-protein coding RNA 265	ncRNA	1.840	2.700	3.443	2.814	0.191	0.148	0.426	0.098	0.158	0.137	0.202	4.404	9.648	0.052	0.192	0.632	0.492	0.937	2.598	1.701	nan	0.338	0.149	2.043	1.758	0.352	nan	nan	20.464	0.376	0.209	0.590	1.218	0.275	0.247	3.013	nan	0.584	0.572	3.034		0.047	0.309	0.426	4.404	0.023	0.149	0.462	3.062
1409	chr11	46430840	46490660	+	0	NA	intron (NM_001300731, intron 11 of 16)	AluJr4|SINE|Alu	-12607	NR_036118	100422825		NR_036118	ENSG00000283497	MIR3160-2	mir-3160-2	microRNA 3160-2	ncRNA	nan	1.120	1.090	0.961	1.554	0.812	0.529	0.205	0.126	0.393	0.308	0.540	1.082	0.095	0.139	0.611	0.783	0.335	0.414	1.942	2.143	1.597	0.467	0.393	0.416	0.753	1.127	0.364	0.442	0.677	0.517	0.314	0.481	1.084	1.196	0.971	nan	1.513	0.824	0.900	0.206	0.313	0.370	0.529	0.540	0.094	0.138	0.079	1.126
5895	chr4	52900465	52906287	+	0	NA	intron (NM_000232, intron 1 of 5)	intron (NM_000232, intron 1 of 5)	1109	NM_000232	6443	Hs.438953	NM_000232	ENSG00000163069	SGCB	A3b|LGMD2E|SGC	sarcoglycan beta	protein-coding	nan	1.182	1.292	1.415	1.695	0.608	2.100	1.256	0.111	0.188	0.143	2.819	3.643	1.030	0.074	1.486	1.273	1.920	2.115	4.422	3.919	4.594	1.788	2.353	2.377	2.266	2.891	1.974	3.046	2.784	3.046	1.272	1.887	1.319	0.889	0.629	0.836	8.047	4.853	1.200	1.387	0.357	1.361	2.100	2.819	0.267	1.675	0.479	0.367
4417	chr2	85640776	85678071	+	0	NA	intron (NM_201594, intron 12 of 20)	AluSx|SINE|Alu	13369	NM_201594	284948	Hs.209542	NM_198482	ENSG00000152292	SH2D6	-	SH2 domain containing 6	protein-coding	nan	1.347	nan	1.719	2.309	0.987	1.936	1.275	0.293	0.922	0.331	1.254	3.001	0.830	0.113	2.768	3.969	2.159	2.492	2.296	2.046	3.227	1.220	3.631	3.797	1.699	2.449	3.479	3.560	2.600	2.882	2.654	4.163	1.209	1.308	1.763	5.114	2.782	1.568	3.713	0.806	0.397	0.549	1.936	1.254	1.198	2.579	3.303	1.305
1716	chr11	125931275	125963083	+	0	NA	Intergenic	AluSx|SINE|Alu	-13992	NM_001243597	50937	Hs.38034	NM_016952	ENSG00000064309	CDON	CDO|CDON1|HPE11|ORCAM	cell adhesion associated, oncogene regulated	protein-coding	1.150	1.096	0.911	1.333	1.812	0.887	0.678	0.276	0.096	1.443	0.718	1.994	2.120	0.290	0.126	1.023	1.316	1.168	2.395	1.253	1.487	2.604	2.215	1.120	1.101	0.720	0.980	3.142	3.948	0.849	0.752	1.421	1.886	0.497	0.462	0.584	nan	1.936	1.083	2.628	0.455	0.081	0.434	0.678	1.994	0.116	0.587	0.478	0.253
7688	chr8	59716345	59725236	+	0	NA	exon (NM_014729, exon 8 of 9)	exon (NM_014729, exon 8 of 9)	-148386	NM_003580	8439	Hs.372000	NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding	2.073	nan	2.852	1.302	1.841	1.136	1.571	0.234	0.037	0.811	0.441	6.100	2.333	0.305	0.157	0.390	0.526	0.258	0.611	9.776	11.186	2.120	0.839	0.052	0.093	2.332	nan	2.211	2.176	1.178	0.843	0.099	0.178	2.569	3.530	0.191	0.263	4.593	1.713	1.967	1.758	0.694	1.793	1.571	6.100	0.099	1.120	0.023	0.029
1663	chr11	115449910	115463293	+	0	NA	Intergenic	Intergenic	-81360	NM_001301043	23705	Hs.370510	NM_014333	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding	0.832	0.800	0.694	0.677	1.535	0.742	0.374	0.045	0.061	0.400	0.249	0.886	1.328	0.040	0.115	0.771	nan	0.329	0.668	4.703	4.486	5.573	1.832	0.074	0.142	0.838	nan	2.127	2.431	0.623	0.387	0.644	1.258	2.065	1.408	0.301	1.185	0.781	0.593	4.416	0.418	0.284	0.322	0.374	0.886	0.716	0.061	0.599	0.130
5716	chr3	180457137	180470226	+	0	NA	intron (NR_109986, intron 7 of 13)	intron (NR_109986, intron 7 of 13)	-66398	NM_181426	339829	Hs.712820	NM_181426	ENSG00000145075	CCDC39	CILD14|FAP59	coiled-coil domain containing 39	protein-coding	1.252	1.511	0.955	1.270	0.880	0.503	1.526	0.149	0.158	0.600	0.582	4.729	11.187	0.066	0.071	0.314	0.185	0.364	0.433	12.547	12.747	10.950	5.667	0.182	0.193	0.254	0.348	0.946	1.013	0.763	0.386	0.091	0.191	7.858	7.201	0.912	2.388	3.926	1.925	0.064	1.956	2.876	0.129	1.526	4.729	0.007	0.031	0.053	0.219
635	chr1	164556568	164621968	+	0	NA	intron (NM_001204963, intron 2 of 8)	AluJb|SINE|Alu	60671	NM_002585	5087	Hs.557097	NM_002585	ENSG00000185630	PBX1	-	PBX homeobox 1	protein-coding	1.499	nan	1.892	0.871	1.422	0.637	3.409	1.262	0.259	0.385	0.261	1.484	1.579	0.043	0.107	0.930	1.229	2.167	6.311	1.321	nan	1.890	1.318	0.531	0.545	3.336	3.966	1.632	nan	0.392	0.237	1.485	2.041	1.328	1.114	0.431	0.808	0.989	0.800	0.902	1.946	0.336	1.818	3.409	1.484	0.129	0.121	1.248	0.237
1088	chr10	29765282	29772681	+	0	NA	intron (NM_003174, intron 27 of 35)	intron (NM_003174, intron 27 of 35)	65045	NR_030335	693189		NR_030335	ENSG00000207612	MIR604	MIRN604|hsa-mir-604	microRNA 604	ncRNA	0.742	1.791	0.862	0.853	0.924	0.497	0.191	0.348	0.153	0.825	0.390	1.667	1.558	0.040	0.089	0.315	0.460	0.295	0.586	3.264	2.873	9.778	2.849	0.348	0.314	0.386	0.449	3.578	3.302	0.148	0.117	0.117	0.230	1.196	1.052	0.342	0.437	3.055	1.641	1.701	0.856	0.130	0.161	0.191	1.667	0.013	0.345	0.055	0.066
5373	chr3	52310839	52322960	+	0	NA	Intergenic	AluSz|SINE|Alu	-4240	NM_025222	80335	Hs.194110	NM_025222	ENSG00000164091	WDR82	MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A	WD repeat domain 82	protein-coding	3.464	3.499	nan	1.922	1.769	1.085	1.425	2.033	0.690	1.178	0.570	2.732	6.223	2.387	0.131	2.450	2.386	4.620	7.124	4.508	4.154	5.424	2.771	4.974	5.278	2.125	2.986	3.757	5.817	nan	4.459	2.552	3.467	3.408	4.246	2.918	2.928	2.326	1.186	2.576	1.555	0.662	1.386	1.425	2.732	0.563	2.168	1.098	1.008
979	chr1	247486992	247502205	+	0	NA	intron (NM_001329733, intron 2 of 9)	CpG	644	NM_001329733	84838	Hs.168677	NM_032752	ENSG00000162714	ZNF496	NIZP1|ZFP496|ZKSCAN17|ZSCAN49	zinc finger protein 496	protein-coding	nan	1.997	nan	5.730	2.358	1.349	2.223	0.852	0.115	2.920	0.961	2.399	2.235	0.928	0.097	2.717	3.056	3.186	4.579	4.012	3.859	7.213	2.497	4.555	4.747	1.226	2.010	3.196	4.200	2.088	2.336	0.666	1.219	2.079	1.840	2.616	2.521	2.759	1.541	0.877	0.938	0.407	0.918	2.223	2.399	0.427	1.605	0.202	1.311
3950	chr19	5838750	5852224	+	0	NA	intron (NM_001097641, intron 1 of 1)	AluSx|SINE|Alu	-1991	NR_110740	101928844	Hs.434577	NR_110740	ENSG00000267709	LOC101928844	-	uncharacterized LOC101928844	ncRNA	1.649	1.218	1.622	0.365	0.307	0.143	0.218	0.089	0.154	0.185	0.142	0.119	1.338	0.017	0.079	0.305	0.442	0.372	0.697	0.609	0.610	0.513	0.175	0.394	0.445	0.715	1.141	0.927	nan	2.043	2.142	0.264	0.283	3.382	3.978	0.700	2.050	1.174	0.698	0.665	0.039	1.319	0.058	0.218	0.119	0.741	0.287	0.017	0.736
709	chr1	183038521	183042111	+	0	NA	intron (NM_002293, intron 1 of 27)	(TG)n|Simple_repeat|Simple_repeat	47721	NM_002293	3915	Hs.609663	NM_002293	ENSG00000135862	LAMC1	LAMB2	laminin subunit gamma 1	protein-coding	nan	nan	1.251	0.171	0.676	0.222	0.714	1.195	0.034	0.215	0.186	0.039	0.782	0.031	0.086	4.315	4.536	12.522	18.907	0.703	nan	1.345	0.326	nan	0.670	0.827	1.410	1.318	0.915	0.803	0.748	0.790	1.655	0.881	1.915	0.514	nan	0.665	0.574	0.062	0.149	0.076	0.194	0.714	0.039	0.135	0.243	0.055	0.208
3603	chr17	78489653	78527574	+	0	NA	Intergenic	AluSq|SINE|Alu	-10012	NM_020761	57521	Hs.133044	NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding	1.713	1.320	1.590	0.639	0.607	0.322	0.521	0.235	0.171	0.305	0.243	0.615	1.005	0.326	0.144	0.987	0.849	0.632	0.874	1.051	1.078	1.744	0.675	0.866	0.940	nan	1.354	1.531	2.169	1.651	1.218	0.729	1.036	0.404	0.602	2.345	5.619	nan	0.688	0.122	0.434	0.075	0.688	0.521	0.615	0.363	0.735	0.094	2.992
310	chr1	54035730	54040224	+	0	NA	intron (NM_147193, intron 3 of 9)	MIRb|SINE|MIR	112905	NM_033067	63948	Hs.131654	NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding	1.276	1.003	1.920	0.272	0.336	0.178	1.590	0.376	0.071	0.081	0.130	0.134	2.817	0.049	0.134	0.831	1.360	10.801	12.692	1.208	1.124	0.781	0.341	0.879	0.774	3.659	3.678	1.812	2.187	1.446	1.229	1.115	2.109	0.381	0.177	0.374	nan	0.385	0.454	0.719	0.546	0.086	0.158	1.590	0.134	0.808	0.127	1.517	0.136
192	chr1	33181306	33209482	+	0	NA	Intergenic	AluJb|SINE|Alu	-12118	NM_020888	57648	Hs.591502	NM_020888	ENSG00000162522	KIAA1522	-	KIAA1522	protein-coding	1.953	nan	1.983	1.418	0.610	0.347	0.336	0.300	0.199	0.388	0.259	1.432	1.049	0.629	0.126	2.533	3.190	1.568	1.297	1.399	1.495	nan	0.429	1.937	2.000	0.617	1.056	1.401	1.914	nan	0.461	1.015	1.543	0.357	0.572	0.545	1.002	0.717	nan	0.716	0.477	0.047	0.280	0.336	1.432	0.375	0.573	0.556	0.211
4320	chr2	46071624	46088346	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	200942	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding	1.124	nan	0.795	0.510	1.973	1.096	0.345	0.634	0.085	0.272	0.228	0.344	1.016	0.052	0.135	0.460	0.333	0.298	0.559	nan	0.718	5.031	2.736	0.452	0.476	0.843	1.357	1.009	1.191	0.817	0.602	0.237	0.391	0.544	0.438	0.229	nan	nan	0.866	1.181	0.725	0.130	0.299	0.345	0.344	0.314	0.128	0.095	0.289
4262	chr2	25531754	25538348	+	0	NA	intron (NM_022552, intron 2 of 22)	intron (NM_022552, intron 2 of 22)	16539	NR_031570	100302246		NR_031570	ENSG00000221445	MIR1301	MIRN1301|hsa-mir-1301|mir-1301	microRNA 1301	ncRNA	2.862	1.600	3.662	3.088	2.295	1.044	1.774	0.132	0.048	4.348	1.756	1.461	7.733	0.265	0.073	2.224	4.620	0.693	0.887	5.847	5.307	5.579	1.374	3.718	3.988	1.898	2.677	8.705	nan	1.702	2.004	1.042	1.565	2.065	1.955	2.069	6.863	2.949	1.567	4.092	2.412	0.917	0.798	1.774	1.461	1.497	2.470	1.124	2.632
3764	chr18	42303982	42314218	+	0	NA	intron (NM_001130110, intron 2 of 3)	MIR|SINE|MIR	48237	NM_015559	26040	Hs.435458	NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding	nan	0.855	0.878	0.406	0.334	0.125	1.723	0.717	0.125	0.199	0.136	0.416	0.469	0.042	0.112	4.653	5.484	7.356	7.153	0.699	0.881	0.621	0.253	0.060	0.054	0.611	0.992	0.578	0.556	0.558	0.380	2.013	3.658	0.327	0.411	0.295	nan	1.909	1.575	0.202	0.080	0.112	0.605	1.723	0.416	0.218	0.218	2.512	0.232
1707	chr11	122008768	122031402	+	0	NA	intron (NR_137184, intron 1 of 1)	intron (NR_137184, intron 1 of 1)	-2784	NR_029477	406882		NR_029477	ENSG00000198975	MIRLET7A2	LET7A2|MIRNLET7A2|let-7a-2	microRNA let-7a-2	ncRNA	1.005	0.705	0.911	0.089	0.160	0.078	0.328	1.641	0.254	0.454	0.874	0.027	4.125	0.304	0.134	0.357	0.173	0.220	0.397	1.295	1.363	0.152	0.093	0.237	0.219	0.152	0.302	0.169	0.183	0.397	0.202	0.266	0.401	0.634	0.586	0.085	nan	0.677	0.546	1.545	4.290	0.055	0.007	0.328	0.027		0.054	0.053	0.088
7753	chr8	74204597	74209422	+	0	NA	5' UTR (NM_172037, exon 1 of 6)	5' UTR (NM_172037, exon 1 of 6)	172	NM_172037	157506	Hs.244940	NM_172037	ENSG00000121039	RDH10	SDR16C4	retinol dehydrogenase 10	protein-coding	7.693	3.814	7.441	5.205	7.523	3.941	3.553	3.914	0.266	1.812	1.232	7.491	10.965	6.657	0.191	4.815	5.565	7.827	11.906	9.575	8.321	9.544	5.104	15.702	15.495	3.659	5.684	6.179	9.010	7.839	8.791	5.527	9.847	7.306	7.588	7.149	6.964	6.059	3.025	2.284	4.303	1.475	3.653	3.553	7.491	0.585	5.693	2.124	1.967
3103	chr16	29826669	29838631	+	0	NA	3' UTR (NM_024516, exon 3 of 3)	3' UTR (NM_024516, exon 3 of 3)	935	NM_005115	9961	Hs.632177	NM_005115	ENSG00000013364	MVP	LRP|VAULT1	major vault protein	protein-coding	3.744	1.767	nan	2.361	2.653	1.369	1.835	1.124	0.269	0.641	0.466	2.125	6.703	1.582	0.110	1.771	2.210	1.419	2.126	3.054	2.561	nan	2.368	3.234	3.596	4.191	5.119	5.083	6.620	7.029	6.190	1.540	2.233	3.660	5.388	3.792	7.257	1.857	0.840	2.681	1.535	1.413	1.579	1.835	2.125	1.793	1.917	0.986	2.646
2044	chr12	80379494	80391704	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-56364	NM_001244990	4659	Hs.49582	NM_002480	ENSG00000058272	PPP1R12A	M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding	0.757	0.856	0.644	0.118	0.338	0.157	0.105	0.384	0.224	0.090	0.089	0.128	0.215	0.045	0.075	0.450	0.286	7.013	1.519	0.361	0.470	0.346	0.104	0.200	0.222	0.242	0.426	0.308	0.368	0.500	0.204	0.130	0.218	0.538	0.619	0.254	0.419	0.446	0.667	0.046	0.101	0.140	0.021	0.105	0.128	0.064	0.008	0.025	0.141
8038	chr9	8071077	8098692	+	0	NA	Intergenic	L1PA6|LINE|L1	-285078	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding	0.671	2.304	0.731	0.192	0.283	0.186	1.366	0.082	0.122	0.267	0.197	0.834	0.402	0.016	0.071	0.240	0.129	0.482	1.156	1.403	1.259	2.537	0.837	0.105	0.106	0.854	1.208	0.526	0.695	0.537	0.424	0.190	0.300	1.144	1.195	0.219	nan	1.020	0.760	3.388	0.620	0.258	0.179	1.366	0.834	0.035	0.261	0.224	0.058
4553	chr2	155915702	155933373	+	0	NA	Intergenic	L1PB3|LINE|L1	369444	NM_001260509	3760	Hs.591606	NM_002239	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	potassium voltage-gated channel subfamily J member 3	protein-coding	nan	0.667	nan	0.159	0.258	0.156	0.116	0.072	0.073	0.089	0.147	0.155	0.227	0.018	0.068	0.319	0.211	0.171	0.263	0.135	0.168	0.254	0.082	0.240	0.255	4.432	5.229	0.303	0.267	0.994	0.781	0.161	0.237	0.221	0.238	0.300	0.743	0.276	0.341	0.057	0.050	0.060	0.217	0.116	0.155	0.352	0.035	0.034	0.099
4231	chr2	16197038	16214832	+	0	NA	intron (NR_126559, intron 1 of 3)	AluSx3|SINE|Alu	15386	NR_126559	104797537	Hs.435748	NR_126559	ENSG00000236289	GACAT3	LINC01458|lncRNA-AC130710	gastric cancer associated transcript 3 (non-protein coding)	ncRNA	0.770	0.410	2.843	0.393	0.217	0.095	0.123	0.047	0.036	0.062	0.116	0.040	0.371	0.059	0.116	0.318	0.308	0.229	0.399	0.284	0.290	1.231	0.394	0.223	0.143	0.142	0.239	0.539	nan	0.500	0.302	6.739	9.501	0.060	0.042	0.691	nan	0.151	0.212	0.985	1.311	0.037	0.018	0.123	0.040		0.223	2.572	0.190
1437	chr11	61294813	61312178	+	0	NA	intron (NM_004200, intron 3 of 8)	intron (NM_004200, intron 3 of 8)	27223	NM_001145077	390205	Hs.441122	NM_001145077	ENSG00000204950	LRRC10B	-	leucine rich repeat containing 10B	protein-coding	nan	1.588	1.235	0.955	0.662	0.388	0.251	0.098	0.038	0.610	0.315	0.366	1.572	0.100	0.079	0.842	1.160	0.168	0.219	1.571	1.825	1.760	0.539	0.240	0.323	0.629	0.966	10.639	10.655	0.666	0.514	0.685	0.752	0.870	0.731	0.488	1.046	2.451	1.269	2.893	2.566	0.312	0.068	0.251	0.366	0.245	3.544	0.342	0.227
6189	chr5	14815729	14825662	+	0	NA	intron (NM_054027, intron 1 of 11)	MER31B|LTR|ERV1	5426	NR_039780	100616271		NR_039780	ENSG00000264792	MIR4637	-	microRNA 4637	ncRNA	nan	nan	nan	0.382	0.288	0.097	0.201	0.219	0.260	0.310	0.326	0.048	nan	0.022	0.162	0.481	0.383	0.334	0.564	0.505	0.737	0.461	0.198	0.228	0.201	nan	5.906	0.755	0.823	2.868	2.270	0.196	0.311	0.224	0.224	0.360	nan	1.511	1.025	0.005	0.259	0.019	0.057	0.201	0.048	0.285	0.184	0.064	0.188
2517	chr14	29734955	29751965	+	0	NA	Intergenic	Intergenic	-488467	NR_135255	105370424	Hs.375809	NR_135255	ENSG00000257056	LOC105370424	-	uncharacterized LOC105370424	ncRNA	1.520	0.805	0.708	0.216	0.274	0.175	0.226	0.486	0.142	0.140	0.178	0.472	0.326	0.045	0.118	0.197	0.174	0.191	0.180	1.687	1.967	2.055	0.831	0.132	0.148	8.244	9.878	0.320	0.358	1.397	1.338	0.070	0.108	0.909	0.812	0.443	1.109	0.418	0.411	0.066	2.025	0.499	0.545	0.226	0.472	0.543	0.188	0.036	0.131
7547	chr7	152619893	152635383	+	0	NA	Intergenic	L1MA4A|LINE|L1	170804	NR_073000	57180	Hs.647117	NM_020445	ENSG00000133627	ACTR3B	ARP11|ARP3BETA	ARP3 actin related protein 3 homolog B	protein-coding	0.555	0.768	nan	0.697	4.555	2.297	1.106	0.074	0.146	0.242	0.248	1.501	1.994	0.099	0.123	1.066	1.379	0.476	0.458	1.382	1.341	0.320	0.101	0.084	0.064	0.118	0.200	0.072	0.104	0.438	0.474	1.484	1.677	1.632	2.313	0.161	0.179	0.794	0.661	0.205	0.319	0.461	0.097	1.106	1.501	0.012	0.026	1.022	0.047
6108	chr4	187571265	187583373	+	0	NA	intron (NM_005245, intron 3 of 26)	MER74A|LTR|ERVL	67668	NM_005245	2195	Hs.481371	NM_005245	ENSG00000083857	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding	nan	0.704	nan	0.635	0.172	0.067	0.717	0.069	0.092	0.246	0.172	3.429	0.720	0.077	0.067	0.524	0.705	1.922	2.341	0.464	0.467	0.061	0.024	0.231	0.163	0.102	0.104	0.948	1.018	0.315	0.153	0.157	0.196	0.554	0.671	0.056	0.104	0.151	0.210		0.030	0.008	0.190	0.717	3.429	0.033	1.197	0.039	0.011
1740	chr11	130963135	130968436	+	0	NA	Intergenic	Intergenic	-179403	NM_001347925	399979	Hs.444024	NM_014758	ENSG00000120451	SNX19	CHET8	sorting nexin 19	protein-coding	0.380	nan	0.429	0.016	0.300	0.179	0.214	0.049	0.090	0.119	0.128	0.046	nan		0.098	3.242	3.785	0.239	0.204	0.194	0.191	0.127	0.035	0.086	0.135	0.194	0.217	0.207	0.137	0.352	0.186	10.125	16.404	0.071	0.126	0.140	0.404	0.334	0.430	1.026	0.034	0.017		0.214	0.046	0.037	0.019	13.293	0.095
1600	chr11	100689112	100707591	+	0	NA	intron (NM_152432, intron 3 of 23)	LTR78|LTR|ERV1	-139665	NR_133571	100128386	Hs.635125	NR_133571	ENSG00000248027	LOC100128386	-	uncharacterized LOC100128386	ncRNA	0.944	1.018	0.821	0.048	0.402	0.193	0.276	0.945	0.017	0.068	0.144	0.045	0.747	0.041	0.105	0.767	0.553	0.434	0.738	0.446	0.479	0.147	0.095	0.512	0.551	3.219	4.108	0.177	0.160	0.532	0.249	0.245	0.310	0.444	0.380	0.331	0.966	2.214	1.150	0.015	0.132	0.036	0.254	0.276	0.045	0.331	0.307	0.096	0.224
603	chr1	159141322	159159133	+	0	NA	intron (NM_001346510, intron 1 of 8)	intron (NM_001346510, intron 1 of 8)	8678	NM_001346510	57863	Hs.365689	NM_021189	ENSG00000162706	CADM3	BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3	cell adhesion molecule 3	protein-coding	nan	nan	1.318	0.039	0.189	0.144	0.079	0.097	0.090	0.124	0.186	0.054	0.521	0.062	0.091	0.571	0.610	0.366	0.454	0.297	nan	0.166	0.095	0.054	0.068	4.012	4.653	0.717	0.951	2.105	2.026	0.790	1.153	0.089	0.090	0.685	1.439	0.669	0.589	0.216	0.119	0.026	0.045	0.079	0.054	0.148	0.029	0.390	0.217
8250	chr9	116860973	116891724	+	0	NA	Intergenic	(CTA)n|Simple_repeat|Simple_repeat	-15011	NM_138424	113220	Hs.28149	NM_138424	ENSG00000136883	KIF12	-	kinesin family member 12	protein-coding	0.893	0.587	nan	0.088	0.170	0.104	0.088	0.093	0.070	0.066	0.127	0.107	0.792	0.040	0.102	0.491	0.660	0.293	0.416	0.427	0.516	0.108	0.039	1.136	1.171	0.091	0.185	0.707	nan	1.797	1.806	0.609	0.921	0.095	0.090	1.210	3.198	nan	0.411	0.162	0.029	0.022	0.051	0.088	0.107	0.401	0.036	0.502	1.405
8009	chr8	146244836	146256223	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-22244	NR_023392	286101	Hs.367856	NR_023392		ZNF252P	ZNF252	zinc finger protein 252, pseudogene	pseudo	1.073	1.485	nan	1.094	2.863	1.239	0.369	0.118	0.099	1.129	0.414	2.563	1.138	0.079	0.112	0.259	0.284	0.323	0.610	nan	4.546	nan	0.386	0.671	0.631	0.218	0.441	0.550	0.722	0.641	0.496	0.575	0.526	0.375	0.452	0.361	0.566	3.246	1.352	0.195	1.174	0.050	0.133	0.369	2.563	0.060	0.375	0.111	0.205
5666	chr3	172553014	172589940	+	0	NA	Intergenic	Intergenic	103002	NM_001258315	1894	Hs.518299	NM_018098	ENSG00000114346	ECT2	ARHGEF31	epithelial cell transforming 2	protein-coding	0.963	1.404	0.748	0.182	0.620	0.318	0.551	0.162	0.096	0.128	0.168	0.296	0.261	0.041	0.078	0.352	0.247	0.750	1.103	0.497	0.455	6.757	1.738	0.218	0.239	0.594	0.805	0.320	0.285	0.695	0.254	0.136	0.190	0.506	0.651	0.282	0.542	0.947	0.800	0.160	0.082	0.088	0.055	0.551	0.296	0.190	0.049	0.035	0.178
90	chr1	14567695	14571908	+	0	NA	Intergenic	Intergenic	-355412	NM_015209	23254	Hs.368823	NM_015209	ENSG00000189337	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding	0.467	0.712	nan	0.150	0.569	0.189	0.062	0.033	0.227	0.110	0.020	0.142	0.272	0.052	0.093	6.609	8.553	10.466	8.078	0.403	0.495	0.481	0.112	4.907	nan	0.108	nan	0.981	0.822	nan	0.250	6.724	5.926	0.049	0.037	0.273	0.393	0.665	0.553	0.039	0.043			0.062	0.142	0.063	0.049	3.594	0.030
4712	chr2	217479365	217502834	+	0	NA	Intergenic	Intergenic	-6452	NM_001313992	3485	Hs.438102	NM_000597	ENSG00000115457	IGFBP2	IBP2|IGF-BP53	insulin like growth factor binding protein 2	protein-coding	nan	1.788	nan	0.918	6.725	3.468	1.251	0.574	0.160	2.173	1.040	2.825	1.828	0.295	0.133	0.513	0.690	1.538	1.668	2.918	2.702	2.986	1.035	0.253	0.256	0.545	0.973	3.235	nan	1.716	2.428	0.350	0.790	2.461	2.184	2.470	5.595	1.070	0.618	1.384	0.198	1.024	3.065	1.251	2.825	0.482	1.918	0.336	2.855
3514	chr17	69155470	69179810	+	0	NA	intron (NR_104152, intron 2 of 3)	intron (NR_104152, intron 2 of 3)	30680	NR_104152	101928165	Hs.407613	NR_104152	ENSG00000260785	CASC17	LINC00600	cancer susceptibility candidate 17 (non-protein coding)	ncRNA	1.116	nan	0.557	0.418	2.688	1.356	0.347	0.309	0.146	1.130	0.781	3.653	2.607	0.040	0.138	0.637	0.482	0.945	1.485	1.057	1.565	3.706	2.913	0.241	0.203	1.295	nan	0.554	0.696	0.449	0.217	0.682	1.369	1.928	2.588	0.134	0.189	2.276	0.965	0.408	2.140	0.430	0.093	0.347	3.653	0.103	0.138	1.834	0.031
565	chr1	154966174	154996160	+	0	NA	intron (NR_049765, intron 2 of 3)	intron (NR_049765, intron 2 of 3)	6061	NM_001252406	51043	Hs.729279	NM_001252406	ENSG00000160685	ZBTB7B	CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX	zinc finger and BTB domain containing 7B	protein-coding	nan	nan	4.032	2.431	2.498	1.320	3.519	2.312	0.350	1.620	0.685	1.972	6.750	2.584	0.122	3.152	3.853	2.178	3.108	2.972	nan	2.563	0.816	3.477	3.702	1.919	2.606	4.204	4.894	2.409	1.989	3.468	5.397	1.968	1.947	2.363	4.751	1.312	0.704	1.603	3.410	0.610	1.587	3.519	1.972	1.143	2.472	2.856	1.667
3247	chr17	4691835	4695499	+	0	NA	3' UTR (NM_001014985, exon 4 of 4)	3' UTR (NM_001014985, exon 4 of 4)	1413	NM_001014985	388323	Hs.131035	NM_001014985	ENSG00000182327	GLTPD2	-	glycolipid transfer protein domain containing 2	protein-coding	4.138	2.297	2.330	1.741	2.899	0.960	2.754	0.483	0.133	1.197	0.768	3.514	4.078	3.959	0.156	3.631	4.816	3.239	4.733	4.852	3.867	5.766	2.006	0.960	1.352	3.194	3.989	7.976	10.489	2.053	2.200	1.261	1.473	1.491	0.962	1.607	2.503	1.836	1.228	2.251	2.284	0.156	0.455	2.754	3.514	1.563	6.977	0.889	0.579
850	chr1	212203744	212211132	+	0	NA	intron (NR_037667, intron 1 of 20)	AluSx1|SINE|Alu	-1457	NM_016448	51514	Hs.656473	NM_016448	ENSG00000143476	DTL	CDT2|DCAF2|L2DTL|RAMP	denticleless E3 ubiquitin protein ligase homolog	protein-coding	4.114	3.370	3.683	2.391	3.720	2.285	2.496	2.433	0.416	2.014	1.051	2.456	nan	2.227	0.107	3.968	3.458	6.365	9.276	6.543	5.288	nan	2.920	9.339	9.654	4.046	nan	3.970	7.085	4.208	3.951	1.662	2.324	5.000	7.369	8.024	6.447	2.542	1.452	1.804	1.137	0.895	1.311	2.496	2.456	0.687	1.630	0.620	1.267
4997	chr20	50137181	50160203	+	0	NA	intron (NM_001258292, intron 1 of 9)	MIR|SINE|MIR	10566	NM_001258297	4773	Hs.744148	NM_012340	ENSG00000101096	NFATC2	NFAT1|NFATP	nuclear factor of activated T-cells 2	protein-coding	0.823	1.184	0.544	0.139	1.532	0.778	0.251	0.254	0.105	2.937	1.466	2.622	1.902	0.192	0.092	0.638	nan	0.327	0.627	2.116	2.613	1.229	0.490	0.534	0.619	0.294	0.442	0.636	0.890	0.432	0.262	0.828	1.221	0.435	0.241	0.207	0.332	3.240	1.647	0.785	1.156	0.058	0.024	0.251	2.622	0.068	0.532	0.704	0.016
4683	chr2	207707460	207729295	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-70345	NR_036077	100422993		NR_036077	ENSG00000283469	MIR3130-1	MIR3130-3|mir-3130-1	microRNA 3130-1	ncRNA	1.054	nan	0.816	0.077	0.352	0.222	0.088	0.086	0.052	0.101	0.114	0.116	0.326	0.040	0.081	0.255	0.202	0.205	0.225	0.191	0.228	0.171	0.045	0.352	0.297	4.970	5.177	0.255	0.328	0.406	0.226	0.123	0.171	0.073	0.053	0.313	0.650	0.435	0.417	0.059	0.082	0.024	0.059	0.088	0.116	0.021	0.051	0.018	0.246
7986	chr8	143520312	143541624	+	0	NA	Intergenic	Intergenic	-14409	NM_001702	575	Hs.194654	NM_001702	ENSG00000181790	ADGRB1	BAI1|GDAIF	adhesion G protein-coupled receptor B1	protein-coding	1.064	0.619	nan	0.141	0.478	0.257	0.760	0.060	0.052	0.066	0.075	1.739	1.918	0.346	0.049	1.032	1.575	0.139	0.185	nan	3.019	nan	0.158	0.254	0.297	0.671	1.077	0.445	0.824	0.855	0.886	0.648	0.742	0.188	0.206	0.244	0.287	0.569	0.367	1.754	0.437	0.013	0.107	0.760	1.739	0.264	0.241	0.241	0.040
4777	chr2	237876804	237887479	+	0	NA	Intergenic	Intergenic	82669	NR_135202	93463	Hs.652810	NR_135202	ENSG00000124835	LOC93463	-	uncharacterized LOC93463	ncRNA	0.961	nan	1.417	1.301	1.743	0.886	0.687	0.064	0.030	0.058	0.047	0.582	4.679	0.030	0.107	4.486	6.487	0.228	0.251	3.755	3.239	0.163	0.108	0.584	0.646	0.597	0.900	0.811	nan	0.480	0.426	0.940	1.671	0.594	0.533	0.221	0.280	0.776	0.450	6.414	0.815	0.170	0.944	0.687	0.582	0.211	0.091	1.836	0.023
11	chr1	1180610	1210576	+	0	NA	intron (NM_194457, intron 2 of 5)	intron (NM_194457, intron 2 of 5)	-13491	NM_001014980	388581	Hs.197613	NM_001014980	ENSG00000184163	FAM132A	C1QDC2|C1QTNF12|CTRP12	family with sequence similarity 132 member A	protein-coding	1.278	nan	1.743	1.614	0.700	0.379	0.403	0.460	0.193	0.382	0.280	0.408	1.551	0.659	0.117	0.868	1.143	0.876	1.468	2.400	2.515	0.948	0.292	3.065	2.992	0.935	nan	nan	6.867	nan	0.767	0.761	1.148	0.299	0.424	0.839	1.107	0.713	0.513	0.436	0.749	0.067	0.783	0.403	0.408	0.313	0.403	0.235	0.297
4117	chr19	48298577	48306282	+	0	NA	Intergenic	Intergenic	4432	NM_198479	284355	Hs.629812	NM_198479	ENSG00000178928	TPRX1	TPRX	tetrapeptide repeat homeobox 1	protein-coding	1.091	0.771	1.144	0.113	0.344	0.265	0.100	0.078	0.126	0.142	0.031	0.062	0.218	0.107	0.146	0.229	0.160	0.222	0.308	0.334	0.460	0.355	0.165	0.274	0.229	0.242	0.459	0.212	0.229	0.881	0.456	0.215	0.203	0.114	0.052	2.809	10.668	0.367	0.482	0.032	0.035	0.038	0.042	0.100	0.062		0.034	0.064	5.119
7145	chr7	6534692	6545001	+	0	NA	intron (NM_001145118, intron 20 of 21)	AluSx3|SINE|Alu	-15997	NM_006854	11014	Hs.654552	NM_006854	ENSG00000136240	KDELR2	ELP-1|ERD2.2	KDEL endoplasmic reticulum protein retention receptor 2	protein-coding	1.520	1.756	7.631	1.216	1.447	1.068	0.213	0.117	0.157	1.108	0.413	1.413	nan	0.697	0.134	1.951	3.035	0.792	nan	2.427	1.961	nan	1.272	4.129	4.423	0.493	0.689	nan	3.775	0.540	0.433	0.552	0.741	1.014	0.734	0.383	0.676	0.860	0.578	1.452	1.652	0.203	0.734	0.213	1.413	0.450	0.542	0.333	0.119
7605	chr8	17645854	17667073	+	0	NA	intron (NM_001001924, intron 1 of 14)	L1ME4a|LINE|L1	1963	NM_001001925	57509	Hs.7946	NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ICIS|MP44|MTSG1	microtubule associated tumor suppressor 1	protein-coding	0.904	1.063	nan	0.109	1.069	0.649	0.222	0.271	0.145	0.167	0.172	0.425	0.357	0.091	0.116	0.355	0.228	2.464	8.718	0.636	nan	1.124	0.259	1.041	1.143	0.097	0.235	0.350	0.413	0.359	0.200	0.113	0.198	0.405	0.483	0.381	0.727	0.995	0.866	0.056	0.033	0.105	0.303	0.222	0.425	0.009	1.158	0.014	0.342
3340	chr17	27358489	27401874	+	0	NA	intron (NM_016518, intron 3 of 7)	intron (NM_016518, intron 3 of 7)	10263	NM_016518	51268	Hs.462585	NM_016518	ENSG00000179761	PIPOX	LPIPOX	pipecolic acid and sarcosine oxidase	protein-coding	nan	nan	nan	0.272	1.155	0.661	1.482	0.128	0.088	0.256	0.199	0.401	1.513	0.120	0.148	1.573	2.294	0.509	0.600	0.592	0.754	2.426	0.955	0.351	0.435	0.567	0.891	0.937	1.283	4.160	3.295	0.996	1.540	1.086	1.255	1.518	nan	1.266	0.757	0.661	0.531	0.488	0.193	1.482	0.401	0.333	0.375	0.726	2.686
6498	chr5	147114024	147140424	+	0	NA	intron (NM_001270941, intron 1 of 21)	intron (NM_001270941, intron 1 of 21)	35187	NM_014790	9832	Hs.740461	NM_014790	ENSG00000176049	JAKMIP2	JAMIP2|NECC1	janus kinase and microtubule interacting protein 2	protein-coding	nan	0.969	1.467	1.361	1.542	0.856	0.272	0.100	0.074	0.513	0.251	0.527	3.459	0.029	0.103	0.387	0.307	0.874	0.840	0.709	0.755	3.176	1.120	0.222	0.235	1.336	1.675	4.724	3.807	1.550	1.586	0.426	0.535	4.533	6.620	0.556	1.945	0.843	0.532	1.347	1.443	1.202	0.283	0.272	0.527	0.332	1.250	0.132	0.380
5960	chr4	83291991	83297268	+	0	NA	exon (NM_002138, exon 1 of 8)	exon (NM_002138, exon 1 of 8)	520	NM_031369	3184	Hs.480073	NM_002138	ENSG00000138668	HNRNPD	AUF1|AUF1A|HNRPD|P37|hnRNPD0	heterogeneous nuclear ribonucleoprotein D	protein-coding	6.791	3.588	4.291	4.955	9.529	4.407	6.050	3.603	0.183	3.313	1.385	6.281	11.344	3.748	0.160	8.414	7.261	11.645	15.807	11.066	10.083	11.230	5.371	20.196	21.236	4.662	nan	9.768	14.835	11.388	15.646	3.998	8.024	7.875	8.711	11.287	8.971	2.879	1.633	6.057	7.490	1.392	4.474	6.050	6.281	1.262	3.399	1.867	2.995
7121	chr7	1053000	1096206	+	0	NA	intron (NM_032350, intron 2 of 4)	L1PREC2|LINE|L1	-6535	NR_134537	84310	Hs.653258	NM_032350	ENSG00000146540	C7orf50	YCR016W	chromosome 7 open reading frame 50	protein-coding	1.799	1.212	2.145	0.538	0.687	0.387	0.968	0.347	0.129	0.345	0.256	2.951	nan	0.619	0.137	0.815	1.275	0.803	nan	4.279	3.339	nan	0.311	1.490	1.457	0.756	1.205	nan	1.186	0.471	0.472	0.532	0.829	0.422	0.491	0.975	1.654	0.616	0.464	3.708	1.905	0.071	0.790	0.968	2.951	0.274	0.946	0.200	0.552
199	chr1	35051035	35064130	+	0	NA	Intergenic	Intergenic	77713	NR_030278	693137		NR_030278	ENSG00000207941	MIR552	MIRN552|hsa-mir-552	microRNA 552	ncRNA	0.731	nan	0.847	0.658	0.941	0.467	1.509	0.083	0.147	0.606	0.393	1.142	9.609	0.069	0.110	0.232	0.189	0.143	0.164	3.127	2.731	nan	0.092	0.143	0.140	0.165	0.375	6.439	14.496	nan	0.383	0.158	0.227	0.045	0.065	0.447	0.700	2.888	nan	6.273	3.191	0.043	0.109	1.509	1.142	0.200	0.125	0.075	0.484
4972	chr20	45971394	45992042	+	0	NA	intron (NR_134501, intron 1 of 1)	intron (NR_134501, intron 1 of 1)	413	NR_134501	101927377	Hs.668465	NR_134501	ENSG00000231119	LOC101927377	-	uncharacterized LOC101927377	ncRNA	nan	nan	3.887	7.019	7.063	4.014	4.044	3.777	0.280	2.456	1.353	5.746	11.404	4.937	0.193	8.678	9.702	4.039	8.134	8.285	7.989	nan	2.741	10.085	10.523	5.916	7.157	8.207	10.613	nan	8.555	5.382	8.037	2.228	2.559	5.195	8.254	2.388	1.095	4.064	5.601	0.563	2.075	4.044	5.746	2.013	2.630	6.918	3.317
6747	chr6	37385382	37393517	+	0	NA	Intergenic	L1M4c|LINE|L1	-11458	NM_015050	23070	Hs.520102	NM_015050	ENSG00000137200	CMTR1	FTSJD2|KIAA0082|MTr1|hMTr1	cap methyltransferase 1	protein-coding	nan	0.775	nan	0.129	0.207	0.059	0.267	0.147	0.256	0.155	0.140	0.399	0.390	0.080	0.106	1.522	1.382	0.864	nan	nan	0.360	7.958	3.128	1.857	1.718	0.655	1.071	2.120	3.520	1.184	1.044	0.138	0.269	0.714	1.024	3.237	3.417	0.539	0.451	0.020	0.066	0.116	0.099	0.267	0.399	0.119	0.037	0.122	0.878
7764	chr8	80522684	80528101	+	0	NA	intron (NM_007029, intron 1 of 4)	CpG	2343	NM_001199214	11075	Hs.521651	NM_007029	ENSG00000104435	STMN2	SCG10|SCGN10	stathmin 2	protein-coding	5.441	nan	nan	0.831	0.674	0.448	0.400	1.030	0.240	0.842	0.702	0.241	14.415	0.519	0.081	0.399	0.614	0.107	0.153	4.222	2.972	8.171	2.126	0.319	0.330	3.534	3.422	nan	3.589	5.630	7.458	0.446	0.554	2.244	1.547	2.678	4.181	0.628	0.612	2.095	0.987	0.577	0.471	0.400	0.241	0.253	0.092	0.145	0.862
7934	chr8	129437433	129443487	+	0	NA	non-coding (NR_121672, exon 3 of 8)	non-coding (NR_121672, exon 3 of 8)	136465	NR_121673	101927774	Hs.628730	NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA	nan	nan	nan	1.669	1.500	0.663	0.107	0.483		0.128	0.121	0.080	nan	0.142	0.060	0.442	0.798	0.211	0.532	0.605	0.485	5.496	1.243	nan	nan	0.948	1.350	14.812	5.615	0.304	0.211	0.352	0.405	0.527	1.829	0.250	0.424	0.477	0.261	0.362	2.235	0.152	1.572	0.107	0.080	0.159	0.728	0.049	0.041
1899	chr12	31367678	31392441	+	0	NA	Intergenic	Intergenic	-97191	NR_026806	79857	Hs.534485	NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA	2.542	nan	1.892	0.569	0.853	0.363	0.243	0.298	0.071	1.368	0.654	5.110	0.593	0.070	0.107	0.708	0.951	0.318	0.509	4.328	3.921	4.547	1.671	0.732	0.847	0.384	0.655	1.073	1.057	2.478	2.794	0.344	0.372	10.822	9.734	0.533	0.878	3.340	1.775	0.115	0.370	3.933	0.231	0.243	5.110	0.316	7.546	0.100	0.357
4606	chr2	175925320	175932628	+	0	NA	Intergenic	Intergenic	-58867	NR_038133	1123	Hs.380138	NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding	0.826	0.848	0.912	0.278	0.273	0.044	0.052	0.114	0.023	0.042	0.102	0.065	0.388	0.030	0.117	0.251	0.272	0.307	0.362	0.246	0.244	0.473	0.093	0.326	0.264	0.419	0.551	12.466	14.098	0.295	0.197	0.162	0.218	0.628	1.364	0.372	0.686	0.396	0.325	0.067	0.099	0.078	0.022	0.052	0.065	0.026	0.083	0.027	0.202
1929	chr12	48408203	48425915	+	0	NA	Intergenic	Intergenic	-18774	NM_033150	1280	Hs.408182	NM_001844	ENSG00000139219	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen type II alpha 1 chain	protein-coding	1.100	nan	0.970	0.419	0.311	0.172	0.116	0.085	0.082	0.177	0.131	0.175	0.134	0.031	0.098	0.597	0.939	0.326	0.450	0.788	0.722	4.573	1.217	0.338	0.289	0.182	0.288	0.915	1.019	0.287	0.171	0.517	0.863	1.509	1.403	0.219	0.326	0.531	0.664	0.173	0.639	0.536	0.058	0.116	0.175	0.049	0.064	0.621	0.072
6507	chr5	148794665	148819725	+	0	NA	intron (NR_105060, intron 3 of 4)	intron (NR_105060, intron 3 of 4)	-1286	NR_029684	406935		NR_029684	ENSG00000249669	MIR143	MIRN143|mir-143	microRNA 143	ncRNA	nan	0.945	0.917	0.084	0.314	0.198	0.165	0.717	0.238	0.087	0.045	0.189	0.636	0.140	0.095	0.238	0.250	0.323	0.535	0.330	0.401	0.695	0.234	0.312	0.353	0.408	0.655	0.876	0.937	0.646	0.756	0.301	0.312	0.150	0.347	1.141	4.217	0.458	0.436	0.091	0.117	0.038	0.096	0.165	0.189	0.058	0.320	0.056	2.979
3223	chr16	89986354	89991565	+	0	NA	promoter-TSS (NM_006086)	promoter-TSS (NM_006086)	542	NM_001197181	10381	Hs.511743	NM_006086	ENSG00000258947	TUBB3	CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4	tubulin beta 3 class III	protein-coding	nan	3.587	0.782	3.754	4.058	2.339	6.216	1.147	0.276	1.047	0.771	6.346	9.885	3.838	0.094	4.621	6.196	2.468	4.085	5.908	4.345	6.186	1.762	1.596	1.575	1.590	2.295	2.571	5.508	2.591	3.122	0.763	1.858	4.227	3.413	3.123	3.436	2.500	1.499	4.772	3.530	1.122	2.008	6.216	6.346	1.570	6.651	1.158	0.995
3244	chr17	2905922	2909400	+	0	NA	intron (NM_001330058, intron 14 of 24)	intron (NM_001330058, intron 14 of 24)	-38472	NR_110818	101927911	Hs.626373	NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA	3.616	1.698	1.812	0.889	3.137	1.023	2.436	0.213		0.508	0.264	2.310	2.526	0.063	0.063	1.485	3.665	2.151	5.586	2.696	2.268	2.138	0.442	1.873	1.733	1.554	2.420	2.751	3.828	3.389	3.129	0.782	1.384	0.739	1.013	1.869	3.983	0.988	0.709	2.670	1.750	0.216	0.218	2.436	2.310	3.869	6.798	0.741	1.554
5581	chr3	141048505	141066976	+	0	NA	intron (NM_001080412, intron 1 of 7)	L2a|LINE|L2	14685	NM_001080412	253461	Hs.518301	NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding	1.204	nan	nan	0.327	0.422	0.130	0.208	0.239	0.096	0.229	0.196	0.065	0.205	0.047	0.102	0.306	0.224	0.212	0.256	0.285	0.385	nan	2.133	0.279	0.297	0.308	nan	0.268	nan	nan	0.322	0.175	0.216	0.059	0.092	0.362	0.828	0.727	0.648	0.033	0.094	0.026	0.086	0.208	0.065	0.037	0.078	0.027	0.187
2280	chr13	40631204	40647147	+	0	NA	Intergenic	Intergenic	-116771	NR_046870	100874127	Hs.578028	NR_046870	ENSG00000230710	LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA	0.822	0.883	0.968	0.234	0.202	0.151	0.149	1.248	0.162	0.079	0.072	0.991	0.662	0.055	0.092	0.508	0.427	0.133	0.218	0.440	0.675	0.193	0.117	0.127	0.142	4.565	4.258	0.204	0.206	1.041	0.726	0.283	0.480	0.058	0.062	0.512	0.742	0.227	0.190	0.341	0.119	0.024	0.020	0.149	0.991	0.247	0.128	0.136	0.116
273	chr1	43967562	44056349	+	0	NA	intron (NM_001329138, intron 4 of 36)	intron (NM_001329138, intron 4 of 36)	15424	NM_130440	5792	Hs.272062	NM_002840	ENSG00000142949	PTPRF	BNAH2|LAR	protein tyrosine phosphatase, receptor type F	protein-coding	nan	1.335	nan	0.428	0.741	0.389	0.759	0.200	0.096	0.381	0.234	1.620	1.859	0.170	0.108	1.295	1.660	0.672	1.258	2.009	2.199	0.592	0.214	0.568	0.568	0.497	nan	nan	7.605	1.933	1.812	1.285	nan	0.394	0.394	0.728	2.029	0.999	0.676	1.286	1.473	0.180	0.398	0.759	1.620	0.688	0.233	1.066	1.147
471	chr1	117744646	117755873	+	0	NA	intron (NM_001253850, intron 1 of 4)	L2b|LINE|L2	3323	NR_045603	79679	Hs.546434	NM_024626	ENSG00000134258	VTCN1	B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1	V-set domain containing T cell activation inhibitor 1	protein-coding	nan	0.674	0.689	0.063	0.195	0.114	0.148	0.066	0.129	0.140	0.058	0.090	0.766	0.048	0.105	0.630	0.456	3.973	8.882	0.317	nan	0.378	0.190	0.220	0.279	0.613	1.043	0.212	0.382	0.305	0.215	0.360	0.500	0.071	0.112	0.324	0.505	0.523	0.615	0.094	0.094	0.008	0.064	0.148	0.090	0.019	0.027	0.061	0.120
6914	chr6	114166714	114183272	+	0	NA	Intergenic	Intergenic	-3521	NM_002356	4082	Hs.519909	NM_002356	ENSG00000277443	MARCKS	80K-L|MACS|PKCSL|PRKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	nan	2.918	nan	4.772	5.797	3.057	4.354	2.634	0.183	1.350	0.644	2.414	10.355	1.774	0.099	5.696	7.446	4.919	6.790	11.216	nan	nan	2.923	6.875	7.221	3.035	nan	2.215	3.494	7.762	9.009	2.862	5.931	3.382	2.508	6.582	nan	1.457	1.072	4.668	3.851	0.924	1.730	4.354	2.414	1.538	1.552	3.525	2.382
4991	chr20	48919897	48935718	+	0	NA	intron (NR_109950, intron 2 of 2)	MSTD|LTR|ERVL-MaLR	10072	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA	nan	nan	0.728	1.372	0.670	0.247	0.405	3.223	0.364	0.427	0.238	0.673	3.079	0.158	0.103	1.116	1.550	0.343	0.846	1.053	0.879	nan	1.364	0.884	0.927	0.570	1.216	3.065	3.065	nan	0.422	0.611	0.855	0.304	0.375	0.325	0.725	1.358	0.906	0.325	0.622	0.024	0.095	0.405	0.673	0.572	2.789	0.325	0.078
2262	chr13	31414988	31448792	+	0	NA	Intergenic	Intergenic	-24809	NR_103813	440132	Hs.729493	NR_103813	ENSG00000236094	LINC00545	-	long intergenic non-protein coding RNA 545	ncRNA	0.978	0.866	0.888	0.275	0.158	0.052	0.375	0.477	0.162	0.065	0.064	0.170	0.573	0.036	0.064	2.030	2.348	0.488	0.609	0.642	0.640	0.186	0.070	0.501	0.552	0.482	0.910	0.509	0.620	2.450	1.878	6.117	7.786	0.097	0.147	0.946	1.725	0.482	0.442	0.181	0.123	0.020	0.082	0.375	0.170	0.040	0.093	6.952	0.348
1936	chr12	49921171	49948275	+	0	NA	exon (NM_012284, exon 2 of 15)	exon (NM_012284, exon 2 of 15)	1783	NM_001314030	23416	Hs.64064	NM_012284	ENSG00000135519	KCNH3	BEC1|ELK2|Kv12.2	potassium voltage-gated channel subfamily H member 3	protein-coding	1.141	nan	1.851	0.855	0.805	0.392	0.790	0.161	0.065	0.377	0.397	1.511	0.288	0.177	0.066	1.135	1.922	0.331	0.502	3.582	3.188	3.918	1.016	2.268	2.432	0.553	1.016	1.903	2.089	1.405	1.294	0.508	0.615	1.810	1.524	0.653	1.044	2.035	1.135	1.404	2.300	0.458	0.047	0.790	1.511	0.165	0.525	0.113	0.205
7089	chr6	162147503	162159763	+	0	NA	intron (NM_013987, intron 6 of 10)	intron (NM_013987, intron 6 of 10)	261624	NR_134594	105378098	Hs.691066	NR_134593		LOC105378098	-	uncharacterized LOC105378098	ncRNA	0.782	nan	0.656	0.575	0.331	0.183	0.386	0.127	0.104	0.205	0.122	0.390	0.255	0.036	0.130	0.443	0.316	0.181	0.218	0.585	0.635	5.934	2.253	0.200	0.179	0.077	0.137	1.328	0.444	nan	0.182	0.129	0.215	1.660	1.684	0.111	0.222	0.370	0.331	0.013	0.051	0.274	0.007	0.386	0.390		0.050	0.018	0.022
2912	chr15	66109958	66130744	+	0	NA	Intergenic	AluJb|SINE|Alu	-35720	NM_001320835	10260	Hs.654567	NM_005848	ENSG00000174485	DENND4A	IRLB|MYCPBP	DENN domain containing 4A	protein-coding	1.175	1.490	nan	1.141	1.907	1.003	0.296	0.883	0.147	0.378	0.192	2.097	1.070	0.073	0.077	0.455	0.423	0.430	0.840	2.039	1.934	nan	2.750	0.185	0.216	0.316	0.617	2.963	3.823	1.849	1.336	0.485	0.562	1.021	1.820	0.437	0.935	1.728	0.835	0.176	0.146	0.279	0.244	0.296	2.097	0.079	3.742	0.271	0.143
131	chr1	21894158	21902082	+	0	NA	intron (NM_001127501, intron 7 of 10)	AluY|SINE|Alu	62269	NM_001177520	249	Hs.75431	NM_000478	ENSG00000162551	ALPL	AP-TNAP|APTNAP|HOPS|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	1.625	1.649	4.298	0.986	0.459	0.122	0.706	0.175	0.162	0.114	0.221	0.303	3.679	0.137	0.113	0.545	0.657	0.316	0.411	1.793	1.418	0.662	0.264	0.481	0.508	0.811	1.465	0.511	0.975	1.228	1.282	0.094	0.234	0.614	0.938	0.712	1.224	1.072	0.807	2.401	0.394	0.084	0.423	0.706	0.303	1.776	0.206	0.055	0.315
7686	chr8	58899240	58909670	+	0	NA	Intergenic	Intergenic	-2658	NM_147189	90362	Hs.154652	NM_147189	ENSG00000169122	FAM110B	C8orf72	family with sequence similarity 110 member B	protein-coding	0.766	nan	1.924	0.097	1.186	0.479	0.367	2.634	0.217	1.109	0.654	0.172	2.145	0.094	0.085	0.223	0.170	0.737	1.141	2.311	2.152	2.561	0.942	0.549	0.536	0.920	nan	0.362	0.661	1.211	1.281	0.472	0.897	0.889	0.557	0.110	0.187	3.880	1.883	0.021	0.034	0.091	0.114	0.367	0.172	0.019	0.058	0.237	0.047
7119	chr7	912773	924045	+	0	NA	intron (NM_015949, intron 1 of 8)	AluSg|SINE|Alu	2218	NM_015949	51608	Hs.107387	NM_015949	ENSG00000239857	GET4	C7orf20|CEE|CGI-20|TRC35	golgi to ER traffic protein 4	protein-coding	2.490	1.527	3.415	3.117	1.277	0.998	1.352	0.907	0.230	3.017	1.745	5.375	nan	1.600	0.165	2.115	2.318	2.017	nan	5.660	6.124	nan	1.263	4.623	4.533	1.197	1.862	nan	1.337	1.193	1.047	1.353	1.766	1.689	2.484	1.297	1.863	2.640	1.698	1.155	1.274	0.370	1.534	1.352	5.375	0.634	1.335	0.261	0.466
1565	chr11	86445919	86458699	+	0	NA	Intergenic	Intergenic	-49792	NM_001293180	11098	Hs.25338	NM_007173	ENSG00000150687	PRSS23	SIG13|SPUVE|ZSIG13	protease, serine 23	protein-coding	0.624	1.285	0.465	0.338	0.330	0.252	1.483	0.715	0.103	0.128	0.102	0.066	0.787	0.068	0.093	0.610	0.412	1.757	7.991	0.336	0.398	0.336	0.134	0.673	0.588	0.266	0.504	0.308	0.425	0.341	0.141	0.214	0.286	0.201	0.523	0.281	0.516	0.511	0.553	0.048	0.142	0.068	0.113	1.483	0.066	0.030	0.152	0.023	0.096
6016	chr4	129730367	129735019	+	0	NA	promoter-TSS (NM_001287443)	promoter-TSS (NM_001287443)	268	NM_001287442	79960	Hs.12420	NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding	7.969	8.653	nan	10.295	7.587	3.873	4.530	4.811	0.757	2.764	1.091	8.332	12.358	5.960	0.135	3.640	3.899	6.244	9.762	9.967	6.278	5.332	2.249	9.041	9.157	3.728	4.596	6.838	12.488	9.737	14.038	1.222	4.351	6.211	4.536	9.258	7.640	2.119	1.358	5.536	5.042	1.476	7.470	4.530	8.332	0.942	3.203	1.911	3.560
1872	chr12	25096915	25103991	+	0	NA	intron (NM_005504, intron 1 of 10)	intron (NM_005504, intron 1 of 10)	1940	NM_001178091	586	Hs.438993	NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding	nan	nan	8.558	0.883	0.182	0.068	0.182	1.223	0.050	1.990	1.101	0.232	0.488	3.027	0.131	1.436	1.208	0.399	0.782	0.271	0.403	0.170	0.084	20.396	20.968	1.261	1.529	1.035	1.082	5.724	7.941	2.976	4.761	2.186	1.826	0.496	1.552	2.724	1.474	0.024	0.087	0.608	4.630	0.182	0.232	0.081	0.014	1.683	0.114
7991	chr8	144230516	144245874	+	0	NA	Intergenic	Intergenic	3262	NM_002347	4062	Hs.159590	NM_002347	ENSG00000176956	LY6H	NMLY6	lymphocyte antigen 6 complex, locus H	protein-coding	1.072	0.882	nan	0.098	0.333	0.156	0.593	0.084	0.032	0.050	0.043	0.055	1.333	0.148	0.068	0.936	1.137	0.107	0.136	nan	1.281	nan	0.087	0.199	0.172	4.510	6.909	0.102	0.094	0.362	0.219	0.958	1.230	0.096	0.082	0.141	0.158	0.378	0.477	0.442	0.135	0.012	0.026	0.593	0.055	0.070	0.084	0.395	0.040
7097	chr6	166431626	166444157	+	0	NA	Intergenic	LTR1D|LTR|ERV1	-36364	NR_026860	90632	Hs.31917	NR_026860	ENSG00000223414	LINC00473	C6orf176|bA142J11.1	long intergenic non-protein coding RNA 473	ncRNA	0.471	nan	0.558	0.105	0.183	0.064	0.123	0.073	0.116	0.025	0.053	0.141	0.185	0.009	0.078	0.419	0.307	0.233	0.285	0.269	0.372	0.205	0.112	0.098	0.113	0.095	0.155	0.129	0.209	nan	0.138	0.096	0.174	0.061	0.056	0.110	0.206	0.145	0.196	0.022	0.036	0.015	0.019	0.123	0.141	0.008	3.599	0.039	0.040
6708	chr6	31780690	31786812	+	0	NA	promoter-TSS (NM_005527)	promoter-TSS (NM_005527)	460	NM_005345	3303	Hs.274402	NM_005345	ENSG00000204389	HSPA1A	HEL-S-103|HSP70-1|HSP70-1A|HSP70.1|HSP70I|HSP72|HSPA1	heat shock protein family A (Hsp70) member 1A	protein-coding	nan	2.270	nan	3.298	4.289	1.990	7.204	2.712	0.893	0.742	0.847	3.808	11.897	4.588	0.190	3.540	4.405	0.560	nan	nan	3.608	5.648	1.749	2.330	2.311	2.080	2.733	4.022	5.488	2.128	1.617	3.727	12.328	3.524	3.695	3.754	5.771	2.269	1.089	2.065	2.432	0.888	2.051	7.204	3.808	0.206	2.017	2.091	2.695
7489	chr7	133159776	133171336	+	0	NA	intron (NM_021807, intron 9 of 17)	AluJb|SINE|Alu	189921	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA	nan	nan	nan	0.174	0.386	0.159	0.477	0.220	0.085	0.260	0.135	0.321	0.628	0.075	0.165	0.476	0.525	0.365	0.302	0.553	0.659	nan	0.108	0.304	0.286	4.634	nan	0.498	0.554	nan	0.321	0.205	0.356	0.683	1.122	0.588	1.473	1.547	nan	3.782	0.115	0.286	0.144	0.477	0.321	0.075	0.079	0.060	0.454
3875	chr18	64735585	64750178	+	0	NA	Intergenic	Intergenic	-5940	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA	0.985	1.136	0.826	0.235	0.304	0.276	0.650	0.071	0.055	0.296	0.332	0.041	0.398	0.074	0.080	0.453	0.405	0.912	0.537	0.464	0.539	3.219	0.987	1.834	nan	0.748	nan	1.464	1.021	0.612	0.323	0.174	0.255	2.616	4.372	0.561	1.195	2.930	1.461	0.092	0.066	0.464	0.234	0.650	0.041	0.086	0.118	0.041	0.406
2513	chr14	29609358	29618324	+	0	NA	Intergenic	Eulor10|DNA?|DNA?	-358848	NR_135255	105370424	Hs.375809	NR_135255	ENSG00000257056	LOC105370424	-	uncharacterized LOC105370424	ncRNA	1.250	0.938	0.674	0.205	0.265	0.160	0.222	0.649	0.107	0.070	0.075	0.213	0.378	0.048	0.158	0.182	0.130	0.189	0.185	0.388	0.504	0.557	0.176	0.146	0.147	5.071	5.476	0.323	0.367	0.639	0.358	0.134	0.079	0.355	0.438	0.386	0.541	0.544	0.516	0.046	0.089	0.065	0.081	0.222	0.213	0.087	0.079	0.044	0.192
37	chr1	3730576	3740682	+	0	NA	intron (NM_014704, intron 20 of 21)	intron (NM_014704, intron 20 of 21)	-22561	NM_020710	57470	Hs.268488	NM_020710	ENSG00000130764	LRRC47	-	leucine rich repeat containing 47	protein-coding	2.062	nan	1.324	0.323	0.177	0.126	0.254	0.141	0.127	0.139	0.228	0.083	2.250	0.053	0.130	3.012	5.994	0.360	0.459	1.034	1.249	0.253	0.072	0.395	0.540	0.792	nan	nan	0.710	nan	2.209	2.027	3.612	0.054	0.071	0.833	1.102	0.948	0.717	6.259	2.786		1.524	0.254	0.083	0.689	0.010	3.121	0.245
6416	chr5	120710504	120718173	+	0	NA	Intergenic	L1M2b|LINE|L1	56093	NR_104999	102467226		NR_104999		LOC102467226	-	uncharacterized LOC102467226	ncRNA	nan	0.676	0.515	0.058	0.186	0.083	0.118	0.132	0.084	0.144	0.099	0.031	0.151	0.042	0.122	0.223	0.182	11.836	6.803	0.213	0.130	0.134	0.102	0.098	0.100	0.275	0.372	0.171	0.195	0.347	0.128	0.095	0.135	1.331	1.407	0.139	0.488	0.178	0.151	0.022	0.034	0.163	0.042	0.118	0.031		0.211	0.026	0.048
855	chr1	212869248	212874059	+	0	NA	intron (NM_018664, intron 1 of 2)	MIRb|SINE|MIR	1674	NM_018664	55509	Hs.62919	NM_018664	ENSG00000123685	BATF3	JDP1|JUNDM1|SNFT	basic leucine zipper ATF-like transcription factor 3	protein-coding	1.761	1.543	1.511	0.717	1.397	0.620	0.612	0.948	0.234	0.549	0.309	0.491	nan	0.603	0.083	0.355	0.410	9.795	5.039	1.504	1.235	nan	0.263	2.126	2.409	0.913	nan	0.662	1.050	1.232	0.757	0.272	0.253	0.452	0.432	1.414	2.158	0.658	0.543	0.279	0.284	0.060	0.182	0.612	0.491	0.323	0.064	0.057	0.560
3659	chr18	8704161	8733195	+	0	NA	intron (NM_015210, intron 3 of 16)	intron (NM_015210, intron 3 of 16)	1309	NM_015210	23255	Hs.707920	NM_015210	ENSG00000168502	MTCL1	CCDC165|KIAA0802|SOGA2	microtubule crosslinking factor 1	protein-coding	1.625	1.636	1.951	0.917	0.839	0.553	0.679	0.513	0.188	0.556	0.413	0.948	nan	0.303	0.105	1.398	1.784	0.520	0.908	1.708	1.495	nan	0.842	1.213	1.109	1.115	nan	1.069	1.755	nan	1.922	0.392	0.919	2.975	3.330	0.580	nan	nan	1.095	1.445	0.815	0.755	0.689	0.679	0.948	0.391	0.275	0.270	0.162
6269	chr5	55926836	55948308	+	0	NA	Intergenic	Intergenic	-35513	NM_001287053	101928448	Hs.208052	NM_001287053	ENSG00000225940	C5orf67	-	chromosome 5 open reading frame 67	protein-coding	nan	nan	1.080	0.149	0.533	0.240	0.280	0.188	0.075	0.182	0.104	0.117	1.208	0.081	0.113	0.243	0.199	1.415	5.574	0.289	0.300	nan	1.109	0.243	0.217	0.204	0.284	0.349	0.524	nan	0.166	0.067	0.105	1.190	0.792	0.213	0.432	0.711	0.445	0.273	0.113	0.178	0.059	0.280	0.117	0.073	0.029	0.023	0.149
1839	chr12	12577341	12604333	+	0	NA	intron (NM_001330356, intron 2 of 2)	AluJo|SINE|Alu	80824	NM_058169	118426	Hs.504805	NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding	1.111	1.202	1.061	0.529	4.265	2.129	0.210	0.114	0.030	1.393	0.630	0.276	0.475	0.080	0.136	0.191	0.219	0.343	0.640	nan	0.711	6.344	1.673	0.388	0.425	0.568	0.826	1.325	1.235	0.371	0.204	0.209	0.284	0.541	0.926	0.363	0.907	2.509	1.046	0.344	0.282	0.070	0.111	0.210	0.276	0.029	0.418	0.062	0.224
1788	chr12	6289913	6336693	+	0	NA	intron (NM_001769, intron 1 of 7)	MIR3|SINE|MIR	3821	NM_001769	928	Hs.114286	NM_001769	ENSG00000010278	CD9	BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29	CD9 molecule	protein-coding	0.691	nan	nan	0.745	0.298	0.165	0.361	0.272	0.079	0.138	0.106	0.647	1.990	0.340	0.099	0.509	0.832	0.760	1.882	nan	0.841	1.281	0.454	0.647	0.637	2.240	2.791	1.762	1.622	0.402	0.201	0.595	0.906	0.206	0.204	0.584	nan	0.245	0.236	1.706	1.282	0.022	0.219	0.361	0.647	0.205	0.074	0.322	0.285
2186	chr12	122515677	122530045	+	0	NA	intron (NM_014938, intron 1 of 16)	MIRc|SINE|MIR	6227	NM_014938	22877	Hs.437153	NM_014938	ENSG00000175727	MLXIP	MIR|MONDOA|bHLHe36	MLX interacting protein	protein-coding	1.933	1.665	1.236	1.151	1.655	0.884	0.752	0.430	0.131	0.735	0.490	1.505	2.204	0.799	0.152	1.530	2.022	0.952	1.387	1.982	1.885	nan	0.758	2.462	2.304	1.434	2.096	3.067	4.096	1.659	1.697	3.709	6.741	1.321	1.500	0.785	1.031	1.909	1.070	1.047	2.052	0.273	0.706	0.752	1.505	0.220	0.619	6.032	0.319
680	chr1	178297555	178330322	+	0	NA	intron (NM_004841, intron 1 of 15)	intron (NM_004841, intron 1 of 15)	3332	NM_004841	9462	Hs.496139	NM_004841	ENSG00000075391	RASAL2	NGAP	RAS protein activator like 2	protein-coding	nan	nan	nan	0.150	0.302	0.094	0.273	1.513	0.201	0.173	0.201	0.047	0.421	0.242	0.136	0.532	0.311	2.665	8.009	nan	0.475	0.482	0.173	0.397	0.390	0.542	0.748	0.441	0.497	0.386	0.197	0.481	0.712	0.078	0.125	0.482	nan	0.454	0.443	0.086	0.223	0.017	0.070	0.273	0.047	0.027	0.078	0.127	0.227
3962	chr19	10675227	10683284	+	0	NA	exon (NM_079421, exon 2 of 3)	exon (NM_079421, exon 2 of 3)	376	NM_001800	1032	Hs.435051	NM_001800	ENSG00000129355	CDKN2D	INK4D|p19|p19-INK4D	cyclin dependent kinase inhibitor 2D	protein-coding	3.275	2.295	2.735	3.160	3.409	1.581	2.671	1.072	0.378	1.952	0.781	3.744	7.890	1.598	0.112	3.646	3.041	3.118	4.266	8.160	6.799	6.781	3.109	6.687	6.712	3.211	4.244	5.246	7.981	6.067	6.452	0.919	1.908	4.580	4.659	3.680	3.691	3.238	1.627	3.752	1.932	1.334	1.534	2.671	3.744	1.143	1.586	0.746	1.249
7346	chr7	80785979	80795525	+	0	NA	Intergenic	Intergenic	-242085	NM_006379	10512	Hs.269109	NM_006379	ENSG00000075223	SEMA3C	SEMAE|SemE	semaphorin 3C	protein-coding	1.557	0.667	0.967	0.151	1.226	0.574	0.619	0.662	0.168	0.231	0.208	0.342	0.759	1.054	0.150	0.489	0.311	0.312	0.394	1.778	1.710	0.164	0.069	0.079	0.109	1.374	1.724	0.632	0.403	2.950	2.345	0.245	0.328	1.448	1.933	0.265	nan	0.578	0.551	7.881	0.895	0.340	2.942	0.619	0.342	0.784	0.287	0.132	0.130
7876	chr8	110336709	110349725	+	0	NA	intron (NM_032869, intron 1 of 9)	L1PA10|LINE|L1	-1055	NM_001128211	84955	Hs.380291	NM_032869	ENSG00000120526	NUDCD1	CML66|OVA66	NudC domain containing 1	protein-coding	nan	nan	2.004	1.620	1.459	0.738	0.611	1.003	0.236	0.494	0.263	1.068	3.848	0.841	0.153	1.476	1.171	1.412	1.899	3.228	3.075	nan	1.313	10.509	nan	2.224	nan	5.970	6.652	1.581	1.522	0.786	1.626	1.094	1.467	1.441	2.095	1.296	0.833	0.483	0.818	0.139	0.721	0.611	1.068	0.135	0.904	0.429	0.455
7259	chr7	39111221	39143934	+	0	NA	intron (NM_001166018, intron 3 of 10)	intron (NM_001166018, intron 3 of 10)	-74410	NR_138047	100689074	Hs.675876	NR_138047		POU6F2-AS2	-	POU6F2 antisense RNA 2	ncRNA	1.175	1.003	1.160	0.160	0.367	0.235	0.440	0.100	0.064	1.082	0.855	0.435	0.977	0.063	0.181	0.508	0.424	0.191	0.251	1.028	nan	5.409	1.993	0.678	0.581	0.232	nan	nan	nan	0.681	0.422	0.146	0.177	0.801	0.631	0.630	nan	2.046	1.076	1.211	0.689	0.122	0.281	0.440	0.435	0.161	0.563	0.049	0.657
2783	chr14	104090190	104100147	+	0	NA	promoter-TSS (NM_005552)	promoter-TSS (NM_005552)	-357	NM_001130107	3831	Hs.20107	NM_005552	ENSG00000126214	KLC1	KLC|KNS2|KNS2A	kinesin light chain 1	protein-coding	4.696	2.165	3.640	3.631	2.031	1.072	3.242	1.776	0.503	1.589	0.854	3.182	3.819	1.991	0.170	2.197	2.107	2.844	4.182	5.261	4.345	8.589	3.424	3.194	3.448	1.822	2.467	6.494	6.679	4.295	4.419	1.935	2.434	2.482	2.902	2.111	2.419	3.812	1.876	2.410	2.692	0.477	1.168	3.242	3.182	0.769	2.558	0.336	0.474
334	chr1	60591308	60606222	+	0	NA	Intergenic	Intergenic	-59323	NM_152377	127795	Hs.47385	NM_152377	ENSG00000162598	C1orf87	CREF	chromosome 1 open reading frame 87	protein-coding	1.228	0.848	nan	0.115	0.240	0.113	0.163	0.714	0.114	0.263	0.104	0.180	0.303	0.080	0.092	0.372	0.241	0.146	0.308	0.428	0.655	0.994	0.323	0.320	0.279	nan	nan	0.426	nan	0.605	0.368	0.181	0.246	0.177	0.178	0.441	1.207	2.121	0.933	0.059	0.090	0.006	0.053	0.163	0.180	0.071	0.034	0.080	0.423
7735	chr8	70472588	70480746	+	0	NA	intron (NM_001128206, intron 4 of 21)	intron (NM_001128206, intron 4 of 21)	-28468	NR_132437	23213	Hs.409602	NM_015170	ENSG00000137573	SULF1	SULF-1	sulfatase 1	protein-coding	1.026	1.569	1.688	2.186	0.218	0.039	0.671	0.173	0.060	0.499	0.377	0.308	3.996	0.053	0.048	0.272	0.112	0.201	0.436	2.830	2.372	2.827	1.172	0.265	0.402	0.446	0.676	0.396	1.029	0.320	0.127	0.106	0.173	1.206	2.090	0.271	0.350	6.391	3.142	0.020	0.326	0.035	0.478	0.671	0.308	0.096	0.125	0.037	0.160
2292	chr13	47116373	47162762	+	0	NA	intron (NM_001164211, intron 1 of 19)	MIRc|SINE|MIR	12271	NM_015116	23143	Hs.507971	NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding	1.720	1.377	1.554	0.233	0.341	0.145	0.027	0.797	0.163	0.325	0.217	0.072	1.037	0.255	0.078	1.173	1.223	0.745	0.737	0.717	0.687	0.860	0.313	0.349	0.350	1.281	1.814	0.252	0.382	2.091	2.284	0.700	1.602	0.433	0.398	2.790	5.874	0.743	0.482	0.261	0.365	0.134	0.131	0.027	0.072	0.138	0.166	0.639	1.760
3582	chr17	76272251	76278472	+	0	NA	promoter-TSS (NR_073178)	promoter-TSS (NR_073178)	-788	NR_073178	100996291	Hs.744493	NR_073178	ENSG00000204277	LINC01993	-	long intergenic non-protein coding RNA 1993	ncRNA	1.023	0.896	0.739	0.074	1.406	0.645	0.552	0.060	0.027	0.227	0.185	0.518	0.604	0.106	0.088	7.624	11.853	1.590	1.300	0.901	1.106	0.841	0.358	8.589	9.355	nan	0.502	3.169	4.748	1.361	0.901	3.155	5.724	0.155	0.163	0.749	1.263	nan	0.513	0.134	1.491	0.031	0.508	0.552	0.518	0.171	3.606	3.008	0.100
1997	chr12	64777441	64785776	+	0	NA	intron (NM_001170633, intron 1 of 12)	AluJb|SINE|Alu	2737	NM_001170633	115749	Hs.535190	NM_001099676	ENSG00000185306	C12orf56	-	chromosome 12 open reading frame 56	protein-coding	1.287	1.320	0.802	2.596	3.383	2.075	0.926	0.190	0.077	0.181	0.275	5.133	0.846	0.432	0.121	0.582	0.577	0.285	0.252	10.980	nan	1.827	0.421	0.694	0.722	0.240	0.475	3.630	6.098	0.776	0.776	0.501	1.451	3.821	3.314	0.161	0.340	0.895	0.662	2.593	4.293	0.550	4.392	0.926	5.133	1.406	0.048	0.912	0.076
6650	chr6	20431824	20448819	+	0	NA	intron (NM_001243076, intron 1 of 6)	intron (NM_001243076, intron 1 of 6)	36411	NM_001243076	1871	Hs.269408	NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding	1.608	0.880	nan	0.386	0.454	0.245	0.264	0.343	0.156	0.378	0.222	0.400	nan	0.103	0.113	0.442	0.339	0.490	nan	0.486	0.714	nan	0.205	0.609	0.616	3.349	4.574	1.107	1.098	0.625	0.452	0.186	0.405	0.939	1.360	0.734	1.319	0.953	0.783	0.072	0.116	0.174	0.158	0.264	0.400	0.519	0.364	0.076	0.392
6888	chr6	106806121	106810970	+	0	NA	Intergenic	CpG	-34850	NM_001286111	9474	Hs.486063	NM_004849	ENSG00000057663	ATG5	APG5|APG5-LIKE|APG5L|ASP|hAPG5	autophagy related 5	protein-coding	0.742	nan	nan	0.513	0.479	0.099	0.316	0.096	0.034	0.200	0.141	0.446	2.337	0.134	0.101	14.529	19.191	0.573	1.191	1.632	nan	4.255	1.146	1.080	1.298	0.193	0.290	0.861	1.193	nan	0.496	0.772	1.285	0.318	0.361	0.204	0.510	0.798	0.523	0.070	0.346	0.020	0.184	0.316	0.446	0.159	0.104	0.232	0.071
5256	chr22	36846819	36858941	+	0	NA	Intergenic	AluSp|SINE|Alu	24807	NM_012473	25828	Hs.211929	NM_012473	ENSG00000100348	TXN2	COXPD29|MT-TRX|MTRX|TRX2	thioredoxin 2	protein-coding	1.803	nan	1.291	2.042	4.105	2.151	1.759	0.668	0.559	0.619	0.406	5.667	2.420	0.668	0.179	0.805	1.113	0.778	1.900	3.428	2.777	4.087	0.957	2.331	2.339	0.293	nan	6.433	6.210	nan	1.158	1.086	1.585	1.583	1.569	0.430	0.945	1.905	0.877	3.020	2.633	0.392	1.082	1.759	5.667	2.196	2.921	1.059	0.132
8400	chrX	109244940	109259598	+	0	NA	intron (NM_032227, intron 2 of 6)	Plat_L3|LINE|CR1	5927	NM_032227	84187	Hs.496572	NM_017698	ENSG00000157600	TMEM164	bB360B22.3	transmembrane protein 164	protein-coding	nan	nan	nan	0.994	2.024	1.165	0.969	0.174	0.044	1.902	0.912	1.103	2.890	0.933	0.181	0.818	1.287	0.707	0.809	2.276	2.077	2.010	0.831	0.958	1.024	1.064	1.508	1.957	2.678	1.905	1.893	0.499	1.209	1.577	1.384	1.282	3.307	0.987	0.553	1.149	0.789	0.611	0.651	0.969	1.103	0.291	0.536	0.395	0.849
1680	chr11	117524884	117614944	+	0	NA	intron (NM_020693, intron 3 of 32)	intron (NM_020693, intron 3 of 32)	98062	NM_020693	57453	Hs.659513	NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding	0.730	1.095	0.821	0.471	0.611	0.312	0.408	0.043	0.029	0.321	0.213	1.499	0.878	0.066	0.093	1.669	nan	0.298	0.399	0.936	1.050	2.782	0.709	0.435	0.470	0.719	nan	2.470	1.919	0.471	0.326	3.392	5.514	0.426	0.433	0.420	1.124	1.452	0.945	1.679	0.208	0.081	0.294	0.408	1.499	0.165	0.545	5.514	0.514
2879	chr15	54123272	54131435	+	0	NA	Intergenic	Intergenic	-72278	NR_102334	256764	Hs.122125	NM_182758	ENSG00000166415	WDR72	AI2A3	WD repeat domain 72	protein-coding	0.773	0.797	0.866	1.005	1.222	0.490	0.538	0.091	0.039	0.810	0.459	2.975	4.277	0.013	0.069	0.240	0.118	0.262	0.242	0.893	1.148	0.284	0.089	0.240	0.292	0.595	1.082	3.379	5.626	0.482	0.272	0.077	0.180	7.179	6.589	0.214	0.306	2.787	1.248	3.089	0.711	2.030		0.538	2.975	0.061	0.912	0.036	0.044
5984	chr4	106063431	106069861	+	0	NA	promoter-TSS (NM_017628)	promoter-TSS (NM_017628)	-386	NM_017628	54790	Hs.367639	NM_017628	ENSG00000168769	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding	2.923	nan	nan	2.891	3.995	2.075	2.494	2.187	0.299	0.782	0.588	3.333	8.599	2.100	0.088	4.000	4.019	13.356	11.857	5.257	4.291	2.365	0.885	7.466	7.703	2.149	nan	2.531	4.595	3.751	4.290	1.812	3.804	2.158	1.533	3.128	nan	2.087	1.139	0.785	1.902	0.324	1.654	2.494	3.333	0.316	1.179	1.172	0.977
5847	chr4	22847623	22855735	+	0	NA	Intergenic	Intergenic	135967	NM_001277225	57733	Hs.653107	NM_020973	ENSG00000249948	GBA3	CBG|CBGL1|GLUC|KLRP	glucosylceramidase beta 3 (gene/pseudogene)	protein-coding	1.426	0.491	nan	0.109	0.275	0.198	0.168	0.112	0.062	1.118	1.150	0.059	0.590		0.061	0.474	0.342	0.197	0.260	0.615	0.865	0.776	0.395	0.289	0.228	0.198	0.368	0.268	0.369	0.788	0.648	0.127	0.267	0.702	0.417	0.099	0.265	5.757	2.697	0.143	0.219	0.270	0.079	0.168	0.059		0.013	0.061	0.046
4043	chr19	38144362	38148000	+	0	NA	5' UTR (NM_014898, exon 1 of 6)	5' UTR (NM_014898, exon 1 of 6)	132	NM_014898	22835	Hs.716719	NM_014898	ENSG00000120784	ZFP30	ZNF745	ZFP30 zinc finger protein	protein-coding	8.440	4.356	4.877	12.998	7.228	3.693	4.258	2.105	0.223	1.830	1.314	6.778	28.265	6.233	0.138	4.175	5.636	3.351	5.741	15.176	12.394	12.758	5.428	14.748	15.680	3.953	5.279	7.244	9.740	nan	10.584	3.928	6.801	7.460	6.602	6.079	7.987	5.411	2.680	6.321	7.630	1.151	3.157	4.258	6.778	1.678	3.679	3.228	2.679
5995	chr4	114676143	114685852	+	0	NA	intron (NM_001321576, intron 1 of 17)	intron (NM_001321576, intron 1 of 17)	2086	NM_172127	817	Hs.144114	NM_001221	ENSG00000145349	CAMK2D	CAMKD	calcium/calmodulin dependent protein kinase II delta	protein-coding	2.385	2.733	1.861	3.523	4.731	2.642	1.949	2.678	0.248	1.291	0.661	4.168	4.926	0.335	0.050	1.104	1.390	7.478	12.648	0.156	0.191	4.391	2.560	2.910	3.040	2.543	3.374	3.472	5.264	2.529	2.870	2.282	4.482	2.779	3.301	2.474	2.946	1.576	0.864	0.509	1.166	0.795	1.758	1.949	4.168	0.340	1.105	1.547	0.981
2454	chr13	112223729	112231624	+	0	NA	Intergenic	Intergenic	-20680	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA	0.724	nan	0.836	2.918	0.736	0.445	3.662	0.019	0.082	0.375	0.187	1.751	1.929	0.014	0.107	0.446	0.102	0.084	0.161	3.184	3.066	4.624	1.603	0.042	0.022	0.021	0.073	4.920	6.991	1.706	1.893	0.325	0.356	3.144	2.808	0.103	0.108	0.796	0.342	1.185	0.715	0.534	5.053	3.662	1.751	0.024	0.624	0.163	0.031
2077	chr12	92526964	92542131	+	0	NA	3' UTR (NM_001731, exon 2 of 2)	3' UTR (NM_001731, exon 2 of 2)	942	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA	3.077	2.443	2.213	3.785	2.197	0.873	1.281	3.567	0.391	1.622	0.916	2.031	nan	0.956	0.124	2.715	3.732	4.018	4.713	6.814	6.495	4.829	1.992	12.620	12.184	3.361	nan	3.414	nan	6.515	6.595	4.183	7.112	2.933	2.864	1.977	3.134	2.343	1.259	2.050	3.079	0.771	1.610	1.281	2.031	0.464	1.485	3.679	1.270
2036	chr12	79255589	79267447	+	0	NA	intron (NM_001291901, intron 1 of 9)	intron (NM_001291901, intron 1 of 9)	3069	NM_001291901	6857	Hs.310545	NM_005639	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin 1	protein-coding	nan	1.451	1.474	2.965	4.207	2.008	0.710	1.393	0.175	2.800	1.699	2.911	8.130	0.073	0.072	0.288	0.330	0.108	0.219	7.603	7.125	6.835	2.473	0.524	0.516	4.883	5.933	nan	7.604	5.689	5.833	0.157	0.344	2.964	3.614	2.341	4.166	nan	1.587	1.120	1.483	0.786	0.694	0.710	2.911	0.402	1.445	0.041	1.788
7833	chr8	101513575	101526553	+	0	NA	Intergenic	Intergenic	51875	NM_001270378	157567	Hs.530199	NM_198401	ENSG00000186106	ANKRD46	ANK-S|GENX-115279	ankyrin repeat domain 46	protein-coding	2.870	nan	nan	1.403	4.200	2.366	1.984	1.213	0.186	0.748	0.198	4.666	4.423	0.042	0.074	0.395	0.484	0.791	2.142	3.515	3.449	nan	3.429	0.613	0.545	1.020	nan	5.407	nan	nan	0.662	0.234	0.419	1.765	2.272	0.484	nan	2.564	1.279	1.194	1.507	0.198	0.494	1.984	4.666	0.261	1.830	0.114	0.485
5588	chr3	143688607	143699600	+	0	NA	intron (NM_001134470, intron 1 of 2)	intron (NM_001134470, intron 1 of 2)	1936	NM_001134470	205428	Hs.288954	NM_173552	ENSG00000181744	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding	4.348	nan	nan	5.702	5.885	2.900	1.874	1.234	0.233	2.141	1.171	0.219	7.815	1.532	0.072	1.784	2.706	3.216	4.553	3.258	2.713	nan	4.001	4.117	4.191	4.723	nan	2.788	nan	nan	6.684	0.840	2.882	2.302	1.620	5.972	8.236	2.256	1.436	1.125	1.289	0.483	3.072	1.874	0.219	0.374	1.086	0.751	3.093
1552	chr11	82698969	82725180	+	0	NA	intron (NM_001286060, intron 1 of 4)	AluYd8|SINE|Alu	33537	NM_001286059	27314	Hs.40758	NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding	0.897	0.867	0.840	0.967	1.332	0.648	0.373	1.081	0.079	1.593	0.667	0.156	0.595	0.099	0.135	0.606	0.617	0.261	0.334	0.524	0.599	5.172	1.476	0.585	0.656	0.698	1.090	2.516	2.212	0.859	0.526	0.215	0.315	4.817	5.641	0.591	1.340	2.655	1.338	0.104	0.130	1.619	0.097	0.373	0.156	0.045	1.732	0.042	0.487
1194	chr10	102819191	102828060	+	0	NA	intron (NM_030929, intron 2 of 4)	intron (NM_030929, intron 2 of 4)	-2431	NR_135068	81621	Hs.534859	NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding	nan	nan	4.088	2.147	5.470	2.522	1.373	2.787	0.312	1.276	0.455	4.803	5.675	3.609	0.088	3.497	3.924	5.440	7.142	4.349	3.279	6.861	3.078	5.714	6.027	1.791	nan	9.388	11.528	1.930	1.807	1.324	2.724	2.053	2.410	2.673	nan	2.197	1.048	3.117	3.758	0.570	1.404	1.373	4.803	0.730	3.665	1.931	0.961
7271	chr7	44884890	44896941	+	0	NA	Intergenic	Intergenic	-3190	NM_201516	94239	Hs.488189	NM_012412	ENSG00000105968	H2AFV	H2A.Z-2|H2AV	H2A histone family member V	protein-coding	3.967	3.286	nan	2.381	2.911	1.393	2.257	1.702	0.362	1.686	0.881	2.355	5.962	2.631	0.204	3.991	4.020	2.580	3.590	5.359	5.136	4.376	2.675	4.029	4.213	2.864	3.393	3.469	5.716	3.757	4.059	2.365	3.511	4.336	4.860	4.112	3.605	1.978	1.232	3.397	2.289	0.771	1.609	2.257	2.355	0.522	1.551	0.819	1.161
4433	chr2	92267430	92270689	+	0	NA	Intergenic	HSATII|Satellite|Satellite	139900	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo	20.582	20.592	19.499	4.743	10.956	6.399	7.722	5.817	35.305	7.143	13.171	3.161	16.780	3.749	12.226	20.265	13.288	11.683	13.796	16.200	19.561	10.780	12.998	12.157	12.805	17.824	16.794	15.006	13.504	20.648	11.277	17.678	20.582	10.125	13.665	17.779	16.955	8.791	11.309	2.738	5.395	3.768	2.136	7.722	3.161	1.221	1.660	4.887	5.996
41	chr1	5804422	5832212	+	0	NA	Intergenic	Intergenic	104484	NR_039838	100616421		NR_039838	ENSG00000264101	MIR4689	mir-4689	microRNA 4689	ncRNA	0.502	nan	1.898	3.712	0.241	0.167	0.193	0.086	0.027	0.096	0.110	1.309	1.136	0.058	0.095	0.234	0.116	0.113	0.197	5.350	4.419	0.290	0.067	0.161	0.210	0.164	nan	nan	4.527	nan	0.343	0.151	0.141	0.039	0.056	0.172	0.289	0.456	0.434	1.217	0.245	0.014	0.014	0.193	1.309	0.324	0.208	0.021	0.062
3084	chr16	20875152	20893898	+	0	NA	intron (NM_173475, intron 1 of 2)	intron (NM_173475, intron 1 of 2)	-26665	NM_020424	57149	Hs.745012	NM_020424	ENSG00000102897	LYRM1	A211C6.1	LYR motif containing 1	protein-coding	1.149	0.757	nan	0.267	0.247	0.120	0.269	0.389	0.127	0.050	0.134	0.077	0.373	0.070	0.073	0.291	0.275	0.278	0.499	0.274	0.310	nan	0.199	0.415	0.426	0.797	1.457	1.238	2.065	3.568	2.223	0.233	0.316	0.101	0.056	2.276	6.903	0.742	0.542	0.081	0.076	0.020	0.059	0.269	0.077	0.103	0.075	0.064	3.020
2887	chr15	57883482	57898705	+	0	NA	intron (NR_104371, intron 1 of 16)	intron (NR_104371, intron 1 of 16)	6991	NM_001018091	145781	Hs.437256	NM_001018090	ENSG00000137878	GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GRINL1A complex locus 1	protein-coding	0.721	0.678	1.893	0.265	0.283	0.160	0.157	0.151	0.127	0.127	0.182	0.110	0.607	0.050	0.082	4.319	4.291	1.280	0.925	0.293	0.337	1.887	0.378	0.212	0.257	0.306	0.600	0.406	0.407	0.594	0.396	1.016	1.053	0.127	0.161	0.158	0.337	0.806	0.539	0.040	0.113	0.019	0.036	0.157	0.110	0.038	0.119	0.266	0.071
2223	chr12	133403197	133407187	+	0	NA	promoter-TSS (NM_005895)	promoter-TSS (NM_005895)	96	NM_005895	2802	Hs.507333	NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding	3.252	3.318	1.814	3.749	3.240	1.404	2.545	2.012	0.325	2.166	0.761	2.563	5.484	2.424	0.087	3.760	3.738	4.407	6.488	4.798	4.402	6.289	3.634	9.903	10.782	2.722	3.268	nan	9.518	3.516	3.469	2.966	5.457	3.022	4.092	3.512	3.043	2.911	1.545	3.463	5.535	0.643	17.366	2.545	2.563	0.660	2.796	0.894	0.870
3532	chr17	71526830	71555503	+	0	NA	intron (NM_001144952, intron 1 of 44)	intron (NM_001144952, intron 1 of 44)	31344	NR_135635	101928251	Hs.434726	NR_135635	ENSG00000264985	LOC101928251	-	uncharacterized LOC101928251	ncRNA	1.357	0.897	1.274	0.289	1.675	0.737	0.518	0.129	0.090	0.252	0.193	0.459	0.952	0.053	0.068	0.531	0.813	0.322	0.500	1.059	1.149	1.011	0.514	0.255	0.287	nan	0.529	1.850	2.197	2.722	2.874	0.460	0.626	0.188	0.206	1.890	5.633	nan	0.738	0.502	1.235	0.030	0.125	0.518	0.459	0.082	0.625	0.135	2.161
3380	chr17	36735638	36764469	+	0	NA	intron (NM_025248, intron 1 of 18)	intron (NM_025248, intron 1 of 18)	12130	NM_025248	80725	Hs.448872	NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding	nan	2.348	2.435	0.177	2.483	1.562	1.164	0.174	0.067	0.912	0.414	0.747	1.800	0.350	0.049	2.349	4.321	2.157	2.187	nan	1.201	2.192	0.574	4.103	4.029	0.951	1.383	1.663	2.165	nan	1.993	0.968	1.459	1.806	2.130	1.371	2.595	1.295	0.735	1.055	1.100	0.353	0.083	1.164	0.747	0.421	0.463	0.752	0.693
4292	chr2	38573120	38606282	+	0	NA	intron (NM_001330462, intron 1 of 13)	MER5A|DNA|hAT-Charlie	13971	NM_001330460	64225	Hs.594950	NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding	1.355	nan	nan	0.501	0.592	0.242	0.488	0.573	0.194	0.433	0.298	0.566	1.331	0.507	0.136	0.983	1.125	1.285	2.525	1.110	1.041	1.150	0.445	7.545	nan	0.802	1.142	0.993	1.342	nan	1.012	0.637	1.226	0.404	0.288	1.241	1.807	0.741	0.504	0.233	0.472	0.093	0.243	0.488	0.566	0.094	0.255	0.285	0.388
1097	chr10	34916282	34929621	+	0	NA	intron (NM_001184785, intron 2 of 24)	intron (NM_001184785, intron 2 of 24)	181302	NM_001184791	56288	Hs.131489	NM_019619	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding	0.742	0.858	0.900	0.086	2.170	1.125	0.362	0.967	0.243	0.498	0.185	0.799	0.412	0.164	0.087	1.088	0.740	2.623	nan	1.241	1.101	1.983	0.677	9.544	9.525	0.420	0.734	0.578	0.937	0.223	0.114	0.673	1.152	0.246	0.186	0.255	0.567	0.699	0.485	0.034	0.094	0.065	0.113	0.362	0.799	0.102	0.167	0.814	0.171
5964	chr4	89623755	89629344	+	0	NA	intron (NM_001271602, intron 24 of 24)	L1MB8|LINE|L1	-4391	NR_002806	285512	Hs.744957	NR_002806	ENSG00000248019	FAM13A-AS1	FAM13A1OS|FAM13AOS|NCRNA00039	FAM13A antisense RNA 1	ncRNA	0.615	0.584	0.641	0.219	0.356	0.171	0.299	0.340	0.029	0.168	0.118	0.172	0.259	0.083	0.125	0.845	0.391	9.960	2.773	0.390	0.359	0.227	0.077	0.552	0.883	0.386	nan	0.578	0.678	0.425	0.183	0.300	0.498	0.075	0.118	0.177	nan	0.497	0.476	0.040	0.102		0.071	0.299	0.172		0.110	0.160	0.066
838	chr1	209001377	209016476	+	0	NA	Intergenic	Intergenic	-489875	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA	0.931	1.259	1.161	2.767	2.114	1.241	3.157	0.070	0.078	1.890	0.684	1.479	2.350	0.022	0.094	0.536	0.270	0.309	0.314	2.076	2.060	6.763	2.481	nan	nan	1.337	1.684	3.849	4.663	0.344	0.156	0.098	0.106	3.415	3.381	0.339	0.430	3.076	1.578	1.120	0.082	0.715	1.251	3.157	1.479		0.599	0.019	0.033
2664	chr14	70098540	70126417	+	0	NA	intron (NM_014734, intron 1 of 5)	AluSx|SINE|Alu	34168	NM_014734	9766	Hs.440025	NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding	1.623	1.844	1.987	1.963	2.050	1.226	1.170	0.511	0.156	1.279	0.689	2.034	2.242	0.117	0.114	0.397	0.471	0.335	0.617	1.567	1.738	2.972	0.968	0.730	0.848	1.017	1.489	3.215	nan	1.779	1.229	0.928	1.271	2.467	3.174	0.543	1.519	2.963	nan	1.423	1.421	0.804	0.407	1.170	2.034	0.201	0.537	1.399	0.256
8187	chr9	90006180	90025088	+	0	NA	Intergenic	Intergenic	-96509	NM_001288731	1612	Hs.380277	NM_004938	ENSG00000196730	DAPK1	DAPK	death associated protein kinase 1	protein-coding	0.523	nan	0.610	0.074	0.186	0.097	0.061	0.265	0.081	0.217	0.154	0.114	0.444	0.046	0.090	0.218	0.167	7.800	nan	0.263	0.265	0.235	0.076	0.713	0.806	0.071	0.143	0.129	0.173	0.147	0.075	0.269	0.336	0.082	0.075	0.085	0.150	1.082	0.697	0.009	0.037	0.030	0.008	0.061	0.114		0.048	0.146	0.039
5019	chr20	57605877	57617906	+	0	NA	intron (NR_037930, intron 1 of 5)	intron (NR_037930, intron 1 of 5)	-4469	NM_006886	514	Hs.177530	NM_006886	ENSG00000124172	ATP5E	ATPE|MC5DN3	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	protein-coding	2.434	2.490	1.733	2.011	1.434	0.990	0.994	1.166	0.134	1.098	0.647	1.671	3.804	3.535	0.179	3.415	nan	1.980	3.068	2.542	2.500	3.608	1.355	4.096	4.016	2.333	3.268	2.503	3.603	3.935	3.319	1.690	3.417	1.838	2.097	2.269	3.100	3.417	1.500	0.519	1.254	0.645	0.621	0.994	1.671	0.567	3.327	0.817	0.848
1121	chr10	62276694	62296164	+	0	NA	intron (NM_001204403, intron 2 of 43)	intron (NM_001204403, intron 2 of 43)	46285	NM_001204404	288	Hs.499725	NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding	0.574	nan	0.593	0.091	0.326	0.181	0.614	0.903	0.132	0.492	0.306	0.043	0.226	0.051	0.096	0.364	0.219	0.336	0.919	0.294	0.275	5.660	2.483	0.272	0.258	0.419	0.597	0.168	0.221	0.208	0.101	0.069	0.141	0.479	0.491	0.121	nan	0.474	0.528	0.020	0.087	0.029	0.077	0.614	0.043	0.015	0.016	0.025	0.039
8081	chr9	19481073	19495048	+	0	NA	Intergenic	Intergenic	79135	NM_001010887	340485	Hs.41379	NM_001010887	ENSG00000177076	ACER2	ALKCDase2|ASAH3L	alkaline ceramidase 2	protein-coding	nan	nan	1.322	0.315	0.237	0.138	0.265	0.076	0.093	0.338	0.199	0.094	0.768	0.056	0.080	0.116	0.148	0.180	0.365	0.475	0.536	0.964	0.196	0.074	0.048	1.512	2.065	0.439	0.337	0.957	0.824	0.113	0.189	0.631	0.395	0.354	0.826	3.915	2.110	0.377	0.076	0.048	0.111	0.265	0.094	0.070	0.087	0.028	0.160
4245	chr2	20248622	20253217	+	0	NA	intron (NM_014713, intron 1 of 6)	intron (NM_014713, intron 1 of 6)	870	NM_014713	9741	Hs.467807	NM_014713	ENSG00000068697	LAPTM4A	HUMORF13|LAPTM4|MBNT|Mtrp	lysosomal protein transmembrane 4 alpha	protein-coding	4.652	2.508	3.560	4.762	4.078	1.956	5.118	5.256	0.352	2.869	1.419	3.180	19.568	4.658	0.158	2.140	2.928	3.194	5.492	12.367	8.950	5.780	2.175	9.648	10.135	5.165	5.602	6.798	13.137	8.382	8.167	1.782	3.559	3.695	4.578	5.936	7.888	3.712	1.605	6.562	7.689	0.868	2.704	5.118	3.180	1.911	2.580	2.241	2.140
6493	chr5	146246180	146259250	+	0	NA	intron (NM_181678, intron 2 of 10)	L2c|LINE|L2	5633	NM_001271948	5521	Hs.627618	NM_181674	ENSG00000156475	PPP2R2B	B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12	protein phosphatase 2 regulatory subunit Bbeta	protein-coding	nan	1.141	0.756	0.146	0.453	0.258	0.265	0.063	0.050	0.107	0.049	0.542	1.922	0.074	0.097	0.310	0.136	0.344	0.424	0.657	0.608	1.123	0.269	0.036	0.055	3.264	3.947	0.368	0.457	0.680	0.687	0.127	0.177	0.212	0.227	0.274	0.636	0.950	0.592	0.483	0.744	0.094	0.080	0.265	0.542	0.311	0.341	0.031	0.160
896	chr1	226248030	226256464	+	0	NA	intron (NM_002107, intron 2 of 3)	intron (NM_002107, intron 2 of 3)	1819	NR_002315	440926	Hs.533624	NR_002315		H3F3AP4	p13	H3 histone, family 3A, pseudogene 4	pseudo	7.677	nan	8.158	8.028	7.683	4.142	4.634	3.343	0.344	4.667	1.718	6.809	10.016	4.808	0.193	8.765	8.226	11.614	15.019	13.221	nan	6.839	2.723	16.169	16.035	3.939	4.905	7.731	11.351	7.838	9.442	2.466	4.228	6.336	5.631	7.121	7.369	3.206	1.615	6.913	3.001	1.704	3.293	4.634	6.809	1.081	2.368	1.409	2.252
3530	chr17	71329644	71344423	+	0	NA	intron (NM_001144952, intron 44 of 44)	AluSp|SINE|Alu	-28890	NM_012121	23580	Hs.3903	NM_012121	ENSG00000179604	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein 4	protein-coding	2.321	1.078	2.787	0.905	0.999	0.454	1.724	0.462	0.185	2.332	0.584	0.349	2.133	0.184	0.100	0.974	1.617	0.434	0.937	2.171	2.113	1.052	0.475	0.800	0.876	nan	1.132	0.470	0.815	3.893	3.263	0.715	1.240	3.891	3.918	2.294	5.269	nan	0.573	0.437	0.482	1.479	2.854	1.724	0.349	0.499	0.303	0.709	1.683
5539	chr3	129294239	129298439	+	0	NA	intron (NM_015103, intron 9 of 35)	intron (NM_015103, intron 9 of 35)	29111	NM_001308262	132243	Hs.97358	NM_153833	ENSG00000178804	H1FOO	H1.8|H1oo|osH1	H1 histone family member O, oocyte specific	protein-coding	2.982	nan	4.079	3.326	1.552	0.840	0.185	0.509	0.076	2.137	1.061	3.224	0.496	0.233	0.071	0.645	1.028	0.227	0.412	4.151	4.033	3.804	1.540	0.570	0.651	1.256	nan	10.314	9.636	1.879	2.473	0.691	0.336	1.194	1.517	2.102	3.538	2.096	1.249	0.105	0.439	0.499	0.646	0.185	3.224	3.978	4.671	0.118	2.066
3672	chr18	13538089	13543768	+	0	NA	intron (NM_181481, intron 3 of 5)	intron (NM_181481, intron 3 of 5)	-70185	NR_039752	100616130		NR_039752	ENSG00000263527	MIR4526	mir-4526	microRNA 4526	ncRNA	1.050	0.981	0.747	0.401	9.465	4.920	0.182	0.222	0.084	1.327	0.298	5.359	2.772	0.057	0.101	0.552	0.501	0.768	0.650	1.178	1.261	0.490	0.191	0.320	0.352	0.060	0.110	2.094	2.085	0.534	0.302	0.325	0.455	0.808	0.647	0.354	0.730	1.736	1.261	3.085	0.634	0.281	0.070	0.182	5.359	0.034	3.503	0.070	0.802
8143	chr9	66486416	66495781	+	0	NA	non-coding (NR_135128, exon 1 of 1)	non-coding (NR_135128, exon 1 of 1)	3072	NR_135128	100132249	Hs.536982	NR_135128		LOC100132249	-	uncharacterized LOC100132249	ncRNA	2.885	7.017	5.543	4.684	3.330	1.816	4.148	0.192	0.167	3.919	2.679	4.470	8.366	2.268	0.286	4.211	6.325	1.890	2.600	7.911	6.681	9.799	6.835	4.291	4.397	6.037	6.834	2.839	3.862	5.057	6.561	4.126	7.467	6.791	4.812	3.779	5.051	5.875	3.687	3.415	2.471	2.112	2.683	4.148	4.470	1.274	4.105	3.683	1.852
6470	chr5	139111001	139145996	+	0	NA	Intergenic	Intergenic	-2690	NR_105053	101929696	Hs.147408	NR_105052	ENSG00000249131	PSD2-AS1	-	PSD2 antisense RNA 1	ncRNA	3.158	1.044	nan	0.209	0.543	0.294	1.088	0.208	0.120	0.179	0.137	0.376	1.364	0.198	0.106	1.505	2.439	0.555	0.947	1.113	0.969	0.616	0.166	1.565	1.753	1.569	2.033	0.804	0.974	3.282	3.454	1.493	2.379	0.761	0.610	1.262	2.874	0.613	0.447	0.412	0.315	0.204	0.111	1.088	0.376	0.965	0.327	1.360	0.584
4310	chr2	44160694	44176630	+	0	NA	intron (NM_133259, intron 23 of 37)	intron (NM_133259, intron 23 of 37)	54482	NM_133259	10128	Hs.368084	NM_133259	ENSG00000138095	LRPPRC	CLONE-23970|GP130|LRP130|LSFC	leucine rich pentatricopeptide repeat containing	protein-coding	1.117	nan	0.977	0.222	0.440	0.260	0.233	0.329	0.081	0.373	0.336	0.668	1.198	0.204	0.119	0.582	0.495	5.011	3.718	nan	1.502	6.430	2.879	0.692	0.638	0.802	1.057	0.545	0.648	1.105	0.609	0.413	0.792	0.338	0.344	0.890	nan	nan	0.515	0.070	0.586	0.036	0.196	0.233	0.668	0.085	0.090	0.367	0.355
5045	chr20	61869953	61878797	+	0	NA	intron (NM_152864, intron 5 of 6)	intron (NM_152864, intron 5 of 6)	4244	NR_036163	100423014		NR_036163	ENSG00000266463	MIR3196	mir-3196	microRNA 3196	ncRNA	0.704	1.387	1.069	1.231	0.410	0.150	0.141	0.113	0.054	0.075	0.049	0.202	1.030	0.098	0.073	0.674	nan	0.108	0.108	1.003	0.755	1.271	0.283	0.533	0.710	0.134	0.279	0.388	0.248	0.655	0.428	0.358	0.493	0.120	0.167	0.168	0.208	1.196	0.733	7.413	0.287	0.043	0.045	0.141	0.202	0.055	0.497	0.044	0.014
3609	chr17	79033410	79059353	+	0	NA	intron (NM_017451, intron 3 of 14)	intron (NM_017451, intron 3 of 14)	37434	NM_006340	10458	Hs.128316	NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53	BAI1 associated protein 2	protein-coding	1.155	1.187	4.562	0.719	0.424	0.177	1.098	0.100	0.061	0.248	0.149	0.157	0.866	0.113	0.084	0.887	1.335	0.304	0.506	0.929	0.860	0.611	0.295	0.220	0.235	nan	0.638	0.345	0.777	2.475	2.160	0.385	0.485	0.560	0.599	1.284	2.987	nan	0.516	0.121	0.640	0.179	0.170	1.098	0.157	0.226	0.089	0.063	1.077
2786	chr14	104685290	104696957	+	0	NA	Intergenic	Intergenic	86063	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding	1.474	1.053	0.775	0.338	0.125	0.083	0.197	0.065	0.027	0.337	0.133	6.130	4.820	0.074	0.105	2.488	3.542	0.591	0.424	4.513	3.577	0.197	0.111	0.036	0.060	3.472	4.030	8.582	9.958	1.502	1.319	1.443	1.966	0.843	1.083	1.624	3.386	2.253	1.382	7.661	1.527	0.247	0.055	0.197	6.130	0.300	3.795	0.879	1.716
1672	chr11	116368259	116390282	+	0	NA	Intergenic	Intergenic	-130869	NR_135069	101929011	Hs.733911	NR_135069	ENSG00000237937	LOC101929011	-	uncharacterized LOC101929011	ncRNA	1.177	1.290	0.721	0.235	0.367	0.245	1.211	0.024	0.090	1.145	0.879	0.527	2.221	0.064	0.110	0.382	nan	0.144	0.196	0.563	0.635	1.915	0.458	0.097	0.135	3.013	nan	1.403	1.233	3.367	2.873	0.421	0.635	2.184	1.710	1.028	3.441	3.793	1.848	0.417	0.247	0.681	0.129	1.211	0.527	0.438	0.852	0.121	2.499
2325	chr13	66922046	66949252	+	0	NA	intron (NM_001318372, intron 4 of 4)	intron (NM_001318372, intron 4 of 4)	143267	NR_039853	100616205		NR_039853	ENSG00000263561	MIR4704	-	microRNA 4704	ncRNA	nan	1.170	nan	0.086	0.176	0.112	0.345	0.162	0.024	0.156	0.182	0.265	0.678	0.024	0.096	0.487	0.375	0.119	0.138	0.385	0.478	1.208	0.456	0.121	0.147	0.175	0.234	0.338	0.343	0.425	0.193	0.131	0.267	2.145	2.620	0.411	0.812	0.254	0.168	0.020	0.058	0.449	0.097	0.345	0.265	0.025	0.099	0.069	0.087
6225	chr5	32779729	32792496	+	0	NA	intron (NM_000908, intron 7 of 7)	intron (NM_000908, intron 7 of 7)	74674	NM_001204375	4883	Hs.13528	NM_000908	ENSG00000113389	NPR3	ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC	natriuretic peptide receptor 3	protein-coding	0.438	0.804	nan	0.150	0.163	0.054	0.110	3.016	0.494	0.211	0.181	0.150	0.301	0.026	0.123	0.271	0.269	2.196	7.934	0.213	0.422	0.103	0.090	0.103	0.083	0.227	0.411	0.200	0.212	0.424	0.142	0.124	0.241	0.049	0.076	0.096	0.126	0.190	0.418	0.022	0.042	0.015	0.024	0.110	0.150	0.008	0.071	0.039	0.019
4924	chr20	32042275	32088954	+	0	NA	Intergenic	Intergenic	-12314	NM_001032999	9139	Hs.153934	NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 translocation partner 2	protein-coding	1.624	2.712	2.901	2.708	3.346	1.693	0.453	0.368	0.240	0.877	0.530	4.902	3.463	0.296	0.122	2.377	3.885	0.620	0.876	2.518	nan	4.816	1.650	1.660	1.706	1.351	2.039	3.601	3.562	2.495	1.987	1.165	1.459	1.520	2.158	1.203	nan	1.294	0.718	0.960	1.262	0.519	1.251	0.453	4.902	0.377	0.501	0.691	0.663
3941	chr19	3499441	3507961	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2594	NM_016263	51343	Hs.413133	NM_016263	ENSG00000105325	FZR1	CDC20C|CDH1|FZR|FZR2|HCDH|HCDH1	fizzy/cell division cycle 20 related 1	protein-coding	3.362	3.455	5.032	4.524	4.965	2.332	3.471	1.517	0.281	2.073	0.906	5.594	9.922	2.338	0.198	5.039	4.662	4.949	6.965	8.131	8.361	6.224	4.728	10.415	11.310	3.675	4.594	5.823	nan	6.067	5.463	2.637	3.790	4.964	6.346	3.818	3.257	4.253	2.079	4.665	5.159	1.357	1.098	3.471	5.594	1.313	3.127	0.915	0.812
2768	chr14	100929728	100971360	+	0	NA	intron (NM_024515, intron 4 of 6)	intron (NM_024515, intron 4 of 6)	83863	NM_001159531	57596	Hs.211751	NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding	1.683	2.263	1.137	0.472	2.677	1.310	5.629	0.477	0.131	0.629	0.353	1.091	7.169	0.068	0.107	0.331	0.295	0.217	0.599	2.513	2.671	2.786	0.615	0.110	0.094	0.868	1.320	4.353	3.726	1.172	1.021	0.273	0.464	1.493	2.116	0.356	0.502	3.187	1.643	5.236	1.711	0.321	1.847	5.629	1.091	1.110	1.495	0.224	0.107
562	chr1	154809438	154842870	+	0	NA	intron (NM_002249, intron 1 of 7)	AluSz|SINE|Alu	6184	NM_170782	3782	Hs.490765	NM_002249	ENSG00000143603	KCNN3	KCa2.3|SK3|SKCA3|hSK3	potassium calcium-activated channel subfamily N member 3	protein-coding	nan	nan	3.088	0.119	0.412	0.178	1.178	0.089	0.119	0.434	0.206	0.150	1.521	0.074	0.121	3.375	5.005	2.336	1.651	1.242	nan	1.218	0.370	0.603	0.624	0.859	1.497	0.961	1.024	1.413	1.333	3.183	4.160	0.367	0.347	0.322	0.660	1.061	0.668	0.477	1.714	0.048	0.199	1.178	0.150	0.354	0.326	2.620	0.046
2269	chr13	36337454	36345844	+	0	NA	Intergenic	Intergenic	69785	NR_132115	100507114	Hs.236298	NR_132115	ENSG00000236036	LINC00445	-	long intergenic non-protein coding RNA 445	ncRNA	2.076	1.263	2.266	0.084	0.087	0.171	0.277	0.134	0.091	0.130	0.126	0.142	0.386	0.026	0.073	0.643	0.581	0.190	0.273	0.558	0.699	0.620	0.240	0.169	0.149	3.579	3.859	0.285	0.273	2.459	3.560	0.282	0.416	1.330	1.041	3.359	12.679	0.541	0.363	0.132	0.170	0.442	0.974	0.277	0.142	0.684	0.375	0.058	3.676
1102	chr10	39076530	39082780	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	89928	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo	4.320	5.604	4.404	0.371	1.703	1.049	1.313	1.008	4.668	0.500	1.759	0.478	1.601	0.229	1.224	2.195	0.921	0.847	nan	1.832	2.814	0.663	0.481	0.885	0.822	1.688	2.557	1.164	1.145	2.623	0.533	0.789	1.229	0.851	1.433	1.005	1.697	0.582	1.248	0.090	0.557	0.457	0.282	1.313	0.478	0.124	0.193	0.141	0.258
7027	chr6	147473045	147484490	+	0	NA	intron (NR_034115, intron 3 of 10)	intron (NR_034115, intron 3 of 10)	-1294	NR_132442	106182249	Hs.575390	NR_132442	ENSG00000196634	LUADT1	-	lung adenocarcinoma associated transcript 1	ncRNA	nan	1.639	nan	1.298	1.454	0.727	1.117	0.111	0.163	0.909	0.283	0.805	0.799	0.019	0.121	0.416	0.291	0.169	0.337	0.429	0.531	4.592	2.096	0.255	0.294	0.199	0.336	0.638	0.491	0.595	0.282	0.315	0.393	1.588	2.644	0.222	0.405	4.924	2.371	0.034	0.346	0.342	0.077	1.117	0.805		1.931	0.104	0.205
6481	chr5	142429394	142447959	+	0	NA	intron (NM_015071, intron 17 of 22)	intron (NM_015071, intron 17 of 22)	-133389	NR_046816	100874372	Hs.666717	NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA	nan	0.964	0.743	0.342	0.892	0.415	0.299	1.253	0.208	0.153	0.159	0.667	3.115	0.058	0.110	0.228	0.211	0.327	0.830	0.452	0.553	0.342	0.162	0.454	0.429	1.213	1.570	2.931	1.891	0.511	0.409	0.280	0.588	0.568	0.432	0.248	0.980	1.015	0.696	0.277	3.046	0.123	0.166	0.299	0.667	0.287	0.552	0.522	0.238
1478	chr11	66484870	66497133	+	0	NA	Intergenic	Intergenic	-2131	NM_006946	6712	Hs.26915	NM_006946	ENSG00000173898	SPTBN2	GTRAP41|SCA5|SCAR14	spectrin beta, non-erythrocytic 2	protein-coding	nan	2.406	2.533	2.114	2.240	1.176	2.161	0.251	0.117	1.637	0.756	6.083	2.666	0.618	0.081	2.120	2.769	0.999	1.662	8.526	8.910	3.703	1.136	2.257	2.185	0.883	1.769	5.623	7.043	2.146	2.571	1.175	2.222	2.218	1.932	1.306	1.441	2.056	1.247	1.446	2.531	0.537	4.352	2.161	6.083	0.476	1.290	0.764	0.332
2541	chr14	33691142	33721614	+	0	NA	intron (NM_173159, intron 3 of 11)	intron (NM_173159, intron 3 of 11)	297919	NM_173159	64067	Hs.657892	NM_022123	ENSG00000151322	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding	1.213	0.735	0.910	0.140	0.229	0.115	0.177	0.162	0.127	0.072	0.107	0.172	0.367	2.831	0.131	0.211	0.166	0.154	0.324	0.312	0.415	0.135	0.075	0.205	0.202	0.189	0.260	0.312	0.323	0.550	0.274	0.145	0.244	0.060	0.098	0.328	0.581	0.439	0.474	0.036	0.120	0.015	0.122	0.177	0.172	0.019	0.060	0.029	0.086
439	chr1	109355817	109360161	+	0	NA	TTS (NM_152763)	TTS (NM_152763)	41737	NM_152763	254268	Hs.729441	NM_152763	ENSG00000162641	AKNAD1	C1orf62	AKNA domain containing 1	protein-coding	5.331	4.525	3.060	1.753	0.445	0.404	2.569	6.317	0.467	0.322	0.147	3.632	0.648	0.125	0.073	0.752	1.022	0.450	0.998	1.333	nan	9.800	9.842	0.324	0.368	6.109	6.635	nan	nan	2.719	2.412	0.272	0.620	7.193	6.850	1.488	3.303	1.417	0.862	1.637	2.207	0.792	0.385	2.569	3.632	0.771	1.054	0.361	0.412
5846	chr4	22264435	22271565	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	73289	NR_037877	100505912	Hs.270471	NR_037877		LOC100505912	-	uncharacterized LOC100505912	ncRNA	0.643	0.486	nan	0.150	0.138	0.045	0.232	0.094	0.045	0.198	0.201	0.017	10.832	0.045	0.055	0.457	0.128	0.230	0.357	1.034	0.955	1.995	0.262	0.288	0.399	0.140	0.219	0.257	0.186	0.349	0.164	0.044	0.162	0.831	1.006	0.158	0.118	nan	0.772	0.109	0.388	0.027	0.246	0.232	0.017	0.054	0.043	0.027	0.016
2607	chr14	57072403	57080591	+	0	NA	intron (NM_017799, intron 6 of 15)	intron (NM_017799, intron 6 of 15)	29986	NM_017799	54916	Hs.497253	NM_017799	ENSG00000070269	TMEM260	C14orf101	transmembrane protein 260	protein-coding	nan	nan	1.845	1.700	4.284	2.524	0.395	0.184	0.098	0.406	0.223	1.026	0.707	0.199	0.113	0.945	0.636	0.336	0.399	0.627	0.615	0.760	0.457	16.429	17.394	0.393	0.590	2.498	0.579	1.344	0.830	2.371	1.900	0.360	1.106	1.605	9.416	nan	0.479	1.344	1.706	0.102	1.116	0.395	1.026	0.071	0.117	0.606	1.151
3345	chr17	27884344	27896645	+	0	NA	intron (NM_198147, intron 1 of 1)	AluJb|SINE|Alu	3548	NM_198147	116236	Hs.106510	NM_198147	ENSG00000168792	ABHD15	-	abhydrolase domain containing 15	protein-coding	nan	nan	nan	0.509	1.995	1.234	0.672	0.514	0.211	0.294	0.178	1.243	1.840	2.593	0.194	0.837	1.440	1.214	1.652	1.385	0.933	2.272	0.786	1.586	1.746	1.190	1.912	1.716	2.076	6.046	6.034	1.163	2.497	0.970	0.782	2.257	nan	0.576	0.567	0.937	0.252	0.318	0.716	0.672	1.243	0.512	0.840	0.845	4.141
4839	chr20	7682008	7687021	+	0	NA	Intergenic	Intergenic	236579	NM_017545	54363	Hs.193640	NM_017545	ENSG00000101323	HAO1	GOX|GOX1|HAOX1	hydroxyacid oxidase 1	protein-coding	0.751	4.050	0.615	2.985	0.983	0.415	1.338	0.015	0.129	2.408	0.735	4.239	1.470	0.044	0.044	2.499	2.331	0.171	0.312	4.625	4.892	14.261	6.921	0.239	0.077	0.404	0.562	7.779	4.175	1.015	0.591	0.280	0.685	4.035	5.169	0.271	0.427	4.012	1.935	2.507	0.452	0.664	0.080	1.338	4.239	0.040	6.360	0.059	0.150
4374	chr2	58030952	58040024	+	0	NA	Intergenic	Intergenic	-99298	NM_001288837	7444	Hs.715298	NM_006296	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding	0.721	nan	0.635	0.106	0.288	0.174	0.098	0.124	0.128	0.157	0.207	0.146	0.289	0.036	0.102	1.283	0.876	6.790	6.376	0.340	0.480	0.459	0.193	0.203	0.183	0.623	0.686	0.384	0.364	0.528	0.168	0.409	0.875	0.092	0.105	0.307	0.411	0.447	0.353	0.019	0.168	0.062	0.018	0.098	0.146	0.054	0.045	0.283	0.060
18	chr1	1435956	1449496	+	0	NA	Intergenic	L1M3|LINE|L1	-4797	NM_018188	55210	Hs.23413	NM_018188	ENSG00000197785	ATAD3A	HAYOS	ATPase family, AAA domain containing 3A	protein-coding	2.543	nan	3.047	3.220	1.485	0.721	0.502	0.791	0.179	1.210	0.377	0.866	2.476	0.948	0.134	2.570	2.968	2.675	3.866	3.191	3.022	2.756	1.310	8.105	8.395	1.648	nan	nan	12.153	nan	2.052	1.610	2.530	1.227	1.224	3.157	3.338	1.777	1.183	1.361	1.657	0.134	0.251	0.502	0.866	1.119	1.144	0.939	0.877
376	chr1	78440890	78451244	+	0	NA	intron (NM_001317099, intron 1 of 3)	intron (NM_001317099, intron 1 of 3)	199	NM_001317099	11080	Hs.13852	NM_007034	ENSG00000162616	DNAJB4	DNAJW|DjB4|HLJ1	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	nan	2.744	4.559	2.944	3.296	2.036	3.002	1.800	0.389	1.259	0.596	2.505	5.847	2.886	0.121	5.105	4.447	5.979	7.521	6.857	nan	5.545	3.714	12.098	12.835	4.710	nan	8.147	11.249	5.201	5.546	3.521	5.998	3.162	3.693	9.148	9.736	2.810	1.686	2.049	1.974	0.348	1.723	3.002	2.505	0.789	0.893	1.757	2.950
6598	chr6	6809963	6838389	+	0	NA	Intergenic	Intergenic	-201117	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA	1.053	2.494	1.089	2.336	0.667	0.374	1.971	0.123	0.160	0.848	0.229	5.207	2.106	0.061	0.114	0.570	0.890	0.539	0.889	2.599	2.025	3.029	1.395	0.595	0.684	0.216	0.417	2.745	3.071	0.575	0.392	0.259	0.421	0.688	1.304	0.291	0.528	2.138	1.291	1.277	1.504	0.105	0.152	1.971	5.207	0.352	1.290	0.084	0.117
5826	chr4	4480748	4487013	+	0	NA	promoter-TSS (NR_126434)	promoter-TSS (NR_126434)	-453	NR_126434	104472519	Hs.691848	NR_126434	ENSG00000248221	STX18-IT1	-	STX18 intronic transcript 1	ncRNA	0.863	0.403	nan	0.126	0.145	0.025	0.384	0.106	0.025	0.075	0.171	0.230	0.320	0.070	0.083	7.677	7.179	8.237	6.279	0.792	0.966	nan	0.194	0.969	1.147	0.792	1.138	0.371	0.527	0.627	0.399	2.067	2.884	0.264	0.290	0.450	0.772	nan	0.759		0.062	0.061	0.659	0.384	0.230	0.031	0.033	1.517	0.196
609	chr1	159905919	159917453	+	0	NA	intron (NM_001135050, intron 3 of 20)	intron (NM_001135050, intron 3 of 20)	3700	NM_020789	57549	Hs.591472	NM_020789	ENSG00000085552	IGSF9	FP18798|IGSF9A|Nrt1	immunoglobulin superfamily member 9	protein-coding	nan	nan	2.481	1.203	7.765	4.250	1.811	0.137	0.178	0.587	0.706	3.474	11.057	0.329	0.076	1.742	2.140	1.821	2.713	10.119	nan	0.976	0.282	1.335	1.359	1.247	1.762	4.074	5.365	0.839	0.932	1.730	3.339	5.869	6.283	2.034	5.746	1.579	1.023	7.914	1.060	2.811	0.361	1.811	3.474	1.031	0.096	1.291	0.699
5615	chr3	156188786	156202902	+	0	NA	intron (NM_172159, intron 8 of 13)	intron (NM_172159, intron 8 of 13)	-31119	NR_046618	100874084	Hs.131282	NR_046618	ENSG00000242370	KCNAB1-AS1	-	KCNAB1 antisense RNA 1	ncRNA	nan	1.018	1.989	0.116	0.269	0.233	0.253	0.358	0.068	0.305	0.189	0.076	0.497	0.023	0.099	0.394	0.285	0.261	0.264	0.428	0.504	0.316	0.175	0.298	0.263	2.981	nan	0.348	0.416	1.619	1.240	0.112	0.216	0.116	0.173	0.571	0.993	0.652	0.506	0.960	0.082	0.061	0.067	0.253	0.076	0.558	0.208	0.057	0.537
7623	chr8	27471429	27511161	+	0	NA	promoter-TSS (NM_016240)	promoter-TSS (NM_016240)	-282	NM_182826	51435	Hs.128856	NM_016240	ENSG00000168077	SCARA3	APC7|CSR|CSR1|MSLR1|MSRL1	scavenger receptor class A member 3	protein-coding	nan	0.977	nan	0.112	0.194	0.089	0.522	0.087	0.077	0.039	0.090	0.069	0.217	0.415	0.103	0.396	0.402	0.223	0.341	nan	0.527	nan	0.397	0.172	0.195	0.289	0.477	0.224	0.261	1.155	0.686	0.231	0.279	0.200	0.521	1.321	3.925	nan	nan	0.035	0.059	0.032	0.024	0.522	0.069	0.073	0.125	0.039	2.771
7105	chr6	169440897	169455695	+	0	NA	Intergenic	Intergenic	-12558	NR_134622	101929460	Hs.355225	NR_134622	ENSG00000229720	LOC101929460	-	uncharacterized LOC101929460	ncRNA	0.499	nan	0.845	2.879	0.996	0.542	0.322	0.060	0.065	0.189	0.159	0.437	1.190	0.087	0.108	0.385	0.192	0.211	0.326	0.623	0.825	10.920	3.005	0.102	0.163	0.118	0.189	1.798	1.509	nan	0.143	0.138	0.201	0.138	0.095	0.104	0.180	1.826	0.752	0.023	0.030	0.007	0.220	0.322	0.437	0.026	0.027	0.016	0.041
4790	chr2	241518446	241527317	+	0	NA	non-coding (NR_103792, exon 1 of 1)	non-coding (NR_103792, exon 1 of 1)	2852	NR_103792	101752400	Hs.585987	NR_103792	ENSG00000260942	CAPN10-AS1	locus959	CAPN10 antisense RNA 1 (head to head)	ncRNA	2.544	nan	4.579	1.778	1.931	1.109	1.315	0.465	0.018	0.948	0.317	1.670	3.909	1.413	0.127	2.763	2.921	1.926	3.059	2.251	2.309	1.905	0.653	2.768	3.048	1.451	2.285	2.437	3.383	6.624	8.635	1.281	2.400	1.189	1.172	2.864	4.682	0.982	0.529	1.356	1.086	0.235	0.523	1.315	1.670	0.470	1.146	0.564	1.611
6717	chr6	33675348	33690797	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-3544	NM_032340	84300	Hs.732448	NM_032340	ENSG00000137288	UQCC2	C6orf125|Cbp6|M19|MNF1|bA6B20.2	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	nan	2.538	nan	1.715	1.496	0.823	1.542	0.659	0.125	0.669	0.427	2.025	2.744	0.754	0.107	1.723	1.732	5.080	nan	nan	2.634	3.281	1.499	2.852	3.051	1.762	2.014	6.192	6.971	3.423	2.767	1.333	1.803	1.638	2.206	3.119	4.626	1.666	1.139	3.748	2.335	0.296	0.722	1.542	2.025	0.450	1.928	0.429	1.687
3652	chr18	6994592	7007280	+	0	NA	intron (NM_005559, intron 30 of 62)	intron (NM_005559, intron 30 of 62)	46260	NR_126040	101927188	Hs.680444	NR_126040	ENSG00000265069	LOC101927188	-	uncharacterized LOC101927188	ncRNA	0.758	0.851	1.022	0.062	0.179	0.072	0.100	0.106	0.038	0.333	0.308	0.057	nan	0.043	0.127	0.300	0.131	0.238	0.487	0.762	0.829	nan	0.181	0.362	0.321	0.112	nan	0.751	0.920	nan	0.135	0.150	0.237	1.807	1.599	0.192	nan	nan	1.872	0.066	0.063	0.219	0.025	0.100	0.057	0.061	0.027	0.039	0.120
3373	chr17	35833262	35852770	+	0	NA	Intergenic	Intergenic	-6935	NM_007026	11072	Hs.91448	NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding	nan	1.787	1.148	0.328	1.371	0.693	1.024	1.473	0.205	0.763	0.407	0.884	1.583	0.509	0.081	1.973	2.506	1.409	3.515	nan	1.279	2.024	0.701	1.517	1.486	1.275	1.719	1.334	2.412	nan	3.657	0.803	1.751	1.072	0.980	1.215	2.687	0.944	0.694	0.570	1.467	0.348	1.174	1.024	0.884	0.360	0.676	1.051	0.531
148	chr1	26053714	26102967	+	0	NA	intron (NM_020379, intron 4 of 11)	intron (NM_020379, intron 4 of 11)	-48327	NM_020451	57190	Hs.323396	NM_020451	ENSG00000162430	SELENON	CFTD|MDRS1|RSMD1|RSS|SELN|SEPN1	selenoprotein N	protein-coding	2.335	1.483	nan	0.390	0.597	0.313	1.035	0.659	0.100	0.800	0.417	0.100	1.697	0.062	0.101	0.413	0.579	0.340	0.699	1.227	1.319	1.134	0.339	0.411	0.423	2.174	2.924	0.574	0.889	1.452	1.417	0.482	0.533	1.052	1.033	0.660	1.481	2.138	1.065	4.521	1.272	0.286	0.048	1.035	0.100	0.909	1.329	0.249	0.442
6453	chr5	133838598	133881385	+	0	NA	promoter-TSS (NM_001308143)	promoter-TSS (NM_001308143)	-75	NM_001308143	23338	Hs.732155	NM_015288	ENSG00000043143	JADE2	JADE-2|PHF15	jade family PHD finger 2	protein-coding	1.620	1.211	nan	0.571	1.355	0.686	0.350	1.035	0.208	0.252	0.151	0.543	3.275	1.809	0.133	0.447	0.820	0.972	1.494	1.086	1.009	1.575	0.405	0.672	0.764	0.807	1.210	4.389	4.068	1.991	2.124	0.878	1.197	0.752	0.678	1.139	3.243	0.936	0.547	0.810	2.141	0.132	0.222	0.350	0.543	0.261	0.897	0.756	1.287
6067	chr4	166791819	166804221	+	0	NA	intron (NM_012464, intron 1 of 20)	intron (NM_012464, intron 1 of 20)	3610	NM_001204760	7092	Hs.106513	NM_012464	ENSG00000038295	TLL1	ASD6|TLL	tolloid like 1	protein-coding	nan	nan	nan	0.127	0.522	0.311	0.135	0.734	0.051	1.205	1.034	0.130	1.114	0.035	0.079	0.219	0.195	5.546	7.440	0.101	0.173	4.117	1.822	0.519	0.424	0.361	0.520	0.297	0.366	0.511	0.170	0.102	0.265	2.567	1.703	0.307	0.528	1.037	0.620	0.054	0.050	0.390	0.052	0.135	0.130	0.072	0.025	0.063	0.083
7709	chr8	62398428	62410521	+	0	NA	intron (NM_173519, intron 5 of 5)	intron (NM_173519, intron 5 of 5)	197934	NM_001164752	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding	1.787	0.770	0.877	0.081	0.275	0.119	0.159	0.056	0.038	0.078	0.109	0.099	0.307	0.036	0.079	0.247	0.130	0.101	0.181	0.499	0.589	0.521	0.115	0.054	0.045	3.910	nan	0.202	0.160	nan	0.315	0.200	0.252	0.484	0.518	0.437	0.898	0.693	0.682	0.051	0.074	0.356	0.098	0.159	0.099	2.721	0.135	0.082	0.128
1343	chr11	20859403	20868543	+	0	NA	intron (NM_001288714, intron 3 of 18)	intron (NM_001288714, intron 3 of 18)	172876	NM_001288714	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding	0.965	1.168	3.760	3.061	0.275	0.168	0.352	0.049	0.071	1.534	0.661	1.091	2.272	0.023	0.081	0.512	0.565	0.239	0.337	0.881	0.962	6.453	2.278	0.168	0.157	0.578	0.677	4.963	4.605	1.750	1.438	0.105	0.339	4.960	6.888	0.356	1.376	2.752	1.453	0.139	0.978	1.388	0.504	0.352	1.091	0.021	0.709	0.064	0.527
8383	chrX	44731075	44734809	+	0	NA	exon (NM_021140, exon 1 of 29)	exon (NM_021140, exon 1 of 29)	521	NM_021140	7403	Hs.522616	NM_021140	ENSG00000147050	KDM6A	KABUK2|UTX|bA386N14.2	lysine demethylase 6A	protein-coding	7.119	7.047	nan	5.839	4.062	1.839	3.164	3.970	0.299	4.396	1.852	4.228	11.793	3.098	0.046	2.123	2.443	11.608	15.884	9.802	8.691	7.053	3.885	25.446	25.391	4.392	5.551	6.315	12.144	12.911	12.938	2.895	7.916	5.868	5.228	9.431	6.790	2.504	1.412	2.488	4.178	1.454	5.122	3.164	4.228	1.248	2.218	1.401	2.418
7234	chr7	29644941	29666910	+	0	NA	Intergenic	L2a|LINE|L2	50776	NM_001329997	222171	Hs.91109	NM_175887	ENSG00000176532	PRR15	-	proline rich 15	protein-coding	1.438	1.303	1.575	0.381	0.604	0.249	0.417	0.154	0.103	0.543	0.215	0.470	0.470	0.079	0.118	0.628	0.628	0.248	nan	0.381	0.453	4.904	1.994	0.907	1.019	0.241	0.528	0.531	0.575	0.314	0.156	0.467	0.369	0.477	0.715	0.898	nan	1.428	0.769	0.049	0.174	0.030	0.112	0.417	0.470	0.053	0.558	0.134	0.875
2655	chr14	66289137	66320280	+	0	NA	Intergenic	Intergenic	366888	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA	nan	nan	1.076	0.401	0.862	0.351	0.753	0.132	0.113	0.166	0.183	0.504	1.114	0.059	0.093	0.353	0.256	0.227	0.343	1.453	1.558	1.169	0.395	nan	0.395	0.491	0.856	0.701	nan	0.805	0.336	0.168	0.212	0.617	0.478	0.233	0.549	4.022	2.049	0.837	0.779	0.143	0.359	0.753	0.504	0.125	0.052	0.038	0.141
726	chr1	185406816	185424449	+	0	NA	Intergenic	Intergenic	-111461	NR_038424	100288079	Hs.131220	NR_038424	ENSG00000261024	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo	nan	nan	0.923	0.196	0.263	0.164	0.504	0.262	0.175	0.188	0.217	0.115	0.381	0.437	0.096	0.695	0.560	2.000	7.372	0.501	nan	0.454	0.144	nan	0.533	0.583	0.731	0.353	0.344	0.402	0.177	0.437	0.686	0.125	0.152	0.305	nan	0.555	0.576	0.044	0.152	0.005	0.288	0.504	0.115	0.187	0.029	0.118	0.097
7722	chr8	65485282	65498183	+	0	NA	Intergenic	Intergenic	-1063	NM_152414	27319	Hs.388788	NM_152414	ENSG00000180828	BHLHE22	BHLHB5|Beta3|Beta3a|CAGL85|TNRC20	basic helix-loop-helix family member e22	protein-coding	5.619	0.601	0.743	0.395	1.636	0.747	1.021	0.093	0.050	0.267	0.296	1.420	2.103	0.026	0.066	0.339	0.128	0.382	0.586	4.573	3.291	6.783	3.358	0.218	0.214	4.644	nan	0.177	0.144	nan	2.486	0.129	0.216	5.579	4.059	0.463	0.631	2.487	1.477	0.026	0.055	2.346	1.785	1.021	1.420	0.135	0.191	0.008	0.083
6241	chr5	39144851	39159187	+	0	NA	intron (NM_001465, intron 3 of 18)	intron (NM_001465, intron 3 of 18)	67661	NM_199335	2533	Hs.370503	NM_001465	ENSG00000082074	FYB	ADAP|PRO0823|SLAP-130|SLAP130	FYN binding protein	protein-coding	0.623	1.037	nan	0.246	0.197	0.101	0.125	0.255	0.152	0.154	0.167	0.042	0.332	0.038	0.130	1.080	0.390	2.340	0.572	0.280	0.346	0.156	0.085	8.508	9.098	0.342	0.534	0.320	0.296	0.422	0.124	0.401	0.694	0.096	0.092	0.182	0.358	0.213	0.428	0.005	0.082	0.013	0.032	0.125	0.042	0.007	0.091	0.088	0.078
2703	chr14	79061817	79114924	+	0	NA	intron (NM_004796, intron 1 of 16)	intron (NM_004796, intron 1 of 16)	218296	NM_004796	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding	nan	0.813	0.718	0.059	0.452	0.256	1.095	0.091	0.126	0.112	0.125	0.210	2.121	0.076	0.142	0.331	0.266	0.124	0.152	0.717	0.856	0.977	0.360	0.177	0.225	0.418	0.648	0.465	0.477	0.589	0.270	0.136	0.146	0.660	0.730	0.193	0.333	3.330	1.955	1.532	1.041	0.136	0.238	1.095	0.210	0.034	0.029	0.041	0.053
6659	chr6	21497066	21543209	+	0	NA	Intergenic	Intergenic	-8014	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA	1.158	1.057	nan	1.034	1.547	0.807	0.533	0.230	0.153	0.886	0.766	1.620	nan	0.068	0.090	1.116	0.732	4.706	nan	3.283	2.995	nan	0.427	10.348	10.772	0.438	0.644	1.748	1.388	0.563	0.312	1.884	3.680	1.508	1.069	0.375	0.974	2.304	1.282	4.304	0.331	0.376	0.126	0.533	1.620	0.175	0.292	2.036	0.188
4110	chr19	47512980	47541761	+	0	NA	intron (NM_002517, intron 3 of 11)	AluSx3|SINE|Alu	4269	NM_002517	4861	Hs.79564	NM_002517	ENSG00000130751	NPAS1	MOP5|PASD5|bHLHe11	neuronal PAS domain protein 1	protein-coding	1.091	0.911	1.035	0.353	0.474	0.246	0.329	0.143	0.141	0.099	0.143	0.324	0.753	0.408	0.126	0.335	0.388	0.409	0.669	0.720	0.757	1.271	0.302	0.742	0.800	0.439	0.773	0.677	1.036	0.613	0.335	0.363	0.345	0.247	0.325	1.312	3.890	0.910	0.677	0.128	0.536	0.043	0.110	0.329	0.324	0.081	0.217	0.079	1.133
157	chr1	27188164	27193149	+	0	NA	3' UTR (NM_006142, exon 1 of 1)	3' UTR (NM_006142, exon 1 of 1)	1023	NM_006142	2810	Hs.523718	NM_006142	ENSG00000175793	SFN	YWHAS	stratifin	protein-coding	3.252	6.852	3.353	8.279	7.434	3.604	5.204	2.088	0.838	2.191	1.317	3.284	20.927	4.128	0.159	2.039	2.534	4.114	5.320	7.312	5.760	6.856	2.610	7.329	7.618	2.908	3.894	8.829	14.420	2.543	2.622	2.019	3.123	5.039	4.546	2.312	3.381	4.230	1.824	9.863	9.915	1.306	1.008	5.204	3.284	2.455	3.022	1.409	0.820
2009	chr12	68040363	68048689	+	0	NA	intron (NM_006482, intron 2 of 2)	intron (NM_006482, intron 2 of 2)	2014	NM_003583	8445	Hs.173135	NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding	4.770	2.371	3.174	3.186	3.346	1.749	3.730	2.114	0.271	3.214	1.778	3.214	9.129	1.144	0.077	3.035	4.704	3.236	4.601	7.416	nan	6.629	3.760	6.334	6.303	4.782	5.971	5.731	11.145	3.508	5.259	2.711	5.673	3.408	2.531	3.563	2.801	2.960	2.172	1.592	4.770	1.008	1.749	3.730	3.214	1.089	1.781	1.735	0.701
1909	chr12	32240906	32247244	+	0	NA	Intergenic	Intergenic	-16110	NM_001003398	636	Hs.505202	NM_001714	ENSG00000151746	BICD1	BICD	BICD cargo adaptor 1	protein-coding	1.839	nan	1.869	0.186	0.240	0.102	0.317	0.046	0.176	0.156	0.157	0.193	0.439	0.018	0.088	0.734	0.434	0.267	0.471	0.575	0.596	1.376	0.489	0.417	0.426	0.663	0.987	0.230	0.254	1.621	1.624	0.307	0.199	11.112	16.124	0.478	1.659	0.452	0.501	0.044	0.183	3.466	0.276	0.317	0.193	0.291	0.016	0.046	0.339
7179	chr7	15714413	15732830	+	0	NA	intron (NM_005924, intron 1 of 2)	intron (NM_005924, intron 1 of 2)	2687	NM_005924	4223	Hs.170355	NM_005924	ENSG00000106511	MEOX2	GAX|MOX2	mesenchyme homeobox 2	protein-coding	nan	0.996	nan	0.235	0.255	0.122	3.766	0.214	0.088	1.229	0.734	0.176	0.393	0.082	0.182	nan	0.229	0.140	0.203	0.468	0.519	0.229	0.147	0.626	0.659	0.535	0.732	0.444	0.491	8.172	9.317	0.085	0.131	0.104	0.101	0.141	0.413	3.843	2.159	0.033	0.039	0.021	0.061	3.766	0.176	0.027	0.076	0.043	0.047
2627	chr14	59605061	59616516	+	0	NA	Intergenic	Intergenic	-44593	NM_001270520	23002	Hs.19156	NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding	nan	nan	0.808	0.108	0.179	0.148	0.154	0.219	0.126	0.069	0.120	0.147	0.311	0.057	0.172	0.280	0.209	0.245	0.333	0.305	0.408	0.160	0.052	nan	0.338	4.946	5.030	0.358	nan	1.620	1.292	0.172	0.246	1.736	1.323	0.374	1.118	0.502	0.435	0.048	0.124	0.449	3.297	0.154	0.147	0.221	0.035	0.109	0.225
3576	chr17	75795218	75800448	+	0	NA	Intergenic	Intergenic	-73192	NR_104134	100132174	Hs.640110	NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA	4.012	1.408	1.344	0.017	1.382	0.494	3.924	0.186	0.030	0.301	0.250	2.978	4.223	0.061	0.103	1.445	2.544	0.216	0.281	5.995	6.734	0.323	0.156	0.297	0.370	nan	3.604	1.292	2.296	9.733	12.068	0.729	1.178	0.194	0.162	4.567	8.482	nan	0.891	2.453	2.118	0.081	0.152	3.924	2.978	3.381	0.096	2.120	1.200
1213	chr10	112592548	112608173	+	0	NA	Intergenic	Intergenic	30302	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA	3.312	nan	3.859	0.220	8.323	4.595	0.292	0.248	0.113	0.169	0.102	1.714	0.944	0.042	0.065	1.388	2.730	0.614	0.713	0.644	0.773	0.713	0.288	0.227	0.285	0.663	1.054	1.709	2.297	0.371	0.303	0.680	1.187	1.443	1.278	0.397	0.821	1.145	0.663	1.199	0.932	0.812	0.586	0.292	1.714	0.483	0.130	1.566	0.443
1093	chr10	33615989	33630661	+	0	NA	non-coding (NR_045259, exon 1 of 16)	non-coding (NR_045259, exon 1 of 16)	508	NM_001330068	8829	Hs.131704	NM_003873	ENSG00000099250	NRP1	BDCA4|CD304|NP1|NRP|VEGF165R	neuropilin 1	protein-coding	1.259	3.490	1.830	0.198	1.034	0.492	0.828	6.232	0.472	0.459	0.286	0.285	1.421	0.082	0.097	0.926	0.970	2.455	nan	2.156	1.733	1.881	0.679	9.534	9.344	0.128	0.239	0.554	0.618	0.348	0.315	1.224	3.665	0.667	0.848	0.109	0.207	0.604	0.443	1.095	0.806	0.310	0.680	0.828	0.285	0.263	2.112	0.941	0.034
8061	chr9	14236695	14264430	+	0	NA	intron (NM_001190737, intron 2 of 10)	intron (NM_001190737, intron 2 of 10)	63483	NM_005596	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding	nan	nan	1.079	0.267	0.448	0.197	0.223	0.966	0.133	0.186	0.268	0.275	0.872	0.144	0.127	0.212	0.165	2.125	5.907	0.467	0.600	0.625	0.277	0.224	0.245	6.091	9.234	0.805	0.916	0.376	0.192	0.354	0.425	0.262	0.397	0.355	0.834	1.167	0.954	0.289	0.089	0.031	0.080	0.223	0.275	0.021	0.059	0.096	0.097
6955	chr6	126226544	126246836	+	0	NA	intron (NM_001122842, intron 11 of 15)	intron (NM_001122842, intron 11 of 15)	-3680	NM_001199622	135112	Hs.171426	NM_181782	ENSG00000111912	NCOA7	ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3	nuclear receptor coactivator 7	protein-coding	1.324	1.472	1.194	0.299	0.536	0.253	0.413	1.759	0.135	0.317	0.192	0.660	0.357	0.069	0.148	0.529	0.601	1.925	6.580	0.470	0.517	5.758	3.801	0.358	0.334	0.371	0.484	0.588	0.546	0.700	0.341	0.185	0.374	0.962	1.603	0.869	1.762	1.175	0.753	0.063	0.206	0.144	0.156	0.413	0.660	0.019	0.400	0.098	0.434
624	chr1	162890003	162902497	+	0	NA	Intergenic	MER45A|DNA|hAT-Tip100	-57645	NM_178550	339512	Hs.407631	NM_178550	ENSG00000185860	CCDC190	C1orf110	coiled-coil domain containing 190	protein-coding	1.523	nan	1.382	0.773	4.511	2.470	0.309	0.242	0.052	0.681	0.516	0.373	0.309	0.052	0.121	0.392	0.352	0.351	0.403	3.120	nan	6.273	2.369	0.123	0.146	0.602	1.056	0.327	nan	0.387	0.380	0.332	0.529	2.160	3.018	0.812	1.974	2.517	1.291	0.149	0.271	0.434	0.094	0.309	0.373	0.047	0.137	0.039	0.815
6323	chr5	72494528	72513007	+	0	NA	Intergenic	L1PA7|LINE|L1	-5979	NR_134291	340090	Hs.434311	NR_134291		LOC340090	-	uncharacterized LOC340090	ncRNA	1.010	nan	1.955	1.105	1.675	0.780	0.798	0.134	0.026	0.629	0.338	2.709	5.097	0.200	0.128	0.344	0.305	0.444	0.515	2.484	2.094	nan	3.021	0.202	0.179	0.351	nan	1.784	2.395	0.878	0.903	0.506	0.956	2.442	2.477	0.295	0.447	1.592	0.719	0.832	2.932	0.610	0.147	0.798	2.709	0.042	0.368	0.573	0.091
371	chr1	77787249	77822727	+	0	NA	intron (NM_174858, intron 5 of 13)	intron (NM_174858, intron 5 of 13)	56701	NM_012093	26289	Hs.559718	NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding	nan	0.825	2.153	0.179	0.229	0.141	0.167	0.184	0.157	0.434	0.290	0.101	0.317	0.064	0.115	0.302	0.243	0.526	0.947	0.430	nan	1.464	0.293	0.257	0.317	3.947	nan	0.702	0.738	1.040	0.730	0.146	0.214	1.209	1.803	0.451	0.779	0.655	0.552	0.022	0.050	0.391	0.256	0.167	0.101	0.542	0.124	0.051	0.253
6209	chr5	22392396	22401243	+	0	NA	intron (NM_004061, intron 3 of 14)	LTR45C|LTR|ERV1	-182910	NM_001317228	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding	0.976	1.288	5.666	0.446	0.137	0.108	0.247	0.143	0.234	0.156	0.299	0.204	0.342	0.049	0.106	0.488	0.188	0.122	0.298	0.497	0.762	0.119	0.069	0.127	0.131	6.719	6.781	0.299	0.379	3.064	2.698	0.116	0.180	1.666	2.177	1.353	3.247	nan	0.744	0.037	0.180	0.732	0.162	0.247	0.204	0.383	0.058	0.023	1.496
6967	chr6	132266286	132285883	+	0	NA	Intergenic	Intergenic	-3566	NM_001901	1490	Hs.410037	NM_001901	ENSG00000118523	CTGF	CCN2|HCS24|IGFBP8|NOV2	connective tissue growth factor	protein-coding	0.698	0.672	0.883	0.067	0.188	0.112	0.194	1.245	0.139	0.080	0.115	0.031	0.219	8.510	0.202	0.506	0.312	0.593	1.287	0.234	0.326	nan	0.348	0.339	0.365	0.125	0.275	0.081	0.108	0.921	0.667	0.134	0.201	0.084	0.109	0.104	nan	0.442	0.408	0.023	0.050	0.005	0.110	0.194	0.031		0.130	0.025	0.044
6872	chr6	92362524	92366097	+	0	NA	intron (NR_104154, intron 2 of 3)	intron (NR_104154, intron 2 of 3)	35836	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA	nan	0.923	nan	0.103	3.518	2.403	1.601	0.094	0.045	0.264	0.366	0.234	2.894		0.059	2.258	0.938	12.972	3.889	0.594	0.606	4.734	2.034	14.141	14.288	1.061	nan	0.196	0.236	nan	0.293	0.178	0.479	1.598	1.201	0.761	1.564	0.590	0.550	0.285	0.050	0.132	0.110	1.601	0.234		0.027		0.139
1041	chr10	14594408	14605026	+	0	NA	intron (NM_001320736, intron 1 of 4)	MIRb|SINE|MIR	-1538	NM_001320738	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding	nan	1.042	1.099	0.339	0.546	0.284	0.133	0.148	0.091	0.164	0.138	0.938	0.238	0.020	0.080	0.419	0.386	0.346	0.621	0.380	0.405	7.016	2.735	0.244	0.175	0.489	0.748	1.005	1.221	0.257	0.083	0.166	0.212	0.488	0.631	0.165	0.433	0.888	0.580	0.021	0.108	0.108	0.187	0.133	0.938	0.207		0.039	0.130
7674	chr8	53109908	53143700	+	0	NA	exon (NM_014682, exon 7 of 26)	exon (NM_014682, exon 7 of 26)	19882	NR_134310	101929341	Hs.147170	NR_134310	ENSG00000253551	LOC101929341	-	uncharacterized LOC101929341	ncRNA	1.556	nan	0.798	0.542	0.997	0.457	0.242	0.066	0.114	0.594	0.353	1.718	0.415	0.039	0.109	0.415	0.275	0.217	0.320	1.136	1.340	1.291	0.511	0.221	0.206	0.988	nan	0.718	0.681	0.655	0.405	0.204	0.288	0.877	0.974	0.334	0.710	1.794	0.982	0.021	0.288	0.226	0.152	0.242	1.718	0.203	0.174	0.055	0.160
8421	chrX	153188456	153200560	+	0	NA	TTS (NM_003491)	TTS (NM_003491)	-2794	NM_001666	393	Hs.701324	NM_001666	ENSG00000089820	ARHGAP4	C1|RGC1|RhoGAP4|SrGAP4|p115	Rho GTPase activating protein 4	protein-coding	2.530	2.783	2.500	1.726	5.765	2.965	3.284	0.554	0.132	0.908	0.583	2.857	5.816	1.560	0.050	4.494	6.984	2.609	2.909	5.026	4.607	3.756	1.313	3.944	4.166	1.174	1.667	4.473	4.487	3.145	3.500	1.817	4.135	1.593	1.840	1.608	2.927	1.467	0.679	2.639	3.761	0.534	1.905	3.284	2.857	0.695	1.807	2.830	0.905
6080	chr4	173946431	173963250	+	0	NA	intron (NM_001034845, intron 12 of 12)	MIR3|SINE|MIR	-135064	NM_017423	51809	Hs.548088	NM_017423	ENSG00000109586	GALNT7	GALNAC-T7|GalNAcT7	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	nan	nan	0.554	0.451	3.937	1.716	0.298	0.049	0.087	0.140	0.141	0.772	1.306	0.032	0.088	0.253	0.150	0.464	nan	0.529	0.500	1.960	0.637	0.093	0.095	0.318	0.441	0.940	0.884	0.362	0.187	0.057	0.248	0.569	0.765	0.089	0.206	0.476	0.311	0.622	0.115	0.163	0.145	0.298	0.772	0.017	0.109	0.017	0.052
1990	chr12	63108244	63130974	+	0	NA	intron (NM_020700, intron 5 of 9)	Kanga1b|DNA|TcMar-Tc2	122143	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i|let-7i	microRNA let-7i	ncRNA	1.859	0.896	2.258	0.189	0.271	0.240	0.778	2.026	0.195	0.221	0.237	0.437	0.768	0.062	0.070	0.639	0.715	3.164	6.397	0.514	nan	0.637	0.289	0.367	0.353	1.224	1.924	1.767	1.893	0.833	0.879	0.326	0.567	0.829	0.948	0.922	1.875	1.333	1.131	0.314	0.341	0.189	0.505	0.778	0.437	0.579	0.327	0.083	0.452
3254	chr17	6397164	6407499	+	0	NA	intron (NM_001165966, intron 3 of 18)	intron (NM_001165966, intron 3 of 18)	54596	NM_019013	54478	Hs.592116	NM_019013	ENSG00000129195	FAM64A	CATS|RCS1	family with sequence similarity 64 member A	protein-coding	0.954	0.502	0.919	0.079	0.617	0.263	0.793	0.095	0.046	0.077	0.096	0.488	0.214	0.116	0.176	3.293	6.338	0.257	0.336	0.511	0.514	0.775	0.241	0.238	0.206	0.497	0.665	0.190	0.339	0.619	0.512	0.606	0.949	0.105	0.165	0.722	1.387	0.544	0.462	0.032	0.332	0.019	0.054	0.793	0.488	0.186	0.165	1.052	0.564
7699	chr8	61868503	61884679	+	0	NA	Intergenic	Intergenic	3716	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA	3.928	0.997	2.607	1.908	1.689	0.881	0.854	0.090	0.149	1.597	1.019	0.728	0.745	0.013	0.092	0.503	0.850	0.220	0.326	0.962	1.059	4.848	1.407	0.086	0.078	1.237	nan	1.335	1.234	nan	2.364	0.187	0.339	4.677	4.307	0.411	0.910	4.971	2.333	0.202	0.992	1.487	1.525	0.854	0.728	19.318	4.071	0.135	0.254
5235	chr22	29490612	29507011	+	0	NA	intron (NM_032045, intron 3 of 9)	intron (NM_032045, intron 3 of 9)	29745	NM_001039570	83999	Hs.229335	NM_032045	ENSG00000183762	KREMEN1	KREMEN|KRM1	kringle containing transmembrane protein 1	protein-coding	nan	0.611	0.798	0.209	0.282	0.136	0.461	0.190	0.099	0.038	0.079	0.415	0.256	0.066	0.070	0.554	0.434	6.898	nan	0.427	0.468	0.381	0.140	0.411	0.385	1.870	nan	0.927	0.808	1.400	0.802	0.145	0.349	0.810	0.881	0.714	nan	1.113	0.892	0.054	0.129	0.336	0.073	0.461	0.415	0.793	0.056	0.061	0.602
2109	chr12	103762292	103801326	+	0	NA	intron (NM_001099336, intron 3 of 5)	MamGypLTR2c|LTR|Gypsy	107979	NR_103526	374470	Hs.534649	NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding	0.856	1.642	nan	4.411	2.853	1.490	0.650	0.071	0.095	2.645	1.198	3.024	2.678	0.048	0.116	0.270	0.152	0.179	0.237	1.801	1.913	8.523	3.488	0.158	0.154	0.453	0.739	4.920	3.087	0.503	0.344	0.096	0.159	1.240	1.620	0.280	0.613	3.716	1.608	4.473	2.659	0.190	0.256	0.650	3.024	0.194	0.292	0.028	0.079
6544	chr5	169599431	169613668	+	0	NA	Intergenic	AluY|SINE|Alu	19596	NR_108022	100507267	Hs.634846	NR_108022		LINC01187	CTB-27N1.1|KIDR	long intergenic non-protein coding RNA 1187	ncRNA	nan	0.587	0.555	0.062	0.130	0.070	0.066	0.116	0.068	0.056	0.034	0.029	0.458	0.054	0.117	0.344	0.211	11.178	5.367	0.234	0.265	0.086	0.013	0.740	0.804	0.110	0.210	0.233	0.352	0.474	0.295	0.210	0.334	0.174	0.227	0.088	0.161	0.883	0.422	0.012	0.062	0.053	0.022	0.066	0.029	0.039		0.056	0.026
5133	chr21	41415892	41435999	+	0	NA	intron (NM_001389, intron 29 of 32)	MIRb|SINE|MIR	158413	NR_039917	100616148		NR_039917	ENSG00000263973	MIR4760	-	microRNA 4760	ncRNA	nan	0.795	2.442	0.855	3.240	1.937	0.863	0.071	0.072	0.571	0.329	4.560	6.948	0.038	0.088	0.452	0.576	0.141	0.284	5.319	5.414	nan	0.963	0.115	0.121	0.157	nan	4.224	5.940	0.812	0.752	0.209	0.247	2.376	2.210	0.385	0.915	4.657	2.397	2.265	0.655	0.819	0.739	0.863	4.560	0.092	1.533	0.078	0.391
3539	chr17	72074014	72123716	+	0	NA	Intergenic	Intergenic	-100930	NM_000999	6169	Hs.380953	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding	1.347	0.907	1.718	0.221	0.454	0.184	1.096	0.095	0.088	0.249	0.145	0.352	1.208	0.046	0.093	0.753	0.871	0.311	0.353	0.977	1.189	0.686	0.267	0.060	0.078	nan	0.687	1.212	0.938	1.612	1.750	0.346	0.386	0.180	0.196	1.225	3.856	nan	0.873	0.263	0.195	0.025	0.298	1.096	0.352	0.141	1.495	0.064	1.441
6311	chr5	70679897	70725022	+	0	NA	intron (NR_134268, intron 2 of 2)	(TA)n|Simple_repeat|Simple_repeat	30847	NR_003922	5370	Hs.742169	NM_031888	ENSG00000169040	PMCHL2	-	pro-melanin concentrating hormone like 2 (pseudogene)	pseudo	0.838	nan	0.751	0.347	0.795	0.384	0.188	0.106	0.093	1.115	0.787	0.203	0.628	0.055	0.143	0.304	0.326	0.187	0.309	0.344	0.462	nan	1.508	0.180	0.180	1.659	nan	0.689	0.711	0.811	0.547	0.221	0.365	4.613	6.117	0.213	0.538	2.102	1.009	0.053	0.645	1.939	0.120	0.188	0.203	0.158	0.650	0.219	0.099
6205	chr5	21321369	21352003	+	0	NA	Intergenic	Intergenic	-122903	NR_027026	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	glucuronidase, beta pseudogene 1	pseudo	1.009	2.169	1.950	1.720	0.668	0.471	0.699	0.456	0.199	1.759	1.245	1.422	2.630	0.263	0.106	0.935	0.788	0.790	1.145	1.656	1.553	2.596	1.484	1.225	0.959	nan	2.974	1.968	2.988	2.059	1.579	0.386	0.921	3.222	4.701	0.347	0.567	nan	1.298	0.346	0.699	2.206	0.649	0.699	1.422	0.471	0.853	0.599	0.142
345	chr1	65530439	65535049	+	0	NA	intron (NM_001321854, intron 1 of 25)	CpG-1205	685	NM_001321853	3716	Hs.207538	NM_002227	ENSG00000162434	JAK1	JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding	8.997	2.767	9.499	4.910	1.473	0.822	5.903	4.173	0.140	2.302	1.250	4.736	9.053	2.830	0.128	10.699	12.927	8.885	9.996	15.190	13.026	5.669	1.979	13.739	13.634	nan	7.721	9.418	nan	9.270	10.721	6.386	12.459	2.882	2.225	7.149	7.872	3.273	1.871	3.744	5.868	0.618	5.914	5.903	4.736	1.723	3.306	5.712	2.495
3323	chr17	20752779	20781888	+	0	NA	3' UTR (NM_001004306, exon 4 of 4)	3' UTR (NM_001004306, exon 4 of 4)	-4413	NR_104185	440416	Hs.661076	NR_104185	ENSG00000233098	CCDC144NL-AS1	-	CCDC144NL antisense RNA 1	ncRNA	nan	nan	nan	0.102	0.691	0.275	0.154	0.103	0.083	0.140	0.093	0.078	0.553	0.287	0.186	0.630	0.498	0.795	0.902	0.244	0.372	0.663	0.227	0.154	0.174	0.577	0.859	1.490	1.538	2.695	1.828	0.169	0.305	1.011	1.105	5.775	7.997	0.390	0.380	0.033	0.077	0.248	0.044	0.154	0.078	0.102	0.052	0.044	3.024
613	chr1	160656028	160672848	+	0	NA	intron (NM_001256030, intron 1 of 2)	HERVK-int|LTR|ERVK	17203	NM_001256030	962	Hs.243564	NM_001778	ENSG00000117091	CD48	BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48	CD48 molecule	protein-coding	1.233	nan	1.292	0.095	0.245	0.123	0.198	0.146	0.077	0.084	0.152	0.089	0.423	0.104	0.115	0.508	0.389	0.346	0.432	0.400	nan	0.162	0.115	0.180	0.154	0.223	0.344	0.203	nan	0.439	0.228	0.300	0.412	0.085	0.108	2.373	5.692	0.307	0.357	0.080	0.269	0.045	0.039	0.198	0.089	0.063	0.024	0.070	2.299
5141	chr21	43527597	43546945	+	0	NA	intron (NM_001004416, intron 14 of 22)	L1MB7|LINE|L1	-8627	NR_027243	150147	Hs.558646	NM_152507	ENSG00000184385	UMODL1-AS1	C21orf128	UMODL1 antisense RNA 1	ncRNA	nan	1.444	3.925	0.126	0.706	0.266	0.556	0.089	0.100	0.229	0.196	1.089	4.628	0.046	0.059	0.736	0.915	0.676	1.057	0.732	0.779	nan	0.441	0.844	0.926	0.508	nan	0.678	1.159	0.670	0.578	0.935	1.086	1.610	1.517	0.335	0.423	2.017	1.193	1.307	1.281	0.359	0.045	0.556	1.089	0.214	0.315	0.296	0.052
7970	chr8	142273869	142303390	+	0	NA	Intergenic	Intergenic	-23901	NM_001286646	57210	Hs.372492	NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding	1.529	0.889	nan	0.365	0.545	0.223	0.312	0.229	0.130	0.069	0.061	0.316	1.577	0.066	0.089	0.473	0.529	0.330	0.637	nan	1.139	nan	0.243	0.666	0.755	0.322	0.629	4.702	5.561	1.408	1.288	0.579	0.822	0.172	0.181	0.445	0.695	1.065	0.835	3.704	1.526	0.032	0.091	0.312	0.316	0.189	0.554	0.159	0.309
5181	chr22	18631223	18652159	+	0	NA	intron (NM_017414, intron 2 of 10)	intron (NM_017414, intron 2 of 10)	8933	NM_017414	11274	Hs.38260	NM_017414	ENSG00000184979	USP18	ISG43|UBP43	ubiquitin specific peptidase 18	protein-coding	0.931	nan	1.296	1.546	1.049	0.671	0.780	0.722	0.223	0.835	0.559	1.475	3.005	0.337	0.072	1.915	2.155	0.992	1.244	1.814	1.638	3.101	0.997	2.071	2.170	0.209	0.330	2.946	3.615	1.032	1.208	0.889	1.189	2.285	2.906	0.122	0.208	4.467	2.362	0.671	1.348	0.752	0.256	0.780	1.475	0.450	0.980	0.747	0.076
6841	chr6	70570362	70580853	+	0	NA	promoter-TSS (NM_001858)	promoter-TSS (NM_001858)	-841	NM_001858	1310	Hs.444842	NM_001858	ENSG00000082293	COL19A1	COL9A1L|D6S228E	collagen type XIX alpha 1 chain	protein-coding	nan	nan	1.586	0.219	0.262	0.076	0.816	0.114	0.062	0.181	0.133	0.091	1.086	0.031	0.096	0.566	0.486	0.525	0.916	0.187	0.364	0.212	0.125	0.684	0.672	6.282	7.470	0.404	0.431	1.463	1.696	0.241	0.622	0.115	0.146	0.460	0.836	0.510	0.373	0.180	0.072	0.028	0.031	0.816	0.091	0.249	0.212	0.086	0.212
952	chr1	243507666	243518932	+	0	NA	intron (NM_006642, intron 12 of 17)	intron (NM_006642, intron 12 of 17)	3821	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA	nan	1.190	nan	0.233	0.429	0.156	0.239	0.491	0.108	0.168	0.239	0.218	0.350	0.393	0.110	0.529	0.443	1.278	1.048	0.608	0.769	0.412	0.144	0.366	0.401	4.060	4.270	0.333	0.298	1.901	0.999	0.133	0.217	0.117	0.148	0.537	0.886	0.514	0.445	0.035	0.039	0.060	0.212	0.239	0.218	0.234	0.136	0.079	0.187
2691	chr14	78059041	78083452	+	0	NA	intron (NM_004863, intron 1 of 11)	intron (NM_004863, intron 1 of 11)	11864	NM_004863	9517	Hs.435661	NM_004863	ENSG00000100596	SPTLC2	HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a	serine palmitoyltransferase long chain base subunit 2	protein-coding	1.569	0.996	0.886	0.623	0.458	0.234	0.503	0.540	0.158	0.218	0.174	0.434	1.086	3.798	0.184	0.626	0.579	2.118	2.097	0.889	0.898	0.678	0.236	1.009	1.019	0.678	0.983	1.000	nan	1.290	1.045	0.315	0.726	0.491	0.601	0.370	0.789	1.116	nan	0.336	0.503	0.101	0.465	0.503	0.434	0.223	0.208	0.123	0.226
6758	chr6	40671301	40688372	+	0	NA	Intergenic	Intergenic	-124633	NM_020737	57497	Hs.250015	NM_020737	ENSG00000156564	LRFN2	FIGLER2|KIAA1246|SALM1	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	1.268	1.212	1.149	1.370	0.788	0.366	1.535	0.104	0.085	1.254	0.503	2.053	2.386	0.026	0.117	0.594	1.037	0.192	0.250	1.019	0.875	8.413	1.887	0.339	0.395	0.385	0.633	4.708	nan	1.250	1.347	0.285	0.391	3.124	2.747	0.826	1.976	1.736	1.176	0.734	0.554	0.696	0.046	1.535	2.053	0.509	3.428	0.087	0.828
4804	chr20	980567	987068	+	0	NA	promoter-TSS (NM_001029871)	promoter-TSS (NM_001029871)	-910	NM_001029871	343637	Hs.444980	NM_001029871	ENSG00000101282	RSPO4	C20orf182|CRISTIN4	R-spondin 4	protein-coding	0.659	0.739	0.533	0.093	0.225	0.123	0.178	0.037	0.049	0.073	0.051	0.037	1.020	0.083	0.069	12.098	15.023	0.345	0.296	0.277	0.290	0.653	0.245	1.059	1.144	0.154	0.281	0.255	0.305	2.169	1.741	11.449	15.717	0.051	0.103	0.610	0.677	0.280	0.207	0.171	0.069	0.072		0.178	0.037	0.492	0.094	9.405	0.132
4498	chr2	132242914	132251824	+	0	NA	intron (NM_001085365, intron 2 of 2)	AluJb|SINE|Alu	1440	NR_039945	100616378		NR_039945	ENSG00000173272	MIR4784	-	microRNA 4784	ncRNA	nan	1.958	nan	2.478	3.860	2.032	3.276	0.801	0.132	1.306	1.027	4.174	5.900	1.810	0.058	4.017	4.327	4.243	5.786	5.617	4.693	5.955	2.596	4.370	4.111	2.675	3.634	4.428	nan	6.715	8.609	2.980	6.315	2.882	2.853	4.879	5.259	1.290	0.685	4.201	1.573	0.554	1.378	3.276	4.174	2.853	1.688	1.438	1.668
1071	chr10	24660720	24680333	+	0	NA	intron (NM_001098500, intron 4 of 18)	MER1B|DNA|hAT-Charlie	-67836	NM_001282769	56243	Hs.445885	NM_019590	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding	0.677	0.794	1.196	0.082	0.276	0.115	0.274	0.571	0.230	0.065	0.077	0.055	0.145	0.022	0.093	3.498	3.095	4.203	8.901	0.248	0.198	0.226	0.111	0.435	0.531	0.176	0.243	0.097	0.113	0.693	0.601	2.628	2.726	0.037	0.044	0.196	0.302	0.116	0.166	1.333	0.490	0.010	0.089	0.274	0.055	0.064	0.031	2.106	0.070
3058	chr16	14278124	14300192	+	0	NA	intron (NM_001308142, intron 3 of 16)	intron (NM_001308142, intron 3 of 16)	-106987	NR_132983	100129781	Hs.190748	NR_132983		MIR193BHG	-	MIR193B host gene	ncRNA	0.999	0.991	nan	3.726	1.540	0.770	0.587	0.629	0.160	1.596	0.949	1.247	0.832	0.049	0.089	0.304	0.251	0.120	0.205	0.645	0.679	8.803	3.524	1.028	1.033	0.506	0.746	4.837	5.992	nan	0.233	0.293	0.324	1.842	1.808	0.301	0.639	3.241	1.617	0.221	0.169	0.282	0.280	0.587	1.247	0.018	1.714	0.090	0.191
4331	chr2	48665945	48682513	+	0	NA	intron (NM_152994, intron 1 of 20)	intron (NM_152994, intron 1 of 20)	6321	NR_024188	129285	Hs.654619	NM_152994	ENSG00000162869	PPP1R21	CCDC128|KLRAQ1	protein phosphatase 1 regulatory subunit 21	protein-coding	2.050	nan	1.789	1.595	1.691	1.034	0.995	0.663	0.127	1.011	0.625	2.073	3.136	0.859	0.159	1.178	1.561	1.035	2.165	nan	3.370	3.946	2.055	3.223	3.429	1.699	2.059	2.077	3.111	2.348	1.823	0.821	1.295	0.884	0.883	4.456	nan	nan	1.010	1.178	1.207	0.086	0.459	0.995	2.073	0.197	0.360	0.377	2.603
4158	chr19	58890765	58899995	+	0	NA	Intergenic	AluSc8|SINE|Alu	2845	NR_039910	100616168		NR_039910	ENSG00000266640	MIR4754	mir-4754	microRNA 4754	ncRNA	4.929	3.036	5.343	4.137	6.613	3.766	4.415	1.593	0.385	2.001	0.942	4.151	5.141	3.439	0.192	8.930	7.767	3.993	5.603	8.162	7.510	9.967	4.647	4.108	4.407	4.195	6.066	6.328	8.609	8.841	9.372	3.741	4.970	6.200	6.532	5.464	5.900	4.608	2.512	3.975	4.586	1.210	2.496	4.415	4.151	1.989	2.123	1.298	1.961
5388	chr3	62651501	62677699	+	0	NA	intron (NM_183394, intron 3 of 27)	intron (NM_183394, intron 3 of 27)	196464	NM_003716	8618	Hs.654933	NM_003716	ENSG00000163618	CADPS	CADPS1|CAPS|CAPS1|UNC-31	calcium dependent secretion activator	protein-coding	1.547	nan	0.997	0.053	0.215	0.090	0.108	0.052	0.031	0.102	0.126	0.141	0.282	0.025	0.075	0.214	0.203	0.165	0.195	0.472	0.480	0.358	0.145	0.053	0.073	1.214	1.600	0.267	0.303	2.351	2.132	0.161	0.218	0.153	0.301	1.851	nan	0.625	0.523	0.055	0.206	0.069	0.070	0.108	0.141	0.338	0.022	0.098	3.924
6602	chr6	7121221	7157040	+	0	NA	intron (NM_001003700, intron 1 of 11)	intron (NM_001003700, intron 1 of 11)	31044	NM_001003699	6239	Hs.298248	NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding	1.532	2.118	2.623	2.061	1.553	0.756	0.455	0.265	0.153	1.045	0.569	4.114	2.254	0.482	0.142	3.276	4.354	1.640	2.268	2.191	2.549	1.814	0.623	1.695	1.835	0.867	1.206	4.498	5.034	0.774	0.538	1.533	2.443	2.689	2.977	1.335	2.341	2.795	1.506	1.665	2.185	0.719	0.972	0.455	4.114	0.282	1.291	1.878	0.430
5817	chr4	666625	677720	+	0	NA	intron (NM_002477, intron 1 of 6)	intron (NM_002477, intron 1 of 6)	461	NM_002477	4636	Hs.410970	NM_002477	ENSG00000215375	MYL5	-	myosin light chain 5	protein-coding	1.477	1.032	nan	2.473	1.633	0.831	1.431	0.553	0.116	1.071	0.469	1.779	2.735	1.145	0.063	1.709	2.259	1.950	2.763	1.792	1.690	nan	1.695	2.861	3.051	0.707	0.901	1.521	2.387	1.346	1.241	1.500	1.997	0.743	0.542	1.088	1.383	nan	1.405	0.530	4.140	0.134	1.645	1.431	1.779	0.350	0.820	0.569	0.731
6393	chr5	103001461	103020912	+	0	NA	Intergenic	Intergenic	-112684	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix hydrolase 12	protein-coding	0.784	1.954	0.838	5.211	9.973	5.561	0.156	0.062	0.074	0.925	0.430	0.250	1.976	0.034	0.119	0.239	0.224	0.338	0.302	1.910	2.487	1.139	0.434	0.172	0.150	0.422	0.631	4.537	6.531	1.118	1.158	0.094	0.143	1.743	1.456	0.250	0.657	1.174	0.740	0.700	4.928	0.244	0.143	0.156	0.250	0.025	2.494	0.020	0.108
5949	chr4	80304660	80319570	+	0	NA	Intergenic	MIRb|SINE|MIR	17257	NM_033214	2712	Hs.98008	NM_033214	ENSG00000196475	GK2	GKP2|GKTA	glycerol kinase 2	protein-coding	1.114	0.591	1.060	0.071	0.287	0.162	0.400	0.131	0.011	0.084	0.131	0.088	0.263	0.029	0.056	0.269	0.263	0.128	0.223	0.234	0.295	0.374	0.182	0.224	0.211	3.671	nan	0.382	0.302	1.923	1.439	0.113	0.137	1.265	1.284	0.225	nan	0.427	0.296	0.023	0.113	0.224	0.101	0.400	0.088	0.626	0.040	0.053	0.166
179	chr1	31220195	31224625	+	0	NA	intron (NM_006762, intron 1 of 7)	intron (NM_006762, intron 1 of 7)	8273	NM_006762	7805	Hs.371021	NM_006762	ENSG00000162511	LAPTM5	CLAST6	lysosomal protein transmembrane 5	protein-coding	4.465	nan	2.628	0.220	4.000	2.463	0.887	0.321		0.296	0.183	2.677	1.639	0.245	0.127	0.437	0.824	0.309	0.610	3.668	4.076	nan	0.229	0.439	0.448	4.389	4.971	4.490	5.874	nan	2.993	2.113	4.015	3.071	3.071	0.560	0.728	0.749	nan	1.990	0.700	1.154	0.313	0.887	2.677	3.081	3.505	5.665	0.111
8226	chr9	101925696	101949442	+	0	NA	Intergenic	Intergenic	46677	NM_033087	85365	Hs.40919	NM_033087	ENSG00000119523	ALG2	CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2	ALG2, alpha-1,3/1,6-mannosyltransferase	protein-coding	1.340	0.811	1.865	0.885	1.204	0.592	0.484	0.149	0.075	0.198	0.136	1.210	0.662	0.039	0.080	1.297	2.132	1.752	1.706	1.515	1.808	0.867	0.311	0.362	0.369	0.768	0.975	1.231	nan	2.908	2.479	1.508	2.344	0.840	0.598	1.709	5.092	nan	0.685	0.052	0.124	0.505	1.951	0.484	1.210	0.663	0.585	1.868	1.747
6760	chr6	41239797	41265835	+	0	NA	intron (NM_001242589, intron 1 of 2)	intron (NM_001242589, intron 1 of 2)	1667	NM_001242590	54210	Hs.283022	NM_018643	ENSG00000124731	TREM1	CD354|TREM-1	triggering receptor expressed on myeloid cells 1	protein-coding	0.775	1.427	0.729	1.329	3.277	1.811	0.335	0.115	0.123	0.319	0.192	0.925	2.346	0.050	0.111	1.238	1.798	0.226	0.586	1.451	1.504	3.629	3.187	0.306	0.361	0.162	0.270	4.733	nan	0.397	0.248	0.516	0.942	0.127	0.153	0.171	0.319	1.574	1.109	3.577	1.356	0.033	0.045	0.335	0.925	0.026	0.982	0.357	0.086
3705	chr18	26660230	26688369	+	0	NA	Intergenic	L1M4|LINE|L1	-916889	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding	0.656	0.954	0.865	0.792	0.299	0.114	0.559	0.088	0.046	0.330	0.197	0.310	0.583	0.028	0.091	0.375	0.258	0.184	nan	0.690	0.720	7.515	3.334	0.127	0.115	0.134	0.157	2.483	2.289	0.335	0.134	0.075	0.111	0.363	0.270	0.279	0.609	2.204	1.304	0.030	0.091	0.031	0.189	0.559	0.310	0.004	0.190	0.014	0.153
3948	chr19	5577411	5598232	+	0	NA	intron (NM_014649, intron 19 of 20)	CpG-12677	-19776	NR_027064	257000	Hs.515575	NM_153375	ENSG00000223573	TINCR	LINC00036|NCRNA00036|PLAC2|onco-lncRNA-16	tissue differentiation-inducing non-protein coding RNA	ncRNA	0.663	0.949	1.638	2.346	1.983	1.062	1.354	0.072	0.085	0.241	0.214	2.347	0.911	0.083	0.071	0.643	0.630	0.504	0.479	0.853	0.922	1.478	0.410	0.579	0.565	0.509	0.824	9.590	nan	0.545	0.385	0.243	0.324	0.414	0.346	0.157	0.302	1.404	0.796	3.142	0.353	0.082	0.083	1.354	2.347	0.084	0.561	0.043	0.067
2499	chr14	25403786	25429942	+	0	NA	intron (NM_001304477, intron 2 of 5)	intron (NM_001304477, intron 2 of 5)	101342	NM_001304477	29091	Hs.508958	NM_014178	ENSG00000168952	STXBP6	HSPC156|amisyn	syntaxin binding protein 6	protein-coding	nan	1.026	0.818	0.647	0.271	0.154	0.800	1.007	0.160	0.071	0.110	0.146	1.295	0.016	0.125	0.157	0.099	0.350	0.436	0.730	0.791	0.749	0.266	0.120	0.133	0.243	0.479	1.842	nan	0.603	0.245	0.146	0.179	0.356	0.502	0.113	0.168	0.589	0.591	5.761	0.320	0.047	0.103	0.800	0.146		0.039	0.023	0.123
7701	chr8	61943173	61975301	+	0	NA	Intergenic	L1PA3|LINE|L1	-78930	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA	1.849	0.840	1.552	1.119	0.680	0.349	0.295	0.061	0.070	0.674	0.258	1.000	1.302	0.027	0.087	0.375	0.315	0.203	0.242	0.638	0.900	3.613	1.120	0.111	0.105	0.535	nan	2.262	2.237	nan	0.549	0.269	0.389	1.605	1.499	0.631	1.845	1.618	1.106	0.038	0.252	0.326	0.259	0.295	1.000	2.476	0.943	0.073	0.480
4016	chr19	31173034	31188485	+	0	NA	Intergenic	Intergenic	317459	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding	1.962	0.947	1.627	0.098	0.326	0.177	1.168	0.122	0.074	0.051	0.059	0.387	0.517	0.069	0.088	0.651	0.837	0.367	0.446	0.176	0.257	0.216	0.082	0.080	0.090	0.405	0.810	0.121	0.153	nan	0.151	0.342	0.403	0.046	0.128	2.689	6.745	0.439	0.553	0.286	0.075	0.012	0.115	1.168	0.387	0.529	0.052	0.083	2.643
3882	chr18	68159521	68174967	+	0	NA	Intergenic	Intergenic	-115417	NR_110764	101060542	Hs.586967	NR_110764	ENSG00000266278	LINC01910	-	long intergenic non-protein coding RNA 1910	ncRNA	0.814	0.840	0.599	0.154	0.244	0.196	0.904	0.072	0.052	0.264	0.231	0.605	0.349	0.014	0.084	0.491	0.361	0.227	0.445	0.614	0.630	5.404	2.035	0.379	nan	0.421	nan	0.642	0.508	0.334	0.221	0.242	0.356	1.005	1.123	0.192	0.248	2.084	1.429	0.050	0.046	0.123	0.072	0.904	0.605	0.013	0.206	0.019	0.104
1830	chr12	11857470	11887274	+	0	NA	intron (NM_001987, intron 1 of 7)	intron (NM_001987, intron 1 of 7)	69584	NM_001987	2120	Hs.504765	NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant 6	protein-coding	0.792	1.060	1.729	2.131	0.936	0.454	0.314	0.164	0.017	0.416	0.285	0.974	3.807	0.080	0.127	0.340	0.312	0.525	1.083	nan	0.975	1.614	0.697	0.626	0.738	0.385	0.682	4.865	5.344	0.460	0.246	0.839	1.549	0.089	0.110	0.263	0.467	0.809	0.608	2.433	1.471	0.032	0.032	0.314	0.974	0.036	0.075	1.249	0.112
3917	chr18	77000316	77023871	+	0	NA	intron (NM_198531, intron 11 of 29)	MIRb|SINE|MIR	-143679	NM_001278669	4772	Hs.534074	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T-cells 1	protein-coding	nan	nan	0.632	0.415	0.376	0.215	0.376	0.108	0.034	0.387	0.203	0.498	0.594	0.126	0.075	0.403	0.276	0.460	0.914	0.674	nan	10.800	4.757	0.840	0.882	0.192	0.336	0.707	nan	0.351	0.200	0.151	0.259	0.821	1.648	0.204	0.275	1.280	0.680	0.053	0.114	0.142	0.067	0.376	0.498	0.054	0.182	0.027	0.068
3060	chr16	14650206	14667156	+	0	NA	intron (NM_002582, intron 18 of 23)	intron (NM_002582, intron 18 of 23)	65447	NM_001242992	5073	Hs.253197	NM_002582	ENSG00000140694	PARN	DAN|DKCB6|PFBMFT4	poly(A)-specific ribonuclease	protein-coding	0.954	1.333	nan	2.649	0.432	0.265	0.394	0.298	0.123	0.407	0.325	0.268	0.451	0.115	0.083	0.927	1.311	0.385	0.441	0.350	0.370	6.754	2.410	0.682	0.610	0.483	0.719	1.522	1.608	nan	0.216	1.397	2.417	0.326	0.738	0.292	0.799	1.277	0.717	0.391	0.215	0.050	0.211	0.394	0.268	0.252	0.084	4.187	0.189
3167	chr16	71840491	71844291	+	0	NA	intron (NM_001030007, intron 1 of 23)	CpG	585	NM_001030007	164	Hs.461253	NM_001128	ENSG00000166747	AP1G1	ADTG|CLAPG1	adaptor related protein complex 1 gamma 1 subunit	protein-coding	4.108	3.199	nan	5.447	4.741	2.395	3.471	2.601	0.368	1.938	0.783	3.182	6.636	2.348	0.177	6.544	6.071	6.860	9.653	6.509	5.820	6.366	4.920	21.248	23.666	2.599	3.083	6.522	12.419	7.034	6.678	3.363	6.550	3.906	4.289	5.402	4.046	4.047	2.102	1.923	2.396	0.374	2.257	3.471	3.182	1.158	2.402	0.942	1.437
7411	chr7	102131216	102158295	+	0	NA	intron (NM_001277335, intron 5 of 19)	AluJr|SINE|Alu	13469	NM_001277335	100271927	Hs.530089	NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding	nan	1.488	3.258	0.750	1.519	0.814	2.843	0.421	0.219	0.869	0.609	1.014	2.128	0.745	0.195	1.383	2.457	0.974	1.421	2.465	2.138	1.919	0.582	1.843	2.137	0.477	0.937	2.796	3.339	1.944	1.870	0.714	0.865	1.083	0.924	1.822	nan	1.652	0.952	0.661	3.081	0.492	0.404	2.843	1.014	0.991	1.435	0.550	0.735
6433	chr5	123905571	123948984	+	0	NA	Intergenic	Intergenic	-153064	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA	nan	0.990	0.782	0.380	0.369	0.185	0.210	0.335	0.148	0.192	0.162	0.171	0.504	5.779	0.209	0.714	0.690	2.831	nan	0.333	0.410	1.369	0.324	0.462	0.505	0.579	0.889	0.498	0.390	0.669	0.518	0.247	0.434	0.556	0.807	0.321	0.779	0.458	0.377	0.109	0.203	0.092	0.128	0.210	0.171	0.179	0.350	0.226	0.151
5695	chr3	177156858	177172097	+	0	NA	intron (NR_047568, intron 1 of 3)	intron (NR_047568, intron 1 of 3)	4768	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA	1.296	2.682	1.481	0.174	0.827	0.437	0.494	1.942	0.380	0.226	0.247	0.353	0.717	0.171	0.149	0.345	0.184	1.520	5.964	0.470	0.444	1.146	0.439	0.216	0.270	0.968	1.363	0.586	0.534	0.801	0.361	0.124	0.156	0.265	0.398	0.363	0.866	0.780	0.667	0.123	0.114	0.050	0.407	0.494	0.353	0.077	0.087	0.085	0.322
4203	chr2	7758219	7781378	+	0	NA	Intergenic	L3|LINE|CR1	208406	NR_038432	100506274	Hs.177930	NR_038432	ENSG00000229727	LOC100506274	-	uncharacterized LOC100506274	ncRNA	0.789	0.552	0.612	0.333	2.721	1.246	0.441	0.072	0.055	1.568	0.705	5.540	1.151	0.053	0.125	0.305	0.236	0.202	0.242	1.692	1.988	5.140	3.640	0.096	0.112	0.607	0.857	0.883	0.360	0.665	0.564	0.133	0.183	0.781	1.111	0.088	0.220	2.883	1.418	0.098	0.198	0.176	0.126	0.441	5.540	0.196	1.134	0.034	0.059
7163	chr7	12472305	12479541	+	0	NA	Intergenic	Intergenic	-32356	NR_144534	221806	Hs.669526	NM_001135924	ENSG00000146530	VWDE	-	von Willebrand factor D and EGF domains	protein-coding	nan	1.207	nan	0.287	3.782	1.796	0.089	0.128	0.111	1.432	0.603	2.660	0.730		0.165	nan	0.606	0.351	0.390	6.244	5.899	5.121	1.562	0.726	0.730	1.745	2.041	0.543	0.449	0.343	0.196	0.199	0.390	1.284	1.405	0.229	0.331	5.068	2.447	0.027	0.123	0.118	0.384	0.089	2.660	0.027	0.872	0.109	
7453	chr7	116336714	116352316	+	0	NA	intron (NM_001127500, intron 2 of 20)	intron (NM_001127500, intron 2 of 20)	32071	NM_001324401	4233	Hs.132966	NM_000245	ENSG00000105976	MET	AUTS9|DFNB97|HGFR|RCCP2|c-Met	MET proto-oncogene, receptor tyrosine kinase	protein-coding	nan	0.766	1.062	3.293	0.128	0.154	0.398	1.538	0.134	3.018	1.835	0.092	3.320	0.540	0.170	0.449	0.398	1.251	1.492	0.305	0.434	0.947	0.558	0.323	0.372	0.255	0.491	3.115	4.355	0.507	0.325	0.259	0.480	2.958	2.585	0.319	0.495	1.773	1.214	1.332	3.126	0.486	0.068	0.398	0.092	0.374	0.200	0.108	0.221
258	chr1	41897357	41917361	+	0	NA	Intergenic	AluSx|SINE|Alu	42995	NM_001302269	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding	14.135	0.752	nan	0.213	0.346	0.193	0.250	0.411	0.186	0.165	0.230	0.191	1.059	0.082	0.075	0.320	0.451	0.243	0.506	0.883	0.978	0.953	0.228	0.393	0.485	1.423	nan	nan	2.623	2.037	1.850	0.492	nan	0.297	0.321	0.423	0.754	1.262	0.783	3.695	0.139	0.091	0.040	0.250	0.191	0.735	0.117	0.064	0.155
2620	chr14	58665593	58668837	+	0	NA	intron (NM_018477, intron 1 of 12)	intron (NM_018477, intron 1 of 12)	382	NM_018477	55860	Hs.509451	NM_018477	ENSG00000131966	ACTR10	ACTR11|Arp10|Arp11|HARP11	actin-related protein 10 homolog	protein-coding	7.124	nan	5.220	5.530	3.246	1.786	3.558	3.238	0.266	1.510	0.769	3.600	7.395	3.436	0.222	3.498	3.976	5.274	6.649	7.396	7.392	4.469	2.782	17.644	18.461	3.745	4.160	5.495	9.810	6.780	5.878	3.493	4.959	3.372	4.518	15.530	16.337	nan	1.681	2.864	3.538	0.379	1.642	3.558	3.600	0.716	2.468	0.918	7.906
8137	chr9	41919365	41937430	+	0	NA	Intergenic	AluSx1|SINE|Alu	26780	NR_126044	389741	Hs.380240	NM_203448	ENSG00000278175	GLIDR	LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA	0.744	1.822	1.850	0.202	0.365	0.125	1.682	0.070	0.080	0.191	0.213	0.157	0.718	0.168	0.071	0.333	0.360	0.775	1.339	0.756	0.659	1.850	0.441	0.621	0.534	3.595	4.192	0.313	0.297	0.487	0.290	0.415	0.545	1.151	1.908	0.253	0.425	1.576	1.147	0.057	0.044	0.190	0.079	1.682	0.157	0.115	0.281	0.076	0.062
4022	chr19	33863148	33868148	+	0	NA	intron (NM_001252296, intron 1 of 1)	intron (NM_001252296, intron 1 of 1)	218	NM_001252296	1054	Hs.429666	NM_001806	ENSG00000153879	CEBPG	GPE1BP|IG/EBP-1	CCAAT/enhancer binding protein gamma	protein-coding	5.142	4.276	4.831	7.910	4.012	2.336	2.220	3.133	0.290	1.909	0.795	4.354	15.243	4.493	0.209	3.906	5.192	4.438	6.479	5.415	4.688	7.882	4.775	11.742	12.136	2.973	4.327	5.626	7.784	nan	6.516	12.215	15.038	5.360	7.386	3.681	4.079	3.223	1.626	4.329	5.172	0.823	2.093	2.220	4.354	0.911	2.193	2.763	1.035
2138	chr12	110018074	110045959	+	0	NA	intron (NM_001114185, intron 9 of 10)	L2c|LINE|L2	20516	NM_001114185	4598	Hs.130607	NM_000431	ENSG00000110921	MVK	LRBP|MK|MVLK|POROK3	mevalonate kinase	protein-coding	1.165	0.711	nan	0.235	0.492	0.138	0.355	0.174	0.070	0.487	0.398	0.477	0.455	0.090	0.078	0.505	0.891	0.277	0.475	1.218	1.123	0.925	0.257	0.541	0.577	0.347	0.640	1.013	1.235	2.810	2.489	0.440	0.559	0.431	0.554	1.242	2.633	1.438	0.800	0.080	0.317	0.072	0.527	0.355	0.477	0.823	0.846	0.095	0.810
6479	chr5	141451888	141490804	+	0	NA	Intergenic	AluJr4|SINE|Alu	-16978	NM_030571	80762	Hs.9788	NM_030571	ENSG00000131507	NDFIP1	N4WBP5	Nedd4 family interacting protein 1	protein-coding	nan	1.217	0.970	0.199	0.554	0.230	0.211	0.306	0.131	0.278	0.272	0.887	0.946	0.293	0.124	0.471	0.363	0.664	1.005	0.895	0.863	0.776	0.258	0.860	0.899	0.804	1.045	0.484	0.770	1.008	0.955	0.369	0.573	0.796	0.706	1.470	3.969	0.965	0.576	1.302	0.430	0.169	0.163	0.211	0.887	0.085	0.212	0.135	0.857
7376	chr7	92435997	92470327	+	0	NA	intron (NM_001145306, intron 2 of 7)	AluJo|SINE|Alu	10069	NM_001259	1021	Hs.119882	NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding	nan	0.822	nan	0.424	0.611	0.411	0.391	1.075	0.136	0.252	0.195	0.052	0.638	4.759	0.226	0.551	0.481	0.791	1.377	0.242	0.301	1.214	0.288	7.128	7.111	1.120	1.425	0.727	0.671	2.053	1.828	0.801	1.681	0.893	1.362	0.988	nan	0.956	0.845	0.018	0.153	0.182	0.153	0.391	0.052	0.110	0.314	0.870	0.425
141	chr1	23914793	23928303	+	0	NA	Intergenic	Intergenic	-32276	NR_027042	259283	Hs.523369	NM_001348075	ENSG00000197880	MDS2	-	myelodysplastic syndrome 2 translocation associated	protein-coding	2.573	3.066	nan	1.602	1.330	0.602	1.165	0.372	0.111	0.728	0.373	0.542	6.176	0.313	0.098	0.434	0.568	0.581	1.356	1.509	1.188	2.251	0.467	0.718	0.686	2.905	3.944	3.515	3.762	5.235	4.810	0.307	0.433	1.862	2.159	1.990	5.466	2.514	1.224	1.741	0.994	0.885	1.198	1.165	0.542	1.276	1.803	0.111	2.077
3043	chr16	6994218	7046070	+	0	NA	intron (NM_001142334, intron 1 of 13)	AluJo|SINE|Alu	196334	NM_001142334	54715	Hs.459842	NM_018723	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog 1	protein-coding	0.923	nan	0.666	0.051	0.186	0.090	0.083	0.056	0.093	0.051	0.106	0.035	0.216	0.032	0.073	0.271	0.171	0.041	0.041	0.105	0.150	nan	0.103	0.089	0.113	0.119	nan	0.086	0.119	0.236	0.079	0.093	0.127	0.077	0.079	1.162	4.303	0.515	0.462	0.110	0.073	0.022	0.496	0.083	0.035	0.113	0.029	0.023	1.321
4228	chr2	15821308	15836508	+	0	NA	Intergenic	Intergenic	-1998	NR_110201	101926966	Hs.502835	NR_110201	ENSG00000231031	LINC01804	-	long intergenic non-protein coding RNA 1804	ncRNA	0.646	0.422	0.549	0.231	0.184	0.084	0.085	0.075	0.011	0.054	0.093	0.032	0.353	0.057	0.118	0.357	0.173	0.188	0.344	0.261	0.288	0.376	0.131	0.144	0.136	0.118	0.233	0.214	nan	0.574	0.281	6.056	9.218	0.036	0.053	0.307	nan	0.323	0.354	0.271	0.101	0.024	0.021	0.085	0.032	0.021	0.080	3.527	0.082
1230	chr10	121409881	121430076	+	0	NA	intron (NM_004281, intron 1 of 3)	intron (NM_004281, intron 1 of 3)	9096	NM_004281	9531	Hs.523309	NM_004281	ENSG00000151929	BAG3	BAG-3|BIS|CAIR-1|MFM6	BCL2 associated athanogene 3	protein-coding	nan	1.462	2.526	0.724	0.719	0.325	0.457	1.343	0.159	0.341	0.199	0.125	1.300	0.834	0.054	0.611	0.764	1.194	1.713	0.316	0.314	3.349	0.989	1.085	1.052	1.197	1.621	2.901	5.484	0.864	0.761	0.396	0.746	0.747	1.047	1.165	2.120	0.678	0.540	1.326	0.324	0.175	0.198	0.457	0.125	0.421	1.221	0.142	0.229
2793	chr14	105137455	105162562	+	0	NA	Intergenic	Intergenic	-5922	NR_039860	100616300		NR_039860	ENSG00000265291	MIR4710	mir-4710	microRNA 4710	ncRNA	3.266	1.312	0.926	1.574	1.408	0.692	1.980	1.004	0.212	0.411	0.234	0.672	1.462	0.709	0.086	1.503	2.105	1.219	1.855	2.999	2.827	3.466	1.354	0.778	0.802	0.728	1.143	4.742	6.854	2.007	1.889	1.137	1.395	0.823	0.920	1.052	1.004	1.816	1.153	3.746	0.349	0.114	0.095	1.980	0.672	0.811	1.469	0.445	0.318
6155	chr5	6448401	6554664	+	0	NA	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	52796	NM_001145161	134111	Hs.126856	NM_001145161	ENSG00000215218	UBE2QL1	-	ubiquitin conjugating enzyme E2 Q family like 1	protein-coding	0.526	0.918	1.741	1.886	0.350	0.193	0.173	0.188	0.190	1.486	0.672	3.748	2.091	0.058	0.099	0.716	0.744	0.873	nan	4.004	4.066	2.686	0.871	0.854	0.904	0.208	0.377	nan	0.684	nan	0.880	0.538	1.138	0.457	0.535	0.294	0.622	3.607	nan	0.231	1.552	0.057	0.390	0.173	3.748	0.056	2.020	0.347	0.049
6387	chr5	98262584	98270054	+	0	NA	non-coding (NR_036530, exon 1 of 1)	non-coding (NR_036530, exon 1 of 1)	1481	NR_036530	100289230	Hs.552095	NR_036530		LOC100289230	-	uncharacterized LOC100289230	ncRNA	nan	4.623	1.767	2.018	3.657	1.973	2.701	2.251	0.184	1.002	0.409	1.407	5.711	3.126	0.121	1.833	2.115	10.734	13.675	4.339	3.787	3.197	1.410	5.894	6.026	2.745	3.467	3.488	6.037	4.634	5.849	1.092	2.688	4.027	3.981	3.099	nan	1.486	0.902	1.215	2.768	1.050	1.149	2.701	1.407	0.350	1.905	0.649	1.469
5865	chr4	38663649	38677295	+	0	NA	intron (NM_016531, intron 1 of 5)	intron (NM_016531, intron 1 of 5)	-4223	NR_026804	79667	Hs.29725	NM_024614	ENSG00000231160	KLF3-AS1	-	KLF3 antisense RNA 1	ncRNA	2.927	3.277	3.401	5.332	8.033	4.819	2.224	1.919	0.189	2.710	1.224	4.429	6.743	3.657	0.119	3.429	5.018	1.956	3.731	3.860	3.255	2.879	1.546	3.749	3.539	2.959	4.014	7.490	6.091	2.256	3.336	1.569	3.413	2.318	2.450	0.231	0.246	3.004	1.728	1.127	4.045	0.747	0.900	2.224	4.429	0.486	1.384	1.187	0.200
7446	chr7	115300995	115325259	+	0	NA	Intergenic	Intergenic	295240	NM_001244583	22797	Hs.125962	NM_012252	ENSG00000105967	TFEC	TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L	transcription factor EC	protein-coding	nan	0.705	0.997	0.127	0.257	0.145	0.642	0.279	0.139	0.284	0.349	0.246	0.268	0.077	0.174	0.405	0.294	0.300	0.706	0.195	0.240	0.129	0.101	0.251	0.246	0.402	0.555	0.426	0.395	0.542	0.223	0.225	0.338	11.894	14.013	0.327	0.857	0.653	0.675	0.060	0.423	3.465	0.047	0.642	0.246	0.032	0.397	0.069	0.102
3590	chr17	77454574	77464547	+	0	NA	intron (NM_001082575, intron 2 of 14)	(CCA)n|Simple_repeat|Simple_repeat	52670	NM_001082575	146713	Hs.135229	NM_001025448	ENSG00000167281	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding protein, fox-1 homolog 3	protein-coding	1.046	0.552	0.861	0.089	0.292	0.104	0.375	0.074	0.106	0.047	0.098	0.036	0.400	0.044	0.074	0.315	0.209	0.069	0.057	3.480	3.608	0.109	0.056	0.092	0.131	nan	1.661	0.102	0.136	6.829	10.348	0.101	0.167	0.063	0.096	0.294	0.476	nan	0.228	0.154	0.079	0.010	0.048	0.375	0.036	0.931	0.041		0.867
1060	chr10	20601873	20612299	+	0	NA	Intergenic	L2a|LINE|L2	-233813	NR_039822	100616383		NR_039822	ENSG00000265372	MIR4675	-	microRNA 4675	ncRNA	0.447	0.564	0.468	0.149	0.161	0.154	0.024	0.128	0.142	0.065	0.063	0.069	0.118	0.073	0.098	0.369	0.262	0.271	0.319	0.141	0.149	9.893	5.297	0.130	0.084	0.322	0.535	0.182	0.213	0.132	0.103	0.091	0.125	0.079	0.112	0.161	0.169	0.148	0.206	0.005	0.017		0.030	0.024	0.069		0.029	0.028	0.036
3759	chr18	40850238	40861020	+	0	NA	intron (NM_020783, intron 1 of 3)	intron (NM_020783, intron 1 of 3)	1986	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin 4	protein-coding	nan	0.821	1.112	6.607	1.828	0.891	1.842	0.034	0.030	1.031	0.758	1.355	3.690	0.006	0.081	0.793	0.700	0.101	0.248	4.142	4.563	7.098	3.716	0.081	0.052	2.610	2.993	6.909	7.857	2.984	2.619	0.030	0.097	3.571	3.285	1.384	nan	6.775	3.391	0.217	0.751	0.607	0.581	1.842	1.355	0.477	2.877	0.009	0.275
2104	chr12	103341697	103366172	+	0	NA	3' UTR (NM_004316, exon 2 of 2)	3' UTR (NM_004316, exon 2 of 2)	2482	NM_004316	429	Hs.703025	NM_004316	ENSG00000139352	ASCL1	ASH1|HASH1|MASH1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding	1.546	3.783	nan	8.288	9.521	5.148	1.919	0.134	0.119	5.975	3.019	7.511	14.604	0.040	0.086	0.183	0.108	0.141	0.181	17.159	14.254	7.101	2.826	0.115	0.133	0.153	0.260	12.639	11.184	0.652	0.449	0.081	0.085	5.191	2.553	0.474	1.101	5.433	2.844	11.692	11.270	0.669	0.178	1.919	7.511	0.091	3.827	0.014	0.091
6171	chr5	10911192	10916069	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-152243	NM_001291963	1611	Hs.75189	NM_004394	ENSG00000112977	DAP	-	death associated protein	protein-coding	nan	nan	nan	0.176	0.061	0.225	0.080	0.200	0.004	0.354	0.185	0.119	nan	0.044	0.140	2.953	2.058	13.492	12.591	0.202	0.572	0.109	0.075	1.567	1.666	nan	1.100	0.242	0.178	0.602	0.258	0.504	1.158	0.162	0.217	0.151	nan	0.943	0.928	0.056	0.145	0.038		0.080	0.119	0.121	0.819	0.309	0.077
2894	chr15	59449461	59463824	+	0	NA	intron (NM_004998, intron 22 of 27)	intron (NM_004998, intron 22 of 27)	6819	NR_031750	100313886		NR_031750	ENSG00000253030	MIR2116	mir-2116	microRNA 2116	ncRNA	1.031	2.413	2.770	0.586	0.365	0.257	0.508	0.222	0.056	0.479	0.323	0.848	7.375	0.098	0.072	0.893	0.864	1.232	1.820	2.290	2.221	1.537	0.279	0.661	0.547	0.271	0.390	4.823	3.763	0.609	0.288	0.631	1.347	1.204	2.019	0.219	0.287	1.060	0.671	2.876	1.639	0.193	0.079	0.508	0.848	0.129	0.546	0.476	0.104
2126	chr12	106720170	106737396	+	0	NA	intron (NM_152772, intron 6 of 9)	intron (NM_152772, intron 6 of 9)	-22653	NM_018082	55703	Hs.62696	NM_018082	ENSG00000013503	POLR3B	C128|HLD8|INMAP|RPC2	RNA polymerase III subunit B	protein-coding	1.568	0.981	nan	0.143	1.358	0.711	0.306	0.265	0.112	0.275	0.317	0.423	1.454	0.069	0.149	0.301	0.256	0.357	0.448	0.841	0.917	0.953	0.427	0.332	0.357	1.396	1.814	0.393	0.469	0.862	0.623	0.211	0.298	3.138	3.485	0.377	0.492	4.495	1.915	0.361	0.415	1.068	0.092	0.306	0.423	0.327	0.035	0.092	0.076
2858	chr15	42556274	42579015	+	0	NA	intron (NM_198141, intron 1 of 23)	intron (NM_198141, intron 1 of 23)	1278	NM_198141	2595	Hs.730806	NM_198141	ENSG00000214013	GANC	-	glucosidase alpha, neutral C	protein-coding	1.611	1.080	nan	0.695	1.263	0.739	0.706	1.029	0.221	0.659	0.519	1.536	1.508	1.155	0.096	5.895	6.716	8.080	5.007	1.748	1.620	1.604	0.646	8.226	8.451	1.346	nan	2.107	2.814	2.636	1.868	5.055	7.637	0.499	0.602	1.163	1.873	1.485	0.868	0.653	0.793	0.109	0.486	0.706	1.536	0.247	0.731	4.213	0.386
4221	chr2	14771888	14777879	+	0	NA	promoter-TSS (NM_001291410)	promoter-TSS (NM_001291410)	-332	NM_001291410	151354	Hs.260855	NM_145175	ENSG00000162981	FAM84A	NSE1|PP11517	family with sequence similarity 84 member A	protein-coding	1.004	1.811	0.831	6.148	0.301	0.170	1.944	0.087	0.055	1.767	1.188	0.783	18.021	0.037	0.049	0.710	0.905	1.891	2.713	6.529	5.396	4.499	1.185	2.282	2.161	1.199	1.517	8.316	10.241	2.887	4.196	1.684	3.121	1.464	1.089	1.784	nan	1.560	0.935	3.430	3.316	0.258	0.846	1.944	0.783	0.146	5.476	1.070	0.761
2526	chr14	30388816	30400145	+	0	NA	intron (NM_001330069, intron 1 of 18)	intron (NM_001330069, intron 1 of 18)	2419	NM_002742	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding	2.224	1.140	1.393	0.950	0.900	0.595	0.643	2.135	0.286	0.321	0.436	1.183	2.977	1.072	0.111	0.288	0.303	0.754	1.224	2.176	1.786	1.944	0.776	0.497	0.567	4.393	4.855	0.899	1.308	1.957	1.739	0.163	0.480	1.249	1.387	0.349	0.503	1.010	0.636	0.588	0.353	0.320	0.510	0.643	1.183	0.180	1.066	0.087	0.109
972	chr1	245910699	245916209	+	0	NA	intron (NM_001167740, intron 11 of 11)	L2|LINE|L2	595167	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding	nan	1.125	nan	0.187	0.390	0.331	0.418	0.455	0.174	0.177	0.164	0.180	0.376	0.100	0.097	1.218	0.674	12.028	2.219	0.731	0.693	0.569	0.255	3.643	3.078	0.351	0.573	0.408	0.443	0.367	0.236	0.304	0.455	0.073	0.182	0.438	0.765	0.467	0.351	0.082	0.226	0.018	0.048	0.418	0.180	0.052	0.037	0.252	0.223
7787	chr8	92603686	92645945	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	363299	NM_134266	115111	Hs.354013	NM_052832	ENSG00000147606	SLC26A7	SUT2	solute carrier family 26 member 7	protein-coding	nan	0.850	1.323	0.208	0.357	0.148	0.110	0.380	0.125	0.052	0.063	0.147	0.369	0.038	0.079	0.264	0.140	0.390	nan	0.426	0.539	0.308	0.107	0.189	0.176	1.149	1.487	0.788	0.795	1.590	1.225	0.165	0.192	0.422	0.433	1.181	3.561	0.351	0.304	0.062	0.107	0.107	0.074	0.110	0.147	0.222	0.081	0.061	3.057
8397	chrX	99970529	99987428	+	0	NA	intron (NM_080737, intron 1 of 18)	SVA_D|Other|Other	7544	NM_080737	94121	Hs.592224	NM_080737	ENSG00000102362	SYTL4	SLP4	synaptotagmin like 4	protein-coding	1.207	1.436	0.931	0.540	0.285	0.124	1.057	0.045	0.085	0.138	0.176	0.110	2.508	0.192	0.169	0.128	0.102	0.411	0.491	1.020	0.834	1.416	0.593	0.232	0.159	0.570	0.831	0.443	0.377	6.186	6.564	0.099	0.158	2.188	3.328	0.451	1.351	0.088	0.060	0.033	0.341	1.123	0.184	1.057	0.110	0.633	0.054	0.023	1.644
3	chr1	839570	862084	+	0	NA	Intergenic	Intergenic	4245	NR_026874	100130417	Hs.200644	NM_175912	ENSG00000223764	LOC100130417	-	uncharacterized LOC100130417	ncRNA	1.286	nan	1.253	0.355	0.406	0.271	0.896	0.240	0.154	0.195	0.173	1.281	1.593	1.116	0.114	1.716	3.060	1.021	1.540	1.077	0.957	1.217	0.247	1.974	2.051	2.101	nan	nan	1.679	nan	0.391	1.902	3.944	0.523	0.370	0.941	1.415	1.344	0.878	0.439	0.924	0.166	4.607	0.896	1.281	0.431	0.619	2.598	0.269
7802	chr8	95903804	95913691	+	0	NA	Intergenic	CpG-25869	-1265	NM_057749	9134	Hs.521693	NM_004702	ENSG00000175305	CCNE2	CYCE2	cyclin E2	protein-coding	nan	3.030	4.505	6.443	5.950	2.953	2.351	1.848	0.264	1.313	0.600	5.499	14.751	1.161	0.079	3.659	3.336	3.769	nan	8.751	8.199	4.463	2.988	3.379	3.673	3.570	4.671	11.022	14.948	4.977	5.203	1.861	3.685	5.641	6.650	3.550	3.096	3.114	1.635	5.321	5.324	1.676	2.982	2.351	5.499	0.436	2.439	1.294	1.189
5643	chr3	168285348	168324025	+	0	NA	intron (NR_021485, intron 4 of 15)	L1MA8|LINE|L1	35044	NR_030294	693136		NR_030294	ENSG00000207717	MIR551B	MIRN551B|mir-551b	microRNA 551b	ncRNA	1.045	1.042	0.802	0.149	0.293	0.172	0.225	0.187	0.149	0.187	0.248	0.061	0.134	0.082	0.078	0.306	0.263	0.168	0.316	0.341	0.424	2.998	1.108	0.232	0.220	0.969	1.276	nan	0.623	nan	0.280	0.142	0.191	0.700	0.690	0.407	0.685	0.618	0.548	0.023	0.076	0.134	0.086	0.225	0.061	0.013	0.034	0.036	0.116
248	chr1	40625548	40629642	+	0	NA	intron (NM_012421, intron 1 of 7)	CpG	554	NM_012421	6018	Hs.205627	NM_012421	ENSG00000117000	RLF	ZN-15L|ZNF292L	rearranged L-myc fusion	protein-coding	28.302	2.441	nan	15.549	2.979	2.272	69.384	1.882	0.366	2.411	1.024	5.641	4.297	1.984	0.108	3.690	3.825	4.535	6.203	8.464	7.927	4.347	2.530	10.251	10.949	3.851	nan	nan	14.021	4.927	6.152	5.680	nan	1.784	1.877	4.944	5.535	63.995	48.029	0.840	1.500	0.118	16.497	69.384	5.641	0.595	0.856	1.942	1.328
5608	chr3	152177449	152182002	+	0	NA	intron (NM_207292, intron 8 of 8)	intron (NM_207292, intron 8 of 8)	-120946	NR_132656	645843	Hs.632562	NM_001123228		TMEM14EP	TMEM14E	transmembrane protein 14E, pseudogene	pseudo	nan	1.005	0.851	0.217	0.635	0.140	0.198	0.333	0.213	0.277	0.365	0.116	0.220	0.072	0.132	2.912	2.906	3.360	1.405	0.435	0.515	0.461	0.308	0.348	0.361	0.786	nan	0.360	0.372	0.787	0.338	8.687	7.313	0.082	0.102	0.287	0.818	0.988	0.546	0.025	0.175		0.175	0.198	0.116		0.058	1.458	0.128
802	chr1	204025628	204079942	+	0	NA	intron (NM_005686, intron 1 of 13)	intron (NM_005686, intron 1 of 13)	10539	NM_005686	9580	Hs.201671	NM_005686	ENSG00000143842	SOX13	ICA12|Sox-13	SRY-box 13	protein-coding	1.419	2.229	1.415	2.616	3.325	1.755	1.435	0.665	0.237	0.717	0.338	2.867	2.952	0.183	0.105	2.955	4.103	4.546	4.226	2.668	2.800	2.977	0.806	nan	nan	0.289	0.565	2.829	2.863	0.506	0.367	1.344	2.363	0.976	0.722	0.401	0.828	1.511	0.809	0.936	2.302	0.120	0.423	1.435	2.867	0.134	0.144	1.391	0.102
3924	chr19	373123	389846	+	0	NA	Intergenic	Intergenic	-5471	NM_199202	51298	Hs.250002	NM_016585	ENSG00000105549	THEG	CT56|THEG1	theg spermatid protein	protein-coding	0.724	0.960	3.809	0.210	0.757	0.306	0.242	0.045	0.067	0.200	0.073	0.802	0.965	0.032	0.091	0.409	0.597	0.179	0.298	2.945	2.699	0.836	0.133	0.218	0.282	0.222	0.500	4.096	nan	0.872	0.786	0.352	0.410	0.531	0.791	0.897	1.562	1.775	1.077	1.353	1.123	0.040	0.099	0.242	0.802	0.569	0.085	0.302	0.200
3420	chr17	42967857	42989070	+	0	NA	exon (NM_001258395, exon 2 of 4)	exon (NM_001258395, exon 2 of 4)	1383	NM_001258397	388389	Hs.743398	NM_213607	ENSG00000167131	CCDC103	CILD17|PR46b|SMH	coiled-coil domain containing 103	protein-coding	2.030	1.815	nan	1.234	1.364	0.918	0.883	0.665	0.147	0.547	0.276	0.785	2.107	0.697	0.125	1.829	1.847	1.864	2.565	1.790	nan	1.785	1.338	3.236	3.577	1.433	2.012	2.319	nan	4.441	4.821	1.653	2.088	2.629	3.958	2.074	1.865	1.147	0.767	0.614	0.772	0.506	0.365	0.883	0.785	0.594	0.745	0.405	0.473
8097	chr9	27116819	27127241	+	0	NA	intron (NM_001290078, intron 1 of 20)	intron (NM_001290078, intron 1 of 20)	12891	NM_000459	7010	Hs.89640	NM_000459	ENSG00000120156	TEK	CD202B|TIE-2|TIE2|VMCM|VMCM1	TEK receptor tyrosine kinase	protein-coding	0.735	nan	nan	0.485	0.720	0.416	0.454	0.270	0.171	1.327	0.371	0.257	1.011	0.177	0.059	0.148	0.149	0.224	0.367	0.423	0.274	2.422	1.131	0.153	0.132	0.803	1.308	0.260	0.312	0.426	0.155	0.080	0.161	0.921	0.961	0.286	0.565	3.915	2.370	0.024	0.042	0.136	0.398	0.454	0.257		0.479	0.086	0.295
5130	chr21	40927192	40941175	+	0	NA	Intergenic	Intergenic	50566	NR_026543	114041	Hs.375120	NM_153754	ENSG00000184809	B3GALT5-AS1	C21orf88	B3GALT5 antisense RNA 1	ncRNA	nan	0.903	1.429	0.100	0.523	0.161	0.500	0.113	0.080	0.189	0.102	0.409	6.115	0.031	0.078	1.541	2.262	0.724	1.162	0.661	0.734	nan	0.230	0.326	0.297	0.159	nan	0.710	0.660	0.795	0.702	0.334	0.469	0.744	0.638	0.322	0.516	1.952	1.093	2.309	0.130	0.075	0.102	0.500	0.409	0.049	0.117	0.135	0.192
3269	chr17	8073175	8080980	+	0	NA	3' UTR (NM_032354, exon 5 of 5)	3' UTR (NM_032354, exon 5 of 5)	2637	NM_183065	84314	Hs.513933	NM_032354	ENSG00000179029	TMEM107	GRVS638|PRO1268	transmembrane protein 107	protein-coding	3.075	2.077	2.284	2.175	3.993	1.957	2.231	0.756	0.154	0.833	0.635	2.762	5.961	1.110	0.089	5.607	6.294	4.566	6.514	5.675	6.408	5.877	4.810	3.779	4.376	2.057	2.625	4.891	6.597	2.891	2.791	3.760	4.683	2.052	2.914	5.790	6.935	0.867	0.416	2.990	1.763	0.327	0.896	2.231	2.762	1.310	2.986	1.597	1.696
2632	chr14	60617800	60633173	+	0	NA	intron (NM_001322280, intron 1 of 6)	L3|LINE|CR1	6725	NM_001322282	51635	Hs.59719	NM_016029	ENSG00000100612	DHRS7	CGI-86|SDR34C1|retDSR4|retSDR4	dehydrogenase/reductase 7	protein-coding	nan	nan	2.200	2.339	1.583	0.922	2.089	0.818	0.105	0.531	0.451	1.222	3.057	0.409	0.131	1.235	1.672	0.867	1.451	2.658	2.488	2.353	0.877	nan	3.168	1.268	1.874	3.692	nan	3.951	3.057	1.111	2.025	3.540	4.304	1.054	2.369	1.698	0.978	0.582	1.958	0.905	3.105	2.089	1.222	0.528	0.592	0.781	0.972
5684	chr3	174798165	174816997	+	0	NA	intron (NR_046390, intron 2 of 3)	intron (NR_046390, intron 2 of 3)	25451	NR_046390	100862679	Hs.148810	NR_046390	ENSG00000230292	NAALADL2-AS3	-	NAALADL2 antisense RNA 3	ncRNA	1.362	1.169	1.107	0.189	0.835	0.500	0.192	0.334	0.171	0.507	0.430	0.280	0.326	0.039	0.079	0.308	0.219	0.493	0.663	0.386	0.535	0.824	0.244	0.385	0.368	3.954	3.961	0.511	0.369	1.120	0.369	0.143	0.224	0.717	0.762	0.775	1.675	0.815	0.493	0.323	0.076	0.207	0.121	0.192	0.280	0.239	0.086	0.031	0.334
6261	chr5	51546429	51569647	+	0	NA	Intergenic	L1MB3|LINE|L1	-525736	NM_015946	53918	Hs.644352	NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota homolog (Drosophila)	protein-coding	nan	nan	0.691	0.174	9.118	4.795	2.775	0.099	0.111	0.856	0.799	2.260	0.826	0.052	0.112	0.182	0.086	0.300	0.270	7.200	8.296	nan	1.427	0.075	0.113	0.566	0.685	0.417	0.561	nan	0.392	0.100	0.104	2.374	2.750	0.511	1.452	4.987	2.169	6.129	0.786	0.534	0.109	2.775	2.260	0.013	0.035	0.004	0.175
6243	chr5	42947671	42953865	+	0	NA	Intergenic	Intergenic	42667	NR_104643	643977	Hs.535791	NR_104643		FLJ32255	-	uncharacterized LOC643977	ncRNA	0.605	7.860	0.994	0.405	0.200	0.077	0.226	3.587	0.471	0.454	0.302	1.311	10.300	4.304	0.156	0.209	0.130	0.317	0.767	0.273	0.332	0.044	0.125	0.622	0.833	0.164	0.397	0.727	0.902	0.678	0.410	0.801	1.292	0.053	0.081	0.080	0.129	0.330	0.272	4.993	9.562	0.031	1.127	0.226	1.311		4.741	0.328	0.039
8349	chr9	140957389	140970226	+	0	NA	intron (NM_000718, intron 31 of 45)	intron (NM_000718, intron 31 of 45)	-24284	NR_121582	101928786	Hs.678847	NR_121582		LOC101928786	-	uncharacterized LOC101928786	ncRNA	0.627	0.593	0.582	0.130	0.328	0.137	0.259	0.068	0.088	0.048	0.115	0.139	0.418	0.017	0.069	3.778	4.342	3.475	nan	0.663	nan	0.272	0.145	8.222	8.347	0.155	0.300	0.320	0.454	0.505	0.466	7.733	9.170	0.131	0.098	0.203	0.457	0.429	0.328	0.074	0.140	0.015	0.049	0.259	0.139	0.127	0.048	4.780	0.136
4869	chr20	18644537	18662522	+	0	NA	intron (NM_080820, intron 4 of 5)	intron (NM_080820, intron 4 of 5)	25823	NR_109955	101929526	Hs.639402	NR_109955	ENSG00000233993	LOC101929526	-	uncharacterized LOC101929526	ncRNA	1.731	nan	1.020	0.753	3.493	1.757	0.882	0.166	0.098	0.245	0.233	4.436	1.252	0.042	0.065	1.277	1.997	0.249	0.349	4.619	4.952	3.332	1.312	0.367	0.353	1.449	2.083	5.765	5.836	2.909	2.840	0.348	0.644	0.706	0.475	1.047	2.304	1.832	1.214	1.336	1.069	0.153	2.025	0.882	4.436	0.428	0.085	0.330	0.803
2812	chr14	106932550	106944784	+	0	NA	intron (NR_027457, intron 1 of 2)	CpG	222	NR_027457	338005	Hs.322826	NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA	0.819	0.528	0.468	0.054	0.271	0.200	0.477	0.502	0.130	0.055	0.061	0.506	0.364	0.070	0.131	0.344	0.353	0.100	0.156	0.451	0.512	10.533	4.314	0.398	0.334	0.646	1.072	2.994	4.065	0.283	0.124	0.104	0.327	1.239	1.372	0.056	0.102	0.083	0.093	0.019	0.405	0.297	0.032	0.477	0.506	0.024	1.179	0.049	0.010
6361	chr5	90957633	90967532	+	0	NA	Intergenic	LTR33|LTR|ERVL	-283392	NR_138072	57561	Hs.24684	NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding	nan	1.631	0.643	0.141	0.573	0.301	0.440	0.082	0.114	0.080	0.097		0.298	0.088	0.123	0.318	0.159	8.378	0.857	0.950	0.887	0.409	0.140	0.446	0.480	0.330	0.440	0.628	0.509	0.502	0.233	0.088	0.121	0.724	0.564	0.465	nan	0.399	0.359	0.099	0.961	0.087	0.024	0.440		0.039	0.238	0.030	0.187
560	chr1	154578976	154581903	+	0	NA	intron (NM_001025107, intron 1 of 14)	CpG	285	NM_015840	103	Hs.12341	NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase, RNA specific	protein-coding	nan	6.014	6.226	4.369	6.030	2.856	6.049	9.600	1.558	5.249	2.834	6.048	19.986	8.649	0.407	4.371	4.844	10.496	16.525	13.667	12.566	8.876	3.087	5.334	5.814	2.986	5.075	10.129	16.912	7.383	7.102	13.107	15.570	6.957	7.722	0.783	0.959	4.249	2.194	5.450	12.924	1.011	3.032	6.049	6.048	0.823	3.649	7.247	0.168
2830	chr15	31548453	31575133	+	0	NA	Intergenic	Intergenic	-38739	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding	1.200	nan	nan	0.805	0.906	0.505	0.471	0.134	0.102	1.452	0.752	1.860	3.118	0.036	0.070	1.885	2.758	0.525	1.000	3.140	4.021	1.249	0.378	0.240	0.258	0.392	0.603	1.473	1.549	5.184	5.456	0.799	0.951	2.337	1.997	0.824	1.903	0.551	0.379	1.340	0.648	1.047	0.679	0.471	1.860	0.963	1.303	0.549	0.845
798	chr1	203741196	203747256	+	0	NA	3' UTR (NM_001136190, exon 5 of 5)	3' UTR (NM_001136190, exon 5 of 5)	5460	NM_001282878	54900	Hs.272794	NM_017773	ENSG00000122188	LAX1	LAX	lymphocyte transmembrane adaptor 1	protein-coding	1.287	1.032	1.083	0.066	0.382	0.158	0.190	0.274	0.133	0.181	0.258	0.223	0.407	0.107	0.122	3.359	3.652	9.142	5.269	0.411	0.491	0.543	0.330	nan	nan	0.763	1.171	0.427	0.428	0.358	0.192	1.119	1.319	0.225	0.247	0.315	0.734	0.667	0.453	0.018	0.203	0.048	0.091	0.190	0.223	0.064	0.050	0.976	0.198
898	chr1	226308062	226324863	+	0	NA	Intergenic	Intergenic	57961	NM_022735	64746	Hs.520207	NM_022735	ENSG00000182827	ACBD3	GCP60|GOCAP1|GOLPH1|PAP7	acyl-CoA binding domain containing 3	protein-coding	3.113	nan	6.076	1.822	3.765	1.813	3.229	0.397	0.178	2.374	0.979	2.297	2.675	0.981	0.077	2.001	2.527	3.018	4.489	3.735	nan	3.839	1.052	3.257	3.138	1.575	2.274	3.950	4.927	1.502	1.636	1.012	1.628	3.262	2.572	1.294	1.336	2.263	1.436	2.302	0.868	0.845	0.471	3.229	2.297	0.502	1.973	0.595	0.287
3670	chr18	13159621	13167334	+	0	NA	Intergenic	MER34B-int|LTR|ERV1	-55252	NM_181482	753	Hs.731853	NM_004338	ENSG00000168675	LDLRAD4	C18orf1	low density lipoprotein receptor class A domain containing 4	protein-coding	1.909	1.959	0.853	2.962	0.227	0.177	0.117	0.126	0.188	0.123	0.075	6.450	2.691	0.042	0.092	0.597	0.814	0.379	0.553	15.389	14.431	0.844	0.250	0.327	0.308	0.094	0.282	0.873	0.777	3.745	4.278	0.236	0.272	1.382	0.681	0.522	1.130	1.092	0.886	1.257	1.382	0.186	2.512	0.117	6.450	0.578	0.484	0.076	0.371
7391	chr7	95864619	95882874	+	0	NA	intron (NM_014251, intron 3 of 17)	intron (NM_014251, intron 3 of 17)	-24678	NR_030322	693176		NR_030322	ENSG00000208025	MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA	nan	0.688	nan	0.107	3.358	1.911	0.713	0.184	0.080	0.809	0.764	0.845	0.452	0.048	0.191	0.570	0.585	1.524	2.091	1.178	1.298	1.473	1.256	0.327	0.339	1.967	2.736	0.267	0.317	0.392	0.302	0.453	1.030	2.793	3.406	0.330	nan	0.979	0.808	0.143	0.216	0.831	0.224	0.713	0.845	0.091	0.088	0.330	0.165
7239	chr7	30588324	30604880	+	0	NA	intron (NR_038889, intron 5 of 6)	L2b|LINE|L2	20793	NR_038889	401320	Hs.561708	NR_038889		LOC401320	-	uncharacterized LOC401320	ncRNA	1.868	3.875	2.315	0.396	0.967	0.522	6.098	0.450	0.078	0.965	0.570	1.806	6.650	0.132	0.197	0.803	0.833	1.379	1.938	1.242	nan	6.271	3.894	0.696	0.772	0.957	nan	nan	nan	0.608	0.453	0.439	0.812	2.901	3.565	0.410	nan	2.260	1.504	0.582	0.632	0.735	1.048	6.098	1.806	0.319	0.289	0.387	0.199
1273	chr11	869386	898921	+	0	NA	exon (NM_023947, exon 9 of 13)	exon (NM_023947, exon 9 of 13)	26721	NM_001142677	66005	Hs.144468	NM_023947	ENSG00000177830	CHID1	GL008|SI-CLP|SICLP	chitinase domain containing 1	protein-coding	0.761	0.627	4.178	0.077	0.245	0.141	0.229	0.109	0.055	0.117	0.110	0.224	0.450	0.066	0.047	0.660	1.131	0.310	0.387	0.780	0.825	0.392	0.187	0.511	0.492	0.491	0.871	0.230	0.369	1.803	2.092	0.405	0.397	0.198	0.249	0.429	0.660	0.614	0.365	0.284	0.228	0.048	0.083	0.229	0.224	0.187	0.038	0.064	0.253
451	chr1	112444342	112454167	+	0	NA	intron (NM_004980, intron 2 of 7)	intron (NM_004980, intron 2 of 7)	-3025	NR_046619	100873995	Hs.535274	NR_046619	ENSG00000237556	KCND3-AS1	-	KCND3 antisense RNA 1	ncRNA	nan	0.973	1.169	0.731	0.967	0.594	1.425	0.114	0.249	0.300	0.143	0.062	2.062	0.057	0.089	0.452	0.795	0.189	0.205	3.068	nan	4.931	1.402	0.188	0.204	1.454	2.175	2.847	3.565	2.635	3.518	0.579	0.786	0.043	0.096	0.555	1.970	3.272	1.923	5.007	4.967	0.039	0.218	1.425	0.062	1.263	0.912	0.283	0.598
7573	chr8	1425228	1436949	+	0	NA	intron (NM_001346810, intron 3 of 14)	CpG	-18444	NM_001277161	9228	Hs.113287	NM_004745	ENSG00000198010	DLGAP2	DAP2|SAPAP2	DLG associated protein 2	protein-coding	0.359	0.966	0.460	0.022	0.119	0.150	2.103	0.070	0.068	0.119	0.111	1.119	0.097	0.083	0.155	0.786	1.353	1.132	0.634	2.436	1.809	0.164	0.067	0.136	0.155	0.067	0.089	0.088	0.112	nan	0.277	0.495	0.856	0.100	0.113	0.093	0.126	0.476	0.476	6.620	0.311	0.008	0.034	2.103	1.119		0.043	0.511	0.064
7632	chr8	29606746	29635797	+	0	NA	intron (NR_125814, intron 1 of 3)	L1PA3|LINE|L1	15446	NR_125816	101929450	Hs.512440	NR_125814	ENSG00000253490	LINC02099	-	long intergenic non-protein coding RNA 2099	ncRNA	nan	2.222	nan	0.725	2.324	1.130	0.777	0.506	0.161	0.389	0.228	3.002	5.470	0.022	0.103	0.445	0.456	0.480	1.445	nan	3.352	nan	1.088	0.158	0.163	0.841	0.992	3.921	3.526	1.890	1.855	0.138	0.147	2.325	2.903	0.808	2.544	nan	nan	2.680	0.474	0.677	0.171	0.777	3.002	0.332	1.651	0.020	0.729
6227	chr5	33935064	33943583	+	0	NA	TTS (NM_016568)	TTS (NM_016568)	2832	NM_016568	51289	Hs.170146	NM_016568	ENSG00000182631	RXFP3	GPCR135|RLN3R1|RXFPR3|SALPR	relaxin/insulin like family peptide receptor 3	protein-coding	0.544	1.348	nan	2.531	0.143	0.131	0.147	0.140	0.209	0.389	0.253	0.202	15.523	0.026	0.063	0.338	0.247	0.103	0.142	0.694	0.727	1.429	0.462	0.119	0.115	0.392	0.621	0.323	0.331	1.175	0.829	0.200	0.259	0.096	0.141	0.183	0.344	1.912	1.413	0.039	2.017	0.033	0.252	0.147	0.202	0.079	0.072	0.046	0.087
2448	chr13	111521159	111527663	+	0	NA	Intergenic	Intergenic	-1756	NR_027701	283487	Hs.245390	NM_178514	ENSG00000255874	LINC00346	C13orf29|NCRNA00346	long intergenic non-protein coding RNA 346	ncRNA	1.174	nan	0.905	2.111	0.440	0.174	2.181	0.820	0.295	0.071	0.053	0.789	0.906	0.322	0.115	0.699	1.064	0.785	1.731	0.646	0.814	8.616	6.913	0.260	0.374	0.166	0.198	0.629	1.123	0.598	0.267	0.616	0.819	1.162	3.794	0.400	0.588	0.224	0.102	0.285	0.477	0.044	0.338	2.181	0.789	0.058	0.706	0.200	0.120
2969	chr15	80675098	80712749	+	0	NA	Intergenic	Intergenic	-2769	NM_014862	9915	Hs.459070	NM_014862	ENSG00000172379	ARNT2	WEDAS|bHLHe1	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.908	nan	0.677	0.227	0.584	0.414	0.349	0.107	0.086	0.267	0.209	0.699	0.999	0.324	0.085	3.323	3.200	6.220	4.477	0.955	0.916	1.023	0.440	6.534	6.793	0.650	1.010	0.793	1.447	1.136	0.969	0.875	1.262	0.152	0.140	0.216	0.223	0.552	0.398	0.177	0.190	0.023	0.198	0.349	0.699	0.134	0.313	0.420	0.102
7898	chr8	120219565	120225543	+	0	NA	intron (NM_052886, intron 2 of 4)	intron (NM_052886, intron 2 of 4)	1944	NM_052886	114569	Hs.201083	NM_052886	ENSG00000147676	MAL2	-	mal, T-cell differentiation protein 2 (gene/pseudogene)	protein-coding	nan	nan	nan	5.948	2.606	1.446	0.107	0.161	0.107	1.260	0.472	3.008	nan	0.018	0.091	0.316	0.233	2.879	3.767	5.856	5.444	7.562	2.866	19.492	20.500	0.275	0.437	3.705	5.181	1.329	1.346	2.595	4.628	3.539	3.336	0.124	0.299	1.983	1.524	1.962	3.611	0.444	1.583	0.107	3.008	0.388	0.255	1.088	0.062
4557	chr2	157737608	157750902	+	0	NA	Intergenic	Intergenic	-369855	NM_014568	11227	Hs.269027	NM_014568	ENSG00000136542	GALNT5	GALNAC-T5|GALNACT5	polypeptide N-acetylgalactosaminyltransferase 5	protein-coding	nan	0.903	nan	1.587	3.005	1.435	0.498	0.147	0.108	0.308	0.150	0.369	1.223	0.048	0.081	0.570	0.739	1.107	0.991	0.570	0.590	5.917	1.854	0.348	0.408	1.151	1.317	0.881	0.952	0.509	0.262	0.329	0.635	0.091	0.099	0.377	0.898	0.455	0.385	0.021	0.148		0.410	0.498	0.369	0.080	1.495	0.216	0.111
2721	chr14	88096744	88112260	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	355113	NM_001201401	2581	Hs.513439	NM_000153	ENSG00000054983	GALC	-	galactosylceramidase	protein-coding	nan	0.614	0.794	0.102	0.308	0.165	0.206	0.130	0.093	0.071	0.048	0.093	0.393	0.043	0.094	0.259	0.150	0.305	0.289	0.430	0.477	0.114	0.049	0.397	0.339	3.211	3.777	0.239	0.234	3.665	3.130	0.160	0.239	0.079	0.120	0.248	0.516	0.468	0.624	3.797	0.046	0.049	0.080	0.206	0.093	0.219	0.031	0.075	0.297
3595	chr17	77960561	77972208	+	0	NA	intron (NM_019020, intron 3 of 11)	intron (NM_019020, intron 3 of 11)	-41728	NM_001271846	125058	Hs.369819	NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding	1.902	2.494	1.714	3.895	6.582	3.360	1.686	0.509	0.188	0.596	0.303	2.715	7.351	1.182	0.073	1.310	1.920	0.684	1.039	1.464	1.345	2.726	0.958	1.202	1.436	nan	0.884	4.423	4.270	1.158	0.926	2.278	2.866	2.284	4.071	0.580	1.853	nan	0.917	2.485	3.936	0.429	0.999	1.686	2.715	1.002	2.442	1.528	0.224
4788	chr2	241368695	241383882	+	0	NA	intron (NM_002081, intron 1 of 8)	CpG	1173	NM_002081	2817	Hs.328232	NM_002081	ENSG00000063660	GPC1	glypican	glypican 1	protein-coding	1.296	nan	1.790	0.551	0.638	0.260	0.859	0.303	0.096	0.146	0.164	1.188	2.311	0.700	0.090	1.957	2.558	0.698	1.019	1.559	1.162	0.760	0.212	0.639	0.625	0.447	0.848	0.832	1.121	1.425	2.027	0.669	0.880	0.329	0.280	0.321	0.365	0.225	0.192	4.132	0.845	0.075	0.162	0.859	1.188	0.404	0.761	0.171	0.106
4909	chr20	30269457	30314145	+	0	NA	intron (NR_134257, intron 1 of 2)	AluSx|SINE|Alu	-17509	NR_131907	103021294		NR_131907	ENSG00000281376	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA	ncRNA	1.997	4.252	1.785	3.876	2.963	1.598	29.204	1.820	0.326	1.814	0.978	3.565	6.998	1.096	0.117	1.992	2.738	1.536	3.872	3.909	nan	6.062	2.350	3.987	4.297	2.120	2.767	5.553	6.658	2.998	2.465	1.291	2.207	2.632	3.157	1.324	nan	1.557	0.806	5.575	3.473	1.242	2.003	29.204	3.565	1.354	1.007	1.726	1.284
4384	chr2	64255108	64264572	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-13626	NM_016516	51542	Hs.48499	NM_016516	ENSG00000143952	VPS54	HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L	VPS54, GARP complex subunit	protein-coding	0.833	1.208	nan	0.257	0.863	0.455	1.624	0.253	0.035	0.148	0.226	0.288	1.104	0.057	0.163	0.385	0.213	0.180	0.292	0.857	1.128	nan	0.786	0.368	0.425	0.347	0.363	1.915	1.962	0.423	0.168	0.203	0.429	1.320	2.404	0.434	1.683	4.219	2.057	0.327	2.648	0.262	0.394	1.624	0.288	0.031	0.119	0.356	0.187
3331	chr17	26277279	26326291	+	0	NA	Intergenic	Intergenic	-67903	NM_016231	51701	Hs.208759	NM_016231	ENSG00000087095	NLK	-	nemo like kinase	protein-coding	nan	nan	nan	0.120	0.489	0.235	0.188	0.080	0.088	0.089	0.083	0.154	0.439	0.051	0.118	1.018	1.481	0.322	0.287	0.315	0.384	0.168	0.069	0.392	0.422	0.191	0.335	0.491	0.482	2.931	2.294	1.210	1.831	0.155	0.168	1.402	nan	0.680	0.548	0.015	0.077	0.041	0.061	0.188	0.154	0.040	0.095	0.707	4.034
5335	chr3	17448142	17474638	+	0	NA	intron (NM_014744, intron 4 of 21)	AluJr|SINE|Alu	280122	NM_001134381	9779	Hs.475629	NM_014744	ENSG00000131374	TBC1D5	-	TBC1 domain family member 5	protein-coding	nan	0.863	0.770	0.134	0.224	0.097	0.058	0.113	0.073	0.090	0.094	0.041	0.203	0.055	0.102	0.198	0.199	0.222	0.368	0.296	0.416	0.645	0.269	0.190	0.212	0.704	0.792	0.565	0.480	0.613	0.251	0.144	0.212	1.703	2.695	0.759	1.961	0.554	0.377	0.029	0.064	0.475	0.058	0.058	0.041	0.015	0.084	0.038	0.725
5148	chr21	44072804	44095066	+	0	NA	intron (NM_001001580, intron 1 of 13)	intron (NM_001001580, intron 1 of 13)	10073	NM_001001572	5152	Hs.473927	NM_002606	ENSG00000160191	PDE9A	HSPDE9A2	phosphodiesterase 9A	protein-coding	nan	0.739	2.555	0.403	0.598	0.349	1.122	0.058	0.088	0.296	0.199	1.090	1.035	0.364	0.097	2.085	3.345	0.813	0.874	1.407	1.374	nan	0.361	0.866	0.833	0.673	nan	1.267	1.870	1.410	1.642	1.073	1.699	0.764	0.574	0.792	1.154	1.488	0.854	0.258	0.132	0.123	0.293	1.122	1.090	0.797	0.063	1.208	0.419
540	chr1	151510857	151515609	+	0	NA	intron (NM_001126337, intron 1 of 11)	intron (NM_001126337, intron 1 of 11)	448	NM_001301317	7286	Hs.489922	NM_020127	ENSG00000143367	TUFT1	-	tuftelin 1	protein-coding	nan	nan	7.954	2.828	2.638	1.247	1.480	1.614	0.475	3.986	1.377	6.117	20.893	0.820	0.176	3.565	4.896	3.493	6.730	8.784	nan	8.967	3.794	9.620	9.972	1.364	1.721	7.126	9.365	1.712	2.134	3.572	8.137	3.750	3.676	1.611	4.924	2.611	1.577	4.708	9.387	0.832	1.183	1.480	6.117	0.816	3.238	3.384	0.727
6673	chr6	25980514	25994833	+	0	NA	TTS (NM_006355)	TTS (NM_006355)	24756	NM_006355	10475	Hs.584851	NM_006355	ENSG00000112343	TRIM38	RNF15|RORET	tripartite motif containing 38	protein-coding	1.520	1.501	nan	1.949	0.563	0.410	0.591	0.979	0.225	0.591	0.431	1.404	nan	1.081	0.107	1.697	1.935	0.545	nan	1.626	1.296	nan	1.870	1.401	1.525	0.976	1.221	3.995	4.567	0.893	0.715	0.584	1.016	1.555	1.145	1.054	2.222	1.730	1.104	0.326	0.862	0.192	0.465	0.591	1.404	0.129	1.058	0.589	0.753
1615	chr11	107459131	107467447	+	0	NA	intron (NR_028328, intron 2 of 2)	intron (NR_028328, intron 2 of 2)	818	NR_028328	643923	Hs.730145	NM_001039772	ENSG00000110675	LOC643923	-	uncharacterized LOC643923	ncRNA	0.829	0.596	0.622	0.180	0.313	0.176	0.062	0.037	0.058	0.173	0.169	0.101	0.716	0.130	0.072	5.063	9.100	1.055	1.304	0.755	0.717	0.516	0.133	0.579	0.550	0.488	0.991	0.480	0.470	1.065	0.871	0.808	1.683	0.141	0.231	0.395	0.674	0.309	0.288	0.093	0.087		0.162	0.062	0.101	0.081	0.085	0.293	0.180
3065	chr16	15733206	15740218	+	0	NA	promoter-TSS (NM_001143979)	promoter-TSS (NM_001143979)	311	NM_014647	9665	Hs.173524	NM_014647	ENSG00000166783	KIAA0430	LKAP|MARF1|PPP1R34	KIAA0430	protein-coding	2.671	3.138	nan	5.571	4.122	2.050	2.390	2.672	0.233	1.902	0.962	3.305	11.219	4.287	0.223	3.017	2.781	2.006	2.822	4.175	3.794	8.204	3.720	6.355	7.204	2.766	3.715	10.257	15.666	nan	4.762	2.217	3.209	4.636	6.895	2.392	3.757	3.130	1.232	2.128	1.752	1.263	1.516	2.390	3.305	1.222	1.129	1.926	1.389
7959	chr8	140609288	140624933	+	0	NA	intron (NR_104210, intron 3 of 3)	intron (NR_104210, intron 3 of 3)	98189	NR_104210	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding	1.519	1.922	nan	0.307	0.267	0.112	2.311	0.052	0.083	0.130	0.084	0.260	9.358	0.035	0.063	0.223	0.206	0.134	0.169	nan	1.046	nan	0.385	0.190	0.180	0.150	0.286	0.473	0.507	3.358	3.339	0.187	0.196	0.215	0.341	0.669	1.547	0.690	0.482	2.460	1.543	0.042	0.409	2.311	0.260	0.587	0.207	0.045	0.887
2073	chr12	89840540	89856895	+	0	NA	intron (NR_037659, intron 10 of 11)	intron (NR_037659, intron 10 of 11)	69866	NM_003774	8693	Hs.25130	NM_003774	ENSG00000257594	GALNT4	GALNAC-T4|GALNACT4	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.740	0.881	0.676	0.162	0.330	0.171	0.235	1.254	0.216	0.134	0.165	0.169	0.329	6.507	0.273	0.348	0.292	0.324	0.425	0.387	0.527	0.527	0.176	0.318	0.275	0.669	0.982	0.553	0.445	0.469	0.208	0.136	0.284	0.122	0.238	0.193	0.384	0.963	0.773	0.054	0.065	0.012	0.019	0.235	0.169	0.036	0.075	0.067	0.122
2406	chr13	101317462	101328291	+	0	NA	intron (NM_032813, intron 1 of 18)	intron (NM_032813, intron 1 of 18)	4313	NM_032813	84899	Hs.190983	NM_032813	ENSG00000125247	TMTC4	-	transmembrane and tetratricopeptide repeat containing 4	protein-coding	2.083	2.136	2.377	2.144	0.934	0.443	6.281	0.366	0.119	0.723	0.434	1.872	3.805	0.692	0.092	2.598	3.156	1.519	2.310	3.891	3.037	3.950	1.644	1.125	1.092	1.704	nan	1.443	2.527	1.576	2.182	0.495	1.550	2.620	2.439	1.857	nan	0.687	0.440	2.663	2.363	0.557	2.079	6.281	1.872	0.601	0.984	0.247	0.341
76	chr1	10566527	10602841	+	0	NA	intron (NM_004565, intron 2 of 8)	intron (NM_004565, intron 2 of 8)	49681	NM_004565	5195	Hs.149983	NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding	1.096	0.958	nan	1.848	1.163	0.658	2.106	0.435	0.111	0.377	0.267	1.195	1.778	0.095	0.124	0.514	0.563	0.461	0.849	1.819	2.179	0.699	0.224	0.558	nan	0.896	nan	7.338	7.553	nan	0.447	0.767	0.812	0.428	0.552	0.572	1.240	1.504	0.816	1.174	1.636	0.068	0.305	2.106	1.195	0.306	0.262	0.425	0.340
7621	chr8	23808765	23841622	+	0	NA	Intergenic	Intergenic	-112873	NM_003155	6781	Hs.25590	NM_003155	ENSG00000159167	STC1	STC	stanniocalcin 1	protein-coding	nan	2.427	nan	0.043	0.171	0.098	4.120	0.057	0.089	0.095	0.107	0.055	0.878	0.056	0.093	0.733	0.500	0.609	0.678	nan	0.688	nan	0.095	0.058	0.062	0.188	0.314	0.891	0.820	1.173	0.878	0.550	0.788	1.819	2.641	0.428	0.944	nan	nan	0.333	0.561	0.519	0.070	4.120	0.055	0.044	1.064	0.622	0.206
982	chr1	249131468	249134067	+	0	NA	intron (NM_024836, intron 1 of 3)	CpG	390	NM_024836	79894	Hs.521151	NM_024836	ENSG00000171161	ZNF672	-	zinc finger protein 672	protein-coding	10.665	10.807	8.941	12.900	11.998	5.738	4.125	5.037	0.491	5.797	2.872	6.784	17.016	5.215	0.144	7.566	10.611	15.083	21.591	15.997	13.063	15.660	9.162	23.442	23.302	5.421	5.695	8.179	9.459	6.944	8.289	1.867	3.821	10.760	7.663	7.014	9.821	4.665	2.489	7.611	5.290	1.692	2.986	4.125	6.784	1.459	4.818	1.331	3.811
2592	chr14	53017567	53022091	+	0	NA	promoter-TSS (NM_001160047)	promoter-TSS (NM_001160047)	-37	NM_001099652	283554	Hs.416214	NM_001099652	ENSG00000180998	GPR137C	TM7SF1L2	G protein-coupled receptor 137C	protein-coding	nan	5.156	4.039	5.090	4.028	2.091	5.320	1.810	0.319	1.607	1.354	5.820	16.381	1.438	0.105	4.344	5.881	6.287	8.053	12.355	7.649	8.059	4.698	11.109	11.620	3.844	4.308	3.595	9.224	7.608	8.484	2.261	4.729	7.829	7.047	2.887	2.943	nan	2.156	8.041	7.718	1.597	5.402	5.320	5.820	1.265	1.932	1.394	1.096
7646	chr8	37671209	37684334	+	0	NA	intron (NM_032777, intron 2 of 18)	MLT2C1|LTR|ERVL	23370	NM_032777	25960	Hs.274136	NM_032777	ENSG00000020181	ADGRA2	GPR124|TEM5	adhesion G protein-coupled receptor A2	protein-coding	1.158	0.574	nan	0.769	0.346	0.127	0.233	2.103	0.531	0.036	0.113	0.237	0.352	0.090	0.088	4.185	4.866	4.138	3.611	0.574	0.659	1.130	0.330	2.367	2.668	0.192	0.445	0.427	0.560	0.540	0.516	1.664	2.625	0.272	0.268	0.961	1.865	0.587	0.697	0.034	0.205	0.051	0.072	0.233	0.237	0.134	0.200	2.118	0.512
8151	chr9	71167202	71171734	+	0	NA	Intergenic	Intergenic	-7950	NR_109769	101927015	Hs.406454	NR_109769	ENSG00000234506	LINC01506	-	long intergenic non-protein coding RNA 1506	ncRNA	nan	nan	nan	0.114	0.197	0.109	0.129	0.066	0.035	0.071	0.070	0.053	0.236		0.092	3.209	3.534	12.022	3.935	0.379	nan	0.107	0.175	5.157	4.899	0.559	0.956	0.114	0.184	0.114	0.033	2.229	3.385	0.121	0.090	0.124	0.227	0.412	0.527	0.013	0.078	0.020	0.035	0.129	0.053		0.025	2.100	0.056
1345	chr11	22355846	22370716	+	0	NA	exon (NM_020346, exon 2 of 12)	exon (NM_020346, exon 2 of 12)	3614	NM_020346	57084	Hs.242821	NM_020346	ENSG00000091664	SLC17A6	DNPI|VGLUT2	solute carrier family 17 member 6	protein-coding	0.762	0.895	0.630	0.129	0.179	0.097	0.181	0.095	0.043	0.105	0.071	0.073	0.448	0.014	0.075	0.531	0.365	0.136	0.146	0.400	0.465	0.261	0.141	0.133	0.093	4.441	5.948	0.232	0.249	0.676	0.432	0.251	0.323	3.259	2.795	0.114	0.255	0.549	0.566	8.718	1.470	1.439	0.985	0.181	0.073	2.099	0.041	0.087	0.041
2290	chr13	45008560	45012145	+	0	NA	intron (NM_183422, intron 1 of 2)	intron (NM_183422, intron 1 of 2)	708	NM_006022	8848	Hs.436383	NM_006022	ENSG00000102804	TSC22D1	Ptg-2|TGFB1I4|TSC22	TSC22 domain family member 1	protein-coding	6.447	8.024	5.667	4.846	5.936	2.683	2.459	3.235	0.091	3.538	1.601	6.781	18.331	1.814	0.087	11.848	14.143	5.268	7.556	13.564	8.226	11.896	6.050	11.916	11.494	6.324	7.702	3.732	7.897	13.119	15.474	5.396	12.132	7.159	6.393	16.353	14.563	2.870	1.996	4.168	7.518	1.416	2.493	2.459	6.781	0.810	1.774	6.029	4.739
4431	chr2	90371537	90376960	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1262364	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA	7.879	10.219	8.783	1.364	3.916	2.361	0.706	1.624	7.112	1.134	3.332	0.839	4.416	0.699	4.332	4.464	1.510	1.011	1.141	2.727	3.432	1.204	1.238	1.705	1.750	3.260	4.289	3.496	3.409	3.981	0.983	1.671	3.122	0.627	1.329	2.196	3.687	1.572	2.302	0.668	0.491	0.541	0.568	0.706	0.839	0.395	0.506	1.057	0.887
1123	chr10	62702132	62705104	+	0	NA	intron (NR_024554, intron 2 of 11)	CpG	415	NM_001242359	9886	Hs.737374	NM_014836	ENSG00000072422	RHOBTB1	-	Rho related BTB domain containing 1	protein-coding	8.157	nan	8.713	2.633	2.296	1.289	1.937	4.538	0.695	3.199	1.279	3.260	10.524	7.219	0.279	9.259	14.897	14.613	15.823	7.723	6.283	12.619	10.501	24.146	24.589	2.986	4.838	7.742	17.049	2.565	3.096	4.619	9.636	8.865	5.318	9.803	7.981	3.116	2.091	0.998	4.268	1.697	2.426	1.937	3.260	1.206	1.716	3.443	2.049
758	chr1	196567661	196579826	+	0	NA	intron (NM_198503, intron 1 of 27)	intron (NM_198503, intron 1 of 27)	3818	NM_001287819	343450	Hs.657046	NM_198503	ENSG00000162687	KCNT2	KCa4.2|SLICK|SLO2.1	potassium sodium-activated channel subfamily T member 2	protein-coding	1.497	nan	1.206	0.712	2.362	1.358	0.865	0.862	0.134	0.102	0.138	0.955	1.476	0.372	0.134	0.526	0.388	0.287	0.372	4.424	3.775	2.069	1.317	0.815	0.944	0.634	nan	2.278	2.781	1.658	1.768	0.098	0.141	3.003	2.539	4.190	7.261	1.420	0.836	0.009	0.163	0.484	0.026	0.865	0.955	0.096	1.073	0.008	1.995
6351	chr5	87834087	87855918	+	0	NA	intron (NR_015436, intron 3 of 4)	AT_rich|Low_complexity|Low_complexity	-110095	NR_105021	102546226	Hs.535810	NR_105021	ENSG00000250156	LINC02060	-	long intergenic non-protein coding RNA 2060	ncRNA	0.911	1.339	0.798	0.077	0.184	0.088	0.071	0.107	0.147	0.065	0.091	0.016	0.273	0.055	0.120	0.656	0.658	2.455	1.620	0.178	0.196	0.100	0.077	0.153	0.151	0.997	1.009	0.181	0.214	0.472	0.242	0.267	0.676	10.847	15.671	0.232	nan	0.326	0.264	0.010	0.086	3.653	0.059	0.071	0.016	0.009	0.070	0.269	0.097
5902	chr4	54506171	54530557	+	0	NA	Intergenic	Intergenic	-43704	NR_125918	100506444	Hs.636176	NR_125918	ENSG00000249341	LOC100506444	-	uncharacterized LOC100506444	ncRNA	nan	0.974	1.443	0.619	0.644	0.321	0.231	0.268	0.084	0.562	0.275	0.686	1.238	0.027	0.110	0.398	0.473	0.456	0.878	0.309	0.382	4.819	1.397	0.327	0.308	0.537	0.857	2.280	1.526	0.333	0.158	0.205	0.449	0.911	1.287	0.200	0.419	2.085	1.693	0.115	0.214	0.223	0.361	0.231	0.686	0.103	0.655	0.187	0.058
14	chr1	1306563	1319224	+	0	NA	Intergenic	AluSx|SINE|Alu	-2075	NM_017900	54998	Hs.632515	NM_017900	ENSG00000175756	AURKAIP1	AIP|AKIP|MRP-S38	aurora kinase A interacting protein 1	protein-coding	2.283	nan	3.213	2.932	1.612	0.723	0.584	0.774	0.265	0.781	0.524	0.634	2.677	0.932	0.180	1.559	1.899	1.734	2.949	2.798	2.465	2.129	0.953	4.125	4.421	1.304	nan	nan	7.560	nan	1.471	1.115	1.804	0.859	0.988	2.253	2.853	1.209	0.693	2.741	2.286	0.127	0.445	0.584	0.634	0.492	0.904	0.428	0.714
4761	chr2	235759683	235767941	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-96816	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3 domain binding protein 4	protein-coding	0.715	nan	0.518	0.133	0.379	0.165	0.264	0.072	0.077	0.075	0.089	0.349	0.387	0.026	0.117	0.712	0.994	8.822	2.363	0.230	0.419	0.315	0.220	0.322	0.367	0.390	0.569	0.411	nan	0.508	0.237	0.293	0.532	0.047	0.141	0.180	0.383	0.639	0.433	0.077	0.311	0.046	0.038	0.264	0.349	0.096	0.026	0.227	0.015
2587	chr14	51468653	51475754	+	0	NA	intron (NM_052978, intron 5 of 6)	intron (NM_052978, intron 5 of 6)	-60955	NM_002863	5836	Hs.282417	NM_002863	ENSG00000100504	PYGL	GSD6	glycogen phosphorylase L	protein-coding	3.571	nan	3.259	1.294	1.482	0.828	0.900	5.661	0.274	0.484	0.436	0.276	2.834	0.160	0.100	0.442	0.542	0.500	1.113	0.508	0.659	0.493	0.214	0.488	0.488	3.054	4.041	1.743	0.836	3.499	2.466	0.463	0.473	5.573	14.209	2.348	6.342	nan	1.015	0.315	0.450	1.933	0.358	0.900	0.276	0.275	2.120	0.097	1.769
2328	chr13	67702809	67722430	+	0	NA	intron (NM_001318372, intron 2 of 4)	MER51B|LTR|ERV1	91849	NM_001318373	5101	Hs.654709	NM_020403	ENSG00000184226	PCDH9	-	protocadherin 9	protein-coding	nan	1.295	nan	0.105	0.207	0.049	0.967	0.091	0.124	0.128	0.185	0.184	0.707	0.067	0.066	0.552	0.394	0.171	0.179	0.602	0.654	0.438	0.183	0.133	0.107	0.710	1.018	0.556	0.637	0.677	0.396	0.125	0.244	2.501	3.291	0.445	0.800	0.205	0.187	0.014	0.327	0.791	0.331	0.967	0.184	0.312	0.047	0.050	0.156
5630	chr3	164070094	164104680	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-198043	NR_031665	100302148		NR_031665	ENSG00000221251	MIR1263	MIRN1263|hsa-mir-1263	microRNA 1263	ncRNA	1.099	1.218	0.830	0.153	0.344	0.167	0.130	0.209	0.153	0.167	0.173	0.159	0.172	0.025	0.067	0.306	0.175	0.163	0.206	0.269	0.398	0.471	0.207	0.269	0.264	5.600	5.892	nan	0.358	nan	0.633	0.110	0.190	0.087	0.108	0.648	1.448	0.437	0.342	0.018	0.052	0.036	0.027	0.130	0.159	0.045	0.024	0.037	0.527
2889	chr15	58637776	58657130	+	0	NA	Intergenic	Intergenic	-76722	NM_000236	3990	Hs.654472	NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding	0.675	1.527	0.859	1.134	3.282	1.746	0.240	0.594	0.150	0.439	0.269	5.064	0.596	0.012	0.102	0.328	0.277	0.569	1.945	2.759	2.600	0.376	0.135	0.207	0.247	0.210	0.405	2.991	3.093	0.660	0.398	0.197	0.322	0.479	0.559	0.257	0.358	0.429	0.457	0.806	0.988	0.069	0.107	0.240	5.064	0.041	0.089	0.113	0.102
3786	chr18	46376598	46429318	+	0	NA	Intergenic	Intergenic	66219	NM_001190823	4092	Hs.465087	NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding	nan	0.742	1.595	0.803	0.456	0.226	1.876	0.212	0.095	0.268	0.134	1.194	0.999	0.049	0.071	0.521	0.633	0.261	0.474	0.863	0.921	3.858	0.901	0.235	0.227	0.571	0.796	0.514	0.687	0.755	0.693	0.267	0.345	1.752	1.690	0.323	nan	5.061	2.668	0.675	0.106	0.196	0.341	1.876	1.194	0.382	0.871	0.062	0.129
234	chr1	39594562	39682177	+	0	NA	intron (NM_012090, intron 1 of 92)	intron (NM_012090, intron 1 of 92)	88530	NM_012090	23499	Hs.472475	NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding	9.390	nan	1.800	0.936	0.399	0.249	0.382	1.084	0.294	0.242	0.216	1.036	2.022	2.259	0.165	0.304	0.268	0.355	0.733	1.655	1.789	nan	0.228	0.424	0.443	1.067	1.626	13.090	14.621	nan	0.916	0.462	0.619	0.117	0.148	1.264	3.181	2.170	nan	2.831	0.782	0.041	0.087	0.382	1.036	0.244	0.479	0.189	0.898
7867	chr8	107279826	107288798	+	0	NA	intron (NM_001198533, intron 1 of 16)	intron (NM_001198533, intron 1 of 16)	1906	NM_001198533	55074	Hs.127286	NM_018002	ENSG00000164830	OXR1	Nbla00307|TLDC3	oxidation resistance 1	protein-coding	2.968	nan	nan	0.969	0.767	0.262	1.752	2.275	0.413	0.332	0.350	4.589	5.878	0.611	0.070	1.188	1.914	2.451	2.421	0.589	0.463	nan	0.601	6.457	7.034	4.647	6.656	5.158	nan	nan	2.096	0.689	1.956	0.270	0.302	3.199	nan	0.857	0.818	0.075	0.139	0.095	0.786	1.752	4.589	0.291	1.448	0.386	1.853
594	chr1	156627091	156634020	+	0	NA	Intergenic	Intergenic	16634	NM_006617	10763	Hs.527971	NM_006617	ENSG00000132688	NES	Nbla00170	nestin	protein-coding	nan	nan	1.498	0.661	1.967	1.141	1.151	2.365	0.341	1.540	0.429	0.189	0.881	0.342	0.106	1.120	1.293	1.330	2.513	1.019	nan	4.529	1.413	0.305	0.245	0.848	1.463	3.798	6.672	0.787	0.490	1.169	1.378	0.648	1.217	1.583	4.110	1.402	0.917	0.218	0.584	0.130	0.068	1.151	0.189	0.800	5.333	0.256	0.714
2924	chr15	68128410	68156481	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-10062	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA	1.315	1.146	nan	0.542	0.526	0.309	0.327	0.527	0.166	0.374	0.203	0.431	1.816	0.410	0.110	3.013	3.688	1.829	1.697	0.806	0.921	nan	0.762	1.445	1.501	1.022	1.455	1.423	1.981	1.686	1.430	2.812	4.443	0.499	0.613	1.171	2.489	0.759	0.524	0.109	0.477	0.085	0.426	0.327	0.431	0.206	0.330	6.233	0.498
6746	chr6	37273001	37295034	+	0	NA	intron (NM_017772, intron 10 of 12)	L3|LINE|CR1	-37731	NR_046399	9025	Hs.485278	NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding	nan	1.260	nan	0.334	0.434	0.218	0.679	0.263	0.095	0.428	0.243	1.489	0.954	0.074	0.111	0.479	0.605	0.377	nan	nan	1.178	1.059	0.440	0.441	0.580	3.440	3.784	1.542	2.454	0.937	0.910	0.261	0.373	0.647	0.675	0.614	1.587	1.121	0.678	0.617	0.286	0.191	0.179	0.679	1.489	0.408	0.237	0.032	0.395
4580	chr2	166317030	166333739	+	0	NA	promoter-TSS (NM_001172173)	promoter-TSS (NM_001172173)	-773	NM_001172173	80034	Hs.470479	NM_024969	ENSG00000178662	CSRNP3	FAM130A2|PPP1R73|TAIP-2|TAIP2	cysteine and serine rich nuclear protein 3	protein-coding	1.694	1.070	nan	0.359	0.563	0.347	2.029	0.377	0.116	0.612	0.553	0.303	0.402	0.059	0.093	2.019	1.471	2.256	1.500	1.102	1.346	3.231	1.138	0.387	0.412	4.437	5.035	0.646	0.748	6.889	6.743	0.309	0.475	0.010	0.009	4.017	6.769	0.788	0.522	0.030	0.208	0.006	0.281	2.029	0.303	0.296	0.364	0.139	1.786
5213	chr22	25337987	25350381	+	0	NA	Intergenic	MIR3|SINE|MIR	-8870	NM_001001663	255349	Hs.329040	NM_001001663	ENSG00000206069	TMEM211	bA9F11.1	transmembrane protein 211	protein-coding	1.341	nan	1.276	0.825	1.195	0.595	0.694	0.318	0.125	0.178	0.154	1.362	1.324	0.484	0.067	0.806	1.475	0.991	1.551	0.980	0.911	2.250	0.642	1.472	1.554	0.365	0.732	1.454	2.464	1.409	1.370	0.522	0.857	1.204	1.246	0.899	0.898	3.044	1.947	0.183	0.555	0.159	0.167	0.694	1.362	0.268	0.860	0.253	0.158
4302	chr2	40584891	40604145	+	0	NA	intron (NM_021097, intron 1 of 9)	intron (NM_021097, intron 1 of 9)	62926	NM_001112801	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding	1.005	nan	1.014	0.192	3.084	1.533	0.658	1.053	0.208	0.416	0.376	0.460	0.537	0.071	0.143	0.499	0.468	0.379	0.641	nan	0.589	1.413	0.651	0.272	0.275	1.301	1.644	0.982	1.365	1.314	0.992	0.252	0.328	0.220	0.277	2.237	6.467	nan	0.819	0.635	1.151	0.030	0.273	0.658	0.460	0.031	0.083	0.062	1.407
3554	chr17	73200226	73203803	+	0	NA	intron (NM_001303276, intron 1 of 17)	CpG	469	NM_024844	79902	Hs.362817	NM_024844	ENSG00000125450	NUP85	FROUNT|Nup75	nucleoporin 85	protein-coding	7.039	5.274	6.046	7.121	9.468	5.806	4.845	4.903	1.239	3.299	1.723	6.272	14.033	7.348	0.336	11.149	10.630	10.925	14.677	11.042	10.756	11.224	6.032	8.495	9.508	nan	9.145	10.618	15.597	16.383	16.901	8.349	12.687	8.794	11.508	8.947	10.735	4.783	1.848	3.055	3.797	2.016	2.620	4.845	6.272	1.903	3.941	2.161	3.104
6158	chr5	6896143	6904354	+	0	NA	Intergenic	Intergenic	-72214	NR_036242	100422999		NR_036242	ENSG00000283420	MIR4278	-	microRNA 4278	ncRNA	1.726	1.070	7.085	5.134	0.953	0.599	0.078	0.182	0.194	1.822	1.323	3.484	3.319	0.053	0.116	0.608	0.726	0.129	nan	8.897	10.213	0.211	0.096	0.051	0.034	3.331	3.551	nan	0.380	nan	0.747	0.174	0.158	2.446	3.154	1.444	2.769	4.209	nan	0.068	0.130	0.927	0.804	0.078	3.484	0.132	0.184	0.156	1.196
6936	chr6	123093922	123120821	+	0	NA	Intergenic	Intergenic	-2823	NM_001286138	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	sphingomyelin phosphodiesterase acid like 3A	protein-coding	1.833	1.514	1.658	0.519	1.470	0.882	0.756	0.128	0.060	0.345	0.188	1.208	2.737	0.478	0.141	0.311	0.204	0.730	1.102	4.415	3.727	2.782	1.216	0.819	0.829	1.035	1.312	0.746	1.062	1.365	1.162	0.235	0.622	2.896	2.946	0.812	1.274	0.659	0.532	1.310	4.650	0.889	0.254	0.756	1.208	0.190	0.336	0.151	0.437
6551	chr5	171967972	171998766	+	0	NA	Intergenic	Intergenic	-84900	NM_001308178	54492	Hs.91521	NM_001142651	ENSG00000214357	NEURL1B	NEURL3|hNeur2|neur2	neuralized E3 ubiquitin protein ligase 1B	protein-coding	0.662	0.733	1.034	0.514	1.527	0.720	0.225	0.206	0.127	0.270	0.229	3.674	1.793	0.080	0.100	0.431	0.801	0.479	nan	3.435	3.422	1.776	0.605	0.317	0.328	0.332	nan	3.363	2.533	3.961	3.688	0.329	0.357	0.352	0.226	0.213	0.306	1.410	0.749	1.885	1.419	0.057	0.553	0.225	3.674	0.307	1.258	0.048	0.064
6107	chr4	187488901	187494419	+	0	NA	Intergenic	Intergenic	-14939	NM_005958	4543	Hs.243467	NM_005958	ENSG00000168412	MTNR1A	MEL-1A-R|MT1	melatonin receptor 1A	protein-coding	nan	0.615	nan	0.064	0.155	0.059	0.092	0.069	0.059	0.086	0.103	0.194	0.238	0.033	0.048	0.272	0.321	7.932	10.399	0.246	0.303	0.079	0.056	0.217	0.263	0.031	0.152	0.115	0.214	0.141	0.195	0.225	0.347	0.023	0.047	0.079	0.066	0.092	0.094	0.051	0.112		0.059	0.092	0.194	0.017	0.036		0.022
3116	chr16	30885274	30894858	+	0	NA	intron (NR_110942, intron 2 of 2)	AluSg|SINE|Alu	3285	NR_110942	101928736	Hs.303197	NR_110940	ENSG00000260083	MIR762HG	-	MIR762 host gene	ncRNA	3.742	1.695	3.264	3.279	2.634	1.520	2.168	0.759	0.221	0.885	0.303	3.221	7.128	1.889	0.096	3.347	3.007	3.246	4.082	4.003	3.731	7.332	2.357	5.006	5.469	2.305	3.374	6.088	8.629	3.667	4.165	2.069	2.956	3.289	3.581	2.036	2.593	2.499	1.360	2.117	1.466	0.615	0.894	2.168	3.221	0.873	1.932	0.774	0.782
1000	chr10	4457750	4484442	+	0	NA	Intergenic	Intergenic	22435	NR_108056	100507059	Hs.158438	NR_108054	ENSG00000224382	LINC00703	-	long intergenic non-protein coding RNA 703	ncRNA	0.418	0.694	0.427	0.072	0.214	0.102	0.106	0.255	0.134	0.044	0.097	0.103	0.181	3.794	0.150	0.387	0.296	0.224	0.351	0.157	0.210	0.192	0.163	0.100	0.103	0.443	0.578	0.187	0.180	0.147	0.053	0.131	0.143	0.035	0.062	0.123	0.179	0.228	0.247	0.017	0.040	0.004	0.027	0.106	0.103		0.006	0.029	0.046
43	chr1	6256045	6270425	+	0	NA	Intergenic	AluSx|SINE|Alu	2605	NR_125997	102724450	Hs.669107	NR_125997	ENSG00000226944	LOC102724450	-	uncharacterized LOC102724450	ncRNA	2.605	nan	1.834	0.378	1.733	0.747	0.726	0.967	0.180	0.640	0.355	0.827	2.979	3.914	0.212	2.424	2.049	1.648	2.202	2.722	3.570	2.288	0.983	4.372	4.361	1.905	nan	nan	9.211	nan	3.378	1.996	2.903	1.061	1.094	3.508	4.859	1.758	0.822	1.380	0.878	0.212	0.408	0.726	0.827	0.472	1.308	0.703	1.765
8410	chrX	128263142	128281309	+	0	NA	Intergenic	AluSz|SINE|Alu	385257	NM_001282874	6594	Hs.152292	NM_003069	ENSG00000102038	SMARCA1	ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding	1.040	nan	1.240	0.179	3.344	1.728	0.211	0.035	0.026	0.707	0.487	0.217	0.174	0.018	0.037	0.184	0.133	0.273	0.312	0.129	0.210	0.765	0.259	0.109	0.122	0.191	0.338	0.299	0.514	0.560	0.344	0.065	0.103	1.819	1.667	0.653	1.633	1.146	0.637	0.003	0.040	0.728	0.562	0.211	0.217	0.054	0.156	0.005	1.056
6012	chr4	122014780	122024412	+	0	NA	Intergenic	Intergenic	-25923	NM_024574	79625	Hs.709520	NM_024574	ENSG00000173376	NDNF	C4orf31|NORD	neuron derived neurotrophic factor	protein-coding	0.562	0.755	nan	0.166	0.224	0.166	0.173	0.093	0.035	0.065	0.111	0.136	0.173	0.044	0.049	0.420	0.184	6.947	1.332	0.320	0.378	0.121	0.051	0.352	0.390	0.211	0.369	0.396	0.376	0.350	0.188	0.183	0.193	0.031	0.031	0.239	0.775	0.440	0.357	0.012	0.046	0.024	0.041	0.173	0.136		0.056	0.040	0.140
2582	chr14	50233486	50239753	+	0	NA	intron (NM_014315, intron 1 of 12)	AluSq2|SINE|Alu	1832	NM_014315	23588	Hs.509264	NM_014315	ENSG00000165516	KLHDC2	HCLP-1|HCLP1|LCP	kelch domain containing 2	protein-coding	nan	nan	4.155	5.716	3.532	2.047	5.100	2.632	0.641	1.430	1.053	4.619	6.544	3.121	0.180	4.336	4.259	6.829	9.119	7.700	7.288	6.223	2.857	8.394	8.292	2.587	3.421	7.130	10.310	9.894	10.917	3.963	6.598	4.622	4.763	4.154	5.989	nan	2.479	6.133	6.545	0.668	3.727	5.100	4.619	1.350	2.768	3.329	2.367
6669	chr6	25233762	25258530	+	0	NA	intron (NR_110863, intron 2 of 2)	intron (NR_110863, intron 2 of 2)	15489	NR_110862	101928663	Hs.561600	NR_110862		LOC101928663	-	uncharacterized LOC101928663	ncRNA	1.109	0.902	nan	0.294	0.297	0.152	0.360	0.285	0.137	0.184	0.171	0.222	nan	0.062	0.117	0.510	0.407	0.289	nan	0.357	0.463	nan	1.896	0.241	0.209	0.558	0.843	0.592	0.468	0.432	0.241	0.163	0.237	1.375	1.109	0.261	0.564	0.788	0.480	0.080	0.136	0.307	0.291	0.360	0.222	0.216	0.184	0.061	0.094
3502	chr17	62291112	62309640	+	0	NA	intron (NM_018469, intron 1 of 11)	intron (NM_018469, intron 1 of 11)	7740	NM_001288733	55852	Hs.175414	NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding	1.519	nan	1.309	0.294	0.498	0.276	0.214	0.294	0.113	0.193	0.170	0.336	0.512	0.065	0.138	0.574	0.608	0.417	0.610	0.425	0.552	1.195	0.423	0.716	0.721	0.925	nan	1.437	1.546	4.460	4.232	0.348	0.482	0.544	0.466	0.861	2.918	0.768	0.686	0.750	0.403	0.155	0.170	0.214	0.336	0.138	0.214	0.112	0.906
7887	chr8	116112908	116128662	+	0	NA	Intergenic	Intergenic	559454	NM_001282902	7227	Hs.657018	NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding	nan	nan	1.247	0.213	0.275	0.082	0.073	0.170	0.103	0.088	0.119	0.714	0.433	0.055	0.094	0.419	0.522	0.264	0.384	0.639	0.791	nan	0.064	0.660	nan	1.951	nan	0.921	1.102	6.183	5.976	0.211	0.503	1.480	1.123	0.244	0.449	0.789	0.726	0.018	0.085	0.525	0.142	0.073	0.714	0.019	0.277	0.457	0.079
3955	chr19	6729072	6741191	+	0	NA	intron (NM_001080452, intron 4 of 17)	AluJb|SINE|Alu	1658	NR_106849	102465474		NR_106849	ENSG00000125734	MIR6791	hsa-mir-6791	microRNA 6791	ncRNA	1.427	1.311	3.125	1.418	1.962	0.814	0.241	1.152	0.204	0.694	0.309	1.302	2.781	2.202	0.065	1.061	1.776	1.999	3.064	1.802	2.016	1.435	0.648	0.091	0.112	1.555	2.063	2.822	nan	3.895	4.000	0.665	1.119	0.083	0.067	1.000	2.575	1.418	0.640	1.105	0.051	0.023	0.589	0.241	1.302	0.361	2.509	0.504	1.043
5367	chr3	49054512	49060580	+	0	NA	promoter-TSS (NM_199074)	promoter-TSS (NM_199074)	121	NR_029948	494337		NR_029948	ENSG00000199032	MIR425	MIRN425|hsa-mir-425|mir-425	microRNA 425	ncRNA	5.479	5.783	nan	5.659	3.743	2.379	2.191	2.074	0.370	2.030	1.241	4.258	14.319	5.110	0.166	4.293	4.805	5.903	9.255	8.438	7.215	8.113	3.130	10.081	9.898	2.410	3.413	6.623	9.482	5.477	6.558	4.980	8.079	6.048	5.391	4.948	3.983	2.699	1.721	5.418	6.186	1.807	3.677	2.191	4.258	0.947	5.011	3.776	1.753
193	chr1	33281044	33285700	+	0	NA	5' UTR (NM_003680, exon 1 of 13)	intron (NM_001256121, intron 1 of 6)	253	NM_022753	64766	Hs.440880	NM_022753	ENSG00000116497	S100PBP	S100PBPR	S100P binding protein	protein-coding	8.921	nan	8.684	17.261	7.123	4.195	7.565	4.885	0.276	6.662	2.962	15.029	15.277	8.791	0.248	7.313	8.027	8.186	11.632	16.129	15.346	nan	3.803	18.812	19.793	7.407	9.302	6.477	8.890	nan	8.910	6.179	9.562	5.777	5.912	7.265	12.115	4.192	nan	10.502	8.380	1.517	6.342	7.565	15.029	1.913	3.789	4.487	5.131
288	chr1	46048463	46052465	+	0	NA	intron (NM_152298, intron 1 of 13)	CpG	804	NM_002482	4678	Hs.319334	NM_002482	ENSG00000132780	NASP	FLB7527|HMDRA1|PRO1999	nuclear autoantigenic sperm protein	protein-coding	nan	3.886	nan	5.465	6.049	2.286	2.774	3.046	0.880	4.530	1.656	2.568	17.090	3.664	0.159	9.617	8.081	6.833	8.884	15.710	13.824	7.610	4.782	13.769	14.158	5.807	nan	nan	15.518	10.578	12.126	6.637	nan	4.801	4.783	13.424	10.008	3.854	1.913	5.762	5.566	0.682	3.464	2.774	2.568	1.629	2.029	3.136	2.987
119	chr1	19353743	19403635	+	0	NA	Intergenic	AluSg|SINE|Alu	-95863	NM_001136265	126917	Hs.466625	NM_001136265	ENSG00000169991	IFFO2	-	intermediate filament family orphan 2	protein-coding	0.683	0.659	nan	0.342	0.353	0.155	0.326	0.081	0.083	0.104	0.090	0.065	9.198	0.057	0.104	0.292	0.222	0.218	0.415	0.697	0.670	0.389	0.124	0.326	nan	0.201	nan	0.634	0.607	nan	0.235	0.158	0.187	0.183	0.144	0.180	0.308	1.222	0.741	1.872	1.035	0.030	0.058	0.326	0.065	0.213	1.107	0.032	0.057
4875	chr20	20338373	20397011	+	0	NA	Intergenic	Intergenic	18927	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding	3.247	1.939	nan	3.539	3.671	1.867	2.224	0.107	0.080	1.874	0.924	4.851	6.220	0.046	0.072	1.705	2.151	0.314	0.383	6.638	5.414	6.226	2.422	0.586	0.589	2.975	4.196	5.819	6.617	5.821	7.590	1.212	2.276	6.224	5.686	0.659	1.029	2.025	1.163	1.893	4.018	1.545	1.177	2.224	4.851	1.454	2.390	1.131	0.661
7859	chr8	105597307	105602775	+	0	NA	intron (NM_013437, intron 1 of 6)	intron (NM_013437, intron 1 of 6)	1211	NM_013437	29967	Hs.600630	NM_013437	ENSG00000147650	LRP12	ST7	LDL receptor related protein 12	protein-coding	6.366	nan	nan	3.799	3.964	2.142	2.317	1.692	0.294	0.803	0.256	4.193	11.705	1.946	0.103	2.493	2.876	2.714	3.700	9.625	7.853	6.526	2.121	9.326	9.285	1.923	nan	11.702	nan	nan	5.233	1.656	4.589	3.890	2.792	3.837	nan	2.117	1.071	2.003	2.913	1.499	1.545	2.317	4.193	0.355	3.259	1.214	1.086
5227	chr22	28416196	28433048	+	0	NA	intron (NM_001145418, intron 13 of 22)	intron (NM_001145418, intron 13 of 22)	-108022	NR_036169	100423034		NR_036169	ENSG00000264073	MIR3199-1	mir-3199-1	microRNA 3199-1	ncRNA	nan	0.880	1.351	1.076	2.653	1.382	0.793	0.714	0.156	0.340	0.121	1.862	5.595	0.058	0.056	0.373	0.625	0.248	nan	3.126	2.508	1.870	0.528	0.776	0.837	2.339	nan	2.443	3.271	0.941	1.067	0.216	0.447	1.787	1.296	0.547	nan	2.468	1.705	1.929	3.296	0.492	1.323	0.793	1.862	1.077	0.650	0.429	0.241
5954	chr4	81505054	81537127	+	0	NA	intron (NM_152770, intron 3 of 5)	intron (NM_152770, intron 3 of 5)	264216	NM_152770	255119	Hs.527104	NM_152770	ENSG00000197826	C4orf22	-	chromosome 4 open reading frame 22	protein-coding	0.623	0.522	0.512	0.082	0.530	0.308	0.087	0.179	0.080	0.083	0.095	0.419	0.245	0.034	0.078	0.316	0.197	0.298	0.347	0.477	0.701	1.103	0.393	0.321	0.364	0.110	nan	0.532	0.577	0.289	0.143	0.123	0.196	0.253	0.292	0.174	nan	0.349	0.355	0.472	5.656	0.050	0.059	0.087	0.419	0.006	0.035	0.065	0.093
4730	chr2	222060816	222073713	+	0	NA	Intergenic	Intergenic	369814	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding	nan	0.939	1.674	0.422	0.310	0.149	0.389	0.070	0.062	0.194	0.149	0.177	nan	0.050	0.108	0.622	0.581	0.271	0.282	0.346	0.301	0.615	0.163	0.344	0.354	3.494	3.319	0.590	nan	1.388	1.775	0.135	0.270	0.581	0.681	0.677	nan	0.356	0.333	0.258	0.298	0.163	0.079	0.389	0.177	0.453	0.426	0.057	1.097
7946	chr8	135842271	135852510	+	0	NA	Intergenic	Intergenic	-2922	NR_126028	552853	Hs.575612	NR_126028	ENSG00000253433	NCRNA00250	C8orf24	non-protein coding RNA 250	ncRNA	nan	2.287	3.443	3.837	3.402	1.864	1.655	1.273	0.158	0.582	0.308	2.701	6.396	0.964	0.060	1.345	2.375	1.325	2.127	5.191	4.570	7.110	3.596	nan	9.037	1.266	1.478	2.034	3.376	2.162	2.394	1.256	3.587	3.633	3.448	2.721	3.617	1.651	1.039	1.655	3.291	0.680	1.489	1.655	2.701	0.529	2.570	1.022	1.459
4438	chr2	97532197	97537375	+	0	NA	intron (NM_017789, intron 1 of 14)	CpG	949	NM_017789	54910	Hs.516220	NM_017789	ENSG00000168758	SEMA4C	M-SEMA-F|SEMACL1|SEMAF|SEMAI	semaphorin 4C	protein-coding	7.115	3.163	6.344	3.997	5.710	3.284	6.706	1.042	0.123	5.130	2.041	8.649	14.990	4.822	0.117	8.171	9.891	5.431	7.603	11.978	9.230	6.582	2.110	10.002	9.641	2.333	3.861	9.943	12.994	3.920	4.109	3.029	6.204	3.023	1.974	4.445	4.070	1.849	1.005	8.030	7.701	0.847	2.513	6.706	8.649	2.539	4.818	2.274	2.429
2118	chr12	104668655	104709949	+	0	NA	intron (NM_001261446, intron 2 of 13)	intron (NM_001261446, intron 2 of 13)	-8208	NM_001008394	493861	Hs.659857	NM_001008394	ENSG00000255150	EID3	NS4EB|NSE4B|NSMCE4B	EP300 interacting inhibitor of differentiation 3	protein-coding	1.565	1.988	nan	1.640	1.164	0.525	0.628	1.182	0.351	0.650	0.498	0.966	2.420	4.174	0.233	1.215	1.453	1.577	2.902	1.709	1.613	2.529	0.753	3.536	3.928	1.868	2.247	1.686	2.679	1.755	1.933	0.934	1.354	2.398	3.574	1.235	1.499	1.798	1.055	0.752	1.333	0.471	0.598	0.628	0.966	0.313	0.661	0.736	0.392
415	chr1	98777408	98784077	+	0	NA	Intergenic	Intergenic	104475	NR_046088	729987	Hs.683961	NR_046088	ENSG00000226053	LINC01776	-	long intergenic non-protein coding RNA 1776	ncRNA	nan	nan	0.714	0.053	0.422	0.144	0.229	0.944	0.146	0.095	0.061	0.021	0.303	0.215	0.105	0.310	0.310	0.189	0.258	0.371	nan	0.100	0.053	0.266	0.234	6.159	nan	0.400	0.356	nan	0.353	0.216	0.090	1.408	1.186	0.236	0.434	0.649	0.543	0.034	0.053	0.341	0.047	0.229	0.021	0.028	0.090	0.029	0.075
4196	chr2	6580688	6591037	+	0	NA	Intergenic	MIRb|SINE|MIR	-70308	NR_110251	101929390	Hs.434407	NR_110251	ENSG00000227007	LINC01247	-	long intergenic non-protein coding RNA 1247	ncRNA	0.994	0.645	1.143	0.076	0.467	0.170	0.293	0.043	0.032	0.166	0.142	0.242	0.421	0.032	0.160	0.350	0.602	0.273	0.455	0.587	0.696	0.238	0.090	0.063	0.069	6.500	6.973	0.309	0.321	1.487	1.425	0.076	0.158	0.287	0.121	1.724	4.378	0.211	0.332	0.065	0.190	0.046	3.129	0.293	0.242	1.070	0.035	0.029	1.156
3987	chr19	17344286	17366849	+	0	NA	intron (NM_005234, intron 1 of 3)	CpG	584	NM_005234	2063	Hs.466148	NM_005234	ENSG00000160113	NR2F6	EAR-2|EAR2|ERBAL2	nuclear receptor subfamily 2 group F member 6	protein-coding	2.364	1.675	2.923	1.677	0.999	0.482	0.888	0.685	0.264	0.749	0.410	1.560	1.435	1.683	0.092	1.044	1.989	0.923	1.484	2.211	1.997	2.986	0.752	1.988	1.788	0.867	1.387	4.550	5.483	1.390	1.137	0.612	1.044	1.190	0.911	4.220	11.897	1.765	1.096	1.434	0.797	0.282	0.443	0.888	1.560	0.313	1.080	0.499	3.711
2597	chr14	55560631	55576409	+	0	NA	Intergenic	AluJr|SINE|Alu	-27415	NM_001177388	3958	Hs.531081	NM_002306	ENSG00000131981	LGALS3	CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2	galectin 3	protein-coding	nan	nan	0.863	1.508	0.568	0.358	3.657	2.804	0.399	0.238	0.162	0.303	3.270	0.096	0.115	1.412	1.640	4.270	6.745	0.519	0.651	0.915	0.263	1.999	2.073	0.410	0.780	2.364	2.164	0.734	0.422	0.564	0.881	0.368	0.496	0.196	0.309	nan	0.690	0.614	0.587	0.091	0.187	3.657	0.303	0.727	1.007	0.389	0.079
1292	chr11	8247278	8257642	+	0	NA	intron (NM_001270428, intron 1 of 3)	intron (NM_001270428, intron 1 of 3)	32965	NR_073006	4004	Hs.654426	NM_002315	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1	protein-coding	1.008	0.991	0.881	0.171	0.462	0.232	0.459	0.338	0.123	0.134	0.107	0.471	0.953	0.057	0.072	0.810	1.248	0.279	0.432	0.885	1.240	0.580	0.220	0.529	0.484	0.936	1.670	0.369	0.396	1.210	1.124	0.509	0.464	0.595	0.815	1.150	3.061	0.922	0.664	6.333	0.206	0.229	0.061	0.459	0.471	0.225	0.214	0.073	0.727
8370	chrX	13386735	13410204	+	0	NA	Intergenic	Intergenic	45109	NR_045260	100133123	Hs.449499	NR_045260	ENSG00000226985	LINC01203	-	long intergenic non-protein coding RNA 1203	ncRNA	1.134	nan	1.680	0.236	0.293	0.123	0.506	1.625	0.207	0.140	0.181	1.004	1.283	0.050	0.041	0.206	0.242	0.286	0.787	0.954	0.861	1.468	0.658	0.323	0.333	1.574	1.826	0.458	0.344	1.318	1.055	0.170	0.276	1.238	1.421	1.554	5.084	1.011	0.524	0.095	0.088	0.421	0.247	0.506	1.004	0.169	0.714	0.101	0.863
5441	chr3	101034985	101057933	+	0	NA	intron (NM_001077203, intron 22 of 22)	intron (NM_001077203, intron 22 of 22)	-7040	NM_016247	50939	Hs.209249	NM_016247	ENSG00000081148	IMPG2	IPM200|RP56|SPACRCAN|VMD5	interphotoreceptor matrix proteoglycan 2	protein-coding	nan	nan	1.281	0.115	0.417	0.188	0.066	0.241	0.078	0.095	0.165	0.172	0.214	0.066	0.080	0.277	0.201	0.145	0.242	0.265	0.342	0.243	0.129	0.342	0.325	0.595	0.756	0.246	0.286	1.622	0.766	0.166	0.246	0.057	0.039	5.997	7.613	0.411	0.385	0.041	0.050	0.004	0.048	0.066	0.172	0.008	0.031	0.052	4.132
1356	chr11	27367789	27393018	+	0	NA	intron (NM_080654, intron 1 of 2)	L2c|LINE|L2	4392	NM_030771	91057	Hs.143733	NM_030771	ENSG00000109881	CCDC34	L15|NY-REN-41|RAMA3	coiled-coil domain containing 34	protein-coding	1.025	1.482	0.990	0.957	0.936	0.533	0.934	1.074	0.194	1.187	0.656	1.175	5.153	0.363	0.096	1.087	1.049	0.647	1.106	1.655	1.844	2.859	0.965	0.519	0.554	1.160	1.606	1.456	2.011	0.804	0.576	0.442	0.785	2.531	3.980	0.538	0.774	2.254	1.060	0.591	0.569	0.774	0.217	0.934	1.175	0.153	0.486	0.141	0.215
5208	chr22	24307931	24317894	+	0	NA	TTS (NM_001084392)	TTS (NM_001084392)	3768	NM_001084392	1652	Hs.656723	NM_001355	ENSG00000099977	DDT	DDCT	D-dopachrome tautomerase	protein-coding	2.017	nan	1.277	0.853	2.033	0.996	1.451	1.168	0.227	0.424	0.197	3.096	7.320	0.674	0.061	2.706	3.044	2.736	3.630	3.088	3.059	2.578	0.798	4.661	4.597	2.872	4.355	2.977	3.557	3.597	3.844	0.989	1.888	2.020	2.945	1.217	1.963	2.704	1.270	1.457	0.744	1.137	1.090	1.451	3.096	0.998	1.496	0.396	0.508
1153	chr10	79200756	79243564	+	0	NA	intron (NM_001322832, intron 1 of 27)	(CATA)n|Simple_repeat|Simple_repeat	111530	NR_126365	101929286	Hs.568867	NR_126365		KCNMA1-AS3	-	KCNMA1 antisense RNA 3	ncRNA	0.918	nan	1.099	1.130	0.580	0.203	0.119	0.074	0.057	0.274	0.175	1.086	2.625	0.028	0.060	0.285	0.318	0.177	0.232	0.837	1.159	1.783	0.678	0.143	0.132	0.402	0.599	5.093	nan	0.353	0.280	0.212	0.257	0.503	0.427	0.605	nan	1.240	0.761	0.146	1.379	0.186	0.225	0.119	1.086	0.059	0.109	0.069	0.776
1871	chr12	24997844	25015034	+	0	NA	intron (NM_005504, intron 5 of 10)	L1PA17|LINE|L1	48883	NM_001178094	586	Hs.438993	NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding	nan	nan	nan	0.340	0.237	0.124	0.111	0.201	0.043	0.473	0.215	0.077	0.341	0.082	0.109	0.866	0.356	1.174	0.630	0.390	0.530	0.119	0.113	11.275	12.079	0.514	0.695	0.902	1.055	0.471	0.252	0.477	0.668	0.171	0.230	0.336	0.712	1.269	0.655	0.013	0.108	0.049	0.309	0.111	0.077	0.011	0.035	0.168	0.093
5209	chr22	24551624	24571225	+	0	NA	intron (NM_001199281, intron 30 of 36)	intron (NM_001199281, intron 30 of 36)	-16020	NM_019601	56241	Hs.131819	NM_019601	ENSG00000099994	SUSD2	BK65A6.2	sushi domain containing 2	protein-coding	1.122	nan	1.700	0.237	0.415	0.212	0.460	0.366	0.137	0.205	0.073	0.312	0.294	0.270	0.064	1.143	1.787	0.472	0.539	0.611	0.604	0.674	0.213	1.856	1.790	0.729	1.321	0.411	0.620	0.763	0.800	0.401	0.598	0.243	0.439	0.413	0.607	3.463	1.856	0.020	0.118	0.049	0.073	0.460	0.312	0.138	0.305	0.142	0.213
7843	chr8	102497287	102527982	+	0	NA	intron (NM_001330593, intron 1 of 15)	intron (NM_001330593, intron 1 of 15)	7966	NM_024915	79977	Hs.661088	NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|TFCP2L3	grainyhead like transcription factor 2	protein-coding	1.484	nan	nan	2.120	0.792	0.390	0.262	0.349	0.089	0.404	0.250	3.290	5.443	0.025	0.074	2.156	2.485	3.518	5.704	2.826	2.448	nan	0.728	5.605	5.976	1.031	nan	7.897	nan	nan	0.216	2.439	3.895	0.467	0.568	0.327	nan	1.186	0.806	2.120	0.145	0.075	0.761	0.262	3.290	0.038	0.515	1.278	0.225
4463	chr2	109335109	109345615	+	0	NA	intron (NM_006267, intron 1 of 28)	(ATTG)n|Simple_repeat|Simple_repeat	4425	NM_006267	5903	Hs.199561	NM_006267	ENSG00000153201	RANBP2	ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2	RAN binding protein 2	protein-coding	2.817	nan	2.466	1.945	1.491	0.693	1.470	0.660	0.200	1.062	0.770	1.931	2.261	1.044	0.124	1.766	1.771	1.999	3.098	4.038	3.428	3.968	1.852	4.552	4.895	1.726	2.119	3.031	4.965	3.090	3.758	1.483	2.004	1.081	1.073	4.982	8.194	1.515	0.825	0.758	0.573	0.126	0.712	1.470	1.931	0.582	1.107	0.482	3.099
2795	chr14	105249183	105272195	+	0	NA	promoter-TSS (NM_005163)	promoter-TSS (NM_005163)	-751	NM_005163	207	Hs.525622	NM_005163	ENSG00000142208	AKT1	AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA	AKT serine/threonine kinase 1	protein-coding	1.913	1.313	4.784	1.245	0.847	0.488	1.634	0.828	0.149	0.496	0.230	0.739	2.074	1.215	0.108	1.066	2.025	1.123	1.624	3.244	2.942	2.603	0.757	0.605	0.477	0.776	1.372	2.126	3.329	1.502	1.530	1.193	1.551	0.732	0.726	0.553	0.711	1.608	0.833	3.753	0.320	0.132	0.217	1.634	0.739	0.281	0.483	0.402	0.182
4830	chr20	6446089	6452115	+	0	NA	intron (NR_109953, intron 2 of 3)	intron (NR_109953, intron 2 of 3)	41723	NR_109953	101929244	Hs.542488	NR_109953	ENSG00000229876	CASC20	-	cancer susceptibility candidate 20 (non-protein coding)	ncRNA	0.767	1.226	0.660	0.263	0.149	0.136	0.214	0.050	0.111	0.086	0.095	0.040	0.258		0.048	0.642	0.338	8.872	2.173	0.307	0.409	0.537	0.172	10.398	10.328	0.322	0.450	0.813	0.608	0.498	0.321	0.292	0.646	0.203	0.177	0.389	0.805	0.585	0.388	0.009	0.074	0.032		0.214	0.040	0.032	0.169	0.148	0.062
8123	chr9	36861879	36873739	+	0	NA	intron (NM_001280549, intron 6 of 7)	intron (NM_001280549, intron 6 of 7)	-3504	NR_039766	100616278		NR_039766	ENSG00000264922	MIR4540	-	microRNA 4540	ncRNA	0.874	nan	1.121	0.611	1.991	0.871	0.312	0.070	0.014	0.715	0.314	1.021	2.639	0.018	0.067	0.654	1.039	0.178	0.268	1.679	2.000	2.546	0.624	0.165	0.200	0.473	0.974	1.105	1.148	0.631	0.665	0.820	1.276	2.272	1.924	0.266	0.444	3.724	1.973	1.360	0.331	0.838	0.179	0.312	1.021	0.187	0.540	0.492	0.136
3912	chr18	75562015	75572924	+	0	NA	Intergenic	Intergenic	138214	NR_104127	101927715	Hs.385670	NR_104127		LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA	nan	nan	0.474	0.064	7.252	3.279	0.836	0.062	0.044	0.302	0.181	4.449	0.777	0.040	0.093	0.245	0.192	0.206	0.233	3.648	nan	7.300	2.910	0.125	0.178	0.092	0.187	3.345	nan	0.368	0.196	0.066	0.163	0.423	0.224	0.125	0.175	1.728	1.194	0.098	0.539	0.018	0.639	0.836	4.449		0.028	0.018	0.044
6500	chr5	147237864	147249458	+	0	NA	Intergenic	LTR75|LTR|ERVL	-14613	NM_054023	117156	Hs.483765	NM_054023	ENSG00000164265	SCGB3A2	LU103|PNSP1|UGRP1|pnSP-1	secretoglobin family 3A member 2	protein-coding	nan	0.722	0.800	0.228	0.216	0.152	0.177	0.097	0.055	0.055	0.050	0.209	0.634	0.028	0.099	0.253	0.148	0.706	0.822	0.256	0.372	0.355	0.150	0.163	0.169	0.175	0.379	0.424	0.337	0.324	0.177	0.185	0.258	4.072	4.811	0.279	0.599	0.523	0.388	0.063	0.114	1.236	0.089	0.177	0.209	0.075	0.071	0.077	0.022
6637	chr6	18260459	18280603	+	0	NA	Intergenic	Intergenic	-5732	NM_001134709	7913	Hs.484813	NM_003472	ENSG00000124795	DEK	D6S231E	DEK proto-oncogene	protein-coding	2.848	nan	2.103	2.104	2.260	0.945	2.273	1.693	0.359	1.006	0.557	2.713	4.808	1.105	0.113	2.049	1.970	2.603	4.406	3.446	3.382	2.723	1.497	3.310	3.496	2.254	2.794	2.385	3.455	3.303	3.520	1.513	2.554	2.684	2.804	2.713	2.917	1.681	0.949	2.308	1.218	0.824	1.236	2.273	2.713	0.310	1.062	0.883	1.173
784	chr1	202873617	202897477	+	0	NA	intron (NM_021633, intron 4 of 11)	AluSx1|SINE|Alu	10853	NM_021633	59349	Hs.706793	NM_021633	ENSG00000117153	KLHL12	C3IP1|DKIR	kelch like family member 12	protein-coding	1.657	1.627	1.548	0.521	4.922	2.682	0.521	0.481	0.203	1.886	1.174	0.674	1.255	0.545	0.141	1.034	0.989	1.392	2.180	1.448	1.626	3.068	1.287	nan	nan	1.119	1.542	1.225	1.436	0.878	0.665	0.395	0.532	1.749	2.553	1.095	1.664	3.766	1.541	0.268	0.972	0.311	0.106	0.521	0.674	0.140	0.246	0.091	0.395
7601	chr8	13915115	13920809	+	0	NA	Intergenic	LTR16A|LTR|ERVL	430763	NR_134450	102725080	Hs.130621	NR_134450		LOC102725080	-	uncharacterized LOC102725080	ncRNA	0.457	0.647	nan	0.031	0.144	0.115	0.066	0.053	0.113	0.033	0.057	0.064	0.035	0.047	0.125	0.877	0.654	9.392	4.689	0.328	nan	0.105	0.045	0.214	0.137	0.070	0.138	0.189	0.142	0.289	0.181	0.112	0.138	0.078	0.102	0.119	0.225	0.983	0.641		0.046	0.016		0.066	0.064		0.078		0.077
6300	chr5	69195370	69201131	+	0	NA	Intergenic	Intergenic	-122822	NM_021967	8293	Hs.726820	NM_021967	ENSG00000172058	SERF1A	4F5|FAM2A|H4F5|SERF1|SMAM1	small EDRK-rich factor 1A	protein-coding	3.624	8.398	2.891	0.979	0.518	0.306	0.617	0.310	0.306	0.807	0.386	0.410	0.430	0.130	0.103	0.526	0.784	1.011	1.298	0.949	0.813	4.379	1.474	0.985	0.818	1.290	2.109	1.075	2.108	1.842	1.559	0.291	0.469	4.354	4.412	0.704	1.024	1.530	1.047	0.385	0.453	2.111	0.454	0.617	0.410	0.323	0.195	0.066	0.277
1844	chr12	13876980	13884371	+	0	NA	intron (NM_000834, intron 3 of 12)	intron (NM_000834, intron 3 of 12)	252347	NM_000834	2904	Hs.504844	NM_000834	ENSG00000273079	GRIN2B	EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|hNR3	glutamate ionotropic receptor NMDA type subunit 2B	protein-coding	0.598	0.735	1.730	0.189	0.739	0.411	2.155	0.082	0.022	0.785	0.333	0.955	2.227	0.103	0.156	0.317	0.269	6.998	2.164	nan	2.344	3.233	1.010	0.769	0.757	0.968	1.207	0.226	0.210	0.392	0.243	0.205	0.223	1.472	1.642	0.323	0.634	1.644	0.808	0.510	0.140	0.373	0.011	2.155	0.955			0.067	0.058
5765	chr3	189428521	189443463	+	0	NA	intron (NM_001114978, intron 1 of 12)	intron (NM_001114978, intron 1 of 12)	-71457	NM_001114980	8626	Hs.137569	NM_003722	ENSG00000073282	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding	1.496	1.338	1.039	0.306	0.816	0.283	0.172	3.390	0.231	0.247	0.214	0.132	1.117	0.036	0.085	0.387	0.176	0.309	0.941	0.386	0.475	6.978	2.097	0.342	0.343	0.244	0.355	1.006	1.727	0.795	0.485	0.115	0.181	1.140	1.248	1.174	3.217	1.422	0.650	0.056	0.092	0.223	0.101	0.172	0.132	0.072	0.115	0.020	0.912
7186	chr7	18530531	18633947	+	0	NA	intron (NM_001204148, intron 1 of 10)	L1M5|LINE|L1	33343	NM_001204148	9734	Hs.196054	NM_014707	ENSG00000048052	HDAC9	HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding	nan	1.535	nan	0.195	0.343	0.188	0.273	1.237	0.143	0.646	0.511	0.084	0.803	0.955	0.186	nan	0.813	4.306	6.541	1.076	1.136	1.094	0.431	0.528	0.551	2.641	3.094	0.491	0.533	0.451	0.259	0.192	0.407	0.821	0.862	0.645	1.526	0.933	0.590	0.222	0.764	0.212	0.317	0.273	0.084	0.054	0.299	0.163	0.112
762	chr1	198495650	198513996	+	0	NA	intron (NM_133262, intron 2 of 3)	MIR|SINE|MIR	5252	NM_133262	127124	Hs.127743	NM_133262	ENSG00000151418	ATP6V1G3	ATP6G3|Vma10	ATPase H+ transporting V1 subunit G3	protein-coding	1.044	nan	1.301	0.151	0.487	0.173	1.250	0.764	0.114	0.784	0.594	0.072	0.561	0.032	0.106	0.580	0.452	0.515	0.597	0.572	0.644	0.975	0.232	0.308	0.343	2.735	nan	0.279	0.325	0.630	0.303	0.052	0.178	2.290	2.212	0.907	2.077	0.874	0.697	0.023	0.089	0.582	0.039	1.250	0.072	0.180	0.016	0.021	0.394
4619	chr2	178351452	178421646	+	0	NA	intron (NM_003659, intron 18 of 19)	intron (NM_003659, intron 18 of 19)	30975	NM_152517	150737	Hs.447659	NM_152517	ENSG00000196659	TTC30B	IFT70|IFT70B|fleer	tetratricopeptide repeat domain 30B	protein-coding	1.408	1.070	1.680	0.512	0.600	0.328	0.353	0.259	0.067	0.358	0.303	0.446	1.031	0.179	0.087	0.596	0.742	0.824	1.537	0.638	0.642	1.357	0.589	0.721	0.749	5.235	5.909	1.287	1.558	1.106	0.831	0.277	0.562	0.825	1.015	0.912	1.497	0.539	0.394	0.375	0.199	0.245	0.125	0.353	0.446	0.283	0.220	0.124	0.292
5281	chr22	41830006	41846182	+	0	NA	intron (NM_016272, intron 1 of 1)	AluSx|SINE|Alu	4933	NM_016272	10766	Hs.474978	NM_016272	ENSG00000183864	TOB2	APRO5|TOB4|TOBL|TROB2	transducer of ERBB2, 2	protein-coding	3.624	nan	2.372	2.161	4.190	2.256	2.911	1.414	0.308	1.297	0.607	3.418	4.304	3.825	0.149	2.305	3.165	3.094	4.538	3.813	3.483	3.345	1.289	3.550	3.371	2.587	nan	3.338	4.064	nan	5.163	0.931	2.422	3.842	3.737	2.602	5.445	1.367	0.802	1.315	1.992	1.204	1.718	2.911	3.418	1.296	2.155	1.019	2.402
6118	chr5	77084	109611	+	0	NA	Intergenic	Intergenic	-47026	NM_052909	153478	Hs.535800	NM_052909	ENSG00000153404	PLEKHG4B	-	pleckstrin homology and RhoGEF domain containing G4B	protein-coding	0.892	1.242	1.945	1.340	0.739	0.439	0.931	0.233	0.242	1.111	0.679	2.214	2.287	0.368	0.159	3.052	3.083	1.067	nan	5.935	5.812	1.851	0.839	1.270	1.397	1.212	1.790	nan	5.105	nan	1.497	1.576	1.951	0.556	0.588	0.080	0.135	2.695	nan	1.179	1.909	0.134	0.432	0.931	2.214	0.660	0.087	0.907	0.031
5708	chr3	178334379	178343748	+	0	NA	intron (NM_001278911, intron 1 of 4)	intron (NM_001278911, intron 1 of 4)	62575	NM_001278911	10242	Hs.478368	NM_005832	ENSG00000197584	KCNMB2	-	potassium calcium-activated channel subfamily M regulatory beta subunit 2	protein-coding	1.914	1.798	1.265	0.677	3.724	1.729	0.462	0.497	0.103	2.401	1.264	0.496	0.494	0.072	0.102	0.325	0.229	0.227	0.428	0.386	0.488	2.456	0.744	0.270	0.359	1.116	1.470	1.184	0.858	0.972	0.590	0.170	0.224	2.094	3.260	1.461	3.972	0.753	0.536	0.090	0.266	0.529	4.740	0.462	0.496	0.656	0.552	0.073	0.619
2205	chr12	128040686	128057191	+	0	NA	Intergenic	L1MD2|LINE|L1	72074	NR_120451	101927637	Hs.170413	NR_120451	ENSG00000256022	LOC101927637	-	uncharacterized LOC101927637	ncRNA	0.627	0.666	0.550	1.920	1.198	0.512	0.268	0.077	0.098	1.296	0.594	1.086	0.663	0.019	0.097	0.372	0.293	0.163	0.174	1.523	1.725	nan	3.732	0.280	0.337	0.524	0.650	7.564	6.814	0.307	0.127	0.152	0.252	1.009	1.311	0.157	0.197	2.484	1.559	0.320	0.114	0.098	0.014	0.268	1.086	0.040	2.603	0.059	0.022
8071	chr9	16521316	16534954	+	0	NA	intron (NM_001317939, intron 4 of 6)	intron (NM_001317939, intron 4 of 6)	-251824	NR_073471	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding	nan	nan	0.728	0.103	0.249	0.106	0.293	0.555	0.188	0.115	0.161	0.052	0.401	0.367	0.117	0.255	0.328	0.553	1.302	0.377	0.484	0.190	0.116	0.116	0.143	3.213	3.854	0.120	0.124	0.427	0.239	1.446	1.510	0.697	0.957	0.146	0.286	1.054	0.944	0.020	0.072	0.126	0.035	0.293	0.052	0.186	0.298	1.094	0.109
7965	chr8	141516439	141523813	+	0	NA	Intergenic	Intergenic	-1271	NM_017444	54108	Hs.279704	NM_017444	ENSG00000104472	CHRAC1	CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1	chromatin accessibility complex 1	protein-coding	7.001	2.987	nan	7.195	7.616	4.647	4.039	2.650	0.479	1.144	0.571	7.086	16.759	2.606	0.162	3.545	4.132	4.941	7.355	nan	11.062	nan	3.933	11.576	11.988	3.770	4.411	5.238	8.374	4.715	5.055	4.096	5.485	5.395	6.436	4.972	3.938	3.759	1.994	7.907	4.969	1.251	1.990	4.039	7.086	0.873	3.623	1.465	1.622
8292	chr9	131680697	131685480	+	0	NA	promoter-TSS (NM_001100876)	promoter-TSS (NM_001100876)	-86	NM_174933	254295	Hs.709447	NM_174933	ENSG00000175287	PHYHD1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	nan	1.039	1.822	0.993	1.844	0.846	0.323	0.263	0.067	0.198	0.151	0.247	0.654	0.023	0.080	0.163	0.256	0.777	1.036	0.841	0.784	nan	0.110	0.223	0.229	0.707	0.962	0.712	0.667	7.873	7.073	0.165	0.273	0.354	0.289	4.506	8.223	3.221	1.168	0.158	0.111	0.059	0.034	0.323	0.247	0.692	6.727		4.438
6349	chr5	87681036	87706579	+	0	NA	intron (NR_105020, intron 1 of 2)	intron (NR_105020, intron 1 of 2)	5795	NR_105020	100505894	Hs.559426	NR_039993	ENSG00000247828	TMEM161B-AS1	linc-POLR3G-8	TMEM161B antisense RNA 1	ncRNA	0.926	1.247	0.776	0.076	0.201	0.132	0.125	1.892	0.183	0.101	0.115	0.047	0.287	0.050	0.104	0.246	0.186	0.478	0.416	0.124	0.174	0.108	0.036	0.125	0.124	0.750	0.976	0.182	0.214	0.508	0.315	0.106	0.203	11.888	14.262	0.422	nan	0.275	0.319	0.015	0.073	4.275	0.167	0.125	0.047	0.034	0.210	0.046	0.232
7593	chr8	11242635	11251483	+	0	NA	intron (NR_026814, intron 2 of 6)	intron (NR_026814, intron 2 of 6)	21148	NR_026814	83656	Hs.583896	NM_054017	ENSG00000184608	FAM167A-AS1	C8orf12	FAM167A antisense RNA 1	ncRNA	0.571	0.722	nan	1.513	0.394	0.198	0.377	0.084	0.038	0.191	0.111	4.900	0.278	0.082	0.069	0.282	0.231	0.119	0.141	4.849	nan	8.222	2.758	0.384	0.490	0.213	0.328	2.497	2.275	0.258	0.169	0.071	0.211	0.764	0.483	0.162	0.207	5.155	2.482	0.182	0.603	0.097	0.052	0.377	4.900	0.045	0.125	0.011	0.037
22	chr1	1607590	1628990	+	0	NA	intron (NM_001110781, intron 1 of 8)	AluY|SINE|Alu	5953	NM_001290264	728661	Hs.655255	NM_001110781	ENSG00000189339	SLC35E2B	SLC35E2	solute carrier family 35 member E2B	protein-coding	2.065	nan	2.310	2.433	1.758	0.802	0.921	0.989	0.437	0.685	0.395	1.105	2.322	1.398	0.193	2.491	2.687	1.906	2.931	4.321	4.447	1.965	1.085	4.372	4.635	1.950	nan	nan	7.418	nan	2.192	1.660	2.220	1.388	1.396	2.228	2.202	1.471	0.668	1.364	1.910	0.317	0.397	0.921	1.105	0.862	0.756	0.645	0.692
205	chr1	36394275	36406963	+	0	NA	intron (NM_024852, intron 1 of 18)	intron (NM_024852, intron 1 of 18)	3936	NM_177422	192669	Hs.657659	NM_024852	ENSG00000126070	AGO3	EIF2C3	argonaute 3, RISC catalytic component	protein-coding	2.491	nan	1.775	3.811	1.513	0.858	1.190	1.298	0.190	1.088	0.677	3.227	3.218	1.429	0.141	2.590	3.367	2.063	2.958	3.640	3.739	nan	0.826	5.171	5.243	2.592	3.329	5.912	8.015	nan	1.661	5.619	9.645	0.865	0.799	1.885	2.368	1.366	nan	1.311	1.106	0.217	1.100	1.190	3.227	0.368	0.856	3.958	0.879
3296	chr17	16881037	16887943	+	0	NA	Intergenic	L2a|LINE|L2	-9088	NM_012452	23495	Hs.158341	NM_012452	ENSG00000240505	TNFRSF13B	CD267|CVID|CVID2|IGAD2|RYZN|TACI|TNFRSF14B	TNF receptor superfamily member 13B	protein-coding	0.820	0.656	2.203	0.241	0.230	0.116	0.287	0.022	0.047	0.070	0.123	0.069	0.392	0.047	0.036	0.493	0.456	0.197	nan	1.673	1.199	4.586	0.813	0.135	0.144	0.149	0.301	0.515	0.570	nan	1.319	0.149	0.192	0.959	1.122	0.377	0.606	0.471	0.311	0.024	0.077	0.125		0.287	0.069	0.506	6.466	0.043	0.108
5730	chr3	182105155	182116120	+	0	NA	Intergenic	Intergenic	93513	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA	0.992	1.148	0.893	4.625	0.617	0.395	0.258	0.097	0.089	1.058	0.563	0.544	1.550	0.056	0.055	0.292	0.264	0.148	0.298	0.598	0.962	4.299	1.111	0.181	0.131	0.456	0.673	3.223	3.022	0.566	0.299	0.161	0.206	1.971	1.395	0.158	0.265	1.889	0.895	0.273	0.974	0.226	4.589	0.258	0.544	0.044	0.454	0.018	0.125
2681	chr14	76420889	76449245	+	0	NA	intron (NM_001329939, intron 4 of 7)	intron (NM_001329939, intron 4 of 7)	13298	NM_003239	7043	Hs.592317	NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding	2.633	0.734	2.246	0.272	0.416	0.244	0.469	1.149	0.197	0.116	0.122	0.364	0.537	0.177	0.108	0.342	0.406	0.507	0.925	0.647	0.726	0.543	0.182	1.025	1.078	1.346	2.216	0.684	nan	4.497	3.696	0.346	0.442	0.425	0.406	0.492	1.099	1.311	nan	0.087	0.273	0.101	1.033	0.469	0.364	1.350	0.190	0.059	0.292
8013	chr9	2156104	2162767	+	0	NA	intron (NM_001289400, intron 1 of 7)	intron (NM_001289400, intron 1 of 7)	979	NM_001289400	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.730	1.767	0.826	0.145	1.890	1.028	0.306	1.528	0.196	4.300	2.135	2.452	0.490	0.244	0.061	0.812	0.645	3.410	8.174	0.758	0.880	9.606	3.843	0.434	0.488	1.024	1.559	0.642	0.773	2.429	1.813	0.889	1.325	3.344	3.839	0.268	nan	8.279	5.024	0.841	1.729	0.313	0.118	0.306	2.452	0.132	0.534	0.788	0.075
1260	chr10	132956156	132965609	+	0	NA	intron (NM_174937, intron 6 of 11)	intron (NM_174937, intron 6 of 11)	67401	NR_120623	101927489		NR_120623	ENSG00000230098	TCERG1L-AS1	-	TCERG1L antisense RNA 1	ncRNA	0.503	1.107	0.797	0.430	8.535	4.832	0.531	0.095	0.041	0.232	0.271	1.952	0.614	0.034	0.072	0.256	0.129	0.028	0.120	0.430	0.512	0.949	0.315	0.088	0.064	0.035	0.127	1.545	1.686	0.155	0.125	0.194	0.259	0.283	0.294	0.045	0.086	1.709	0.723	0.301	0.373	0.110	0.050	0.531	1.952	0.155	0.043	0.032	0.013
874	chr1	218831147	218856096	+	0	NA	intron (NR_031644, intron 3 of 6)	intron (NR_031644, intron 3 of 6)	227653	NR_125715	103611157	Hs.133379	NR_125715	ENSG00000281453	TGFB2-OT1	-	TGFB2 overlapping transcript 1	ncRNA	1.265	1.068	1.518	0.184	0.333	0.193	0.338	0.641	0.156	0.132	0.145	0.084	nan	0.125	0.101	0.347	0.204	1.275	4.400	0.357	0.416	nan	0.080	0.294	0.263	0.115	nan	0.383	0.377	0.536	0.371	0.078	0.134	0.482	1.106	0.308	0.698	0.967	0.737	0.020	0.057	0.103	0.070	0.338	0.084	0.023	0.134	0.027	0.105
1708	chr11	122526218	122546715	+	0	NA	intron (NM_032873, intron 1 of 13)	intron (NM_032873, intron 1 of 13)	10068	NM_032873	84959	Hs.444075	NM_032873	ENSG00000154127	UBASH3B	STS-1|STS1|TULA-2|TULA2|p70	ubiquitin associated and SH3 domain containing B	protein-coding	1.217	2.554	2.476	0.074	0.270	0.086	1.182	0.099	0.086	0.133	0.201	0.528	1.814	0.444	0.079	0.277	0.173	0.731	1.234	0.995	0.885	0.202	0.101	0.766	0.732	2.412	3.439	0.127	0.172	0.826	0.717	0.426	0.807	0.687	0.375	0.076	nan	2.137	1.137	0.269	0.394	0.093	2.598	1.182	0.528	0.911	0.015	0.149	0.006
2220	chr12	133286274	133288686	+	0	NA	promoter-TSS (NM_138575)	promoter-TSS (NM_138575)	87	NM_001170543	192111	Hs.102558	NM_138575	ENSG00000247077	PGAM5	BXLBV68	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein-coding	3.526	3.676	3.825	5.598	6.196	4.159	4.196	1.336	0.342	3.894	2.193	6.262	11.267	5.919	0.113	4.631	5.325	6.803	10.273	8.002	7.918	8.369	3.392	10.675	10.411	4.382	6.348	9.860	15.138	4.819	5.754	4.630	9.696	6.216	6.400	5.793	6.195	5.343	2.983	2.934	4.723	0.869	14.113	4.196	6.262	1.286	5.643	1.214	1.437
2528	chr14	30618773	30630531	+	0	NA	Intergenic	Intergenic	-227704	NM_001330069	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding	1.350	0.813	0.665	0.156	0.345	0.164	0.262	0.331	0.217	0.107	0.176	0.183	0.336	0.037	0.148	0.133	0.092	0.193	0.157	0.378	0.377	0.236	0.100	0.217	0.225	5.383	5.608	0.329	0.286	0.751	0.390	0.107	0.135	1.083	0.756	0.260	0.355	0.425	0.504	0.080	0.068	0.161	0.122	0.262	0.183	0.172	0.086	0.033	0.063
1591	chr11	95635417	95669299	+	0	NA	intron (NM_001243571, intron 1 of 17)	intron (NM_001243571, intron 1 of 17)	5013	NM_001243571	8898	Hs.181326	NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding	0.993	nan	0.804	0.579	0.441	0.209	0.412	0.291	0.067	0.393	0.304	0.392	0.988	0.446	0.160	2.345	2.134	1.005	nan	1.105	1.106	1.762	0.623	11.770	12.267	1.477	1.777	0.758	0.840	1.340	1.179	1.041	1.573	0.767	1.068	0.921	nan	1.144	0.754	0.265	0.170	0.124	0.225	0.412	0.392	0.096	0.291	0.449	0.331
8043	chr9	10604162	10615585	+	0	NA	intron (NM_002839, intron 2 of 45)	intron (NM_002839, intron 2 of 45)	2850	NM_002839	5789	Hs.446083	NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type D	protein-coding	nan	nan	0.696	0.182	0.652	0.283	2.241	0.105	0.125	0.424	0.304	0.891	0.842	0.009	0.073	0.432	0.669	1.224	1.473	0.334	0.411	2.663	1.250	0.217	0.226	5.565	5.902	0.479	0.619	0.835	0.993	0.139	0.295	1.065	0.821	0.108	0.159	2.953	1.800	0.024	0.054	0.316	0.021	2.241	0.891	0.126	0.081	0.043	0.011
1677	chr11	117326193	117374444	+	0	NA	intron (NM_020693, intron 14 of 32)	intron (NM_020693, intron 14 of 32)	151747	NM_014956	22897	Hs.504009	NM_014956	ENSG00000110274	CEP164	NPHP15	centrosomal protein 164	protein-coding	0.681	0.781	0.631	0.493	0.834	0.408	0.459	0.037	0.040	0.677	0.512	1.964	1.254	0.078	0.095	0.524	nan	0.237	0.335	1.798	1.867	2.147	0.609	0.209	0.249	0.469	nan	2.209	1.529	0.747	0.590	1.025	1.370	0.396	0.326	0.361	0.782	1.711	0.884	4.901	0.647	0.069	0.389	0.459	1.964	0.233	0.385	0.320	0.258
2174	chr12	119870677	119887335	+	0	NA	intron (NM_178499, intron 2 of 13)	intron (NM_178499, intron 2 of 13)	106489	NM_178499	160777	Hs.98188	NM_178499	ENSG00000183273	CCDC60	-	coiled-coil domain containing 60	protein-coding	nan	nan	0.500	0.068	0.718	0.304	0.780	0.068	0.077	0.281	0.124	0.293	0.900	0.051	0.097	0.240	0.187	0.175	0.130	nan	nan	nan	0.668	0.124	0.097	0.509	0.720	nan	nan	0.549	0.300	0.152	0.132	0.165	0.277	0.228	0.272	nan	1.799	0.030	0.150	0.029	0.052	0.780	0.293	0.161	1.414	0.006	0.081
1320	chr11	13115590	13139183	+	0	NA	Intergenic	Intergenic	96416	NM_001080521	644943	Hs.134650	NM_001080521	ENSG00000189431	RASSF10	-	Ras association domain family member 10	protein-coding	0.716	nan	1.213	1.621	0.939	0.632	0.709	0.129	0.048	0.600	0.274	5.293	1.733	0.037	0.081	nan	1.773	1.131	1.799	4.569	4.712	3.346	1.206	0.700	0.693	0.310	nan	1.942	1.426	0.999	0.852	0.506	0.654	0.981	0.649	0.450	1.302	1.703	nan	0.340	0.562	0.141	0.839	0.709	5.293	0.095	0.095	0.357	0.179
8417	chrX	152225035	152248479	+	0	NA	Intergenic	Intergenic	-4040	NM_032882	84968	Hs.533301	NM_032882	ENSG00000235961	PNMA6A	MA6|PNMA6|PNMA6C	paraneoplastic Ma antigen family member 6A	protein-coding	0.263	2.032	0.415	0.835	0.231	0.116	0.465	0.019	0.020	0.146	0.067	0.108	1.685	0.124	0.020	0.098	0.127	0.202	0.250	0.691	0.639	0.381	0.069	0.076	0.102	0.076	0.181	0.068	0.054	0.508	0.351	0.369	0.356	0.040	0.045	0.119	0.224	0.644	0.412	2.869	1.234	0.020	0.031	0.465	0.108	0.141		0.093	0.016
7814	chr8	97851326	97936967	+	0	NA	intron (NM_016134, intron 4 of 7)	intron (NM_016134, intron 4 of 7)	236691	NM_016134	10404	Hs.156178	NM_016134	ENSG00000104324	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding	nan	3.736	6.711	0.206	0.485	0.219	0.253	0.983	0.124	0.062	0.054	0.653	0.580	0.056	0.088	0.310	0.196	0.435	nan	0.836	0.962	1.047	0.392	0.254	0.237	0.429	0.761	1.094	1.060	0.625	0.414	0.175	0.263	0.256	0.378	6.079	12.781	0.297	0.369	0.029	0.174	0.087	0.163	0.253	0.653	0.112	0.038	0.052	4.735
1026	chr10	12745036	12765080	+	0	NA	intron (NM_020397, intron 3 of 9)	intron (NM_020397, intron 3 of 9)	12294	NR_031752	100313841		NR_031752	ENSG00000221331	MIR548Q	-	microRNA 548q	ncRNA	nan	1.017	0.474	1.408	0.586	0.304	0.570	1.404	0.194	0.633	0.322	1.073	1.461	0.103	0.087	0.456	0.311	1.148	3.439	1.000	0.969	7.060	3.181	0.223	0.270	0.616	1.027	2.332	3.042	0.341	0.273	0.354	0.385	0.383	0.618	0.307	0.888	0.839	0.477	0.474	0.529	0.076	0.162	0.570	1.073	0.134	0.305	0.069	0.154
5606	chr3	150318727	150322757	+	0	NA	promoter-TSS (NM_016275)	promoter-TSS (NM_016275)	-324	NM_016275	51714	Hs.369052	NM_016275	ENSG00000198843	SELENOT	SELT	selenoprotein T	protein-coding	6.189	3.644	3.774	5.294	6.307	3.662	3.886	4.645	0.240	4.198	2.045	5.218	5.671	2.416	0.097	5.135	4.670	6.219	9.058	7.434	7.402	11.811	6.121	11.978	13.133	6.677	7.764	5.844	8.991	15.243	13.164	5.128	9.101	2.544	2.896	5.804	6.675	3.548	2.080	3.098	3.380	0.380	2.799	3.886	5.218	1.468	1.931	2.482	2.872
1390	chr11	41287811	41346566	+	0	NA	intron (NM_001258419, intron 1 of 6)	intron (NM_001258419, intron 1 of 6)	163998	NM_001258419	57689	Hs.745123	NM_020929	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding	nan	0.823	0.604	0.074	0.309	0.186	0.072	0.086	0.074	0.303	0.169	0.051	0.312	3.515	0.167	0.448	0.360	0.163	0.232	0.211	0.309	2.203	1.150	0.137	0.117	0.202	0.331	0.280	0.291	0.239	0.101	0.155	0.212	0.990	0.838	0.341	nan	1.336	0.753	0.025	0.294	0.128	0.061	0.072	0.051	0.015	0.049	0.042	0.101
3544	chr17	72423257	72451343	+	0	NA	intron (NM_018653, intron 2 of 3)	AluSz|SINE|Alu	7464	NM_018653	55890	Hs.446438	NM_018653	ENSG00000170412	GPRC5C	RAIG-3|RAIG3	G protein-coupled receptor class C group 5 member C	protein-coding	3.502	1.654	3.308	1.143	1.249	0.659	0.955	0.106	0.080	0.174	0.171	1.717	3.450	0.371	0.097	1.266	1.484	1.074	1.429	2.148	1.634	0.376	0.138	0.089	0.084	nan	1.166	4.379	5.254	2.300	2.460	0.812	1.117	1.173	1.276	0.382	0.600	nan	0.799	1.172	1.276	0.132	0.432	0.955	1.717	0.746	2.459	0.766	0.079
1469	chr11	65234823	65278884	+	0	NA	Intergenic	Intergenic	-8356	NR_144567	378938	Hs.621695	NR_002819		MALAT1	HCN|LINC00047|NCRNA00047|NEAT2|PRO2853	metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)	ncRNA	nan	5.178	2.823	5.361	6.029	3.243	4.439	3.126	0.691	3.213	1.435	5.253	9.932	8.527	0.288	7.859	10.469	3.015	5.853	9.875	8.078	7.644	3.832	8.429	8.788	5.928	7.464	8.264	9.537	7.120	7.105	6.498	12.284	9.450	9.569	3.657	5.052	3.270	1.865	5.618	7.761	1.907	2.399	4.439	5.253	1.306	3.831	4.494	1.467
4674	chr2	205008212	205020026	+	0	NA	Intergenic	Intergenic	212648	NM_012092	29851	Hs.56247	NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T-cell costimulator	protein-coding	1.352	nan	0.725	0.312	1.057	0.529	0.432	0.076	0.109	0.265	0.261	0.655	0.568	0.009	0.089	0.885	0.827	0.350	0.380	0.547	0.722	1.153	0.317	23.515	24.650	0.463	0.812	0.515	0.582	0.394	0.208	0.392	0.360	0.226	0.243	0.250	0.516	0.795	0.662	0.084	0.106	0.048	0.176	0.432	0.655	0.107	0.057	0.117	0.147
1268	chr11	742638	750009	+	0	NA	Intergenic	AluSq|SINE|Alu	-1109	NM_006755	6888	Hs.438678	NM_006755	ENSG00000177156	TALDO1	TAL|TAL-H|TALDOR|TALH	transaldolase 1	protein-coding	1.867	2.581	2.869	1.266	1.823	0.799	1.445	1.115	0.328	1.336	0.618	3.602	3.657	0.897	0.057	8.407	9.716	2.910	4.596	3.661	4.091	3.448	1.112	4.740	4.764	1.506	2.359	2.726	4.853	2.017	1.848	2.692	4.755	1.302	1.675	1.024	1.726	1.567	0.824	0.683	1.973	0.310	0.562	1.445	3.602	0.252	1.187	1.076	0.572
1977	chr12	58202652	58213317	+	0	NA	exon (NM_006576, exon 2 of 19)	exon (NM_006576, exon 2 of 19)	1868	NM_006576	10677	Hs.584854	NM_006576	ENSG00000135407	AVIL	ADVIL|DOC6|p92	advillin	protein-coding	nan	0.718	1.069	1.664	0.772	0.389	0.209	0.189	0.107	0.721	0.351	1.738	0.812	0.031	0.063	nan	4.341	1.389	0.682	3.473	nan	1.888	0.489	6.470	6.557	0.520	nan	9.597	nan	0.671	0.683	2.803	3.934	0.220	0.265	0.424	0.675	3.135	1.663	1.137	0.444	0.054	0.110	0.209	1.738	0.064	0.759	2.834	0.173
2023	chr12	72055219	72060192	+	0	NA	promoter-TSS (NM_031435)	promoter-TSS (NM_031435)	28	NM_031435	83591	Hs.245798	NM_031435	ENSG00000173451	THAP2	-	THAP domain containing 2	protein-coding	nan	2.553	2.837	3.884	3.964	2.453	2.689	2.484	0.208	2.359	1.444	4.664	10.866	3.134	0.135	5.375	5.903	4.988	7.362	11.015	9.424	8.871	4.591	20.926	22.250	5.827	5.930	nan	13.300	5.566	6.921	4.773	7.778	2.918	2.955	7.238	5.930	nan	2.236	1.162	4.848	0.270	2.315	2.689	4.664	1.487	2.700	2.985	2.484
4387	chr2	65214911	65217996	+	0	NA	promoter-TSS (NM_003038)	promoter-TSS (NM_003038)	-42	NM_003038	6509	Hs.654352	NM_003038	ENSG00000115902	SLC1A4	ASCT1|SATT|SPATCCM	solute carrier family 1 member 4	protein-coding	7.931	3.517	4.487	6.115	7.785	4.211	7.052	4.258	0.519	3.334	1.537	7.084	18.683	6.073	0.097	4.300	5.874	5.922	7.372	14.729	10.509	12.142	5.265	11.812	13.145	3.572	4.571	8.783	15.913	5.850	7.398	3.084	6.014	3.640	3.702	6.288	7.586	5.813	3.523	10.674	19.043	0.715	3.142	7.052	7.084	1.574	4.256	1.618	2.394
8331	chr9	138329292	138354891	+	0	NA	Intergenic	Intergenic	22004	NR_038969	100506599	Hs.561897	NR_038969	ENSG00000225361	PPP1R26-AS1	-	PPP1R26 antisense RNA 1	ncRNA	nan	1.930	1.431	0.241	0.597	0.291	0.141	0.125	0.101	0.092	0.061	0.510	1.838	0.042	0.084	0.268	0.315	0.084	0.139	0.478	0.460	nan	0.083	0.103	0.100	0.117	0.212	0.212	0.228	0.680	0.420	0.241	0.295	0.259	0.228	0.099	0.136	0.362	0.354	4.105	1.378	0.044	0.165	0.141	0.510	0.251	0.040	0.088	0.020
3445	chr17	47066627	47083833	+	0	NA	exon (NM_001160423, exon 1 of 13)	exon (NM_001160423, exon 1 of 13)	456	NM_001160423	10642	Hs.144936	NM_006546	ENSG00000159217	IGF2BP1	CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1	insulin like growth factor 2 mRNA binding protein 1	protein-coding	1.224	1.094	nan	0.184	0.305	0.116	0.112	0.114	0.132	0.073	0.145	0.056	0.374	4.274	0.131	0.330	0.284	0.533	0.763	0.231	nan	0.237	0.116	2.692	2.760	0.242	0.510	4.538	nan	7.279	7.109	0.129	0.194	0.164	0.230	8.073	9.451	0.157	0.262	0.032	2.248	0.039	0.037	0.112	0.056	0.006	0.006	0.046	4.186
1669	chr11	116239031	116261793	+	0	NA	Intergenic	MIRb|SINE|MIR	-259727	NR_135069	101929011	Hs.733911	NR_135069	ENSG00000237937	LOC101929011	-	uncharacterized LOC101929011	ncRNA	0.871	0.952	0.734	0.255	0.428	0.218	1.015	0.030	0.050	0.332	0.317	0.536	1.338	0.033	0.101	0.307	nan	0.070	0.118	0.490	0.514	4.177	1.289	0.117	0.162	0.970	nan	0.717	0.863	1.231	0.795	0.542	0.793	0.527	0.487	1.048	4.203	2.915	1.434	0.936	0.113	0.136	0.123	1.015	0.536	0.098	0.053	0.587	2.903
1825	chr12	10951167	10966147	+	0	NA	TTS (NM_023918)	TTS (NM_023918)	922	NM_023918	50836	Hs.533755	NM_023918	ENSG00000121314	TAS2R8	T2R8|TRB5	taste 2 receptor member 8	protein-coding	0.748	0.652	0.767	0.236	0.189	0.139	0.239	0.040	0.055	0.164	0.153	0.088	0.286	0.043	0.127	0.192	0.165	0.513	0.260	nan	0.433	0.490	0.167	20.824	21.698	0.163	0.252	0.331	0.323	0.278	0.118	0.144	0.217	0.028	0.046	0.189	0.294	0.337	0.209	0.048	0.070	0.013	0.026	0.239	0.088		0.014	0.040	0.058
1285	chr11	3143855	3189743	+	0	NA	intron (NM_145638, intron 1 of 20)	intron (NM_145638, intron 1 of 20)	19783	NM_020896	114879	Hs.436166	NM_020896	ENSG00000021762	OSBPL5	OBPH1|ORP5	oxysterol binding protein like 5	protein-coding	0.694	1.011	1.538	0.106	0.320	0.194	0.357	0.606	0.145	0.058	0.048	3.559	0.773	0.187	0.058	0.677	0.866	0.456	0.625	1.412	1.226	0.438	0.154	0.238	0.250	0.668	1.047	0.140	0.260	0.962	1.229	0.638	0.735	0.163	0.189	0.259	0.303	0.430	0.437	0.227	0.184	0.021	0.114	0.357	3.559	0.142	0.126	0.159	0.089
6401	chr5	108740512	108750475	+	0	NA	intron (NM_014819, intron 1 of 9)	CpG	182	NM_014819	9867	Hs.483036	NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding	2.950	2.337	1.809	1.481	2.265	1.209	1.716	2.221	0.258	1.180	0.658	0.913	4.965	2.590	0.140	1.147	1.685	2.927	4.363	3.428	3.219	2.892	1.262	3.191	3.390	7.732	7.935	2.136	4.263	4.864	4.585	0.716	1.724	5.928	5.520	2.917	3.119	1.885	0.952	1.557	2.338	2.081	1.261	1.716	0.913	0.378	2.266	0.624	0.875
7335	chr7	76080945	76097678	+	0	NA	Intergenic	Intergenic	-1661	NM_001102594	113878	Hs.187058	NM_020892	ENSG00000091073	DTX2	RNF58	deltex E3 ubiquitin ligase 2	protein-coding	nan	1.028	1.152	1.272	0.638	0.363	0.717	0.747	0.338	0.769	0.504	0.988	1.095	0.661	0.178	0.684	0.875	0.612	nan	1.163	1.123	6.071	1.663	0.453	0.484	0.387	nan	0.692	nan	0.703	0.524	0.491	0.816	2.642	3.706	0.637	1.437	4.214	1.750	0.256	0.569	1.310	0.859	0.717	0.988	0.428	0.205	0.154	0.171
3757	chr18	40275322	40289208	+	0	NA	Intergenic	Intergenic	413392	NM_001272077	6014	Hs.464985	NM_002930	ENSG00000152214	RIT2	RIBA|RIN|ROC2	Ras like without CAAX 2	protein-coding	nan	1.071	0.910	0.466	1.067	0.600	0.434	0.037	0.049	0.289	0.241	0.195	0.382	0.023	0.097	0.454	0.329	0.592	1.005	0.666	0.839	6.530	3.261	0.059	0.062	1.161	0.992	3.993	3.633	0.713	0.577	0.075	0.099	1.828	1.315	0.684	nan	1.617	1.174	0.193	0.775	0.224	0.085	0.434	0.195	0.084	0.228	0.024	0.199
1959	chr12	54548793	54568560	+	0	NA	Intergenic	MIRc|SINE|MIR	24065	NM_001243789	23583	Hs.632721	NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding	nan	1.058	2.175	0.148	0.561	0.317	0.667	0.194	0.097	0.254	0.254	0.920	4.402	0.094	0.063	nan	6.887	1.063	1.471	1.130	nan	1.501	0.675	0.922	1.025	1.535	nan	2.898	nan	1.646	1.769	2.864	4.569	3.107	2.488	1.445	3.598	1.543	1.159	0.789	4.685	1.387	0.056	0.667	0.920	0.978	0.339	5.762	1.224
1242	chr10	124757719	124793806	+	0	NA	intron (NM_001330174, intron 1 of 9)	MER57A1|LTR|ERV1	7333	NM_001330174	36	Hs.81934	NM_001609	ENSG00000196177	ACADSB	2-MEBCAD|ACAD7|SBCAD	acyl-CoA dehydrogenase, short/branched chain	protein-coding	nan	0.764	0.881	0.284	0.686	0.351	0.192	0.278	0.125	0.183	0.123	0.492	0.725	0.211	0.096	2.875	2.594	4.559	4.978	0.373	0.392	1.041	0.601	0.754	0.761	0.416	0.642	1.045	1.348	0.462	0.394	2.331	3.765	0.137	0.203	0.763	1.366	0.621	0.502	0.067	0.219	0.026	0.169	0.192	0.492	0.078	0.233	3.086	0.439
1874	chr12	25202943	25254142	+	0	NA	intron (NM_001204126, intron 4 of 19)	intron (NM_001204126, intron 4 of 19)	23361	NM_006152	4033	Hs.124922	NM_006152	ENSG00000118308	LRMP	JAW1	lymphoid restricted membrane protein	protein-coding	nan	nan	nan	0.242	0.167	0.081	0.100	0.078	0.073	0.098	0.145	0.056	0.489	0.055	0.133	2.709	2.824	6.668	3.459	0.273	0.374	0.136	0.093	15.243	15.764	0.472	0.695	0.281	0.302	0.450	0.257	3.866	7.261	0.718	0.856	0.363	0.669	0.327	0.320	0.033	0.088	0.268	0.097	0.100	0.056	0.032	0.033	4.821	0.225
3542	chr17	72321014	72340872	+	0	NA	intron (NM_153209, intron 2 of 19)	intron (NM_153209, intron 2 of 19)	8592	NM_153209	124602	Hs.372773	NM_153209	ENSG00000196169	KIF19	KIF19A	kinesin family member 19	protein-coding	2.369	1.526	3.311	3.102	5.615	2.876	0.742	0.098	0.170	0.245	0.137	3.147	8.038	0.062	0.110	2.726	5.079	0.170	0.260	9.237	8.378	0.580	0.153	0.068	0.073	nan	0.745	6.437	7.000	5.179	5.730	0.500	0.541	2.169	2.457	1.134	3.442	nan	1.391	2.392	3.995	0.490	0.984	0.742	3.147	1.036	1.779	0.144	0.693
6619	chr6	13709285	13713313	+	0	NA	exon (NM_005493, exon 1 of 14)	exon (NM_005493, exon 1 of 14)	497	NM_005493	10048	Hs.708182	NM_005493	ENSG00000010017	RANBP9	BPM-L|BPM90|RANBPM|RanBP7	RAN binding protein 9	protein-coding	8.829	4.728	7.136	6.808	6.153	3.288	6.485	5.049	0.284	2.629	1.343	9.443	3.496	3.303	0.093	7.708	11.122	7.196	8.945	11.839	10.271	9.150	3.404	14.783	14.906	4.696	5.662	8.752	12.507	7.258	8.854	4.256	10.567	5.795	5.037	8.438	7.488	3.349	1.879	2.623	5.843	1.329	4.688	6.485	9.443	1.139	3.577	3.411	2.452
519	chr1	149800338	149836596	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	3873	NR_036461	337873	Hs.666643	NR_036461	ENSG00000203819	HIST2H2BC	H2B/t|HIST2H2BD	histone cluster 2 H2B family member c (pseudogene)	pseudo	7.169	nan	7.016	4.191	4.428	2.339	3.161	3.202	0.423	3.340	1.769	4.421	20.265	5.613	0.159	9.007	11.404	7.760	12.089	10.897	7.341	12.713	5.225	12.829	12.111	5.141	6.750	6.346	7.809	7.865	12.029	4.499	11.869	5.715	5.094	13.705	11.768	2.408	1.570	3.274	9.913	1.391	3.030	3.161	4.421	1.741	4.920	3.717	3.435
5070	chr21	22416087	22440334	+	0	NA	intron (NM_004540, intron 1 of 17)	MIRb|SINE|MIR	57577	NM_004540	4685	Hs.473450	NM_004540	ENSG00000154654	NCAM2	NCAM21	neural cell adhesion molecule 2	protein-coding	0.768	0.762	0.744	0.069	0.212	0.127	0.160	0.062	0.054	0.058	0.112	0.020	0.345	0.018	0.095	0.425	0.326	0.377	0.403	0.247	0.362	0.454	0.189	0.139	0.135	1.341	1.617	0.247	0.226	0.629	0.269	0.078	0.167	4.544	5.299	0.255	nan	0.349	0.307	0.070	0.042	1.252	0.029	0.160	0.020	0.020	0.092	0.037	0.102
6383	chr5	96745064	96756842	+	0	NA	Intergenic	L2b|LINE|L2	-89447	NR_105028	102546227	Hs.582516	NR_105028	ENSG00000250331	LINC01340	-	long intergenic non-protein coding RNA 1340	ncRNA	nan	1.249	0.958	0.082	0.152	0.095	0.318	0.072	0.116	0.051	0.103	0.010	0.173	0.083	0.145	0.272	0.118	0.248	0.259	0.147	0.148	0.108	0.010	0.198	0.183	0.283	0.363	0.227	0.176	1.175	0.850	0.060	0.112	6.730	9.566	0.760	nan	0.131	0.204	0.023	0.098	2.056	0.061	0.318	0.010	0.008	0.026	0.034	0.539
4092	chr19	44279690	44289721	+	0	NA	intron (NM_002250, intron 1 of 8)	MSR1|Satellite|Satellite	704	NM_002250	3783	Hs.10082	NM_002250	ENSG00000104783	KCNN4	DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4	potassium calcium-activated channel subfamily N member 4	protein-coding	0.954	2.998	0.788	0.653	4.005	1.954	2.561	0.226	0.145	0.651	0.403	7.760	1.396	0.296	0.164	1.760	3.140	1.503	2.660	3.440	4.070	6.294	1.754	0.586	0.633	0.492	0.885	1.213	1.626	0.345	0.222	1.061	1.467	1.115	0.828	0.178	0.441	1.948	1.164	4.054	1.232	0.149	0.088	2.561	7.760	0.269	0.218	0.473	0.086
2451	chr13	111789598	111807616	+	0	NA	intron (NR_046516, intron 1 of 2)	MER5A|DNA|hAT-Charlie	2305	NR_046516	100874226	Hs.577834	NR_046516		ARHGEF7-AS1	-	ARHGEF7 antisense RNA 1	ncRNA	2.154	nan	3.113	2.113	1.062	0.516	1.794	0.460	0.110	0.661	0.312	3.847	1.722	0.431	0.074	2.289	2.174	1.318	1.984	3.842	3.981	2.800	1.311	1.101	1.237	0.190	0.339	3.132	4.013	1.274	1.253	1.383	2.104	1.741	2.009	1.269	1.047	0.515	0.327	0.712	1.432	0.696	2.331	1.794	3.847	0.306	1.267	0.352	0.274
7059	chr6	155580133	155595876	+	0	NA	intron (NM_001001346, intron 1 of 1)	AluY|SINE|Alu	2857	NM_001001346	49861	Hs.567491	NM_001001346	ENSG00000171217	CLDN20	-	claudin 20	protein-coding	nan	1.038	1.257	0.561	0.259	0.142	0.361	0.625	0.082	0.130	0.110	0.122	0.305	0.103	0.116	0.450	0.461	0.426	0.590	0.534	nan	1.185	0.488	0.428	0.529	0.662	0.848	0.445	0.987	0.712	0.506	0.349	0.379	0.205	0.258	2.358	nan	0.579	0.431	0.103	0.136	0.030	0.187	0.361	0.122	0.106	0.116	0.113	2.075
5466	chr3	112851434	112873172	+	0	NA	non-coding (NR_110823, exon 4 of 4)	non-coding (NR_110823, exon 4 of 4)	24275	NR_110823	101929717	Hs.638426	NR_110823	ENSG00000243795	LINC02044	-	long intergenic non-protein coding RNA 2044	ncRNA	2.023	nan	1.616	0.967	0.780	0.424	1.482	1.335	0.157	0.627	0.488	0.992	1.916	0.040	0.084	0.681	0.904	4.586	6.267	0.596	nan	0.409	0.157	0.367	0.360	nan	4.070	1.851	1.787	0.681	0.337	0.142	0.219	1.323	1.552	0.276	0.439	0.755	0.610	0.138	0.099	0.588	0.131	1.482	0.992	0.152	0.140	0.077	0.154
3337	chr17	27132276	27140723	+	0	NA	intron (NM_001288637, intron 1 of 4)	intron (NM_001288637, intron 1 of 4)	2954	NM_001288634	55731	Hs.564533	NM_018182	ENSG00000173065	FAM222B	C17orf63	family with sequence similarity 222 member B	protein-coding	nan	nan	nan	1.446	2.499	1.013	1.515	1.549	0.227	0.778	0.471	1.647	3.572	3.588	0.220	2.683	2.971	6.875	11.188	3.151	2.900	3.040	1.138	4.034	4.075	1.709	2.397	4.604	6.502	4.274	4.210	1.745	2.820	1.881	1.859	2.424	nan	2.282	1.203	1.041	1.153	0.384	1.002	1.515	1.647	0.553	1.108	0.924	1.474
1274	chr11	993784	1014970	+	0	NA	intron (NM_001242837, intron 16 of 21)	AluSz|SINE|Alu	32329	NM_005961	4588	Hs.528432	NM_005961	ENSG00000184956	MUC6	MUC-6	mucin 6, oligomeric mucus/gel-forming	protein-coding	1.179	0.706	1.214	0.484	0.427	0.212	0.386	0.102	0.068	0.695	0.505	0.356	0.480	0.062	0.063	1.544	3.876	0.278	0.404	0.932	0.918	0.972	0.272	0.600	0.573	0.333	0.516	4.339	4.682	0.931	0.876	0.395	0.530	0.298	0.299	0.187	0.297	0.816	0.641	0.466	0.926	0.103	0.060	0.386	0.356	0.083	0.828	0.089	0.030
5119	chr21	38803624	38809722	+	0	NA	intron (NM_001347721, intron 2 of 11)	intron (NM_001347721, intron 2 of 11)	14072	NM_130438	1859	Hs.368240	NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding	1.426	1.051	1.445	0.292	0.624	0.263	0.064	0.207	0.132	0.077	0.169	0.442	0.477	0.018	0.097	1.368	1.095	0.715	1.419	0.541	0.772	0.454	0.269	0.703	0.992	0.455	0.779	1.356	2.689	10.669	5.858	0.195	0.614	0.908	0.938	3.907	4.482	nan	0.383	0.055	0.144	0.079	0.130	0.064	0.442	0.098	0.149	0.601	1.402
110	chr1	17759961	17774529	+	0	NA	promoter-TSS (NM_018715)	promoter-TSS (NM_018715)	-995	NM_018715	55920	Hs.380857	NM_018715	ENSG00000179051	RCC2	TD-60	regulator of chromosome condensation 2	protein-coding	3.798	3.391	nan	3.732	3.551	2.025	3.114	1.167	0.221	1.740	0.860	2.102	9.250	5.808	0.173	3.507	3.550	3.863	4.997	6.088	6.030	2.377	1.010	6.734	nan	2.471	nan	4.336	5.628	nan	3.861	3.381	4.688	2.030	2.015	3.963	3.638	1.788	0.996	2.986	4.223	0.477	2.726	3.114	2.102	1.073	1.038	1.468	1.429
4861	chr20	15525237	15540008	+	0	NA	intron (NM_080676, intron 8 of 16)	intron (NM_080676, intron 8 of 16)	355118	NM_001033087	140733	Hs.661576	NM_080676	ENSG00000172264	MACROD2	C20orf133	MACRO domain containing 2	protein-coding	0.982	nan	0.916	0.188	0.193	0.076	0.137	0.252	0.177	0.053	0.122	0.088	0.338	0.007	0.067	0.650	0.362	0.472	0.560	0.266	0.421	0.229	0.087	0.202	0.221	1.429	1.914	0.342	0.296	6.530	5.816	0.118	0.217	0.100	0.150	1.323	3.994	0.332	0.363	0.023	0.072	0.013	0.027	0.137	0.088	0.322	0.041	0.020	3.576
8215	chr9	97765054	97801409	+	0	NA	intron (NM_032823, intron 11 of 14)	intron (NM_032823, intron 11 of 14)	-44401	NR_106729	102466518		NR_106729	ENSG00000274115	MIR6081	hsa-mir-6081	microRNA 6081	ncRNA	0.963	nan	2.086	2.778	1.020	0.538	0.601	1.450	0.147	0.956	0.614	1.667	3.094	0.251	0.077	1.008	1.160	1.877	nan	3.768	3.259	1.032	0.304	0.415	0.466	0.539	0.739	4.981	5.887	0.838	0.473	1.535	2.730	0.817	0.773	0.442	0.740	1.918	0.984	3.804	0.754	0.181	0.222	0.601	1.667	0.234	1.203	2.402	0.184
8139	chr9	42717030	42730764	+	0	NA	Intergenic	AluSq2|SINE|Alu	5831	NM_199244	349334	Hs.712520	NM_199244	ENSG00000184659	FOXD4L4	FOXD4L2|FOXD4b|bA460E7.2	forkhead box D4-like 4	protein-coding	1.156	1.813	1.191	0.180	0.485	0.199	0.356	0.094	0.128	0.206	0.357	0.426	0.508	0.107	0.193	0.609	0.461	0.346	0.302	1.288	1.262	1.043	0.396	0.544	0.394	0.327	0.577	0.312	0.344	0.611	0.204	0.449	0.811	5.297	4.671	0.258	0.369	0.762	0.641	0.045	0.085	2.485	0.059	0.356	0.426	0.035	0.111	0.444	0.054
2210	chr12	129546212	129565693	+	0	NA	TTS (NM_133448)	TTS (NM_133448)	-38283	NR_104173	283352	Hs.665667	NR_104172	ENSG00000249196	LOC283352	-	uncharacterized LOC283352	ncRNA	0.486	0.986	0.484	0.054	0.411	0.185	1.009	0.038	0.074	0.273	0.186	1.791	2.492	0.033	0.090	0.363	0.289	0.099	0.118	4.242	4.391	nan	0.269	0.522	0.565	0.127	0.184	3.860	3.185	0.979	1.323	0.175	0.242	0.152	0.113	0.184	0.303	1.624	0.948	5.048	5.093	0.044	0.056	1.009	1.791	0.124	0.057	0.096	0.089
2658	chr14	67824056	67829573	+	0	NA	promoter-TSS (NM_015994)	promoter-TSS (NM_015994)	-94	NM_015994	51382	Hs.272630	NM_015994	ENSG00000100554	ATP6V1D	ATP6M|VATD|VMA8	ATPase H+ transporting V1 subunit D	protein-coding	nan	nan	3.217	6.541	3.042	1.811	4.960	4.008	0.206	2.047	0.955	2.840	7.546	2.777	0.160	4.334	3.854	6.924	9.731	6.301	7.052	5.372	2.915	nan	15.524	3.420	4.840	6.665	12.721	10.387	10.371	4.641	6.652	6.440	9.143	4.850	3.649	5.124	3.018	3.247	2.959	0.811	1.786	4.960	2.840	0.809	1.655	1.179	0.829
8112	chr9	34046566	34050867	+	0	NA	intron (NM_018449, intron 1 of 28)	CpG	231	NM_001282529	55833	Hs.493739	NM_018449	ENSG00000137073	UBAP2	UBAP-2	ubiquitin associated protein 2	protein-coding	5.478	9.196	4.543	7.836	6.257	2.940	4.205	3.700	0.359	3.695	1.827	4.891	13.428	4.128	0.149	7.058	5.927	8.224	11.323	11.679	8.890	12.817	10.112	12.172	13.745	8.009	9.386	8.225	12.201	8.336	9.136	7.260	8.085	10.008	12.283	8.220	6.488	8.384	4.585	5.651	4.202	1.264	3.116	4.205	4.891	0.563	2.168	3.175	2.904
6309	chr5	70566515	70628196	+	0	NA	Intergenic	L1ME1|LINE|L1	-42233	NR_033968	100049076	Hs.665231	NR_033968		GUSBP9	-	glucuronidase, beta pseudogene 9	pseudo	0.718	nan	0.634	0.576	0.554	0.294	0.677	0.200	0.091	1.423	1.019	0.440	1.512	0.231	0.135	0.630	0.567	0.642	1.031	0.952	0.978	nan	1.938	0.685	0.656	1.680	nan	1.071	1.384	0.801	0.593	0.171	0.335	2.692	4.138	0.270	0.392	2.379	1.375	0.188	0.659	2.126	0.446	0.677	0.440	0.297	0.349	0.209	0.113
6644	chr6	19749607	19756644	+	0	NA	intron (NR_134651, intron 2 of 3)	L2c|LINE|L2	51865	NR_134649	100506885	Hs.346489	NR_134649	ENSG00000228412	LOC100506885	-	uncharacterized LOC100506885	ncRNA	2.316	nan	6.800	1.243	2.058	1.198	0.586	0.962	0.046	2.354	0.882	6.045	1.739	0.199	0.075	0.566	0.738	0.330	0.678	2.251	2.752	5.210	1.273	0.365	0.308	1.982	2.307	0.486	0.482	4.026	3.449	0.382	0.755	5.336	6.850	2.671	7.277	0.994	0.700	0.071	0.580	0.893	1.688	0.586	6.045	2.259	0.144	0.225	3.627
646	chr1	167142414	167177657	+	0	NA	intron (NR_110811, intron 2 of 3)	intron (NR_110811, intron 2 of 3)	5007	NR_110811	101928484	Hs.568496	NR_110811		LINC01363	RBSG4	long intergenic non-protein coding RNA 1363	ncRNA	1.404	nan	2.913	0.156	0.265	0.168	0.671	0.122	0.141	0.166	0.163	0.068	0.359	0.055	0.112	0.530	0.361	0.453	0.454	0.453	nan	0.921	0.251	0.119	0.134	0.598	1.047	0.320	nan	1.621	1.542	0.316	0.475	0.736	1.103	1.730	5.417	0.631	0.535	0.030	0.226	0.142	0.051	0.671	0.068	0.187	0.046	0.098	3.774
5322	chr3	8334445	8346409	+	0	NA	intron (NR_033378, intron 3 of 3)	intron (NR_033378, intron 3 of 3)	202917	NR_033378	100288428	Hs.651576	NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1 (head to head)	ncRNA	0.740	0.862	0.813	0.208	0.142	0.055	0.097	0.137	0.041	0.078	0.073		0.246	0.054	0.070	0.199	0.166	0.251	0.409	0.260	0.362	0.142	0.084	0.221	0.181	0.081	0.166	0.612	0.568	0.860	0.358	0.147	0.160	0.070	0.070	0.699	2.963	0.302	0.356	0.061	0.059	0.016	0.073	0.097			0.314	0.025	3.684
4005	chr19	28891690	28898569	+	0	NA	Intergenic	Charlie15a|DNA|hAT-Charlie	-202466	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA	nan	1.532	0.571	0.088	0.714	0.396	0.131	0.108	0.070	0.023	0.119	0.052	11.980	0.078	0.128	0.298	0.133	0.147	0.242	0.204	0.212	0.155	0.061	0.062	0.077	0.149	0.230	0.113	0.158	0.358	0.106	0.204	0.410	0.074	0.101	0.330	0.393	1.985	1.379	0.231	0.091		0.023	0.131	0.052	0.215	0.131	0.100	0.472
8342	chr9	139795311	139802002	+	0	NA	intron (NM_021138, intron 4 of 10)	FRAM|SINE|Alu	17471	NR_039697	100616480		NR_039697	ENSG00000266507	MIR4479	-	microRNA 4479	ncRNA	nan	0.755	1.564	0.310	0.404	0.171	0.325	2.068	0.293	0.142	0.110	0.215	1.776	0.274	0.092	0.272	0.318	1.330	3.107	1.076	1.160	nan	0.141	0.222	0.198	0.202	0.354	0.503	0.640	0.483	0.438	0.214	0.233	0.208	0.242	0.193	0.433	0.384	0.297	0.090	0.178		0.188	0.325	0.215	0.420	6.718	0.015	0.092
6407	chr5	112498234	112557252	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	102869	NM_002387	4163	Hs.593171	NM_002387	ENSG00000171444	MCC	MCC1	mutated in colorectal cancers	protein-coding	1.466	0.850	1.250	0.049	0.195	0.101	0.286	0.143	0.060	0.069	0.076	0.024	0.206	0.060	0.120	0.263	0.238	0.718	1.909	0.190	0.222	0.169	0.094	0.159	0.154	1.036	nan	0.098	0.125	1.625	1.729	0.138	0.190	1.026	1.094	1.405	4.329	0.488	0.446	0.029	0.065	0.278	0.934	0.286	0.024	0.288	0.066	0.039	1.433
4626	chr2	179755663	179778143	+	0	NA	intron (NM_173648, intron 8 of 23)	L1PA3|LINE|L1	-94753	NM_001267550	7273	Hs.134602	NM_003319	ENSG00000155657	TTN	CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|MYLK5|TMD	titin	protein-coding	1.347	1.085	1.382	0.094	0.265	0.123	0.108	0.077	0.094	0.083	0.105	0.123	0.348	0.010	0.123	0.376	0.229	0.230	0.300	0.307	0.482	0.272	0.131	0.304	0.361	1.656	1.888	0.579	0.632	2.326	1.674	0.123	0.180	0.069	0.072	3.285	8.835	0.383	0.393	0.467	0.044	0.013	0.308	0.108	0.123	0.030	0.032	0.044	3.120
7993	chr8	144588619	144613016	+	0	NA	intron (NM_015117, intron 3 of 11)	intron (NM_015117, intron 3 of 11)	22803	NM_015117	23144	Hs.521915	NM_015117	ENSG00000014164	ZC3H3	ZC3HDC3	zinc finger CCCH-type containing 3	protein-coding	1.428	0.506	nan	1.410	1.044	0.638	0.592	0.167	0.059	0.828	0.363	1.815	1.688	0.120	0.075	0.651	0.975	0.280	0.419	nan	3.562	nan	0.303	0.728	0.788	0.423	0.637	1.641	1.699	0.917	1.223	0.602	0.786	0.492	0.534	0.251	0.396	1.716	1.041	4.364	0.485	0.070	0.076	0.592	1.815	0.321	0.971	0.158	0.071
6151	chr5	4568257	4579188	+	0	NA	Intergenic	Intergenic	-199872	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA	0.469	0.941	0.787	0.160	0.468	0.191	0.163	0.144	0.117	0.156	0.190	0.099	0.555	0.029	0.123	0.337	0.221	6.850	12.047	0.483	0.545	0.410	0.134	0.069	0.086	0.152	0.297	nan	0.344	nan	0.305	0.116	0.236	0.066	0.046	0.085	0.167	0.200	nan	0.015	0.234		0.051	0.163	0.099	0.017	0.055	0.100	
5885	chr4	48179839	48201282	+	0	NA	intron (NM_003215, intron 2 of 17)	intron (NM_003215, intron 2 of 17)	-54287	NM_003328	7294	Hs.479669	NM_003328	ENSG00000074966	TXK	BTKL|PSCTK5|PTK4|RLK|TKL	TXK tyrosine kinase	protein-coding	0.631	nan	nan	2.199	3.823	2.045	0.083	0.214	0.099	1.904	0.774	0.665	0.271	0.045	0.084	0.366	0.243	0.169	0.281	0.519	0.469	3.587	0.942	0.259	0.284	0.284	0.391	2.637	2.830	0.914	0.660	0.162	0.209	1.068	0.931	0.363	0.986	2.766	1.530	0.021	0.091	0.234	0.015	0.083	0.665	0.009	0.588	0.028	0.231
4351	chr2	53547461	53640896	+	0	NA	Intergenic	Intergenic	-400742	NM_001346127	494143	Hs.585944	NM_001008708	ENSG00000143942	CHAC2	-	ChaC cation transport regulator homolog 2	protein-coding	5.985	nan	5.654	0.093	0.129	0.113	0.185	0.228	0.100	0.106	0.139	0.091	0.259	0.047	0.133	0.309	0.158	0.167	0.255	0.295	0.349	0.133	0.077	0.331	0.338	0.603	0.743	0.369	0.328	0.830	0.601	0.109	0.203	14.649	13.502	0.296	0.556	0.297	0.287	0.223	0.097	3.197	0.066	0.185	0.091	0.078	0.166	0.055	0.088
4166	chr2	690174	695687	+	0	NA	Intergenic	Intergenic	-15491	NM_152834	129787	Hs.43899	NM_152834	ENSG00000151353	TMEM18	-	transmembrane protein 18	protein-coding	0.578	0.439	0.628	0.063	0.402	0.123	0.165	0.106	0.116	0.196	0.216	0.131	0.789	0.058	0.129	0.373	0.180	0.264	0.478	0.778	0.824	0.154	0.087	0.229	0.248	0.201	0.362	0.478	0.551	0.351	0.156	0.202	0.273	0.054	0.055	0.116	0.219	0.611	0.512	0.122	0.258		0.043	0.165	0.131	0.069	4.953	0.036	
33	chr1	3131713	3140351	+	0	NA	intron (NM_199454, intron 2 of 16)	intron (NM_199454, intron 2 of 16)	91493	NR_036215	100422968		NR_036215	ENSG00000283572	MIR4251	-	microRNA 4251	ncRNA	0.664	nan	0.672	0.041	0.610	0.223	0.090	0.088	0.055		0.030	0.014	0.411	0.025	0.073	0.205	0.147	0.098	0.096	0.298	0.346	0.041	0.078	0.115	0.083	0.207	nan	nan	0.076	nan	0.097	0.071	0.122	0.102	0.041	0.079	0.090	0.098	0.262	8.330	0.052	0.055	0.018	0.090	0.014	0.171	0.035	0.023	
5654	chr3	170803147	170810889	+	0	NA	intron (NM_001161560, intron 22 of 31)	intron (NM_001161560, intron 22 of 31)	17530	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA	1.152	3.068	0.800	1.671	1.315	0.641	0.501	0.535	0.229	0.164	0.237	0.392	0.440	0.028	0.093	0.437	0.269	0.832	0.757	1.512	1.630	0.279	0.184	0.259	0.215	1.192	1.828	5.782	12.453	0.960	0.449	0.161	0.213	0.101	0.101	0.496	0.908	1.435	1.279	1.179	3.389	0.012	0.587	0.501	0.392	0.037	0.039	0.051	0.368
6990	chr6	136644652	136650174	+	0	NA	Intergenic	Intergenic	-36424	NM_001077441	9774	Hs.486542	NM_014739	ENSG00000029363	BCLAF1	BTF|bK211L9.1	BCL2 associated transcription factor 1	protein-coding	1.918	1.308	1.365	1.257	0.798	0.292	0.704	0.028		0.679	0.214	1.061	1.642	0.019	0.071	0.623	1.260	0.377	0.588	1.013	0.974	nan	1.682	0.436	0.389	0.789	0.999	1.653	2.244	1.054	0.752	0.515	0.921	0.692	1.154	2.515	nan	1.291	0.851	0.322	0.225	0.154	0.185	0.704	1.061	0.298	5.198	0.342	0.987
6235	chr5	36435283	36463691	+	0	NA	Intergenic	Intergenic	-147476	NM_145000	202151	Hs.199777	NM_145000	ENSG00000164188	RANBP3L	-	RAN binding protein 3 like	protein-coding	0.689	1.104	nan	0.136	0.184	0.078	0.451	1.240	0.317	0.091	0.159	0.042	0.495	0.031	0.096	0.399	0.289	0.893	4.742	0.292	0.351	0.121	0.081	0.230	0.257	0.260	0.481	0.197	0.219	0.523	0.198	0.217	0.411	0.054	0.066	0.264	0.528	0.253	0.360	0.097	0.065	0.017	0.048	0.451	0.042	0.007	0.039	0.125	0.096
5619	chr3	156798648	156808659	+	0	NA	intron (NR_034007, intron 3 of 3)	MLT1F2|LTR|ERVL-MaLR	-4017	NR_034008	100498859	Hs.633655	NR_034008	ENSG00000241135	LINC00881	-	long intergenic non-protein coding RNA 881	ncRNA	nan	3.122	1.850	2.505	4.454	2.226	2.841	2.440	0.273	1.819	0.812	2.126	3.021	0.886	0.080	2.074	3.266	2.943	4.411	5.021	4.629	6.776	3.564	1.959	2.058	2.823	nan	4.493	5.734	4.575	4.922	1.474	2.661	1.584	1.224	2.721	3.826	2.184	1.304	2.849	3.322	0.457	0.815	2.841	2.126	0.659	1.378	2.461	2.109
4577	chr2	165743836	165774836	+	0	NA	intron (NM_001199148, intron 10 of 10)	intron (NM_001199148, intron 10 of 10)	52699	NM_001199148	151258	Hs.658702	NM_173512	ENSG00000169507	SLC38A11	AVT2	solute carrier family 38 member 11	protein-coding	1.578	1.374	nan	0.165	0.546	0.216	0.413	0.144	0.067	0.188	0.214	0.301	0.852	0.035	0.074	0.346	0.300	0.322	0.692	0.268	0.344	1.081	0.297	0.384	0.372	4.160	4.548	0.841	0.527	1.473	1.377	0.167	0.202	0.004	0.002	1.735	5.341	0.553	0.425	0.034	0.054	0.006	0.261	0.413	0.301	0.325	0.049	0.057	1.537
2013	chr12	68785664	68800530	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	52167	NR_120458	100507195	Hs.450772	NR_120458	ENSG00000251301	LOC100507195	-	uncharacterized LOC100507195	ncRNA	0.802	1.144	0.617	0.191	0.877	0.508	1.225	0.330	0.115	0.134	0.202	0.226	1.263	0.036	0.133	0.564	0.491	0.812	0.826	1.058	nan	1.621	0.422	0.449	0.435	1.624	2.234	0.852	0.861	0.389	0.206	0.267	0.313	0.420	0.466	0.234	0.324	2.591	1.212	0.162	0.275	0.090	2.134	1.225	0.226	0.164	0.140	0.020	0.091
7675	chr8	53153225	53169856	+	0	NA	intron (NM_014682, intron 2 of 25)	intron (NM_014682, intron 2 of 25)	54618	NR_134310	101929341	Hs.147170	NR_134310	ENSG00000253551	LOC101929341	-	uncharacterized LOC101929341	ncRNA	4.082	nan	1.991	5.022	6.322	3.615	1.586	0.095	0.087	3.853	1.880	5.430	8.696	0.026	0.108	0.524	0.988	0.478	0.677	11.490	11.369	6.185	3.962	0.482	0.483	5.642	nan	3.094	4.741	8.235	8.999	1.053	2.000	6.980	6.193	3.409	5.484	5.121	2.808	0.020	4.737	1.598	0.544	1.586	5.430	1.261	2.814	1.284	1.015
264	chr1	43242742	43287178	+	0	NA	Intergenic	Intergenic	11299	NM_001242750	100129924	Hs.720780	NM_001242750	ENSG00000274386	TMEM269	-	transmembrane protein 269	protein-coding	nan	1.062	nan	0.439	0.513	0.257	0.318	0.437	0.087	0.341	0.246	0.679	1.173	0.326	0.102	0.631	0.624	0.537	0.726	1.456	1.523	0.636	0.284	1.093	1.079	0.720	nan	nan	1.144	1.621	1.315	0.726	nan	0.219	0.262	1.186	4.037	0.723	0.523	0.372	0.289	0.043	0.205	0.318	0.679	0.114	0.146	0.277	1.816
806	chr1	204375217	204393249	+	0	NA	Intergenic	AluJb|SINE|Alu	-3288	NM_032833	84919	Hs.304376	NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding	2.734	2.258	3.115	1.405	2.739	1.427	2.343	2.642	0.536	1.537	0.774	1.692	2.984	1.344	0.137	3.012	2.909	3.682	5.851	3.632	3.661	2.777	1.695	nan	nan	2.403	3.139	2.512	3.603	2.543	2.112	1.277	2.172	1.904	2.289	2.656	4.965	1.548	0.987	1.188	3.392	0.317	0.985	2.343	1.692	0.451	0.835	0.755	1.247
4960	chr20	44484743	44509720	+	0	NA	intron (NM_080752, intron 1 of 1)	AluSx|SINE|Alu	11011	NM_080752	140831	Hs.292135	NM_080752	ENSG00000132801	ZSWIM3	C20orf164|PPP1R174	zinc finger SWIM-type containing 3	protein-coding	nan	nan	1.082	0.658	0.695	0.324	0.468	0.423	0.215	0.316	0.242	0.636	1.246	0.293	0.109	1.165	1.359	0.570	0.885	0.780	0.873	nan	0.662	0.865	0.913	0.831	1.015	1.316	1.296	nan	0.849	0.627	0.878	0.342	0.280	1.363	4.730	0.544	0.324	0.156	0.452	0.096	0.222	0.468	0.636	0.174	0.523	0.266	1.314
1885	chr12	28065425	28069841	+	0	NA	Intergenic	L1MA5|LINE|L1	55261	NM_198966	5744	Hs.591159	NM_002820	ENSG00000087494	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone like hormone	protein-coding	nan	nan	nan	0.178	0.049	0.036	0.096	0.086		0.212	0.019	0.029	0.131	0.074	0.194	0.219	0.130	0.146	0.260	0.379	0.356	0.171	0.056	0.367	0.335	1.048	1.486	0.127	0.133	1.215	1.626	0.159	0.392	0.252	0.283	0.664	1.129	0.325	0.374		0.040	0.066	0.159	0.096	0.029	5.368	0.023	0.068	0.333
4899	chr20	25010775	25026625	+	0	NA	intron (NM_032501, intron 2 of 13)	intron (NM_032501, intron 2 of 13)	-5358	NM_001252676	84532	Hs.529353	NM_032501	ENSG00000154930	ACSS1	ACAS2L|ACECS1|AceCS2L	acyl-CoA synthetase short-chain family member 1	protein-coding	1.124	2.196	nan	0.138	0.191	0.108	0.219	0.415	0.141	0.099	0.067	0.168	1.080	0.069	0.098	3.871	6.659	3.026	4.838	0.449	0.497	0.758	0.228	0.308	0.346	0.253	0.475	1.779	1.708	1.295	1.179	1.579	1.817	0.195	0.209	0.274	0.377	0.488	0.491	0.562	0.067	0.042	0.040	0.219	0.168	0.195	0.090	0.676	0.141
2905	chr15	63722432	63744157	+	0	NA	Intergenic	MIR|SINE|MIR	50865	NR_120375	102723344	Hs.569500	NR_120375		LOC102723344	-	uncharacterized LOC102723344	ncRNA	1.177	1.296	nan	0.771	0.652	0.346	0.754	0.216	0.097	1.796	0.947	1.823	1.589	0.035	0.065	0.712	0.870	2.453	2.560	1.345	1.260	nan	1.006	0.229	0.241	1.102	1.402	1.732	1.390	0.836	0.573	0.299	0.329	3.287	3.324	0.369	0.855	1.992	0.984	0.114	0.576	1.403	0.205	0.754	1.823	0.201	0.587	0.054	0.142
5612	chr3	154825978	154835934	+	0	NA	intron (NM_007287, intron 3 of 22)	L2c|LINE|L2	32877	NM_007289	4311	Hs.307734	NM_000902	ENSG00000196549	MME	CALLA|CD10|CMT2T|NEP|SCA43|SFE	membrane metalloendopeptidase	protein-coding	nan	0.877	0.609	0.226	0.310	0.097	0.143	0.348	0.180	0.095	0.205	0.084	0.175	0.054	0.088	0.875	0.901	10.353	6.135	0.227	0.336	0.186	0.133	0.304	0.245	0.219	nan	0.187	0.203	0.492	0.180	0.319	0.734	0.039	0.056	0.164	0.242	0.205	0.228	0.016	0.045	0.010	0.032	0.143	0.084		0.031	0.208	0.037
7659	chr8	42052105	42073335	+	0	NA	intron (NM_001319189, intron 1 of 11)	MER4A|LTR|ERV1	2522	NM_001319189	5327	Hs.491582	NM_000930	ENSG00000104368	PLAT	T-PA|TPA	plasminogen activator, tissue type	protein-coding	0.834	nan	0.692	0.148	0.274	0.125	0.837	0.304	0.131	0.141	0.136	0.259	0.436	0.066	0.114	0.429	0.408	0.373	1.010	0.570	0.649	4.360	1.442	0.323	0.359	0.241	0.553	0.421	0.438	0.900	0.633	0.213	0.281	0.359	0.411	0.465	0.700	1.386	0.920	0.046	0.797	0.040	0.052	0.837	0.259	0.073	0.845	0.033	0.256
6519	chr5	154345450	154350840	+	0	NA	3' UTR (NM_001014990, exon 6 of 6)	3' UTR (NM_001014990, exon 6 of 6)	27512	NM_014180	29093	Hs.483924	NM_014180	ENSG00000082515	MRPL22	HSPC158|L22mt|MRP-L22|MRP-L25|RPML25	mitochondrial ribosomal protein L22	protein-coding	0.652	nan	0.742	0.124	0.178	0.118	0.187	0.085	0.203	0.057	0.075	0.142	0.354	0.060	0.132	1.633	1.095	10.186	2.194	0.220	0.326	0.192	0.078	0.178	0.156	0.299	0.559	0.188	0.246	0.434	0.254	0.460	0.555	0.141	0.270	0.229	0.804	0.388	0.320		0.107	0.018	0.030	0.187	0.142	0.054	0.017	0.091	0.137
556	chr1	154190030	154197368	+	0	NA	promoter-TSS (NM_138740)	promoter-TSS (NM_138740)	374	NM_001287816	9898	Hs.490551	NM_014847	ENSG00000143569	UBAP2L	NICE-4|NICE4	ubiquitin associated protein 2 like	protein-coding	nan	nan	4.637	3.480	4.253	2.799	5.485	3.525	0.134	3.270	1.420	3.832	12.583	3.881	0.155	6.664	5.012	6.911	9.414	8.486	nan	5.276	3.223	12.191	13.480	5.213	6.615	5.896	9.778	6.670	5.703	10.269	14.093	4.596	5.522	6.428	7.165	2.832	1.693	2.596	4.730	1.012	2.407	5.485	3.832	1.265	4.287	3.891	1.997
717	chr1	183984672	184009704	+	0	NA	intron (NM_001303421, intron 1 of 11)	intron (NM_001303421, intron 1 of 11)	9716	NM_001303420	23127	Hs.387995	NM_015101	ENSG00000198756	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding	nan	nan	1.795	0.190	0.254	0.128	0.819	0.782	0.232	0.172	0.228	0.082	0.617	1.322	0.136	1.270	1.434	0.614	1.016	0.680	nan	0.282	0.115	nan	0.495	6.440	7.929	0.418	0.378	1.281	1.181	0.736	1.259	2.164	1.509	0.668	nan	0.599	0.598	0.060	0.153	0.533	0.204	0.819	0.082	0.121	0.033	0.432	0.188
7882	chr8	113267857	113284575	+	0	NA	intron (NM_052900, intron 58 of 68)	intron (NM_052900, intron 58 of 68)	-379506	NR_031745	100302225		NR_031745	ENSG00000238399	MIR2053	hsa-mir-2053	microRNA 2053	ncRNA	nan	nan	1.142	0.564	0.434	0.272	0.084	0.118	0.173	0.868	0.498	0.858	0.990	0.039	0.078	0.298	0.205	0.057	0.072	0.354	0.356	9.691	8.127	0.601	nan	2.087	nan	0.506	0.985	0.930	0.593	0.139	0.206	1.723	1.708	0.410	1.104	1.499	0.828	0.020	0.075	0.393	0.157	0.084	0.858		0.480	0.030	0.998
2817	chr15	22100088	22110575	+	0	NA	Intergenic	L1MA8|LINE|L1	-22190	NR_110752	102724631	Hs.722659	NM_207355	ENSG00000278522	POTEB3	POTE-15|POTEB	POTE ankyrin domain family member B3	protein-coding	nan	0.903	nan	0.084	0.381	0.229	0.123	0.071	0.147	0.042	0.088	0.046	0.469	0.010	0.102	0.910	0.515	5.979	1.953	0.124	0.181	0.222	0.136	0.526	0.514	0.259	0.354	0.220	0.220	nan	0.268	0.274	0.574	0.081	0.107	0.118	0.210	0.418	0.424	0.021	0.034	0.055	0.015	0.123	0.046	0.047	0.039	0.123	0.012
6111	chr4	188084977	188090200	+	0	NA	Intergenic	L1MB3|LINE|L1	339179	NR_038931	339975	Hs.639361	NR_038931		LOC339975	-	uncharacterized LOC339975	ncRNA	nan	0.513	nan	0.119	0.128	0.062	0.073	0.043	0.032	0.090	0.109	0.114	0.273	0.041	0.047	2.104	1.341	10.966	2.698	0.146	0.321	0.120	0.055	0.744	0.959	0.151	0.117	0.295	0.260	0.254	0.103	0.485	0.787	0.136	0.193	0.060	0.134	0.126	0.130	0.032	0.055	0.074	0.015	0.073	0.114		0.118	0.343	0.048
7838	chr8	102146027	102172480	+	0	NA	Intergenic	Intergenic	58707	NM_001042510	51123	Hs.374485	NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding	2.295	nan	nan	0.624	1.531	0.757	1.538	2.808	0.209	0.260	0.204	1.007	4.897	0.054	0.068	0.512	0.662	0.561	1.203	2.479	1.982	nan	0.668	0.917	1.068	1.584	nan	5.132	nan	nan	0.689	0.472	0.637	3.177	3.631	0.458	nan	1.726	1.027	2.239	1.589	0.565	0.330	1.538	1.007	0.628	0.641	0.340	0.243
7250	chr7	34096392	34107434	+	0	NA	intron (NM_133468, intron 12 of 15)	X6A_LINE|LINE|CR1	157390	NM_133468	168667	Hs.660998	NM_133468	ENSG00000164619	BMPER	CRIM3|CV-2|CV2	BMP binding endothelial regulator	protein-coding	1.860	1.445	1.647	0.127	0.274	0.087	0.837	2.021	0.045	0.229	0.139	0.243	1.035	0.078	0.141	0.569	0.676	0.341	0.360	0.646	nan	0.140	0.088	0.444	0.432	3.095	4.683	nan	nan	0.518	0.238	0.115	0.361	0.087	0.126	0.800	nan	0.944	0.680	0.040	0.067	0.035	0.086	0.837	0.243	0.194	0.100	0.082	0.325
5436	chr3	97719896	97733226	+	0	NA	intron (NR_047685, intron 7 of 9)	intron (NR_047685, intron 7 of 9)	27587	NM_001105580	200959	Hs.534578	NM_001105580	ENSG00000183185	GABRR3	-	gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene)	protein-coding	1.122	1.016	0.882	0.085	0.502	0.252	0.115	0.191	0.060	0.128	0.184	0.062	0.244	0.024	0.096	0.261	0.149	0.192	0.380	0.351	0.333	0.210	0.073	0.242	0.263	3.506	4.146	0.243	0.207	1.043	0.703	0.105	0.180	0.076	0.132	0.450	0.977	0.461	0.464	0.091	0.066	0.036	0.060	0.115	0.062	0.015	0.122	0.044	0.395
8299	chr9	132240760	132266257	+	0	NA	intron (NR_038955, intron 1 of 4)	intron (NR_038955, intron 1 of 4)	2569	NR_038955	100506190	Hs.529860	NR_038955		LINC00963	-	long intergenic non-protein coding RNA 963	ncRNA	nan	3.074	3.461	1.456	2.235	1.081	5.874	3.250	0.485	1.448	0.675	5.147	3.927	3.998	0.143	1.341	2.439	2.980	6.483	3.881	3.643	nan	0.083	1.224	1.221	2.122	2.788	4.165	6.401	2.963	2.751	1.440	1.581	2.436	2.500	1.394	3.029	0.886	0.580	2.912	1.443	0.735	0.561	5.874	5.147	2.990	4.147	0.990	0.610
2249	chr13	27292159	27305744	+	0	NA	Intergenic	SVA_D|Other|Other	35971	NM_005288	2835	Hs.123034	NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding	0.822	0.832	0.821	1.102	0.236	0.095	0.084	0.109	0.036	0.149	0.090	0.168	0.258	0.032	0.087	0.563	0.627	0.183	nan	0.851	0.855	6.637	2.640	0.048	0.051	0.849	1.176	0.537	0.547	0.915	0.557	0.250	0.287	0.071	0.075	0.391	0.721	0.853	0.612	0.024	0.117	0.063	0.451	0.084	0.168	0.071	0.057	0.044	0.110
3353	chr17	30500376	30527723	+	0	NA	intron (NR_110083, intron 8 of 20)	AluSz6|SINE|Alu	-35459	NR_002222	503640	Hs.631752	NR_002222		ARGFXP2	-	arginine-fifty homeobox pseudogene 2	pseudo	nan	1.201	1.012	0.144	0.381	0.153	0.079	0.202	0.156	0.091	0.081	0.065	0.358	0.166	0.249	0.355	0.354	0.222	0.315	nan	0.445	0.434	0.196	0.386	0.364	0.358	0.605	0.444	0.500	nan	0.993	0.169	0.221	0.159	0.214	1.825	6.048	0.500	0.310	0.106	0.139	0.038	0.181	0.079	0.065	0.043	0.041	0.058	2.526
5678	chr3	173915532	173928379	+	0	NA	intron (NM_014932, intron 4 of 6)	intron (NM_014932, intron 4 of 6)	-283369	NR_046664	100874010	Hs.624265	NR_046664	ENSG00000228213	NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA	0.963	1.406	0.722	0.198	1.085	0.537	0.474	0.168	0.100	1.411	1.032	0.065	0.440	0.025	0.081	0.284	0.284	1.142	1.602	0.406	0.405	9.941	3.107	0.251	0.297	3.592	4.173	0.365	0.356	0.560	0.291	0.143	0.191	3.233	3.880	0.773	1.332	0.855	0.618	0.100	0.041	0.523	0.072	0.474	0.065	0.015	0.048	0.031	0.154
1605	chr11	102624155	102665370	+	0	NA	intron (NM_002425, intron 7 of 9)	MIRc|SINE|MIR	6597	NM_002425	4319	Hs.2258	NM_002425	ENSG00000166670	MMP10	SL-2|STMY2	matrix metallopeptidase 10	protein-coding	0.499	0.863	0.600	0.134	0.367	0.204	0.370	0.052	0.039	0.349	0.263	0.044	0.469	4.079	0.211	0.322	0.224	0.201	0.348	0.394	0.401	0.143	0.073	0.569	0.613	0.184	0.298	0.419	0.546	0.364	0.139	0.224	0.281	0.667	0.871	0.248	0.527	0.590	0.570	0.036	0.098	0.177	0.081	0.370	0.044	0.007	0.062	0.048	0.120
6892	chr6	107632502	107642214	+	0	NA	intron (NM_020381, intron 2 of 7)	intron (NM_020381, intron 2 of 7)	143421	NM_020381	57107	Hs.745008	NM_020381	ENSG00000164494	PDSS2	C6orf210|COQ10D3|DLP1|bA59I9.3|hDLP1	decaprenyl diphosphate synthase subunit 2	protein-coding	1.112	nan	nan	0.749	1.867	1.286	0.281	0.237	0.116	0.177	0.125	0.284	0.459	0.112	0.121	7.379	8.081	1.937	1.277	0.486	nan	1.789	0.565	0.373	0.466	1.250	1.425	0.415	0.372	nan	0.258	2.883	3.541	1.130	1.455	0.375	0.883	1.322	0.815	0.126	0.164	0.375	0.121	0.281	0.284	0.021	0.303	3.606	0.261
2431	chr13	108025310	108031604	+	0	NA	intron (NM_001080396, intron 1 of 2)	MLT1F|LTR|ERVL-MaLR	155139	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA	0.766	1.553	0.835	0.856	6.372	3.216	2.187	0.024	0.154	2.036	1.049	2.176	0.794	0.018	0.081	1.676	1.122	1.223	0.680	0.871	0.986	0.217	0.058	0.114	0.061	0.767	nan	2.066	2.167	0.610	0.215	0.176	0.190	9.602	8.031	0.167	nan	0.894	0.429	0.088	1.740	0.804	0.881	2.187	2.176	0.015	0.372	0.038	0.060
6373	chr5	93852493	93861811	+	0	NA	intron (NM_001145678, intron 4 of 20)	intron (NM_001145678, intron 4 of 20)	97157	NM_173665	285600	Hs.425123	NM_173665	ENSG00000185261	KIAA0825	C5orf36	KIAA0825	protein-coding	nan	7.490	0.705	0.208	0.210	0.171	0.120	0.155	0.057	0.034	0.018		0.201	0.140	0.108	0.223	0.144	0.186	0.325	0.198	0.206	0.923	0.267	0.143	0.135	0.482	0.714	0.856	0.505	0.750	0.269	0.127	0.142	0.277	0.352	0.366	nan	0.567	0.360	0.071	0.087	0.061		0.120			1.982	0.060	0.266
6299	chr5	69112922	69152403	+	0	NA	Intergenic	AluSz6|SINE|Alu	-126308	NR_027386	653188	Hs.631974	NR_027386	ENSG00000253203	GUSBP3	-	glucuronidase, beta pseudogene 3	pseudo	1.018	2.451	0.875	0.955	0.673	0.434	0.817	0.189	0.049	2.032	1.426	0.515	2.105	0.315	0.133	1.018	0.974	0.998	1.539	1.560	1.483	4.539	2.529	1.188	0.973	2.421	2.583	1.628	2.323	1.134	0.941	0.214	0.551	4.395	6.223	0.425	0.525	3.790	2.071	0.330	0.821	3.119	0.620	0.817	0.515	0.497	0.429	0.368	0.120
1945	chr12	52509911	52526296	+	0	NA	Intergenic	AluY|SINE|Alu	30750	NR_120440	26628	Hs.524431	NR_120437	ENSG00000257542	OR7E47P	OR7E141	olfactory receptor family 7 subfamily E member 47 pseudogene	pseudo	nan	2.415	1.341	0.959	0.863	0.481	1.093	0.092	0.157	0.990	0.637	2.073	1.774	0.007	0.079	nan	1.293	0.374	0.686	1.794	nan	5.208	1.203	0.371	0.381	0.495	nan	4.062	nan	0.690	0.729	0.417	0.462	2.396	1.995	0.181	0.260	3.421	1.905	2.503	1.621	0.948	0.595	1.093	2.073	1.044	0.471	0.158	0.091
969	chr1	245127049	245136667	+	0	NA	non-coding (NR_111907, exon 2 of 2)	non-coding (NR_111907, exon 2 of 2)	-1313	NM_032328	84288	Hs.134857	NM_032328	ENSG00000203666	EFCAB2	CFAP200|DRC8	EF-hand calcium binding domain 2	protein-coding	nan	6.354	nan	8.058	8.062	4.692	5.536	4.093	0.593	4.167	2.071	6.154	8.885	4.581	0.194	7.819	8.834	9.525	13.060	13.173	12.834	9.033	8.504	18.506	20.024	5.071	5.826	6.162	11.152	7.449	7.979	3.758	4.869	7.757	6.307	9.758	7.344	2.637	1.852	5.271	3.806	1.439	3.585	5.536	6.154	1.324	2.797	1.722	2.526
4207	chr2	8703360	8727580	+	0	NA	intron (NR_110257, intron 4 of 5)	intron (NR_110257, intron 4 of 5)	8452	NR_110257	101929567	Hs.634706	NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA	1.117	0.839	1.650	2.880	1.420	0.675	0.799	0.150	0.073	2.454	0.779	6.310	1.432	0.148	0.094	2.432	3.005	0.565	0.850	3.659	3.990	6.846	2.537	2.577	2.700	0.378	0.675	4.939	4.572	0.896	0.959	2.673	3.771	1.269	1.256	0.606	1.138	1.341	0.863	0.372	3.952	0.349	1.750	0.799	6.310	0.220	3.547	3.378	0.380
4089	chr19	44065136	44090493	+	0	NA	intron (NM_006297, intron 2 of 16)	AluJb|SINE|Alu	1916	NM_006297	7515	Hs.98493	NM_006297	ENSG00000073050	XRCC1	RCC	X-ray repair cross complementing 1	protein-coding	1.567	1.547	1.744	1.097	1.487	0.778	0.819	0.545	0.165	0.978	0.347	1.711	1.276	0.552	0.139	0.695	0.868	1.027	1.502	1.492	1.444	4.346	2.434	2.254	2.397	1.286	1.744	1.818	2.655	1.433	1.123	0.842	1.197	2.005	1.966	1.330	1.625	3.647	1.846	0.604	0.670	0.394	0.394	0.819	1.711	0.249	0.699	0.292	0.332
1501	chr11	70717248	70734627	+	0	NA	intron (NM_012309, intron 8 of 22)	intron (NM_012309, intron 8 of 22)	-7464	NR_037437	100500844		NR_037437	ENSG00000263744	MIR3664	mir-3664	microRNA 3664	ncRNA	nan	1.129	0.608	0.052	1.418	0.655	0.764	0.035	0.056	0.569	0.308	3.278	3.010	0.056	0.092	1.792	2.220	0.170	0.345	2.066	2.120	4.761	1.552	0.337	0.406	0.445	0.704	2.741	3.211	0.347	0.180	0.519	0.657	1.492	1.331	0.121	0.168	1.329	0.864	1.673	1.101	0.329	0.030	0.764	3.278	0.084	0.041	0.189	0.022
4808	chr20	2274361	2297112	+	0	NA	intron (NM_003245, intron 1 of 12)	MER21C|LTR|ERVL	9123	NM_003245	7053	Hs.2022	NM_003245	ENSG00000125780	TGM3	TGE	transglutaminase 3	protein-coding	0.903	1.357	0.506	1.469	1.025	0.572	0.309	0.078	0.050	0.704	0.214	0.826	1.628	0.029	0.072	0.634	0.608	0.167	0.271	0.304	0.399	5.804	1.474	0.362	0.355	0.142	0.348	4.196	3.467	0.326	0.099	0.325	0.454	0.844	0.774	0.134	0.210	0.923	0.589	0.661	2.643	0.164	0.042	0.309	0.826	0.086	0.482	0.156	0.038
549	chr1	153601764	153610888	+	0	NA	promoter-TSS (NM_001206612)	promoter-TSS (NM_001206612)	-132	NM_001206612	26097	Hs.611057	NM_015607	ENSG00000160679	CHTOP	C1orf77|FL-SRAG|FOP|SRAG|SRAG-3|SRAG-5|pp7704	chromatin target of PRMT1	protein-coding	nan	nan	3.003	2.277	2.017	0.778	2.152	1.574	0.310	1.752	0.831	2.301	7.868	1.912	0.166	3.057	2.509	3.978	5.523	3.993	nan	4.141	2.781	5.232	5.571	1.958	2.857	2.579	4.139	3.534	3.742	3.804	4.972	2.019	2.966	5.467	6.613	1.395	0.842	1.281	2.821	0.559	1.056	2.152	2.301	0.504	1.991	1.515	2.233
8002	chr8	145650810	145672313	+	0	NA	promoter-TSS (NR_106953)	promoter-TSS (NR_106953)	-559	NR_106953	102466271		NR_106953	ENSG00000276598	MIR6893	hsa-mir-6893	microRNA 6893	ncRNA	3.343	1.540	nan	3.219	2.322	1.350	1.650	0.865	0.428	0.487	0.263	2.970	4.929	1.289	0.104	1.674	1.884	1.952	2.903	nan	4.820	nan	0.877	4.061	4.357	1.160	1.829	2.122	2.945	1.482	1.480	1.883	3.064	1.036	1.250	1.614	2.083	1.668	0.719	3.373	2.291	0.341	0.913	1.650	2.970	0.465	1.655	1.295	0.823
6127	chr5	1172462	1184971	+	0	NA	promoter-TSS (NR_109911)	promoter-TSS (NR_109911)	4	NR_109911	101928857	Hs.593732	NR_109911	ENSG00000249201	CTD-3080P12.3	-	uncharacterized LOC101928857	ncRNA	0.439	0.793	1.355	0.153	0.373	0.128	0.472	0.185	0.228	0.268	0.157	0.201	0.417	0.103	0.074	11.893	14.302	0.304	nan	1.114	1.162	1.016	0.421	0.108	0.097	0.158	0.413	nan	0.783	nan	0.665	0.738	0.764	0.098	0.177	0.084	0.118	0.673	nan	0.129	0.229	0.015	0.089	0.472	0.201	0.163	0.194	0.252	0.049
7018	chr6	144903575	144910200	+	0	NA	intron (NM_007124, intron 50 of 73)	intron (NM_007124, intron 50 of 73)	180096	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA	nan	1.095	nan	0.277	0.801	0.315	0.487	0.442	0.024	0.886	0.641	1.599	0.783	0.122	0.120	0.534	0.437	7.712	4.918	2.384	3.327	2.493	0.868	0.313	0.355	0.137	0.174	0.161	0.200	1.166	0.593	0.312	0.379	6.774	7.328	0.268	0.584	2.162	0.808	0.039	0.175	1.852		0.487	1.599	0.015	0.046	0.044	0.111
3930	chr19	1353806	1363947	+	0	NA	intron (NR_024247, intron 4 of 13)	intron (NR_024247, intron 4 of 13)	2553	NR_024247	84939	Hs.515016	NM_032853	ENSG00000160953	MUM1	EXPAND1|HSPC211|MUM-1	melanoma associated antigen (mutated) 1	protein-coding	1.499	1.845	1.704	0.604	2.260	1.061	6.275	0.872	0.096	0.558	0.521	3.712	3.720	1.206	0.073	0.653	0.841	1.314	2.405	5.737	5.973	1.193	0.643	1.568	1.470	1.361	2.017	1.106	nan	1.827	1.437	1.174	2.102	1.365	1.336	0.896	1.359	1.449	0.746	1.425	1.806	0.254	0.328	6.275	3.712	0.565	1.811	0.186	0.541
946	chr1	241411580	241440283	+	0	NA	intron (NM_002924, intron 2 of 17)	intron (NM_002924, intron 2 of 17)	94599	NM_002924	6000	Hs.655739	NM_002924	ENSG00000182901	RGS7	-	regulator of G-protein signaling 7	protein-coding	nan	1.578	nan	1.483	0.958	0.468	0.383	0.115	0.158	0.259	0.224	0.854	0.625	0.036	0.100	0.314	0.162	0.494	0.473	0.520	0.591	4.920	1.945	0.124	0.104	0.133	0.251	0.708	1.074	0.399	0.219	0.061	0.113	0.244	0.195	0.398	0.811	1.072	0.619	0.027	0.052	0.030	0.066	0.383	0.854	0.021	0.399	0.007	0.103
7230	chr7	29279000	29394984	+	0	NA	intron (NM_001293070, intron 2 of 13)	MER61-int|LTR|ERV1	-88406	NR_120522	102724484	Hs.638665	NR_120522		LOC102724484	-	uncharacterized LOC102724484	ncRNA	2.232	1.893	2.752	1.660	1.369	0.653	0.604	0.113	0.108	1.067	0.640	1.024	2.224	0.046	0.145	1.811	1.722	0.521	nan	0.725	0.818	3.903	1.545	6.162	6.436	0.170	0.309	2.710	3.481	0.552	0.333	1.237	2.051	2.896	3.991	0.490	nan	2.044	1.056	1.084	0.873	0.942	0.819	0.604	1.024	0.298	0.626	1.303	0.393
1361	chr11	31000999	31015288	+	0	NA	intron (NM_020869, intron 1 of 19)	AluSc|SINE|Alu	6090	NM_020869	100506627	Hs.530438	NM_020869	ENSG00000170959	DCDC5	-	doublecortin domain containing 5	protein-coding	0.701	0.884	nan	0.153	0.761	0.449	0.170	0.078	0.091	0.142	0.241	0.025	0.472	0.068	0.124	0.470	0.277	0.208	0.386	0.221	0.265	2.226	0.426	0.237	0.252	2.396	2.487	0.116	0.128	0.334	0.165	0.200	0.314	4.675	5.739	0.112	nan	0.901	0.668	0.035	1.146	0.998	0.289	0.170	0.025	0.231	0.346	0.035	0.017
7020	chr6	144962755	144988659	+	0	NA	intron (NM_007124, intron 50 of 73)	intron (NM_007124, intron 50 of 73)	248916	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA	nan	0.976	nan	0.214	0.381	0.203	0.677	0.303	0.051	0.609	0.577	0.555	0.889	0.075	0.156	0.593	0.292	7.794	6.782	0.434	0.623	3.933	1.125	0.286	0.240	0.090	0.170	0.111	0.122	0.741	0.401	0.196	0.381	3.663	4.036	0.288	0.400	0.325	0.297	0.052	0.096	1.214	0.080	0.677	0.555	0.124	0.063	0.096	0.100
6737	chr6	36085309	36101585	+	0	NA	Intergenic	Intergenic	-4814	NR_072996	5603	Hs.178695	NM_002754	ENSG00000156711	MAPK13	MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta	mitogen-activated protein kinase 13	protein-coding	nan	2.570	nan	3.517	1.549	0.838	0.563	0.273	0.098	1.611	0.831	2.547	3.229	0.113	0.111	2.408	2.884	1.471	nan	nan	2.675	4.043	1.282	3.871	3.831	0.436	0.744	5.511	6.715	0.864	0.697	1.302	2.599	2.775	2.800	0.614	1.403	1.906	0.997	3.268	2.718	0.626	0.603	0.563	2.547	0.462	1.134	1.054	0.370
3864	chr18	60733873	60745098	+	0	NA	Intergenic	Intergenic	247128	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding	0.712	1.362	1.863	1.383	0.266	0.185	0.115	0.054	0.187	0.028	0.147	1.446	2.445	0.068	0.135	1.126	0.829	6.706	4.109	1.826	1.246	1.994	0.563	26.624	27.451	0.175	nan	3.197	3.325	0.479	0.235	0.908	1.186	0.311	0.497	0.143	0.238	1.815	1.356	0.222	0.104	0.051	0.284	0.115	1.446		0.199	0.564	0.033
5079	chr21	27103339	27110119	+	0	NA	promoter-TSS (NM_001197297)	promoter-TSS (NM_001197297)	-529	NM_001197297	2551	Hs.473470	NM_002040	ENSG00000154727	GABPA	E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07	GA binding protein transcription factor alpha subunit	protein-coding	4.965	2.581	4.927	4.585	3.643	2.344	3.419	2.020	0.355	1.436	0.784	4.485	10.017	3.147	0.091	7.600	6.420	5.799	7.440	7.398	7.879	5.064	3.052	11.951	12.598	6.095	7.310	6.506	9.300	12.029	10.530	4.427	7.418	5.137	5.836	6.766	6.486	4.361	2.514	2.446	4.029	0.929	2.388	3.419	4.485	1.179	2.391	2.220	2.615
3773	chr18	43403684	43418727	+	0	NA	intron (NM_213602, intron 1 of 5)	intron (NM_213602, intron 1 of 5)	5660	NM_213602	284266	Hs.287692	NM_213602	ENSG00000197046	SIGLEC15	CD33L3|HsT1361|SIGLEC-15	sialic acid binding Ig like lectin 15	protein-coding	nan	1.344	1.048	1.300	0.621	0.341	1.659	0.144	0.118	0.348	0.287	0.365	1.490	0.058	0.054	0.508	0.707	0.229	0.601	1.061	0.861	1.777	0.473	0.149	0.121	0.497	0.622	0.327	0.369	0.440	0.297	0.153	0.220	9.753	9.950	0.070	nan	6.548	3.299	0.443	0.612	3.564	0.058	1.659	0.365	0.252	0.250	0.039	0.082
5025	chr20	58670622	58693293	+	0	NA	Intergenic	Intergenic	19216	NR_109918	729296	Hs.534781	NR_109916		LOC729296	-	uncharacterized LOC729296	ncRNA	0.818	0.905	0.453	0.089	0.534	0.261	0.114	0.093	0.164	0.063	0.083	0.185	0.287	0.058	0.094	2.565	nan	0.204	0.332	0.384	0.468	0.344	0.134	0.585	0.629	0.206	0.363	0.295	0.327	0.961	1.043	0.575	0.520	0.043	0.066	0.159	0.307	0.639	0.642	0.935	2.386	0.017	0.021	0.114	0.185	0.182	0.284	0.246	0.131
1397	chr11	44958172	44991541	+	0	NA	Intergenic	L2b|LINE|L2	-1999	NM_001258324	9537	Hs.554791	NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding	nan	2.408	2.010	0.564	3.846	1.968	1.255	0.375	0.131	0.513	0.311	1.285	3.081	0.461	0.089	0.802	1.645	0.552	0.832	2.124	1.704	2.369	0.633	0.135	0.114	1.592	2.232	0.443	0.753	3.815	3.693	0.631	0.771	0.962	0.967	0.976	nan	1.310	0.838	2.395	1.154	0.322	0.575	1.255	1.285	2.299	0.131	0.181	0.552
3678	chr18	19597934	19608315	+	0	NA	Intergenic	Intergenic	145805	NR_102763	100128893	Hs.514745	NR_102763	ENSG00000266010	GATA6-AS1	BM742401|locus5689	GATA6 antisense RNA 1 (head to head)	ncRNA	0.582	0.653	1.068	0.673	0.145	0.062	0.444	0.101	0.078	0.167	0.140	0.073	0.322	0.042	0.060	0.417	0.215	0.273	0.497	0.280	0.377	9.617	2.350	0.369	0.291	0.087	0.188	0.104	0.116	0.912	0.787	0.183	0.223	0.284	0.164	0.404	0.638	0.548	0.591	0.043	0.051	0.019	0.069	0.444	0.073		0.069	0.029	0.133
6051	chr4	154168797	154196701	+	0	NA	intron (NM_001302694, intron 1 of 2)	intron (NM_001302694, intron 1 of 2)	4238	NM_001302694	23321	Hs.435711	NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding	nan	1.377	0.943	0.711	0.736	0.464	0.523	0.438	0.145	0.246	0.274	0.784	1.224	0.560	0.083	0.449	0.403	1.626	3.458	0.876	0.760	1.567	0.509	0.311	0.330	0.821	1.109	1.228	1.744	1.562	1.509	0.384	0.883	0.800	0.746	0.803	1.167	0.838	0.546	0.455	0.622	0.139	0.486	0.523	0.784	0.184	0.184	0.263	0.226
583	chr1	156022361	156026433	+	0	NA	promoter-TSS (NM_001145264)	promoter-TSS (NM_001145264)	-120	NM_001145264	28956	Hs.632483	NM_014017	ENSG00000116586	LAMTOR2	ENDAP|HSPC003|MAPBPIP|MAPKSP1AP|ROBLD3|Ragulator2|p14	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	nan	nan	6.494	4.164	4.333	3.111	5.341	2.831	0.436	2.991	1.047	4.708	31.801	4.894	0.163	7.623	6.832	7.547	10.862	9.376	nan	7.647	2.563	7.120	6.528	5.086	7.348	7.689	11.062	5.905	7.378	4.321	7.260	5.452	4.355	8.936	8.310	3.637	1.879	2.265	6.999	1.008	2.757	5.341	4.708	1.877	4.761	3.670	3.003
7852	chr8	103816572	103824167	+	0	NA	Intergenic	Intergenic	56059	NM_001301668	51582	Hs.459106	NM_015878	ENSG00000155096	AZIN1	AZI|AZIA1|OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding	6.171	nan	nan	5.139	5.469	3.513	4.057	5.675	0.891	2.001	0.928	5.942	10.907	5.079	0.093	1.987	3.137	4.646	8.291	7.026	5.379	7.728	3.217	10.869	10.887	2.630	nan	6.361	10.374	nan	3.082	2.319	3.702	4.605	4.453	2.952	nan	2.921	1.180	4.166	2.617	1.934	2.011	4.057	5.942	0.369	12.265	2.359	1.743
5063	chr21	16421810	16439125	+	0	NA	intron (NM_003489, intron 1 of 3)	MIR3|SINE|MIR	6659	NM_003489	8204	Hs.155017	NM_003489	ENSG00000180530	NRIP1	RIP140	nuclear receptor interacting protein 1	protein-coding	2.896	1.106	nan	0.695	1.759	0.859	0.607	0.009		0.752	0.356	0.014	0.235	0.970	0.108	0.615	0.561	1.223	1.262	2.521	2.439	1.503	0.588	0.131	0.127	0.169	0.269	1.095	1.743	4.209	4.458	0.689	1.944	4.221	3.264	3.850	4.626	1.297	1.075	0.036	0.058	1.041	2.973	0.607	0.014	0.011	0.006	0.721	1.638
7535	chr7	150053936	150087547	+	0	NA	3' UTR (NM_001099695, exon 3 of 3)	3' UTR (NM_001099695, exon 3 of 3)	2483	NM_014374	29803	Hs.647086	NM_013400	ENSG00000214022	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding	3.208	1.431	nan	2.708	3.145	1.560	2.592	0.961	0.158	2.721	1.340	6.764	3.805	2.046	0.134	4.730	5.081	2.194	3.083	4.458	4.208	4.156	1.837	3.933	4.100	1.593	2.184	3.899	4.995	3.199	2.956	3.380	5.310	4.020	3.770	3.028	4.708	4.126	1.968	2.296	2.914	1.164	0.745	2.592	6.764	0.779	3.336	3.439	1.425
591	chr1	156425113	156428530	+	0	NA	Intergenic	CpG	-27481	NM_001320453	10485	Hs.380027	NM_006365	ENSG00000125462	C1orf61	CROC4	chromosome 1 open reading frame 61	protein-coding	nan	nan	7.230	4.653	4.993	2.488	4.280	3.392	0.851	3.699	1.927	3.329	27.757	4.486	0.215	6.109	6.270	5.963	8.721	8.525	nan	8.371	4.238	8.028	8.362	4.626	5.181	11.686	16.376	4.586	5.213	3.404	6.346	6.362	5.449	3.921	6.722	3.221	2.020	3.842	7.759	1.109	1.369	4.280	3.329	1.760	4.509	4.295	2.149
2304	chr13	51328586	51333181	+	0	NA	intron (NM_198989, intron 1 of 1)	L1PA16|LINE|L1	-51108	NR_046551	100874074	Hs.734030	NR_046551	ENSG00000237152	DLEU7-AS1	-	DLEU7 antisense RNA 1	ncRNA	2.473	nan	nan	1.822	2.813	1.485	2.119	0.177	0.104	1.738	0.809	3.191	8.206	0.136	0.077	1.306	1.542	0.365	1.140	14.282	13.653	11.321	4.140	0.209	0.227	1.619	1.482	1.998	2.394	1.811	1.990	0.353	0.815	3.960	5.370	0.851	nan	0.323	0.197	1.580	1.792	1.325	3.372	2.119	3.191	2.363	0.817	0.395	0.215
6571	chr5	179244343	179250043	+	0	NA	promoter-TSS (NM_003900)	promoter-TSS (NM_003900)	-649	NM_003900	8878	Hs.587290	NM_003900	ENSG00000161011	SQSTM1	A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B	sequestosome 1	protein-coding	4.446	5.422	4.854	5.548	3.490	1.548	2.893	6.064	0.385	2.696	0.824	5.085	12.796	5.683	0.230	2.714	3.054	8.157	nan	4.770	4.059	8.592	5.698	8.316	8.100	1.994	nan	6.575	11.535	3.615	3.651	1.737	2.243	8.152	13.055	2.791	3.587	2.357	1.088	4.185	5.444	1.316	2.229	2.893	5.085	0.781	5.337	0.800	0.772
3846	chr18	56609517	56640653	+	0	NA	intron (NM_001318726, intron 7 of 9)	AluSz6|SINE|Alu	-77826	NR_024021	390858	Hs.716280	NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo	nan	1.076	1.345	0.250	0.422	0.141	0.304	0.354	0.116	0.188	0.174	0.482	0.421	0.084	0.087	0.661	0.521	0.722	0.655	0.733	0.899	0.888	0.374	1.444	1.345	0.644	0.965	0.858	0.958	2.017	2.019	0.182	0.318	0.323	0.365	1.164	4.368	nan	1.124	0.186	0.378	0.073	0.383	0.304	0.482	0.128	0.069	0.057	1.995
2804	chr14	106089200	106100550	+	0	NA	Intergenic	Intergenic	7422	NR_107038	102465871		NR_107038	ENSG00000274172	MIR8071-1	hsa-mir-8071-1	microRNA 8071-1	ncRNA	1.119	0.701	2.340	0.171	0.196	0.128	0.147	0.079	0.156	0.054	0.091	0.084	0.327	0.062	0.076	0.266	0.448	0.099	0.135	0.342	0.408	0.271	0.140	0.069	0.068	0.154	0.359	0.103	0.112	0.430	0.267	0.344	0.338	0.221	0.320	0.059	0.052	0.128	0.146	8.841	0.047	0.083	0.085	0.147	0.084	0.258	0.009	0.070	
2341	chr13	72356916	72378951	+	0	NA	intron (NM_080760, intron 2 of 8)	AluJo|SINE|Alu	73397	NM_080759	1602	Hs.129452	NM_004392	ENSG00000276644	DACH1	DACH	dachshund family transcription factor 1	protein-coding	nan	1.080	1.144	0.084	0.514	0.288	0.905	0.051	0.103	0.092	0.113	0.136	0.333	0.039	0.077	0.671	0.688	0.199	0.341	1.328	1.802	nan	0.151	0.110	0.122	0.686	0.838	0.252	0.256	nan	1.537	0.229	0.382	0.489	0.917	2.642	nan	0.188	0.188	0.028	0.144	0.225	0.237	0.905	0.136	0.392	0.023	0.081	1.335
4078	chr19	42494792	42504132	+	0	NA	Intergenic	Intergenic	-1034	NM_152296	478	Hs.515427	NM_152296	ENSG00000105409	ATP1A3	AHC2|ATP1A1|CAPOS|DYT12|RDP	ATPase Na+/K+ transporting subunit alpha 3	protein-coding	3.351	1.202	0.922	0.358	1.561	0.880	3.058	0.080		0.383	0.274	1.424	1.258	0.438	0.089	1.105	1.604	0.119	0.239	2.554	1.920	3.204	0.665	0.235	0.275	1.159	1.965	0.916	1.222	7.407	8.100	1.923	2.137	1.134	1.091	3.896	8.061	1.103	0.744	0.329	1.289	0.225	0.297	3.058	1.424	1.806	2.947	1.102	2.231
5123	chr21	40053629	40074184	+	0	NA	Intergenic	Intergenic	-30202	NM_004449	2078	Hs.473819	NM_004449	ENSG00000157554	ERG	erg-3|p55	ERG, ETS transcription factor	protein-coding	nan	0.553	0.912	1.163	0.363	0.258	0.138	0.065	0.135	0.435	0.254	1.774	0.523	0.032	0.093	0.348	0.205	0.151	0.245	0.930	1.482	nan	1.088	0.138	0.100	0.126	nan	1.402	1.911	0.444	0.160	0.167	0.172	0.348	0.502	0.139	0.184	3.531	1.800	0.022	0.108	0.070	0.027	0.138	1.774	0.090	0.663	0.038	0.072
6467	chr5	138627819	138634578	+	0	NA	intron (NM_001194956, intron 1 of 13)	intron (NM_001194956, intron 1 of 13)	1759	NM_001194956	9782	Hs.268939	NM_018834	ENSG00000015479	MATR3	ALS21|MPD2|VCPDM	matrin 3	protein-coding	5.280	3.963	nan	3.190	5.779	3.209	2.313	2.533	0.236	1.342	0.911	5.409	11.374	4.089	0.153	4.453	4.534	8.037	10.349	6.495	6.322	6.121	4.023	13.768	14.890	4.301	5.230	6.058	9.485	8.871	10.548	7.954	13.774	7.823	9.100	7.519	5.954	2.510	1.407	2.662	3.954	1.536	2.079	2.313	5.409	1.002	3.257	3.683	2.503
4990	chr20	48883058	48890827	+	0	NA	intron (NM_001278655, intron 1 of 3)	intron (NM_001278655, intron 1 of 3)	2919	NM_001278655	100506115	Hs.235484	NM_001278655		LINC01272	-	long intergenic non-protein coding RNA 1272	protein-coding	nan	nan	0.798	0.564	0.386	0.349	0.221	0.368	0.123	0.040	0.039	0.576	1.238	0.111	0.071	1.404	2.052	0.968	1.943	0.704	0.606	nan	0.389	0.954	1.018	1.169	1.654	0.473	0.865	nan	1.455	0.577	0.564	0.215	0.268	0.558	0.537	1.013	0.762	0.230	0.220	0.036	0.077	0.221	0.576	1.699	0.677	0.092	0.159
1920	chr12	41085477	41098212	+	0	NA	intron (NM_001256063, intron 1 of 15)	intron (NM_001256063, intron 1 of 15)	5600	NM_001843	1272	Hs.143434	NM_001843	ENSG00000018236	CNTN1	F3|GP135|MYPCN	contactin 1	protein-coding	1.868	nan	1.901	0.077	1.793	1.144	0.173	0.123	0.125	2.252	1.237	0.819	3.537	0.026	0.099	0.519	0.523	0.657	1.090	0.708	0.704	0.238	0.087	0.345	0.346	4.214	4.598	0.356	0.459	2.661	3.235	0.185	0.286	3.086	3.770	1.308	3.141	0.971	0.663	0.018	0.557	1.003	0.025	0.173	0.819	0.945	0.390	0.037	0.507
3827	chr18	54527312	54542686	+	0	NA	intron (NM_052834, intron 19 of 26)	intron (NM_052834, intron 19 of 26)	204351	NR_048536	100885779	Hs.742426	NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA	nan	0.988	1.051	0.204	0.322	0.178	1.055	0.078	0.063	0.225	0.155	0.298	0.359	0.043	0.091	0.460	0.393	0.175	0.280	0.655	0.873	0.797	0.339	0.503	0.573	0.840	1.069	0.692	0.696	0.556	0.244	0.259	0.262	3.110	5.915	0.252	0.500	nan	1.293	0.014	0.069	0.837	0.082	1.055	0.298	0.044	0.138	0.033	0.080
5157	chr21	45281076	45288840	+	0	NA	promoter-TSS (NM_020132)	promoter-TSS (NM_020132)	-158	NM_020132	56894	Hs.248785	NM_020132	ENSG00000160216	AGPAT3	LPAAT-GAMMA1|LPAAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	nan	2.046	5.534	0.929	2.748	1.222	2.739	0.788	0.268	1.903	0.666	5.192	4.369	1.344	0.089	2.250	3.260	2.325	3.288	4.468	4.064	nan	0.780	1.172	0.789	1.406	nan	4.196	6.230	2.662	2.787	2.049	3.914	3.950	2.154	2.241	2.438	3.382	1.770	5.147	5.821	0.907	2.044	2.739	5.192	0.691	0.854	1.557	0.830
4589	chr2	169419139	169426534	+	0	NA	intron (NM_203463, intron 3 of 9)	intron (NM_203463, intron 3 of 9)	-16617	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA	1.086	0.850	nan	0.214	0.299	0.153	0.135	0.306	0.043	0.145	0.112	0.162	0.358	0.050	0.055	1.910	2.281	7.794	4.044	0.242	0.402	0.283	0.109	3.687	3.652	1.104	1.364	0.311	0.232	0.967	0.751	1.215	2.304	0.069	0.055	0.564	1.356	0.369	0.306	0.060	0.073	0.077	0.076	0.135	0.162	0.078	0.016	1.671	0.181
2992	chr15	92395238	92410731	+	0	NA	intron (NR_135775, intron 1 of 10)	MIR|SINE|MIR	5454	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding	nan	nan	nan	0.995	0.786	0.352	1.501	0.601	0.146	0.425	0.372	1.131	2.926	0.384	0.102	1.080	1.724	2.182	2.202	2.134	2.238	nan	1.116	6.143	6.220	1.769	2.560	1.373	1.910	nan	5.021	0.678	0.899	1.357	1.489	0.163	nan	0.581	0.373	0.556	0.717	0.529	0.843	1.501	1.131	0.314	0.462	0.499	0.118
4942	chr20	35916369	35926225	+	0	NA	intron (NM_001003897, intron 1 of 2)	L1MC3|LINE|L1	3246	NM_022077	63905	Hs.6126	NM_022077	ENSG00000101363	MANBAL	-	mannosidase beta like	protein-coding	2.729	4.073	2.144	4.186	2.100	1.021	2.471	1.130	0.395	1.154	0.656	3.377	4.720	1.510	0.132	3.226	3.161	1.511	2.959	3.474	nan	7.956	2.720	3.953	4.290	2.209	3.242	4.972	6.608	3.058	3.155	1.572	2.196	1.892	2.315	2.264	nan	1.995	1.142	0.959	1.562	0.217	0.917	2.471	3.377	0.786	1.172	0.583	0.703
2639	chr14	61659879	61711016	+	0	NA	Intergenic	Intergenic	63083	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding	nan	nan	0.954	0.523	0.552	0.279	0.737	0.506	0.161	0.065	0.123	1.372	1.296	0.055	0.122	0.328	0.245	0.309	0.428	1.270	1.450	0.547	0.182	nan	0.588	0.145	0.295	2.896	nan	0.844	0.403	0.215	0.465	0.631	0.806	0.242	0.386	1.213	0.734	2.997	2.893	0.169	0.645	0.737	1.372	0.112	0.131	0.277	0.052
4409	chr2	76976568	76997174	+	0	NA	intron (NM_001282924, intron 3 of 3)	L2a|LINE|L2	-226220	NR_110284	101927907	Hs.382185	NR_110284	ENSG00000234653	LOC101927907	-	uncharacterized LOC101927907	ncRNA	nan	nan	0.622	0.184	0.195	0.117	0.229	0.040	0.062	0.186	0.216	0.090	1.680	0.021	0.130	0.322	0.167	0.208	0.256	0.448	0.479	1.851	0.538	0.260	0.228	0.164	0.270	0.452	0.528	0.386	0.142	0.131	0.210	0.491	0.477	0.353	0.665	nan	0.570	5.585	0.095	0.074	0.042	0.229	0.090	0.014	0.015	0.043	0.079
1625	chr11	110348622	110363862	+	0	NA	Intergenic	L1ME4a|LINE|L1	55581	NM_004109	2230	Hs.744	NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding	0.998	0.831	0.737	0.148	0.263	0.143	0.902	0.221	0.052	0.133	0.183	0.086	0.415	0.057	0.104	1.584	nan	0.254	0.263	0.640	0.734	1.611	0.333	0.305	0.339	0.520	nan	0.599	0.705	0.514	0.286	0.359	0.665	2.817	3.714	0.450	1.629	0.544	0.447	2.117	0.113	1.173	0.403	0.902	0.086	0.197	0.040	0.461	0.554
163	chr1	27667089	27678712	+	0	NA	intron (NM_001193308, intron 2 of 14)	MIRb|SINE|MIR	4417	NM_032872	84958	Hs.469175	NM_032872	ENSG00000142765	SYTL1	JFC1|SLP1	synaptotagmin like 1	protein-coding	2.564	3.092	nan	1.798	1.263	0.534	0.924	0.148	0.147	0.742	0.362	0.743	4.675	0.373	0.074	1.254	2.083	1.341	1.999	2.826	2.892	2.481	0.713	1.110	1.008	0.906	1.403	3.678	4.231	1.506	1.740	1.545	2.266	1.093	0.829	2.220	3.445	1.979	1.046	5.868	4.156	0.140	0.243	0.924	0.743	0.603	1.119	0.978	1.115
4070	chr19	41247272	41261006	+	0	NA	intron (NM_198476, intron 1 of 5)	AluSx1|SINE|Alu	1689	NM_198476	284325	Hs.585105	NM_198476	ENSG00000188493	C19orf54	-	chromosome 19 open reading frame 54	protein-coding	3.580	1.818	3.082	2.258	2.759	1.539	1.784	1.378	0.307	1.385	0.578	2.154	8.755	2.367	0.156	3.065	2.365	3.985	5.526	4.714	4.375	4.830	2.910	7.671	8.630	3.040	4.318	4.640	7.311	5.411	5.454	2.839	3.605	3.650	4.808	4.891	4.445	2.784	1.728	2.235	1.889	0.538	0.860	1.784	2.154	0.938	2.656	1.103	1.464
3898	chr18	74161704	74168285	+	0	NA	intron (NM_014643, intron 2 of 7)	intron (NM_014643, intron 2 of 7)	-38614	NR_136504	101927989	Hs.665186	NR_136504	ENSG00000265778	LOC101927989	-	uncharacterized LOC101927989	ncRNA	nan	nan	0.988	0.574	0.931	0.388	1.894	0.046	0.110	2.215	0.871	3.633	0.347	0.197	0.124	3.042	2.941	6.617	7.543	1.190	nan	11.139	8.840	1.326	1.420	0.062	0.160	5.065	9.599	2.974	2.348	1.660	2.947	3.749	3.975	4.706	5.140	2.481	1.587	0.030	1.428	0.318	0.361	1.894	3.633	0.030	2.318	1.509	0.808
1106	chr10	42397546	42410094	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	459673	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo	11.999	nan	12.521	8.589	12.717	7.961	8.192	7.417	23.110	7.244	11.530	6.001	12.068	4.088	7.857	8.899	4.938	7.269	10.087	7.543	8.875	3.812	3.062	6.467	6.143	4.729	6.328	5.211	4.433	9.568	3.675	4.341	7.079	1.514	2.463	4.183	5.146	2.477	3.829	2.205	4.775	2.101	3.039	8.192	6.001	1.826	3.534	3.817	2.833
1531	chr11	76153162	76157620	+	0	NA	promoter-TSS (NM_020193)	promoter-TSS (NM_020193)	-678	NM_001300943	56946	Hs.352588	NM_020193	ENSG00000158636	EMSY	C11orf30|GL002	EMSY, BRCA2 interacting transcriptional repressor	protein-coding	nan	2.907	2.591	5.648	4.889	2.704	3.848	2.979	0.250	3.145	1.346	4.771	13.150	2.956	0.208	8.638	7.020	7.120	9.858	10.480	9.796	8.628	5.031	25.539	28.311	6.295	7.637	7.061	12.166	9.017	10.123	4.857	8.063	7.676	9.108	7.305	4.907	4.429	2.219	4.515	3.378	1.150	2.266	3.848	4.771	0.568	4.877	2.133	1.208
2731	chr14	90862681	90873728	+	0	NA	intron (NM_006888, intron 3 of 5)	AluSx3|SINE|Alu	4877	NM_006888	801	Hs.282410	NM_006888	ENSG00000198668	CALM1	CALML2|CAMI|CPVT4|DD132|LQT14|PHKD|caM	calmodulin 1	protein-coding	5.043	3.024	nan	2.221	1.215	0.640	2.600	0.999	0.203	0.983	0.693	2.068	6.030	1.585	0.126	1.777	2.377	2.170	3.219	4.132	3.162	4.270	1.286	2.697	2.778	2.691	4.052	3.063	4.144	3.057	3.260	2.157	2.996	2.519	1.835	1.151	1.442	nan	1.217	3.228	4.239	0.743	2.175	2.600	2.068	0.760	0.824	0.928	0.292
5640	chr3	167764547	167771893	+	0	NA	intron (NM_014498, intron 1 of 15)	intron (NM_014498, intron 1 of 15)	45493	NM_014498	27333	Hs.143600	NM_014498	ENSG00000173905	GOLIM4	GIMPC|GOLPH4|GPP130|P138	golgi integral membrane protein 4	protein-coding	1.443	1.236	1.079	0.169	0.392	0.153	0.136	0.538	0.133	2.739	1.448	0.277	0.562	0.148	0.077	0.564	0.737	0.384	0.527	0.535	0.755	1.394	0.731	0.389	0.391	5.732	6.227	nan	0.639	nan	2.497	0.195	0.371	5.374	7.215	1.020	1.669	1.787	0.904	0.030	0.176	2.100	0.085	0.136	0.277	0.688	0.235	0.053	0.358
1333	chr11	19092897	19097801	+	0	NA	Intergenic	LTR9|LTR|ERV1	-13121	NM_054030	117194	Hs.350566	NM_054030	ENSG00000183695	MRGPRX2	MGRG3|MRGX2	MAS related GPR family member X2	protein-coding	0.661	nan	3.280	1.916	0.471	0.228	0.226	0.119	0.033	0.820	0.373	0.963	1.463	0.066	0.078	nan	12.374	0.585	0.671	3.177	2.355	6.039	3.041	2.706	2.906	0.351	nan	2.124	2.545	0.595	0.497	1.133	1.453	0.171	0.180	0.125	0.175	1.580	nan	0.057	0.162		0.016	0.226	0.963	0.060	0.063	0.160	0.056
8022	chr9	3730802	3751822	+	0	NA	Intergenic	MIRb|SINE|MIR	73226	NR_121586	101929302	Hs.122828	NR_121586	ENSG00000232104	RFX3-AS1	CVAT7	RFX3 antisense RNA 1	ncRNA	0.677	1.703	0.728	0.117	0.256	0.068	0.497	0.211	0.076	0.164	0.215	0.097	0.413	2.577	0.132	0.228	0.151	2.759	8.718	0.361	0.401	0.271	0.108	0.249	0.298	0.876	1.392	0.305	0.354	0.414	0.169	0.243	0.323	0.148	0.189	0.123	nan	0.766	0.885	0.106	0.152	0.027	0.121	0.497	0.097	0.055	0.208	0.062	0.030
7478	chr7	129780881	129795502	+	0	NA	Intergenic	Intergenic	57147	NM_032842	84928	Hs.267245	NM_032842	ENSG00000146842	TMEM209	NET31	transmembrane protein 209	protein-coding	1.788	1.622	3.679	0.734	0.674	0.329	0.824	0.261	0.153	1.355	0.910	1.812	1.526	0.298	0.135	0.602	1.280	0.417	1.141	1.816	1.668	2.480	0.594	0.557	0.577	0.625	1.194	2.046	1.980	4.435	4.970	1.351	1.903	1.512	1.457	0.467	0.891	3.158	1.390	2.975	0.590	0.475	0.293	0.824	1.812	0.722	0.863	0.459	0.208
2770	chr14	101104281	101165625	+	0	NA	intron (NR_024096, intron 1 of 1)	intron (NR_024096, intron 1 of 1)	11348	NR_024096	283601	Hs.379802	NM_001007560	ENSG00000196273	LINC00523	C14orf70	long intergenic non-protein coding RNA 523	ncRNA	1.559	1.451	1.050	0.288	1.648	0.786	2.597	0.133	0.102	0.373	0.260	1.163	5.510	0.073	0.097	0.170	0.135	0.158	0.206	1.656	1.711	1.271	0.420	0.076	0.078	0.352	0.564	2.645	2.864	1.738	1.519	0.371	0.447	1.070	0.953	0.203	0.367	1.597	0.906	2.503	0.691	0.242	0.338	2.597	1.163	0.900	1.564	0.206	0.048
3859	chr18	59846138	59857380	+	0	NA	intron (NM_176787, intron 1 of 30)	intron (NM_176787, intron 1 of 30)	2530	NM_012327	23556	Hs.157031	NM_012327	ENSG00000197563	PIGN	MCAHS|MCAHS1|MCD4|MDC4|PIG-N	phosphatidylinositol glycan anchor biosynthesis class N	protein-coding	nan	1.720	2.035	1.602	1.168	0.777	1.440	0.433	0.085	0.880	0.441	1.521	3.202	0.596	0.079	2.049	2.056	2.184	2.863	3.762	3.018	6.202	2.001	6.101	6.397	0.987	1.311	3.616	5.011	2.258	2.764	0.904	2.049	2.336	2.364	1.834	2.082	nan	2.054	0.669	0.798	0.449	0.666	1.440	1.521	0.258	0.633	0.289	0.569
7775	chr8	85083977	85106766	+	0	NA	promoter-TSS (NM_001100392)	promoter-TSS (NM_001100392)	-82	NM_001100393	138046	Hs.121663	NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding	1.238	nan	nan	0.702	1.058	0.586	0.755	0.095	0.096	0.384	0.165	0.398	6.248	0.052	0.086	0.740	0.716	0.223	0.319	3.710	3.288	2.780	1.136	5.363	5.121	5.570	6.613	nan	4.074	1.123	1.039	0.968	2.252	2.142	1.752	2.792	4.217	1.503	0.941	4.530	1.051	0.619	0.657	0.755	0.398	0.097	1.483	1.045	1.073
7288	chr7	55431644	55435989	+	0	NA	exon (NM_018697, exon 1 of 9)	exon (NM_018697, exon 1 of 9)	675	NM_018697	55915	Hs.595384	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like 2	protein-coding	nan	7.601	11.356	6.707	6.270	3.249	6.998	3.108	0.295	4.842	2.351	10.190	12.564	6.936	0.257	14.310	13.966	10.339	13.266	18.601	17.008	13.487	6.255	12.440	12.384	5.168	6.788	16.809	21.261	8.938	9.596	6.766	12.748	8.574	7.075	7.687	5.734	5.414	3.021	10.576	4.018	1.209	3.728	6.998	10.190	1.830	5.468	2.943	2.337
6165	chr5	9237945	9246121	+	0	NA	intron (NM_003966, intron 5 of 22)	intron (NM_003966, intron 5 of 22)	-188026	NR_039779	100616326		NR_039779	ENSG00000266415	MIR4636	mir-4636	microRNA 4636	ncRNA	0.644	1.134	1.256	0.148	0.147	0.059	0.032	0.192	0.039	0.094	0.142	0.029	0.460	0.013	0.154	5.034	4.617	5.986	nan	0.403	0.500	0.111	0.073	0.092	0.046	0.292	0.468	nan	0.429	nan	0.312	2.677	3.896	0.065	0.082	0.187	0.408	0.604	nan	0.020	0.071	0.024	0.049	0.032	0.029		0.062	1.364	0.015
4492	chr2	129162434	129184565	+	0	NA	Intergenic	HAL1|LINE|L1	-97328	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding	1.156	nan	nan	0.068	0.191	0.109	0.379	0.088	0.051	0.036	0.091	0.049	0.345	0.069	0.063	0.402	0.591	0.181	0.301	0.345	0.370	1.531	0.274	0.257	0.263	0.222	0.427	0.399	0.488	0.621	0.451	0.334	0.323	0.136	0.155	1.737	7.387	0.405	0.342	0.468	0.157	0.038	0.032	0.379	0.049	0.285	0.037	0.078	2.671
2156	chr12	116034931	116054672	+	0	NA	Intergenic	Intergenic	541658	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA	nan	nan	0.331	0.253	0.250	0.146	0.863	0.068	0.130	0.088	0.092	0.708	1.527	0.050	0.100	0.261	0.180	0.118	0.208	nan	nan	nan	0.072	0.554	0.620	0.170	0.243	nan	nan	0.168	0.069	0.151	0.187	0.133	0.153	0.195	0.348	nan	0.301	2.946	0.153	0.029	0.160	0.863	0.708	0.029	0.072	0.041	0.069
1577	chr11	92750561	92773123	+	0	NA	Intergenic	Intergenic	59053	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding	0.606	nan	0.652	0.153	0.533	0.378	1.022	0.414	0.078	0.103	0.121	0.179	2.573	0.033	0.136	0.987	0.651	0.840	nan	0.457	0.623	0.270	0.077	0.774	0.783	2.220	2.779	0.447	0.396	0.404	0.190	0.278	0.420	0.976	0.989	0.114	nan	1.236	0.834	11.891	1.440	0.143	0.060	1.022	0.179	0.013	0.084	0.080	0.065
7511	chr7	139702198	139720453	+	0	NA	intron (NM_001130966, intron 14 of 16)	ALINE|LINE|RTE	52196	NM_022750	64761	Hs.12646	NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding	nan	nan	nan	0.221	0.353	0.167	0.168	0.150	0.098	0.311	0.202	7.999	0.288	0.095	0.130	0.460	0.396	0.276	0.327	0.826	0.770	nan	0.277	0.571	0.585	0.148	nan	0.383	0.738	nan	0.240	0.375	0.355	0.151	0.208	0.322	0.674	1.696	nan	0.110	0.224	0.021	0.061	0.168	7.999	0.069	0.078	0.033	0.089
1572	chr11	92254663	92292567	+	0	NA	intron (NM_001008781, intron 2 of 24)	intron (NM_001008781, intron 2 of 24)	188353	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10|hFat3	FAT atypical cadherin 3	protein-coding	0.698	nan	0.584	0.248	0.233	0.105	0.264	0.145	0.051	0.115	0.131	0.120	0.758	0.075	0.119	4.150	3.637	3.063	nan	0.606	0.734	0.154	0.067	5.220	5.222	0.589	0.882	0.824	0.623	0.348	0.189	4.087	4.884	0.466	0.521	0.264	nan	0.796	0.571	0.192	0.188	0.103	0.071	0.264	0.120	0.015	0.115	2.582	0.166
2851	chr15	40441546	40455172	+	0	NA	Intergenic	L2c|LINE|L2	-4851	NM_001211	701	Hs.513645	NM_001211	ENSG00000156970	BUB1B	BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1	BUB1 mitotic checkpoint serine/threonine kinase B	protein-coding	1.298	1.191	nan	1.644	1.012	0.540	1.381	0.411	0.177	0.830	0.346	4.254	4.166	0.459	0.106	2.167	1.943	1.845	3.268	3.979	3.034	1.740	0.403	1.873	2.086	1.122	nan	4.124	4.716	1.962	1.973	1.648	2.262	1.125	1.085	1.242	1.167	1.580	0.992	1.715	0.422	0.181	0.665	1.381	4.254	0.320	0.563	1.399	0.199
886	chr1	224685000	224693679	+	0	NA	intron (NM_001322302, intron 2 of 6)	AluSx|SINE|Alu	66742	NM_001322303	149111	Hs.731723	NM_152495	ENSG00000143786	CNIH3	CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	3.176	nan	4.682	0.932	2.389	1.219	3.330	1.829	0.315	1.702	1.162	3.569	3.573	0.178	0.126	1.460	2.783	4.916	10.304	4.394	nan	3.801	1.000	1.237	1.032	3.192	3.301	2.994	2.447	3.645	4.263	0.383	0.563	3.898	3.024	1.305	3.184	2.297	1.153	0.102	0.416	1.343	1.212	3.330	3.569	1.428	0.917	0.182	0.911
4984	chr20	47402999	47425523	+	0	NA	intron (NM_020820, intron 1 of 39)	intron (NM_020820, intron 1 of 39)	30159	NM_020820	57580	Hs.153310	NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding	nan	nan	0.665	0.078	0.194	0.165	0.444	0.710	0.222	0.151	0.120	0.117	0.522	0.072	0.081	2.701	4.471	0.256	0.317	0.605	0.600	nan	0.505	0.488	0.473	0.476	0.897	0.380	0.467	nan	4.004	0.717	0.984	0.203	0.211	0.490	0.828	0.587	0.560	0.063	0.232	0.050	0.302	0.444	0.117	0.494	0.135	0.436	0.360
4733	chr2	222388613	222408574	+	0	NA	intron (NM_001304536, intron 4 of 18)	intron (NM_001304536, intron 4 of 18)	38485	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding	nan	1.085	1.009	0.274	0.714	0.379	0.355	0.124	0.065	0.250	0.125	0.167	nan	0.042	0.105	0.443	0.370	2.831	6.196	0.236	0.316	0.526	0.142	0.825	0.933	1.114	1.494	0.525	nan	0.348	0.144	1.071	1.750	0.604	1.051	0.347	nan	0.408	0.364	0.176	0.076	0.114	0.083	0.355	0.167	0.054	0.390	0.813	0.181
2835	chr15	31771834	31780932	+	0	NA	exon (NM_130901, exon 14 of 14)	exon (NM_130901, exon 14 of 14)	157325	NM_015995	51621	Hs.376443	NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel like factor 13	protein-coding	0.574	nan	nan	0.067	0.238	0.178	0.296	0.097	0.070	0.189	0.166	0.184	0.260	0.108	0.059	0.620	1.143	0.166	0.357	0.549	0.791	0.380	0.133	0.173	0.187	0.367	0.553	0.229	0.305	1.408	1.389	0.297	0.380	0.209	0.260	0.224	0.226	0.149	0.118	0.071	0.048	0.041	0.070	0.296	0.184	1.340	0.063	0.054	0.076
1329	chr11	17409401	17415811	+	0	NA	Intergenic	Intergenic	-1728	NM_001166290	3767	Hs.248141	NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3	potassium voltage-gated channel subfamily J member 11	protein-coding	1.061	nan	5.108	1.877	1.329	0.750	1.015	0.122	0.025	1.808	1.070	7.059	3.603	0.617	0.058	nan	3.438	1.525	1.411	6.750	5.881	5.456	0.959	12.590	12.810	0.833	nan	6.881	5.612	1.689	1.511	1.541	3.910	3.655	2.800	0.923	1.726	3.639	nan	5.946	4.074	0.718	0.545	1.015	7.059	0.184	1.249	1.364	0.273
3728	chr18	32068039	32075772	+	0	NA	Intergenic	Intergenic	-1349	NM_032979	1837	Hs.643454	NM_001390	ENSG00000134769	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin alpha	protein-coding	nan	1.916	0.757	2.156	0.631	0.330	3.560	0.291	0.047	1.540	0.848	1.749	5.115	0.420	0.055	1.161	1.090	0.865	1.560	3.870	2.478	5.350	4.929	0.791	0.777	1.693	2.146	nan	8.449	1.984	2.303	0.133	0.283	8.156	7.562	0.297	0.437	4.380	2.436	0.462	1.152	2.022	0.801	3.560	1.749	0.239	0.949	0.055	0.095
7410	chr7	102064020	102075985	+	0	NA	Intergenic	Intergenic	-3975	NM_001126340	80228	Hs.363308	NM_032831	ENSG00000160991	ORAI2	C7orf19|CBCIP2|MEM142B|TMEM142B	ORAI calcium release-activated calcium modulator 2	protein-coding	nan	0.941	2.162	0.690	0.816	0.217	1.407	0.499	0.149	0.445	0.305	0.704	1.633	1.327	0.155	3.369	5.561	0.760	1.242	1.319	1.347	1.703	0.643	0.571	0.663	0.664	1.053	0.934	1.356	1.431	1.477	2.416	3.502	1.444	1.280	1.275	nan	1.697	0.974	0.506	1.867	0.300	1.686	1.407	0.704	0.202	0.541	3.221	0.218
5562	chr3	135964515	135974842	+	0	NA	intron (NM_000532, intron 1 of 14)	intron (NM_000532, intron 1 of 14)	511	NM_001178014	5096	Hs.63788	NM_000532	ENSG00000114054	PCCB	-	propionyl-CoA carboxylase beta subunit	protein-coding	2.315	nan	nan	1.672	1.956	1.225	0.722	0.572	0.390	1.808	0.882	1.312	1.383	0.586	0.100	1.710	2.305	2.117	2.636	2.837	2.471	6.853	2.624	4.050	4.083	1.318	2.130	2.054	2.743	nan	5.754	1.853	2.379	1.085	1.018	2.009	2.911	1.835	1.093	1.052	1.155	0.221	0.590	0.722	1.312	0.536	0.422	1.038	0.871
3568	chr17	75131475	75173208	+	0	NA	intron (NM_001039573, intron 3 of 17)	intron (NM_001039573, intron 3 of 17)	15336	NM_003003	6397	Hs.464184	NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding	1.446	2.100	1.553	1.475	0.976	0.568	0.673	1.452	0.260	2.529	1.396	1.988	1.979	0.480	0.158	3.744	3.044	1.885	1.408	1.461	1.522	4.772	1.749	12.776	12.933	nan	1.320	1.768	2.774	1.231	0.872	1.386	1.870	2.572	3.353	0.663	1.099	nan	0.917	0.246	1.070	0.985	0.412	0.673	1.988	0.193	0.875	1.583	0.202
3777	chr18	44333706	44356687	+	0	NA	Intergenic	Intergenic	-8064	NM_001307987	29906	Hs.465025	NM_013305	ENSG00000101638	ST8SIA5	SIAT8-E|SIAT8E|ST8SiaV	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding	nan	1.489	1.154	1.930	2.065	0.885	1.735	0.062	0.042	1.031	0.925	2.602	2.180	0.061	0.093	0.289	0.224	0.177	0.322	3.007	2.896	6.481	2.997	0.149	0.116	0.256	0.455	0.416	0.756	1.568	1.619	0.106	0.127	3.494	3.921	0.286	nan	5.563	2.572	0.075	0.299	1.504	0.334	1.735	2.602	0.521	0.414	0.039	0.177
320	chr1	55993035	56009521	+	0	NA	Intergenic	L1PREC2|LINE|L1	309964	NR_039618	100616272		NR_039618	ENSG00000265822	MIR4422	mir-4422	microRNA 4422	ncRNA	1.841	0.892	1.125	0.108	0.421	0.146	0.380	0.448	0.128	0.094	0.093	0.210	0.394	0.033	0.091	0.416	0.325	1.877	6.634	0.646	0.812	0.174	0.102	0.420	0.505	0.749	1.070	0.627	0.553	0.434	0.258	0.283	0.301	0.049	0.061	0.516	nan	0.648	0.543	0.071	0.124		0.082	0.380	0.210	0.176	0.036	0.180	0.581
6273	chr5	56777384	56802032	+	0	NA	Intergenic	Intergenic	-11072	NM_001017992	345651	Hs.482167	NM_001017992	ENSG00000169067	ACTBL2	ACT	actin, beta like 2	protein-coding	nan	nan	0.700	0.036	0.467	0.292	0.254	0.850	0.058	0.108	0.093	0.015	1.481	1.002	0.135	0.191	0.192	2.558	7.048	0.148	0.178	nan	0.077	0.152	0.136	1.144	1.343	0.258	0.220	nan	0.218	0.077	0.083	0.122	0.168	0.256	0.551	0.534	0.461	0.533	0.091	0.031	0.087	0.254	0.015	0.067	0.041	0.020	0.095
5663	chr3	171909573	171944180	+	0	NA	intron (NM_001135095, intron 3 of 25)	MER52A|LTR|ERV1	168532	NM_001135095	64778	Hs.744888	NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding	1.571	1.763	1.122	1.611	0.620	0.371	1.207	1.043	0.196	0.545	0.439	1.743	0.363	0.175	0.075	0.334	0.247	1.013	1.432	0.704	0.773	0.884	0.265	0.249	0.266	2.235	2.954	2.811	4.132	0.578	0.355	0.694	1.092	1.322	1.744	0.344	0.629	1.322	0.867	0.360	0.157	0.305	0.116	1.207	1.743	0.106	0.372	1.214	0.197
6561	chr5	175250211	175271460	+	0	NA	intron (NM_006650, intron 2 of 4)	intron (NM_006650, intron 2 of 4)	37225	NM_006650	10814	Hs.193235	NM_006650	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding	1.041	1.276	1.412	0.218	0.213	0.106	0.371	0.060	0.098	0.570	0.269	0.795	2.701	0.071	0.084	0.310	0.552	0.138	nan	2.116	1.985	1.550	0.266	0.078	0.065	1.557	nan	0.597	0.717	0.646	0.497	0.187	0.300	2.092	2.668	0.616	1.026	0.624	0.412	1.023	0.554	0.723	1.163	0.371	0.795	0.676	0.457	0.095	0.157
3528	chr17	71251730	71288815	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-12253	NM_001129885	642843	Hs.534707	NM_001129885	ENSG00000187959	CPSF4L	-	cleavage and polyadenylation specific factor 4 like	protein-coding	1.270	0.835	1.723	0.591	0.804	0.398	0.567	0.462	0.226	0.252	0.167	0.462	0.911	0.062	0.078	2.197	2.808	3.453	7.496	0.870	0.929	1.225	0.420	0.666	0.759	nan	0.645	0.641	0.968	1.024	0.577	1.426	2.114	0.532	0.645	0.531	1.288	nan	0.555	0.055	0.484	0.164	0.880	0.567	0.462	0.125	0.164	1.340	0.293
3756	chr18	40248752	40261117	+	0	NA	intron (NR_046174, intron 7 of 9)	intron (NR_046174, intron 7 of 9)	440723	NM_001272077	6014	Hs.464985	NM_002930	ENSG00000152214	RIT2	RIBA|RIN|ROC2	Ras like without CAAX 2	protein-coding	nan	1.090	1.221	5.966	1.565	0.871	0.530	0.030	0.053	0.911	0.397	1.407	0.780	0.026	0.046	0.343	0.282	0.169	0.252	2.983	3.652	8.074	5.315	0.083	0.074	0.807	1.099	11.377	11.852	0.475	0.195	0.076	0.080	2.312	1.674	0.310	nan	6.876	3.212	0.126	1.337	0.261	0.045	0.530	1.407	0.071	1.156	0.008	0.081
811	chr1	204677611	204733971	+	0	NA	Intergenic	L3|LINE|CR1	-51194	NM_201630	10446	Hs.26312	NM_006338	ENSG00000170382	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding	1.300	1.614	1.901	0.228	0.798	0.493	0.503	0.130	0.153	0.351	0.232	0.440	1.638	0.071	0.125	0.629	0.726	0.594	0.707	0.786	0.857	0.952	0.266	nan	nan	0.951	1.398	1.589	1.045	0.612	0.516	0.232	0.313	0.809	0.878	1.396	5.096	1.290	0.810	0.258	0.431	0.258	0.083	0.503	0.440	0.069	1.182	0.148	1.602
465	chr1	116794650	116817902	+	0	NA	Intergenic	LTR56|LTR|ERV1	-109519	NM_000701	476	Hs.371889	NM_000701	ENSG00000163399	ATP1A1	-	ATPase Na+/K+ transporting subunit alpha 1	protein-coding	nan	1.016	1.499	0.336	0.378	0.193	0.288	0.122	0.051	0.033	0.082	0.790	0.448	0.075	0.107	0.540	0.563	0.480	1.121	0.860	nan	0.369	0.158	0.433	0.356	0.472	0.770	1.434	1.000	2.722	2.942	0.698	0.844	0.232	0.186	1.420	4.387	0.721	0.567	1.460	0.161	0.041	3.141	0.288	0.790	1.034	0.188	0.257	0.577
819	chr1	205598947	205607048	+	0	NA	promoter-TSS (NM_021795)	promoter-TSS (NM_021795)	-997	NM_021795	2005	Hs.497520	NM_001973	ENSG00000158711	ELK4	SAP1	ELK4, ETS transcription factor	protein-coding	5.144	4.839	6.827	2.485	3.659	1.905	2.905	2.182	0.238	1.825	0.980	3.156	4.818	2.488	0.182	3.110	3.480	5.231	8.219	6.126	5.373	3.694	2.282	nan	nan	2.586	3.556	4.936	7.741	3.336	4.066	1.404	2.106	8.551	8.585	3.700	3.926	2.480	1.609	2.304	4.650	2.427	1.199	2.905	3.156	0.936	1.681	0.756	1.183
5280	chr22	41761774	41768503	+	0	NA	intron (NM_001145398, intron 1 of 3)	intron (NM_001145398, intron 1 of 3)	1801	NM_001145398	7008	Hs.181159	NM_003216	ENSG00000167074	TEF	-	TEF, PAR bZIP transcription factor	protein-coding	3.207	nan	2.195	0.954	0.793	0.405	0.749	0.490	0.143	0.490	0.283	1.013	0.760	0.179	0.053	1.366	1.927	0.656	1.242	2.283	1.909	2.949	0.634	0.658	0.675	1.749	nan	4.857	6.464	10.179	13.976	0.572	0.646	0.586	0.827	1.358	3.264	0.878	0.722	0.935	3.880	0.126	0.684	0.749	1.013	1.717	0.662	0.117	1.509
1177	chr10	88514618	88518360	+	0	NA	promoter-TSS (NM_004329)	promoter-TSS (NM_004329)	93	NM_004329	657	Hs.524477	NM_004329	ENSG00000107779	BMPR1A	10q23del|ACVRLK3|ALK3|CD292|SKR5	bone morphogenetic protein receptor type 1A	protein-coding	6.810	3.243	5.219	3.023	6.051	3.490	3.351	6.133	0.685	2.151	0.764	6.903	8.842	5.946	0.107	6.786	8.266	12.258	13.702	9.069	7.123	10.744	6.551	8.245	7.802	5.227	6.905	8.562	12.848	4.859	5.994	2.761	5.701	4.434	3.844	8.393	7.283	2.788	1.771	3.846	3.168	0.920	2.940	3.351	6.903	1.303	2.030	2.061	2.299
1189	chr10	101765735	101788312	+	0	NA	Intergenic	AluSx|SINE|Alu	-7313	NM_015221	23268	Hs.500771	NM_015221	ENSG00000107554	DNMBP	ARHGEF36|TUBA	dynamin binding protein	protein-coding	nan	nan	0.932	0.556	1.201	0.569	0.278	0.381	0.107	0.309	0.157	2.087	3.518	0.826	0.096	0.772	1.233	0.821	0.913	2.814	2.581	5.365	1.613	0.486	0.477	0.996	nan	7.161	5.795	0.792	0.848	0.232	0.475	1.123	0.710	0.469	nan	1.790	0.923	3.486	1.805	0.405	0.095	0.278	2.087	0.231	1.150	0.176	0.182
3680	chr18	19836077	19856264	+	0	NA	Intergenic	Intergenic	96772	NM_005257	2627	Hs.514746	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding	0.530	0.714	0.724	0.161	0.462	0.295	0.273	0.082	0.064	0.078	0.077	0.077	0.275	0.022	0.095	0.401	0.269	0.247	0.485	0.268	0.312	4.133	1.222	0.281	0.294	0.078	0.177	0.093	0.085	0.375	0.169	0.205	0.196	0.096	0.191	0.208	0.517	0.379	0.421	0.019	0.044	0.019	0.031	0.273	0.077	0.019	0.025	0.054	0.067
8185	chr9	88962947	88977815	+	0	NA	promoter-TSS (NM_001185074)	promoter-TSS (NM_001185074)	-979	NM_001185059	79670	Hs.597057	NM_024617	ENSG00000083223	ZCCHC6	PAPD6|TUT7	zinc finger CCHC-type containing 6	protein-coding	0.879	1.179	1.141	1.491	0.572	0.193	0.396	0.831	0.043	0.496	0.362	0.668	1.223	0.416	0.077	0.743	0.581	6.013	6.930	1.149	1.188	0.969	0.380	1.215	1.269	0.629	0.848	1.369	1.702	0.569	0.425	0.457	0.852	0.779	0.937	0.606	0.897	1.015	0.580	0.248	0.252	0.139	0.212	0.396	0.668	0.217	0.352	0.220	0.235
3768	chr18	42471331	42486429	+	0	NA	intron (NM_015559, intron 3 of 5)	intron (NM_015559, intron 3 of 5)	71251	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA	nan	1.128	2.232	2.242	0.911	0.436	0.862	0.125	0.074	0.954	0.651	2.677	2.274	0.014	0.075	0.382	0.410	0.244	0.473	3.901	4.161	4.265	1.747	0.065	0.065	0.693	0.891	2.229	3.043	0.927	0.833	0.100	0.321	2.338	2.477	0.190	nan	5.168	2.797	1.096	0.259	0.777	0.100	0.862	2.677	0.309	1.116	0.026	0.155
385	chr1	85149624	85187656	+	0	NA	Intergenic	Charlie2b|DNA|hAT-Charlie	-12400	NM_014021	117178	Hs.22587	NM_014021	ENSG00000117155	SSX2IP	ADIP|hMsd1	SSX family member 2 interacting protein	protein-coding	1.976	nan	nan	0.527	0.847	0.437	0.440	0.355	0.093	0.432	0.334	0.891	1.387	0.633	0.140	0.769	0.936	0.623	0.842	1.691	1.939	0.783	0.305	0.641	0.646	3.968	4.557	1.396	1.855	2.301	2.227	0.413	0.808	0.358	0.283	2.913	6.947	0.926	0.704	0.412	0.548	0.055	1.087	0.440	0.891	0.146	0.227	0.282	2.184
7440	chr7	114169048	114174938	+	0	NA	intron (NM_148898, intron 2 of 17)	intron (NM_148898, intron 2 of 17)	105436	NM_001172767	93986	Hs.282787	NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding	2.072	1.008	2.514	0.208	1.796	0.766	0.435	1.726	0.219	0.374	0.364	3.152	0.899	0.095	0.173	0.575	0.339	0.363	1.631	0.399	0.561	5.129	8.641	0.262	0.383	2.588	3.306	2.409	6.321	1.010	0.696	0.148	0.402	3.752	4.315	1.357	2.485	0.907	0.721	0.142	2.330	0.861	0.656	0.435	3.152	0.247	0.275	0.118	1.102
5095	chr21	34119608	34145423	+	0	NA	intron (NR_027873, intron 5 of 17)	intron (NR_027873, intron 5 of 17)	11654	NR_027873	94104	Hs.644004	NM_013329	ENSG00000159086	PAXBP1	BM020|C21orf66|FSAP105|GCFC|GCFC1	PAX3 and PAX7 binding protein 1	protein-coding	1.910	1.244	2.065	0.809	1.013	0.515	0.625	0.483	0.094	0.368	0.183	0.859	2.131	0.516	0.104	1.628	1.470	1.771	2.517	1.903	1.927	1.980	0.668	2.430	2.453	1.486	1.861	1.621	2.555	3.116	2.885	0.994	1.827	1.118	1.096	2.091	4.055	nan	0.966	0.558	0.882	0.180	0.466	0.625	0.859	0.340	0.474	0.483	0.822
2578	chr14	46711632	46734157	+	0	NA	intron (NR_102702, intron 3 of 3)	intron (NR_102702, intron 3 of 3)	189532	NR_102702	100506412	Hs.207545	NR_102699	ENSG00000258700	LINC00871	-	long intergenic non-protein coding RNA 871	ncRNA	nan	0.757	nan	0.120	0.208	0.135	0.238	0.097	0.093	0.035	0.105	0.101	0.247	0.048	0.102	0.409	0.266	0.245	0.280	0.299	0.405	0.157	0.070	0.244	0.293	3.729	4.176	0.214	0.223	0.531	0.251	0.114	0.192	0.104	0.108	0.314	0.542	0.467	0.492	0.044	0.071	0.021	0.095	0.238	0.101	0.013	0.031	0.017	0.121
8087	chr9	22002693	22014039	+	0	NA	intron (NM_004936, intron 1 of 1)	intron (NM_004936, intron 1 of 1)	946	NM_004936	1030	Hs.72901	NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	1.118	nan	nan	1.063	1.242	0.526	0.766	1.009	0.173	0.583	0.423	1.245	2.872	2.235	0.095	0.533	0.701	1.195	2.364	2.340	2.244	1.497	0.518	0.710	0.629	1.665	2.273	1.164	1.481	1.778	1.482	0.921	1.922	0.979	0.932	1.012	1.381	1.719	0.986	0.347	4.180	0.168	2.856	0.766	1.245	0.068	0.420	0.513	0.296
7469	chr7	127670366	127694145	+	0	NA	intron (NM_014390, intron 16 of 23)	intron (NM_014390, intron 16 of 23)	-11253	NM_022143	64101	Hs.655003	NM_022143	ENSG00000128594	LRRC4	NAG14|NGL-2	leucine rich repeat containing 4	protein-coding	1.104	0.642	1.027	0.269	0.411	0.196	0.611	0.192	0.090	0.092	0.141	0.362	0.440	0.238	0.134	0.591	0.477	0.286	0.460	0.649	0.634	0.582	0.217	0.390	0.379	0.551	0.895	0.546	0.679	0.792	0.727	0.345	0.507	0.455	0.474	0.544	0.824	1.777	1.164	2.936	0.166	0.118	0.112	0.611	0.362	0.375	0.102	0.046	0.129
7213	chr7	26436339	26467224	+	0	NA	intron (NR_015364, intron 1 of 4)	MLT1B|LTR|ERVL-MaLR	8673	NR_015364	441204	Hs.587432	NR_015364		LOC441204	-	uncharacterized LOC441204	ncRNA	2.273	1.481	3.071	2.934	0.900	0.432	0.767	0.123	0.119	0.541	0.336	0.334	0.771	0.264	0.166	2.291	2.292	1.133	nan	0.987	0.957	2.950	0.833	1.206	1.283	0.977	1.383	4.767	3.747	1.063	0.862	0.829	1.212	1.390	1.232	1.530	nan	0.882	0.544	1.601	1.162	0.312	1.007	0.767	0.334	0.293	0.171	0.590	1.152
4781	chr2	238766827	238781815	+	0	NA	intron (NM_005855, intron 1 of 2)	intron (NM_005855, intron 1 of 2)	6134	NM_001308353	10267	Hs.471783	NM_005855	ENSG00000132329	RAMP1	-	receptor activity modifying protein 1	protein-coding	1.295	nan	2.779	0.121	0.350	0.223	0.726	0.077	0.066	0.086	0.055	0.142	0.393	0.101	0.106	0.544	0.786	2.276	3.591	0.485	0.525	0.769	0.286	0.340	0.349	0.572	0.911	0.782	nan	0.670	0.869	5.254	7.123	0.296	0.316	1.826	3.396	0.356	0.366	0.166	0.054	0.038	0.031	0.726	0.142	0.221	0.613	4.705	0.834
4716	chr2	218468589	218488351	+	0	NA	intron (NR_026597, intron 1 of 12)	intron (NR_026597, intron 1 of 12)	142846	NR_026597	729582	Hs.572788	NR_026597		DIRC3	-	disrupted in renal carcinoma 3	ncRNA	nan	0.773	nan	1.368	0.702	0.444	0.384	0.125	0.016	0.522	0.277	0.741	0.769	0.033	0.098	0.350	0.236	0.228	0.396	0.991	0.744	1.455	0.269	0.311	0.321	0.232	0.404	6.479	nan	0.757	0.611	0.162	0.216	0.416	0.207	1.131	2.416	1.456	0.797	0.331	0.322	0.052	0.072	0.384	0.741	0.044	1.000	0.035	1.027
7520	chr7	141436555	141441546	+	0	NA	intron (NM_001256511, intron 2 of 6)	intron (NM_001256511, intron 2 of 6)	643	NM_001256510	6742	Hs.490394	NM_003143	ENSG00000106028	SSBP1	Mt-SSB|SOSS-B1|SSBP|mtSSB	single stranded DNA binding protein 1	protein-coding	2.750	1.300	2.026	2.463	2.319	1.218	1.409	1.318	0.192	1.066	1.115	2.722	3.506	4.458	0.270	3.145	2.937	3.223	5.728	2.794	3.106	5.399	1.848	20.634	21.402	2.233	3.173	4.262	5.005	3.708	3.284	3.065	4.184	3.083	3.373	2.830	3.980	4.639	nan	1.376	1.103	0.552	0.901	1.409	2.722	0.293	1.055	1.132	0.568
1166	chr10	81093644	81109279	+	0	NA	Intergenic	AluSx|SINE|Alu	-5759	NM_005729	10105	Hs.381072	NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding	1.501	1.621	4.090	2.031	1.121	0.492	0.772	0.771	0.174	1.441	0.478	3.593	4.091	0.312	0.064	1.321	1.465	1.549	2.355	2.864	3.146	6.726	2.379	1.031	1.009	0.701	1.102	4.175	5.745	0.908	1.227	0.698	0.937	1.460	0.984	1.223	1.471	2.352	1.054	0.856	2.537	0.353	0.482	0.772	3.593	0.296	0.408	0.496	0.695
8381	chrX	40942888	40955844	+	0	NA	intron (NM_001039591, intron 1 of 44)	AluJb|SINE|Alu	4478	NM_001039591	8239	Hs.77578	NM_004652	ENSG00000124486	USP9X	DFFRX|FAF|FAM|MRX99|MRXS99F	ubiquitin specific peptidase 9, X-linked	protein-coding	3.062	2.838	nan	2.243	1.779	1.121	1.432	1.785	0.262	1.473	0.686	1.773	4.598	1.104	0.058	1.238	1.367	3.352	5.014	5.130	4.653	3.069	1.976	10.144	10.412	1.827	2.189	3.621	6.406	6.364	6.485	2.561	3.719	2.362	2.557	4.425	4.319	1.256	0.733	1.140	1.641	0.639	1.614	1.432	1.773	0.654	0.943	1.536	1.402
3091	chr16	24023079	24036691	+	0	NA	intron (NM_212535, intron 3 of 16)	intron (NM_212535, intron 3 of 16)	182585	NM_212535	5579	Hs.460355	NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PRKCB1|PRKCB2	protein kinase C beta	protein-coding	0.754	1.691	nan	0.124	2.051	0.790	0.293	0.066	0.094	0.070	0.080	0.088	1.586	0.024	0.102	0.311	0.150	0.063	0.094	0.116	0.169	nan	0.122	0.132	0.110	0.149	0.251	0.266	0.321	0.339	0.080	0.134	0.160	4.715	5.745	0.116	0.189	0.389	0.334	0.066	0.127	1.469	0.003	0.293	0.088	0.062	0.013	0.051	0.154
2166	chr12	118402856	118408877	+	0	NA	intron (NM_173598, intron 1 of 19)	intron (NM_173598, intron 1 of 19)	162	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding	nan	nan	1.514	2.802	2.584	1.627	2.630	0.124	0.054	2.204	1.162	5.581	6.719	0.850	0.085	2.152	3.289	2.020	2.761	nan	11.797	nan	2.335	3.737	3.938	0.120	0.214	8.193	nan	1.870	2.447	1.576	3.162	2.097	1.322	0.163	0.210	nan	2.063	3.160	7.629	0.360	3.251	2.630	5.581	0.924	1.505	0.931	0.021
5637	chr3	166794650	166819181	+	0	NA	Intergenic	Intergenic	190444	NR_135545	105374194		NR_135545		LOC105374194	inv3q26.1	uncharacterized LOC105374194	ncRNA	1.232	1.197	1.002	0.205	0.282	0.170	0.263	0.133	0.138	0.210	0.184	0.074	0.212	0.035	0.085	0.347	0.209	0.180	0.326	0.467	0.537	5.060	1.701	0.221	0.215	0.817	1.107	nan	0.350	nan	0.526	0.113	0.168	0.471	0.719	0.698	1.638	0.588	0.464	0.025	0.076	0.097	0.068	0.263	0.074	0.158	0.029	0.033	0.378
1378	chr11	34205907	34216300	+	0	NA	intron (NM_145804, intron 3 of 16)	AluJb|SINE|Alu	83992	NM_001144030	55226	Hs.577281	NM_024662	ENSG00000135372	NAT10	ALP|NET43	N-acetyltransferase 10	protein-coding	1.463	1.325	nan	0.321	0.357	0.156	0.716	0.499	0.108	0.181	0.149	0.106	1.858	0.062	0.088	0.684	0.604	0.358	0.652	0.384	0.547	0.689	0.310	0.625	0.629	3.071	4.092	0.195	0.353	0.772	1.057	0.591	0.678	0.810	0.675	0.202	nan	0.922	0.705	1.445	0.176	0.292	0.115	0.716	0.106	2.763	0.079	0.114	0.059
7420	chr7	105305042	105332842	+	0	NA	intron (NM_001318229, intron 1 of 9)	intron (NM_001318229, intron 1 of 9)	667	NM_138495	222255	Hs.745056	NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding	nan	1.270	1.778	0.632	0.650	0.280	0.454	0.635	0.093	0.616	0.377	0.397	1.429	0.106	0.149	0.854	0.800	0.744	0.858	1.124	0.892	2.139	0.420	0.317	0.326	0.623	1.148	1.449	1.603	0.727	0.699	0.821	1.298	0.692	0.877	0.807	nan	2.493	1.517	3.390	1.486	0.131	0.244	0.454	0.397	0.144	0.356	0.943	0.329
1054	chr10	17237294	17259875	+	0	NA	Intergenic	Intergenic	-4514	NM_001321006	1787	Hs.351665	NM_004412	ENSG00000107614	TRDMT1	DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1	tRNA aspartic acid methyltransferase 1	protein-coding	nan	1.005	1.144	0.553	0.484	0.259	0.171	3.121	0.435	0.273	0.117	0.531	0.566	0.580	0.106	1.505	1.641	2.679	5.201	0.967	0.961	1.193	0.585	0.705	0.688	3.015	3.702	1.027	1.565	0.640	0.577	0.488	0.667	0.068	0.081	0.642	0.583	0.465	0.369	0.414	0.211	0.013	0.145	0.171	0.531	0.022	0.234	0.351	0.263
5726	chr3	181952917	181979259	+	0	NA	Intergenic	MIR3|SINE|MIR	238062	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA	1.251	1.365	0.942	1.421	0.369	0.226	0.214	0.128	0.146	0.215	0.196	0.246	0.519	2.830	0.102	0.271	0.227	0.261	0.268	0.420	0.532	1.255	0.456	0.113	0.137	0.765	1.227	1.011	1.056	0.938	0.573	0.123	0.249	0.302	0.309	0.177	0.230	1.073	0.721	0.064	0.145	0.047	1.139	0.214	0.246	0.044	0.188	0.068	0.089
8354	chrUn_gl000216	9	15792	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA									nan	10.326	nan	2.945	nan	2.531	nan	1.723	10.154	1.524	4.824	1.350	6.357	0.947	4.435	3.306	1.200	1.146	1.407	2.881	4.921	1.158	0.836	1.619	1.452	nan	4.443	1.700	1.815	nan	0.955	1.169	2.024	0.802	1.746	1.452	2.788	1.021	1.543	0.552	2.951	1.281	0.740	nan	1.350	0.618	0.779	0.997	1.448
3797	chr18	47606809	47627378	+	0	NA	intron (NM_001080467, intron 1 of 39)	intron (NM_001080467, intron 1 of 39)	35840	NR_036204	100422865		NR_036204	ENSG00000283343	MIR4320	-	microRNA 4320	ncRNA	nan	1.052	1.113	0.345	0.351	0.201	0.408	0.072	0.055	0.104	0.061	0.211	2.030	0.059	0.080	0.447	0.351	0.323	0.490	0.590	0.651	0.250	0.165	0.236	0.211	0.304	0.444	1.137	1.736	0.373	0.160	0.227	0.367	2.814	5.283	0.190	nan	1.400	1.301	0.325	0.986	0.781	0.750	0.408	0.211	0.075	0.049	0.058	0.163
3616	chr17	79472847	79497038	+	0	NA	Intergenic	Intergenic	-5050	NM_001199954	71	Hs.514581	NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|BRWS2|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding	2.438	3.617	3.585	3.864	5.122	2.970	4.177	1.155	0.381	2.277	1.106	3.230	8.873	2.728	0.123	2.483	4.475	1.402	2.544	5.292	4.559	4.729	1.234	8.070	7.926	nan	1.546	6.314	5.543	2.979	2.490	1.994	5.397	3.398	1.827	0.784	1.683	nan	1.264	3.249	3.470	1.036	0.774	4.177	3.230	0.777	2.621	1.336	0.750
621	chr1	162624760	162648342	+	0	NA	intron (NM_006182, intron 2 of 17)	intron (NM_006182, intron 2 of 17)	34323	NM_001014796	4921	Hs.275757	NM_006182	ENSG00000162733	DDR2	MIG20a|NTRKR3|TKT|TYRO10	discoidin domain receptor tyrosine kinase 2	protein-coding	1.272	nan	1.267	0.101	0.280	0.120	0.296	1.138	0.184	0.173	0.189	0.192	0.342	0.038	0.127	0.436	0.286	0.392	0.481	0.497	nan	0.242	0.122	0.144	0.119	3.318	3.944	0.474	nan	0.480	0.319	0.342	0.453	0.091	0.127	0.518	1.241	0.599	0.577	0.046	0.173	0.005	0.329	0.296	0.192	0.053	0.082	0.097	0.322
6056	chr4	157842650	157904620	+	0	NA	intron (NR_036641, intron 1 of 6)	intron (NR_036641, intron 1 of 6)	18911	NM_016205	56034	Hs.570855	NM_016205	ENSG00000145431	PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding	nan	1.892	0.957	0.298	0.209	0.093	0.173	1.264	0.086	0.114	0.098	0.180	0.742	2.235	0.104	0.213	0.188	0.568	1.138	0.230	0.234	0.552	0.227	0.523	0.500	1.598	2.292	0.354	0.294	0.390	0.192	0.104	0.211	0.128	0.119	0.714	1.742	0.384	0.321	0.054	0.035	0.052	0.166	0.173	0.180	0.031	0.103	0.025	0.414
7537	chr7	150634587	150641839	+	0	NA	Intergenic	Intergenic	14704	NM_001204798	3757	Hs.647099	NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding	1.462	1.580	nan	0.717	0.547	0.283	0.296	0.134		0.556	0.424	0.765	2.198	0.075	0.103	0.982	1.662	0.330	0.273	2.945	2.359	1.165	0.473	0.499	0.506	0.463	0.630	2.212	1.843	0.580	0.526	0.817	0.915	0.628	0.459	0.855	2.440	1.902	1.226	4.039	7.701	0.052	0.057	0.296	0.765	0.616	0.281	0.539	1.110
7389	chr7	95800732	95820595	+	0	NA	intron (NR_027662, intron 10 of 16)	intron (NR_027662, intron 10 of 16)	38405	NR_030322	693176		NR_030322	ENSG00000208025	MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA	nan	0.731	nan	0.186	0.915	0.508	0.509	0.193	0.146	0.610	0.403	0.820	0.379	0.152	0.172	0.527	0.524	4.340	6.681	0.515	0.516	1.656	0.444	0.487	0.462	0.739	0.941	0.218	0.298	0.351	0.210	0.288	0.648	2.915	3.303	0.311	nan	2.792	1.399	0.084	0.228	1.344	0.132	0.509	0.820	0.063	0.056	0.155	0.137
2310	chr13	52333341	52346291	+	0	NA	Intergenic	Intergenic	38482	NM_001031719	79758	Hs.266728	NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding	0.802	nan	nan	0.433	0.193	0.086	0.115	0.351	0.100	0.085	0.083	0.617	0.728	0.041	0.076	0.545	0.722	0.200	0.359	0.626	0.680	nan	0.278	0.303	0.252	0.324	0.486	1.021	1.210	0.549	0.407	0.561	0.855	0.168	0.197	0.826	nan	0.341	0.263	0.654	3.985	0.029	0.183	0.115	0.617	0.075	0.086	0.352	0.295
7579	chr8	3806403	3858200	+	0	NA	intron (NM_033225, intron 5 of 69)	intron (NM_033225, intron 5 of 69)	1020027	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding	0.453	0.575	0.424	0.048	0.634	0.317	0.333	0.070	0.072	8.043	4.393	0.083	0.079	0.031	0.107	0.344	0.213	0.352	0.389	0.714	0.721	0.155	0.097	0.190	0.180	0.083	0.132	0.396	0.386	nan	0.253	0.184	0.283	0.291	0.331	0.154	0.198	0.854	0.624	0.191	0.211	0.033	0.020	0.333	0.083	0.008	0.112	0.111	0.038
2495	chr14	24454041	24463522	+	0	NA	intron (NM_198083, intron 1 of 7)	intron (NM_198083, intron 1 of 7)	754	NM_198083	317749	Hs.743442	NM_198083	ENSG00000187630	DHRS4L2	SDR25C3	dehydrogenase/reductase 4 like 2	protein-coding	nan	1.359	3.107	1.044	0.647	0.203	0.419	0.278	0.208	0.134	0.097	0.833	0.796	0.137	0.120	0.303	0.359	0.448	0.632	0.497	0.554	0.633	0.267	1.150	1.229	6.481	7.615	2.252	nan	1.545	1.758	0.352	0.556	0.538	0.502	0.410	0.824	1.138	0.681	0.477	0.882	0.252	0.387	0.419	0.833	0.350	1.872	0.344	0.169
3052	chr16	12422224	12436320	+	0	NA	intron (NM_032167, intron 15 of 20)	AluJr|SINE|Alu	358681	NM_032167	92017	Hs.458401	NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding	0.774	0.559	nan	0.232	0.463	0.263	0.301	0.100	0.068	0.133	0.148	0.299	1.059	0.054	0.059	0.421	0.370	0.097	0.133	0.488	0.497	1.837	0.611	0.570	0.671	0.447	0.906	0.394	0.503	nan	0.293	0.526	0.794	0.175	0.330	0.332	0.503	2.710	1.204	0.582	0.233	0.014	0.129	0.301	0.299	0.097	0.065	0.317	0.132
2438	chr13	109981191	109988595	+	0	NA	Intergenic	Intergenic	-68150	NR_126361	104326054	Hs.569298	NR_126361	ENSG00000229792	LINC00399	TCONS_00021596	long intergenic non-protein coding RNA 399	ncRNA	0.934	nan	1.877	0.991	0.691	0.353	0.121	0.111	0.065	0.295	0.123	1.600	0.666	0.187	0.122	1.314	1.507	0.496	0.846	2.743	2.068	0.705	0.645	0.108	0.074	0.040	0.079	3.009	4.622	1.852	2.125	1.166	1.751	0.111	0.109	0.457	0.581	0.619	0.668	0.077	1.844	0.012	0.556	0.121	1.600	0.130	7.733	1.822	0.262
3246	chr17	3856632	3889702	+	0	NA	Intergenic	AluSx|SINE|Alu	-5409	NM_174954	489	Hs.513870	NM_005173	ENSG00000074370	ATP2A3	SERCA3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein-coding	1.057	1.717	1.098	1.449	3.390	1.771	0.387	0.054	0.083	1.313	0.664	0.778	3.011	0.187	0.083	1.761	2.849	0.295	0.322	0.506	0.501	4.559	1.258	1.860	1.939	0.347	0.545	3.100	3.396	0.401	0.244	0.821	1.160	1.398	1.233	0.395	0.593	2.016	0.887	0.749	1.687	0.336	0.063	0.387	0.778	0.324	1.424	0.599	0.224
4179	chr2	2878225	2883544	+	0	NA	Intergenic	Intergenic	248914	NR_110228	101927554	Hs.638446	NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA	0.531	0.513	0.734	0.109	0.222	0.120	0.335	0.075	0.030	0.238	0.229	0.157	0.509	0.072	0.074	0.554	0.592	12.318	4.253	0.598	0.552	0.621	0.270	0.332	0.272	0.332	0.738	0.626	0.767	0.415	0.280	0.357	0.328	0.120	0.083	0.181	0.146	0.669	0.679	0.081	0.284	0.018	0.059	0.335	0.157	0.129	0.889	0.037	0.046
5899	chr4	53924757	53931227	+	0	NA	intron (NM_152540, intron 5 of 8)	intron (NM_152540, intron 5 of 8)	199497	NM_023940	65997	Hs.8035	NM_023940	ENSG00000128045	RASL11B	-	RAS like family 11 member B	protein-coding	nan	0.540	0.540	0.190	0.410	0.223	0.184	0.127	0.100	0.192	0.117	0.184	0.205	0.034	0.076	1.865	1.038	8.401	6.752	0.229	0.371	0.825	0.413	0.383	0.357	2.074	2.208	0.437	0.452	1.216	1.054	1.195	1.706	0.105	0.169	0.206	0.497	1.339	1.134	0.152	0.069	0.074	0.012	0.184	0.184	0.040	0.086	0.954	0.144
5481	chr3	115102727	115124352	+	0	NA	Intergenic	Intergenic	-228612	NM_002045	2596	Hs.134974	NM_002045	ENSG00000172020	GAP43	B-50|PP46	growth associated protein 43	protein-coding	1.159	nan	0.823	0.123	0.374	0.230	0.525	0.129	0.097	0.079	0.084	0.105	0.268	0.076	0.095	0.356	0.283	0.248	0.345	0.335	nan	0.504	0.285	0.230	0.273	nan	0.752	0.228	0.236	0.757	0.311	0.166	0.298	0.148	0.317	1.772	5.248	0.505	0.594	0.075	0.095	0.044	0.414	0.525	0.105	0.166	0.080	0.206	1.469
8281	chr9	130247219	130268890	+	0	NA	intron (NM_001005373, intron 22 of 25)	L1MC|LINE|L1	43520	NM_001005374	90678	Hs.495188	NM_138361	ENSG00000148356	LRSAM1	CMT2P|RIFLE|TAL	leucine rich repeat and sterile alpha motif containing 1	protein-coding	nan	0.653	4.536	0.345	0.364	0.222	0.282	0.121	0.097	0.250	0.150	0.174	0.536	0.065	0.058	0.283	0.571	0.320	0.435	1.107	1.139	nan	0.171	0.488	0.537	0.315	0.502	1.051	1.526	1.531	1.693	0.232	0.223	0.237	0.259	0.376	0.597	1.028	0.613	0.129	0.094	0.043	0.150	0.282	0.174	0.922	0.122	0.023	0.120
7267	chr7	44185917	44204197	+	0	NA	intron (NM_000162, intron 1 of 9)	MIRb|SINE|MIR	3830	NM_033507	2645	Hs.1270	NM_000162	ENSG00000106633	GCK	FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2	glucokinase	protein-coding	3.092	1.248	nan	0.309	0.182	0.079	0.385	0.164	0.088	0.161	0.129	0.170	0.358	0.110	0.136	0.642	0.577	0.239	0.390	0.542	0.527	0.837	0.234	0.473	0.414	0.346	0.702	0.762	1.096	3.291	4.005	0.377	0.436	0.463	0.326	1.649	3.027	1.194	0.612	0.534	0.219	0.073	1.595	0.385	0.170	0.571	0.273	0.107	1.512
2050	chr12	81771640	81780434	+	0	NA	intron (NM_003625, intron 9 of 32)	L2a|LINE|L2	-12844	NM_001220479	8499	Hs.506216	NM_003625	ENSG00000139220	PPFIA2	-	PTPRF interacting protein alpha 2	protein-coding	0.778	0.817	0.801	0.942	0.239	0.237	0.058	0.200	0.147	0.276	0.286	0.795	1.776	0.024	0.111	0.328	0.118	0.179	0.332	1.106	1.473	5.678	2.323	0.216	0.315	0.803	0.920	10.856	12.988	0.356	0.175	0.126	0.212	0.726	0.661	0.367	0.913	0.817	0.614	0.025	0.180	0.249	0.315	0.058	0.795	0.022	0.046	0.124	0.085
3815	chr18	51771582	51782706	+	0	NA	Intergenic	AluSc8|SINE|Alu	-18705	NM_007195	11201	Hs.438533	NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB	DNA polymerase iota	protein-coding	nan	1.789	1.813	1.135	1.775	0.834	2.377	0.120	0.087	0.328	0.240	3.828	2.065	0.039	0.104	0.588	0.654	0.476	1.496	4.794	5.820	7.023	2.821	0.333	0.408	0.272	0.368	2.447	2.918	1.073	0.917	0.543	0.857	4.955	5.514	0.450	0.540	nan	2.436	2.075	0.695	1.335	0.634	2.377	3.828	0.578	0.255	0.773	0.146
1311	chr11	12285511	12317480	+	0	NA	Intergenic	Intergenic	-6952	NM_032867	84953	Hs.128196	NM_032867	ENSG00000133808	MICALCL	Ebitein1	MICAL C-terminal like	protein-coding	0.939	nan	1.868	1.427	0.840	0.381	0.550	0.657	0.182	0.328	0.170	3.327	3.623	0.051	0.069	nan	0.757	0.525	0.871	1.937	2.143	3.959	0.960	1.400	1.540	0.968	nan	2.436	1.727	0.989	0.988	0.632	0.951	0.362	0.445	0.297	0.478	2.637	nan	4.992	1.044	0.092	0.305	0.550	3.327	0.164	0.232	0.278	0.151
1787	chr12	6176836	6204354	+	0	NA	intron (NM_000552, intron 6 of 51)	AluSc5|SINE|Alu	43246	NM_000552	7450	Hs.440848	NM_000552	ENSG00000110799	VWF	F8VWF|VWD	von Willebrand factor	protein-coding	0.483	nan	nan	1.270	0.444	0.152	0.549	0.201	0.083	0.120	0.120	1.652	2.173	0.036	0.101	1.607	2.112	1.960	1.869	nan	1.407	1.708	0.436	0.484	0.593	0.907	1.164	0.991	1.093	0.305	0.156	1.575	2.194	0.203	0.152	0.211	nan	0.165	0.205	2.213	2.507	0.010	0.087	0.549	1.652	0.431	0.022	2.897	0.085
6062	chr4	160015812	160164996	+	0	NA	Intergenic	Intergenic	-40358	NR_037459	100500881		NR_037459	ENSG00000264105	MIR3688-1	MIR3688|mir-3688-1	microRNA 3688-1	ncRNA	nan	nan	nan	0.489	0.462	0.227	0.159	0.373	0.117	0.193	0.114	0.347	0.548	2.699	0.122	0.281	0.248	0.454	0.716	0.407	0.467	0.673	0.357	0.312	0.307	0.683	0.929	0.669	0.787	0.477	0.299	0.223	0.403	0.177	0.255	0.292	0.497	0.357	0.288	0.058	0.122	0.045	0.371	0.159	0.347	0.027	0.092	0.121	0.103
8229	chr9	106849520	106862150	+	0	NA	promoter-TSS (NM_001042551)	promoter-TSS (NM_001042551)	-706	NM_001265602	10592	Hs.119023	NM_006444	ENSG00000136824	SMC2	CAP-E|CAPE|SMC-2|SMC2L1	structural maintenance of chromosomes 2	protein-coding	2.439	2.062	1.978	8.012	5.293	2.565	1.453	0.980	0.140	3.159	1.756	5.465	8.445	1.132	0.110	1.770	1.928	3.914	6.034	5.106	5.240	5.538	3.997	3.946	4.190	1.848	2.290	10.824	20.253	5.075	4.729	1.191	1.983	5.882	4.766	2.204	2.271	nan	1.978	1.089	1.712	1.330	0.915	1.453	5.465	0.310	1.633	0.729	0.948
936	chr1	235322220	235334448	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	-3403	NR_027762	23029	Hs.535224	NM_015014	ENSG00000188739	RBM34	-	RNA binding motif protein 34	protein-coding	2.082	2.024	1.799	1.334	1.216	0.540	1.080	0.989	0.153	0.704	0.527	1.117	2.509	1.120	0.175	1.895	1.963	5.172	10.263	2.113	2.190	nan	0.845	3.014	3.216	1.158	1.732	nan	2.605	1.453	0.965	0.604	0.939	1.055	1.529	1.291	1.822	nan	0.706	0.705	0.425	0.202	0.357	1.080	1.117	0.135	0.688	0.211	0.363
5736	chr3	182508821	182513537	+	0	NA	promoter-TSS (NM_014616)	promoter-TSS (NM_014616)	-112	NM_014616	23200	Hs.478429	NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding	3.354	3.109	3.161	2.943	2.920	1.732	1.532	3.347	0.271	2.037	0.959	3.586	7.298	1.856	0.051	2.720	3.501	3.872	6.528	5.097	3.924	14.463	4.424	5.726	5.707	2.478	3.285	4.366	6.508	6.460	7.552	1.360	3.321	2.213	1.791	5.641	5.872	2.331	1.341	0.742	1.828	0.181	2.778	1.532	3.586	0.705	1.758	0.558	2.412
7417	chr7	104597577	104626802	+	0	NA	Intergenic	Intergenic	19423	NR_039981	100216546	Hs.369356	NR_039981		LINC01004	-	long intergenic non-protein coding RNA 1004	ncRNA	nan	1.057	2.066	0.812	0.911	0.514	0.717	1.966	0.232	0.420	0.382	0.549	1.526	1.224	0.149	1.440	1.187	1.812	2.627	1.384	1.403	2.074	0.766	1.642	1.720	1.587	2.120	1.006	1.465	1.359	0.994	1.259	1.702	1.012	1.419	1.606	nan	1.074	0.826	0.871	0.565	0.209	0.460	0.717	0.549	0.249	0.410	0.366	0.796
5110	chr21	36507770	36526586	+	0	NA	Intergenic	Intergenic	-95583	NM_001754	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding	0.618	0.595	0.784	0.114	0.314	0.157	0.334	0.138	0.104	0.025	0.055	0.242	0.539	0.006	0.083	0.731	1.026	4.580	13.135	0.387	0.523	0.399	0.100	0.301	0.348	0.176	0.272	0.441	0.426	0.402	0.158	0.227	0.394	0.077	0.094	0.168	0.220	nan	0.681	0.075	0.189	0.010	0.025	0.334	0.242	0.026	0.027	0.079	0.026
4510	chr2	136962441	136968885	+	0	NA	Intergenic	Intergenic	-89938	NM_003467	7852	Hs.593413	NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS	C-X-C motif chemokine receptor 4	protein-coding	nan	0.490	nan	0.177	0.278	0.173	0.262	0.057	0.095	0.219	0.172	0.279	1.800	0.051	0.121	0.544	0.705	0.340	0.270	0.479	0.611	4.161	0.807	0.122	0.149	0.622	0.837	3.020	nan	0.455	0.222	0.249	0.789	0.084	0.157	0.197	0.586	1.230	0.598	8.904	0.330	0.074	0.023	0.262	0.279	0.135	0.267	0.599	0.133
701	chr1	182268123	182308883	+	0	NA	Intergenic	AluJr|SINE|Alu	-5307	NR_104175	400799	Hs.634884	NR_104175	ENSG00000228918	LINC01344	GS1-122H1.2	long intergenic non-protein coding RNA 1344	ncRNA	nan	nan	1.976	0.388	0.310	0.165	0.329	0.133	0.146	0.184	0.151	0.118	1.200	0.035	0.090	0.693	0.780	2.160	3.873	0.564	nan	0.185	0.096	nan	1.110	1.351	1.805	0.550	0.456	1.210	1.272	1.250	1.479	0.377	0.387	1.417	nan	0.737	0.625	0.089	0.541	0.078	0.400	0.329	0.118	0.187	0.047	0.567	1.738
3710	chr18	29950797	29972051	+	0	NA	intron (NM_022751, intron 2 of 5)	intron (NM_022751, intron 2 of 5)	89023	NM_022751	64762	Hs.444314	NM_022751	ENSG00000141441	GAREM1	C18orf11|FAM59A|GAREM|Gm944	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	1.075	1.366	1.364	2.089	1.186	0.574	0.701	0.176	0.091	0.470	0.226	0.618	2.268	0.026	0.048	0.443	0.255	0.478	nan	0.709	0.718	2.749	0.658	0.233	0.222	0.428	0.649	4.569	4.172	0.434	0.294	0.086	0.199	2.290	3.863	0.424	0.816	1.648	1.414	0.218	0.367	0.421	0.090	0.701	0.618	0.165	1.372	0.057	0.208
6251	chr5	49961412	49966691	+	0	NA	intron (NM_001331028, intron 2 of 25)	intron (NM_001331028, intron 2 of 25)	671	NM_001331028	79668	Hs.369581	NM_024615	ENSG00000151883	PARP8	ARTD16|pART16	poly(ADP-ribose) polymerase family member 8	protein-coding	2.287	7.535	2.105	0.603	0.416	0.397	2.671	0.723	0.245	2.043	0.864	1.956	14.292	7.300	0.188	1.594	2.459	6.925	9.797	6.126	5.196	10.656	4.772	7.992	7.163	0.165	0.356	1.816	3.851	3.188	4.843	8.896	13.349	0.733	0.724	0.385	0.454	2.395	1.667	4.440	10.413	0.484	1.116	2.671	1.956		3.386	6.274	0.583
3630	chr17_gl000205_random	80490	91169	+	0	NA	Intergenic	Intergenic	-30794	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo	nan	5.038	9.661	13.218	9.818	5.320	5.598	1.293	0.431	4.717	2.465	7.918	15.784	7.325	0.396	11.138	12.258	nan	nan	9.117	6.632	12.021	4.720	12.482	13.602	10.039	12.448	3.905	3.484	15.144	16.648	5.511	7.092	8.122	6.298	9.834	11.662	8.435	6.364	6.386	8.044	0.996	5.624	5.598	7.918	3.141	5.717	5.843	5.407
7176	chr7	15364834	15379025	+	0	NA	intron (NM_001004320, intron 12 of 12)	intron (NM_001004320, intron 12 of 12)	229711	NM_001004320	392636	Hs.670634	NM_001004320	ENSG00000187546	AGMO	TMEM195	alkylglycerol monooxygenase	protein-coding	nan	1.125	nan	0.182	0.977	0.573	3.265	0.121	0.057	3.391	1.718	0.768	0.462	0.069	0.160	nan	0.374	0.251	0.323	0.696	1.290	10.670	8.465	0.446	0.376	0.563	0.820	1.658	1.154	0.445	0.245	0.102	0.186	0.561	0.409	0.259	0.427	4.228	1.835	0.027	0.632	0.152	0.078	3.265	0.768	0.118	0.365	0.021	0.053
2708	chr14	80086470	80161913	+	0	NA	intron (NM_001105250, intron 2 of 6)	intron (NM_001105250, intron 2 of 6)	378509	NR_073546	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding	nan	0.701	0.880	0.060	0.266	0.132	0.330	0.162	0.098	0.059	0.090	0.033	0.595	0.042	0.112	0.608	0.351	0.290	0.565	0.466	0.574	0.088	0.052	7.170	7.568	0.954	1.478	0.301	0.324	0.595	0.277	0.212	0.355	0.375	0.467	0.237	0.365	0.791	0.825	1.052	0.344	0.104	0.131	0.330	0.033	0.161	0.036	0.110	0.077
1650	chr11	113126210	113147209	+	0	NA	TTS (NM_001242608)	TTS (NM_001242608)	7914	NR_034101	100288346	Hs.661826	NR_034101	ENSG00000227487	NCAM1-AS1	-	NCAM1 antisense RNA1	ncRNA	0.724	0.895	0.608	0.223	0.315	0.154	0.280	0.065	0.038	0.270	0.124	0.114	0.441	0.036	0.088	3.700	nan	0.386	0.414	0.620	0.657	1.076	0.294	0.670	0.619	0.400	nan	1.254	1.301	0.444	0.363	0.641	0.981	0.412	0.717	0.293	0.754	0.748	0.538	0.111	0.151	0.173	0.241	0.280	0.114	0.217	0.328	0.197	0.230
6999	chr6	138501753	138512235	+	0	NA	intron (NM_020340, intron 2 of 33)	MIRb|SINE|MIR	23941	NM_020340	57221	Hs.194408	NM_020340	ENSG00000112379	ARFGEF3	A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1	ARFGEF family member 3	protein-coding	1.429	1.069	1.564	3.489	0.531	0.215	1.136	0.113	0.093	1.292	0.561	0.546	8.574	0.063	0.088	0.276	0.338	0.315	0.454	1.477	1.482	nan	2.760	0.269	0.313	0.499	0.694	3.536	2.820	0.884	0.445	0.356	0.882	3.065	4.871	0.130	nan	1.850	1.084	4.304	1.538	0.803	0.068	1.136	0.546	0.370	1.416	0.320	0.094
2539	chr14	33160077	33165958	+	0	NA	intron (NM_004274, intron 8 of 13)	LTR81|LTR|Gypsy	-245442	NM_001164749	64067	Hs.657892	NM_022123	ENSG00000151322	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding	1.222	1.726	0.832	2.404	0.334	0.217	0.173	1.053	0.369	0.319	0.143	1.140	0.621	0.682	0.162	0.291	0.171	0.222	0.227	0.651	0.871	3.630	1.762	0.237	0.256	0.410	0.729	3.011	3.691	0.844	0.604	0.136	0.308	0.124	0.215	0.264	0.555	1.831	1.255	10.029	0.409	0.016	0.067	0.173	1.140	0.050	0.105	0.017	0.087
3639	chr18	2654321	2657778	+	0	NA	promoter-TSS (NR_033754)	promoter-TSS (NR_033754)	163	NM_015295	23347	Hs.8118	NM_015295	ENSG00000101596	SMCHD1	-	structural maintenance of chromosomes flexible hinge domain containing 1	protein-coding	7.997	6.095	5.629	8.431	5.663	2.957	2.516	4.138	0.325	3.501	1.250	11.993	nan	5.977	0.166	8.237	8.209	7.897	11.816	15.178	12.122	14.089	9.528	19.654	18.038	3.977	4.969	8.407	14.669	nan	8.549	3.560	6.219	10.396	10.915	9.040	nan	5.187	2.690	5.406	5.007	2.186	4.541	2.516	11.993	1.865	2.949	1.364	1.735
2779	chr14	103795796	103803456	+	0	NA	promoter-TSS (NM_001969)	promoter-TSS (NM_001969)	-713	NM_001969	1983	Hs.433702	NM_001969	ENSG00000100664	EIF5	EIF-5|EIF-5A	eukaryotic translation initiation factor 5	protein-coding	6.950	2.972	4.077	6.631	4.049	1.992	6.064	3.142	0.420	2.067	1.142	5.114	7.611	4.376	0.105	4.209	4.614	6.418	8.269	9.118	9.251	8.947	5.852	9.477	9.709	3.119	4.170	7.592	11.217	8.370	8.350	5.321	10.025	4.239	4.693	4.275	3.420	3.590	1.853	4.090	4.811	0.971	3.026	6.064	5.114	1.274	1.521	3.662	1.167
2139	chr12	110144432	110177122	+	0	NA	intron (NM_032829, intron 1 of 2)	intron (NM_032829, intron 1 of 2)	8590	NM_032829	84915	Hs.661785	NM_032829	ENSG00000139438	FAM222A	C12orf34	family with sequence similarity 222 member A	protein-coding	nan	nan	1.281	0.474	1.295	0.632	1.322	0.154	0.072	0.699	0.501	0.494	1.283	0.206	0.098	1.600	2.005	0.526	0.773	nan	nan	nan	0.513	1.273	1.294	0.229	0.392	nan	nan	1.806	1.387	2.270	3.393	0.681	0.825	0.998	1.726	nan	0.863	0.185	0.833	0.185	1.340	1.322	0.494	0.586	0.639	2.836	0.738
5573	chr3	139786989	139835023	+	0	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	156979	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding	1.267	nan	nan	0.111	0.590	0.308	0.390	0.260	0.154	0.166	0.225	0.153	0.279	0.014	0.066	0.478	0.466	1.474	0.837	0.406	0.479	3.367	1.218	0.230	0.246	2.307	3.271	0.225	0.236	nan	1.707	0.287	0.476	0.270	0.240	0.455	0.979	0.489	0.519	0.222	0.078	0.065	0.141	0.390	0.153	0.542	0.091	0.134	0.199
768	chr1	199880768	199885514	+	0	NA	Intergenic	Intergenic	-113589	NM_003822	2494	Hs.33446	NM_003822	ENSG00000116833	NR5A2	B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2	nuclear receptor subfamily 5 group A member 2	protein-coding	0.620	nan	0.948	0.220	0.312	0.169	0.239	0.140	0.171	0.068	0.219	0.151	0.284	0.023	0.104	0.397	0.452	11.436	3.283	0.357	0.570	0.141	0.065	1.027	1.094	0.280	nan	0.425	0.375	0.240	0.104	0.151	0.278	0.106	0.138	0.222	0.296	0.271	0.354	0.047	0.052	0.020	0.069	0.239	0.151	0.081	0.063	0.085	
7924	chr8	127831047	127896245	+	0	NA	Intergenic	Intergenic	-161753	NR_045262	100750225	Hs.571530	NR_045262	ENSG00000253438	PCAT1	PCA1|PCAT-1	prostate cancer associated transcript 1 (non-protein coding)	ncRNA	nan	nan	nan	0.239	0.484	0.258	0.082	0.552	0.125	0.067	0.081	0.411	nan	0.429	0.082	0.330	0.208	8.781	8.833	0.680	0.704	0.816	0.253	nan	nan	7.755	11.269	0.302	0.334	0.416	0.211	0.122	0.202	0.089	0.126	0.268	0.554	0.523	0.498	0.052	0.138	0.022	0.074	0.082	0.411	1.073	0.101	0.039	0.095
3877	chr18	64864482	64869148	+	0	NA	Intergenic	Intergenic	117994	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA	0.730	0.866	0.666	0.226	0.349	0.293	0.419	0.081	0.055	0.337	0.670	0.079	0.610	0.046	0.074	0.362	0.374	0.366	0.529	0.771	0.764	7.069	2.859	0.615	nan	1.841	nan	4.199	2.005	0.831	0.392	0.153	0.341	4.622	3.229	0.321	0.503	7.578	2.628	0.095	0.075	1.074	0.119	0.419	0.079		0.367	0.021	0.027
1636	chr11	111780415	111811996	+	0	NA	intron (NR_037651, intron 3 of 4)	intron (NR_037651, intron 3 of 4)	-1663	NM_001278542	85458	Hs.655626	NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding	0.968	1.476	0.926	0.872	2.111	1.118	0.732	0.791	0.115	0.515	0.363	3.168	2.089	0.552	0.124	5.634	nan	1.333	3.022	2.373	2.455	1.909	0.559	1.236	1.293	1.591	nan	2.332	2.583	0.845	0.699	1.528	2.422	1.497	2.204	0.860	1.586	1.333	0.904	1.031	1.058	0.252	0.851	0.732	3.168	0.292	0.761	1.375	0.509
2491	chr14	23820866	23837151	+	0	NA	exon (NM_005864, exon 4 of 6)	exon (NM_005864, exon 4 of 6)	5834	NM_001277174	10278	Hs.24587	NM_005864	ENSG00000100842	EFS	CAS3|CASS3|EFS1|EFS2|HEFS|SIN	embryonal Fyn-associated substrate	protein-coding	nan	3.505	4.302	0.269	1.422	0.720	2.361	0.139	0.119	0.048	0.147	0.059	0.740	0.278	0.091	0.163	0.198	2.916	3.871	4.170	3.635	0.574	0.160	0.217	0.254	1.976	2.698	0.176	nan	4.399	4.577	0.568	0.698	0.164	0.186	6.075	8.199	0.442	0.400	4.087	0.049	0.029	3.006	2.361	0.059	0.464	0.063	0.212	5.598
7730	chr8	66751210	66755693	+	0	NA	intron (NM_001242318, intron 1 of 12)	intron (NM_001242318, intron 1 of 12)	518	NM_001242318	5150	Hs.527119	NM_002603	ENSG00000205268	PDE7A	HCP1|PDE7	phosphodiesterase 7A	protein-coding	13.404	4.755	6.520	8.626	5.827	2.959	5.100	4.245	0.537	3.427	1.534	6.512	15.807	3.003	0.104	7.616	8.268	10.201	12.818	20.952	15.478	13.091	6.572	6.573	6.052	5.539	nan	5.951	9.448	nan	9.967	5.708	10.260	10.237	8.366	8.011	6.291	6.116	3.394	6.634	7.177	1.746	4.874	5.100	6.512	1.286	5.652	2.765	2.498
6971	chr6	134266551	134279819	+	0	NA	promoter-TSS (NM_001253676)	promoter-TSS (NM_001253676)	-123	NM_001253676	9519	Hs.486507	NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding	1.846	1.209	4.567	1.290	1.043	0.540	1.667	0.875	0.157	0.936	0.541	1.155	3.574	2.035	0.141	1.586	1.585	1.321	1.716	3.340	2.679	nan	1.628	1.417	1.531	2.053	2.854	0.901	0.937	4.679	4.689	1.135	1.535	5.206	5.513	1.306	nan	1.894	0.791	0.350	1.567	1.522	0.577	1.667	1.155	0.701	1.405	0.396	0.577
4976	chr20	46589529	46628488	+	0	NA	non-coding (NR_110027, exon 3 of 3)	non-coding (NR_110027, exon 3 of 3)	-2962	NR_109942	101060004	Hs.129970	NR_109942		LINC01523	-	long intergenic non-protein coding RNA 1523	ncRNA	nan	nan	0.544	0.050	0.267	0.155	1.725	0.281	0.133	0.076	0.064	1.196	7.512	0.044	0.102	0.560	0.373	0.432	0.963	2.511	2.738	nan	0.091	0.161	0.138	0.691	1.068	0.149	0.166	nan	0.461	0.369	0.489	0.105	0.172	0.515	0.841	0.163	0.209	0.992	0.561	0.051	0.216	1.725	1.196	0.309	0.029	0.084	0.144
338	chr1	61541519	61559863	+	0	NA	intron (NM_001134673, intron 1 of 10)	intron (NM_001134673, intron 1 of 10)	2711	NM_001134673	4774	Hs.740757	NM_005595	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding	3.680	2.990	nan	0.922	1.698	0.844	0.662	2.614	0.281	1.483	0.825	0.862	5.360	1.699	0.172	0.935	1.631	2.228	3.234	2.070	1.860	0.206	0.142	0.860	0.908	nan	nan	2.619	nan	2.420	2.635	0.321	0.945	2.409	2.293	0.879	1.689	3.397	1.787	2.296	1.543	0.541	1.511	0.662	0.862	0.752	1.668	0.602	0.466
5478	chr3	114798441	114821467	+	0	NA	intron (NM_015642, intron 1 of 9)	intron (NM_015642, intron 1 of 9)	-9316	NR_046877	100874131		NR_046877	ENSG00000242767	ZBTB20-AS4	-	ZBTB20 antisense RNA 4	ncRNA	1.325	nan	1.287	0.318	1.945	1.086	0.353	0.580	0.151	0.857	0.618	1.339	0.419	0.160	0.102	0.583	0.788	1.456	2.169	1.316	nan	4.014	1.487	0.405	0.394	nan	7.302	0.628	0.760	1.337	0.647	0.392	0.482	1.104	1.134	0.577	1.224	1.445	0.846	0.824	0.111	0.190	0.031	0.353	1.339	0.053	0.374	0.193	0.445
3105	chr16	30062844	30088856	+	0	NA	promoter-TSS (NM_001127617)	promoter-TSS (NM_001127617)	32	NM_001127617	226	Hs.513490	NM_000034	ENSG00000149925	ALDOA	ALDA|GSD12|HEL-S-87p	aldolase, fructose-bisphosphate A	protein-coding	2.821	2.126	2.037	3.544	3.599	1.930	2.397	1.073	0.304	0.931	0.558	2.562	8.183	1.524	0.098	2.033	2.567	2.232	3.449	3.317	3.010	4.967	2.362	4.002	3.971	2.095	2.815	5.170	7.092	3.655	3.865	1.680	2.723	3.244	3.591	2.045	3.358	1.855	1.012	3.864	1.718	0.891	1.343	2.397	2.562	0.867	2.590	1.180	1.641
576	chr1	155512840	155535799	+	0	NA	intron (NM_018489, intron 1 of 27)	AluSp|SINE|Alu	-7453	NR_027023	645676	Hs.568693	NR_027023		ASH1L-AS1	-	ASH1L antisense RNA 1	ncRNA	nan	nan	2.056	1.263	1.573	0.763	1.637	1.186	0.357	1.378	0.853	1.671	4.762	1.252	0.164	2.987	3.322	3.379	4.218	3.433	nan	3.680	1.986	3.015	3.085	2.019	2.608	2.451	4.484	2.428	2.321	3.935	6.861	1.557	2.067	2.611	3.033	1.287	0.751	1.128	2.960	0.394	0.984	1.637	1.671	0.410	1.371	2.821	0.791
761	chr1	198125328	198129921	+	0	NA	intron (NM_133494, intron 1 of 9)	intron (NM_133494, intron 1 of 9)	1516	NM_133494	140609	Hs.24119	NM_133494	ENSG00000151414	NEK7	-	NIMA related kinase 7	protein-coding	5.222	nan	4.950	3.835	4.384	2.789	4.118	4.333	0.384	2.572	1.503	3.255	10.593	6.455	0.153	2.978	4.834	10.985	15.562	8.604	6.806	6.015	2.184	11.825	12.352	5.137	6.270	5.959	7.816	5.289	4.936	0.964	2.734	5.592	4.503	5.109	7.784	2.509	1.475	0.049	2.400	1.109	2.771	4.118	3.255	0.719	2.637	0.841	3.007
1775	chr12	3789671	3797077	+	0	NA	intron (NM_032680, intron 4 of 10)	intron (NM_032680, intron 4 of 10)	68992	NM_001144958	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding	1.081	nan	nan	4.010	0.989	0.393	0.486	0.092	0.134	0.478	0.191	2.474	1.147	0.014	0.143	0.252	0.264	0.087	0.138	nan	1.086	5.837	1.134	0.336	0.312	0.599	0.873	0.874	1.001	0.439	0.194	0.356	0.329	1.944	2.853	0.893	nan	1.363	0.937	0.197	0.225	0.155	10.111	0.486	2.474	1.206	0.041	0.054	0.700
1415	chr11	47784481	47791202	+	0	NA	intron (NM_015308, intron 1 of 16)	AluJb|SINE|Alu	1189	NM_001318339	23360	Hs.6834	NM_015308	ENSG00000109920	FNBP4	FBP30	formin binding protein 4	protein-coding	nan	3.978	3.772	7.165	6.536	3.353	5.999	2.771	0.670	3.584	1.970	6.269	10.386	4.838	0.209	11.059	8.549	7.970	12.665	10.995	10.742	8.409	5.711	14.935	15.653	5.512	6.837	8.755	13.072	8.024	9.278	6.609	9.330	7.656	8.981	6.155	5.597	3.704	2.130	5.157	5.894	1.627	2.112	5.999	6.269	1.805	2.647	3.739	2.618
2334	chr13	70483862	70498509	+	0	NA	intron (NM_020866, intron 4 of 10)	(TATATG)n|Simple_repeat|Simple_repeat	-190160	NR_002717	6315	Hs.676453	NR_002717		ATXN8OS	KLHL1AS|NCRNA00003|SCA8	ATXN8 opposite strand (non-protein coding)	ncRNA	nan	1.006	0.830	0.036	0.294	0.219	1.286	0.060	0.065	0.096	0.104	0.122	0.379	0.037	0.103	0.552	0.431	0.187	0.258	0.643	0.877	nan	1.494	0.138	0.131	0.160	0.217	0.212	0.165	nan	0.347	0.120	0.208	0.459	0.355	1.254	nan	0.213	0.147	0.572	0.208	0.105	0.342	1.286	0.122	0.086	0.042	0.040	0.172
1078	chr10	26088268	26132444	+	0	NA	Intergenic	Intergenic	112283	NR_120650	101929073	Hs.409816	NR_120650	ENSG00000226304	LOC101929073	-	uncharacterized LOC101929073	ncRNA	0.570	0.836	0.914	0.094	0.972	0.458	0.269	0.179	0.143	0.160	0.158	0.027	0.152	0.047	0.089	0.454	0.332	0.208	0.276	0.190	0.252	0.931	0.290	0.124	0.131	1.554	1.803	0.102	0.112	0.360	0.228	0.113	0.215	1.732	2.958	0.572	1.342	0.795	0.455	0.021	0.048	0.626	0.033	0.269	0.027	0.004	0.035	0.070	0.211
2530	chr14	30907338	30924470	+	0	NA	Intergenic	L1PA5|LINE|L1	-112425	NM_001308097	55632	Hs.509008	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding	1.304	0.891	0.797	0.184	0.765	0.327	0.351	0.699	0.140	0.943	0.517	0.453	0.419	0.032	0.148	0.151	0.222	0.171	0.193	0.516	0.767	3.840	2.992	0.452	0.417	2.455	3.263	0.407	0.431	0.713	0.352	0.129	0.209	4.547	3.268	0.257	0.405	0.716	0.582	0.088	0.147	1.261	0.042	0.351	0.453	0.040	0.065	0.062	0.094
1512	chr11	72469039	72505942	+	0	NA	intron (NM_006645, intron 2 of 6)	MIR3|SINE|MIR	-7085	NR_039841	100616410		NR_039841	ENSG00000265064	MIR4692	-	microRNA 4692	ncRNA	nan	1.698	1.417	2.321	2.001	1.001	0.405	0.258	0.117	0.512	0.201	1.684	2.906	0.329	0.116	1.106	1.660	0.625	0.956	1.873	1.847	3.585	1.591	2.673	2.760	0.801	1.215	5.372	5.678	0.972	0.901	1.146	1.719	1.938	1.936	0.567	1.415	1.395	0.865	2.279	2.584	0.522	0.517	0.405	1.684	0.276	0.924	0.628	0.305
2956	chr15	75109239	75127370	+	0	NA	promoter-TSS (NM_001030005)	promoter-TSS (NM_001030005)	-647	NM_001030005	594855	Hs.187694	NM_001030005	ENSG00000213578	CPLX3	CPX-III|CPXIII|Nbla11589	complexin 3	protein-coding	1.532	1.710	2.673	0.106	0.284	0.195	0.293	0.083	0.106	0.195	0.196	0.231	0.557	0.099	0.060	3.708	5.874	0.865	0.746	0.540	0.500	1.235	0.357	0.345	0.348	1.389	1.772	0.334	0.497	2.870	3.546	1.507	1.960	0.358	0.438	0.953	2.031	0.616	0.421	0.026	0.215	0.079	0.057	0.293	0.231	1.827	0.576	0.858	0.335
8056	chr9	13932604	13983382	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	30023	NR_038194	100113404	Hs.149786	NR_038194	ENSG00000205636	LINC00583	C9orf146	long intergenic non-protein coding RNA 583	ncRNA	nan	nan	0.854	0.229	1.288	0.716	0.395	0.190	0.083	0.290	0.275	0.431	0.815	0.047	0.084	0.224	0.131	1.031	1.768	0.600	0.736	1.570	0.644	0.118	0.115	4.128	6.005	0.792	0.712	0.366	0.164	0.155	0.212	1.092	0.890	0.200	0.358	1.547	1.118	4.466	0.131	0.298	0.107	0.395	0.431	0.015	0.070	0.051	0.051
2946	chr15	73310196	73331808	+	0	NA	Intergenic	MIRc|SINE|MIR	-23823	NM_002499	4756	Hs.388613	NM_002499	ENSG00000067141	NEO1	IGDCC2|NGN|NTN1R2	neogenin 1	protein-coding	1.553	0.823	0.965	0.100	0.301	0.164	0.186	0.079	0.090	0.095	0.148	0.124	0.340	0.030	0.086	0.409	0.333	0.212	0.276	0.245	0.290	0.068	0.044	0.157	0.138	4.708	5.130	0.258	0.282	2.287	2.355	0.238	0.319	0.033	0.063	0.578	1.263	0.635	0.558	0.031	0.087	0.018	0.055	0.186	0.124	0.396	0.056	0.037	0.496
328	chr1	59962966	59978184	+	0	NA	intron (NM_001244714, intron 4 of 13)	intron (NM_001244714, intron 4 of 13)	-10726	NM_001278224	55277	Hs.444301	NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding	1.430	1.289	1.437	0.151	0.386	0.210	0.968	0.311	0.225	0.103	0.168	0.488	0.515	0.092	0.091	2.524	2.828	5.296	2.602	0.638	0.594	1.261	0.423	0.365	0.433	1.022	1.311	1.244	0.974	0.514	0.170	0.547	0.929	0.175	0.467	1.692	nan	0.847	0.561	0.026	0.193	0.063	0.355	0.968	0.488	0.050	0.417	0.238	2.478
8104	chr9	32499301	32504893	+	0	NA	intron (NM_014314, intron 1 of 17)	L1MB8|LINE|L1	24225	NM_014314	23586	Hs.190622	NM_014314	ENSG00000107201	DDX58	RIG-I|RIGI|RLR-1|SGMRT2	DExD/H-box helicase 58	protein-coding	0.570	nan	0.924	0.094	0.220	0.288	0.023	0.215	0.030	0.029	0.147	0.043	0.346	0.058	0.129	5.073	4.357	16.192	4.875	0.359	0.374	0.622	0.142	0.518	0.626	0.329	0.554	0.184	0.192	0.211	0.219	5.591	5.603	0.112	0.120	0.165	0.171	0.677	0.831	0.078	0.048	0.034	0.014	0.023	0.043	0.088	0.018	4.053	
6682	chr6	26507764	26524161	+	0	NA	Intergenic	L2a|LINE|L2	-5972	NR_026790	493812	Hs.272939	NR_026790		HCG11	CTA-14H9.3|bK14H9.3	HLA complex group 11 (non-protein coding)	ncRNA	2.677	1.617	nan	0.460	0.892	0.519	0.380	0.534	0.078	0.421	0.192	0.446	nan	1.359	0.127	1.576	1.277	0.544	nan	1.489	1.485	nan	1.338	1.290	1.338	1.113	1.435	2.955	4.663	1.372	0.974	0.265	0.565	1.417	1.478	3.681	6.085	1.115	0.633	0.078	0.399	0.138	0.189	0.380	0.446	0.320	0.543	0.218	2.656
6144	chr5	3738427	3743693	+	0	NA	Intergenic	Intergenic	144892	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding	0.442	0.734	0.719	0.167	0.171	0.062	0.442	0.125	0.123	0.097	0.172	0.159	0.390	0.020	0.043	0.648	0.523	8.818	7.265	0.538	0.541	0.062	0.067	0.074	0.091	0.204	0.281	nan	0.146	nan	0.392	0.295	0.305	0.008	0.066	0.093	0.070	0.326	nan	0.011	0.114		0.044	0.442	0.159		0.013	0.094	0.093
628	chr1	163409612	163416365	+	0	NA	Intergenic	Intergenic	-20007	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3 subunit J pseudogene	pseudo	1.104	nan	1.133	1.283	1.215	0.546	0.280	0.087	0.154	0.203	0.254	1.409	1.373	0.048	0.078	0.709	0.949	8.914	3.354	2.342	nan	0.567	0.305	0.230	0.178	0.580	0.715	2.809	nan	0.326	0.269	0.556	1.164	0.218	0.171	0.778	2.797	0.640	0.720	0.166	3.300	0.043	0.105	0.280	1.409		0.060	0.259	0.613
1223	chr10	119300288	119306172	+	0	NA	intron (NM_001165924, intron 1 of 1)	CpG	-1130	NR_144378	196047	Hs.312592	NR_002791	ENSG00000229847	EMX2OS	EMX2-AS1|NCRNA00045	EMX2 opposite strand/antisense RNA	ncRNA	0.630	nan	0.395	0.030	0.983	0.355	0.997	0.089	0.054	0.159	0.140	0.082	1.837	0.112	0.028	1.154	3.415	2.184	2.130	0.074	0.176	1.339	0.426	0.086	0.104	0.433	0.863	0.087	0.138	0.648	0.643	0.349	0.291	3.563	3.400	0.064	0.065	0.527	0.384	0.009	0.123	1.797	6.689	0.997	0.082	0.067	0.034		
7525	chr7	142416415	142423983	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-37120	NM_002769	5644	Hs.382212	NM_002769	ENSG00000204983	PRSS1	TRP1|TRY1|TRY4|TRYP1	protease, serine 1	protein-coding	0.777	0.587	1.060	0.104	0.131	0.149	0.101	0.051	0.127	0.351	0.144	0.064	0.377	0.042	0.141	0.485	0.160	0.140	0.220	0.211	0.275	0.156	0.054	0.317	0.448	0.166	0.288	0.130	0.076	0.505	0.349	0.240	0.225	0.116	0.147	0.474	1.509	5.258	nan	0.376	0.644		0.052	0.101	0.064	0.039	0.014	0.030	0.395
4014	chr19	30715781	30723809	+	0	NA	Intergenic	CpG	-143505	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding	5.493	0.388	0.522	0.065	3.283	1.887	3.153	0.057	0.160	0.041	0.052	0.831	0.444	0.498	0.075	0.247	0.267	0.271	0.453	0.198	0.181	0.144	0.082	0.171	0.152	3.921	6.483	0.101	0.160	nan	0.091	0.668	0.658	0.073	0.100	0.334	0.991	0.738	0.503	3.415	0.055		0.376	3.153	0.831	1.862		0.161	0.062
4803	chr20	813487	835092	+	0	NA	promoter-TSS (NM_031424)	promoter-TSS (NM_031424)	-962	NM_031424	83541	Hs.574822	NM_031424	ENSG00000125898	FAM110A	C20orf55|F10|bA371L19.3	family with sequence similarity 110 member A	protein-coding	1.636	2.844	2.039	1.311	1.272	0.772	0.543	0.289	0.061	0.528	0.368	1.496	3.011	0.443	0.079	4.928	6.371	1.045	1.624	2.519	2.251	2.794	0.988	1.356	1.455	0.731	0.989	2.183	2.693	1.938	1.723	1.696	2.781	1.623	1.519	1.143	1.436	0.960	0.550	1.198	0.856	0.434	0.467	0.543	1.496	1.250	0.753	1.215	0.302
4271	chr2	26929130	26948536	+	0	NA	intron (NM_002246, intron 1 of 1)	intron (NM_002246, intron 1 of 1)	23252	NM_002246	3777	Hs.24040	NM_002246	ENSG00000171303	KCNK3	K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1	potassium two pore domain channel subfamily K member 3	protein-coding	1.256	1.075	2.015	0.602	0.475	0.157	0.343	0.292	0.041	0.632	0.297	0.274	2.115	0.168	0.110	0.599	1.143	0.257	0.456	0.750	0.783	0.731	0.307	0.508	0.502	1.477	1.904	2.248	nan	0.945	0.841	0.412	0.436	0.666	0.726	0.639	1.084	1.616	0.851	2.996	0.859	0.249	0.252	0.343	0.274	0.440	2.501	0.040	0.229
5003	chr20	52251486	52424172	+	0	NA	Intergenic	Intergenic	112936	NR_134576	105372672	Hs.259350	NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA	1.225	1.573	1.039	0.216	0.416	0.244	0.626	1.310	0.415	0.067	0.079	0.099	0.323	6.258	0.299	0.998	nan	1.096	3.396	0.819	0.822	0.172	0.072	0.344	0.344	0.710	0.972	0.645	0.860	0.987	0.702	0.503	0.841	0.039	0.043	0.590	1.458	0.217	0.333	0.435	0.523	0.015	0.350	0.626	0.099	0.307	0.068	0.571	0.292
733	chr1	186797594	186820032	+	0	NA	intron (NM_024420, intron 1 of 17)	intron (NM_024420, intron 1 of 17)	10781	NM_001311193	5321	Hs.497200	NM_024420	ENSG00000116711	PLA2G4A	PLA2G4|cPLA2|cPLA2-alpha	phospholipase A2 group IVA	protein-coding	nan	nan	1.156	0.071	0.152	0.093	0.176	0.238	0.130	0.141	0.109	0.106	0.307	0.039	0.148	0.700	0.624	6.140	5.485	0.346	nan	0.156	0.096	nan	0.601	0.516	0.624	0.361	0.311	0.394	0.219	3.366	4.853	0.101	0.134	0.989	nan	0.287	0.448	0.022	0.055	0.009	0.046	0.176	0.106	0.013	0.100	3.441	0.790
6249	chr5	43599199	43605587	+	0	NA	promoter-TSS (NM_012343)	promoter-TSS (NM_012343)	-398	NM_012343	23530	Hs.482043	NM_012343	ENSG00000112992	NNT	GCCD4	nicotinamide nucleotide transhydrogenase	protein-coding	3.134	4.991	6.673	10.960	4.345	1.781	2.425	7.272	0.588	4.509	1.991	5.351	13.667	2.761	0.168	4.774	6.038	4.639	6.091	9.696	7.723	7.079	2.700	4.843	5.313	6.499	7.527	8.812	13.935	3.008	2.950	3.413	6.140	8.031	7.666	2.300	2.482	4.658	2.499	2.791	8.787	1.164	1.003	2.425	5.351	0.898	5.591	2.358	0.986
7711	chr8	62501855	62509739	+	0	NA	intron (NM_004318, intron 14 of 24)	intron (NM_004318, intron 14 of 24)	96611	NM_001164752	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding	3.112	0.978	1.160	0.513	0.388	0.204	2.616	0.528	0.020	1.966	0.880	1.213	3.501	0.082	0.053	0.342	0.556	0.323	0.414	1.777	2.495	2.549	0.625	0.083	0.106	1.794	nan	0.207	0.205	nan	3.894	0.150	0.337	4.331	4.334	0.414	1.335	3.805	1.880	0.113	0.259	1.208	0.160	2.616	1.213	8.591	1.106	0.038	0.472
8425	chrX	153976521	153982845	+	0	NA	promoter-TSS (NM_001081573)	promoter-TSS (NM_001081573)	175	NR_104114	139716	Hs.496982	NM_080612	ENSG00000160219	GAB3	-	GRB2 associated binding protein 3	protein-coding	1.764	1.099	0.875	0.762	0.677	0.355	0.324	0.165	0.025	0.292	0.179	0.413	0.865	0.051	0.053	0.649	0.999	0.414	0.564	1.510	1.238	2.551	0.528	0.308	0.321	0.152	0.386	0.364	0.321	8.803	11.621	0.490	0.468	2.983	2.899	0.416	0.495	1.290	0.714	0.119	0.492	0.862	0.769	0.324	0.413	0.551	0.016	0.126	0.273
630	chr1	163472446	163483775	+	0	NA	Intergenic	L3|LINE|CR1	-85129	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3 subunit J pseudogene	pseudo	0.939	nan	1.075	0.179	0.352	0.198	0.181	0.137	0.127	0.056	0.102	0.258	0.377	0.028	0.137	2.767	4.113	12.000	4.593	0.595	nan	0.383	0.159	0.138	0.135	0.435	0.635	0.520	nan	0.473	0.297	1.318	2.019	0.140	0.170	0.509	1.270	0.554	0.617	0.024	0.534		0.048	0.181	0.258		0.063	1.861	0.326
5001	chr20	50600698	50669148	+	0	NA	Intergenic	MIR|SINE|MIR	87100	NM_001319146	55734	Hs.473082	NM_018197	ENSG00000020256	ZFP64	ZNF338	ZFP64 zinc finger protein	protein-coding	0.921	1.177	0.648	0.117	0.292	0.129	0.419	1.363	0.423	0.131	0.136	0.139	0.457	3.381	0.212	0.573	nan	0.230	0.498	0.254	0.285	1.366	0.372	0.310	0.337	0.471	0.811	0.287	0.357	1.128	1.076	0.288	0.383	0.339	0.468	0.483	1.151	0.374	0.481	0.034	0.085	0.123	0.238	0.419	0.139	0.180	0.056	0.075	0.145
4947	chr20	36496904	36515649	+	0	NA	Intergenic	Intergenic	-25223	NM_080607	128434	Hs.517029	NM_080607	ENSG00000132821	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding	1.074	1.131	0.727	0.458	0.577	0.290	0.495	0.117	0.121	0.417	0.172	1.007	1.846	0.110	0.095	0.685	0.683	0.207	0.238	0.564	nan	2.182	0.551	0.321	0.369	0.306	0.595	0.355	0.587	0.839	0.660	0.413	0.518	0.317	0.257	0.871	nan	0.790	0.507	0.100	3.243	0.030	0.164	0.495	1.007	0.217	0.135	0.100	0.475
7824	chr8	98786527	98792050	+	0	NA	intron (NM_018407, intron 1 of 6)	intron (NM_018407, intron 1 of 6)	1479	NM_018407	55353	Hs.492314	NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding	nan	2.175	8.061	5.068	2.320	1.258	2.043	2.075	0.674	1.366	0.928	3.487	6.023	1.742	0.082	0.855	0.943	2.293	nan	4.401	2.870	12.453	4.653	4.319	4.511	2.852	4.207	10.441	15.264	2.019	2.489	0.966	1.854	8.337	6.760	5.263	4.130	4.070	3.049	0.567	1.203	1.772	1.131	2.043	3.487	0.407	4.232	0.393	1.319
3263	chr17	7482145	7493223	+	0	NA	promoter-TSS (NR_136401)	promoter-TSS (NR_136401)	-287	NR_136401	100996842	Hs.720681	NM_001322800	ENSG00000233223	LOC100996842	-	uncharacterized LOC100996842	protein-coding	2.859	1.625	2.983	1.415	3.228	1.983	1.609	0.531	0.072	0.619	0.402	2.469	2.529	2.950	0.283	5.971	6.017	5.537	7.276	4.068	3.969	4.894	2.916	3.308	3.736	3.372	4.462	6.079	7.332	1.992	1.817	2.118	2.517	1.881	2.509	4.224	5.175	1.289	0.791	2.251	1.138	0.313	1.461	1.609	2.469	0.779	3.376	0.756	2.519
1234	chr10	123250180	123273658	+	0	NA	intron (NM_001144918, intron 8 of 15)	intron (NM_001144918, intron 8 of 15)	28909	NM_001320654	2263	Hs.533683	NM_000141	ENSG00000066468	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding	nan	0.553	0.744	0.056	0.261	0.119	0.197	0.526	0.112	0.047	0.053	0.051	0.217	0.048	0.079	0.362	0.296	3.451	7.217	0.123	0.158	0.308	0.158	0.161	0.134	0.575	0.842	0.382	0.395	0.187	0.153	0.134	0.253	0.057	0.078	0.269	0.738	0.074	0.162	0.042	0.087	0.028	0.065	0.197	0.051	0.092	0.035	0.038	0.221
7368	chr7	90221968	90235484	+	0	NA	intron (NM_001287135, intron 1 of 14)	MIRb|SINE|MIR	3050	NM_001287135	5218	Hs.258576	NM_012395	ENSG00000058091	CDK14	PFTAIRE1|PFTK1	cyclin dependent kinase 14	protein-coding	nan	1.034	nan	0.578	1.255	0.593	0.930	2.738	0.301	1.095	0.825	1.341	2.299	0.724	0.182	2.961	3.223	1.781	1.708	2.455	2.101	1.708	0.558	11.194	11.321	1.800	2.333	1.359	1.469	1.059	1.214	1.961	4.832	1.258	0.865	0.867	nan	1.618	1.232	0.823	0.763	0.319	0.817	0.930	1.341	0.515	0.784	2.566	0.091
4108	chr19	47315643	47344461	+	0	NA	Intergenic	Intergenic	3909	NR_024258	100170220	Hs.541243	NR_024258		SNAR-E	-	small ILF3/NF90-associated RNA E	snRNA	1.338	2.022	1.450	1.679	0.548	0.350	0.396	0.230	0.239	0.229	0.122	1.692	1.151	0.257	0.158	0.296	0.364	0.323	0.504	0.977	1.043	1.681	0.701	0.815	0.977	0.692	1.032	4.279	4.234	0.798	0.646	0.406	0.643	0.243	0.393	0.599	1.421	1.064	0.744	0.348	0.496	0.064	0.184	0.396	1.692	0.273	0.523	0.286	0.185
1687	chr11	118304219	118311154	+	0	NA	intron (NM_001197104, intron 1 of 35)	CpG-4806	481	NM_005933	4297	Hs.258855	NM_005933	ENSG00000118058	KMT2A	ALL-1|CXXC7|HRX|HTRX1|MLL|MLL-AF9|MLL/GAS7|MLL1|MLL1A|TET1-MLL|TRX1|WDSTS	lysine methyltransferase 2A	protein-coding	3.073	2.658	2.334	4.604	3.597	2.240	4.198	0.702	0.046	2.874	1.490	4.619	11.651	4.366	0.165	7.479	nan	9.174	5.662	8.674	7.198	7.758	2.730	11.788	11.164	4.540	nan	5.405	6.877	5.752	6.719	9.734	16.500	4.553	2.979	4.716	5.441	2.944	1.505	3.843	5.303	1.631	3.601	4.198	4.619	0.800	2.947	7.554	2.081
7404	chr7	99677408	99688247	+	0	NA	Intergenic	Intergenic	-2656	NM_001278287	7551	Hs.435302	NM_017715	ENSG00000166526	ZNF3	A8-51|HF.12|KOX25|PP838|Zfp113	zinc finger protein 3	protein-coding	nan	1.828	nan	2.968	3.513	1.882	1.838	1.322	0.209	2.747	1.438	2.901	3.170	2.932	0.250	4.700	4.830	4.108	5.936	4.696	4.672	6.408	4.005	6.277	7.079	2.544	3.926	3.190	4.728	4.683	4.837	3.817	5.443	4.832	5.432	2.841	nan	4.710	2.594	1.444	2.608	0.865	0.796	1.838	2.901	0.931	1.262	1.381	0.536
1188	chr10	101037960	101041742	+	0	NA	Intergenic	MIR3|SINE|MIR	-44219	NM_001166245	60495	Hs.500750	NM_021828	ENSG00000172987	HPSE2	HPA2|HPR2|UFS|UFS1	heparanase 2 (inactive)	protein-coding	nan	nan	1.056	0.046	0.082	0.160	0.174	0.119	0.115	0.041	0.037	0.063	0.393	0.082	0.154	3.813	6.375	10.648	11.208	0.272	0.420	0.150	0.064	1.131	0.700	0.269	nan	0.284	0.359	0.274	0.064	0.655	1.483	0.110	0.040	0.183	nan	0.230	0.341		0.023		0.021	0.174	0.063	0.003	0.027	0.169	0.032
3142	chr16	52572332	52614128	+	0	NA	intron (NR_033920, intron 3 of 3)	intron (NR_033920, intron 3 of 3)	-11516	NM_001146188	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding	nan	nan	nan	3.870	2.090	0.971	1.862	0.077	0.077	0.162	0.114	3.411	4.422	0.034	0.083	0.483	0.415	0.217	0.229	3.850	3.502	2.922	0.636	3.067	3.080	1.124	nan	8.534	nan	nan	0.468	0.200	0.289	0.668	0.561	0.412	nan	nan	0.660	1.619	1.810	0.098	0.297	1.862	3.411	0.189	1.065	0.062	0.094
7455	chr7	116653058	116665369	+	0	NA	intron (NM_018412, intron 1 of 14)	intron (NM_018412, intron 1 of 14)	-1052	NR_106748	102466616		NR_106748	ENSG00000004866	MIR6132	hsa-mir-6132	microRNA 6132	ncRNA	nan	1.085	3.619	0.728	0.685	0.262	1.618	0.229	0.099	1.183	0.788	0.964	2.919	0.619	0.170	1.198	1.433	0.297	0.315	2.812	2.209	6.139	2.750	0.627	0.626	4.279	4.711	0.948	1.511	2.732	3.017	0.667	1.078	2.885	3.655	0.086	0.409	3.779	2.271	1.466	3.856	0.255	0.465	1.618	0.964	0.740	1.278	0.530	0.020
7138	chr7	4776995	4781165	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	-36182	NM_014855	9907	Hs.558440	NM_014855	ENSG00000242802	AP5Z1	KIAA0415|SPG48|zeta	adaptor related protein complex 5 zeta 1 subunit	protein-coding	1.364	0.739	0.964	2.124	0.337	0.121	0.671	0.431	0.115	0.411	0.438	1.126	nan	0.997	0.183	0.606	0.517	0.309	nan	1.564	1.649	nan	0.253	0.929	0.779	0.497	0.956	nan	7.325	0.195	0.107	0.154	0.410	1.025	2.451	0.309	0.532	0.457	0.416	1.108	0.193	0.139	0.095	0.671	1.126	0.234	8.452	0.095	0.119
714	chr1	183619256	183625900	+	0	NA	promoter-TSS (NM_203454)	promoter-TSS (NM_203454)	-130	NM_203454	403314	Hs.97335	NM_203454	ENSG00000173627	APOBEC4	C1orf169	apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4	protein-coding	nan	nan	2.213	0.187	1.647	1.010	0.232	0.531	0.097	2.475	1.206	0.144	0.592	0.115	0.125	7.122	14.203	8.747	6.723	0.953	nan	3.230	1.653	nan	6.928	3.429	4.862	2.134	3.131	2.727	3.037	6.966	11.203	5.307	3.748	0.980	nan	1.778	1.562	0.084	0.343	1.263	0.036	0.232	0.144	0.467	0.214	8.439	0.816
4364	chr2	55319824	55357090	+	0	NA	intron (NM_001321904, intron 1 of 9)	intron (NM_001321904, intron 1 of 9)	26510	NM_001321904	57142	Hs.637850	NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding	1.865	nan	1.985	0.926	1.525	0.730	0.820	1.449	0.221	0.567	0.210	0.371	1.359	0.137	0.135	2.180	2.534	0.408	0.538	0.639	0.522	1.925	0.661	0.519	0.526	1.053	1.302	1.475	1.449	4.251	3.499	1.895	2.441	0.513	0.777	2.122	6.849	0.658	0.589	0.832	1.279	0.105	0.669	0.820	0.371	0.680	2.189	2.191	1.806
7293	chr7	56073890	56079218	+	0	NA	Intergenic	AluSx3|SINE|Alu	42714	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding	4.249	3.535	3.750	1.477	1.431	0.595	0.479	0.889	0.317	0.591	0.583	2.023	9.734	0.144	0.164	0.934	0.867	8.201	6.891	1.778	1.547	5.467	0.940	1.610	1.421	2.018	2.813	5.952	5.984	0.440	0.436	1.905	3.885	4.225	4.504	0.305	0.430	3.194	1.368	3.141	0.150	1.692	0.121	0.479	2.023	0.473	2.007	5.542	0.093
5008	chr20	53238601	53251694	+	0	NA	intron (NM_177959, intron 6 of 7)	intron (NM_177959, intron 6 of 7)	152890	NM_177959	55816	Hs.473133	NM_018431	ENSG00000101134	DOK5	C20orf180|IRS-6|IRS6	docking protein 5	protein-coding	1.239	0.939	0.745	0.094	0.166	0.134	0.024	0.125	0.095	0.012	0.127	0.064	0.304	0.025	0.134	6.209	nan	2.604	1.371	0.216	0.245	0.153	0.124	1.743	1.664	1.076	1.717	0.310	0.360	2.766	2.055	2.970	4.858	0.122	0.089	0.763	1.300	0.197	0.307	0.021	0.180	0.068	0.441	0.024	0.064	0.564	0.013	3.693	0.836
4631	chr2	182531956	182562726	+	0	NA	Intergenic	Intergenic	-1949	NM_002500	4760	Hs.574626	NM_002500	ENSG00000162992	NEUROD1	BETA2|BHF-1|MODY6|NEUROD|bHLHa3	neuronal differentiation 1	protein-coding	4.182	1.010	1.768	0.319	0.488	0.286	0.354	0.106	0.068	0.198	0.212	0.451	0.682	0.025	0.071	0.304	0.248	0.159	0.136	0.320	0.445	1.817	0.822	0.251	0.266	nan	7.067	0.884	1.114	11.325	15.320	0.111	0.247	0.663	0.628	3.952	nan	0.415	0.334	0.483	0.047	0.176	0.314	0.354	0.451	0.850	0.063	0.052	2.490
3285	chr17	14735209	14752759	+	0	NA	Intergenic	Intergenic	-174138	NR_135638	101928475	Hs.638944	NR_135638	ENSG00000232058	LOC101928475	-	uncharacterized LOC101928475	ncRNA	0.532	0.410	0.432	0.030	0.417	0.192	0.134	0.064	0.074	0.054	0.060	0.027	0.180	0.029	0.087	0.605	0.395	1.446	nan	0.180	0.183	0.496	0.155	0.081	0.125	0.080	0.157	0.150	0.159	nan	0.084	0.130	0.177	0.057	0.051	0.119	0.250	0.112	0.161	0.006	0.020		0.019	0.134	0.027	0.014	0.046	0.039	0.028
1657	chr11	113944641	113971343	+	0	NA	intron (NM_001018011, intron 2 of 6)	intron (NM_001018011, intron 2 of 6)	26704	NM_001018011	7704	Hs.591945	NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding	0.565	0.856	0.483	3.045	0.464	0.234	0.782	0.041	0.036	0.302	0.155	0.701	0.663	0.053	0.101	0.677	nan	0.112	0.162	0.880	0.813	0.663	0.180	0.112	0.114	0.286	nan	2.492	2.404	0.377	0.214	0.606	0.735	0.417	0.421	0.227	0.508	1.741	1.013	0.089	0.097	0.125	0.065	0.782	0.701	0.066	0.228	0.162	0.157
3009	chr16	277875	286550	+	0	NA	Intergenic	AluYc|SINE|Alu	-2333	NM_032039	83986	Hs.513225	NM_032039	ENSG00000167930	FAM234A	C16orf9|ITFG3|gs19	family with sequence similarity 234 member A	protein-coding	3.349	nan	2.247	4.218	3.654	1.938	3.097	1.508	0.467	1.513	0.679	3.150	7.675	2.584	0.069	4.250	3.736	1.975	3.315	4.804	4.430	nan	4.850	7.559	8.456	2.912	nan	4.557	7.153	4.380	4.293	1.519	2.540	4.699	4.544	3.900	3.588	2.883	1.669	2.320	4.692	0.691	1.182	3.097	3.150	1.062	2.167	0.647	0.871
2717	chr14	85008434	85015046	+	0	NA	Intergenic	Intergenic	-841879	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA	nan	0.596	0.662	0.237	0.151	0.121	0.290	0.080	0.057	0.048	0.019	0.108	0.315	0.032	0.091	0.256	0.089	9.202	1.659	0.388	0.417	0.249	0.092	0.769	0.756	0.208	0.257	0.243	0.224	0.460	0.265	0.049	0.190	0.159	0.237	0.148	0.216	0.730	0.731	0.059	0.130	0.043	0.109	0.290	0.108		0.015	0.050	
6825	chr6	56609376	56627518	+	0	NA	intron (NM_001144769, intron 4 of 96)	intron (NM_001144769, intron 4 of 96)	90016	NM_183380	667	Hs.604915	NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding	1.646	1.363	nan	0.203	0.145	0.106	0.387	0.559	0.159	0.182	0.136	0.099	0.484	1.034	0.157	0.419	0.357	0.346	0.641	0.493	0.513	0.461	0.187	0.397	0.338	2.254	3.073	0.845	0.953	1.586	0.971	0.188	0.271	0.418	0.774	1.802	4.974	0.650	0.614	0.115	0.224	0.104	0.179	0.387	0.099	0.164	0.076	0.055	2.179
4659	chr2	198360091	198373053	+	0	NA	intron (NM_001202485, intron 2 of 8)	intron (NM_001202485, intron 2 of 8)	-1574	NM_199440	3329	Hs.595053	NM_002156	ENSG00000144381	HSPD1	CPN60|GROEL|HLD4|HSP-60|HSP60|HSP65|HuCHA60|SPG13	heat shock protein family D (Hsp60) member 1	protein-coding	2.799	nan	2.201	2.967	4.632	2.469	1.793	0.864	0.199	1.081	0.894	2.244	7.052	1.526	0.123	1.792	2.585	2.275	3.606	3.153	3.319	2.899	1.588	7.497	7.236	2.211	2.558	3.914	5.318	5.308	5.887	3.445	8.101	2.092	2.010	5.397	6.375	1.475	0.710	1.458	1.481	0.442	1.615	1.793	2.244	0.772	1.388	1.230	4.128
771	chr1	201121976	201142434	+	0	NA	intron (NM_001288564, intron 1 of 5)	AluJb|SINE|Alu	8505	NM_001288564	252839	Hs.181444	NM_016456	ENSG00000116857	TMEM9	DERM4|TMEM9A	transmembrane protein 9	protein-coding	2.073	2.212	2.139	0.970	1.848	1.138	0.872	0.852	0.125	0.981	0.424	2.338	2.696	1.071	0.110	2.040	2.524	2.315	3.617	2.865	2.592	3.775	0.846	nan	nan	0.785	1.143	2.106	2.661	0.951	1.024	0.447	0.872	0.724	0.960	1.863	4.849	0.837	0.652	0.558	0.635	0.126	0.648	0.872	2.338	0.230	0.501	0.290	0.729
5697	chr3	177269395	177293103	+	0	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	121540	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA	1.423	1.423	1.331	0.600	1.256	0.704	0.476	0.605	0.224	0.866	0.500	0.618	0.683	0.078	0.129	0.302	0.341	0.551	1.216	0.650	0.927	6.384	2.722	0.231	0.267	0.680	0.943	0.931	0.671	0.734	0.306	0.150	0.231	1.032	1.541	0.642	1.779	2.269	1.220	0.215	0.116	0.182	0.182	0.476	0.618	0.053	0.203	0.054	0.565
401	chr1	91485377	91489490	+	0	NA	promoter-TSS (NM_016620)	promoter-TSS (NM_016620)	-368	NM_016620	84146	Hs.173001	NM_016620	ENSG00000122482	ZNF644	BM-005|MYP21|NatF|ZEP-2	zinc finger protein 644	protein-coding	7.773	nan	5.739	5.713	6.403	4.086	5.639	3.525	0.278	1.450	0.928	5.694	10.938	4.840	0.210	5.313	6.198	8.219	10.572	10.406	nan	8.188	5.390	15.819	16.276	6.660	nan	14.725	19.508	nan	5.121	5.869	8.305	3.672	3.444	10.213	9.372	3.832	2.031	5.409	3.377	0.718	4.913	5.639	5.694	1.649	2.371	1.850	3.083
186	chr1	32664852	32672671	+	0	NA	intron (NM_024296, intron 2 of 5)	AT_rich|Low_complexity|Low_complexity	-2475	NM_001160042	55721	Hs.274356	NM_018134	ENSG00000160051	IQCC	-	IQ motif containing C	protein-coding	4.120	nan	2.618	5.580	2.348	1.186	2.806	1.176	0.163	2.597	1.158	6.388	6.756	1.476	0.126	2.622	3.722	3.523	4.630	6.478	6.543	nan	1.912	4.510	4.799	4.038	4.830	2.410	4.263	nan	1.855	1.917	3.413	1.957	1.964	2.263	3.064	3.112	nan	2.640	4.253	0.365	0.952	2.806	6.388	1.033	2.024	1.230	0.788
1914	chr12	32627811	32645376	+	0	NA	Intergenic	Intergenic	-2313	NM_001330374	121512	Hs.117835	NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	1.556	nan	1.321	0.330	0.223	0.101	0.095	0.046	0.054	0.108	0.123	0.252	0.372	0.067	0.108	0.596	0.594	0.520	0.773	0.663	0.627	0.588	0.303	0.439	0.475	2.999	3.676	0.349	0.373	0.492	0.236	0.173	0.245	1.037	0.990	0.285	0.777	0.641	0.499	0.052	0.233	0.189	0.234	0.095	0.252	0.105	0.072	0.084	0.275
6696	chr6	30580684	30587687	+	0	NA	intron (NM_002714, intron 2 of 19).5	intron (NM_002714, intron 2 of 19).5	899	NM_002714	5514	Hs.106019	NM_002714	ENSG00000204569	PPP1R10	CAT53|FB19|PNUTS|PP1R10|R111|p99	protein phosphatase 1 regulatory subunit 10	protein-coding	8.689	5.031	nan	7.917	7.588	3.872	5.788	6.363	0.302	3.878	1.956	10.180	15.693	8.201	0.269	13.387	14.252	8.933	nan	nan	15.546	12.161	9.474	23.102	25.032	8.156	10.334	13.017	17.383	14.793	15.421	8.352	10.822	10.925	11.879	12.828	10.986	5.933	2.734	6.702	5.128	1.800	4.609	5.788	10.180	1.675	2.280	2.959	3.466
6495	chr5	146829869	146838564	+	0	NA	promoter-TSS (NM_001387)	promoter-TSS (NM_001387)	-956	NM_001387	1809	Hs.519659	NM_001387	ENSG00000113657	DPYSL3	CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1	dihydropyrimidinase like 3	protein-coding	nan	1.979	1.220	1.561	3.683	1.662	0.488	0.659	0.166	1.030	0.444	4.510	11.535	0.125	0.132	2.845	4.322	4.050	4.254	4.820	3.806	2.367	1.124	0.113	0.070	4.371	5.593	1.764	3.865	1.458	1.625	2.256	5.110	2.636	2.705	1.598	3.279	2.395	1.222	1.141	1.743	0.991	1.078	0.488	4.510	0.192	1.305	3.540	0.453
6940	chr6	124122230	124164893	+	0	NA	intron (NM_153355, intron 1 of 5)	intron (NM_153355, intron 1 of 5)	18570	NM_001040214	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding	0.713	0.864	0.993	1.630	4.303	2.298	0.222	0.100	0.045	0.839	0.625	1.307	2.156	0.054	0.123	0.452	0.281	0.447	0.300	2.172	2.155	3.405	1.068	4.504	4.534	0.879	1.025	2.325	2.373	0.457	0.189	0.080	0.195	2.231	2.361	0.163	0.289	0.734	0.503	4.989	3.129	0.426	0.079	0.222	1.307	0.046	0.977	0.030	0.050
1705	chr11	121520046	121543949	+	0	NA	Intergenic	Intergenic	209085	NM_003105	6653	Hs.368592	NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding	1.085	0.764	1.939	0.112	0.353	0.246	0.298	0.724	0.126	1.170	1.206	0.063	1.092	0.354	0.117	0.388	0.230	0.264	0.343	0.713	0.684	2.675	0.575	0.829	0.950	0.236	0.467	0.122	0.170	0.812	0.599	0.561	0.591	3.530	2.938	0.209	nan	1.704	1.071	1.210	0.380	1.186	0.093	0.298	0.063	0.032	0.223	0.145	0.176
3000	chr15	94908755	94915807	+	0	NA	intron (NM_001159644, intron 3 of 9)	intron (NM_001159644, intron 3 of 9)	13117	NM_001159644	55784	Hs.33368	NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding	nan	nan	nan	0.049	0.807	0.295	0.331	0.021	0.252	4.386	3.308	2.053	1.072	0.030	0.061	0.383	0.251	0.408	0.440	3.431	4.352	nan	0.107	0.360	0.290	2.388	2.752	0.190	0.153	nan	0.203	0.180	0.383	4.705	4.335	0.022	nan	3.795	1.509	0.016	0.127	1.913	0.155	0.331	2.053	0.097	0.015	0.042	0.017
6729	chr6	34503004	34524303	+	0	NA	intron (NM_012391, intron 1 of 5)	AluSx1|SINE|Alu	10457	NM_012391	25803	Hs.485158	NM_012391	ENSG00000124664	SPDEF	PDEF|bA375E1.3	SAM pointed domain containing ETS transcription factor	protein-coding	nan	1.850	nan	0.363	0.305	0.181	0.325	0.176	0.113	0.650	0.376	0.355	1.415	0.122	0.080	0.551	0.699	0.270	nan	nan	0.935	0.698	0.310	0.486	0.559	0.992	1.535	1.790	2.089	1.637	1.795	0.349	0.353	2.131	1.707	1.226	1.598	2.086	1.068	0.369	0.166	0.964	0.116	0.325	0.355	0.863	1.155	0.019	0.452
7512	chr7	139757839	139764238	+	0	NA	intron (NM_022750, intron 1 of 11)	MLT1J1|LTR|ERVL-MaLR	2483	NM_022750	64761	Hs.12646	NM_022750	ENSG00000059378	PARP12	ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1	poly(ADP-ribose) polymerase family member 12	protein-coding	nan	nan	nan	1.374	1.520	0.626	1.378	2.099	0.299	1.531	0.745	7.062	4.915	1.652	0.100	1.345	1.239	2.960	5.008	3.189	3.100	nan	1.091	5.614	5.721	0.171	nan	2.012	3.993	nan	1.181	2.598	2.832	1.149	1.302	0.476	0.444	3.038	nan	3.579	2.431	0.134	0.494	1.378	7.062	0.137	0.398	0.496	0.097
6558	chr5	174894801	174907462	+	0	NA	Intergenic	L2a|LINE|L2	-4370	NM_001322977	94081	Hs.369440	NM_022754	ENSG00000164466	SFXN1	TCC	sideroflexin 1	protein-coding	1.595	1.147	1.359	0.644	0.674	0.469	0.424	0.378	0.203	0.383	0.335	2.323	2.751	0.850	0.165	0.860	1.033	4.372	nan	1.971	1.944	1.435	0.745	0.986	1.015	0.954	nan	1.411	1.984	2.491	2.510	0.703	1.338	1.157	1.133	0.950	1.362	0.954	0.616	0.680	1.146	0.249	0.558	0.424	2.323	0.223	0.640	0.317	0.332
5390	chr3	62780343	62826138	+	0	NA	intron (NM_183394, intron 1 of 27)	intron (NM_183394, intron 1 of 27)	57824	NM_003716	8618	Hs.654933	NM_003716	ENSG00000163618	CADPS	CADPS1|CAPS|CAPS1|UNC-31	calcium dependent secretion activator	protein-coding	1.106	nan	0.980	0.139	0.230	0.126	0.190	0.037	0.025	0.109	0.105	0.172	0.638	0.031	0.072	0.509	0.505	0.217	0.263	0.399	0.431	0.919	0.284	0.072	0.067	0.614	0.878	0.382	0.385	0.744	0.427	0.655	1.010	0.413	0.669	1.464	4.986	0.563	0.493	0.152	0.614	0.089	0.129	0.190	0.172	0.068	0.035	1.334	2.396
5260	chr22	37857568	37888146	+	0	NA	intron (NM_001166343, intron 4 of 6)	intron (NM_001166343, intron 4 of 6)	9568	NM_001166343	4242	Hs.517603	NM_002405	ENSG00000100060	MFNG	-	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	1.679	nan	0.588	0.070	0.347	0.157	0.548	0.124	0.120	0.087	0.068	0.271	0.775	0.117	0.110	3.230	4.117	0.221	0.279	1.211	0.778	0.469	0.132	0.617	0.671	0.203	nan	0.713	1.067	nan	1.719	1.195	1.509	0.170	0.252	0.285	0.454	0.295	0.335	0.770	1.117	0.053	1.575	0.548	0.271	1.661	0.623	0.649	0.036
1586	chr11	94980077	95000463	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-24565	NM_001271594	143686	Hs.120633	NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding	1.050	nan	0.867	0.113	1.134	0.516	0.544	0.059	0.134	0.354	0.238	0.106	1.852	0.027	0.133	0.728	0.629	0.351	nan	0.997	1.125	0.140	0.121	0.574	0.570	2.309	2.695	0.733	0.786	0.739	0.539	1.198	2.127	2.500	1.927	0.527	nan	2.389	1.433	2.839	0.575	0.578	1.063	0.544	0.106	0.191	0.335	2.781	0.309
7918	chr8	126175533	126197707	+	0	NA	intron (NM_173685, intron 4 of 7)	intron (NM_173685, intron 4 of 7)	82537	NM_173685	286053	Hs.388297	NM_173685	ENSG00000156831	NSMCE2	C8orf36|MMS21|NSE2|ZMIZ7	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	nan	nan	nan	0.303	0.456	0.317	0.289	0.701	0.135	0.071	0.094	0.227	nan	0.082	0.081	0.355	0.249	0.539	1.220	0.613	0.717	0.650	0.285	nan	nan	0.455	0.619	0.273	0.341	0.717	0.375	0.255	0.395	0.338	0.983	1.286	5.167	0.386	0.486	0.035	0.148	0.039	0.118	0.289	0.227	0.035	0.119	0.107	1.700
1986	chr12	59574798	59586430	+	0	NA	Intergenic	Intergenic	-266295	NM_153377	121227	Hs.253736	NM_153377	ENSG00000139263	LRIG3	LIG3	leucine rich repeats and immunoglobulin like domains 3	protein-coding	nan	0.746	0.633	0.128	0.233	0.014	0.098	0.136	0.062	0.195	0.221	0.073	0.347	0.018	0.093	nan	0.266	0.132	0.277	0.291	nan	9.068	2.458	0.259	0.287	0.293	nan	0.405	nan	0.389	0.135	0.183	0.233	0.140	0.183	0.149	0.212	0.508	0.618	0.015	0.046	0.040	0.084	0.098	0.073		0.087	0.076	0.074
1456	chr11	63822651	63876200	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	-21937	NM_013280	23769	Hs.584876	NM_013280	ENSG00000126500	FLRT1	SPG68	fibronectin leucine rich transmembrane protein 1	protein-coding	nan	1.797	0.880	1.011	1.734	0.804	0.874	0.424	0.093	0.654	0.478	0.530	3.901	0.183	0.101	0.913	1.363	0.325	0.461	2.562	2.461	1.709	0.595	0.527	0.572	0.601	1.036	1.397	1.769	1.034	0.916	0.902	0.967	1.139	0.955	0.399	1.096	1.820	0.941	5.898	1.422	0.229	0.121	0.874	0.530	0.580	0.732	0.259	0.237
7471	chr7	128471103	128474470	+	0	NA	intron (NM_001127487, intron 1 of 46)	intron (NM_001127487, intron 1 of 46)	2303	NM_001127487	2318	Hs.58414	NM_001458	ENSG00000128591	FLNC	ABP-280|ABP280A|ABPA|ABPL|CMH26|FLN2|MFM5|MPD4|RCM5	filamin C	protein-coding	5.389	0.819	1.502	0.210	0.238	0.113	2.617	0.797	0.293	0.233	0.064	0.313	0.348	3.617	0.100	0.528	1.402	0.252	0.411	0.606	0.728	0.779	0.355	0.357	0.461	1.669	2.104	0.331	0.442	9.859	12.591	0.288	0.259	1.185	1.159	4.429	7.990	0.650	0.357	1.742	0.182	0.172	5.352	2.617	0.313	4.894	0.727	0.058	3.158
2060	chr12	85076676	85141603	+	0	NA	Intergenic	Intergenic	197469	NM_018057	55117	Hs.44424	NM_018057	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	solute carrier family 6 member 15	protein-coding	0.772	0.791	0.618	0.104	0.749	0.397	0.126	0.227	0.145	0.110	0.187	0.164	0.258	0.049	0.105	0.302	0.217	0.451	0.444	0.381	0.489	0.776	0.310	0.288	0.252	7.656	7.683	0.327	0.291	0.384	0.160	0.358	0.420	1.410	1.327	0.278	0.456	0.757	0.578	0.027	0.079	0.223	0.048	0.126	0.164	0.027	0.044	0.294	0.105
3561	chr17	74536307	74555639	+	0	NA	Intergenic	L1ME2|LINE|L1	-7873	NR_038111	100507246	Hs.288215	NR_038108	ENSG00000163597	SNHG16	Nbla10727|Nbla12061|ncRAN	small nucleolar RNA host gene 16	ncRNA	2.936	2.232	2.137	1.087	1.733	0.796	1.987	1.229	0.282	1.004	0.522	1.126	5.175	1.159	0.118	3.436	3.858	2.089	4.845	2.391	2.346	2.490	1.059	3.125	3.335	nan	3.373	2.462	3.359	4.306	4.498	1.469	2.298	1.998	2.558	2.953	4.107	nan	1.101	0.424	1.011	0.281	0.414	1.987	1.126	1.270	1.120	0.648	1.268
8195	chr9	92269644	92308761	+	0	NA	intron (NR_024280, intron 3 of 5)	intron (NR_024280, intron 3 of 5)	34504	NR_024280	100129066	Hs.125947	NR_024280	ENSG00000237372	UNQ6494	-	uncharacterized LOC100129066	ncRNA	1.368	nan	5.829	6.161	3.244	1.714	2.083	0.061	0.054	1.179	0.565	4.894	4.341	0.034	0.071	0.618	1.017	0.369	nan	8.473	7.437	4.206	0.974	0.262	0.285	0.668	1.044	7.765	9.443	1.614	1.817	0.466	0.656	3.152	2.649	1.049	1.938	3.507	1.802	3.373	3.011	1.132	1.958	2.083	4.894	0.643	1.420	0.452	0.477
7001	chr6	138698252	138710896	+	0	NA	Intergenic	Intergenic	-20094	NM_001326380	23593	Hs.486589	NM_014320	ENSG00000051620	HEBP2	C6ORF34B|C6orf34|PP23|SOUL	heme binding protein 2	protein-coding	0.969	0.817	1.200	1.467	1.315	0.925	0.252	0.084	0.116	0.632	0.267	0.384	0.506	0.066	0.124	0.452	0.305	0.242	0.317	0.612	0.560	8.133	2.372	0.349	0.325	0.188	0.381	1.757	1.647	0.790	0.273	0.169	0.316	2.069	1.638	0.360	nan	2.090	0.853	0.149	0.147	0.363	0.050	0.252	0.384	0.078	1.354	0.070	0.078
2904	chr15	63472028	63495359	+	0	NA	intron (NM_016530, intron 1 of 7)	intron (NM_016530, intron 1 of 7)	1965	NM_016530	51762	Hs.389733	NM_016530	ENSG00000166128	RAB8B	-	RAB8B, member RAS oncogene family	protein-coding	1.372	0.884	nan	0.136	0.388	0.289	0.322	0.639	0.159	0.173	0.188	0.393	2.424	0.233	0.066	0.376	0.508	0.794	1.136	0.802	0.933	nan	0.283	0.336	0.373	3.017	3.294	0.615	0.726	5.329	4.602	0.588	0.847	0.522	0.618	0.641	1.417	1.044	0.584	0.094	0.137	0.183	0.364	0.322	0.393	0.250	0.348	0.241	0.289
7788	chr8	92664754	92676908	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	359077	NM_175636	862	Hs.368431	NM_004349	ENSG00000079102	RUNX1T1	AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2	RUNX1 translocation partner 1	protein-coding	nan	0.945	2.261	0.188	0.362	0.200	0.125	0.120	0.079	0.026	0.066	0.166	0.277	0.009	0.087	0.201	0.305	0.268	nan	0.559	0.721	0.427	0.153	0.187	0.111	1.569	1.559	0.667	0.700	5.701	5.907	0.106	0.157	0.287	0.438	1.831	5.786	0.299	0.302	0.050	0.089	0.063	1.195	0.125	0.166	0.548	0.041	0.065	5.017
3643	chr18	3491058	3531245	+	0	NA	intron (NM_001003809, intron 7 of 9)	intron (NM_001003809, intron 7 of 9)	44903	NR_110428	100505592	Hs.635114	NR_110428	ENSG00000266835	GAPLINC	LINC01540	gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA	ncRNA	1.497	1.879	1.608	0.442	0.504	0.295	0.156	0.157	0.088	0.380	0.309	1.998	nan	1.977	0.186	1.111	0.730	1.652	2.146	2.380	2.351	nan	0.141	0.481	0.499	0.697	nan	1.992	2.581	nan	0.667	0.577	0.916	1.018	1.429	0.432	nan	nan	1.349	3.391	0.369	0.230	1.078	0.156	1.998	0.208	0.699	0.622	0.220
5325	chr3	11649634	11685827	+	0	NA	intron (NM_014667, intron 2 of 5)	intron (NM_014667, intron 2 of 5)	17721	NM_001128219	9686	Hs.740389	NM_014667	ENSG00000144560	VGLL4	VGL-4	vestigial like family member 4	protein-coding	nan	1.304	1.221	0.283	0.375	0.167	0.409	0.974	0.120	0.317	0.206	0.294	0.413	0.415	0.102	0.515	0.664	0.941	1.502	1.136	1.087	0.707	0.291	1.065	1.114	0.991	1.255	1.201	1.506	3.495	3.317	3.456	4.557	0.964	1.128	2.063	3.778	1.054	0.708	0.804	0.253	0.203	0.282	0.409	0.294	0.155	0.376	4.638	1.462
2346	chr13	74706415	74711375	+	0	NA	promoter-TSS (NM_007249)	promoter-TSS (NM_007249)	-829	NM_007249	11278	Hs.373857	NM_007249	ENSG00000118922	KLF12	AP-2rep|AP2REP|HSPC122	Kruppel like factor 12	protein-coding	nan	5.839	5.366	5.799	9.776	5.494	9.750	3.119	0.637	1.274	0.464	7.331	19.603	6.641	0.150	9.256	13.656	5.547	6.776	18.005	12.755	nan	4.136	4.824	4.484	0.767	0.996	3.750	6.668	nan	11.286	2.499	8.048	6.320	4.011	5.086	nan	1.058	0.837	5.813	9.696	1.905	10.831	9.750	7.331	2.137	1.864	4.757	2.396
2195	chr12	123941957	123944612	+	0	NA	promoter-TSS (NM_180699)	promoter-TSS (NM_180699)	633	NM_022717	11066	Hs.632738	NM_007020	ENSG00000184209	SNRNP35	HM-1|U1SNRNPBP	small nuclear ribonucleoprotein U11/U12 subunit 35	protein-coding	6.670	4.377	4.975	6.795	8.657	4.334	5.637	4.069	2.362	3.836	2.597	9.657	14.759	9.054	0.399	7.958	9.512	8.195	11.944	12.646	12.355	13.102	7.694	24.623	26.893	6.360	8.445	16.351	23.125	10.341	11.085	7.789	11.864	11.998	11.835	9.842	9.822	7.864	3.965	7.063	7.543	2.395	3.526	5.637	9.657	2.520	4.052	2.717	3.124
5546	chr3	132926668	132934490	+	0	NA	intron (NM_001282865, intron 1 of 3)	intron (NM_001282865, intron 1 of 3)	45386	NR_110812	101927455	Hs.570550	NR_110812	ENSG00000251011	TMEM108-AS1	-	TMEM108 antisense RNA 1	ncRNA	1.089	nan	nan	0.098	1.519	0.712	0.373	0.960	0.163	0.278	0.188	0.352	0.379	0.014	0.078	0.371	0.185	15.512	4.845	0.448	0.579	1.162	0.475	0.715	0.766	0.908	1.295	0.416	0.361	nan	0.464	0.162	0.186	0.096	0.178	0.412	1.257	0.920	0.652	0.763	0.240	0.049	0.040	0.373	0.352	0.131	0.104	0.013	0.190
6329	chr5	73302508	73459848	+	0	NA	Intergenic	Intergenic	222972	NR_105009	102503429	Hs.519391	NR_105009	ENSG00000248942	LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA	1.140	nan	1.156	0.206	0.623	0.321	0.417	0.366	0.073	0.388	0.208	0.348	1.008	4.580	0.192	0.239	0.187	1.225	2.075	0.785	0.772	nan	0.643	0.136	0.134	3.543	nan	0.558	0.445	0.731	0.547	0.106	0.166	1.669	1.653	0.579	1.910	0.932	0.581	0.807	0.151	0.607	0.211	0.417	0.348	0.257	0.374	0.034	0.810
5202	chr22	23798101	23804312	+	0	NA	Intergenic	Intergenic	25455	NR_110538	101929374	Hs.616963	NR_110538	ENSG00000234928	LINC01659	-	long intergenic non-protein coding RNA 1659	ncRNA	1.763	nan	0.757	0.101	9.390	5.236	0.559	0.096	0.078	0.762	0.659	1.812	0.428	0.088	0.067	0.546	0.998	0.241	0.542	0.664	0.733	1.399	0.376	0.499	0.469	0.543	0.832	0.599	1.166	0.859	0.672	0.499	1.011	3.142	2.832	0.479	0.650	1.893	1.323	0.061	0.250	1.299	1.375	0.559	1.812	0.808	1.238	0.627	0.270
2555	chr14	36487249	36494462	+	0	NA	Intergenic	Intergenic	-48778	NR_073454	101101773	Hs.640678	NR_073454	ENSG00000257585	LINC00609	-	long intergenic non-protein coding RNA 609	ncRNA	1.478	0.981	0.818	0.155	4.113	2.221	0.320	0.217	0.045	0.477	0.342	0.332	0.700	0.075	0.088	0.299	0.159	0.185	0.221	1.501	1.498	0.880	0.375	0.294	0.213	0.733	0.907	0.455	0.459	0.740	0.391	0.155	0.145	9.360	12.282	0.176	0.335	2.874	1.223	0.325	0.164	3.589	0.044	0.320	0.332	0.054	0.071	0.097	0.034
3718	chr18	31151802	31166634	+	0	NA	intron (NM_030632, intron 1 of 11)	intron (NM_030632, intron 1 of 11)	677	NM_030632	80816	Hs.464876	NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	additional sex combs like 3, transcriptional regulator	protein-coding	nan	1.175	0.854	1.538	1.060	0.469	1.452	0.071	0.109	0.890	0.597	3.215	5.202	1.478	0.076	0.564	0.500	1.109	1.160	4.924	4.588	3.523	1.090	0.823	0.888	1.405	1.860	nan	6.257	0.959	0.720	0.199	0.384	6.749	6.590	0.623	1.104	4.411	2.574	1.721	1.703	1.866	0.497	1.452	3.215	0.354	1.253	0.087	0.117
2475	chr13	114829082	114844487	+	0	NA	intron (NM_001320821, intron 2 of 25)	intron (NM_001320821, intron 2 of 25)	6670	NM_001320822	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding	1.319	nan	0.669	1.616	0.350	0.209	3.301	1.852	0.157	0.103	0.086	0.302	0.660	0.098	0.044	1.936	1.896	0.261	0.549	0.473	0.512	0.836	0.346	0.206	0.185	0.404	0.575	1.354	1.852	0.834	0.577	0.961	0.966	0.503	0.549	0.357	0.326	0.090	0.118	1.226	0.305	0.062	0.065	3.301	0.302	0.883	1.765	0.380	0.144
3834	chr18	55404652	55425846	+	0	NA	intron (NM_005603, intron 1 of 27)	intron (NM_005603, intron 1 of 27)	55078	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding	nan	1.216	1.127	0.567	2.171	1.291	1.131	0.293	0.114	0.598	0.343	1.550	0.848	0.031	0.085	0.611	0.653	0.907	1.556	0.768	0.834	6.278	3.882	1.131	1.137	0.236	0.378	1.753	1.893	0.339	0.192	0.655	1.265	3.662	4.365	0.232	0.465	nan	2.102	0.090	0.800	0.929	0.272	1.131	1.550	0.055	0.647	0.930	0.104
4084	chr19	42771406	42791763	+	0	NA	intron (NM_001304815, intron 2 of 20)	AluSx|SINE|Alu	-7233	NM_015125	23152	Hs.388236	NM_015125	ENSG00000079432	CIC	-	capicua transcriptional repressor	protein-coding	4.739	2.446	3.297	2.272	3.196	1.771	4.019	1.405	0.238	1.877	0.971	3.862	5.687	4.187	0.144	2.470	3.576	2.902	4.605	4.918	4.637	3.873	2.286	5.662	6.000	4.016	5.307	2.842	4.363	3.974	3.454	2.537	3.925	5.700	5.947	2.869	3.794	2.862	1.290	3.714	3.260	2.444	1.226	4.019	3.862	1.947	1.679	2.432	1.148
5491	chr3	116141151	116173757	+	0	NA	intron (NM_002338, intron 1 of 6)	intron (NM_002338, intron 1 of 6)	6931	NM_002338	4045	Hs.26409	NM_002338	ENSG00000185565	LSAMP	IGLON3|LAMP	limbic system-associated membrane protein	protein-coding	1.430	nan	0.673	0.300	1.857	0.954	0.303	0.103	0.124	2.675	1.751	0.298	0.254	1.098	0.086	1.456	2.146	1.451	1.062	0.491	nan	1.977	0.700	1.266	1.288	nan	4.326	0.360	0.389	1.443	1.053	0.552	1.355	1.242	1.380	0.206	0.422	1.087	0.748	0.101	0.083	0.362	0.174	0.303	0.298	0.214	0.090	0.581	0.125
297	chr1	49677671	49682329	+	0	NA	intron (NM_001323573, intron 4 of 12)	intron (NM_001323573, intron 4 of 12)	-43083	NR_125988	101929721	Hs.639985	NR_125988	ENSG00000230114	LOC101929721	-	uncharacterized LOC101929721	ncRNA	nan	0.860	nan	0.169	0.453	0.308	0.072	0.118	0.055	0.168	0.125	0.179	0.203	0.034	0.123	1.450	1.290	10.461	2.011	0.438	0.519	0.160	0.089	0.677	0.752	0.231	nan	nan	0.368	0.388	0.063	0.832	nan	1.278	1.400	0.623	1.332	0.888	0.724	0.038	0.136	0.267	0.090	0.072	0.179			0.338	0.192
963	chr1	244009088	244015765	+	0	NA	Intergenic	Intergenic	-5540	NM_001206729	10000	Hs.498292	NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding	8.832	3.524	nan	8.134	7.011	3.840	6.854	3.424	0.288	3.767	1.810	6.974	7.852	3.286	0.109	0.576	0.409	1.808	2.423	11.391	9.425	7.582	4.073	2.491	2.419	4.597	6.391	5.250	8.206	10.085	11.279	1.315	2.133	7.169	5.769	8.329	8.173	2.746	1.735	0.240	2.097	2.544	3.825	6.854	6.974	1.745	2.888	1.250	2.859
4959	chr20	44043778	44051182	+	0	NA	intron (NR_047692, intron 2 of 10)	intron (NR_047692, intron 2 of 10)	2773	NR_047695	51604	Hs.437388	NM_015937	ENSG00000124155	PIGT	CGI-06|MCAHS3|NDAP|PNH2	phosphatidylinositol glycan anchor biosynthesis class T	protein-coding	nan	4.863	1.847	4.193	4.013	2.156	0.745	0.862	0.109	1.592	0.834	4.638	4.451	1.008	0.119	6.227	11.353	1.615	2.306	1.943	2.178	nan	3.764	3.389	3.575	1.433	2.252	4.909	6.416	nan	1.416	7.326	9.752	1.933	1.428	0.992	1.572	1.709	1.087	0.285	0.406	0.450	2.170	0.745	4.638	0.496	2.412	7.211	0.466
4931	chr20	32376659	32387763	+	0	NA	intron (NR_110623, intron 3 of 3)	intron (NR_110623, intron 3 of 3)	16694	NR_110623	101929746	Hs.504633	NR_110623	ENSG00000230753	ZNF341-AS1	-	ZNF341 antisense RNA 1	ncRNA	1.125	6.533	3.491	2.737	0.696	0.415	0.179	0.216	0.130	0.296	0.123	3.992	2.491	0.116	0.093	2.097	2.197	0.424	0.750	2.132	nan	1.956	0.648	6.160	6.706	0.410	0.659	10.693	10.443	0.638	0.306	0.759	1.653	0.146	0.239	0.372	nan	0.580	0.426	2.428	0.557	0.053	0.509	0.179	3.992	0.097	0.103	0.446	0.201
6340	chr5	77274671	77316449	+	0	NA	Intergenic	Intergenic	41489	NR_105013	101929154	Hs.252895	NR_105012		LOC101929154	-	uncharacterized LOC101929154	ncRNA	1.185	nan	0.885	0.434	3.701	1.823	0.692	0.164	0.065	0.214	0.166	0.530	0.591	0.059	0.125	0.230	0.219	0.621	1.615	2.051	1.785	nan	0.829	0.124	0.164	0.695	nan	1.051	1.413	1.896	1.501	0.139	0.210	1.842	2.173	0.634	1.767	0.366	0.297	0.102	6.081	0.388	0.065	0.692	0.530	0.044	0.538	0.026	1.111
2031	chr12	77977409	78007067	+	0	NA	Intergenic	L1ME4a|LINE|L1	-232831	NM_001024383	89795	Hs.655301	NM_014903	ENSG00000067798	NAV3	POMFIL1|STEERIN3|unc53H3	neuron navigator 3	protein-coding	nan	0.774	0.633	0.132	0.309	0.136	0.164	0.211	0.130	0.330	0.244	0.107	0.320	0.026	0.085	0.330	0.208	0.170	0.244	0.538	0.604	0.233	0.114	0.277	0.298	4.451	5.031	nan	0.493	0.786	0.538	0.123	0.192	0.098	0.139	0.738	1.221	nan	0.895	0.088	0.181	0.016	0.027	0.164	0.107	0.150	0.146	0.063	0.338
5627	chr3	160112744	160123706	+	0	NA	promoter-TSS (NM_005496)	promoter-TSS (NM_005496)	-122	NM_005496	10051	Hs.58992	NM_005496	ENSG00000113810	SMC4	CAP-C|CAPC|SMC-4|SMC4L1	structural maintenance of chromosomes 4	protein-coding	6.120	4.960	2.842	5.161	5.669	3.337	1.884	5.296	0.431	3.421	1.863	3.487	6.181	1.928	0.105	3.503	3.661	6.278	9.390	7.463	7.498	7.157	5.314	5.892	5.796	5.091	6.222	nan	7.032	11.305	10.038	2.654	5.629	2.897	3.383	4.725	6.029	2.974	1.805	4.131	3.084	0.730	2.708	1.884	3.487	0.772	1.389	1.645	1.777
980	chr1	248056970	248072992	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	6092	NM_001001957	343171	Hs.269151	NM_001001957	ENSG00000238243	OR2W3	OR2W3P|OR2W8P|OST718	olfactory receptor family 2 subfamily W member 3	protein-coding	nan	0.776	nan	0.198	0.236	0.130	0.148	0.081	0.020	0.041	0.107	0.164	0.301	0.034	0.129	0.728	0.637	1.253	1.630	0.289	0.368	0.199	0.090	8.006	8.254	0.111	0.196	0.279	0.420	0.217	0.092	0.323	0.482	0.095	0.104	0.120	0.175	0.154	0.203	0.026	0.069	0.042	0.030	0.148	0.164	0.079	0.044	0.349	0.023
1596	chr11	96032216	96077733	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-19628	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA	0.987	nan	1.001	0.236	0.477	0.193	1.060	0.750	0.071	0.227	0.156	0.082	1.298	3.544	0.166	0.829	0.754	1.243	nan	0.806	0.842	0.247	0.113	2.042	2.023	2.599	3.179	0.178	0.183	0.629	0.359	0.391	0.562	1.637	1.695	0.840	nan	0.623	0.551	0.605	0.298	0.372	0.164	1.060	0.082	0.051	0.013	0.163	0.588
5957	chr4	82369882	82395816	+	0	NA	intron (NM_001300735, intron 1 of 13)	intron (NM_001300735, intron 1 of 13)	10233	NM_001300735	153020	Hs.591696	NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding	1.239	0.909	1.278	1.276	4.982	2.523	0.957	0.104	0.068	0.733	0.297	1.891	2.943	0.033	0.081	0.490	0.454	2.571	2.663	3.296	3.131	4.621	2.299	0.799	0.857	0.525	nan	2.104	2.730	2.377	2.312	0.109	0.171	1.222	1.776	1.118	nan	1.500	0.777	1.486	2.213	0.381	2.443	0.957	1.891	0.063	0.296	0.027	0.668
7941	chr8	134244771	134264741	+	0	NA	intron (NM_001135242, intron 14 of 15)	MIRb|SINE|MIR	51474	NM_001204870	8840	Hs.492974	NM_003882	ENSG00000104415	WISP1	CCN4|WISP1c|WISP1i|WISP1tc	WNT1 inducible signaling pathway protein 1	protein-coding	nan	1.433	2.619	2.529	0.393	0.280	0.096	0.104	0.138	0.330	0.161	0.904	6.506	0.033	0.096	0.274	0.239	0.190	0.474	1.083	1.072	3.117	0.994	nan	1.226	0.221	0.422	3.171	2.561	1.248	1.484	0.326	0.585	0.534	0.338	0.563	1.537	0.966	0.693	0.676	0.963	0.067	0.100	0.096	0.904	0.286	1.320	0.417	0.712
2697	chr14	78662244	78672369	+	0	NA	intron (NM_001330195, intron 1 of 20)	MIR3|SINE|MIR	30590	NR_073547	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding	1.199	0.939	1.140	0.079	1.115	0.647	1.046	0.148	0.064	0.323	0.219	1.407	4.509	0.131	0.117	0.362	0.154	0.088	0.144	2.388	1.839	2.379	0.627	0.192	0.153	0.562	0.984	1.692	nan	0.534	0.277	0.071	0.169	1.803	2.230	0.134	0.206	3.791	nan	4.620	2.093	0.432	0.819	1.046	1.407	0.293		0.010	0.037
2097	chr12	98139329	98152015	+	0	NA	intron (NR_077241, intron 1 of 6)	MLT2A2|LTR|ERVL	1704	NR_077241	643711	Hs.585557	NR_077240	ENSG00000257501	LOC643711	-	platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene	pseudo	0.775	1.088	0.825	0.698	1.372	0.594	0.442	0.115	0.073	1.608	1.425	1.866	nan	0.051	0.104	0.306	0.198	0.514	0.854	1.008	1.106	1.673	0.588	0.427	0.373	0.535	nan	3.008	nan	0.313	0.147	0.287	0.472	2.806	2.647	0.127	0.180	5.386	2.458	1.961	0.338	0.738	0.024	0.442	1.866	0.038	0.320	0.405	0.050
6423	chr5	121645504	121668890	+	0	NA	intron (NM_001308107, intron 1 of 8)	L2c|LINE|L2	9433	NM_001308100	9627	Hs.426463	NM_005460	ENSG00000064692	SNCAIP	SYPH1|Sph1	synuclein alpha interacting protein	protein-coding	nan	1.196	1.117	1.489	2.419	1.171	0.176	0.087	0.109	0.961	0.649	2.706	5.627	0.070	0.123	0.233	0.342	0.370	nan	6.720	7.456	0.947	0.217	0.549	0.568	2.380	3.092	2.616	2.415	0.423	0.213	0.112	0.275	3.004	2.625	0.168	0.217	1.687	0.780	1.189	3.585	0.848	0.264	0.176	2.706	0.012	1.793	0.036	0.032
1651	chr11	113183935	113189964	+	0	NA	intron (NM_001318533, intron 1 of 21)	intron (NM_001318533, intron 1 of 21)	1698	NM_017868	54970	Hs.288772	NM_017868	ENSG00000149292	TTC12	TPARM	tetratricopeptide repeat domain 12	protein-coding	1.240	1.914	1.730	1.592	1.000	0.401	0.524	0.038		0.468	0.548	2.800	2.583	1.442	0.117	10.245	16.362	3.314	5.644	1.945	1.853	2.501	0.941	1.308	1.459	1.116	nan	4.519	5.742	1.539	1.239	1.600	3.023	3.899	5.088	1.337	2.271	0.957	0.628	0.293	0.341	1.871	0.210	0.524	2.800	0.339	0.809	1.839	0.328
5451	chr3	107835942	107850465	+	0	NA	promoter-TSS (NR_110030)	promoter-TSS (NR_110030)	-708	NR_110030	101929623	Hs.570653	NR_110028	ENSG00000271856	LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA	nan	nan	0.777	0.309	6.203	3.755	0.438	0.362	0.122	2.727	1.729	1.402	0.390	0.037	0.045	0.915	1.184	4.272	2.964	1.213	0.999	10.351	5.018	0.420	0.445	0.337	0.573	1.168	1.142	0.571	0.269	0.192	0.350	1.702	1.663	0.396	0.726	4.016	1.821	0.197	0.439	0.369	0.156	0.438	1.402	0.106	0.090	0.096	0.211
6778	chr6	44036289	44055526	+	0	NA	Intergenic	Intergenic	-3518	NR_125864	101929705	Hs.670378	NR_125864	ENSG00000237686	LOC101929705	-	uncharacterized LOC101929705	ncRNA	1.792	1.682	1.832	0.761	2.011	1.232	1.553	0.788	0.108	0.412	0.366	1.087	1.711	0.236	0.114	0.960	3.184	1.520	1.414	5.470	4.453	1.997	0.981	1.817	1.952	0.513	0.905	1.684	nan	1.180	1.699	0.795	1.468	0.629	0.609	0.636	1.840	0.794	0.531	1.737	1.053	0.287	0.710	1.553	1.087	0.203	1.691	0.721	1.295
2123	chr12	105724071	105740619	+	0	NA	intron (NM_001145199, intron 1 of 5)	MSTB1|LTR|ERVL-MaLR	7931	NM_001145199	387882	Hs.368938	NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding	1.024	1.059	nan	0.867	0.691	0.511	0.556	0.914	0.349	1.239	0.971	0.718	3.445	0.302	0.152	0.299	0.205	0.413	0.801	1.320	1.495	3.112	0.946	0.393	0.473	0.497	0.798	0.845	1.295	0.537	0.418	0.172	0.415	1.779	1.648	0.343	0.800	1.660	0.882	2.075	4.201	0.928	0.231	0.556	0.718	0.064	0.255	0.054	0.113
5594	chr3	147109597	147112812	+	0	NA	promoter-TSS (NR_033118)	promoter-TSS (NR_033118)	-987	NR_040762	84107	Hs.415766	NM_032153	ENSG00000174963	ZIC4	-	Zic family member 4	protein-coding	0.632	nan	nan	0.054	0.327	0.052	0.279	2.979	0.300	1.315	0.614	0.204	0.160	2.865	0.116	0.417	0.199	5.585	7.902	0.086	0.173	nan	0.075	27.405	28.157	0.533	nan	13.601	20.889	nan	18.698	0.220	0.183	0.071	0.016	2.250	1.335	0.330	0.287		0.358	0.030	0.025	0.279	0.204		2.108	0.083	0.202
3701	chr18	25357886	25374771	+	0	NA	Intergenic	Intergenic	250221	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding	0.751	1.906	1.312	1.876	0.373	0.252	1.383	0.071	0.019	0.324	0.271	1.764	5.015	0.019	0.059	0.473	0.316	0.538	nan	2.995	2.762	2.593	0.838	0.182	0.186	1.319	1.364	8.882	7.866	0.492	0.302	0.127	0.386	0.425	0.270	0.262	0.444	5.150	3.089	1.419	0.793	0.034	0.199	1.383	1.764	0.046	0.690	0.164	0.060
2675	chr14	75417605	75432439	+	0	NA	Intergenic	AluJr|SINE|Alu	-2555	NM_001207012	5228	Hs.252820	NM_002632	ENSG00000119630	PGF	D12S1900|PGFL|PIGF|PLGF|PlGF-2|SHGC-10760	placental growth factor	protein-coding	2.570	1.003	0.940	0.438	0.682	0.334	1.398	0.383	0.134	0.074	0.122	0.674	2.589	0.256	0.102	0.430	0.886	0.439	0.596	1.379	1.211	0.703	0.255	1.015	1.052	1.980	2.621	0.558	nan	1.534	2.368	0.532	0.978	0.346	0.492	0.576	0.849	1.672	nan	4.177	0.619	0.096	0.668	1.398	0.674	0.602	0.466	0.288	0.098
8266	chr9	126760787	126781400	+	0	NA	intron (NR_135129, intron 1 of 1)	CpG	582	NR_135129	100505588	Hs.547168	NR_135129	ENSG00000236668	LOC100505588	-	uncharacterized LOC100505588	ncRNA	nan	nan	0.608	4.106	1.400	0.692	1.784	0.284	0.071	2.200	0.959	4.768	nan	0.509	0.057	0.360	0.398	0.582	0.673	2.210	1.569	0.986	0.391	0.367	0.507	1.729	nan	1.664	2.462	4.161	4.235	0.643	1.152	0.469	0.421	0.319	0.468	nan	1.345	0.800	0.118	0.106	0.172	1.784	4.768	0.716	1.522	0.241	0.123
7308	chr7	66498052	66512901	+	0	NA	intron (NM_018264, intron 7 of 15)	intron (NM_018264, intron 7 of 15)	43684	NR_134540	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog	protein-coding	nan	nan	nan	0.496	0.370	0.184	0.272	0.615	0.306	0.958	0.449	0.369	0.584	0.104	0.142	0.403	0.608	0.334	0.502	0.560	0.646	1.113	0.289	0.496	0.457	2.542	2.565	0.707	0.584	0.708	0.430	0.187	0.369	0.222	0.228	0.728	1.688	4.140	1.615	0.430	0.138	0.052	0.965	0.272	0.369	0.314	5.577	0.093	0.417
6830	chr6	58160607	58168046	+	0	NA	Intergenic	L1MEf|LINE|L1	98881	NR_132999	375513	Hs.561539	NM_206908		GUSBP4	C6orf216|GUSBL2|SMA3-L|SMAC3L	glucuronidase, beta pseudogene 4	pseudo	0.820	0.753	nan	7.369	0.675	0.324	0.195	0.086	0.107	0.780	0.612	3.693	2.332	0.043	0.131	0.490	0.296	0.196	0.237	3.252	2.848	0.888	0.360	0.247	0.310	0.143	0.340	15.249	11.014	0.348	0.111	0.223	0.090	0.174	0.147	0.132	0.287	3.222	1.659	0.059	0.575	0.064	0.022	0.195	3.693		3.715	0.026	0.049
6756	chr6	39182860	39198042	+	0	NA	intron (NM_003740, intron 1 of 4)	intron (NM_003740, intron 1 of 4)	6800	NM_003740	8645	Hs.444448	NM_003740	ENSG00000164626	KCNK5	K2p5.1|KCNK5b|TASK-2|TASK2	potassium two pore domain channel subfamily K member 5	protein-coding	nan	1.551	nan	0.123	0.669	0.234	0.142	0.104	0.117	0.176	0.111	0.050	2.982	0.344	0.088	0.664	0.725	0.263	nan	nan	0.550	2.524	0.892	0.967	0.925	0.492	0.656	2.240	2.543	0.848	0.692	0.798	0.909	0.088	0.081	0.689	1.570	0.701	0.661	5.389	0.216	0.037	0.041	0.142	0.050	0.108	0.053	0.554	0.316
1287	chr11	4656456	4670867	+	0	NA	Intergenic	AluSc|SINE|Alu	-1495	NM_152430	143503	Hs.470038	NM_152430	ENSG00000180785	OR51E1	D-GPCR|DGPCR|GPR136|GPR164|OR51E1P|OR52A3P|POGR|PSGR2	olfactory receptor family 51 subfamily E member 1	protein-coding	0.424	0.704	0.559	0.365	0.397	0.290	0.072	0.156	0.068	0.281	0.187	0.174	0.517	0.052	0.083	0.456	0.220	0.335	0.393	0.682	0.855	2.193	0.875	0.194	0.134	0.156	0.341	8.210	6.741	0.643	0.558	0.259	0.367	0.273	0.313	0.214	0.375	2.557	1.391	0.161	0.234	0.072	0.027	0.072	0.174	0.013	0.882	0.152	0.052
4650	chr2	192769712	192786389	+	0	NA	Intergenic	Intergenic	-66044	NM_004657	8436	Hs.26530	NM_004657	ENSG00000168497	SDPR	CAVIN2|PS-p68|SDR|cavin-2	serum deprivation response	protein-coding	0.913	nan	0.769	0.232	0.361	0.241	0.176	0.508	0.098	0.073	0.084	0.069	0.406	0.059	0.086	0.441	0.515	0.251	0.337	0.180	0.288	0.471	0.194	0.350	0.365	3.656	3.948	0.504	0.454	0.351	0.167	0.234	0.286	0.068	0.081	0.342	0.717	0.440	0.406	0.017	0.080	0.017	0.243	0.176	0.069	0.023	0.030	0.090	0.201
8378	chrX	38659797	38666462	+	0	NA	promoter-TSS (NR_046706)	promoter-TSS (NR_046706)	7	NR_046706	100874211	Hs.662789	NR_046706		MID1IP1-AS1	-	MID1IP1 antisense RNA 1	ncRNA	6.369	4.672	4.279	5.739	6.298	3.216	4.932	3.696	0.412	3.413	1.803	3.399	12.995	3.141	0.085	1.972	3.028	3.509	5.197	8.658	6.497	8.360	3.368	10.065	10.440	3.895	5.047	7.858	10.946	11.545	16.663	5.746	9.026	7.491	5.223	8.044	10.154	2.673	1.225	2.539	2.307	1.861	3.594	4.932	3.399	1.388	2.145	5.019	4.481
7153	chr7	8380336	8385692	+	0	NA	TTS (NR_125740)	TTS (NR_125740)	-80772	NM_004968	3382	Hs.487561	NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding	0.988	1.964	1.081	2.731	10.338	5.536	0.929	0.167	0.030	0.799	0.539	5.268	nan	0.088	0.158	0.451	0.378	0.259	nan	8.072	8.515	nan	0.692	0.496	0.521	0.858	1.033	nan	0.335	0.203	0.083	0.161	0.224	1.765	1.651	0.309	0.635	4.765	2.438	0.114	2.011	0.266	0.579	0.929	5.268	0.072	0.019	0.055	0.037
283	chr1	45031769	45055253	+	0	NA	intron (NM_001319957, intron 1 of 13)	AluJb|SINE|Alu	32346	NR_049849	100847089		NR_049849	ENSG00000263381	MIR5584	-	microRNA 5584	ncRNA	nan	0.749	nan	0.558	0.192	0.110	0.260	0.196	0.089	0.180	0.222	0.056	0.303	0.068	0.112	0.923	1.147	0.211	0.301	0.486	0.561	3.552	0.961	0.401	0.468	0.209	nan	nan	0.404	0.421	0.252	0.899	nan	0.463	0.595	0.310	0.551	1.241	0.793	0.038	0.103	0.126	0.054	0.260	0.056	0.142	0.256	0.501	0.163
7304	chr7	64703123	64736447	+	0	NA	Intergenic	AluSx1|SINE|Alu	-118927	NM_152626	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding	nan	nan	nan	0.410	0.406	0.197	0.207	0.097	0.150	0.358	0.253	0.588	1.064	0.628	0.152	1.128	0.985	0.662	0.998	1.307	1.121	1.173	0.365	0.793	0.772	0.248	0.393	0.590	0.802	0.729	0.551	0.685	0.901	0.419	0.295	1.763	3.735	1.131	0.715	0.720	2.249	0.075	0.300	0.207	0.588	0.508	0.308	0.375	1.412
5860	chr4	37400352	37404301	+	0	NA	intron (NM_001144990, intron 3 of 6)	intron (NM_001144990, intron 3 of 6)	-53226	NM_001104629	55286	Hs.107527	NM_018302	ENSG00000154274	C4orf19	-	chromosome 4 open reading frame 19	protein-coding	0.507	0.466	0.534	0.067	0.129	0.097	0.031	0.135	0.040	0.039	0.087	0.062	0.174	0.028	0.085	5.666	6.459	11.024	4.505	0.196	0.268	0.134	0.045	2.199	2.732	0.347	0.514	0.282	0.295	0.514	0.197	10.232	14.410	0.076	0.051	0.109	0.094	0.581	0.506	0.042	0.138	0.063	0.100	0.031	0.062			12.077	0.031
4178	chr2	2847142	2856266	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	278094	NR_110228	101927554	Hs.638446	NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA	1.863	1.928	2.630	2.246	4.172	1.972	2.879	0.092	0.017	2.299	1.337	6.984	12.683	0.047	0.085	2.212	4.753	4.493	1.840	13.316	11.993	4.972	1.339	2.706	2.937	3.150	3.533	10.326	8.504	3.581	4.672	0.990	1.949	1.890	1.125	0.346	0.606	3.225	1.876	10.889	4.996	0.336	0.224	2.879	6.984	3.713	6.772	0.605	0.082
3414	chr17	41430453	41450133	+	0	NA	Intergenic	Intergenic	25973	NR_027412	100130581	Hs.546897	NR_027412	ENSG00000188825	LINC00910	-	long intergenic non-protein coding RNA 910	ncRNA	2.655	3.343	nan	3.197	5.620	3.047	2.389	2.217	0.696	2.080	1.097	2.366	6.056	2.071	0.160	1.805	2.364	2.807	3.817	9.116	nan	4.017	3.271	10.448	11.612	1.021	1.405	3.195	nan	6.479	6.484	5.199	5.502	2.786	2.902	3.329	4.510	1.944	1.146	3.785	4.314	0.348	1.260	2.389	2.366	1.149	1.613	1.945	1.140
4278	chr2	28884116	28919429	+	0	NA	Intergenic	Intergenic	-72842	NM_206876	5500	Hs.702907	NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD	protein phosphatase 1 catalytic subunit beta	protein-coding	0.973	0.843	0.852	0.715	0.317	0.149	1.434	0.727	0.096	0.245	0.135	0.197	4.636	0.059	0.127	0.320	0.322	0.334	0.872	0.422	0.432	3.231	0.971	0.416	0.497	0.432	0.651	1.744	nan	0.535	0.357	0.180	0.242	0.497	0.687	0.622	1.659	1.188	0.798	0.174	0.852	0.108	0.265	1.434	0.197	0.064	0.648	0.045	0.227
7040	chr6	149287316	149295304	+	0	NA	intron (NM_005715, intron 5 of 7)	intron (NM_005715, intron 5 of 7)	-5490	NR_038408	100128176	Hs.557541	NR_038408		UST-AS1	-	UST antisense RNA 1	ncRNA	nan	1.050	nan	1.563	0.318	0.100	6.529	0.180	0.041	1.530	0.423	1.809	0.747	0.085	0.145	0.416	0.400	0.319	0.320	4.304	3.338	14.294	5.378	0.472	0.504	0.143	0.177	4.508	5.586	0.485	0.303	0.218	0.326	1.467	0.961	0.124	0.215	4.125	2.354	2.765	1.751	0.142	2.543	6.529	1.809	0.401	0.733	0.062	0.077
7742	chr8	72261372	72280988	+	0	NA	intron (NM_000503, intron 1 of 17)	intron (NM_000503, intron 1 of 17)	-2256	NM_172058	2138	Hs.444971	NM_000503	ENSG00000104313	EYA1	BOP|BOR|BOS1|OFC1	EYA transcriptional coactivator and phosphatase 1	protein-coding	4.803	3.398	1.073	0.910	0.427	0.261	2.833	3.767	0.228	0.268	0.278	0.249	0.994	0.038	0.089	0.722	0.437	0.241	0.304	5.891	5.365	1.978	0.879	6.135	5.892	4.104	4.997	0.428	0.493	7.102	7.072	0.228	0.455	5.569	4.777	5.758	7.374	1.678	0.991	0.054	0.796	1.065	0.663	2.833	0.249	0.311	0.203	0.091	2.621
7480	chr7	129928282	129946961	+	0	NA	intron (NM_001163446, intron 1 of 9)	intron (NM_001163446, intron 1 of 9)	4647	NM_016352	51200	Hs.93764	NM_016352	ENSG00000128510	CPA4	CPA3	carboxypeptidase A4	protein-coding	1.181	0.675	0.937	0.239	0.609	0.403	0.705	0.612	0.181	0.477	0.540	1.888	1.622	0.087	0.167	0.392	0.254	0.236	0.414	1.748	1.707	0.858	0.281	0.258	0.205	0.482	0.749	0.515	1.015	0.655	0.402	0.242	0.301	0.274	0.322	0.351	0.653	1.179	0.806	0.637	4.412	0.106	0.110	0.705	1.888	0.079	0.076	0.058	0.072
1744	chr11	132488870	132517288	+	0	NA	intron (NM_001319104, intron 2 of 6)	intron (NM_001319104, intron 2 of 6)	310453	NM_001319106	4978	Hs.4817	NM_002545	ENSG00000183715	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule like	protein-coding	0.604	nan	0.763	0.136	0.340	0.135	0.528	0.021	0.040	0.137	0.145	0.405	nan	0.038	0.118	1.512	1.363	2.390	3.822	0.528	0.670	0.671	0.224	3.451	3.622	0.167	0.245	5.765	6.166	0.578	0.361	0.617	1.201	0.185	0.184	0.179	0.477	0.284	0.348	0.341	0.085	0.024	0.112	0.528	0.405	0.017	0.057	0.390	0.183
7683	chr8	57497085	57525168	+	0	NA	Intergenic	MIR|SINE|MIR	-38744	NR_038236	100507632	Hs.583755	NR_038236	ENSG00000246430	LINC00968	-	long intergenic non-protein coding RNA 968	ncRNA	0.780	nan	0.685	0.072	0.164	0.092	0.313	0.069	0.075	0.184	0.133	0.051	0.267	0.062	0.111	0.328	0.243	0.340	0.463	0.634	0.736	4.698	1.192	0.113	0.106	0.130	nan	0.107	0.102	0.630	0.363	0.066	0.159	0.742	0.789	0.141	0.260	1.716	1.153	0.016	0.101	0.068	0.095	0.313	0.051	0.093	0.265	0.035	0.053
864	chr1	214722874	214728204	+	0	NA	promoter-TSS (NM_005401)	promoter-TSS (NM_005401)	-515	NM_005401	5784	Hs.193557	NM_005401	ENSG00000152104	PTPN14	PEZ|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	2.138	1.460	4.231	0.279	0.947	0.392	0.464	5.051	0.274	0.293	0.230	0.155	nan	9.870	0.290	1.033	1.174	8.366	18.489	0.773	0.882	nan	0.154	6.456	7.115	1.751	nan	0.678	0.923	2.652	3.447	0.299	0.571	0.196	0.167	1.569	3.980	0.400	0.463	0.022	0.079		0.387	0.464	0.155	0.290	0.227	0.056	2.847
1170	chr10	84330882	84348107	+	0	NA	intron (NM_001165973, intron 3 of 10)	intron (NM_001165973, intron 3 of 10)	-346818	NR_120666	101929590	Hs.733268	NR_120666	ENSG00000225738	NRG3-AS1	C10orf100|Em:AC010157.1	NRG3 antisense RNA 1	ncRNA	0.432	0.709	0.511	0.067	0.174	0.075	0.015	0.084	0.037	0.054	0.062	0.062	0.288	0.047	0.087	0.327	0.234	0.299	0.314	0.108	0.162	0.107	0.049	0.076	0.071	2.981	3.264	0.277	0.298	0.226	0.128	0.069	0.093	0.087	0.128	0.247	0.376	0.169	0.211	0.013	0.036	0.039	0.041	0.015	0.062	0.084	0.012	0.069	0.014
7638	chr8	32395898	32426717	+	0	NA	intron (NM_013964, intron 1 of 11)	intron (NM_013964, intron 1 of 11)	5579	NM_001160002	3084	Hs.453951	NM_004495	ENSG00000157168	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding	0.500	0.884	nan	0.135	0.220	0.114	0.271	0.183	0.126	0.109	0.124	0.058	0.859	3.356	0.137	0.233	0.158	0.269	0.644	0.607	0.665	0.590	0.223	0.134	0.143	0.290	0.468	0.381	0.450	0.628	0.407	0.087	0.157	0.072	0.126	0.326	0.670	0.920	0.709	0.116	0.102	0.022	0.052	0.271	0.058	0.132	0.086	0.039	0.192
8307	chr9	134877668	134920670	+	0	NA	intron (NM_004269, intron 2 of 7)	intron (NM_004269, intron 2 of 7)	56105	NM_001253882	9442	Hs.374262	NM_004269	ENSG00000160563	MED27	CRAP34|CRSP34|CRSP8|MED3|TRAP37	mediator complex subunit 27	protein-coding	nan	1.128	2.161	1.925	1.324	0.682	0.322	0.277	0.150	0.596	0.386	1.094	2.957	0.053	0.075	1.041	1.052	0.414	0.645	3.049	2.940	nan	0.324	0.281	0.277	2.966	3.172	2.489	3.550	3.379	3.474	1.070	1.208	1.956	3.900	0.581	1.179	1.805	1.117	0.573	2.086	0.689	0.194	0.322	1.094	0.697	1.817	0.985	0.775
1686	chr11	118271119	118273945	+	0	NA	intron (NM_006476, intron 1 of 2)	CpG	428	NM_006476	10632	Hs.486360	NM_006476	ENSG00000167283	ATP5L	ATP5JG	ATP synthase, H+ transporting, mitochondrial Fo complex subunit G	protein-coding	2.912	3.373	3.396	7.094	6.557	3.505	3.464	1.724	0.175	2.774	1.734	5.042	11.857	5.938	0.352	8.915	nan	11.227	15.522	7.136	9.060	9.931	6.119	14.196	15.476	5.436	7.618	9.115	13.486	9.924	8.332	12.966	18.844	6.511	10.142	6.180	5.453	4.397	2.353	3.697	4.159	1.891	2.130	3.464	5.042	1.244	2.853	5.757	1.321
4817	chr20	3993256	4000658	+	0	NA	promoter-TSS (NM_001321749)	promoter-TSS (NM_001321749)	-719	NM_001321749	11237	Hs.547576	NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding	2.154	3.214	3.314	1.160	1.086	0.500	0.904	0.610	0.218	0.403	0.226	1.001	3.569	0.702	0.105	8.353	10.485	1.554	2.560	3.122	2.571	1.859	0.569	2.789	3.110	1.333	2.084	2.807	4.642	1.447	1.230	1.340	2.663	1.086	1.283	1.315	2.182	1.262	0.762	0.902	1.737	0.182	0.268	0.904	1.001	0.854	0.553	0.844	0.415
4745	chr2	229042393	229046969	+	0	NA	intron (NM_001142644, intron 1 of 11)	intron (NM_001142644, intron 1 of 11)	1680	NM_001142644	80309	Hs.436306	NM_030623	ENSG00000153820	SPHKAP	SKIP	SPHK1 interactor, AKAP domain containing	protein-coding	nan	0.525	0.603	0.057	1.159	0.512	0.084	0.050		0.138	0.005	4.677	15.712	0.045	0.052	0.307	0.142	0.173	0.160	9.877	9.400	0.087	0.032	0.407	0.374	0.258	0.385	0.422	nan	0.328	0.168	0.069	0.132	0.063	0.044	0.159	nan	0.545	0.488	0.024	1.244	0.021		0.084	4.677		0.022	0.021	0.026
4143	chr19	51305428	51309045	+	0	NA	intron (NM_001290149, intron 1 of 5)	intron (NM_001290149, intron 1 of 5)	575	NM_032712	84798	Hs.256301	NM_032712	ENSG00000167747	C19orf48	-	chromosome 19 open reading frame 48	protein-coding	5.755	3.910	7.480	6.435	10.426	6.458	4.989	2.823	0.423	3.801	1.598	6.316	9.328	6.019	0.201	9.186	7.685	7.556	9.799	10.661	12.407	11.791	8.925	18.588	19.849	5.735	7.571	10.312	14.438	14.864	14.661	12.245	18.199	8.987	11.012	9.690	8.637	5.585	3.090	2.246	6.013	1.968	2.211	4.989	6.316	1.719	2.677	4.500	3.044
8010	chr9	1047110	1062478	+	0	NA	intron (NM_181872, intron 3 of 3)	intron (NM_181872, intron 3 of 3)	4174	NM_181872	10655	Hs.59506	NM_006557	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding	0.348	2.104	1.501	0.573	0.202	0.115	1.082	0.044	0.063	0.051	0.075	0.346	1.053	0.057	0.085	0.217	0.191	0.807	0.667	1.445	1.264	0.126	0.069	11.600	11.284	0.839	1.330	0.915	1.121	0.913	0.891	0.228	0.461	0.071	0.071	0.045	nan	0.581	0.658	0.011	0.458	0.018	0.016	1.082	0.346	0.042	0.041	0.155	0.024
5837	chr4	15002199	15008165	+	0	NA	exon (NM_182485, exon 1 of 11)	exon (NM_182485, exon 1 of 11)	884	NM_001177381	132864	Hs.656937	NM_182485	ENSG00000137449	CPEB2	CPE-BP2|CPEB-2|hCPEB-2	cytoplasmic polyadenylation element binding protein 2	protein-coding	nan	nan	nan	5.231	1.510	0.810	4.938	5.323	0.756	4.128	1.320	2.921	14.451	1.234	0.099	1.239	3.338	5.988	8.086	4.386	4.009	8.735	3.301	5.538	5.125	1.256	1.434	2.248	3.932	2.277	2.641	0.333	0.720	4.860	3.483	3.298	4.587	nan	1.924	0.084	10.585	1.403	6.815	4.938	2.921	0.048	2.249	0.131	1.226
1674	chr11	116466260	116482489	+	0	NA	Intergenic	Intergenic	-35765	NR_135069	101929011	Hs.733911	NR_135069	ENSG00000237937	LOC101929011	-	uncharacterized LOC101929011	ncRNA	0.611	0.829	0.550	0.266	0.615	0.335	0.333	0.004	0.099	1.009	0.868	1.209	0.857	0.027	0.112	0.325	nan	0.093	0.175	0.745	0.886	1.692	0.409	0.112	0.099	0.761	nan	1.201	1.297	0.728	0.490	0.436	0.543	1.559	1.904	0.377	1.027	2.919	1.551	0.838	0.155	0.280	0.063	0.333	1.209	0.089	0.547	0.105	0.207
1065	chr10	21562806	21664678	+	0	NA	Intergenic	Intergenic	150511	NR_046284	100128511	Hs.635827	NR_046283	ENSG00000231920	NEBL-AS1	-	NEBL antisense RNA 1	ncRNA	0.578	0.768	0.531	0.096	0.394	0.225	0.116	0.527	0.307	0.088	0.083	0.156	0.292	5.350	0.246	0.387	0.276	0.408	1.439	0.204	0.241	1.482	0.446	0.148	0.161	0.146	0.323	0.369	0.368	0.201	0.116	0.109	0.165	0.253	0.293	0.206	0.364	0.414	0.331	0.019	0.076	0.031	0.058	0.116	0.156	0.041	0.084	0.037	0.046
5862	chr4	37528821	37545264	+	0	NA	intron (NM_001104629, intron 1 of 3)	intron (NM_001104629, intron 1 of 3)	-48813	NM_018302	55286	Hs.107527	NM_018302	ENSG00000154274	C4orf19	-	chromosome 4 open reading frame 19	protein-coding	0.555	0.425	0.480	0.099	0.164	0.107	0.124	0.073	0.134	0.168	0.157	0.059	0.190	0.039	0.091	0.589	0.613	2.714	5.799	0.146	0.236	0.084	0.088	0.342	0.403	0.615	0.753	0.179	0.205	0.424	0.126	0.408	0.874	0.071	0.040	0.117	0.247	0.722	0.779	0.017	0.140	0.023	0.114	0.124	0.059	0.006	0.030	0.270	0.107
4396	chr2	69951580	69984171	+	0	NA	intron (NM_001320698, intron 3 of 14)	AluJb|SINE|Alu	-1231	NM_001320702	307	Hs.422986	NM_001153	ENSG00000196975	ANXA4	ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36	annexin A4	protein-coding	1.011	0.753	nan	0.434	0.412	0.223	0.262	0.477	0.119	0.126	0.114	0.280	0.811	0.510	0.128	0.730	0.586	3.043	2.155	0.617	0.680	nan	0.275	5.459	5.510	1.123	1.468	0.929	1.138	0.634	0.406	1.435	2.656	0.248	0.250	0.498	0.862	0.427	0.378	0.037	0.219	0.038	0.098	0.262	0.280	0.074	0.115	2.426	0.302
84	chr1	11411714	11423307	+	0	NA	Intergenic	Intergenic	84255	NM_001330350	29914	Hs.522933	NM_013319	ENSG00000120942	UBIAD1	SCCD|TERE1	UbiA prenyltransferase domain containing 1	protein-coding	2.713	2.172	nan	0.528	1.759	0.985	4.530	0.109	0.144	0.068	0.119	0.269	2.124	0.062	0.124	0.881	1.954	0.178	0.164	3.202	2.805	0.937	0.335	0.197	nan	2.345	nan	0.865	1.689	nan	3.381	0.273	0.514	1.158	0.645	0.783	1.304	0.416	0.599	2.994	0.259	0.571	0.264	4.530	0.269	1.176	0.035	0.350	0.192
6002	chr4	117234508	117322224	+	0	NA	Intergenic	Intergenic	57485	NR_031737	100302290		NR_031737	ENSG00000270394	MIR1973	hsa-mir-1973|mir-1973	microRNA 1973	ncRNA	0.510	0.681	0.495	0.124	0.183	0.088	0.076	0.080	0.075	0.075	0.083	0.090	0.210	0.019	0.076	0.216	0.130	0.135	0.215	0.120	0.154	0.258	0.081	0.114	0.134	7.744	8.739	0.316	0.258	0.327	0.147	0.115	0.198	0.145	0.214	0.236	0.539	0.302	0.249	0.008	0.027	0.023	0.030	0.076	0.090	0.010	0.064	0.027	0.117
4068	chr19	41194611	41201065	+	0	NA	3' UTR (NM_024876, exon 15 of 15)	3' UTR (NM_024876, exon 15 of 15)	-1275	NM_004756	9253	Hs.326953	NM_004756	ENSG00000105245	NUMBL	CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23	NUMB like, endocytic adaptor protein	protein-coding	4.249	1.702	9.326	0.855	1.256	0.795	2.335	1.318	0.192	1.292	0.689	2.050	8.308	3.012	0.127	2.344	3.069	2.191	3.494	8.642	7.385	4.013	1.188	7.043	7.725	3.481	4.414	3.727	6.527	8.950	11.011	1.304	1.632	3.088	3.403	6.402	8.680	3.441	1.597	4.408	2.672	0.767	1.242	2.335	2.050	1.561	3.369	0.534	4.052
437	chr1	108165134	108173330	+	0	NA	intron (NM_006113, intron 20 of 26)	intron (NM_006113, intron 20 of 26)	61894	NM_001079874	10451	Hs.267659	NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding	1.130	nan	nan	0.121	0.246	0.123	0.187	5.072	0.532	0.019	0.102	0.106	0.432	0.054	0.104	0.183	0.203	0.248	0.490	0.258	nan	1.211	0.507	0.276	0.294	5.453	6.237	nan	nan	0.415	0.178	0.114	0.277	0.290	0.219	0.275	nan	0.432	0.435	0.193	0.076	0.035	0.020	0.187	0.106	0.012	0.037	0.048	0.121
2749	chr14	95909108	95945434	+	0	NA	intron (NM_152592, intron 3 of 16)	intron (NM_152592, intron 3 of 16)	14902	NM_152592	161176	Hs.41502	NM_024633	ENSG00000176438	SYNE3	C14orf139|C14orf49|LINC00341|NCRNA00341|NET53|Nesp3	spectrin repeat containing nuclear envelope family member 3	protein-coding	1.107	1.219	nan	3.462	1.661	0.856	0.769	0.212	0.116	0.334	0.293	2.668	4.439	0.072	0.099	1.019	1.398	0.215	0.271	3.731	3.996	2.345	0.618	0.681	0.670	0.347	0.710	2.054	1.617	0.600	0.448	0.708	0.897	0.682	0.767	0.325	0.500	nan	0.857	2.696	0.382	0.120	0.094	0.769	2.668	0.125	0.190	0.496	0.082
1768	chr12	3202076	3226411	+	0	NA	intron (NM_006675, intron 2 of 8)	intron (NM_006675, intron 2 of 8)	27722	NM_006675	10867	Hs.504517	NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding	1.504	nan	nan	0.251	0.237	0.125	0.491	0.622	0.198	0.162	0.191	0.158	1.019	0.092	0.100	0.310	0.323	0.259	0.367	nan	0.627	0.690	0.292	0.318	0.356	0.886	1.460	0.374	0.597	2.260	1.977	0.311	0.280	0.512	0.476	1.916	nan	1.300	0.882	0.550	0.151	0.161	0.059	0.491	0.158	0.411	0.070	0.033	2.055
6429	chr5	123381159	123398386	+	0	NA	Intergenic	Intergenic	384441	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA	nan	1.186	0.858	0.214	1.007	0.771	0.193	0.429	0.121	0.201	0.244	0.280	1.189	0.176	0.146	0.373	0.296	2.311	6.087	0.382	0.494	1.551	0.407	0.417	0.385	0.285	0.591	0.691	0.450	0.575	0.358	0.107	0.429	0.737	0.641	0.511	1.166	0.542	0.376	0.225	0.135	0.182	0.087	0.193	0.280	0.040	0.123	0.213	0.259
8015	chr9	2254048	2270782	+	0	NA	Intergenic	MIRc|SINE|MIR	103959	NM_001289400	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.897	1.660	0.989	0.438	0.668	0.307	1.596	0.077	0.049	1.224	0.448	1.540	1.676	0.032	0.113	0.258	0.183	0.216	0.398	0.919	1.116	3.711	1.507	0.233	0.246	1.042	1.736	1.555	1.003	0.437	0.302	0.215	0.272	0.487	0.580	0.248	nan	4.438	2.340	1.544	1.697	0.086	0.047	1.596	1.540	0.168	0.127	0.053	0.052
8309	chr9	135416524	135425440	+	0	NA	intron (NM_207417, intron 6 of 6)	intron (NM_207417, intron 6 of 6)	-37011	NM_020064	56751	Hs.283809	NM_020064	ENSG00000125492	BARHL1	-	BarH like homeobox 1	protein-coding	nan	0.690	1.286	0.806	0.598	0.215	1.484	0.093	0.054	0.352	0.283	0.831	1.001	0.049	0.083	1.227	1.882	0.371	0.557	1.743	1.596	nan	0.095	0.281	0.338	0.790	0.896	0.687	1.235	1.562	1.513	0.910	0.919	6.455	6.060	0.903	1.625	1.428	0.836	0.275	0.109	1.880	1.477	1.484	0.831	0.980	0.172	0.999	0.264
6781	chr6	44204746	44219539	+	0	NA	Intergenic	Intergenic	-1761	NM_001271970	3326	Hs.509736	NM_007355	ENSG00000096384	HSP90AB1	D6S182|HSP84|HSP90B|HSPC2|HSPCB	heat shock protein 90 alpha family class B member 1	protein-coding	3.414	1.933	2.467	2.414	3.254	1.659	2.769	1.105	0.245	1.381	0.858	2.943	5.653	2.054	0.161	3.013	4.025	2.374	3.196	4.823	4.694	8.558	4.493	7.722	8.236	1.498	2.198	5.320	nan	5.923	5.975	3.653	6.607	2.849	3.535	5.051	5.842	2.309	1.399	1.716	1.937	0.342	1.227	2.769	2.943	0.859	1.595	1.162	1.738
1021	chr10	12506794	12529152	+	0	NA	intron (NM_020397, intron 1 of 9)	intron (NM_020397, intron 1 of 9)	-102779	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA	nan	1.169	0.606	2.338	1.265	0.660	0.636	0.193	0.124	0.992	0.533	2.036	1.751	0.067	0.094	0.457	0.439	0.237	0.443	1.385	1.299	4.939	1.836	0.146	0.109	0.572	0.947	4.697	5.156	0.483	0.424	0.233	0.334	0.927	1.001	0.185	0.479	0.865	0.531	0.722	1.663	0.174	0.247	0.636	2.036	0.301	1.185	0.164	0.160
6325	chr5	72732670	72750511	+	0	NA	TTS (NM_004472)	TTS (NM_004472)	2762	NM_004472	2297	Hs.519385	NM_004472	ENSG00000251493	FOXD1	FKHL8|FREAC-4|FREAC4	forkhead box D1	protein-coding	2.116	nan	1.183	3.266	1.537	0.704	1.686	0.661	0.137	0.393	0.203	1.795	2.938	1.823	0.150	1.474	1.871	1.151	1.452	2.016	1.539	nan	2.838	0.440	0.513	0.799	nan	1.283	1.841	1.955	2.275	1.529	2.637	0.895	0.574	0.744	0.896	0.743	0.570	0.728	1.822	0.107	0.840	1.686	1.795	0.153	0.186	0.789	0.201
5094	chr21	33971250	33986230	+	0	NA	intron (NR_036552, intron 2 of 5)	intron (NR_036552, intron 2 of 5)	6173	NR_036552	56683	Hs.5811	NM_017835	ENSG00000159079	C21orf59	C21orf48|CILD26|FBB18|Kur	chromosome 21 open reading frame 59	protein-coding	1.841	1.095	8.072	1.887	1.079	0.461	1.817	0.578	0.118	0.781	0.461	1.250	5.942	0.992	0.105	1.552	2.926	1.726	2.183	7.524	7.720	4.420	1.132	2.004	1.811	1.145	1.724	1.883	3.706	3.856	4.584	0.755	1.665	2.622	1.768	1.670	1.979	nan	1.336	1.408	1.222	0.649	2.154	1.817	1.250	1.069	0.610	0.534	0.504
6595	chr6	5748311	5754668	+	0	NA	intron (NM_006567, intron 6 of 6)	intron (NM_006567, intron 6 of 6)	-55984	NR_110842	101927950	Hs.571136	NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA	1.570	0.750	1.212	0.684	0.882	0.253	1.169	1.546	0.128	0.125	0.141	0.847	0.142	0.105	0.080	0.444	0.436	0.192	0.528	0.496	0.300	2.166	0.254	0.544	0.364	1.350	1.302	1.996	2.192	1.463	1.083	0.251	0.324	0.147	0.487	2.550	5.597	0.707	0.728	0.244	0.098	0.106	0.588	1.169	0.847	0.320	5.386	0.062	1.843
4212	chr2	10259547	10267250	+	0	NA	intron (NM_001165931, intron 2 of 9)	CpG-14708	535	NM_001034	6241	Hs.226390	NM_001034	ENSG00000171848	RRM2	R2|RR2|RR2M	ribonucleotide reductase regulatory subunit M2	protein-coding	5.915	2.689	4.761	6.271	6.166	2.811	4.942	2.689	0.397	3.714	1.562	5.621	18.285	5.939	0.273	6.012	4.235	6.585	8.946	7.096	5.664	7.484	4.151	5.179	5.023	4.472	6.233	8.844	nan	7.713	9.150	2.175	4.410	4.979	5.933	7.866	nan	2.770	1.425	5.047	7.445	1.164	4.789	4.942	5.621	2.145	3.619	1.756	2.720
934	chr1	234913757	234919870	+	0	NA	Intergenic	Intergenic	57024	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA	3.840	2.748	3.539	0.872	0.844	0.541	0.623	0.440	0.266	0.581	0.565	0.718	1.038	0.186	0.345	1.277	1.116	0.592	1.573	1.897	1.924	nan	0.483	1.190	1.224	1.075	1.926	nan	1.579	1.876	1.197	0.656	0.757	0.256	0.265	3.113	7.744	nan	2.071	0.199	0.232	0.032	0.325	0.623	0.718	0.414	0.099	0.125	7.804
6451	chr5	133557501	133563587	+	0	NA	promoter-TSS (NR_037434)	promoter-TSS (NR_037434)	-904	NR_037434	100500905		NR_037434	ENSG00000266751	MIR3661	mir-3661	microRNA 3661	ncRNA	4.475	4.542	nan	3.087	4.817	3.146	2.124	2.353	0.263	2.204	0.910	5.303	5.742	3.440	0.182	3.206	3.264	6.862	10.320	7.395	5.864	6.674	4.117	17.014	17.763	4.188	4.587	4.913	8.993	7.577	7.497	2.388	5.153	6.041	7.819	5.090	5.468	2.671	1.130	2.163	4.420	1.044	2.407	2.124	5.303	0.833	2.887	1.300	1.350
5990	chr4	111943524	111952518	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-384742	NM_001204398	5308	Hs.643588	NM_000325	ENSG00000164093	PITX2	ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired like homeodomain 2	protein-coding	0.647	0.652	0.517	0.079	0.233	0.090	0.014	0.102	0.090	0.030	0.062	0.063	0.226	0.023	0.126	0.762	0.352	9.372	0.908	0.119	0.176	0.079	0.041	0.473	0.501	0.250	0.276	0.238	0.255	0.193	0.043	0.194	0.360	0.032	0.095	0.388	0.751	0.113	0.206	0.006	0.030		0.008	0.014	0.063	0.033		0.071	0.072
3537	chr17	71777461	71825230	+	0	NA	intron (NR_027146, intron 2 of 3)	intron (NR_027146, intron 2 of 3)	18384	NR_040020	400620	Hs.348644	NR_040020	ENSG00000234721	LINC02092	-	long intergenic non-protein coding RNA 2092	ncRNA	1.139	1.487	1.169	0.354	7.736	3.962	1.817	0.116	0.141	0.989	0.407	3.122	1.953	0.068	0.104	1.783	2.672	0.672	0.567	2.706	3.085	2.191	0.598	0.136	0.169	nan	0.736	2.181	1.771	0.881	0.419	1.068	2.053	0.655	0.449	0.579	1.408	nan	1.127	0.433	0.945	0.077	0.407	1.817	3.122	0.063	0.344	1.697	0.148
4821	chr20	5097627	5101593	+	0	NA	promoter-TSS (NR_028370)	promoter-TSS (NR_028370)	-622	NR_028370	100302739	Hs.744934	NR_028370		PCNA-AS1	PCNA-AS|PCNAAS	PCNA antisense RNA 1	ncRNA	9.276	7.900	4.337	8.512	5.888	3.278	3.419	2.038	0.075	3.414	1.360	4.891	15.290	2.396	0.174	13.988	12.051	7.220	8.729	13.356	10.882	11.325	8.643	11.104	10.632	6.081	7.119	12.601	17.948	14.261	16.041	7.303	12.788	10.586	11.186	11.303	8.791	4.288	2.316	4.718	6.127	1.750	2.114	3.419	4.891	1.447	3.866	2.321	2.869
948	chr1	241997703	242012737	+	0	NA	Intergenic	Intergenic	-6273	NM_001319224	9156	Hs.498248	NM_003686	ENSG00000174371	EXO1	HEX1|hExoI	exonuclease 1	protein-coding	nan	2.215	nan	2.282	1.811	0.856	1.089	0.458	0.118	0.928	0.421	2.101	3.394	0.748	0.125	1.286	1.174	2.109	3.188	3.508	3.305	3.796	1.815	2.280	2.432	1.001	1.353	2.042	2.365	1.674	1.640	0.327	0.709	1.216	1.382	1.372	1.730	3.543	1.620	0.410	0.716	0.251	0.941	1.089	2.101	0.246	0.508	0.191	0.449
8239	chr9	112104284	112120091	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-28943	NM_019114	54566	Hs.591901	NM_018424	ENSG00000095203	EPB41L4B	CG1|EHM2	erythrocyte membrane protein band 4.1 like 4B	protein-coding	0.681	1.265	nan	1.229	0.370	0.187	0.462	0.110	0.112	0.230	0.105	0.882	1.139	0.014	0.079	0.248	0.390	0.538	1.206	0.612	0.573	5.003	1.484	1.012	0.956	0.136	0.309	1.694	nan	0.940	0.660	0.246	0.420	0.591	0.646	0.235	0.509	nan	0.585	0.501	0.080	0.042	0.131	0.462	0.882	0.086	0.116	0.169	0.086
8361	chrUn_gl000220	88306	105799	+	0	NA	promoter-TSS (NR_038958)	promoter-TSS (NR_038958)	-77	NR_038958	100507412	Hs.426704	NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA	nan	nan	6.021	2.018	nan	2.197	7.682	2.450	3.761	1.721	nan	1.423	8.577	1.372	1.385	3.329	1.919	7.793	11.493	4.702	5.720	1.331	0.519	3.642	3.309	2.328	4.457	1.168	1.323	nan	1.927	2.665	3.828	2.497	nan	1.687	nan	2.302	3.629	5.700	1.126	0.787	0.841	7.682	1.423	0.401	1.829	1.047	0.382
6827	chr6	56769535	56787714	+	0	NA	intron (NM_001144769, intron 2 of 96)	intron (NM_001144769, intron 2 of 96)	40802	NM_001144769	667	Hs.604915	NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding	2.120	0.803	nan	0.130	0.126	0.070	0.307	0.433	0.106	0.069	0.104	0.059	0.412	0.080	0.112	0.384	0.271	0.338	0.574	0.292	0.280	0.640	0.245	0.268	0.324	3.364	4.213	0.591	0.596	1.924	1.351	0.193	0.228	0.135	0.239	0.342	0.562	0.602	0.593	0.039	0.060	0.063	0.026	0.307	0.059	0.106	0.078	0.049	0.183
226	chr1	38313482	38329224	+	0	NA	intron (NM_005955, intron 2 of 10)	AluSq|SINE|Alu	3939	NM_005955	4520	Hs.471991	NM_005955	ENSG00000188786	MTF1	MTF-1|ZRF	metal regulatory transcription factor 1	protein-coding	1.896	nan	1.473	2.333	1.118	0.529	0.591	0.607	0.205	0.526	0.479	1.050	2.338	0.912	0.162	0.787	1.043	0.874	1.482	1.946	1.914	nan	0.578	1.838	1.934	1.750	2.291	7.468	8.438	nan	1.513	1.274	1.997	0.639	0.596	1.764	2.319	1.124	nan	0.466	0.600	0.031	0.349	0.591	1.050	0.265	0.389	0.452	0.515
4296	chr2	39345849	39352823	+	0	NA	Intergenic	AluSq|SINE|Alu	-1732	NM_005633	6654	Hs.709893	NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	4.542	nan	nan	6.208	4.632	2.785	4.160	1.896	0.303	4.214	1.740	6.167	8.633	5.007	0.200	6.787	7.491	7.899	11.753	11.061	8.594	11.987	5.238	9.615	nan	3.952	5.850	8.828	12.143	nan	6.672	3.753	7.006	2.257	1.880	6.586	8.159	4.294	2.396	3.723	6.854	0.570	2.490	4.160	6.167	1.564	3.619	2.268	3.960
4982	chr20	47331867	47358172	+	0	NA	intron (NM_020820, intron 4 of 39)	intron (NM_020820, intron 4 of 39)	99401	NM_020820	57580	Hs.153310	NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding	nan	nan	0.566	0.114	0.228	0.176	0.272	0.217	0.098	0.150	0.125	0.114	0.562	0.128	0.086	3.440	4.622	1.318	0.712	0.436	0.480	nan	0.437	0.634	0.589	0.955	1.449	0.632	0.770	nan	2.249	1.858	2.477	0.176	0.218	0.390	0.762	0.795	0.746	0.101	0.332	0.044	0.392	0.272	0.114	0.641	0.409	1.658	0.235
1430	chr11	59521219	59535318	+	0	NA	intron (NM_004177, intron 1 of 10)	MIRc|SINE|MIR	5736	NM_004177	6809	Hs.180711	NM_004177	ENSG00000166900	STX3	STX3A	syntaxin 3	protein-coding	0.946	1.302	1.111	0.959	0.682	0.284	0.162	0.814	0.104	0.379	0.216	0.723	3.053	0.292	0.143	0.822	1.192	1.724	2.137	1.338	1.292	1.908	0.628	1.102	0.967	0.669	1.040	1.676	2.465	4.229	4.001	0.691	1.347	0.900	1.080	2.313	7.078	0.850	0.556	0.695	1.080	0.142	0.292	0.162	0.723	0.171	0.373	0.358	2.185
7473	chr7	129353992	129369883	+	0	NA	intron (NM_001040110, intron 9 of 10)	intron (NM_001040110, intron 9 of 10)	48395	NR_029614	406958		NR_029614	ENSG00000207990	MIR182	MIRN182|miRNA182|mir-182	microRNA 182	ncRNA	1.068	0.664	0.953	1.272	1.178	0.525	0.274	0.249	0.081	0.404	0.252	1.687	0.610	0.116	0.145	0.760	0.749	0.348	0.419	0.872	1.146	4.837	1.563	0.487	0.382	0.450	0.610	1.648	1.283	0.423	0.230	0.493	0.831	0.897	1.477	0.397	0.935	1.545	1.000	0.115	0.447	0.096	0.649	0.274	1.687	0.595	0.659	0.205	0.202
1145	chr10	74067856	74097276	+	0	NA	Intergenic	Intergenic	32341	NM_001002762	54788	Hs.500013	NM_017626	ENSG00000148719	DNAJB12	DJ10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	2.588	nan	1.863	1.607	7.657	3.930	2.127	1.913	0.359	1.705	0.941	3.849	4.192	0.355	0.077	2.718	3.717	1.048	2.375	4.605	3.847	4.011	1.499	3.013	3.316	0.494	0.852	5.940	nan	1.960	2.172	2.028	2.852	2.466	2.028	1.123	nan	1.726	0.924	3.543	3.932	0.870	1.855	2.127	3.849	0.546	1.418	3.010	0.716
3229	chr17	812341	824976	+	0	NA	intron (NM_022463, intron 1 of 7)	AluJb|SINE|Alu	5786	NR_135633	101927727	Hs.666198	NR_135633	ENSG00000262003	LOC101927727	-	uncharacterized LOC101927727	ncRNA	1.336	1.249	0.999	1.041	1.254	0.556	1.785	0.571	0.289	0.285	0.190	3.367	2.028	0.104	0.068	0.282	0.164	1.389	2.835	6.254	6.512	0.386	0.152	0.099	0.098	0.251	0.376	0.088	0.091	0.466	0.214	0.157	0.202	0.422	0.375	0.415	0.892	1.412	0.849	2.887	1.964	0.044	0.541	1.785	3.367	0.100	0.457	0.039	0.312
2466	chr13	113854180	113880280	+	0	NA	intron (NM_001008895, intron 2 of 19)	L1MEc|LINE|L1	3411	NM_001008895	8451	Hs.339735	NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding	1.873	nan	1.832	2.073	1.691	0.921	3.234	0.797	0.173	0.522	0.262	1.911	2.178	0.768	0.098	3.296	3.221	1.567	2.587	2.773	2.376	2.761	1.225	2.339	2.425	0.387	0.608	2.616	4.177	1.611	2.074	1.681	2.620	2.515	3.045	1.809	1.739	0.488	0.324	2.161	2.897	0.532	2.721	3.234	1.911	0.645	0.882	0.775	0.602
62	chr1	8720488	8793576	+	0	NA	intron (NM_001042681, intron 1 of 22)	intron (NM_001042681, intron 1 of 22)	120667	NM_012102	473	Hs.463041	NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding	1.928	nan	1.983	10.302	1.141	0.552	0.623	1.001	0.203	0.784	0.545	0.765	2.483	1.895	0.184	0.924	0.816	0.890	1.999	2.650	2.409	1.818	0.658	1.861	1.833	2.746	nan	nan	8.113	nan	1.980	0.772	1.289	0.844	1.295	2.261	4.396	1.592	0.938	1.065	0.913	0.208	0.655	0.623	0.765	0.281	0.565	0.656	1.107
8209	chr9	96328887	96365165	+	0	NA	intron (NM_005392, intron 1 of 21)	L1MB5|LINE|L1	8117	NM_005392	5253	Hs.211441	NM_005392	ENSG00000197724	PHF2	CENP-35|GRC5|JHDM1E|KDM7C	PHD finger protein 2	protein-coding	1.179	nan	1.633	3.801	1.234	0.601	0.903	0.450	0.102	1.507	0.602	1.632	1.864	0.497	0.079	0.855	1.120	1.486	nan	2.752	2.784	3.002	1.283	1.245	1.103	0.486	0.785	4.002	5.473	1.876	1.827	0.620	1.133	1.974	1.863	0.594	0.559	1.912	1.081	0.518	0.608	0.501	0.430	0.903	1.632	0.568	0.610	0.215	0.212
6749	chr6	37519221	37547017	+	0	NA	Intergenic	Intergenic	-9921	NR_039669	100616413		NR_039669	ENSG00000263926	MIR4462	-	microRNA 4462	ncRNA	nan	0.787	nan	0.152	0.517	0.267	2.685	0.110	0.082	0.221	0.119	0.793	1.081	0.109	0.095	0.576	0.871	0.236	nan	nan	1.386	1.314	0.366	0.390	0.392	1.972	2.410	0.604	0.730	1.336	1.096	0.373	0.445	0.297	0.255	1.262	3.347	1.536	0.968	0.303	0.366	0.076	0.151	2.685	0.793	0.430	0.168	0.117	0.543
7427	chr7	107832208	107854988	+	0	NA	intron (NM_001037132, intron 10 of 29)	intron (NM_001037132, intron 10 of 29)	37016	NM_001037132	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding	nan	1.082	1.305	0.999	0.352	0.183	0.711	0.140	0.105	0.274	0.216	0.811	1.028	0.070	0.152	0.423	0.333	0.311	0.600	0.816	0.809	5.135	1.037	0.562	0.589	0.336	0.514	2.604	2.277	0.509	0.332	0.655	0.940	0.981	2.148	0.538	nan	1.606	1.047	0.994	1.083	0.117	0.528	0.711	0.811	0.301	0.410	0.853	0.155
4794	chr2	242252195	242258153	+	0	NA	promoter-TSS (NM_001321035)	promoter-TSS (NM_001321035)	83	NM_005336	3069	Hs.471851	NM_005336	ENSG00000115677	HDLBP	HBP|PRO2900|VGL	high density lipoprotein binding protein	protein-coding	5.838	nan	4.337	4.414	4.782	2.768	3.885	1.896	0.277	2.171	0.963	5.258	9.333	4.762	0.153	7.761	6.896	6.541	9.300	5.788	5.663	5.622	3.593	17.546	19.480	4.312	5.701	6.619	10.874	9.056	8.538	7.002	10.779	3.843	4.485	9.579	7.561	2.138	1.155	4.565	3.284	0.574	1.720	3.885	5.258	0.766	2.407	2.895	2.557
6719	chr6	33747237	33766263	+	0	NA	exon (NM_181336, exon 1 of 9)	exon (NM_181336, exon 1 of 9)	156	NM_181336	221496	Hs.444845	NM_181336	ENSG00000161904	LEMD2	CTRCT42|NET25|dJ482C21.1	LEM domain containing 2	protein-coding	nan	1.899	nan	1.286	0.980	0.445	2.022	0.624	0.109	0.403	0.176	1.833	2.116	0.565	0.111	1.388	1.514	1.384	nan	nan	2.568	1.926	1.040	2.186	2.085	0.867	1.405	3.383	4.327	1.657	1.634	0.904	1.373	0.988	1.264	1.391	2.151	1.322	0.762	4.542	1.199	0.228	0.557	2.022	1.833	0.332	0.717	0.214	0.841
6505	chr5	148520187	148543141	+	0	NA	intron (NM_014945, intron 2 of 23)	MER102a|DNA|hAT-Charlie	10654	NM_001345860	22885	Hs.49688	NM_014945	ENSG00000173210	ABLIM3	HMFN1661	actin binding LIM protein family member 3	protein-coding	nan	1.450	0.701	0.114	0.575	0.321	0.146	0.192	0.077	0.143	0.103	0.062	6.575	0.066	0.108	0.293	0.253	0.231	0.322	0.943	0.820	0.169	0.067	0.084	0.075	0.335	0.611	2.652	2.154	2.547	2.530	0.471	0.422	0.171	0.583	0.292	0.897	0.716	0.567	1.248	4.913	0.113	0.028	0.146	0.062	0.297	1.197	0.155	0.145
3697	chr18	24387247	24396038	+	0	NA	Intergenic	AluSx3|SINE|Alu	51232	NM_004028	361	Hs.315369	NM_001650	ENSG00000171885	AQP4	MIWC|WCH4	aquaporin 4	protein-coding	0.662	0.881	0.737	0.119	0.238	0.036	0.460	0.076	0.054	0.053	0.123	0.014	0.325	0.012	0.082	0.448	0.318	8.211	nan	0.414	0.490	2.034	0.563	0.251	0.218	0.096	0.243	0.277	0.160	0.342	0.140	0.127	0.182	0.178	0.371	0.229	0.593	1.274	1.311	0.013	0.050	0.043	0.082	0.460	0.014		0.023	0.078	0.028
3466	chr17	55358194	55394525	+	0	NA	intron (NM_170721, intron 4 of 9)	Tigger1|DNA|TcMar-Tigger	41985	NM_170721	124540	Hs.658922	NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding	1.678	1.420	1.000	1.615	6.708	3.471	0.872	0.154	0.088	2.075	0.983	3.939	2.998	0.075	0.106	1.571	2.219	0.656	1.112	2.660	2.969	4.072	1.372	nan	0.663	0.796	1.165	nan	nan	1.378	1.332	0.494	0.906	2.511	3.525	0.646	1.515	2.736	1.230	1.825	1.675	0.783	0.973	0.872	3.939	0.364	0.765	0.349	1.033
1999	chr12	65059388	65086866	+	0	NA	intron (NR_040718, intron 1 of 3)	AluSg|SINE|Alu	-56742	NR_037515	100500856		NR_037515	ENSG00000266016	MIR548Z	-	microRNA 548z	ncRNA	1.226	0.942	1.464	1.098	0.538	0.333	2.195	1.346	0.387	1.058	0.717	1.589	4.258	0.111	0.072	0.352	0.403	0.472	1.266	2.483	nan	2.432	0.537	0.412	0.467	1.164	1.763	3.264	3.286	0.872	0.525	0.273	0.367	3.268	4.703	0.373	0.821	2.877	1.437	0.150	0.239	1.397	0.963	2.195	1.589	0.444	2.259	0.097	0.410
3632	chr18	656026	660036	+	0	NA	exon (NM_001012716, exon 1 of 2)	exon (NM_001012716, exon 1 of 2)	309	NM_001012716	494514	Hs.274959	NM_001012716		TYMSOS	C18orf56	TYMS opposite strand	protein-coding	6.947	5.266	4.226	7.445	8.364	3.997	3.136	1.625	0.751	2.334	1.698	21.270	17.171	6.034	0.334	6.361	7.099	6.133	8.941	12.432	9.343	11.298	5.690	13.369	12.215	2.546	nan	8.417	11.550	nan	6.876	2.347	4.649	12.078	13.160	4.677	nan	nan	1.810	6.914	4.306	3.489	6.504	3.136	21.270	1.313	2.907	1.875	2.442
6030	chr4	140832346	140847640	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	235240	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding	1.519	1.222	1.211	0.865	3.743	2.023	0.473	0.789	0.064	1.064	0.548	2.553	2.291	0.028	0.098	0.313	0.566	0.816	0.439	1.002	1.241	3.527	1.264	0.123	0.122	4.047	4.841	1.041	1.325	0.947	0.647	0.682	2.209	1.328	1.056	1.404	3.916	1.674	0.807	1.282	0.660	0.430	0.402	0.473	2.553	0.419	0.586	2.564	1.661
6953	chr6	126109951	126166864	+	0	NA	intron (NM_001199621, intron 2 of 14)	L1MD2|LINE|L1	1597	NR_126386	104355145	Hs.590370	NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA	1.569	1.099	1.110	0.790	3.075	1.545	0.773	1.349	0.189	0.303	0.212	0.681	1.208	0.419	0.125	1.176	1.495	0.566	1.427	1.301	1.292	2.058	0.906	0.802	0.850	0.862	1.071	0.718	0.908	1.110	0.958	0.678	1.044	2.330	2.375	0.516	0.952	0.747	0.518	1.677	1.505	0.742	0.224	0.773	0.681	0.281	0.314	0.822	0.295
5969	chr4	91047418	91068584	+	0	NA	intron (NM_001145065, intron 1 of 10)	intron (NM_001145065, intron 1 of 10)	9317	NM_001145065	401145	Hs.654735	NM_207491	ENSG00000184305	CCSER1	FAM190A	coiled-coil serine rich protein 1	protein-coding	0.952	1.240	1.319	0.566	1.875	0.796	0.097	0.067	0.093	0.572	0.389	0.141	2.015	0.031	0.100	5.316	5.399	6.008	4.618	1.012	0.894	0.090	0.029	7.758	7.921	2.397	2.913	0.694	1.193	2.130	2.042	1.796	3.240	1.898	2.704	1.132	1.681	0.322	0.338	0.180	0.765	0.432	0.405	0.097	0.141	0.057	0.168	1.311	0.390
7968	chr8	142185001	142219754	+	0	NA	intron (NM_014957, intron 20 of 22)	intron (NM_014957, intron 20 of 22)	36296	NM_001080431	57210	Hs.372492	NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding	1.521	1.287	nan	0.618	0.507	0.272	0.262	0.198	0.133	0.122	0.126	0.293	1.337	0.093	0.071	0.342	0.461	0.311	0.396	nan	1.026	nan	0.337	0.727	0.735	0.296	0.529	2.109	3.606	0.680	0.537	0.448	0.683	0.420	0.419	0.323	0.567	0.667	0.480	2.751	3.254	0.063	0.144	0.262	0.293	0.165	0.175	0.115	0.173
6082	chr4	175181183	175208413	+	0	NA	intron (NM_012180, intron 1 of 5)	L1MC4|LINE|L1	-10030	NM_001040157	80817	Hs.555989	NM_030633	ENSG00000164118	CEP44	KIAA1712|PS1TP3	centrosomal protein 44	protein-coding	nan	nan	1.188	1.164	0.911	0.561	0.273	0.618	0.077	0.881	0.404	0.791	1.261	0.482	0.070	0.902	0.787	1.439	nan	1.503	1.865	5.189	2.867	1.566	1.654	1.114	1.302	1.327	1.694	4.170	3.418	0.718	1.146	1.721	1.777	1.435	1.816	0.706	0.447	0.253	0.351	0.241	0.695	0.273	0.791	0.415	0.216	0.302	0.493
7907	chr8	124395395	124431003	+	0	NA	Intergenic	Intergenic	-4494	NM_014109	29028	Hs.370834	NM_014109	ENSG00000156802	ATAD2	ANCCA|CT137|PRO2000	ATPase family, AAA domain containing 2	protein-coding	nan	nan	nan	2.100	1.689	0.850	0.808	0.924	0.298	0.507	0.234	1.584	nan	0.634	0.113	1.244	1.194	1.538	2.114	3.043	2.902	4.075	1.967	nan	nan	1.323	1.744	1.372	2.161	1.759	1.610	1.249	1.912	1.695	2.540	1.684	1.978	1.583	0.770	1.368	1.151	0.469	0.595	0.808	1.584	0.296	0.719	0.526	0.527
6812	chr6	52970186	52990001	+	0	NA	Intergenic	MER34A|LTR|ERV1	33531	NM_003643	8521	Hs.23589	NM_003643	ENSG00000137270	GCM1	GCMA|hGCMa	glial cells missing homolog 1	protein-coding	1.508	1.795	nan	0.440	0.334	0.210	0.227	0.166	0.057	0.367	0.125	0.520	0.465	0.077	0.150	0.470	0.447	5.623	3.953	0.367	0.419	4.490	1.210	0.401	0.402	0.196	0.452	3.381	3.145	0.465	0.286	0.245	0.429	3.674	4.097	0.458	1.008	1.512	0.912	0.049	0.086	1.207	0.181	0.227	0.520	0.025	0.632	0.183	0.189
5808	chr3	196714868	196768437	+	0	NA	intron (NM_005929, intron 9 of 15)	L1MA5A|LINE|L1	11875	NR_038285	100507057	Hs.666451	NR_038285	ENSG00000228109	MELTF-AS1	MFI2-AS1	MELTF antisense RNA 1	ncRNA	nan	1.914	1.078	0.714	1.113	0.584	0.778	0.301	0.187	0.400	0.259	0.961	nan	0.291	0.080	1.226	1.121	1.269	1.895	2.302	2.012	2.193	0.940	4.214	4.312	0.769	1.203	2.550	3.757	1.634	1.354	1.682	2.767	0.741	0.743	0.702	0.880	1.377	0.956	3.047	0.835	0.136	0.540	0.778	0.961	0.337	0.284	1.431	0.288
2046	chr12	81076464	81080515	+	0	NA	Intergenic	Intergenic	-22919	NM_002469	4618	Hs.35937	NM_002469	ENSG00000111046	MYF6	CNM3|MRF4|bHLHc4|myf-6	myogenic factor 6	protein-coding	0.884	0.771	0.633	0.088	0.838	0.593		0.182	0.093	0.620	0.340	0.587	0.224	0.028	0.079	3.559	3.352	1.934	0.896	0.402	0.498	0.261	0.136	0.323	0.449	0.357	0.464	3.315	3.695	0.241	0.078	0.156	0.212	9.579	12.972	0.262	0.488	0.527	0.472	0.027	0.066	1.533	0.020		0.587		0.025	0.125	
7985	chr8	143472146	143495052	+	0	NA	intron (NM_001291931, intron 1 of 10)	intron (NM_001291931, intron 1 of 10)	1011	NM_001291931	203062	Hs.370931	NM_145003	ENSG00000171045	TSNARE1	-	t-SNARE domain containing 1	protein-coding	1.712	0.903	nan	0.941	0.790	0.468	0.571	0.111	0.091	0.240	0.154	1.507	2.738	0.304	0.056	1.302	1.831	0.488	0.659	nan	3.335	nan	0.421	1.093	0.980	0.562	0.876	1.335	1.998	0.800	0.745	0.902	1.352	0.970	1.048	0.525	0.598	0.920	0.736	4.983	0.962	0.187	0.243	0.571	1.507	0.476	0.737	0.453	0.184
6302	chr5	69574316	69628893	+	0	NA	intron (NR_027386, intron 3 of 5).2	intron (NR_027386, intron 3 of 5).2	-15600	NR_029426	11039	Hs.582500	NM_006780		SMA4	SMA3|b55C20.2	glucuronidase beta pseudogene	pseudo	0.745	1.686	0.618	0.663	0.627	0.315	0.779	0.157	0.071	1.386	1.019	0.467	1.863	0.268	0.128	0.732	0.691	0.658	1.032	1.033	1.044	4.032	1.964	0.716	0.680	2.236	2.371	1.046	1.364	0.804	0.639	0.164	0.337	3.084	4.628	0.252	0.372	2.697	1.537	0.218	0.712	2.589	0.467	0.779	0.467	0.345	0.385	0.274	0.113
6604	chr6	8322321	8351395	+	0	NA	Intergenic	L2|LINE|L2	98942	NM_001142541	51000	Hs.285847	NM_015948	ENSG00000124786	SLC35B3	C6orf196|CGI-19|PAPST2	solute carrier family 35 member B3	protein-coding	0.752	0.814	0.649	0.139	0.580	0.259	0.321	0.106	0.109	0.336	0.269	0.357	0.097	0.049	0.092	1.959	2.215	0.758	0.772	0.349	0.407	3.724	0.884	0.305	0.355	0.127	0.235	0.270	0.228	0.351	0.150	0.532	0.933	0.559	0.551	0.212	0.281	0.910	0.619	0.019	0.084	0.046	0.041	0.321	0.357	0.020	0.032	0.374	0.082
1934	chr12	49684927	49691546	+	0	NA	promoter-TSS (NM_006262)	promoter-TSS (NM_006262)	-673	NM_006262	5630	Hs.37044	NM_006262	ENSG00000135406	PRPH	NEF4|PRPH1	peripherin	protein-coding	4.413	nan	0.940	0.506	0.929	0.290	1.523	0.556	0.222	0.475	0.312	0.694	0.393	0.148	0.058	0.526	0.823	0.594	0.763	1.983	1.401	3.408	1.153	0.532	0.679	3.584	3.735	1.709	2.354	1.616	2.556	0.606	1.021	0.726	0.545	1.226	4.264	2.630	1.323	7.911	9.962	0.199	0.157	1.523	0.694	2.212	2.206	1.078	0.999
1916	chr12	32831188	32869582	+	0	NA	intron (NM_001330380, intron 1 of 18)	intron (NM_001330380, intron 1 of 18)	18251	NM_001278466	10059	Hs.556296	NM_005690	ENSG00000087470	DNM1L	DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV	dynamin 1 like	protein-coding	1.391	nan	1.109	1.158	0.624	0.288	0.421	0.139	0.113	0.384	0.374	0.545	0.902	0.336	0.146	0.915	0.938	0.774	0.933	1.332	1.360	1.316	0.523	1.493	1.522	0.941	1.222	0.685	0.850	0.689	0.603	0.435	0.751	0.272	0.288	1.664	4.732	0.833	0.527	0.195	0.411	0.047	0.493	0.421	0.545	0.170	0.299	0.201	1.533
4232	chr2	16230316	16240467	+	0	NA	Intergenic	L2a|LINE|L2	44842	NR_126559	104797537	Hs.435748	NR_126559	ENSG00000236289	GACAT3	LINC01458|lncRNA-AC130710	gastric cancer associated transcript 3 (non-protein coding)	ncRNA	0.704	0.436	2.473	0.437	0.191	0.031	0.101	0.044	0.049	0.061	0.098	0.023	0.411	0.034	0.082	0.320	0.455	0.230	0.351	0.290	0.237	0.601	0.158	0.144	0.187	0.105	0.170	0.300	nan	0.554	0.313	15.353	20.399	0.025	0.045	0.464	nan	0.184	0.279	1.296	0.190	0.009	0.039	0.101	0.023		0.161	15.962	0.110
1722	chr11	126838910	126861034	+	0	NA	intron (NM_032531, intron 1 of 16)	L2c|LINE|L2	8466	NR_036126	100422918		NR_036126	ENSG00000266215	MIR3167	-	microRNA 3167	ncRNA	0.588	1.681	0.631	1.661	0.713	0.391	0.551	0.044	0.029	0.603	0.339	2.455	2.150	0.045	0.108	0.450	0.439	0.403	0.350	3.660	4.891	2.577	0.838	0.091	0.099	0.194	0.324	2.532	2.703	0.372	0.213	0.457	0.573	0.625	0.669	0.201	nan	2.414	1.196	1.414	0.684	0.176	0.089	0.551	2.455	0.044	0.018	0.093	0.095
4568	chr2	163344003	163350852	+	0	NA	intron (NM_173162, intron 5 of 7)	MER52-int|LTR|ERV1	146536	NM_001330270	25801	Hs.377894	NM_012198	ENSG00000115271	GCA	GCL	grancalcin	protein-coding	0.864	0.790	nan	0.152	0.197	0.117	0.359	0.110	0.094		0.098	0.248	0.679	0.031	0.078	0.293	0.157	15.547	14.735	0.262	0.272	0.149	0.133	0.200	0.206	0.696	0.937	0.187	0.140	0.461	0.121	0.173	0.265	0.067	0.067	0.164	0.299	0.222	0.254	0.057	0.039	0.014	0.081	0.359	0.248	0.084	0.030		0.144
950	chr1	242398770	242409740	+	0	NA	intron (NM_001320272, intron 5 of 10)	intron (NM_001320272, intron 5 of 10)	208529	NM_001195811	200150	Hs.672452	NM_152666	ENSG00000180287	PLD5	PLDC	phospholipase D family member 5	protein-coding	nan	1.215	nan	0.106	0.542	0.306	1.444	0.035	0.132	0.573	0.481	0.087	1.985	0.030	0.108	0.301	0.132	0.888	1.027	0.492	0.612	1.318	0.427	0.178	0.175	3.787	4.622	0.218	0.222	0.550	0.407	0.072	0.133	1.584	1.768	0.175	0.341	0.483	0.629	0.020	0.016	0.312	0.108	1.444	0.087	0.035	0.012		0.034
1445	chr11	61731551	61743504	+	0	NA	Intergenic	L1M5|LINE|L1	-2395	NM_002032	2495	Hs.524910	NM_002032	ENSG00000167996	FTH1	FHC|FTH|FTHL6|HFE5|PIG15|PLIF	ferritin heavy chain 1	protein-coding	nan	3.529	2.404	4.374	4.070	1.984	3.038	5.625	0.430	1.894	0.845	3.638	11.871	2.715	0.180	5.942	6.049	3.980	9.271	5.064	4.993	5.787	2.022	9.883	10.508	4.788	5.280	5.775	7.614	2.553	2.379	3.451	5.008	4.091	7.760	1.093	1.655	2.559	1.380	4.851	4.030	0.672	1.417	3.038	3.638	1.259	3.111	1.962	0.353
3429	chr17	44264378	44273649	+	0	NA	intron (NM_001193465, intron 2 of 15)	intron (NM_001193465, intron 2 of 15)	1153	NM_001193466	284058	Hs.648744	NM_015443	ENSG00000120071	KANSL1	CENP-36|KDVS|KIAA1267|MSL1v1|NSL1|hMSL1v1	KAT8 regulatory NSL complex subunit 1	protein-coding	4.426	3.458	nan	6.855	5.140	2.508	3.350	5.143	0.697	2.454	1.409	3.744	8.143	4.257	0.236	4.887	4.877	5.459	8.476	5.311	nan	4.788	1.822	20.848	21.429	4.550	5.625	8.176	nan	13.479	11.947	5.318	10.234	4.845	8.065	5.622	5.455	2.576	1.362	2.251	3.816	1.554	5.474	3.350	3.744	2.023	4.112	3.475	2.098
3580	chr17	76163975	76173435	+	0	NA	3' UTR (NM_001320523, exon 3 of 3)	3' UTR (NM_001320523, exon 3 of 3)	4079	NM_001320523	9144	Hs.464210	NM_004710	ENSG00000108639	SYNGR2	-	synaptogyrin 2	protein-coding	2.021	3.737	5.071	1.699	1.248	0.627	1.217	1.069	0.084	1.294	0.616	1.662	3.715	1.292	0.087	2.433	3.467	1.310	2.288	2.301	2.228	2.252	0.635	3.463	3.597	nan	2.807	3.692	4.563	3.529	3.768	0.973	1.402	0.681	0.562	1.038	1.363	nan	1.220	0.708	1.171	0.080	0.380	1.217	1.662	0.350	2.995	0.252	0.484
3073	chr16	19097933	19117715	+	0	NA	Intergenic	Intergenic	-17430	NM_001034841	162073	Hs.530899	NM_001034841	ENSG00000205730	ITPRIPL2	-	inositol 1,4,5-trisphosphate receptor interacting protein like 2	protein-coding	0.901	1.020	nan	0.449	0.257	0.151	2.788	0.218	0.114	0.119	0.088	0.307	0.878	0.065	0.064	0.267	0.141	0.172	0.354	0.273	0.288	3.085	0.602	0.202	0.234	0.140	0.291	2.222	2.511	nan	0.356	0.148	0.138	0.814	1.443	0.219	0.566	0.479	0.460	0.051	0.089	0.190	0.185	2.788	0.307	0.020	0.113	0.025	0.139
1992	chr12	63300370	63319532	+	0	NA	intron (NM_020700, intron 1 of 9)	L2c|LINE|L2	18714	NM_020700	57460	Hs.435479	NM_020700	ENSG00000111110	PPM1H	ARHCL1|NERPP-2C|URCC2	protein phosphatase, Mg2+/Mn2+ dependent 1H	protein-coding	1.751	0.917	2.078	0.790	0.266	0.125	0.998	0.425	0.143	0.520	0.521	0.782	0.731	0.017	0.091	0.461	0.645	0.602	1.043	0.888	nan	5.945	1.554	0.358	0.345	1.043	1.350	2.165	1.570	1.115	0.869	0.974	1.434	1.425	1.644	0.162	0.212	3.518	1.735	0.113	1.430	0.164	0.078	0.998	0.782	0.193	0.364	1.674	0.282
6912	chr6	112822350	112826975	+	0	NA	Intergenic	Intergenic	156130	NM_001013734	442247	Hs.448264	NM_001013734	ENSG00000251258	RFPL4B	RNF211	ret finger protein like 4B	protein-coding	nan	0.830	nan	0.268	0.371	0.104	4.873	0.260	0.036	0.078	0.128	0.344	1.001	1.410	0.165	3.252	2.611	11.510	5.959	2.699	nan	nan	0.487	0.349	0.249	1.250	nan	0.121	0.126	1.600	1.687	1.886	3.170	0.047	0.076	0.486	nan	0.448	0.548	1.061	0.562	0.020	0.718	4.873	0.344	0.414	0.044	2.615	0.242
1466	chr11	65055098	65081514	+	0	NA	Intergenic	AluSx1|SINE|Alu	-13983	NM_006779	10435	Hs.343380	NM_006779	ENSG00000149798	CDC42EP2	BORG1|CEP2	CDC42 effector protein 2	protein-coding	nan	0.771	3.184	0.233	0.310	0.133	0.441	0.733	0.195	0.101	0.119	0.122	0.525	0.174	0.119	0.578	0.665	0.352	0.660	0.858	0.934	0.609	0.253	0.489	0.521	0.567	0.909	0.441	0.518	1.224	0.984	0.320	0.426	0.791	0.792	0.619	1.799	0.410	0.312	0.274	0.155	0.374	0.481	0.441	0.122	0.413	0.050	0.052	0.591
4248	chr2	20633438	20649142	+	0	NA	Intergenic	Charlie5|DNA|hAT-Charlie	-5542	NM_004040	388	Hs.502876	NM_004040	ENSG00000143878	RHOB	ARH6|ARHB|MST081|MSTP081|RHOH6	ras homolog family member B	protein-coding	1.980	1.650	1.391	0.813	1.264	0.570	1.115	0.575	0.215	2.226	0.867	2.173	5.649	0.996	0.169	0.808	0.950	1.394	2.341	1.678	1.370	2.441	2.078	2.479	2.556	1.533	2.071	1.642	nan	2.186	2.308	0.661	1.270	1.400	1.774	1.517	1.483	2.262	1.175	1.417	1.737	0.347	0.912	1.115	2.173	0.581	1.332	0.200	0.329
4534	chr2	144152688	144162550	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	270720	NM_018460	55843	Hs.171011	NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding	0.897	nan	1.029	0.107	0.326	0.224	0.378	0.712	0.148	0.126	0.101	0.572	1.140	0.033	0.081	0.238	0.158	0.405	0.775	0.570	0.741	0.757	0.185	0.339	0.315	5.428	5.226	0.729	0.956	1.448	1.097	0.105	0.221	0.050	0.036	0.359	0.748	0.414	0.349	0.384	0.044	0.048	0.410	0.378	0.572	0.184	0.124	0.148	0.080
778	chr1	201970900	202088518	+	0	NA	Intergenic	AluSz|SINE|Alu	50019	NM_001114309	1999	Hs.603657	NM_004433	ENSG00000163435	ELF3	EPR-1|ERT|ESE-1|ESX	E74 like ETS transcription factor 3	protein-coding	1.677	3.917	1.962	2.467	3.937	2.036	0.895	0.202	0.190	2.176	1.008	2.814	5.982	0.078	0.115	1.979	3.013	1.664	4.133	2.433	2.629	3.663	0.898	nan	nan	0.448	0.787	4.670	5.798	0.739	0.592	1.024	1.832	3.209	2.956	0.504	1.078	1.798	0.942	2.342	4.550	1.159	0.760	0.895	2.814	0.358	0.673	1.730	0.163
5166	chr21	46083849	46092043	+	0	NA	intron (NM_144991, intron 1 of 11)	L1M3|LINE|L1	-1102	NM_181684	353323	Hs.567902	NM_181684	ENSG00000221864	KRTAP12-2	KAP12.2|KRTAP12.2	keratin associated protein 12-2	protein-coding	nan	0.842	1.984	0.246	0.349	0.097	0.094	0.082	0.040	0.307	0.245	0.205	3.262	0.040	0.088	0.215	0.092	0.120	0.148	0.523	0.502	nan	0.157	0.132	0.122	0.126	nan	0.262	0.244	0.600	0.332	0.081	0.233	1.636	1.241	0.139	0.207	4.717	1.749	1.229	0.109	0.198	0.010	0.094	0.205	0.190	0.619	0.024	0.015
5072	chr21	22519984	22538319	+	0	NA	intron (NM_004540, intron 1 of 17)	intron (NM_004540, intron 1 of 17)	158518	NM_004540	4685	Hs.473450	NM_004540	ENSG00000154654	NCAM2	NCAM21	neural cell adhesion molecule 2	protein-coding	0.759	0.782	0.844	0.082	0.160	0.160	0.090	0.089	0.052	0.085	0.134	0.052	0.296	0.012	0.082	0.409	0.255	0.208	0.281	0.261	0.429	0.344	0.122	0.116	0.105	1.835	2.257	0.218	0.322	0.562	0.197	0.092	0.138	2.721	3.404	0.236	nan	0.422	0.358	0.037	0.063	0.854	0.018	0.090	0.052	0.021	0.110	0.043	0.047
6297	chr5	68429333	68435365	+	0	NA	Intergenic	Intergenic	-30488	NM_031966	891	Hs.23960	NM_031966	ENSG00000134057	CCNB1	CCNB	cyclin B1	protein-coding	0.673	0.963	0.542	0.115	0.214	0.136	0.126	0.100	0.053	0.043	0.184	0.059	0.183	0.120	0.160	0.380	0.334	8.235	3.178	0.197	0.235	0.233	0.190	0.437	0.383	0.304	0.447	0.219	0.231	0.431	0.141	0.328	0.532	0.178	0.144	0.153	0.429	0.226	0.312	0.019	0.134		0.069	0.126	0.059	0.036	0.016	0.231	0.163
4168	chr2	856717	881214	+	0	NA	Intergenic	Intergenic	-4853	NR_111963	339822	Hs.651879	NR_033880	ENSG00000237667	LINC01115	-	long intergenic non-protein coding RNA 1115	ncRNA	0.355	0.307	0.381	0.043	0.353	0.170	0.255	0.045	0.105	0.146	0.157	0.155	0.587	0.035	0.085	0.252	0.180	0.161	0.303	1.344	1.221	0.119	0.047	0.123	0.132	0.149	0.225	0.709	0.899	0.377	0.266	0.272	0.276	0.034	0.041	0.099	0.097	0.525	0.519	0.355	2.333	0.024	0.026	0.255	0.155	0.134	0.129	0.060	0.005
7664	chr8	48421337	48453868	+	0	NA	intron (NR_104581, intron 6 of 16)	intron (NR_104581, intron 6 of 16)	213124	NM_005195	1052	Hs.440829	NM_005195	ENSG00000221869	CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT/enhancer binding protein delta	protein-coding	1.156	nan	0.722	0.327	0.318	0.232	0.177	1.419	0.134	0.179	0.141	0.302	0.683	0.982	0.116	0.527	0.360	3.291	5.564	0.532	0.602	0.459	0.144	0.618	0.669	0.418	0.772	0.467	0.436	0.344	0.160	0.228	0.473	0.437	0.554	0.308	0.644	0.883	0.734	0.055	0.091	0.099	0.095	0.177	0.302	0.018	0.667	0.097	0.170
3744	chr18	37776391	37782593	+	0	NA	Intergenic	Intergenic	133242	NR_110791	101927900	Hs.385522	NR_110791	ENSG00000261715	LINC01477	-	long intergenic non-protein coding RNA 1477	ncRNA	nan	1.829	0.737	0.936	0.411	0.156	1.965	0.061		0.153	0.171	0.900	0.515	0.017	0.057	0.356	0.139	0.182	0.181	1.474	1.213	11.589	4.575	0.096	0.071	0.330	0.445	nan	0.482	0.299	0.120	0.102	0.053	0.443	0.350	0.171	0.323	1.709	0.989	0.090	0.103	0.015	0.139	1.965	0.900	0.016	0.032	0.032	0.020
3220	chr16	89155160	89190720	+	0	NA	intron (NR_104293, intron 4 of 10)	AluSx3|SINE|Alu	12723	NR_104293	197322	Hs.461727	NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding	nan	1.171	1.298	1.177	0.594	0.288	1.096	0.144	0.073	0.221	0.130	1.592	1.045	0.141	0.069	1.270	1.842	0.405	0.536	2.001	1.606	0.821	0.264	0.627	0.653	0.178	0.385	0.859	0.995	0.867	0.687	0.722	1.150	0.168	0.175	0.228	0.333	0.949	0.595	2.307	3.050	0.022	0.104	1.096	1.592	0.131	0.364	0.420	0.087
6411	chr5	114749379	114778456	+	0	NA	Intergenic	Intergenic	116674	NM_020177	56929	Hs.47367	NM_020177	ENSG00000145780	FEM1C	EUROIMAGE686608|EUROIMAGE783647|FEM1A	fem-1 homolog C	protein-coding	0.727	1.614	0.972	0.902	1.221	0.571	0.393	0.212	0.078	0.124	0.105	0.070	2.382	0.044	0.105	0.238	0.195	0.319	0.505	0.325	0.372	2.451	0.562	0.087	0.153	0.563	nan	1.161	1.145	0.385	0.205	0.115	0.194	1.612	3.007	0.228	0.510	0.665	0.547	0.602	0.841	0.307	0.085	0.393	0.070	0.076	0.596	0.037	0.145
7586	chr8	8454954	8495015	+	0	NA	Intergenic	Intergenic	-84682	NM_194284	137075	Hs.183617	NM_194284	ENSG00000253958	CLDN23	CLDNL|hCG1646163	claudin 23	protein-coding	0.746	0.905	0.834	0.033	0.178	0.093	0.374	0.637	0.104	0.098	0.140	0.075	0.155	0.154	0.127	0.692	0.756	2.315	9.218	0.675	0.705	1.581	0.496	0.351	0.386	0.524	0.784	0.227	0.217	nan	0.248	0.121	0.205	0.393	0.406	0.245	0.528	0.241	0.363	0.017	0.100	0.057	0.036	0.374	0.075	0.047	0.071	0.035	0.132
3854	chr18	57546889	57551183	+	0	NA	Intergenic	Intergenic	-18156	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	nan	1.543	0.729	3.333	0.890	0.411	1.923	0.260	0.059	0.403	0.152	0.099	0.788	0.051	0.095	0.580	0.212	1.776	1.423	0.569	0.830	15.991	4.320	0.792	1.041	0.214	0.283	7.341	8.016	0.280	0.107	0.287	0.276	4.871	5.810	0.256	0.322	nan	3.288	0.067	0.144	0.459	0.150	1.923	0.099	0.068	1.734	0.092	0.087
7744	chr8	73471847	73536022	+	0	NA	intron (NM_004770, intron 2 of 2)	intron (NM_004770, intron 2 of 2)	54308	NM_004770	9312	Hs.661102	NM_004770	ENSG00000182674	KCNB2	KV2.2	potassium voltage-gated channel subfamily B member 2	protein-coding	1.954	0.874	1.190	0.375	0.437	0.195	0.185	0.120	0.118	0.271	0.160	0.539	0.444	0.047	0.087	1.195	1.371	2.032	0.893	1.110	1.194	0.643	0.275	5.406	5.635	1.831	2.200	0.565	0.664	1.350	1.059	0.889	1.871	0.869	1.149	0.568	1.554	1.227	0.925	0.134	0.353	0.244	0.127	0.185	0.539	0.189	0.123	1.540	0.285
1607	chr11	104391980	104409497	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	79292	NR_120585	102723895	Hs.48803	NR_120585	ENSG00000256422	LOC102723895	-	uncharacterized LOC102723895	ncRNA	0.408	0.644	0.456	0.101	0.173	0.088	0.054	0.053	0.046	0.228	0.258	0.062	0.325	0.012	0.096	1.558	1.118	0.213	0.321	0.270	0.270	0.230	0.090	0.311	0.404	3.669	4.129	0.306	0.348	0.529	0.333	0.163	0.309	0.113	0.109	0.158	0.297	0.702	0.659	0.026	0.030	0.039	0.059	0.054	0.062	0.011	0.174	0.068	0.036
8036	chr9	7326048	7343512	+	0	NA	Intergenic	Intergenic	465026	NM_001318058	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding	0.705	1.523	0.955	0.081	0.202	0.137	0.244	0.111	0.101	0.116	0.132	0.165	1.263	0.037	0.098	0.221	0.104	0.352	0.246	0.858	0.872	1.316	0.385	0.137	0.092	0.499	0.948	0.877	0.780	0.594	0.395	0.091	0.216	0.382	0.521	0.226	nan	1.832	1.395	7.473	0.678	0.075	0.096	0.244	0.165	0.017	1.952	0.051	0.079
3893	chr18	72262584	72266763	+	0	NA	non-coding (NR_024484, exon 1 of 2)	non-coding (NR_024484, exon 1 of 2)	398	NR_024484	400657	Hs.61508	NM_001008234	ENSG00000264247	LINC00909	-	long intergenic non-protein coding RNA 909	ncRNA	nan	nan	4.764	8.631	7.685	3.795	12.685	2.385	0.229	2.390	1.364	12.581	11.748	3.213	0.133	7.724	9.037	9.103	12.599	15.634	nan	13.643	9.039	22.403	23.223	3.184	4.170	18.420	23.897	8.032	9.488	3.908	6.874	8.622	9.674	4.957	4.287	4.306	2.680	3.995	3.111	1.631	3.591	12.685	12.581	1.111	4.348	2.110	1.974
2617	chr14	58325118	58338334	+	0	NA	intron (NM_001206920, intron 1 of 7)	CpG	866	NM_001306087	341880	Hs.28280	NM_001080455	ENSG00000151812	SLC35F4	C14orf36|c14_5373	solute carrier family 35 member F4	protein-coding	nan	nan	1.951	0.138	0.409	0.228	0.785	0.085	0.012	0.192	0.242	0.182	0.868	0.036	0.103	1.710	2.211	0.346	0.317	0.309	0.372	0.184	0.074	0.284	0.313	0.146	0.238	0.249	0.258	0.918	0.656	3.514	7.299	0.092	0.105	3.796	8.830	nan	0.760	1.204	0.136	0.029	0.114	0.785	0.182	0.227	0.023	4.526	4.547
4187	chr2	3651468	3659791	+	0	NA	intron (NM_001255989, intron 1 of 3)	intron (NM_001255989, intron 1 of 3)	1987	NM_001255989	78989	Hs.32603	NM_024027	ENSG00000118004	COLEC11	3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin subfamily member 11	protein-coding	1.339	0.565	0.835	2.646	6.086	3.005	1.395	0.124	0.096	0.324	0.156	0.676	1.272	1.019	0.117	2.290	2.544	0.652	1.020	0.899	0.750	1.080	0.442	1.451	1.266	1.318	1.521	10.847	10.566	2.364	1.566	1.171	1.242	0.484	0.450	1.472	3.191	2.224	0.968	0.906	6.603	0.034	0.285	1.395	0.676	0.695	2.686	0.595	0.896
579	chr1	155821956	155832354	+	0	NA	promoter-TSS (NM_032292)	promoter-TSS (NM_032292)	-69	NM_001282858	54856	Hs.656361	NM_032292	ENSG00000116580	GON4L	GON-4|GON4|YARP	gon-4 like	protein-coding	nan	nan	1.967	2.068	2.139	1.421	4.293	1.738	0.401	3.324	1.304	3.160	15.301	3.163	0.170	2.701	2.782	2.186	2.767	7.967	nan	7.128	4.929	1.330	1.816	4.979	5.767	3.885	7.689	4.629	4.292	2.585	3.098	3.716	4.768	3.947	5.365	2.475	1.158	1.749	1.284	0.723	0.960	4.293	3.160	1.110	3.365	1.384	1.517
4701	chr2	212789499	212796433	+	0	NA	intron (NM_005235, intron 3 of 27)	intron (NM_005235, intron 3 of 27)	498118	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA	nan	1.208	nan	0.104	0.756	0.368	0.294	0.094		0.791	0.410	0.328	0.345	0.552	0.105	0.785	1.443	6.646	7.366	0.193	0.251	7.985	4.389	0.520	0.392	0.924	1.154	0.752	nan	0.436	0.140	0.653	1.451	4.470	5.053	0.224	0.367	0.292	0.348	0.024	0.051	0.908	0.114	0.294	0.328		0.087	0.201	0.092
3301	chr17	17203360	17210018	+	0	NA	promoter-TSS (NM_020201)	promoter-TSS (NM_020201)	9	NM_020201	56953	Hs.513977	NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding	2.486	1.790	1.573	1.894	2.040	1.011	1.558	0.455	0.195	0.657	0.455	1.865	2.389	2.328	0.131	2.313	2.880	1.229	nan	3.060	2.614	2.954	1.315	0.939	1.053	2.193	3.113	3.669	5.492	nan	3.226	0.752	1.444	2.320	2.316	2.259	2.664	1.930	0.853	0.393	0.547	0.556	0.511	1.558	1.865	0.716	6.851	0.610	1.140
3136	chr16	49729148	49738739	+	0	NA	intron (NM_001271620, intron 3 of 7)	intron (NM_001271620, intron 3 of 7)	-35801	NM_001330533	23090	Hs.443715	NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding	1.537	3.042	1.076	0.045	1.024	0.413	11.800	0.071	0.017	0.083	0.017	0.133	0.393	0.092	0.072	0.193	0.210	0.092	0.146	1.725	1.724	4.959	1.778	0.121	0.063	0.734	1.116	0.199	0.316	1.993	1.827	0.123	0.193	2.697	2.840	0.727	1.292	2.056	0.957	0.006	0.065	0.863	0.365	11.800	0.133	1.644	0.021		0.128
8220	chr9	100393637	100398799	+	0	NA	promoter-TSS (NM_139246)	promoter-TSS (NM_139246)	-256	NM_139246	158427	Hs.723236	NM_139246	ENSG00000136925	TSTD2	C9orf97	thiosulfate sulfurtransferase like domain containing 2	protein-coding	6.414	5.285	7.031	9.328	8.483	4.107	5.792	3.162	0.252	4.168	2.197	6.933	14.467	3.757	0.145	5.406	4.896	9.433	11.956	13.876	10.851	8.313	5.129	11.316	11.135	5.006	5.317	11.118	nan	13.748	14.564	4.637	7.090	11.345	12.316	6.367	6.234	5.887	2.931	2.928	4.390	1.973	3.407	5.792	6.933	1.736	3.086	2.377	1.907
4317	chr2	45150857	45174316	+	0	NA	Intergenic	CpG	6060	NR_103785	100506108	Hs.503113	NR_103785	ENSG00000236502	SIX3-AS1	SIX3OS	SIX3 antisense RNA 1	ncRNA	2.355	nan	2.428	0.675	1.307	0.767	1.658	0.095	0.069	0.403	0.194	1.653	2.895	3.017	0.122	0.298	0.222	1.574	2.005	nan	3.161	1.376	0.559	1.445	1.624	0.506	0.833	1.736	2.252	1.187	1.332	0.193	0.319	2.346	1.920	4.165	nan	nan	0.682	0.470	0.747	1.216	0.206	1.658	1.653	0.224	0.475	0.034	3.804
5863	chr4	38008859	38018766	+	0	NA	intron (NM_015173, intron 2 of 19)	intron (NM_015173, intron 2 of 19)	51756	NM_006607	10744	Hs.668806	NM_006607	ENSG00000250254	PTTG2	-	pituitary tumor-transforming 2	protein-coding	0.858	0.628	0.849	0.497	0.281	0.081	0.348	0.219	0.146	3.186	1.046	0.096	1.176	0.066	0.073	0.448	0.320	0.968	3.392	0.372	0.369	2.768	1.320	0.180	0.247	1.111	1.545	0.562	0.712	0.975	0.640	0.257	0.387	0.712	0.903	0.394	0.764	4.045	2.094	0.113	0.262	0.238	0.161	0.348	0.096	0.117	0.020	0.120	0.236
5061	chr21	11166775	11175278	+	0	NA	Intergenic	Intergenic	-72089	NM_001187	574	Hs.545789	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding	2.212	1.530	nan	2.884	2.066	0.980	1.734	2.752	0.433	1.312	0.699	7.972	0.767	1.175	0.293	0.962	0.713	3.841	5.671	1.646	1.823	4.771	2.200	0.719	0.743	7.634	8.570	9.996	11.081	2.777	2.223	0.838	1.405	0.128	0.173	0.999	1.073	6.117	3.485	0.170	5.399	0.023	0.188	1.734	7.972	0.081	2.495	0.672	1.254
1628	chr11	110948134	110960401	+	0	NA	Intergenic	Intergenic	-172440	NM_198498	341032	Hs.298685	NM_198498	ENSG00000150750	C11orf53	-	chromosome 11 open reading frame 53	protein-coding	0.769	0.940	0.802	0.806	0.196	0.169	0.619	0.043	0.013	0.218	0.290	0.127	3.168	0.088	0.136	2.416	nan	0.340	0.409	1.653	1.877	3.159	0.998	0.300	0.324	1.291	nan	0.927	0.750	0.368	0.216	0.498	0.763	1.194	1.064	0.324	0.577	2.580	1.187	6.322	0.095	0.149	0.026	0.619	0.127	0.016	0.473	0.178	0.131
6011	chr4	120271871	120278979	+	0	NA	Intergenic	Intergenic	-32109	NM_000134	2169	Hs.282265	NM_000134	ENSG00000145384	FABP2	FABPI|I-FABP	fatty acid binding protein 2	protein-coding	1.160	2.274	nan	2.630	0.853	0.538	0.142	0.245	0.043	0.929	0.645	4.253	1.725	0.030	0.092	1.969	2.084	4.935	2.802	3.653	4.433	8.027	2.504	0.152	0.130	0.472	0.916	0.794	1.012	1.602	1.194	4.773	7.342	7.202	8.877	0.254	0.593	3.398	1.616	0.332	0.124	2.089	0.759	0.142	4.253	0.920	0.957	10.096	0.087
3219	chr16	89098041	89121335	+	0	NA	Intergenic	Intergenic	-50529	NM_001243279	197322	Hs.461727	NM_174917	ENSG00000176715	ACSF3	-	acyl-CoA synthetase family member 3	protein-coding	nan	0.767	0.626	0.356	0.277	0.152	0.392	0.042	0.076	0.122	0.050	0.493	0.833	0.023	0.040	3.040	4.525	0.283	0.544	0.849	0.712	0.445	0.109	0.138	0.177	0.082	0.210	0.129	0.221	1.620	1.998	1.453	1.985	0.226	0.241	0.168	0.170	0.679	0.561	1.151	0.679	0.029	0.439	0.392	0.493	0.465	0.658	1.130	0.037
8161	chr9	75650008	75696945	+	0	NA	Intergenic	AluSc|SINE|Alu	-93171	NM_000700	301	Hs.494173	NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding	nan	nan	nan	0.110	0.299	0.127	0.199	0.211	0.073	0.060	0.119	0.043	0.195	1.793	0.095	0.303	0.187	0.469	nan	0.306	nan	0.158	0.076	0.305	0.358	0.112	0.157	0.275	0.279	0.212	0.110	0.123	0.200	0.330	0.430	0.225	0.401	0.588	0.568	0.013	0.038	0.063	0.005	0.199	0.043	0.010	0.057	0.053	0.071
6042	chr4	146738246	146747014	+	0	NA	intron (NM_001306215, intron 8 of 14)	intron (NM_001306215, intron 8 of 14)	117482	NM_001306215	152485	Hs.133916	NM_178835	ENSG00000151612	ZNF827	-	zinc finger protein 827	protein-coding	1.653	0.787	2.423	0.258	0.290	0.290	0.162	0.321	0.074	0.411	0.246	0.437	0.225	0.098	0.050	0.319	0.831	0.309	0.538	0.955	0.841	0.344	0.159	0.131	0.211	0.720	1.167	0.601	0.590	2.519	2.421	0.172	0.335	0.179	0.189	0.465	0.957	0.782	0.647	0.019	0.152	0.021	3.913	0.162	0.437	0.444	0.150	0.034	0.480
237	chr1	39954558	39966109	+	0	NA	intron (NM_181809, intron 1 of 6)	intron (NM_181809, intron 1 of 6)	3015	NM_181809	353500	Hs.472497	NM_181809	ENSG00000183682	BMP8A	-	bone morphogenetic protein 8a	protein-coding	14.527	nan	1.479	2.271	0.556	0.389	0.310	0.136	0.028	0.420	0.334	0.889	1.452	0.265	0.103	0.363	0.339	0.453	0.678	1.707	1.477	nan	0.430	0.612	0.731	0.389	0.888	5.942	8.294	nan	0.648	0.628	0.940	0.328	0.240	0.408	0.473	3.635	nan	0.304	0.343	0.017	0.222	0.310	0.889	0.101	0.202	0.112	0.075
2371	chr13	92598095	92605452	+	0	NA	intron (NM_004466, intron 6 of 7)	intron (NM_004466, intron 6 of 7)	402687	NR_120382	100873970	Hs.567269	NR_120382		GPC5-AS2	-	GPC5 antisense RNA 2	ncRNA	1.010	1.121	0.875	0.130	0.299	0.153	0.255	0.090	0.023	0.128	0.077	0.409	0.351		0.061	0.725	0.528	0.177	0.195	0.607	0.729	0.265	0.193	0.170	0.142	0.782	0.855	0.797	0.733	1.698	1.668	0.258	0.625	0.699	0.749	2.125	5.015	0.223	0.211	0.037	0.118	0.300	4.405	0.255	0.409	0.408	0.125	0.362	0.990
2519	chr14	29838794	29867745	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	543630	NM_002742	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding	1.251	0.850	0.690	0.221	0.624	0.349	0.457	0.221	0.153	0.124	0.197	0.370	0.556	0.194	0.108	0.287	0.173	0.456	0.233	1.103	1.206	2.607	1.108	0.158	0.152	9.305	10.232	0.315	0.361	0.660	0.263	0.098	0.175	1.876	2.544	0.189	0.466	0.915	0.544	0.052	0.723	0.825	0.204	0.457	0.370	0.068	0.053	0.062	0.057
6958	chr6	128549768	128563060	+	0	NA	intron (NM_001135648, intron 5 of 30)	AT_rich|Low_complexity|Low_complexity	207404	NR_125849	101928140	Hs.656779	NR_125849		LOC101928140	-	uncharacterized LOC101928140	ncRNA	1.191	1.018	2.146	0.222	0.281	0.157	0.539	0.139	0.061	0.130	0.201	0.036	0.301	0.041	0.101	0.478	0.396	0.244	0.441	0.353	0.361	1.589	0.422	0.301	0.329	2.221	2.419	0.258	0.318	1.385	0.903	0.131	0.194	3.087	6.354	0.594	1.285	0.914	0.497	0.046	0.133	0.905	0.101	0.539	0.036	0.191	0.031	0.030	0.316
2610	chr14	57342704	57373142	+	0	NA	intron (NR_029385, intron 1 of 3)	intron (NR_029385, intron 1 of 3)	78022	NR_029385	100309464	Hs.637962	NR_029385	ENSG00000248550	OTX2-AS1	OTX2OS1	OTX2 antisense RNA 1 (head to head)	ncRNA	nan	nan	2.543	0.252	0.701	0.374	0.425	0.100	0.058	0.077	0.128	0.285	0.401	0.050	0.124	0.417	0.291	1.813	1.052	0.350	0.395	0.484	0.149	0.414	0.505	0.144	0.222	0.321	0.375	0.973	0.541	0.252	0.406	0.198	0.334	3.352	10.787	nan	0.551	0.036	0.140	0.041	0.114	0.425	0.285	0.057	0.030	0.189	2.237
4154	chr19	56109576	56118392	+	0	NA	exon (NM_153219, exon 2 of 2)	exon (NM_153219, exon 2 of 2)	2278	NM_153219	147807	Hs.440291	NM_153219	ENSG00000171443	ZNF524	-	zinc finger protein 524	protein-coding	4.673	3.068	5.173	4.706	9.269	4.708	5.031	2.801	0.403	2.004	0.787	5.218	8.346	5.635	0.207	7.984	7.557	4.733	6.235	8.912	8.412	8.671	6.144	6.534	7.192	3.954	5.196	7.599	11.505	8.740	7.268	4.614	5.210	5.473	5.834	5.371	6.370	4.253	1.903	5.239	6.233	1.380	3.535	5.031	5.218	1.684	2.484	2.823	2.855
3212	chr16	87811133	87817336	+	0	NA	Intergenic	Intergenic	-1480	NR_120309	102724467	Hs.587857	NR_120309		LOC102724467	-	uncharacterized LOC102724467	ncRNA	nan	1.290	1.569	4.438	10.742	5.615	2.846	1.123	0.274	2.677	1.449	4.958	4.200	3.898	0.217	2.951	3.341	0.859	1.949	3.170	2.818	7.536	3.529	4.442	4.726	0.547	0.859	4.119	2.913	2.025	2.362	3.709	3.032	2.629	2.924	1.824	4.604	4.619	2.334	1.828	2.593	0.369	1.235	2.846	4.958	0.880	5.363	2.201	1.526
4407	chr2	75288000	75306636	+	0	NA	intron (NM_015727, intron 2 of 3)	L1MC3|LINE|L1	-20621	NR_049796	100846995		NR_049796	ENSG00000263909	MIR5000	-	microRNA 5000	ncRNA	nan	nan	2.738	0.856	1.156	0.843	0.379	0.101	0.051	0.287	0.186	1.927	0.837	0.047	0.105	0.443	0.305	0.275	0.553	1.956	2.338	3.041	0.920	0.242	0.292	0.835	1.166	3.173	3.052	1.084	0.853	0.225	0.300	0.359	0.580	0.846	2.046	nan	1.760	0.206	0.133	0.071	0.239	0.379	1.927	0.244	1.093	0.058	0.379
914	chr1	231472373	231475657	+	0	NA	promoter-TSS (NM_175876)	promoter-TSS (NM_175876)	333	NM_001261462	83932	Hs.554892	NM_032018	ENSG00000010072	SPRTN	C1orf124|DVC1|PRO4323|spartan	SprT-like N-terminal domain	protein-coding	7.127	5.519	5.917	8.636	6.310	2.779	5.352	3.963	0.247	3.528	1.619	4.701	11.148	4.053	0.115	5.093	5.968	12.996	19.192	11.993	9.353	9.931	5.334	15.309	15.324	4.415	5.250	nan	9.942	6.629	7.512	2.678	5.934	3.974	6.175	7.654	8.492	nan	2.073	2.730	2.597	0.778	2.348	5.352	4.701	1.417	2.344	1.718	2.000
4756	chr2	235032980	235042652	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	78470	NM_006944	6694	Hs.444488	NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding	0.776	nan	0.603	0.118	0.410	0.216	0.268	0.031	0.068	0.065	0.118	0.346	0.698	0.056	0.125	0.475	0.379	8.160	2.519	0.359	0.369	0.265	0.186	0.191	0.278	0.414	0.572	0.355	nan	0.386	0.171	0.250	0.327	0.081	0.097	0.325	0.863	0.393	0.379	0.045	0.102		0.077	0.268	0.346	0.020	0.100	0.082	0.056
300	chr1	51699994	51704549	+	0	NA	5' UTR (NM_014372, exon 1 of 3)	5' UTR (NM_014372, exon 1 of 3)	326	NM_014372	26994	Hs.309641	NM_014372	ENSG00000123091	RNF11	CGI-123|SID1669	ring finger protein 11	protein-coding	5.653	5.534	6.430	4.398	3.906	1.977	3.072	4.284	0.478	5.591	2.072	3.502	11.687	3.200	0.165	2.375	3.923	5.309	6.395	17.053	13.066	9.975	3.282	11.222	11.946	5.207	5.424	9.015	14.800	7.084	7.366	1.457	4.016	5.019	5.642	8.931	12.104	4.874	2.908	4.639	4.345	0.837	2.291	3.072	3.502	0.745	3.184	0.957	2.746
1439	chr11	61391633	61420333	+	0	NA	non-coding (NR_002775, exon 5 of 5)	non-coding (NR_002775, exon 5 of 5)	23475	NR_002775	113157	Hs.502733	NR_002775	ENSG00000243742	RPLP0P2	RPLP0L2|RPLP0_3_1146	ribosomal protein lateral stalk subunit P0 pseudogene 2	pseudo	nan	0.997	1.010	0.376	0.434	0.257	0.302	0.080	0.129	0.157	0.139	0.583	1.325	0.079	0.111	1.376	1.422	0.202	0.471	1.191	1.176	0.942	0.405	0.423	0.472	0.394	0.653	4.293	4.831	0.703	0.563	0.698	0.766	0.227	0.257	0.658	2.149	0.870	0.557	0.369	0.718	0.033	0.113	0.302	0.583	0.489	0.393	0.124	0.883
4419	chr2	85959433	86027026	+	0	NA	intron (NM_032827, intron 2 of 2)	MIR|SINE|MIR	12320	NM_032827	84913	Hs.135569	NM_032827	ENSG00000168874	ATOH8	HATH6|bHLHa21	atonal bHLH transcription factor 8	protein-coding	nan	0.712	nan	0.250	0.470	0.201	0.871	0.912	0.149	0.155	0.167	1.029	1.725	0.114	0.105	0.770	1.306	0.694	2.421	1.953	1.483	0.699	0.188	0.488	0.581	2.941	3.999	1.045	0.773	1.801	1.980	0.329	0.340	0.376	0.466	1.136	2.877	2.016	1.168	2.766	0.249	0.126	0.098	0.871	1.029	1.027	0.510	0.060	0.889
3654	chr18	7997610	8009957	+	0	NA	intron (NM_001105244, intron 7 of 32)	intron (NM_001105244, intron 7 of 32)	363249	NR_024419	100192426	Hs.666655	NR_024419	ENSG00000266149	LOC100192426	-	uncharacterized LOC100192426	ncRNA	0.825	0.779	0.797	0.038	0.448	0.247	0.468	0.091	0.156	0.214	0.167	0.368	nan	0.059	0.108	0.918	1.295	0.357	0.420	0.559	0.765	nan	3.097	0.245	0.308	0.084	nan	1.008	1.007	nan	0.120	0.168	0.357	1.619	0.689	0.340	nan	nan	1.048	0.026	0.116	0.279	0.038	0.468	0.368	0.015	0.074	0.072	0.250
6330	chr5	73468650	73512292	+	0	NA	Intergenic	Intergenic	113679	NR_105009	102503429	Hs.519391	NR_105009	ENSG00000248942	LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA	0.937	nan	1.225	0.367	0.815	0.433	0.441	0.516	0.125	0.705	0.336	0.774	0.932	3.465	0.162	0.251	0.229	0.604	1.154	0.938	0.860	nan	1.222	0.138	0.141	2.407	nan	0.756	0.520	0.517	0.310	0.107	0.167	1.435	0.981	0.328	0.862	1.479	0.796	0.885	0.861	0.258	0.268	0.441	0.774	0.200	0.481	0.041	0.286
1407	chr11	46140459	46145149	+	0	NA	5' UTR (NM_001101802, exon 1 of 18)	5' UTR (NM_001101802, exon 1 of 18)	181	NM_001101802	51317	Hs.502458	NM_016621	ENSG00000135365	PHF21A	BHC80|BM-006	PHD finger protein 21A	protein-coding	nan	3.291	3.508	5.275	6.055	3.185	5.689	2.662	0.374	2.840	1.687	5.524	15.430	8.964	0.153	4.442	7.471	4.066	4.383	13.422	9.494	7.061	2.467	7.266	7.080	4.596	5.620	2.875	3.919	6.944	8.675	3.112	6.955	5.045	2.974	3.818	nan	2.160	1.193	3.881	5.426	2.133	3.354	5.689	5.524	1.614	3.087	5.199	3.274
3946	chr19	5026974	5051126	+	0	NA	intron (NM_015015, intron 3 of 22)	intron (NM_015015, intron 3 of 22)	69926	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine demethylase 4B	protein-coding	0.799	1.399	3.936	0.395	0.579	0.345	0.809	0.113	0.120	0.335	0.273	2.465	2.011	0.076	0.067	0.441	0.753	0.364	0.644	3.528	3.912	0.555	0.146	0.471	0.433	0.844	1.465	2.954	nan	2.152	2.452	0.294	0.469	0.292	0.342	0.300	0.466	1.428	0.881	3.874	1.835	0.074	0.148	0.809	2.465	0.222	0.653	0.107	0.138
496	chr1	145433042	145457775	+	0	NA	intron (NM_001039703, intron 68 of 85)	AluJb|SINE|Alu	6061	NM_001313972	10628	Hs.533977	NM_006472	ENSG00000265972	TXNIP	ARRDC6|EST01027|HHCPA78|THIF|VDUP1	thioredoxin interacting protein	protein-coding	2.393	nan	2.925	2.465	2.200	1.084	3.043	1.865	0.340	1.473	0.938	1.822	12.041	0.304	0.132	1.194	2.119	1.545	2.763	4.107	3.894	3.276	0.876	1.975	2.095	1.915	2.219	4.558	4.056	2.594	2.721	1.760	2.688	1.671	1.900	1.227	3.481	1.862	1.017	3.061	6.996	0.587	0.646	3.043	1.822	0.590	1.571	1.825	1.266
6246	chr5	43063342	43068957	+	0	NA	promoter-TSS (NR_102752)	promoter-TSS (NR_102752)	924	NR_034127	100132356	Hs.726831	NM_175919		LOC100132356	-	uncharacterized LOC100132356	ncRNA	7.339	7.068	9.351	14.007	4.090	2.309	6.373	11.076	1.583	3.243	1.937	8.434	13.995	8.277	0.245	3.123	5.024	6.367	10.884	14.658	12.372	7.097	2.499	14.769	15.414	7.984	9.497	7.865	11.323	9.682	10.190	6.893	13.052	2.747	2.482	1.544	1.682	2.851	1.709	6.323	10.906	0.509	2.289	6.373	8.434	2.851	6.654	5.273	0.200
2829	chr15	31506185	31530273	+	0	NA	intron (NM_001243538, intron 2 of 3)	LTR12F|LTR|ERV1	4825	NM_001243538	283710	Hs.591097	NM_001243538		LOC283710	-	uncharacterized LOC283710	protein-coding	1.132	nan	nan	0.714	1.553	0.712	0.896	0.718	0.147	1.080	0.553	1.810	3.995	0.221	0.094	0.947	1.671	0.706	1.484	1.606	1.777	2.549	0.730	0.629	0.592	0.507	0.715	1.103	1.500	2.146	1.972	0.726	1.017	3.290	3.039	0.445	0.828	0.527	0.395	1.300	1.159	1.116	0.585	0.896	1.810	0.724	0.862	0.517	0.324
5170	chr21	46384796	46390300	+	0	NA	intron (NM_001316986, intron 4 of 4)	intron (NM_001316986, intron 4 of 4)	26453	NR_033840	727699	Hs.397403	NR_033840	ENSG00000234880	LINC00163	C21orf134|NCRNA00163|NLC1-A|NLC1A	long intergenic non-protein coding RNA 163	ncRNA	nan	0.520	1.270	0.114	0.295	0.175	0.590	0.108	0.097	0.028	0.136	0.087	1.200	0.059	0.065	0.354	0.649	0.250	0.658	0.775	0.548	nan	0.067	0.410	0.336	0.304	nan	0.221	0.278	1.010	0.822	0.153	0.506	0.260	0.271	0.361	0.598	0.435	0.320	0.990	0.130	0.051	0.058	0.590	0.087	3.573	0.055	0.071	0.089
7738	chr8	70741434	70750042	+	0	NA	promoter-TSS (NM_001146008)	promoter-TSS (NM_001146008)	-113	NM_001146008	81796	Hs.152460	NM_030958	ENSG00000137571	SLCO5A1	OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15	solute carrier organic anion transporter family member 5A1	protein-coding	2.114	2.988	1.829	1.957	2.272	0.952	2.287	0.302	0.168	1.859	0.671	0.549	10.733	0.241	0.051	0.336	0.255	1.879	2.767	6.011	4.553	5.098	2.789	5.430	6.015	2.622	3.472	0.386	0.890	1.789	2.227	1.115	2.207	6.584	7.017	1.683	1.186	5.008	2.818	0.125	4.216	1.775	1.910	2.287	0.549	0.224	0.660	0.729	0.391
605	chr1	159229180	159233591	+	0	NA	Intergenic	L1MB4|LINE|L1	-28119	NM_002001	2205	Hs.897	NM_002001	ENSG00000179639	FCER1A	FCE1A|FcERI	Fc fragment of IgE receptor Ia	protein-coding	nan	nan	0.933	0.079	0.292		0.059	0.163	0.298	0.106	0.072	0.054	0.363	0.024	0.140	0.300	0.452	13.556	1.540	0.137	nan	0.089	0.026	0.093	0.045	0.198	0.311	0.169	0.246	0.265	0.055	4.981	9.453	0.099	0.102	0.119	0.339	0.218	0.472	0.051	0.131	0.022	0.109	0.059	0.054			10.045	0.027
2987	chr15	91190779	91210651	+	0	NA	intron (NR_120372, intron 2 of 3)	L1M5|LINE|L1	-2750	NR_120371	101929765	Hs.615348	NR_120371	ENSG00000245479	LINC01585	-	long intergenic non-protein coding RNA 1585	ncRNA	nan	nan	nan	0.300	0.956	0.531	0.533	0.493	0.106	0.205	0.180	0.956	0.980	0.420	0.066	2.359	3.168	0.821	1.442	0.667	0.704	nan	0.408	1.335	1.433	0.313	0.455	1.456	2.001	nan	0.534	5.253	5.734	0.307	0.210	0.252	nan	0.934	0.581	0.134	2.652	0.019	0.235	0.533	0.956	0.170	0.536	8.024	0.069
4855	chr20	12151961	12162339	+	0	NA	Intergenic	L1M6|LINE|L1	258637	NM_014962	22903	Hs.709366	NM_014962	ENSG00000132640	BTBD3	dJ742J24.1	BTB domain containing 3	protein-coding	1.253	nan	0.873	0.404	1.298	0.664	0.325	0.115	0.031	1.268	0.660	0.649	3.187	0.010	0.090	0.894	1.274	0.695	1.998	0.772	0.777	5.204	1.567	0.618	0.581	0.783	0.960	0.912	0.916	0.577	0.326	0.320	0.641	6.520	6.276	0.354	0.615	2.932	1.460	2.762	2.160	1.258	0.359	0.325	0.649	0.018	1.288	0.640	0.246
1699	chr11	120104111	120188472	+	0	NA	intron (NM_014352, intron 3 of 12)	intron (NM_014352, intron 3 of 12)	-9650	NR_038829	649133	Hs.568902	NR_038829	ENSG00000259541	LOC649133	-	uncharacterized LOC649133	ncRNA	0.495	0.670	0.477	0.076	0.266	0.138	0.380	0.037	0.046	0.076	0.131	0.088	1.070	0.062	0.095	3.779	5.130	4.918	4.114	0.355	0.455	0.294	0.150	5.204	5.202	0.194	0.423	0.200	0.209	0.393	0.241	4.032	7.728	0.115	0.134	0.159	nan	0.584	0.570	0.095	0.113	0.026	0.039	0.380	0.088	0.043	0.031	5.561	0.058
1228	chr10	120995979	121025002	+	0	NA	intron (NM_005308, intron 1 of 15)	intron (NM_005308, intron 1 of 15)	43293	NM_005308	2869	Hs.524625	NM_005308	ENSG00000198873	GRK5	GPRK5	G protein-coupled receptor kinase 5	protein-coding	nan	0.849	1.612	0.245	0.412	0.235	0.182	0.478	0.138	0.076	0.060	0.109	0.339	0.075	0.090	1.415	1.809	0.496	0.612	0.240	0.266	0.471	0.269	0.452	0.418	0.363	0.636	1.529	1.678	1.546	1.539	0.817	1.230	0.249	0.238	1.071	3.340	0.239	0.235	0.104	0.214	0.136	0.047	0.182	0.109	0.221	0.186	0.892	1.297
6117	chr5	39116	57822	+	0	NA	Intergenic	Intergenic	-91904	NM_052909	153478	Hs.535800	NM_052909	ENSG00000153404	PLEKHG4B	-	pleckstrin homology and RhoGEF domain containing G4B	protein-coding	0.591	1.289	2.382	0.958	0.826	0.318	0.274	0.252	0.191	0.904	0.594	4.234	1.404	0.952	0.114	1.416	1.617	0.204	nan	2.581	2.292	2.270	0.665	0.107	0.111	0.530	0.942	nan	9.748	nan	0.371	0.386	0.528	0.272	0.227	0.116	0.119	2.314	nan	0.487	0.445	0.036	0.056	0.274	4.234	0.084	0.495	0.106	0.020
5788	chr3	193652868	193667238	+	0	NA	Intergenic	Intergenic	51974	NR_027764	100128023	Hs.730112	NR_027764		DPPA2P3	-	developmental pluripotency associated 2 pseudogene 3	pseudo	nan	2.882	1.171	2.718	1.462	0.847	0.260	0.156	0.146	1.098	0.568	0.492	nan	0.045	0.058	0.666	1.039	0.241	0.501	0.543	0.498	11.359	4.409	0.412	0.461	0.318	0.522	2.143	2.445	0.536	0.396	0.725	1.059	2.751	3.030	0.329	0.455	2.853	1.255	0.308	0.191	0.628	0.167	0.260	0.492	0.036	0.156	0.400	0.227
5917	chr4	57299065	57305091	+	0	NA	promoter-TSS (NM_001079524)	promoter-TSS (NM_001079524)	163	NM_006452	10606	Hs.518774	NM_006452	ENSG00000128050	PAICS	ADE2|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase	protein-coding	nan	1.596	2.629	5.898	3.633	1.864	2.901	1.906	0.454	2.365	1.324	2.851	6.025	2.960	0.159	7.183	6.359	2.736	4.381	4.826	3.619	9.453	4.244	12.061	13.177	5.882	7.294	8.226	15.161	9.215	13.749	3.214	5.058	3.779	4.084	7.053	6.887	8.924	5.441	2.752	4.564	0.755	2.581	2.901	2.851	0.756	3.181	2.178	2.345
694	chr1	181038893	181048824	+	0	NA	Intergenic	AluSz6|SINE|Alu	-13780	NM_016545	51278	Hs.15725	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding	nan	nan	1.303	0.045	0.371	0.129	0.447	4.229	0.852	0.188	0.195	0.133	0.387	0.143	0.126	0.640	0.723	2.569	11.196	0.434	nan	0.589	0.162	nan	0.509	0.590	0.951	0.292	0.277	0.721	0.384	0.508	0.722	0.186	0.330	0.906	nan	0.790	0.570	0.133	0.266	0.104	0.116	0.447	0.133	0.174	0.082	0.121	1.037
5426	chr3	89089371	89101162	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-61408	NM_005233	2042	Hs.123642	NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding	nan	0.672	0.470	0.037	0.103	0.029	0.250	0.032	0.014	0.053	0.108	0.121	0.241	0.027	0.113	0.165	0.109	0.274	0.417	0.172	0.210	0.349	0.355	0.107	0.169	5.213	5.959	0.085	0.131	0.377	0.204	0.040	0.135	0.037	0.033	0.231	0.450	0.298	0.389	0.029	0.023		0.006	0.250	0.121		0.241	0.017	0.031
5371	chr3	51994210	52004173	+	0	NA	intron (NM_020418, intron 1 of 12)	L2|LINE|L2	2259	NM_020418	57060	Hs.20930	NM_020418	ENSG00000090097	PCBP4	CBP|LIP4|MCG10	poly(rC) binding protein 4	protein-coding	2.772	1.633	nan	0.641	0.547	0.284	1.221	0.881	0.129	0.689	0.279	1.202	1.042	1.639	0.073	1.330	2.104	2.064	2.372	2.590	2.381	1.105	0.479	1.422	1.678	1.275	1.737	1.400	2.046	8.993	12.315	1.253	1.828	1.892	1.315	3.834	11.866	1.361	0.723	0.410	0.427	0.681	2.281	1.221	1.202	0.370	1.183	0.606	5.972
4444	chr2	98957283	98966738	+	0	NA	promoter-TSS (NM_001298)	promoter-TSS (NM_001298)	-608	NM_001079878	1261	Hs.234785	NM_001298	ENSG00000144191	CNGA3	ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	3.711	0.783	0.886	0.112	0.203	0.084	0.948	0.040	0.067	0.229	0.089	0.755	0.492	0.060	0.088	0.652	0.779	0.191	0.128	1.031	0.771	0.819	0.434	0.092	0.155	0.196	0.292	0.220	0.341	0.894	0.955	0.318	0.508	1.379	1.034	3.069	3.747	0.435	0.439	0.024	0.149	0.141	5.396	0.948	0.755	0.256	0.038	0.044	0.440
3788	chr18	46661119	46670168	+	0	NA	intron (NM_017653, intron 14 of 16)	HAL1|LINE|L1	-89505	NR_039898	100616420		NR_039898	ENSG00000263849	MIR4744	-	microRNA 4744	ncRNA	nan	1.057	0.869	0.150	0.393	0.229	5.536	0.075	0.106	0.173	0.081	0.423	0.276	0.066	0.085	0.433	0.340	0.194	0.381	0.658	0.581	9.027	2.998	0.102	0.170	0.362	0.562	0.202	0.142	0.350	0.221	0.131	0.279	4.399	5.526	0.447	nan	1.371	1.012	0.056	0.079	1.265	0.210	5.536	0.423	0.021	0.056	0.066	0.150
3148	chr16	56311266	56353347	+	0	NA	intron (NM_020988, intron 3 of 8)	intron (NM_020988, intron 3 of 8)	52874	NR_037499	100500891		NR_037499	ENSG00000265281	MIR3935	-	microRNA 3935	ncRNA	nan	nan	nan	1.740	1.709	0.844	0.552	0.070	0.034	0.362	0.185	2.345	0.978	0.046	0.071	0.354	0.352	0.083	0.126	0.823	1.031	0.816	0.225	0.281	0.317	0.437	nan	nan	nan	nan	0.586	0.158	0.203	0.204	0.266	0.289	nan	nan	1.088	0.127	0.129	0.062	0.183	0.552	2.345	0.341	0.271	0.028	0.156
2244	chr13	26062585	26076859	+	0	NA	intron (NM_016529, intron 2 of 36)	AluJr|SINE|Alu	26810	NM_001313741	51761	Hs.444957	NM_016529	ENSG00000132932	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase phospholipid transporting 8A2	protein-coding	0.685	1.508	1.158	0.543	0.231	0.079	0.323	0.089	0.091	0.638	0.322	0.595	1.833	0.031	0.085	1.016	1.734	0.143	nan	2.324	1.984	0.121	0.063	0.062	0.066	0.126	0.216	1.835	2.105	2.827	2.368	0.340	0.350	0.056	0.057	0.388	0.799	4.674	2.507	2.876	2.346	0.014	0.083	0.323	0.595	0.054	0.107	0.093	0.069
7201	chr7	23961879	23979468	+	0	NA	Intergenic	Intergenic	220728	NM_001260504	56164	Hs.309767	NM_031414	ENSG00000196335	STK31	SGK396|TDRD8	serine/threonine kinase 31	protein-coding	1.030	0.892	0.878	0.080	0.301	0.211	0.340	0.145	0.071	0.118	0.194	0.232	0.372	0.086	0.119	0.430	0.223	0.290	nan	0.397	0.583	5.888	2.276	0.205	0.248	0.202	0.404	0.338	0.400	0.462	0.193	0.118	0.204	0.238	0.404	0.123	nan	1.383	0.944	0.057	0.099	0.044	0.510	0.340	0.232	0.050	0.052	0.034	0.099
7064	chr6	156598840	156604840	+	0	NA	Intergenic	Intergenic	333909	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA	nan	0.709	0.936	6.081	0.497	0.203	0.761	0.349	0.096	0.993	0.663	1.971	1.843	0.018	0.136	2.806	4.192	0.248	0.318	4.382	nan	11.890	7.880	0.166	0.272	0.198	0.200	4.533	5.324	1.210	0.818	0.250	0.661	2.723	3.394	0.864	nan	0.915	0.569	1.900	2.147	0.943	0.265	0.761	1.971	0.098	0.905	0.988	0.591
8174	chr9	81869199	81892211	+	0	NA	Intergenic	Intergenic	-120124	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA	0.724	0.775	1.031	0.565	1.372	0.624	0.848	0.147	0.050	0.699	0.199	0.464	0.477	0.160	0.078	0.278	0.306	0.257	0.285	0.691	0.726	5.259	1.837	0.115	0.117	0.097	0.152	0.727	0.684	0.198	0.098	0.121	0.139	2.597	2.424	0.187	0.248	1.443	0.846	0.041	0.069	0.618	0.051	0.848	0.464	0.127	0.022	0.030	0.038
3999	chr19	18833609	18850433	+	0	NA	intron (NM_001098482, intron 1 of 14)	MLT1C|LTR|ERVL-MaLR	47596	NM_001098482	23373	Hs.371096	NM_015321	ENSG00000105662	CRTC1	MECT1|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding	1.835	1.343	2.607	0.204	0.355	0.191	0.233	0.101	0.147	0.139	0.127	0.405	0.423	0.052	0.048	0.715	1.180	0.254	0.342	0.975	0.965	0.650	0.338	0.524	0.637	0.556	1.058	1.394	1.659	1.776	1.583	0.271	0.300	0.144	0.179	2.323	7.070	0.710	0.433	1.100	0.308	0.023	0.119	0.233	0.405	0.264	0.271	0.054	2.060
4327	chr2	47706178	47717437	+	0	NA	Intergenic	L1MB5|LINE|L1	-42869	NR_120602	644093	Hs.734158	NR_120602	ENSG00000235760	HCG2040054	-	uncharacterized LOC644093	ncRNA	1.341	nan	1.079	0.116	0.393	0.116	0.110	0.120	0.085	0.131	0.190	0.096	0.691	0.183	0.164	0.330	0.385	0.359	0.417	nan	0.560	0.469	0.144	0.581	0.550	0.558	0.630	0.615	0.629	1.482	0.946	0.170	0.408	0.098	0.085	3.599	8.343	nan	0.333	0.109	0.134	0.017	0.092	0.110	0.096	0.042	0.018	0.053	3.112
6079	chr4	170577612	170586895	+	0	NA	intron (NM_001243374, intron 1 of 11)	intron (NM_001243374, intron 1 of 11)	1040	NM_001243374	1182	Hs.481186	NM_001829	ENSG00000109572	CLCN3	CLC3|ClC-3	chloride voltage-gated channel 3	protein-coding	nan	nan	0.857	1.874	1.188	0.466	0.392	3.506	0.155	0.544	0.317	1.095	0.995	0.188	0.074	4.948	4.840	7.573	12.377	0.649	0.468	3.853	2.412	4.020	4.095	1.738	2.148	2.527	4.293	2.063	1.951	5.231	6.954	1.009	1.417	3.859	4.432	1.296	0.920	0.151	0.309	0.051	2.043	0.392	1.095	0.212	1.050	4.461	0.772
7650	chr8	38028543	38036280	+	0	NA	intron (NR_045493, intron 1 of 3)	AluSx1|SINE|Alu	-1695	NM_001204878	9530	Hs.194726	NM_004874	ENSG00000156735	BAG4	BAG-4|SODD	BCL2 associated athanogene 4	protein-coding	2.511	2.221	nan	9.212	2.901	1.472	1.637	1.653	0.292	1.395	0.804	3.250	5.879	2.877	0.181	3.892	3.685	3.592	5.744	5.926	5.317	4.379	1.678	6.959	7.425	2.763	3.271	2.819	4.082	4.120	3.851	1.369	3.818	2.389	3.091	3.542	4.164	2.885	1.316	1.534	2.084	0.601	0.656	1.637	3.250	0.701	1.950	1.113	1.562
7313	chr7	69287863	69336358	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	248205	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding	nan	nan	nan	0.072	2.993	1.495	0.819	0.347	0.096	1.186	0.761	1.018	0.523	0.090	0.157	0.607	0.481	0.460	0.560	0.666	0.797	2.590	0.987	0.121	0.127	0.568	0.754	0.568	0.432	0.519	0.382	0.319	0.456	3.403	3.998	0.504	1.190	3.214	1.498	0.230	0.221	1.265	0.081	0.819	1.018	0.224	0.117	0.122	0.254
8320	chr9	136738036	136763500	+	0	NA	intron (NM_001134398, intron 2 of 29)	MER5A|DNA|hAT-Charlie	106678	NM_003371	7410	Hs.369921	NM_003371	ENSG00000160293	VAV2	VAV-2	vav guanine nucleotide exchange factor 2	protein-coding	nan	2.950	1.855	3.132	1.473	0.793	0.789	0.315	0.166	2.740	1.379	1.514	3.960	0.102	0.064	0.416	0.711	0.255	0.453	4.505	4.951	nan	1.793	0.311	0.315	0.292	0.517	6.645	6.201	2.089	2.298	0.747	1.153	4.094	4.173	0.413	0.549	2.510	1.303	5.986	0.433	1.640	1.148	0.789	1.514	0.569	3.776	0.695	0.160
3201	chr16	85251638	85272595	+	0	NA	Intergenic	MIRb|SINE|MIR	-54448	NR_038859	197196	Hs.679002	NM_153238	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA	nan	1.061	1.685	1.267	0.621	0.303	3.449	0.510	0.199	0.315	0.243	4.806	3.090	1.113	0.064	0.615	0.911	0.168	0.231	2.428	2.612	0.913	0.274	0.469	0.475	0.757	1.337	1.900	2.110	2.766	2.570	0.291	0.464	0.842	0.866	1.170	2.391	1.926	1.148	2.170	0.514	0.380	0.265	3.449	4.806	1.321	3.165	0.141	0.417
3257	chr17	7135058	7147566	+	0	NA	intron (NM_024297, intron 1 of 4)	CpG	937	NM_001284518	79142	Hs.644724	NM_024297	ENSG00000040633	PHF23	hJUNE-1b	PHD finger protein 23	protein-coding	4.759	2.146	3.124	3.240	4.258	2.545	3.517	1.909	0.250	1.165	0.526	4.287	7.606	11.101	0.379	5.297	6.065	4.795	6.400	8.158	7.305	6.047	2.477	8.037	8.547	3.570	4.901	6.920	9.708	3.441	3.409	1.671	3.047	2.858	3.505	7.350	8.799	2.167	0.963	3.450	2.628	0.671	1.742	3.517	4.287	1.774	3.349	1.446	3.082
6572	chr5	180228794	180238993	+	0	NA	intron (NM_001114617, intron 2 of 2)	intron (NM_001114617, intron 2 of 2)	2924	NM_001114618	4245	Hs.519818	NM_002406	ENSG00000131446	MGAT1	GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT	mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase	protein-coding	2.443	2.468	4.202	2.165	1.529	0.837	0.812	1.707	0.141	1.534	0.659	2.604	7.621	3.665	0.119	2.296	2.516	3.249	4.621	3.504	3.376	3.191	1.578	3.216	3.372	2.346	3.313	3.609	4.336	2.569	2.437	1.625	2.473	2.928	2.823	2.812	5.731	1.351	0.717	1.504	2.866	0.667	1.111	0.812	2.604	0.811	1.987	1.506	2.262
5303	chr22	47121305	47135821	+	0	NA	intron (NM_022766, intron 1 of 12)	L1M5|LINE|L1	5589	NM_022766	64781	Hs.200668	NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding	1.555	1.223	nan	0.484	1.859	1.082	1.436	0.626	0.155	0.941	0.528	2.455	2.033	0.767	0.109	3.522	4.838	1.541	1.939	2.804	2.524	1.600	0.435	1.412	1.400	0.983	1.497	1.822	2.329	1.337	1.493	1.431	2.198	1.269	1.079	0.721	0.710	1.799	1.114	1.580	0.381	0.164	0.607	1.436	2.455	0.770	2.169	1.373	0.265
7306	chr7	66308118	66315844	+	0	NA	promoter-TSS (NR_135738)	promoter-TSS (NR_135738)	-456	NR_135738	101929580	Hs.571342	NR_135738		GTF2IP23	-	general transcription factor IIi pseudogene 23	pseudo	nan	nan	nan	2.889	2.155	1.617	2.919	1.244	0.296	2.942	1.319	3.239	2.959	1.569	0.112	3.481	3.812	2.716	4.292	4.877	4.221	9.673	5.092	4.927	5.050	1.769	2.192	4.506	5.494	2.281	2.385	1.408	2.310	4.041	3.544	2.071	2.613	6.235	3.001	0.784	1.959	0.370	1.000	2.919	3.239	0.590	2.586	0.581	0.546
3621	chr17	80053153	80065379	+	0	NA	TTS (NM_198082)	TTS (NM_198082)	-3160	NM_004104	2194	Hs.83190	NM_004104	ENSG00000169710	FASN	FAS|OA-519|SDR27X1	fatty acid synthase	protein-coding	5.488	4.536	6.063	3.435	3.870	2.148	6.254	2.185	0.453	2.312	1.044	3.339	4.681	2.853	0.130	5.713	nan	1.815	3.217	nan	3.327	4.464	1.886	7.388	7.390	2.487	3.645	5.044	7.100	5.934	7.627	3.119	6.062	4.333	3.265	4.329	4.899	2.447	1.287	1.359	4.032	1.045	1.483	6.254	3.339	1.136	3.651	1.649	2.630
8278	chr9	129880911	129897424	+	0	NA	intron (NM_001190728, intron 7 of 16)	L1MEf|LINE|L1	-4123	NM_012098	23452	Hs.653262	NM_012098	ENSG00000136859	ANGPTL2	ARP2|HARP	angiopoietin like 2	protein-coding	nan	nan	3.711	0.303	0.403	0.233	0.924	0.228	0.080	0.181	0.101	0.457	nan	0.046	0.052	0.357	0.452	0.193	0.368	0.858	0.833	0.696	0.208	0.734	0.825	2.187	nan	2.326	4.462	6.811	8.562	0.241	0.291	2.617	2.793	1.215	2.163	nan	0.992	0.737	1.860	1.260	0.288	0.924	0.457	1.983	2.214	0.079	0.761
2726	chr14	89644213	89660103	+	0	NA	intron (NM_005197, intron 4 of 5)	intron (NM_005197, intron 4 of 5)	231296	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding	2.552	1.132	nan	1.437	0.795	0.465	1.077	0.345	0.152	1.090	0.480	2.752	1.137	0.094	0.101	0.874	1.419	0.246	0.495	1.711	1.903	2.251	2.716	0.471	0.526	2.863	3.766	1.513	2.531	1.858	1.970	0.194	0.394	3.454	3.192	0.462	0.662	nan	1.513	0.325	0.209	1.179	2.326	1.077	2.752	0.082	0.095	0.087	0.171
7193	chr7	20542263	20560369	+	0	NA	Intergenic	Intergenic	-103929	NM_001163941	340273	Hs.404102	NM_178559	ENSG00000004846	ABCB5	ABCB5alpha|ABCB5beta|EST422562	ATP binding cassette subfamily B member 5	protein-coding	1.004	0.996	0.959	0.150	0.321	0.230	0.507	0.104	0.125	0.167	0.230	0.155	0.576	0.060	0.190	0.569	0.474	0.171	nan	0.473	0.506	0.388	0.178	0.247	0.247	4.413	4.123	0.438	0.665	0.614	0.464	0.130	0.219	0.405	0.338	0.441	nan	0.824	0.528	0.425	0.078	0.131	0.499	0.507	0.155		0.102	0.033	0.238
441	chr1	109674726	109683886	+	0	NA	intron (NM_001284352, intron 1 of 20)	intron (NM_001284352, intron 1 of 20)	22721	NM_001267048	57535	Hs.708190	NM_020775	ENSG00000116299	KIAA1324	EIG121	KIAA1324	protein-coding	1.214	nan	nan	1.477	0.654	0.380	0.442	0.442	0.072	0.496	0.161	1.589	0.568	0.144	0.129	0.463	0.568	0.243	0.355	1.379	nan	8.812	2.772	0.424	0.438	2.094	2.493	nan	nan	0.378	0.268	1.021	1.028	0.436	0.496	0.498	nan	1.985	0.939	0.383	0.668	0.051	0.078	0.442	1.589	0.185	0.101	1.038	0.175
6182	chr5	14184196	14206274	+	0	NA	intron (NM_007118, intron 1 of 56)	L1MC4|LINE|L1	51424	NM_007118	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding	nan	nan	nan	1.208	1.094	0.600	0.852	2.643	0.357	1.478	0.819	0.619	nan	0.502	0.135	0.511	0.525	0.458	0.746	2.010	1.774	1.188	0.337	0.232	0.197	nan	2.167	3.567	4.469	1.185	0.999	0.522	0.875	0.857	1.197	0.303	nan	3.680	2.205	0.730	0.846	0.089	0.036	0.852	0.619	0.128	1.480	0.392	0.169
7430	chr7	107963007	108027754	+	0	NA	intron (NM_005010, intron 2 of 27)	L1M5|LINE|L1	101461	NM_001193584	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding	nan	1.074	1.433	0.315	0.600	0.305	0.782	0.119	0.097	0.409	0.323	0.941	0.510	0.084	0.151	0.419	0.339	0.300	0.482	0.774	0.897	2.692	0.811	0.386	0.386	0.475	0.714	0.848	0.810	0.628	0.304	0.332	0.492	1.230	1.991	1.168	nan	1.051	0.776	1.041	0.861	0.299	0.576	0.782	0.941	0.155	0.208	0.190	0.677
7047	chr6	151709841	151713646	+	0	NA	intron (NM_020861, intron 1 of 2)	CpG	1092	NM_020861	57621	Hs.520073	NM_020861	ENSG00000181472	ZBTB2	ZNF437	zinc finger and BTB domain containing 2	protein-coding	9.304	4.800	8.255	9.277	8.570	4.952	10.934	5.117	0.370	2.378	1.053	9.796	14.395	9.376	0.244	10.807	11.389	13.013	14.472	13.173	nan	14.789	6.908	18.043	18.889	3.730	5.042	8.459	12.969	13.012	15.696	4.760	10.601	8.854	8.428	9.847	10.548	2.137	1.284	6.958	8.024	2.166	5.730	10.934	9.796	2.467	5.064	3.481	4.399
4041	chr19	37957029	37961597	+	0	NA	promoter-TSS (NM_001321992)	promoter-TSS (NM_001321992)	639	NM_001300993	148268	Hs.126962	NM_144694	ENSG00000171827	ZNF570	-	zinc finger protein 570	protein-coding	4.588	2.535	1.339	7.324	3.429	1.687	1.961	1.683	0.247	0.858	0.600	4.389	22.089	7.690	0.153	2.227	3.058	3.355	4.643	7.573	5.889	5.708	1.150	9.961	10.194	1.895	2.968	4.170	5.183	nan	5.397	1.403	4.218	4.952	3.494	2.256	3.608	4.209	1.860	3.537	4.528	0.793	1.725	1.961	4.389	0.938	3.462	1.274	0.971
672	chr1	174958765	174978552	+	0	NA	promoter-TSS (NM_014412)	promoter-TSS (NM_014412)	87	NM_001007214	27101	Hs.508524	NM_014412	ENSG00000116161	CACYBP	GIG5|PNAS-107|S100A6BP|SIP	calcyclin binding protein	protein-coding	nan	nan	nan	1.940	2.280	1.476	1.921	1.426	0.236	1.433	0.730	1.632	3.670	1.457	0.090	3.173	3.089	5.249	7.267	nan	5.194	3.115	2.153	3.647	3.959	2.663	3.233	3.966	5.639	3.013	2.891	3.286	4.888	2.401	2.723	3.543	nan	1.966	1.100	1.349	2.338	0.389	1.040	1.921	1.632	0.452	0.813	1.128	0.863
7644	chr8	37551760	37562670	+	0	NA	3' UTR (NM_025069, exon 2 of 2)	3' UTR (NM_025069, exon 2 of 2)	3946	NM_025069	80139	Hs.288042	NM_025069	ENSG00000183779	ZNF703	NLZ1|ZEPPO1|ZNF503L|ZPO1	zinc finger protein 703	protein-coding	2.241	2.187	nan	3.472	1.636	0.911	1.729	1.523	0.169	0.189	0.195	3.776	4.694	0.936	0.102	0.280	0.389	1.743	3.345	4.213	3.727	0.502	0.197	0.249	0.292	0.865	1.113	1.821	2.276	1.744	1.878	0.322	0.860	3.732	3.152	0.628	1.697	1.510	0.777	0.676	1.745	1.828	0.452	1.729	3.776	0.401	2.141	0.100	0.500
4257	chr2	24618493	24628531	+	0	NA	Intergenic	Intergenic	-40115	NM_006277	50618	Hs.432562	NM_006277	ENSG00000198399	ITSN2	PRO2015|SH3D1B|SH3P18|SWA|SWAP	intersectin 2	protein-coding	0.871	0.858	0.723	2.367	0.455	0.223	1.733	0.097	0.147	0.954	0.554	0.843	3.523	0.141	0.152	0.924	0.777	0.487	0.590	0.906	1.134	6.751	3.349	0.897	1.053	0.314	0.500	4.772	nan	0.626	0.376	0.836	0.988	0.711	0.876	0.233	0.462	3.607	1.747	0.097	0.570	0.086	0.134	1.733	0.843	0.048	0.665	0.729	0.099
3806	chr18	48230136	48255444	+	0	NA	intron (NM_001292040, intron 3 of 3)	intron (NM_001292040, intron 3 of 3)	103644	NM_001127176	83876	Hs.30495	NM_031939	ENSG00000134042	MRO	B29|C18orf3	maestro	protein-coding	nan	1.040	1.090	0.343	0.810	0.425	1.083	0.051	0.019	0.237	0.086	0.351	0.890	0.056	0.060	0.574	0.493	0.268	0.385	1.366	1.421	3.568	1.019	0.166	0.185	0.223	0.433	0.969	0.941	0.842	0.686	0.235	0.271	1.051	1.025	0.758	nan	4.034	2.306	1.299	0.531	0.204	0.198	1.083	0.351	0.212	0.053	0.051	0.927
3689	chr18	22209033	22241787	+	0	NA	intron (NR_040033, intron 1 of 2)	intron (NR_040033, intron 1 of 2)	17264	NR_040033	729950	Hs.585850	NR_040033	ENSG00000265485	LINC01915	-	long intergenic non-protein coding RNA 1915	ncRNA	1.919	1.021	1.828	0.107	0.657	0.416	0.832	0.073	0.058	0.076	0.119	0.339	0.853	0.069	0.082	1.235	1.555	0.224	nan	3.506	3.875	0.254	0.169	0.113	0.131	0.841	1.084	0.430	0.398	2.877	3.115	0.193	0.227	0.617	0.674	2.006	7.247	1.268	1.165	1.402	0.179	0.160	0.288	0.832	0.339	0.404	0.204	0.051	4.598
5858	chr4	31100246	31133528	+	0	NA	intron (NM_001173523, intron 2 of 2)	intron (NM_001173523, intron 2 of 2)	-55879	NR_125935	102723778	Hs.210739	NR_125935	ENSG00000251182	LOC102723778	-	uncharacterized LOC102723778	ncRNA	0.559	0.558	0.555	0.203	0.308	0.165	0.093	0.172	0.092	0.240	0.238	0.187	0.211	0.043	0.076	0.363	0.244	0.193	0.243	0.236	0.280	4.380	1.691	0.229	0.197	0.445	0.661	0.454	0.349	0.375	0.149	0.108	0.197	0.411	0.479	0.238	0.548	0.786	0.588	0.015	0.054	0.097	0.041	0.093	0.187	0.006	0.033	0.033	0.036
5391	chr3	64112744	64130656	+	0	NA	intron (NM_198859, intron 7 of 7)	intron (NM_198859, intron 7 of 7)	32554	NR_046701	100874242	Hs.668874	NR_046701		PRICKLE2-AS2	-	PRICKLE2 antisense RNA 2	ncRNA	1.521	nan	1.308	0.117	0.299	0.086	0.214	0.136	0.109	0.139	0.115	0.089	0.272	0.037	0.069	0.192	0.100	0.295	0.586	0.265	0.342	0.434	0.145	0.085	0.166	0.932	1.122	0.309	0.457	1.473	1.376	0.133	0.280	0.450	0.421	1.256	5.687	0.574	0.416	0.062	0.069	0.139	0.089	0.214	0.089	0.521	0.290	0.088	3.258
751	chr1	192774957	192779825	+	0	NA	promoter-TSS (NM_002923)	promoter-TSS (NM_002923)	-778	NM_002923	5997	Hs.78944	NM_002923	ENSG00000116741	RGS2	G0S8	regulator of G-protein signaling 2	protein-coding	1.579	nan	4.716	1.858	0.835	0.630	1.625	0.513	0.197	1.739	0.736	1.180	5.441	0.947	0.125	2.220	2.307	11.167	12.307	4.812	3.556	5.324	2.210	18.644	17.830	2.804	nan	3.299	5.813	2.580	3.126	0.797	1.876	2.156	1.532	4.361	4.476	1.838	1.582	0.251	0.168	0.157	0.114	1.625	1.180	0.459	3.385	0.604	1.507
1746	chr11	133205707	133218634	+	0	NA	intron (NM_001012393, intron 1 of 7)	intron (NM_001012393, intron 1 of 7)	190337	NM_001012393	4978	Hs.4817	NM_002545	ENSG00000183715	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule like	protein-coding	0.390	nan	0.450	0.061	0.142	0.037	2.088	0.029	0.012	0.287	0.171	0.108	nan	0.042	0.113	0.571	0.509	0.097	0.123	0.763	0.821	6.347	1.521	0.084	0.077	0.174	0.312	0.251	0.306	0.291	0.213	0.333	0.595	0.085	0.168	0.067	0.141	0.418	0.490	0.026	0.063	0.007	1.324	2.088	0.108	0.015	0.023	0.092	0.029
7224	chr7	27221434	27229721	+	0	NA	promoter-TSS (NM_005523)	promoter-TSS (NM_005523)	550	NR_002795	221883	Hs.587427	NR_002795	ENSG00000240990	HOXA11-AS	HOXA-AS5|HOXA11-AS1|HOXA11AS|HOXA11S|NCRNA00076	HOXA11 antisense RNA	ncRNA	12.518	1.416	1.483	0.405	0.579	0.368	0.400	0.576	0.174	1.175	0.760	0.623	1.273	0.932	0.139	1.648	2.168	2.785	nan	2.583	2.176	2.999	0.553	0.739	0.773	3.209	4.238	1.739	1.753	1.341	1.522	2.325	3.986	3.688	2.818	0.567	nan	2.458	1.470	1.525	0.685	1.214	0.361	0.400	0.623	0.918	0.137	1.157	0.761
4551	chr2	155548875	155574253	+	0	NA	intron (NM_001260508, intron 1 of 1)	intron (NM_001260508, intron 1 of 1)	6471	NM_001260509	3760	Hs.591606	NM_002239	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	potassium voltage-gated channel subfamily J member 3	protein-coding	nan	0.716	nan	0.145	0.462	0.322	0.161	0.105	0.025	0.536	0.535	0.231	0.959	0.009	0.079	0.351	0.228	0.191	0.226	0.164	0.214	0.959	0.370	3.566	3.496	5.574	6.686	0.272	0.296	10.804	11.120	0.134	0.255	1.188	1.063	0.393	0.831	0.364	0.342	0.018	0.066	0.323	0.138	0.161	0.231	0.996	0.139	0.074	0.142
4300	chr2	40420666	40435814	+	0	NA	intron (NM_021097, intron 1 of 9)	intron (NM_021097, intron 1 of 9)	229204	NM_001112801	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding	1.397	nan	1.378	0.149	0.200	0.232	0.300	0.154	0.064	0.165	0.241	0.135	0.299	0.047	0.134	0.357	0.259	0.208	0.445	nan	0.445	0.687	0.289	0.261	0.200	0.752	1.189	0.421	0.367	0.418	0.162	0.091	0.179	0.076	0.148	2.240	7.540	nan	0.394	0.128	0.200	0.007	0.105	0.300	0.135	0.025	0.027	0.046	2.654
3356	chr17	30675927	30680038	+	0	NA	TTS (NR_030362)	TTS (NR_030362)	825	NM_001032293	7756	Hs.500775	NM_003457	ENSG00000010244	ZNF207	BuGZ|hBuGZ	zinc finger protein 207	protein-coding	nan	4.237	3.624	3.352	7.337	4.501	3.928	4.358	0.492	1.720	1.016	5.876	9.692	9.829	0.350	10.463	8.161	10.372	13.928	nan	9.353	10.740	5.817	21.701	23.299	6.083	7.365	8.975	13.090	16.014	15.949	6.399	9.536	7.292	10.710	12.892	10.569	4.399	2.421	4.023	2.848	1.023	2.517	3.928	5.876	1.750	2.169	2.055	2.520
2275	chr13	39515441	39529011	+	0	NA	Intergenic	Intergenic	42770	NM_145286	161003	Hs.327794	NM_145286	ENSG00000133115	STOML3	Epb7.2l|SRO	stomatin like 3	protein-coding	0.755	1.009	0.967	0.069	0.100	0.024	0.364	0.093		0.196	0.088	0.147	0.271	0.062	0.082	0.573	0.358	0.131	0.164	0.365	0.413	2.557	0.824	0.146	0.139	0.221	0.497	0.105	0.101	0.365	0.155	0.165	0.294	1.994	4.567	0.290	0.480	0.441	0.422	0.012	0.113	0.496	0.187	0.364	0.147	0.022	0.255	0.052	0.082
5532	chr3	128025647	128049705	+	0	NA	intron (NM_021937, intron 4 of 6)	intron (NM_021937, intron 4 of 6)	-144761	NR_037890	285224	Hs.683815	NR_037890	ENSG00000242049	DNAJB8-AS1	-	DNAJB8 antisense RNA 1	ncRNA	1.612	nan	1.527	0.336	0.430	0.227	0.214	0.222	0.154	0.606	0.290	0.552	0.374	0.054	0.072	0.460	0.768	0.336	0.363	0.903	0.888	5.127	1.331	0.454	0.469	0.506	nan	1.557	1.490	1.235	1.681	0.465	0.519	0.470	0.469	0.388	0.635	1.079	0.654	0.306	0.302	0.083	0.216	0.214	0.552	0.424	0.055	0.058	0.175
907	chr1	228718087	228785540	+	0	NA	TTS (NR_106988).5	TTS (NR_106988).5	1004	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA	2.773	nan	7.295	3.712	6.460	3.530	3.793	0.414	0.351	0.861	0.660	0.630	5.185	6.700	0.406	1.455	1.511	1.472	3.426	2.242	nan	2.528	0.645	3.203	3.075	3.282	4.717	1.036	1.146	3.359	3.048	1.363	1.900	0.814	0.886	1.159	2.773	1.238	0.769	0.686	0.689	0.343	0.378	3.793	0.630	0.760	1.234	0.488	1.615
5925	chr4	68563889	68568976	+	0	NA	promoter-TSS (NR_015439)	promoter-TSS (NR_015439)	457	NM_018227	55236	Hs.212774	NM_018227	ENSG00000033178	UBA6	E1-L2|MOP-4|UBE1L2	ubiquitin like modifier activating enzyme 6	protein-coding	nan	nan	2.046	3.756	2.960	1.987	2.041	1.453	0.033	2.032	1.134	2.837	4.697	1.238	0.097	2.990	3.645	3.623	5.440	3.756	3.176	14.351	7.124	10.268	10.130	1.916	2.320	7.999	10.936	3.093	2.572	1.138	2.430	2.589	3.122	1.770	2.227	2.640	1.896	1.694	1.924	0.393	1.482	2.041	2.837	0.132	2.389	1.342	0.437
7257	chr7	37039064	37051866	+	0	NA	intron (NR_104120, intron 2 of 2)	intron (NR_104120, intron 2 of 2)	8064	NR_104120	100861514	Hs.627775	NR_104120	ENSG00000224101	ELMO1-AS1	-	ELMO1 antisense RNA 1	ncRNA	2.467	0.902	2.487	0.158	0.230	0.200	0.437	0.113	0.161	0.147	0.247	0.810	0.390	0.034	0.153	6.361	5.850	3.556	2.111	0.560	nan	0.705	0.289	3.534	3.437	3.152	nan	nan	nan	1.843	1.812	2.345	3.856	0.420	0.299	0.273	nan	0.795	0.652	0.022	0.172	0.044	0.354	0.437	0.810	0.880	0.294	2.409	0.193
1868	chr12	24680693	24719130	+	0	NA	intron (NM_001261414, intron 1 of 16)	HAL1|LINE|L1	15613	NM_152989	6660	Hs.434948	NM_006940	ENSG00000134532	SOX5	L-SOX5|L-SOX5B|L-SOX5F|LAMSHF	SRY-box 5	protein-coding	nan	nan	nan	0.582	0.960	0.435	0.522	0.066	0.059	0.207	0.183	0.441	1.066	3.882	0.158	0.355	0.347	0.289	0.407	1.474	1.292	0.218	0.107	0.725	0.797	0.275	0.356	0.548	0.760	0.570	0.369	0.187	0.421	1.711	2.099	1.431	2.911	0.603	0.530	0.030	0.341	0.387	0.400	0.522	0.441	0.023	0.135	0.114	0.196
3480	chr17	57428128	57488357	+	0	NA	intron (NM_001005404, intron 2 of 4)	MIR3|SINE|MIR	14798	NR_039882	100616204		NR_039882	ENSG00000263857	MIR4729	-	microRNA 4729	ncRNA	2.231	1.526	1.522	0.678	1.883	0.904	0.417	0.912	0.291	0.883	0.301	1.728	0.901	0.116	0.108	3.800	4.018	0.475	0.470	1.333	1.558	1.595	0.630	nan	0.697	0.936	1.394	nan	nan	3.126	2.785	2.109	3.609	0.738	0.664	0.982	2.730	1.278	0.849	0.131	1.672	0.205	0.182	0.417	1.728	0.549	0.280	3.581	1.274
6925	chr6	119493213	119504700	+	0	NA	3' UTR (NM_005907, exon 13 of 13)	3' UTR (NM_005907, exon 13 of 13)	-28598	NM_001100411	79632	Hs.443789	NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding	nan	0.893	nan	0.176	0.245	0.137	0.222	0.157	0.085	0.096	0.130	0.031	0.304	0.028	0.112	5.499	2.668	8.516	2.829	0.185	nan	nan	0.043	0.443	0.467	0.587	nan	0.281	0.244	0.501	0.152	0.308	0.602	0.192	0.194	0.231	nan	0.357	0.294	0.010	0.077		0.164	0.222	0.031	0.093	0.026	0.156	0.095
3154	chr16	62590948	62597856	+	0	NA	Intergenic	Intergenic	-523663	NM_001796	1006	Hs.368322	NM_001796	ENSG00000150394	CDH8	Nbla04261	cadherin 8	protein-coding	nan	nan	0.391	0.088	0.292	0.117	0.092	0.055	0.069	0.023	0.059		0.121	0.016	0.053	1.608	0.816	6.390	0.927	0.113	0.151	0.063	0.114	1.882	1.709	0.245	nan	0.181	0.125	0.326	0.100	0.286	0.542	0.070	0.074	0.099	0.229	0.453	0.423	0.081	0.039	0.001	0.047	0.092			0.030	0.216	0.018
5812	chr3	197280766	197283700	+	0	NA	intron (NM_203314, intron 1 of 7)	CpG	625	NM_203314	622	Hs.274539	NM_004051	ENSG00000161267	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase 1	protein-coding	7.778	5.479	3.392	7.679	8.810	5.094	5.524	2.004	0.452	4.208	2.135	7.101	nan	1.297	0.096	6.233	7.842	5.196	8.127	8.534	6.439	15.894	6.613	15.693	15.069	3.152	5.040	10.611	19.000	9.221	11.905	5.389	9.359	7.466	5.673	8.252	9.308	3.846	2.253	2.093	7.015	0.518	10.592	5.524	7.101	2.029	2.196	3.611	4.931
664	chr1	173368723	173401197	+	0	NA	intron (NR_037845, intron 2 of 2)	intron (NR_037845, intron 2 of 2)	45541	NR_125960	101928673	Hs.674889	NR_125960	ENSG00000203739	LOC101928673	-	uncharacterized LOC101928673	ncRNA	nan	nan	nan	0.135	0.263	0.178	0.366	0.547	0.173	0.183	0.212	0.088	0.311	0.057	0.139	1.028	1.157	3.022	3.857	nan	0.685	0.314	0.110	0.482	0.520	0.413	0.744	0.359	0.299	0.497	0.293	1.600	2.070	0.120	0.133	0.599	nan	0.644	0.628	0.043	0.160	0.023	0.310	0.366	0.088	0.058	0.158	1.130	0.224
5639	chr3	167448305	167460428	+	0	NA	intron (NM_005025, intron 1 of 8)	intron (NM_005025, intron 1 of 8)	855	NM_005025	5274	Hs.478153	NM_005025	ENSG00000163536	SERPINI1	PI12|neuroserpin	serpin family I member 1	protein-coding	1.952	2.158	2.313	1.979	1.922	0.743	0.644	0.903	0.166	2.239	1.335	0.757	2.970	0.814	0.090	1.306	1.871	1.765	2.296	4.038	2.812	6.065	1.998	2.456	2.688	1.047	1.466	nan	3.264	nan	3.115	0.602	1.384	3.410	4.334	1.800	2.504	1.652	0.924	0.866	1.142	0.725	0.599	0.644	0.757	0.266	1.521	0.343	0.706
1790	chr12	6558100	6569015	+	0	NA	intron (NM_018009, intron 3 of 6)	AluSx1|SINE|Alu	2380	NM_018009	55080	Hs.504597	NM_018009	ENSG00000139192	TAPBPL	TAPBP-R|TAPBPR	TAP binding protein like	protein-coding	2.609	nan	nan	4.149	1.935	1.058	1.723	0.679	0.099	1.976	0.906	2.630	5.091	1.251	0.136	1.561	2.030	2.333	2.911	nan	5.820	8.587	3.312	4.723	4.852	0.271	0.469	2.667	3.045	6.196	6.288	2.277	2.250	2.672	2.193	2.014	nan	1.400	0.736	4.136	3.907	0.462	0.389	1.723	2.630	2.893	1.044	1.074	2.031
2264	chr13	34441568	34451060	+	0	NA	intron (NM_181558, intron 8 of 8)	intron (NM_181558, intron 8 of 8)	54108	NM_181558	5983	Hs.115474	NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C subunit 3	protein-coding	1.078	1.054	3.039	0.195	0.148	0.133	0.194	0.144	0.079	2.242	0.672	5.934	2.147	0.034	0.072	1.031	1.714	0.196	0.327	2.360	3.409	4.961	4.169	0.234	0.226	0.795	1.067	0.431	0.416	3.001	1.951	0.452	1.160	0.730	1.256	0.914	1.843	3.117	1.212	0.129	0.107	0.302	0.566	0.194	5.934	0.184	0.833	0.240	2.707
6920	chr6	118683465	118705965	+	0	NA	Intergenic	Intergenic	-127821	NR_002730	23629	Hs.648050	NR_002730		BRD7P3	BP75	bromodomain containing 7 pseudogene 3	pseudo	nan	1.897	nan	2.719	0.544	0.313	1.350	0.341	0.135	1.518	0.599	0.292	7.338	0.045	0.111	0.470	0.282	0.248	0.254	3.342	nan	nan	0.297	0.311	0.267	0.327	nan	3.751	3.953	0.962	0.914	0.154	0.177	1.352	1.754	0.154	nan	2.171	1.008	6.304	1.812	0.294	0.038	1.350	0.292	0.064	1.066	0.026	0.093
1420	chr11	51571921	51591682	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	66519	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding	11.365	12.897	10.795	5.293	9.434	6.080	6.083	4.222	7.976	6.331	9.251	4.002	13.417	5.600	9.605	10.989	6.555	6.512	8.621	8.340	9.734	3.983	3.403	6.808	6.602	6.818	8.237	6.098	5.308	10.733	4.533	5.570	8.358	3.243	5.043	4.266	5.284	5.024	6.482	1.423	2.739	2.860	2.388	6.083	4.002	2.488	1.529	2.941	1.932
3437	chr17	46202244	46242997	+	0	NA	intron (NM_001075099, intron 11 of 12)	intron (NM_001075099, intron 11 of 12)	11253	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA	1.007	1.467	nan	0.392	3.349	1.670	0.182	0.110	0.087	1.586	0.803	0.920	0.794	0.157	0.121	0.604	0.806	0.166	0.268	0.815	nan	3.006	0.962	0.548	0.583	0.199	0.389	4.938	5.499	1.147	0.655	0.452	0.605	1.215	0.901	0.997	3.286	1.434	0.818	0.210	0.485	0.367	0.061	0.182	0.920	0.107	0.631	0.201	0.665
2502	chr14	26673218	26689626	+	0	NA	Intergenic	Intergenic	385538	NM_006491	4857	Hs.31588	NM_002515	ENSG00000139910	NOVA1	Nova-1	NOVA alternative splicing regulator 1	protein-coding	nan	0.639	1.376	0.275	0.115	0.070	0.178	0.137	0.119	0.221	0.172	0.194	0.278	0.060	0.115	0.180	0.065	0.256	0.375	0.266	0.343	0.469	0.179	0.208	0.182	4.203	4.836	0.721	nan	0.933	0.536	0.073	0.139	0.118	0.097	0.199	0.319	0.423	0.357	0.051	0.149	0.017	0.049	0.178	0.194	0.023	0.210	0.037	0.067
126	chr1	20807413	20821837	+	0	NA	Intergenic	MIRc|SINE|MIR	-1897	NM_018584	55450	Hs.731383	NM_018584	ENSG00000162545	CAMK2N1	PRO1489	calcium/calmodulin dependent protein kinase II inhibitor 1	protein-coding	2.960	1.679	nan	2.875	2.199	1.142	2.103	0.459	0.056	1.033	0.357	0.100	4.069	0.500	0.106	0.925	2.028	0.406	0.494	2.472	1.913	3.117	1.028	0.297	0.339	0.297	0.647	6.976	8.011	2.808	3.362	0.132	0.187	0.980	0.959	0.451	0.804	2.457	1.334	0.468	2.976	0.244	0.116	2.103	0.100	0.828	0.871	0.014	0.138
6314	chr5	71101715	71110924	+	0	NA	Intergenic	Intergenic	91329	NM_004291	9607	Hs.1707	NM_004291	ENSG00000164326	CARTPT	CART	CART prepropeptide	protein-coding	0.939	nan	0.773	0.104	2.712	1.152	0.279	0.146	0.105	0.258	0.253	0.078	0.532	0.078	0.186	0.226	0.184	0.189	0.332	0.271	0.307	nan	2.111	0.109	0.095	0.583	nan	0.313	0.285	0.505	0.264	0.130	0.208	2.472	2.608	0.260	0.890	1.167	0.699	0.079	0.117	0.423	0.042	0.279	0.078	0.011	0.210	0.032	0.223
2875	chr15	50644786	50649589	+	0	NA	promoter-TSS (NR_026891)	promoter-TSS (NR_026891)	-111	NR_026891	55056	Hs.511316	NM_017976	ENSG00000104064	FLJ10038	-	uncharacterized protein FLJ10038	ncRNA	8.065	5.229	8.174	5.594	7.913	4.805	7.253	6.189	0.486	4.152	2.036	8.703	9.673	6.248	0.180	12.105	10.144	11.613	16.381	10.992	10.785	9.455	5.955	17.676	18.006	8.963	9.972	10.267	17.364	20.373	21.199	10.916	14.975	11.689	13.916	13.529	9.401	5.443	3.386	4.060	4.165	1.900	3.452	7.253	8.703	2.412	4.502	3.611	4.032
5819	chr4	1865749	1876446	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2026	NM_001042424	7468	Hs.113876	NM_007331	ENSG00000109685	NSD2	KMT3F|KMT3G|MMSET|REIIBP|TRX5|WHS|WHSC1	nuclear receptor binding SET domain protein 2	protein-coding	3.519	2.183	nan	5.922	4.462	2.398	3.257	1.317	0.226	3.939	1.433	3.986	5.022	1.806	0.103	3.932	3.884	3.932	4.902	4.486	4.092	8.242	3.645	7.984	7.065	1.433	2.073	7.289	10.803	4.128	4.128	2.069	3.850	3.377	2.997	3.410	3.432	nan	1.662	2.533	6.002	0.603	2.430	3.257	3.986	0.572	0.901	1.077	1.591
1533	chr11	76770407	76802649	+	0	NA	intron (NM_004055, intron 1 of 12)	MIRc|SINE|MIR	8536	NM_004055	726	Hs.248153	NM_004055	ENSG00000149260	CAPN5	ADNIV|HTRA3|VRNI|nCL-3	calpain 5	protein-coding	nan	0.699	0.734	0.426	0.415	0.151	0.200	0.237	0.096	0.120	0.105	0.423	1.190	0.266	0.115	0.670	0.784	0.384	0.504	0.992	1.012	0.913	0.309	4.411	4.622	1.101	1.778	2.264	2.450	0.496	0.377	0.604	0.762	0.244	0.289	0.396	0.593	0.887	0.589	0.344	0.342	0.027	0.244	0.200	0.423	0.159	0.393	0.273	0.153
7979	chr8	143072397	143113440	+	0	NA	Intergenic	Intergenic	-13261	NR_130468	100616374		NR_130468	ENSG00000265612	MIR4539	-	microRNA 4539	ncRNA	1.252	0.717	nan	0.073	0.422	0.230	0.340	0.073	0.074	0.038	0.063	0.427	1.015	0.048	0.061	0.230	0.257	0.112	0.152	nan	3.033	nan	0.072	0.136	0.154	0.921	1.167	0.724	0.660	0.749	0.699	0.288	0.336	0.259	0.338	0.282	0.493	0.298	0.325	2.649	0.719	0.044	0.033	0.340	0.427	0.354	0.030	0.065	0.051
651	chr1	168643208	168650762	+	0	NA	Intergenic	Intergenic	51457	NM_001937	1805	Hs.80552	NM_001937	ENSG00000143196	DPT	TRAMP	dermatopontin	protein-coding	0.955	nan	1.139	0.052	0.276	0.166	0.350	0.169	0.086	0.165	0.156	0.095	0.298	0.066	0.106	0.938	0.568	8.274	3.045	0.388	nan	0.751	0.285	0.951	0.964	0.774	1.065	0.338	nan	0.367	0.217	0.340	0.599	0.066	0.101	0.379	0.732	0.511	0.370	0.022	0.095	0.014	0.136	0.350	0.095	0.052	0.043	0.052	0.130
176	chr1	30178491	30184458	+	0	NA	Intergenic	Intergenic	328985	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA	2.016	nan	0.679	1.225	10.865	5.838	5.914	0.025	0.053	1.885	0.745	1.785	13.666	0.055	0.105	0.528	0.736	0.167	0.243	10.000	8.588	nan	0.140	0.126	0.144	0.149	0.364	3.865	3.289	nan	1.831	0.555	0.885	3.446	3.349	0.553	1.115	2.911	nan	4.781	2.041	1.121		5.914	1.785	1.409	2.157	0.762	0.102
4660	chr2	198377695	198382517	+	0	NA	promoter-TSS (NM_199482)	promoter-TSS (NM_199482)	-189	NM_199482	25843	Hs.633165	NM_015387	ENSG00000115540	MOB4	2C4D|CGI-95|MOB1|MOB3|MOBKL3|PHOCN|PREI3	MOB family member 4, phocein	protein-coding	4.061	nan	4.767	5.074	4.475	1.960	2.496	1.755	0.458	1.616	1.077	4.111	9.161	1.735	0.109	3.719	4.121	4.101	5.375	4.851	5.057	4.071	2.005	11.033	11.569	3.330	3.959	5.765	9.377	12.602	13.162	3.398	7.070	2.075	2.374	8.458	12.774	2.366	1.047	1.907	2.078	0.375	1.811	2.496	4.111	1.368	2.863	1.517	7.423
256	chr1	41444203	41452833	+	0	NA	intron (NR_125440, intron 1 of 17)	intron (NR_125440, intron 1 of 17)	3547	NM_001905	1503	Hs.473087	NM_001905	ENSG00000171793	CTPS1	CTPS|IMD24	CTP synthase 1	protein-coding	32.974	2.460	nan	2.441	3.149	1.244	2.919	2.095	0.171	2.604	1.175	3.461	4.497	1.866	0.118	3.059	3.248	2.861	4.188	7.874	7.894	3.273	1.814	5.494	5.909	3.252	nan	nan	11.339	5.510	5.869	4.092	nan	2.302	2.313	4.815	4.298	2.328	1.340	2.592	2.550	0.351	4.368	2.919	3.461	1.005	0.975	2.337	1.582
7613	chr8	20484423	20490519	+	0	NA	Intergenic	L2c|LINE|L2	-323673	NR_130773	102467222	Hs.444226	NR_130773	ENSG00000253147	LOC102467222	-	uncharacterized LOC102467222	ncRNA	nan	2.673	nan	0.087	2.125	1.029	0.414	0.049		1.435	0.767	0.039	1.612	0.036	0.110	3.169	7.705	0.117	0.146	nan	3.384	nan	0.482	0.159	0.046	0.152	0.195	5.096	5.024	0.660	0.624	0.431	0.542	0.670	0.637	0.395	0.994	nan	nan	4.545	0.220	0.201	0.103	0.414	0.039		2.626	0.552	0.203
2810	chr14	106444264	106465740	+	0	NA	Intergenic	L1MCb|LINE|L1	-16644	NR_002224	8755	Hs.662288	NR_002224	ENSG00000271968	ADAM6	C14orf96|tMDCIV	ADAM metallopeptidase domain 6 (pseudogene)	pseudo	1.648	0.798	2.616	0.078	0.214	0.075	0.142	0.087	0.172	0.088	0.114	0.044	0.280	0.024	0.103	0.362	0.275	0.125	0.200	0.236	0.343	0.346	0.173	0.093	0.061	0.723	1.160	0.300	0.554	1.133	0.839	0.218	0.256	1.408	3.756	0.097	0.105	0.102	0.111	0.521	0.063	0.298	0.055	0.142	0.044	0.362	0.028	0.069	0.012
6704	chr6	31586801	31590731	+	0	NA	intron (NM_080686, intron 1 of 30).4	CpG	316	NM_004638	7916	Hs.123239	NM_004638	ENSG00000204469	PRRC2A	BAT2|D6S51|D6S51E|G2	proline rich coiled-coil 2A	protein-coding	nan	3.921	5.476	8.004	7.176	4.352	8.074	4.074	0.288	3.089	1.302	10.071	14.426	8.013	0.238	9.346	9.150	11.870	15.218	nan	10.680	10.215	5.469	22.973	24.206	5.807	7.533	12.339	17.558	9.724	9.389	5.724	8.411	8.709	9.866	8.589	9.846	5.506	2.091	5.813	3.816	1.355	3.430	8.074	10.071	2.445	3.123	5.080	2.800
4840	chr20	7716124	7724994	+	0	NA	Intergenic	L1M5|LINE|L1	200534	NM_017545	54363	Hs.193640	NM_017545	ENSG00000101323	HAO1	GOX|GOX1|HAOX1	hydroxyacid oxidase 1	protein-coding	0.847	1.322	0.676	0.224	0.407	0.232	0.303	0.076	0.060	1.023	0.343	0.514	0.329	0.037	0.074	0.608	0.436	0.220	0.272	0.338	0.426	4.110	1.043	0.182	0.227	1.036	1.190	2.250	1.124	1.114	0.704	0.260	0.255	4.350	6.094	0.640	1.213	1.426	0.900	0.056	0.121	0.538	0.059	0.303	0.514	0.020	0.902	0.011	0.619
4545	chr2	151244486	151286980	+	0	NA	Intergenic	Intergenic	78476	NM_005168	390	Hs.6838	NM_005168	ENSG00000115963	RND3	ARHE|Rho8|RhoE|memB	Rho family GTPase 3	protein-coding	nan	0.574	nan	0.102	0.321	0.170	0.190	0.211	0.095	0.096	0.087	0.104	0.763	2.075	0.099	0.568	0.649	0.325	0.508	0.483	0.493	0.579	0.148	0.378	0.348	0.605	0.909	0.380	0.247	1.003	0.817	0.185	0.249	0.133	0.130	0.229	0.354	0.328	0.326	1.737	0.412	0.040	0.147	0.190	0.104	0.051	0.040	0.097	0.041
4344	chr2	51097313	51122960	+	0	NA	intron (NM_001135659, intron 5 of 23)	intron (NM_001135659, intron 5 of 23)	149538	NM_001330085	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding	1.065	nan	0.815	0.206	0.477	0.187	0.309	0.109	0.063	0.319	0.279	0.313	0.350	0.034	0.122	0.357	0.205	0.159	0.229	0.357	0.540	0.471	0.199	0.323	0.310	3.125	3.555	0.799	0.816	1.094	0.565	0.127	0.187	1.195	1.691	0.737	2.152	0.359	0.260	0.062	0.207	0.437	0.102	0.309	0.313	0.285	0.052	0.042	0.636
5273	chr22	39914468	39932231	+	0	NA	Intergenic	AluSx|SINE|Alu	5511	NM_194326	91582	Hs.526933	NM_194326	ENSG00000187051	RPS19BP1	AROS|S19BP	ribosomal protein S19 binding protein 1	protein-coding	3.488	nan	3.029	2.737	4.717	2.536	2.650	1.354	0.175	1.562	0.800	5.516	4.845	3.413	0.153	3.999	4.321	3.727	5.139	5.545	5.212	4.949	2.228	3.766	3.714	2.464	nan	5.396	6.632	nan	5.446	1.810	3.246	3.027	4.196	3.003	3.952	2.122	1.086	2.172	2.962	0.836	2.200	2.650	5.516	1.274	2.616	0.964	1.205
6542	chr5	169526806	169535200	+	0	NA	Intergenic	Intergenic	-1914	NM_012188	2299	Hs.87236	NM_012188	ENSG00000168269	FOXI1	FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3	forkhead box I1	protein-coding	nan	0.673	0.706	0.021	0.251	0.114	0.046	0.160	0.057	0.076	0.048	0.043	0.472	0.026	0.067	0.311	0.355	5.229	3.658	0.508	0.358	0.159	0.050	1.551	1.598	0.101	0.231	0.393	0.682	0.411	0.275	0.206	0.292	0.341	0.361	0.080	0.168	1.991	0.955	0.020	0.108	0.068	0.057	0.046	0.043	0.070	0.024	0.118	0.014
1221	chr10	115837677	115843646	+	0	NA	Intergenic	L1MC4a|LINE|L1	36855	NM_000684	153	Hs.99913	NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|RHR	adrenoceptor beta 1	protein-coding	0.467	nan	0.548	0.125	0.385	0.321	0.086	0.145	0.215	0.130	0.081	0.040	0.227	0.023	0.062	0.371	0.382	9.851	3.626	0.120	0.117	5.996	2.292	1.242	1.259	0.219	0.355	0.527	0.578	0.211	0.075	0.186	0.188	0.119	0.201	0.164	0.220	0.303	0.346	0.009	0.057	0.032	0.025	0.086	0.040	0.033	0.068	0.049	0.046
6135	chr5	1630285	1645792	+	0	NA	Intergenic	Intergenic	-3918	NR_003713	728613	Hs.720393	NR_003713		LOC728613	-	programmed cell death 6 pseudogene	pseudo	1.251	1.877	2.841	1.449	1.195	0.640	1.370	0.445	0.262	0.751	0.573	3.921	2.658	0.857	0.125	0.879	1.185	1.229	nan	2.961	2.868	2.171	0.512	0.579	0.612	1.689	2.608	nan	2.477	nan	1.449	0.715	1.041	0.674	0.675	0.360	0.446	1.621	nan	1.456	0.824	0.110	0.198	1.370	3.921	0.544	1.285	0.266	0.120
1200	chr10	103872344	103883683	+	0	NA	intron (NM_001113407, intron 1 of 10)	intron (NM_001113407, intron 1 of 10)	2217	NM_001113407	8861	Hs.454418	NM_003893	ENSG00000198728	LDB1	CLIM-2|CLIM2|LDB-1|NLI	LIM domain binding 1	protein-coding	nan	nan	4.091	1.679	4.484	2.280	2.244	1.667	0.347	1.245	0.773	4.371	6.215	2.377	0.106	3.462	4.700	2.033	2.680	4.879	5.020	2.547	0.897	1.441	1.632	2.404	nan	6.318	6.889	2.305	2.771	1.732	2.713	1.894	1.640	2.894	nan	1.199	0.578	2.792	2.611	0.864	0.832	2.244	4.371	1.036	2.079	1.819	3.400
1757	chr12	858444	865327	+	0	NA	promoter-TSS (NM_018979)	promoter-TSS (NM_018979)	-204	NM_001184985	65125	Hs.744906	NM_014823	ENSG00000060237	WNK1	HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65	WNK lysine deficient protein kinase 1	protein-coding	5.475	nan	nan	8.901	4.650	2.511	3.757	4.443	0.681	3.013	1.842	4.444	10.331	5.199	0.173	2.318	2.962	3.513	4.997	nan	10.900	9.173	3.919	10.424	10.574	6.094	7.455	7.166	10.000	6.561	7.566	3.307	7.647	6.682	5.866	4.990	nan	4.526	2.387	2.506	4.837	1.345	7.128	3.757	4.444	3.128	1.048	2.735	2.930
4193	chr2	6119951	6128655	+	0	NA	intron (NR_026833, intron 2 of 2)	intron (NR_026833, intron 2 of 2)	2193	NR_026833	400940	Hs.378814	NM_207479		LOC400940	-	uncharacterized LOC400940	ncRNA	1.143	0.712	0.784	0.399	1.287	0.701	1.203	0.045	0.037	0.072	0.211	1.106	3.709	0.038	0.114	0.632	0.688	0.381	0.415	3.083	3.135	5.909	2.458	0.005	0.056	0.720	0.685	0.669	1.253	4.014	3.467	0.182	0.208	0.912	0.754	0.293	0.589	0.183	0.243	7.252	5.830	0.142	0.344	1.203	1.106	0.703	0.343	0.057	0.156
918	chr1	232117320	232125888	+	0	NA	intron (NM_001012957, intron 10 of 12)	intron (NM_001012957, intron 10 of 12)	60024	NR_126441	104472714		NR_126441	ENSG00000226758	DISC1-IT1	-	DISC1 intronic transcript 1	ncRNA	1.062	1.555	1.326	0.347	0.611	0.207	0.843	0.169	0.077	0.160	0.183	0.307	0.784	0.038	0.127	0.384	0.332	4.005	11.162	0.533	0.567	nan	1.287	0.248	0.352	0.366	0.708	nan	0.418	0.358	0.192	0.178	0.232	0.149	0.123	0.313	0.527	nan	0.602	0.091	0.072	0.045	0.175	0.843	0.307	0.057	0.213	0.219	0.130
8406	chrX	123091451	123098893	+	0	NA	promoter-TSS (NM_006603)	promoter-TSS (NM_006603)	10	NM_001282418	10735	Hs.496710	NM_006603	ENSG00000101972	STAG2	SA-2|SA2|SCC3B|bA517O1.1	stromal antigen 2	protein-coding	6.981	nan	6.108	5.137	8.373	4.494	5.850	3.533	0.217	4.455	2.331	3.571	11.951	3.208	0.093	6.240	6.714	6.824	7.932	10.925	10.113	6.506	4.001	16.640	17.828	7.347	8.092	8.984	13.587	16.007	16.587	5.233	8.836	7.212	8.660	12.096	10.269	1.715	0.946	3.352	4.802	1.464	3.774	5.850	3.571	1.049	2.211	3.128	4.067
1413	chr11	47484522	47496414	+	0	NA	3' UTR (NM_001172640, exon 13 of 13)	3' UTR (NM_001172640, exon 13 of 13)	-19738	NM_005055	5913	Hs.81218	NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding	nan	2.464	2.440	3.497	1.908	1.084	1.000	0.233	0.108	2.336	1.077	4.835	4.447	0.101	0.129	0.893	1.886	0.519	0.739	9.340	10.019	4.595	1.531	0.495	0.542	1.117	1.747	1.326	2.261	1.476	1.425	0.307	0.506	4.650	5.125	0.411	nan	4.050	1.661	3.937	3.431	1.372	0.280	1.000	4.835	1.127	0.120	0.092	0.136
7539	chr7	150782151	150787838	+	0	NA	intron (NM_001042535, intron 1 of 8)	CpG	1485	NM_001042535	116988	Hs.647075	NM_031946	ENSG00000133612	AGAP3	AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	7.938	1.783	11.596	2.943	1.968	1.247	2.764	1.241	0.122	1.700	1.009	4.737	2.665	3.124	0.176	3.416	5.427	2.912	3.722	5.802	5.287	5.300	1.291	2.945	2.856	2.308	3.697	3.890	5.535	8.439	13.341	2.350	4.630	3.777	2.967	5.492	5.647	3.693	2.232	0.491	3.438	0.705	2.386	2.764	4.737	1.819	2.029	1.327	1.563
7326	chr7	73683412	73705436	+	0	NA	Intergenic	AluJb|SINE|Alu	-9381	NM_032421	7461	Hs.647018	NM_003388	ENSG00000106665	CLIP2	CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4	CAP-Gly domain containing linker protein 2	protein-coding	nan	0.606	0.759	0.261	0.768	0.379	0.558	2.843	1.163	0.277	0.245	0.506	1.285	0.590	0.155	1.095	1.889	1.883	nan	1.204	1.083	0.801	0.326	0.215	0.209	0.387	nan	1.333	nan	0.755	0.567	0.814	1.152	0.234	0.280	0.182	0.263	1.240	0.937	0.306	0.729	0.047	0.346	0.558	0.506	0.220	0.316	0.589	0.073
2107	chr12	103650750	103677878	+	0	NA	intron (NR_103526, intron 6 of 10)	(TTTTTA)n|Simple_repeat|Simple_repeat	118694	NR_126333	101929058	Hs.171310	NR_126333	ENSG00000257860	LOC101929058	-	uncharacterized LOC101929058	ncRNA	0.777	1.697	nan	3.960	5.271	2.762	1.572	0.099	0.119	3.087	1.202	2.180	7.289	0.032	0.122	0.303	0.144	0.150	0.244	2.060	2.391	4.640	2.026	0.150	0.139	0.230	0.387	3.669	3.829	0.435	0.160	0.102	0.198	1.588	1.191	0.211	0.342	4.459	1.966	5.666	1.495	0.235	0.032	1.572	2.180	0.104	1.623	0.025	0.059
6960	chr6	128755400	128806059	+	0	NA	intron (NM_001135648, intron 1 of 30)	intron (NM_001135648, intron 1 of 30)	61090	NM_001291983	5796	Hs.155919	NM_002844	ENSG00000152894	PTPRK	R-PTP-kappa	protein tyrosine phosphatase, receptor type K	protein-coding	1.126	0.814	1.031	0.159	0.462	0.277	0.335	0.212	0.048	0.155	0.130	0.073	0.206	0.066	0.121	0.381	0.295	0.294	0.578	0.295	0.346	1.374	0.720	0.366	0.338	1.245	1.530	0.383	0.439	1.062	0.617	0.123	0.167	2.384	3.014	0.244	0.372	0.439	0.349	0.035	0.066	0.789	0.119	0.335	0.073	0.073	0.044	0.033	0.125
1598	chr11	100547356	100565021	+	0	NA	non-coding (NR_133571, exon 2 of 2)	non-coding (NR_133571, exon 2 of 2)	-2219	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding	1.042	1.068	0.846	0.060	0.532	0.300	0.332	0.498	0.110	0.256	0.186	0.028	1.182	0.086	0.076	0.441	0.375	0.599	1.497	0.642	0.560	0.105	0.083	1.714	1.771	4.232	4.744	0.152	0.180	0.592	0.287	0.153	0.312	0.459	0.445	0.632	1.615	1.731	0.979	0.029	0.060	0.076	0.414	0.332	0.028	0.089	0.812	0.045	0.509
3453	chr17	48905044	48919555	+	0	NA	promoter-TSS (NM_175575)	promoter-TSS (NM_175575)	288	NM_001330341	124857	Hs.211475	NM_175575	ENSG00000173714	WFIKKN2	GASP-1|WFDC20B|WFIKKNRP|hGASP-1	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	2.711	0.991	nan	0.141	0.420	0.252	0.546	0.128	0.066	0.125	0.170	0.145	0.387	0.149	0.107	0.602	0.633	0.278	0.392	0.768	nan	1.281	0.367	0.858	1.015	1.950	2.459	0.456	nan	1.578	1.533	0.394	0.462	0.369	0.366	2.298	7.602	0.627	0.534	0.082	0.103	0.040	1.319	0.546	0.145	0.387	0.325	0.061	2.808
1856	chr12	18293476	18306797	+	0	NA	Intergenic	Intergenic	-57009	NM_024730	79785	Hs.732831	NM_024730	ENSG00000111404	RERGL	-	RERG like	protein-coding	0.802	5.577	0.824	0.401	0.277	0.205	0.459	0.147	0.069	0.130	0.148	0.027	0.937	0.049	0.118	0.187	0.121	0.333	0.528	nan	0.560	0.715	0.263	0.222	0.252	0.569	0.749	0.410	0.434	0.405	0.126	0.101	0.211	0.308	0.339	0.420	0.900	0.423	0.310	0.197	0.046	0.051	0.246	0.459	0.027		0.023	0.037	0.092
1491	chr11	68592585	68615732	+	0	NA	intron (NM_001031847, intron 1 of 18)	AluSx|SINE|Alu	5241	NM_001876	1374	Hs.503043	NM_001876	ENSG00000110090	CPT1A	CPT1|CPT1-L|L-CPT1	carnitine palmitoyltransferase 1A	protein-coding	nan	1.486	1.046	1.129	0.883	0.380	0.697	0.476	0.201	0.237	0.133	1.240	4.524	1.448	0.138	3.198	2.952	0.998	1.666	1.626	1.723	1.395	0.400	4.011	4.028	0.550	0.860	2.563	5.346	0.766	0.508	2.254	3.754	0.194	0.342	0.424	0.543	1.177	0.782	0.557	0.087	0.033	0.862	0.697	1.240	0.182	1.431	1.721	0.058
1804	chr12	7044915	7057225	+	0	NA	3' UTR (NM_001940, exon 10 of 10)	3' UTR (NM_001940, exon 10 of 10)	-1531	NM_001301836	113246	Hs.405913	NM_138425	ENSG00000111678	C12orf57	C10|GRCC10	chromosome 12 open reading frame 57	protein-coding	3.278	nan	nan	9.118	5.260	2.758	2.766	0.572	0.052	2.993	1.343	3.492	9.426	2.675	0.129	3.239	4.529	4.380	5.676	nan	10.289	12.320	7.099	8.060	8.590	3.631	4.196	4.957	7.116	4.779	5.369	4.253	5.512	4.805	4.524	5.078	nan	1.855	1.029	4.167	3.323	0.868	3.909	2.766	3.492	7.934	1.156	1.857	1.780
632	chr1	163763332	163770284	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	-373827	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3 subunit J pseudogene	pseudo	0.911	nan	1.460	1.292	0.731	0.353	0.312	0.108	0.030	0.362	0.202	0.985	0.844	0.078	0.102	0.463	0.354	7.217	3.083	0.912	nan	2.539	0.589	0.145	0.200	0.826	0.918	0.681	nan	0.379	0.144	0.354	0.539	1.024	1.570	0.328	0.642	0.640	0.492	0.024	0.381	0.151	0.160	0.312	0.985	0.029	0.074	0.171	0.145
2357	chr13	80912169	80917613	+	0	NA	promoter-TSS (NM_001318536)	promoter-TSS (NM_001318536)	359	NM_005842	10253	Hs.18676	NM_005842	ENSG00000136158	SPRY2	IGAN3|hSPRY2	sprouty RTK signaling antagonist 2	protein-coding	nan	3.967	6.029	7.187	5.630	2.858	4.822	3.160	0.352	0.941	0.466	3.847	12.024	0.763	0.069	5.712	10.766	6.218	8.976	4.479	2.993	3.097	1.098	4.612	4.484	0.390	0.567	2.307	3.510	1.620	2.379	2.856	7.932	0.194	0.131	0.442	0.713	0.545	0.399	0.052	0.121	0.018	8.415	4.822	3.847	0.053	2.348	1.672	0.228
394	chr1	87791685	87805113	+	0	NA	intron (NM_006769, intron 2 of 4)	intron (NM_006769, intron 2 of 4)	4248	NM_006769	8543	Hs.436792	NM_006769	ENSG00000143013	LMO4	-	LIM domain only 4	protein-coding	4.119	nan	nan	3.914	4.796	2.751	1.995	1.785	0.215	1.563	0.724	2.764	8.790	0.863	0.144	2.835	2.620	3.704	4.582	3.721	2.690	2.143	0.749	6.611	6.482	5.073	6.502	7.039	8.678	1.618	1.590	2.170	3.942	4.362	3.798	2.560	3.491	2.535	1.385	2.229	1.087	1.268	3.755	1.995	2.764	0.333	1.258	1.578	2.105
1371	chr11	33059997	33067459	+	0	NA	intron (NM_001145541, intron 1 of 9)	AluY|SINE|Alu	2167	NM_001145541	55346	Hs.655341	NM_018393	ENSG00000176148	TCP11L1	dJ85M6.3	t-complex 11 like 1	protein-coding	2.354	3.087	nan	3.266	2.200	1.244	2.502	1.469	0.334	1.334	0.606	2.691	6.495	2.033	0.188	5.461	6.318	4.693	5.263	5.768	5.469	4.633	1.817	6.018	6.335	3.936	4.726	3.399	4.821	3.591	4.058	2.678	4.511	3.831	4.291	2.307	nan	2.033	1.180	2.315	3.013	0.778	1.271	2.502	2.691	1.800	1.544	1.629	0.935
5068	chr21	19271953	19276149	+	0	NA	Intergenic	Intergenic	-15606	NM_001204177	140578	Hs.283725	NM_024944	ENSG00000154645	CHODL	C21orf68|MT75|PRED12	chondrolectin	protein-coding	0.947	1.831	nan	0.287	0.288	0.248	0.927	0.018		0.127	0.037	0.142	17.789	0.077	0.106	0.244	0.179	0.737	2.128	0.585	0.567	1.036	0.359	0.647	0.624	0.862	1.215	0.143	0.223	0.637	0.341	0.058	0.140	5.915	6.582	0.736	1.365	1.234	0.805	0.260	0.230	0.952	0.075	0.927	0.142		0.024	0.023	0.383
4954	chr20	41811086	41819743	+	0	NA	intron (NM_007050, intron 1 of 30)	intron (NM_007050, intron 1 of 30)	3143	NM_007050	11122	Hs.526879	NM_007050	ENSG00000196090	PTPRT	RPTPrho	protein tyrosine phosphatase, receptor type T	protein-coding	nan	nan	0.389	0.072	0.140	0.037	0.149	0.129	0.018	0.036	0.065	0.096	4.292	0.057	0.104	4.513	4.337	1.272	0.665	0.598	0.635	nan	0.070	0.096	0.130	0.094	0.247	1.207	0.992	nan	0.334	4.817	9.804	0.015	0.006	0.207	0.474	0.547	0.468	0.084	0.048	0.011	0.037	0.149	0.096		0.047	5.282	0.071
2645	chr14	63740158	63754872	+	0	NA	intron (NM_020663, intron 2 of 4)	intron (NM_020663, intron 2 of 4)	38078	NM_145171	122876	Hs.375028	NM_145171	ENSG00000179600	GPHB5	B5|GPB5|ZLUT1	glycoprotein hormone beta 5	protein-coding	nan	nan	1.121	0.917	0.520	0.298	0.609	0.112	0.120	0.512	0.292	1.302	0.895	0.533	0.140	0.270	0.128	0.318	0.553	1.885	2.370	3.856	0.610	nan	0.361	0.479	0.679	2.385	nan	0.926	0.430	0.114	0.232	1.415	1.538	0.209	0.465	3.624	1.547	0.555	0.424	0.292	0.384	0.609	1.302	0.106	0.083	0.041	0.223
1519	chr11	73086653	73104911	+	0	NA	intron (NM_032871, intron 1 of 10)	intron (NM_032871, intron 1 of 10)	8069	NM_032871	84957	Hs.533720	NM_032871	ENSG00000054967	RELT	TNFRSF19L|TRLT	RELT tumor necrosis factor receptor	protein-coding	nan	1.129	1.656	0.265	1.023	0.473	0.650	0.425	0.035	0.293	0.178	0.584	1.823	0.689	0.094	2.605	4.614	1.500	2.054	1.718	1.784	1.205	0.462	3.937	4.052	1.591	2.239	1.733	2.712	0.888	0.940	1.686	2.569	0.726	0.738	0.697	1.073	0.760	0.638	1.478	0.642	0.146	0.388	0.650	0.584	0.243	0.501	0.769	0.183
3173	chr16	73465552	73469916	+	0	NA	Intergenic	Intergenic	47030	NR_038234	100506172	Hs.434230	NR_038234	ENSG00000258779	LINC01568	-	long intergenic non-protein coding RNA 1568	ncRNA	0.682	0.764	nan	0.846	1.112	0.547	0.291		0.073	0.358	0.075	0.225	1.655	0.002	0.038	5.656	8.848	11.232	7.697	0.764	0.963	0.045	0.029	4.863	5.339	0.364	0.660	0.170	0.334	0.569	0.651	2.572	5.015	0.240	0.186	0.101	0.180	1.752	1.008	0.371	0.174	0.109	0.091	0.291	0.225	0.088		3.838	0.093
2197	chr12	124872734	124914598	+	0	NA	intron (NM_001077261, intron 15 of 47)	intron (NM_001077261, intron 15 of 47)	-71878	NR_106940	102466204		NR_106940	ENSG00000275967	MIR6880	hsa-mir-6880	microRNA 6880	ncRNA	1.456	0.963	1.087	0.445	0.913	0.464	1.135	0.739	0.185	0.793	0.570	0.709	1.487	0.190	0.094	1.077	1.712	0.631	1.351	0.657	0.713	nan	0.233	0.920	0.998	0.979	1.598	1.308	2.424	1.827	2.017	0.742	0.887	0.907	1.092	1.455	3.114	0.886	0.524	2.836	1.177	0.320	0.259	1.135	0.709	1.020	0.810	0.374	0.721
1236	chr10	123327468	123369181	+	0	NA	intron (NM_001144914, intron 1 of 14)	AluJr4|SINE|Alu	5157	NM_001144913	2263	Hs.533683	NM_000141	ENSG00000066468	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding	nan	0.653	1.374	0.057	0.308	0.151	0.181	0.282	0.142	0.053	0.038	0.040	0.534	0.062	0.074	0.662	0.830	3.621	4.874	0.207	0.215	0.779	0.322	0.309	0.286	0.797	1.078	0.927	1.108	0.474	0.511	0.251	0.478	0.101	0.072	0.409	1.042	0.115	0.208	0.075	0.170	0.020	0.131	0.181	0.040	0.138	0.029	0.230	0.366
2413	chr13	102653904	102667152	+	0	NA	intron (NM_001321945, intron 2 of 5)	intron (NM_001321945, intron 2 of 5)	37826	NR_039854	100616239		NR_039854	ENSG00000264482	MIR4705	-	microRNA 4705	ncRNA	0.994	1.006	0.833	0.113	0.423	0.146	0.473	0.099	0.109	0.119	0.121	0.404	7.878	0.017	0.060	0.646	0.373	0.378	0.273	0.439	0.463	0.607	0.221	0.094	0.148	0.376	nan	0.217	0.229	0.532	0.359	0.171	0.201	0.168	0.125	0.724	nan	0.177	0.176	0.636	0.193	0.043	0.086	0.473	0.404	0.073	0.046	0.037	0.177
4400	chr2	70473141	70477054	+	0	NA	intron (NM_022037, intron 1 of 11)	intron (NM_022037, intron 1 of 11)	682	NM_022037	7072	Hs.413123	NM_022037	ENSG00000116001	TIA1	TIA-1|WDM	TIA1 cytotoxic granule associated RNA binding protein	protein-coding	nan	nan	6.284	7.121	9.399	5.069	4.621	3.062	0.330	2.425	1.953	7.577	15.584	7.029	0.193	9.487	8.651	11.231	13.763	14.824	14.226	13.469	6.998	21.680	24.293	6.168	6.417	11.943	18.744	12.400	11.200	7.775	12.240	6.076	6.963	12.075	10.237	nan	2.265	5.768	7.583	1.287	3.065	4.621	7.577	2.448	2.959	2.903	3.774
5493	chr3	116552686	116593086	+	0	NA	Intergenic	Intergenic	-3672	NR_039649	100616485		NR_039649	ENSG00000265433	MIR4447	-	microRNA 4447	ncRNA	0.807	nan	0.595	0.126	0.358	0.200	0.180	0.089	0.108	0.100	0.099	0.050	0.251	1.830	0.056	0.375	0.187	0.332	0.324	0.358	nan	0.304	0.217	0.192	0.189	nan	1.013	0.262	0.240	0.852	0.483	0.097	0.162	0.035	0.061	0.360	1.039	0.643	0.558	0.041	0.090	0.011	0.051	0.180	0.050	0.014	0.106	0.015	0.197
7037	chr6	148310980	148316624	+	0	NA	Intergenic	Intergenic	-279610	NM_001346505	23328	Hs.193133	NM_015278	ENSG00000111961	SASH1	SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding	nan	0.787	nan	0.061	0.160	0.141	0.317	0.120	0.058	0.083	0.053	0.042	0.179		0.086	1.383	0.966	7.716	4.663	0.241	0.345	0.685	0.335	0.247	0.255	0.081	0.203	0.141	0.188	0.575	0.266	1.065	2.028	0.126	0.081	0.377	1.118	0.286	0.307	0.020	0.032		0.028	0.317	0.042		0.054	1.099	0.776
5015	chr20	56142335	56153279	+	0	NA	Intergenic	Intergenic	11670	NM_002591	5105	Hs.1872	NM_002591	ENSG00000124253	PCK1	PEPCK-C|PEPCK1|PEPCKC	phosphoenolpyruvate carboxykinase 1	protein-coding	1.672	1.762	0.688	0.088	0.805	0.397	1.391	0.111	0.087	0.208	0.165	0.098	0.259	0.108	0.092	1.012	nan	0.581	1.300	0.199	0.286	9.097	2.588	0.257	0.190	0.189	0.299	0.116	0.148	0.382	0.124	1.209	1.563	0.209	0.354	0.228	0.277	0.833	0.643	0.048	0.098	0.044	0.051	1.391	0.098	0.035	0.065	2.389	0.080
1815	chr12	8393578	8397144	+	0	NA	TTS (NR_120454)	TTS (NR_120454)	181	NR_024254	653113	Hs.661749	NR_024254		FAM86FP	-	family with sequence similarity 86, member A pseudogene	pseudo	2.214	nan	nan	0.849	0.933	0.594	1.098	0.364		0.463	0.299	1.342	8.146	2.419	0.067	0.656	1.015	2.661	3.375	nan	2.277	1.855	0.315	4.033	4.221	1.103	1.401	1.335	1.976	1.899	2.390	0.668	1.253	0.366	0.382	2.600	nan	0.964	0.545	0.977	2.042	0.114	0.178	1.098	1.342	4.462	0.929	0.525	0.620
3662	chr18	10005193	10036581	+	0	NA	Intergenic	Intergenic	106932	NM_003574	9218	Hs.165195	NM_003574	ENSG00000101558	VAPA	VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding	1.141	1.097	1.223	0.234	0.639	0.307	0.107	0.574	0.180	0.190	0.166	1.634	nan	0.045	0.112	0.440	0.372	0.418	0.747	0.575	0.597	nan	1.609	0.229	0.247	0.411	nan	0.561	0.806	nan	1.025	0.167	0.249	1.615	1.031	0.613	nan	nan	0.900	0.041	0.170	0.437	0.156	0.107	1.634	0.120	0.097	0.028	1.121
1005	chr10	5353799	5359224	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-50461	NM_053049	114131	Hs.511775	NM_053049	ENSG00000178473	UCN3	SCP|SPC|UCNIII	urocortin 3	protein-coding	0.507	1.368	0.829	1.787	0.870	0.396	0.211	0.159	0.088	1.087	0.500	0.528	0.912	0.020	0.067	0.348	0.196	0.146	0.167	0.272	0.440	14.443	5.263	0.128	0.084	0.083	0.253	1.726	1.602	0.162	0.091	0.298	0.647	3.907	3.842	0.045	0.110	2.499	1.324	0.061	1.426	1.527	0.030	0.211	0.528	0.216	0.374	0.236	
4280	chr2	28972794	28978854	+	0	NA	intron (NM_206876, intron 2 of 8)	intron (NM_206876, intron 2 of 8)	1198	NM_002709	5500	Hs.702907	NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD	protein phosphatase 1 catalytic subunit beta	protein-coding	5.731	4.004	4.817	6.368	4.814	2.726	5.249	3.067	0.292	4.800	1.792	5.799	15.451	4.318	0.125	4.817	5.129	6.100	9.049	9.202	9.262	9.309	6.236	12.997	13.419	3.922	4.531	8.031	nan	6.417	7.050	3.954	6.989	4.383	5.002	8.420	8.353	3.765	2.108	5.064	5.686	0.958	3.523	5.249	5.799	2.196	3.587	2.169	3.349
4130	chr19	49464150	49470132	+	0	NA	Intergenic	Intergenic	-1425	NM_000146	2512	Hs.433670	NM_000146	ENSG00000087086	FTL	LFTD|NBIA3	ferritin light chain	protein-coding	3.635	1.825	2.318	3.549	4.284	1.694	2.281	1.736	0.187	0.649	0.580	2.259	3.767	3.475	0.093	3.674	4.237	1.809	3.466	5.020	4.390	6.152	1.881	16.504	17.805	2.396	3.119	5.077	7.830	4.645	6.161	2.014	2.451	3.230	4.876	2.908	5.191	3.854	2.164	2.791	3.631	0.524	1.572	2.281	2.259	1.724	5.406	1.280	2.053
2089	chr12	95976121	95989936	+	0	NA	Intergenic	Intergenic	-37762	NM_032147	84101	Hs.646421	NM_032147	ENSG00000136014	USP44	-	ubiquitin specific peptidase 44	protein-coding	0.736	0.758	0.884	0.140	0.307	0.127	0.152	0.264	0.220	0.512	0.389	0.562	nan	0.054	0.142	0.313	0.194	0.285	0.829	0.543	0.585	0.769	0.180	0.279	0.281	0.690	nan	0.489	nan	0.388	0.171	0.172	0.282	0.182	0.213	0.341	0.671	3.351	1.594	0.032	0.085	0.028	0.057	0.152	0.562	0.028	0.632	0.044	0.099
4575	chr2	164556728	164600216	+	0	NA	intron (NM_001321825, intron 1 of 1)	intron (NM_001321825, intron 1 of 1)	14045	NM_018086	55137	Hs.593650	NM_018086	ENSG00000182263	FIGN	-	fidgetin, microtubule severing factor	protein-coding	1.956	0.974	nan	0.801	1.298	0.695	0.494	0.404	0.096	1.526	1.151	0.096	1.542	1.321	0.116	0.563	0.377	1.157	1.372	0.978	0.794	0.115	0.072	0.481	0.464	1.718	2.130	0.652	0.899	2.537	2.593	0.222	0.405	4.616	5.172	2.290	3.453	1.088	0.595	0.175	0.290	1.188	0.011	0.494	0.096	0.013	0.392	0.045	0.801
215	chr1	37315726	37328411	+	0	NA	intron (NM_000831, intron 7 of 15)	intron (NM_000831, intron 7 of 15)	177776	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	glutamate ionotropic receptor kainate type subunit 3	protein-coding	1.294	nan	1.597	0.241	3.082	1.794	0.545	0.071	0.051	0.199	0.215	5.895	1.659	0.103	0.113	0.309	0.224	0.084	0.128	4.063	3.665	nan	0.790	0.154	0.152	1.213	1.728	40.900	33.117	nan	0.704	0.866	1.156	0.475	0.565	1.252	3.804	1.452	nan	1.039	0.927	0.253	0.051	0.545	5.895	0.359	0.176	0.288	0.941
4410	chr2	77070729	77098141	+	0	NA	intron (NM_001282924, intron 3 of 3)	(TA)n|Simple_repeat|Simple_repeat	-128656	NR_110284	101927907	Hs.382185	NR_110284	ENSG00000234653	LOC101927907	-	uncharacterized LOC101927907	ncRNA	nan	nan	0.560	0.109	0.172	0.099	0.302	0.057	0.047	0.109	0.182	0.052	0.587	0.008	0.089	0.290	0.174	0.213	0.290	0.380	0.503	0.335	0.155	0.464	0.517	0.236	0.271	0.308	0.336	0.463	0.165	0.142	0.208	0.276	0.212	0.410	0.604	nan	0.525	3.130	0.058	0.077	0.035	0.302	0.052	0.014	0.019	0.054	0.076
687	chr1	179922683	179927122	+	0	NA	intron (NM_014810, intron 1 of 37)	intron (NM_014810, intron 1 of 37)	994	NM_014810	9857	Hs.413045	NM_014810	ENSG00000135837	CEP350	CAP350|GM133	centrosomal protein 350	protein-coding	nan	nan	nan	3.321	2.465	1.739	2.721	4.220	0.286	2.075	1.126	3.757	7.391	2.915	0.105	6.440	6.909	7.961	11.494	nan	8.066	5.573	2.023	13.011	14.269	5.057	6.140	4.495	6.745	4.839	4.990	9.169	15.812	3.968	4.150	5.890	6.299	2.734	1.541	1.649	5.734	0.411	2.406	2.721	3.757	0.678	1.845	4.495	1.446
5824	chr4	3423505	3432396	+	0	NA	intron (NM_198227, intron 12 of 15)	G-rich|Low_complexity|Low_complexity	-15710	NM_001297439	3083	Hs.104	NM_001528	ENSG00000109758	HGFAC	HGFA	HGF activator	protein-coding	0.680	0.514	nan	0.468	0.563	0.216	0.341	0.110	0.072	0.173	0.165	1.440	0.236	0.072	0.085	0.481	0.756	0.286	0.600	0.902	0.929	nan	0.408	0.406	0.531	0.195	0.317	1.362	1.756	0.265	0.227	0.653	1.006	0.102	0.104	0.232	0.195	nan	0.581	1.875	6.099		0.368	0.341	1.440	0.048	0.068	0.234	0.081
5509	chr3	122784278	122845921	+	0	NA	intron (NM_006810, intron 3 of 16)	AluJb|SINE|Alu	29243	NR_028444	10954	Hs.477352	NM_006810	ENSG00000065485	PDIA5	PDIR	protein disulfide isomerase family A member 5	protein-coding	1.596	nan	1.514	0.409	0.778	0.465	0.732	0.736	0.165	0.456	0.349	0.215	0.957	0.111	0.070	0.604	0.725	0.422	0.659	1.541	1.372	2.443	0.841	0.572	0.633	1.209	nan	0.488	0.631	5.048	4.826	0.364	0.530	0.325	0.380	2.198	6.122	0.659	0.592	0.610	0.317	0.061	0.107	0.732	0.215	0.447	0.296	0.102	2.657
5692	chr3	176851367	176876524	+	0	NA	intron (NM_001321194, intron 1 of 16)	ERVL-B4-int|LTR|ERVL	50327	NM_001321193	79718	Hs.714201	NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	transducin beta like 1 X-linked receptor 1	protein-coding	1.312	1.219	0.952	0.435	0.958	0.427	0.157	0.458	0.217	0.335	0.295	0.208	1.015	0.304	0.129	0.436	0.381	1.509	4.042	0.508	0.596	0.870	0.321	0.383	0.394	0.465	0.751	0.944	1.341	0.704	0.668	0.246	0.531	0.168	0.243	0.589	1.179	0.230	0.199	0.293	0.318	0.049	0.372	0.157	0.208	0.078	0.085	0.288	0.328
2336	chr13	71347979	71366983	+	0	NA	Intergenic	Intergenic	-231792	NR_047699	100885781	Hs.372660	NR_047699	ENSG00000226846	LINC00348	-	long intergenic non-protein coding RNA 348	ncRNA	nan	1.187	1.054	0.227	0.226	0.186	0.417	0.079	0.025	0.050	0.095	0.138	0.333	0.040	0.087	0.547	0.353	0.282	0.254	1.101	1.207	nan	2.269	0.122	0.154	2.985	3.280	0.156	0.221	nan	0.890	0.188	0.296	0.633	0.594	1.057	nan	0.195	0.219	0.093	0.075	0.200	0.260	0.417	0.138	0.118	0.026	0.088	0.848
5872	chr4	40700666	40710369	+	0	NA	Intergenic	Intergenic	-46397	NM_024677	79730	Hs.479602	NM_024677	ENSG00000179299	NSUN7	-	NOP2/Sun RNA methyltransferase family member 7	protein-coding	0.746	nan	nan	0.108	0.227	0.131	0.105	0.112	0.150	0.143	0.171	0.238	0.294	0.056	0.054	0.427	0.330	10.455	5.740	0.196	0.292	0.492	0.242	3.698	3.515	0.165	0.190	0.367	0.338	0.460	0.202	0.849	2.301	0.079	0.070	0.263	1.371	0.773	0.620	0.017	0.090		0.090	0.105	0.238	0.020	0.011	2.052	0.407
4424	chr2	87775559	87788329	+	0	NA	intron (NR_024204, intron 3 of 3)	(CA)n|Simple_repeat|Simple_repeat	26970	NR_024206	112597	Hs.652166	NM_052871	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA	nan	1.348	nan	0.297	0.885	0.452	1.131	0.943	0.238	0.283	0.170	0.778	0.896	0.541	0.105	1.549	1.825	4.342	7.615	0.855	0.876	0.332	0.203	5.218	5.208	0.215	0.402	0.590	0.855	0.400	0.252	1.420	1.903	0.967	0.798	0.247	0.467	0.304	0.286	0.815	0.083	0.290	0.119	1.131	0.778	0.114	0.500	1.055	0.309
2190	chr12	123531897	123637210	+	0	NA	intron (NM_020845, intron 1 of 24)	intron (NM_020845, intron 1 of 24)	10422	NM_020845	57605	Hs.272759	NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding	1.447	1.500	1.649	0.986	1.892	0.956	0.522	0.196	0.096	0.294	0.214	2.069	3.292	0.144	0.114	1.400	2.241	0.416	0.646	2.264	2.286	nan	0.975	0.839	0.907	1.896	2.480	4.520	4.465	1.041	1.023	1.149	1.935	1.152	1.258	0.816	2.167	2.380	1.374	3.208	2.203	0.441	1.314	0.522	2.069	0.536	1.685	1.507	0.470
826	chr1	206717915	206761654	+	0	NA	intron (NM_182665, intron 1 of 4)	L3b|LINE|CR1	9292	NM_182665	83593	Hs.497579	NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding	1.279	1.627	4.266	0.303	0.916	0.484	0.637	0.214	0.092	1.495	0.639	1.542	1.230	0.061	0.091	1.375	2.069	0.728	0.968	1.441	1.567	1.468	0.493	nan	nan	0.596	0.902	2.211	3.060	0.572	0.466	0.464	0.618	0.762	0.512	0.498	0.771	2.526	1.450	0.419	3.622	0.157	0.532	0.637	1.542	0.199	0.709	0.470	0.220
3990	chr19	17565114	17583034	+	0	NA	Intergenic	AluSx|SINE|Alu	-2349	NM_138454	115861	Hs.661836	NM_138454	ENSG00000171773	NXNL1	RDCVF|TXNL6	nucleoredoxin-like 1	protein-coding	1.418	0.926	1.346	0.221	0.484	0.170	0.361	0.351	0.135	0.141	0.129	0.180	1.309	0.478	0.072	0.728	0.728	0.544	0.813	0.785	0.731	1.147	0.363	0.547	0.435	0.600	1.064	0.795	1.193	2.159	2.420	0.178	0.240	0.215	0.174	2.346	6.787	0.732	0.542	0.193	0.477	0.064	0.058	0.361	0.180	0.273	0.365	0.077	1.239
5467	chr3	112876331	112897329	+	0	NA	promoter-TSS (NR_110823)	promoter-TSS (NR_110823)	-252	NR_110823	101929717	Hs.638426	NR_110823	ENSG00000243795	LINC02044	-	long intergenic non-protein coding RNA 2044	ncRNA	1.923	nan	1.147	0.299	0.633	0.282	1.745	2.135	0.246	0.322	0.353	1.752	1.694	0.057	0.067	0.747	1.194	3.262	4.158	1.206	nan	0.337	0.147	0.306	0.344	nan	4.971	0.578	0.708	0.816	0.405	0.181	0.319	0.923	0.692	0.444	0.789	1.010	0.623	0.417	0.120	0.363	0.103	1.745	1.752	0.411	0.126	0.090	0.254
7344	chr7	80388678	80414368	+	0	NA	intron (NM_006379, intron 12 of 17)	intron (NM_006379, intron 12 of 17)	125554	NM_001289908	948	Hs.120949	NM_000072	ENSG00000135218	CD36	BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3	CD36 molecule	protein-coding	1.133	0.857	1.000	0.127	0.258	0.137	0.927	0.808	0.177	0.242	0.223	0.077	0.417	0.321	0.173	0.437	0.313	0.368	0.514	0.317	0.428	0.155	0.083	0.211	0.224	0.550	0.804	0.496	0.577	0.530	0.337	0.310	0.701	3.630	3.878	0.662	nan	0.667	0.603	0.306	0.197	1.148	0.040	0.927	0.077	0.051	0.190	0.334	0.221
5265	chr22	38849679	38865687	+	0	NA	Intergenic	CpG	-6384	NM_016657	11015	Hs.745072	NM_006855	ENSG00000100196	KDELR3	ERD2L3	KDEL endoplasmic reticulum protein retention receptor 3	protein-coding	1.397	nan	0.802	0.226	0.682	0.305	1.293	0.226	0.060	0.127	0.129	0.699	1.635	1.174	0.110	2.245	4.060	0.563	0.950	0.892	0.879	1.155	0.409	0.366	0.414	1.051	nan	0.509	0.835	nan	2.266	0.733	1.387	0.759	0.782	0.360	0.584	0.392	0.330	0.306	0.567	0.101	0.556	1.293	0.699	0.610	0.673	0.852	0.116
7030	chr6	147827727	147833441	+	0	NA	intron (NM_001030060, intron 1 of 1)	intron (NM_001030060, intron 1 of 1)	756	NM_001030060	389432	Hs.567973	NM_001030060	ENSG00000203727	SAMD5	dJ875H10.1	sterile alpha motif domain containing 5	protein-coding	nan	0.824	nan	0.154	0.227	0.181	0.702	3.163	0.274	0.218	0.117	0.063	0.597	0.245	0.070	0.725	0.473	11.250	13.691	0.972	0.845	10.078	3.172	1.554	1.148	0.344	0.501	0.368	0.467	4.339	4.050	1.161	3.968	0.247	0.228	0.269	0.732	0.341	0.471	0.399	0.108	0.017	0.054	0.702	0.063	0.117	0.054	0.600	0.586
6418	chr5	121016829	121033281	+	0	NA	Intergenic	Intergenic	-162595	NM_177478	94033	Hs.105324	NM_177478	ENSG00000181867	FTMT	MTF	ferritin mitochondrial	protein-coding	nan	0.732	0.521	0.112	0.147	0.157	0.031	0.125	0.079	0.114	0.104	0.051	0.159	0.035	0.117	1.702	1.599	12.426	nan	0.173	0.154	0.080	0.050	2.271	2.342	0.197	0.256	0.175	0.154	0.392	0.143	0.467	1.210	0.117	0.170	0.225	0.530	0.129	0.167	0.007	0.043	0.017	0.005	0.031	0.051	0.018	0.025	0.415	0.076
2980	chr15	89631615	89641752	+	0	NA	intron (NM_007011, intron 2 of 14)	AluSx|SINE|Alu	5302	NM_152924	11057	Hs.122337	NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2	protein-coding	1.653	nan	1.554	1.955	1.847	0.714	1.767	2.483	0.095	3.152	1.970	3.236	2.044	0.358	0.074	1.721	2.361	1.442	1.776	2.325	2.455	2.605	1.286	0.655	0.567	1.765	2.345	2.913	4.362	1.201	0.971	2.147	3.277	1.672	2.529	0.562	0.998	2.234	0.889	0.558	0.738	0.552	0.266	1.767	3.236	0.229	1.566	1.681	0.170
2653	chr14	65400713	65411315	+	0	NA	non-coding (NR_046320, exon 3 of 3)	non-coding (NR_046320, exon 3 of 3)	3609	NR_046321	2877	Hs.2704	NM_002083	ENSG00000176153	GPX2	GI-GPx|GPRP|GPRP-2|GPx-2|GPx-GI|GSHPX-GI|GSHPx-2	glutathione peroxidase 2	protein-coding	nan	nan	0.973	4.698	1.886	0.908	0.616	0.458	0.281	1.449	0.789	2.179	1.707	0.101	0.159	0.385	0.440	0.452	0.833	1.683	1.678	4.080	1.048	nan	8.987	0.404	0.694	4.489	nan	0.747	0.535	0.458	0.718	2.455	4.287	0.421	0.923	4.556	2.165	2.670	1.575	0.493	0.568	0.616	2.179	0.850	1.699	0.214	0.288
5883	chr4	44719694	44729910	+	0	NA	intron (NM_138335, intron 1 of 6)	MER2|DNA|TcMar-Tigger	3849	NM_001270880	132789	Hs.21398	NM_138335	ENSG00000163281	GNPDA2	GNP2|SB52	glucosamine-6-phosphate deaminase 2	protein-coding	1.353	nan	nan	0.936	1.244	0.556	0.662	0.632	0.094	1.419	0.744	0.445	1.162	0.329	0.086	1.314	1.793	1.788	2.404	1.168	1.160	1.862	0.640	1.424	1.216	1.964	2.733	1.015	1.773	1.764	1.725	0.650	1.213	4.694	4.469	1.163	1.920	6.359	2.585	0.145	0.252	0.856	0.578	0.662	0.445	0.144	0.407	0.358	0.397
5056	chr21	10449818	10456867	+	0	NA	Intergenic	Intergenic	-484748	NR_038328	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo	1.016	1.061	nan	0.125	0.328	0.136	0.233	0.140	0.161	0.044	0.232	0.034	0.250	0.079	0.214	0.529	0.387	9.298	4.998	0.357	0.412	0.170	0.059	0.394	0.249	0.287	0.436	0.074	0.110	0.694	0.201	0.325	0.660	0.115	0.135	0.321	0.688	0.289	0.425	0.016	0.077	0.040	0.116	0.233	0.034		0.028	0.113	0.085
2548	chr14	35177228	35184767	+	0	NA	non-coding (NR_028131, exon 4 of 4)	non-coding (NR_028131, exon 4 of 4)	2026	NM_021914	1073	Hs.180141	NM_021914	ENSG00000165410	CFL2	NEM7	cofilin 2	protein-coding	4.553	1.791	2.089	2.403	1.494	0.627	2.010	4.814	0.431	0.752	0.538	2.570	4.699	1.848	0.197	1.953	2.193	2.242	4.551	3.855	3.473	1.653	0.799	4.541	4.462	5.473	6.234	2.001	3.610	5.783	5.162	1.822	4.338	2.286	2.478	1.326	1.587	1.745	0.834	1.174	2.654	0.636	3.172	2.010	2.570	1.115	1.377	4.134	0.558
5356	chr3	35710312	35725453	+	0	NA	intron (NM_016300, intron 1 of 19)	intron (NM_016300, intron 1 of 19)	-3231	NM_001267618	10777	Hs.475902	NM_016300	ENSG00000172995	ARPP21	ARPP-21|R3HDM3|RCS|TARPP	cAMP regulated phosphoprotein 21	protein-coding	0.894	0.931	0.627	0.087	0.073	0.053	0.110	0.128	0.106	0.063	0.125	0.016	0.253	0.036	0.110	0.441	0.351	0.342	0.181	0.284	0.362	0.059	0.071	0.158	0.127	2.701	nan	0.241	0.236	2.977	2.109	0.178	0.214	0.025	0.040	0.315	0.886	0.347	0.304	0.048	0.076	0.012	0.084	0.110	0.016	0.096	0.174	0.045	0.171
6890	chr6	107190653	107206986	+	0	NA	intron (NR_033557, intron 1 of 6)	intron (NR_033557, intron 1 of 6)	-33181	NR_030314	693172		NR_030314	ENSG00000207577	MIR587	MIRN587|hsa-mir-587	microRNA 587	ncRNA	1.373	nan	nan	4.124	6.573	3.722	0.847	0.105	0.059	0.941	0.366	3.874	2.711	0.027	0.103	7.619	5.073	0.511	1.550	1.324	nan	6.913	2.471	0.301	0.335	0.296	0.540	6.612	5.293	nan	0.904	0.405	0.792	3.077	2.654	0.148	0.239	2.045	1.077	0.232	2.593	0.338	0.330	0.847	3.874	0.254	4.252	0.560	0.076
5088	chr21	30627099	30636022	+	0	NA	intron (NR_027072, intron 1 of 1)	intron (NR_027072, intron 1 of 1)	-39556	NM_001186	571	Hs.154276	NM_001186	ENSG00000156273	BACH1	BACH-1|BTBD24	BTB domain and CNC homolog 1	protein-coding	0.996	0.821	4.273	1.079	0.569	0.271	0.073	0.243	0.036	0.473	0.287	0.272	0.687	0.072	0.101	0.346	0.379	0.222	0.460	2.104	2.144	0.186	0.101	0.199	0.294	1.276	2.032	0.324	0.261	1.180	0.544	0.143	0.258	1.605	2.312	0.514	1.326	nan	2.449	0.037	0.090	0.525	0.026	0.073	0.272	0.120	0.092	0.055	0.207
2625	chr14	59203943	59229866	+	0	NA	Intergenic	Intergenic	-78102	NR_110547	102723742	Hs.232734	NR_110547	ENSG00000258583	LINC01500	-	long intergenic non-protein coding RNA 1500	ncRNA	nan	nan	1.641	0.492	0.257	0.148	0.642	0.833	0.201	0.133	0.150	0.227	0.332	0.059	0.089	0.330	0.257	0.390	0.691	0.747	0.764	1.078	0.373	nan	0.629	0.721	0.972	1.276	nan	1.017	0.688	0.162	0.293	2.123	2.289	0.484	1.647	0.977	0.741	1.874	0.315	0.886	1.652	0.642	0.227	0.169	0.353	0.073	1.058
4090	chr19	44097764	44102434	+	0	NA	promoter-TSS (NM_024327)	promoter-TSS (NM_024327)	188	NM_001007561	126298	Hs.6217	NM_001007561	ENSG00000167378	IRGQ	FKSG27|IRGQ1	immunity related GTPase Q	protein-coding	6.258	3.364	4.149	2.841	4.070	1.752	3.568	2.247	0.246	1.712	1.174	4.020	5.288	3.202	0.171	3.163	3.817	6.651	10.224	6.741	6.910	7.554	5.806	15.648	18.518	4.190	5.606	6.432	9.794	4.170	4.567	4.159	6.703	4.969	5.289	6.595	5.854	4.871	2.828	2.109	3.632	0.471	0.782	3.568	4.020	1.083	2.004	1.780	1.709
3400	chr17	39666590	39705819	+	0	NA	Intergenic	Intergenic	-1563	NM_002276	3880	Hs.654568	NM_002276	ENSG00000171345	KRT19	CK19|K19|K1CS	keratin 19	protein-coding	nan	2.889	2.684	0.543	1.684	0.861	0.211	0.105	0.100	1.377	0.652	1.221	5.503	0.052	0.058	0.433	0.521	1.089	2.473	nan	1.187	4.087	0.788	0.961	1.035	0.442	0.800	1.114	1.529	nan	0.333	0.578	0.698	1.923	2.063	0.157	0.192	1.533	0.863	2.105	0.698	0.622	0.833	0.211	1.221	0.555	0.105	0.184	0.044
7878	chr8	110545091	110564611	+	0	NA	intron (NM_001278938, intron 1 of 6)	intron (NM_001278938, intron 1 of 6)	1996	NM_001278938	9166	Hs.409368	NM_004215	ENSG00000147654	EBAG9	EB9|PDAF	estrogen receptor binding site associated, antigen, 9	protein-coding	nan	nan	2.460	1.378	1.518	0.814	0.737	0.551	0.116	0.423	0.290	1.863	3.295	0.467	0.067	1.027	1.188	0.748	0.913	2.977	2.559	nan	1.153	4.126	nan	5.108	nan	3.548	4.458	2.894	2.715	0.654	0.953	3.660	3.716	1.744	2.190	1.586	0.880	1.530	1.085	1.138	0.702	0.737	1.863	0.188	1.181	0.313	0.747
5143	chr21	43754130	43758892	+	0	NA	Intergenic	MER101|LTR|ERV1	14697	NM_005423	7032	Hs.2979	NM_005423	ENSG00000160181	TFF2	SML1|SP	trefoil factor 2	protein-coding	nan	1.325	1.778	1.222	0.496	0.271	0.303	0.048	0.056	0.265	0.336	0.869	2.202	0.046	0.042	5.275	6.927	9.291	6.498	1.242	1.793	nan	0.652	9.328	9.257	0.178	nan	2.965	4.106	0.996	1.116	4.956	5.469	0.658	0.898	0.259	0.484	1.637	1.067	0.545	0.670	0.091	0.186	0.303	0.869	0.293	0.832	3.981	0.099
730	chr1	186342831	186346237	+	0	NA	promoter-TSS (NM_001164245)	promoter-TSS (NM_001164245)	-77	NM_003292	7175	Hs.279640	NM_003292	ENSG00000047410	TPR	-	translocated promoter region, nuclear basket protein	protein-coding	nan	5.344	4.623	5.743	4.413	2.282	3.788	4.636	0.285	3.651	1.489	3.786	12.282	4.694	0.200	8.066	8.428	13.571	18.889	12.387	10.867	8.642	4.446	21.793	22.684	7.956	8.105	8.372	10.347	7.114	8.517	7.670	15.265	6.493	6.779	7.523	8.526	3.657	1.570	2.312	6.756	0.918	2.145	3.788	3.786	1.280	1.645	5.042	2.178
16	chr1	1352360	1377275	+	0	NA	TTS (NR_125996)	TTS (NR_125996)	3309	NM_001146685	643965	Hs.729765	NM_001146685	ENSG00000205116	TMEM88B	-	transmembrane protein 88B	protein-coding	4.936	nan	7.829	3.969	0.473	0.281	0.519	0.227	0.064	0.732	0.384	0.851	1.585	1.122	0.094	1.978	3.326	0.715	1.237	1.375	1.324	1.714	0.607	1.901	1.957	1.119	nan	nan	17.229	nan	4.245	1.901	2.658	0.868	0.601	2.399	5.086	1.353	0.720	2.340	0.582	0.157	0.236	0.519	0.851	2.653	2.674	1.189	1.977
921	chr1	232667876	232705255	+	0	NA	Intergenic	Intergenic	-35211	NM_020808	57568	Hs.745009	NM_020808	ENSG00000116991	SIPA1L2	SPAL2	signal induced proliferation associated 1 like 2	protein-coding	1.416	1.704	2.793	0.958	0.813	0.403	0.922	0.845	0.159	1.057	0.392	0.760	0.618	0.049	0.089	0.475	0.328	1.203	2.251	0.661	0.859	nan	1.164	0.231	0.282	1.767	2.427	nan	2.227	0.974	0.989	0.314	0.669	1.330	2.058	0.443	0.781	nan	0.964	0.433	0.330	0.451	0.325	0.922	0.760	0.491	0.220	0.816	0.218
5233	chr22	29187491	29198817	+	0	NA	exon (NM_005080, exon 3 of 5)	exon (NM_005080, exon 3 of 5)	3406	NM_001079539	7494	Hs.437638	NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding	nan	1.945	2.369	1.949	4.638	2.483	1.396	2.508	0.257	1.521	0.798	2.099	3.624	2.048	0.109	1.621	2.115	2.069	nan	1.819	1.430	4.419	2.590	10.402	10.545	3.003	nan	5.526	7.266	1.896	2.592	2.287	3.292	5.377	6.847	4.203	nan	4.043	1.931	1.459	1.792	0.792	1.195	1.396	2.099	0.506	2.860	0.810	0.993
2880	chr15	54265547	54282385	+	0	NA	intron (NM_001329919, intron 1 of 31)	intron (NM_001329919, intron 1 of 31)	3589	NM_001329919	440279	Hs.657273	NM_001080534	ENSG00000137766	UNC13C	-	unc-13 homolog C	protein-coding	0.514	0.622	0.905	0.120	0.204	0.124	0.068	0.080	0.068	0.084	0.089	0.142	3.344	0.039	0.077	0.263	0.118	0.422	0.776	0.256	0.298	0.082	0.061	0.222	0.150	4.819	4.900	0.347	0.416	0.753	0.449	0.127	0.190	0.330	0.575	0.167	0.164	0.452	0.465	0.248	0.125	0.039	0.024	0.068	0.142		0.061	0.065	0.030
7998	chr8	145012264	145032883	+	0	NA	intron (NM_000445, intron 2 of 32)	intron (NM_000445, intron 2 of 32)	2471	NM_201380	5339	Hs.434248	NM_000445	ENSG00000178209	PLEC	EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN	plectin	protein-coding	3.581	1.602	nan	2.287	1.468	0.723	2.656	1.750	0.460	0.314	0.152	1.598	4.980	1.019	0.058	1.917	3.378	1.288	2.290	nan	2.984	nan	0.868	2.555	2.788	0.750	1.380	2.630	4.245	0.988	1.120	1.282	1.867	1.022	0.921	1.539	2.121	1.025	0.630	1.739	1.452	0.227	0.566	2.656	1.598	0.524	1.521	0.977	0.382
994	chr10	3310328	3342227	+	0	NA	Intergenic	Intergenic	-34610	NR_131187	105376360	Hs.212226	NR_131187		LOC105376360	-	uncharacterized LOC105376360	ncRNA	0.323	1.119	0.699	0.738	0.436	0.156	0.395	0.185	0.172	1.110	0.438	0.716	0.895	0.085	0.083	0.567	0.529	0.292	0.587	0.528	0.480	7.434	4.132	0.199	0.179	0.127	0.198	0.828	0.996	0.144	0.092	0.174	0.257	1.141	1.303	0.177	0.207	1.049	0.609	0.012	0.150	0.205	0.015	0.395	0.716	0.052	0.089	0.093	0.074
5360	chr3	42065306	42094862	+	0	NA	Intergenic	AluSx1|SINE|Alu	-52662	NM_001042646	22906	Hs.535711	NM_014965	ENSG00000182606	TRAK1	MILT1|OIP106	trafficking kinesin protein 1	protein-coding	1.648	nan	nan	0.335	0.299	0.120	0.899	1.542	0.195	0.229	0.245	0.270	0.718	0.158	0.075	0.445	0.645	0.475	0.866	0.640	0.636	1.728	0.742	0.279	0.308	1.561	2.015	1.327	1.840	2.410	1.988	0.231	0.285	0.849	0.903	1.612	4.249	0.900	0.592	0.202	0.141	0.234	0.433	0.899	0.270	0.275	0.460	0.101	0.967
6847	chr6	73636998	73664841	+	0	NA	intron (NM_001160133, intron 1 of 14)	intron (NM_001160133, intron 1 of 14)	26557	NR_036244	100423005		NR_036244	ENSG00000266180	MIR4282	-	microRNA 4282	ncRNA	nan	nan	0.827	0.202	0.247	0.121	0.208	0.453	0.171	0.113	0.118	0.167	0.461	0.120	0.143	0.477	0.354	0.377	0.425	0.312	0.371	0.119	0.108	0.325	0.342	0.556	0.778	0.556	0.597	0.563	0.242	0.117	0.262	0.251	0.273	1.344	4.529	0.319	0.357	0.022	0.032	0.117	0.031	0.208	0.167	0.014	0.073	0.049	1.313
2788	chr14	104756432	104767231	+	0	NA	Intergenic	Intergenic	156771	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding	1.175	1.146	0.730	0.424	0.169	0.179	0.124	0.080	0.059	0.276	0.200	0.764	3.230	0.030	0.088	1.094	1.922	0.252	0.265	0.873	1.035	1.198	0.270	0.072	0.104	1.509	1.898	1.968	2.471	0.988	0.676	0.986	0.866	0.404	0.427	1.202	3.169	3.345	1.520	0.549	0.321	0.036	0.074	0.124	0.764	0.098	3.240	0.220	0.920
2140	chr12	110300177	110319201	+	0	NA	intron (NM_016433, intron 1 of 4)	intron (NM_016433, intron 1 of 4)	8604	NM_016433	51228	Hs.381256	NM_016433	ENSG00000139433	GLTP	-	glycolipid transfer protein	protein-coding	nan	nan	0.867	0.347	0.770	0.387	0.467	0.540	0.220	0.404	0.219	0.611	5.480	0.418	0.090	0.515	0.607	0.743	1.668	nan	nan	nan	0.413	0.908	1.085	1.442	1.836	nan	nan	0.634	0.613	0.510	0.833	0.309	0.404	0.533	0.900	nan	0.846	2.240	0.554	0.059	1.382	0.467	0.611	0.331	0.342	0.140	0.195
1523	chr11	73689147	73722676	+	0	NA	Intergenic	Intergenic	-12022	NM_003355	7351	Hs.80658	NM_003355	ENSG00000175567	UCP2	BMIQ4|SLC25A8|UCPH	uncoupling protein 2	protein-coding	nan	1.594	1.564	1.913	1.522	0.724	0.772	0.446	0.106	1.201	0.528	1.737	3.848	0.388	0.126	1.986	2.617	0.861	1.262	2.995	2.856	3.225	1.278	3.853	4.186	1.874	2.274	5.559	7.543	1.277	1.077	1.021	1.695	1.898	1.920	0.860	1.449	1.491	0.879	3.107	3.341	0.664	0.835	0.772	1.737	0.405	1.026	0.971	0.549
5613	chr3	154872698	154880272	+	0	NA	intron (NM_007287, intron 16 of 22)	intron (NM_007287, intron 16 of 22)	78406	NM_007289	4311	Hs.307734	NM_000902	ENSG00000196549	MME	CALLA|CD10|CMT2T|NEP|SCA43|SFE	membrane metalloendopeptidase	protein-coding	nan	0.999	0.519	0.152	0.306	0.148	0.152	0.168	0.084	0.227	0.199	0.094	0.097	0.014	0.086	1.336	1.112	8.616	5.495	0.195	0.372	0.218	0.063	0.388	0.302	0.233	nan	0.160	0.232	0.656	0.263	0.438	0.959	0.028	0.080	0.226	0.230	0.268	0.306		0.060	0.025	0.127	0.152	0.094	0.013	0.053	0.234	0.033
6405	chr5	111146588	111152262	+	0	NA	intron (NM_001142474, intron 2 of 3)	intron (NM_001142474, intron 2 of 3)	-55510	NM_001142476	9315	Hs.36053	NM_004772	ENSG00000134986	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.884	0.973	0.543	0.079	0.251	0.113	0.023	0.238	0.199	0.027	0.100		0.184	0.038	0.126	0.851	0.558	8.828	5.434	0.123	0.298	0.148	0.074	1.494	1.531	0.566	nan	0.205	0.263	0.495	0.178	0.358	0.547	0.090	0.081	0.514	0.955	0.437	0.357	0.026	0.062	0.034	0.126	0.023		0.051		0.279	0.153
4667	chr2	201979201	201996443	+	0	NA	intron (NM_001127183, intron 1 of 9)	intron (NM_001127183, intron 1 of 9)	4553	NM_001127183	8837	Hs.390736	NM_003879	ENSG00000003402	CFLAR	CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS	CASP8 and FADD like apoptosis regulator	protein-coding	3.389	nan	4.087	1.669	1.583	0.873	1.014	2.131	0.298	0.652	0.413	1.729	4.746	2.216	0.120	1.559	2.146	5.723	12.878	1.854	1.714	1.810	0.593	5.202	5.493	2.368	3.160	2.544	3.421	0.483	0.221	1.952	2.797	1.350	1.279	0.479	1.025	1.112	0.744	2.093	0.981	0.254	1.516	1.014	1.729	0.131	0.771	0.905	0.266
3578	chr17	76063633	76069769	+	0	NA	intron (NM_018996, intron 6 of 20)	intron (NM_018996, intron 6 of 20)	41179	NR_040071	100131096	Hs.635442	NR_040071	ENSG00000204282	TNRC6C-AS1	-	TNRC6C antisense RNA 1	ncRNA	1.057	1.002	0.904	0.117	0.506	0.262	0.334	0.186	0.116	0.050	0.137	0.150	0.483	0.077	0.158	0.523	0.733	0.275	0.490	0.491	0.661	0.475	0.244	0.369	0.340	nan	1.014	0.400	0.452	1.071	0.553	0.517	0.754	0.039	0.148	0.401	1.091	nan	0.399	0.045	0.127	0.031	0.142	0.334	0.150	0.031	5.353	0.129	0.200
7763	chr8	79427039	79430744	+	0	NA	intron (NM_181839, intron 1 of 2)	intron (NM_181839, intron 1 of 2)	555	NM_006823	5569	Hs.433700	NM_006823	ENSG00000171033	PKIA	PRKACN1	cAMP-dependent protein kinase inhibitor alpha	protein-coding	7.236	2.310	3.030	4.623	4.743	2.639	3.582	1.165	0.172	1.263	0.709	5.360	10.973	1.280	0.054	4.931	5.902	5.874	6.556	16.679	14.841	9.744	5.687	6.404	7.729	5.691	6.805	4.024	6.616	8.108	9.720	2.597	4.540	6.099	5.811	8.256	7.640	6.190	3.526	4.116	3.141	1.134	1.518	3.582	5.360	0.816	3.452	0.456	2.011
6546	chr5	169673271	169701717	+	0	NA	intron (NM_005565, intron 14 of 20)	MIRb|SINE|MIR	27483	NM_001305393	133874	Hs.519749	NM_001102609	ENSG00000234511	C5orf58	-	chromosome 5 open reading frame 58	protein-coding	nan	0.771	0.479	0.031	0.141	0.113	0.210	0.108	0.059	0.049	0.101	0.046	0.585	0.049	0.124	1.282	1.143	13.523	7.015	0.337	0.422	0.098	0.055	0.547	0.574	0.094	0.210	0.300	0.491	0.304	0.174	0.894	1.229	0.250	0.293	0.106	0.130	0.555	0.424	0.011	0.062	0.057	0.070	0.210	0.046	0.047	0.029	0.712	0.039
8130	chr9	37666518	37680151	+	0	NA	intron (NM_014907, intron 1 of 15)	THE1A-int|LTR|ERVL-MaLR	22282	NM_014907	22844	Hs.163990	NM_014907	ENSG00000070601	FRMPD1	FRMD2	FERM and PDZ domain containing 1	protein-coding	1.100	nan	1.145	0.426	0.508	0.224	0.311	0.089	0.082	0.289	0.200	1.513	1.601	0.040	0.101	0.232	0.244	0.196	0.242	1.549	1.570	1.395	0.346	0.200	0.191	0.326	0.719	1.034	0.925	2.376	1.880	0.196	0.275	0.400	0.459	1.717	4.939	4.533	2.202	0.376	0.358	0.062	0.052	0.311	1.513	0.049	0.290	0.044	2.222
3040	chr16	4663253	4676705	+	0	NA	Intergenic	Intergenic	-4846	NM_015246	23295	Hs.526494	NM_015246	ENSG00000102858	MGRN1	RNF156	mahogunin ring finger 1	protein-coding	4.037	nan	3.553	5.591	3.083	1.676	2.302	1.306	0.239	2.122	0.959	3.584	5.838	1.404	0.122	2.370	3.109	1.751	2.549	3.171	3.486	nan	4.688	8.201	8.780	2.362	nan	5.818	7.193	4.288	4.427	1.735	2.778	3.997	4.231	3.316	5.120	3.525	1.699	2.901	1.852	0.935	1.303	2.302	3.584	1.238	2.858	0.729	1.712
374	chr1	77978541	77982597	+	0	NA	intron (NM_174858, intron 10 of 13)	intron (NM_174858, intron 10 of 13)	167774	NM_015534	26009	Hs.480506	NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding	nan	0.797	0.973	0.135	0.123	0.116	0.160	4.480	0.240	0.130	0.082	0.172	0.392	0.855	0.141	0.501	0.449	11.569	11.758	0.362	nan	0.357	0.221	0.417	0.337	0.644	nan	0.521	0.558	0.366	0.253	0.354	0.625	0.032	0.062	0.409	0.813	0.805	0.459		0.022	0.024	0.038	0.160	0.172			0.075	0.164
429	chr1	106595480	106607291	+	0	NA	Intergenic	Intergenic	-439828	NR_125955	101928476	Hs.563856	NR_125954	ENSG00000230768	LINC01676	-	long intergenic non-protein coding RNA 1676	ncRNA	0.644	nan	nan	0.228	0.239	0.149	0.319	0.095	0.083	0.079	0.097	0.120	0.344	0.037	0.086	0.236	0.204	0.187	0.244	0.324	nan	1.025	0.321	0.282	0.332	8.557	9.305	nan	nan	0.380	0.136	0.140	0.283	1.363	2.293	0.247	nan	0.475	0.294	0.028	0.030	0.209	0.778	0.319	0.120	0.082	0.077	0.025	0.032
1306	chr11	11982561	12003873	+	0	NA	intron (NM_001018057, intron 3 of 6)	CR1_Mam|LINE|CR1	36969	NM_001018057	27122	Hs.292156	NM_013253	ENSG00000050165	DKK3	REIC|RIG	dickkopf WNT signaling pathway inhibitor 3	protein-coding	1.338	nan	4.777	0.149	0.256	0.157	0.355	1.402	0.120	0.183	0.125	0.229	0.432	0.047	0.060	nan	1.285	0.323	0.480	0.565	0.681	0.666	0.277	0.572	0.643	1.279	nan	0.242	0.272	1.074	1.331	0.368	0.443	0.929	1.352	0.241	0.357	1.064	nan	0.123	0.158	0.300	0.172	0.355	0.229	0.189	0.024	0.061	0.041
1091	chr10	32034775	32050534	+	0	NA	Intergenic	Intergenic	155200	NM_001270699	94134	Hs.499264	NM_018287	ENSG00000165322	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding	2.002	1.733	2.374	0.473	1.515	0.937	1.104	1.161	0.317	1.544	0.596	1.207	5.434	0.370	0.079	0.722	1.344	0.703	nan	2.886	2.521	3.293	1.069	1.921	1.857	3.327	4.494	0.853	1.609	1.627	1.801	0.459	0.662	2.280	1.988	1.065	1.379	2.502	1.182	2.851	0.681	0.708	1.243	1.104	1.207	0.857	2.142	0.359	0.500
4594	chr2	172815578	172826877	+	0	NA	intron (NR_027862, intron 3 of 9)	intron (NR_027862, intron 3 of 9)	42292	NR_027862	8520	Hs.632532	NM_003642	ENSG00000128708	HAT1	KAT1	histone acetyltransferase 1	protein-coding	0.964	0.925	0.809	1.295	5.548	2.424	1.256	0.212	0.128	0.774	0.412	0.575	0.304	0.096	0.085	0.336	0.233	0.268	0.329	0.396	0.429	2.302	0.917	0.318	0.374	0.560	0.845	1.104	0.890	0.476	0.239	0.175	0.271	0.970	1.100	0.395	0.809	2.625	1.063	0.094	0.111	0.108	0.021	1.256	0.575	0.017	0.018	0.066	0.144
1962	chr12	54663827	54678528	+	0	NA	intron (NM_012117, intron 1 of 4)	AluSx1|SINE|Alu	2738	NM_012117	23468	Hs.349283	NM_012117	ENSG00000094916	CBX5	HEL25|HP1|HP1A	chromobox 5	protein-coding	nan	2.269	2.879	3.274	3.662	1.913	2.185	1.843	0.153	2.155	1.311	3.030	6.197	2.086	0.118	nan	5.515	4.923	6.696	6.361	nan	6.923	5.693	10.364	11.231	3.038	nan	5.427	nan	7.044	6.322	4.355	5.842	4.704	5.579	6.787	6.526	3.921	1.830	1.404	3.131	0.868	1.214	2.185	3.030	0.874	1.281	1.926	1.877
489	chr1	144704914	144710730	+	0	NA	intron (NM_001037501, intron 7 of 20)	intron (NM_001037501, intron 7 of 20)	92863	NR_102405	728841	Hs.445080	NM_001037501	ENSG00000270231	NBPF8	NBPF8P	neuroblastoma breakpoint family member 8	protein-coding	2.704	nan	1.875	1.528	2.188	1.128	5.808	0.867	0.304	1.536	1.482	0.737	13.729	0.186	0.230	0.460	0.452	1.108	1.264	1.467	1.738	7.665	1.555	1.345	1.058	6.838	6.949	3.862	5.328	0.841	0.465	2.348	7.318	7.175	7.438	1.155	2.499	4.446	2.123	0.294	2.548	3.863	0.145	5.808	0.737	0.083	2.603	14.177	0.427
1392	chr11	43559610	43580852	+	0	NA	Intergenic	Intergenic	-10975	NR_031577	100313777		NR_031577	ENSG00000211568	MIR670	hsa-mir-670	microRNA 670	ncRNA	nan	1.045	0.634	0.075	0.271	0.161	0.080	0.114	0.076	0.199	0.195	0.112	0.514	0.123	0.104	0.357	0.207	0.241	0.295	0.386	0.410	4.004	2.145	0.256	0.302	0.815	1.040	0.180	0.227	0.258	0.090	0.205	0.311	0.222	0.293	0.307	nan	0.780	0.669	0.042	0.084	0.027	0.083	0.080	0.112	0.041	0.518	0.050	0.261
1080	chr10	26222314	26233666	+	0	NA	intron (NM_017433, intron 2 of 34)	intron (NM_017433, intron 2 of 34)	4988	NM_017433	53904	Hs.662630	NM_017433	ENSG00000095777	MYO3A	DFNB30	myosin IIIA	protein-coding	0.644	1.783	2.380	1.187	6.264	3.107	0.079	0.166	0.109	2.042	1.176	0.072	0.154	0.038	0.065	0.583	0.714	0.160	0.283	1.195	1.227	4.848	2.631	0.938	0.884	2.465	2.737	0.136	0.149	0.681	0.522	0.469	0.551	6.741	8.003	0.208	0.373	2.600	1.223	1.413	0.187	1.971	0.175	0.079	0.072	0.035	0.009	0.079	0.066
4724	chr2	219856700	219869457	+	0	NA	Intergenic	L2b|LINE|L2	3352	NR_029867	494324		NR_029867	ENSG00000198973	MIR375	MIRN375|hsa-mir-375|miRNA375|mir-375	microRNA 375	ncRNA	nan	2.648	nan	6.060	7.467	3.644	1.346	0.065	0.064	3.870	1.903	12.303	7.874	0.545	0.061	4.812	9.428	0.301	0.514	11.665	11.008	4.360	1.559	0.349	0.302	0.886	1.205	14.757	nan	3.961	4.135	2.304	4.864	1.937	1.270	1.461	6.595	2.463	1.161	5.708	4.406	0.575	0.675	1.346	12.303	1.795	4.995	4.506	1.286
2819	chr15	26189701	26194478	+	0	NA	intron (NR_040082, intron 1 of 4)	intron (NR_040082, intron 1 of 4)	44582	NR_040082	100128714	Hs.587854	NR_040082	ENSG00000206187	LOC100128714	-	uncharacterized LOC100128714	ncRNA	nan	1.157	nan	0.056	0.220	0.134	1.134	0.031	0.033	0.920	0.570	0.634	0.255	0.068	0.019	0.331	0.154	9.022	4.536	1.828	1.767	0.100	0.036	0.127	0.125	0.036	0.181	1.343	2.246	nan	0.416	0.266	0.710	0.128	0.180	0.098	0.208	2.116	1.134	0.192	0.073	0.020	0.017	1.134	0.634	0.020	0.085	0.165	
2233	chr13	22235421	22253615	+	0	NA	promoter-TSS (NM_002010)	promoter-TSS (NM_002010)	-697	NM_002010	2254	Hs.111	NM_002010	ENSG00000102678	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding	0.990	1.652	2.867	2.852	2.676	1.543	0.660	0.142	0.088	1.658	0.822	3.941	8.618	2.904	0.095	1.962	2.419	0.994	nan	6.537	4.534	0.359	0.117	1.054	0.988	1.231	1.783	2.741	3.980	1.203	0.725	0.992	2.604	2.379	1.813	0.200	0.224	4.391	2.415	5.150	3.855	0.592	2.792	0.660	3.941	0.080	2.183	1.090	0.021
622	chr1	162656609	162668792	+	0	NA	intron (NM_006182, intron 2 of 17)	L1ME3A|LINE|L1	60472	NM_001014796	4921	Hs.275757	NM_006182	ENSG00000162733	DDR2	MIG20a|NTRKR3|TKT|TYRO10	discoidin domain receptor tyrosine kinase 2	protein-coding	2.127	nan	2.631	0.497	0.629	0.435	0.766	1.799	0.187	0.521	0.501	1.278	1.077	0.063	0.105	0.399	0.592	0.484	0.797	1.492	nan	0.591	0.267	0.245	0.281	4.027	4.637	1.803	nan	1.389	1.145	0.395	0.913	0.764	0.715	1.632	5.382	1.106	0.771	0.366	1.423	0.188	0.678	0.766	1.278	0.669	0.778	0.342	1.529
5389	chr3	62722275	62751298	+	0	NA	intron (NM_183394, intron 3 of 27)	intron (NM_183394, intron 3 of 27)	124278	NM_003716	8618	Hs.654933	NM_003716	ENSG00000163618	CADPS	CADPS1|CAPS|CAPS1|UNC-31	calcium dependent secretion activator	protein-coding	1.077	nan	0.870	0.086	0.186	0.089	0.107	0.044	0.039	0.130	0.073	0.158	0.376	0.022	0.072	0.233	0.179	0.126	0.173	0.277	0.330	0.357	0.135	0.069	0.088	0.399	0.751	0.227	0.285	1.061	1.003	0.108	0.180	0.140	0.194	1.269	nan	0.592	0.392	0.046	0.148	0.043	0.071	0.107	0.158	0.124	0.031	0.123	2.239
6653	chr6	20919909	20941103	+	0	NA	intron (NM_017774, intron 9 of 15)	intron (NM_017774, intron 9 of 15)	395818	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding	1.231	1.221	nan	0.771	2.655	1.360	0.682	0.296	0.103	0.347	0.332	1.086	nan	0.087	0.121	0.468	0.277	1.515	nan	0.411	0.661	nan	0.499	0.450	0.474	0.991	1.072	1.059	0.866	0.764	0.463	0.172	0.331	1.433	2.439	0.516	1.391	0.793	0.459	1.560	0.340	0.474	0.214	0.682	1.086	0.064	0.053	0.084	0.348
6200	chr5	19168148	19181779	+	0	NA	Intergenic	Intergenic	711418	NM_001291957	1016	Hs.317632	NM_004934	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18	protein-coding	nan	nan	nan	0.385	0.176	0.090	0.122	0.224	0.224	0.177	0.225	0.114	nan	0.034	0.099	0.349	0.257	0.481	0.421	0.513	0.654	0.159	0.132	0.162	0.133	7.051	6.217	0.600	0.592	3.652	2.645	0.156	0.277	1.154	1.466	0.866	nan	0.757	0.756	0.025	0.065	0.296	0.029	0.122	0.114	0.362	0.425	0.051	0.558
970	chr1	245328495	245353685	+	0	NA	intron (NM_018012, intron 2 of 14)	intron (NM_018012, intron 2 of 14)	22803	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding	nan	1.757	nan	1.154	0.537	0.382	1.577	0.134	0.109	0.151	0.216	0.304	0.394	0.082	0.110	0.452	0.300	0.625	0.671	0.552	0.628	7.098	2.429	0.630	0.647	0.202	0.262	2.777	2.557	0.351	0.186	0.161	0.328	0.681	1.001	0.352	0.762	0.311	0.422	0.029	0.142	0.109	0.076	1.577	0.304	0.050	1.511	0.142	0.123
2256	chr13	30167195	30170691	+	0	NA	intron (NM_003045, intron 1 of 12)	CpG	882	NM_003045	6541	Hs.14846	NM_003045	ENSG00000139514	SLC7A1	ATRC1|CAT-1|ERR|HCAT1|REC1L	solute carrier family 7 member 1	protein-coding	6.122	4.239	8.322	8.693	2.718	1.120	3.140	4.867	0.230	2.593	1.600	6.112	6.042	5.360	0.115	8.827	8.805	3.978	7.543	11.505	8.947	7.401	3.568	11.086	11.251	2.774	3.642	5.471	9.542	16.141	20.952	7.821	14.985	6.994	5.721	10.528	10.243	3.111	1.799	4.818	5.933	1.350	2.876	3.140	6.112	1.026	3.451	3.007	3.213
5718	chr3	180965106	180973959	+	0	NA	intron (NR_075093, intron 2 of 4)	intron (NR_075093, intron 2 of 4)	20007	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA	0.969	1.086	0.770	0.162	0.487	0.310	1.480	0.117	0.163	0.425	0.432	0.353	1.014	0.049	0.088	0.242	0.182	0.162	0.216	0.541	0.624	15.090	5.343	0.137	0.087	0.204	0.298	0.560	0.538	0.659	0.433	0.108	0.150	0.354	0.530	0.230	0.246	1.869	1.074	0.019	0.070	0.086	0.160	1.480	0.353		0.138	0.056	0.057
5768	chr3	189653677	189670169	+	0	NA	Intergenic	MIRb|SINE|MIR	114212	NR_030642	100126340		NR_030642	ENSG00000216058	MIR944	MIRN944|hsa-mir-944|mir-944	microRNA 944	ncRNA	1.415	1.435	1.472	0.122	1.803	0.932	0.326	0.470	0.136	0.228	0.178	0.275	0.778	0.020	0.080	0.354	0.172	0.805	2.699	0.301	0.397	7.332	2.225	0.526	0.560	0.158	0.338	1.088	1.289	0.873	0.418	0.144	0.257	3.867	5.785	0.366	0.700	1.018	0.818	0.034	0.075	1.400	0.788	0.326	0.275	0.048	0.043	0.047	0.119
2057	chr12	84897146	84907288	+	0	NA	Intergenic	MER50-int|LTR|ERV1	404391	NM_018057	55117	Hs.44424	NM_018057	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	solute carrier family 6 member 15	protein-coding	1.553	0.716	0.631	0.652	2.334	1.077	0.101	1.650	0.285	0.155	0.115	0.130	1.023	0.060	0.104	0.220	0.217	0.339	0.409	0.793	0.795	1.265	0.453	0.286	0.157	5.267	5.825	1.598	1.152	0.423	0.184	0.109	0.235	4.762	3.997	0.360	0.473	1.148	0.908	0.029	0.130	1.027	0.079	0.101	0.130	0.152	0.306	0.116	0.048
8314	chr9	136371835	136403096	+	0	NA	intron (NM_001080483, intron 1 of 4)	intron (NM_001080483, intron 1 of 4)	2603	NM_001080483	389827	Hs.512467	NM_001080483	ENSG00000187616	TMEM8C	MYOMAKER|TMEM226	transmembrane protein 8C	protein-coding	nan	1.359	4.271	1.801	0.441	0.252	1.039	0.104	0.088	1.153	0.611	2.054	2.085	0.049	0.056	0.241	0.554	0.153	0.232	3.226	3.579	nan	0.225	0.135	0.164	0.096	0.185	2.662	2.909	1.477	1.456	0.337	0.327	1.664	0.941	0.354	0.492	1.795	0.961	2.867	0.420	0.585	0.035	1.039	2.054	0.247	0.857	0.054	0.061
2361	chr13	86235353	86251313	+	0	NA	Intergenic	L2a|LINE|L2	130150	NM_032229	84189	Hs.525105	NM_032229	ENSG00000184564	SLITRK6	DFNMYP	SLIT and NTRK like family member 6	protein-coding	nan	nan	0.589	0.239	0.273	0.176	0.448	0.141	0.060	0.490	0.713	0.068	0.278	0.027	0.076	0.513	0.386	0.276	0.278	0.335	0.388	8.001	3.424	0.158	0.159	0.109	0.108	2.082	1.536	0.423	0.165	0.208	0.361	0.757	0.500	0.362	0.813	0.127	0.126	0.014	0.040	0.083	0.693	0.448	0.068	0.037	0.152	0.068	0.046
5089	chr21	31088730	31099565	+	0	NA	intron (NM_001330994, intron 1 of 17)	intron (NM_001330994, intron 1 of 17)	-26347	NR_027021	642976	Hs.473554	NR_027021		GRIK1-AS1	C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110	GRIK1 antisense RNA 1	ncRNA	0.872	0.679	0.925	0.331	1.318	0.532	0.131	0.083	0.029	0.361	0.099	0.276	0.569	0.005	0.097	0.444	0.219	0.225	0.260	0.141	0.240	0.183	0.070	0.241	0.234	0.208	0.357	0.172	0.202	0.534	0.160	0.141	0.202	0.221	0.127	0.356	0.937	nan	1.753	0.015	0.050	0.027	0.044	0.131	0.276	0.018	5.021	0.009	0.091
7348	chr7	81143940	81158048	+	0	NA	intron (NR_136264, intron 4 of 4)	intron (NR_136264, intron 4 of 4)	40141	NR_136264	105369146	Hs.730390	NR_136264		LOC105369146	-	uncharacterized LOC105369146	ncRNA	0.790	0.625	0.657	0.118	0.157	0.176	0.073	0.300	0.140	0.088	0.144	0.068	0.194	0.223	0.189	0.389	0.243	0.168	0.240	0.326	0.378	0.141	0.094	0.117	0.105	5.047	4.658	0.206	0.242	0.369	0.216	0.192	0.209	0.080	0.108	0.298	nan	0.539	0.539	0.035	0.088	0.021	0.051	0.073	0.068	0.021	0.036	0.028	0.098
2563	chr14	37209691	37245248	+	0	NA	intron (NM_030631, intron 3 of 9)	intron (NM_030631, intron 3 of 9)	100696	NM_006194	5083	Hs.132576	NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding	1.294	0.953	1.261	1.171	1.408	0.676	0.510	0.153	0.126	0.236	0.195	0.945	4.158	0.054	0.121	0.233	0.162	0.230	0.346	1.482	1.466	1.337	0.340	0.293	0.314	0.676	1.017	2.627	2.225	0.651	0.294	0.251	0.373	1.638	2.386	0.167	0.271	0.772	0.543	9.692	2.195	0.558	0.180	0.510	0.945	0.120	0.605	0.190	0.191
3086	chr16	21509932	21542958	+	0	NA	Intergenic	AluSp|SINE|Alu	5320	NR_002594	387254	Hs.448808	NR_002594		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo	2.970	1.846	nan	2.291	2.070	1.147	2.077	1.052	0.336	1.003	0.639	2.129	4.706	2.669	0.189	1.585	1.925	1.952	3.314	3.652	3.665	nan	1.114	3.888	3.929	1.056	1.588	5.557	7.451	3.171	3.186	1.073	2.022	2.431	2.498	2.378	3.244	2.816	1.409	2.117	0.919	1.015	1.312	2.077	2.129	1.049	1.092	0.880	1.333
4749	chr2	232461604	232491150	+	0	NA	Intergenic	Intergenic	18802	NM_152614	165100	Hs.98104	NM_152614	ENSG00000177673	TEX44	C2orf57	testis expressed 44	protein-coding	2.051	nan	3.035	2.330	2.542	1.482	2.327	0.379	0.121	0.466	0.225	3.047	2.525	1.354	0.154	3.396	3.797	2.065	3.913	4.013	3.531	3.417	2.055	3.117	3.309	0.440	0.801	6.802	nan	1.634	1.584	2.081	3.341	1.066	0.911	1.967	2.545	1.114	0.691	3.894	0.856	0.100	1.181	2.327	3.047	0.539	1.741	1.693	0.653
7208	chr7	25978692	25994814	+	0	NA	Intergenic	Intergenic	2853	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA	2.892	1.368	4.477	2.257	0.712	0.321	3.297	0.195	0.136	0.532	0.244	0.616	1.932	0.161	0.133	1.487	1.323	0.927	nan	2.401	1.959	7.398	2.553	0.932	0.957	1.013	1.485	4.422	4.610	0.736	0.751	1.091	1.517	0.870	0.818	0.632	nan	0.966	0.615	0.805	1.135	0.106	1.446	3.297	0.616	0.229	1.109	0.661	0.354
6861	chr6	83072444	83080447	+	0	NA	3' UTR (NM_006670, exon 3 of 3)	3' UTR (NM_006670, exon 3 of 3)	2484	NM_001166392	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding	0.766	1.481	nan	1.576	1.131	0.526	0.873	3.751	0.420	0.568	0.273	0.912	13.903	0.991	0.147	2.482	2.756	2.989	4.754	1.225	1.064	4.342	1.410	1.087	1.327	0.118	0.185	3.067	4.010	0.619	0.475	0.913	2.012	3.421	1.919	0.401	0.676	0.754	0.487	0.508	0.332	0.716	0.429	0.873	0.912		1.091	0.298	1.094
4333	chr2	50158841	50202123	+	0	NA	intron (NM_001135659, intron 22 of 23)	intron (NM_001135659, intron 22 of 23)	20859	NM_001320156	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding	1.086	nan	1.112	0.282	0.130	0.059	0.716	0.081	0.081	0.275	0.231	0.420	0.493	0.040	0.104	0.322	0.220	0.372	0.486	0.673	0.684	1.548	0.522	0.409	0.424	1.335	1.641	0.469	0.461	0.983	0.746	0.169	0.275	0.256	0.305	0.823	1.421	0.697	0.539	3.766	1.131	0.073	0.090	0.716	0.420	0.110	0.117	0.087	0.348
4461	chr2	106928844	106936743	+	0	NA	Intergenic	Intergenic	-65777	NR_003506	285189	Hs.143436	NR_003506	ENSG00000240935	PLGLA	PLGLA1|PLGP2|PRGA	plasminogen-like A (pseudogene)	pseudo	0.947	nan	0.933	0.201	0.301	0.142	0.777	0.019	0.130	0.100	0.082	0.060	0.448	0.020	0.071	0.297	0.190	0.229	0.351	2.769	1.959	0.148	0.089	0.232	0.240	0.164	0.226	0.478	0.483	0.819	0.812	0.131	0.151	2.124	2.532	0.447	0.744	0.181	0.174	0.014	0.100	0.573	4.589	0.777	0.060	0.210	0.038	0.039	0.157
270	chr1	43902045	43908565	+	0	NA	exon (NM_015284, exon 49 of 71)	exon (NM_015284, exon 49 of 71)	-8905	NR_106793	102465440		NR_106793	ENSG00000274975	MIR6735	hsa-mir-6735	microRNA 6735	ncRNA	nan	0.569	nan	1.540	1.776	0.938	0.221	0.127	0.111	1.593	0.399	1.746	0.972	0.131	0.126	0.453	0.555	0.325	0.860	5.932	5.117	0.254	0.101	0.271	0.292	0.379	nan	15.115	11.473	0.453	0.417	0.937	nan	0.052	0.085	0.369	1.256	2.213	1.251	1.207	2.632	0.057	0.212	0.221	1.746	0.136	1.404	0.227	0.378
6870	chr6	90060470	90067886	+	0	NA	Intergenic	Intergenic	-1559	NM_016021	51465	Hs.163776	NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding	nan	2.385	nan	2.954	4.673	2.536	2.455	1.537	0.195	1.839	0.805	7.958	3.960	1.668	0.166	3.701	4.023	2.849	5.002	5.299	5.173	nan	2.302	5.270	5.505	1.646	nan	2.768	4.768	nan	4.709	2.519	3.433	3.580	2.935	1.820	1.969	1.878	1.145	1.431	1.779	0.615	1.668	2.455	7.958	0.641	1.637	0.651	0.686
6791	chr6	46128002	46145564	+	0	NA	intron (NM_021572, intron 1 of 3)	intron (NM_021572, intron 1 of 3)	1964	NM_001290072	59084	Hs.35198	NM_021572	ENSG00000112796	ENPP5	NPP-5|NPP5	ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)	protein-coding	1.109	1.035	0.980	0.672	0.527	0.292	0.288	0.111	0.129	0.271	0.145	0.403	1.454	0.025	0.108	0.799	0.999	3.096	6.551	0.974	0.880	1.124	0.310	0.778	0.827	0.128	0.218	1.207	nan	0.676	0.512	0.711	1.247	0.304	0.322	0.135	0.283	0.930	0.563	0.353	0.445	0.048	0.261	0.288	0.403	0.061	0.057	0.521	0.064
8180	chr9	86321007	86324212	+	0	NA	promoter-TSS (NR_135839)	promoter-TSS (NR_135839)	-141	NR_135839	105376114	Hs.9589	NR_135839	ENSG00000254473	LOC105376114	-	uncharacterized LOC105376114	ncRNA	8.587	5.568	8.918	12.562	8.588	3.940	7.190	4.493	0.256	4.700	1.700	9.343	13.071	4.204	0.114	8.413	7.116	14.038	17.585	15.646	12.820	10.648	7.055	15.794	17.128	3.735	4.375	12.142	19.519	6.300	8.228	5.513	7.414	11.347	13.617	12.252	8.297	5.946	3.372	2.137	4.178	1.876	3.487	7.190	9.343	2.524	2.695	2.203	2.957
6517	chr5	154127118	154139705	+	0	NA	intron (NM_015315, intron 1 of 18)	intron (NM_015315, intron 1 of 18)	40949	NM_015315	23367	Hs.292078	NM_015315	ENSG00000155506	LARP1	LARP	La ribonucleoprotein domain family member 1	protein-coding	2.995	nan	2.390	1.265	2.488	1.274	1.646	1.963	0.214	1.234	0.625	2.614	4.196	2.893	0.139	1.949	1.949	2.579	3.775	2.233	2.213	2.692	1.067	3.979	3.607	2.325	3.011	2.109	2.849	6.563	7.850	2.467	4.620	3.974	3.412	3.497	3.308	1.161	0.650	0.949	2.664	1.091	1.855	1.646	2.614	0.856	1.644	1.445	1.836
2840	chr15	33790952	33799532	+	0	NA	intron (NM_001243996, intron 2 of 102)	intron (NM_001243996, intron 2 of 102)	192079	NM_001036	6263	Hs.709373	NM_001036	ENSG00000198838	RYR3	RYR-3	ryanodine receptor 3	protein-coding	0.841	nan	nan	1.994	0.187	0.075	0.271	0.129	0.150	1.073	0.352	0.008	0.248	0.028	0.098	0.273	0.094	0.188	0.104	0.306	0.361	0.097	0.056	0.049	0.077	0.118	0.262	0.642	0.985	0.519	0.228	0.064	0.131	4.846	5.557	0.167	0.254	4.668	2.742	0.020	0.095	0.733	0.047	0.271	0.008	0.148		0.082	0.014
5037	chr20	61309956	61348734	+	0	NA	Intergenic	Intergenic	-10844	NM_002531	4923	Hs.590869	NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding	0.947	1.295	0.604	0.112	0.765	0.393	0.593	0.079	0.075	0.144	0.081	2.414	0.880	0.067	0.092	1.849	nan	0.132	0.284	1.729	1.650	0.401	0.117	0.348	0.350	0.296	0.560	0.152	0.165	1.405	1.379	1.182	1.808	0.091	0.165	0.250	0.367	0.723	0.669	3.526	0.549	0.017	0.041	0.593	2.414	0.182	0.418	1.481	0.084
1602	chr11	101979565	101986036	+	0	NA	promoter-TSS (NM_001195045)	promoter-TSS (NM_001195045)	-371	NM_001195045	10413	Hs.503692	NM_006106	ENSG00000137693	YAP1	COB1|YAP|YAP2|YAP65|YKI	Yes associated protein 1	protein-coding	0.629	0.770	2.005	0.175	0.160	0.174	0.612	2.343	0.176	0.071	0.142	0.222	5.302	10.869	0.222	0.271	0.133	2.552	6.080	0.709	0.571	0.158	0.092	1.121	1.143	0.152	0.256	0.215	0.263	0.361	0.060	0.275	0.596	0.079	0.069	0.106	0.130	0.180	0.289	0.035	0.061		0.036	0.612	0.222	0.015	0.006	0.092	0.152
4226	chr2	15727636	15751220	+	0	NA	intron (NM_004939, intron 5 of 25)	AluSx|SINE|Alu	7683	NM_004939	1653	Hs.440599	NM_004939	ENSG00000079785	DDX1	DBP-RB|UKVH5d	DEAD-box helicase 1	protein-coding	1.334	1.034	1.415	0.772	0.489	0.333	0.600	0.357	0.163	0.509	0.338	0.549	1.654	0.649	0.130	1.227	1.243	0.917	1.282	1.483	1.459	1.248	0.579	1.046	1.065	0.974	1.235	1.489	nan	1.895	1.822	16.681	20.236	0.423	0.379	1.489	nan	0.902	0.472	0.431	0.839	0.040	0.317	0.600	0.549	0.348	0.715	8.570	0.515
2007	chr12	67661389	67666266	+	0	NA	intron (NM_001329676, intron 1 of 15)	CpG	766	NM_018448	55832	Hs.546407	NM_018448	ENSG00000111530	CAND1	TIP120|TIP120A	cullin associated and neddylation dissociated 1	protein-coding	6.735	4.295	5.040	6.136	9.102	4.599	8.298	3.284	0.132	4.198	2.395	6.300	14.496	3.471	0.119	7.168	7.285	8.984	13.163	20.093	nan	11.063	6.708	17.809	18.742	9.799	11.216	12.761	18.800	13.113	14.032	7.046	10.419	6.522	7.108	9.746	7.021	6.282	2.791	3.285	7.051	1.854	2.838	8.298	6.300	2.304	3.119	2.561	2.250
5139	chr21	43428758	43443118	+	0	NA	intron (NR_119384, intron 1 of 1)	intron (NR_119384, intron 1 of 1)	-5442	NM_001320729	49854	Hs.434947	NM_020727	ENSG00000173276	ZBTB21	ZNF295	zinc finger and BTB domain containing 21	protein-coding	nan	2.501	6.870	2.078	1.749	0.837	1.900	0.918	0.134	1.079	0.561	2.498	10.428	0.680	0.085	2.992	4.408	1.838	3.075	2.999	2.646	nan	1.559	4.224	4.335	1.779	nan	3.555	5.544	2.740	3.565	1.960	3.301	4.140	4.300	2.225	2.371	2.667	1.790	2.860	4.376	1.124	0.858	1.900	2.498	0.964	1.176	1.263	0.825
5341	chr3	21429636	21436819	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-13991	NR_002311	391518	Hs.543226	NR_002311		VENTXP7	HPX42|VENTX1	VENT homeobox pseudogene 7	pseudo	0.555	0.500	0.502	0.258	0.111	0.067	0.036	0.603	0.159	0.066	0.109	0.013	0.115	0.016	0.083	0.181	0.113	4.314	12.082	0.186	0.121	0.071	0.008	0.094	0.073	0.297	0.336	0.376	0.302	nan	0.130	0.034	0.202	0.064	0.022	0.087	0.180	0.051	0.111	0.008	0.087	0.026		0.036	0.013		0.169	0.014	
1399	chr11	45115956	45124852	+	0	NA	intron (NR_046338, intron 2 of 7)	L2c|LINE|L2	4840	NR_046338	56981	Hs.178715	NM_020229	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding	nan	1.190	0.833	0.207	0.791	0.377	0.816	0.118	0.036	0.309	0.207	0.210	0.922	0.075	0.134	0.870	1.450	0.240	0.243	0.768	0.795	1.797	0.432	0.083	0.174	1.495	1.864	0.177	0.211	2.304	1.762	0.447	0.384	0.211	0.279	0.300	nan	1.776	0.936	0.443	0.289	0.054	0.027	0.816	0.210	2.427	0.099	0.078	0.055
7626	chr8	28346921	28354074	+	0	NA	Intergenic	Intergenic	-1225	NM_145866	7976	Hs.40735	NM_017412	ENSG00000104290	FZD3	Fz-3	frizzled class receptor 3	protein-coding	nan	2.528	nan	2.033	5.228	2.444	2.373	0.052	0.120	2.056	1.222	4.846	2.602	2.601	0.088	7.448	9.405	3.013	4.743	10.879	10.263	7.454	2.754	3.027	3.136	1.541	2.081	3.779	5.955	4.441	4.963	2.315	4.571	4.638	3.961	4.756	6.914	nan	nan	3.469	2.490	0.559	1.359	2.373	4.846	0.504	2.754	1.783	2.421
6395	chr5	106206891	106213004	+	0	NA	intron (NR_104671, intron 2 of 3)	HERVL18-int|LTR|ERVL	136768	NR_104671	102467213	Hs.570923	NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA	1.051	1.062	0.682	0.116	3.325	1.547	0.399	0.060	0.106	1.491	0.665	0.471	0.263	0.053	0.115	0.171	0.122	2.734	4.609	0.295	0.284	0.485	0.078	0.227	0.198	0.542	0.703	0.993	0.552	0.429	0.188	0.040	0.108	6.028	7.950	0.181	0.306	1.495	1.108	0.018	0.117	0.718	0.077	0.399	0.471		0.588	0.032	
7540	chr7	151214588	151218354	+	0	NA	intron (NM_005614, intron 1 of 7)	CpG	539	NM_005614	6009	Hs.283521	NM_005614	ENSG00000106615	RHEB	RHEB2	Ras homolog enriched in brain	protein-coding	8.784	4.676	nan	8.483	5.026	2.371	4.291	5.465	0.480	3.720	2.363	12.681	9.260	7.788	0.193	7.241	7.100	9.147	12.830	10.432	7.196	8.663	5.111	17.393	18.003	4.336	5.544	8.362	17.131	5.162	6.316	5.538	10.389	8.432	8.915	8.530	5.782	3.357	2.847	7.274	10.197	1.889	5.246	4.291	12.681	1.522	3.414	2.888	1.080
103	chr1	16531341	16583742	+	0	NA	TTS (NM_030907)	TTS (NM_030907)	6118	NM_030907	79363	Hs.546430	NM_030907	ENSG00000132881	RSG1	C1orf89	REM2 and RAB like small GTPase 1	protein-coding	1.887	1.495	nan	1.581	1.113	0.593	0.919	0.554	0.127	0.638	0.340	0.807	3.528	0.478	0.099	1.844	2.308	1.838	3.089	3.375	3.753	1.640	0.592	1.714	nan	0.776	nan	5.219	6.047	nan	1.072	1.309	1.916	0.355	0.395	0.961	1.642	1.371	0.759	1.183	1.489	0.071	0.626	0.919	0.807	0.364	0.659	0.623	0.338
6859	chr6	80504257	80525930	+	0	NA	intron (NR_131786, intron 4 of 4)	MER103C|DNA|hAT-Charlie	6870	NR_131786	89758	Hs.288213	NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA	1.320	0.926	nan	0.762	1.005	0.407	3.981	0.137	0.185	1.204	0.730	4.539	1.414	0.086	0.132	0.428	0.318	0.248	0.388	3.874	4.713	4.291	1.922	0.295	0.259	0.361	0.559	0.536	0.531	0.889	0.762	0.142	0.242	3.471	3.470	0.592	1.458	1.916	0.982	4.478	5.147	1.249	0.390	3.981	4.539	0.054	0.103	0.046	0.115
8228	chr9	105941914	105947436	+	0	NA	intron (NR_121578, intron 8 of 9)	L1ME4a|LINE|L1	142640	NR_121578	101928496	Hs.410860	NR_121578	ENSG00000225564	LINC01492	-	long intergenic non-protein coding RNA 1492	ncRNA	0.603	0.798	0.952	5.503	0.327	0.145	0.485	0.122	0.056	0.314	0.206	0.432	0.859	0.020	0.068	0.165	0.114	0.139	0.208	0.504	0.414	5.472	0.786	0.318	0.304	0.159	0.266	11.191	17.511	0.545	0.354	0.043	0.074	2.424	4.352	0.360	0.761	nan	1.097	0.051	0.033	0.104		0.485	0.432	0.035	2.434	0.035	0.046
5641	chr3	167809246	167815355	+	0	NA	intron (NM_014498, intron 1 of 15)	intron (NM_014498, intron 1 of 15)	1413	NM_014498	27333	Hs.143600	NM_014498	ENSG00000173905	GOLIM4	GIMPC|GOLPH4|GPP130|P138	golgi integral membrane protein 4	protein-coding	5.065	2.394	2.718	3.628	1.079	0.482	1.559	2.665	0.242	3.244	1.583	1.031	4.296	2.077	0.045	2.565	2.733	3.335	3.599	4.466	3.140	7.552	1.908	4.564	4.040	6.215	7.173	nan	4.663	11.441	12.976	0.516	0.874	7.524	6.633	5.223	5.771	1.907	1.141	0.218	1.021	2.048	2.178	1.559	1.031	1.360	1.549	0.342	2.398
3393	chr17	38218216	38233477	+	0	NA	intron (NM_199334, intron 1 of 8)	intron (NM_199334, intron 1 of 8)	6778	NM_001190918	7067	Hs.724	NM_003250	ENSG00000126351	THRA	AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|c-ERBA-1	thyroid hormone receptor, alpha	protein-coding	nan	3.184	1.372	1.402	3.163	1.598	4.170	2.686	0.366	1.943	1.148	2.849	3.989	1.379	0.089	3.048	5.039	1.116	1.444	nan	3.158	1.462	0.490	1.772	1.845	2.019	2.601	5.240	4.749	nan	2.667	1.383	2.574	1.622	1.334	1.353	2.690	2.023	1.095	4.056	2.309	0.560	0.255	4.170	2.849	1.468	1.401	2.010	1.294
4528	chr2	142869464	142898087	+	0	NA	intron (NM_018557, intron 1 of 90)	intron (NM_018557, intron 1 of 90)	5495	NM_018557	53353	Hs.656461	NM_018557	ENSG00000168702	LRP1B	LRP-1B|LRP-DIT|LRPDIT	LDL receptor related protein 1B	protein-coding	0.816	nan	1.195	0.205	0.267	0.121	0.362	0.088	0.062	0.104	0.137	0.126	0.812	0.080	0.077	0.378	0.211	4.992	5.533	0.535	0.408	0.127	0.045	1.409	1.492	5.656	6.720	0.409	0.484	0.486	0.222	0.146	0.280	0.918	0.550	0.392	0.662	0.109	0.208	0.025	0.034	0.326	0.108	0.362	0.126	0.058	0.219	0.042	0.068
6039	chr4	143468246	143490307	+	0	NA	intron (NM_003866, intron 2 of 26)	intron (NM_003866, intron 2 of 26)	288412	NM_003866	8821	Hs.176376	NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding	0.621	1.231	0.649	0.837	0.612	0.196	0.070	0.123	0.088	0.264	0.063	1.398	1.526	0.167	0.094	0.320	0.311	1.973	5.169	0.570	0.622	0.144	0.037	0.149	0.162	0.768	1.077	1.856	2.201	0.300	0.103	0.115	0.213	0.300	0.350	0.286	0.663	0.731	0.491	0.008	0.105	0.047	0.099	0.070	1.398	0.009	0.101	0.032	0.155
4891	chr20	22537862	22568146	+	0	NA	intron (NR_001558, intron 1 of 3)	intron (NR_001558, intron 1 of 3)	6276	NR_001558	140828	Hs.9842	NR_001558	ENSG00000259974	LINC00261	ALIEN|C20orf56|DEANR1|HCCDR1|NCRNA00261|onco-lncRNA-17	long intergenic non-protein coding RNA 261	ncRNA	0.799	1.138	nan	5.045	7.262	4.102	0.541	0.092	0.084	5.951	2.815	3.383	2.555	0.043	0.060	0.387	0.186	0.080	0.107	2.184	1.943	7.610	3.292	0.090	0.095	0.110	0.204	2.684	3.313	0.298	0.096	0.165	0.233	9.588	7.346	0.188	0.355	4.773	2.597	0.012	0.212	3.349	0.019	0.541	3.383	0.013	1.574	0.042	0.053
5411	chr3	78916459	78939763	+	0	NA	intron (NM_002941, intron 4 of 30)	intron (NM_002941, intron 4 of 30)	140498	NM_001145845	6091	Hs.744218	NM_002941	ENSG00000169855	ROBO1	DUTT1|SAX3	roundabout guidance receptor 1	protein-coding	0.775	0.708	0.799	0.151	2.149	1.182	0.205	0.390	0.054	0.969	0.808	0.292	0.273	0.097	0.078	0.205	0.143	4.168	nan	0.537	0.588	1.569	0.589	0.131	0.114	0.671	0.779	0.372	0.345	7.265	5.292	0.089	0.110	1.481	2.041	0.708	nan	0.348	0.242	0.010	0.076	0.313	0.202	0.205	0.292	0.089	0.356	0.034	0.382
5178	chr22	17792378	17801296	+	0	NA	Intergenic	Intergenic	-44002	NM_001290046	27443	Hs.231895	NM_031413	ENSG00000099954	CECR2	-	CECR2, histone acetyl-lysine reader	protein-coding	0.903	nan	0.599	0.495	0.296	0.216	0.260	0.075	0.108	0.406	0.214	0.161	0.419	0.049	0.072	0.432	0.408	0.268	0.303	0.309	0.313	0.936	0.225	0.334	0.293	0.299	0.530	0.987	0.991	0.494	0.148	0.159	0.177	0.322	0.268	0.260	0.442	5.051	2.624	0.258	2.645	0.043	0.079	0.260	0.161	0.168	0.125	0.016	0.083
3363	chr17	32180744	32200632	+	0	NA	intron (NM_001094, intron 1 of 9)	MER113|DNA|hAT-Charlie	293137	NM_001094	40	Hs.368417	NM_001094	ENSG00000108684	ASIC2	ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1	acid sensing ion channel subunit 2	protein-coding	nan	0.760	0.400	0.031	0.228	0.137	0.128	0.098	0.065	0.102	0.137	0.048	0.413	0.052	0.088	0.770	1.584	0.128	0.163	nan	0.231	0.181	0.070	0.242	0.275	0.151	0.228	0.159	0.170	nan	0.124	0.316	0.587	1.780	3.112	0.220	0.280	0.191	0.286	0.126	0.094	0.767	0.036	0.128	0.048	0.005	0.077	0.327	0.075
1219	chr10	115711079	115723532	+	0	NA	Intergenic	L1MB2|LINE|L1	-86501	NM_000684	153	Hs.99913	NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|RHR	adrenoceptor beta 1	protein-coding	0.676	nan	0.623	0.838	3.815	2.008	0.332	0.162	0.051	2.286	0.649	0.317	2.198	0.052	0.064	0.416	0.332	0.937	2.634	0.105	0.133	8.337	6.126	0.257	0.271	0.223	0.388	9.143	12.838	0.161	0.047	2.354	3.516	3.868	3.548	0.198	0.244	2.621	1.573	1.035	2.180	0.525	0.135	0.332	0.317	0.016	0.882	2.589	0.200
2534	chr14	31674875	31678623	+	0	NA	promoter-TSS (NM_015382)	promoter-TSS (NM_015382)	-20	NM_015382	25831	Hs.708017	NM_015382	ENSG00000092148	HECTD1	EULIR	HECT domain E3 ubiquitin protein ligase 1	protein-coding	10.985	5.078	6.785	8.956	8.727	5.204	5.556	10.203	0.681	1.950	1.446	8.098	15.097	6.428	0.177	6.000	6.395	11.276	16.954	14.101	15.144	6.952	3.498	19.583	20.741	5.979	7.664	10.521	17.762	10.763	11.403	6.798	13.459	9.308	9.538	7.236	5.224	3.585	1.758	5.315	7.465	1.791	9.224	5.556	8.098	2.102	5.418	2.536	2.048
5525	chr3	127283351	127294901	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	5048	NR_106883	102466199		NR_106883	ENSG00000275067	MIR6825	hsa-mir-6825	microRNA 6825	ncRNA	1.156	nan	0.971	0.330	0.367	0.263	0.772	0.258	0.124	0.224	0.227	0.176	2.216	0.065	0.061	0.332	0.356	0.246	0.269	1.029	0.867	1.763	0.374	0.470	0.441	0.681	nan	0.260	0.339	1.182	0.990	0.458	0.605	0.273	0.465	0.534	0.781	1.001	0.812	5.285	0.986	0.050	0.298	0.772	0.176	0.293	0.059	0.185	0.148
6772	chr6	43223274	43228233	+	0	NA	intron (NM_032538, intron 10 of 14)	intron (NM_032538, intron 10 of 14)	14335	NM_032538	84630	Hs.485436	NM_032538	ENSG00000146216	TTBK1	BDTK	tau tubulin kinase 1	protein-coding	0.968	0.536	1.014	0.072	0.363	0.097	0.348	0.152	0.096	0.189	0.067	0.089	0.390	0.087	0.092	2.099	3.253	8.780	7.298	0.416	0.527	0.540	0.281	2.300	2.469	0.235	0.457	0.440	nan	0.525	0.236	2.233	1.999	0.093	0.161	0.361	0.482	0.762	0.584	0.034	0.172	0.019	0.081	0.348	0.089	0.136	0.045	0.893	0.152
6173	chr5	11421322	11434173	+	0	NA	intron (NR_109988, intron 3 of 21)	MER45B|DNA|hAT-Tip100	161282	NM_001288715	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding	nan	nan	nan	0.110	0.142	0.131	0.140	0.124	0.226	0.225	0.321	0.045	nan	0.017	0.098	0.532	0.251	0.268	0.333	0.259	0.304	0.077	0.042	0.279	0.288	nan	4.472	0.186	0.255	0.759	0.436	0.213	0.355	0.150	0.097	0.096	nan	0.591	0.597	0.002	0.116	0.008	0.013	0.140	0.045	0.234	0.103	0.147	0.029
5500	chr3	119050130	119065687	+	0	NA	intron (NM_020754, intron 1 of 11)	intron (NM_020754, intron 1 of 11)	-16301	NR_046748	100874246	Hs.607097	NR_046748	ENSG00000241155	ARHGAP31-AS1	-	ARHGAP31 antisense RNA 1	ncRNA	0.855	nan	0.642	0.169	0.370	0.228	0.154	0.356	0.113	0.132	0.079	0.082	0.243	0.035	0.081	0.388	0.310	0.230	0.291	0.317	nan	0.189	0.120	0.331	0.268	nan	1.376	0.190	0.219	0.514	0.280	0.106	0.144	0.032	0.064	0.281	0.491	2.675	1.288	0.032	0.085		0.082	0.154	0.082	0.024	0.019	0.006	0.104
1749	chr11	133985098	133997650	+	0	NA	intron (NM_032801, intron 1 of 8)	intron (NM_032801, intron 1 of 8)	52554	NM_032801	83700	Hs.150718	NM_032801	ENSG00000166086	JAM3	JAM-2|JAM-3|JAM-C|JAMC	junctional adhesion molecule 3	protein-coding	0.677	nan	0.533	0.133	0.388	0.293	0.199	0.041	0.013	0.436	0.309	0.487	nan	0.095	0.149	6.427	8.449	1.170	1.490	0.861	0.782	0.689	0.254	0.129	0.136	1.840	2.835	0.756	0.672	0.481	0.334	2.960	6.032	0.159	0.141	0.305	0.646	0.582	0.512	0.143	0.615	0.008	0.327	0.199	0.487	0.200	0.106	3.213	0.119
7799	chr8	95650428	95657534	+	0	NA	intron (NM_001034915, intron 1 of 15)	CpG	617	NM_001034915	54845	Hs.487471	NM_017697	ENSG00000104413	ESRP1	RBM35A|RMB35A	epithelial splicing regulatory protein 1	protein-coding	nan	3.880	7.057	9.993	8.700	4.985	0.556	0.086	0.113	2.135	0.930	10.530	21.136	0.152	0.070	4.366	5.405	4.511	nan	11.870	9.886	8.467	2.994	11.214	11.844	0.190	0.299	6.837	9.615	0.649	0.415	4.313	7.676	8.595	8.573	0.200	0.763	2.337	1.328	7.588	8.865	2.352	5.205	0.556	10.530	0.396	0.072	4.635	0.017
2128	chr12	107152997	107201493	+	0	NA	intron (NM_001330146, intron 1 of 8)	intron (NM_001330146, intron 1 of 8)	-8636	NR_040246	100287944	Hs.742087	NR_040246	ENSG00000257545	LOC100287944	-	uncharacterized LOC100287944	ncRNA	1.192	0.959	nan	0.522	0.713	0.426	0.532	0.520	0.150	0.421	0.345	0.573	1.211	2.186	0.171	0.743	0.577	1.691	1.774	1.026	1.117	2.066	0.909	9.024	9.446	1.209	1.601	0.979	1.121	0.801	0.603	0.321	0.597	1.227	1.612	0.502	0.733	1.671	0.961	0.292	0.526	0.277	0.420	0.532	0.573	0.146	0.422	0.239	0.185
3926	chr19	505850	525303	+	0	NA	intron (NM_033513, intron 1 of 1)	AluSc|SINE|Alu	8079	NM_033513	91978	Hs.369613	NM_033513	ENSG00000141933	TPGS1	C19orf20|GTRGEO22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	1.526	2.392	1.535	1.872	6.107	3.418	2.633	0.383	0.100	1.176	0.599	3.653	4.783	0.996	0.080	1.486	1.629	0.956	1.579	5.051	4.564	2.996	1.426	1.749	1.999	1.248	1.922	3.525	nan	2.183	2.345	0.790	1.164	3.398	3.463	1.218	1.305	3.217	1.498	3.103	3.100	0.804	0.970	2.633	3.653	0.549	3.080	0.363	0.394
8315	chr9	136445156	136458821	+	0	NA	Intergenic	Intergenic	-6620	NM_001080515	642968	Hs.173134	NM_001080515	ENSG00000196990	FAM163B	C9orf166	family with sequence similarity 163 member B	protein-coding	nan	0.592	1.171	3.484	1.819	0.868	1.621	0.077	0.072	1.190	0.688	4.819	1.771	0.008	0.037	0.345	0.732	0.082	0.169	5.704	6.623	nan	0.400	0.085	0.064	0.063	0.107	4.155	3.367	0.780	0.480	0.306	0.468	1.037	0.857	0.201	0.331	1.459	0.639	3.459	1.220	0.440	0.174	1.621	4.819	0.170	2.404	0.441	0.072
8391	chrX	56789710	56815904	+	0	NA	intron (NR_015367, intron 2 of 2)	intron (NR_015367, intron 2 of 2)	-38790	NR_002308	442454	Hs.663220	NR_002308		UQCRBP1	-	ubiquinol-cytochrome c reductase binding protein pseudogene 1	pseudo	0.837	0.619	1.398	0.449	0.418	0.285	0.088	0.135	0.086	0.737	0.353	1.269	7.189	0.157	0.114	0.352	0.219	1.698	2.500	1.643	1.400	5.116	3.172	6.291	6.390	0.229	0.382	0.279	0.448	1.406	1.127	0.161	0.148	0.111	0.127	0.296	0.379	1.028	0.731	0.028	1.226	0.017	0.185	0.088	1.269	0.052	3.942	0.030	0.102
6343	chr5	81138094	81155955	+	0	NA	Intergenic	Intergenic	-99952	NM_001345886	23635	Hs.102735	NM_012446	ENSG00000145687	SSBP2	HSPC116|SOSS-B2	single stranded DNA binding protein 2	protein-coding	1.507	2.532	1.146	1.440	0.990	0.440	1.992	1.151	0.128	0.806	0.437	1.010	4.399	1.141	0.159	0.523	0.760	0.963	1.822	0.946	1.137	1.864	0.643	1.310	1.374	3.936	4.975	2.909	4.735	2.627	2.542	0.590	1.120	1.652	1.169	0.614	nan	1.016	0.621	1.073	1.985	0.502	0.855	1.992	1.010	0.207	0.926	1.270	0.278
7905	chr8	123791846	123795871	+	0	NA	promoter-TSS (NM_014943)	promoter-TSS (NM_014943)	-43	NM_014943	22882	Hs.377090	NM_014943	ENSG00000178764	ZHX2	AFR1|RAF	zinc fingers and homeoboxes 2	protein-coding	nan	nan	11.896	3.580	2.908	1.066	1.878	4.300	0.198	0.511	0.263	3.402	11.195	1.750	0.113	0.806	1.353	12.852	14.699	5.821	4.569	3.096	0.789	nan	15.605	3.270	4.750	2.918	4.618	2.973	4.407	1.460	2.868	3.875	4.328	0.587	1.888	2.265	1.397	2.554	0.401	0.668	1.202	1.878	3.402	2.203	1.438	0.738	0.584
7783	chr8	91329763	91339110	+	0	NA	intron (NR_051989, intron 2 of 3)	intron (NR_051989, intron 2 of 3)	100720	NR_051989	100874052	Hs.571514	NR_051989	ENSG00000253394	LINC00534	-	long intergenic non-protein coding RNA 534	ncRNA	nan	2.592	2.700	2.435	0.380	0.068	4.106	0.206	0.034	0.351	0.135	0.090	4.380	0.006	0.069	0.228	0.155	0.264	nan	2.200	1.953	2.972	1.041	0.243	0.243	0.179	0.280	6.433	7.221	1.078	0.768	0.077	0.200	6.299	7.655	1.116	3.540	1.408	0.923	0.402	0.440	2.264	0.559	4.106	0.090	0.032	0.512	0.021	2.101
7755	chr8	74267622	74288784	+	0	NA	Intergenic	MIRc|SINE|MIR	-9507	NR_125388	101926926	Hs.640090	NR_125388	ENSG00000250295	RDH10-AS1	-	RDH10 antisense RNA 1	ncRNA	2.092	1.589	1.434	1.592	1.090	0.636	0.419	0.257	0.068	0.141	0.116	0.587	1.377	0.087	0.070	0.341	0.249	0.373	0.599	0.747	0.764	2.176	0.769	0.243	0.257	0.578	1.024	2.108	2.240	0.762	0.691	0.182	0.404	1.240	1.161	0.286	0.460	3.841	2.317	0.042	0.223	0.193	0.119	0.419	0.587	0.148	2.163	0.047	0.112
7492	chr7	133417952	133432091	+	0	NA	intron (NM_021807, intron 10 of 17)	Tigger10|DNA|TcMar-Tigger	84620	NR_120513	101928861	Hs.675747	NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA	nan	nan	nan	0.119	0.389	0.149	0.150	0.335	0.090	0.110	0.173	0.359	0.303	0.178	0.165	0.486	0.270	0.332	0.584	0.400	0.446	nan	0.173	0.278	0.277	4.110	nan	0.278	0.272	nan	0.163	0.226	0.373	0.867	0.899	0.334	0.794	1.217	nan	0.121	0.106	0.257	0.045	0.150	0.359	0.021	0.050	0.056	0.122
7103	chr6	169310494	169317674	+	0	NA	Intergenic	Intergenic	50393	NR_136248	105378146	Hs.343631	NR_136248		LOC105378146	-	uncharacterized LOC105378146	ncRNA	0.484	nan	1.572	0.720	0.404	0.160	0.373	0.042	0.178	0.110	0.102	6.146	0.481	0.045	0.081	0.307	0.153	0.184	0.204	2.058	2.126	2.171	0.746	0.147	0.101	0.063	0.093	1.144	2.752	nan	0.169	0.202	0.145	0.075	0.150	0.094	0.065	0.529	0.557	0.077	0.262		0.088	0.373	6.146		0.029	0.016	0.017
2737	chr14	91735105	91753778	+	0	NA	exon (NM_001080414, exon 29 of 30)	exon (NM_001080414, exon 29 of 30)	-24217	NM_003485	8111	Hs.8882	NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding	2.228	0.845	nan	0.393	0.319	0.147	0.597	0.145	0.112	0.285	0.328	0.354	0.571	0.104	0.082	0.318	0.389	0.347	0.547	1.443	1.588	0.618	0.163	0.969	1.026	1.146	1.386	3.377	2.544	0.964	0.909	0.315	0.482	0.270	0.297	0.245	0.601	nan	0.934	8.598	1.097	0.072	0.184	0.597	0.354	0.155	0.065	0.084	0.139
7720	chr8	64557221	64562476	+	0	NA	Intergenic	Intergenic	-122140	NR_038875	286184	Hs.586402	NR_038875	ENSG00000253734	LINC01289	-	long intergenic non-protein coding RNA 1289	ncRNA	0.776	0.555	0.694	0.068	0.038	0.092	0.074	0.085	0.123	0.060	0.109	0.068	0.310	0.020	0.110	5.630	7.889	2.550	0.945	0.285	0.323	6.494	2.849	0.387	0.390	0.129	nan	0.139	0.163	nan	0.256	9.452	10.109	0.475	0.301	0.221	0.656	0.855	0.571	0.010	0.050	0.018		0.074	0.068			6.179	0.542
804	chr1	204261559	204284985	+	0	NA	intron (NM_014935, intron 1 of 22)	intron (NM_014935, intron 1 of 22)	55785	NM_014935	22874	Hs.253146	NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding	1.298	1.788	1.845	0.944	1.109	0.589	0.224	0.299	0.095	0.400	0.298	1.696	1.296	0.065	0.106	1.463	1.805	0.554	0.945	2.123	2.354	1.586	0.790	nan	nan	2.358	3.004	1.771	2.526	1.315	0.974	0.472	0.707	0.204	0.196	0.369	0.617	0.764	0.614	0.829	2.740	0.036	0.888	0.224	1.696	0.249	0.090	0.224	0.188
5728	chr3	182066327	182084576	+	0	NA	Intergenic	L1ME4a|LINE|L1	128699	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA	1.052	1.516	0.766	2.566	1.195	0.571	0.281	0.090	0.151	0.677	0.304	0.509	1.819	0.053	0.125	0.243	0.197	0.207	0.247	0.641	0.757	4.292	1.734	0.152	0.150	0.555	1.000	1.224	1.369	0.574	0.271	0.143	0.223	1.709	1.556	0.178	0.252	0.859	0.513	0.195	0.686	0.271	0.578	0.281	0.509	0.037	0.585	0.041	0.060
5514	chr3	124064937	124086156	+	0	NA	intron (NM_001024660, intron 10 of 59)	L2c|LINE|L2	-17633	NR_106731	102464832		NR_106731	ENSG00000276656	MIR6083	hsa-mir-6083	microRNA 6083	ncRNA	1.358	nan	1.228	0.318	0.416	0.189	0.221	0.302	0.143	0.781	0.383	0.356	0.375	0.031	0.075	0.435	0.341	1.569	1.955	0.663	0.782	10.336	2.747	0.484	0.518	0.656	nan	0.772	0.716	1.213	1.012	0.187	0.317	0.885	0.664	1.093	3.136	1.539	0.868	0.084	0.184	0.207	0.086	0.221	0.356	0.239	0.100	0.051	1.254
8095	chr9	24034910	24046503	+	0	NA	Intergenic	Intergenic	-214643	NM_004432	1993	Hs.166109	NM_004432	ENSG00000107105	ELAVL2	HEL-N1|HELN1|HUB	ELAV like RNA binding protein 2	protein-coding	0.825	nan	nan	0.053	0.130	0.138	0.240	0.067	0.056	0.394	0.229	0.031	0.247	0.037	0.075	0.168	0.115	0.189	0.352	0.553	0.469	0.160	0.057	0.079	0.037	1.700	2.239	0.113	0.143	3.007	2.935	0.177	0.214	4.568	7.720	0.681	1.689	1.202	1.100	0.019	0.023	1.630	0.014	0.240	0.031	0.284	0.194	0.067	0.127
5962	chr4	83418889	83451489	+	0	NA	intron (NM_001080506, intron 1 of 7)	MLT1J-int|LTR|ERVL-MaLR	47937	NM_001080506	441027	Hs.507676	NM_001080506	ENSG00000249242	TMEM150C	TTN3	transmembrane protein 150C	protein-coding	0.801	1.113	0.663	0.373	1.311	0.687	0.350	0.147	0.114	0.369	0.207	1.286	1.055	0.049	0.061	0.460	0.629	0.542	0.746	0.967	0.979	3.639	1.536	0.287	0.295	0.208	nan	4.224	4.178	0.372	0.219	0.129	0.207	1.178	1.355	0.150	nan	1.355	0.679	1.365	0.363	0.352	0.109	0.350	1.286	0.048	0.417	0.055	0.049
4503	chr2	134162692	134197622	+	0	NA	intron (NM_207481, intron 3 of 17)	intron (NM_207481, intron 3 of 17)	145874	NM_207481	344148	Hs.537329	NM_207363	ENSG00000176771	NCKAP5	ERIH1|ERIH2|NAP5	NCK associated protein 5	protein-coding	nan	0.827	nan	1.067	0.212	0.165	0.220	0.233	0.097	0.082	0.092	0.366	0.689	0.028	0.070	0.398	0.387	5.392	7.186	0.276	0.326	0.137	0.086	0.209	0.233	0.158	0.244	0.581	nan	0.446	0.243	0.151	0.293	0.071	0.190	0.452	1.125	0.437	0.372	0.108	0.092	0.011	0.034	0.220	0.366	0.011	0.998	0.094	0.184
8407	chrX	124058055	124070476	+	0	NA	intron (NM_001163279, intron 1 of 31)	intron (NM_001163279, intron 1 of 31)	33401	NM_001163279	10178	Hs.23796	NM_014253	ENSG00000009694	TENM1	ODZ1|ODZ3|TEN-M1|TNM|TNM1	teneurin transmembrane protein 1	protein-coding	0.765	nan	3.603	0.693	0.543	0.117	0.289	0.042	0.039	1.333	0.762	0.232	0.274	0.026	0.049	0.189	0.099	0.165	0.155	0.128	0.162	7.335	3.657	0.116	0.163	1.098	1.663	2.193	2.221	0.321	0.123	0.070	0.150	2.881	2.277	0.273	0.493	0.417	0.243	0.013	0.122	0.795	0.153	0.289	0.232		0.040	0.008	0.206
1385	chr11	35638110	35653444	+	0	NA	Intergenic	MIR3|SINE|MIR	6042	NM_014344	24147	Hs.39384	NM_014344	ENSG00000179431	FJX1	-	four jointed box 1	protein-coding	0.915	1.405	nan	1.024	1.125	0.712	1.660	0.887	0.136	1.043	0.561	4.937	1.522	0.418	0.097	3.021	3.486	3.489	8.726	5.033	4.083	2.816	0.857	2.765	2.795	1.673	2.882	0.520	1.114	1.011	1.349	0.627	1.572	3.585	2.394	1.636	nan	1.480	1.100	0.054	0.081	0.884	0.468	1.660	4.937	0.808	0.391	0.502	0.774
5168	chr21	46115160	46134272	+	0	NA	intron (NM_001272037, intron 1 of 12)	intron (NM_001272037, intron 1 of 12)	6779	NM_144991	54084	Hs.660703	NM_144991	ENSG00000175894	TSPEAR	C21orf29|DFNB98|TSP-EAR	thrombospondin type laminin G domain and EAR repeats	protein-coding	nan	1.275	2.316	0.658	0.903	0.480	0.478	0.051	0.067	0.922	0.388	1.822	7.626	0.056	0.064	0.291	0.194	0.191	0.583	4.185	4.008	nan	0.501	0.176	0.109	0.112	nan	1.598	3.555	1.024	1.073	0.228	0.212	3.320	1.891	0.122	0.165	4.310	1.918	2.602	4.026	0.549	0.029	0.478	1.822	0.268	0.937	0.005	0.026
4156	chr19	57822612	57833344	+	0	NA	Intergenic	L1PA15|LINE|L1	-3887	NM_213598	125919	Hs.202544	NM_213598	ENSG00000178229	ZNF543	-	zinc finger protein 543	protein-coding	2.165	1.373	1.383	1.742	2.475	1.179	1.123	0.567	0.159	0.509	0.222	1.806	1.805	0.798	0.145	2.654	2.512	2.020	2.313	2.139	2.107	3.683	1.441	1.786	1.649	0.988	1.418	1.703	2.414	2.698	2.397	1.061	1.754	1.624	1.939	1.123	1.540	4.652	1.997	0.761	1.057	0.250	0.472	1.123	1.806	0.245	0.669	0.306	0.381
1818	chr12	9593859	9602571	+	0	NA	intron (NR_033399, intron 1 of 26)	MLT1M|LTR|ERVL-MaLR	2553	NR_033399	440081	Hs.447869	NM_004400		DDX12P	CHLR2|DDX12	DEAD/H-box helicase 12, pseudogene	pseudo	2.711	nan	nan	4.070	2.008	0.855	1.539	0.465	0.056	1.599	0.715	2.275	4.971	1.760	0.149	2.104	1.848	4.072	5.329	nan	4.718	6.599	2.955	5.844	5.813	2.108	3.098	4.088	6.385	2.548	2.809	1.340	2.524	5.429	5.896	3.077	nan	1.384	0.977	1.946	1.381	1.957	0.918	1.539	2.275	0.393	1.094	0.930	0.921
7435	chr7	111333510	111354120	+	0	NA	Intergenic	L1PA7|LINE|L1	-104746	NR_103806	100506413	Hs.677513	NR_103806	ENSG00000225572	DOCK4-AS1	-	DOCK4 antisense RNA 1	ncRNA	nan	0.777	1.431	0.123	0.238	0.124	0.124	0.106	0.126	0.106	0.129	0.102	0.226	0.069	0.173	0.371	0.231	0.231	0.272	0.245	0.313	0.199	0.085	0.226	0.209	0.295	0.414	0.170	0.225	0.842	0.641	0.158	0.247	0.069	0.136	1.527	6.218	0.597	0.589	0.157	0.095	0.018	0.089	0.124	0.102	0.127	0.025	0.058	1.847
1837	chr12	12418344	12421263	+	0	NA	promoter-TSS (NM_002336)	promoter-TSS (NM_002336)	8	NM_002336	4040	Hs.584775	NM_002336	ENSG00000070018	LRP6	ADCAD2|STHAG7	LDL receptor related protein 6	protein-coding	6.289	2.561	7.262	13.008	5.874	3.671	4.504	2.328	0.055	2.694	1.954	8.151	14.601	5.993	0.112	5.348	5.037	12.070	13.761	18.898	20.169	14.712	6.997	14.366	14.993	4.409	5.991	9.519	14.247	7.843	8.217	6.378	12.277	3.703	3.338	8.092	7.525	2.675	1.378	4.989	5.606	0.756	2.263	4.504	8.151	1.159	1.953	2.963	2.204
143	chr1	24739323	24755066	+	0	NA	intron (NR_136507, intron 2 of 5)	L1ME4a|LINE|L1	4679	NM_001322857	57185	Hs.523442	NM_020448	ENSG00000001461	NIPAL3	DJ462O23.2|NPAL3	NIPA like domain containing 3	protein-coding	1.182	2.274	nan	1.809	1.468	0.758	0.908	0.218	0.124	1.044	0.707	0.722	6.021	0.660	0.114	1.319	2.086	1.140	1.907	3.522	3.377	1.443	0.402	2.632	2.828	0.491	0.854	3.333	4.657	1.475	1.100	0.784	1.340	1.160	1.171	1.294	2.094	2.867	1.459	1.968	1.945	0.175	0.478	0.908	0.722	0.336	0.669	0.616	0.510
7384	chr7	95096292	95109549	+	0	NA	Intergenic	Intergenic	-12293	NM_016116	51666	Hs.602765	NM_016116	ENSG00000005981	ASB4	ASB-4	ankyrin repeat and SOCS box containing 4	protein-coding	nan	1.148	nan	3.306	5.155	2.939	1.791	0.168	0.117	2.769	1.379	2.884	2.834	0.131	0.141	0.433	0.340	0.546	1.254	7.122	6.293	8.933	4.103	0.354	0.382	0.571	0.651	3.823	5.188	1.332	1.486	0.282	0.509	2.922	2.166	0.430	nan	7.039	3.865	0.072	0.564	0.243	0.126	1.791	2.884	0.123	3.125	0.126	0.278
4020	chr19	33522068	33555845	+	0	NA	intron (NM_033103, intron 1 of 14)	intron (NM_033103, intron 1 of 14)	16868	NM_033103	85415	Hs.466435	NM_033103	ENSG00000131941	RHPN2	P76RBE|RHOBP	rhophilin Rho GTPase binding protein 2	protein-coding	1.174	1.504	1.100	1.549	0.601	0.361	0.384	0.426	0.253	0.354	0.278	0.782	3.198	0.332	0.129	0.357	0.470	1.066	4.182	0.650	0.659	0.745	0.291	1.895	1.836	0.496	0.780	1.386	1.473	nan	0.319	0.991	1.389	0.375	0.582	0.383	0.880	0.627	0.660	0.707	0.769	0.101	0.116	0.384	0.782	0.136	0.168	1.620	0.167
7800	chr8	95730461	95733967	+	0	NA	5' UTR (NM_181787, exon 1 of 19)	5' UTR (NM_181787, exon 1 of 19)	111	NM_181787	286148	Hs.567828	NM_181787	ENSG00000156162	DPY19L4	-	dpy-19 like 4 (C. elegans)	protein-coding	5.827	2.372	5.464	5.916	5.228	2.637	3.028	2.566	0.414	1.006	0.663	7.132	14.970	4.309	0.205	6.499	5.524	5.380	8.181	8.683	7.586	6.964	3.027	9.852	10.600	3.786	5.197	16.974	20.802	5.337	5.088	4.056	6.362	5.039	4.959	4.958	6.367	3.712	1.728	2.816	2.991	1.140	2.238	3.028	7.132	0.583	3.273	1.122	2.123
2323	chr13	62588816	62610178	+	0	NA	intron (NR_046995, intron 1 of 1)	intron (NR_046995, intron 1 of 1)	4184	NR_046995	100874143	Hs.552684	NR_046995	ENSG00000229578	LINC00358	-	long intergenic non-protein coding RNA 358	ncRNA	nan	1.272	nan	0.047	2.559	1.242	1.337	0.049	0.054	0.062	0.086	0.192	0.275	0.025	0.096	0.528	0.391	0.160	0.321	0.289	0.377	1.367	0.549	0.128	0.125	0.190	0.233	0.119	0.112	0.304	0.143	0.101	0.223	0.749	0.557	0.390	0.654	0.141	0.093	0.049	0.037	0.152	0.135	1.337	0.192	0.005	0.037	0.065	0.035
6157	chr5	6631923	6636706	+	0	NA	promoter-TSS (NR_037947)	promoter-TSS (NR_037947)	-841	NR_037947	54888	Hs.481526	NM_017755	ENSG00000037474	NSUN2	MISU|MRT5|SAKI|TRM4	NOP2/Sun RNA methyltransferase family member 2	protein-coding	3.533	3.368	9.282	9.817	3.258	1.740	1.292	6.057	0.538	4.374	1.928	4.895	11.949	3.486	0.154	6.985	7.220	6.869	nan	8.460	9.557	6.460	4.164	6.072	6.457	5.004	6.508	nan	7.979	nan	11.525	4.574	6.834	4.436	5.682	5.167	3.739	5.228	nan	1.911	3.160	0.871	0.911	1.292	4.895	1.594	3.042	1.677	0.902
3049	chr16	11870579	11893979	+	0	NA	intron (NM_014153, intron 1 of 22)	intron (NM_014153, intron 1 of 22)	8835	NM_014153	29066	Hs.371856	NM_014153	ENSG00000122299	ZC3H7A	HSPC055|ZC3H7|ZC3HDC7	zinc finger CCCH-type containing 7A	protein-coding	2.161	1.457	nan	2.267	2.909	1.643	1.275	1.139	0.239	1.100	0.498	4.658	5.836	0.823	0.099	1.544	2.353	1.356	2.664	3.843	3.720	5.705	1.634	3.414	3.628	1.834	2.798	3.529	3.448	nan	4.835	1.194	2.429	3.042	4.348	1.887	2.838	3.547	1.354	1.611	1.481	1.055	2.115	1.275	4.658	1.576	3.195	1.030	1.376
2822	chr15	27416506	27432419	+	0	NA	intron (NM_033223, intron 3 of 9)	intron (NM_033223, intron 3 of 9)	-17996	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	GABRG3-AS1	-	GABRG3 antisense RNA 1	ncRNA	nan	0.361	nan	0.072	0.177	0.076	0.056	0.033	0.131	0.115	0.126	0.045	4.144	0.041	0.066	0.287	0.246	0.433	0.532	0.525	0.516	0.087	0.066	0.101	0.114	0.194	0.307	3.414	3.147	nan	0.220	0.210	0.339	0.100	0.086	0.128	0.208	0.685	0.659	3.670	2.568	0.024	0.044	0.056	0.045	0.043	0.051	0.075	0.024
7703	chr8	62049051	62056351	+	0	NA	Intergenic	Intergenic	-147824	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding	3.205	0.877	1.126	0.484	0.663	0.351	0.845	0.103	0.087	0.281	0.145	1.264	2.637	0.075	0.101	1.136	1.147	0.419	0.438	4.924	4.283	4.166	1.493	0.587	0.514	1.484	nan	1.723	2.596	nan	2.544	1.078	1.196	2.825	2.186	0.655	1.449	2.583	1.778	0.533	0.622	0.378	0.556	0.845	1.264	16.113	0.988	0.148	0.372
7374	chr7	92320505	92362238	+	0	NA	intron (NM_001145306, intron 4 of 7)	AluYk4|SINE|Alu	-121663	NR_109929	257415	Hs.18564	NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding	nan	0.759	nan	0.236	0.454	0.190	0.268	1.699	0.181	0.176	0.165	0.077	0.258	3.022	0.200	0.389	0.323	0.489	0.948	0.250	0.278	0.459	0.172	0.901	0.825	0.849	1.159	0.311	0.333	1.050	0.657	0.397	0.559	0.334	0.418	0.432	nan	0.901	0.821	0.047	0.123	0.041	0.046	0.268	0.077	0.040	0.140	0.166	0.170
2914	chr15	66422912	66467406	+	0	NA	intron (NM_032445, intron 1 of 22)	intron (NM_032445, intron 1 of 22)	100916	NM_032445	84465	Hs.712886	NM_032445	ENSG00000157890	MEGF11	-	multiple EGF like domains 11	protein-coding	1.025	1.688	nan	0.126	5.613	2.917	0.644	0.113	0.043	3.742	1.924	1.915	0.589	0.068	0.081	0.506	0.665	0.331	0.521	2.295	1.953	nan	1.915	0.269	0.246	0.705	1.077	2.748	2.314	1.495	1.554	0.740	0.756	4.448	4.117	0.430	0.993	2.957	1.373	0.324	1.008	1.841	0.100	0.644	1.915	0.635	3.448	0.465	0.153
1211	chr10	112388723	112413079	+	0	NA	Intergenic	MIRb|SINE|MIR	-3254	NM_001134363	282996	Hs.116630	NM_001134363	ENSG00000203867	RBM20	-	RNA binding motif protein 20	protein-coding	0.666	nan	0.726	0.179	0.885	0.381	0.211	0.457	0.046	0.180	0.075	0.211	0.625	0.130	0.092	2.546	3.378	0.465	0.730	0.169	0.161	1.556	0.351	0.079	0.081	1.113	1.374	6.705	7.822	0.520	0.463	1.005	2.090	0.179	0.296	0.395	0.961	0.525	0.328	0.033	2.161	0.008	0.062	0.211	0.211	0.040	1.309	1.158	0.137
2399	chr13	100504522	100530705	+	0	NA	intron (NM_206808, intron 5 of 8)	intron (NM_206808, intron 5 of 8)	91806	NR_120421	101927437	Hs.619936	NR_120421		LOC101927437	-	uncharacterized LOC101927437	ncRNA	1.958	5.332	4.557	0.947	0.315	0.208	10.913	0.175	0.092	1.495	0.974	0.399	1.054	0.058	0.128	0.686	0.466	0.197	0.141	1.150	1.232	2.543	0.866	0.195	0.153	2.888	nan	1.066	1.327	0.923	0.813	0.228	0.506	3.390	4.656	0.458	nan	1.765	0.917	0.115	0.203	1.039	0.169	10.913	0.399	0.767	0.977	0.129	0.165
1542	chr11	78127056	78132246	+	0	NA	promoter-TSS (NM_080491)	promoter-TSS (NM_080491)	-783	NM_080491	9846	Hs.429434	NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding	nan	3.189	3.464	3.735	6.610	3.465	2.206	2.319	0.369	3.974	1.350	5.379	10.073	10.078	0.259	8.631	10.643	7.106	6.977	13.657	10.798	7.850	3.914	14.165	14.576	2.537	3.266	4.441	7.061	1.412	1.401	3.597	7.699	7.065	6.441	3.448	5.310	2.717	1.431	6.617	6.958	1.363	2.867	2.206	5.379	0.933	3.262	5.258	0.974
2102	chr12	98907034	98915546	+	0	NA	intron (NM_001032283, intron 1 of 8)	intron (NM_001032283, intron 1 of 8)	-1286	NR_027157	100128191	Hs.594042	NR_027157	ENSG00000257167	TMPO-AS1	-	TMPO antisense RNA 1	ncRNA	6.279	5.118	4.436	4.980	7.024	3.674	4.388	4.863	1.575	3.474	2.474	6.378	14.291	5.863	0.221	4.976	5.397	6.129	8.608	13.121	11.729	7.901	4.139	12.624	12.871	6.015	nan	6.772	nan	8.871	9.823	3.619	7.576	8.412	8.681	8.039	5.539	3.877	2.192	6.701	6.226	2.541	3.429	4.388	6.378	1.349	1.926	2.045	3.108
478	chr1	119849908	119871322	+	0	NA	Intergenic	Intergenic	-50784	NM_016527	51179	Hs.659767	NM_016527	ENSG00000116882	HAO2	GIG16|HAOX2	hydroxyacid oxidase 2	protein-coding	nan	0.839	0.889	0.148	0.217	0.120	0.275	0.233	0.120	0.037	0.054	0.073	0.573	0.066	0.149	0.361	0.158	0.209	0.297	0.502	nan	0.285	0.093	0.351	0.333	0.481	0.878	0.500	0.555	0.573	0.343	0.310	0.467	0.071	0.039	1.406	4.716	0.384	0.517	0.122	0.883	0.018	0.092	0.275	0.073	0.023	0.067	0.162	0.417
836	chr1	208439430	208452800	+	0	NA	Intergenic	Intergenic	-28450	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding	1.179	1.175	1.137	0.146	0.365	0.180	0.354	1.371	0.195	0.105	0.155	0.121	0.404	0.073	0.102	9.357	11.992	3.300	1.153	0.805	0.739	1.006	0.273	nan	nan	0.574	0.798	0.432	0.430	0.813	0.690	2.665	3.411	0.149	0.171	0.913	2.332	0.649	0.613	1.598	0.052	0.056	0.581	0.354	0.121	0.101	0.069	2.726	0.231
7559	chr7	156791723	156816644	+	0	NA	promoter-TSS (NM_005515)	promoter-TSS (NM_005515)	632	NR_038835	645249	Hs.224879	NR_038835	ENSG00000243479	MNX1-AS1	CCAT5	MNX1 antisense RNA 1 (head to head)	ncRNA	0.777	0.878	nan	1.981	4.601	2.431	1.084	0.070	0.158	1.147	0.510	2.023	1.220	0.900	0.130	3.515	5.092	1.112	1.415	2.293	2.148	2.155	0.714	0.110	0.111	0.361	0.730	3.688	4.325	1.171	1.506	4.342	6.051	0.967	0.869	0.127	0.208	1.624	1.011	1.626	1.555	0.160	0.697	1.084	2.023	0.259	0.485	2.700	0.049
4028	chr19	35152565	35170102	+	0	NA	intron (NR_027620, intron 1 of 3)	L1MD|LINE|L1	6603	NR_027620	643719	Hs.686754	NR_027620		SCGB1B2P	SCGB4A1P	secretoglobin family 1B member 2, pseudogene	pseudo	2.408	1.941	1.726	4.751	1.454	0.833	0.994	0.454	0.119	1.003	0.595	1.534	6.727	1.194	0.127	1.043	1.077	0.645	0.865	3.433	2.912	2.090	0.707	4.685	4.864	1.837	2.339	1.070	1.458	nan	2.123	3.600	3.746	2.989	2.811	0.657	0.884	3.611	1.880	2.052	0.999	0.417	0.286	0.994	1.534	0.334	1.255	1.913	0.295
6767	chr6	42652196	42694935	+	0	NA	intron (NM_000322, intron 1 of 2)	AluSc|SINE|Alu	16793	NM_000322	5961	Hs.654489	NM_000322	ENSG00000112619	PRPH2	AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2	peripherin 2	protein-coding	1.160	0.972	1.114	0.378	0.379	0.227	0.232	0.276	0.125	0.116	0.104	0.278	0.434	0.201	0.133	0.424	0.436	0.290	0.404	0.484	0.532	1.343	0.479	0.492	0.546	0.360	0.632	0.986	nan	1.166	0.829	0.217	0.313	0.180	0.218	1.084	3.677	0.557	0.495	0.170	0.689	0.029	0.089	0.232	0.278	0.052	0.285	0.058	1.749
3068	chr16	18235128	18250838	+	0	NA	Intergenic	Intergenic	183536	NM_001282511	101059953	Hs.636569	NM_001282511	ENSG00000214940	NPIPA8	LCR16a9	nuclear pore complex interacting protein family member A8	protein-coding	0.999	1.577	nan	2.482	0.390	0.164	1.070	0.058	0.102	0.290	0.222	0.030	9.381	0.041	0.075	0.355	0.366	0.161	0.166	1.653	1.888	0.290	0.130	0.137	0.136	0.330	0.516	5.464	7.628	nan	0.654	0.121	0.152	1.295	1.430	0.206	0.274	1.907	0.924	0.480	0.735	0.584	1.370	1.070	0.030	0.308	0.579	0.044	0.190
3989	chr19	17501273	17536415	+	0	NA	intron (NR_130765, intron 3 of 4)	LTR13|LTR|ERVK	2349	NR_130765	105221694	Hs.729686	NR_130765	ENSG00000282851	BISPR	lncBST2	BST2 interferon stimulated positive regulator (non-protein coding)	ncRNA	1.434	1.014	1.071	0.321	0.441	0.208	0.341	0.781	0.243	0.195	0.193	0.320	0.705	0.395	0.124	0.502	0.452	0.546	0.684	0.609	0.606	1.584	0.370	0.194	0.245	0.591	0.991	0.646	0.724	1.257	0.921	0.267	0.351	0.325	0.322	1.529	3.692	1.060	0.664	0.152	0.195	0.043	0.107	0.341	0.320	0.192	0.602	0.121	1.346
3512	chr17	67306087	67324799	+	0	NA	intron (NM_172232, intron 1 of 38)	intron (NM_172232, intron 1 of 38)	-3669	NM_018672	23461	Hs.731824	NM_018672	ENSG00000154265	ABCA5	ABC13|EST90625	ATP binding cassette subfamily A member 5	protein-coding	2.416	nan	3.418	1.745	1.171	0.588	0.391	0.440	0.128	0.746	0.427	1.585	1.085	0.064	0.115	1.411	1.902	1.487	1.394	2.940	2.679	0.765	0.239	1.150	1.227	0.570	nan	1.701	2.185	7.151	6.293	0.478	0.750	0.103	0.118	3.800	8.436	1.239	0.787	0.145	0.546	0.035	3.103	0.391	1.585	0.629	0.483	0.243	3.221
7237	chr7	30285213	30303348	+	0	NA	intron (NR_136267, intron 2 of 3)	intron (NR_136267, intron 2 of 3)	-29643	NM_147128	223082	Hs.263912	NM_147128	ENSG00000180233	ZNRF2	RNF202	zinc and ring finger 2	protein-coding	1.577	1.250	4.535	0.278	0.688	0.318	0.205	0.222	0.196	0.475	0.252	0.624	0.703	0.090	0.148	1.903	1.347	0.807	0.522	1.689	nan	1.319	0.329	0.734	0.696	1.337	nan	nan	nan	0.741	0.692	0.405	0.544	1.670	1.915	0.790	nan	1.978	1.094	0.178	0.329	0.409	0.585	0.205	0.624	0.182	0.134	0.163	0.348
8257	chr9	123630370	123669382	+	0	NA	intron (NM_001286840, intron 1 of 14)	MLT2C1|LTR|ERVL	7298	NM_001286840	26147	Hs.460124	NM_015651	ENSG00000119403	PHF19	MTF2L1|PCL3|TDRD19B	PHD finger protein 19	protein-coding	nan	nan	1.426	1.992	1.385	0.694	1.012	0.412	0.165	0.913	0.419	1.558	nan	0.682	0.094	0.718	0.876	0.895	1.167	3.744	3.358	1.043	0.497	1.448	1.505	0.731	nan	4.664	3.925	1.859	1.816	0.410	0.711	1.652	1.888	0.930	2.287	nan	0.845	3.675	1.666	0.525	0.346	1.012	1.558	0.316	1.011	0.267	0.809
5906	chr4	55408188	55417006	+	0	NA	Intergenic	Intergenic	60701	NR_134657	339978		NR_134657	ENSG00000250456	LOC339978	-	uncharacterized LOC339978	ncRNA	nan	0.561	1.054	0.671	1.695	0.870	0.146	0.486	0.073	0.447	0.277	0.382	1.090	0.027	0.079	2.423	4.806	5.390	4.767	0.416	0.541	1.506	0.340	3.675	3.926	0.175	0.355	3.743	2.944	0.403	0.184	3.549	6.237	0.361	0.233	0.111	0.166	6.812	3.497	0.088	0.247	0.076	0.018	0.146	0.382	0.044	0.392	6.146	0.085
7448	chr7	115542221	115552315	+	0	NA	Intergenic	Intergenic	61099	NM_001244583	22797	Hs.125962	NM_012252	ENSG00000105967	TFEC	TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L	transcription factor EC	protein-coding	nan	0.558	0.774	0.135	0.246	0.111	0.164	0.180	0.175	0.111	0.285	0.260	0.342	0.053	0.118	0.423	0.287	0.243	0.344	0.145	0.227	0.141	0.110	0.350	0.333	0.666	0.781	0.407	0.342	0.426	0.146	0.173	0.269	3.979	5.976	0.338	0.486	0.459	0.583	0.045	0.139	1.152	0.055	0.164	0.260	0.049	0.101	0.069	0.102
8149	chr9	70645028	70651965	+	0	NA	Intergenic	TAR1|Satellite|telo	-158285	NM_001286836	220869	Hs.355950	NM_001024916	ENSG00000147996	CBWD5	DC36	COBW domain containing 5	protein-coding	nan	nan	nan	4.037	1.416	0.785	2.511	0.671	0.158	1.958	1.237	2.243	4.392	1.087	0.056	3.622	4.017	1.975	nan	4.035	nan	6.184	2.197	10.710	10.975	2.284	2.525	2.012	2.993	2.653	3.059	3.195	5.902	4.098	3.545	2.653	2.911	2.391	1.483	0.554	1.677	1.413	2.260	2.511	2.243	2.919	4.804	2.299	1.365
7822	chr8	98559084	98573649	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-90041	NM_178812	92140	Hs.377155	NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding	nan	0.840	1.110	0.168	0.374	0.153	0.169	0.311	0.088	0.044	0.075	0.272	0.767	0.069	0.069	0.337	0.150	3.219	nan	0.598	0.784	1.147	0.330	0.492	0.596	6.891	8.631	0.733	0.862	0.549	0.243	0.255	0.460	0.137	0.233	0.319	0.705	0.561	0.524	0.053	0.098	0.007	0.065	0.169	0.272	0.020	0.210	0.108	0.149
343	chr1	64255994	64284237	+	0	NA	intron (NM_001083592, intron 1 of 6)	L1MD2|LINE|L1	30425	NM_001083592	4919	Hs.128753	NM_005012	ENSG00000185483	ROR1	NTRKR1|dJ537F10.1	receptor tyrosine kinase like orphan receptor 1	protein-coding	1.833	1.116	nan	0.155	0.331	0.188	0.221	1.038	0.113	0.088	0.137	0.076	0.555	0.027	0.099	0.352	0.380	0.257	0.350	0.509	0.541	0.169	0.080	0.623	0.699	nan	nan	0.352	nan	1.653	1.411	0.377	0.543	0.689	0.836	1.782	4.211	0.689	0.708	0.091	0.054	0.198	1.058	0.221	0.076	0.593	0.129	0.157	0.935
3910	chr18	75477007	75503803	+	0	NA	Intergenic	Intergenic	215278	NR_104127	101927715	Hs.385670	NR_104127		LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA	nan	nan	0.511	0.096	1.610	0.761	0.555	0.028	0.053	0.152	0.127	2.202	0.346	0.016	0.075	0.319	0.142	0.234	0.303	2.680	nan	8.901	3.181	0.127	0.183	0.084	0.149	0.654	nan	0.246	0.119	0.095	0.076	0.486	0.396	0.099	0.229	0.791	0.575	0.044	0.420	0.032	0.080	0.555	2.202	0.007	0.038	0.026	0.028
6230	chr5	34230873	34266096	+	0	NA	Intergenic	Intergenic	-123851	NR_037951	100534612	Hs.171929	NR_037951	ENSG00000273294	C1QTNF3-AMACR	-	C1QTNF3-AMACR readthrough (NMD candidate)	ncRNA	1.109	2.479	nan	2.986	1.120	0.548	0.941	1.077	0.205	2.256	1.586	2.394	9.067	0.395	0.165	1.217	1.132	1.351	2.311	3.221	3.076	3.722	1.791	1.837	1.871	5.652	5.693	2.448	3.725	5.148	4.140	0.646	1.419	3.550	4.682	0.668	0.993	2.771	1.315	0.594	1.205	2.127	1.126	0.941	2.394	0.756	1.243	0.912	0.319
5840	chr4	15679766	15698177	+	0	NA	exon (NM_001145191, exon 2 of 2)	exon (NM_001145191, exon 2 of 2)	5619	NM_001145191	285550	Hs.399980	NM_001145191	ENSG00000237765	FAM200B	-	family with sequence similarity 200 member B	protein-coding	nan	nan	nan	1.885	0.582	0.383	0.960	1.006	0.191	0.944	0.550	1.488	1.912	0.619	0.101	1.852	1.793	3.867	6.209	1.927	2.116	2.164	0.930	3.031	3.165	1.480	1.825	1.600	2.219	2.344	1.814	0.857	1.442	0.891	0.979	1.350	2.619	nan	0.789	0.436	0.957	0.110	0.650	0.960	1.488	0.154	0.313	0.457	0.986
857	chr1	213295824	213314831	+	0	NA	intron (NM_001136138, intron 5 of 13)	intron (NM_001136138, intron 5 of 13)	80752	NM_001287219	26750	Hs.591416	NM_012424	ENSG00000136643	RPS6KC1	RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1	ribosomal protein S6 kinase C1	protein-coding	1.304	1.390	2.304	1.470	1.190	0.531	0.173	0.225	0.142	4.134	2.106	0.732	nan	0.112	0.167	0.517	0.540	0.594	0.790	0.642	1.042	nan	4.182	0.658	0.621	1.188	nan	1.624	2.137	0.591	0.303	0.109	0.175	1.595	1.548	0.520	0.895	1.650	0.812	0.035	0.080	0.261	0.238	0.173	0.732	0.091	0.053	0.021	0.122
707	chr1	182807310	182812469	+	0	NA	intron (NR_033302, intron 1 of 28)	MIRb|SINE|MIR	1450	NR_033302	1660	Hs.191518	NM_001357	ENSG00000135829	DHX9	DDX9|LKP|NDH2|NDHII|RHA	DExH-box helicase 9	protein-coding	nan	4.388	5.194	3.222	4.685	2.423	3.283	2.275	0.560	3.036	1.575	3.761	7.830	3.462	0.189	7.619	6.685	8.649	12.112	8.724	nan	7.730	3.774	nan	11.602	4.125	5.581	5.831	9.378	6.830	7.078	7.857	12.777	7.625	10.011	7.819	8.419	3.685	2.066	2.646	4.173	1.759	2.697	3.283	3.761	0.716	1.552	3.578	2.591
5738	chr3	182969729	182987799	+	0	NA	intron (NM_032047, intron 1 of 1)	intron (NM_032047, intron 1 of 1)	7732	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	1.979	1.889	1.246	4.111	4.033	1.837	0.444	0.207	0.251	4.247	1.571	6.039	10.047	0.433	0.104	2.181	3.030	1.861	2.581	4.616	4.483	4.573	1.197	2.400	2.300	1.310	1.942	5.058	6.816	0.794	0.621	0.747	1.313	4.159	3.592	0.241	0.330	2.916	1.736	1.869	0.997	0.582	0.888	0.444	6.039	0.105	0.990	0.209	0.218
261	chr1	42792635	42811991	+	0	NA	promoter-TSS (NM_001198850)	promoter-TSS (NM_001198850)	-765	NM_001198850	22887	Hs.26023	NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding	19.941	3.672	nan	5.896	6.993	3.401	1.838	0.771	0.167	4.244	2.020	11.308	9.114	0.964	0.134	0.887	1.045	1.151	1.787	6.202	6.914	5.777	2.219	2.379	2.373	2.448	nan	nan	11.039	2.725	2.472	1.762	nan	3.043	3.785	4.032	9.031	3.977	1.736	6.337	3.603	1.180	0.962	1.838	11.308	0.387	2.433	0.917	3.914
4685	chr2	207985563	208033501	+	0	NA	intron (NM_001270943, intron 1 of 3)	intron (NM_001270943, intron 1 of 3)	-10671	NM_001270944	8609	Hs.59908	NM_003709	ENSG00000118263	KLF7	UKLF	Kruppel like factor 7	protein-coding	2.251	nan	1.559	0.856	4.609	2.427	2.238	1.161	0.141	1.437	0.934	1.566	3.995	0.841	0.085	1.520	2.006	1.091	1.547	1.393	1.314	1.363	0.892	3.197	3.278	3.464	4.340	1.329	1.654	2.656	2.717	0.661	1.452	3.287	3.484	2.229	3.541	0.725	0.392	2.054	1.055	0.979	0.474	2.238	1.566	1.018	0.555	0.265	1.010
2439	chr13	110226012	110231380	+	0	NA	Intergenic	Intergenic	-151925	NR_103846	101409253	Hs.578072	NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA	0.618	nan	0.875	0.361	0.526	0.181	0.119	0.041	0.184	0.059	0.109	0.109	0.275	0.020	0.071	0.581	0.240	0.156	0.214	0.317	0.452	0.585	0.177	0.096	0.093	0.106	0.074	0.724	0.570	0.332	0.192	0.161	0.345	0.118	0.159	0.183	0.270	0.251	0.275	0.052	0.065	0.017	0.118	0.119	0.109	0.035	5.407	0.129	
7768	chr8	81073584	81088326	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	2480	NR_105037	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding	2.971	nan	nan	7.590	7.748	4.150	1.686	0.457	0.142	1.908	1.219	4.925	12.904	0.833	0.112	3.937	5.237	2.443	3.000	8.391	7.525	4.081	1.540	1.248	1.358	2.307	2.774	nan	8.668	2.972	3.236	3.478	7.249	4.658	5.116	1.894	3.369	4.685	1.951	5.364	6.268	1.354	0.562	1.686	4.925	0.419	2.873	5.955	0.505
2896	chr15	60281213	60301541	+	0	NA	Intergenic	Intergenic	-5044	NM_012182	27023	Hs.734475	NM_012182	ENSG00000171956	FOXB1	FKH5|HFKH-5	forkhead box B1	protein-coding	0.674	1.291	nan	1.676	0.494	0.292	1.938	0.089	0.110	0.185	0.114	0.082	9.329	0.080	0.079	0.244	0.127	0.172	0.304	0.653	0.604	nan	0.775	0.078	0.097	0.175	0.311	2.496	5.404	0.649	0.326	0.147	0.166	1.335	1.857	0.212	0.397	1.334	0.770	4.587	0.875	0.278	0.047	1.938	0.082	0.028	0.181	0.014	0.012
5183	chr22	19259979	19285335	+	0	NA	intron (NM_007098, intron 1 of 32)	AluY|SINE|Alu	6582	NM_007098	8218	Hs.368266	NM_001835	ENSG00000070371	CLTCL1	CHC22|CLH22|CLTCL|CLTD	clathrin heavy chain like 1	protein-coding	1.118	nan	1.152	0.555	0.848	0.435	1.174	0.230	0.114	0.401	0.339	0.661	0.667	0.290	0.084	2.332	1.671	0.862	0.882	0.823	0.755	1.466	0.463	3.807	3.900	0.780	1.346	1.382	1.715	1.328	1.102	1.066	1.047	0.830	0.905	0.396	0.584	4.977	2.683	0.120	1.121	0.227	0.327	1.174	0.661	0.279	0.580	0.644	0.151
4884	chr20	21485893	21518698	+	0	NA	Intergenic	CpG	-7631	NM_002509	4821	Hs.516922	NM_002509	ENSG00000125820	NKX2-2	NKX2.2|NKX2B	NK2 homeobox 2	protein-coding	1.253	0.849	nan	0.177	3.936	2.099	0.160	0.113	0.074	0.913	0.453	1.948	1.017	0.062	0.066	0.702	0.951	0.496	0.668	7.188	7.137	3.944	1.288	0.284	0.233	0.669	1.020	0.292	0.774	2.668	2.575	0.183	0.267	1.461	1.834	0.189	0.274	2.559	1.094	0.049	0.073	0.350	0.266	0.160	1.948	0.857	2.227	0.027	0.079
3407	chr17	40393010	40401767	+	0	NA	intron (NM_012448, intron 1 of 18)	AluSc|SINE|Alu	31036	NM_012448	6777	Hs.595276	NM_012448	ENSG00000173757	STAT5B	STAT5	signal transducer and activator of transcription 5B	protein-coding	1.281	1.296	nan	0.200	0.598	0.237	0.359	0.190	0.177	0.611	0.337	0.254	0.487	0.091	0.086	0.347	0.436	0.262	0.359	0.381	nan	0.445	0.185	0.452	0.651	1.215	1.750	0.735	nan	7.342	7.487	0.196	0.348	0.202	0.322	2.325	4.646	1.250	0.755	0.168	0.485	0.077	0.036	0.359	0.254	0.944	0.987	0.079	3.104
7079	chr6	158955385	158982692	+	0	NA	intron (NM_020823, intron 1 of 16)	intron (NM_020823, intron 1 of 16)	11570	NM_020823	57583	Hs.99145	NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding	nan	1.528	2.606	2.978	1.572	0.885	1.318	0.263	0.118	1.494	0.760	2.760	4.134	0.804	0.118	1.528	2.166	0.830	1.165	3.096	nan	4.925	1.411	1.049	1.006	1.075	1.467	2.098	2.633	2.371	2.367	0.745	1.451	3.465	3.639	1.453	nan	1.754	0.997	0.971	1.867	0.965	0.434	1.318	2.760	0.417	2.335	0.576	0.239
7072	chr6	158171311	158201802	+	0	NA	Intergenic	AluY|SINE|Alu	-57647	NM_016224	51429	Hs.191213	NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding	nan	0.791	0.945	0.309	0.391	0.237	1.482	0.459	0.086	0.093	0.084	0.463	0.635	0.101	0.118	2.983	3.318	1.087	2.079	0.725	nan	3.513	1.166	1.201	1.219	0.312	0.489	1.015	1.320	0.666	0.441	0.965	1.395	0.435	0.523	0.539	nan	0.442	0.426	0.357	0.408	0.046	0.175	1.482	0.463	0.080	0.106	0.987	0.289
5900	chr4	53934868	53946021	+	0	NA	intron (NM_152540, intron 5 of 8)	Tigger1|DNA|TcMar-Tigger	211949	NM_023940	65997	Hs.8035	NM_023940	ENSG00000128045	RASL11B	-	RAS like family 11 member B	protein-coding	nan	0.587	0.511	0.434	0.395	0.129	0.092	0.124	0.129	0.378	0.221	0.108	0.254	0.068	0.086	0.532	0.448	0.629	0.615	0.212	0.248	7.073	2.994	0.307	0.228	1.029	1.157	0.478	0.547	0.454	0.333	0.170	0.252	0.551	0.549	0.145	0.440	1.115	1.032	0.030	0.099	0.076	0.064	0.092	0.108		0.054	0.160	0.085
3980	chr19	13793633	13812080	+	0	NA	Intergenic	Charlie24|DNA|hAT-Charlie	-39718	NM_001320565	81576	Hs.24998	NM_030818	ENSG00000104957	CCDC130	-	coiled-coil domain containing 130	protein-coding	1.256	1.910	2.165	0.295	2.890	1.624	1.536	0.381	0.223	0.292	0.250	1.249	1.410	0.060	0.094	0.254	0.099	0.126	0.209	2.486	2.286	2.724	0.882	0.166	0.168	0.402	0.713	1.193	1.213	1.802	1.275	0.092	0.162	1.776	1.748	0.512	1.291	3.347	1.517	4.446	0.951	0.352	0.214	1.536	1.249	0.743	0.395	0.045	0.329
2933	chr15	69425509	69461131	+	0	NA	intron (NR_031680, intron 3 of 4)	intron (NR_031680, intron 3 of 4)	-9616	NM_015554	26035	Hs.183006	NM_015554	ENSG00000138604	GLCE	HSEPI	glucuronic acid epimerase	protein-coding	1.618	1.217	nan	0.298	0.744	0.307	0.564	0.088	0.099	0.207	0.160	0.518	1.276	0.168	0.075	1.025	1.207	0.918	1.110	1.104	1.014	nan	0.493	0.592	0.567	2.300	2.890	0.780	1.213	3.107	3.229	0.793	1.201	1.329	1.802	1.552	4.359	0.563	0.478	0.189	0.470	0.465	0.438	0.564	0.518	0.844	0.304	0.279	1.391
531	chr1	150576899	150589100	+	0	NA	Intergenic	AluSx1|SINE|Alu	18610	NM_207045	2029	Hs.632456	NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding	nan	nan	1.559	0.934	1.183	0.660	2.449	0.912	0.357	2.434	0.814	0.511	1.319	0.102	0.163	0.532	0.543	1.057	2.436	0.649	nan	2.556	0.786	0.578	0.640	0.742	0.911	1.480	1.245	0.332	0.185	0.550	0.765	1.215	2.302	0.438	1.155	1.863	0.922	0.074	0.329	0.229	0.233	2.449	0.511	0.040	5.550	0.136	0.350
2111	chr12	104070739	104083111	+	0	NA	intron (NM_017564, intron 25 of 68)	intron (NM_017564, intron 25 of 68)	95856	NM_017564	55576	Hs.408249	NM_017564	ENSG00000136011	STAB2	FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1	stabilin 2	protein-coding	0.722	1.184	nan	0.612	0.376	0.169	0.258	0.109	0.130	0.828	0.307	0.803	1.068	0.053	0.100	0.322	0.187	0.219	0.250	0.701	0.741	1.836	0.888	0.228	0.304	3.441	3.352	2.423	2.659	0.634	0.461	0.102	0.214	0.269	0.205	0.270	0.491	2.590	1.572	0.797	0.279	0.045	0.053	0.258	0.803	0.103	0.041	0.048	0.245
721	chr1	185269504	185292230	+	0	NA	intron (NM_006469, intron 1 of 14)	L2c|LINE|L2	5594	NM_006469	10625	Hs.497183	NM_006469	ENSG00000116679	IVNS1ABP	FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP	influenza virus NS1A binding protein	protein-coding	nan	nan	1.876	1.979	2.130	1.206	1.827	1.366	0.250	1.452	0.741	1.824	3.363	1.349	0.146	2.658	3.340	5.652	9.164	4.547	nan	2.523	1.286	nan	5.258	1.908	2.356	2.772	4.041	2.252	2.361	3.152	5.556	1.956	1.638	2.120	nan	1.574	1.039	1.078	2.509	0.410	1.204	1.827	1.824	0.475	0.810	1.563	0.671
1897	chr12	31224483	31234447	+	0	NA	intron (NM_152438, intron 1 of 26)	MIRb|SINE|MIR	-2684	NR_038927	100506660	Hs.586774	NR_038927	ENSG00000245614	DDX11-AS1	CONCR	DDX11 antisense RNA 1	ncRNA	2.870	nan	3.682	4.888	2.574	1.209	2.288	0.912	0.033	1.739	1.150	2.672	5.365	1.555	0.101	3.179	2.958	3.005	4.326	7.747	7.128	5.487	3.192	6.340	7.147	2.325	2.932	3.905	6.207	3.038	3.316	1.659	3.083	9.534	11.768	2.505	3.127	2.338	1.328	3.321	2.665	3.737	1.617	2.288	2.672	0.652	2.744	1.240	1.111
3482	chr17	57693664	57705339	+	0	NA	intron (NM_001288653, intron 1 of 31)	intron (NM_001288653, intron 1 of 31)	2451	NM_001288653	1213	Hs.491351	NM_004859	ENSG00000141367	CLTC	CHC|CHC17|CLH-17|CLTCL2|Hc	clathrin heavy chain	protein-coding	3.825	3.640	3.692	3.966	4.962	2.870	2.856	2.933	0.384	2.537	1.153	3.139	6.655	4.086	0.186	5.693	5.001	4.594	6.205	5.747	5.277	6.385	3.931	nan	14.453	3.242	3.848	nan	nan	6.917	6.167	3.134	5.709	5.421	7.406	5.457	5.814	2.824	1.559	1.896	2.693	1.232	1.734	2.856	3.139	0.841	1.906	1.930	1.685
669	chr1	174760111	174782470	+	0	NA	intron (NM_001330989, intron 1 of 9)	intron (NM_001330989, intron 1 of 9)	2255	NM_001243765	9910	Hs.585378	NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding	nan	nan	nan	0.292	0.481	0.237	0.886	0.558	0.194	0.470	0.449	0.938	1.793	0.068	0.118	0.763	0.980	1.053	1.570	nan	1.483	1.434	0.530	0.604	0.621	0.922	1.311	1.027	1.503	1.302	1.073	0.525	0.854	0.909	0.837	1.795	nan	1.404	0.891	0.148	1.960	0.235	0.077	0.886	0.938	0.247	0.186	0.264	1.263
420	chr1	100034574	100040902	+	0	NA	Intergenic	Intergenic	-73693	NM_017734	54873	Hs.483993	NM_017734	ENSG00000099260	PALMD	C1orf11|PALML	palmdelphin	protein-coding	1.072	nan	nan	0.086	0.191	0.137	0.109	0.225	0.127	0.025	0.037	0.170	0.444	0.093	0.115	1.028	0.594	7.532	4.821	0.510	nan	0.134	0.094	0.946	1.251	1.028	1.327	nan	nan	0.495	0.331	0.395	0.408	0.191	0.095	0.729	nan	0.572	0.597	1.034	0.147	0.030	0.025	0.109	0.170	0.093	0.016	0.081	0.895
5682	chr3	174253797	174270064	+	0	NA	Intergenic	HAL1|LINE|L1	-315181	NM_207015	254827	Hs.565848	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase like 2	protein-coding	1.137	1.090	0.893	0.155	0.603	0.306	0.126	0.251	0.089	1.795	1.247	0.176	0.244	0.033	0.092	0.502	0.458	0.269	0.313	0.463	0.488	3.792	1.550	0.389	0.360	0.969	1.356	0.408	0.345	0.763	0.323	0.200	0.163	3.873	3.502	0.285	0.544	1.474	0.863	0.060	0.067	0.765	0.073	0.126	0.176	0.036	0.118	0.061	0.113
1348	chr11	22683371	22695026	+	0	NA	promoter-TSS (NM_177553)	promoter-TSS (NM_177553)	-456	NM_177553	2620	Hs.711297	NM_005256	ENSG00000148935	GAS2	-	growth arrest specific 2	protein-coding	1.097	0.982	0.775	0.198	0.154	0.055	0.635	0.615	0.125	0.255	0.170	0.215	0.933	0.074	0.077	0.578	0.539	0.179	0.229	1.353	1.150	0.182	0.089	0.300	0.355	5.906	6.222	0.289	0.370	1.430	1.695	0.449	0.661	3.898	3.724	0.184	0.269	0.880	0.736	0.671	0.390	1.755	0.136	0.635	0.215	1.352	0.217	0.247	0.105
5656	chr3	170994419	171010549	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	175713	NM_001161564	23043	Hs.34024	NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding	1.022	1.378	0.780	0.185	0.373	0.229	0.227	2.560	0.255	0.156	0.219	0.030	0.231	0.054	0.100	0.304	0.206	0.258	0.386	0.297	0.347	0.252	0.150	0.257	0.239	3.118	3.759	0.694	1.038	0.794	0.498	0.165	0.294	0.062	0.095	0.238	0.334	0.445	0.547	0.099	0.131	0.018	0.197	0.227	0.030	0.067	0.013	0.037	0.153
8412	chrX	135396679	135411935	+	0	NA	intron (NM_153834, intron 4 of 25)	intron (NM_153834, intron 4 of 25)	21185	NM_153834	139378	Hs.381354	NM_153834	ENSG00000156920	ADGRG4	GPR112|PGR17|RP1-299I16	adhesion G protein-coupled receptor G4	protein-coding	1.140	0.702	0.783	0.084	0.675	0.390	0.184	0.067	0.042	0.083	0.122	0.070	0.247	0.007	0.051	0.221	0.239	0.176	0.209	0.168	0.175	0.925	0.286	0.114	0.151	3.940	4.527	0.103	0.127	2.543	2.334	0.099	0.166	0.600	0.672	0.286	0.853	0.465	0.367	0.039	0.047	0.105	0.032	0.184	0.070	0.312	0.020	0.054	0.364
7147	chr7	7720546	7770730	+	0	NA	intron (NM_002947, intron 2 of 7)	intron (NM_002947, intron 2 of 7)	12600	NM_002947	6119	Hs.487540	NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding	1.753	1.315	1.833	0.490	3.007	1.621	0.260	0.379	0.089	0.936	0.450	2.348	nan	0.109	0.157	0.662	0.479	0.467	nan	1.926	2.293	nan	1.029	0.630	0.610	4.604	4.953	nan	1.012	1.328	0.768	0.261	0.394	2.518	2.690	1.664	4.493	1.018	0.728	1.104	0.498	0.444	0.212	0.260	2.348	0.097	0.403	0.120	1.690
1137	chr10	72586611	72596685	+	0	NA	intron (NM_003901, intron 2 of 14)	MER21A|LTR|ERVL	15944	NM_003901	8879	Hs.499984	NM_003901	ENSG00000166224	SGPL1	S1PL|SPL	sphingosine-1-phosphate lyase 1	protein-coding	0.753	nan	0.752	0.161	0.408	0.179	0.075	0.200	0.049	0.139	0.049	0.259	0.802	0.070	0.092	0.705	0.778	5.574	7.904	0.448	0.622	0.392	0.193	0.303	0.365	0.312	0.492	1.153	nan	0.226	0.138	0.259	0.451	0.091	0.090	0.246	nan	0.903	0.468	0.198	0.226	0.010	0.142	0.075	0.259		0.061	0.124	0.135
7807	chr8	97504739	97509627	+	0	NA	intron (NM_002998, intron 1 of 4)	CpG	1301	NM_002998	6383	Hs.1501	NM_002998	ENSG00000169439	SDC2	CD362|HSPG|HSPG1|SYND2	syndecan 2	protein-coding	8.429	2.781	9.515	3.133	1.542	1.083	1.423	4.501	0.461	0.221	0.048	4.874	18.433	5.121	0.084	0.441	0.307	4.896	nan	18.877	13.910	7.576	1.894	2.753	2.755	0.436	0.998	5.281	6.208	5.177	6.601	0.501	1.214	5.917	4.730	3.306	4.511	0.640	0.753	0.113	6.802	1.460	1.459	1.423	4.874	0.876	0.040	0.302	1.847
3504	chr17	62499092	62505028	+	0	NA	promoter-TSS (NM_001320597)	promoter-TSS (NM_001320597)	14	NM_001320597	1655	Hs.279806	NM_004396	ENSG00000108654	DDX5	G17P1|HLR1|HUMP68|p68	DEAD-box helicase 5	protein-coding	7.494	nan	5.106	6.987	8.212	4.819	4.431	4.608	0.517	3.971	1.722	5.670	14.023	5.956	0.167	9.537	10.470	8.160	10.955	12.071	10.897	8.452	5.154	24.737	25.025	4.246	nan	9.935	14.405	11.833	13.731	4.470	8.124	7.483	7.191	7.221	7.312	3.611	2.031	2.035	4.407	1.522	3.169	4.431	5.670	1.213	3.046	2.391	2.212
6356	chr5	88165204	88180613	+	0	NA	intron (NM_001193347, intron 2 of 11)	UCON20|Unknown|Unknown	-6239	NR_136218	101929423	Hs.130138	NR_104031	ENSG00000248309	MEF2C-AS1	-	MEF2C antisense RNA 1	ncRNA	0.618	1.022	0.468	0.289	0.333	0.269	0.049	0.981	0.084	0.529	0.396	0.124	2.426	0.278	0.113	0.301	0.231	0.529	0.891	0.691	0.474	0.958	0.322	2.283	2.442	3.028	3.604	0.455	0.516	0.789	0.688	0.532	1.246	0.345	0.245	0.257	nan	0.819	0.463	0.021	0.276	0.031		0.049	0.124		1.105	1.227	0.129
3381	chr17	36808382	36819999	+	0	NA	Intergenic	Intergenic	16997	NM_001130677	100170841	Hs.445574	NM_001130677	ENSG00000273604	EPOP	C17orf96|PRR28	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	nan	1.051	0.816	0.167	0.736	0.427	0.187	0.129	0.159	0.210	0.239	0.134	0.425	0.189	0.098	5.456	8.179	5.074	2.198	nan	0.696	0.643	0.274	6.716	7.311	0.314	0.692	0.807	0.889	nan	1.431	1.684	2.627	0.144	0.240	0.476	0.958	0.710	0.510	0.274	0.228	0.049	0.027	0.187	0.134	0.175	0.205	1.945	0.200
852	chr1	212683685	212704465	+	0	NA	Intergenic	MIRc|SINE|MIR	-24961	NR_125985	101929565		NR_125985	ENSG00000228067	LINC01740	-	long intergenic non-protein coding RNA 1740	ncRNA	1.738	1.758	2.357	0.282	0.553	0.387	0.402	0.248	0.070	0.293	0.201	0.270	nan	0.062	0.132	0.430	0.333	0.622	1.272	0.607	0.648	nan	0.279	0.375	0.503	0.341	nan	0.423	0.464	2.110	2.335	0.135	0.166	0.410	0.749	1.574	5.140	0.564	0.588	0.302	0.043	0.028	0.118	0.402	0.270	0.444	0.123	0.033	1.768
8230	chr9	107746829	107759009	+	0	NA	Intergenic	Intergenic	-62392	NM_005502	19	Hs.659274	NM_005502	ENSG00000165029	ABCA1	ABC-1|ABC1|CERP|HDLDT1|TGD	ATP binding cassette subfamily A member 1	protein-coding	1.242	0.910	1.296	1.365	0.707	0.394	0.497	0.981	0.211	0.250	0.215	0.295	4.162	1.354	0.104	0.317	0.526	0.331	0.492	1.239	1.057	0.466	0.145	1.135	1.184	0.360	0.513	4.845	nan	2.617	3.307	0.558	0.971	1.144	0.570	0.632	1.533	nan	0.486	0.516	0.802	0.511	0.596	0.497	0.295	0.499	0.966	0.398	0.284
7317	chr7	70158284	70176238	+	0	NA	intron (NM_015570, intron 6 of 18)	intron (NM_015570, intron 6 of 18)	-430262	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding	nan	2.360	2.791	0.107	2.048	1.406	2.360	1.572	0.250	1.489	0.720	3.209	3.735	0.603	0.162	2.500	2.258	1.755	nan	4.796	4.563	3.598	1.041	1.505	1.278	1.398	nan	1.607	nan	2.991	3.707	1.620	3.681	3.539	4.799	1.893	2.075	2.222	1.474	0.848	1.911	1.331	1.825	2.360	3.209	0.638	0.206	0.922	0.358
4341	chr2	50973621	50984628	+	0	NA	intron (NM_001135659, intron 5 of 23)	intron (NM_001135659, intron 5 of 23)	-55724	NR_130470	103504737		NR_130470	ENSG00000216191	MIR8485	hsa-mir-8485	microRNA 8485	ncRNA	1.399	nan	1.546	0.159	0.593	0.322	0.328	0.141	0.117	0.315	0.327	0.486	0.347	0.040	0.131	0.417	0.282	1.713	0.319	0.420	0.639	0.418	0.209	0.317	0.330	3.830	4.961	0.604	0.565	1.176	0.573	0.157	0.228	1.053	1.121	0.375	0.835	0.445	0.327	0.076	0.348	0.234	0.036	0.328	0.486	0.596	0.037	0.045	0.134
5721	chr3	181324158	181369386	+	0	NA	intron (NR_075090, intron 2 of 2)	MIRb|SINE|MIR	18650	NR_004053	347689	Hs.654932	NR_004053		SOX2-OT	NCRNA00043|SOX2OT	SOX2 overlapping transcript	ncRNA	0.828	1.159	0.657	0.210	0.607	0.259	0.195	0.114	0.175	0.388	0.323	0.166	0.468	3.340	0.128	0.262	0.193	0.152	0.296	0.521	0.632	3.298	1.543	0.169	0.132	0.198	0.378	0.526	0.577	0.778	0.336	0.100	0.152	0.196	0.222	0.146	0.249	0.656	0.575	0.027	0.102	0.033	0.244	0.195	0.166	0.013	0.016	0.044	0.070
5732	chr3	182149748	182159610	+	0	NA	Intergenic	Intergenic	49471	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA	1.032	1.752	0.864	4.295	0.637	0.405	0.297	0.159	0.176	0.599	0.294	0.535	0.919	0.067	0.108	0.325	0.286	0.173	0.220	0.406	0.637	5.286	2.094	0.169	0.194	0.533	0.686	1.376	2.346	0.652	0.250	0.098	0.225	1.466	1.119	0.163	0.288	0.990	0.546	0.062	0.376	0.204	6.341	0.297	0.535	0.069	0.381	0.131	0.075
6288	chr5	59730014	59749596	+	0	NA	intron (NM_001165899, intron 1 of 16)	intron (NM_001165899, intron 1 of 16)	-43735	NR_024617	25859	Hs.146312	NM_001039499	ENSG00000152931	PART1	NCRNA00206	prostate androgen-regulated transcript 1 (non-protein coding)	ncRNA	nan	nan	0.684	0.041	0.244	0.074	0.125	0.118	0.058	0.048	0.085	0.024	0.324	0.055	0.145	0.225	0.096	0.232	0.242	0.192	0.247	nan	0.101	0.126	0.103	4.844	5.280	0.285	0.301	nan	0.265	0.077	0.142	0.073	0.104	0.165	0.395	0.133	0.259	1.312	0.081	0.005	0.307	0.125	0.024	0.020	0.476	0.025	0.101
1475	chr11	66023979	66037444	+	0	NA	intron (NM_001318734, intron 5 of 15)	intron (NM_001318734, intron 5 of 15)	-5345	NM_030981	81876	Hs.300816	NM_030981	ENSG00000174903	RAB1B	-	RAB1B, member RAS oncogene family	protein-coding	nan	1.463	1.228	1.922	2.495	1.565	2.074	1.180	0.213	0.885	0.478	1.947	5.216	2.719	0.127	2.506	3.424	2.445	3.542	4.712	5.002	2.887	1.401	4.061	4.252	1.984	2.700	3.199	4.439	2.958	2.539	1.476	2.741	2.048	2.179	1.514	2.226	1.680	0.800	1.400	1.523	0.385	1.164	2.074	1.947	1.069	2.260	0.722	0.624
7690	chr8	59852162	59876623	+	0	NA	intron (NM_014729, intron 2 of 8)	intron (NM_014729, intron 2 of 8)	167375	NM_014729	9760	Hs.491805	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding	1.779	nan	1.257	0.451	2.496	1.447	0.289	0.218	0.072	0.436	0.298	0.788	0.812	0.063	0.073	0.295	0.215	0.239	0.346	1.206	1.265	0.962	0.357	0.079	0.059	1.852	nan	0.552	0.642	0.437	0.193	0.087	0.113	2.138	2.918	0.153	0.273	2.728	1.210	0.277	0.337	0.657	1.074	0.289	0.788	0.067	0.311	0.032	0.070
2968	chr15	80405776	80414971	+	0	NA	intron (NM_001242917, intron 2 of 6)	intron (NM_001242917, intron 2 of 6)	19615	NM_001242919	54469	Hs.596679	NM_019006	ENSG00000086666	ZFAND6	AWP1|ZA20D3|ZFAND5B	zinc finger AN1-type containing 6	protein-coding	0.785	nan	0.891	0.143	0.283	0.087	0.153	0.168	0.069	0.118	0.131	0.092	0.439	0.083	0.121	0.585	0.778	0.458	0.435	0.266	0.333	0.363	0.147	0.398	0.428	4.752	4.431	0.360	0.348	1.449	1.107	0.390	0.665	0.055	0.094	0.329	0.607	0.497	0.370	0.036	0.124	0.010	0.017	0.153	0.092	0.339	0.154	0.303	0.067
5448	chr3	107609561	107619367	+	0	NA	intron (NR_015394, intron 1 of 2)	L2c|LINE|L2	12412	NR_015394	285205	Hs.134882	NR_015394	ENSG00000240423	LINC00636	-	long intergenic non-protein coding RNA 636	ncRNA	nan	nan	0.807	0.099	0.550	0.410	0.365	0.222	0.182	0.352	0.262	0.536	0.208	0.011	0.083	0.308	0.232	0.665	2.399	0.805	0.860	8.171	1.962	0.227	0.251	0.360	0.466	0.190	0.136	0.630	0.280	0.177	0.210	0.814	0.706	0.317	0.642	0.840	0.723	0.051	0.066	0.263	0.583	0.365	0.536	0.075	0.083	0.060	0.063
2456	chr13	112503940	112527467	+	0	NA	Intergenic	Intergenic	-31989	NR_046992	101928616	Hs.528450	NR_046992		LINC00354	-	long intergenic non-protein coding RNA 354	ncRNA	0.600	nan	0.584	2.762	3.887	2.005	5.573	0.054	0.068	0.693	0.296	5.997	2.937	0.032	0.063	0.444	0.256	0.136	0.173	5.710	6.279	1.919	0.771	0.049	0.060	0.022	0.060	4.858	6.113	0.187	0.067	0.385	0.389	1.055	0.725	0.103	0.164	0.673	0.407	3.076	2.982	0.218	0.334	5.573	5.997	0.004	0.082	0.100	0.015
7291	chr7	55753798	55769967	+	0	NA	intron (NR_003949, intron 2 of 5)	L1MB3|LINE|L1	-4729	NR_027339	360132	Hs.446691	NM_182827	ENSG00000176826	FKBP9P1	FKBP9L	FK506 binding protein 9 pseudogene 1	pseudo	nan	0.922	0.924	0.854	1.318	0.580	0.505	0.221	0.170	0.483	0.339	0.630	1.695	0.107	0.141	3.394	5.625	0.792	0.886	4.287	2.612	5.773	2.307	0.712	0.613	0.407	0.735	2.903	2.420	0.297	0.116	0.961	0.959	0.795	0.794	0.193	0.292	1.129	0.900	0.248	0.489	0.148	0.046	0.505	0.630	0.054	4.424	0.269	0.084
1192	chr10	102755401	102773200	+	0	NA	intron (NM_032429, intron 3 of 4)	AluSz|SINE|Alu	2046	NM_001318101	84445	Hs.523221	NM_032429	ENSG00000107816	LZTS2	LAPSER1	leucine zipper tumor suppressor 2	protein-coding	nan	nan	3.960	1.286	2.110	1.144	1.050	2.049	0.200	0.866	0.415	2.501	3.494	2.292	0.088	4.359	4.965	4.491	5.523	3.240	2.921	4.001	1.372	3.299	3.263	1.470	nan	4.288	6.040	1.177	1.295	1.303	2.530	1.428	1.006	1.873	nan	1.144	0.679	1.833	1.648	0.391	0.666	1.050	2.501	0.328	1.831	0.982	1.223
3017	chr16	1337951	1362333	+	0	NA	Intergenic	Intergenic	-9012	NM_194261	7329	Hs.302903	NM_003345	ENSG00000103275	UBE2I	C358B7.1|P18|UBC9	ubiquitin conjugating enzyme E2 I	protein-coding	1.432	nan	1.451	2.176	1.765	0.867	1.855	0.502	0.093	1.014	0.428	2.803	2.877	0.671	0.084	1.368	1.353	0.964	1.209	2.849	2.909	nan	2.044	2.840	2.649	0.665	nan	3.977	5.351	1.968	1.767	1.327	1.825	2.138	2.092	1.442	0.916	1.609	0.763	1.626	5.035	0.549	0.344	1.855	2.803	0.343	0.594	0.408	0.456
1095	chr10	34806423	34819449	+	0	NA	intron (NM_001184785, intron 2 of 24)	intron (NM_001184785, intron 2 of 24)	291317	NM_001184791	56288	Hs.131489	NM_019619	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding	0.763	1.322	0.781	0.048	2.840	1.709	0.265	4.721	0.250	0.507	0.337	0.477	0.274	0.208	0.078	0.428	0.332	1.949	nan	0.415	0.473	4.562	1.282	2.595	2.468	0.461	0.914	0.692	0.959	0.204	0.120	0.256	0.478	0.582	1.077	0.304	0.601	0.536	0.356	0.085	0.080	0.109	0.104	0.265	0.477		0.296	0.235	0.124
2975	chr15	86426700	86436110	+	0	NA	Intergenic	Intergenic	62539	NR_049805	100847084		NR_049805	ENSG00000264406	MIR548AP	-	microRNA 548ap	ncRNA	1.270	nan	1.502	0.037	0.224		0.504	0.040	0.017	0.017	0.093	0.114	0.485	0.023	0.079	0.456	0.248	0.222	0.216	0.408	0.371	0.072	0.064	0.084	0.059	4.403	5.593	0.133	0.153	2.772	3.547	0.303	0.398	0.013	0.062	0.268	0.754	0.231	0.313	0.012	0.138	0.010	0.060	0.504	0.114	1.463	0.044	0.063	0.273
6734	chr6	35498425	35516276	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-26635	NM_003322	7287	Hs.485208	NM_003322	ENSG00000112041	TULP1	LCA15|RP14|TUBL1	tubby like protein 1	protein-coding	nan	0.955	nan	0.183	0.203	0.143	0.231	0.139	0.186	0.061	0.112	0.160	0.312	0.091	0.144	0.452	0.469	0.245	nan	nan	0.376	1.036	0.380	0.385	0.396	0.639	1.062	0.640	0.972	1.044	0.711	0.257	0.310	0.089	0.105	2.106	7.112	0.336	0.406	0.301	0.133	0.027	0.223	0.231	0.160	0.218	0.034	0.055	3.215
1883	chr12	27930635	27939885	+	0	NA	intron (NM_020782, intron 1 of 2)	intron (NM_020782, intron 1 of 2)	2073	NM_020782	57542	Hs.505104	NM_020782	ENSG00000087448	KLHL42	Ctb9|KLHDC5	kelch like family member 42	protein-coding	nan	nan	nan	3.597	1.971	1.110	2.832	0.650	0.117	1.326	0.780	2.843	3.359	2.250	0.160	1.971	1.520	2.371	4.141	6.499	6.284	7.275	2.902	4.282	4.513	2.161	2.844	3.155	4.731	3.672	4.258	1.900	4.159	1.716	1.594	2.096	1.870	1.743	1.079	1.695	1.141	0.308	2.979	2.832	2.843	6.331	2.731	0.869	0.802
4691	chr2	209352673	209368592	+	0	NA	Intergenic	Intergenic	-46735	NR_136588	101927960	Hs.159960	NR_136588		LOC101927960	-	uncharacterized LOC101927960	ncRNA	0.849	nan	0.777	4.680	2.862	1.687	0.201	0.095	0.051	0.401	0.197	0.700	1.507	0.048	0.089	0.349	0.207	0.780	0.491	1.570	1.632	0.257	0.098	0.419	0.501	0.359	0.554	4.399	3.836	0.584	0.326	0.226	0.400	0.755	0.405	0.373	0.524	1.008	0.660	0.028	0.526	0.108	0.468	0.201	0.700	0.012	0.437	0.067	0.110
6618	chr6	13144582	13149487	+	0	NA	intron (NM_001322314, intron 2 of 12)	intron (NM_001322314, intron 2 of 12)	133146	NM_001322314	221692	Hs.436996	NM_030948	ENSG00000112137	PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding	1.078	nan	0.631	0.124	0.354	0.228	0.218	0.154	0.130	0.142	0.133	0.098	0.132	0.022	0.087	1.097	0.590	10.198	5.280	0.392	0.397	0.519	0.170	0.247	0.281	1.004	1.326	0.057	0.079	0.554	0.300	0.237	0.409	0.116	0.148	0.396	0.304	1.979	0.832	0.056	0.091	0.038	0.437	0.218	0.098		0.042	0.020	0.025
1846	chr12	14535745	14572410	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	16079	NM_181352	55729	Hs.504856	NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding	1.125	0.815	1.008	1.038	0.605	0.332	0.754	0.211	0.062	0.581	0.589	3.172	1.495	0.442	0.145	0.615	0.796	4.807	5.611	nan	1.542	1.577	0.610	5.397	5.474	1.299	1.576	1.184	1.500	1.822	1.744	1.238	2.093	0.742	0.875	1.146	1.752	0.116	0.079	1.745	1.032	0.140	0.568	0.754	3.172	0.164	0.291	3.075	0.125
4832	chr20	6512088	6520019	+	0	NA	Intergenic	MIR3|SINE|MIR	108674	NR_109953	101929244	Hs.542488	NR_109953	ENSG00000229876	CASC20	-	cancer susceptibility candidate 20 (non-protein coding)	ncRNA	0.803	1.298	0.654	0.188	0.317	0.162	0.178	0.237	0.102	0.140	0.114	0.151	0.291	0.031	0.123	0.711	0.277	6.289	8.175	0.290	0.344	1.318	0.484	0.709	0.663	0.270	0.503	2.075	2.453	0.666	0.248	0.114	0.216	0.261	0.454	0.579	1.371	0.741	0.632	0.014	0.045	0.049	0.055	0.178	0.151	0.037	0.206	0.100	0.082
133	chr1	22643264	22652286	+	0	NA	Intergenic	Intergenic	55043	NR_039613	100616433		NR_039613	ENSG00000266564	MIR4418	-	microRNA 4418	ncRNA	1.326	0.996	nan	0.265	1.009	0.426	5.874	0.055	0.036	0.585	0.772	0.292	1.596	0.056	0.088	6.033	7.069	0.189	0.199	1.861	1.790	1.828	1.576	0.384	0.341	1.077	1.461	0.616	0.938	0.896	0.860	0.560	0.818	2.261	2.248	0.745	1.369	0.752	0.800	0.111	0.525	1.065	2.667	5.874	0.292	0.483	0.136	0.704	0.248
2515	chr14	29646012	29655736	+	0	NA	Intergenic	Intergenic	-395881	NR_135255	105370424	Hs.375809	NR_135255	ENSG00000257056	LOC105370424	-	uncharacterized LOC105370424	ncRNA	1.127	0.855	0.732	0.245	0.348	0.099	0.224	0.240	0.115	0.129	0.127	0.185	0.343	0.056	0.164	0.242	0.123	0.207	0.186	0.377	0.460	0.500	0.155	0.126	0.097	7.910	8.696	0.344	0.340	0.672	0.280	0.074	0.163	0.150	0.169	0.223	0.466	0.595	0.531	0.038	0.128	0.065	0.123	0.224	0.185	0.030	0.073	0.021	0.150
5017	chr20	56490852	56519591	+	0	NA	Intergenic	Intergenic	34771	NR_039757	100616353		NR_039757	ENSG00000263453	MIR4532	mir-4532	microRNA 4532	ncRNA	1.364	2.122	1.179	0.046	0.548	0.390	0.067	0.100	0.096	1.023	0.311	0.083	0.492	0.072	0.088	1.004	nan	0.326	0.731	0.187	0.251	5.026	1.234	0.099	0.143	0.293	0.472	0.113	0.149	0.554	0.470	0.278	0.421	1.181	1.288	0.454	0.943	2.569	1.459	0.039	0.067	0.431	0.016	0.067	0.083	0.305	0.155	0.055	0.280
2605	chr14	56839587	56849565	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-136473	NR_135241	101927690	Hs.385477	NR_135241	ENSG00000258803	LOC101927690	-	uncharacterized LOC101927690	ncRNA	2.765	nan	2.326	0.185	0.298	0.080	0.346	0.116	0.082	0.047	0.109	0.180	0.284	0.022	0.081	0.651	0.473	0.241	0.303	0.359	0.415	0.250	0.096	0.812	0.854	0.117	0.213	0.287	0.284	0.682	0.397	0.126	0.263	0.105	0.147	2.621	10.148	nan	0.574	0.066	0.144	0.029	0.088	0.346	0.180	0.097	0.061	0.059	2.001
56	chr1	8075024	8088904	+	0	NA	intron (NM_018948, intron 1 of 3)	intron (NM_018948, intron 1 of 3)	4429	NM_018948	54206	Hs.605445	NM_018948	ENSG00000116285	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	1.887	nan	1.897	2.508	1.058	0.623	0.508	2.842	0.291	0.423	0.235	0.720	6.333	1.473	0.113	1.074	1.643	1.422	3.110	2.590	2.828	1.491	0.496	1.022	1.043	1.647	nan	5.546	6.991	nan	0.855	0.824	1.799	0.819	1.013	0.607	0.897	1.535	0.904	0.970	1.409	0.179	0.332	0.508	0.720	0.355	0.659	0.433	0.144
3977	chr19	13259382	13285339	+	0	NA	Intergenic	AluSg|SINE|Alu	11078	NM_004907	9592	Hs.501629	NM_004907	ENSG00000160888	IER2	ETR101	immediate early response 2	protein-coding	6.035	3.856	4.048	2.412	4.521	2.166	2.279	3.265	0.828	1.583	0.776	3.676	2.531	4.264	0.146	4.105	4.536	2.999	5.759	2.988	2.585	7.209	3.637	4.532	4.796	2.190	2.752	6.224	7.128	4.887	4.668	1.654	3.308	5.255	4.525	3.992	7.110	2.765	1.669	5.147	1.892	1.171	1.621	2.279	3.676	1.165	2.627	2.049	2.216
7567	chr7	158279191	158294227	+	0	NA	intron (NM_130843, intron 1 of 21)	intron (NM_130843, intron 1 of 21)	38796	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA	0.743	0.430	nan	0.579	1.308	0.623	3.070	0.070	0.085	0.417	0.421	1.892	1.250	0.063	0.134	0.333	0.390	0.110	0.181	2.109	2.084	1.888	0.548	0.066	0.061	0.326	0.447	1.253	1.467	0.519	0.325	0.465	0.459	0.539	0.777	0.096	0.181	1.402	0.708	0.394	0.763	0.110	0.160	3.070	1.892	0.161	0.061	0.079	
6623	chr6	15087090	15092240	+	0	NA	Intergenic	Intergenic	-156541	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding	1.956	nan	2.867	0.441	0.660	0.341	0.435	0.160	0.156	0.091	0.142	0.812	0.274	0.022	0.083	0.506	0.268	0.287	0.693	0.879	0.917	1.364	0.393	0.363	0.355	0.699	1.027	8.047	7.129	0.719	0.539	0.174	0.568	2.722	2.292	0.599	1.996	1.523	1.004	3.752	4.088	0.517	6.029	0.435	0.812	0.076	0.059	0.172	0.311
4282	chr2	29926469	29951179	+	0	NA	intron (NM_004304, intron 2 of 28)	intron (NM_004304, intron 2 of 28)	205653	NM_004304	238	Hs.654469	NM_004304	ENSG00000171094	ALK	CD246|NBLST3	anaplastic lymphoma receptor tyrosine kinase	protein-coding	1.346	0.762	1.232	0.064	0.137	0.058	0.212	0.061	0.083	0.057	0.092	0.063	0.581	0.061	0.091	0.811	1.084	0.659	0.527	0.249	0.264	0.128	0.058	0.180	0.228	0.609	0.978	0.269	nan	0.682	0.536	0.305	0.380	0.202	0.306	1.042	3.656	0.188	0.265	0.133	0.076	0.061	0.199	0.212	0.063	0.039	0.025	0.368	2.971
6819	chr6	55732495	55743157	+	0	NA	intron (NM_021073, intron 1 of 6)	intron (NM_021073, intron 1 of 6)	2562	NM_001329754	653	Hs.296648	NM_021073	ENSG00000112175	BMP5	-	bone morphogenetic protein 5	protein-coding	0.937	3.764	nan	0.075	0.160	0.182	3.205	0.134	0.030	0.029	0.107	0.064	0.309	0.163	0.148	8.121	9.665	0.970	3.863	0.225	0.295	0.077	0.057	0.348	0.315	0.564	0.674	2.669	4.103	0.548	0.226	2.462	5.866	0.513	0.227	0.294	0.635	0.599	0.587	0.036	1.675	0.036	0.081	3.205	0.064	0.018	1.025	2.179	0.231
5966	chr4	90720093	90725873	+	0	NA	intron (NM_000345, intron 4 of 5)	intron (NM_000345, intron 4 of 5)	-34569	NR_045481	644248	Hs.553954	NR_045481	ENSG00000247775	SNCA-AS1	-	SNCA antisense RNA 1	ncRNA	0.745	0.736	0.650	0.210	0.384	0.222	0.145	0.678		0.056	0.125	0.041	0.212	0.039	0.085	1.444	1.634	9.374	6.196	0.303	0.294	0.156	0.067	4.008	3.667	0.466	0.813	0.404	0.348	0.361	0.177	1.332	2.289	0.138	0.099	0.183	0.552	0.371	0.420	0.059	0.140	0.066	0.055	0.145	0.041	0.033	0.082	0.718	0.064
5552	chr3	134068484	134101694	+	0	NA	intron (NM_001278685, intron 4 of 9)	intron (NM_001278685, intron 4 of 9)	1615	NR_106885	102466744		NR_106885	ENSG00000277723	MIR6827	hsa-mir-6827	microRNA 6827	ncRNA	1.416	nan	nan	0.183	0.545	0.250	0.459	2.482	0.359	0.152	0.195	1.240	0.683	1.449	0.089	0.832	1.357	3.191	6.183	2.538	2.711	0.917	0.300	0.508	0.519	0.881	1.402	0.635	0.843	nan	1.009	0.431	0.615	0.061	0.088	0.908	1.610	0.477	0.453	0.230	0.118	0.012	0.540	0.459	1.240	0.161	0.086	0.156	0.435
4038	chr19	36704481	36708053	+	0	NA	promoter-TSS (NM_152477)	promoter-TSS (NM_152477)	-281	NM_001042474	147929	Hs.596338	NM_152477	ENSG00000196357	ZNF565	-	zinc finger protein 565	protein-coding	9.106	2.507	4.808	10.974	6.329	3.806	3.726	3.170	0.272	3.066	0.934	4.910	20.728	9.299	0.240	7.000	5.810	7.226	9.222	10.378	10.104	11.734	4.713	25.076	27.171	5.948	8.183	9.414	14.182	nan	12.595	5.476	8.920	8.651	9.024	9.282	9.393	6.984	3.819	3.619	4.776	1.282	2.205	3.726	4.910	1.847	2.370	2.508	3.074
2225	chr12	133463380	133466076	+	0	NA	promoter-TSS (NM_001161344)	promoter-TSS (NM_001161344)	300	NR_110919	101928530	Hs.560003	NR_110919	ENSG00000236617	LOC101928530	-	uncharacterized LOC101928530	ncRNA	3.432	3.048	2.540	3.889	2.025	1.254	2.513	1.729	0.299	1.689	0.982	3.535	7.050	3.892	0.044	4.618	4.104	2.347	3.146	4.622	3.910	6.325	3.164	6.174	7.321	1.830	3.057	nan	8.110	2.463	2.687	4.745	5.853	4.763	5.011	2.457	2.342	2.953	1.674	4.067	3.799	0.912	15.430	2.513	3.535	0.683	4.076	1.210	0.279
6087	chr4	182206525	182253902	+	0	NA	Intergenic	Intergenic	-149911	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA	nan	0.775	nan	0.048	2.701	1.264	0.194	0.049	0.067	0.586	0.318	0.169	0.139	0.090	0.085	0.223	0.164	0.300	0.304	0.477	0.582	4.338	1.783	0.158	0.165	0.093	0.148	0.741	0.673	0.342	0.182	0.138	0.193	2.288	2.899	0.096	0.170	0.697	0.389	0.856	1.950	0.738	0.116	0.194	0.169	0.012	0.140	0.056	0.021
30	chr1	2456386	2481270	+	0	NA	Intergenic	Intergenic	-7144	NM_001010926	388585	Hs.57971	NM_001010926	ENSG00000197921	HES5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	1.817	nan	1.756	1.704	0.988	0.575	0.617	0.467	0.169	0.619	0.248	0.525	4.393	1.046	0.087	1.565	2.717	0.782	1.060	2.208	1.745	1.645	0.495	1.276	1.348	0.854	nan	nan	5.309	nan	1.011	0.854	1.043	1.172	1.017	1.046	1.626	0.575	0.419	5.634	1.737	0.277	1.718	0.617	0.525	0.687	0.699	0.598	0.412
7988	chr8	143775779	143783253	+	0	NA	Intergenic	MER65C|LTR|ERV1	-2013	NM_001160354	54742	Hs.69517	NM_017527	ENSG00000160886	LY6K	CT97|HSJ001348|URLC10|ly-6K	lymphocyte antigen 6 complex, locus K	protein-coding	1.299	0.928	nan	0.130	0.549	0.280	2.463	1.027	0.387	0.042	0.022	0.449	1.834	0.014	0.047	0.282	0.403	0.157	0.259	nan	0.964	nan	0.074	0.427	0.421	0.138	0.318	0.131	0.090	0.585	0.442	1.059	0.899	0.133	0.186	0.190	0.283	0.597	0.712	10.299	0.881	0.038	0.095	2.463	0.449	0.594	0.040	0.077	0.034
3038	chr16	4343330	4378837	+	0	NA	Intergenic	Intergenic	-3679	NM_001318918	84662	Hs.592087	NM_032575	ENSG00000126603	GLIS2	NKL|NPHP7	GLIS family zinc finger 2	protein-coding	1.234	nan	1.994	1.122	1.122	0.678	0.980	0.721	0.340	0.309	0.252	1.599	2.621	2.052	0.083	1.031	1.997	0.320	0.598	2.014	1.789	nan	0.651	1.969	1.835	0.532	nan	1.432	2.214	1.056	0.855	0.536	1.079	0.406	0.412	0.843	1.395	1.020	0.581	1.659	1.055	0.092	0.338	0.980	1.599	0.120	0.431	0.505	0.359
2151	chr12	114424043	114450508	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-33099	NM_001146699	9904	Hs.7482	NM_016196	ENSG00000122965	RBM19	-	RNA binding motif protein 19	protein-coding	nan	nan	0.408	0.503	1.091	0.564	0.203	0.080	0.036	0.445	0.202	1.946	0.553	0.041	0.108	0.237	0.148	0.182	0.144	nan	nan	nan	1.047	0.305	0.317	0.141	0.321	nan	nan	0.240	0.107	0.380	0.296	0.964	0.483	0.110	0.174	nan	1.800	0.359	0.812	0.158	0.024	0.203	1.946	0.048	1.134	0.198	0.033
618	chr1	161733846	161737101	+	0	NA	promoter-TSS (NM_007348)	promoter-TSS (NM_007348)	-561	NM_007348	22926	Hs.492740	NM_007348	ENSG00000118217	ATF6	ACHM7|ATF6A	activating transcription factor 6	protein-coding	5.738	4.163	4.546	4.353	3.243	1.226	1.214	5.387	0.348	3.079	1.668	3.173	6.825	6.143	0.341	4.548	6.243	9.153	12.338	4.910	nan	4.348	1.652	13.177	13.715	5.181	5.803	8.413	nan	7.328	6.467	18.086	12.219	5.669	8.756	6.108	8.892	3.991	2.297	0.956	6.236	0.873	2.690	1.214	3.173	1.010	3.534	6.697	1.936
848	chr1	212064463	212071539	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	63698	NR_135820	102723727	Hs.147656	NR_135818	ENSG00000229258	LOC102723727	-	uncharacterized LOC102723727	ncRNA	1.533	1.709	1.048	0.151	0.626	0.283	0.292	0.145	0.068	0.176	0.225	0.186	nan	0.138	0.144	0.346	0.383	3.507	2.435	0.496	0.440	nan	0.659	2.142	2.416	0.432	nan	0.598	0.666	0.371	0.177	0.111	0.138	6.383	8.940	0.362	0.763	1.032	0.719	0.078	0.076	2.669	0.145	0.292	0.186	0.111	0.259	0.014	0.140
6472	chr5	139216650	139230505	+	0	NA	3' UTR (NM_032289, exon 15 of 15)	3' UTR (NM_032289, exon 15 of 15)	48171	NM_032289	84249	Hs.21963	NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.788	0.802	nan	0.083	0.312	0.124	0.276	0.087	0.024	0.103	0.084	0.522	0.722	0.445	0.111	3.989	5.297	2.915	0.845	0.647	0.479	0.190	0.065	0.596	0.666	0.180	0.408	0.174	0.382	0.531	0.410	2.301	3.123	0.134	0.153	0.152	0.301	0.287	0.258	0.083	0.129	0.047	0.063	0.276	0.522	0.035	0.047	2.134	0.054
1904	chr12	31741296	31745115	+	0	NA	intron (NR_046909, intron 1 of 2)	CpG	171	NM_001308339	160518	Hs.118166	NM_144973	ENSG00000170456	DENND5B	-	DENN domain containing 5B	protein-coding	5.747	nan	5.522	6.340	2.572	1.415	3.963	1.150	0.127	2.186	0.926	5.164	7.742	3.600	0.174	4.308	4.904	3.099	4.292	9.721	7.864	4.225	1.256	6.357	5.686	2.593	3.672	1.488	3.428	4.850	5.722	1.612	4.229	17.565	17.584	5.730	4.049	1.824	1.229	3.143	3.794	5.608	4.203	3.963	5.164	0.894	6.385	0.710	1.568
5043	chr20	61786831	61812052	+	0	NA	Intergenic	Intergenic	-10411	NR_029670	406909		NR_029670	ENSG00000207598	MIR124-3	MIRN124-3|MIRN124A3|mir-124-3	microRNA 124-3	ncRNA	0.801	1.002	0.385	0.167	0.525	0.255	0.298	0.086	0.102	0.117	0.070	0.168	0.704	0.159	0.084	6.700	nan	0.082	0.147	0.655	0.577	0.744	0.288	0.367	0.422	0.455	0.704	0.142	0.169	1.074	0.927	1.043	1.263	0.127	0.120	0.157	0.207	0.429	0.458	0.878	0.063	0.019	0.034	0.298	0.168	0.287	0.314	0.566	0.039
1761	chr12	1904647	1911201	+	0	NA	intron (NM_172364, intron 34 of 37)	intron (NM_172364, intron 34 of 37)	-21509	NM_001163926	654429	Hs.585579	NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding	1.381	nan	nan	1.210	0.369	0.122	0.527	0.284	0.102	0.239	0.114	0.466	0.828	0.232	0.100	0.350	0.508	0.312	0.528	nan	1.093	1.587	0.388	1.346	1.704	1.116	1.870	0.350	0.596	0.729	0.570	1.085	1.452	0.530	0.307	0.630	nan	0.533	0.346	0.085	0.321	0.058	0.352	0.527	0.466	2.751	0.092	0.724	0.472
8177	chr9	85674416	85679098	+	0	NA	intron (NM_152573, intron 1 of 16)	MIRb|SINE|MIR	1286	NM_152573	158158	Hs.129136	NM_152573	ENSG00000165105	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding	3.095	7.449	5.414	9.385	2.601	1.229	1.781	0.302	0.136	3.718	0.989	1.663	0.819	0.092	0.068	0.812	0.894	2.989	2.798	2.817	1.713	0.509	0.091	3.408	3.252	2.521	3.611	4.907	9.081	0.566	0.460	0.483	1.119	12.545	9.533	0.222	0.127	3.742	2.479	3.140	0.433	2.211	2.476	1.781	1.663	0.227	0.065	0.130	
6856	chr6	80014242	80025651	+	0	NA	non-coding (NR_130915, exon 3 of 3)	non-coding (NR_130915, exon 3 of 3)	3155	NR_130915	80078		NR_130915		LCAL1	onco-lncRNA-27	lung cancer associated lncRNA 1	ncRNA	nan	nan	2.194	3.313	0.322	0.084	0.294	0.091	0.099	0.097	0.037	0.261	0.871	0.057	0.090	0.743	0.548	1.003	1.798	0.328	0.356	0.833	0.156	11.479	12.312	0.144	0.181	5.981	8.273	0.345	0.196	0.390	0.543	0.742	2.610	0.161	0.190	0.467	0.345	0.247	0.094	0.033	0.076	0.294	0.261	0.187	0.178	0.172	0.045
5758	chr3	187454104	187469788	+	0	NA	intron (NM_001706, intron 1 of 9)	intron (NM_001706, intron 1 of 9)	1567	NM_001706	604	Hs.478588	NM_001706	ENSG00000113916	BCL6	BCL5|BCL6A|LAZ3|ZBTB27|ZNF51	B-cell CLL/lymphoma 6	protein-coding	2.166	4.320	2.113	2.567	3.284	1.319	1.164	3.988	0.310	0.642	0.432	1.933	11.329	2.363	0.126	0.626	0.589	3.484	7.171	6.066	4.846	0.622	0.328	3.765	4.117	2.325	3.235	5.269	8.431	2.780	2.306	0.919	1.367	0.330	0.441	0.288	0.435	1.891	1.189	5.123	1.147	0.043	0.804	1.164	1.933	0.201	1.329	0.163	0.150
2662	chr14	69817289	69829838	+	0	NA	Intergenic	AluY|SINE|Alu	41458	NM_004450	2079	Hs.509791	NM_004450	ENSG00000100632	ERH	DROER	enhancer of rudimentary homolog (Drosophila)	protein-coding	1.387	0.615	0.727	0.144	0.298	0.158	0.280	0.197	0.064	0.049	0.080	0.167	0.457	0.043	0.102	0.490	0.411	0.293	0.444	0.501	0.519	0.317	0.207	0.536	0.528	0.431	0.765	2.293	nan	0.832	0.738	0.375	0.406	0.099	0.159	0.182	0.276	0.829	nan	11.295	1.968	0.015	0.151	0.280	0.167	0.116	0.161	0.055	0.059
1492	chr11	69025740	69084767	+	0	NA	Intergenic	Intergenic	-6352	NM_001300923	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding	nan	0.783	0.480	0.058	0.202	0.093	0.193	0.149	0.057	0.050	0.075	0.039	0.376	0.085	0.094	1.777	1.794	0.276	0.677	0.343	0.363	0.153	0.082	4.973	5.402	0.134	0.234	0.292	0.365	0.682	0.652	1.149	1.402	0.079	0.102	0.081	0.108	0.247	0.298	0.038	0.042	0.021	0.034	0.193	0.039	0.206	0.245	0.966	0.025
7332	chr7	75920335	75949370	+	0	NA	Intergenic	AluSq2|SINE|Alu	2977	NM_001540	3315	Hs.520973	NM_001540	ENSG00000106211	HSPB1	CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27	heat shock protein family B (small) member 1	protein-coding	nan	1.766	2.092	1.435	2.340	1.182	1.532	1.649	0.772	1.483	1.023	1.446	3.849	2.344	0.186	0.918	1.435	1.275	nan	2.226	2.229	3.773	1.251	0.371	0.360	1.059	nan	2.114	nan	2.417	2.028	1.105	1.874	2.051	2.004	1.864	3.416	2.896	1.363	1.941	2.678	0.501	0.890	1.532	1.446	0.593	1.148	0.345	0.545
6438	chr5	124436074	124492345	+	0	NA	intron (NR_109882, intron 2 of 5)	intron (NR_109882, intron 2 of 5)	91685	NR_109882	101927421	Hs.121305	NR_109882		LOC101927421	-	uncharacterized LOC101927421	ncRNA	nan	0.900	0.695	0.097	0.277	0.159	0.165	0.268	0.060	0.086	0.077	0.097	0.279	5.717	0.227	0.258	0.175	1.143	nan	0.183	0.244	0.305	0.120	0.261	0.287	0.486	0.679	0.338	0.317	0.399	0.169	0.100	0.143	0.297	0.475	0.402	1.558	0.318	0.344	0.036	0.084	0.053	0.060	0.165	0.097	0.033	0.051	0.033	0.265
1100	chr10	38773943	38786155	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	62975	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA	3.096	4.645	3.380	0.562	0.814	0.409	0.668	0.496	3.114	0.349	0.991	0.389	0.937	0.143	0.911	1.216	0.479	0.513	nan	1.017	1.859	0.548	0.363	0.784	0.873	1.181	1.763	0.669	0.708	1.716	0.326	0.331	0.778	0.350	0.806	0.435	0.997	0.569	0.844	0.100	0.445	0.298	0.273	0.668	0.389	0.072	0.110	0.161	0.224
2861	chr15	45100720	45125425	+	0	NA	Intergenic	Intergenic	84512	NM_001301145	140691	Hs.745248	NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding	1.562	1.062	nan	0.712	1.056	0.604	0.477	0.091	0.111	1.034	0.537	2.103	2.940	0.048	0.088	0.305	0.276	0.297	0.747	4.809	5.657	3.180	1.114	0.159	0.154	0.315	nan	1.819	2.006	2.448	2.271	0.343	0.649	2.893	3.264	0.229	0.260	1.485	0.965	2.022	1.700	1.002	0.399	0.477	2.103	0.692	0.324	0.867	0.094
8140	chr9	45351512	45358281	+	0	NA	Intergenic	L1M4|LINE|L1	-349606	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA	2.931	7.711	5.993	5.257	3.417	1.703	4.524	0.155	0.215	4.136	3.150	5.230	9.814	2.339	0.297	5.666	7.399	1.317	2.127	8.012	7.022	12.151	7.459	5.320	4.970	7.006	7.935	3.060	4.020	7.276	9.293	4.674	8.808	7.722	5.469	4.355	5.641	5.475	3.316	4.211	2.426	2.392	3.498	4.524	5.230	1.407	5.567	3.927	1.710
1719	chr11	126213950	126266016	+	0	NA	intron (NM_006278, intron 1 of 10)	L1MC4a|LINE|L1	14194	NM_006278	6484	Hs.591947	NM_006278	ENSG00000110080	ST3GAL4	CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	1.035	1.962	1.125	0.808	0.611	0.263	0.632	0.162	0.068	0.241	0.264	0.429	6.385	0.377	0.094	1.300	2.136	0.761	1.188	0.840	0.830	1.803	0.537	0.877	0.949	1.534	2.054	1.424	1.696	0.973	1.030	1.306	1.575	0.835	0.945	0.727	nan	0.884	0.679	0.672	0.268	0.156	0.226	0.632	0.429	0.218	0.307	0.444	0.457
7505	chr7	139022627	139028261	+	0	NA	promoter-TSS (NM_001244584)	promoter-TSS (NM_001244584)	248	NR_073059	154791	Hs.718441	NM_197964	ENSG00000164898	FMC1	C7orf55|HSPC268	formation of mitochondrial complex V assembly factor 1 homolog	protein-coding	6.415	nan	nan	5.009	6.952	3.441	3.892	2.580	0.371	2.912	1.565	5.840	8.632	6.199	0.237	8.681	8.796	6.357	8.789	9.261	8.739	nan	6.173	24.906	26.977	4.337	nan	6.102	9.486	nan	10.564	6.384	9.174	7.404	8.465	8.941	13.061	5.991	nan	4.016	6.072	1.263	2.399	3.892	5.840	1.306	2.360	4.091	3.297
5755	chr3	186540038	186546123	+	0	NA	intron (NR_125409, intron 1 of 3)	intron (NR_125409, intron 1 of 3)	230	NR_125409	102724699	Hs.518476	NR_125409	ENSG00000232233	LINC02043	-	long intergenic non-protein coding RNA 2043	ncRNA	2.114	1.833	1.022	1.809	1.394	0.491	1.914	0.270	0.026	0.875	0.502	0.452	4.665	0.535	0.039	1.218	1.561	0.883	1.529	2.513	2.341	14.879	4.147	2.166	2.524	0.715	1.389	1.742	2.804	3.537	4.496	0.759	1.310	4.326	3.846	1.675	1.732	3.494	1.586	1.041	1.274	0.762	0.754	1.914	0.452	0.177	0.347	0.243	0.855
5849	chr4	24583864	24586893	+	0	NA	intron (NM_001358, intron 1 of 13)	intron (NM_001358, intron 1 of 13)	806	NM_001358	1665	Hs.696074	NM_001358	ENSG00000109606	DHX15	DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p	DEAH-box helicase 15	protein-coding	7.593	3.756	5.744	11.022	9.586	5.194	7.510	4.563	0.371	5.610	2.154	6.425	10.207	4.374	0.109	10.503	8.658	13.638	15.452	9.748	8.595	11.637	6.659	21.316	20.896	6.091	7.248	9.722	15.698	14.134	16.111	3.724	9.886	7.383	8.160	9.255	7.220	nan	4.071	3.831	7.292	0.979	5.744	7.510	6.425	1.823	2.913	2.680	3.079
7529	chr7	148394260	148398735	+	0	NA	intron (NM_003592, intron 1 of 21)	CpG	564	NM_003592	8454	Hs.146806	NM_003592	ENSG00000055130	CUL1	-	cullin 1	protein-coding	9.620	3.186	7.646	5.555	4.296	2.150	6.041	4.351	0.433	4.484	1.883	10.495	7.890	7.651	0.211	9.705	9.806	8.224	11.204	11.301	10.543	6.864	3.673	15.184	14.171	5.009	6.614	5.317	9.724	10.807	13.845	6.826	14.300	7.446	5.935	12.942	10.739	5.024	nan	2.572	7.342	1.154	4.158	6.041	10.495	1.886	5.266	3.176	2.948
71	chr1	9870707	9936068	+	0	NA	Intergenic	Intergenic	-18803	NM_014944	22883	Hs.29665	NM_014944	ENSG00000171603	CLSTN1	ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2	calsyntenin 1	protein-coding	1.937	nan	1.683	2.184	0.683	0.324	0.777	0.253	0.187	0.461	0.230	0.521	3.757	0.271	0.115	0.835	1.200	0.521	0.791	1.533	1.532	0.498	0.161	0.621	0.629	2.401	nan	nan	3.922	nan	2.106	0.403	0.562	0.460	0.424	1.726	3.882	1.607	0.876	2.189	0.447	0.125	0.190	0.777	0.521	0.715	0.451	0.134	0.901
1481	chr11	67210095	67221559	+	0	NA	Intergenic	Intergenic	-4059	NM_001300896	57010	Hs.143036	NM_145200	ENSG00000175544	CABP4	CRSD|CSNB2B	calcium binding protein 4	protein-coding	nan	1.670	2.178	2.244	1.583	0.866	0.894	0.612	0.199	0.668	0.394	2.455	2.591	1.050	0.140	1.637	2.486	1.243	1.581	2.174	2.242	4.176	1.437	1.862	2.034	0.982	1.478	4.283	4.436	1.045	0.720	1.153	1.259	0.832	0.814	0.642	0.870	1.607	0.901	0.783	0.971	0.141	0.579	0.894	2.455	0.619	2.701	0.397	0.420
2927	chr15	68863996	68898182	+	0	NA	intron (NM_006091, intron 1 of 11)	intron (NM_006091, intron 1 of 11)	9781	NM_006091	10391	Hs.551213	NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding	1.445	1.434	nan	0.105	1.136	0.694	1.901	0.205	0.075	0.198	0.153	0.224	2.919	0.130	0.058	3.573	4.743	1.058	0.541	1.005	0.768	nan	0.522	2.095	2.179	1.331	2.004	0.441	0.531	2.973	2.516	2.065	2.558	0.748	0.740	1.966	4.674	0.357	0.412	0.504	0.455	0.239	0.329	1.901	0.224	0.306	0.036	1.164	1.723
8054	chr9	13827139	13834410	+	0	NA	Intergenic	Intergenic	-97196	NR_038194	100113404	Hs.149786	NR_038194	ENSG00000205636	LINC00583	C9orf146	long intergenic non-protein coding RNA 583	ncRNA	nan	nan	0.721	0.119	0.327	0.177	0.159	0.134	0.089	0.087	0.187	0.148	0.356	0.029	0.092	1.286	0.547	7.990	1.666	0.246	0.379	0.309	0.152	0.184	0.165	3.328	4.365	0.384	0.326	0.325	0.142	0.207	0.364	0.151	0.157	0.114	0.382	0.920	0.794	0.069	0.086	0.027	0.088	0.159	0.148	0.028	0.028	0.054	0.017
7608	chr8	17778496	17783379	+	0	NA	intron (NM_006197, intron 1 of 38)	CpG	571	NM_001315508	5108	Hs.491148	NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding	5.452	3.868	nan	4.076	7.382	3.689	3.961	1.756	0.365	2.999	1.404	10.415	5.226	4.497	0.160	7.836	7.685	7.788	10.540	16.043	12.789	9.888	5.998	25.188	27.465	3.068	3.364	6.100	11.370	5.526	6.155	2.903	5.163	6.191	6.493	6.257	5.728	5.240	2.985	4.544	4.073	1.112	1.858	3.961	10.415	0.911	3.713	2.108	1.717
6535	chr5	163075599	163089675	+	0	NA	Intergenic	L1MEd|LINE|L1	150103	NM_013283	27430	Hs.54642	NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2B	protein-coding	nan	0.953	2.350	0.273	0.201	0.091	0.108	0.177	0.081	0.288	0.203	0.025	0.219	0.046	0.140	0.405	0.477	0.685	0.287	0.105	0.136	0.067	0.047	0.063	0.062	0.769	1.475	0.201	0.227	1.848	1.864	0.056	0.151	1.361	2.156	1.124	6.881	0.682	0.499	0.016	0.025	0.516	0.389	0.108	0.025	0.201	0.505	0.014	3.689
4564	chr2	161010792	161024847	+	0	NA	intron (NM_001282389, intron 7 of 14)	intron (NM_001282389, intron 7 of 14)	39005	NM_001282389	3694	Hs.470399	NM_000888	ENSG00000115221	ITGB6	AI1H	integrin subunit beta 6	protein-coding	0.867	0.671	nan	0.053	0.284	0.126	0.146	0.085	0.035	0.079	0.088	0.028	0.302	0.023	0.075	0.271	0.205	4.536	12.460	0.229	0.213	0.098	0.052	0.269	0.210	0.249	0.487	0.132	0.237	0.317	0.124	0.322	0.453	0.042	0.040	0.384	0.587	0.248	0.327	0.023	0.044	0.006	0.044	0.146	0.028	0.021	0.022	0.105	0.159
512	chr1	148597433	148606518	+	0	NA	intron (NR_104217, intron 2 of 17).2	intron (NR_104217, intron 2 of 17).2	41128	NM_173638	284565	Hs.523572	NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	neuroblastoma breakpoint family member 15	protein-coding	1.756	nan	1.610	2.297	1.105	0.475	1.228	0.656	0.105	2.301	1.487	1.671	8.070	2.196	0.168	2.218	3.434	0.677	0.885	1.496	1.656	3.420	1.709	2.936	2.904	1.124	1.602	3.747	4.404	2.880	3.524	5.534	8.553	1.503	1.426	1.909	3.403	1.113	0.683	1.747	2.406	0.639	0.358	1.228	1.671	0.742	3.909	3.640	0.785
5974	chr4	99484014	99510783	+	0	NA	intron (NM_005723, intron 1 of 7)	intron (NM_005723, intron 1 of 7)	82414	NM_005723	10098	Hs.118118	NM_005723	ENSG00000168785	TSPAN5	NET-4|NET4|TM4SF9|TSPAN-5	tetraspanin 5	protein-coding	1.475	0.803	2.260	0.282	0.195	0.098	0.287	0.256	0.114	0.083	0.071	0.054	0.949	0.037	0.080	0.538	0.724	0.601	1.560	0.646	0.646	0.044	0.032	0.163	0.164	1.001	1.314	0.411	0.516	2.547	2.630	0.202	0.260	0.509	0.854	1.993	5.715	0.141	0.218	0.014	0.144	0.146	0.074	0.287	0.054	0.452	0.316	0.078	2.512
463	chr1	116708742	116716751	+	0	NA	Intergenic	AluJr4|SINE|Alu	58370	NM_152367	126868	Hs.376194	NM_152367	ENSG00000173212	MAB21L3	C1orf161	mab-21 like 3	protein-coding	nan	1.417	0.883	0.207	0.350	0.199	0.189	0.158	0.082	0.177	0.110	1.091	0.322	0.162	0.081	0.633	0.324	14.498	14.197	0.324	nan	2.243	0.605	0.908	1.136	0.287	0.480	0.445	0.346	0.360	0.266	2.373	4.305	0.579	0.634	0.311	0.764	0.775	0.634	0.555	0.375	0.084	0.071	0.189	1.091	0.096	0.038	2.006	0.046
517	chr1	149574822	149594112	+	0	NA	intron (NR_111957, intron 2 of 3)	intron (NR_111957, intron 2 of 3)	8000	NR_024511	728855	Hs.456578	NR_024510		LINC00623	CH17-118O6.2	long intergenic non-protein coding RNA 623	ncRNA	2.695	nan	1.929	1.059	0.422	0.200	0.347	0.466	0.202	0.676	0.525	0.676	5.238	1.869	0.159	1.635	1.815	1.920	2.904	2.662	2.190	1.226	0.527	13.348	11.085	1.008	1.320	1.817	2.645	0.994	0.836	5.013	6.623	1.643	1.740	0.961	1.493	1.025	0.860	0.850	2.423	0.706	0.178	0.347	0.676	0.046	2.866	3.563	0.371
5887	chr4	48833020	48834640	+	0	NA	intron (NM_001168254, intron 1 of 8)	intron (NM_001168254, intron 1 of 8)	507	NM_001168254	54940	Hs.518750	NM_017830	ENSG00000109180	OCIAD1	ASRIJ|OCIA|TPA018	OCIA domain containing 1	protein-coding	8.358	nan	nan	13.287	7.705	4.167	7.795	6.373	0.295	8.170	3.205	7.153	11.992	6.659	0.202	18.609	15.178	23.091	21.896	14.711	13.839	17.803	11.311	30.755	32.778	9.772	11.426	12.988	20.348	18.629	18.718	13.451	16.356	8.630	11.321	12.471	12.906	8.604	5.079	5.249	7.657	1.632	3.861	7.795	7.153	1.231	2.044	5.061	4.405
8379	chrX	39941064	39970013	+	0	NA	intron (NM_001123384, intron 1 of 13)	CpG	1181	NM_017745	54880	Hs.659681	NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding	4.068	3.311	2.917	3.824	3.020	1.640	2.591	1.735	0.233	1.857	0.735	3.362	6.161	1.371	0.052	2.232	2.697	2.241	3.783	6.549	5.479	2.433	0.868	2.996	2.779	1.792	2.439	3.334	4.638	3.816	5.054	2.070	3.247	2.151	1.910	1.821	3.046	1.119	0.742	2.634	1.684	0.873	3.122	2.591	3.362	0.848	1.482	1.696	1.675
1363	chr11	31461886	31472442	+	0	NA	intron (NM_144981, intron 5 of 6)	intron (NM_144981, intron 5 of 6)	64011	NM_144981	196294	Hs.502223	NM_144981	ENSG00000148950	IMMP1L	IMMP1|IMP1|IMP1-LIKE	inner mitochondrial membrane peptidase subunit 1	protein-coding	0.923	1.152	nan	2.819	1.069	0.364	0.890	0.156	0.045	2.683	1.608	0.333	0.500	0.031	0.173	0.597	0.375	0.996	0.978	0.732	0.941	5.129	1.782	0.468	0.637	0.986	1.285	1.251	1.465	0.414	0.288	0.301	0.354	1.703	2.629	0.253	nan	2.270	0.994	0.043	0.666	0.501	0.120	0.890	0.333	0.083	0.077	0.028	0.152
6691	chr6	27853697	27871655	+	0	NA	Intergenic	Intergenic	1473	NM_003527	8348	Hs.484991	NM_003527	ENSG00000274641	HIST1H2BO	H2B.2|H2B/n|H2BFN|dJ193B12.2	histone cluster 1 H2B family member o	protein-coding	4.447	2.158	nan	3.922	4.138	2.029	2.201	1.483	0.286	1.406	0.710	4.776	nan	4.716	0.185	5.828	7.045	4.668	nan	6.555	4.821	nan	4.774	9.004	9.292	3.013	3.939	4.660	6.013	5.724	6.101	1.302	2.969	5.371	4.712	4.821	4.750	2.273	1.181	1.510	4.201	1.040	2.382	2.201	4.776	0.717	1.461	1.538	1.774
1109	chr10	42661358	42667615	+	0	NA	Intergenic	HSATII|Satellite|Satellite	199007	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo	3.586	nan	3.213	0.760	1.300	0.903	0.976	0.672	6.739	0.651	2.035	0.446	2.030	0.467	2.096	0.628	0.351	0.258	0.336	0.614	1.053	0.329	0.242	0.571	0.479	0.637	0.942	0.570	0.623	1.066	0.220	0.202	0.635	0.188	0.380	0.382	0.849	0.236	0.401	0.256	0.476	0.526	0.265	0.976	0.446	0.062	0.276	0.549	0.535
3051	chr16	12397814	12416402	+	0	NA	intron (NM_032167, intron 15 of 20)	AluSx1|SINE|Alu	336517	NM_032167	92017	Hs.458401	NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding	1.051	0.710	nan	0.392	0.993	0.647	0.302	0.099	0.069	0.364	0.171	0.638	2.141	0.023	0.100	1.004	0.820	0.128	0.387	0.640	0.530	4.826	1.485	2.583	2.777	0.789	1.262	1.245	1.492	nan	0.920	1.813	2.307	0.699	0.960	0.930	1.330	2.851	1.367	0.752	0.937	0.098	0.111	0.302	0.638	0.303	0.228	1.979	0.346
6787	chr6	45515203	45547430	+	0	NA	Intergenic	Intergenic	141002	NM_001278478	860	Hs.535845	NM_004348	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	runt related transcription factor 2	protein-coding	1.507	0.869	0.798	0.206	0.334	0.154	0.195	0.615	0.141	0.063	0.107	0.171	0.327	0.057	0.111	0.987	0.787	1.758	6.396	0.337	0.294	0.114	0.060	0.625	0.649	0.121	0.216	0.862	nan	0.384	0.209	0.354	0.503	0.095	0.106	0.481	1.405	0.541	0.585	0.160	0.102	0.020	0.104	0.195	0.171	0.018	0.081	0.209	0.337
2067	chr12	86217898	86234146	+	0	NA	intron (NM_005447, intron 1 of 1)	intron (NM_005447, intron 1 of 1)	4296	NM_005447	9182	Hs.527881	NM_005447	ENSG00000198774	RASSF9	P-CIP1|PAMCI|PCIP1	Ras association domain family member 9	protein-coding	0.852	0.765	1.064	0.169	0.463	0.181	0.086	1.786	0.215	1.256	0.977	0.206	0.341	0.209	0.113	0.387	0.337	1.139	1.431	0.371	0.433	1.984	0.802	0.352	0.348	4.628	5.638	0.418	0.423	0.375	0.200	0.255	0.311	3.256	3.551	0.225	0.492	1.156	0.744	0.010	0.077	0.885	0.132	0.086	0.206	0.030	0.060	0.047	0.031
8219	chr9	99175403	99183804	+	0	NA	intron (NM_153695, intron 1 of 4)	CpG	1066	NM_153695	195828	Hs.494557	NM_153695	ENSG00000165244	ZNF367	AFF29|CDC14B|ZFF29	zinc finger protein 367	protein-coding	4.622	nan	5.312	7.729	5.364	2.947	3.910	1.863	0.200	2.501	1.074	5.576	10.565	3.581	0.082	3.170	3.939	5.042	nan	8.605	7.095	4.267	2.397	4.824	4.483	2.213	2.769	5.746	9.656	7.394	8.240	1.811	4.122	6.609	7.613	4.292	4.163	2.842	1.417	3.011	2.988	2.185	3.088	3.910	5.576	1.040	2.851	1.930	1.202
2154	chr12	115879545	115891968	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	700703	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA	nan	nan	0.465	1.021	1.318	0.562	1.215	0.047	0.013	0.077	0.127	2.323	1.939	0.061	0.106	1.436	1.254	0.444	0.848	nan	nan	nan	0.176	6.185	6.591	0.105	0.195	nan	nan	0.342	0.258	1.196	2.065	0.274	0.402	0.467	0.797	nan	0.436	4.493	0.292	0.069	0.293	1.215	2.323	0.048	1.557	1.372	0.268
6023	chr4	138044389	138055478	+	0	NA	Intergenic	Intergenic	-64977	NR_134640	729307	Hs.552764	NR_134640		LOC729307	-	uncharacterized LOC729307	ncRNA	nan	nan	0.532	0.160	0.304	0.101	0.093	0.601	0.087	0.199	0.177	0.151	0.192	0.020	0.069	0.305	0.226	6.093	4.245	0.163	0.357	0.288	0.114	0.136	0.160	0.512	0.719	0.451	0.475	0.445	0.198	0.179	0.273	0.162	0.136	0.307	nan	0.617	0.380	0.031	0.048	0.024	0.146	0.093	0.151	0.026	0.037	0.027	0.034
4171	chr2	1109706	1114242	+	0	NA	intron (NM_018968, intron 4 of 16)	intron (NM_018968, intron 4 of 16)	-164896	NR_136151	101060391	Hs.120377	NR_136151		LOC101060391	-	uncharacterized LOC101060391	ncRNA	0.390	0.417	0.444	0.037	0.221	0.106	1.543	0.034	0.031	1.145	0.560	4.854	0.281	0.096	0.134	0.267	0.181	0.237	0.543	12.590	15.353	0.098	0.040	0.135	0.145	0.215	0.272	1.043	0.895	0.168	0.088	0.052	0.186	0.066	0.032	0.109	0.217	2.864	2.086	0.037	1.254	0.020	0.035	1.543	4.854	0.084	0.089	0.109	0.028
742	chr1	188783117	188794220	+	0	NA	Intergenic	Intergenic	1375908	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA	nan	nan	0.932	0.081	0.263	0.129	0.286	0.176	0.145	0.367	0.396	0.517	0.250	0.051	0.095	0.490	0.378	0.301	0.522	0.929	nan	1.743	0.450	nan	0.396	1.149	1.295	0.701	0.561	14.107	12.025	0.441	0.716	1.057	0.617	0.351	nan	0.827	0.516	0.086	0.089	0.161	0.156	0.286	0.517	0.071	0.129	0.133	0.045
7712	chr8	62624573	62628471	+	0	NA	promoter-TSS (NR_039680)	promoter-TSS (NR_039680)	677	NM_001164755	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding	7.526	2.717	4.767	4.423	3.394	1.563	3.274	4.304	0.333	2.208	1.076	2.620	12.946	0.977	0.112	2.550	3.176	3.427	5.226	11.493	8.486	7.679	2.975	4.039	4.223	4.666	nan	2.442	4.451	nan	5.940	2.956	6.057	6.331	7.015	5.485	6.919	4.154	2.538	4.965	4.874	1.107	2.343	3.274	2.620	5.593	4.002	1.807	2.293
58	chr1	8213095	8245368	+	0	NA	Intergenic	AluSx1|SINE|Alu	-39501	NR_125998	102724539	Hs.516816	NR_125998	ENSG00000227634	LINC01714	-	long intergenic non-protein coding RNA 1714	ncRNA	1.177	nan	1.348	2.133	0.521	0.279	0.377	0.447	0.265	0.320	0.201	0.246	3.671	0.161	0.112	0.462	0.687	0.258	0.592	0.805	0.845	2.321	0.942	0.329	0.357	0.955	nan	nan	7.650	nan	0.667	0.463	0.582	0.422	0.773	0.263	0.387	1.400	0.758	0.649	0.686	0.086	0.255	0.377	0.246	0.177	0.446	0.365	0.146
4980	chr20	47077045	47095593	+	0	NA	Intergenic	Intergenic	97665	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA	nan	nan	0.885	0.090	0.248	0.112	0.510	0.125	0.070	0.068	0.036	0.099	0.660	0.045	0.082	0.451	0.279	0.145	0.311	1.239	1.040	nan	0.111	0.116	0.103	3.272	3.832	0.157	0.156	nan	1.283	0.295	0.317	0.098	0.182	0.273	0.442	0.257	0.517	0.310	0.202	0.005	0.106	0.510	0.099	0.635	0.011	0.043	0.087
4086	chr19	43036433	43042115	+	0	NA	intron (NR_073180, intron 2 of 2)	L1MA2|LINE|L1	-6613	NM_001024912	634	Hs.512682	NM_001712	ENSG00000079385	CEACAM1	BGP|BGP1|BGPI	carcinoembryonic antigen related cell adhesion molecule 1	protein-coding	0.856	0.937	0.851	0.079	0.295	0.154	0.068	0.108	0.053		0.177	0.063	0.231	0.038	0.114	8.455	4.429	9.383	1.382	0.333	0.352	0.443	0.274	0.283	0.311	0.290	0.387	0.181	0.253	0.278	0.165	3.819	6.635	0.082	0.115	0.227	0.217	0.940	0.604	0.030	0.047	0.027		0.068	0.063	0.017	0.036	4.488	0.022
6028	chr4	140722865	140779502	+	0	NA	intron (NM_018717, intron 3 of 5)	L3|LINE|CR1	164261	NM_002413	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	1.142	1.223	1.004	1.812	5.490	2.938	0.515	0.391	0.109	1.646	0.926	2.108	2.070	0.031	0.086	0.271	0.334	0.520	0.387	1.333	1.231	4.585	2.246	0.136	0.117	2.738	3.513	1.679	1.793	0.820	0.602	0.282	0.515	1.893	1.867	0.821	1.793	1.494	0.759	1.124	0.612	0.486	0.779	0.515	2.108	0.158	0.463	0.207	0.377
3906	chr18	74794459	74811182	+	0	NA	intron (NM_001025100, intron 2 of 3)	intron (NM_001025100, intron 2 of 3)	41954	NM_001025100	4155	Hs.551713	NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding	nan	nan	0.940	0.359	0.654	0.315	0.799	0.755	0.086	0.357	0.269	0.624	0.751	0.029	0.057	0.669	0.915	0.629	1.226	0.910	nan	4.602	1.321	0.583	0.507	0.185	0.326	0.624	nan	0.384	0.210	0.320	0.408	0.892	1.070	0.083	0.140	1.702	0.880	0.093	0.154	0.132	0.146	0.799	0.624	0.040	0.340	0.142	0.022
2425	chr13	105934658	105940053	+	0	NA	Intergenic	L2a|LINE|L2	-180861	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding	0.838	0.773	0.478	0.064	0.232	0.090	0.707	0.056	0.120	0.057	0.072	0.088	0.598	0.021	0.075	0.706	0.767	7.901	4.761	0.303	0.291	0.127	0.157	0.314	0.275	0.125	nan	0.163	0.307	0.317	0.127	0.161	0.147	0.032	0.064	0.253	nan	0.147	0.172	0.021	0.082		0.136	0.707	0.088	0.072	0.019	0.054	0.022
1703	chr11	121321634	121348613	+	0	NA	intron (NM_003105, intron 1 of 47)	intron (NM_003105, intron 1 of 47)	12211	NM_003105	6653	Hs.368592	NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding	1.045	2.545	1.206	0.868	0.946	0.546	0.692	0.366	0.166	0.513	0.316	0.165	3.018	0.314	0.124	0.565	0.750	0.418	0.952	0.820	0.746	3.704	1.202	0.454	0.492	1.650	2.305	0.145	0.152	1.170	0.929	2.015	2.783	1.568	1.636	0.187	nan	1.598	0.946	2.339	1.187	0.435	0.206	0.692	0.165	0.162	0.516	1.557	0.132
4671	chr2	203129017	203133159	+	0	NA	intron (NM_015934, intron 1 of 14)	AluSq|SINE|Alu	649	NM_015934	51602	Hs.471104	NM_015934	ENSG00000055044	NOP58	HSPC120|NOP5|NOP5/NOP58	NOP58 ribonucleoprotein	protein-coding	7.113	4.858	5.897	7.001	7.617	3.553	5.523	2.300	0.966	2.615	1.697	5.682	12.247	3.769	0.167	6.718	7.329	9.018	13.338	8.773	7.766	8.760	4.991	23.452	25.497	7.110	9.004	12.222	17.267	12.367	16.780	6.960	11.438	6.061	6.140	12.974	11.372	4.246	2.149	4.262	3.079	0.940	2.788	5.523	5.682	2.273	2.601	2.964	2.927
6527	chr5	158508656	158534063	+	0	NA	intron (NM_001324101, intron 4 of 16)	intron (NM_001324101, intron 4 of 16)	5411	NM_001324101	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding	2.561	nan	3.797	0.035	0.664	0.333	1.284	1.377	0.203	0.301	0.279	0.532	0.485	0.051	0.106	0.636	0.737	0.230	0.316	7.323	6.745	0.149	0.057	0.055	0.035	1.005	1.554	0.095	0.111	6.803	6.720	1.264	1.973	0.165	0.128	1.756	3.657	0.741	0.489	2.615	2.998	0.038	4.169	1.284	0.532	0.715	0.040	1.181	1.280
5073	chr21	22543584	22565100	+	0	NA	intron (NM_004540, intron 1 of 17)	FLAM_C|SINE|Alu	183709	NM_004540	4685	Hs.473450	NM_004540	ENSG00000154654	NCAM2	NCAM21	neural cell adhesion molecule 2	protein-coding	0.684	0.734	0.806	0.037	0.175	0.155	0.197	0.078	0.060	0.131	0.149	0.050	0.361	0.040	0.090	0.449	0.367	0.596	0.484	0.376	0.401	0.347	0.118	0.094	0.097	3.883	4.184	0.232	0.287	0.605	0.196	0.096	0.151	2.892	2.910	0.193	nan	0.436	0.322	0.204	0.054	0.867	0.024	0.197	0.050	0.013	0.052	0.020	0.041
5880	chr4	41814706	41849528	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	52511	NR_104143	101927074	Hs.611425	NR_104143	ENSG00000245870	LINC00682	-	long intergenic non-protein coding RNA 682	ncRNA	1.174	nan	nan	0.094	0.156	0.111	0.084	0.092	0.093	0.127	0.142	0.052	0.207	0.013	0.083	0.313	0.159	0.164	0.194	0.200	0.216	0.119	0.081	0.118	0.103	0.128	0.275	0.224	0.199	1.364	1.178	0.121	0.146	0.044	0.040	1.430	5.014	0.590	0.777	0.018	0.150	0.022	0.648	0.084	0.052	0.043	0.035	0.040	2.612
4519	chr2	140589397	140598871	+	0	NA	Intergenic	MIRb|SINE|MIR	750120	NR_106979	102465692		NR_106979	ENSG00000283506	MIR7157	hsa-mir-7157	microRNA 7157	ncRNA	0.779	nan	0.778	0.149	0.268	0.219	0.107	0.048	0.188	0.083	0.115	0.152	0.323		0.055	0.270	0.210	0.440	0.321	0.207	0.274	0.721	0.283	0.084	0.150	0.794	1.097	0.299	0.321	0.371	0.187	0.118	0.203	38.069	48.206	0.321	0.484	0.171	0.254	0.006	0.028	12.218	0.066	0.107	0.152	0.031	0.022	0.021	0.079
4018	chr19	31862308	31884758	+	0	NA	Intergenic	Intergenic	-33102	NM_020856	57616	Hs.278436	NM_020856	ENSG00000121297	TSHZ3	TSH3|ZNF537	teashirt zinc finger homeobox 3	protein-coding	0.494	0.492	0.483	0.104	0.164	0.108	0.303	0.084	0.079	0.045	0.120	0.174	0.445	0.059	0.109	0.406	0.554	0.294	0.310	0.180	0.199	0.167	0.088	0.167	0.135	0.144	0.276	0.141	0.141	nan	0.083	0.380	0.391	0.055	0.065	0.223	0.219	0.180	0.299	2.623	0.075	0.034	0.014	0.303	0.174	0.013	0.733	0.031	0.055
1172	chr10	84439159	84452507	+	0	NA	intron (NM_001165973, intron 3 of 10)	Tigger3b|DNA|TcMar-Tigger	-453157	NR_120666	101929590	Hs.733268	NR_120666	ENSG00000225738	NRG3-AS1	C10orf100|Em:AC010157.1	NRG3 antisense RNA 1	ncRNA	0.461	0.600	0.600	0.013	0.177	0.036	0.009	0.050	0.085	0.035	0.079	0.051	0.209	0.057	0.076	0.280	0.182	0.266	0.359	0.111	0.117	0.098	0.031	0.085	0.069	4.726	4.807	0.303	0.306	0.189	0.089	0.065	0.122	0.056	0.074	0.198	0.368	0.238	0.311	0.008	0.020	0.014	0.030	0.009	0.051		0.023	0.030	0.019
5598	chr3	149281223	149339700	+	0	NA	intron (NM_015472, intron 2 of 6)	intron (NM_015472, intron 2 of 6)	65351	NM_001168280	25937	Hs.477921	NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding	1.261	nan	nan	0.162	0.413	0.210	0.628	2.545	0.413	0.191	0.205	0.111	0.290	0.076	0.095	0.611	0.485	2.707	4.759	0.328	0.389	nan	0.208	0.271	0.268	1.890	nan	0.756	nan	nan	0.492	0.286	0.488	0.056	0.113	0.276	0.481	0.651	0.641	0.025	0.073	0.010	0.054	0.628	0.111	0.022	0.430	0.118	0.118
4912	chr20	30624118	30641922	+	0	NA	Intergenic	AluSq2|SINE|Alu	-6971	NM_001172131	3055	Hs.655210	NM_002110	ENSG00000101336	HCK	JTK9|p59Hck|p61Hck	HCK proto-oncogene, Src family tyrosine kinase	protein-coding	0.916	1.104	0.796	0.327	0.411	0.143	0.122	0.126	0.145	0.150	0.137	0.363	0.442	0.164	0.115	3.198	4.291	3.241	0.973	0.337	nan	1.680	0.606	0.186	0.230	0.267	0.439	0.526	0.712	0.632	0.341	1.607	1.719	0.202	0.347	0.250	nan	0.366	0.325	0.065	0.086	0.070	0.082	0.122	0.363	0.066	0.074	0.526	0.118
285	chr1	45272291	45286652	+	0	NA	3' UTR (NM_001136537, exon 8 of 8)	3' UTR (NM_001136537, exon 8 of 8)	5317	NM_001136537	149478	Hs.632400	NM_001136537	ENSG00000222009	BTBD19	-	BTB domain containing 19	protein-coding	nan	1.325	nan	1.857	1.075	0.736	0.687	2.684	0.437	0.530	0.335	0.973	0.705	1.760	0.183	2.388	2.714	0.557	0.978	1.806	1.924	0.928	0.237	2.372	2.799	0.704	nan	nan	4.463	2.360	2.022	2.206	nan	0.617	0.640	2.473	3.045	1.686	0.994	0.265	0.651	0.112	0.409	0.687	0.973	0.355	1.943	0.653	0.546
4397	chr2	70120435	70128450	+	0	NA	intron (NR_037862, intron 3 of 6)	intron (NR_037862, intron 3 of 6)	3367	NM_006857	11017	Hs.54649	NM_006857	ENSG00000124380	SNRNP27	27K|RY1	small nuclear ribonucleoprotein U4/U6.U5 subunit 27	protein-coding	nan	nan	1.379	0.825	0.980	0.832	0.660	0.604	0.100	0.393	0.241	1.021	1.954	0.986	0.114	6.256	4.827	12.902	6.643	1.728	2.161	2.048	0.723	4.681	5.052	1.427	1.911	1.578	2.498	2.085	1.790	3.270	4.133	0.564	0.816	1.396	1.916	nan	0.530	0.355	0.640	0.071	0.314	0.660	1.021	0.171	0.428	0.616	0.248
2441	chr13	110370584	110384578	+	0	NA	Intergenic	MIR|SINE|MIR	-3040	NR_103846	101409253	Hs.578072	NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA	0.667	nan	1.130	0.629	1.361	0.482	0.420	0.075	0.034	0.203	0.106	0.402	0.938	0.046	0.057	0.584	0.437	0.751	1.721	0.587	0.616	2.210	0.460	0.107	0.148	0.043	0.051	0.671	0.630	0.413	0.227	1.631	1.968	0.181	0.199	0.274	0.349	0.193	0.139	0.122	0.560	0.048	0.298	0.420	0.402	0.048	3.457	0.848	0.035
5171	chr21	46540933	46548945	+	0	NA	intron (NM_001346688, intron 1 of 11)	AluJb|SINE|Alu	-27506	NM_001346687	104	Hs.474018	NM_001112	ENSG00000197381	ADARB1	ADAR2|DRABA2|DRADA2|RED1	adenosine deaminase, RNA specific B1	protein-coding	nan	0.950	1.734	0.343	0.345	0.160	2.295	0.161	0.160	0.019	0.095	0.045	1.943	0.028	0.061	0.650	0.675	0.313	0.576	0.736	0.977	nan	0.075	0.382	0.391	0.355	nan	0.163	0.155	10.634	8.485	0.399	0.674	3.062	3.909	4.041	8.043	1.112	0.880	0.063	9.076	0.712	0.137	2.295	0.045	3.009	0.431	0.177	3.405
7665	chr8	48647201	48652009	+	0	NA	3' UTR (NM_005195, exon 1 of 1)	3' UTR (NM_005195, exon 1 of 1)	1121	NM_005195	1052	Hs.440829	NM_005195	ENSG00000221869	CEBPD	C/EBP-delta|CELF|CRP3|NF-IL6-beta	CCAAT/enhancer binding protein delta	protein-coding	5.334	5.210	3.713	8.426	5.622	3.170	3.316	4.537	0.369	2.832	1.203	10.287	10.357	5.421	0.142	0.821	0.767	7.185	12.113	15.777	13.222	5.311	1.641	7.336	7.019	1.698	2.542	7.860	15.187	1.845	1.971	0.712	1.438	7.166	4.267	0.978	1.042	3.616	2.239	6.040	3.548	1.662	5.672	3.316	10.287	0.139	6.625	0.269	0.460
2414	chr13	102674271	102699572	+	0	NA	intron (NM_001321945, intron 2 of 5)	MER96B|DNA|hAT	11433	NR_039854	100616239		NR_039854	ENSG00000264482	MIR4705	-	microRNA 4705	ncRNA	0.840	1.006	0.854	0.489	1.295	0.709	2.283	0.059	0.090	0.082	0.121	2.021	9.123	0.026	0.087	0.640	0.310	0.153	0.228	1.852	1.868	3.286	1.062	0.093	0.072	0.221	nan	0.646	1.117	0.380	0.174	0.148	0.226	0.813	1.027	0.778	nan	0.313	0.204	7.896	1.739	0.328	0.340	2.283	2.021	0.023	0.040	0.035	0.175
4657	chr2	197844425	197854799	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-58157	NM_001321099	80055	Hs.229988	NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|SPG67	post-GPI attachment to proteins 1	protein-coding	1.495	nan	1.575	0.782	1.708	0.972	2.896	1.036	0.186	0.733	0.379	2.008	3.309	0.096	0.089	0.612	0.906	0.751	2.395	3.094	2.888	3.262	2.179	0.568	0.568	4.349	4.736	1.777	2.338	4.364	4.112	1.417	2.504	2.993	4.354	0.841	1.205	0.826	0.524	1.408	1.584	0.541	1.599	2.896	2.008	0.693	0.284	2.805	0.462
4423	chr2	86973151	86976732	+	0	NA	intron (NM_022780, intron 2 of 8)	intron (NM_022780, intron 2 of 8)	-26696	NM_001198954	100526767	Hs.591582	NM_001198954	ENSG00000249884	RNF103-CHMP3	RNF103-VPS24	RNF103-CHMP3 readthrough	protein-coding	nan	0.960	nan	1.906	0.870	0.492	0.707	0.622		0.446	0.163	1.101	2.060	0.476	0.112	6.782	8.625	3.048	3.852	0.582	0.524	2.526	0.817	9.327	9.542	0.573	0.553	1.109	0.479	0.450	0.605	15.580	11.465	0.662	1.518	0.637	4.577	0.620	0.462	0.882	1.434		1.415	0.707	1.101	0.133	0.143	3.574	0.211
2194	chr12	123847401	123851691	+	0	NA	promoter-TSS (NR_107039)	promoter-TSS (NR_107039)	-156	NR_107039	102466877		NR_107039	ENSG00000139697	MIR8072	hsa-mir-8072	microRNA 8072	ncRNA	4.664	2.938	2.793	4.111	4.110	2.370	3.151	2.909	0.342	2.546	1.250	3.509	8.304	6.085	0.265	4.569	5.427	5.689	9.072	6.408	6.074	nan	4.005	15.370	15.796	4.465	5.630	9.813	17.843	5.369	6.088	2.902	5.713	5.328	7.204	7.638	7.554	3.770	1.943	2.768	5.096	1.254	2.012	3.151	3.509	0.998	2.959	1.724	2.386
2285	chr13	41632993	41637553	+	0	NA	promoter-TSS (NM_007187)	promoter-TSS (NM_007187)	-424	NM_007187	11193	Hs.411300	NM_007187	ENSG00000120688	WBP4	FBP21	WW domain binding protein 4	protein-coding	6.332	4.403	6.543	5.435	4.348	1.935	1.556	3.951	0.351	2.357	1.325	7.021	13.597	6.749	0.202	12.002	14.820	5.311	8.037	13.445	10.659	11.072	5.181	8.511	9.337	6.599	8.016	4.216	6.926	8.968	10.197	6.215	12.831	5.300	4.848	10.773	10.744	2.691	1.807	4.445	6.029	0.876	3.723	1.556	7.021	0.638	1.712	4.921	3.432
3092	chr16	25266551	25271014	+	0	NA	promoter-TSS (NM_001012981)	promoter-TSS (NM_001012981)	73	NM_001012981	342357	Hs.513451	NM_001012981	ENSG00000155592	ZKSCAN2	ZNF694|ZSCAN31|ZSCAN34	zinc finger with KRAB and SCAN domains 2	protein-coding	4.179	2.524	nan	5.699	5.783	4.287	4.070	1.590	0.395	1.864	0.958	5.141	10.358	2.895	0.098	6.748	7.198	3.360	4.542	7.249	6.589	10.594	6.469	11.080	10.908	3.679	4.761	10.118	15.234	8.740	9.556	5.377	9.212	5.943	5.826	5.672	5.898	3.315	1.681	4.063	3.651	1.180	2.646	4.070	5.141	1.636	3.434	3.103	2.660
6425	chr5	121746357	121772224	+	0	NA	non-coding (NR_131761, exon 4 of 13)	non-coding (NR_131761, exon 4 of 13)	32506	NM_001308108	9627	Hs.426463	NM_005460	ENSG00000064692	SNCAIP	SYPH1|Sph1	synuclein alpha interacting protein	protein-coding	nan	0.875	1.627	0.164	0.490	0.265	0.134	0.079	0.100	0.104	0.102	0.256	1.422	0.054	0.116	0.443	0.341	0.443	nan	0.502	0.631	0.556	0.173	0.277	0.259	4.046	4.669	0.410	0.362	0.552	0.175	0.129	0.168	2.888	3.132	0.196	0.381	0.724	0.403	0.300	0.347	0.885	0.100	0.134	0.256	0.007	0.162	0.046	0.062
1135	chr10	71805372	71814734	+	0	NA	Intergenic	MIR|SINE|MIR	-2304	NM_018649	55506	Hs.499953	NM_018649	ENSG00000099284	H2AFY2	macroH2A2	H2A histone family member Y2	protein-coding	3.529	nan	4.725	0.271	3.216	1.598	1.211	0.081	0.085	1.332	0.740	3.229	2.693	2.092	0.148	4.787	5.022	9.140	7.660	3.669	3.811	5.053	1.622	2.507	2.678	0.079	0.228	4.599	nan	1.728	1.611	2.469	4.959	1.829	1.108	0.094	nan	1.383	0.974	0.991	0.797	0.164	1.164	1.211	3.229	0.426	0.044	1.482	0.028
4198	chr2	6896662	6913974	+	0	NA	intron (NR_038369, intron 1 of 5)	intron (NR_038369, intron 1 of 5)	5124	NR_038369	400941	Hs.446195	NM_001001695	ENSG00000205837	LINC00487	-	long intergenic non-protein coding RNA 487	ncRNA	0.650	0.530	0.845	0.365	0.482	0.237	0.272	0.077	0.074	0.224	0.164	0.331	1.506	0.038	0.106	0.758	1.023	0.811	1.474	0.778	0.603	4.432	1.647	0.064	0.067	2.048	2.633	1.480	1.717	1.170	1.185	0.114	0.144	0.178	0.116	0.368	0.616	0.374	0.423	0.103	0.257	0.038	0.228	0.272	0.331	0.286	0.211	0.034	0.163
96	chr1	15524907	15536690	+	0	NA	intron (NM_018022, intron 1 of 2)	AluSx|SINE|Alu	-32678	NM_001278502	727684	Hs.667584	NM_001278501		C1orf195	-	chromosome 1 open reading frame 195	protein-coding	0.971	0.879	nan	0.463	0.396	0.163	0.174	0.127	0.108	0.093	0.106	0.071	0.794	0.073	0.104	0.397	0.468	4.190	8.214	0.644	0.653	0.552	0.223	0.719	nan	0.506	nan	1.554	2.020	nan	0.208	1.602	2.109	0.075	0.159	0.625	1.679	0.624	0.452	0.047	0.113	0.032	0.087	0.174	0.071	0.141	0.034	1.582	0.408
6726	chr6	34190848	34217971	+	0	NA	promoter-TSS (NM_145903)	promoter-TSS (NM_145903)	-168	NM_001319079	3159	Hs.518805	NM_002131	ENSG00000137309	HMGA1	HMG-R|HMGA1A|HMGIY	high mobility group AT-hook 1	protein-coding	nan	1.585	nan	1.678	1.691	0.839	2.840	0.939	0.172	1.206	0.534	2.274	3.074	3.137	0.135	2.333	2.643	1.717	nan	nan	2.298	2.588	0.895	3.201	3.309	1.690	2.541	6.268	9.138	2.996	3.377	1.336	2.203	2.221	2.304	2.844	3.187	1.464	0.793	0.694	1.047	0.481	0.948	2.840	2.274	0.575	0.957	0.730	1.325
3836	chr18	55512826	55527262	+	0	NA	Intergenic	L1M5|LINE|L1	-49717	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding	nan	0.841	0.793	0.231	0.493	0.201	3.725	0.167	0.157	0.129	0.108	1.861	0.418	0.036	0.094	0.408	0.483	0.559	0.886	2.856	3.289	3.678	1.435	0.602	0.668	0.274	0.429	0.406	0.423	0.427	0.203	0.188	0.356	0.239	0.292	0.149	0.366	nan	1.444	0.344	0.826	0.046	0.099	3.725	1.861	0.040	0.042	0.038	0.059
2114	chr12	104349323	104361681	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4091	NM_003211	6996	Hs.584809	NM_003211	ENSG00000139372	TDG	hTDG	thymine DNA glycosylase	protein-coding	3.204	2.098	nan	2.783	3.127	1.543	2.349	2.148	0.418	1.520	0.981	2.940	5.693	3.126	0.161	3.780	3.396	4.113	5.469	5.361	5.593	5.622	2.566	9.131	9.851	3.137	3.901	5.685	7.899	6.547	6.233	2.689	4.027	4.325	4.569	3.451	4.405	3.843	1.950	2.733	2.599	0.732	1.201	2.349	2.940	1.031	1.545	1.148	1.364
5930	chr4	70499130	70516871	+	0	NA	intron (NM_001252274, intron 2 of 6)	intron (NM_001252274, intron 2 of 6)	-2640	NM_001105677	574537	Hs.225950	NM_001105677	ENSG00000271271	UGT2A2	-	UDP glucuronosyltransferase family 2 member A2	protein-coding	0.515	0.788	0.472	0.157	1.007	0.505	0.145	0.097	0.073	0.256	0.233	0.440	0.204	0.043	0.073	0.358	0.272	0.189	0.226	0.534	0.782	9.846	6.065	0.218	0.189	0.093	0.165	0.573	0.551	0.418	0.179	0.076	0.150	0.405	0.222	0.149	0.197	3.374	1.529	0.016	0.025	0.070	0.260	0.145	0.440	0.005	0.029	0.078	0.035
1396	chr11	44872270	44892598	+	0	NA	intron (NM_130783, intron 2 of 8)	intron (NM_130783, intron 2 of 8)	89325	NM_001318384	9537	Hs.554791	NM_006034	ENSG00000175274	TP53I11	PIG11	tumor protein p53 inducible protein 11	protein-coding	nan	0.798	1.955	0.052	0.304	0.150	0.278	0.229	0.103	0.186	0.199	0.070	0.558	0.107	0.092	1.730	3.704	0.316	0.725	0.652	0.620	0.318	0.130	0.146	0.115	1.079	1.850	0.057	0.147	1.224	1.086	0.519	0.739	0.194	0.350	0.469	nan	1.014	0.718	0.603	0.034	0.066	0.035	0.278	0.070	0.517	0.045	0.117	0.201
1760	chr12	1699040	1716038	+	0	NA	Intergenic	L1MB2|LINE|L1	-4208	NM_152441	144699	Hs.367956	NM_152441	ENSG00000171823	FBXL14	Fbl14	F-box and leucine rich repeat protein 14	protein-coding	1.847	nan	nan	1.987	1.341	0.631	1.473	3.830	0.639	0.866	0.593	1.606	2.994	1.197	0.136	0.995	1.567	1.916	3.861	nan	3.482	2.836	0.841	2.455	2.448	1.789	2.368	2.252	2.891	1.376	1.200	3.351	5.833	1.209	1.038	0.970	nan	0.836	0.609	0.531	1.304	0.158	1.700	1.473	1.606	0.791	0.562	2.410	0.376
391	chr1	87236898	87261971	+	0	NA	Intergenic	L1MB2|LINE|L1	79181	NM_001206653	51100	Hs.136309	NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like endophilin B1	protein-coding	1.111	nan	nan	1.066	0.834	0.501	0.444	3.047	0.179	0.430	0.271	2.185	2.755	0.065	0.119	0.374	0.231	0.237	0.432	2.198	1.962	4.119	1.220	0.407	0.382	1.056	1.551	7.352	6.074	0.678	0.386	0.228	0.221	0.938	0.984	0.385	1.034	2.209	1.193	1.140	0.849	0.183	0.222	0.444	2.185	0.117	0.717	0.039	0.133
2033	chr12	78138471	78147264	+	0	NA	Intergenic	Intergenic	-82202	NM_001024383	89795	Hs.655301	NM_014903	ENSG00000067798	NAV3	POMFIL1|STEERIN3|unc53H3	neuron navigator 3	protein-coding	nan	1.020	0.924	1.944	1.268	0.589	0.262	1.257	0.184	1.486	0.650	2.923	1.757	0.012	0.087	0.513	0.897	0.851	1.189	2.416	4.043	3.721	6.310	0.763	0.836	1.054	1.438	nan	6.860	1.153	0.843	0.297	0.373	0.321	0.360	0.583	1.300	nan	2.112	0.907	1.052	0.043	0.261	0.262	2.923	0.055	0.161	0.095	0.252
2676	chr14	75443778	75456140	+	0	NA	Intergenic	AluJb|SINE|Alu	-19653	NM_014239	8892	Hs.409137	NM_014239	ENSG00000119718	EIF2B2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B subunit beta	protein-coding	2.666	0.909	1.769	0.660	0.438	0.143	3.840	1.829	0.239	0.127	0.079	0.875	0.534	0.113	0.102	0.408	0.445	0.285	0.432	0.893	1.137	0.950	0.300	0.737	0.777	1.407	2.122	0.560	nan	2.128	2.134	0.291	0.343	0.617	0.727	0.490	0.867	1.907	nan	1.515	0.202	0.139	1.613	3.840	0.875	1.010	0.238	0.056	0.220
5821	chr4	2865378	2894645	+	0	NA	intron (NM_001286645, intron 3 of 17)	L2a|LINE|L2	34134	NM_001286645	118	Hs.183706	NM_001119	ENSG00000087274	ADD1	ADDA	adducin 1	protein-coding	1.132	0.743	nan	0.234	0.277	0.116	0.149	0.209	0.110	0.220	0.234	1.026	0.254	0.094	0.110	1.388	1.494	0.538	1.271	0.684	0.784	nan	0.240	0.608	0.671	0.452	0.655	0.829	0.857	1.251	0.836	0.681	1.375	0.135	0.193	1.477	3.733	nan	0.576	0.040	0.215	0.039	0.155	0.149	1.026	0.050	0.031	0.904	3.012
5596	chr3	149055972	149071600	+	0	NA	Intergenic	L1MC4a|LINE|L1	-12238	NM_138786	116441	Hs.22026	NM_138786	ENSG00000163762	TM4SF18	L6D	transmembrane 4 L six family member 18	protein-coding	0.963	nan	nan	2.079	1.003	0.556	0.198	0.747	0.184	1.360	1.037	1.494	0.909	0.035	0.070	0.226	0.268	0.489	1.044	0.902	1.195	nan	2.127	0.293	0.235	0.253	nan	2.651	nan	nan	0.228	0.278	0.372	1.238	1.524	0.310	0.451	1.930	1.310	0.110	0.249	0.244	0.025	0.198	1.494	0.025	2.187	0.092	0.119
180	chr1	31533865	31544693	+	0	NA	promoter-TSS (NM_014676)	promoter-TSS (NM_014676)	-715	NM_014676	9698	Hs.281707	NM_014676	ENSG00000134644	PUM1	HSPUM|PUMH|PUMH1|PUML1	pumilio RNA binding family member 1	protein-coding	3.302	nan	3.581	3.122	2.532	1.129	1.674	0.726	0.074	1.322	0.930	5.087	4.331	1.949	0.187	2.665	2.802	3.703	5.062	5.406	5.463	nan	1.639	8.208	8.389	2.814	3.830	3.079	5.237	nan	3.674	5.422	8.502	2.310	2.311	4.357	4.656	2.040	nan	1.661	1.302	0.326	1.388	1.674	5.087	0.558	1.154	2.467	0.953
1375	chr11	33881691	33900037	+	0	NA	intron (NM_001142315, intron 2 of 3)	CpG	507	NM_001142316	4005	Hs.34560	NM_005574	ENSG00000135363	LMO2	RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2	protein-coding	1.113	1.230	nan	0.354	1.094	0.620	0.708	0.429	0.114	1.408	0.595	0.255	2.559	0.094	0.092	2.271	3.501	1.707	0.989	0.865	0.978	0.268	0.112	0.441	0.368	1.469	2.131	0.376	0.448	0.580	0.441	4.023	5.411	0.403	0.321	0.275	nan	2.751	1.534	2.728	0.536	0.212	0.514	0.708	0.255	0.656	0.039	2.298	0.087
2907	chr15	64537926	64542449	+	0	NA	intron (NM_001329606, intron 4 of 11)	intron (NM_001329606, intron 4 of 11)	-84833	NM_000942	5479	Hs.434937	NM_000942	ENSG00000166794	PPIB	CYP-S1|CYPB|HEL-S-39|OI9|SCYLP	peptidylprolyl isomerase B	protein-coding	1.675	2.244	nan	2.839	3.027	1.590	0.788	1.093	0.035	2.466	1.040	4.012	1.723	0.194	0.072	0.402	0.249	1.089	3.463	0.765	0.940	4.716	5.398	0.458	0.467	4.325	5.330	2.566	8.561	1.154	0.609	0.281	0.395	8.295	13.542	2.050	4.386	1.886	1.423	0.148	0.060	1.006	0.242	0.788	4.012	0.474	1.094	0.043	0.983
4097	chr19	45293987	45313736	+	0	NA	TTS (NM_001130852)	TTS (NM_001130852)	-8455	NM_005581	4059	Hs.625725	NM_005581	ENSG00000187244	BCAM	AU|CD239|LU|MSK19	basal cell adhesion molecule (Lutheran blood group)	protein-coding	0.667	0.816	1.208	1.298	0.416	0.203	0.562	0.167	0.150	0.773	0.478	0.965	0.982	0.964	0.109	0.636	1.252	0.568	0.883	1.193	1.441	4.804	1.353	0.616	0.761	0.167	0.400	5.435	5.594	0.433	0.241	0.524	0.757	0.364	0.403	0.273	0.553	2.535	1.168	0.056	0.082	0.058	0.024	0.562	0.965	0.141	1.137	0.210	0.101
7914	chr8	125549073	125553186	+	0	NA	promoter-TSS (NM_005005)	promoter-TSS (NM_005005)	200	NM_001146160	83940	Hs.170568	NM_032026	ENSG00000147687	TATDN1	CDA11	TatD DNase domain containing 1	protein-coding	5.666	nan	nan	5.181	3.887	2.610	2.167	2.439	0.270	1.257	0.868	3.716	nan	2.265	0.040	4.154	3.606	4.678	7.053	6.094	5.945	9.420	3.343	21.072	22.525	3.867	4.920	4.646	6.387	6.667	6.650	3.578	5.538	4.031	5.635	4.464	5.795	3.515	2.107	1.918	3.003	0.784	1.384	2.167	3.716	0.946	3.871	1.724	2.283
8090	chr9	22330682	22346699	+	0	NA	Intergenic	Intergenic	-108150	NM_022160	63951	Hs.371976	NM_022160	ENSG00000176399	DMRTA1	DMO|DMRT4	DMRT like family A1	protein-coding	0.970	nan	nan	0.220	0.157	0.110	0.184	0.544	0.101	0.138	0.122	0.082	0.266	0.013	0.105	0.168	0.104	0.192	0.342	0.281	0.347	0.636	0.216	0.064	0.050	3.991	4.934	0.109	0.133	1.183	0.710	0.159	0.239	1.271	2.255	0.256	0.573	1.313	0.842	0.018	0.062	0.457	0.085	0.184	0.082		0.056	0.031	0.146
8273	chr9	128506242	128527260	+	0	NA	intron (NR_024123, intron 2 of 6)	intron (NR_024123, intron 2 of 6)	6273	NM_001134778	5090	Hs.428027	NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding	nan	nan	1.547	2.813	2.813	1.479	1.770	0.833	0.154	1.337	1.000	1.887	nan	1.002	0.128	0.172	0.195	0.568	0.760	3.191	2.805	2.588	1.141	0.862	0.834	1.683	nan	2.561	4.018	5.759	4.564	0.162	0.299	3.019	2.791	3.424	4.684	nan	1.071	1.611	2.501	0.829	1.075	1.770	1.887	0.521	1.507	0.043	1.532
4102	chr19	46217899	46234963	+	0	NA	intron (NM_001329633, intron 1 of 1)	AluJo|SINE|Alu	323	NM_001329634	23403	Hs.128702	NM_001080469	ENSG00000177051	FBXO46	20D7-FC4|FBXO34L|Fbx46	F-box protein 46	protein-coding	1.857	1.188	1.825	1.199	1.461	0.638	1.012	0.825	0.264	0.744	0.454	1.234	2.295	1.623	0.141	0.968	1.621	1.598	2.452	2.218	2.809	3.184	1.139	6.583	7.171	2.350	3.242	3.351	3.928	1.911	1.405	1.216	2.062	1.149	1.127	1.976	5.057	1.898	0.800	0.887	1.411	0.379	0.299	1.012	1.234	0.868	0.775	0.371	1.357
4323	chr2	46523364	46543289	+	0	NA	intron (NM_001430, intron 1 of 15)	intron (NM_001430, intron 1 of 15)	8785	NM_001430	2034	Hs.468410	NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.894	nan	0.974	2.011	1.543	0.830	0.374	1.224	0.274	0.622	0.205	0.300	1.549	0.088	0.090	0.267	0.207	0.491	1.045	nan	0.511	1.262	0.875	0.511	0.513	0.153	0.378	1.566	2.770	0.450	0.289	0.182	0.233	0.068	0.063	0.266	nan	nan	0.745	0.037	0.236	0.014	0.043	0.374	0.300	0.082	1.957	0.030	0.055
8264	chr9	126437841	126444356	+	0	NA	intron (NM_024820, intron 5 of 20)	intron (NM_024820, intron 5 of 20)	-193197	NR_106972	102465688		NR_106972	ENSG00000274932	MIR7150	hsa-mir-7150	microRNA 7150	ncRNA	nan	nan	1.616	2.636	1.848	0.717	0.935	0.115	0.099	0.818	0.506	0.997	nan	0.051	0.074	0.257	0.214	0.205	0.293	1.622	1.130	3.975	0.639	0.307	0.313	0.758	nan	1.978	2.546	0.719	0.538	0.266	0.395	2.082	2.224	0.904	1.348	nan	1.343	0.266	0.153	0.631	0.025	0.935	0.997	0.091	4.502	0.045	0.517
6688	chr6	27094170	27117874	+	0	NA	TTS (NM_080593)	TTS (NM_080593)	-1066	NM_003495	8294	Hs.248172	NM_003495	ENSG00000276180	HIST1H4I	H4/m|H4FM|H4M	histone cluster 1 H4 family member i	protein-coding	1.774	2.377	nan	4.872	3.854	1.895	1.480	2.128	0.374	1.200	0.625	4.500	nan	5.961	0.201	5.006	5.922	4.102	nan	7.519	4.702	nan	5.180	8.444	8.807	3.549	4.264	5.824	7.352	2.517	2.938	1.013	2.024	7.009	6.434	1.059	1.257	2.864	1.504	1.331	3.763	1.101	1.957	1.480	4.500	0.768	1.514	1.136	0.536
4661	chr2	200167115	200177852	+	0	NA	intron (NM_001172509, intron 10 of 10)	intron (NM_001172509, intron 10 of 10)	150336	NR_134967	23314	Hs.516617	NM_015265	ENSG00000119042	SATB2	GLSS	SATB homeobox 2	protein-coding	0.900	nan	0.887	1.692	4.464	2.150	1.524	0.136	0.149	0.762	0.545	3.885	1.807		0.082	1.017	0.900	0.283	0.361	8.228	7.764	1.979	0.455	0.408	0.510	1.149	1.445	4.325	5.052	1.173	1.354	0.451	0.694	0.925	1.256	1.076	2.628	1.889	0.935	0.069	1.795	0.265	1.018	1.524	3.885	0.358	1.716	0.425	0.439
1653	chr11	113421311	113441610	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-85459	NM_000795	1813	Hs.73893	NM_000795	ENSG00000149295	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding	0.755	1.585	1.349	0.187	0.312	0.126	0.598	0.100	0.088	0.147	0.142	0.572	0.590	0.054	0.112	8.085	nan	0.601	0.719	0.639	0.666	1.040	0.323	0.279	0.332	0.338	nan	0.537	0.584	0.795	0.681	1.904	2.758	1.198	1.122	0.563	1.723	0.645	0.639	0.221	0.149	0.359	0.121	0.598	0.572	0.091	0.033	1.380	0.243
1688	chr11	118488224	118514488	+	0	NA	intron (NM_001144758, intron 6 of 22)	intron (NM_001144758, intron 6 of 22)	-13362	NR_106773	102466719		NR_106773	ENSG00000019144	MIR6716	hsa-mir-6716	microRNA 6716	ncRNA	1.124	1.779	1.480	1.493	0.872	0.368	0.925	0.406	0.073	0.849	0.511	1.468	3.264	0.558	0.079	1.668	nan	1.211	2.206	2.651	2.780	2.519	0.654	1.282	1.343	1.839	nan	5.696	4.345	0.683	0.467	2.426	4.346	1.845	1.439	0.471	1.017	1.721	0.852	5.881	1.422	0.783	0.190	0.925	1.468	0.397	0.990	3.235	0.236
8085	chr9	21738495	21791744	+	0	NA	Intergenic	L1MEf|LINE|L1	-37516	NM_002451	4507	Hs.193268	NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding	0.591	nan	nan	0.081	0.216	0.120	0.124	0.323	0.075	0.080	0.089	0.049	0.253	3.295	0.142	0.175	0.085	0.297	0.292	0.293	0.347	0.181	0.105	0.069	0.083	0.187	0.331	0.128	0.132	0.345	0.178	0.135	0.208	0.102	0.124	0.197	0.449	0.827	0.877	0.010	0.054	0.014	0.033	0.124	0.049	0.004	0.009	0.060	0.090
7481	chr7	129983336	130023307	+	0	NA	exon (NM_080385, exon 10 of 13)	exon (NM_080385, exon 10 of 13)	3647	NR_133928	105375504	Hs.436058	NR_133928		LOC105375504	-	uncharacterized LOC105375504	ncRNA	nan	nan	nan	1.145	3.884	2.178	3.721	1.698	0.265	1.770	1.024	6.472	3.646	0.120	0.150	0.677	0.799	0.387	1.456	6.669	7.622	nan	1.798	0.395	0.392	0.747	nan	2.582	3.133	nan	1.639	0.352	0.585	2.118	1.937	0.435	0.747	3.645	nan	7.562	4.487	0.888	1.229	3.721	6.472	0.552	1.979	0.281	0.124
3311	chr17	17776334	17796507	+	0	NA	intron (NM_001288787, intron 4 of 13)	intron (NM_001288787, intron 4 of 13)	-46095	NM_004176	6720	Hs.592123	NM_004176	ENSG00000072310	SREBF1	SREBP-1c|SREBP1|SREBP1a|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	1.481	1.335	1.670	0.261	0.518	0.288	0.452	0.430	0.096	0.217	0.134	0.192	1.091	0.060	0.040	0.741	1.748	0.315	nan	0.626	0.759	0.949	0.390	0.266	0.267	0.448	0.845	1.356	1.704	nan	1.398	0.282	0.421	0.297	0.315	0.718	1.359	0.516	0.362	2.826	0.881	0.114	0.780	0.452	0.192	0.240	0.399	0.089	0.683
1458	chr11	64000636	64015486	+	0	NA	promoter-TSS (NM_001135208)	promoter-TSS (NM_001135208)	-352	NM_004470	2286	Hs.227729	NM_004470	ENSG00000173486	FKBP2	FKBP-13|PPIase	FK506 binding protein 2	protein-coding	nan	3.111	2.173	6.109	3.665	1.981	2.939	1.255	0.207	3.006	1.111	4.941	10.449	3.753	0.124	3.773	5.947	2.761	4.615	5.716	5.318	6.902	2.679	6.994	7.320	2.153	3.215	9.147	11.571	3.127	3.184	1.947	3.901	4.125	4.475	1.932	2.936	2.754	1.403	3.385	4.121	1.010	2.037	2.939	4.941	0.981	3.567	2.280	1.084
2958	chr15	75742393	75749092	+	0	NA	intron (NM_001145357, intron 1 of 20)	CpG-8103	-1655	NM_001145358	25942	Hs.513039	NM_015477	ENSG00000169375	SIN3A	WITKOS	SIN3 transcription regulator family member A	protein-coding	5.151	4.085	4.654	4.839	5.853	2.785	3.564	4.088	0.429	2.741	0.973	5.255	19.330	5.824	0.107	4.377	4.938	6.607	8.209	5.590	4.235	6.109	2.209	8.640	8.537	3.278	4.476	6.041	10.487	7.222	8.684	1.572	3.476	3.444	3.069	4.832	6.325	1.870	1.068	2.646	3.977	0.910	2.835	3.564	5.255	2.150	3.771	2.498	1.854
7953	chr8	139223745	139258186	+	0	NA	intron (NM_015912, intron 7 of 19)	intron (NM_015912, intron 7 of 19)	268100	NM_015912	51059	Hs.126024	NM_015912	ENSG00000147724	FAM135B	C8ORFK32	family with sequence similarity 135 member B	protein-coding	nan	0.748	1.255	0.107	0.232	0.168	0.142	0.089	0.094	0.081	0.068	0.049	0.478	0.041	0.088	0.357	0.333	0.122	0.115	0.412	0.493	0.828	0.493	nan	0.164	0.306	0.487	0.153	0.207	0.591	0.327	0.272	0.291	0.121	0.151	0.977	3.641	0.630	0.529	0.027	0.111	0.022	0.097	0.142	0.049	0.034	0.118	0.055	1.375
1336	chr11	19834895	19852098	+	0	NA	intron (NM_182964, intron 1 of 37)	MIRb|SINE|MIR	-61867	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	ncRNA	0.748	nan	2.560	1.494	0.366	0.234	0.327	0.331	0.169	0.174	0.111	0.111	5.331	0.025	0.077	nan	1.363	0.484	0.777	1.208	1.094	0.983	0.375	0.276	0.390	1.216	nan	1.600	2.120	1.248	1.265	0.671	1.311	0.151	0.170	0.144	0.238	1.120	nan	0.649	0.947	0.105	0.732	0.327	0.111	0.310	0.094	0.566	0.102
7278	chr7	48122492	48139082	+	0	NA	intron (NM_001287428, intron 3 of 6)	intron (NM_001287428, intron 3 of 6)	1936	NM_001287430	7378	Hs.488240	NM_003364	ENSG00000183696	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding	1.238	1.451	nan	0.126	0.629	0.366	0.224	2.629	0.700	0.248	0.175	0.180	1.675	4.869	0.210	0.303	0.204	0.889	1.708	0.738	0.726	0.494	0.075	0.469	0.436	0.200	0.337	0.580	0.970	0.594	0.479	0.176	0.215	0.202	0.392	0.658	1.121	0.434	0.494	0.101	0.059	0.052	0.607	0.224	0.180	0.174	0.707	0.041	0.307
3260	chr17	7252107	7260163	+	0	NA	5' UTR (NM_001002914, exon 1 of 1)	5' UTR (NM_001002914, exon 1 of 1)	927	NM_001002914	147040	Hs.592112	NM_001002914	ENSG00000213859	KCTD11	C17orf36|KCASH1|REN|REN/KCTD11	potassium channel tetramerization domain containing 11	protein-coding	1.340	1.027	0.962	0.602	0.973	0.609	1.129	0.983	0.299	0.159	0.159	0.644	1.931	16.766	0.525	0.535	1.064	1.530	3.254	2.084	1.599	1.718	0.623	0.583	0.579	0.657	1.257	1.268	1.495	0.723	0.547	0.447	0.888	0.155	0.159	0.587	1.091	0.382	0.322	0.669	0.598	0.047	0.128	1.129	0.644	0.267	1.811	0.235	0.293
8328	chr9	138088438	138117970	+	0	NA	Intergenic	MER52C|LTR|ERV1	29749	NR_046107	401557	Hs.640138	NR_046107		LOC401557	-	uncharacterized LOC401557	ncRNA	nan	0.675	0.456	0.056	0.298	0.158	0.091	0.105	0.104	0.052	0.068	0.049	1.601	0.048	0.067	0.380	0.739	0.085	0.121	0.243	0.294	nan	0.043	0.081	0.065	0.321	0.561	0.112	0.120	0.923	0.836	0.320	0.537	0.241	0.292	0.243	0.354	0.228	0.302	5.930	0.211	0.032	0.030	0.091	0.049	0.522	0.218	0.296	0.033
6221	chr5	32250175	32257494	+	0	NA	intron (NM_001040446, intron 8 of 15)	AluJr|SINE|Alu	59280	NM_001040446	54545	Hs.481836	NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding	1.430	1.747	6.638	0.333	0.523	0.219	0.367	0.446	0.160	0.881	0.588	0.252	1.053	0.088	0.126	0.739	1.150	0.816	1.960	0.547	0.715	2.094	0.852	0.290	0.412	1.616	2.278	0.453	0.635	1.415	0.962	0.521	0.810	6.669	7.761	0.723	1.781	2.244	1.374	0.160	0.421	2.298	0.099	0.367	0.252	0.188	0.041	0.433	0.425
3036	chr16	4287475	4312272	+	0	NA	intron (NR_039999, intron 2 of 2)	intron (NR_039999, intron 2 of 2)	3917	NR_039999	100507501	Hs.632979	NR_039999	ENSG00000262468	LINC01569	-	long intergenic non-protein coding RNA 1569	ncRNA	1.296	nan	1.179	2.883	2.090	1.234	1.376	0.185	0.092	0.601	0.244	3.086	2.216	0.292	0.088	2.215	2.195	0.619	0.668	3.081	2.840	nan	2.396	2.944	2.742	0.626	nan	3.050	3.795	3.271	3.268	3.172	4.365	0.495	0.378	1.619	2.880	2.488	1.254	1.356	1.358	0.084	0.253	1.376	3.086	0.291	0.607	3.612	1.043
7364	chr7	82292263	82308480	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-227249	NM_001302890	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding	1.169	0.881	1.209	0.097	0.367	0.197	0.222	0.161	0.100	0.250	0.174	0.184	0.561	0.135	0.176	0.419	0.252	0.236	0.327	0.377	0.426	1.416	0.393	0.121	0.112	4.249	4.407	0.521	0.445	1.032	0.827	0.157	0.323	0.889	0.758	0.443	nan	0.665	0.592	0.303	0.116	0.210	0.074	0.222	0.184	0.036	0.050	0.031	0.212
4137	chr19	50304673	50333237	+	0	NA	Intergenic	AluSx|SINE|Alu	-2388	NM_001171937	80199	Hs.288800	NM_025129	ENSG00000010361	FUZ	FY|NTD	fuzzy planar cell polarity protein	protein-coding	2.508	1.445	1.598	3.015	4.418	2.529	1.239	0.640	0.202	0.902	0.517	4.073	3.657	1.770	0.149	1.862	3.054	1.103	1.999	6.867	6.595	5.657	3.022	4.933	5.205	2.225	2.897	5.547	8.041	2.982	2.924	1.454	1.947	1.966	1.596	4.480	5.610	3.289	1.825	2.818	6.181	0.326	1.521	1.239	4.073	0.574	1.009	1.043	1.989
6140	chr5	3302133	3327430	+	0	NA	Intergenic	L2c|LINE|L2	136832	NR_104617	102467074	Hs.575250	NR_104617	ENSG00000249808	LINC01377	-	long intergenic non-protein coding RNA 1377	ncRNA	0.373	0.684	0.984	0.087	0.589	0.291	1.311	0.175	0.137	0.124	0.155	1.867	0.757	0.026	0.096	0.827	1.211	3.121	nan	2.233	1.940	0.112	0.081	0.047	0.050	0.157	0.292	nan	0.136	nan	1.750	0.567	1.091	0.068	0.088	0.083	0.098	0.223	nan	0.022	0.144	0.015	0.082	1.311	1.867	0.431	0.069	0.723	0.029
7405	chr7	99693552	99700858	+	0	NA	intron (NM_005916, intron 3 of 14)	intron (NM_005916, intron 3 of 14)	1198	NM_182776	4176	Hs.438720	NM_005916	ENSG00000166508	MCM7	CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146|PPP1R104	minichromosome maintenance complex component 7	protein-coding	nan	2.085	nan	5.637	6.214	3.520	3.550	2.055	0.285	3.524	1.251	4.498	8.315	6.072	0.226	7.250	6.225	5.183	7.390	9.394	10.608	5.826	4.648	10.657	10.662	2.606	3.923	6.287	9.845	6.458	6.999	5.242	7.557	6.129	7.177	7.330	nan	4.363	2.088	3.726	4.677	1.722	3.022	3.550	4.498	1.174	1.789	2.302	2.029
4806	chr20	1856148	1883466	+	0	NA	Intergenic	Intergenic	-5006	NM_001330728	140885	Hs.581021	NM_080792	ENSG00000198053	SIRPA	BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP	signal regulatory protein alpha	protein-coding	0.665	1.649	0.467	0.112	0.553	0.305	0.305	0.348	0.096	0.058	0.064	0.341	1.097	0.488	0.058	4.039	6.187	0.746	0.725	0.251	0.308	0.309	0.131	0.195	0.218	0.817	1.208	0.195	0.254	0.749	0.519	1.951	3.002	0.923	1.294	0.127	0.174	0.220	0.251	0.026	0.043	0.129	0.038	0.305	0.341	0.165	0.047	1.249	0.049
8325	chr9	137585120	137602740	+	0	NA	intron (NM_001278074, intron 4 of 65)	intron (NM_001278074, intron 4 of 65)	-49241	NR_138049	414316	Hs.571561	NR_138049		COL5A1-AS1	C9orf104|bA54A22.4	COL5A1 antisense RNA 1	ncRNA	nan	1.286	1.453	0.035	0.677	0.385	0.094	0.373	0.201	0.088	0.077	0.136	3.772	0.049	0.065	0.260	0.396	0.174	0.293	0.286	0.262	nan	0.051	0.059	0.051	0.746	0.932	0.137	0.165	2.626	2.497	0.203	0.357	1.500	1.549	1.483	2.790	0.319	0.355	3.888	0.086	0.648	0.046	0.094	0.136	1.080	0.052	0.332	1.509
3413	chr17	41379647	41401420	+	0	NA	Intergenic	MER39B|LTR|ERV1	-9471	NR_047479	100874261	Hs.546898	NR_047479	ENSG00000236383	LINC00854	TMEM106A-AS1	long intergenic non-protein coding RNA 854	ncRNA	2.729	2.902	nan	1.813	2.202	1.189	1.147	0.726	0.414	1.180	0.724	0.699	3.241	0.797	0.266	5.965	5.728	2.435	3.718	3.503	nan	2.250	1.647	5.980	6.746	0.883	1.505	1.483	nan	3.667	2.576	2.340	2.712	1.156	1.390	2.782	3.582	3.121	1.867	1.797	1.990	0.157	0.665	1.147	0.699	0.785	1.239	0.632	0.646
6385	chr5	97495677	97502396	+	0	NA	Intergenic	L1MA7|LINE|L1	-605963	NM_001012761	285704	Hs.526902	NM_173670	ENSG00000174136	RGMB	DRAGON	repulsive guidance molecule family member b	protein-coding	nan	1.050	0.475	0.051	0.184	0.145	0.210	0.112	0.088	0.069	0.072	0.053	0.151	0.048	0.160	0.239	0.191	9.682	2.471	0.113	0.137	0.071	0.045	0.157	0.127	0.321	0.401	0.146	0.196	0.460	0.187	0.023	0.138	0.617	0.255	0.184	nan	0.146	0.186		0.210	0.099	0.072	0.210	0.053	0.044	0.045	0.015	0.074
875	chr1	219740285	219752379	+	0	NA	Intergenic	L1MA8|LINE|L1	-15666	NR_135822	102723886	Hs.525963	NR_135822		LOC102723886	-	uncharacterized LOC102723886	ncRNA	1.334	1.191	2.236	0.710	2.339	0.967	0.603	0.285	0.054	0.944	0.515	0.050	nan	0.072	0.160	0.448	0.356	0.397	0.701	0.615	0.590	nan	1.517	0.387	0.390	0.207	nan	1.120	0.910	0.560	0.287	0.104	0.191	2.948	3.144	0.325	0.594	3.013	1.381	0.009	0.139	0.921	0.773	0.603	0.050	0.033	0.788	0.049	0.204
8255	chr9	121211482	121223711	+	0	NA	Intergenic	MIR|SINE|MIR	751143	NM_138554	7099	Hs.174312	NM_003266	ENSG00000136869	TLR4	ARMD10|CD284|TLR-4|TOLL	toll like receptor 4	protein-coding	nan	nan	0.922	0.287	0.285	0.097	0.137	0.098	0.066	1.253	0.660	0.059	nan	0.014	0.081	0.181	0.141	0.383	0.227	0.290	0.453	0.084	0.079	0.106	0.166	0.310	nan	0.355	0.348	0.611	0.304	0.032	0.108	1.123	0.726	0.263	0.302	nan	1.781	0.018	0.051	0.210	0.469	0.137	0.059	0.107	0.100	0.024	0.126
1580	chr11	93006376	93023189	+	0	NA	Intergenic	L1MA4A|LINE|L1	-49101	NM_181645	159989	Hs.436625	NM_181645	ENSG00000165325	DEUP1	CCDC67	deuterosome assembly protein 1	protein-coding	0.677	nan	0.591	0.270	0.266	0.096	0.167	0.071	0.048	0.397	0.212	0.334	2.318	0.067	0.105	0.673	0.434	0.222	nan	0.867	0.848	0.183	0.064	0.363	0.480	0.232	0.400	1.014	2.250	0.284	0.147	0.229	0.364	0.933	1.352	0.224	nan	0.717	0.481	4.221	0.391	0.407	0.123	0.167	0.334	0.012	0.265	0.141	0.118
3274	chr17	8802253	8814801	+	0	NA	intron (NM_014308, intron 4 of 18)	MARNA|DNA|TcMar-Mariner	7307	NM_014308	23533	Hs.278901	NM_014308	ENSG00000141506	PIK3R5	F730038I15Rik|FOAP-2|P101-PI3K|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.555	0.435	0.508	0.042	0.186	0.115	0.123	0.048	0.064	0.025	0.032	0.019	0.227	0.122	0.178	1.708	2.307	9.756	2.377	0.179	0.265	0.287	0.138	0.915	1.074	0.099	0.185	0.174	0.214	0.232	0.086	0.463	0.850	0.107	0.060	0.183	0.240	0.179	0.174	0.005	0.043		0.019	0.123	0.019	0.008	0.033	0.242	0.010
2146	chr12	113229263	113240163	+	0	NA	intron (NM_001347955, intron 2 of 20)	AluSz|SINE|Alu	5164	NM_001347954	22895	Hs.21239	NM_014954	ENSG00000089169	RPH3A	-	rabphilin 3A	protein-coding	nan	nan	0.573	0.040	0.290	0.206	0.722	0.076	0.029	0.071	0.129	0.099	0.701	0.060	0.120	0.307	0.187	0.087	0.152	nan	nan	nan	0.345	0.203	0.283	3.439	4.724	nan	nan	0.452	0.188	0.226	0.311	0.464	0.875	0.204	0.270	nan	0.582	0.036	0.114	0.129	0.145	0.722	0.099	0.145	0.028	0.100	0.044
2419	chr13	103239944	103254711	+	0	NA	Intergenic	AluSx|SINE|Alu	-1959	NM_001330588	7174	Hs.432424	NM_003291	ENSG00000134900	TPP2	TPP-2|TPP-II|TPPII	tripeptidyl peptidase 2	protein-coding	2.695	1.978	2.035	2.550	1.516	0.563	2.186	1.344	0.119	0.881	0.460	1.461	3.250	0.927	0.079	2.955	4.012	1.945	3.127	2.785	2.061	4.543	1.942	2.306	2.332	1.283	nan	2.024	3.186	3.218	3.471	1.374	2.404	2.135	2.532	4.053	7.138	0.587	0.316	1.471	2.282	0.342	1.847	2.186	1.461	0.540	1.224	0.869	2.323
5541	chr3	129343497	129362733	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-27533	NM_015103	23129	Hs.301685	NM_015103	ENSG00000004399	PLXND1	PLEXD1	plexin D1	protein-coding	2.141	nan	1.260	0.792	0.670	0.428	0.333	0.824	0.432	0.252	0.253	0.585	1.088	0.411	0.079	0.520	0.552	0.331	0.459	0.768	0.814	2.270	0.547	1.150	1.099	0.410	nan	2.275	2.766	1.851	2.096	0.199	0.248	0.373	0.347	2.411	5.421	0.728	0.617	0.574	0.671	0.125	0.203	0.333	0.585	0.753	0.888	0.047	1.382
5544	chr3	132758158	132766595	+	0	NA	intron (NM_023943, intron 1 of 5)	intron (NM_023943, intron 1 of 5)	5244	NM_023943	66000	Hs.191616	NM_023943	ENSG00000144868	TMEM108	CT124	transmembrane protein 108	protein-coding	1.012	nan	nan	0.093	2.145	1.224	0.594	0.885	0.228	0.380	0.264	1.119	0.580	0.039	0.107	0.552	0.542	8.514	5.359	1.025	1.312	1.727	0.781	2.422	2.575	1.347	2.346	0.400	0.620	nan	0.324	0.177	0.263	0.245	0.240	0.537	1.922	1.848	0.961	0.146	0.205	0.104	0.066	0.594	1.119	0.105	0.048	0.070	0.352
5742	chr3	183185381	183198662	+	0	NA	Intergenic	Intergenic	26582	NR_038301	100505687	Hs.551751	NR_038301	ENSG00000240024	LINC00888	-	long intergenic non-protein coding RNA 888	ncRNA	1.140	1.426	0.987	0.669	1.100	0.382	0.270	0.164	0.133	1.816	0.906	0.264	3.429	0.065	0.082	0.289	0.497	0.310	0.545	2.135	1.999	7.486	2.127	0.509	0.589	0.481	0.713	0.619	1.042	1.016	0.650	0.283	0.344	1.306	1.434	0.439	0.881	2.673	1.516	0.863	0.592	0.223	0.197	0.270	0.264	0.313	0.084	0.111	0.381
5113	chr21	37615653	37635971	+	0	NA	intron (NM_005128, intron 22 of 36)	AluSx|SINE|Alu	-66675	NM_001320445	23515	Hs.421150	NM_015358	ENSG00000159256	MORC3	NXP2|ZCW5|ZCWCC3	MORC family CW-type zinc finger 3	protein-coding	1.092	0.702	1.486	0.095	0.299	0.222	0.240	0.214	0.140	0.131	0.110	0.206	0.620	0.118	0.082	1.937	1.951	2.045	1.274	0.447	0.499	0.313	0.135	7.996	8.476	0.419	0.710	0.471	0.498	1.571	1.100	0.839	1.708	0.163	0.216	0.612	1.249	nan	0.540	0.123	0.231	0.009	0.247	0.240	0.206	0.081	0.090	0.767	0.584
3802	chr18	47964954	47970067	+	0	NA	Intergenic	Intergenic	66118	NM_001039535	220134	Hs.134726	NM_145060	ENSG00000154839	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding	nan	2.446	0.807	0.212	0.227	0.259	8.843	0.015	0.064	0.124	0.062	0.164	4.700	0.122	0.073	0.444	0.462	0.162	0.406	0.629	0.673	3.044	1.114	0.109	0.175	0.087	0.276	0.825	0.667	0.513	0.204	0.218	0.394	1.260	0.707	0.570	nan	5.046	2.557	1.151	0.296	0.074	0.171	8.843	0.164	0.019	0.040	0.058	0.510
8284	chr9	130473352	130490187	+	0	NA	intron (NM_144965, intron 4 of 13)	intron (NM_144965, intron 4 of 13)	3426	NM_144965	158248	Hs.642748	NM_144965	ENSG00000167094	TTC16	-	tetratricopeptide repeat domain 16	protein-coding	nan	1.114	2.551	1.185	0.545	0.229	0.576	0.266	0.057	0.698	0.382	0.523	1.444	0.361	0.089	0.418	0.580	0.523	0.960	1.122	1.126	nan	0.652	1.226	1.348	0.497	0.738	1.850	3.342	2.048	2.203	0.250	0.293	2.513	1.867	0.386	0.558	2.473	1.236	0.245	0.270	0.820	0.179	0.576	0.523	1.108	1.081	0.030	0.155
4811	chr20	3019978	3032646	+	0	NA	promoter-TSS (NM_030811)	promoter-TSS (NM_030811)	-363	NM_030811	64949	Hs.18946	NM_030811	ENSG00000125901	MRPS26	C20orf193|GI008|MRP-S13|MRP-S26|MRPS13|NY-BR-87|RPMS13|dJ534B8.3	mitochondrial ribosomal protein S26	protein-coding	1.792	2.904	1.961	2.430	1.310	0.871	1.131	0.443	0.141	1.140	0.466	1.833	3.567	0.407	0.070	2.480	3.179	1.248	1.679	3.484	3.120	3.774	1.590	2.480	2.607	1.547	2.101	9.639	10.901	2.159	2.220	1.235	2.344	1.628	1.049	1.325	1.641	1.787	0.874	1.069	3.158	0.208	0.385	1.131	1.833	0.558	1.467	0.766	0.653
3004	chr15	99384470	99451474	+	0	NA	intron (NM_000875, intron 2 of 20)	intron (NM_000875, intron 2 of 20)	90317	NR_039864	100616432		NR_039864	ENSG00000264480	MIR4714	-	microRNA 4714	ncRNA	nan	nan	nan	0.388	0.323	0.203	0.770	0.918	0.199	0.448	0.295	0.480	1.240	6.013	0.181	1.183	1.236	1.011	1.521	0.613	0.743	nan	0.142	2.457	2.554	1.437	2.047	0.546	0.624	nan	1.129	0.851	1.110	0.372	0.568	0.558	nan	0.633	0.484	0.108	0.670	0.047	0.194	0.770	0.480	0.246	1.355	0.634	0.266
6867	chr6	88867211	88877439	+	0	NA	intron (NM_001160226, intron 1 of 2)	intron (NM_001160226, intron 1 of 2)	3442	NM_001160259	1268	Hs.75110	NM_016083	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1	protein-coding	2.622	1.365	nan	0.601	0.508	0.234	0.922	0.117	0.063	0.322	0.341	1.826	2.800	0.105	0.138	5.507	6.890	3.741	3.548	3.029	1.892	0.791	0.244	0.953	0.909	4.096	5.010	1.402	3.083	1.166	1.078	3.322	4.911	1.293	0.570	0.275	0.494	0.820	0.685	0.163	0.157	0.358	2.378	0.922	1.826	0.417	0.179	1.468	0.073
3676	chr18	19191367	19194899	+	0	NA	intron (NM_006938, intron 1 of 3)	intron (NM_006938, intron 1 of 3)	903	NM_006938	6632	Hs.464734	NM_006938	ENSG00000167088	SNRPD1	HsT2456|SMD1|SNRPD|Sm-D1	small nuclear ribonucleoprotein D1 polypeptide	protein-coding	5.153	3.669	3.160	6.850	5.414	3.400	10.583	2.466	0.230	2.387	1.354	5.549	8.457	3.444	0.180	7.969	5.824	5.436	9.154	10.021	10.864	15.054	9.881	13.495	13.184	4.025	5.169	6.449	9.514	7.733	9.087	2.957	4.984	11.484	12.664	6.210	4.539	5.875	3.075	2.972	2.310	2.104	2.634	10.583	5.549	1.522	2.761	1.351	2.351
7303	chr7	61967005	61981369	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	790247	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo	nan	nan	nan	17.934	29.452	20.659	22.244	21.399	59.552	20.876	26.401	15.015	27.728	16.203	20.682	21.504	13.816	15.869	21.055	16.761	18.539	8.520	7.930	14.557	14.586	12.504	13.890	12.040	10.327	18.702	8.413	13.516	17.462	7.284	10.145	12.744	12.834	9.624	12.333	5.633	14.439	7.394	7.489	22.244	15.015	4.255	10.971	10.233	8.001
3939	chr19	3022487	3077232	+	0	NA	Intergenic	AluY|SINE|Alu	-2226	NM_001144761	7089	Hs.332173	NM_003260	ENSG00000065717	TLE2	ESG|ESG2|GRG2	transducin like enhancer of split 2	protein-coding	1.424	1.698	2.179	1.318	2.249	1.181	1.731	0.431	0.184	0.827	0.621	3.099	3.273	0.776	0.073	0.570	1.105	0.946	1.437	3.300	3.381	1.590	0.560	0.643	0.657	1.884	2.484	2.511	nan	2.363	2.024	0.528	0.677	1.854	1.385	0.783	1.767	2.100	1.019	1.882	1.712	0.634	0.317	1.731	3.099	0.606	1.445	0.531	0.489
4272	chr2	27069097	27102189	+	0	NA	intron (NM_001253724, intron 1 of 12)	intron (NM_001253724, intron 1 of 12)	14351	NM_001253724	56896	Hs.299315	NM_020134	ENSG00000157851	DPYSL5	CRAM|CRMP-5|CRMP5|Ulip6	dihydropyrimidinase like 5	protein-coding	1.796	0.930	0.784	1.131	0.820	0.501	1.170	0.075	0.135	0.503	0.319	1.187	2.817	0.263	0.139	3.611	3.289	0.560	0.772	2.118	1.807	2.094	0.869	0.316	0.317	0.968	1.434	1.546	nan	0.837	0.700	0.625	1.017	0.462	0.447	0.950	1.446	1.259	0.869	0.874	1.098	0.093	0.698	1.170	1.187	0.318	0.340	0.248	0.385
51	chr1	7352741	7364750	+	0	NA	intron (NM_015215, intron 5 of 22)	intron (NM_015215, intron 5 of 22)	-472584	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle associated membrane protein 3	protein-coding	1.003	nan	0.748	0.635	0.574	0.360	0.956	0.768	0.064	0.234	0.173	1.035	6.857	0.063	0.107	0.299	0.376	0.184	0.345	3.211	3.002	0.828	0.279	0.187	0.214	0.204	nan	nan	1.827	nan	0.374	0.401	0.492	0.216	0.443	0.313	0.735	0.856	0.700	1.204	1.606	0.078	0.257	0.956	1.035	0.105	0.383	0.162	0.092
456	chr1	114297184	114314843	+	0	NA	non-coding (NR_130896, exon 8 of 8)	non-coding (NR_130896, exon 8 of 8)	-3503	NM_001323042	10745	Hs.655824	NM_006608	ENSG00000116793	PHTF1	PHTF	putative homeodomain transcription factor 1	protein-coding	nan	1.437	1.306	1.636	1.617	0.734	0.882	1.087	0.256	0.599	0.330	1.232	3.436	1.424	0.150	0.708	0.836	1.042	1.384	2.759	nan	2.683	1.182	1.465	1.500	5.439	6.199	2.739	3.479	7.360	5.627	0.578	0.858	0.732	0.670	2.704	4.931	2.232	1.094	1.347	1.818	0.160	0.889	0.882	1.232	0.857	0.707	0.224	1.082
1822	chr12	10763038	10767643	+	0	NA	5' UTR (NM_001300739, exon 1 of 5)	5' UTR (NM_001300739, exon 1 of 5)	237	NM_001300739	55110	Hs.104650	NM_018048	ENSG00000111196	MAGOHB	MGN2|mago|magoh	mago homolog B, exon junction complex core component	protein-coding	4.478	2.267	3.002	10.294	3.076	1.675	2.103	1.013		2.216	1.340	2.990	7.387	2.944	0.103	2.736	2.972	5.636	8.821	nan	7.329	12.542	7.056	17.953	18.135	3.367	4.140	6.651	10.902	4.726	4.642	3.412	4.986	2.410	3.037	7.658	5.501	3.541	1.439	2.956	2.367	0.291	0.724	2.103	2.990	0.546	0.968	1.197	1.772
7533	chr7	148841332	148846036	+	0	NA	promoter-TSS (NM_170686)	promoter-TSS (NM_170686)	-876	NM_170686	57541	Hs.632032	NM_020781	ENSG00000197024	ZNF398	P51|P71|ZER6	zinc finger protein 398	protein-coding	3.467	2.848	2.910	5.709	3.640	2.185	4.147	1.544	0.239	2.393	1.406	7.075	9.916	5.259	0.244	11.747	11.865	7.408	13.304	4.285	4.264	8.072	2.895	16.932	17.443	2.243	3.058	6.102	8.437	5.229	5.452	8.265	10.947	6.445	5.137	6.553	7.681	4.244	nan	2.111	4.010	1.217	0.894	4.147	7.075	1.171	3.475	5.033	1.787
7093	chr6	164191946	164203972	+	0	NA	Intergenic	Intergenic	-105443	NR_134620	102724152	Hs.738183	NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA	0.588	nan	1.602	0.830	0.185	0.100	0.428	0.106	0.019	0.090	0.125	0.190	0.315	0.063	0.150	0.376	0.281	0.187	0.265	0.494	0.556	11.429	4.505	0.185	0.246	0.115	0.184	0.173	0.220	nan	0.505	0.153	0.211	0.544	0.574	0.314	0.495	1.437	0.877	0.009	0.089	0.064	0.033	0.428	0.190	0.016	0.135	0.042	0.050
6693	chr6	29715779	29728998	+	0	NA	Intergenic	AluSq|SINE|Alu	-3463	NR_001590	340198	Hs.450189	NR_001590	ENSG00000235821	IFITM4P	dJ377H14.5	interferon induced transmembrane protein 4 pseudogene	pseudo	0.700	1.169	nan	0.293	0.351	0.231	0.204	1.024	0.134	0.355	0.354	0.154	nan	0.617	0.121	0.256	0.175	0.599	nan	0.265	0.301	nan	1.960	0.132	0.201	1.249	1.690	0.214	0.214	0.230	0.100	0.114	0.185	0.139	0.219	0.395	1.054	0.711	0.511	0.063	0.047	0.036	0.042	0.204	0.154	0.060	0.215	0.015	0.422
1033	chr10	13796759	13820593	+	0	NA	intron (NM_018027, intron 6 of 24)	intron (NM_018027, intron 6 of 24)	-59109	NM_001318338	55691	Hs.330463	NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding	nan	0.668	0.716	0.144	0.219	0.121	0.145	0.989	0.337	0.079	0.069	0.125	0.205	0.041	0.085	0.556	0.662	2.254	6.398	0.297	0.341	0.655	0.265	0.190	0.176	0.444	0.762	0.339	0.440	0.172	0.099	0.193	0.285	0.057	0.110	0.212	0.450	0.363	0.367	0.021	0.049	0.032	0.050	0.145	0.125	0.073	0.013	0.092	0.094
4059	chr19	39985047	39998849	+	0	NA	intron (NM_016941, intron 3 of 7)	intron (NM_016941, intron 3 of 7)	2391	NM_016941	10683	Hs.127792	NM_016941	ENSG00000090932	DLL3	SCDO1	delta like canonical Notch ligand 3	protein-coding	1.552	1.299	4.563	3.336	2.602	1.332	1.339	0.065	0.139	0.899	0.577	2.720	3.844	0.488	0.100	2.016	2.283	0.338	0.489	5.671	5.138	4.708	1.446	2.078	2.086	0.599	1.134	5.014	5.222	nan	3.288	1.315	2.194	1.489	1.075	1.852	3.400	2.602	1.508	2.216	2.998	0.172	0.617	1.339	2.720	0.365	2.558	0.892	1.377
2736	chr14	91707379	91725128	+	0	NA	intron (NM_003485, intron 1 of 1)	intron (NM_003485, intron 1 of 1)	3971	NM_003485	8111	Hs.8882	NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding	3.613	1.311	nan	0.552	0.634	0.334	0.874	0.155	0.191	0.299	0.324	1.016	1.275	0.275	0.152	0.615	0.962	0.491	0.746	2.690	2.291	2.109	0.830	1.533	1.466	1.784	2.277	2.900	2.296	3.149	3.357	0.452	0.781	1.264	0.664	0.374	1.284	nan	1.366	8.951	0.406	0.259	0.143	0.874	1.016	0.510	0.550	0.157	0.162
1539	chr11	77953339	77958347	+	0	NA	intron (NM_012296, intron 3 of 9)	L1M2a|LINE|L1	55985	NM_020798	57558	Hs.531249	NM_020798	ENSG00000118369	USP35	-	ubiquitin specific peptidase 35	protein-coding	nan	0.873	0.530	0.157	0.421	0.096	0.128	2.142	0.839	0.243	0.192	0.150	0.381	0.152	0.111	8.638	5.869	10.133	4.528	0.573	0.700	0.983	0.389	0.921	1.172	0.806	1.258	0.328	0.355	0.186	0.143	4.825	7.072	0.191	0.170	0.223	0.524	0.546	0.421	0.089	0.123		0.115	0.128	0.150	0.059	0.089	11.376	0.097
6702	chr6	31164171	31173910	+	0	NA	intron (NR_026791, intron 1 of 1)	MLT1G1|LTR|ERVL-MaLR	3503	NR_026791	253018	Hs.659818	NR_026791	ENSG00000206344	HCG27	bCX101P6.9|bPG299F13.9|bQB115I13.2	HLA complex group 27 (non-protein coding)	ncRNA	nan	4.272	nan	5.048	7.276	4.086	1.849	1.612	0.595	2.118	0.692	5.200	3.935	2.040	0.166	2.560	2.921	4.897	nan	nan	2.304	9.148	6.316	3.632	3.873	0.585	0.780	8.226	11.495	0.398	0.259	1.322	2.077	3.610	4.437	0.175	0.457	2.714	1.710	1.768	3.763	0.732	0.309	1.849	5.200	0.372	1.413	1.627	0.157
6054	chr4	155283527	155290147	+	0	NA	intron (NM_017639, intron 5 of 24)	AluSg7|SINE|Alu	25612	NM_017639	54798	Hs.655664	NM_017639	ENSG00000197410	DCHS2	CDH27|CDHJ|CDHR7|PCDH23|PCDHJ	dachsous cadherin-related 2	protein-coding	nan	0.587	0.434	0.052	0.260	0.049	0.116	0.045	0.024	0.096	0.149	0.018	0.157		0.043	0.899	0.800	7.410	0.937	0.143	0.141	0.041	0.017	0.353	0.276	0.142	0.174	0.202	0.193	0.256	0.067	3.350	5.793	0.025	0.054	0.094	0.174	0.168	0.209	0.009	0.068		0.179	0.116	0.018	0.014	0.015	3.412	0.113
366	chr1	71871474	71884253	+	0	NA	intron (NM_173808, intron 6 of 6)	L2c|LINE|L2	330856	NR_046217	100852410	Hs.535534	NR_046217	ENSG00000229956	ZRANB2-AS2	-	ZRANB2 antisense RNA 2 (head to head)	ncRNA	nan	0.776	0.873	0.411	0.469	0.188	0.118	0.113	0.176	0.294	0.193	0.299	0.344	0.060	0.110	0.523	0.321	0.226	0.206	0.551	nan	6.277	2.509	1.122	1.105	0.618	nan	0.993	0.927	0.422	0.155	0.186	0.263	0.184	0.214	0.350	0.623	0.679	0.452	0.088	0.105	0.052	0.006	0.118	0.299		0.016	0.031	0.058
8102	chr9	31535920	31545269	+	0	NA	Intergenic	Intergenic	-159106	NR_135134	101929620	Hs.547175	NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA	0.887	2.326	0.924	0.291	0.478	0.299	0.217	0.064	0.068	0.901	0.559	0.128	0.911	0.011	0.093	0.183	0.171	0.230	0.406	0.474	0.474	13.483	9.775	0.159	0.162	1.007	1.202	0.440	0.546	0.433	0.167	0.124	0.134	3.193	1.665	0.357	0.778	0.939	0.789	0.012	0.057	0.326	0.110	0.217	0.128		0.163	0.073	0.137
5621	chr3	156874370	156884837	+	0	NA	Intergenic	AluSx|SINE|Alu	-1054	NM_020307	57018	Hs.4859	NM_020307	ENSG00000163660	CCNL1	ANIA6A|BM-001|PRO1073|ania-6a	cyclin L1	protein-coding	nan	3.806	2.521	4.526	4.287	2.462	2.869	5.219	0.267	2.655	1.118	2.738	4.424	2.138	0.127	2.671	2.795	3.974	6.611	5.888	4.937	7.775	5.944	8.705	8.751	3.197	nan	4.729	6.934	6.373	6.607	1.485	3.508	2.377	2.319	4.549	4.809	2.371	1.394	2.472	3.173	0.365	2.594	2.869	2.738	0.786	1.196	1.055	2.120
5358	chr3	40291530	40297920	+	0	NA	intron (NM_001284426, intron 14 of 14)	intron (NM_001284426, intron 14 of 14)	-56448	NM_005875	10289	Hs.315230	NM_005875	ENSG00000114784	EIF1B	GC20	eukaryotic translation initiation factor 1B	protein-coding	0.547	nan	nan	0.081	0.138	0.175	0.060	0.081		0.048	0.118	0.075	0.197	0.071	0.100	0.440	0.521	4.203	1.524	0.283	0.306	0.173	0.048	0.160	0.191	0.181	0.239	0.196	0.190	0.373	0.132	7.327	10.096	0.027	0.048	0.038	0.280	0.361	0.418	0.017	0.111	0.015	0.025	0.060	0.075		0.016	8.877	0.039
3727	chr18	31895233	31905416	+	0	NA	Intergenic	MIRb|SINE|MIR	-96809	NM_001198546	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding	nan	0.920	0.802	0.530	0.321	0.219	0.828	0.081	0.032	0.549	0.259	0.429	0.662	0.042	0.100	0.474	0.501	0.443	0.509	0.831	1.164	1.906	0.735	0.171	0.112	0.430	0.637	nan	0.778	0.418	0.188	0.236	0.265	2.150	1.874	0.176	0.412	6.109	3.125	0.072	0.210	0.287	0.218	0.828	0.429	0.151	0.160	0.029	0.111
6196	chr5	16879157	16904999	+	0	NA	intron (NM_012334, intron 1 of 40)	intron (NM_012334, intron 1 of 40)	44307	NM_012334	4651	Hs.481720	NM_012334	ENSG00000145555	MYO10	-	myosin X	protein-coding	nan	nan	nan	0.578	0.139	0.082	0.307	3.052	0.684	0.262	0.195	0.300	nan	0.042	0.083	0.734	0.371	1.943	2.520	0.592	0.525	2.304	0.556	0.179	0.136	nan	2.226	2.195	1.805	0.682	0.388	2.096	3.461	0.155	0.188	0.693	nan	0.515	0.613	0.256	0.203	0.011	0.317	0.307	0.300	0.094	0.138	2.580	0.366
3527	chr17	71173764	71204284	+	0	NA	promoter-TSS (NM_018714)	promoter-TSS (NM_018714)	-149	NM_018714	9382	Hs.103555	NM_018714	ENSG00000166685	COG1	CDG2G|LDLB	component of oligomeric golgi complex 1	protein-coding	1.666	1.475	2.318	1.921	1.685	0.866	0.956	0.534	0.217	0.828	0.453	1.231	2.615	0.540	0.118	1.882	1.990	1.191	1.582	1.696	1.741	2.013	0.690	1.394	1.396	nan	1.775	2.712	3.260	3.225	3.234	0.732	1.320	1.399	1.608	1.423	2.849	nan	0.884	0.506	1.261	0.480	1.250	0.956	1.231	0.484	1.233	0.399	0.835
6821	chr6	56228183	56252086	+	0	NA	intron (NM_001318752, intron 1 of 28)	LTR33|LTR|ERVL	18792	NM_001318752	81578	Hs.47629	NM_030820	ENSG00000124749	COL21A1	COLA1L|FP633	collagen type XXI alpha 1 chain	protein-coding	1.096	1.207	nan	0.215	0.633	0.358	0.705	0.891	0.136	0.164	0.154	0.219	0.561	0.091	0.133	0.583	0.434	2.501	4.326	1.516	1.384	1.542	0.755	0.270	0.309	0.498	0.735	1.890	1.729	0.463	0.181	0.299	0.293	0.325	0.330	0.308	0.638	0.858	0.564	0.364	0.250	0.047	0.150	0.705	0.219	0.033	0.912	0.037	0.140
2343	chr13	73628505	73642315	+	0	NA	intron (NM_001730, intron 1 of 3)	intron (NM_001730, intron 1 of 3)	2480	NM_001730	688	Hs.508234	NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	Kruppel like factor 5	protein-coding	nan	6.228	1.559	1.506	1.704	0.977	2.998	1.020	0.046	0.148	0.109	2.142	14.378	3.628	0.098	0.560	0.712	2.277	5.377	1.616	1.459	nan	1.581	0.663	0.713	0.216	0.284	2.361	3.455	nan	0.597	1.761	3.960	1.086	1.086	0.508	nan	0.400	0.235	1.159	5.109	0.138	3.475	2.998	2.142	0.055	0.383	1.533	0.126
6440	chr5	124646969	124689401	+	0	NA	intron (NR_109882, intron 5 of 5)	intron (NR_109882, intron 5 of 5)	-160769	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA	nan	0.973	0.788	0.120	0.643	0.375	0.314	0.270	0.072	0.188	0.171	0.201	0.454	3.620	0.191	0.313	0.233	0.423	nan	0.342	0.399	0.560	0.246	0.244	0.243	1.702	2.004	0.424	0.415	0.953	0.633	0.082	0.148	1.648	2.436	0.503	1.303	0.399	0.258	0.060	0.134	0.515	0.116	0.314	0.201	0.116	0.166	0.030	0.234
7052	chr6	153444110	153476482	+	0	NA	Intergenic	L2a|LINE|L2	-7907	NM_012419	26575	Hs.166313	NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G-protein signaling 17	protein-coding	nan	2.680	1.495	2.073	0.833	0.392	0.521	0.152	0.055	0.537	0.424	1.631	2.469	0.114	0.094	0.415	0.391	0.301	0.460	1.848	nan	7.840	2.324	0.162	0.145	0.176	0.285	3.424	3.185	1.158	1.022	0.093	0.174	1.089	1.200	0.418	nan	1.705	1.003	1.300	0.458	0.100	0.020	0.521	1.631	0.114	1.318	0.034	0.233
6754	chr6	38474670	38479540	+	0	NA	intron (NM_001172418, intron 5 of 10)	intron (NM_001172418, intron 5 of 10)	27733	NR_144472	101929425	Hs.665280	NR_144472		BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA	nan	1.409	nan	0.271	1.038	0.329	1.073	0.370	0.098	0.160	0.101	0.462	0.789	0.066	0.114	2.911	3.877	9.297	12.070	nan	0.796	1.093	0.335	0.908	0.753	0.823	1.125	1.748	1.750	0.743	0.462	2.406	3.578	0.192	0.216	0.331	1.079	0.901	0.863	0.188	0.507	0.038	0.235	1.073	0.462	0.220	0.145	5.953	0.357
3771	chr18	42987827	43005384	+	0	NA	intron (NM_001242692, intron 1 of 20)	intron (NM_001242692, intron 1 of 20)	90396	NR_110899	101927980	Hs.591058	NR_110899		SLC14A2-AS1	-	SLC14A2 antisense RNA 1	ncRNA	nan	2.025	0.720	0.565	0.506	0.319	3.750	0.073	0.073	0.508	0.368	0.375	1.763	0.025	0.063	0.408	0.232	0.167	0.319	2.269	1.909	0.989	0.576	0.079	0.088	0.226	0.437	0.409	0.779	0.424	0.306	0.082	0.136	0.923	2.055	0.106	nan	3.990	2.315	1.301	1.041	0.269	0.032	3.750	0.375	0.128	0.947	0.017	0.070
1011	chr10	10353673	10360585	+	0	NA	Intergenic	Intergenic	147183	NR_120637	101928322	Hs.576789	NR_120637	ENSG00000270111	LOC101928322	-	uncharacterized LOC101928322	ncRNA	nan	0.600	0.879	0.088	0.202	0.069	0.074	0.466	0.093	0.138	0.083	0.035	0.245	0.015	0.084	0.981	0.745	9.843	5.790	0.166	0.192	0.347	0.165	0.270	0.216	0.405	0.549	0.121	0.188	0.144	0.063	0.299	0.462	0.031	0.036	0.253	0.331	0.084	0.160	0.008	0.026	0.040	0.127	0.074	0.035	0.014	0.015	0.142	0.044
6770	chr6	42846361	42849189	+	0	NA	intron (NR_134563, intron 1 of 5)	intron (NR_134563, intron 1 of 5)	421	NR_134562	285855	Hs.520133	NM_198486	ENSG00000146223	RPL7L1	dJ475N16.4	ribosomal protein L7 like 1	protein-coding	8.512	3.494	6.133	8.483	6.703	3.260	8.708	4.786	0.695	2.510	1.623	11.093	9.229	6.408	0.257	10.482	8.650	10.413	14.534	12.955	12.191	18.618	10.994	20.021	21.183	6.819	8.826	16.254	24.216	15.226	15.252	7.392	8.990	9.159	10.375	11.234	12.670	7.475	3.680	3.413	3.268	0.829	2.567	8.708	11.093	1.573	3.595	1.725	4.229
4515	chr2	138643540	138653834	+	0	NA	intron (NR_120402, intron 2 of 2)	HERV16-int|LTR|ERVL	36815	NR_120402	101928273	Hs.560928	NR_120402		LOC101928273	-	uncharacterized LOC101928273	ncRNA	nan	0.579	nan	0.416	0.315	0.136	0.276	0.094	0.063	0.169	0.183	0.703	0.499		0.059	0.350	0.247	0.213	0.309	0.696	0.539	8.460	4.405	0.136	0.118	0.911	1.370	0.665	nan	0.687	0.692	0.202	0.245	0.447	0.444	0.382	1.173	0.630	0.468	0.213	0.077	0.222	0.192	0.276	0.703	0.169	0.019	0.049	0.281
1754	chr12	248113	263055	+	0	NA	intron (NR_033859, intron 1 of 9)	AluJo|SINE|Alu	2748	NR_033859	574538	Hs.589138	NR_033859	ENSG00000249695	LOC574538	-	uncharacterized LOC574538	ncRNA	0.963	nan	nan	0.519	1.070	0.613	0.736	0.135	0.140	0.404	0.138	0.432	0.494	0.088	0.089	0.250	0.278	0.190	0.286	nan	1.345	3.587	1.142	0.348	0.306	0.387	0.716	1.235	1.737	0.479	0.298	0.925	0.987	0.193	0.168	0.223	nan	0.422	0.372	0.326	3.213	0.032	0.105	0.736	0.432	0.373	0.115	0.929	0.091
6563	chr5	175609460	175622957	+	0	NA	intron (NR_036494, intron 1 of 25)	intron (NR_036494, intron 1 of 25)	10090	NR_036494	643201	Hs.390285	NR_036494	ENSG00000248596	LOC643201	-	centrosomal protein 192kDa pseudogene	pseudo	1.688	2.621	1.228	0.158	0.669	0.306	0.525	0.078	0.095	0.201	0.245	1.498	1.200	0.032	0.083	0.331	0.872	0.418	nan	0.804	0.601	1.501	0.395	0.380	0.413	0.972	nan	1.625	1.674	0.488	0.470	2.360	3.491	3.944	5.902	0.137	0.246	0.898	0.539	1.212	2.547	0.587	0.054	0.525	1.498	0.414	1.232	4.369	0.082
2093	chr12	97603879	97624391	+	0	NA	Intergenic	AluSz|SINE|Alu	-244664	NR_024037	196475	Hs.652568	NR_024037	ENSG00000255794	RMST	LINC00054|NCRMS|NCRNA00054	rhabdomyosarcoma 2 associated transcript (non-protein coding)	ncRNA	0.748	0.751	0.558	0.994	2.286	1.268	0.356	0.160	0.174	0.916	0.610	2.293	nan	0.042	0.129	0.307	0.238	1.717	0.534	1.885	2.287	2.970	1.046	0.269	0.283	0.876	nan	2.921	nan	0.325	0.170	0.113	0.162	0.560	0.508	0.195	0.370	2.568	1.190	1.654	1.066	0.135	0.046	0.356	2.293	0.149	0.277	0.029	0.092
6160	chr5	7518651	7542861	+	0	NA	intron (NM_020546, intron 3 of 24)	L2b|LINE|L2	134413	NM_020546	108	Hs.481545	NM_020546	ENSG00000078295	ADCY2	AC2|HBAC2	adenylate cyclase 2	protein-coding	0.708	0.888	1.799	2.476	0.614	0.225	0.102	0.130	0.193	0.272	0.277	0.856	1.614	0.040	0.106	0.388	0.368	0.140	nan	2.295	2.380	0.127	0.087	0.004	0.004	0.272	0.390	nan	4.160	nan	0.616	0.137	0.219	0.081	0.096	0.169	0.289	2.416	nan	0.163	0.121	0.024	0.048	0.102	0.856	0.080	0.193	0.082	0.168
1927	chr12	47470634	47485768	+	0	NA	intron (NM_138371, intron 1 of 3)	L1MB7|LINE|L1	-4467	NM_001143668	347902	Hs.121520	NM_181847	ENSG00000139211	AMIGO2	ALI1|AMIGO-2|DEGA	adhesion molecule with Ig like domain 2	protein-coding	1.058	nan	0.948	4.638	4.654	2.326	0.163	3.268	0.244	0.280	0.190	3.331	5.228	0.615	0.101	0.354	0.340	0.572	1.545	0.316	0.324	2.637	0.966	0.910	0.899	0.119	0.170	6.281	6.025	0.681	0.677	0.289	0.382	1.793	2.603	0.192	0.340	0.880	0.634	0.110	0.206	0.389	0.136	0.163	3.331	0.026	5.510	0.154	0.107
4779	chr2	238382834	238399038	+	0	NA	Intergenic	L2b|LINE|L2	-4117	NM_001281474	79083	Hs.102406	NM_024101	ENSG00000115648	MLPH	SLAC2-A	melanophilin	protein-coding	1.015	nan	1.639	1.922	1.583	0.933	0.897	0.543	0.140	0.372	0.172	0.869	3.103	0.355	0.148	0.506	0.519	0.788	1.581	1.326	1.287	5.168	1.850	0.502	0.582	0.371	0.587	3.459	nan	0.929	0.921	0.426	0.543	1.847	1.769	0.414	0.471	1.298	0.804	0.290	0.657	0.343	0.235	0.897	0.869	0.161	2.360	0.116	0.143
5457	chr3	111392251	111397974	+	0	NA	TTS (NR_046733)	TTS (NR_046733)	1168	NR_046733	100874115	Hs.626740	NR_046733		PLCXD2-AS1	-	PLCXD2 antisense RNA 1	ncRNA	2.125	2.942	1.641	0.950	5.989	2.811	1.454	0.525	0.085	1.540	0.920	2.726	4.331	0.060	0.067	1.885	2.579	2.632	6.012	4.690	nan	13.281	2.488	1.196	1.635	nan	0.729	0.959	1.159	5.176	5.386	0.468	1.085	1.723	2.134	2.706	3.443	2.515	1.368	0.435	0.635	0.317	0.705	1.454	2.726	0.393	0.481	0.380	1.538
1442	chr11	61558464	61563764	+	0	NA	intron (NM_004111, intron 1 of 1)	(TTAA)n|Simple_repeat|Simple_repeat	1005	NM_004111	2237	Hs.409065	NM_004111	ENSG00000168496	FEN1	FEN-1|MF1|RAD2	flap structure-specific endonuclease 1	protein-coding	nan	5.377	3.535	8.158	6.720	3.968	5.699	3.129	0.334	2.913	1.582	5.918	12.828	4.374	0.169	13.234	9.110	10.675	14.745	17.051	17.370	10.845	8.519	17.507	19.792	8.650	10.137	10.069	16.054	10.204	10.040	9.321	13.059	8.780	13.955	8.010	7.198	4.110	2.134	5.663	4.098	2.301	2.053	5.699	5.918	1.839	3.050	2.523	2.052
1614	chr11	107049886	107057923	+	0	NA	Intergenic	Intergenic	-164733	NM_001256424	2977	Hs.24321	NM_000855	ENSG00000152402	GUCY1A2	GC-SA2|GUC1A2	guanylate cyclase 1 soluble subunit alpha 2	protein-coding	0.583	0.694	0.621	0.097	0.211	0.063	0.048	0.044		0.097	0.130	0.030	0.251	0.094	0.105	9.188	5.129	2.495	0.969	0.233	0.272	0.089	0.083	1.456	1.512	0.198	0.399	0.181	0.254	0.418	0.163	1.836	2.723	0.089	0.112	0.180	0.347	0.261	0.211	0.021	0.088	0.012	0.059	0.048	0.030		0.013	1.682	0.077
2218	chr12	133169347	133188367	+	0	NA	TTS (NM_001195520)	TTS (NM_001195520)	8180	NM_001195520	100507055	Hs.282811	NM_001195520	ENSG00000204583	LRCOL1	-	leucine rich colipase like 1	protein-coding	0.913	0.879	0.627	0.588	0.526	0.220	0.303	0.076	0.042	0.510	0.398	0.290	1.427	0.525	0.131	0.407	0.480	0.365	0.489	5.112	4.082	3.301	0.575	0.556	0.638	0.310	0.541	nan	2.262	0.495	0.311	1.319	1.944	0.335	0.475	0.238	0.482	1.367	0.963	2.018	0.889	0.080	0.405	0.303	0.290	0.376	0.920	1.208	0.046
2316	chr13	53347920	53363727	+	0	NA	Intergenic	Intergenic	-28362	NR_031582	100313778		NR_031582	ENSG00000211579	MIR759	hsa-mir-759	microRNA 759	ncRNA	0.773	nan	nan	0.081	0.265	0.112	0.847	0.086	0.092	0.159	0.113	0.374	0.653	0.041	0.094	0.736	0.748	0.557	1.016	0.650	0.713	nan	1.499	0.062	0.078	0.186	0.443	0.854	0.774	0.369	0.249	0.462	0.659	0.859	0.974	0.605	nan	0.609	0.324	2.522	0.743	0.175	0.128	0.847	0.374	0.074	0.122	0.124	0.310
7422	chr7	105681053	105719089	+	0	NA	Intergenic	L1M5|LINE|L1	52720	NM_182715	6856	Hs.80919	NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding	nan	1.081	1.633	0.159	0.670	0.299	0.454	0.636	0.160	0.292	0.226	0.438	2.500	0.117	0.170	0.376	0.422	0.509	0.734	0.660	0.769	1.643	0.451	0.218	0.209	2.990	3.572	0.493	0.671	1.459	1.830	0.397	0.704	3.462	2.950	0.507	nan	1.076	0.886	1.506	0.685	0.854	0.227	0.454	0.438	0.703	0.080	0.228	0.135
4949	chr20	36878882	36916000	+	0	NA	intron (NR_104170, intron 1 of 1)	AluSq2|SINE|Alu	-8267	NM_001029864	85449	Hs.472690	NM_001029864	ENSG00000149633	KIAA1755	-	KIAA1755	protein-coding	1.870	1.056	0.724	0.213	0.259	0.117	0.344	0.466	0.170	0.075	0.074	0.115	0.344	0.058	0.129	0.821	0.923	0.201	0.184	0.309	nan	1.587	0.433	0.321	0.365	0.176	0.320	0.315	0.348	5.613	5.440	0.237	0.346	0.097	0.082	1.832	nan	0.264	0.264	0.028	0.084	0.023	0.062	0.344	0.115	0.134	0.046	0.067	2.535
1743	chr11	132270939	132302823	+	0	NA	3' UTR (NM_001319103, exon 8 of 8)	3' UTR (NM_001319103, exon 8 of 8)	132685	NR_046820	100874281		NR_046820		NTM-IT	NTM-IT3	NTM intronic transcript	ncRNA	0.598	nan	0.566	0.575	2.202	1.182	0.340	0.017	0.028	0.505	0.265	1.411	nan	0.041	0.065	0.510	0.563	0.149	0.254	0.877	0.968	2.023	1.356	0.481	0.534	0.169	0.242	4.986	7.687	0.319	0.203	0.232	0.281	0.198	0.278	0.142	0.238	1.239	0.778	1.904	0.364	0.042	0.045	0.340	1.411	0.009	0.041	0.059	0.135
6832	chr6	61910543	61914861	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-371306	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding	nan	13.230	11.276	1.654	2.578	1.082	1.804	1.593	8.313	1.190	3.224	1.318	2.858	1.090	3.196	7.787	4.576	6.944	9.124	7.067	8.667	3.360	2.656	6.573	6.436	4.646	5.795	5.466	4.907	9.840	3.847	4.137	6.354	1.848	3.035	3.796	4.935	3.281	4.865	0.233	0.823	0.176	0.657	1.804	1.318	0.230	0.590	0.763	0.428
4770	chr2	237476209	237492004	+	0	NA	intron (NM_020311, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	5726	NM_020311	57007	Hs.471751	NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding	1.121	nan	4.040	2.010	0.444	0.233	0.460	0.057	0.030	0.049	0.063	0.682	0.980	0.076	0.115	8.511	13.063	0.303	0.425	1.854	2.096	0.105	0.061	1.855	1.882	1.432	1.700	2.458	nan	1.338	0.843	2.088	3.028	0.040	0.081	0.177	0.173	0.147	0.201	2.368	0.784	0.030	0.216	0.460	0.682	0.116	0.750	2.035	0.040
6555	chr5	173906467	173951273	+	0	NA	intron (NR_125806, intron 2 of 5)	intron (NR_125806, intron 2 of 5)	165513	NR_125806	101928176	Hs.436014	NR_125806	ENSG00000249306	LINC01411	-	long intergenic non-protein coding RNA 1411	ncRNA	0.568	0.573	0.578	0.064	0.822	0.476	1.407	0.093	0.057	0.042	0.089	0.102	1.374	0.038	0.103	0.243	0.143	5.491	nan	0.313	0.362	0.075	0.041	0.051	0.062	0.472	nan	0.414	0.423	0.177	0.074	0.222	0.304	2.034	2.349	0.088	0.215	0.180	0.185	0.034	0.138	0.677	0.016	1.407	0.102	0.015	0.059	0.088	0.039
5898	chr4	53813933	53826661	+	0	NA	intron (NM_152540, intron 5 of 8)	intron (NM_152540, intron 5 of 8)	91802	NM_023940	65997	Hs.8035	NM_023940	ENSG00000128045	RASL11B	-	RAS like family 11 member B	protein-coding	nan	0.617	1.594	0.939	0.405	0.163	1.443	0.198	0.089	0.492	0.307	0.367	0.505	0.026	0.066	0.436	0.629	0.334	0.503	1.430	1.161	7.500	2.196	0.480	0.352	1.093	1.475	2.002	1.757	0.590	0.706	0.230	0.425	2.122	2.817	0.458	0.661	3.216	1.793	0.853	0.422	0.966	0.714	1.443	0.367	0.144	0.312	0.140	0.196
4109	chr19	47352582	47371001	+	0	NA	Intergenic	AluSz|SINE|Alu	-7539	NM_004069	1175	Hs.119591	NM_004069	ENSG00000042753	AP2S1	AP17|CLAPS2|FBH3|FBHOk|HHC3	adaptor related protein complex 2 sigma 1 subunit	protein-coding	3.077	2.125	2.887	2.400	2.307	1.251	1.524	1.859	0.220	1.008	0.567	2.117	3.791	2.063	0.119	1.965	1.961	2.016	3.315	3.696	3.445	3.896	1.749	4.561	4.817	2.448	3.234	4.275	5.706	2.952	3.028	1.380	2.506	1.857	2.371	3.011	4.380	2.537	1.150	1.868	4.261	0.569	0.830	1.524	2.117	0.911	1.524	0.699	1.211
4401	chr2	70519545	70533237	+	0	NA	intron (NM_001329758, intron 3 of 3)	intron (NM_001329758, intron 3 of 3)	2786	NM_001329752	84908	Hs.516077	NM_032822	ENSG00000035141	FAM136A	-	family with sequence similarity 136 member A	protein-coding	nan	nan	3.333	2.142	2.426	1.169	1.990	0.987	0.280	0.732	0.517	1.826	6.010	2.287	0.175	2.594	2.437	3.644	5.074	4.296	3.691	4.523	2.426	6.803	7.145	2.771	3.594	4.046	6.166	3.753	3.581	1.891	2.755	1.496	1.757	3.754	3.525	nan	0.887	1.489	2.200	0.180	0.760	1.990	1.826	0.724	1.538	0.657	0.887
3205	chr16	85448847	85526647	+	0	NA	Intergenic	Intergenic	-147816	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA	nan	1.882	5.076	4.033	4.631	2.309	3.118	0.142	0.056	1.175	0.707	6.317	7.048	0.078	0.066	1.353	2.116	0.192	0.459	6.122	5.682	2.228	0.680	1.002	1.111	1.412	2.023	4.636	4.595	3.793	4.259	0.687	1.012	1.490	1.272	1.954	4.590	2.132	1.035	3.358	2.607	0.675	2.024	3.118	6.317	1.431	2.577	0.787	1.823
4995	chr20	49545785	49549011	+	0	NA	promoter-TSS (NR_110009)	promoter-TSS (NR_110009)	-123	NR_110009	101927631	Hs.301898	NR_110007	ENSG00000259456	ADNP-AS1	-	ADNP antisense RNA 1	ncRNA	10.624	8.581	9.982	7.104	9.969	5.262	8.308	3.521	0.598	4.905	1.942	9.916	15.768	8.256	0.144	15.862	15.481	12.280	13.602	14.029	12.465	14.677	10.138	21.032	20.573	8.184	9.514	11.193	19.014	13.759	14.219	9.726	15.729	5.055	3.688	14.543	11.645	5.568	3.836	4.300	6.517	1.203	5.211	8.308	9.916	2.228	4.906	4.071	4.150
1383	chr11	34804940	34820665	+	0	NA	Intergenic	L2a|LINE|L2	-124875	NM_001135024	8050	Hs.502315	NM_003477	ENSG00000110435	PDHX	DLDBP|E3BP|OPDX|PDX1|proX	pyruvate dehydrogenase complex component X	protein-coding	0.595	2.283	nan	0.201	1.223	0.592	0.162	0.143	0.130	0.776	0.342	2.267	1.059	0.014	0.122	0.560	0.525	0.837	0.812	0.598	0.640	6.722	2.587	0.582	0.542	0.202	0.429	0.607	0.527	0.299	0.128	0.207	0.455	1.645	2.329	0.084	nan	1.373	0.867	0.106	0.120	0.658	0.560	0.162	2.267	0.043	0.032	0.075	0.087
137	chr1	23666150	23672421	+	0	NA	intron (NM_005826, intron 1 of 10)	intron (NM_005826, intron 1 of 10)	1572	NM_001102398	10236	Hs.373763	NM_005826	ENSG00000125944	HNRNPR	HNRPR|hnRNP-R	heterogeneous nuclear ribonucleoprotein R	protein-coding	7.113	3.796	nan	8.580	5.857	2.989	5.055	2.402	0.205	3.422	1.480	2.790	10.001	5.280	0.190	6.497	5.691	6.248	8.253	13.423	12.937	4.661	2.936	14.823	14.902	8.862	10.238	8.301	13.661	8.706	9.475	5.746	9.253	3.945	4.430	11.165	8.850	3.463	1.874	6.524	4.134	0.956	3.711	5.055	2.790	1.629	1.892	2.490	3.213
1414	chr11	47535256	47548220	+	0	NA	intron (NM_001330272, intron 1 of 15)	intron (NM_001330272, intron 1 of 15)	3802	NM_001172639	10658	Hs.595333	NM_006560	ENSG00000149187	CELF1	BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50	CUGBP, Elav-like family member 1	protein-coding	nan	1.673	1.013	0.326	0.709	0.298	0.585	0.707	0.180	0.511	0.334	0.338	0.669	0.266	0.116	0.672	1.079	0.405	0.707	1.147	1.365	0.939	0.343	0.930	1.026	4.520	5.482	0.340	0.751	1.904	1.599	0.443	0.738	0.922	1.454	0.643	nan	0.980	0.673	0.181	0.296	0.264	0.141	0.585	0.338	0.606	0.094	0.183	0.229
4504	chr2	134898377	134919347	+	0	NA	Intergenic	Intergenic	24166	NR_037450	100500878		NR_037450	ENSG00000263813	MIR3679	mir-3679	microRNA 3679	ncRNA	nan	0.648	nan	0.185	0.309	0.103	0.287	0.204	0.038	0.067	0.107	0.212	0.420	0.042	0.065	1.749	1.700	0.877	0.719	0.259	0.272	0.634	0.236	0.406	0.330	0.792	1.081	0.464	nan	1.390	1.319	0.566	0.678	0.132	0.156	1.650	4.706	0.339	0.338	0.067	0.064	0.018	0.171	0.287	0.212	0.403	0.048	0.188	1.763
8059	chr9	14073980	14113259	+	0	NA	intron (NM_001190738, intron 8 of 8)	intron (NM_001190738, intron 8 of 8)	87182	NM_001282787	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding	nan	nan	1.335	0.566	0.563	0.323	0.467	0.488	0.102	0.454	0.446	0.512	1.668	0.069	0.114	0.209	0.120	2.374	4.086	0.705	0.854	0.929	0.365	0.221	0.157	6.068	7.679	1.417	1.834	0.370	0.181	0.232	0.350	1.209	1.136	0.306	0.799	1.374	0.885	3.903	0.161	0.252	0.156	0.467	0.512	0.015	0.131	0.091	0.063
7443	chr7	114888611	114896374	+	0	NA	Intergenic	MER70C|LTR|ERVL	-21083	NR_126407	104355291		NR_126407	ENSG00000233607	LINC01392	-	long intergenic non-protein coding RNA 1392	ncRNA	nan	0.783	1.197	0.159	0.233	0.144	0.171	0.114	0.103	0.180	0.146	0.267	0.301	0.042	0.171	0.303	0.300	0.214	0.621	0.234	0.252	0.117	0.086	0.236	0.212	0.487	0.596	0.339	0.377	0.539	0.317	0.225	0.238	8.766	11.812	0.360	0.846	0.634	0.641	0.027	0.081	2.038	0.071	0.171	0.267	0.125	0.092	0.042	0.112
666	chr1	173833585	173838251	+	0	NA	promoter-TSS (NR_002750)	promoter-TSS (NR_002750)	-65	NR_003942	692196		NR_003942		SNORD76	U76	small nucleolar RNA, C/D box 76	snoRNA	4.485	nan	nan	3.428	3.935	1.763	2.509	3.108	0.552	2.607	1.386	3.687	7.873	6.243	0.230	5.164	5.413	8.101	12.252	nan	5.311	7.540	3.437	9.870	9.881	4.180	5.902	7.761	8.283	6.692	7.660	4.814	8.353	4.123	3.936	14.818	9.474	2.994	1.542	2.113	5.092	0.849	1.427	2.509	3.687	1.366	2.347	2.508	3.133
3794	chr18	47337144	47341535	+	0	NA	intron (NM_006111, intron 1 of 9)	intron (NM_006111, intron 1 of 9)	912	NM_006111	10449	Hs.200136	NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding	nan	4.916	4.168	6.518	5.326	2.592	9.360	1.578	0.109	1.895	0.636	6.040	18.205	3.763	0.147	5.978	7.651	5.649	9.148	13.266	11.803	14.459	4.744	4.241	4.549	3.803	4.389	5.437	8.596	5.869	6.868	3.435	6.776	8.577	7.871	4.218	nan	6.548	3.510	5.070	4.140	1.970	3.102	9.360	6.040	2.121	3.265	2.297	3.713
1074	chr10	25136631	25146830	+	0	NA	intron (NM_020200, intron 7 of 8)	intron (NM_020200, intron 7 of 8)	99843	NM_020200	56952	Hs.405619	NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding	0.619	1.930	2.914	0.365	1.390	0.807	0.565	0.653	0.222	0.583	0.499	0.985	2.361	0.044	0.086	0.551	0.330	0.929	1.825	0.465	0.464	7.051	2.914	0.059	0.086	0.557	0.757	0.736	0.862	0.222	0.087	0.060	0.122	1.056	2.154	0.297	0.484	1.318	0.796	0.119	0.270	0.177	1.145	0.565	0.985	0.029	0.758	0.020	0.205
3884	chr18	68219205	68224981	+	0	NA	Intergenic	Intergenic	96000	NM_001278515	220158	Hs.448217	NM_178506		GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1 (non-protein coding)	protein-coding	0.858	0.736	0.633	0.165	0.769	0.308	9.199	0.079	0.028	0.650	0.563	0.684	0.592	0.037	0.071	1.044	0.740	0.223	0.474	1.826	1.752	8.734	5.266	0.596	nan	0.157	nan	0.571	0.593	1.240	1.552	0.075	0.149	5.032	3.524	0.171	0.310	1.998	1.518	0.058	0.108	0.744	0.027	9.199	0.684	0.101	0.087	0.034	0.107
7546	chr7	152368311	152380706	+	0	NA	Intergenic	AluSx4|SINE|Alu	-1258	NM_005431	7516	Hs.647093	NM_005431	ENSG00000196584	XRCC2	FANCU	X-ray repair cross complementing 2	protein-coding	2.281	1.065	nan	1.101	1.035	0.492	0.813	0.575	0.234	0.923	0.541	0.994	1.510	1.179	0.205	1.912	1.491	1.742	2.174	1.605	1.226	4.047	1.893	2.198	2.162	1.454	1.763	1.355	2.300	2.249	2.015	1.352	1.758	2.860	4.187	2.461	2.270	2.812	1.574	1.267	0.876	0.912	0.507	0.813	0.994	0.525	0.549	0.497	0.540
2576	chr14	46357472	46364879	+	0	NA	Intergenic	LTR18B|LTR|ERVL	-172187	NR_102701	100506412	Hs.207545	NR_102699	ENSG00000258700	LINC00871	-	long intergenic non-protein coding RNA 871	ncRNA	nan	2.477	nan	3.676	4.740	2.727	4.331	0.125	0.065	0.274	0.310	7.977	5.565	0.015	0.065	0.395	0.393	0.277	0.536	8.065	7.882	5.198	2.301	1.228	1.312	0.218	0.364	3.576	4.385	0.459	0.324	0.175	0.287	4.614	4.718	0.220	0.359	2.328	1.598	2.107	3.075	0.826	3.503	4.331	7.977	0.026	0.481	0.081	0.034
4938	chr20	35461603	35477377	+	0	NA	intron (NM_080627, intron 1 of 14)	AluSz|SINE|Alu	18786	NM_199181	140710	Hs.460807	NM_080627	ENSG00000149639	SOGA1	C20orf117|KIAA0889|SOGA	suppressor of glucose, autophagy associated 1	protein-coding	2.407	2.745	2.134	0.770	1.380	0.627	1.125	0.645	0.411	0.677	0.399	1.080	3.540	0.916	0.130	2.003	2.779	1.022	1.577	0.947	nan	6.492	2.134	1.111	0.930	1.471	2.003	1.273	1.557	1.631	1.709	0.471	0.840	2.321	3.502	1.952	nan	1.076	0.622	0.644	0.703	0.588	0.156	1.125	1.080	0.665	0.404	0.363	1.539
8347	chr9	140373005	140390392	+	0	NA	intron (NM_152286, intron 19 of 33)	intron (NM_152286, intron 19 of 33)	-27912	NM_001130969	26012	Hs.455336	NM_015537	ENSG00000165802	NSMF	HH9|NELF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.766	0.711	2.305	1.737	0.463	0.294	0.280	0.090	0.055	0.660	0.356	4.131	0.505	0.043	0.065	0.349	0.407	0.206	nan	4.211	nan	1.385	0.394	0.114	0.179	0.175	0.329	6.070	7.138	1.100	1.032	0.278	0.234	0.620	0.673	0.336	0.423	1.867	1.068	0.497	0.568	0.072	0.103	0.280	4.131	0.369	4.156	0.023	0.085
6125	chr5	1102578	1132993	+	0	NA	Intergenic	LTR8|LTR|ERV1	-5613	NM_006598	10723	Hs.172613	NM_006598	ENSG00000113504	SLC12A7	KCC4	solute carrier family 12 member 7	protein-coding	0.856	1.578	2.101	0.679	0.878	0.462	1.150	1.264	0.265	0.440	0.342	2.136	2.699	0.407	0.086	0.932	1.657	0.524	nan	2.588	2.182	1.362	0.378	0.449	0.455	0.218	0.425	nan	4.502	nan	0.723	0.827	1.168	0.295	0.409	0.085	0.103	1.870	nan	2.632	2.285	0.025	0.162	1.150	2.136	0.478	0.566	0.326	0.121
3287	chr17	15543954	15564403	+	0	NA	intron (NM_006470, intron 4 of 8)	(CAGAGA)n|Simple_repeat|Simple_repeat	-31160	NM_001282540	374286	Hs.548021	NM_006382	ENSG00000241322	CDRT1	C170RF1|C17ORF1|C17ORF1A|FBXW10B|FBXW10P1|HREP|SM25H2	CMT1A duplicated region transcript 1	protein-coding	1.413	1.183	0.991	0.583	0.398	0.258	0.542	0.796	0.157	0.100	0.125	0.269	0.729	0.102	0.064	0.448	0.628	1.750	nan	0.524	0.483	2.512	0.791	1.151	1.121	0.632	0.647	2.666	3.286	nan	0.335	0.240	0.224	0.476	0.974	0.549	1.348	0.994	0.576	0.157	0.123	0.065	0.097	0.542	0.269	0.343	4.270	0.048	0.357
1601	chr11	101607948	101620576	+	0	NA	Intergenic	Intergenic	-159603	NM_004621	7225	Hs.159003	NM_004621	ENSG00000137672	TRPC6	FSGS2|TRP6	transient receptor potential cation channel subfamily C member 6	protein-coding	0.693	0.692	0.817	0.091	0.235	0.051	0.171	0.106	0.025	0.086	0.133	0.048	0.235	0.050	0.127	0.269	0.187	0.935	0.884	0.245	0.336	0.144	0.057	0.556	0.518	5.416	5.613	0.172	0.168	0.294	0.058	0.222	0.346	0.066	0.074	0.093	0.150	0.224	0.322	0.022	0.063	0.038	0.106	0.171	0.048	0.061	0.032	0.040	0.049
323	chr1	59235215	59253207	+	0	NA	Intergenic	Intergenic	5574	NM_002228	3725	Hs.696684	NM_002228	ENSG00000177606	JUN	AP-1|AP1|c-Jun	Jun proto-oncogene, AP-1 transcription factor subunit	protein-coding	3.243	2.619	5.404	2.852	2.645	1.557	1.777	2.320	0.247	2.608	1.097	5.103	6.979	0.519	0.100	1.311	2.228	2.149	3.401	7.383	5.318	4.514	2.530	4.780	5.074	2.963	3.996	5.409	7.027	1.698	2.458	1.202	1.811	2.405	1.777	1.533	nan	2.771	1.510	1.446	1.369	0.595	2.246	1.777	5.103	0.833	1.564	0.276	0.550
6904	chr6	110939520	110955320	+	0	NA	intron (NM_015076, intron 8 of 12)	intron (NM_015076, intron 8 of 12)	-149576	NM_033125	85413	Hs.520319	NM_033125	ENSG00000004809	SLC22A16	CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 member 16	protein-coding	nan	0.846	nan	0.671	1.300	0.597	0.415	0.209	0.066	0.227	0.193	3.796	0.389	0.080	0.134	0.479	0.570	0.385	0.535	2.478	nan	nan	0.688	3.245	3.507	0.268	nan	0.436	0.372	0.983	0.713	0.205	0.486	0.412	0.681	0.309	nan	0.581	0.385	0.117	0.509	0.049	1.033	0.415	3.796	0.196	0.070	0.138	0.204
5292	chr22	44914577	44934731	+	0	NA	Intergenic	MIRb|SINE|MIR	-30649	NM_032287	84247	Hs.744991	NM_032287	ENSG00000188636	LDOC1L	Mar6|Mart6|dJ1033E15.2	leucine zipper down-regulated in cancer 1 like	protein-coding	0.686	nan	0.403	2.351	0.690	0.245	0.609	0.424	0.127	0.398	0.221	1.423	3.934	0.070	0.100	0.433	0.570	0.142	0.285	2.295	2.165	1.993	0.862	0.257	0.283	0.102	nan	2.346	3.301	nan	1.363	0.263	0.319	0.348	0.518	0.239	0.415	2.189	1.347	0.194	0.851	0.047	0.027	0.609	1.423	0.159	1.407	0.117	0.062
2467	chr13	114143504	114149124	+	0	NA	intron (NM_017905, intron 1 of 12)	intron (NM_017905, intron 1 of 12)	1006	NM_017905	55002	Hs.317593	NM_017905	ENSG00000150403	TMCO3	C13orf11	transmembrane and coiled-coil domains 3	protein-coding	3.590	4.243	2.864	5.391	3.685	1.910	6.050	1.858	0.318	1.395	0.731	4.151	7.703	1.942	0.089	6.187	7.036	4.695	7.638	5.751	5.351	9.764	3.135	2.113	2.323	0.798	1.356	3.158	6.009	3.261	3.688	2.932	6.622	6.314	12.493	3.306	4.058	0.856	0.355	2.783	4.124	1.765	2.656	6.050	4.151	0.846	2.933	2.564	0.901
5196	chr22	21607700	21617380	+	0	NA	Intergenic	Intergenic	-24174	NR_024583	29797	Hs.396963	NM_001029950		POM121L8P	DKFZp434K191	POM121 transmembrane nucleoporin like 8, pseudogene	pseudo	0.959	nan	0.986	0.361	0.638	0.215	2.323	0.226	0.134	0.178	0.137	0.185	3.527	0.068	0.185	0.504	0.416	0.360	0.442	1.132	0.956	3.342	0.446	0.922	1.025	0.415	0.771	0.549	0.989	1.616	2.428	0.312	0.369	0.368	0.794	0.262	0.399	2.432	2.007	0.383	0.221	0.079	0.164	2.323	0.185	4.647	0.293	0.094	0.111
187	chr1	32680546	32689134	+	0	NA	intron (NR_133634, intron 3 of 5)	intron (NR_133634, intron 3 of 5)	-2345	NM_003757	8668	Hs.530096	NM_003757	ENSG00000084623	EIF3I	EIF3S2|PRO2242|TRIP-1|TRIP1|eIF3-beta|eIF3-p36	eukaryotic translation initiation factor 3 subunit I	protein-coding	2.575	nan	1.797	5.531	2.198	1.293	1.271	0.874	0.205	2.372	0.918	5.114	4.071	1.439	0.132	1.479	1.695	2.031	2.831	3.798	3.907	nan	1.365	4.118	4.444	2.332	3.336	5.428	7.840	nan	1.329	1.111	1.619	0.910	1.210	1.746	2.402	1.957	nan	2.421	2.631	0.056	0.304	1.271	5.114	0.307	1.266	0.381	0.576
6408	chr5	112598613	112617857	+	0	NA	intron (NM_001085377, intron 3 of 18)	intron (NM_001085377, intron 3 of 18)	22377	NM_002387	4163	Hs.593171	NM_002387	ENSG00000171444	MCC	MCC1	mutated in colorectal cancers	protein-coding	1.683	0.976	1.057	0.064	0.160	0.093	0.668	0.145	0.109	0.148	0.111	0.019	0.191	0.034	0.109	0.208	0.137	0.945	3.656	0.147	0.176	0.189	0.091	0.119	0.127	0.819	nan	0.116	0.106	1.401	1.233	0.086	0.241	2.198	2.843	0.891	3.067	0.616	0.528	0.022	0.056	0.790	0.249	0.668	0.019	0.154	0.027	0.020	0.884
1283	chr11	2931205	2952572	+	0	NA	intron (NM_001315502, intron 6 of 8)	intron (NM_001315502, intron 6 of 8)	8762	NM_003311	7262	Hs.154036	NM_003311	ENSG00000181649	PHLDA2	BRW1C|BWR1C|HLDA2|IPL|TSSC3	pleckstrin homology like domain family A member 2	protein-coding	0.824	1.529	1.648	0.256	0.407	0.173	0.710	0.424	0.136	0.176	0.106	0.205	2.096	0.285	0.055	4.147	5.954	0.281	0.665	0.692	0.561	1.322	0.385	0.911	1.030	0.424	0.693	0.504	0.817	0.467	0.407	0.899	0.771	0.505	0.593	0.064	0.129	0.527	0.452	0.675	0.054	0.062	0.037	0.710	0.205	0.050	0.641	0.125	0.035
6909	chr6	112030492	112040273	+	0	NA	intron (NM_002037, intron 5 of 13)	intron (NM_002037, intron 5 of 13)	5883	NM_153047	2534	Hs.390567	NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding	nan	1.241	nan	1.398	1.451	0.760	1.458	0.513	0.152	0.260	0.218	0.658	4.454	0.067	0.106	0.623	0.739	0.894	0.896	2.648	nan	nan	0.275	0.521	0.547	1.854	nan	1.473	1.523	3.452	3.119	0.592	1.099	0.702	0.915	1.045	nan	1.149	0.518	0.327	1.528	0.166	0.982	1.458	0.658	1.364	0.313	0.725	0.763
212	chr1	37150578	37185712	+	0	NA	Intergenic	MIRb|SINE|MIR	-219230	NM_156039	1441	Hs.524517	NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding	1.345	nan	1.182	0.178	0.395	0.231	0.216	0.059	0.055	0.138	0.161	0.487	0.685	0.065	0.100	0.213	0.142	0.106	0.107	0.567	0.694	nan	0.235	0.131	0.132	3.997	4.555	13.431	13.130	nan	1.682	0.428	0.431	0.201	0.296	1.325	4.041	0.797	nan	0.136	0.145	0.038	0.076	0.216	0.487	0.407	0.087	0.065	1.486
3384	chr17	36979281	36983577	+	0	NA	promoter-TSS (NR_039880)	promoter-TSS (NR_039880)	174	NM_017748	54883	Hs.406223	NM_017748	ENSG00000273559	CWC25	CCDC49	CWC25 spliceosome associated protein homolog	protein-coding	nan	3.894	3.298	2.533	7.262	4.066	3.815	2.496	0.262	2.286	1.001	4.065	7.979	2.203	0.138	6.149	4.987	7.644	11.588	nan	5.157	8.451	7.435	23.600	26.457	3.890	4.337	9.056	13.767	nan	6.793	2.937	3.390	7.611	8.186	12.499	11.406	3.267	2.516	2.436	2.058	0.648	1.671	3.815	4.065	1.789	2.238	1.153	2.678
6934	chr6	122962389	122975662	+	0	NA	intron (NM_032471, intron 2 of 3)	ERVL-B4-int|LTR|ERVL	-4849	NM_001270395	5570	Hs.741340	NM_032471	ENSG00000135549	PKIB	PRKACN2	cAMP-dependent protein kinase inhibitor beta	protein-coding	1.299	0.897	0.860	0.179	0.342	0.242	0.144	0.085	0.122	0.447	0.218	0.162	0.301	0.049	0.092	0.378	0.158	0.222	0.466	0.295	0.457	6.175	1.613	0.186	0.178	0.214	0.318	0.163	0.221	1.226	0.632	0.126	0.245	2.194	4.421	0.806	1.418	0.395	0.406	0.072	0.067	0.603	0.309	0.144	0.162	0.180	0.046	0.052	0.123
1331	chr11	18000502	18015419	+	0	NA	intron (NM_012139, intron 8 of 10)	intron (NM_012139, intron 8 of 10)	26749	NM_012139	26297	Hs.32470	NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0.701	nan	1.224	5.852	0.409	0.174	0.061	0.130	0.032	0.991	0.408	0.416	0.597	0.036	0.076	nan	1.011	0.339	0.386	1.962	2.277	3.139	1.402	0.225	0.322	0.531	nan	4.745	3.882	0.437	0.238	0.363	0.578	1.587	2.493	0.153	0.507	3.264	nan	0.769	0.180	0.249	0.021	0.061	0.416	0.019	1.084	0.066	0.074
5108	chr21	36165816	36170053	+	0	NA	intron (NM_001001890, intron 5 of 5)	intron (NM_001001890, intron 5 of 5)	49812	NR_038885	100506385	Hs.120179	NR_038885	ENSG00000234380	LINC01426	lincRNA-uc002yug.2	long intergenic non-protein coding RNA 1426	ncRNA	1.312	0.568	1.617	1.228	1.078	0.606	0.874	0.420	0.039	0.261	0.198	6.400	1.081	0.025	0.087	3.111	6.670	3.347	6.827	2.565	3.234	0.707	0.396	4.874	4.739	0.124	0.303	5.040	4.911	0.604	0.347	12.060	7.414	0.352	0.567	0.581	1.284	nan	0.957	0.199	1.089	0.023	0.467	0.874	6.400	0.608	0.410	5.776	0.483
2383	chr13	96391671	96404728	+	0	NA	intron (NM_006260, intron 4 of 11)	MIRb|SINE|MIR	68806	NM_006260	5611	Hs.59214	NM_006260	ENSG00000102580	DNAJC3	ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.887	1.056	0.807	0.561	0.521	0.208	0.305	0.144	0.024	0.120	0.146	0.724	0.657	0.096	0.067	0.355	0.341	0.290	0.339	0.406	0.400	0.647	0.276	1.111	1.135	0.238	0.194	2.817	2.800	0.365	0.163	0.539	0.577	0.275	0.293	0.462	1.082	0.173	0.168	0.050	0.800	0.066	0.165	0.305	0.724	0.096	2.676	0.182	0.171
8392	chrX	69671565	69676966	+	0	NA	promoter-TSS (NM_001166278)	promoter-TSS (NM_001166278)	-681	NM_001166278	1741	Hs.721586	NM_020730	ENSG00000082458	DLG3	MRX|MRX90|NEDLG|PPP1R82|SAP102|XLMR	discs large MAGUK scaffold protein 3	protein-coding	nan	3.697	1.561	2.939	7.156	4.424	0.877	0.167	0.030	2.050	0.852	2.627	14.057	1.584	0.121	3.763	4.359	4.166	5.134	5.640	6.183	4.856	1.645	4.244	4.937	1.490	2.098	6.240	6.196	0.297	0.219	2.403	4.636	3.321	2.511	1.761	2.997	1.297	0.733	3.698	2.341	0.971	1.350	0.877	2.627	0.883	1.070	2.091	1.419
1305	chr11	11861721	11867664	+	0	NA	intron (NM_017944, intron 1 of 26)	intron (NM_017944, intron 1 of 26)	1722	NM_001330208	55031	Hs.577256	NM_017944	ENSG00000170242	USP47	TRFP	ubiquitin specific peptidase 47	protein-coding	3.368	nan	5.020	5.037	3.369	2.068	2.905	1.128	0.162	2.537	1.298	6.779	10.177	2.460	0.063	nan	11.109	7.056	9.292	9.386	9.229	7.346	3.550	20.022	21.580	5.719	nan	5.699	8.215	6.279	7.217	6.009	11.331	4.948	5.402	4.717	3.647	2.950	nan	2.729	3.549	0.899	1.961	2.905	6.779	0.296	1.299	3.778	1.035
961	chr1	243865348	243904228	+	0	NA	intron (NM_001206729, intron 2 of 13)	MER39|LTR|ERV1	121796	NM_181690	10000	Hs.498292	NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding	nan	1.444	nan	2.407	3.411	1.923	0.979	0.280	0.129	0.465	0.396	2.202	0.586	0.396	0.101	1.264	0.762	0.452	0.565	2.199	3.522	1.280	0.529	0.407	0.347	5.110	5.333	1.010	1.306	4.701	3.273	0.340	0.792	2.540	3.655	1.478	2.606	1.014	0.674	0.039	0.151	0.988	0.810	0.979	2.202	0.473	0.385	0.912	0.670
8246	chr9	116101348	116113121	+	0	NA	Intergenic	Intergenic	-4578	NM_001317944	54836	Hs.614517	NM_017688	ENSG00000119411	BSPRY	-	B-box and SPRY domain containing	protein-coding	1.169	1.929	nan	3.610	1.133	0.615	1.153	0.325	0.192	0.689	0.444	2.140	9.267	0.442	0.074	0.647	1.027	1.238	1.830	2.429	2.397	2.088	0.674	1.576	1.663	0.494	0.737	3.625	nan	1.623	1.282	0.594	1.099	1.746	1.728	0.854	2.379	nan	1.103	1.766	1.224	0.250	0.377	1.153	2.140	0.216	1.850	0.410	0.497
4539	chr2	145251968	145283091	+	0	NA	intron (NM_001171653, intron 2 of 8)	intron (NM_001171653, intron 2 of 8)	-9652	NR_040248	100303491	Hs.560789	NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA	1.953	nan	0.901	0.606	2.371	1.072	0.704	2.097	0.181	0.923	0.628	0.566	2.296	0.131	0.059	0.316	0.255	6.663	9.563	2.090	1.405	0.328	0.107	0.233	0.294	3.078	3.524	0.389	0.484	1.697	1.748	0.216	0.467	0.036	0.047	1.728	2.949	0.470	0.345	0.100	0.086	0.015	0.550	0.704	0.566	0.436	0.059	0.181	1.086
6378	chr5	95765681	95772215	+	0	NA	promoter-TSS (NM_000439)	promoter-TSS (NM_000439)	37	NM_000439	5122	Hs.78977	NM_000439	ENSG00000175426	PCSK1	BMIQ12|NEC1|PC1|PC3|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	nan	6.835	0.598	5.245	3.965	1.830	3.526	0.170	0.122	3.322	1.277	2.621	11.634	0.050	0.102	0.301	0.838	0.105	0.078	11.815	7.222	2.230	0.744	0.042	0.084	5.572	5.885	4.610	5.284	2.955	2.915	0.731	1.323	10.897	13.503	0.181	nan	4.107	2.233	9.446	1.453	2.777	1.445	3.526	2.621	0.252	6.604	0.850	0.038
2686	chr14	77584032	77596248	+	0	NA	Intergenic	Intergenic	17994	NM_174976	283576	Hs.525485	NM_174976	ENSG00000177108	ZDHHC22	C14orf59	zinc finger DHHC-type containing 22	protein-coding	2.899	1.916	3.049	0.966	0.753	0.460	0.410	0.170	0.080	1.141	0.617	1.117	4.036	0.267	0.115	0.701	1.182	0.211	0.265	2.081	2.188	0.467	0.243	0.359	0.375	2.444	2.933	2.547	nan	3.683	3.640	1.266	1.762	2.065	1.879	0.363	0.733	3.686	nan	6.457	2.050	0.727	0.337	0.410	1.117	0.814	0.598	1.710	0.213
6803	chr6	51136242	51169389	+	0	NA	Intergenic	Intergenic	-333853	NR_125840	101927082	Hs.730296	NR_125840		LOC101927082	-	uncharacterized LOC101927082	ncRNA	0.773	0.863	nan	0.217	0.381	0.221	0.247	0.077	0.095	0.047	0.075	0.269	0.448	0.033	0.108	0.605	0.413	6.069	6.192	0.380	0.450	0.135	0.098	0.325	0.302	0.152	0.237	0.196	0.226	0.242	0.080	0.188	0.320	0.158	0.161	0.271	0.456	0.147	0.262	0.022	0.097	0.023	0.118	0.247	0.269	0.015	0.007	0.105	0.075
3234	chr17	1386596	1397121	+	0	NA	intron (NM_001080779, intron 1 of 31)	MIRb|SINE|MIR	-2807	NM_001080950	4641	Hs.286226	NM_033375	ENSG00000197879	MYO1C	MMI-beta|MMIb|NMI|myr2	myosin IC	protein-coding	2.975	1.785	2.177	1.021	4.985	2.666	1.872	1.108	0.243	0.632	0.156	2.783	5.107	8.418	0.264	1.919	3.371	2.921	5.171	2.287	1.819	4.768	1.451	3.300	3.331	1.162	1.839	2.790	4.160	1.208	1.302	0.633	1.239	1.143	0.973	1.385	2.823	0.492	0.350	1.802	2.745	0.170	1.024	1.872	2.783	0.959	2.538	0.809	0.764
6465	chr5	138427109	138494226	+	0	NA	intron (NM_001037633, intron 3 of 10)	intron (NM_001037633, intron 3 of 10)	73398	NM_022464	64374	Hs.483521	NM_022464	ENSG00000120725	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding	1.141	2.070	nan	1.376	0.831	0.397	0.390	0.411	0.130	0.288	0.194	1.571	4.754	0.089	0.128	0.251	0.348	0.340	0.509	2.500	2.814	1.640	0.447	0.348	0.380	1.579	2.056	3.476	2.668	1.014	0.795	0.616	0.976	1.309	1.060	0.884	2.595	1.170	0.588	2.473	3.022	0.371	0.210	0.390	1.571	0.355	0.476	0.459	0.964
5365	chr3	46448118	46466195	+	0	NA	Intergenic	FLAM_C|SINE|Alu	8107	NM_001130910	9034	Hs.535713	NM_003965	ENSG00000121797	CCRL2	ACKR5|CKRX|CRAM|CRAM-A|CRAM-B|HCR	C-C motif chemokine receptor like 2	protein-coding	0.619	nan	nan	1.308	0.447	0.249	0.126	0.042	0.116	0.585	0.193	0.219	0.477	0.028	0.077	0.166	0.110	0.221	0.354	0.854	0.782	3.672	1.077	0.138	0.196	0.107	0.172	2.277	2.030	0.888	0.843	0.144	0.175	1.766	1.817	0.116	0.126	2.980	1.493	0.009	1.009	0.212	0.080	0.126	0.219	0.311	0.095	0.038	0.048
4916	chr20	30908684	30922939	+	0	NA	intron (NM_004798, intron 7 of 8)	AluJb|SINE|Alu	-30336	NM_001164603	171023	Hs.374043	NM_015338	ENSG00000171456	ASXL1	BOPS|MDS	additional sex combs like 1, transcriptional regulator	protein-coding	0.899	2.308	1.156	2.793	1.316	0.694	0.206	0.176	0.147	1.302	0.489	1.500	1.208	0.094	0.134	0.662	0.797	0.336	0.539	1.006	nan	9.444	4.622	0.418	0.474	0.509	0.844	5.665	8.212	0.550	0.373	0.267	0.526	1.776	3.464	0.373	nan	0.954	0.519	0.070	0.196	0.608	0.062	0.206	1.500	0.027	0.435	0.076	0.147
5093	chr21	33554478	33571593	+	0	NA	Intergenic	Intergenic	88341	NM_018944	54069	Hs.190518	NM_018944	ENSG00000159055	MIS18A	B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha	MIS18 kinetochore protein A	protein-coding	1.264	0.793	4.587	0.199	0.264	0.047	0.554	0.060	0.053	0.064	0.062	0.409	0.663	0.013	0.086	0.766	0.969	0.191	0.280	0.496	0.544	2.214	0.305	0.255	0.217	1.062	1.568	0.500	0.801	5.915	7.301	0.181	0.244	1.398	1.293	1.347	2.589	nan	0.665	0.049	0.093	0.318	0.167	0.554	0.409	0.261	0.024	0.047	0.744
3928	chr19	788067	812123	+	0	NA	intron (NM_031991, intron 2 of 13)	AluSx1|SINE|Alu	2703	NM_002819	5725	Hs.172550	NM_002819	ENSG00000011304	PTBP1	HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB	polypyrimidine tract binding protein 1	protein-coding	1.977	1.345	2.790	1.355	1.568	0.874	1.655	0.782	0.227	0.677	0.457	1.730	2.519	1.117	0.097	1.075	1.136	2.742	4.117	2.291	2.258	0.992	0.536	2.525	2.388	1.051	1.663	1.226	nan	2.593	2.652	0.787	1.493	1.314	1.588	1.253	1.402	1.173	0.660	1.216	1.506	0.467	3.328	1.655	1.730	0.515	1.122	0.478	0.381
6900	chr6	109773934	109793705	+	0	NA	TTS (NM_014797)	TTS (NM_014797)	3352	NM_001286613	64780	Hs.33476	NM_022765	ENSG00000135596	MICAL1	MICAL|MICAL-1|NICAL	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	2.149	nan	nan	3.211	0.745	0.405	0.662	0.406	0.114	0.225	0.216	1.042	3.066	0.730	0.137	0.710	1.151	0.781	1.169	2.959	nan	1.739	0.523	0.667	0.718	0.784	1.074	1.402	1.569	nan	1.981	0.265	0.663	0.249	0.194	0.547	0.981	1.209	0.563	3.349	4.329	0.058	0.587	0.662	1.042	0.621	1.043	0.210	0.257
4940	chr20	35722683	35725481	+	0	NA	intron (NM_183404, intron 1 of 20)	CpG	536	NM_001323282	5933	Hs.207745	NM_002895	ENSG00000080839	RBL1	CP107|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	9.574	9.524	6.456	11.297	8.726	3.685	6.753	3.419	0.459	3.182	1.733	9.018	18.690	4.633	0.163	15.648	12.266	8.427	11.392	13.013	nan	18.658	15.489	16.169	16.909	7.756	10.622	12.071	20.095	13.839	14.650	9.985	11.395	5.048	6.091	14.055	9.010	3.470	2.360	5.608	4.884	1.561	4.576	6.753	9.018	1.978	3.801	3.611	4.193
477	chr1	119674127	119686480	+	0	NA	intron (NM_201263, intron 1 of 5)	intron (NM_201263, intron 1 of 5)	-2716	NR_125975	101929147	Hs.697821	NR_125974	ENSG00000231365	LOC101929147	-	uncharacterized LOC101929147	ncRNA	nan	2.021	2.412	2.173	1.601	1.141	1.407	0.989	0.224	0.749	0.426	1.737	4.275	1.458	0.138	1.735	2.010	2.284	3.119	3.984	nan	4.271	3.131	5.486	5.754	5.968	6.757	3.856	5.712	3.542	3.579	1.760	2.131	2.475	2.107	4.037	5.312	2.635	1.704	1.410	1.429	0.276	1.368	1.407	1.737	0.490	1.070	0.784	1.377
7233	chr7	29504031	29526306	+	0	NA	intron (NM_001293071, intron 5 of 11)	L1MB5|LINE|L1	-4160	NM_001293076	1124	Hs.654611	NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding	1.907	1.188	2.362	0.520	0.776	0.381	0.424	0.114	0.135	0.528	0.219	0.631	0.962	0.070	0.145	0.861	1.593	0.249	nan	0.520	0.550	0.851	0.302	0.714	0.792	0.167	0.315	0.503	0.612	0.587	0.397	0.349	0.708	0.353	0.562	2.146	nan	0.846	0.713	0.110	0.203	0.039	0.585	0.424	0.631	0.131	0.306	0.280	3.029
6591	chr6	4076446	4089222	+	0	NA	intron (NR_104464, intron 1 of 5)	MER39B|LTR|ERV1	-3377	NM_173563	222826	Hs.657342	NM_173563	ENSG00000145975	FAM217A	C6orf146	family with sequence similarity 217 member A	protein-coding	1.223	0.705	0.938	0.116	0.879	0.545	0.734	0.119	0.181	0.405	0.212	0.179	0.164	0.085	0.114	0.997	0.776	0.251	0.315	0.330	0.483	2.170	0.710	0.460	0.458	0.251	0.502	0.170	0.237	0.412	0.204	0.258	0.375	1.044	0.892	0.505	1.193	4.049	1.833	0.022	0.077	0.119	0.555	0.734	0.179	0.023	0.080	0.070	0.204
1338	chr11	20016701	20065280	+	0	NA	intron (NM_182964, intron 11 of 37)	L2b|LINE|L2	-3112	NM_001111019	89797	Hs.64341	NM_145117	ENSG00000166833	NAV2	HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2	neuron navigator 2	protein-coding	0.845	nan	1.385	2.032	4.867	2.659	1.260	0.703	0.112	0.938	0.350	0.853	2.571	0.026	0.069	nan	0.997	0.459	1.059	1.270	1.135	3.755	0.877	0.360	0.382	1.585	nan	3.236	2.664	0.615	0.413	1.164	2.188	1.661	1.754	0.106	0.181	2.694	nan	0.662	0.477	0.426	0.368	1.260	0.853	0.092	2.031	1.871	0.040
7416	chr7	104072135	104077274	+	0	NA	intron (NM_199000, intron 1 of 2)	intron (NM_199000, intron 1 of 2)	105600	NM_199000	375612	Hs.659164	NM_199000	ENSG00000187416	LHFPL3	LHFPL4	lipoma HMGIC fusion partner-like 3	protein-coding	nan	0.528	0.667	0.050	0.137	0.031	0.157	0.117	0.126	0.060	0.192	0.152	0.215	0.107	0.191	1.610	0.548	8.573	2.021	0.211	0.406	0.109	0.116	0.824	0.687	0.097	0.240	0.109	0.295	0.354	0.128	0.642	1.120	0.064	0.078	0.396	nan	0.576	0.604	0.022	0.138	0.038	0.125	0.157	0.152		0.020	0.114	0.097
7974	chr8	142725074	142760933	+	0	NA	Intergenic	Intergenic	124671	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA	1.229	0.576	nan	0.069	0.389	0.228	0.478	0.052	0.034	0.044	0.057	0.705	1.616	0.033	0.047	0.215	0.139	0.078	0.091	nan	3.399	nan	0.055	0.118	0.133	0.701	0.872	0.370	0.520	1.046	1.156	0.356	0.426	0.166	0.180	1.343	2.889	0.230	0.278	3.285	1.271	0.045	0.058	0.478	0.705	0.712	0.040	0.149	1.432
3416	chr17	41515612	41536852	+	0	NA	Intergenic	Intergenic	4058	NR_031751	100313779		NR_031751	ENSG00000267151	MIR2117	-	microRNA 2117	ncRNA	1.760	2.761	nan	0.248	0.604	0.279	0.463	0.216	0.157	0.198	0.182	0.120	0.410	0.107	0.095	0.309	0.298	0.202	0.322	0.334	nan	0.276	0.121	0.454	0.483	1.021	1.386	0.217	nan	1.749	1.402	0.269	0.253	2.680	2.713	0.623	2.838	1.006	0.628	0.044	0.235	1.068	0.184	0.463	0.120	0.580	0.086	0.107	0.951
5254	chr22	36780644	36793029	+	0	NA	Intergenic	AluJr|SINE|Alu	-2724	NM_002473	4627	Hs.474751	NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding	2.064	nan	1.789		2.350	1.419	1.477	1.525	0.429	1.009	0.550	3.795	3.693	1.726	0.110	1.395	1.765	2.090	4.033	2.081	1.788	2.619	0.629	1.619	1.501	1.130	nan	3.852	4.055	nan	1.211	0.802	1.725	2.231	2.484	0.759	1.010	1.970	0.895	1.650	1.500	0.827	0.622	1.477	3.795	0.611	1.728	0.773	0.250
6963	chr6	129917118	129931818	+	0	NA	intron (NM_033515, intron 10 of 14)	L1PB2|LINE|L1	106902	NM_033515	93663	Hs.486458	NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding	0.895	0.962	0.693	0.142	0.247	0.131	0.463	0.918	0.102	0.394	0.241	0.033	0.319	0.015	0.129	0.814	0.985	0.471	0.783	0.216	0.228	9.729	3.285	0.854	1.025	0.485	0.699	0.316	0.363	1.507	1.563	0.294	0.578	4.871	6.556	0.353	0.699	1.497	0.618	0.011	0.066	0.899	0.145	0.463	0.033	0.053	0.192	0.379	0.160
3279	chr17	10010171	10024596	+	0	NA	intron (NM_201433, intron 1 of 13)	AluJb|SINE|Alu	-77319	NM_201432	8522	Hs.462214	NM_003644	ENSG00000007237	GAS7	MLL/GAS7	growth arrest specific 7	protein-coding	0.885	0.899	0.774	0.042	0.120	0.057	0.079	0.031	0.083	0.011	0.046	0.058	0.176	0.043	0.141	1.398	2.583	2.221	nan	0.154	0.201	0.112	0.068	0.082	0.068	0.120	0.194	0.153	0.184	nan	0.765	0.419	0.706	0.044	0.018	0.403	0.763	0.086	0.114	0.059	0.058	0.020	0.056	0.079	0.058	0.060	0.049	0.418	0.608
3377	chr17	36606788	36622214	+	0	NA	exon (NM_001199417, exon 2 of 24)	exon (NM_001199417, exon 2 of 24)	29781	NM_001199417	57636	Hs.374446	NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding	nan	1.325	1.235	0.379	1.060	0.552	0.787	1.875	0.332	0.628	0.333	0.367	0.886	0.675	0.068	0.676	1.136	0.787	2.155	nan	1.128	0.796	0.336	1.501	1.534	0.407	0.886	1.429	2.010	nan	5.118	0.457	0.601	0.409	0.459	1.456	2.735	0.922	0.645	0.627	0.384	0.046	0.119	0.787	0.367	0.484	1.709	0.084	0.457
1076	chr10	25303896	25307505	+	0	NA	promoter-TSS (NR_072992)	promoter-TSS (NR_072992)	192	NM_024838	79896	Hs.645274	NM_024838	ENSG00000185875	THNSL1	TSH1	threonine synthase like 1	protein-coding	4.043	2.929	4.013	6.606	6.729	2.977	2.985	3.763	0.090	1.293	0.756	3.454	8.531	3.789	0.120	4.743	5.903	2.943	5.449	7.607	6.390	16.478	9.598	5.342	5.899	5.427	6.943	6.941	12.016	3.278	4.345	1.487	2.275	5.065	3.219	7.799	6.518	3.328	2.461	2.308	3.420	0.943	1.451	2.985	3.454	0.677	1.570	1.698	1.852
766	chr1	198842607	198853343	+	0	NA	intron (NR_040073, intron 2 of 2)	L2a|LINE|L2	-19693	NR_029626	406995		NR_029626	ENSG00000207759	MIR181A1	MIR213|MIRN181A1|MIRN213|hsa-mir-181a-1|mir-181a-1|mir-213	microRNA 181a-1	ncRNA	0.873	nan	1.677	0.091	0.690	0.402	1.890	1.326	0.180	1.215	0.915	0.049	0.983	0.111	0.131	0.378	0.292	0.881	1.749	0.701	0.853	0.467	0.158	0.352	0.363	4.176	nan	0.579	0.500	0.498	0.342	0.089	0.155	1.106	2.364	0.502	0.932	0.389	0.372	0.010	0.099	0.196	0.022	1.890	0.049	0.067	0.095	0.010	0.230
449	chr1	112385032	112408748	+	0	NA	intron (NR_046783, intron 1 of 1)	MER53|DNA|hAT	2637	NR_046783	100874295	Hs.738190	NR_046783	ENSG00000232558	KCND3-IT1	-	KCND3 intronic transcript 1	ncRNA	nan	1.344	1.241	0.411	1.241	0.608	0.530	0.120	0.115	0.244	0.119	0.065	0.785	0.018	0.107	0.428	0.552	0.083	0.126	0.735	nan	3.649	1.024	0.133	0.150	2.018	2.507	0.795	1.278	0.570	0.450	0.527	0.633	0.098	0.089	0.376	0.721	3.455	1.729	0.450	0.788	0.024	0.863	0.530	0.065	0.489	0.218	0.200	0.162
7524	chr7	142392658	142409463	+	0	NA	Intergenic	PABL_B-int|LTR|ERV1	26929	NM_001190487	100463482		NM_001190487	ENSG00000270672	MTRNR2L6	HN6	MT-RNR2-like 6	protein-coding	0.970	0.576	1.332	0.089	0.185	0.038	0.068	0.093	0.125	0.835	0.479	0.100	0.793	0.051	0.138	0.323	0.212	0.153	0.215	0.245	0.213	0.199	0.118	0.338	0.364	0.176	0.246	0.091	0.111	1.260	1.285	0.151	0.226	0.279	0.225	0.540	1.903	4.215	nan	0.286	0.122	0.102	0.514	0.068	0.100	0.104		0.036	0.565
1574	chr11	92417047	92441824	+	0	NA	intron (NM_001008781, intron 2 of 24)	intron (NM_001008781, intron 2 of 24)	219359	NR_135091	105369431	Hs.532389	NR_135091		LOC105369431	-	uncharacterized LOC105369431	ncRNA	0.846	nan	0.663	0.360	0.323	0.111	0.499	0.163	0.058	0.115	0.122	0.256	1.320	0.042	0.144	1.397	1.406	1.091	nan	0.616	0.758	0.563	0.154	1.766	1.804	1.027	1.356	1.575	1.504	0.341	0.264	0.904	1.368	2.222	2.310	0.280	nan	1.018	0.633	0.924	0.241	0.622	0.112	0.499	0.256	0.062	0.195	0.761	0.099
6536	chr5	163338085	163344920	+	0	NA	Intergenic	Intergenic	408968	NM_013283	27430	Hs.54642	NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2B	protein-coding	nan	0.813	1.392	0.038	0.382	0.234	0.693	0.433	0.023	0.093	0.035	0.070	0.199	0.032	0.114	0.584	0.552	0.540	1.939	0.124	0.171	0.086	0.018	0.074	0.048	0.440	0.595	0.092	0.153	2.185	2.998	1.641	1.857	7.961	8.005	0.445	1.647	0.448	0.517	0.008	0.039	2.875	2.577	0.693	0.070	1.254	0.045	2.353	0.306
1579	chr11	92919917	92962230	+	0	NA	Intergenic	MIRb|SINE|MIR	-9932	NM_152313	120103	Hs.148766	NM_152313	ENSG00000180773	SLC36A4	PAT4	solute carrier family 36 member 4	protein-coding	0.836	nan	1.015	4.563	8.731	4.370	0.879	0.147	0.057	1.216	0.532	7.405	11.008	0.300	0.124	1.829	1.813	0.262	nan	5.054	6.705	3.220	1.329	1.887	2.040	0.999	1.285	7.560	6.158	0.911	0.743	0.763	1.190	3.404	3.959	0.521	nan	2.066	0.988	6.386	2.107	1.243	1.845	0.879	7.405	0.059	2.379	0.600	0.149
7438	chr7	113721866	113731014	+	0	NA	promoter-TSS (NR_033766)	promoter-TSS (NR_033766)	75	NR_033766	93986	Hs.282787	NM_014491	ENSG00000128573	FOXP2	CAGH44|SPCH1|TNRC10	forkhead box P2	protein-coding	nan	0.727	4.851	2.130	1.744	0.755	0.888	1.137	0.174	3.174	1.538	4.758	6.563	0.475	0.115	0.871	0.587	2.090	2.597	0.426	0.512	0.757	0.257	3.018	3.110	3.579	4.692	3.793	8.081	2.901	3.398	0.173	0.518	10.551	9.091	1.849	2.358	1.004	0.591	0.061	6.087	3.010	1.683	0.888	4.758	0.766	1.723	0.142	0.648
6254	chr5	50462248	50501263	+	0	NA	Intergenic	Intergenic	-197203	NM_002202	3670	Hs.505	NM_002202	ENSG00000016082	ISL1	ISLET1|Isl-1	ISL LIM homeobox 1	protein-coding	nan	nan	0.894	0.138	0.464	0.214	0.445	0.075	0.058	0.415	0.292	0.566	0.533	0.067	0.129	0.226	0.182	0.432	0.585	1.409	2.069	nan	0.932	0.070	0.051	0.168	0.203	0.344	0.473	nan	2.325	0.052	0.114	6.823	8.202	0.318	0.665	0.322	0.304	0.027	0.137	2.386	0.398	0.445	0.566	0.388	0.107	0.015	0.117
4484	chr2	121939148	121947551	+	0	NA	Intergenic	Intergenic	99429	NM_014553	29842	Hs.156471	NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding	0.889	nan	nan	3.011	0.328	0.343	0.809	0.045	0.037	1.276	0.260	0.935	1.636	0.103	0.053	1.174	1.546	0.244	0.382	0.473	0.688	12.054	4.487	3.903	4.425	0.188	0.332	5.370	6.492	0.360	0.265	0.161	0.406	1.293	1.161	0.185	0.335	1.387	0.885	0.658	0.381	0.157	0.113	0.809	0.935	0.206	0.212	0.030	0.073
2989	chr15	91403800	91417946	+	0	NA	promoter-TSS (NM_002569)	promoter-TSS (NM_002569)	-949	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding	nan	nan	nan	1.075	2.158	1.083	0.941	1.180	0.108	0.775	0.431	2.481	5.614	0.528	0.116	3.584	4.342	1.389	2.211	2.010	1.991	nan	0.669	3.839	4.016	0.679	1.087	6.223	7.414	nan	1.474	2.387	4.461	1.660	1.465	0.578	nan	1.658	0.735	0.312	2.318	0.496	0.902	0.941	2.481	0.223	2.451	1.961	0.097
2833	chr15	31629012	31659691	+	0	NA	intron (NM_001302461, intron 1 of 1)	intron (NM_001302461, intron 1 of 1)	25293	NM_015995	51621	Hs.376443	NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel like factor 13	protein-coding	1.155	nan	nan	1.322	1.175	0.606	0.803	1.210	0.200	1.292	0.800	4.081	2.759	0.142	0.055	1.891	3.636	0.404	0.819	4.456	5.020	2.019	0.523	0.465	0.505	1.041	1.393	2.390	2.884	2.164	2.359	1.812	3.230	1.588	1.494	0.377	0.512	0.688	0.440	2.046	1.758	0.409	1.213	0.803	4.081	1.007	0.677	3.366	0.115
8356	chrUn_gl000216	57969	69448	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA									nan	4.367	nan	0.291	nan	0.448	nan	0.331	2.595	0.303	1.066	0.261	1.223	0.108	0.728	1.433	0.617	0.482	0.591	1.177	2.068	0.371	0.273	0.424	0.432	nan	1.613	0.600	0.575	nan	0.347	0.505	0.727	0.357	0.745	0.518	1.218	0.292	0.603	0.091	0.348	0.231	0.118	nan	0.261	0.084	0.116	0.199	0.373
3914	chr18	76733414	76763882	+	0	NA	intron (NM_171999, intron 1 of 2)	intron (NM_171999, intron 1 of 2)	8373	NM_171999	27164	Hs.700557	NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding	nan	nan	0.717	2.046	0.485	0.337	1.142	0.042	0.048	0.196	0.130	4.181	4.821	0.071	0.067	0.260	0.126	0.356	0.635	2.075	nan	1.681	0.561	0.140	0.120	0.078	0.132	1.772	nan	0.292	0.144	0.052	0.088	0.635	0.829	0.087	0.091	0.397	0.272	0.036	0.035	0.091	0.955	1.142	4.181		0.054	0.016	0.028
7265	chr7	42923109	42934761	+	0	NA	Intergenic	MER107|DNA|DNA	22754	NM_001099858	79020	Hs.698120	NM_024054	ENSG00000136197	C7orf25	-	chromosome 7 open reading frame 25	protein-coding	0.851	1.677	nan	0.544	0.275	0.097	0.621	0.129	0.014	0.135	0.139	0.359	1.888	0.316	0.134	0.407	0.209	0.306	0.371	0.683	0.678	0.826	0.224	1.870	2.112	0.241	0.360	1.040	1.440	0.464	0.296	0.387	0.442	0.197	0.394	0.264	0.520	0.935	0.738	5.153	1.321	0.041	0.034	0.621	0.359	0.051	1.416	0.136	0.117
3692	chr18	23984111	23998141	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-11833	NR_110762	100506787	Hs.734746	NR_110762		LINC01543	-	long intergenic non-protein coding RNA 1543	ncRNA	0.759	0.938	0.706	0.149	0.384	0.138	0.439	0.090	0.093	0.089	0.137	0.094	0.577	0.062	0.075	1.843	1.635	6.013	nan	0.481	0.695	0.293	0.147	3.332	3.664	0.228	0.226	0.268	0.376	0.316	0.174	1.427	1.958	0.159	0.227	0.291	0.591	1.677	1.196	0.024	0.051	0.040	0.017	0.439	0.094	0.152	0.007	1.308	0.095
8065	chr9	14514151	14548023	+	0	NA	Intergenic	Intergenic	-132105	NM_001190738	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding	nan	nan	1.121	0.362	0.373	0.215	0.536	0.095	0.085	2.754	1.881	0.184	1.221	0.048	0.067	0.237	0.174	0.224	0.316	0.582	0.797	10.001	3.264	0.111	0.107	46.103	44.762	0.258	0.288	0.478	0.305	0.917	2.124	0.801	0.576	1.080	3.090	1.675	1.220	1.694	1.835	0.096	0.052	0.536	0.184	0.132	1.054	1.434	1.737
5770	chr3	190281560	190286025	+	0	NA	intron (NM_001167931, intron 3 of 11)	intron (NM_001167931, intron 3 of 11)	51952	NM_001167931	3556	Hs.478673	NM_002182	ENSG00000196083	IL1RAP	C3orf13|IL-1RAcP|IL1R3	interleukin 1 receptor accessory protein	protein-coding	nan	1.225	1.072	0.196	0.426	0.291	0.115	2.435	0.071	0.088	0.149	0.080	nan	0.069	0.095	2.837	2.931	9.464	11.337	0.766	0.478	0.574	0.216	1.077	1.022	0.154	0.285	1.109	1.101	3.522	2.653	0.336	0.407	0.073	0.112	1.424	3.263	0.162	0.472	0.050	0.039	0.022		0.115	0.080	0.043	0.023	0.022	0.794
5406	chr3	77114013	77134814	+	0	NA	intron (NM_002942, intron 1 of 25)	intron (NM_002942, intron 1 of 25)	-22750	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding	0.964	0.864	0.950	0.102	0.237	0.077	0.049	0.047	0.038	0.103	0.079	0.040	0.278	0.141	0.073	0.228	0.114	0.179	nan	0.271	0.332	1.431	0.576	0.128	0.077	1.213	1.332	0.504	0.643	0.460	0.160	0.061	0.110	0.755	1.001	3.363	nan	0.361	0.296	0.220	0.085	0.109	1.009	0.049	0.040	0.079	0.098	0.019	1.835
3726	chr18	31851247	31864873	+	0	NA	Intergenic	Intergenic	-54545	NM_001198546	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding	nan	0.893	0.878	1.582	0.564	0.305	0.432	0.044	0.060	1.719	0.825	0.366	0.708	0.039	0.086	0.424	0.362	0.158	0.228	1.338	1.434	6.915	3.550	0.132	0.133	0.754	0.920	nan	0.770	0.393	0.162	0.087	0.186	7.103	6.287	0.208	0.364	6.237	3.111	0.129	0.158	1.408	0.214	0.432	0.366	0.064	0.097	0.051	0.064
7906	chr8	124242512	124254051	+	0	NA	intron (NM_032847, intron 3 of 5)	intron (NM_032847, intron 3 of 5)	5357	NM_032847	84933	Hs.707401	NM_032847	ENSG00000189376	C8orf76	-	chromosome 8 open reading frame 76	protein-coding	nan	nan	8.537	1.715	1.098	0.606	0.272	0.732	0.183	0.574	0.301	1.680	nan	0.486	0.101	0.679	0.778	1.082	1.466	2.569	2.739	1.643	0.630	nan	nan	2.772	3.442	1.448	1.680	2.670	2.395	0.826	1.461	2.032	3.142	2.949	4.893	1.041	0.485	0.339	0.617	0.760	2.232	0.272	1.680	0.987	1.996	0.223	1.670
2944	chr15	72518134	72525298	+	0	NA	intron (NM_001206798, intron 1 of 10)	MIRc|SINE|MIR	347	NM_001206799	5315	Hs.534770	NM_002654	ENSG00000067225	PKM	CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1	pyruvate kinase, muscle	protein-coding	4.108	3.461	4.261	2.233	6.037	3.132	3.801	4.661	0.746	2.384	1.907	4.856	10.236	3.374	0.088	2.994	3.853	4.525	8.186	7.874	6.216	4.211	1.247	3.090	3.108	3.636	5.037	4.113	5.683	7.571	14.133	2.311	4.718	2.815	3.137	6.666	6.298	1.714	1.003	1.954	3.729	0.716	2.005	3.801	4.856	1.666	2.449	1.647	2.827
3144	chr16	53113091	53135559	+	0	NA	intron (NM_025134, intron 1 of 38)	intron (NM_025134, intron 1 of 38)	35380	NM_025134	80205	Hs.59159	NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding	nan	nan	nan	1.645	2.228	1.133	4.024	2.017	0.336	0.585	0.296	1.375	3.314	0.082	0.069	3.403	3.822	1.559	1.525	3.045	2.405	2.477	0.641	2.736	2.951	1.270	nan	nan	nan	nan	3.521	1.295	1.717	2.479	2.594	0.615	nan	nan	1.196	1.646	0.867	0.691	0.710	4.024	1.375	1.531	1.186	0.981	0.259
5059	chr21	10849737	10860786	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	135682	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding	3.521	3.630	nan	0.694	0.993	0.568	0.646	0.418	2.825	0.340	1.265	0.440	1.636	0.343	1.433	1.542	0.574	0.680	0.722	1.326	2.470	0.633	0.525	0.789	0.831	1.435	2.262	0.907	0.818	2.187	0.542	0.640	1.008	0.524	0.858	0.757	1.312	0.718	1.219	0.192	0.633	0.317	0.180	0.646	0.440	0.131	0.185	0.252	0.344
387	chr1	85910280	85931465	+	0	NA	intron (NM_001134445, intron 2 of 6)	intron (NM_001134445, intron 2 of 6)	10017	NM_012137	23576	Hs.713411	NM_012137	ENSG00000153904	DDAH1	DDAH|DDAH-1|DDAHI|HEL-S-16	dimethylarginine dimethylaminohydrolase 1	protein-coding	2.110	nan	nan	0.859	0.827	0.537	0.580	0.829	0.121	0.273	0.179	0.652	1.892	1.431	0.139	0.780	1.058	0.935	1.361	1.738	1.743	1.030	0.327	1.269	1.300	1.877	2.587	3.024	3.471	1.502	1.796	0.378	0.756	0.392	0.232	1.604	4.652	1.382	0.939	0.459	0.561	0.089	0.656	0.580	0.652	0.100	0.014	0.203	0.683
1913	chr12	32382481	32427643	+	0	NA	intron (NM_001003398, intron 2 of 8)	(TA)n|Simple_repeat|Simple_repeat	144877	NM_001714	636	Hs.505202	NM_001714	ENSG00000151746	BICD1	BICD	BICD cargo adaptor 1	protein-coding	1.310	nan	1.175	0.229	0.363	0.228	0.209	0.085	0.097	0.125	0.136	0.255	0.339	0.084	0.128	0.461	0.331	0.522	0.624	0.564	0.743	0.436	0.207	0.514	0.508	1.341	1.623	0.294	0.270	1.827	1.410	0.184	0.233	0.777	0.902	0.841	3.217	0.498	0.450	0.057	0.307	0.173	0.316	0.209	0.255	0.479	0.068	0.057	0.801
4944	chr20	36141995	36157721	+	0	NA	promoter-TSS (NM_001317074)	promoter-TSS (NM_001317074)	250	NM_001322802	4826	Hs.504703	NM_005386	ENSG00000053438	NNAT	Peg5	neuronatin	protein-coding	3.193	2.623	2.922	3.345	2.342	1.223	2.448	1.145	0.123	0.538	0.373	4.079	4.136	1.056	0.111	2.634	2.518	1.727	2.608	3.384	nan	4.034	1.715	3.578	3.959	3.244	4.515	4.334	6.224	4.869	4.255	1.768	2.496	1.028	0.923	2.929	nan	1.250	0.675	1.327	1.645	0.136	5.208	2.448	4.079	0.833	1.082	0.615	1.749
7156	chr7	10276076	10288086	+	0	NA	Intergenic	L1PA5|LINE|L1	608181	NR_002790	168741	Hs.545134	NR_002790		PER4	-	period circadian clock 3 pseudogene	pseudo	nan	1.010	nan	0.125	0.708	0.320	0.395	0.148	0.126	0.090	0.129	0.070	0.376	0.072	0.153	nan	0.306	0.224	0.418	0.302	0.404	0.955	0.351	0.446	0.371	7.021	6.387	0.237	0.315	0.420	0.175	0.178	0.166	1.075	1.632	0.443	0.797	0.705	0.383	0.023	0.052	0.245	0.219	0.395	0.070	0.056	0.126	0.140	0.049
6663	chr6	21986540	22045627	+	0	NA	intron (NR_015410, intron 6 of 11)	AluSc5|SINE|Alu	131339	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA	1.403	0.917	nan	0.445	0.342	0.147	0.592	0.737	0.163	0.098	0.118	0.606	nan	4.237	0.175	0.508	0.464	0.884	nan	0.804	0.780	nan	0.243	0.523	0.537	1.426	1.867	1.177	0.991	0.902	0.602	0.270	0.470	0.301	0.343	0.387	0.897	0.635	0.536	0.138	0.122	0.057	0.126	0.592	0.606	0.083	0.132	0.127	0.194
257	chr1	41819149	41886059	+	0	NA	Intergenic	Intergenic	-11263	NR_135817	101929901		NR_135817	ENSG00000229901	LOC101929901	-	uncharacterized LOC101929901	ncRNA	16.836	1.452	nan	0.794	3.002	1.555	1.857	0.852	0.197	1.856	1.003	2.325	3.514	0.252	0.088	1.124	2.309	0.727	1.475	4.751	4.576	1.372	0.501	1.539	1.511	2.469	nan	nan	7.820	2.153	1.882	1.391	nan	1.164	0.852	1.249	2.693	1.573	0.866	6.517	2.726	0.520	1.311	1.857	2.325	1.003	0.744	1.591	0.831
951	chr1	243415553	243434018	+	0	NA	intron (NM_006642, intron 1 of 17)	intron (NM_006642, intron 1 of 17)	5478	NM_006642	10806	Hs.591530	NM_006642	ENSG00000054282	SDCCAG8	BBS16|CCCAP|CCCAP SLSN7|HSPC085|NPHP10|NY-CO-8|SLSN7|hCCCAP	serologically defined colon cancer antigen 8	protein-coding	nan	2.453	nan	2.289	2.950	1.481	1.741	1.412	0.244	1.615	0.940	2.036	3.933	1.045	0.096	2.855	3.215	4.321	5.869	5.166	4.414	3.399	1.263	5.934	6.183	2.098	2.506	1.637	2.221	2.663	2.957	0.715	1.457	2.106	2.318	2.577	3.007	1.735	1.054	1.490	0.980	0.549	1.373	1.741	2.036	0.632	0.809	0.732	0.779
4750	chr2	232520352	232553249	+	0	NA	Intergenic	Intergenic	-36435	NM_002823	5757	Hs.459927	NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin, alpha	protein-coding	3.301	nan	5.054	3.772	5.162	2.914	2.249	0.418	0.119	0.771	0.554	2.260	1.271	1.543	0.115	2.435	3.446	0.971	1.868	3.943	3.305	4.385	1.915	1.915	1.921	0.674	0.917	7.678	nan	4.768	6.110	1.160	1.647	2.947	2.780	1.362	2.727	1.022	0.702	6.148	1.079	1.070	2.646	2.249	2.260	0.909	2.829	0.744	0.793
85	chr1	11739684	11753873	+	0	NA	intron (NM_001127325, intron 1 of 8)	intron (NM_001127325, intron 1 of 8)	4900	NM_001127325	10459	Hs.19400	NM_006341	ENSG00000116670	MAD2L2	FANCV|MAD2B|POLZ2|REV7	MAD2 mitotic arrest deficient-like 2 (yeast)	protein-coding	3.243	2.347	nan	2.817	2.174	1.142	2.705	0.841	0.287	0.567	0.346	1.069	4.999	0.979	0.152	2.369	2.550	1.794	2.462	7.839	6.598	3.193	1.145	1.257	nan	0.949	nan	5.786	9.004	nan	0.935	0.980	1.329	1.278	1.485	1.738	2.882	0.741	0.627	2.454	1.368	0.351	0.263	2.705	1.069	1.261	0.493	0.376	0.374
809	chr1	204582110	204594400	+	0	NA	exon (NM_006338, exon 3 of 3)	exon (NM_006338, exon 3 of 3)	66226	NM_006338	10446	Hs.26312	NM_006338	ENSG00000170382	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding	1.510	1.163	6.763	0.105	0.780	0.316	0.658	0.100	0.158	0.205	0.200	0.192	0.663	0.048	0.102	0.575	0.707	0.463	0.578	0.839	0.814	0.447	0.224	nan	nan	1.311	1.765	0.413	0.629	0.460	0.547	0.289	0.259	0.219	0.323	1.100	3.465	0.716	0.669	0.209	0.397	0.061	0.104	0.658	0.192	0.143	0.376	0.049	1.199
7857	chr8	104509991	104517058	+	0	NA	intron (NM_001100117, intron 1 of 23)	CpG-25931	548	NM_001100117	9699	Hs.655271	NM_014677	ENSG00000176406	RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding	11.138	nan	nan	12.048	12.269	7.081	5.691	0.180	0.090	2.482	1.176	14.326	23.909	3.005	0.113	4.574	7.084	0.105	0.207	19.483	17.587	11.905	4.296	0.960	0.943	4.630	nan	10.442	13.227	nan	9.404	8.711	15.674	9.663	8.198	5.476	nan	3.762	1.908	9.383	9.412	3.033	6.706	5.691	14.326	1.139	6.245	6.254	2.156
2200	chr12	125115897	125182348	+	0	NA	Intergenic	L1ME3|LINE|L1	-97112	NM_001206654	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding	1.531	1.294	2.016	0.159	0.465	0.214	0.466	0.469	0.192	0.175	0.146	0.481	0.977	0.248	0.108	0.518	0.883	0.332	0.905	0.813	0.864	nan	0.307	0.278	0.330	2.276	2.749	0.952	1.204	3.361	3.236	0.361	0.344	0.352	0.517	1.331	3.795	1.192	0.849	0.620	0.394	0.092	0.117	0.466	0.481	0.712	0.570	0.094	1.232
6926	chr6	119642172	119653225	+	0	NA	intron (NM_005907, intron 2 of 12)	LTR18B|LTR|ERVL	23233	NM_005907	4121	Hs.102788	NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding	nan	0.685	nan	0.198	0.155	0.116	0.229	0.069	0.074	0.072	0.044	0.066	0.342	0.010	0.115	1.388	1.482	7.467	4.956	0.185	nan	nan	0.074	1.437	1.634	0.612	nan	0.480	0.409	0.398	0.183	1.384	2.341	0.593	0.851	0.192	nan	0.649	0.457	0.020	0.138	0.136	0.035	0.229	0.066	0.035	0.092	0.744	0.067
7580	chr8	5461525	5472891	+	0	NA	Intergenic	Intergenic	-614880	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding	0.428	0.662	0.390	0.573	0.176	0.049	0.158	0.046	0.059	0.070	0.096	1.974	0.402	0.057	0.116	0.247	0.146	0.191	0.312	7.565	7.499	0.131	0.075	0.132	0.175	0.139	0.203	1.547	1.690	nan	0.142	0.070	0.087	0.066	0.058	0.122	0.152	1.399	1.032	0.235	0.717	0.008		0.158	1.974	0.009	0.009	0.009	0.022
736	chr1	187084368	187094062	+	0	NA	intron (NR_126347, intron 1 of 3)	intron (NR_126347, intron 1 of 3)	27241	NR_126347	104169671		NR_126347		LINC01036	-	long intergenic non-protein coding RNA 1036	ncRNA	nan	nan	1.839	0.160	0.208	0.150	0.178	0.146	0.118	0.098	0.181	0.112	0.360	0.034	0.118	0.685	0.838	0.345	0.430	0.460	nan	0.757	0.320	nan	0.473	5.277	5.713	0.239	0.321	0.403	0.272	0.221	0.455	0.174	0.181	0.360	nan	0.425	0.504	0.035	0.174	0.020	0.098	0.178	0.112	0.050	0.042	0.082	0.076
8310	chr9	135497130	135521439	+	0	NA	intron (NR_136309, intron 14 of 18)	L1MC4a|LINE|L1	29429	NM_001322343	64794	Hs.660767	NM_022779	ENSG00000125485	DDX31	PPP1R25	DEAD-box helicase 31	protein-coding	nan	0.766	1.138	0.582	0.695	0.456	0.318	0.119	0.099	0.684	0.394	0.793	1.778	0.068	0.082	0.903	1.002	1.779	2.437	1.416	1.189	nan	0.125	0.475	0.480	2.028	1.836	0.486	0.644	2.055	1.468	0.915	1.537	1.789	2.497	0.557	0.934	3.104	1.603	0.160	0.058	0.553	0.075	0.318	0.793	0.463	0.644	0.615	0.244
539	chr1	151252394	151257393	+	0	NA	promoter-TSS (NR_135595)	promoter-TSS (NR_135595)	105	NM_020832	57592	Hs.186756	NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding	7.703	nan	7.828	3.138	4.980	1.861	3.728	3.706	0.480	2.631	1.171	3.252	21.716	5.023	0.150	5.454	5.465	7.540	11.053	8.127	nan	8.767	5.921	11.325	11.957	3.359	4.656	9.920	14.602	6.059	5.696	5.966	9.049	5.972	7.273	9.328	10.844	2.725	1.831	3.465	9.121	0.796	2.431	3.728	3.252	0.957	5.802	2.754	4.042
5569	chr3	139237441	139281884	+	0	NA	promoter-TSS (NM_001130992)	promoter-TSS (NM_001130992)	-991	NM_001130993	5947	Hs.529571	NM_002899	ENSG00000114115	RBP1	CRABP-I|CRBP|CRBP1|CRBPI|RBPC	retinol binding protein 1	protein-coding	2.147	nan	nan	0.304	1.339	0.654	1.482	0.090	0.095	1.487	0.857	0.810	2.654	0.181	0.060	0.829	1.296	1.340	3.227	0.869	0.968	5.595	1.686	0.484	0.534	0.822	1.287	0.484	0.764	nan	5.269	0.246	0.457	1.944	1.446	1.071	3.028	1.505	0.910	1.880	0.502	0.564	0.168	1.482	0.810	0.931	0.144	0.118	1.368
2847	chr15	39463547	39509899	+	0	NA	Intergenic	Intergenic	-56147	NR_144507	400360	Hs.376109	NM_207445		C15orf54	-	chromosome 15 open reading frame 54	ncRNA	0.657	nan	nan	0.119	0.204	0.110	0.191	1.099	0.118	0.125	0.103	0.279	0.373	0.101	0.082	0.307	0.225	0.979	4.513	0.227	0.279	0.270	0.089	0.155	0.133	0.305	0.553	0.422	0.516	0.526	0.239	0.159	0.288	0.133	0.202	0.188	0.318	0.457	0.495	0.017	0.073	0.023	0.069	0.191	0.279	0.050	0.083	0.056	0.093
8300	chr9	132948976	132964592	+	0	NA	intron (NM_014286, intron 1 of 7)	intron (NM_014286, intron 1 of 7)	-6088	NM_001128826	23413	Hs.642946	NM_014286	ENSG00000107130	NCS1	FLUP|FREQ	neuronal calcium sensor 1	protein-coding	nan	1.552	0.981	0.503	0.811	0.502	1.816	0.369	0.257	0.421	0.323	0.586	7.614	0.188	0.071	0.276	0.357	0.450	1.144	1.894	2.025	nan	0.237	0.392	0.326	0.585	0.920	1.190	1.824	1.188	1.427	0.358	0.562	0.683	0.729	0.482	0.813	0.979	0.640	1.673	0.600	0.067	0.428	1.816	0.586	1.197	0.368	0.209	0.149
3339	chr17	27319761	27348623	+	0	NA	promoter-TSS (NM_001290202)	promoter-TSS (NM_001290202)	-734	NM_001290202	124925	Hs.21837	NM_178860	ENSG00000063015	SEZ6	BSRPC	seizure related 6 homolog	protein-coding	nan	nan	nan	0.348	2.182	1.130	1.107	0.086	0.067	0.563	0.326	1.435	1.483	0.086	0.149	1.488	2.046	1.211	0.455	1.245	1.372	4.895	1.164	0.205	0.238	0.761	1.132	1.614	2.073	3.365	3.344	1.952	4.186	2.151	2.211	0.931	nan	2.146	1.158	2.055	0.847	0.738	0.278	1.107	1.435	0.288	0.457	2.388	0.637
6347	chr5	87021951	87053711	+	0	NA	Intergenic	Intergenic	-328981	NM_001239	902	Hs.292524	NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding	0.751	1.151	0.663	0.099	0.174	0.086	0.064	0.082	0.083	0.123	0.114	0.041	0.377	0.041	0.101	0.247	0.123	0.178	0.275	0.124	0.173	0.155	0.063	0.125	0.123	0.635	0.628	0.249	0.256	0.425	0.183	0.068	0.137	6.655	7.971	0.205	nan	0.736	0.509	0.013	0.118	1.959	0.169	0.064	0.041	0.003	0.073	0.028	0.058
4369	chr2	56267230	56278626	+	0	NA	intron (NR_126406, intron 1 of 2)	intron (NR_126406, intron 1 of 2)	1533	NR_126406	104355290	Hs.580331	NR_126406		MIR217HG	MIR216AHG|MIR216BHG	MIR217 host gene	ncRNA	1.192	nan	2.177	0.323	0.238	0.197	1.362	0.099	0.042	3.623	2.145	0.428	6.390	0.029	0.127	0.406	0.278	0.208	0.321	2.488	3.040	5.316	2.461	0.292	0.253	0.742	1.047	0.741	0.615	0.540	0.349	0.162	0.290	2.786	2.402	0.908	2.390	2.545	0.999	0.024	2.639	0.616	0.108	1.362	0.428	0.068	0.046	0.069	0.739
520	chr1	149852882	149862240	+	0	NA	promoter-TSS (NM_003517)	promoter-TSS (NM_003517)	671	NM_003528	8349	Hs.2178	NM_003528	ENSG00000184678	HIST2H2BE	GL105|H2B|H2B.1|H2BFQ|H2BGL105|H2BQ	histone cluster 2 H2B family member e	protein-coding	8.121	nan	7.403	5.001	6.762	3.149	3.909	3.651	0.326	4.668	1.931	4.630	27.359	5.360	0.198	9.252	13.545	10.261	14.228	13.015	7.622	14.141	7.326	15.771	16.006	6.610	7.678	8.833	10.469	10.737	14.602	4.534	10.899	10.243	9.524	10.853	12.081	3.863	2.577	5.457	10.079	1.568	3.069	3.909	4.630	1.446	4.208	3.092	3.698
2865	chr15	46085442	46098899	+	0	NA	intron (NR_135680, intron 1 of 4)	L1MC4a|LINE|L1	94777	NR_135680	105370802	Hs.447522	NR_135680	ENSG00000259200	LOC105370802	-	uncharacterized LOC105370802	ncRNA	0.819	1.084	nan	1.735	0.903	0.441	0.417	0.072	0.060	0.719	0.615	1.335	1.006		0.082	0.536	0.392	0.412	0.336	1.782	1.630	7.342	2.292	0.691	0.763	0.160	nan	0.873	1.027	0.955	0.561	0.330	0.356	4.762	5.204	0.419	0.740	1.814	1.185	0.169	0.363	1.235	0.146	0.417	1.335	0.408	0.451	0.191	0.121
4617	chr2	178071211	178080331	+	0	NA	Intergenic	Intergenic	-1651	NM_001330247	220988	Hs.516539	NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	5.181	3.831	4.328	4.168	6.321	3.344	3.493	2.071	0.336	2.046	1.008	3.431	6.921	2.330	0.100	4.760	3.605	5.728	7.743	4.793	4.550	5.362	4.985	13.461	14.269	4.144	4.931	10.474	15.509	8.563	9.897	4.287	6.449	4.268	5.367	8.525	6.960	2.177	1.174	3.632	1.777	1.003	2.153	3.493	3.431	1.405	1.070	2.520	2.070
2642	chr14	61913322	61921625	+	0	NA	intron (NM_006255, intron 5 of 13)	intron (NM_006255, intron 5 of 13)	119439	NR_110417	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA	nan	nan	0.936	1.940	1.271	0.559	0.758	0.208	0.176	0.309	0.215	0.260	0.748	0.078	0.137	0.362	0.182	0.276	0.309	2.525	2.640	2.135	0.411	nan	0.314	0.940	1.375	1.314	nan	1.314	1.174	0.191	0.345	1.040	0.565	0.285	0.441	5.182	2.331	0.737	0.963	0.288	1.979	0.758	0.260	0.136	0.465	0.134	0.086
5867	chr4	39306835	39315720	+	0	NA	intron (NM_002913, intron 12 of 24)	L1MB7|LINE|L1	56724	NM_001204747	5981	Hs.507475	NM_002913	ENSG00000035928	RFC1	A1|MHCBFB|PO-GA|RECC1|RFC|RFC140	replication factor C subunit 1	protein-coding	0.866	0.540	1.065	0.105	0.416	0.268	0.186	0.691	0.055	0.458	0.245	0.268	0.176	0.074	0.105	0.536	0.510	1.086	0.926	0.714	0.930	0.360	0.201	0.165	0.180	0.816	1.353	1.098	0.760	2.785	1.899	0.421	0.491	0.068	0.085	0.351	0.892	4.908	2.145	0.019	0.296		0.207	0.186	0.268	0.177	0.242	0.090	0.208
2354	chr13	79167507	79184078	+	0	NA	exon (NM_006237, exon 2 of 2)	exon (NM_006237, exon 2 of 2)	1903	NM_006237	5457	Hs.654522	NM_006237	ENSG00000152192	POU4F1	BRN3A|Oct-T1|RDC-1|brn-3A	POU class 4 homeobox 1	protein-coding	nan	nan	0.680	0.726	0.618	0.443	1.152	0.111	0.059	0.292	0.156	1.040	1.366	0.052	0.068	3.090	4.335	0.370	0.454	1.899	1.588	0.929	0.283	0.328	0.371	0.703	0.975	0.477	0.544	1.063	1.177	0.698	1.221	0.281	0.214	0.157	0.459	0.885	0.493	0.396	0.858	0.017	2.400	1.152	1.040	0.093	0.690	0.256	0.065
4714	chr2	217614093	217658362	+	0	NA	Intergenic	(TTCC)n|Simple_repeat|Simple_repeat	-75955	NM_000599	3488	Hs.607212	NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin like growth factor binding protein 5	protein-coding	nan	1.803	nan	3.250	3.321	1.804	0.627	0.149	0.098	1.361	0.796	4.111	1.042	0.052	0.126	0.299	0.187	0.244	0.699	2.876	2.694	3.932	1.473	0.276	0.297	1.211	1.430	4.156	nan	0.386	0.204	0.320	0.498	1.976	1.811	0.315	0.676	1.838	0.945	0.734	0.302	0.534	1.150	0.627	4.111	0.128	0.583	0.254	0.257
3479	chr17	57228025	57238616	+	0	NA	promoter-TSS (NM_182620)	promoter-TSS (NM_182620)	460	NM_018304	55771	Hs.631750	NM_018304	ENSG00000068489	PRR11	-	proline rich 11	protein-coding	5.181	3.062	2.623	3.839	5.579	2.831	2.773	2.426	0.498	2.878	1.444	3.055	8.758	6.086	0.254	6.936	5.750	5.505	7.808	6.849	6.256	5.896	3.298	nan	11.674	4.263	5.414	nan	nan	10.943	9.738	3.228	5.299	6.400	8.002	7.064	6.350	2.593	1.443	2.496	3.096	1.548	2.189	2.773	3.055	1.068	1.247	1.926	1.901
7698	chr8	61820320	61828032	+	0	NA	Intergenic	Intergenic	56131	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA	7.430	3.812	1.686	4.056	5.041	2.199	1.641	0.118	0.084	0.305	0.117	1.942	2.387	0.141	0.085	1.683	2.890	0.654	1.142	2.007	1.789	11.792	3.535	0.209	0.308	0.541	nan	3.438	3.441	nan	7.199	0.727	1.352	8.606	7.724	3.944	5.909	4.044	2.297	1.917	3.304	2.500	5.717	1.641	1.942	38.170	5.651	0.204	3.234
5494	chr3	117114674	117128552	+	0	NA	Intergenic	MIRb|SINE|MIR	481335	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA	0.829	nan	1.039	1.489	0.972	0.451	0.314	0.075	0.057	1.328	0.721	0.664	1.371	1.977	0.056	1.285	1.412	0.271	0.408	1.366	nan	7.775	2.759	0.216	0.293	nan	1.212	1.889	1.738	1.287	1.157	0.235	0.518	0.279	0.305	0.569	1.087	4.221	1.834	2.257	0.917	0.048	0.142	0.314	0.664	0.009	3.918	0.281	0.304
6871	chr6	90260579	90277851	+	0	NA	intron (NM_014942, intron 1 of 15)	intron (NM_014942, intron 1 of 15)	-2822	NM_001242811	22881	Hs.702213	NM_014942	ENSG00000135299	ANKRD6	-	ankyrin repeat domain 6	protein-coding	nan	0.979	nan	0.527	0.458	0.260	1.139	0.099	0.075	0.209	0.215	2.059	0.974	0.082	0.134	0.734	1.399	0.532	0.706	0.775	0.917	nan	0.226	0.210	0.188	0.722	nan	0.436	0.490	nan	1.097	0.284	0.672	3.961	4.105	0.364	0.585	0.596	0.451	1.332	0.160	1.197	0.152	1.139	2.059	0.201	0.201	0.341	0.192
175	chr1	29816730	29834815	+	0	NA	Intergenic	MIRb|SINE|MIR	-149146	NR_110758	101928460	Hs.434659	NR_110758	ENSG00000230523	LINC01756	-	long intergenic non-protein coding RNA 1756	ncRNA	1.027	0.742	nan	1.268	2.767	1.545	0.300	0.041	0.027	0.376	0.273	3.717	2.794	0.060	0.109	0.273	0.329	0.120	0.183	4.331	4.870	1.566	0.230	0.128	0.119	0.204	0.357	2.283	2.168	0.969	0.761	0.368	0.475	0.242	0.207	0.337	0.777	2.219	1.123	1.113	0.873	0.090	0.030	0.300	3.717	0.245	1.568	0.093	0.212
584	chr1	156039343	156105466	+	0	NA	intron (NM_001282625, intron 3 of 12)	intron (NM_001282625, intron 3 of 12)	-12057	NM_170707	4000	Hs.594444	NM_005572	ENSG00000160789	LMNA	CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1	lamin A/C	protein-coding	nan	nan	2.574	0.694	1.241	0.670	3.334	1.690	0.477	0.849	0.499	1.988	9.830	1.138	0.133	1.547	2.542	2.768	5.750	2.619	nan	1.640	0.765	1.108	1.220	1.799	2.636	2.572	4.630	1.320	1.163	1.498	2.441	1.432	1.445	1.986	4.544	1.313	0.832	1.130	2.193	0.314	1.250	3.334	1.988	0.828	2.087	1.149	0.970
8114	chr9	34327015	34337953	+	0	NA	intron (NM_001244390, intron 1 of 2)	intron (NM_001244390, intron 1 of 2)	2980	NM_001161	318	Hs.493767	NM_001161	ENSG00000164978	NUDT2	APAH1	nudix hydrolase 2	protein-coding	2.212	nan	1.980	2.223	2.456	1.302	1.517	1.325	0.224	1.173	0.702	2.211	5.763	1.001	0.103	2.205	2.306	8.551	8.506	3.937	3.182	5.425	2.807	2.814	2.822	2.840	3.670	2.232	3.833	2.355	1.959	1.395	1.989	3.266	3.962	2.589	2.576	3.201	1.979	1.373	0.999	0.672	1.116	1.517	2.211	0.356	0.688	0.828	0.644
1882	chr12	27903287	27908343	+	0	NA	intron (NM_021821, intron 7 of 7)	HY1|scRNA|scRNA	18394	NM_001146221	100287284	Hs.202178	NM_001146221	ENSG00000205693	MANSC4	-	MANSC domain containing 4	protein-coding	nan	nan	nan	0.766	1.216	0.948	2.676	0.059	0.032	0.174	0.195	0.753	0.622	0.156	0.097	0.215	0.222	0.776	1.737	0.584	0.721	3.083	0.423	0.993	0.943	0.586	0.887	3.352	4.045	0.404	0.283	0.204	0.370	2.471	3.643	0.516	1.114	1.412	0.807	0.154	0.185	0.453	0.536	2.676	0.753	10.882	0.263	0.137	0.316
1421	chr11	57069871	57104245	+	0	NA	intron (NM_033396, intron 3 of 11)	AluSq2|SINE|Alu	5355	NM_033396	85456	Hs.530730	NM_033396	ENSG00000149115	TNKS1BP1	TAB182	tankyrase 1 binding protein 1	protein-coding	1.335	1.220	1.208	1.355	1.304	0.846	1.307	1.295	0.121	0.625	0.326	1.844	2.765	1.507	0.121	2.252	2.357	1.705	2.606	3.285	3.367	1.741	0.875	2.437	2.320	1.434	1.999	3.483	4.371	1.407	1.351	1.196	1.985	1.185	1.112	1.028	1.914	1.681	0.728	1.271	1.259	0.304	0.466	1.307	1.844	0.656	1.234	0.602	0.351
7819	chr8	98088526	98109244	+	0	NA	intron (NM_016134, intron 7 of 7)	intron (NM_016134, intron 7 of 7)	191291	NM_033512	85453	Hs.173094	NM_033512	ENSG00000180543	TSPYL5	-	TSPY like 5	protein-coding	5.385	3.145	5.797	0.207	0.392	0.127	0.139	0.747	0.140	0.031	0.067	0.184	0.468	0.026	0.078	0.211	0.112	0.446	nan	0.461	0.522	0.391	0.200	0.218	0.225	0.215	0.406	0.781	0.742	0.444	0.251	0.153	0.261	0.082	0.123	5.626	11.179	0.215	0.340	0.032	0.085	0.042	0.038	0.139	0.184	0.043	0.015	0.057	3.437
4033	chr19	36247646	36250858	+	0	NA	intron (NM_001039887, intron 1 of 11)	CpG	208	NM_001039887	148137	Hs.527982	NM_144692	ENSG00000167595	PROSER3	C19orf55	proline and serine rich 3	protein-coding	7.857	3.345	3.931	10.998	4.906	2.717	4.386	2.260	0.389	1.673	1.231	4.655	23.091	4.993	0.218	3.618	3.646	4.449	6.411	7.626	6.907	8.632	3.188	8.735	9.516	6.059	7.277	6.761	8.003	nan	8.126	4.255	6.377	4.855	5.068	5.000	7.981	3.968	2.371	3.938	5.422	1.278	2.287	4.386	4.655	1.511	3.616	3.072	3.329
6321	chr5	71575625	71605203	+	0	NA	intron (NM_001286748, intron 4 of 11)	L1MC|LINE|L1	25670	NM_001286748	23107	Hs.482491	NM_015084	ENSG00000113048	MRPS27	MRP-S27|S27mt	mitochondrial ribosomal protein S27	protein-coding	1.598	nan	1.529	0.462	0.719	0.318	0.586	1.552	0.145	0.312	0.331	0.624	0.751	0.471	0.118	0.916	0.875	0.811	1.031	2.102	1.711	nan	0.556	0.927	0.838	5.451	nan	1.091	1.254	3.654	3.043	0.453	0.712	1.229	1.691	1.113	2.360	1.438	0.692	1.147	0.949	0.430	0.617	0.586	0.624	0.534	1.385	0.257	0.701
3021	chr16	1926168	1969502	+	0	NA	Intergenic	AluJr|SINE|Alu	-13603	NR_033914	64735	Hs.662737	NR_033914	ENSG00000281219	LINC00254	C16orf32|NCRNA00254	long intergenic non-protein coding RNA 254	ncRNA	0.698	nan	1.279	1.095	1.205	0.566	0.251	0.084	0.219	0.533	0.326	1.988	4.035	0.092	0.084	0.209	0.197	0.122	0.165	1.290	1.115	nan	1.138	0.252	0.257	0.134	nan	2.181	2.205	0.509	0.239	0.161	0.212	1.177	1.069	0.304	0.829	1.569	0.857	1.787	2.813	0.226	0.079	0.251	1.988	0.158	0.445	0.036	0.196
8340	chr9	139692960	139703960	+	0	NA	TTS (NR_024580)	TTS (NR_024580)	-3914	NM_001173988	55684	Hs.370555	NM_017995	ENSG00000196642	RABL6	C9orf86|PARF|RBEL1|pp8875	RAB, member RAS oncogene family-like 6	protein-coding	nan	2.486	3.776	4.514	2.037	1.137	2.205	1.006	0.309	1.811	0.886	3.272	6.481	1.009	0.090	1.966	2.218	2.710	3.880	5.251	5.036	nan	1.164	2.038	1.864	1.157	1.779	4.889	6.808	3.765	3.483	1.367	2.361	2.287	2.454	2.239	2.577	2.970	1.439	4.123	2.071	0.629	0.503	2.205	3.272	0.711	2.998	0.647	0.502
7895	chr8	119566919	119572960	+	0	NA	intron (NM_001101676, intron 2 of 4)	intron (NM_001101676, intron 2 of 4)	-63301	NR_038210	552860	Hs.571527	NR_038210	ENSG00000281641	SAMD12-AS1	C8orf26|NCRNA00252	SAMD12 antisense RNA 1	ncRNA	nan	nan	0.887	0.176	0.289	0.106	0.021	0.334	0.096	0.078	0.039	0.105	0.555		0.081	0.880	0.666	8.091	2.668	0.455	0.510	nan	0.158	0.931	nan	0.256	nan	0.345	0.403	0.461	0.234	0.330	0.578	0.041	0.059	0.307	0.952	0.520	0.321	0.037	0.044		0.013	0.021	0.105		0.054	0.292	0.287
7883	chr8	114192274	114215926	+	0	NA	intron (NM_052900, intron 3 of 68)	L1PA16|LINE|L1	185282	NM_198124	114788	Hs.91381	NM_052900	ENSG00000164796	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding	nan	nan	0.951	0.115	0.195	0.129	0.044	0.098	0.136	0.352	0.256	0.086	0.570	0.036	0.080	0.374	0.402	0.063	0.086	0.334	0.393	nan	1.105	0.660	nan	1.118	nan	0.249	0.253	0.420	0.170	0.166	0.187	2.039	2.437	0.298	0.514	0.526	0.413	0.009	0.093	0.632	0.067	0.044	0.086	0.008	0.099	0.033	0.047
2670	chr14	73469021	73477433	+	0	NA	intron (NM_021260, intron 2 of 11)	AluSz|SINE|Alu	-19563	NM_001281735	53349	Hs.335106	NM_021260	ENSG00000165861	ZFYVE1	DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1	zinc finger FYVE-type containing 1	protein-coding	1.462	0.700	0.878	0.166	0.301	0.231	0.327	0.315	0.210	0.135	0.113	0.185	0.423	0.118	0.186	0.309	0.252	0.362	0.580	0.517	0.558	0.592	0.142	0.617	0.730	0.432	0.607	0.529	nan	0.802	0.521	0.305	0.262	0.258	0.238	0.566	1.004	4.644	nan	0.113	0.325	0.055	0.347	0.327	0.185	0.104	0.302	0.065	0.323
5100	chr21	34912025	34918441	+	0	NA	promoter-TSS (NM_001291412)	promoter-TSS (NM_001291412)	-35	NM_001136006	2618	Hs.473648	NM_000819	ENSG00000159131	GART	AIRS|GARS|GARTF|PAIS|PGFT|PRGS	phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase	protein-coding	6.739	3.432	5.888	5.824	6.101	3.147	5.116	3.308	0.176	2.715	0.979	5.813	14.380	4.092	0.106	10.674	8.355	7.591	9.967	9.588	10.036	6.252	4.475	19.606	21.441	6.589	8.226	8.788	13.499	14.648	13.793	5.494	9.013	8.591	11.471	10.381	9.497	nan	2.906	4.561	5.964	1.676	3.259	5.116	5.813	1.832	2.801	2.844	2.694
930	chr1	234644906	234691376	+	0	NA	promoter-TSS (NR_038426)	promoter-TSS (NR_038426)	-616	NR_038426	100506795	Hs.448989	NR_038426	ENSG00000231768	LINC01354	-	long intergenic non-protein coding RNA 1354	ncRNA	1.835	2.069	1.887	0.834	1.663	0.836	2.528	1.518	0.235	1.223	0.555	1.723	2.773	0.138	0.115	0.633	1.087	1.148	3.874	1.611	1.579	nan	1.790	0.442	0.467	0.630	1.065	nan	2.115	0.736	0.621	0.398	0.513	0.927	1.607	0.744	1.915	nan	0.813	0.664	1.101	0.263	0.730	2.528	1.723	0.390	0.868	0.320	0.347
3848	chr18	56805060	56839637	+	0	NA	intron (NM_033280, intron 3 of 5)	intron (NM_033280, intron 3 of 5)	15259	NM_001307941	90701	Hs.45107	NM_033280	ENSG00000166562	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C, signal peptidase complex subunit	protein-coding	nan	1.706	1.692	6.337	1.486	0.726	0.770	0.058	0.042	1.452	0.876	6.525	6.186	0.113	0.088	1.299	1.404	0.696	0.881	8.542	9.561	3.380	1.588	1.492	1.600	0.308	0.484	9.629	8.099	0.781	0.644	0.540	0.895	1.966	2.236	0.641	0.701	nan	2.014	1.805	1.559	0.664	0.385	0.770	6.525	0.122	0.864	0.159	0.158
5274	chr22	40390477	40419311	+	0	NA	intron (NM_138435, intron 1 of 4)	intron (NM_138435, intron 1 of 4)	13941	NM_138435	113828	Hs.197680	NM_138435	ENSG00000133477	FAM83F	-	family with sequence similarity 83 member F	protein-coding	1.786	nan	2.016	2.764	0.491	0.345	1.159	0.070	0.116	0.636	0.289	0.745	2.708	0.098	0.106	1.599	2.109	0.344	0.584	0.414	0.417	2.595	0.777	0.697	0.727	1.500	nan	2.058	2.517	nan	1.854	0.399	0.654	4.556	6.485	0.666	1.573	1.654	0.864	2.896	0.701	1.654	2.663	1.159	0.745	1.841	1.601	0.162	0.211
2972	chr15	84822720	84834466	+	0	NA	Intergenic	Intergenic	-12649	NM_001243531	100505679	Hs.726826	NM_001243531	ENSG00000259511	UBE2Q2L	-	ubiquitin conjugating enzyme E2 Q2 like	protein-coding	0.518	nan	0.629	0.122	0.286	0.144	0.124	0.084	0.083	0.134	0.113	0.152	0.320	0.028	0.046	0.244	0.273	0.136	0.208	0.329	0.403	0.350	0.122	0.157	0.197	0.167	0.326	0.360	0.632	10.716	10.039	0.221	0.363	0.053	0.034	0.530	1.080	0.286	0.222	0.048	0.294	0.008	0.042	0.124	0.152	0.191	0.017	0.077	0.181
648	chr1	167677130	167692492	+	0	NA	Intergenic	Intergenic	-6376	NM_024569	9019	Hs.493919	NM_003953	ENSG00000197965	MPZL1	MPZL1b|PZR|PZR1b|PZRa|PZRb	myelin protein zero like 1	protein-coding	2.905	nan	3.681	1.281	1.470	0.813	1.420	1.329	0.273	0.999	0.500	1.280	4.746	1.717	0.148	2.112	2.132	1.900	2.731	2.721	nan	3.066	0.894	1.880	1.982	2.717	3.452	2.196	nan	2.684	3.012	2.015	3.821	2.058	1.670	3.465	3.863	2.917	1.300	0.851	2.754	0.417	0.837	1.420	1.280	0.577	0.979	1.352	0.979
6617	chr6	12986640	13016040	+	0	NA	intron (NM_001322313, intron 1 of 12)	intron (NM_001322313, intron 1 of 12)	-12548	NM_001322314	221692	Hs.436996	NM_030948	ENSG00000112137	PHACTR1	RPEL|RPEL1|dJ257A7.2	phosphatase and actin regulator 1	protein-coding	0.949	nan	0.646	0.553	0.361	0.223	0.283	0.104	0.131	0.391	0.226	0.341	0.318	0.022	0.112	0.835	0.752	0.570	0.572	0.851	0.803	5.702	2.610	0.645	0.664	0.499	0.636	0.037	0.063	0.495	0.266	0.449	0.570	0.254	0.231	0.210	0.342	1.361	0.774	0.023	0.410	0.042	0.312	0.283	0.341	0.066	0.045	0.231	0.046
6627	chr6	15904377	15912867	+	0	NA	Intergenic	Intergenic	-220695	NM_013262	29116	Hs.484738	NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding	1.155	nan	3.047	3.475	0.778	0.433	0.281	0.116	0.057	0.055	0.109	9.763	1.374	0.051	0.062	3.613	3.011	1.001	2.547	4.102	3.157	2.374	1.068	1.281	1.491	0.370	0.432	3.929	5.070	0.610	0.506	1.442	2.661	0.155	0.078	0.447	1.129	0.546	0.505	0.137	0.179	0.034	2.947	0.281	9.763	0.068	0.068	1.506	0.234
4453	chr2	103618584	103630953	+	0	NA	Intergenic	Intergenic	-23881	NR_135530	105373519		NR_135530	ENSG00000224095	LINC01935	-	long intergenic non-protein coding RNA 1935	ncRNA	0.582	nan	1.035	0.056	0.250	0.103	0.202	0.096	0.041	0.176	0.132	0.107	0.615	0.027	0.068	0.789	2.007	0.472	0.374	0.676	0.986	0.164	0.101	0.294	0.230	5.934	6.304	0.324	0.361	1.949	1.947	0.678	1.894	0.034	0.032	0.331	0.372	0.437	0.579	0.046	0.015	0.008	0.180	0.202	0.107	0.658	0.049	3.095	0.507
4973	chr20	46186469	46211594	+	0	NA	intron (NM_006534, intron 1 of 22)	AluJb|SINE|Alu	68430	NM_001174088	8202	Hs.592142	NM_006534	ENSG00000124151	NCOA3	ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP	nuclear receptor coactivator 3	protein-coding	nan	nan	1.020	0.243	2.169	1.072	0.214	0.770	0.198	0.499	0.371	0.564	0.723	0.121	0.116	4.885	5.012	2.800	2.323	0.564	0.594	nan	0.496	7.195	7.312	0.836	1.340	2.026	1.757	nan	0.849	2.162	3.377	0.794	0.693	0.802	2.163	0.656	0.426	0.046	0.135	0.159	0.158	0.214	0.564	0.080	0.210	2.423	0.816
1589	chr11	95430361	95441305	+	0	NA	Intergenic	Intergenic	87121	NM_144664	143684	Hs.288304	NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding	0.889	nan	0.780	0.072	0.329	0.268	0.379	0.095	0.089	0.100	0.167	0.066	0.627	0.138	0.132	0.854	0.823	0.555	nan	0.621	0.827	0.192	0.121	0.616	0.555	4.332	4.501	0.224	0.271	0.495	0.259	0.502	0.664	0.535	0.682	0.664	nan	0.860	0.896	1.090	0.057	0.113	0.065	0.379	0.066	0.027	0.130	0.054	0.530
7657	chr8	41591147	41613841	+	0	NA	intron (NM_000037, intron 2 of 42)	L1MC4a|LINE|L1	52646	NM_000037	286	Hs.654438	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	ankyrin 1	protein-coding	0.812	nan	0.682	0.276	2.095	1.183	0.307	0.326	0.099	0.520	0.320	1.802	1.695	0.072	0.079	0.847	1.440	0.420	0.519	1.905	1.713	2.954	0.907	0.298	0.293	0.360	0.519	1.207	0.830	0.962	0.745	0.381	0.534	0.675	0.466	0.459	1.038	1.993	1.253	1.882	2.719	0.106	0.031	0.307	1.802	0.260	0.442	0.412	0.487
7245	chr7	32287560	32300136	+	0	NA	intron (NM_001322059, intron 1 of 17)	LTR88a|LTR|Gypsy?	45168	NM_001191058	5137	Hs.143821	NM_005020	ENSG00000154678	PDE1C	Hcam3|cam-PDE 1C|hCam-3	phosphodiesterase 1C	protein-coding	2.572	1.261	2.116	0.151	0.312	0.025	0.203	0.091	0.039	0.046	0.098	0.353	0.336	0.060	0.159	0.545	0.401	0.240	0.218	0.905	nan	0.108	0.083	0.380	0.409	1.851	nan	nan	nan	4.267	3.980	0.184	0.185	0.084	0.093	3.558	12.238	0.654	0.606	0.057	0.078		2.076	0.203	0.353	0.724	0.056	0.023	4.317
1059	chr10	19039663	19044889	+	0	NA	Intergenic	LTR9|LTR|ERV1	93963	NM_178815	221079	Hs.25362	NM_178815	ENSG00000165997	ARL5B	ARL8	ADP ribosylation factor like GTPase 5B	protein-coding	nan	0.592	0.507	1.421	0.338	0.183	0.073	0.188	0.124	0.334	0.141	0.184	0.154	0.010	0.085	2.350	3.091	0.350	0.293	0.237	0.361	17.305	12.264	0.316	0.253	0.097	0.308	2.405	1.833	0.230	0.074	0.303	0.653	1.263	1.031	0.141	0.211	0.525	0.584	0.022	0.034	0.073	0.015	0.073	0.184	0.036	0.173	0.209	0.046
2683	chr14	77370685	77436573	+	0	NA	Intergenic	Intergenic	-22352	NR_133913	105370578	Hs.574184	NR_133913	ENSG00000258602	LINC01629	linc-KIAA1737-2	long intergenic non-protein coding RNA 1629	ncRNA	4.242	2.561	1.947	1.254	3.646	2.005	6.014	2.545	0.648	0.663	0.429	2.677	5.708	1.101	0.140	1.592	2.084	0.945	1.976	4.267	3.709	2.622	0.925	1.618	1.795	2.029	2.748	3.146	nan	4.028	3.534	1.173	1.661	2.311	2.310	1.140	1.689	3.090	nan	6.148	4.466	0.681	2.277	6.014	2.677	1.360	1.344	1.292	0.449
6698	chr6	30673434	30698995	+	0	NA	promoter-TSS (NM_014641)	promoter-TSS (NM_014641)	-756	NM_014641	9656	Hs.653495	NM_014641	ENSG00000137337	MDC1	NFBD1	mediator of DNA damage checkpoint 1	protein-coding	nan	2.307	nan	3.821	3.947	2.153	3.039	1.785	0.555	1.412	0.828	4.631	7.197	2.783	0.176	4.235	3.770	4.153	nan	nan	4.674	4.947	2.209	7.392	7.630	2.321	3.061	5.275	6.158	4.029	4.350	1.981	2.824	3.870	3.978	4.111	4.025	2.545	1.334	3.974	2.164	0.987	1.532	3.039	4.631	0.699	1.668	1.295	1.894
5206	chr22	24176504	24192111	+	0	NA	Intergenic	Intergenic	-3108	NM_001002862	91319	Hs.593679	NM_198440	ENSG00000099958	DERL3	C22orf14|IZP6|LLN2|derlin-3	derlin 3	protein-coding	1.760	nan	1.953	0.514	0.637	0.250	0.600	0.212	0.083	0.362	0.131	0.649	2.492	0.251	0.054	1.460	1.900	0.649	0.949	0.957	0.958	1.641	1.264	0.655	0.720	0.899	1.300	1.194	2.507	1.088	0.921	0.736	0.771	0.741	1.328	0.821	1.781	2.941	1.589	0.230	0.702	0.134	0.168	0.600	0.649	0.337	1.180	0.209	0.499
7057	chr6	154903973	154941524	+	0	NA	Intergenic	AluJr|SINE|Alu	-90995	NM_173515	154043	Hs.16064	NM_173515	ENSG00000153721	CNKSR3	MAGI1	CNKSR family member 3	protein-coding	nan	1.654	0.915	2.208	1.537	0.749	0.475	0.145	0.129	1.146	0.511	1.053	2.547	0.055	0.127	0.541	0.349	2.159	1.924	0.903	nan	4.610	3.778	0.435	0.459	0.113	0.177	5.405	5.520	0.548	0.222	0.156	0.218	0.572	0.717	0.317	nan	2.119	0.917	0.879	0.968	0.117	0.081	0.475	1.053	0.054	2.290	0.050	0.084
3349	chr17	28693018	28710975	+	0	NA	Intergenic	Intergenic	-3946	NM_001304	1362	Hs.446079	NM_001304	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding	nan	nan	nan	1.666	1.409	0.819	0.545	0.532	0.098	1.192	0.382	2.268	1.655	0.465	0.172	0.723	0.868	0.691	1.206	0.860	0.965	4.835	1.191	0.577	0.680	0.894	1.176	3.522	4.373	1.895	1.317	0.870	1.490	2.194	1.946	1.325	nan	2.688	1.419	0.090	0.114	0.558	0.229	0.545	2.268	0.211	1.166	0.634	1.135
3644	chr18	3578264	3673410	+	0	NA	intron (NM_001003809, intron 4 of 9)	intron (NM_001003809, intron 4 of 9)	22102	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA	1.021	1.278	1.301	0.537	0.492	0.249	0.391	1.699	0.371	0.308	0.188	1.162	nan	10.086	0.345	0.519	0.538	1.220	2.580	1.375	1.514	nan	0.611	0.741	0.734	0.464	nan	2.615	2.518	nan	0.264	0.474	0.674	0.937	1.515	0.467	nan	nan	0.808	1.816	0.440	0.129	0.183	0.391	1.162	0.092	0.812	0.507	0.233
2019	chr12	70077669	70138021	+	0	NA	non-coding (NR_110072, exon 4 of 4)	non-coding (NR_110072, exon 4 of 4)	-14649	NM_001282615	144453	Hs.280782	NM_032735	ENSG00000127325	BEST3	VMD2L3	bestrophin 3	protein-coding	nan	1.306	0.704	0.855	2.717	1.505	0.391	0.211	0.073	1.334	0.922	1.764	2.448	0.096	0.079	0.512	0.492	0.623	0.879	2.952	3.205	1.472	0.573	1.225	1.152	0.989	1.473	nan	2.250	0.430	0.261	0.351	0.580	1.247	1.203	0.261	0.406	nan	2.862	0.485	1.222	0.348	0.232	0.391	1.764	0.131	0.276	0.171	0.074
6179	chr5	13177783	13191195	+	0	NA	Intergenic	Intergenic	516518	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA	nan	nan	nan	0.260	0.178	0.121	0.751	0.216	0.099	0.247	0.221	0.134	nan	0.033	0.112	0.616	0.555	2.256	1.601	0.308	0.355	0.133	0.091	0.119	0.120	4.903	5.096	0.325	0.362	1.312	1.038	0.166	0.206	1.876	1.526	0.138	nan	1.586	0.965	0.024	0.106	0.468	0.036	0.751	0.134	0.036	0.083	0.074	0.018
361	chr1	68286181	68304807	+	0	NA	intron (NM_018841, intron 1 of 3)	intron (NM_018841, intron 1 of 3)	-2477	NR_040077	100289178	Hs.677603	NR_040077	ENSG00000232284	GNG12-AS1	-	GNG12 antisense RNA 1	ncRNA	2.288	1.238	nan	0.202	0.666	0.284	0.536	1.395	0.145	0.380	0.195	0.128	1.689	0.186	0.109	0.343	0.251	1.013	1.637	0.644	0.695	2.260	0.498	0.702	0.705	nan	nan	1.418	nan	1.276	1.144	0.243	0.365	0.548	0.863	2.406	5.097	1.467	0.963	0.024	0.157	0.088	0.047	0.536	0.128	0.172	0.207	0.049	2.470
202	chr1	36101410	36108890	+	0	NA	intron (NM_001199779, intron 1 of 5)	intron (NM_001199779, intron 1 of 5)	2002	NM_001199779	5690	Hs.471441	NM_002794	ENSG00000126067	PSMB2	HC7-I	proteasome subunit beta 2	protein-coding	3.731	nan	5.266	5.343	2.677	1.546	1.688	2.002	0.454	3.131	2.040	4.744	5.335	2.291	0.252	2.628	2.368	4.177	5.731	4.831	4.986	nan	1.120	7.496	7.501	2.729	3.730	11.575	17.691	nan	3.473	2.688	4.749	2.007	2.616	3.536	3.806	3.029	nan	2.482	2.341	0.280	0.858	1.688	4.744	0.872	0.919	1.896	0.778
3282	chr17	11387264	11423657	+	0	NA	intron (NM_001173462, intron 3 of 4)	AluY|SINE|Alu	-96288	NM_001372	1770	Hs.567259	NM_001372	ENSG00000007174	DNAH9	DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20	dynein axonemal heavy chain 9	protein-coding	1.355	0.690	1.014	0.036	0.140	0.084	0.074	0.031	0.066	0.064	0.065	0.046	0.257	0.015	0.032	0.737	0.662	0.179	nan	0.160	0.220	0.105	0.075	0.054	0.057	0.079	0.178	0.127	0.137	nan	0.084	0.076	0.106	0.018	0.035	1.159	3.745	0.106	0.160	0.003	0.024	0.013	0.026	0.074	0.046	0.288	0.025	0.011	2.845
1984	chr12	59302692	59320242	+	0	NA	intron (NM_153377, intron 1 of 18)	intron (NM_153377, intron 1 of 18)	1860	NM_001136051	121227	Hs.253736	NM_153377	ENSG00000139263	LRIG3	LIG3	leucine rich repeats and immunoglobulin like domains 3	protein-coding	nan	1.576	1.387	1.803	0.972	0.456	1.119	2.228	0.193	2.479	1.317	0.833	4.919	0.302	0.077	nan	0.281	0.732	1.317	0.867	nan	4.990	2.391	1.254	1.328	2.293	nan	1.846	nan	0.958	0.871	0.301	0.630	5.553	5.629	0.776	1.131	2.409	1.417	0.186	1.053	1.547	0.316	1.119	0.833	0.708	1.353	0.219	0.387
7491	chr7	133283871	133299317	+	0	NA	intron (NM_021807, intron 9 of 17)	L2|LINE|L2	218047	NR_120513	101928861	Hs.675747	NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA	nan	nan	nan	0.108	0.461	0.116	0.180	0.381	0.084	0.243	0.344	0.606	0.355	0.147	0.143	0.441	0.334	0.199	0.337	0.607	0.873	nan	0.192	0.225	0.304	3.155	nan	0.293	0.302	nan	0.244	0.191	0.304	0.656	0.473	0.348	0.873	0.980	nan	0.213	0.139	0.103	0.041	0.180	0.606	0.044	0.105	0.038	0.129
5558	chr3	134651742	134667468	+	0	NA	intron (NM_004441, intron 2 of 15)	L2a|LINE|L2	145506	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding	1.065	nan	nan	0.247	0.772	0.386	0.694	0.108	0.204	0.148	0.113	0.137	0.601	0.014	0.060	0.228	0.144	0.270	0.267	0.741	0.628	6.065	2.438	0.229	0.246	0.390	0.554	0.340	0.483	nan	0.316	0.156	0.204	0.421	0.417	0.460	0.548	0.245	0.293	0.106	0.455	0.097	0.058	0.694	0.137	0.080	0.045	0.057	0.062
307	chr1	53942473	53954579	+	0	NA	Intergenic	Intergenic	23454	NM_033067	63948	Hs.131654	NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding	1.048	0.578	1.095	0.072	0.263	0.107	0.220	0.234	0.084	0.051	0.082	0.060	0.456	0.105	0.076	0.543	0.773	0.251	0.362	0.729	0.768	0.698	0.322	0.340	0.315	3.555	3.594	0.724	0.834	0.996	1.189	0.337	0.480	0.180	0.150	0.380	nan	0.398	0.494	0.133	0.059	0.023	0.080	0.220	0.060	0.611	0.300	0.164	0.093
3472	chr17	55882864	55891891	+	0	NA	Intergenic	Intergenic	40056	NM_016070	51649	Hs.5836	NM_016070	ENSG00000181610	MRPS23	CGI-138|HSPC329|MRP-S23	mitochondrial ribosomal protein S23	protein-coding	1.989	3.071	1.322	0.399	9.105	4.256	2.496	0.654	0.054	1.770	0.692	2.797	1.775	0.072	0.105	0.471	0.450	0.308	0.699	1.642	1.952	6.490	4.771	nan	0.486	0.660	1.185	nan	nan	3.049	2.753	0.177	0.331	6.354	5.600	2.259	6.784	2.764	1.472	0.315	0.020	1.491	0.712	2.496	2.797	0.043	0.236	0.085	1.728
8333	chr9	138969725	139014923	+	0	NA	Intergenic	Intergenic	-5193	NM_144653	138151	Hs.112895	NM_144653	ENSG00000148411	NACC2	BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB	NACC family member 2	protein-coding	nan	2.742	3.219	1.939	2.387	1.330	1.861	0.985	0.252	0.692	0.465	2.906	4.349	0.727	0.081	1.024	1.663	1.330	2.934	4.946	4.194	nan	0.659	0.421	0.405	0.789	1.121	4.980	5.897	2.451	2.800	1.007	1.743	1.924	1.832	0.518	0.604	1.128	0.660	6.409	2.298	0.677	0.507	1.861	2.906	0.627	1.993	0.872	0.180
6229	chr5	34179124	34194846	+	0	NA	Intergenic	Intergenic	-62352	NR_037951	100534612	Hs.171929	NR_037951	ENSG00000273294	C1QTNF3-AMACR	-	C1QTNF3-AMACR readthrough (NMD candidate)	ncRNA	3.939	5.105	8.971	1.651	1.231	0.688	0.510	1.655	0.913	1.588	1.167	1.385	2.061	0.495	0.508	2.157	1.884	1.794	1.881	2.139	2.585	2.273	0.922	1.751	1.796	3.501	4.909	2.603	3.177	2.963	2.133	1.762	2.404	1.324	1.739	0.859	1.966	4.316	3.041	0.279	0.604	0.626	0.999	0.510	1.385	0.563	0.741	0.352	0.438
5836	chr4	10519871	10532594	+	0	NA	intron (NM_052964, intron 14 of 18)	intron (NM_052964, intron 14 of 18)	-67200	NM_053042	85460	Hs.455089	NM_053042	ENSG00000178163	ZNF518B	-	zinc finger protein 518B	protein-coding	nan	nan	nan	0.278	0.313	0.139	0.578	0.035	0.063	0.883	0.233	1.092	0.207	0.008	0.059	0.314	0.173	0.224	0.953	0.504	0.624	2.991	2.984	0.204	0.178	0.106	0.174	0.288	0.409	0.476	0.341	0.133	0.137	1.148	0.997	0.170	0.541	4.338	1.972	0.039	0.295	0.075	0.237	0.578	1.092	0.030		0.031	0.058
154	chr1	26855690	26871010	+	0	NA	intron (NM_002953, intron 1 of 21)	intron (NM_002953, intron 1 of 21)	-6253	NM_001330441	6195	Hs.149957	NM_002953	ENSG00000117676	RPS6KA1	HU-1|MAPKAPK1A|RSK|RSK1|p90Rsk	ribosomal protein S6 kinase A1	protein-coding	1.686	1.694	nan	1.715	1.051	0.511	0.681	0.239	0.052	0.450	0.199	0.600	2.530	0.779	0.110	1.228	2.009	0.881	1.740	1.893	1.916	0.947	0.390	2.297	2.228	1.354	1.999	2.111	3.349	0.715	0.603	0.815	1.201	0.334	0.395	0.967	1.847	1.319	0.699	0.812	0.643	0.050	0.196	0.681	0.600	0.284	0.434	0.283	0.409
1463	chr11	64629648	64647482	+	0	NA	intron (NM_006795, intron 2 of 4)	intron (NM_006795, intron 2 of 4)	7675	NM_006795	10938	Hs.523774	NM_006795	ENSG00000110047	EHD1	H-PAST|HPAST1|PAST|PAST1	EH domain containing 1	protein-coding	nan	0.947	1.546	0.843	0.886	0.350	0.897	0.748	0.154	0.404	0.204	0.676	2.074	0.863	0.110	4.003	5.504	1.324	1.889	2.324	2.419	1.586	0.717	1.576	1.608	2.034	2.835	1.544	2.362	1.882	1.912	2.948	4.409	0.603	0.650	0.946	1.259	0.958	0.616	0.839	1.024	0.136	0.236	0.897	0.676	0.783	0.522	3.265	0.221
6796	chr6	48075358	48087896	+	0	NA	Intergenic	Intergenic	-45202	NM_207499	442213	Hs.659409	NM_207499	ENSG00000244694	PTCHD4	C6orf138|PTCH53|dJ402H5.2	patched domain containing 4	protein-coding	0.896	1.668	1.221	0.273	0.337	0.255	0.577	0.196	0.051	0.324	0.206	0.057	0.823		0.132	0.527	0.308	0.598	0.346	0.244	0.325	9.845	12.024	0.324	0.338	0.370	0.617	3.340	nan	0.257	0.100	0.498	0.688	3.250	4.203	0.405	0.808	1.080	0.832	0.013	0.057	0.395	0.064	0.577	0.057		2.204	0.333	0.206
5320	chr3	7003975	7011860	+	0	NA	intron (NM_000844, intron 1 of 9)	intron (NM_000844, intron 1 of 9)	-72213	NR_131906	105376946	Hs.616038	NR_131906	ENSG00000237665	GRM7-AS2	-	GRM7 antisense RNA 2	ncRNA	0.433	0.619	0.565	0.079	0.161	0.103	0.016	0.086	0.122	0.112	0.129	0.091	0.271	0.014	0.091	0.157	0.095	2.342	11.191	0.327	0.345	0.100	0.101	0.182	0.238	0.050	0.163	0.345	0.278	0.282	0.113	0.201	0.159	0.043	0.046	0.179	0.266	0.429	0.301	0.021			0.030	0.016	0.091		0.073	0.076	0.016
5699	chr3	177540007	177556318	+	0	NA	intron (NR_110826, intron 1 of 2)	L2c|LINE|L2	13509	NR_110826	102724550	Hs.570526	NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA	1.771	2.036	1.301	1.142	4.990	2.559	0.959	1.613	0.198	1.185	0.568	1.337	2.494	0.060	0.098	0.823	1.152	0.973	1.418	1.416	1.430	11.370	6.532	0.275	0.303	1.283	1.768	1.538	1.632	0.864	0.448	0.204	0.397	2.096	1.770	1.766	5.437	2.543	1.573	0.191	0.443	0.374	0.522	0.959	1.337	0.041	0.476	0.091	1.279
2801	chr14	105930839	105954748	+	0	NA	promoter-TSS (NR_073085)	promoter-TSS (NR_073085)	597	NR_073084	1397	Hs.534309	NM_001312	ENSG00000182809	CRIP2	CRIP|CRP2|ESP1	cysteine rich protein 2	protein-coding	5.261	2.997	4.115	2.413	2.147	1.202	3.440	0.574	0.181	1.945	0.849	5.477	8.147	2.577	0.109	2.148	4.648	1.005	1.945	5.754	5.629	3.941	3.414	0.594	0.519	2.393	3.730	3.059	6.714	1.473	1.496	0.973	1.787	3.730	1.936	0.562	0.399	0.641	0.370	10.244	1.471	1.030	0.792	3.440	5.477	0.825	1.561	0.672	0.062
6730	chr6	34553025	34572432	+	0	NA	intron (NM_024294, intron 4 of 4)	AluJr|SINE|Alu	-38618	NM_001252294	25803	Hs.485158	NM_012391	ENSG00000124664	SPDEF	PDEF|bA375E1.3	SAM pointed domain containing ETS transcription factor	protein-coding	nan	1.563	nan	1.969	0.439	0.271	0.488	0.292	0.108	0.774	0.383	1.279	2.874	0.107	0.117	0.544	0.625	0.396	nan	nan	1.447	2.382	0.512	0.515	0.565	1.917	2.647	3.717	3.954	1.440	0.990	0.257	0.447	4.138	4.381	0.683	1.344	2.391	1.384	0.083	0.696	1.647	0.462	0.488	1.279	0.819	0.588	0.057	0.326
681	chr1	178416749	178442470	+	0	NA	intron (NM_004841, intron 12 of 15)	intron (NM_004841, intron 12 of 15)	-52603	NM_001170722	84066	Hs.534501	NM_032126	ENSG00000240021	TEX35	C1orf49|TSC24	testis expressed 35	protein-coding	nan	nan	nan	0.083	0.286	0.155	0.275	0.363	0.145	0.153	0.208	0.037	0.319	0.064	0.116	0.536	0.410	5.818	11.023	nan	0.491	0.640	0.215	0.287	0.329	0.511	0.697	0.464	0.526	0.372	0.200	0.381	0.556	0.105	0.137	0.453	nan	0.511	0.584	0.316	0.364	0.015	0.074	0.275	0.037	0.011	0.032	0.173	0.281
8222	chr9	100740387	100749583	+	0	NA	promoter-TSS (NM_006401)	promoter-TSS (NM_006401)	-504	NM_006401	10541	Hs.730654	NM_006401	ENSG00000136938	ANP32B	APRIL|PHAPI2|SSP29	acidic nuclear phosphoprotein 32 family member B	protein-coding	6.223	3.545	9.652	8.890	6.148	3.490	7.980	2.425	0.394	3.143	1.226	7.440	8.773	3.756	0.121	6.302	6.695	9.144	12.939	8.925	8.759	4.503	2.233	9.773	9.690	3.759	4.694	9.440	nan	6.684	7.835	4.799	7.977	8.858	8.352	4.861	4.387	nan	1.637	3.047	3.845	2.749	4.184	7.980	7.440	2.625	3.150	1.755	1.334
8373	chrX	20460295	20519050	+	0	NA	Intergenic	Intergenic	-204922	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding	0.620	0.863	0.545	0.290	0.358	0.212	0.154	0.088	0.066	0.201	0.162	0.416	3.234	0.029	0.051	0.127	0.102	0.177	0.240	0.638	0.826	0.900	0.289	0.168	0.168	0.576	0.743	0.989	0.737	0.396	0.203	0.105	0.165	0.102	0.156	0.329	0.889	0.766	0.568	0.360	0.296	0.023	0.076	0.154	0.416	0.025	0.171	0.025	0.232
1029	chr10	13194716	13212333	+	0	NA	promoter-TSS (NM_018518)	promoter-TSS (NM_018518)	-30	NM_018518	55388	Hs.198363	NM_018518	ENSG00000065328	MCM10	CNA43|DNA43|PRO2249	minichromosome maintenance 10 replication initiation factor	protein-coding	nan	0.776	0.795	0.427	0.579	0.237	0.348	0.385	0.137	0.233	0.202	0.367	0.794	0.259	0.097	1.197	0.768	0.873	1.276	0.751	0.679	5.089	1.897	0.816	0.770	0.830	1.274	0.850	1.400	0.545	0.549	0.380	0.510	0.791	1.056	0.820	0.802	1.366	0.695	0.111	0.550	0.131	0.202	0.348	0.367	0.132	0.178	0.079	0.105
3062	chr16	15067195	15077832	+	0	NA	intron (NM_001324020, intron 1 of 16)	AluJb|SINE|Alu	3693	NM_001285450	23042	Hs.370781	NM_015027	ENSG00000179889	PDXDC1	LP8165	pyridoxal dependent decarboxylase domain containing 1	protein-coding	2.209	2.807	nan	4.235	5.938	3.131	1.959	1.746	0.306	2.832	1.486	3.554	5.991	1.191	0.148	3.295	3.573	2.397	3.128	4.038	4.774	6.955	3.021	7.867	8.231	1.824	2.247	3.593	5.276	nan	3.281	5.081	7.639	3.886	3.765	2.225	2.816	2.335	1.189	1.825	2.348	1.096	1.492	1.959	3.554	1.051	1.289	5.156	0.719
5	chr1	933631	938358	+	0	NA	promoter-TSS (NM_021170)	promoter-TSS (NM_021170)	-442	NM_021170	57801	Hs.154029	NM_021170	ENSG00000188290	HES4	bHLHb42	hes family bHLH transcription factor 4	protein-coding	8.138	nan	11.693	3.582	2.516	1.529	2.751	5.584	0.729	0.711	0.104	0.197	8.566	11.414	0.185	5.246	7.143	9.759	16.993	1.883	1.049	3.137	2.028	7.221	7.353	6.115	nan	nan	15.409	nan	1.592	2.869	2.837	3.217	2.550	0.565	1.285	0.353	0.310	7.435	1.127	0.507	30.773	2.751	0.197	2.317	0.278	0.707	0.441
2715	chr14	81847585	81870294	+	0	NA	intron (NM_033104, intron 3 of 5)	MER96B|DNA|hAT	34617	NM_033104	85439	Hs.14248	NM_033104	ENSG00000140022	STON2	STN2|STNB|STNB2	stonin 2	protein-coding	nan	1.185	0.958	0.347	0.418	0.156	0.795	3.353	0.467	0.106	0.128	0.221	0.942	0.052	0.097	0.369	0.227	1.364	6.489	0.627	0.740	0.534	0.159	0.377	0.416	1.243	1.606	0.527	0.561	0.919	0.657	0.133	0.297	0.335	0.626	0.238	0.723	0.996	0.933	0.482	0.311	0.067	0.163	0.795	0.221	0.694	0.071	0.056	0.169
2105	chr12	103419093	103426965	+	0	NA	Intergenic	MIRc|SINE|MIR	71577	NM_004316	429	Hs.703025	NM_004316	ENSG00000139352	ASCL1	ASH1|HASH1|MASH1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding	0.903	1.618	nan	1.503	1.060	0.601	1.187	0.096	0.045	0.427	0.397	1.401	6.640	0.070	0.113	0.273	0.089	0.140	0.225	1.889	1.845	1.143	0.391	0.136	0.201	0.180	0.375	1.850	1.926	0.594	0.354	0.046	0.138	0.568	0.307	0.292	0.629	2.846	1.784	6.742	7.609	0.121	0.031	1.187	1.401	0.112	0.467	0.012	0.109
3292	chr17	16282619	16291645	+	0	NA	Intergenic	AluSz|SINE|Alu	2353	NM_001281717	7314	Hs.356190	NM_018955	ENSG00000170315	UBB	HEL-S-50	ubiquitin B	protein-coding	2.405	1.631	1.808	1.434	3.575	1.976	1.888	0.926	0.321	0.923	0.526	2.895	5.913	1.601	0.090	3.495	3.331	3.285	nan	3.879	3.958	3.506	1.923	5.229	5.432	1.914	2.372	4.037	5.895	nan	6.732	2.667	4.541	1.989	2.511	0.846	1.179	1.359	0.947	0.905	1.277	0.344	1.256	1.888	2.895	0.530	5.755	0.867	0.352
3455	chr17	48961340	49034776	+	0	NA	Intergenic	MIRb|SINE|MIR	-52719	NM_001243877	10140	Hs.703321	NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding	2.381	2.373	nan	1.111	2.247	1.114	1.691	0.276	0.128	1.298	0.756	2.004	3.506	0.158	0.103	2.169	3.074	0.812	1.519	2.192	nan	2.237	0.923	2.484	2.656	1.592	2.052	4.116	nan	2.133	1.595	3.196	4.600	2.222	2.289	1.107	2.468	1.498	0.976	2.013	0.996	0.674	0.902	1.691	2.004	0.494	1.936	4.047	0.900
554	chr1	153957413	153964321	+	0	NA	Intergenic	AluY|SINE|Alu	-2014	NM_002870	5872	Hs.151536	NM_002870	ENSG00000143545	RAB13	GIG4	RAB13, member RAS oncogene family	protein-coding	nan	nan	2.640	2.634	2.220	1.209	2.785	2.167	0.435	1.943	1.259	2.973	8.964	2.924	0.180	2.921	3.121	5.149	7.321	5.211	nan	6.171	2.585	5.725	5.949	4.791	6.189	5.655	6.374	4.077	3.495	4.328	6.526	3.677	3.913	3.174	4.708	2.644	1.332	1.804	2.561	0.681	1.076	2.785	2.973	0.795	4.639	2.609	1.511
1957	chr12	54467431	54482608	+	0	NA	intron (NR_026658, intron 1 of 2)	intron (NR_026658, intron 1 of 2)	588	NR_026658	100240735	Hs.635297	NR_026658	ENSG00000250654	LOC100240735	-	uncharacterized LOC100240735	ncRNA	nan	0.811	0.707	0.046	0.335	0.138	0.202	0.085	0.138	0.074	0.158	0.095	0.303	0.120	0.062	nan	9.994	2.911	3.246	0.266	nan	0.170	0.130	1.771	1.704	0.379	nan	0.492	nan	0.367	0.160	5.716	9.477	0.785	0.445	1.104	3.199	0.287	0.419	0.241	0.774	0.399	0.031	0.202	0.095	0.136	0.027	6.956	0.654
5894	chr4	49653369	49656060	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	666055	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding	19.447	23.119	20.400	5.111	8.403	4.715	6.530	2.500	15.691	2.879	8.378	2.055	9.121	1.811	8.609	12.009	4.348	4.832	5.916	10.025	14.847	4.362	3.439	7.125	6.516	10.833	14.485	6.176	6.760	14.790	3.533	3.690	6.259	3.807	7.465	5.451	8.313	4.733	7.471	0.872	5.805	2.329	1.199	6.530	2.055	1.046	1.504	1.806	2.023
552	chr1	153852218	153855840	+	0	NA	intron (NM_020699, intron 1 of 10)	intron (NM_020699, intron 1 of 10)	41422	NM_020699	57459	Hs.4779	NM_020699	ENSG00000143614	GATAD2B	MRD18|P66beta|p68	GATA zinc finger domain containing 2B	protein-coding	nan	nan	2.392	2.845	5.720	3.542	4.789	1.426	0.358	2.388	1.434	3.971	20.195	0.120	0.189	6.706	5.624	6.352	7.447	16.240	nan	9.118	2.372	0.808	0.811	4.989	5.382	6.710	8.954	6.140	6.505	3.397	5.633	4.433	7.111	2.845	3.544	3.506	2.069	5.192	5.831	0.373	1.647	4.789	3.971	1.204	3.534	3.441	0.375
4006	chr19	28926342	28937574	+	0	NA	intron (NR_110759, intron 7 of 9)	L1MA3|LINE|L1	-165637	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA	nan	1.151	0.475	0.102	0.558	0.117	0.104	0.079	0.028	0.042	0.079	0.036	7.453	0.087	0.111	0.179	0.144	0.120	0.220	0.158	0.241	0.121	0.065	0.108	0.069	0.169	0.260	0.113	0.135	0.262	0.096	0.155	0.201	0.075	0.068	0.062	0.213	1.862	1.127	0.321	0.095	0.034	0.007	0.104	0.036	0.053	0.091	0.035	0.134
3766	chr18	42373212	42386249	+	0	NA	intron (NM_001130110, intron 2 of 3)	LTR33|LTR|ERVL	118867	NM_015559	26040	Hs.435458	NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding	nan	0.970	1.470	0.223	0.385	0.268	0.893	0.226	0.062	0.439	0.222	0.309	0.453	0.025	0.099	0.610	0.662	0.278	0.565	0.770	0.868	3.105	1.599	0.072	0.064	0.673	0.923	0.528	0.558	1.107	0.757	0.183	0.292	3.302	4.192	0.471	nan	2.031	1.633	0.159	0.164	1.052	0.369	0.893	0.309	0.200	0.408	0.196	0.350
74	chr1	10268660	10272978	+	0	NA	promoter-TSS (NM_183416)	promoter-TSS (NM_183416)	55	NM_015074	23095	Hs.97858	NM_015074	ENSG00000054523	KIF1B	CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1	kinesin family member 1B	protein-coding	7.716	3.736	nan	10.406	2.956	2.152	4.387	3.973	0.707	1.784	1.030	2.744	8.327	4.643	0.240	5.167	6.152	6.568	9.424	11.794	9.810	2.925	1.008	12.779	nan	5.783	nan	11.871	22.276	nan	8.171	2.206	5.164	2.047	1.659	9.299	8.242	2.991	1.879	3.554	3.857	0.264	1.013	4.387	2.744	1.497	2.986	1.171	3.847
5676	chr3	173808101	173822039	+	0	NA	intron (NM_014932, intron 4 of 6)	intron (NM_014932, intron 4 of 6)	-176484	NR_046664	100874010	Hs.624265	NR_046664	ENSG00000228213	NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA	1.065	1.261	0.759	0.151	1.448	0.990	0.169	0.243	0.046	1.024	0.759	0.679	0.166	0.033	0.077	0.289	0.277	0.291	0.385	0.359	0.459	4.383	1.142	0.293	0.320	2.046	2.178	0.459	0.426	0.656	0.222	0.137	0.245	5.158	8.139	0.421	0.730	0.399	0.356	0.080	0.079	0.970	0.057	0.169	0.679	0.035	0.014	0.057	0.237
299	chr1	51423949	51452470	+	0	NA	intron (NM_078626, intron 1 of 1)	intron (NM_078626, intron 1 of 1)	2567	NM_078626	1031	Hs.525324	NM_001262	ENSG00000123080	CDKN2C	INK4C|p18|p18-INK4C	cyclin dependent kinase inhibitor 2C	protein-coding	5.805	5.913	2.823	3.776	4.932	2.534	5.091	4.496	0.384	5.442	3.034	4.112	14.234	3.053	0.151	2.895	2.879	3.034	3.986	17.178	17.051	6.527	3.180	4.012	3.962	8.031	9.377	3.005	4.019	11.455	13.230	1.314	2.375	7.055	5.964	2.362	nan	5.145	3.000	7.417	5.833	1.570	4.880	5.091	4.112	1.099	2.142	0.833	1.118
2024	chr12	72332704	72346614	+	0	NA	intron (NM_173353, intron 4 of 10)	intron (NM_173353, intron 4 of 10)	7033	NM_173353	121278	Hs.736576	NM_173353	ENSG00000139287	TPH2	ADHD7|NTPH	tryptophan hydroxylase 2	protein-coding	nan	1.365	1.136	0.730	1.083	0.440	0.792	0.129	0.105	0.397	0.285	0.639	2.145	0.016	0.056	0.258	0.195	0.299	0.325	1.564	1.329	4.940	1.766	0.432	0.464	2.452	3.669	nan	2.635	3.152	2.220	0.168	0.199	1.163	1.326	0.774	1.815	nan	0.966	0.434	0.293	0.335	0.912	0.792	0.639	0.756	1.531	0.064	0.335
5952	chr4	81174476	81190151	+	0	NA	Intergenic	AluJo|SINE|Alu	-5429	NM_033143	2250	Hs.37055	NM_004464	ENSG00000138675	FGF5	HBGF-5|Smag-82|TCMGLY	fibroblast growth factor 5	protein-coding	1.039	0.557	0.734	0.141	3.914	2.048	0.547	1.060	0.113	1.501	0.711	0.618	0.442	0.104	0.071	0.237	0.120	0.401	0.810	0.834	0.910	3.717	2.101	0.409	0.347	0.439	nan	0.270	0.301	0.567	0.576	0.060	0.110	2.125	1.939	0.391	nan	2.515	1.434	0.036	0.125	0.340	0.914	0.547	0.618	0.068	0.195	0.025	0.134
7643	chr8	37088755	37101893	+	0	NA	intron (NR_031672, intron 2 of 2).2	intron (NR_031672, intron 2 of 2).2	115853	NR_031672	100302233		NR_031672	ENSG00000221641	MIR1268A	MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a	microRNA 1268a	ncRNA	0.569	0.942	nan	3.815	0.595	0.209	0.686	0.068	0.135	0.028	0.092	2.230	2.395	0.016	0.120	0.264	0.208	0.350	0.472	1.829	1.633	0.187	0.077	0.109	0.114	0.292	0.433	0.897	1.543	0.528	0.322	0.042	0.170	0.204	0.208	0.373	0.881	3.961	1.540	0.025	0.252	0.036	0.054	0.686	2.230	0.031	1.719	0.048	0.085
6580	chr6	1756342	1769121	+	0	NA	intron (NM_001500, intron 7 of 10)	intron (NM_001500, intron 7 of 10)	152050	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding	1.186	1.387	1.255	1.356	1.989	1.155	0.376	0.759	0.101	0.586	0.342	0.439	0.328	0.051	0.095	0.819	0.767	4.090	8.647	0.500	0.563	1.333	0.283	0.527	0.593	0.459	0.778	2.424	2.104	0.341	0.275	0.485	0.671	0.313	0.477	0.477	1.389	1.408	0.849	0.247	0.702		0.291	0.376	0.439	0.038	0.412	0.164	0.272
1350	chr11	24357262	24374318	+	0	NA	Intergenic	MER61A|LTR|ERV1	-152726	NM_001009909	338645	Hs.144138	NM_001009909	ENSG00000187398	LUZP2	KFSP2566|PRO6246	leucine zipper protein 2	protein-coding	0.467	0.764	0.488	0.103	0.141	0.085	0.037	0.057	0.094	0.144	0.121	0.056	0.319	0.006	0.115	0.493	0.368	0.327	0.227	0.232	0.344	0.083	0.070	0.181	0.209	3.585	4.376	0.158	0.209	0.182	0.048	0.173	0.210	0.198	0.178	0.083	0.152	0.427	0.341	0.053	0.115	0.034	0.004	0.037	0.056	0.131	0.012	0.041	0.052
7333	chr7	75984842	75995788	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1973	NM_012479	7532	Hs.744840	NM_012479	ENSG00000170027	YWHAG	14-3-3GAMMA|PPP1R170	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma	protein-coding	nan	2.315	3.363	2.689	3.910	2.067	3.039	2.154	0.648	2.537	1.030	3.053	5.154	3.769	0.183	4.345	4.639	3.326	nan	5.887	4.340	7.221	2.581	4.139	4.275	1.212	nan	4.107	nan	3.677	4.569	2.070	4.266	4.948	5.173	4.247	5.433	4.775	2.853	3.637	4.074	0.951	1.446	3.039	3.053	1.132	1.676	1.048	1.116
7739	chr8	71084149	71108025	+	0	NA	intron (NM_001321703, intron 4 of 22)	L2c|LINE|L2	-112525	NM_024504	63978	Hs.736037	NM_024504	ENSG00000147596	PRDM14	PFM11	PR/SET domain 14	protein-coding	1.771	0.936	0.992	0.742	0.402	0.216	0.464	0.526	0.088	0.781	0.454	0.418	0.443	0.073	0.096	0.344	0.596	0.286	0.514	1.004	1.146	1.864	0.582	0.440	0.411	1.816	2.171	0.699	1.518	0.411	0.185	0.239	0.328	2.241	3.074	0.618	1.138	3.983	2.165	0.155	0.428	0.589	0.278	0.464	0.418	0.053	1.052	0.116	0.203
1240	chr10	123990572	124006293	+	0	NA	intron (NM_206862, intron 18 of 22)	intron (NM_206862, intron 18 of 22)	-32379	NM_001318189	118663	Hs.422466	NM_144587	ENSG00000138152	BTBD16	C10orf87	BTB domain containing 16	protein-coding	nan	2.560	0.914	0.665	3.560	1.911	0.322	0.251	0.133	1.658	0.803	6.143	0.504	0.041	0.075	0.369	0.545	0.335	0.432	4.258	4.553	4.546	1.185	0.272	0.224	0.523	0.734	1.153	1.186	0.491	0.379	0.373	0.485	0.136	0.190	0.230	0.437	2.324	1.285	0.690	2.764	0.012	0.822	0.322	6.143	0.018	0.942	0.377	0.126
2815	chr15	20561619	20566313	+	0	NA	Intergenic	Intergenic	75969	NR_038836	646096	Hs.448789	NR_038836	ENSG00000259156	CHEK2P2	-	checkpoint kinase 2 pseudogene 2	pseudo	nan	1.432	nan	0.166	0.779	0.309	0.361	0.175	0.136	0.047	0.172	0.126	0.893	0.184	0.079	0.958	0.926	0.946	1.566	0.419	0.752	0.619	0.238	1.409	1.625	0.784	1.305	0.477	0.437	12.226	14.352	0.554	0.969	0.172	0.174	4.064	6.065	1.044	0.774	0.071	0.094	0.062	0.034	0.361	0.126	2.794	0.236	0.126	2.527
8276	chr9	128816623	128823334	+	0	NA	Intergenic	Intergenic	218216	NR_121584	101929116	Hs.382124	NR_121584	ENSG00000228392	LOC101929116	-	uncharacterized LOC101929116	ncRNA	nan	nan	1.279	0.840	2.007	0.732	0.586	0.145	0.049	2.603	1.547	2.375	nan	0.081	0.075	0.330	0.184	1.230	0.670	0.775	1.212	0.860	0.270	0.223	0.235	1.336	nan	0.421	0.492	12.318	13.577	0.271	0.179	1.599	1.453	1.993	3.817	nan	1.687	0.283	0.198	0.475	1.451	0.586	2.375	2.125	3.057	0.058	1.328
3355	chr17	30619352	30646337	+	0	NA	intron (NM_001330181, intron 6 of 7)	AluY|SINE|Alu	36384	NM_022344	64149	Hs.655257	NM_022344	ENSG00000108666	C17orf75	NJMU-R1|SRI2	chromosome 17 open reading frame 75	protein-coding	nan	1.164	1.045	0.229	0.503	0.244	0.409	0.106	0.119	0.301	0.185	0.369	0.787	0.144	0.156	0.521	0.484	0.243	0.412	nan	0.839	0.798	0.314	0.500	0.599	0.622	1.053	1.008	1.226	nan	2.817	0.313	0.434	0.505	0.580	2.331	6.723	1.233	0.686	0.243	0.159	0.135	0.288	0.409	0.369	0.195	0.067	0.183	2.645
1976	chr12	58144491	58150990	+	0	NA	Intergenic	Intergenic	-1141	NM_138396	92979	Hs.632709	NM_138396	ENSG00000139266	MARCH9	MARCH-IX|RNF179	membrane associated ring-CH-type finger 9	protein-coding	nan	2.775	2.417	4.162	4.713	2.418	4.244	2.069	0.197	2.723	1.129	5.244	7.372	1.238	0.069	nan	4.241	3.118	4.515	6.304	nan	6.404	2.896	5.259	5.880	3.602	nan	10.613	14.488	4.938	5.173	2.258	4.065	4.373	5.119	4.948	6.877	4.650	2.230	1.201	5.792	1.025	1.321	4.244	5.244	1.415	2.582	1.541	1.545
7568	chr7	158371968	158381589	+	0	NA	intron (NM_130843, intron 1 of 21)	intron (NM_130843, intron 1 of 21)	3716	NM_130842	5799	Hs.490789	NM_002847	ENSG00000155093	PTPRN2	IA-2beta|IAR|ICAAR|PTPRP|R-PTP-N2	protein tyrosine phosphatase, receptor type N2	protein-coding	1.414	1.296	nan	4.830	4.419	2.246	0.814	0.050	0.050	2.730	0.923	5.937	6.250	0.137	0.095	0.836	1.166	0.099	0.129	2.510	2.338	6.878	2.546	0.053	0.052	0.491	0.665	6.967	6.364	0.687	0.589	0.756	0.987	1.472	1.505	0.194	0.281	4.290	2.172	0.257	5.285	0.147	0.107	0.814	5.937	0.291	1.299	0.195	0.038
817	chr1	205460739	205479532	+	0	NA	Intergenic	Intergenic	-3549	NM_212503	5129	Hs.445402	NM_002596	ENSG00000117266	CDK18	PCTAIRE|PCTAIRE3|PCTK3	cyclin dependent kinase 18	protein-coding	1.678	1.666	2.235	0.920	2.442	1.084	1.536	1.926	0.523	0.702	0.690	0.954	3.379	0.231	0.124	0.878	1.976	0.770	1.448	1.959	1.894	4.292	0.861	nan	nan	0.883	1.319	2.524	2.347	1.238	1.020	0.464	0.679	1.971	1.738	1.077	2.440	2.382	1.105	0.436	1.324	0.827	0.800	1.536	0.954	0.436	0.784	0.253	0.322
2751	chr14	95998390	96004405	+	0	NA	promoter-TSS (NR_001459)	promoter-TSS (NR_001459)	74	NM_016417	51218	Hs.744943	NM_016417	ENSG00000182512	GLRX5	C14orf87|FLB4739|GRX5|PR01238|PRO1238|PRSA|SIDBA3|SPAHGC	glutaredoxin 5	protein-coding	7.200	2.233	nan	6.324	4.225	2.240	4.594	2.593	0.294	2.091	1.314	5.459	7.647	2.538	0.224	4.043	4.373	3.254	4.767	8.590	7.772	5.905	1.682	10.528	11.301	5.253	6.755	4.761	7.672	10.302	13.143	3.925	6.571	5.750	5.216	4.121	4.846	nan	1.871	3.419	3.699	0.984	3.432	4.594	5.459	1.257	1.761	2.770	1.127
3470	chr17	55579823	55704355	+	0	NA	intron (NM_170721, intron 6 of 9)	intron (NM_170721, intron 6 of 9)	-41131	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA	2.112	2.010	1.887	0.394	3.532	1.842	2.880	0.305	0.104	0.391	0.346	1.187	2.882	0.062	0.116	1.556	2.106	1.711	2.179	1.887	1.959	1.746	0.542	nan	0.993	1.583	2.130	nan	nan	2.253	2.189	1.013	2.077	1.314	1.563	2.070	7.014	1.342	0.851	2.025	1.794	0.422	0.845	2.880	1.187	1.066	1.684	1.681	5.016
7518	chr7	141157969	141175741	+	0	NA	intron (NM_001195278, intron 3 of 3)	intron (NM_001195278, intron 3 of 3)	-84223	NM_018238	55750	Hs.743318	NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding	0.902	0.762	0.654	1.427	1.254	0.524	0.546	0.135	0.108	1.235	0.269	0.877	6.418	0.090	0.134	0.492	0.698	0.213	0.341	0.407	0.536	3.640	0.953	0.479	0.418	0.495	0.689	1.032	0.789	0.344	0.195	1.175	1.328	0.337	0.307	0.212	0.451	2.008	nan	1.861	2.494	0.076	0.242	0.546	0.877	0.044	0.085	0.438	0.098
4719	chr2	219259635	219272431	+	0	NA	intron (NM_182642, intron 1 of 6)	intron (NM_182642, intron 1 of 6)	-1336	NR_029500	407017		NR_029500	ENSG00000199121	MIR26B	MIRN26B|hsa-mir-26b|miR-26b	microRNA 26b	ncRNA	nan	2.461	nan	4.532	5.109	2.367	1.716	2.336	0.389	1.153	0.849	3.843	10.167	8.554	0.203	1.493	3.510	2.542	3.536	2.622	2.150	2.651	0.813	3.193	3.274	1.681	2.252	8.791	nan	2.562	2.827	1.129	2.247	0.954	1.008	1.699	2.766	1.533	0.855	4.368	1.713	0.155	0.901	1.716	3.843	0.995	4.232	1.439	1.472
673	chr1	175060782	175066968	+	0	NA	intron (NM_022093, intron 7 of 18)	intron (NM_022093, intron 7 of 18)	26881	NM_022093	63923	Hs.156369	NM_022093	ENSG00000120332	TNN	TN-W	tenascin N	protein-coding	nan	nan	nan	0.071	0.277	0.280	0.278	0.085	0.156	0.252	0.230	0.096	0.283	0.052	0.135	4.707	3.623	10.080	1.987	nan	0.436	0.565	0.217	2.619	2.596	0.212	0.540	0.270	0.305	0.334	0.150	2.607	4.011	0.368	0.245	0.340	nan	0.711	0.790	0.027	0.067	0.030	0.039	0.278	0.096		0.083	2.196	0.178
3322	chr17	20418262	20449984	+	0	NA	Intergenic	Intergenic	-26312	NR_029393	644945	Hs.572477	NR_029393	ENSG00000214822	KRT16P3	KERSMCR	keratin 16 pseudogene 3	pseudo	nan	nan	nan	0.442	6.590	3.416	2.485	0.340	0.136	0.637	0.367	0.438	0.843	0.541	0.075	1.465	2.302	0.374	0.504	1.491	1.253	4.802	1.175	0.614	0.687	1.306	1.771	1.984	2.251	2.706	2.679	0.662	1.045	2.667	2.645	1.357	nan	0.854	0.482	0.540	0.546	1.172	0.342	2.485	0.438	0.642	0.390	0.428	0.632
4204	chr2	7832911	7848647	+	0	NA	Intergenic	L1PA15|LINE|L1	199007	NR_110256	101929551	Hs.116006	NR_110256	ENSG00000226506	LOC101929551	-	uncharacterized LOC101929551	ncRNA	0.690	0.635	0.776	0.174	0.905	0.571	0.235	0.072	0.092	0.859	0.458	4.554	0.642	0.062	0.122	0.997	1.373	0.695	0.667	1.449	1.723	3.970	1.323	0.125	0.182	0.469	0.678	0.419	0.283	0.715	0.316	0.450	0.817	0.263	0.341	0.122	0.188	1.913	0.923	0.051	0.216	0.079	0.105	0.235	4.554	0.116	0.139	0.618	0.023
1947	chr12	52564635	52643716	+	0	NA	promoter-TSS (NR_027358)	promoter-TSS (NR_027358)	464	NM_001242696	283403	Hs.667179	NM_001242696		C12orf80	-	chromosome 12 open reading frame 80	protein-coding	nan	2.468	1.158	0.930	1.109	0.552	2.421	0.805	0.121	1.623	0.700	1.840	4.583	0.054	0.058	nan	0.975	2.018	3.652	2.688	nan	4.575	1.281	0.454	0.483	0.839	nan	3.448	nan	0.789	0.649	0.621	0.721	2.088	1.943	0.527	1.059	2.094	1.206	1.145	0.619	0.537	0.556	2.421	1.840	0.748	1.105	0.229	0.112
2366	chr13	88322499	88331475	+	0	NA	intron (NM_015567, intron 1 of 1)	intron (NM_015567, intron 1 of 1)	2117	NM_015567	26050	Hs.591208	NM_015567	ENSG00000165300	SLITRK5	LRRC11|bA364G4.2	SLIT and NTRK like family member 5	protein-coding	nan	nan	1.872	1.038	0.278	0.127	2.523	0.324	0.107	1.223	0.867	0.813	9.168	1.490	0.115	1.199	1.295	2.512	2.856	2.954	1.616	2.800	1.114	0.934	0.876	1.132	1.175	1.877	2.427	1.792	3.495	0.835	1.443	3.362	1.848	2.615	4.046	0.383	0.142	0.013	0.989	1.044	0.070	2.523	0.813	0.065	2.457	0.462	1.606
1347	chr11	22599995	22609157	+	0	NA	Intergenic	L1M5|LINE|L1	42811	NM_022725	2188	Hs.632151	NM_022725	ENSG00000183161	FANCF	FAF	Fanconi anemia complementation group F	protein-coding	0.713	1.015	0.644	0.114	0.155	0.070	0.154	0.074	0.036	0.034	0.054	0.026	0.321	0.012	0.076	0.416	0.428	0.235	0.410	0.355	0.429	0.151	0.105	0.281	0.203	4.793	4.672	0.208	0.219	0.506	0.254	0.181	0.297	0.248	0.166	0.164	0.226	0.409	0.533	0.055	0.089	0.083	0.040	0.154	0.026	0.063	0.022	0.086	0.013
25	chr1	1706008	1717040	+	0	NA	promoter-TSS (NM_001198994)	promoter-TSS (NM_001198994)	-16	NM_001198994	65220	Hs.654792	NM_023018	ENSG00000008130	NADK	dJ283E3.1	NAD kinase	protein-coding	2.387	nan	3.308	5.610	1.839	0.788	0.915	1.054	0.219	1.203	0.655	0.825	3.334	1.291	0.145	2.285	2.715	2.624	3.697	2.355	2.394	2.397	0.802	6.222	6.026	1.634	nan	13.482	14.403	nan	1.736	1.650	3.324	0.906	0.852	1.939	2.462	1.868	0.878	1.544	2.762	0.225	0.303	0.915	0.825	0.781	1.391	0.681	0.859
1504	chr11	70956681	70964693	+	0	NA	Intergenic	Intergenic	-24845	NM_012309	22941	Hs.268726	NM_012309	ENSG00000162105	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding	nan	1.087	1.483	0.022	1.812	1.249	0.442	0.037	0.081	0.019	0.104	0.357	9.866	0.228	0.025	2.560	5.736	0.412	0.990	2.475	1.400	0.513	0.105	1.133	1.137	0.158	0.206	1.184	1.489	0.472	0.501	0.957	1.373	0.173	0.164	0.196	0.349	0.277	0.267	4.125	0.199	0.023	0.029	0.442	0.357	0.291	0.013	0.431	0.047
3350	chr17	29032687	29040880	+	0	NA	non-coding (NR_024187, exon 1 of 8)	non-coding (NR_024187, exon 1 of 8)	157	NR_144393	440423	Hs.628886	NR_024187		SUZ12P1	SUZ12P	SUZ12 polycomb repressive complex 2 subunit pseudogene 1	pseudo	nan	nan	nan	1.767	4.576	2.853	4.304	1.801	0.409	1.582	0.876	5.705	7.102	3.825	0.130	4.191	5.587	2.407	4.126	6.937	6.409	4.643	1.864	3.544	3.789	2.167	3.115	5.188	7.830	7.239	8.720	4.453	9.261	4.420	3.900	6.061	nan	2.243	1.179	4.315	4.140	1.843	3.656	4.304	5.705	1.244	1.674	3.517	3.534
3971	chr19	13017884	13031491	+	0	NA	intron (NM_001105578, intron 2 of 5)	intron (NM_001105578, intron 2 of 5)	5399	NM_001105578	256126	Hs.655173	NM_001105578	ENSG00000161860	SYCE2	CESC1	synaptonemal complex central element protein 2	protein-coding	3.189	2.585	5.624	5.268	3.141	1.436	0.862	0.271	0.261	1.834	1.130	10.108	3.480	0.247	0.103	0.891	1.979	0.604	0.824	11.023	12.422	8.347	3.152	0.830	0.744	1.700	2.411	8.639	10.014	3.088	2.797	0.410	0.481	2.370	2.160	2.156	6.249	3.863	1.952	8.217	3.477	0.883	1.945	0.862	10.108	0.664	1.063	0.181	1.431
1253	chr10	127912154	127932534	+	0	NA	intron (NM_003474, intron 3 of 22)	intron (NM_003474, intron 3 of 22)	154783	NM_001288975	8038	Hs.594351	NM_003474	ENSG00000148848	ADAM12	ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA	ADAM metallopeptidase domain 12	protein-coding	nan	0.941	0.826	0.138	0.322	0.167	0.224	0.249	0.093	0.100	0.073	0.041	0.645	0.048	0.058	0.147	0.140	0.165	0.169	0.304	0.283	4.673	1.192	0.143	0.143	0.200	0.285	0.762	0.824	0.185	0.111	0.082	0.136	0.279	0.638	0.184	0.277	1.741	0.962	0.167	0.083	0.028	0.162	0.224	0.041	0.247	0.570	0.010	0.061
7850	chr8	103657981	103671281	+	0	NA	intron (NM_005655, intron 1 of 3)	intron (NM_005655, intron 1 of 3)	1561	NR_103760	7071	Hs.435001	NM_005655	ENSG00000155090	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	Kruppel like factor 10	protein-coding	5.256	nan	nan	4.526	4.211	2.377	2.358	2.380	0.190	0.862	0.658	3.472	13.367	2.801	0.113	1.749	2.941	2.571	3.374	9.517	7.395	nan	1.708	5.892	5.466	1.827	nan	8.946	nan	nan	4.278	1.793	3.804	2.958	2.337	2.719	nan	2.030	1.084	3.770	3.424	1.191	2.237	2.358	3.472	0.379	4.217	2.031	1.069
5469	chr3	112958147	112963712	+	0	NA	intron (NM_001301861, intron 2 of 19)	intron (NM_001301861, intron 2 of 19)	29585	NM_001301861	91653	Hs.591318	NM_033254	ENSG00000144857	BOC	CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding	1.797	nan	1.115	0.140	0.612	0.225	1.252	2.655	0.057	0.142	0.149	0.751	0.469	0.020	0.016	0.450	0.519	0.490	1.033	0.568	nan	0.527	0.258	0.317	0.384	2.809	3.212	0.485	0.590	1.598	1.170	0.212	0.212	0.663	0.615	1.995	3.857	0.552	0.610	0.098	0.232	0.288	5.863	1.252	0.751	0.104	0.018	0.054	1.233
5941	chr4	77350498	77392158	+	0	NA	intron (NM_020859, intron 1 of 10)	intron (NM_020859, intron 1 of 10)	15075	NM_020859	57619	Hs.683808	NM_020859	ENSG00000138771	SHROOM3	APXL3|MSTP013|SHRM|ShrmL	shroom family member 3	protein-coding	0.655	0.609	0.488	0.159	0.587	0.273	0.485	0.730	0.139	0.056	0.098	0.508	0.281	4.488	0.176	0.273	0.167	0.292	0.561	0.474	0.480	0.617	0.195	0.409	0.387	0.217	0.392	0.449	0.411	0.312	0.154	0.118	0.164	0.109	0.123	0.158	0.319	0.310	0.309	0.036	0.144	0.020	0.069	0.485	0.508	0.019	0.034	0.035	0.039
6654	chr6	20948062	20963273	+	0	NA	exon (NM_017774, exon 10 of 16)	exon (NM_017774, exon 10 of 16)	420979	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding	1.347	1.515	nan	3.509	4.700	2.263	1.766	0.227	0.123	0.954	0.977	3.046	nan	0.057	0.096	0.578	0.579	0.610	nan	1.762	2.086	nan	1.746	2.147	2.372	1.256	1.369	2.138	2.013	1.049	0.657	0.266	0.391	2.783	4.247	0.724	2.307	0.794	0.632	0.921	0.528	0.815	0.170	1.766	3.046	0.180	0.240	0.078	0.650
3932	chr19	1565670	1580397	+	0	NA	Intergenic	AluJb|SINE|Alu	-4976	NM_001174118	399664	Hs.436495	NM_203304	ENSG00000181588	MEX3D	MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO	mex-3 RNA binding family member D	protein-coding	1.783	1.189	3.038	1.360	0.958	0.582	1.559	0.391	0.144	0.524	0.357	1.791	2.699	0.727	0.064	0.679	0.784	1.615	2.188	2.400	1.971	1.122	0.382	1.561	1.473	0.760	1.380	0.593	nan	1.205	0.959	0.312	0.453	1.513	1.232	1.530	1.102	1.453	0.855	5.063	1.899	0.218	0.156	1.559	1.791	0.602	1.296	0.060	0.291
8024	chr9	4015991	4158650	+	0	NA	intron (NM_001042413, intron 4 of 10)	intron (NM_001042413, intron 4 of 10)	64863	NM_152629	169792	Hs.162125	NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding	0.686	2.237	0.733	0.105	0.294	0.139	0.258	0.469	0.132	0.145	0.147	0.137	0.392	0.103	0.091	0.223	0.155	5.779	9.989	0.342	0.359	0.161	0.084	0.241	0.277	1.107	1.544	0.288	0.300	0.428	0.199	0.175	0.279	0.262	0.329	0.096	nan	0.855	0.891	0.093	0.167	0.040	0.062	0.258	0.137	0.061	0.144	0.062	0.022
1730	chr11	129009215	129018621	+	0	NA	intron (NM_001142685, intron 2 of 21)	intron (NM_001142685, intron 2 of 21)	48175	NM_001142685	9743	Hs.440379	NM_014715	ENSG00000134909	ARHGAP32	GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP	Rho GTPase activating protein 32	protein-coding	0.699	0.884	0.551	0.132	0.381	0.166	0.269	0.152	0.051	0.199	0.117	0.140	0.261	3.517	0.145	0.722	0.719	0.610	1.021	0.318	0.344	0.361	0.148	0.309	0.396	1.214	1.784	0.667	0.659	0.382	0.219	5.395	5.707	0.187	0.404	0.194	nan	0.155	0.170	0.042	0.067	0.051	0.026	0.269	0.140	0.021	0.065	12.355	0.093
46	chr1	6404841	6455166	+	0	NA	intron (NM_007274, intron 1 of 8)	Tigger1|DNA|TcMar-Tigger	-9239	NM_181865	11332	Hs.126137	NM_007274	ENSG00000097021	ACOT7	ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH	acyl-CoA thioesterase 7	protein-coding	1.427	nan	1.350	1.718	0.641	0.348	0.331	0.952	0.310	0.293	0.208	0.371	1.939	1.344	0.141	0.803	1.015	0.528	0.901	1.512	1.393	0.672	0.294	1.356	1.389	0.892	nan	nan	4.593	nan	0.685	0.720	0.998	0.330	0.343	0.938	1.510	0.862	0.590	2.620	1.020	0.068	0.176	0.331	0.371	0.336	0.361	0.456	0.383
3623	chr17	80230041	80259300	+	0	NA	Intergenic	AluSx1|SINE|Alu	6020	NR_135639	101929511	Hs.147682	NR_135639	ENSG00000265692	LINC01970	-	long intergenic non-protein coding RNA 1970	ncRNA	1.937	2.997	1.734	1.510	2.944	1.530	1.747	2.113	0.380	1.064	0.539	3.409	3.513	1.093	0.142	2.968	nan	1.460	2.371	nan	2.402	2.842	1.425	2.650	2.750	1.202	1.595	2.601	3.792	0.917	0.910	1.542	2.197	1.938	1.895	1.769	1.711	1.379	0.923	0.759	3.272	0.378	0.527	1.747	3.409	0.653	3.062	0.562	0.618
1316	chr11	12742111	12751517	+	0	NA	intron (NM_021961, intron 2 of 12)	MIR|SINE|MIR	50845	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding	0.913	nan	1.779	4.157	2.810	1.213	2.146	1.046	0.102	1.744	0.620	6.192	4.557	0.115	0.084	nan	1.006	0.950	3.033	5.064	4.762	6.043	2.522	0.662	0.801	1.801	nan	4.755	5.160	0.365	0.229	0.336	0.619	2.678	3.666	0.348	0.870	2.707	nan	5.666	3.588	0.779	0.839	2.146	6.192	0.259	0.528	0.165	0.126
2630	chr14	60217365	60227075	+	0	NA	intron (NM_021136, intron 1 of 8)	intron (NM_021136, intron 1 of 8)	-108482	NR_049851	100847088		NR_049851	ENSG00000263629	MIR5586	-	microRNA 5586	ncRNA	nan	nan	2.497	0.225	0.235	0.247	0.433	0.178	0.100	0.032	0.066	0.196	0.246	0.045	0.110	0.268	0.199	0.277	0.321	0.369	0.496	0.127	0.031	nan	0.355	0.528	0.773	0.422	nan	1.373	1.002	0.131	0.270	0.122	0.188	5.112	10.510	0.437	0.499	0.040	0.138	0.049	0.089	0.433	0.196	0.618	0.065	0.041	2.618
2373	chr13	93472535	93477099	+	0	NA	intron (NM_004466, intron 7 of 7)	intron (NM_004466, intron 7 of 7)	-100950	NR_046520	100873969	Hs.577863	NR_046520	ENSG00000235984	GPC5-AS1	-	GPC5 antisense RNA 1	ncRNA	1.094	1.180	1.070	1.462	1.831	0.531	0.561	0.165	0.105	2.117	0.756	3.719	1.045	0.047	0.070	0.625	0.553	0.669	0.474	2.423	3.306	11.160	9.908	0.185	0.155	0.345	0.443	13.490	6.822	0.372	0.190	0.226	0.369	2.139	3.459	0.292	1.075	0.969	0.484	0.147	1.101	0.189	0.385	0.561	3.719	0.049	5.079	0.108	0.054
6259	chr5	51426488	51451444	+	0	NA	Intergenic	Intergenic	-644808	NM_015946	53918	Hs.644352	NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota homolog (Drosophila)	protein-coding	nan	nan	0.769	0.733	11.643	6.096	4.196	0.081	0.065	0.798	0.580	0.878	1.083	0.079	0.109	0.162	0.110	0.986	0.414	15.844	17.476	nan	0.365	0.090	0.059	0.822	0.979	0.415	0.377	nan	0.548	0.070	0.101	1.119	1.115	0.305	0.500	3.095	1.358	11.078	1.929	0.186	0.047	4.196	0.878	0.055	0.016	0.016	0.050
4163	chr1_gl000191_random	46049	51260	+	0	NA	intron (NR_034035, intron 1 of 6).2	intron (NR_034035, intron 1 of 6).2	1627	NM_006625	10772	Hs.3530	NM_006625	ENSG00000188529	SRSF10	FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2	serine and arginine rich splicing factor 10	protein-coding	nan	nan	3.910	4.292	4.568	2.126	4.303	1.753	0.063	1.989	0.944	1.860	6.359	2.169	0.049	3.550	2.842	4.676	6.758	10.955	11.901	4.004	3.151	10.531	10.977	4.886	7.006	6.583	12.760	5.952	6.765	4.043	6.146	2.599	2.803	6.859	5.297	2.631	1.207	3.987	3.077	0.716	2.147	4.303	1.860	1.568	1.402	1.671	1.930
6992	chr6	136921393	136947804	+	0	NA	intron (NM_005923, intron 16 of 29)	intron (NM_005923, intron 16 of 29)	-15654	NR_125858	101928461	Hs.666518	NR_125858		LOC101928461	-	uncharacterized LOC101928461	ncRNA	0.888	1.183	1.502	1.608	0.418	0.248	0.611	0.399	0.158	0.368	0.121	0.482	1.708	0.086	0.128	0.448	0.266	0.331	0.588	0.400	0.488	nan	1.423	0.272	0.267	0.362	0.591	1.186	1.664	0.547	0.274	0.159	0.227	0.783	1.760	0.186	nan	0.774	0.421	0.050	0.064	0.243	0.490	0.611	0.482	0.059	0.619	0.037	0.131
5659	chr3	171488121	171529220	+	0	NA	intron (NM_002662, intron 1 of 26)	MLT1J|LTR|ERVL-MaLR	19614	NM_001130081	5337	Hs.382865	NM_002662	ENSG00000075651	PLD1	-	phospholipase D1	protein-coding	1.298	1.203	0.872	0.254	0.547	0.273	0.211	2.658	0.369	0.183	0.255	0.154	0.331	0.275	0.093	2.452	3.057	6.900	7.821	0.466	0.467	1.111	0.415	0.580	0.563	0.623	0.993	0.799	0.876	0.753	0.346	3.377	5.204	0.529	1.060	0.289	0.506	0.726	0.713	0.135	0.101	0.105	0.213	0.211	0.154	0.045	0.222	4.008	0.267
3505	chr17	63891126	63900326	+	0	NA	intron (NM_001199165, intron 20 of 26)	intron (NM_001199165, intron 20 of 26)	-73065	NR_126542	201134	Hs.408676	NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO	centrosomal protein 112	protein-coding	0.843	nan	0.750	0.563	0.840	0.352	1.086	0.180	0.088	4.758	2.620	0.787	2.557	0.084	0.109	0.462	0.245	0.188	0.169	0.467	0.627	11.821	5.024	0.266	0.317	0.152	nan	2.719	3.566	0.497	0.225	0.147	0.167	7.900	8.172	0.127	0.166	1.887	0.933	0.012	0.086	1.207	0.017	1.086	0.787	0.010	0.573	0.043	0.040
6878	chr6	99871489	99878066	+	0	NA	intron (NR_125843, intron 2 of 2)	AluSx1|SINE|Alu	-1556	NR_136326	25957	Hs.520287	NM_015491	ENSG00000132424	PNISR	C6orf111|HSPC306|SFRS18|SRrp130|bA98I9.2	PNN interacting serine and arginine rich protein	protein-coding	nan	3.036	nan	4.743	3.777	1.771	3.419	2.217	0.292	1.156	0.626	3.258	7.282	4.326	0.226	7.362	6.773	5.768	8.350	6.394	5.013	nan	3.809	12.685	13.542	3.101	nan	4.799	8.286	nan	9.284	4.024	5.863	4.929	6.286	5.944	6.085	2.135	1.224	2.854	3.255	0.816	2.261	3.419	3.258	1.130	2.228	2.375	2.341
5813	chr3	197346146	197358847	+	0	NA	intron (NR_003266, intron 1 of 7)	intron (NR_003266, intron 1 of 7)	2256	NR_003266	220729	Hs.478854	NR_003266	ENSG00000214135	LOC220729	-	succinate dehydrogenase complex flavoprotein subunit A pseudogene	pseudo	nan	1.981	2.082	1.301	2.636	1.363	1.228	1.090	0.279	0.973	0.798	1.446	nan	0.796	0.095	0.941	1.264	1.777	2.523	1.677	2.006	2.559	1.022	4.298	4.530	1.586	2.345	2.364	3.222	2.658	2.471	6.534	9.670	0.992	1.119	1.937	2.831	1.059	0.614	1.003	1.574	0.395	0.969	1.228	1.446	0.477	0.404	7.085	0.981
1254	chr10	128394395	128406482	+	0	NA	Intergenic	L1MC4|LINE|L1	-190428	NM_001004298	118611	Hs.587663	NM_001004298	ENSG00000154493	C10orf90	FATS|bA422P15.2	chromosome 10 open reading frame 90	protein-coding	nan	0.600	0.856	0.175	0.464	0.102	0.032	0.049	0.067	0.143	0.075	0.039	0.243	0.041	0.077	0.214	0.124	0.269	0.158	0.153	0.136	6.393	2.353	0.126	0.164	0.098	0.165	0.194	0.312	0.119	0.081	0.079	0.085	0.221	0.154	0.123	0.204	0.698	0.457	0.005	0.037	0.055	0.070	0.032	0.039	0.024	0.034	0.025	0.065
6839	chr6	69342543	69368606	+	0	NA	intron (NM_001704, intron 3 of 31)	AluSq2|SINE|Alu	9942	NM_001704	577	Hs.13261	NM_001704	ENSG00000135298	ADGRB3	BAI3	adhesion G protein-coupled receptor B3	protein-coding	nan	1.341	0.696	1.481	0.809	0.394	0.626	0.109	0.105	0.547	0.368	0.124	2.535	0.084	0.131	0.907	1.003	0.523	0.723	2.844	2.811	0.225	0.114	1.361	1.316	3.494	4.050	1.375	1.467	1.861	1.507	0.181	0.579	1.333	0.793	0.457	0.873	0.616	0.408	1.662	1.631	0.154	0.413	0.626	0.124	0.142	0.353	0.152	0.151
1642	chr11	112262029	112278769	+	0	NA	Intergenic	MIRb|SINE|MIR	-82556	NR_120559	101928823	Hs.126118	NR_120559	ENSG00000254968	LOC101928823	-	uncharacterized LOC101928823	ncRNA	0.529	1.658	0.586	0.825	2.599	1.295	0.504	0.036	0.019	0.535	0.255	4.253	0.610	0.045	0.130	0.852	nan	0.304	0.340	3.987	3.878	7.935	2.907	0.237	0.329	0.211	nan	2.167	2.700	0.409	0.214	0.431	0.672	1.252	0.651	0.172	0.204	3.368	2.008	0.242	0.921	0.091	1.064	0.504	4.253	0.064	0.024	0.106	0.029
3712	chr18	30302951	30323549	+	0	NA	intron (NM_020805, intron 3 of 8)	MLT1I-int|LTR|ERVL-MaLR	39724	NM_020805	57565	Hs.446164	NM_020805	ENSG00000197705	KLHL14	-	kelch like family member 14	protein-coding	nan	1.064	0.929	0.598	1.086	0.481	0.612	0.058	0.023	0.419	0.265	0.890	1.198	0.042	0.068	0.386	0.261	1.346	1.396	1.721	1.859	0.761	0.359	0.135	0.115	0.118	0.153	nan	2.193	0.441	0.269	0.394	0.457	1.698	3.040	0.189	0.376	3.452	2.353	0.352	0.385	0.263	0.071	0.612	0.890	0.014	0.242	0.097	0.054
4622	chr2	178927966	178938789	+	0	NA	intron (NM_001077197, intron 2 of 20)	intron (NM_001077197, intron 2 of 20)	4105	NM_016953	50940	Hs.570273	NM_016953	ENSG00000128655	PDE11A	PPNAD2	phosphodiesterase 11A	protein-coding	0.965	0.931	0.945	2.493	1.782	0.837	0.345	0.178	0.015	0.289	0.132	1.894	1.382	0.090	0.063	0.342	0.362	0.468	0.695	1.216	1.120	0.882	0.240	0.661	0.719	2.262	2.542	11.631	9.331	0.731	0.627	0.276	0.434	0.103	0.098	0.672	1.760	0.833	0.617	0.083	0.099	0.009	0.507	0.345	1.894	0.100	0.160	0.064	0.355
892	chr1	225948422	225968281	+	0	NA	Intergenic	Intergenic	-7164	NM_003133	6726	Hs.511425	NM_003133	ENSG00000143742	SRP9	ALURBP	signal recognition particle 9	protein-coding	4.704	nan	4.209	3.366	4.928	2.747	2.493	3.568	1.033	2.138	1.083	2.813	3.008	1.559	0.152	3.525	3.011	4.331	7.605	4.620	nan	4.259	1.738	6.955	7.321	1.362	2.057	5.425	5.256	3.560	3.735	1.985	3.272	2.743	2.912	3.133	4.621	3.605	1.809	2.267	1.090	0.424	1.836	2.493	2.813	1.061	1.288	2.376	1.116
6363	chr5	91892710	91901172	+	0	NA	Intergenic	Intergenic	1010108	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA	nan	5.466	0.719	0.091	0.328	0.250	3.583	1.173	0.057	0.143	0.175		0.789	0.361	0.157	0.215	0.165	0.187	0.373	0.227	0.384	3.475	1.053	0.160	0.149	0.848	0.933	0.296	0.329	0.289	0.163	0.088	0.167	1.590	1.873	0.049	nan	0.414	0.417	0.506	0.105	0.372	0.028	3.583		0.069	0.419	0.047	0.029
7630	chr8	29194263	29217399	+	0	NA	5' UTR (NM_057158, exon 1 of 5)	5' UTR (NM_057158, exon 1 of 5)	491	NM_057158	1846	Hs.417962	NM_001394	ENSG00000120875	DUSP4	HVH2|MKP-2|MKP2|TYP	dual specificity phosphatase 4	protein-coding	nan	2.516	nan	1.443	3.242	1.966	0.996	0.213	0.083	0.224	0.112	2.095	6.140	0.085	0.107	1.133	1.253	2.127	3.597	nan	3.226	nan	1.992	0.387	0.401	0.170	0.310	3.341	3.830	2.869	2.505	0.285	0.357	2.017	1.899	0.487	1.068	nan	nan	1.864	0.123	0.218	0.114	0.996	2.095	0.310	2.965	0.056	0.251
546	chr1	153448893	153468852	+	0	NA	Intergenic	Intergenic	-25735	NM_002963	6278	Hs.112408	NM_002963	ENSG00000143556	S100A7	PSOR1|S100A7c	S100 calcium binding protein A7	protein-coding	nan	nan	1.710	0.153	5.337	2.955	1.014	0.261	0.209	2.870	1.783	1.888	7.010	0.075	0.126	0.324	0.223	0.239	0.463	2.700	nan	4.043	1.312	0.175	0.182	0.894	1.222	0.600	0.876	0.788	0.514	0.359	0.471	5.981	4.976	0.820	2.771	3.119	1.495	0.195	1.825	2.033	0.036	1.014	1.888	0.131	0.213	0.034	0.239
537	chr1	151039821	151045967	+	0	NA	promoter-TSS (NM_001323913)	promoter-TSS (NM_001323913)	-160	NM_001323908	126626	Hs.15671	NM_144618	ENSG00000143458	GABPB2	GABPB-2	GA binding protein transcription factor beta subunit 2	protein-coding	nan	6.675	4.182	1.560	5.187	3.000	4.900	2.567	0.917	3.237	1.845	4.073	16.594	4.084	0.188	5.772	5.842	6.559	9.216	9.038	nan	7.968	4.261	5.583	5.908	4.886	5.399	1.910	2.226	6.232	5.760	7.765	9.346	6.897	7.160	4.943	6.961	2.882	1.330	2.908	7.662	2.025	2.852	4.900	4.073	1.329	0.153	3.996	2.558
7794	chr8	94748663	94754777	+	0	NA	promoter-TSS (NR_027259)	promoter-TSS (NR_027259)	-619	NR_027259	55472	Hs.192788	NM_018608	ENSG00000279331	RBM12B-AS1	C8orf39|PRO1905	RBM12B antisense RNA 1	ncRNA	nan	2.691	4.119	5.462	5.324	3.019	2.676	2.578	0.370	1.338	0.608	4.191	11.715	3.264	0.145	4.287	4.091	4.696	nan	6.309	5.508	6.578	3.484	9.470	10.098	3.432	4.418	14.875	17.473	3.561	4.107	4.254	5.991	5.283	6.024	5.502	5.011	1.536	1.179	3.590	3.620	0.960	1.920	2.676	4.191	0.331	3.118	2.396	1.493
6636	chr6	17862981	17890976	+	0	NA	intron (NM_022113, intron 3 of 38)	AluJb|SINE|Alu	110876	NM_001105568	63971	Hs.94499	NM_022113	ENSG00000137177	KIF13A	RBKIN|bA500C11.2	kinesin family member 13A	protein-coding	1.379	nan	1.941	0.098	0.244	0.166	0.279	0.338	0.126	0.106	0.128	0.240	0.366	0.111	0.108	0.350	0.307	0.522	1.304	0.330	0.383	0.140	0.075	0.298	0.288	3.044	3.601	0.229	0.282	1.241	0.895	0.209	0.278	0.059	0.114	1.268	3.415	0.380	0.412	0.012	0.089	0.030	0.117	0.279	0.240	0.244	0.022	0.053	1.559
4072	chr19	41767670	41773593	+	0	NA	promoter-TSS (NM_001321211)	promoter-TSS (NM_001321211)	-324	NM_001301016	11100	Hs.155218	NM_007040	ENSG00000105323	HNRNPUL1	E1B-AP5|E1BAP5|HNRPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein-coding	8.525	5.179	7.363	8.094	9.305	5.355	7.616	3.638	0.864	3.476	1.530	7.931	10.456	8.674	0.293	7.942	7.720	8.943	11.637	15.152	14.284	11.740	8.422	24.612	26.813	6.504	7.994	9.506	15.529	15.907	17.395	12.586	17.443	9.950	12.569	12.758	10.283	5.498	2.746	6.331	9.106	2.990	4.773	7.616	7.931	2.052	3.661	4.827	3.908
1833	chr12	11987513	12016788	+	0	NA	intron (NM_001987, intron 3 of 7)	AluJb|SINE|Alu	199362	NM_001987	2120	Hs.504765	NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant 6	protein-coding	0.866	1.089	1.131	3.580	2.310	1.252	0.510	0.158	0.072	1.090	0.616	2.025	3.854	0.082	0.108	0.232	0.266	0.492	0.911	nan	2.175	2.453	0.879	0.507	0.587	0.461	0.719	5.542	6.233	0.469	0.293	0.318	0.607	0.171	0.188	0.335	0.633	1.476	0.711	1.277	0.731	0.059	0.027	0.510	2.025	0.046	0.592	0.158	0.194
3298	chr17	16990390	17016156	+	0	NA	intron (NM_201274, intron 3 of 23)	intron (NM_201274, intron 3 of 23)	57199	NM_015134	23164	Hs.462341	NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	1.079	0.637	0.901	0.160	0.468	0.150	0.179	0.193	0.087	0.098	0.074	0.246	0.523	0.008	0.041	4.119	4.564	1.775	nan	0.686	0.707	1.705	0.433	0.762	0.757	0.389	0.707	0.928	1.124	nan	0.374	2.680	3.639	0.232	0.283	0.506	0.991	0.747	0.500	0.090	0.152	0.073	0.096	0.179	0.246	0.392	0.268	2.353	0.240
3119	chr16	31190218	31193741	+	0	NA	intron (NM_001170634, intron 1 of 14)	CpG	548	NM_001170937	2521	Hs.46894	NM_004960	ENSG00000089280	FUS	ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS	FUS RNA binding protein	protein-coding	7.857	4.279	6.799	9.547	8.912	4.528	5.095	3.972	0.500	2.714	0.913	7.547	22.466	5.913	0.090	7.864	8.735	7.689	10.854	10.124	10.087	14.490	10.816	16.940	18.001	6.024	7.366	13.497	20.496	13.094	15.367	8.516	12.865	10.791	11.431	8.438	7.537	5.287	2.467	6.027	4.559	1.875	4.214	5.095	7.547	1.765	3.942	3.139	2.419
4874	chr20	20156993	20224425	+	0	NA	intron (NM_015585, intron 17 of 26)	intron (NM_015585, intron 17 of 26)	153419	NM_001167816	26074	Hs.729168	NM_015585	ENSG00000089101	CFAP61	C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4	cilia and flagella associated protein 61	protein-coding	1.861	1.517	nan	1.838	2.208	1.168	0.671	0.113	0.084	1.174	0.657	2.053	1.917	0.037	0.078	0.715	0.972	0.226	0.631	2.658	2.317	6.858	2.387	0.239	0.281	1.599	2.237	4.126	3.909	3.116	2.809	0.349	0.569	3.480	4.428	0.536	1.397	2.343	1.242	0.939	2.540	0.930	0.966	0.671	2.053	0.976	2.033	0.211	2.118
7152	chr7	8316454	8337050	+	0	NA	intron (NR_125740, intron 3 of 5)	intron (NR_125740, intron 3 of 5)	-24510	NM_004968	3382	Hs.487561	NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding	1.166	2.134	2.159	1.782	5.589	2.995	0.378	0.137	0.172	1.364	0.579	3.954	nan	0.048	0.148	1.169	0.728	0.324	nan	1.042	1.379	nan	3.251	0.946	0.978	0.365	0.594	nan	2.248	0.242	0.129	0.516	1.309	2.483	2.800	0.357	0.644	2.393	1.289	0.074	0.282	0.690	0.496	0.378	3.954	0.070	0.161	0.659	0.090
3566	chr17	75032272	75051536	+	0	NA	Intergenic	MER66C|LTR|ERV1	-42821	NM_001204408	6397	Hs.464184	NM_003003	ENSG00000129657	SEC14L1	PRELID4A|SEC14L	SEC14 like lipid binding 1	protein-coding	1.148	1.123	1.529	0.213	1.527	0.886	1.050	0.140	0.101	0.771	0.518	1.056	1.060	0.066	0.104	2.469	2.366	0.391	0.475	1.887	1.621	2.320	0.688	0.616	0.670	nan	0.925	1.345	1.938	1.465	1.186	0.702	0.848	0.720	0.654	0.417	0.652	nan	1.403	1.232	0.621	0.157	0.160	1.050	1.056	0.264	0.301	0.343	0.177
529	chr1	150513670	150523714	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-3153	NM_001288608	54507	Hs.516243	NM_019032	ENSG00000143382	ADAMTSL4	ADAMTSL-4|ECTOL2|TSRC1	ADAMTS like 4	protein-coding	nan	nan	1.728	2.694	1.933	0.862	0.378	0.238	0.178	5.008	3.189	4.664	4.881	0.723	0.187	0.579	0.602	0.885	1.046	3.693	nan	2.460	1.148	0.517	0.636	0.794	1.255	0.710	1.260	0.512	0.467	1.037	1.438	2.880	2.928	1.273	2.076	3.696	1.953	0.039	0.401	0.672	0.181	0.378	4.664	0.076	2.810	0.207	0.246
3556	chr17	73772425	73784732	+	0	NA	Intergenic	AluY|SINE|Alu	2110	NR_039892	100616282		NR_039892	ENSG00000132475	MIR4738	-	microRNA 4738	ncRNA	5.581	5.027	5.969	5.476	9.195	5.060	3.810	2.735	0.354	3.713	1.527	5.714	10.978	3.716	0.178	9.350	9.912	7.355	10.480	8.235	6.990	8.066	4.616	9.371	9.891	nan	6.232	6.640	9.081	9.555	8.875	5.309	8.517	6.948	7.826	5.824	7.219	nan	1.667	4.296	4.443	1.384	2.822	3.810	5.714	1.001	3.437	3.727	2.555
4309	chr2	43661545	43670404	+	0	NA	intron (NR_144316, intron 26 of 36)	MER44D|DNA|TcMar-Tigger	157139	NM_001083953	63892	Hs.369592	NM_022065	ENSG00000115970	THADA	ARMC13|GITA	THADA, armadillo repeat containing	protein-coding	1.105	nan	1.514	0.160	0.281	0.166	0.216	0.220	0.019	0.124	0.159	0.201	0.434	0.062	0.143	0.240	0.188	0.286	0.541	nan	0.435	0.395	0.130	0.437	0.402	0.584	0.690	0.529	0.569	0.525	0.242	0.142	0.195	0.203	0.268	0.918	nan	3.981	1.303	0.207	0.160	0.195	0.098	0.216	0.201	0.021	0.069	0.112	0.902
987	chr10	1280675	1287420	+	0	NA	intron (NM_018702, intron 5 of 9)	intron (NM_018702, intron 5 of 9)	78339	NR_015376	399706	Hs.721191	NM_001010910	ENSG00000229205	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA	0.550	0.367	0.965	1.474	1.396	0.596	1.915	0.186	0.118	0.398	0.290	6.843	2.450	0.420	0.109	0.444	0.680	0.151	0.227	1.547	2.150	3.005	1.251	2.493	3.409	0.183	0.252	2.289	2.062	0.162	0.088	0.331	0.264	0.124	0.082	0.150	0.225	0.298	0.228	0.212	1.099	0.029	0.095	1.915	6.843	1.322	4.920	0.278	0.055
7544	chr7	151586577	151598748	+	0	NA	Intergenic	Intergenic	-18346	NM_016203	51422	Hs.647072	NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding	0.711	0.470	nan	0.176	0.339	0.119	0.333	0.104	0.062	0.231	0.141	0.103	0.913	0.063	0.120	0.605	0.924	0.485	0.518	0.454	0.509	0.165	0.075	0.290	0.286	0.394	0.613	0.228	0.387	0.440	0.370	0.394	0.469	0.264	0.469	0.101	0.236	1.043	0.845	3.085	4.299	0.024	0.033	0.333	0.103	0.104	0.017	0.163	0.031
1150	chr10	78078044	78097282	+	0	NA	intron (NR_131178, intron 7 of 7)	intron (NR_131178, intron 7 of 7)	545144	NM_032024	83938	Hs.118161	NM_032024	ENSG00000148655	C10orf11	CDA017	chromosome 10 open reading frame 11	protein-coding	1.183	nan	1.185	0.084	0.318	0.156	0.086	0.189	0.100	0.122	0.074	0.323	0.378	0.068	0.063	0.309	0.243	0.159	0.211	0.260	0.356	0.442	0.157	0.102	0.158	4.609	5.235	0.579	nan	0.741	0.732	0.091	0.193	0.651	0.647	0.309	nan	1.190	0.721	0.034	0.135	0.065	0.127	0.086	0.323	0.276	0.053	0.041	0.182
5635	chr3	166658388	166663655	+	0	NA	Intergenic	AluSp|SINE|Alu	44550	NR_135545	105374194		NR_135545		LOC105374194	inv3q26.1	uncharacterized LOC105374194	ncRNA	0.988	1.196	0.644	0.202	0.291	0.121	0.144	0.299		0.238	0.391	0.069	0.205	0.042	0.029	0.306	0.166	0.093	0.242	0.494	0.406	10.786	9.958	0.196	0.206	0.782	0.944	nan	0.360	nan	0.512	0.106	0.114	2.346	2.036	0.570	1.032	0.386	0.278	0.011	0.101	0.542	0.014	0.144	0.069	0.018	0.046		0.166
4122	chr19	48693105	48708855	+	0	NA	TTS (NM_199341)	TTS (NM_199341)	27031	NM_199341	374920	Hs.664054	NM_199341	ENSG00000185453	C19orf68	-	chromosome 19 open reading frame 68	protein-coding	1.833	1.466	1.212	0.994	1.669	0.813	1.353	0.437	0.082	0.636	0.370	0.522	1.436	1.021	0.136	1.250	1.696	1.001	1.222	1.987	1.876	4.514	1.736	2.221	2.402	1.963	2.795	1.409	2.050	1.890	1.723	0.797	1.021	2.073	1.862	1.802	2.323	2.505	1.407	1.159	0.695	0.290	0.136	1.353	0.522	0.641	0.309	0.402	0.535
8164	chr9	77193657	77200500	+	0	NA	intron (NM_006914, intron 1 of 9)	intron (NM_006914, intron 1 of 9)	-83609	NR_125791	103752585	Hs.635501	NR_125791		RORB-AS1	-	RORB antisense RNA 1	ncRNA	nan	nan	nan	0.102	0.384	0.054	0.056	0.076	0.024	0.069	0.085	0.139	0.283	0.096	0.069	0.287	0.141	6.961	nan	0.223	nan	0.098	0.008	0.701	0.767	0.083	0.188	0.216	0.246	0.239	0.093	0.104	0.194	0.048	0.093	0.188	0.458	0.858	0.838	0.008	0.091	0.028		0.056	0.139		0.029	0.029	0.111
4314	chr2	44795403	44809349	+	0	NA	intron (NM_024766, intron 3 of 10)	AluSz6|SINE|Alu	213333	NM_024766	79823	Hs.468349	NM_024766	ENSG00000143919	CAMKMT	C2orf34|CLNMT|CaM KMT|Cam|KMT	calmodulin-lysine N-methyltransferase	protein-coding	0.906	nan	0.889	0.089	0.418	0.220	0.398	0.394	0.056	0.192	0.222	0.173	0.393	0.086	0.121	0.418	0.294	4.673	6.856	nan	0.532	1.335	0.680	0.421	0.416	0.433	0.651	0.291	0.326	0.466	0.218	0.142	0.304	1.096	0.904	0.372	nan	nan	0.591	0.044	0.120	0.171	0.136	0.398	0.173	0.021	0.060	0.043	0.132
5959	chr4	82721873	82740429	+	0	NA	Intergenic	Intergenic	-338069	NM_152545	153020	Hs.591696	NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding	0.850	0.666	0.806	0.197	1.655	0.761	0.654	0.077	0.047	0.092	0.093	0.310	1.161	0.017	0.063	0.214	0.219	0.250	0.338	1.060	1.215	7.046	2.353	0.269	0.194	0.367	nan	0.501	0.450	0.371	0.225	0.069	0.114	0.528	0.497	0.320	nan	0.590	0.416	1.437	0.286	0.133	0.741	0.654	0.310	0.011	0.038	0.006	0.269
2390	chr13	98923778	98950590	+	0	NA	intron (NM_005766, intron 2 of 26)	intron (NM_005766, intron 2 of 26)	76406	NR_036129	100422881		NR_036129	ENSG00000263399	MIR3170	mir-3170	microRNA 3170	ncRNA	1.492	1.691	1.497	1.299	2.446	1.364	3.059	0.097	0.109	0.721	0.406	2.404	0.772	0.061	0.083	1.539	1.768	0.397	0.799	2.566	2.207	5.514	1.973	0.170	0.164	0.470	0.535	2.344	2.669	1.088	0.772	1.311	1.766	2.876	3.450	1.455	3.113	0.718	0.417	1.135	2.433	0.632	1.374	3.059	2.404	0.670	1.326	0.791	0.808
2580	chr14	50063928	50067491	+	0	NA	non-coding (NR_037793, exon 1 of 5)	non-coding (NR_037793, exon 1 of 5)	294	NR_037792	122769	Hs.451090	NM_152329	ENSG00000165501	LRR1	4-1BBLRR|LRR-1|PPIL5	leucine rich repeat protein 1	protein-coding	12.946	6.722	7.896	12.712	7.693	3.955	11.589	5.016	0.541	3.578	2.174	10.840	13.638	5.387	0.089	11.611	9.944	11.341	15.720	17.552	15.229	13.989	9.447	20.495	20.449	6.177	7.726	12.547	19.843	20.484	21.038	8.823	13.698	13.227	15.082	9.805	7.555	7.828	4.877	11.073	9.165	2.904	6.509	11.589	10.840	1.517	6.342	4.071	2.207
7292	chr7	56030981	56051244	+	0	NA	intron (NM_001483, intron 1 of 9)	intron (NM_001483, intron 1 of 9)	8842	NM_001483	2631	Hs.591069	NM_001483	ENSG00000146729	GBAS	NIPSNAP2	glioblastoma amplified sequence	protein-coding	nan	1.901	2.407	1.492	0.848	0.402	1.135	0.674	0.199	0.744	0.488	1.035	2.889	0.777	0.155	1.229	1.447	1.833	2.940	2.151	2.017	4.551	1.839	0.864	0.810	0.956	1.405	2.892	3.594	1.052	0.998	1.155	2.344	2.124	2.512	0.984	0.973	2.480	1.139	0.484	0.344	0.394	0.401	1.135	1.035	0.106	1.954	1.429	0.250
4900	chr20	25210848	25237067	+	0	NA	Intergenic	Intergenic	-4749	NM_002862	5834	Hs.368157	NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding	1.755	3.725	nan	0.850	0.620	0.318	0.871	1.012	0.203	0.428	0.255	0.747	1.828	0.284	0.089	1.574	1.854	1.434	2.400	1.306	1.161	2.387	0.759	0.846	0.826	1.070	1.525	1.738	2.211	1.059	0.722	0.804	0.984	0.618	1.241	2.514	5.840	1.230	0.840	0.903	0.591	0.160	0.118	0.871	0.747	0.235	0.917	0.251	3.147
5125	chr21	40262485	40300946	+	0	NA	intron (NR_120405, intron 2 of 3)	intron (NR_120405, intron 2 of 3)	28638	NR_120405	400867	Hs.689509	NR_120405		LOC400867	-	uncharacterized LOC400867	ncRNA	nan	0.907	0.934	0.947	1.426	0.782	0.313	0.445	0.143	0.325	0.181	3.421	3.393	0.048	0.074	0.347	0.276	0.598	0.729	1.267	1.470	nan	0.335	0.319	0.278	0.197	nan	6.873	6.172	0.471	0.193	0.179	0.277	0.320	0.288	0.134	0.217	3.122	1.457	0.612	1.134	0.042	0.080	0.313	3.421	0.043	2.411	0.068	0.050
247	chr1	40531380	40544828	+	0	NA	TTS (NM_001142604)	TTS (NM_001142604)	25038	NM_001142604	5538	Hs.3873	NM_000310	ENSG00000131238	PPT1	CLN1|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	8.718	0.747	nan	1.022	0.393	0.120	11.749	0.252	0.205	0.198	0.226	0.223	0.426	0.128	0.160	0.369	0.381	0.612	0.604	0.727	0.952	0.293	0.148	0.395	0.517	0.437	nan	nan	2.082	0.370	0.238	0.446	nan	0.102	0.089	0.340	1.027	0.898	0.776	0.103	0.119	0.014	11.823	11.749	0.223	0.126	0.105	0.146	0.119
1340	chr11	20472120	20524970	+	0	NA	intron (NM_005788, intron 13 of 15)	intron (NM_005788, intron 13 of 15)	89469	NM_005788	10196	Hs.152337	NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding	0.915	1.322	0.892	0.472	1.756	0.863	0.138	0.147	0.090	0.493	0.263	0.630	0.593	0.037	0.093	0.585	0.535	0.213	0.318	0.948	1.099	1.271	0.699	0.372	0.357	1.550	1.784	0.877	0.938	0.876	0.653	0.326	0.609	1.384	1.969	0.853	2.999	1.158	0.610	0.742	0.799	0.383	0.101	0.138	0.630	0.018	0.038	0.225	1.208
4389	chr2	65657123	65665938	+	0	NA	Intergenic	Intergenic	-1874	NM_181784	200734	Hs.59332	NM_181784	ENSG00000198369	SPRED2	Spred-2	sprouty related EVH1 domain containing 2	protein-coding	6.272	2.613	nan	3.185	3.960	2.419	3.006	4.032	0.256	1.104	0.510	2.908	10.023	7.071	0.214	1.386	2.634	3.976	5.935	4.812	3.283	nan	2.290	9.665	10.141	3.088	3.599	5.897	8.498	3.836	3.202	0.749	1.451	1.407	1.382	1.586	1.920	3.719	2.337	3.576	3.087	0.271	2.359	3.006	2.908	1.070	4.716	0.336	0.742
289	chr1	46148134	46155592	+	0	NA	intron (NM_021639, intron 1 of 12)	CpG	439	NM_021639	60313	Hs.238432	NM_021639	ENSG00000159592	GPBP1L1	SP192	GC-rich promoter binding protein 1 like 1	protein-coding	nan	2.874	nan	5.469	4.714	2.308	2.586	3.740	0.470	3.456	1.636	2.124	12.159	4.169	0.131	5.335	4.973	6.102	9.463	9.080	7.913	5.736	2.484	19.002	20.792	5.154	nan	nan	14.665	4.797	5.153	5.711	nan	3.172	4.451	5.962	7.612	3.526	1.739	4.190	4.496	0.664	2.426	2.586	2.124	1.442	2.095	4.566	2.308
4739	chr2	224586811	224592687	+	0	NA	Intergenic	Intergenic	112570	NR_110906	130340	Hs.632555	NM_178814	ENSG00000152056	AP1S3	PSORS15	adaptor related protein complex 1 sigma 3 subunit	protein-coding	nan	1.449	0.868	0.239	0.987	0.610	2.349	0.687	0.112	0.350	0.194	0.349	nan	0.169	0.093	0.543	0.303	2.089	2.333	0.294	0.320	3.461	1.105	0.341	0.342	1.543	2.055	0.906	nan	0.428	0.265	0.271	0.227	0.351	0.836	0.483	nan	0.594	0.401	0.066	0.106	0.016	0.259	2.349	0.349	0.145	4.873	0.084	0.166
2119	chr12	105021556	105027531	+	0	NA	intron (NM_001173982, intron 2 of 2)	intron (NM_001173982, intron 2 of 2)	39132	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA	0.809	0.763	nan	1.784	3.534	1.813	1.520	0.262	0.187	0.262	0.194	7.215	0.838	0.109	0.136	0.380	0.198	0.321	0.292	4.500	5.609	0.123	0.031	1.558	1.667	1.015	1.347	3.699	6.412	1.002	0.595	0.216	0.409	0.114	0.092	0.911	2.610	2.708	1.503	0.232	4.525	0.016	0.982	1.520	7.215	0.314	5.322	0.133	0.661
7592	chr8	10904798	10924166	+	0	NA	intron (NM_173683, intron 1 of 2)	intron (NM_173683, intron 1 of 2)	10117	NR_134308	101929269	Hs.680442	NR_134308	ENSG00000254839	LOC101929269	-	uncharacterized LOC101929269	ncRNA	0.791	0.759	nan	0.845	1.740	0.911	0.676	0.071	0.058	0.792	0.340	4.464	0.610	0.106	0.078	0.590	0.894	0.130	0.156	3.018	nan	1.705	0.404	0.186	0.231	0.106	0.221	2.184	2.436	1.160	0.985	0.190	0.279	0.126	0.133	0.842	1.219	3.116	1.527	0.324	0.293	0.029	0.024	0.676	4.464	0.211	2.182	0.067	0.263
147	chr1	25985082	26010104	+	0	NA	intron (NM_020379, intron 1 of 11)	AluJb|SINE|Alu	53634	NM_020379	57134	Hs.197043	NM_020379	ENSG00000117643	MAN1C1	HMIC|MAN1A3|MAN1C|pp6318	mannosidase alpha class 1C member 1	protein-coding	1.081	0.814	nan	0.232	3.327	1.849	0.423	0.355	0.123	0.901	0.296	0.272	0.830	0.070	0.091	1.161	1.551	0.646	0.714	0.923	1.056	0.731	0.268	0.441	0.523	0.886	1.400	0.445	0.647	0.563	0.359	1.177	0.936	1.008	1.160	0.393	0.866	2.366	1.145	0.356	0.243	0.270	0.050	0.423	0.272	0.147	0.754	0.487	0.202
1249	chr10	126327215	126365300	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-46340	NR_120631	101927944	Hs.437448	NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA	nan	0.679	1.481	0.343	1.023	0.510	0.262	0.116	0.051	0.283	0.229	0.422	1.075	0.062	0.055	0.373	0.534	0.418	0.692	0.423	0.388	1.330	0.422	0.423	0.415	0.331	0.517	2.475	2.746	0.300	0.454	0.289	0.337	0.348	0.291	0.246	0.308	1.017	0.596	2.724	1.845	0.087	0.095	0.262	0.422	0.116	0.501	0.060	0.091
6846	chr6	73275741	73280829	+	0	NA	Intergenic	L1MC1|LINE|L1	-53286	NM_001160132	56479	Hs.445324	NM_019842	ENSG00000185760	KCNQ5	Kv7.5	potassium voltage-gated channel subfamily Q member 5	protein-coding	nan	nan	0.583	0.276	0.448	0.173	0.316	0.179	0.039	0.061	0.098	0.536	0.450	0.044	0.131	0.514	0.456	0.195	0.180	0.314	0.332	0.478	0.271	21.026	21.926	0.226	0.444	0.724	1.023	0.489	0.260	0.352	0.575	0.142	0.103	0.292	0.535	0.376	0.246	0.065	0.197	0.045	0.077	0.316	0.536	0.077	1.073	0.195	
5211	chr22	25092007	25104007	+	0	NA	Intergenic	Intergenic	-42893	NR_024593	646074	Hs.531306	NM_001025230		POM121L10P	-	POM121 transmembrane nucleoporin like 10, pseudogene	pseudo	1.129	nan	1.261	0.777	0.433	0.260	0.235	0.116	0.053	0.104	0.091	0.432	0.792	0.045	0.052	0.383	0.476	0.234	0.295	0.739	0.550	2.212	1.028	0.363	0.453	0.159	0.441	3.617	3.058	1.172	1.117	0.166	0.254	1.416	1.067	0.124	0.259	3.014	1.797	2.047	0.919	0.237	0.206	0.235	0.432	0.529	0.542	0.058	0.036
1142	chr10	73608840	73638911	+	0	NA	Intergenic	AluSz|SINE|Alu	-12743	NM_001042466	5660	Hs.523004	NM_002778	ENSG00000197746	PSAP	GLBA|SAP1	prosaposin	protein-coding	1.295	nan	1.172	0.436	0.917	0.411	0.558	1.088	0.305	0.371	0.189	0.557	1.156	0.502	0.091	0.647	0.850	0.890	1.550	0.715	0.678	2.554	0.608	0.862	0.808	0.957	1.241	1.389	nan	1.175	0.997	0.334	0.486	0.674	1.372	1.525	nan	0.812	0.532	0.605	0.598	0.184	0.334	0.558	0.557	0.449	0.459	0.170	1.496
5267	chr22	39045474	39054037	+	0	NA	intron (NM_001013647, intron 1 of 16)	MER1A|DNA|hAT-Charlie	2879	NM_001013647	646851	Hs.542707	NM_001013647	ENSG00000184949	FAM227A	-	family with sequence similarity 227 member A	protein-coding	2.363	nan	1.588	1.710	2.758	1.349	2.508	0.728	0.208	0.535	0.409	2.866	3.605	2.375	0.190	2.746	3.244	2.365	3.500	3.204	3.602	2.595	2.996	3.749	4.155	1.884	nan	3.572	8.510	nan	3.098	2.205	2.890	3.339	3.341	2.700	2.021	1.477	1.002	0.892	1.523	0.520	0.828	2.508	2.866	1.006	1.186	0.544	0.325
4708	chr2	216779224	216785058	+	0	NA	Intergenic	Intergenic	-73882	NR_037195	646324	Hs.655713	NR_037195	ENSG00000235770	LINC00607	-	long intergenic non-protein coding RNA 607	ncRNA	nan	0.958	nan	0.498	0.404	0.152	1.079	0.637	0.118	0.215	0.099	0.933	0.771	0.074	0.197	0.682	0.433	7.697	8.765	0.399	0.323	1.213	0.341	0.327	0.226	0.355	0.543	1.115	nan	0.560	0.252	0.314	0.439	0.138	0.226	0.350	0.606	0.629	0.336	0.105	0.152	0.033	0.176	1.079	0.933	0.051	0.105	0.406	0.063
1291	chr11	7533816	7551739	+	0	NA	intron (NM_003621, intron 1 of 23)	L2c|LINE|L2	7781	NM_003621	8495	Hs.655714	NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding	0.558	1.268	1.111	0.296	0.245	0.112	0.090	0.776	0.045	0.087	0.093	0.562	1.733	0.098	0.069	3.795	6.091	0.796	1.387	0.288	0.269	0.236	0.124	0.758	0.811	0.429	0.656	0.682	0.935	0.260	0.173	1.022	1.532	0.151	0.133	0.388	1.040	0.212	0.353	0.365	0.153	0.037	0.094	0.090	0.562	0.070	0.017	0.756	0.208
2095	chr12	97943784	97962955	+	0	NA	Intergenic	Intergenic	-4221	NR_029678	406926		NR_029678	ENSG00000207586	MIR135A2	MIRN135-2|MIRN135A2|mir-135a-2	microRNA 135a-2	ncRNA	0.748	0.809	0.760	0.253	1.850	1.029	1.283	0.115	0.145	1.556	1.008	1.171	nan	0.051	0.128	0.283	0.283	0.367	0.550	1.220	1.389	3.754	1.397	0.268	0.329	1.563	nan	5.141	nan	0.366	0.168	0.142	0.207	2.098	1.788	0.187	0.185	3.495	1.413	3.506	1.163	0.550	0.125	1.283	1.171	0.040	1.530	0.098	0.077
5584	chr3	142331815	142347292	+	0	NA	intron (NM_001145319, intron 1 of 15)	intron (NM_001145319, intron 1 of 15)	-2713	NM_002670	5357	Hs.203637	NM_002670	ENSG00000120756	PLS1	-	plastin 1	protein-coding	1.482	nan	nan	1.754	3.044	1.697	0.198	0.154	0.073	2.290	0.893	2.447	0.436	0.067	0.109	0.393	0.277	0.290	0.577	1.803	1.851	nan	5.310	0.289	0.290	2.047	nan	0.782	nan	nan	0.757	0.205	0.286	1.113	1.626	0.349	0.887	1.198	0.848	0.104	0.104	0.187	0.307	0.198	2.447	0.497	0.819	0.026	0.150
2599	chr14	56044392	56072422	+	0	NA	intron (NM_004986, intron 1 of 41)	AluSp|SINE|Alu	11482	NR_073128	3895	Hs.509414	NM_004986	ENSG00000126777	KTN1	CG1|KNT|MU-RMS-40.19	kinectin 1	protein-coding	nan	nan	1.573	1.113	0.670	0.321	0.997	1.058	0.190	0.303	0.217	0.618	1.444	0.713	0.132	0.797	0.830	1.255	2.570	0.956	0.953	1.543	0.561	5.450	5.381	1.082	1.620	2.113	2.688	1.719	1.623	0.676	1.365	2.120	3.250	1.259	1.800	nan	0.539	0.370	0.643	0.500	0.636	0.997	0.618	0.170	0.602	0.349	0.555
2601	chr14	56553946	56562328	+	0	NA	Intergenic	Intergenic	-26956	NM_021255	57161	Hs.657926	NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding	nan	nan	1.229	0.610	0.609	0.114	0.542	0.179	0.192	0.149	0.196	0.300	0.816	0.052	0.141	2.522	3.448	6.376	4.085	0.849	0.768	1.364	0.305	0.617	0.643	0.113	0.195	1.411	1.474	2.065	1.788	3.140	5.099	0.555	0.720	0.312	0.844	nan	1.005	0.719	1.990	0.104	0.046	0.542	0.300	0.047	0.514	5.724	0.207
6759	chr6	41038070	41043931	+	0	NA	promoter-TSS (NM_001329685)	promoter-TSS (NM_001329685)	293	NM_021705	4800	Hs.10441	NM_002505	ENSG00000001167	NFYA	CBF-A|CBF-B|HAP2|NF-YA	nuclear transcription factor Y subunit alpha	protein-coding	6.222	4.438	5.186	7.667	6.904	3.311	6.341	4.080	0.302	3.138	1.539	8.212	11.943	5.389	0.185	5.664	7.617	5.974	9.456	10.748	9.276	13.777	7.942	16.150	16.807	4.587	5.815	12.844	17.092	7.323	7.872	2.695	5.675	7.057	7.294	7.230	8.634	4.024	1.928	5.815	5.287	1.257	3.530	6.341	8.212	1.638	3.464	2.312	3.120
5551	chr3	133378651	133383420	+	0	NA	promoter-TSS (NM_007027)	promoter-TSS (NM_007027)	-298	NM_007027	11073	Hs.593379	NM_007027	ENSG00000163781	TOPBP1	TOP2BP1	topoisomerase (DNA) II binding protein 1	protein-coding	5.493	nan	nan	4.092	6.336	3.508	3.834	2.930	0.306	4.553	2.504	4.063	5.539	1.364	0.103	4.716	3.644	4.746	6.121	10.996	10.569	13.467	8.745	14.923	15.518	5.720	7.706	5.499	7.924	nan	8.122	3.862	5.848	3.318	4.712	3.545	4.096	4.188	2.705	3.586	2.979	0.581	2.507	3.834	4.063	1.160	1.937	1.454	0.954
5346	chr3	25333059	25351544	+	0	NA	intron (NM_001290216, intron 4 of 10)	AluSx1|SINE|Alu	-39992	NM_001290300	5915	Hs.543218	NM_000965	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RARbeta1|RRB2	retinoic acid receptor beta	protein-coding	0.686	1.260	0.664	0.062	0.258	0.095	0.347	0.130	0.070	0.009	0.072	0.077	0.142	0.135	0.051	0.187	0.105	3.569	8.893	0.271	0.365	0.092	0.052	0.094	0.137	0.343	0.564	0.131	0.140	nan	0.155	0.146	0.275	1.024	1.122	0.087	0.153	0.316	0.347	0.191	0.053	0.320	0.136	0.347	0.077	0.018	0.038	0.037	0.033
1052	chr10	17023094	17053727	+	0	NA	intron (NM_001081, intron 28 of 66)	intron (NM_001081, intron 28 of 66)	133406	NM_001081	8029	Hs.166206	NM_001081	ENSG00000107611	CUBN	IFCR|MGA1|gp280	cubilin	protein-coding	nan	0.793	0.813	0.075	0.184	0.063	0.042	1.607	0.210	0.077	0.078	0.067	0.169	0.032	0.075	0.417	0.421	3.023	6.118	0.141	0.196	0.196	0.135	0.110	0.119	1.945	2.668	0.193	0.207	0.162	0.079	0.111	0.161	0.020	0.052	0.107	0.185	0.149	0.220	0.038	0.029	0.003	0.013	0.042	0.067	0.003	0.053	0.019	0.096
5471	chr3	113462432	113468594	+	0	NA	promoter-TSS (NM_001308445)	promoter-TSS (NM_001308445)	-353	NM_001690	523	Hs.477155	NM_001690	ENSG00000114573	ATP6V1A	ATP6A1|ATP6V1A1|HO68|VA68|VPP2|Vma1	ATPase H+ transporting V1 subunit A	protein-coding	6.437	nan	3.012	5.137	5.795	2.888	3.861	5.075	0.419	2.147	0.929	6.647	5.899	2.702	0.114	6.230	5.284	7.210	10.304	8.084	nan	12.450	8.042	15.513	16.633	nan	6.879	5.826	8.213	15.256	13.931	2.451	4.278	3.807	4.336	7.550	7.217	3.893	2.102	2.692	3.369	0.758	2.392	3.861	6.647	2.487	1.797	1.527	2.969
5661	chr3	171661036	171679769	+	0	NA	Intergenic	L1ME2|LINE|L1	-51872	NR_046852	100874219	Hs.730556	NR_046852	ENSG00000234717	TMEM212-AS1	-	TMEM212 antisense RNA 1	ncRNA	1.183	1.204	0.827	0.123	0.362	0.264	1.076	0.328	0.192	0.124	0.222	0.211	0.180	0.186	0.092	0.575	0.725	2.934	6.063	0.364	0.474	0.377	0.176	0.285	0.329	0.653	0.758	0.543	0.475	0.676	0.368	0.704	1.833	0.323	0.339	0.299	0.524	0.532	0.527	0.054	0.090	0.036	0.099	1.076	0.211	0.037	0.048	0.924	0.146
974	chr1	246148835	246173322	+	0	NA	intron (NM_001167740, intron 5 of 11)	intron (NM_001167740, intron 5 of 11)	419636	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding	nan	1.248	nan	0.475	0.484	0.268	0.551	0.553	0.210	0.224	0.242	1.036	0.773	0.053	0.085	0.853	0.899	2.624	4.301	1.004	1.143	1.071	0.426	1.764	1.807	0.641	0.923	0.527	0.881	0.345	0.210	0.619	0.778	0.157	0.269	0.325	0.708	0.582	0.507	0.102	0.203	0.047	0.065	0.551	1.036	0.028	0.523	0.675	0.174
2629	chr14	60179695	60202057	+	0	NA	intron (NM_021136, intron 3 of 8)	intron (NM_021136, intron 3 of 8)	-77138	NR_049851	100847088		NR_049851	ENSG00000263629	MIR5586	-	microRNA 5586	ncRNA	nan	nan	2.793	0.182	0.292	0.089	0.703	0.123	0.073	0.092	0.107	0.177	0.415	0.034	0.124	0.298	0.182	0.184	0.282	0.465	0.506	0.132	0.080	nan	0.377	0.562	0.719	0.465	nan	1.387	1.244	0.181	0.186	0.197	0.296	8.959	12.821	0.674	0.688	0.064	0.202	0.030	0.114	0.703	0.177	0.478	0.146	0.022	7.455
8016	chr9	2282645	2304488	+	0	NA	Intergenic	Intergenic	135110	NM_001289400	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	1.109	3.917	2.897	2.800	1.670	0.756	1.996	0.122	0.066	2.900	1.052	5.406	8.131	0.039	0.089	0.194	0.128	0.440	0.821	4.537	4.841	8.542	4.350	0.608	0.589	1.002	1.644	6.108	6.824	0.654	0.533	0.197	0.236	3.693	2.937	0.235	nan	6.041	3.619	2.563	2.656	0.579	0.516	1.996	5.406	0.620	0.912	0.149	0.046
1668	chr11	116042416	116054395	+	0	NA	Intergenic	Intergenic	-417487	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA	1.359	0.872	1.059	0.103	0.812	0.387	0.393	0.032	0.041	0.571	0.483	0.804	0.796	0.073	0.077	0.286	nan	0.222	0.266	0.609	0.707	0.905	0.449	0.119	0.124	1.882	nan	1.523	0.909	2.136	1.604	0.583	0.749	0.347	0.325	2.644	7.633	1.951	1.049	0.162	0.141	0.087	1.562	0.393	0.804	0.618	1.052	0.123	3.260
8368	chrX	11070476	11099792	+	0	NA	Intergenic	L1ME3C|LINE|L1	-44272	NM_001122608	3052	Hs.211571	NM_005333	ENSG00000004961	HCCS	CCHL|LSDMCA1|MCOPS7|MLS	holocytochrome c synthase	protein-coding	0.622	nan	0.569	0.071	0.155	0.055	0.057	1.360	0.082	0.044	0.131	0.041	0.254	0.081	0.072	0.087	0.095	1.798	3.987	0.225	0.250	0.198	0.088	0.311	0.290	0.519	0.797	0.229	0.228	0.355	0.172	0.144	0.215	0.040	0.061	0.264	0.488	0.332	0.309	0.045	0.063	0.010	0.060	0.057	0.041	0.003	0.021	0.044	0.168
6278	chr5	58330481	58336591	+	0	NA	intron (NM_001165899, intron 8 of 16)	intron (NM_001165899, intron 8 of 16)	1803	NM_001197221	5144	Hs.117545	NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding	nan	nan	0.859	0.266	2.485	1.208	1.522	2.377	0.026	0.232	0.080	0.863	3.993	5.371	0.188	0.169	0.145	0.401	0.669	1.006	0.846	nan	0.392	0.310	0.334	1.397	2.348	1.937	2.030	nan	1.102	0.053	0.099	0.806	1.089	1.014	2.578	0.693	0.494	0.092	1.465	0.077	0.168	1.522	0.863	0.016	4.319		0.489
636	chr1	164654500	164709535	+	0	NA	intron (NM_001204963, intron 2 of 8)	intron (NM_001204963, intron 2 of 8)	61861	NR_038072	100505795	Hs.661039	NR_038072	ENSG00000233693	LOC100505795	-	uncharacterized LOC100505795	ncRNA	1.350	nan	1.380	0.283	0.427	0.207	0.675	0.467	0.096	0.256	0.247	0.394	0.505	0.048	0.108	0.619	0.723	0.883	2.507	0.529	nan	1.346	0.489	0.191	0.233	2.779	3.369	0.917	nan	0.492	0.342	0.532	0.589	0.460	0.489	0.602	0.989	1.173	0.814	0.094	0.374	0.078	0.816	0.675	0.394	0.071	0.189	0.126	0.353
5799	chr3	195360735	195365035	+	0	NA	Intergenic	Intergenic	16145	NR_136185	105374297	Hs.655175	NR_136185		LOC105374297	-	uncharacterized LOC105374297	ncRNA	nan	9.028	4.861	4.735	5.761	3.031	3.995	1.115	0.263	3.306	2.237	4.508	nan	1.668	0.197	4.475	7.081	4.275	5.278	6.070	5.812	8.560	2.856	12.035	10.249	3.729	5.662	11.582	13.511	4.165	4.304	5.237	9.041	2.909	1.802	4.826	5.706	4.216	2.957	5.544	3.542	0.395	1.363	3.995	4.508	2.463	2.474	3.357	2.179
117	chr1	18804890	18814162	+	0	NA	exon (NM_152375, exon 1 of 1)	exon (NM_152375, exon 1 of 1)	2102	NM_152375	127707	Hs.406913	NM_152375	ENSG00000179023	KLHDC7A	-	kelch domain containing 7A	protein-coding	1.144	4.092	nan	0.069	0.516	0.260	0.280	0.073	0.086	0.141	0.116	0.065	0.877	0.071	0.067	2.405	4.956	0.335	0.398	0.477	0.518	0.162	0.050	4.227	nan	0.290	nan	2.278	2.341	nan	1.135	3.049	4.974	1.275	1.276	0.122	0.163	2.127	1.422	6.767	0.618	0.302	0.021	0.280	0.065	0.171	0.263	3.812	0.041
2207	chr12	128717664	128736518	+	0	NA	Intergenic	Intergenic	-1960	NR_039720	100616298		NR_039720	ENSG00000265061	MIR4419B	-	microRNA 4419b	ncRNA	0.753	0.489	0.731	0.060	0.261	0.102	0.154	0.040	0.069	0.050	0.149	0.070	0.281	0.028	0.093	0.417	0.404	0.122	0.189	0.430	0.510	nan	0.041	0.165	0.126	0.114	0.217	0.957	1.806	0.709	0.822	0.582	0.693	0.185	0.193	0.646	1.805	0.538	0.577	4.940	0.094	0.050	0.008	0.154	0.070		0.027	0.483	0.185
3754	chr18	39733276	39748295	+	0	NA	Intergenic	Intergenic	-25848	NR_046456	284260	Hs.652819	NR_046174	ENSG00000267586	LINC00907	-	long intergenic non-protein coding RNA 907	ncRNA	nan	1.023	1.387	0.111	0.321	0.139	0.401	0.065	0.021	0.105	0.083	0.080	0.395	0.021	0.103	0.439	0.248	0.186	0.234	0.426	0.524	0.601	0.306	0.097	0.098	2.348	2.871	nan	0.514	2.337	2.256	0.064	0.087	0.481	1.500	2.004	6.103	0.769	0.957	0.033	0.090	0.128	0.074	0.401	0.080	0.201	0.068	0.046	3.737
7215	chr7	26539029	26601654	+	0	NA	Intergenic	Intergenic	8103	NR_022006	9808	Hs.69749	NM_014769	ENSG00000122548	KIAA0087	-	KIAA0087 lncRNA	ncRNA	2.055	1.287	2.303	2.560	2.121	0.981	0.527	0.111	0.095	0.988	0.681	0.440	0.543	0.047	0.159	0.645	0.577	0.290	nan	0.842	0.987	4.922	1.752	0.430	0.418	0.507	0.867	3.093	2.743	0.555	0.304	0.340	0.460	2.917	3.114	0.636	nan	1.639	0.984	0.562	0.749	1.059	0.261	0.527	0.440	0.091	0.394	0.166	0.805
5283	chr22	42224872	42231085	+	0	NA	Intergenic	MIR|SINE|MIR	-1105	NR_103834	6721	Hs.443258	NM_004599	ENSG00000198911	SREBF2	SREBP-2|SREBP2|bHLHd2	sterol regulatory element binding transcription factor 2	protein-coding	4.616	nan	3.017	3.745	7.008	3.238	8.168	3.023	0.489	2.578	1.057	9.666	5.433	2.268	0.176	5.192	5.188	6.889	9.635	5.951	4.600	5.503	4.579	9.124	9.633	4.683	5.673	4.255	7.852	nan	7.458	3.051	5.175	6.098	6.050	5.379	6.490	2.477	1.402	3.777	4.794	2.366	2.428	8.168	9.666	1.518	4.158	2.506	3.065
5460	chr3	111707637	111732565	+	0	NA	intron (NM_001008272, intron 3 of 4)	intron (NM_001008272, intron 3 of 4)	2094	NM_001008273	29114	Hs.169330	NM_013259	ENSG00000144834	TAGLN3	NP22|NP24|NP25	transgelin 3	protein-coding	1.655	nan	1.001	0.728	2.932	1.491	0.566	0.727	0.201	0.712	0.427	3.443	1.819	0.054	0.069	0.571	0.605	0.406	0.694	3.675	nan	3.481	1.454	0.336	0.309	nan	0.729	0.726	0.890	2.387	2.245	0.255	0.506	0.800	0.944	1.012	1.865	1.847	0.921	0.394	0.883	0.273	1.783	0.566	3.443	0.319	0.341	0.174	0.726
8290	chr9	131445397	131454087	+	0	NA	intron (NM_001248000, intron 1 of 7)	AluSx|SINE|Alu	-1767	NM_003011	6418	Hs.436687	NM_003011	ENSG00000119335	SET	2PP2A|I2PP2A|IGAAD|IPP2A2|PHAPII|TAF-I|TAF-IBETA	SET nuclear proto-oncogene	protein-coding	nan	2.514	3.166	5.179	3.303	1.602	3.554	2.649	0.353	2.150	0.866	3.599	4.248	3.789	0.121	2.616	2.681	4.218	6.221	5.550	5.440	nan	1.596	4.748	4.715	1.826	2.204	7.046	9.973	7.396	7.993	2.293	4.786	5.279	4.956	3.850	4.549	2.028	1.021	2.626	1.310	1.415	0.977	3.554	3.599	0.647	2.157	1.317	1.491
4586	chr2	169097204	169104978	+	0	NA	intron (NM_013233, intron 1 of 17)	intron (NM_013233, intron 1 of 17)	3014	NM_013233	27347	Hs.276271	NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding	4.208	3.126	nan	3.251	2.637	1.112	2.861	1.047	0.300	2.160	1.372	3.877	11.217	1.047	0.063	3.773	4.989	2.357	3.307	3.150	2.829	3.452	1.203	3.117	2.940	3.720	4.146	3.231	4.894	6.220	7.386	3.152	8.203	4.567	5.976	2.192	3.717	1.434	0.886	2.323	2.162	1.975	3.549	2.861	3.877	1.748	0.707	6.693	0.429
7572	chr7_gl000195_random	136692	139762	+	0	NA	Intergenic	Intergenic	-51492	NM_001242480	389831	Hs.743984	NM_001242480	ENSG00000276256	LOC389831	-	uncharacterized LOC389831	protein-coding	nan	nan	11.404	5.059	4.547	2.164	5.241	3.229	0.346	4.443	2.616	9.351	15.824	4.730	0.195	8.805	6.380	10.546	14.434	12.064	11.461	8.067	3.342	12.616	13.645	8.000	9.184	3.818	6.208	21.331	18.266	7.859	11.957	9.203	10.445	9.483	6.783	4.300	nan	5.259	3.130	2.622	7.132	5.241	9.351	4.103	3.795	4.409	2.867
2179	chr12	120965961	120974095	+	0	NA	Intergenic	AluSx3|SINE|Alu	-2104	NM_014868	9921	Hs.442798	NM_014868	ENSG00000022840	RNF10	RIE2	ring finger protein 10	protein-coding	3.683	2.874	2.664	3.309	2.618	1.392	1.909	1.806	0.550	1.771	1.231	3.938	6.399	3.424	0.148	3.999	3.958	4.044	6.583	5.967	5.483	nan	3.432	11.791	12.220	3.141	3.726	6.286	9.215	5.888	4.858	2.956	4.692	6.199	7.682	3.324	3.577	3.623	1.991	3.552	4.733	1.122	1.053	1.909	3.938	1.017	2.199	1.513	1.280
2172	chr12	119440359	119468638	+	0	NA	intron (NM_194286, intron 1 of 12)	intron (NM_194286, intron 1 of 12)	35198	NM_194286	84530	Hs.744964	NM_194286	ENSG00000139767	SRRM4	KIAA1853|MU-MB-2.76|nSR100	serine/arginine repetitive matrix 4	protein-coding	nan	nan	0.805	0.152	0.518	0.215	0.439	0.049	0.142	0.142	0.194	0.358	0.363	0.046	0.135	0.326	0.311	0.085	0.092	nan	nan	nan	0.446	0.110	0.126	1.076	1.593	nan	nan	1.990	1.646	0.110	0.156	0.116	0.127	1.558	4.796	nan	0.759	0.049	0.186	0.067	0.166	0.439	0.358	0.402	0.342	0.038	0.857
7577	chr8	3721535	3732844	+	0	NA	intron (NM_033225, intron 5 of 69)	intron (NM_033225, intron 5 of 69)	1125139	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding	0.464	0.592	0.473	0.046	0.771	0.484	0.137	0.066	0.056	3.108	1.653	0.021	0.046	0.058	0.070	0.305	0.258	0.155	0.220	0.913	0.846	0.199	0.144	0.135	0.218	0.105	0.121	0.393	0.367	nan	1.486	0.072	0.157	0.317	0.274	0.142	0.207	1.879	1.011	0.320	0.040	0.025		0.137	0.021	0.008	0.081	0.009	0.023
6646	chr6	19833502	19882878	+	0	NA	Intergenic	Intergenic	20589	NM_001546	3400	Hs.519601	NM_001546	ENSG00000172201	ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, HLH protein	protein-coding	1.821	nan	2.041	1.519	3.426	1.936	0.824	0.491	0.127	1.023	0.491	4.402	4.004	1.836	0.104	0.852	0.723	1.495	2.411	3.254	3.228	4.190	1.490	1.975	1.908	1.209	1.515	0.773	1.006	0.698	0.559	0.631	0.959	1.872	1.677	0.694	1.109	2.627	1.240	2.201	0.834	0.327	1.053	0.824	4.402	0.505	0.648	0.301	0.168
5333	chr3	16878405	16885511	+	0	NA	Intergenic	L1ME4a|LINE|L1	-44494	NM_001144382	23228	Hs.202010	NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding	nan	3.608	3.840	0.952	1.010	0.611	0.090	0.317	0.023	0.393	0.100	0.286	1.617	0.030	0.074	0.338	0.490	0.304	0.335	1.121	0.915	0.196	0.110	0.184	0.162	2.294	2.389	2.580	3.446	11.634	11.765	0.223	0.326	2.233	1.825	0.270	0.392	2.769	1.681	0.674	2.520	0.779	1.295	0.090	0.286	1.200	0.771	0.166	0.156
5229	chr22	28736323	28756837	+	0	NA	intron (NM_001145418, intron 2 of 22)	intron (NM_001145418, intron 2 of 22)	-109277	NR_106713	102466081		NR_106713	ENSG00000276162	MIR5739	hsa-mir-5739	microRNA 5739	ncRNA	nan	0.702	1.040	0.115	0.375	0.172	0.237	0.909	0.252	0.091	0.080	0.111	0.205	0.065	0.106	0.330	0.199	0.251	nan	0.303	0.311	1.071	0.247	0.272	0.310	4.370	4.886	0.218	0.243	1.678	1.498	0.121	0.174	0.561	0.364	0.633	nan	1.869	1.173	0.032	0.179	0.148	0.955	0.237	0.111	0.102	0.049	0.024	0.330
6620	chr6	13908855	13932511	+	0	NA	Intergenic	Intergenic	-3994	NM_001165034	221687	Hs.111164	NM_152737	ENSG00000180537	RNF182	-	ring finger protein 182	protein-coding	1.811	nan	1.245	1.401	0.565	0.374	0.715	0.390	0.136	0.390	0.257	1.087	0.743	0.188	0.108	1.280	1.023	1.727	0.989	1.488	1.260	3.571	0.981	0.560	0.563	2.640	3.225	1.715	1.960	0.708	0.499	0.610	0.934	4.408	5.999	0.721	1.992	3.189	1.514	0.108	0.449	1.655	0.888	0.715	1.087	0.329	0.113	0.414	0.554
2178	chr12	120797174	120808118	+	0	NA	intron (NM_002442, intron 4 of 14)	intron (NM_002442, intron 4 of 14)	4337	NM_002442	4440	Hs.158311	NM_002442	ENSG00000135097	MSI1	-	musashi RNA binding protein 1	protein-coding	3.519	2.288	2.363	1.690	4.206	2.193	5.822	0.123	0.053	1.296	0.646	4.857	3.461	1.397	0.105	0.627	0.744	1.314	2.100	6.928	6.432	nan	1.200	1.230	1.176	1.396	2.491	1.312	2.662	6.433	7.089	1.027	1.918	2.954	2.162	4.611	7.606	1.978	1.182	1.993	2.719	0.808	0.867	5.822	4.857	1.639	0.564	0.309	2.812
8050	chr9	13044718	13054291	+	0	NA	Intergenic	Intergenic	-76872	NR_132976	106635615		NR_132976		SNORD137	-	small nucleolar RNA, C/D box 137	snoRNA	nan	nan	0.909	0.127	0.219	0.117	3.445	0.094	0.034	0.457	0.262	0.216	1.376	0.011	0.089	0.206	0.179	0.230	0.328	0.389	0.425	8.880	2.525	0.137	0.124	0.785	1.055	0.485	0.365	0.428	0.283	0.099	0.208	7.710	7.307	0.136	0.367	4.316	1.927	0.232	0.110	2.369	0.575	3.445	0.216	0.051	0.043	0.041	0.127
7889	chr8	116659349	116681339	+	0	NA	intron (NM_001282903, intron 1 of 6)	intron (NM_001282903, intron 1 of 6)	9895	NM_001282902	7227	Hs.657018	NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding	nan	nan	1.840	0.143	0.279	0.117	0.069	0.474	0.146	0.185	0.115	0.088	0.581	0.085	0.078	0.405	0.378	0.501	0.597	1.077	1.058	nan	0.143	1.892	nan	3.954	nan	0.553	0.668	3.115	2.698	0.115	0.223	1.389	1.177	0.726	1.210	1.029	0.815	0.023	0.090	0.317	0.148	0.069	0.088	0.053	0.487	0.063	0.297
290	chr1	46594540	46603938	+	0	NA	promoter-TSS (NM_001328652)	promoter-TSS (NM_001328652)	196	NR_125987	101929626	Hs.534951	NR_125987	ENSG00000227857	LOC101929626	-	uncharacterized LOC101929626	ncRNA	6.498	4.614	nan	3.757	6.464	3.308	4.930	5.426	0.362	4.209	2.265	2.827	16.656	2.653	0.152	4.550	4.398	5.021	6.876	14.541	12.375	6.280	2.885	8.847	9.273	8.513	9.781	nan	7.518	7.814	8.222	6.079	nan	6.915	6.636	6.651	7.673	4.236	2.057	7.595	5.277	1.715	2.843	4.930	2.827	1.623	3.159	3.502	1.764
8294	chr9	131928373	131942668	+	0	NA	Intergenic	Intergenic	5020	NM_203434	389792	Hs.529857	NM_203434	ENSG00000188483	IER5L	bA247A12.2	immediate early response 5 like	protein-coding	nan	1.750	3.819	2.462	1.249	0.707	1.316	1.887	0.562	0.494	0.253	3.238	4.780	2.778	0.092	1.008	1.947	1.517	3.024	4.941	4.196	nan	0.320	0.717	0.753	0.780	1.294	6.691	8.349	1.154	0.904	0.834	1.357	0.952	1.117	0.527	0.867	0.694	0.545	3.045	1.664	0.259	0.340	1.316	3.238	0.848	2.383	0.635	0.130
712	chr1	183498035	183506156	+	0	NA	intron (NM_001331007, intron 9 of 23)	intron (NM_001331007, intron 9 of 23)	57644	NM_001190794	4688	Hs.587558	NM_000433	ENSG00000116701	NCF2	NCF-2|NOXA2|P67-PHOX|P67PHOX	neutrophil cytosolic factor 2	protein-coding	nan	nan	1.230	0.172	0.300	0.177	0.137	0.423	0.158	0.210	0.203	0.088	0.316	0.143	0.171	0.661	0.701	10.427	2.495	0.466	nan	0.443	0.252	nan	0.663	0.862	1.254	0.425	0.378	0.534	0.270	0.997	1.844	0.177	0.293	0.466	nan	0.556	0.530	0.041	0.151	0.116	0.077	0.137	0.088	0.072	0.025	0.444	0.168
5706	chr3	178275625	178281410	+	0	NA	intron (NM_001278911, intron 1 of 4)	MIRb|SINE|MIR	2029	NM_001278911	10242	Hs.478368	NM_005832	ENSG00000197584	KCNMB2	-	potassium calcium-activated channel subfamily M regulatory beta subunit 2	protein-coding	2.670	2.470	1.347	1.249	5.949	2.921	0.353	0.292	0.224	5.084	3.937	2.188	3.902	0.127	0.091	0.373	0.232	0.267	0.363	6.779	7.983	6.254	2.507	0.166	0.230	1.673	1.897	3.357	4.685	0.685	0.505	0.382	1.047	5.090	4.586	0.438	1.399	1.898	1.086	0.281	0.999	0.973	1.439	0.353	2.188	0.468	0.453	0.648	0.314
6339	chr5	77162408	77190957	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-3798	NR_105012	101929154	Hs.252895	NR_105012		LOC101929154	-	uncharacterized LOC101929154	ncRNA	0.969	nan	0.714	0.410	1.846	0.935	0.516	0.098	0.101	0.127	0.108	0.215	0.798	0.068	0.101	0.201	0.149	0.275	0.454	1.620	1.823	nan	0.265	0.114	0.135	0.505	nan	0.411	0.422	0.511	0.244	0.119	0.131	0.837	0.828	0.771	1.725	0.256	0.258	0.060	5.634	0.161	0.059	0.516	0.215	0.068	0.047	0.017	1.393
2560	chr14	36906155	36936660	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	61583	NR_138598	253970	Hs.509165	NM_001101341	ENSG00000229415	SFTA3	NANCI|SFTPH|SP-H	surfactant associated 3	protein-coding	1.164	3.826	0.650	0.511	2.032	1.172	0.353	0.161	0.111	0.237	0.133	0.776	2.013	0.065	0.108	0.145	0.104	0.194	0.219	1.172	1.276	0.213	0.084	0.234	0.228	0.861	1.072	1.540	1.508	0.679	0.314	0.129	0.172	0.231	0.235	0.131	0.160	0.835	0.598	3.847	3.757	0.081	0.039	0.353	0.776	0.088	0.103	0.033	0.076
5764	chr3	189177787	189187981	+	0	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-131651	NM_001329964	8626	Hs.137569	NM_003722	ENSG00000073282	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding	1.217	1.180	0.774	0.155	6.218	3.241	0.327	0.262	0.121	0.183	0.146	0.165	0.358	0.052	0.080	0.293	0.112	0.255	0.435	0.280	0.398	1.759	0.730	0.345	0.329	0.353	0.472	0.406	0.433	0.809	0.434	0.102	0.214	0.182	0.196	0.431	0.568	0.602	0.436	0.033	0.094	0.046	0.139	0.327	0.165	0.028	0.040	0.049	0.073
7948	chr8	136002887	136023812	+	0	NA	Intergenic	Intergenic	151171	NR_125427	101927845	Hs.559609	NR_125427	ENSG00000251218	LOC101927845	-	uncharacterized LOC101927845	ncRNA	nan	0.680	2.606	0.088	0.355	0.142	0.282	0.067	0.046	0.083	0.037	0.269	0.502	0.047	0.070	0.228	0.118	0.169	0.204	0.425	0.596	5.458	2.082	nan	0.533	0.107	0.193	0.798	0.733	0.360	0.171	0.341	0.999	0.102	0.133	0.295	0.724	0.651	0.529	0.035	0.102	0.023	0.388	0.282	0.269	0.093	0.088	0.845	0.088
4529	chr2	142991003	143006491	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-109477	NM_018557	53353	Hs.656461	NM_018557	ENSG00000168702	LRP1B	LRP-1B|LRP-DIT|LRPDIT	LDL receptor related protein 1B	protein-coding	0.642	nan	0.577	0.068	0.238	0.083	0.091	0.077	0.093	0.070	0.089	0.085	0.359	0.014	0.090	0.338	0.205	12.702	6.998	0.189	0.260	0.077	0.047	0.111	0.135	1.245	1.447	0.316	0.353	0.366	0.144	0.127	0.175	0.192	0.147	0.268	0.506	0.208	0.228	0.029	0.040	0.062	0.062	0.091	0.085	0.038	0.019	0.068	0.079
8131	chr9	37957106	38033056	+	0	NA	intron (NM_003028, intron 2 of 5)	intron (NM_003028, intron 2 of 5)	74129	NM_003028	6461	Hs.521482	NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding	0.828	nan	2.413	0.777	1.061	0.532	0.654	0.876	0.157	0.669	0.308	0.876	1.093	0.097	0.072	0.787	1.043	1.340	2.334	1.041	0.894	2.410	0.711	0.523	0.526	0.876	1.382	1.778	2.124	1.139	0.971	0.745	1.067	0.910	1.224	0.308	0.626	4.187	2.204	0.878	0.171	0.222	0.483	0.654	0.876	0.142	1.643	0.404	0.167
6040	chr4	144256722	144312805	+	0	NA	intron (NM_207123, intron 1 of 10)	intron (NM_207123, intron 1 of 10)	20150	NR_036091	100423017		NR_036091	ENSG00000265623	MIR3139	-	microRNA 3139	ncRNA	0.903	0.830	1.127	0.355	0.265	0.126	0.179	0.491	0.082	0.296	0.256	0.485	0.734	0.234	0.086	0.254	0.277	0.572	1.025	0.447	0.456	0.143	0.059	0.296	0.295	0.221	0.344	0.522	0.579	0.669	0.568	0.247	0.452	1.397	2.176	0.379	0.830	0.834	0.561	0.017	0.115	0.374	0.223	0.179	0.485	0.014	0.132	0.172	0.260
2593	chr14	53157197	53179702	+	0	NA	Intergenic	AluY|SINE|Alu	-5447	NM_002806	5706	Hs.156171	NM_002806	ENSG00000100519	PSMC6	CADP44|HEL-S-73|P44|SUG2|p42	proteasome 26S subunit, ATPase 6	protein-coding	nan	nan	1.710	1.969	1.380	0.754	1.353	1.126	0.222	0.523	0.344	1.305	2.526	0.963	0.157	1.948	1.835	2.424	4.082	2.403	2.382	2.301	1.070	4.881	5.333	1.502	1.972	2.341	3.646	3.431	3.092	1.200	2.124	1.657	1.727	1.399	1.924	nan	0.803	1.338	1.158	0.286	1.032	1.353	1.305	0.271	0.911	0.433	0.587
6070	chr4	167114948	167122125	+	0	NA	Intergenic	Intergenic	324126	NM_001204760	7092	Hs.106513	NM_012464	ENSG00000038295	TLL1	ASD6|TLL	tolloid like 1	protein-coding	nan	nan	nan	0.148	0.181	0.089	0.044	0.382	0.179	0.110	0.068	0.185	0.212	0.030	0.086	0.272	0.157	10.356	8.936	0.167	0.144	0.225	0.087	0.169	0.312	0.199	0.294	0.195	0.220	0.229	0.117	0.165	0.399	0.035	0.071	0.197	0.138	0.272	0.206		0.037	0.013	0.088	0.044	0.185		0.156	0.107	0.034
5670	chr3	173407836	173430891	+	0	NA	intron (NM_014932, intron 3 of 6)	MLT1D|LTR|ERVL-MaLR	219223	NR_046664	100874010	Hs.624265	NR_046664	ENSG00000228213	NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA	0.906	1.772	0.689	0.159	2.499	1.537	0.795	0.140	0.083	0.732	0.465	0.702	0.266	0.089	0.089	0.294	0.184	0.222	0.324	0.613	0.704	2.513	1.696	0.245	0.289	2.012	2.179	0.320	0.297	0.584	0.236	0.173	0.225	2.487	3.544	0.250	0.359	0.893	0.586	0.171	0.112	0.669	0.142	0.795	0.702	0.013	0.022	0.026	0.037
2920	chr15	67368686	67419389	+	0	NA	intron (NM_005902, intron 1 of 8)	intron (NM_005902, intron 1 of 8)	-24017	NM_001145102	4088	Hs.727986	NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding	0.989	0.961	nan	0.182	0.310	0.177	0.392	2.298	0.251	0.118	0.100	0.238	0.395	0.045	0.074	0.268	0.175	1.193	3.638	0.307	0.323	nan	0.194	0.300	0.299	0.336	0.596	0.777	0.768	0.420	0.232	0.430	0.520	0.466	0.919	0.159	0.216	0.396	0.378	0.018	0.108	0.101	0.087	0.392	0.238	0.174	0.075	0.396	0.075
6305	chr5	69869920	69909659	+	0	NA	Intergenic	AluSz6|SINE|Alu	-8160	NR_027386	653188	Hs.631974	NR_027386	ENSG00000253203	GUSBP3	-	glucuronidase, beta pseudogene 3	pseudo	0.713	1.760	0.678	0.924	0.719	0.366	0.818	0.207	0.060	2.251	1.473	0.512	2.066	0.306	0.141	0.887	0.829	0.921	1.282	1.310	1.270	3.922	2.052	0.908	0.772	2.218	2.391	1.423	1.820	1.032	0.849	0.222	0.497	3.681	5.621	0.351	0.471	3.463	1.835	0.336	0.854	3.094	0.655	0.818	0.512	0.513	0.427	0.329	0.113
2038	chr12	79403437	79418339	+	0	NA	intron (NM_001291901, intron 2 of 9)	intron (NM_001291901, intron 2 of 9)	-28545	NM_001135806	6857	Hs.310545	NM_005639	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin 1	protein-coding	nan	1.081	0.762	2.701	3.829	1.901	0.257	0.208	0.130	2.194	1.216	3.549	2.056	0.043	0.084	0.278	0.231	0.125	0.197	2.178	2.444	2.934	1.886	0.259	0.249	1.699	1.806	nan	7.188	0.581	0.320	0.118	0.241	1.653	2.862	0.471	0.986	nan	0.671	0.317	1.522	0.471	0.091	0.257	3.549	0.026	0.763	0.024	0.271
1159	chr10	80205972	80234036	+	0	NA	Intergenic	Intergenic	192919	NR_073447	414243	Hs.55047	NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA	0.829	1.050	1.328	0.447	1.243	0.665	0.399	0.101	0.086	0.362	0.107	3.957	1.041	0.050	0.053	1.130	1.734	0.587	0.619	1.081	1.107	3.155	1.187	0.344	0.431	0.600	0.745	2.526	2.289	0.515	0.401	0.456	0.666	0.121	0.165	0.363	1.274	0.660	0.447	1.499	0.281	0.030	0.260	0.399	3.957	0.421	0.180	0.480	0.314
4512	chr2	137155074	137168436	+	0	NA	Intergenic	L2c|LINE|L2	-286030	NM_003467	7852	Hs.593413	NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS	C-X-C motif chemokine receptor 4	protein-coding	nan	0.617	nan	0.079	0.255	0.108	0.447	0.047	0.111	0.070	0.083	0.117	0.812	0.046	0.049	0.444	0.254	0.122	0.179	0.393	0.523	1.046	0.305	0.156	0.125	4.284	4.227	0.338	nan	0.665	0.622	0.161	0.224	0.061	0.133	0.306	0.596	0.401	0.306	0.918	0.153	0.022	0.256	0.447	0.117	0.166	0.023	0.045	0.282
6238	chr5	38420757	38429486	+	0	NA	exon (NM_182798, exon 8 of 17)	exon (NM_182798, exon 8 of 17)	-20457	NM_182801	133584	Hs.20103	NM_152403	ENSG00000164318	EGFLAM	AGRINL|AGRNL|PIKA	EGF like, fibronectin type III and laminin G domains	protein-coding	2.714	1.378	nan	0.314	0.309	0.221	0.327	0.185	0.204	0.180	0.187	0.221	0.496	0.063	0.115	0.401	0.129	0.307	0.375	0.347	0.397	0.181	0.105	0.306	0.297	0.292	0.650	0.775	0.716	13.209	14.341	0.201	0.267	0.473	0.640	1.369	4.086	0.830	0.790	0.042	0.214	0.219	2.478	0.327	0.221	2.261	0.117	0.011	1.740
3110	chr16	30437069	30458007	+	0	NA	Intergenic	L2b|LINE|L2	-6165	NR_134470	79077	Hs.632191	NM_024096	ENSG00000179958	DCTPP1	CDA03|RS21C6|XTP3TPA	dCTP pyrophosphatase 1	protein-coding	1.566	1.138	1.385	1.679	1.063	0.639	1.185	0.464	0.132	0.630	0.339	1.149	3.669	0.896	0.104	0.993	1.255	1.023	1.301	1.165	1.114	4.078	1.227	2.907	3.062	1.048	1.493	2.978	5.054	1.438	1.548	1.623	2.034	1.518	1.619	1.374	1.991	1.282	0.755	0.843	0.746	0.225	0.428	1.185	1.149	0.243	0.838	0.616	0.414
8125	chr9	36978897	36987258	+	0	NA	intron (NM_001280553, intron 4 of 7)	MER20B|DNA|hAT-Charlie	51399	NM_001280549	5079	Hs.654464	NM_016734	ENSG00000196092	PAX5	ALL3|BSAP	paired box 5	protein-coding	0.881	nan	1.065	0.647	0.361	0.144	0.430	0.065	0.096	0.707	0.370	0.672	0.755	0.065	0.079	0.334	0.491	0.135	0.190	0.670	0.697	8.336	2.736	0.268	0.244	0.590	1.028	0.672	0.666	0.773	0.574	0.323	0.470	3.810	3.970	0.400	1.072	1.412	0.941	0.047	0.344	1.166	0.237	0.430	0.672	0.199	0.109	0.071	0.134
2332	chr13	69794278	69799129	+	0	NA	intron (NR_125752, intron 1 of 3)	HERV17-int|LTR|ERV1	225	NR_125752	103689913	Hs.585628	NR_125752		LINC00383	LINC00401	long intergenic non-protein coding RNA 383	ncRNA	nan	0.693	0.539	3.618	0.331	0.178	0.246	0.126	0.066	0.064	0.085	0.271	0.191	0.063	0.047	0.485	0.340	0.436	0.227	0.278	0.323	18.656	8.637	0.172	0.191	0.103	0.241	0.183	0.226	nan	0.130	0.133	0.176	0.085	0.051	0.282	nan	0.179	0.152	0.011	1.395		0.129	0.246	0.271	0.082	0.020	0.083	0.051
4644	chr2	190623106	190640064	+	0	NA	Intergenic	L1MB3|LINE|L1	-3661	NM_022353	64172	Hs.60772	NM_022353	ENSG00000128694	OSGEPL1	OSGEPL|Qri7	O-sialoglycoprotein endopeptidase like 1	protein-coding	1.800	nan	1.407	1.123	1.186	0.681	0.659	0.401	0.104	0.416	0.391	0.755	2.141	0.692	0.096	3.113	2.569	1.638	1.677	1.403	1.354	1.366	0.657	8.869	9.209	1.588	1.835	1.779	2.300	3.596	3.326	2.128	2.966	0.829	0.644	2.745	5.742	0.851	0.481	0.653	0.507	0.146	0.458	0.659	0.755	0.149	0.556	0.963	2.227
6973	chr6	134349803	134385855	+	0	NA	intron (NM_145176, intron 1 of 4)	AluSz6|SINE|Alu	5960	NM_145176	154091	Hs.486508	NM_145176	ENSG00000146411	SLC2A12	GLUT12|GLUT8	solute carrier family 2 member 12	protein-coding	0.988	1.096	1.482	1.339	0.397	0.156	1.521	0.281	0.129	0.191	0.176	0.879	6.584	0.218	0.130	0.500	0.395	1.158	1.758	3.521	3.264	nan	2.034	0.434	0.425	1.733	2.112	1.009	0.903	0.738	0.570	0.301	0.448	1.855	2.202	0.234	nan	0.789	0.579	0.118	1.116	0.474	0.242	1.521	0.879	0.065	0.525	0.190	0.148
6354	chr5	87949007	87999117	+	0	NA	intron (NR_015436, intron 1 of 4)	CpG	200	NR_024383	645323	Hs.12827	NR_015436	ENSG00000245526	LINC00461	EyeLinc1|VISC|Visc-1a|Visc-1b|Visc-2	long intergenic non-protein coding RNA 461	ncRNA	1.957	2.348	0.792	0.340	0.230	0.096	0.083	1.623	0.241	1.150	0.733	0.191	1.923	0.109	0.105	1.931	2.412	5.690	6.602	1.687	1.565	1.443	0.528	2.783	2.818	2.689	3.202	1.851	2.322	3.146	3.540	0.979	2.470	15.047	13.012	0.306	nan	0.743	0.536	0.948	1.762	3.469	0.267	0.083	0.191	0.276	1.011	1.404	0.218
1024	chr10	12668291	12699117	+	0	NA	intron (NM_020397, intron 2 of 9)	intron (NM_020397, intron 2 of 9)	11492	NR_039701	100616320		NR_039701	ENSG00000283699	MIR4481	-	microRNA 4481	ncRNA	nan	1.309	0.708	2.217	0.722	0.379	0.405	0.236	0.147	0.923	0.513	1.966	2.672	0.071	0.075	0.440	0.442	0.260	0.444	1.597	1.392	4.791	1.350	0.114	0.145	1.326	1.745	4.488	5.155	0.332	0.340	0.142	0.309	1.078	1.035	0.400	0.959	1.128	0.622	2.068	1.299	0.312	0.082	0.405	1.966	0.330	1.018	0.134	0.285
2867	chr15	46599071	46615813	+	0	NA	Intergenic	Intergenic	610049	NR_135680	105370802	Hs.447522	NR_135680	ENSG00000259200	LOC105370802	-	uncharacterized LOC105370802	ncRNA	1.138	0.672	nan	0.147	0.880	0.564	0.214	0.049	0.048	0.411	0.384	1.326	0.633	0.059	0.052	0.379	0.332	0.499	0.335	1.642	1.770	1.104	0.405	0.256	0.262	0.441	nan	0.260	0.325	4.727	4.438	0.387	0.628	2.745	2.205	0.583	1.357	1.793	0.911	0.158	0.159	0.347	0.549	0.214	1.326	1.543	0.064	0.065	0.368
2871	chr15	48003460	48020956	+	0	NA	intron (NM_153617, intron 1 of 17)	intron (NM_153617, intron 1 of 17)	1522	NM_153618	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding	1.525	1.477	nan	1.492	0.987	0.604	0.709	0.099	0.110	0.340	0.291	1.312	12.098	0.037	0.102	0.183	0.178	0.216	0.445	1.421	1.084	1.075	0.334	0.307	0.261	1.106	nan	1.381	1.546	1.516	1.304	0.060	0.173	0.991	1.187	1.964	4.364	2.037	1.058	0.660	2.584	0.380	0.452	0.709	1.312	0.462	1.133	0.022	2.351
7842	chr8	102370643	102376845	+	0	NA	Intergenic	Intergenic	-7377	NR_002182	83955	Hs.567608	NM_032031	ENSG00000228224	NACAP1	FKSG17	nascent polypeptide associated complex alpha subunit pseudogene 1	pseudo	1.314	nan	7.804	4.011	4.367	2.073	1.850	0.155	0.154	1.467	0.845	10.899	13.532	0.017	0.056	0.247	0.245	0.477	1.167	9.614	9.969	7.210	2.499	0.394	0.482	0.607	nan	13.124	13.934	nan	0.153	0.472	0.944	6.664	5.874	0.248	nan	4.121	2.182	4.723	4.222	2.471	0.522	1.850	10.899	0.096	3.972	0.068	0.168
8269	chr9	127176570	127214164	+	0	NA	Intergenic	AluSz6|SINE|Alu	-17615	NM_002799	5695	Hs.213470	NM_002799	ENSG00000136930	PSMB7	Z	proteasome subunit beta 7	protein-coding	nan	nan	2.840	1.456	0.618	0.346	0.433	0.137	0.128	1.202	0.550	0.786	nan	0.204	0.098	0.638	0.822	0.570	0.806	0.912	1.027	1.227	0.431	0.913	1.176	0.400	nan	0.995	1.823	1.061	0.774	0.324	0.588	0.819	0.676	0.604	0.601	nan	1.411	1.113	0.180	0.091	0.108	0.433	0.786	0.299	0.266	0.245	0.131
13	chr1	1279086	1296139	+	0	NA	TTS (NM_001282585)	TTS (NM_001282585)	-3120	NM_001330311	1855	Hs.731450	NM_004421	ENSG00000107404	DVL1	DRS2|DVL|DVL1L1|DVL1P1	dishevelled segment polarity protein 1	protein-coding	1.846	nan	4.377	1.004	0.859	0.442	0.446	1.562	0.357	0.359	0.165	0.433	1.223	1.037	0.109	1.070	1.834	0.850	1.297	1.794	1.996	1.251	0.452	3.328	3.100	1.235	nan	nan	4.394	nan	1.394	0.897	1.510	0.554	0.410	3.576	4.929	0.779	0.456	0.382	0.650	0.109	0.162	0.446	0.433	0.503	0.582	0.383	1.119
3953	chr19	5935330	5990734	+	0	NA	intron (NM_003624, intron 1 of 16)	intron (NM_003624, intron 1 of 16)	15288	NM_001300865	8498	Hs.531752	NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding	1.545	1.745	2.229	2.736	2.257	1.241	0.674	0.325	0.105	1.352	0.724	3.283	3.601	0.345	0.071	0.944	1.338	1.163	1.514	5.254	5.866	2.030	0.748	1.286	1.279	0.924	1.438	9.061	nan	1.363	1.071	0.690	1.095	1.808	2.554	0.597	0.804	3.171	1.560	1.888	0.840	0.562	0.227	0.674	3.283	0.177	1.938	0.406	0.258
7942	chr8	134296361	134311070	+	0	NA	intron (NM_006096, intron 1 of 15)	intron (NM_006096, intron 1 of 15)	5832	NM_001258433	10397	Hs.372914	NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding	nan	1.457	4.265	3.537	1.198	0.611	0.462	0.545	0.075	0.437	0.215	1.041	6.823	0.294	0.082	0.643	1.434	0.679	1.016	1.619	1.461	5.215	1.380	nan	3.389	0.429	0.886	2.687	2.715	1.022	1.485	0.581	1.002	0.702	0.468	1.009	2.350	1.135	0.882	2.212	1.026	0.064	0.212	0.462	1.041	0.483	1.825	0.242	1.175
7599	chr8	12934486	12991870	+	0	NA	intron (NM_182643, intron 7 of 17)	AluSx1|SINE|Alu	10575	NM_001164271	10395	Hs.134296	NM_006094	ENSG00000164741	DLC1	ARHGAP7|HP|STARD12|p122-RhoGAP	DLC1 Rho GTPase activating protein	protein-coding	0.762	0.603	nan	0.053	0.188	0.075	0.094	0.590	0.132	0.107	0.126	0.084	0.078	0.149	0.116	1.339	1.756	4.418	5.991	0.254	nan	0.107	0.064	0.647	0.724	0.578	0.834	0.077	0.101	0.895	0.924	0.329	0.685	0.072	0.076	0.512	1.132	0.307	0.461	0.016	0.039	0.015	0.034	0.094	0.084	0.002	0.039	0.293	0.412
1514	chr11	72627249	72635050	+	0	NA	intron (NM_014824, intron 9 of 19)	L1M5|LINE|L1	40184	NR_039664	100616233		NR_039664	ENSG00000265421	MIR4459	-	microRNA 4459	ncRNA	nan	0.929	0.661	0.115	0.377	0.242	0.193	0.237	0.082	0.083	0.157	0.200	0.265	0.089	0.176	5.255	3.165	0.408	0.441	0.591	0.805	0.267	0.172	1.423	1.425	1.031	1.315	0.368	0.472	0.510	0.318	0.393	0.503	0.491	0.252	0.238	0.603	0.771	0.468	0.072	0.158	0.049	4.340	0.193	0.200	0.029	0.026	0.153	0.127
4906	chr20	29556606	29574325	+	0	NA	intron (NR_133643, intron 2 of 3)	AluSz6|SINE|Alu	4898	NR_133643	105379478	Hs.98121	NR_133643		LINC01598	-	long intergenic non-protein coding RNA 1598	ncRNA	0.765	1.001	nan	0.074	0.186	0.109	0.196	0.167	0.155	0.098	0.120	0.047	0.352	0.098	0.107	0.557	0.342	0.199	0.299	0.215	0.297	0.210	0.099	0.214	0.190	0.360	0.605	0.141	0.218	0.528	0.333	0.201	0.209	0.215	0.246	0.188	0.231	0.557	0.531	0.038	0.077	0.139	0.050	0.196	0.047	0.066	0.029	0.050	0.105
1647	chr11	112970029	112978566	+	0	NA	intron (NM_001076682, intron 2 of 19)	intron (NM_001076682, intron 2 of 19)	-140115	NR_120563	101928847	Hs.711235	NR_120563	ENSG00000247416	LOC101928847	-	uncharacterized LOC101928847	ncRNA	0.683	0.906	0.584	0.708	0.361	0.187	0.328	0.140	0.071	0.351	0.493	0.279	0.651	0.049	0.108	8.558	7.726	6.399	2.868	0.941	1.223	0.473	0.242	1.256	1.400	1.131	nan	0.838	1.811	0.627	0.408	0.767	1.599	0.750	0.894	0.252	0.765	1.313	0.775	0.118	0.077	0.089	0.262	0.328	0.279	0.126	0.053	0.659	0.287
597	chr1	156771073	156786583	+	0	NA	intron (NM_001161441, intron 7 of 8)	intron (NM_001161441, intron 7 of 8)	-6714	NM_001007792	4914	Hs.406293	NM_002529	ENSG00000198400	NTRK1	MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA	neurotrophic receptor tyrosine kinase 1	protein-coding	nan	nan	2.525	0.406	0.447	0.187	0.651	2.068	0.425	0.435	0.284	0.185	0.741	0.196	0.119	0.826	0.920	0.678	1.021	1.149	nan	1.116	0.381	0.354	0.444	1.601	2.137	1.916	2.766	1.910	2.280	1.309	1.373	1.366	1.488	3.352	8.031	1.487	1.003	3.870	4.178	0.431	0.187	0.651	0.185	1.035	0.188	0.358	3.716
4372	chr2	57937139	57954393	+	0	NA	Intergenic	L1MB3|LINE|L1	-189020	NM_001288837	7444	Hs.715298	NM_006296	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding	0.724	nan	0.695	0.198	0.888	0.503	0.236	0.095	0.056	0.209	0.167	0.603	0.391	0.057	0.137	0.848	1.088	9.664	7.365	1.312	1.393	0.769	0.246	0.379	0.373	1.454	1.369	0.461	0.429	0.543	0.253	1.292	2.094	0.363	0.389	0.275	0.495	0.927	0.687	0.049	0.334	0.154	0.184	0.236	0.603	0.023	0.106	0.929	0.122
6603	chr6	7540865	7564677	+	0	NA	intron (NM_001008844, intron 1 of 23)	AluSz|SINE|Alu	10963	NM_004415	1832	Hs.519873	NM_004415	ENSG00000096696	DSP	DCWHKTA|DP	desmoplakin	protein-coding	1.767	1.569	1.823	3.513	0.698	0.444	0.789	0.110	0.041	1.770	0.969	1.811	1.626	0.221	0.146	1.273	1.812	5.300	6.115	1.447	1.234	3.629	1.048	1.388	1.556	0.113	0.249	2.722	3.691	0.501	0.331	1.346	2.705	3.648	4.259	0.455	0.759	2.434	1.173	0.425	1.990	1.115	0.611	0.789	1.811	0.192	0.520	0.984	0.063
7013	chr6	142615697	142662629	+	0	NA	intron (NM_001032394, intron 2 of 24)	(TA)n|Simple_repeat|Simple_repeat	16107	NM_001032395	57211	Hs.743302	NM_020455	ENSG00000112414	ADGRG6	APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR	adhesion G protein-coupled receptor G6	protein-coding	nan	0.725	nan	0.218	0.278	0.144	0.194	0.236	0.110	0.044	0.093	0.311	1.374	4.007	0.164	1.242	1.120	3.077	4.445	0.427	0.475	0.280	0.151	0.371	0.445	0.116	0.213	0.421	0.491	0.611	0.273	0.227	0.384	0.104	0.127	0.194	0.269	0.194	0.258	0.236	0.205	0.016	0.054	0.194	0.311	0.022	0.060	0.072	0.098
4867	chr20	17944815	17955829	+	0	NA	promoter-TSS (NM_152227)	promoter-TSS (NM_152227)	-688	NM_152227	27131	Hs.316890	NM_014426	ENSG00000089006	SNX5	-	sorting nexin 5	protein-coding	5.681	nan	3.399	4.881	4.036	2.198	3.071	4.275	0.579	2.161	1.237	3.272	7.291	3.080	0.131	9.120	7.306	5.342	8.092	6.335	6.524	6.649	4.663	13.704	13.778	5.730	6.741	7.589	10.444	11.144	11.628	7.230	11.357	5.007	5.794	10.297	8.739	2.568	1.609	2.657	1.874	1.189	1.685	3.071	3.272	1.404	2.661	3.869	3.355
242	chr1	40251594	40267783	+	0	NA	Intergenic	Intergenic	5040	NR_135805	101929536	Hs.552820	NR_135805	ENSG00000261798	LOC101929536	-	uncharacterized LOC101929536	ncRNA	9.233	1.164	nan	7.909	0.669	0.464	3.622	0.144	0.079	0.875	0.453	1.657	1.403	0.422	0.107	0.292	0.254	0.675	1.055	1.613	1.559	1.616	0.543	0.878	0.948	0.734	nan	20.815	24.887	0.723	0.705	1.125	nan	0.404	0.408	0.730	1.014	31.660	22.206	0.414	0.726	0.029	0.117	3.622	1.657	0.109	0.326	0.355	0.152
32	chr1	3081027	3091074	+	0	NA	intron (NM_199454, intron 1 of 16)	MIR|SINE|MIR	41511	NR_036215	100422968		NR_036215	ENSG00000283572	MIR4251	-	microRNA 4251	ncRNA	1.606	nan	0.955	0.071	1.972	1.051	0.369	0.090	0.016	0.031	0.065	0.072	0.509	0.113	0.073	0.155	0.092	0.119	0.179	0.294	0.317	0.059	0.054	0.170	0.218	1.295	nan	nan	0.136	nan	0.123	0.180	0.191	0.033	0.071	0.079	0.095	0.154	0.168	9.298	0.063	0.019	0.007	0.369	0.072	0.745	0.333	0.148	0.025
443	chr1	110161816	110176446	+	0	NA	intron (NM_203404, intron 3 of 15)	intron (NM_203404, intron 3 of 15)	1082	NM_203404	271	Hs.82927	NM_004037	ENSG00000116337	AMPD2	PCH9|SPG63	adenosine monophosphate deaminase 2	protein-coding	nan	0.954	1.075	0.547	2.319	0.943	1.657	1.268	0.142	0.566	0.274	0.672	1.941	1.096	0.091	1.383	2.186	0.715	1.323	2.949	nan	2.560	0.918	1.940	2.012	1.618	2.520	2.657	3.842	1.989	2.262	0.891	1.389	0.631	0.637	1.198	2.225	1.777	0.969	2.890	3.823	0.143	0.409	1.657	0.672	0.618	0.697	0.784	0.854
5611	chr3	154723921	154752963	+	0	NA	Intergenic	Intergenic	-58994	NM_000902	4311	Hs.307734	NM_000902	ENSG00000196549	MME	CALLA|CD10|CMT2T|NEP|SCA43|SFE	membrane metalloendopeptidase	protein-coding	nan	0.968	0.553	0.186	0.249	0.121	0.132	0.374	0.183	0.129	0.142	0.062	0.192	0.041	0.076	0.558	0.329	6.456	5.662	0.239	0.342	0.227	0.092	0.520	0.610	0.219	nan	0.191	0.164	0.655	0.292	0.319	0.481	0.043	0.071	0.243	0.397	0.160	0.234	0.033	0.046	0.010	0.052	0.132	0.062	0.023	0.014	0.062	0.059
7338	chr7	76573778	76595412	+	0	NA	Intergenic	Intergenic	-25544	NR_023383	441263	Hs.675888	NR_023383	ENSG00000265479	DTX2P1-UPK3BP1-PMS2P11	PMS2L11	DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene	pseudo	nan	0.880	1.023	0.961	0.550	0.208	0.464	0.560	0.305	0.654	0.406	0.607	0.936	0.431	0.136	0.682	0.834	0.500	nan	0.997	1.002	6.101	1.588	0.351	0.305	0.274	nan	0.495	nan	0.651	0.417	0.320	0.466	1.908	2.830	0.445	0.986	3.384	1.748	0.166	0.324	1.002	0.563	0.464	0.607	0.367	0.179	0.077	0.154
2234	chr13	22456335	22472626	+	0	NA	Intergenic	(CATA)n|Simple_repeat|Simple_repeat	-12181	NR_047040	100874182	Hs.148951	NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA	0.596	0.687	0.802	0.566	1.112	0.482	0.091	0.097	0.078	0.655	0.278	3.117	1.079	0.059	0.075	0.991	1.340	0.218	nan	0.816	0.745	0.095	0.060	0.285	0.346	0.299	0.526	2.007	1.937	0.442	0.179	0.519	1.099	0.367	0.321	0.094	0.172	4.535	2.340	0.520	0.284	0.029	0.099	0.091	3.117	0.006	0.552	0.796	0.038
7938	chr8	131454098	131458213	+	0	NA	promoter-TSS (NM_018482)	promoter-TSS (NM_018482)	-249	NM_018482	50807	Hs.655552	NM_018482	ENSG00000153317	ASAP1	AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein-coding	8.137	2.245	1.196	2.430	2.924	1.053	4.071	9.469	0.932	0.650	0.557	0.263	3.448	2.400	0.073	1.192	1.384	4.185	7.370	2.505	2.129	6.340	2.578	nan	21.129	4.665	6.634	3.242	5.181	3.505	3.383	3.779	5.864	3.854	3.008	2.836	1.988	3.255	2.064	3.969	0.459	0.694	1.657	4.071	0.263	0.737	6.667	0.870	0.866
5252	chr22	36230732	36237406	+	0	NA	intron (NM_001082578, intron 2 of 13)	intron (NM_001082578, intron 2 of 13)	2561	NM_001082577	23543	Hs.282998	NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding protein, fox-1 homolog 2	protein-coding	3.299	nan	3.779	2.628	2.133	1.254	2.786	3.663	0.244	1.804	0.926	4.092	7.334	1.975	0.106	3.907	3.627	3.095	6.312	8.255	6.894	6.341	1.745	5.468	5.805	5.415	nan	3.594	6.526	nan	4.597	1.037	1.379	5.436	8.080	1.546	3.121	2.889	1.301	2.370	2.915	1.414	0.428	2.786	4.092	1.303	2.418	1.056	1.129
7449	chr7	115849581	115872865	+	0	NA	intron (NM_015641, intron 1 of 6)	AT_rich|Low_complexity|Low_complexity	-1782	NM_152829	26136	Hs.592286	NM_015641	ENSG00000135269	TES	TESS|TESS-2	testin LIM domain protein	protein-coding	nan	0.789	1.157	0.593	0.555	0.290	0.105	3.487	0.157	0.385	0.376	0.493	0.970	5.588	0.249	1.279	1.355	1.861	3.250	0.181	0.220	0.177	0.072	2.254	2.314	0.290	0.444	0.695	1.009	0.502	0.378	0.610	1.166	0.574	0.803	0.150	0.265	0.986	0.883	0.197	0.350	0.049	0.229	0.105	0.493	0.051	0.336	0.231	0.064
6721	chr6	33912831	33927711	+	0	NA	Intergenic	Intergenic	47557	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275|mir-1275	microRNA 1275	ncRNA	nan	1.918	nan	0.365	0.930	0.538	0.446	0.113	0.065	0.105	0.117	1.522	0.581	0.044	0.111	1.055	0.823	0.270	nan	nan	1.123	0.708	0.203	1.362	1.590	0.466	0.787	3.483	4.038	1.418	1.297	1.533	1.504	1.211	1.220	0.635	1.174	0.851	0.578	4.464	3.316	0.378	0.447	0.446	1.522	0.344	0.096	1.163	0.682
6854	chr6	76768024	76774679	+	0	NA	intron (NM_001563, intron 1 of 16)	intron (NM_001563, intron 1 of 16)	11044	NM_001563	3617	Hs.590893	NM_001563	ENSG00000112706	IMPG1	GP147|IPM150|SPACR|VMD4	interphotoreceptor matrix proteoglycan 1	protein-coding	nan	nan	0.920	0.104	0.136	0.072	0.197	0.142	0.101		0.137	0.036	0.233	0.096	0.113	0.645	0.466	7.957	1.801	0.245	0.195	0.508	0.284	0.303	0.239	0.043	0.151	0.134	0.142	0.315	0.059	0.343	0.425	0.132	0.172	0.268	0.435	0.218	0.320	0.025	0.080	0.029	0.108	0.197	0.036	0.073	0.015	0.476	0.187
4391	chr2	66758934	66789978	+	0	NA	intron (NM_002398, intron 8 of 12)	intron (NM_002398, intron 8 of 12)	-26706	NR_110156	100507073	Hs.667940	NR_110156	ENSG00000232046	LINC01798	-	long intergenic non-protein coding RNA 1798	ncRNA	1.065	0.755	nan	0.150	3.422	1.668	1.196	0.216	0.103	0.448	0.308	0.570	0.895	0.063	0.118	0.412	0.330	0.518	0.625	0.440	0.596	nan	0.965	0.350	0.344	0.433	0.626	0.538	0.620	0.500	0.218	0.228	0.443	0.914	1.086	0.524	1.326	0.982	0.498	0.066	0.138	0.260	0.079	1.196	0.570	0.032	0.592	0.143	0.323
3519	chr17	70505307	70516288	+	0	NA	intron (NR_137281, intron 1 of 4)	MIRb|SINE|MIR	78146	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1	long intergenic non-protein coding RNA 673	ncRNA	1.676	0.956	0.816	0.919	9.213	4.575	1.037	0.250	0.108	0.692	0.354	1.656	4.136	0.079	0.110	1.331	1.728	1.347	2.221	0.937	1.087	1.486	0.462	0.430	0.445	nan	3.650	1.645	1.917	1.203	0.948	1.414	2.717	0.870	0.956	0.152	0.233	nan	0.819	1.999	1.236	0.259	0.603	1.037	1.656	0.913	0.221	1.559	0.011
846	chr1	211901536	211940180	+	0	NA	3' UTR (NM_001320808, exon 8 of 8)	3' UTR (NM_001320808, exon 8 of 8)	-71886	NM_001204182	4751	Hs.153704	NM_002497	ENSG00000117650	NEK2	HsPK21|NEK2A|NLK1|PPP1R111|RP67	NIMA related kinase 2	protein-coding	1.534	2.210	1.369	1.715	0.709	0.371	0.375	0.449	0.158	0.467	0.263	0.341	nan	0.064	0.122	0.727	1.114	3.268	6.121	1.197	1.259	nan	0.257	0.489	0.554	0.752	nan	2.861	2.521	0.779	0.541	0.249	0.313	1.179	1.627	1.658	4.785	1.021	0.760	1.015	0.525	0.160	0.115	0.375	0.341	0.375	0.236	0.144	1.328
7080	chr6	159063165	159096394	+	0	NA	intron (NM_001242395, intron 2 of 15)	AluSq2|SINE|Alu	-4656	NM_001318745	94120	Hs.436977	NM_001009991	ENSG00000164674	SYTL3	SLP3	synaptotagmin like 3	protein-coding	nan	2.088	2.606	1.282	0.611	0.324	0.774	0.743	0.198	0.589	0.317	1.593	5.998	0.415	0.118	1.210	1.182	0.928	1.302	1.699	nan	5.677	1.898	1.464	1.550	0.906	1.125	2.725	2.894	1.898	1.636	0.525	0.775	2.623	2.980	1.103	nan	1.820	0.928	3.294	4.101	0.767	0.733	0.774	1.593	0.385	2.403	0.300	0.423
7311	chr7	68144446	68156812	+	0	NA	Intergenic	Intergenic	665389	NR_120514	102723427	Hs.583491	NR_120514	ENSG00000225209	LOC102723427	-	uncharacterized LOC102723427	ncRNA	nan	nan	nan	0.051	3.793	2.076	0.773	0.079	0.234	0.910	0.688	3.010	2.401	0.087	0.124	0.645	0.866	0.671	1.095	1.258	1.179	7.380	1.329	0.176	0.281	0.154	0.200	2.315	2.151	0.416	0.201	0.218	0.387	1.395	1.465	0.487	1.075	2.538	1.323	0.990	1.329	0.385	0.186	0.773	3.010	0.196	0.107	0.072	0.140
3484	chr17	57822471	57941593	+	0	NA	intron (NM_030938, intron 7 of 11)	intron (NM_030938, intron 7 of 11)	-36595	NR_029493	406991	Hs.444569	NR_029493	ENSG00000062716	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA	1.167	1.972	0.995	0.705	2.830	1.401	0.573	1.974	0.523	1.227	0.670	1.540	2.184	12.268	0.512	1.587	1.448	5.212	10.682	0.588	0.703	1.657	0.626	nan	4.360	0.540	0.797	nan	nan	1.668	1.191	1.470	2.355	1.379	1.981	0.455	1.086	1.163	0.663	0.178	0.273	0.463	0.192	0.573	1.540	0.044	0.701	2.257	0.233
7636	chr8	31678135	31705855	+	0	NA	intron (NM_013962, intron 1 of 4)	AluJo|SINE|Alu	-191257	NR_104158	100856811	Hs.97362	NR_104156		NRG1-IT1	-	NRG1 intronic transcript 1	ncRNA	0.809	2.202	nan	0.168	0.232	0.110	0.303	0.073	0.075	0.308	0.160	0.048	2.899	0.145	0.120	0.439	0.430	0.247	0.594	0.401	0.530	0.112	0.070	0.189	0.184	0.540	0.807	1.150	0.914	1.494	1.153	0.164	0.349	1.218	2.586	0.530	1.225	1.255	0.916	0.362	0.286	0.366	0.069	0.303	0.048	0.145	0.376	0.239	0.321
1296	chr11	9804562	9850031	+	0	NA	intron (NM_030962, intron 32 of 39)	AluSc8|SINE|Alu	-33393	NR_120539	101928008	Hs.585524	NR_120539	ENSG00000255476	LOC101928008	-	uncharacterized LOC101928008	ncRNA	0.722	0.953	0.699	0.167	0.323	0.172	0.093	1.281	0.205	0.089	0.119	0.177	0.378	2.639	0.148	0.495	0.418	0.420	0.529	0.367	0.463	0.466	0.221	0.420	0.403	0.757	1.199	0.231	0.260	0.386	0.212	0.290	0.429	0.263	0.387	0.266	0.670	0.523	0.468	0.043	0.148	0.042	0.693	0.093	0.177	0.045	0.013	0.070	0.174
1553	chr11	82753018	82785178	+	0	NA	intron (NM_014488, intron 1 of 5)	intron (NM_014488, intron 1 of 5)	13406	NM_001286061	27314	Hs.40758	NM_014488	ENSG00000137502	RAB30	-	RAB30, member RAS oncogene family	protein-coding	1.238	1.486	1.144	1.788	0.773	0.482	0.542	1.226	0.155	2.043	0.852	0.756	2.171	0.539	0.139	1.232	1.014	1.106	1.638	1.419	1.139	5.990	2.580	2.976	3.221	1.458	1.944	4.103	4.573	1.471	1.287	0.775	1.001	3.837	5.791	1.057	1.811	2.352	1.222	0.721	0.659	1.224	0.244	0.542	0.756	0.115	1.255	0.173	0.449
6445	chr5	130964641	130974087	+	0	NA	intron (NM_001164390, intron 1 of 17)	AluSz|SINE|Alu	1565	NM_001164389	51735	Hs.483329	NM_016340	ENSG00000158987	RAPGEF6	KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2	Rap guanine nucleotide exchange factor 6	protein-coding	2.903	2.134	nan	1.707	2.821	1.663	1.111	1.932	0.144	1.144	0.681	1.920	4.118	2.614	0.113	2.514	3.108	3.894	5.312	3.188	3.023	3.441	1.848	8.257	8.867	3.304	3.912	2.758	4.171	4.733	4.711	1.658	3.029	5.009	7.729	2.540	3.288	1.557	0.744	0.906	1.630	1.280	1.099	1.111	1.920	0.298	1.591	1.102	1.060
2161	chr12	117513764	117563650	+	0	NA	intron (NR_120464, intron 2 of 2)	intron (NR_120464, intron 2 of 2)	1435	NR_120464	101928244	Hs.742266	NR_120464		TESC-AS1	-	TESC antisense RNA 1 (head to head)	ncRNA	nan	nan	1.530	0.372	0.790	0.459	0.505	0.127	0.100	0.176	0.148	0.436	2.382	0.143	0.135	0.629	0.875	0.195	0.277	nan	nan	nan	0.397	0.769	0.747	1.112	1.575	nan	nan	0.754	0.606	0.290	0.313	0.751	0.900	0.376	0.705	nan	1.423	5.682	3.494	0.153	0.253	0.505	0.436	0.451	0.470	0.078	0.097
7114	chr6	170746241	170774835	+	0	NA	Intergenic	Intergenic	101879	NM_002793	5689	Hs.352768	NM_002793	ENSG00000008018	PSMB1	HC5|PMSB1|PSC5	proteasome subunit beta 1	protein-coding	nan	1.182	nan	0.366	0.305	0.213	1.499	0.143	0.028	0.098	0.066	0.808	0.535	0.076	0.088	1.000	1.519	0.339	0.567	nan	1.240	nan	0.595	0.454	0.549	0.309	0.581	nan	3.352	1.097	0.857	1.123	1.298	0.378	0.460	0.819	1.837	0.612	0.501	2.033	0.655	0.100	0.691	1.499	0.808	0.350	0.513	1.080	0.505
1303	chr11	11299127	11304427	+	0	NA	intron (NM_198516, intron 10 of 10)	intron (NM_198516, intron 10 of 10)	73127	NM_001256686	283106	Hs.654675	NM_001256686	ENSG00000254598	CSNK2A3	CSNK2A1P	casein kinase 2 alpha 3	protein-coding	0.665	nan	1.720	2.382	2.220	1.254	0.251	0.111	0.084	1.965	0.985	10.178	0.747	0.040	0.069	nan	0.341	0.278	0.312	5.356	6.254	4.862	2.403	0.518	0.586	0.391	nan	4.801	2.901	0.316	0.248	0.232	0.391	1.481	2.124	0.185	0.285	1.410	nan	0.084	0.179	0.267	0.060	0.251	10.178	0.060	1.721	0.018	
5950	chr4	80365551	80390374	+	0	NA	Intergenic	Intergenic	-35785	NR_038826	100506035	Hs.507664	NR_038826	ENSG00000250334	LINC00989	-	long intergenic non-protein coding RNA 989	ncRNA	0.849	0.620	0.706	0.114	0.275	0.168	1.511	0.087	0.065	0.101	0.100	0.044	0.303	0.052	0.091	0.285	0.197	0.200	0.277	0.269	0.317	0.826	0.294	0.287	0.258	0.990	nan	0.359	0.360	0.488	0.136	0.099	0.144	2.325	2.489	0.292	nan	0.392	0.348	0.009	0.069	0.648	0.116	1.511	0.044	0.117	0.033	0.090	0.156
3494	chr17	61322661	61332193	+	0	NA	intron (NM_025185, intron 6 of 24)	intron (NM_025185, intron 6 of 24)	190145	NM_001330421	1534	Hs.355264	NM_001915	ENSG00000008283	CYB561	CYB561A1|FRRS2	cytochrome b561	protein-coding	1.162	nan	1.525	0.222	0.444	0.218	0.103	0.438	0.017	0.264	0.139	0.113	0.396	0.045	0.120	4.072	4.487	6.798	2.646	0.294	0.520	0.262	0.118	1.038	1.109	1.254	nan	0.890	0.905	0.678	0.268	0.616	1.258	0.092	0.098	0.455	0.920	1.197	0.960	0.076	0.122		0.107	0.103	0.113	0.040	0.236	0.467	0.246
7999	chr8	145114663	145120640	+	0	NA	Intergenic	Intergenic	-2045	NM_017570	26873	Hs.305882	NM_017570	ENSG00000178814	OPLAH	5-Opase|OPLA|OPLAHD	5-oxoprolinase (ATP-hydrolysing)	protein-coding	1.453	1.456	nan	1.741	1.219	0.632	1.283	0.640	0.215	0.238	0.065	2.164	1.088	1.221	0.065	0.785	0.986	0.190	0.405	nan	1.589	nan	0.398	1.567	1.458	0.508	0.780	1.374	1.882	0.721	0.697	1.384	1.202	0.515	0.395	1.310	2.209	0.898	0.525	0.205	1.441	0.032	0.121	1.283	2.164	1.004	5.144	0.368	0.827
7432	chr7	108081725	108103532	+	0	NA	intron (NM_005010, intron 1 of 27)	L1MA9|LINE|L1	4213	NM_001193584	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding	nan	1.534	1.793	1.738	1.856	0.966	0.961	0.219	0.123	0.846	0.560	2.459	2.153	0.162	0.159	0.624	0.674	0.696	0.680	3.411	2.674	3.214	1.157	2.401	2.393	1.329	1.899	1.939	2.540	1.342	1.657	0.954	1.995	2.307	2.961	0.765	nan	2.481	1.560	2.131	1.866	0.658	0.867	0.961	2.459	1.101	0.672	0.994	0.175
3510	chr17	65653518	65679394	+	0	NA	intron (NM_181671, intron 7 of 9)	intron (NM_181671, intron 7 of 9)	-47493	NM_001303272	25926	Hs.463936	NM_015462	ENSG00000130935	NOL11	-	nucleolar protein 11	protein-coding	1.427	nan	0.892	0.947	2.569	1.437	0.369	0.288	0.317	1.179	0.648	3.131	0.568	0.102	0.134	1.080	1.141	0.705	0.741	0.694	0.825	2.837	0.942	0.457	0.475	0.818	nan	2.004	1.923	1.024	0.701	0.930	1.257	0.424	0.428	0.317	0.804	1.422	0.712	0.183	1.702	0.033	0.232	0.369	3.131	0.215	0.065	0.950	0.177
15	chr1	1332879	1338235	+	0	NA	promoter-TSS (NM_001320155)	promoter-TSS (NM_001320155)	647	NR_015434	148413	Hs.741357	NR_015434	ENSG00000224870	LOC148413	-	uncharacterized LOC148413	ncRNA	4.274	nan	4.497	4.726	3.551	1.076	1.264	2.284	0.086	1.343	0.780	1.858	5.916	4.039	0.143	3.960	4.011	3.664	5.863	6.002	6.554	3.317	1.417	9.863	9.776	3.584	nan	11.073	13.984	nan	3.992	3.659	5.514	1.667	2.282	5.315	5.469	2.235	1.012	2.241	3.168	0.426	0.607	1.264	1.858	1.252	1.792	0.837	1.459
4624	chr2	179312871	179318221	+	0	NA	promoter-TSS (NM_001139517)	promoter-TSS (NM_001139517)	-62	NM_001139517	8575	Hs.570274	NM_003690	ENSG00000180228	PRKRA	DYT16|HSD14|PACT|RAX	protein activator of interferon induced protein kinase EIF2AK2	protein-coding	5.311	3.580	4.324	4.788	5.568	3.272	3.755	1.639	0.322	1.811	1.173	4.677	10.241	2.845	0.112	5.241	4.491	6.832	8.929	6.261	5.962	8.011	5.182	16.499	17.137	3.038	4.127	14.698	20.405	5.322	5.265	3.542	5.249	4.914	5.427	6.788	6.380	2.492	1.459	4.817	2.193	0.802	1.962	3.755	4.677	1.517	1.447	1.292	1.040
7255	chr7	36935932	36956607	+	0	NA	intron (NM_001206482, intron 16 of 21)	FRAM|SINE|Alu	12768	NR_031604	100302113		NR_031604	ENSG00000221325	MIR1200	MIRN1200|hsa-mir-1200	microRNA 1200	ncRNA	1.416	1.046	1.687	0.181	0.313	0.132	0.329	0.104	0.062	0.297	0.252	0.614	0.333	0.037	0.129	0.531	0.474	0.563	0.546	0.508	nan	0.965	0.319	0.565	0.551	0.529	nan	nan	nan	0.393	0.235	0.215	0.311	2.032	2.746	0.429	nan	1.398	0.854	0.011	0.107	0.666	0.108	0.329	0.614	0.047	1.104	0.123	0.685
2236	chr13	22632308	22641284	+	0	NA	Intergenic	Intergenic	-147628	NR_103810	100506622	Hs.255773	NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA	0.542	0.668	0.588	0.204	0.315	0.160	0.240	0.135	0.163	0.363	0.272	0.477	0.326	0.458	0.064	0.492	0.427	0.266	nan	0.385	0.556	0.079	0.020	0.108	0.115	0.298	0.472	0.315	0.239	0.447	0.144	0.291	0.592	0.779	0.522	0.234	0.152	5.428	2.430	0.851	0.133	0.287	0.106	0.240	0.477	0.022	0.079	0.223	0.014
1506	chr11	71747103	71755538	+	0	NA	intron (NM_006185, intron 2 of 26)	intron (NM_006185, intron 2 of 26)	25983	NR_104178	100128494	Hs.713607	NR_104178	ENSG00000251143	LOC100128494	-	uncharacterized LOC100128494	ncRNA	nan	2.659	2.792	3.594	6.752	3.540	4.168	2.668	0.268	2.798	1.414	5.120	11.128	2.681	0.140	3.554	4.602	3.771	5.825	12.118	12.476	4.534	1.902	4.741	5.095	5.431	6.108	5.897	8.492	3.473	2.812	3.049	4.636	4.326	5.061	1.632	3.675	3.762	1.944	9.949	4.244	1.538	1.670	4.168	5.120	1.920	3.176	2.772	0.830
7141	chr7	5567198	5573210	+	0	NA	promoter-TSS (NM_001101)	promoter-TSS (NM_001101)	28	NM_001101	60	Hs.520640	NM_001101	ENSG00000075624	ACTB	BRWS1|PS1TP5BP1	actin beta	protein-coding	8.638	4.140	6.761	5.068	6.205	2.980	6.354	3.111	0.549	2.641	1.837	10.360	nan	9.008	0.228	4.239	8.036	3.856	nan	9.641	11.812	nan	2.094	16.302	17.526	3.815	5.960	nan	6.529	5.024	4.965	4.418	10.571	4.659	3.349	3.199	6.788	2.033	1.075	7.132	4.403	2.006	4.544	6.354	10.360	2.490	5.465	1.709	3.438
4026	chr19	34840752	34858112	+	0	NA	Intergenic	Intergenic	-6213	NM_001184722	2821	Hs.466471	NM_000175	ENSG00000105220	GPI	AMF|GNPI|NLK|PGI|PHI|SA-36|SA36	glucose-6-phosphate isomerase	protein-coding	2.009	1.464	1.518	2.978	2.329	1.136	1.311	0.535	0.111	0.689	0.649	1.293	6.338	0.952	0.106	1.821	2.759	1.560	2.183	3.035	2.997	5.343	1.557	4.452	4.753	1.097	1.810	2.226	3.202	nan	3.233	1.574	2.842	1.230	1.554	1.604	2.521	2.531	1.291	1.556	1.863	0.296	0.656	1.311	1.293	0.481	1.368	1.072	1.338
7205	chr7	25761112	25775969	+	0	NA	Intergenic	L1ME4a|LINE|L1	221066	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA	2.152	1.026	1.296	0.172	0.211	0.196	0.250	0.926	0.129	0.115	0.125	0.169	0.608	0.059	0.136	1.168	1.047	2.171	nan	0.402	0.444	2.822	0.632	9.730	10.500	1.928	2.277	0.666	0.573	2.018	2.082	0.287	0.499	2.404	2.072	0.477	nan	0.697	0.569	0.115	1.526	0.742	0.055	0.250	0.169	1.148	0.095	0.216	0.157
6312	chr5	70736842	70754536	+	0	NA	Intergenic	Intergenic	-3106	NR_134269	102724392	Hs.625874	NR_134268		LOC102724392	-	uncharacterized LOC102724392	ncRNA	1.335	nan	1.089	0.545	0.957	0.454	0.682	0.362	0.092	2.174	1.552	0.535	1.555	0.618	0.153	0.625	0.721	1.000	1.318	1.173	1.078	nan	1.772	0.948	0.920	3.298	nan	1.020	1.466	2.155	2.003	0.489	0.812	9.173	8.255	0.858	0.967	3.185	1.931	0.178	0.669	2.369	0.340	0.682	0.535	0.110	1.739	0.316	0.237
6522	chr5	154906930	154926955	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	523627	NM_001099293	285643	Hs.567824	NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding	1.168	nan	1.163	0.153	0.363	0.224	0.184	0.079	0.088	0.133	0.057	0.143	0.339	0.049	0.156	0.202	0.129	0.286	0.627	0.327	0.338	0.371	0.118	0.089	0.086	0.512	0.733	0.367	0.323	0.675	0.399	0.099	0.151	2.188	2.863	0.390	1.291	0.546	0.462	0.136	0.088	0.939	0.039	0.184	0.143	0.248	0.032	0.054	0.822
859	chr1	214150343	214196901	+	0	NA	intron (NM_001270616, intron 2 of 4)	intron (NM_001270616, intron 2 of 4)	11778	NM_002763	5629	Hs.741808	NM_002763	ENSG00000117707	PROX1	-	prospero homeobox 1	protein-coding	1.841	2.253	3.283	4.769	1.920	0.992	0.619	0.124	0.072	3.027	1.627	4.896	nan	0.074	0.114	2.152	2.582	2.735	2.088	8.472	8.395	nan	1.885	4.645	4.919	2.891	nan	4.852	4.667	0.992	0.908	1.115	2.091	2.911	2.729	1.043	2.412	3.725	1.891	0.048	1.239	0.672	1.812	0.619	4.896	0.284	1.566	1.215	0.407
4284	chr2	31379467	31386479	+	0	NA	Intergenic	L2b|LINE|L2	-21381	NM_001253826	79623	Hs.468058	NM_024572	ENSG00000158089	GALNT14	GALNT15|GalNac-T10|GalNac-T14	polypeptide N-acetylgalactosaminyltransferase 14	protein-coding	0.873	nan	nan	0.062	0.327	0.273	0.074	0.064	0.079	0.044	0.094	0.026	0.440	0.016	0.139	4.252	3.456	5.662	1.447	0.228	0.213	0.142	0.138	18.848	18.962	0.197	0.309	0.353	0.299	nan	1.170	6.551	8.928	0.329	0.186	0.249	0.362	0.384	0.441	0.021	0.012	0.040	0.430	0.074	0.026	0.041	0.015	6.095	0.036
4507	chr2	135528328	135536866	+	0	NA	Intergenic	Intergenic	-56026	NM_030923	81615	Hs.369471	NM_030923	ENSG00000152128	TMEM163	DC29|SV31	transmembrane protein 163	protein-coding	nan	0.605	nan	0.595	0.484	0.243	3.359	0.070	0.112	0.200	0.111	0.123	0.662	0.020	0.053	0.361	0.333	0.313	0.341	0.472	0.434	8.557	2.390	0.174	0.150	0.138	0.354	0.466	nan	0.475	0.387	0.194	0.211	0.458	0.433	0.248	0.356	0.523	0.514	0.008	0.105	0.056	0.250	3.359	0.123	0.672	0.060	0.060	0.127
2890	chr15	58745364	58770741	+	0	NA	intron (NR_120338, intron 2 of 2)	intron (NR_120338, intron 2 of 2)	32882	NR_120338	101928694	Hs.655781	NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA	0.888	1.407	0.975	0.388	1.882	0.842	0.401	0.469	0.057	0.562	0.225	2.977	0.640	0.056	0.080	0.269	0.326	0.589	2.145	2.423	2.957	0.254	0.077	0.187	0.218	0.377	0.527	3.297	3.083	1.195	1.080	0.405	0.651	0.425	0.551	0.369	0.878	0.645	0.554	2.817	1.516	0.063	0.085	0.401	2.977	0.098	0.834	0.383	0.307
3967	chr19	11483638	11495831	+	0	NA	intron (NM_000121, intron 6 of 7)	AluJo|SINE|Alu	4351	NM_175871	126074	Hs.631619	NM_175871	ENSG00000173928	SWSAP1	C19orf39|SWS1AP1|ZSWIM7AP1	SWIM-type zinc finger 7 associated protein 1	protein-coding	2.172	2.091	2.042	2.170	2.170	1.233	1.777	0.671	0.215	1.029	0.402	1.492	2.311	1.975	0.128	1.631	2.009	1.496	2.162	3.700	3.444	6.999	2.211	1.617	1.826	1.818	2.598	4.241	5.418	3.109	2.357	0.734	1.154	1.797	1.856	1.055	2.036	2.506	1.256	2.463	2.124	0.274	0.560	1.777	1.492	0.450	1.798	0.470	0.366
135	chr1	22937563	22955230	+	0	NA	Intergenic	Intergenic	13463	NR_106742	102466615		NR_106742	ENSG00000276835	MIR6127	hsa-mir-6127	microRNA 6127	ncRNA	1.226	0.615	nan	0.747	0.297	0.181	0.257	0.045	0.100	0.936	0.378	0.118	1.067	0.057	0.096	0.722	1.096	0.159	0.145	1.142	1.060	0.880	0.280	0.240	0.215	0.336	0.558	1.984	2.173	5.824	4.507	0.517	0.547	0.666	0.544	1.881	3.172	1.320	0.748	0.072	1.466	0.173	0.090	0.257	0.118	1.839	2.468	0.123	0.284
3344	chr17	27618206	27622479	+	0	NA	intron (NM_020772, intron 1 of 3)	CpG	824	NM_020772	57532	Hs.462598	NM_020772	ENSG00000108256	NUFIP2	182-FIP|82-FIP|FIP-82|PIG1	NUFIP2, FMR1 interacting protein 2	protein-coding	nan	6.077	4.867	4.581	11.800	6.128	6.729	5.262	0.226	2.490	1.393	8.797	17.296	9.529	0.272	6.906	9.301	8.993	10.784	11.393	10.411	9.029	3.331	15.038	16.055	4.721	5.611	10.868	14.336	19.411	19.791	7.922	13.833	10.533	10.735	7.505	nan	4.583	2.641	5.872	7.835	3.098	5.756	6.729	8.797	1.507	3.262	5.347	4.742
4687	chr2	208173076	208185117	+	0	NA	Intergenic	Intergenic	-44948	NR_031633	100302130		NR_031633	ENSG00000221628	MIR1302-4	MIRN1302-4|hsa-mir-1302-4	microRNA 1302-4	ncRNA	1.161	nan	1.230	0.679	4.910	2.838	0.768	0.219	0.013	0.181	0.098	1.240	1.294	0.036	0.122	0.465	0.437	0.289	0.344	0.298	0.254	0.267	0.089	1.104	1.344	3.911	4.182	0.845	0.517	0.834	0.713	0.203	0.204	1.483	2.389	0.453	1.014	0.289	0.274	1.009	0.613	0.483	0.518	0.768	1.240	0.686	0.885	0.066	0.174
6489	chr5	143830048	143852935	+	0	NA	intron (NM_020768, intron 3 of 3)	L2c|LINE|L2	291054	NM_020768	57528	Hs.7093	NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding	nan	0.966	1.001	0.473	0.303	0.165	0.117	0.065	0.094	0.459	0.301	0.345	0.858	0.033	0.123	0.188	0.080	0.234	0.309	0.913	0.921	1.149	0.299	0.060	0.079	1.240	1.684	0.551	0.602	0.672	0.490	0.115	0.191	3.587	5.738	0.566	1.770	0.717	0.521	0.057	0.167	0.926	0.270	0.117	0.345	0.098	0.195	0.030	0.509
145	chr1	25090759	25130414	+	0	NA	intron (NM_013943, intron 1 of 5)	intron (NM_013943, intron 1 of 5)	38826	NM_013943	25932	Hs.440544	NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding	1.187	0.908	nan	0.203	0.314	0.201	0.305	0.625	0.199	0.179	0.194	0.085	0.400	0.102	0.135	0.312	0.225	0.312	0.592	0.523	0.616	0.280	0.147	0.396	0.369	0.903	1.204	0.490	0.549	0.438	0.216	0.232	0.305	0.067	0.106	1.021	3.335	0.530	0.454	0.093	0.144	0.030	0.102	0.305	0.085	0.049	0.069	0.058	1.152
2674	chr14	75099632	75109559	+	0	NA	Intergenic	MIRb|SINE|MIR	-25561	NM_000428	4053	Hs.512776	NM_000428	ENSG00000119681	LTBP2	C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3	latent transforming growth factor beta binding protein 2	protein-coding	2.205	1.155	1.728	0.891	0.245	0.083	0.728	0.165	0.097	0.118	0.135	0.158	0.571	0.064	0.096	0.401	0.287	0.166	0.279	0.528	0.631	1.154	0.286	0.630	0.682	0.292	0.681	1.901	nan	6.253	6.056	0.217	0.261	0.757	0.627	1.675	6.381	1.681	nan	0.381	0.407	0.231	0.086	0.728	0.158	1.134	0.052	0.010	8.638
1131	chr10	71075858	71110277	+	0	NA	intron (NM_001322367, intron 1 of 16)	intron (NM_001322367, intron 1 of 16)	14464	NM_000188	3098	Hs.370365	NM_000188	ENSG00000156515	HK1	HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|hexokinase	hexokinase 1	protein-coding	1.628	nan	2.310	0.779	1.229	0.625	0.418	0.358	0.152	0.449	0.313	2.108	2.376	0.192	0.072	0.542	0.809	0.826	1.782	0.865	0.914	1.625	0.414	0.365	0.388	0.975	1.316	3.666	nan	0.532	0.464	0.579	0.988	0.951	0.941	0.429	nan	1.335	0.653	1.371	0.795	0.214	1.198	0.418	2.108	0.581	0.582	0.610	0.408
1876	chr12	26122563	26143416	+	0	NA	intron (NM_001164747, intron 1 of 5)	intron (NM_001164747, intron 1 of 5)	6301	NM_001164747	11228	Hs.696433	NM_007211	ENSG00000123094	RASSF8	C12orf2|HOJ1	Ras association domain family member 8	protein-coding	nan	nan	nan	0.272	0.158	0.094	0.098	0.144	0.054	0.136	0.141	0.074	0.483	0.078	0.111	0.284	0.342	0.236	0.522	0.246	0.346	0.149	0.094	0.421	0.465	0.254	0.388	0.448	0.476	0.740	0.471	0.124	0.283	0.047	0.087	1.768	4.755	0.182	0.253	0.021	0.085	0.045	0.053	0.098	0.074	0.060	0.084	0.047	2.415
1759	chr12	1637586	1650558	+	0	NA	Intergenic	Intergenic	34415	NR_028415	100292680	Hs.391695	NR_028415		LINC00942	-	long intergenic non-protein coding RNA 942	ncRNA	1.035	nan	nan	0.397	0.427	0.170	0.462	0.553	0.301	0.158	0.122	0.359	1.015	0.468	0.094	0.126	0.270	0.410	0.545	nan	0.752	0.831	0.283	2.245	2.353	0.897	1.231	0.321	0.481	0.410	0.362	4.137	8.797	0.207	0.242	0.128	nan	0.317	0.339	0.039	0.075	0.037	0.295	0.462	0.359	0.173	0.078	3.868	0.075
7916	chr8	125615546	125662011	+	0	NA	intron (NM_014751, intron 3 of 13)	intron (NM_014751, intron 3 of 13)	87435	NM_001278645	4715	Hs.15977	NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding	nan	nan	nan	0.457	0.681	0.425	0.372	0.148	0.131	0.184	0.115	0.751	nan	0.070	0.076	0.637	0.771	0.344	0.407	0.900	0.951	1.876	0.740	nan	nan	1.011	1.450	0.917	0.955	2.430	2.212	0.442	0.722	0.189	0.314	1.546	4.889	0.914	0.718	0.210	0.261	0.047	0.180	0.372	0.751	0.509	0.312	0.198	1.864
8208	chr9	95945592	95971805	+	0	NA	intron (NM_001282394, intron 1 of 29)	MLT1L|LTR|ERVL-MaLR	11486	NM_001282394	65268	Hs.654856	NM_006648	ENSG00000165238	WNK2	NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43	WNK lysine deficient protein kinase 2	protein-coding	1.178	nan	1.353	1.701	0.856	0.434	0.660	0.091	0.075	0.407	0.279	2.117	1.631	0.160	0.063	2.065	3.143	0.592	nan	2.125	2.426	1.437	0.415	0.383	0.452	0.833	1.121	1.393	2.071	1.749	2.905	0.846	1.354	0.702	0.595	0.647	0.699	1.175	0.835	0.886	1.682	0.102	0.591	0.660	2.117	0.343	0.119	0.526	0.404
6952	chr6	126049464	126074767	+	0	NA	Intergenic	Intergenic	-8617	NM_012259	23493	Hs.144287	NM_012259	ENSG00000135547	HEY2	CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32	hes related family bHLH transcription factor with YRPW motif 2	protein-coding	1.425	1.422	1.265	0.936	0.342	0.164	0.637	1.775	0.152	0.217	0.122	0.360	2.097	0.167	0.113	0.348	0.197	0.313	0.641	0.681	0.583	3.684	1.285	0.476	0.536	0.523	0.794	0.909	0.948	7.520	8.162	0.100	0.146	6.402	6.842	1.021	1.666	0.773	0.472	0.288	0.182	1.909	0.025	0.637	0.360	0.658	0.597	0.043	1.373
8183	chr9	86982028	86995058	+	0	NA	Intergenic	Intergenic	-5130	NM_022127	64078	Hs.535966	NM_022127	ENSG00000197506	SLC28A3	CNT3	solute carrier family 28 member 3	protein-coding	0.746	0.852	0.833	0.141	0.231	0.147	0.550	0.184	0.086	0.144	0.125	0.083	0.311	0.050	0.083	0.189	0.136	0.294	0.336	0.272	0.413	0.095	0.074	0.148	0.167	0.078	0.159	0.309	0.274	0.419	0.180	0.079	0.127	0.118	0.130	1.551	7.093	0.448	0.436	0.026	0.041	0.015	0.030	0.550	0.083	0.015	0.016	0.030	2.014
7315	chr7	70031554	70062213	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-550640	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding	nan	1.408	1.003	0.060	0.398	0.176	2.895	0.566	0.257	0.368	0.251	0.343	1.699	0.085	0.136	0.367	0.366	0.349	nan	0.804	0.991	1.240	0.320	0.104	0.129	1.108	nan	0.247	nan	1.357	1.477	0.218	0.425	1.408	1.529	0.518	0.791	1.167	0.807	0.080	0.351	0.645	2.106	2.895	0.343	0.576	0.053	0.145	0.113
4605	chr2	175862687	175871491	+	0	NA	intron (NR_038133, intron 1 of 11)	intron (NR_038133, intron 1 of 11)	2892	NM_001822	1123	Hs.380138	NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding	3.395	1.990	2.567	2.104	1.565	0.752	2.456	1.113	0.394	0.767	0.682	1.764	3.603	1.232	0.082	2.749	3.023	1.238	1.608	2.419	1.877	2.430	0.797	2.688	2.513	2.497	3.082	5.735	9.994	2.095	1.896	1.486	3.182	2.342	2.165	4.191	4.073	1.250	0.758	2.654	1.234	0.637	1.508	2.456	1.764	0.938	0.688	0.839	1.426
6430	chr5	123460046	123473844	+	0	NA	intron (NR_125774, intron 4 of 5)	intron (NR_125774, intron 4 of 5)	307268	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA	nan	1.191	1.557	0.479	3.275	1.516	0.445	0.346	0.024	1.040	0.413	0.517	0.641	0.146	0.163	0.363	0.336	2.330	nan	1.322	1.091	7.307	2.152	0.215	0.195	0.524	0.899	1.287	1.380	2.072	2.202	0.249	0.379	3.118	3.223	1.448	2.688	1.775	0.879	0.413	0.491	0.615	0.699	0.445	0.517	0.472	0.584	0.130	0.864
3026	chr16	2279321	2286869	+	0	NA	exon (NM_004424, exon 7 of 14)	exon (NM_004424, exon 7 of 14)	-3373	NM_001374	1775	Hs.103503	NM_001374	ENSG00000167968	DNASE1L2	DNAS1L2	deoxyribonuclease 1 like 2	protein-coding	0.761	nan	2.625	4.341	0.405	0.148	0.207	0.049	0.085	0.186	0.139	0.205	0.734	0.191	0.082	0.306	0.310	0.200	0.351	1.324	1.392	nan	0.266	0.403	0.318	0.210	nan	1.431	1.630	0.351	0.324	0.201	0.211	0.271	0.282	0.256	0.358	0.738	0.567	2.310	8.193	0.063	0.314	0.207	0.205	0.064	0.202	0.013	0.050
1528	chr11	75857357	75875035	+	0	NA	Intergenic	AluSz|SINE|Alu	51378	NM_004626	7481	Hs.108219	NM_004626	ENSG00000085741	WNT11	HWNT11	Wnt family member 11	protein-coding	nan	1.264	1.126	2.312	0.705	0.346	0.210	0.239	0.100	3.114	0.973	2.699	1.567	0.111	0.076	0.601	0.605	0.351	0.682	1.807	2.136	2.624	0.913	0.953	1.072	0.752	1.291	2.256	3.908	0.761	0.789	0.567	0.464	1.769	2.307	0.431	1.005	4.223	1.834	0.878	0.558	0.964	0.059	0.210	2.699	0.163	0.648	0.091	0.159
6919	chr6	118649490	118659258	+	0	NA	Intergenic	Intergenic	-168162	NR_002730	23629	Hs.648050	NR_002730		BRD7P3	BP75	bromodomain containing 7 pseudogene 3	pseudo	nan	1.108	nan	0.826	0.227	0.082	0.509	0.084	0.065	0.241	0.185	0.135	3.513	0.044	0.170	0.457	0.247	0.120	0.183	1.206	nan	nan	0.151	0.360	0.293	0.335	nan	3.089	2.142	0.517	0.316	0.150	0.183	0.248	0.309	0.123	nan	1.107	0.512	5.583	1.354	0.059	0.041	0.509	0.135	0.030	0.353	0.021	0.038
7615	chr8	21553694	21569848	+	0	NA	intron (NM_001495, intron 6 of 8)	intron (NM_001495, intron 6 of 8)	84575	NM_001495	2675	Hs.441202	NM_001495	ENSG00000168546	GFRA2	GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2	GDNF family receptor alpha 2	protein-coding	nan	1.236	nan	0.043	0.211	0.099	0.126	0.094	0.040	0.051	0.087	0.059	0.124	0.061	0.082	1.067	1.434	0.102	0.164	nan	0.524	nan	0.083	0.192	0.222	0.109	0.253	0.183	0.262	1.211	1.128	0.777	0.797	0.129	0.175	0.189	0.238	nan	nan	0.083	0.152	0.029	0.044	0.126	0.059	0.102	0.038	0.533	0.033
6456	chr5	135144956	135171713	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-12031	NM_145282	153328	Hs.412418	NM_145282	ENSG00000145832	SLC25A48	-	solute carrier family 25 member 48	protein-coding	0.743	2.106	nan	0.635	1.256	0.780	0.291	0.089	0.030	0.147	0.139	0.417	1.753	0.052	0.085	0.508	0.459	0.255	0.346	1.008	0.795	4.927	1.285	0.337	0.358	0.141	0.307	1.176	1.371	0.706	0.567	0.172	0.197	0.812	1.376	0.160	0.228	0.943	0.694	0.092	0.220	0.102	0.208	0.291	0.417	0.062	0.010	0.052	0.032
3064	chr16	15680916	15696180	+	0	NA	3' UTR (NM_001184998, exon 27 of 27)	3' UTR (NM_001184998, exon 27 of 27)	16404	NR_106761	102465252		NR_106761	ENSG00000166783	MIR6506	hsa-mir-6506	microRNA 6506	ncRNA	0.659	1.235	nan	1.680	1.108	0.566	1.720	0.701	0.138	0.399	0.145	0.611	2.040	0.042	0.064	0.377	0.400	0.363	0.431	0.385	0.463	1.173	0.409	0.483	0.535	0.334	0.517	5.201	6.346	nan	0.254	0.254	0.316	0.162	0.420	0.162	0.463	0.947	0.530	0.280	0.122	0.044	0.047	1.720	0.611	0.051	0.888	0.032	0.128
509	chr1	147987418	148001630	+	0	NA	TTS (NR_104086)	TTS (NR_104086)	378	NR_104086	101954277		NR_104086	ENSG00000275538	RNVU1-19	RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19	RNA, variant U1 small nuclear 19	snRNA	1.836	nan	1.475	2.027	0.387	0.226	1.112	0.237	0.124	1.186	0.867	1.426	6.782	1.773	0.182	1.358	1.824	0.654	0.801	1.821	1.862	1.697	0.831	4.307	4.538	0.844	1.117	4.240	5.014	1.302	1.569	4.696	6.556	1.788	1.402	2.490	4.462	0.569	0.505	0.800	1.982	0.449	0.220	1.112	1.426	0.267	2.347	2.670	0.949
3708	chr18	28818741	28826436	+	0	NA	Intergenic	Intergenic	-75464	NM_001942	1828	Hs.2633	NM_001942	ENSG00000134760	DSG1	CDHF4|DG1|DSG|EPKHE|EPKHIA|PPKS1|SPPK1	desmoglein 1	protein-coding	0.582	1.657	0.810	0.136	0.172	0.062	0.166	0.068	0.021	0.061	0.097	0.031	2.362	0.098	0.080	0.578	0.475	6.560	11.934	0.421	0.565	0.164	0.108	0.111	0.224	0.139	0.193	0.752	0.809	0.316	0.150	0.414	0.610	0.082	0.150	0.175	0.232	0.830	0.860		0.290	0.013	0.031	0.166	0.031	0.025	0.119	0.397	0.192
1015	chr10	10943894	10968009	+	0	NA	intron (NM_001326323, intron 3 of 17)	intron (NM_001326323, intron 3 of 17)	38175	NR_024410	254312	Hs.498620	NR_015413	ENSG00000229240	LINC00710	-	long intergenic non-protein coding RNA 710	ncRNA	nan	0.559	0.546	0.054	0.182	0.133	0.165	0.199	0.120	0.059	0.092	0.065	0.224	3.862	0.216	0.440	0.381	0.274	0.369	0.257	0.267	0.282	0.144	0.103	0.123	0.252	0.418	0.098	0.131	0.179	0.067	0.141	0.143	0.037	0.050	0.114	0.181	0.099	0.186	0.022	0.063	0.023	0.062	0.165	0.065	0.020	0.021	0.025	0.056
7450	chr7	115891352	115920382	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	20851	NR_130921	102724434	Hs.667624	NR_130921	ENSG00000237870	LOC102724434	-	uncharacterized LOC102724434	ncRNA	nan	0.553	0.615	0.085	0.204	0.116	0.079	0.650	0.116	0.086	0.138	0.129	0.220	7.935	0.267	0.481	0.336	0.264	0.388	0.159	0.240	0.116	0.109	0.303	0.297	0.495	0.746	0.250	0.218	0.433	0.147	0.243	0.334	0.100	0.101	0.152	0.238	0.601	0.618	0.037	0.172	0.033	0.027	0.079	0.129	0.040	0.042	0.123	0.025
976	chr1	246308987	246331309	+	0	NA	intron (NM_001167740, intron 5 of 11)	intron (NM_001167740, intron 5 of 11)	260566	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding	nan	1.267	nan	1.624	1.042	0.709	0.327	0.250	0.068	0.630	0.525	1.311	4.885	0.045	0.082	0.605	0.783	1.438	1.780	2.781	2.671	1.592	0.453	0.590	0.633	0.750	1.007	2.867	3.060	0.299	0.148	0.397	0.759	1.317	1.333	0.538	1.266	0.882	0.651	2.941	0.683	0.252	0.126	0.327	1.311	0.391	1.026	0.671	0.299
8147	chr9	67789668	67795058	+	0	NA	TTS (NR_027422)	TTS (NR_027422)	1826	NR_027422	100133121	Hs.744835	NR_027422		FAM27B	FAM27A2	family with sequence similarity 27 member B	ncRNA	2.980	5.088	3.891	1.369	3.574	1.934	6.788	0.497	0.182	2.151	1.331	4.005	5.897	1.913	0.076	3.790	6.215	3.790	5.145	7.355	6.477	4.728	1.713	16.469	15.525	6.135	8.047	2.078	2.842	7.090	6.980	2.761	6.877	10.724	7.462	3.522	3.898	2.428	1.540	2.268	3.369	4.000	2.468	6.788	4.005	2.369	3.299	3.722	1.562
6910	chr6	112180987	112196062	+	0	NA	intron (NM_002037, intron 1 of 13)	AluSq2|SINE|Alu	6131	NM_002037	2534	Hs.390567	NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding	nan	1.701	nan	1.942	1.850	0.811	3.547	1.011	0.109	0.696	0.314	2.606	4.235	0.224	0.123	1.215	1.784	1.233	1.929	5.335	nan	nan	1.107	0.838	0.799	0.905	nan	0.725	0.774	2.635	2.984	0.604	1.333	1.325	1.354	0.584	nan	1.223	0.714	1.085	1.388	0.309	1.173	3.547	2.606	0.905	0.802	0.435	0.452
6174	chr5	11441349	11454548	+	0	NA	intron (NR_109988, intron 3 of 21)	LTR78|LTR|ERV1	141081	NM_001288715	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding	nan	nan	nan	0.100	0.152	0.134	0.029	0.175	0.133	0.130	0.297	0.081	nan	0.033	0.126	0.391	0.170	0.230	0.319	0.239	0.346	0.087	0.100	0.097	0.109	nan	4.197	0.215	0.204	0.738	0.333	0.174	0.272	0.089	0.107	0.186	nan	0.365	0.461	0.008	0.081	0.021	0.030	0.029	0.081	0.067	0.030	0.030	0.038
3589	chr17	77016049	77033281	+	0	NA	promoter-TSS (NR_040019)	promoter-TSS (NR_040019)	-928	NR_040019	100507410	Hs.666723	NR_040018	ENSG00000265096	C1QTNF1-AS1	-	C1QTNF1 antisense RNA 1	ncRNA	1.380	2.750	1.625	0.321	0.961	0.388	0.960	2.364	0.395	0.543	0.213	0.166	2.129	0.126	0.091	0.740	0.874	0.401	1.244	0.942	0.870	3.025	0.852	0.305	0.280	nan	0.860	0.506	0.730	1.817	1.650	0.282	0.387	1.051	1.091	0.229	0.469	nan	0.866	0.897	3.872	0.216	0.046	0.960	0.166	0.209	0.817	0.114	0.087
2265	chr13	34565319	34576239	+	0	NA	Intergenic	AluJo|SINE|Alu	178573	NM_181558	5983	Hs.115474	NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C subunit 3	protein-coding	0.731	1.037	0.704	0.169	0.122	0.161	0.104	0.157	0.074	1.522	0.536	0.856	0.820	0.020	0.042	2.922	1.855	2.613	1.168	0.818	1.078	6.574	4.663	0.169	0.218	0.549	0.556	1.392	1.458	0.409	0.229	0.691	1.219	0.471	0.319	0.379	0.454	1.060	0.695	0.408	0.204	0.070	0.044	0.104	0.856	0.045	0.559	0.340	0.091
2129	chr12	107366692	107373783	+	0	NA	TTS (NM_025198)	TTS (NM_025198)	10707	NM_025198	80298	Hs.5009	NM_025198	ENSG00000120832	MTERF2	MTERFD3|mTERFL	mitochondrial transcription termination factor 2	protein-coding	1.173	0.855	nan	0.535	0.355	0.277	0.322	1.024	0.182	0.312	0.137	0.202	0.599	0.123	0.122	0.375	0.264	0.422	0.734	0.472	0.683	1.530	0.578	0.446	0.386	1.974	2.919	2.120	2.049	0.512	0.215	0.167	0.321	4.880	7.582	0.397	0.626	1.447	0.896	0.101	0.122	1.612	0.101	0.322	0.202	0.054	1.351	0.122	0.122
723	chr1	185342979	185347703	+	0	NA	Intergenic	L2a|LINE|L2	-41170	NR_038424	100288079	Hs.131220	NR_038424	ENSG00000261024	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo	nan	nan	1.019	0.528	0.464	0.408	0.699	0.213	0.101	0.234	0.229	0.514	0.576	0.366	0.077	2.682	4.886	0.913	1.783	0.955	nan	1.370	0.402	nan	4.325	0.413	0.831	1.379	1.274	0.609	0.418	11.374	7.848	0.064	0.083	0.308	nan	0.909	0.879	0.105	0.505		0.219	0.699	0.514	0.080	0.087	3.857	0.123
3597	chr17	78074403	78084926	+	0	NA	exon (NM_000152, exon 3 of 20)	exon (NM_000152, exon 3 of 20)	4339	NM_001079803	2548	Hs.1437	NM_000152	ENSG00000171298	GAA	LYAG	glucosidase alpha, acid	protein-coding	2.723	3.167	2.584	1.461	1.895	0.853	2.034	0.884	0.184	0.820	0.462	1.598	8.638	1.054	0.089	2.980	4.167	1.191	1.843	2.857	2.726	3.453	1.141	2.623	2.357	nan	2.225	2.889	4.614	4.537	4.997	0.873	1.672	2.374	2.063	2.756	2.784	nan	0.863	2.088	2.634	0.437	1.397	2.034	1.598	1.278	2.303	0.289	0.703
6941	chr6	124205559	124237594	+	0	NA	intron (NM_153355, intron 1 of 5)	AluSc|SINE|Alu	96585	NM_001040214	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding	0.760	0.816	0.844	0.454	2.434	1.160	0.136	0.109	0.071	0.509	0.323	0.566	0.679	0.034	0.129	0.426	0.314	0.320	0.333	0.590	0.683	6.988	2.317	0.849	0.917	0.367	0.469	1.654	1.213	0.411	0.144	0.116	0.209	1.251	2.126	0.165	0.219	0.787	0.491	1.349	2.791	0.253	0.044	0.136	0.566	0.024	0.598	0.043	0.047
1040	chr10	14509199	14552136	+	0	NA	Intergenic	AluSq|SINE|Alu	44042	NM_001320741	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding	nan	0.866	0.563	0.638	0.623	0.380	0.081	1.032	0.128	0.289	0.324	2.137	0.380	0.051	0.090	0.594	0.493	0.476	0.503	0.745	0.871	3.981	1.180	0.196	0.191	0.539	0.806	0.861	1.091	0.194	0.098	0.147	0.238	0.920	0.805	0.187	0.258	1.314	0.679	0.031	0.161	0.208	0.058	0.081	2.137	0.023	0.167	0.073	0.066
8232	chr9	109622069	109633749	+	0	NA	intron (NM_021224, intron 1 of 12)	intron (NM_021224, intron 1 of 12)	2531	NM_021224	58499	Hs.370379	NM_021224	ENSG00000148143	ZNF462	Zfp462	zinc finger protein 462	protein-coding	3.437	2.028	2.084	2.864	2.490	1.497	2.913	2.279	0.192	1.502	0.909	2.838	8.605	0.796	0.058	0.225	0.225	1.928	3.685	8.470	6.886	1.731	0.529	0.687	0.677	2.052	2.866	2.552	nan	7.121	8.380	1.016	2.210	2.995	2.438	3.017	4.122	nan	1.454	1.616	1.793	1.079	1.120	2.913	2.838	1.675	0.968	0.763	1.523
5766	chr3	189465227	189483959	+	0	NA	intron (NM_001329964, intron 3 of 13)	intron (NM_001329964, intron 3 of 13)	-32856	NM_001114980	8626	Hs.137569	NM_003722	ENSG00000073282	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding	1.053	1.250	0.812	0.119	0.418	0.315	0.233	0.179	0.163	0.200	0.203	0.083	0.605	0.029	0.073	0.275	0.127	0.221	0.594	0.320	0.391	4.428	1.291	0.317	0.261	0.189	0.310	0.399	0.466	0.585	0.263	0.094	0.141	0.605	0.536	0.286	0.648	0.647	0.469	0.051	0.056	0.125	0.106	0.233	0.083	0.031	0.027	0.021	0.151
2182	chr12	122005772	122021335	+	0	NA	intron (NM_032590, intron 3 of 22)	intron (NM_032590, intron 3 of 22)	4811	NM_001005366	84678	Hs.524800	NM_032590	ENSG00000089094	KDM2B	CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2	lysine demethylase 2B	protein-coding	1.750	1.371	1.456	0.926	2.774	1.351	1.278	0.785	0.105	0.671	0.455	1.275	2.322	1.713	0.108	0.915	1.610	2.353	2.625	4.221	3.422	nan	0.638	1.604	1.796	1.752	2.369	2.085	3.537	1.560	1.410	1.475	2.255	1.144	0.970	1.029	1.821	2.432	1.409	3.971	9.140	0.296	0.561	1.278	1.275	0.571	0.996	1.108	0.542
6328	chr5	73268951	73298410	+	0	NA	Intergenic	Intergenic	174337	NM_001244364	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding	1.361	nan	1.017	0.116	0.457	0.326	0.300	0.092	0.148	0.175	0.120	0.204	0.457	1.492	0.162	0.222	0.144	0.304	0.525	0.347	0.371	nan	1.117	0.119	0.142	2.705	nan	0.276	0.287	0.880	0.730	0.067	0.134	1.001	0.774	1.024	4.343	0.534	0.438	0.437	0.100	0.145	0.166	0.300	0.204	0.317	0.049	0.013	2.381
5988	chr4	106628483	106637399	+	0	NA	intron (NM_001031720, intron 1 of 11)	MIR|SINE|MIR	971	NM_001031720	79807	Hs.161429	NM_024751	ENSG00000138780	GSTCD	-	glutathione S-transferase C-terminal domain containing	protein-coding	2.023	nan	nan	1.701	1.783	1.121	1.066	1.031	0.089	0.562	0.390	1.623	2.199	0.865	0.120	2.359	2.587	7.346	nan	1.586	1.688	1.355	0.691	2.769	3.340	1.436	nan	1.451	2.608	2.310	2.195	1.151	1.981	1.410	1.490	2.456	nan	1.762	0.986	0.095	0.499	0.160	0.501	1.066	1.623	0.096	0.297	0.419	0.448
152	chr1	26605250	26634601	+	0	NA	intron (NM_001077262, intron 4 of 10)	intron (NM_001077262, intron 4 of 10)	13270	NM_183008	91544	Hs.145061	NM_145345	ENSG00000158062	UBXN11	COA-1|PP2243|SOC|SOCI|UBXD5	UBX domain protein 11	protein-coding	2.071	1.286	nan	1.185	0.705	0.457	0.838	0.237	0.116	0.235	0.144	0.276	2.049	0.593	0.086	0.675	1.043	0.815	1.634	2.007	2.075	1.104	0.453	0.894	0.948	1.434	2.188	1.703	2.319	1.651	1.935	0.658	0.802	0.445	0.443	1.551	2.209	0.900	0.585	4.500	0.873	0.085	1.363	0.838	0.276	0.790	0.311	0.169	0.576
2931	chr15	69269614	69294357	+	0	NA	intron (NR_033671, intron 2 of 16)	intron (NR_033671, intron 2 of 16)	-25049	NM_024505	79400	Hs.657932	NM_024505	ENSG00000255346	NOX5	-	NADPH oxidase 5	protein-coding	1.995	0.801	nan	0.110	0.280	0.188	0.337	0.088	0.065	0.096	0.165	0.295	0.394	0.039	0.094	0.565	0.640	0.234	0.312	0.852	0.898	nan	0.168	0.153	0.183	0.587	0.934	0.203	0.296	10.341	9.515	0.228	0.289	0.477	0.742	1.335	4.225	0.306	0.385	0.031	0.148	0.092	0.467	0.337	0.295	2.937	0.041	0.080	4.170
862	chr1	214453404	214459772	+	0	NA	intron (NM_020197, intron 1 of 11)	intron (NM_020197, intron 1 of 11)	2023	NM_020197	56950	Hs.66170	NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding	4.699	4.647	5.479	3.957	4.336	2.362	3.418	3.916	0.580	4.569	2.989	4.713	nan	2.757	0.130	4.310	5.425	5.695	8.037	7.072	5.963	nan	2.250	6.721	6.835	3.728	nan	3.991	6.188	3.652	4.440	1.332	2.102	7.566	7.306	5.205	4.545	4.160	1.750	1.796	1.868	1.792	1.521	3.418	4.713	0.716	2.660	0.515	1.725
1419	chr11	48109139	48132435	+	0	NA	intron (NM_002843, intron 1 of 24)	MER58B|DNA|hAT-Charlie	2453	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA	nan	3.068	1.038	0.080	0.733	0.372	3.693	0.426	0.112	0.480	0.318	0.678	2.164	0.131	0.134	1.249	1.359	1.942	4.604	1.524	1.398	1.040	0.376	1.817	1.872	0.698	1.223	1.833	2.085	0.761	0.410	1.842	2.951	0.905	0.922	0.422	nan	1.568	0.923	2.197	1.159	0.139	0.460	3.693	0.678	0.259	0.122	2.050	0.333
341	chr1	62636579	62662960	+	0	NA	Intergenic	LTR8|LTR|ERV1	-10705	NM_001164835	54596	Hs.685462	NM_019079	ENSG00000240563	L1TD1	ECAT11	LINE1 type transposase domain containing 1	protein-coding	1.646	0.788	nan	0.200	0.426	0.231	0.214	0.097	0.172	0.059	0.159	1.157	0.650	0.122	0.118	0.287	0.223	0.269	0.411	4.523	4.046	0.682	0.225	0.337	0.374	nan	nan	0.448	nan	4.011	3.284	0.183	0.287	0.345	0.329	1.497	3.752	0.520	0.499	0.051	0.084	0.140	2.042	0.214	1.157	1.173	0.085	0.094	1.682
6232	chr5	34912840	34918249	+	0	NA	promoter-TSS (NM_018321)	promoter-TSS (NM_018321)	187	NR_026591	5810	Hs.38114	NM_002853	ENSG00000113456	RAD1	HRAD1|REC1	RAD1 checkpoint DNA exonuclease	protein-coding	3.372	3.610	6.060	9.244	3.272	1.273	2.720	4.511	0.576	2.889	1.921	4.585	7.117	2.948	0.158	5.111	4.480	5.279	7.631	5.727	5.271	5.225	2.148	8.198	8.800	7.980	9.827	7.336	9.252	8.227	8.712	4.859	8.818	4.077	4.714	3.617	3.807	4.156	2.253	1.004	1.639	0.477	0.938	2.720	4.585	1.275	3.223	2.222	1.156
3586	chr17	76773535	76788866	+	0	NA	Intergenic	AluSx|SINE|Alu	-2776	NM_004762	9267	Hs.191215	NM_004762	ENSG00000108669	CYTH1	B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7	cytohesin 1	protein-coding	2.639	1.825	2.643	1.142	1.510	0.696	0.849	1.550	0.650	0.604	0.464	1.807	3.531	0.919	0.099	1.395	1.641	1.432	1.846	1.838	1.547	1.718	0.534	1.624	1.542	nan	2.203	1.650	2.631	5.069	4.042	0.610	1.068	0.652	0.794	2.368	6.694	nan	0.854	0.621	1.186	0.118	0.459	0.849	1.807	0.265	1.072	0.238	2.841
2189	chr12	123318670	123384667	+	0	NA	exon (NM_024667, exon 4 of 4)	exon (NM_024667, exon 4 of 4)	29044	NM_024667	79720	Hs.507162	NM_024667	ENSG00000139722	VPS37B	-	VPS37B, ESCRT-I subunit	protein-coding	1.305	1.419	1.369	0.644	0.615	0.292	1.054	0.270	0.117	0.613	0.320	0.795	1.839	0.343	0.117	2.215	2.723	1.709	3.008	1.358	1.322	nan	0.539	1.557	1.608	0.919	1.348	2.850	3.582	1.015	0.795	1.046	1.630	1.091	1.223	0.966	2.006	1.149	0.829	0.912	1.623	0.204	0.368	1.054	0.795	0.312	0.821	0.724	0.684
2287	chr13	42966706	42989100	+	0	NA	Intergenic	MIRb|SINE|MIR	-21125	NR_135319	105370177		NR_135319	ENSG00000283554	LOC105370177	-	uncharacterized LOC105370177	ncRNA	0.832	0.917	0.685	0.145	0.245	0.086	0.091	0.061	0.058	0.056	0.074	0.134	0.353	0.010	0.079	0.598	0.377	0.122	0.188	0.408	0.448	0.477	0.263	0.182	0.200	0.207	0.350	0.195	0.117	0.448	0.250	0.238	0.397	0.056	0.108	0.472	1.160	0.360	0.398	4.187	0.650	0.017	0.112	0.091	0.134	0.039	0.077	0.088	0.138
8157	chr9	75189641	75199471	+	0	NA	intron (NM_138691, intron 2 of 23)	intron (NM_138691, intron 2 of 23)	57839	NM_138691	117531	Hs.670211	NM_138691	ENSG00000165091	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel like 1	protein-coding	nan	nan	nan	0.084	0.244	0.146	0.266	2.541	0.507	0.048	0.058	0.219	0.253	0.183	0.091	0.338	0.344	3.239	8.951	0.329	nan	0.060	0.062	0.259	0.275	1.276	1.804	0.427	0.542	0.201	0.065	0.096	0.229	0.199	0.169	0.417	0.811	0.779	0.687	0.006	0.070	0.020	0.015	0.266	0.219	0.050	0.092	0.030	0.309
8134	chr9	38348800	38401344	+	0	NA	Intergenic	L3|LINE|CR1	-17589	NM_000692	219	Hs.436219	NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding	0.772	nan	1.116	0.266	0.638	0.309	0.871	0.304	0.096	0.131	0.147	0.208	0.966	0.136	0.066	0.443	0.529	1.084	1.379	0.604	0.679	5.188	1.455	0.346	0.351	0.474	0.830	0.559	0.683	0.572	0.419	0.340	0.542	0.479	0.735	0.281	0.616	1.930	1.204	0.433	0.273	0.080	0.283	0.871	0.208	0.090	0.129	0.101	0.156
5850	chr4	24884381	24895918	+	0	NA	intron (NM_001330643, intron 1 of 12)	intron (NM_001330643, intron 1 of 12)	24451	NM_001330644	91050	Hs.106432	NM_173463	ENSG00000181982	CCDC149	-	coiled-coil domain containing 149	protein-coding	0.908	0.572	nan	0.152	0.340	0.139	0.134	0.136	0.028	0.111	0.129	0.233	0.232	0.023	0.065	0.321	0.284	0.148	0.294	0.239	0.400	0.261	0.094	0.297	0.235	0.246	0.454	0.975	0.949	0.580	0.453	0.205	0.184	0.064	0.070	0.477	1.011	nan	0.961	2.485	4.843	0.032	0.097	0.134	0.233	0.025	0.027	0.043	0.441
7902	chr8	121814782	121826904	+	0	NA	intron (NM_021021, intron 1 of 6)	MIRc|SINE|MIR	3466	NM_021021	6641	Hs.46701	NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding	nan	nan	nan	0.497	0.467	0.199	0.282	1.490	0.160	0.128	0.080	0.771	nan	0.394	0.080	0.470	0.574	1.117	2.039	0.880	0.996	1.345	0.277	nan	nan	0.248	0.442	2.277	2.877	0.463	0.432	0.360	0.856	0.132	0.211	0.190	0.876	0.372	0.398	6.374	0.262	0.008	0.007	0.282	0.771	0.024	0.204	0.113	0.062
7198	chr7	22350618	22418386	+	0	NA	intron (NM_012294, intron 1 of 25)	intron (NM_012294, intron 1 of 25)	12031	NM_012294	9771	Hs.174768	NM_012294	ENSG00000136237	RAPGEF5	GFR|MR-GEF|REPAC	Rap guanine nucleotide exchange factor 5	protein-coding	1.456	1.605	1.573	0.854	0.593	0.294	0.442	0.149	0.104	0.530	0.300	1.875	2.443	0.056	0.154	2.854	2.455	3.129	nan	1.068	1.132	1.755	0.514	1.466	1.492	1.418	1.792	2.287	2.659	0.963	0.897	1.379	2.136	0.570	0.673	0.935	nan	1.319	0.815	0.137	0.640	0.112	0.269	0.442	1.875	0.279	0.188	1.420	0.708
6975	chr6	134475716	134505425	+	0	NA	3' UTR (NM_001143676, exon 14 of 14)	3' UTR (NM_001143676, exon 14 of 14)	5464	NM_005627	6446	Hs.510078	NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding	0.988	1.387	1.897	0.846	0.423	0.249	1.141	0.749	0.142	0.105	0.099	0.296	0.895	6.475	0.222	0.505	0.394	0.925	1.451	0.893	0.859	nan	0.761	0.594	0.673	0.501	0.721	0.596	0.977	0.830	0.541	0.214	0.344	0.336	0.293	0.583	nan	0.358	0.305	0.441	0.128	0.067	0.204	1.141	0.296	0.179	0.475	0.060	0.192
4824	chr20	5665320	5686161	+	0	NA	Intergenic	Intergenic	-55293	NM_152504	149840	Hs.529340	NM_152504	ENSG00000171984	C20orf196	-	chromosome 20 open reading frame 196	protein-coding	0.958	1.736	0.799	0.549	0.341	0.192	0.229	0.137	0.123	0.106	0.165	0.161	0.482	0.047	0.079	0.705	0.567	0.263	0.297	0.487	0.563	1.225	0.338	0.256	0.291	0.279	0.555	5.009	3.377	0.597	0.341	0.217	0.430	0.250	0.277	0.539	1.595	0.623	0.568	0.222	0.203	0.032	0.045	0.229	0.161	0.061	0.552	0.248	0.249
309	chr1	53994282	54014858	+	0	NA	intron (NM_147193, intron 3 of 9)	intron (NM_147193, intron 3 of 9)	79498	NM_033067	63948	Hs.131654	NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding	1.469	0.700	0.996	0.094	0.248	0.116	0.553	0.715	0.155	0.121	0.109	0.087	0.472	0.084	0.092	0.497	0.660	0.424	0.836	0.793	0.759	0.726	0.289	0.469	0.488	3.030	3.454	0.275	0.482	1.727	2.337	0.408	0.413	0.276	0.336	0.710	nan	0.469	0.552	0.193	0.120	0.056	0.117	0.553	0.087	1.317	0.079	0.091	0.281
7485	chr7	130621524	130648131	+	0	NA	intron (NR_109853, intron 4 of 5)	LTR16C|LTR|ERVL	36604	NR_109780	100506860	Hs.635013	NR_109780		LINC00513	-	long intergenic non-protein coding RNA 513	ncRNA	nan	nan	nan	0.122	0.257	0.165	0.173	1.914	0.303	0.456	0.447	0.310	0.215	4.687	0.257	0.705	0.459	1.171	1.686	0.387	0.392	nan	0.213	0.338	0.286	0.176	nan	0.344	0.307	nan	0.897	0.460	0.580	0.333	0.296	0.370	0.779	0.808	nan	0.067	0.194	0.050	0.093	0.173	0.310	0.108	0.149	0.164	0.093
824	chr1	206617083	206630243	+	0	NA	intron (NM_001170637, intron 15 of 19)	intron (NM_001170637, intron 15 of 19)	-19923	NM_001193321	9641	Hs.321045	NM_014002	ENSG00000263528	IKBKE	IKK-E|IKK-i|IKKE|IKKI	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon	protein-coding	1.728	1.207	1.310	0.132	0.556	0.207	0.712	0.267	0.066	0.120	0.240	0.233	0.627	0.090	0.118	0.574	0.824	0.856	1.423	0.824	0.960	0.484	0.181	nan	nan	1.162	2.068	0.643	0.642	0.478	0.462	0.283	0.345	0.280	0.428	1.913	6.951	0.608	0.451	0.261	0.445	0.116	0.299	0.712	0.233	0.479	0.047	0.151	2.236
6369	chr5	93291912	93303644	+	0	NA	intron (NM_032042, intron 5 of 10)	intron (NM_032042, intron 5 of 10)	149626	NM_001163417	83989	Hs.600086	NM_032042	ENSG00000113391	FAM172A	C5orf21	family with sequence similarity 172 member A	protein-coding	nan	13.390	0.577	0.135	0.256	0.231	0.131	0.194	0.041	0.066	0.056		0.187	0.056	0.116	0.190	0.114	0.138	0.309	0.237	0.267	1.352	0.594	0.234	0.246	0.438	0.620	1.063	1.365	0.386	0.168	0.113	0.109	0.355	0.626	0.254	nan	0.361	0.269	0.052	0.169	0.111	0.046	0.131			0.154	0.033	0.127
4747	chr2	231916830	231924379	+	0	NA	promoter-TSS (NM_001191037)	promoter-TSS (NM_001191037)	-974	NM_001191037	5707	Hs.3887	NM_002807	ENSG00000173692	PSMD1	P112|Rpn2|S1	proteasome 26S subunit, non-ATPase 1	protein-coding	2.740	nan	2.780	2.349	3.033	1.818	2.693	0.744	0.087	0.761	0.721	2.795	4.293	1.713	0.145	3.320	3.413	4.013	5.265	3.067	3.293	2.533	1.970	7.381	7.780	1.774	2.547	7.149	nan	3.556	3.545	3.087	4.580	1.066	1.383	4.950	3.132	1.368	0.602	1.392	0.987	0.251	0.646	2.693	2.795	0.410	0.981	0.784	1.156
1148	chr10	77521522	77553587	+	0	NA	intron (NR_131178, intron 1 of 7)	MIR|SINE|MIR	-4965	NM_032024	83938	Hs.118161	NM_032024	ENSG00000148655	C10orf11	CDA017	chromosome 10 open reading frame 11	protein-coding	0.602	nan	0.809	0.223	0.841	0.355	0.200	0.261	0.084	0.177	0.145	0.676	0.287	0.034	0.076	1.425	1.816	0.658	0.749	0.312	0.389	2.361	0.811	0.191	0.188	0.203	0.352	0.647	nan	0.154	0.095	1.721	2.451	0.239	0.164	0.133	nan	0.904	0.567	0.054	0.114	0.045	0.079	0.200	0.676	0.026	0.219	3.238	0.017
254	chr1	41246597	41272504	+	0	NA	intron (NM_004700, intron 1 of 13)	L2b|LINE|L2	9866	NM_004700	9132	Hs.473058	NM_004700	ENSG00000117013	KCNQ4	DFNA2|DFNA2A|KV7.4	potassium voltage-gated channel subfamily Q member 4	protein-coding	nan	0.625	nan	0.166	1.256	0.669	0.367	0.107	0.050	0.222	0.195	0.629	0.573	0.356	0.092	3.763	4.842	0.445	0.613	1.116	1.015	0.554	0.202	5.523	5.625	0.706	nan	nan	1.328	0.464	0.373	1.916	nan	0.140	0.131	0.566	0.809	0.891	0.639	0.056	0.175	0.015	0.908	0.367	0.629	0.156	0.094	0.727	0.114
2386	chr13	97893051	97934709	+	0	NA	intron (NM_001306070, intron 1 of 7)	intron (NM_001306070, intron 1 of 7)	39330	NM_144778	10150	Hs.657347	NM_144778	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding	0.904	1.554	0.917	0.191	0.483	0.270	0.963	1.108	0.282	0.109	0.111	0.233	0.515	0.326	0.075	0.582	0.536	3.230	7.589	0.355	0.461	0.296	0.168	0.222	0.179	0.276	0.459	0.489	0.522	0.424	0.259	0.431	0.625	0.233	0.289	0.618	1.245	0.195	0.180	0.202	0.271	0.039	0.305	0.963	0.233	0.222	0.355	0.274	0.225
1321	chr11	13348452	13360976	+	0	NA	intron (NM_001297719, intron 3 of 19)	AluSx|SINE|Alu	55440	NM_001297722	406	Hs.65734	NM_001178	ENSG00000133794	ARNTL	BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	aryl hydrocarbon receptor nuclear translocator like	protein-coding	0.806	nan	0.847	2.391	1.483	0.869	1.478	1.112	0.115	0.603	0.320	1.142	3.323	0.074	0.083	nan	0.696	0.758	1.207	2.498	2.592	1.038	0.263	0.608	0.685	0.717	nan	2.007	2.183	0.496	0.320	0.420	0.601	1.802	2.335	0.213	0.448	1.464	nan	4.585	1.703	0.496	0.158	1.478	1.142	0.046	0.212	0.142	0.049
4214	chr2	11040048	11063086	+	0	NA	promoter-TSS (NM_002236)	promoter-TSS (NM_002236)	-496	NM_002236	3754	Hs.23735	NM_002236	ENSG00000162975	KCNF1	IK8|KCNF|KV5.1|kH1	potassium voltage-gated channel modifier subfamily F member 1	protein-coding	0.955	0.621	1.310	1.371	0.324	0.194	0.286	0.098	0.056	0.374	0.264	1.893	2.539	0.122	0.091	0.257	0.128	0.221	0.271	2.988	2.694	1.941	0.540	0.086	0.112	0.351	0.653	6.218	nan	0.911	0.870	0.227	0.221	0.169	0.267	0.807	nan	1.549	1.003	0.925	0.984	0.025	0.107	0.286	1.893	0.110	0.203	0.026	0.331
3945	chr19	4967923	4990150	+	0	NA	intron (NM_015015, intron 1 of 22)	AluJr|SINE|Alu	9912	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine demethylase 4B	protein-coding	1.243	1.797	2.660	0.547	1.213	0.687	0.688	0.366	0.242	0.565	0.446	1.787	3.399	0.313	0.067	0.884	1.228	0.876	1.241	2.675	3.145	0.834	0.233	1.382	1.384	1.204	2.153	2.974	nan	1.469	1.319	0.572	0.995	0.701	0.647	0.703	0.996	1.787	0.951	4.561	3.119	0.124	0.399	0.688	1.787	0.252	0.302	0.249	0.418
7457	chr7	117436439	117460173	+	0	NA	intron (NM_033427, intron 3 of 22)	intron (NM_033427, intron 3 of 22)	65255	NM_033427	83992	Hs.592285	NM_033427	ENSG00000077063	CTTNBP2	C7orf8|CORTBP2|Orf4	cortactin binding protein 2	protein-coding	nan	0.736	0.801	0.140	0.149	0.095	0.049	0.681	0.088	0.125	0.184	0.076	1.172	0.076	0.178	0.365	0.248	0.198	0.229	0.273	0.283	0.118	0.098	0.262	0.220	0.218	0.344	0.807	0.871	0.453	0.227	0.193	0.268	0.142	0.183	0.094	0.223	0.627	0.532	2.942	0.601	0.080	0.046	0.049	0.076	0.012	0.047	0.117	0.032
6615	chr6	11765980	11799909	+	0	NA	Intergenic	L2c|LINE|L2	-3664	NM_032744	84830	Hs.126409	NM_032744	ENSG00000111863	ADTRP	AIG1L|C6orf105|dJ413H6.1	androgen dependent TFPI regulating protein	protein-coding	0.854	nan	0.674	0.142	0.370	0.179	0.281	0.954	0.185	0.146	0.115	0.078	0.134	0.029	0.097	0.455	0.437	1.833	4.624	0.385	0.444	0.140	0.080	0.269	0.276	0.265	0.477	0.103	0.119	0.359	0.158	0.227	0.328	0.097	0.164	0.248	0.479	0.565	0.514	0.012	0.283	0.034	0.051	0.281	0.078	0.009	0.090	0.069	0.108
8179	chr9	86115398	86128346	+	0	NA	intron (NM_001244959, intron 1 of 14)	Tigger3b|DNA|TcMar-Tigger	31476	NM_001244959	257019	Hs.127535	NM_174938	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding	1.128	0.967	1.276	2.637	0.727	0.348	0.218	0.334	0.199	0.363	0.212	0.500	0.332	0.108	0.053	0.316	0.153	0.197	0.245	1.525	1.745	1.347	0.368	0.303	0.260	0.697	0.894	8.429	6.412	0.709	0.647	0.030	0.187	0.374	0.293	0.600	2.047	2.323	1.294	1.177	1.973	0.067	0.450	0.218	0.500	0.551	0.357	0.030	0.828
6496	chr5	146843917	146874107	+	0	NA	intron (NM_001197294, intron 1 of 13)	intron (NM_001197294, intron 1 of 13)	-25752	NM_001387	1809	Hs.519659	NM_001387	ENSG00000113657	DPYSL3	CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1	dihydropyrimidinase like 3	protein-coding	nan	1.968	0.978	1.443	4.333	2.335	0.169	0.561	0.096	1.606	0.561	3.705	2.228	0.054	0.113	0.544	1.094	0.784	1.267	1.851	1.861	2.565	2.348	0.088	0.066	2.351	3.170	2.906	4.352	1.763	1.794	0.558	1.027	3.799	4.098	1.288	3.274	1.857	0.996	0.331	0.445	0.722	0.155	0.169	3.705	0.151	1.468	0.653	0.383
3570	chr17	75345936	75397203	+	0	NA	promoter-TSS (NM_001113494)	promoter-TSS (NM_001113494)	-596	NM_001113494	10801	Hs.440932	NM_006640	ENSG00000184640	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding	2.123	1.967	2.121	0.820	0.946	0.450	0.625	1.118	0.241	0.645	0.385	1.317	3.690	0.430	0.114	2.795	4.223	0.572	1.025	1.310	1.337	1.441	0.485	1.343	1.326	nan	2.766	1.720	2.548	4.501	5.124	1.232	1.828	0.727	0.892	1.193	2.348	nan	0.719	1.003	0.376	0.147	0.174	0.625	1.317	0.553	0.687	0.577	0.716
851	chr1	212657802	212664556	+	0	NA	Intergenic	AluSp|SINE|Alu	54950	NM_013349	29937	Hs.461787	NM_013349	ENSG00000117691	NENF	CIR2|SCIRP10|SPUF	neudesin neurotrophic factor	protein-coding	2.833	3.771	5.242	1.788	5.126	2.411	2.375	0.705	0.094	4.684	1.100	4.629	nan	0.214	0.070	0.722	0.644	1.260	3.277	2.026	2.169	6.644	4.255	0.624	0.774	0.731	nan	2.052	3.363	1.766	2.079	0.187	0.244	3.701	5.472	1.462	3.421	2.120	1.371	0.301	0.196	0.327	0.534	2.375	4.629	1.117	1.583	0.015	0.791
2296	chr13	49202691	49207883	+	0	NA	Intergenic	Intergenic	-22560	NM_001308469	57105	Hs.253706	NM_020377	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding	0.666	nan	nan	0.050	0.156	0.061	0.221	0.087	0.094	0.089	0.048	0.138	0.038	0.041	0.068	1.437	1.397	8.872	4.089	0.362	0.413	nan	0.058	0.607	0.476	0.099	0.171	0.054	0.055	0.340	0.219	0.306	0.422	0.049	0.057	0.822	nan	0.056	0.165	0.065	0.018		0.004	0.221	0.138	0.018		0.114	0.237
4964	chr20	45005631	45018545	+	0	NA	exon (NM_001318253, exon 10 of 22)	exon (NM_001318253, exon 10 of 22)	-18991	NM_173073	51006	Hs.593344	NM_015945	ENSG00000080189	SLC35C2	BA394O2.1|C20orf5|CGI-15|OVCOV1	solute carrier family 35 member C2	protein-coding	nan	nan	0.975	0.257	0.319	0.132	0.062	0.292	0.088	0.169	0.087	0.084	0.439	0.079	0.104	3.644	4.987	0.794	0.439	0.506	0.595	nan	0.287	0.572	0.702	0.934	1.405	0.420	0.427	nan	1.960	0.701	1.314	0.064	0.082	0.447	1.182	0.969	0.439	0.022	0.112	0.022	0.847	0.062	0.084	0.202	0.032	0.501	0.124
1811	chr12	8086042	8090660	+	0	NA	intron (NM_006931, intron 1 of 9)	intron (NM_006931, intron 1 of 9)	541	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding	0.848	nan	nan	0.143	0.490	0.300	0.686	0.308	0.207	0.062	0.052	0.156	0.611	5.071	0.152	0.232	0.244	0.278	0.478	nan	1.750	0.187	0.078	0.340	0.429	1.004	1.042	0.094	0.121	2.265	2.492	0.443	0.751	0.072	0.077	1.125	nan	0.207	0.247	0.230	0.019		0.035	0.686	0.156	3.300	0.173	0.278	0.726
5427	chr3	89145039	89167791	+	0	NA	promoter-TSS (NM_005233)	promoter-TSS (NM_005233)	-259	NM_005233	2042	Hs.123642	NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding	nan	0.690	0.520	0.038	0.080	0.035	0.141	0.047	0.021	0.145	0.069	0.158	0.391	0.077	0.125	0.275	0.177	1.024	1.011	0.254	0.278	0.712	0.265	0.418	0.348	3.862	4.844	0.136	0.146	0.381	0.198	0.058	0.096	0.054	0.063	0.294	0.586	0.628	0.402	0.024	0.024	0.008	0.028	0.141	0.158	0.004	0.410	0.030	0.051
4412	chr2	78766273	78775448	+	0	NA	Intergenic	L1MD|LINE|L1	-1797	NR_136311	105374820	Hs.570225	NR_136311		LOC105374820	-	uncharacterized LOC105374820	ncRNA	nan	nan	0.571	2.546	2.519	1.608	0.098	0.253	0.017	0.394	0.283	1.759	0.246	0.084	0.131	0.437	0.164	0.220	0.208	0.312	0.272	7.580	3.209	0.323	0.202	0.190	0.271	1.601	3.242	0.418	0.183	0.112	0.131	0.037	0.033	0.604	0.944	nan	0.486	0.042	0.226	0.021	0.018	0.098	1.759	0.442	1.126	0.043	0.292
94	chr1	14922198	14941659	+	0	NA	intron (NM_201628, intron 1 of 14)	Tigger2a|DNA|TcMar-Tigger	6715	NM_201628	23254	Hs.368823	NM_015209	ENSG00000189337	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding	0.710	1.729	nan	0.265	0.667	0.437	0.426	0.074	0.058	0.056	0.085	0.184	2.025	0.090	0.130	2.443	3.532	6.408	4.675	1.296	1.288	1.445	0.595	4.764	nan	0.234	nan	1.080	1.525	nan	0.275	1.736	3.034	0.082	0.101	0.132	0.168	0.301	0.466	0.518	0.169	0.005	0.041	0.426	0.184	0.056	0.093	1.255	0.038
568	chr1	155138644	155149255	+	0	NA	intron (NM_173852, intron 3 of 4)	intron (NM_173852, intron 3 of 4)	1855	NM_173852	200185	Hs.516671	NM_173852	ENSG00000163463	KRTCAP2	KCP2	keratinocyte associated protein 2	protein-coding	nan	nan	2.125	1.408	1.750	0.944	3.872	0.990	0.213	1.279	0.732	2.157	7.521	2.336	0.172	2.280	3.056	2.185	2.845	5.672	nan	3.100	1.140	1.419	1.612	1.763	2.569	2.416	3.490	2.435	1.697	2.780	4.211	2.720	2.186	1.489	3.233	1.656	0.764	2.265	2.295	0.893	1.484	3.872	2.157	1.374	2.659	2.697	0.721
2668	chr14	70462452	70478644	+	0	NA	intron (NM_001034852, intron 7 of 11)	intron (NM_001034852, intron 7 of 11)	76386	NM_182936	6547	Hs.337696	NM_033262	ENSG00000100678	SLC8A3	NCX3	solute carrier family 8 member A3	protein-coding	1.520	2.441	1.247	1.649	0.555	0.247	1.158	0.216	0.040	2.316	1.054	0.160	0.677	0.041	0.105	0.311	0.156	0.361	0.875	0.394	0.301	4.769	2.773	0.215	0.223	0.507	0.883	1.605	nan	0.681	0.387	1.100	1.096	6.521	6.980	0.272	0.580	3.347	nan	0.103	0.225	2.761	0.182	1.158	0.160	0.054	4.866	1.298	0.184
2863	chr15	45471405	45480907	+	0	NA	intron (NM_138356, intron 2 of 7)	intron (NM_138356, intron 2 of 7)	-2751	NM_001301171	90525	Hs.310399	NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding	2.315	0.943	10.330	0.265	1.011	0.458	1.117	0.150	0.070	0.355	0.358	1.431	0.909	0.406	0.080	0.895	1.883	0.842	1.065	3.143	2.633	1.966	0.513	1.911	2.221	2.249	nan	1.631	1.613	6.586	6.890	0.597	1.104	1.757	2.406	2.444	4.817	1.598	0.947	0.801	0.296	0.404	2.588	1.117	1.431	1.822	1.210	0.370	1.485
8404	chrX	117813831	117820055	+	0	NA	intron (NM_144658, intron 51 of 52)	intron (NM_144658, intron 51 of 52)	-44616	NM_001560	3597	Hs.496646	NM_001560	ENSG00000131724	IL13RA1	CD213A1|CT19|IL-13Ra|NR4	interleukin 13 receptor subunit alpha 1	protein-coding	0.709	0.692	1.679	0.508	5.037	2.328	0.121	0.048	0.027	2.430	1.022	0.115	0.229	0.017	0.041	1.232	0.667	2.437	0.696	0.122	0.102	2.984	1.098	11.235	10.984	0.356	0.453	2.267	4.091	0.428	0.126	7.493	7.811	2.543	3.054	0.100	0.148	1.434	0.456	0.023	0.029	0.595	0.039	0.121	0.115	0.029	0.843	8.930	0.172
6474	chr5	139485661	139496222	+	0	NA	Intergenic	Intergenic	-2767	NM_005859	5813	Hs.443121	NM_005859	ENSG00000185129	PURA	MRD31|PUR-ALPHA|PUR1|PURALPHA	purine rich element binding protein A	protein-coding	2.851	2.799	nan	1.778	2.105	1.317	1.319	0.855	0.168	1.298	0.393	3.106	4.953	2.817	0.164	3.994	4.764	3.578	4.256	4.168	3.909	2.471	0.954	5.681	5.801	1.671	2.354	3.035	4.237	4.079	4.328	4.906	9.806	1.286	1.016	3.139	4.185	1.416	0.629	0.731	2.420	0.135	1.389	1.319	3.106	0.740	3.003	3.701	1.181
4334	chr2	50235151	50253965	+	0	NA	intron (NM_001135659, intron 22 of 23)	intron (NM_001135659, intron 22 of 23)	-43217	NM_001320157	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding	0.991	nan	0.778	0.155	0.291	0.139	0.483	0.079	0.060	0.424	0.357	0.687	0.764	0.057	0.095	0.344	0.145	0.201	0.257	0.759	0.796	0.498	0.194	0.483	0.473	1.507	1.739	0.516	0.662	0.500	0.242	0.093	0.184	0.383	0.507	0.499	0.749	0.706	0.557	4.347	0.615	0.166	0.127	0.483	0.687	0.696	0.103	0.047	0.230
5086	chr21	30443810	30451064	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-1319	NM_001282908	10694	Hs.125113	NM_006585	ENSG00000156261	CCT8	C21orf112|Cctq|D21S246|PRED71	chaperonin containing TCP1 subunit 8	protein-coding	3.813	1.959	5.030	3.682	2.142	1.257	2.495	1.382	0.174	1.290	0.886	1.746	6.983	1.793	0.120	3.799	4.126	3.292	4.254	5.294	4.975	6.148	2.622	9.091	9.488	3.225	4.231	6.998	9.904	9.185	9.456	2.170	4.416	6.287	6.176	4.012	4.144	nan	2.976	3.002	4.757	1.298	1.084	2.495	1.746	1.061	2.764	0.821	1.253
200	chr1	35653504	35663986	+	0	NA	promoter-TSS (NR_136703)	promoter-TSS (NR_136703)	1	NR_136702	6421	Hs.355934	NM_005066	ENSG00000116560	SFPQ	POMP100|PPP1R140|PSF	splicing factor proline and glutamine rich	protein-coding	4.018	nan	3.688	4.546	3.466	1.936	2.780	1.768	0.387	3.052	1.388	7.030	4.764	3.011	0.179	3.519	3.394	3.954	5.652	7.818	7.752	nan	2.121	7.657	7.802	2.980	3.795	10.219	14.214	nan	5.809	3.535	6.768	3.041	2.964	5.668	4.143	1.778	nan	2.681	2.852	0.457	1.945	2.780	7.030	0.916	1.316	0.913	1.143
1352	chr11	26088519	26109901	+	0	NA	Intergenic	Intergenic	-111460	NM_001313726	63982	Hs.91791	NM_031418	ENSG00000134343	ANO3	C11orf25|DYT23|DYT24|GENX-3947|TMEM16C	anoctamin 3	protein-coding	0.744	1.041	0.728	0.074	0.194	0.089	0.065	0.084	0.105	0.066	0.108	0.048	0.471	0.046	0.084	0.312	0.206	0.343	0.676	0.212	0.241	0.163	0.114	0.189	0.191	0.197	0.269	0.202	0.252	0.519	0.278	0.138	0.205	0.139	0.151	0.492	1.278	0.193	0.260	0.705	3.873	0.023	0.049	0.065	0.048	0.018	0.014	0.037	0.502
8387	chrX	53109558	53124709	+	0	NA	3' UTR (NM_022117, exon 7 of 7)	3' UTR (NM_022117, exon 7 of 7)	5591	NM_022117	64061	Hs.136164	NM_022117	ENSG00000184205	TSPYL2	CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX	TSPY like 2	protein-coding	1.733	1.732	0.823	1.361	2.685	1.398	0.825	0.677	0.109	0.808	0.498	0.999	2.837	1.774	0.067	0.750	0.974	1.505	2.161	3.233	2.474	2.597	0.798	1.937	1.955	0.810	1.210	2.345	3.256	2.134	2.042	0.828	1.551	1.598	1.655	1.457	2.707	1.065	0.528	0.831	0.617	0.339	0.707	0.825	0.999	0.337	2.645	0.653	0.459
1621	chr11	109962115	109965941	+	0	NA	promoter-TSS (NM_033390)	promoter-TSS (NM_033390)	-59	NM_033390	85463	Hs.376289	NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding	3.475	3.425	3.675	4.128	4.337	2.219	4.204	2.640	0.212	2.747	1.057	6.383	13.992	4.654	0.164	17.128	22.721	4.167	6.885	14.546	12.957	8.456	4.965	8.718	8.649	5.009	6.573	5.189	9.810	7.529	10.486	4.819	8.880	6.735	5.929	2.551	1.150	3.393	1.826	3.973	3.608	1.476	6.595	4.204	6.383	1.393	3.665	1.503	0.548
7681	chr8	54784606	54807244	+	0	NA	intron (NR_104579, intron 1 of 3)	AluSp|SINE|Alu	2493	NM_003702	8601	Hs.368733	NM_003702	ENSG00000147509	RGS20	RGSZ1|ZGAP1|g(z)GAP|gz-GAP	regulator of G-protein signaling 20	protein-coding	1.763	nan	1.140	0.399	0.395	0.121	1.182	0.241	0.070	0.090	0.062	0.480	1.500	4.435	0.227	0.358	0.330	0.235	0.435	1.176	0.972	0.518	0.172	0.235	0.237	0.816	nan	0.471	0.628	1.300	1.106	0.224	0.485	1.634	1.279	0.716	1.399	0.456	0.426	0.255	0.038	0.432	0.248	1.182	0.480	0.126	0.113	0.101	0.534
5945	chr4	78062490	78119557	+	0	NA	3' UTR (NM_004354, exon 8 of 8)	3' UTR (NM_004354, exon 8 of 8)	12666	NM_004354	901	Hs.740456	NM_004354	ENSG00000138764	CCNG2	-	cyclin G2	protein-coding	1.273	0.849	1.998	0.636	0.730	0.379	0.472	0.229	0.138	0.260	0.129	0.558	1.187	0.262	0.075	0.751	0.743	1.326	2.817	0.827	0.872	1.257	0.530	1.042	1.086	0.521	0.661	0.908	1.167	1.255	1.012	0.245	0.483	0.462	0.483	1.304	4.017	0.599	0.411	0.413	0.728	0.131	0.554	0.472	0.558	0.070	0.225	0.266	1.021
5145	chr21	43868758	43888025	+	0	NA	Intergenic	AluY|SINE|Alu	38073	NM_001286506	89765	Hs.661069	NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head 1 homolog	protein-coding	nan	1.094	1.219	0.711	1.832	0.999	0.485	0.054	0.058	0.431	0.162	1.719	0.778	0.051	0.058	2.255	3.689	0.930	1.413	3.049	2.349	nan	1.697	1.271	1.337	0.187	nan	2.189	3.528	1.266	1.375	1.277	1.785	0.572	0.403	0.685	2.452	1.744	1.432	1.220	1.154	0.029	0.128	0.485	1.719	0.300	0.131	1.243	0.939
7516	chr7	140766752	140776911	+	0	NA	Intergenic	Intergenic	-2201	NM_001195278	100507421	Hs.283851	NM_001195278	ENSG00000261115	TMEM178B	-	transmembrane protein 178B	protein-coding	3.996	1.403	1.022	2.981	2.624	1.321	2.765	0.105	0.016	1.708	0.888	6.603	14.820	1.661	0.162	3.531	4.972	0.192	0.382	6.394	5.418	5.781	1.916	4.805	4.632	1.930	2.525	2.995	5.136	2.914	3.448	2.771	6.026	2.838	2.148	0.244	0.387	2.242	nan	3.850	7.429	0.533	1.742	2.765	6.603	1.357	1.903	2.208	0.049
109	chr1	17214520	17257921	+	0	NA	Intergenic	L1MEc|LINE|L1	-12225	NM_014675	9696	Hs.309403	NM_014675	ENSG00000058453	CROCC	ROLT|TAX1BP2	ciliary rootlet coiled-coil, rootletin	protein-coding	4.384	3.076	nan	3.488	2.431	1.304	3.300	0.571	0.181	1.054	0.629	0.837	5.682	2.488	0.238	3.725	4.296	2.940	4.341	6.907	6.649	3.592	2.275	3.785	nan	2.721	nan	4.797	5.894	nan	3.454	3.460	4.242	1.607	1.468	4.244	7.191	3.055	1.856	6.008	2.284	0.446	1.066	3.300	0.837	1.241	1.348	1.843	2.527
5232	chr22	28824937	28840181	+	0	NA	intron (NM_001145418, intron 2 of 22)	intron (NM_001145418, intron 2 of 22)	-23298	NR_106713	102466081		NR_106713	ENSG00000276162	MIR5739	hsa-mir-5739	microRNA 5739	ncRNA	nan	0.579	0.743	0.149	0.427	0.264	0.511	2.163	0.137	0.143	0.153	0.095	0.244	0.438	0.084	0.391	0.197	0.208	nan	0.200	0.254	0.661	0.188	0.260	0.300	4.435	5.818	0.222	0.318	0.842	0.445	0.088	0.161	1.901	1.547	0.239	nan	1.034	0.837	0.055	0.082	0.429	0.179	0.511	0.095	0.101	0.083	0.026	0.113
4464	chr2	109875434	109898013	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	43358	NR_036224	100423027		NR_036224	ENSG00000265965	MIR4266	-	microRNA 4266	ncRNA	0.929	nan	1.000	0.637	0.275	0.164	0.391	0.218	0.021	0.382	0.228	0.229	2.389	0.091	0.065	0.422	0.469	0.177	0.290	2.168	1.943	0.179	0.096	0.369	0.498	0.767	1.093	4.112	3.522	0.486	0.430	0.211	0.290	0.124	0.119	0.467	0.909	0.593	0.397	1.364	1.021	0.030	0.129	0.391	0.229	0.151	0.723	0.044	0.154
2651	chr14	65089273	65105038	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	-73971	NM_001308147	26030	Hs.509637	NM_015549	ENSG00000126822	PLEKHG3	ARHGEF43|KIAA0599	pleckstrin homology and RhoGEF domain containing G3	protein-coding	nan	nan	4.968	0.260	0.464	0.306	0.318	0.277	0.163	0.267	0.131	0.264	0.391	0.165	0.130	0.344	0.293	0.300	0.361	0.497	0.548	0.778	0.282	nan	0.567	0.332	0.541	0.661	nan	1.066	0.936	0.254	0.278	1.649	2.400	0.671	1.621	1.224	0.937	0.225	0.666	0.577	0.244	0.318	0.264	0.221	0.090	0.088	0.883
7526	chr7	142454188	142460828	+	0	NA	intron (NM_002769, intron 1 of 4)	intron (NM_002769, intron 1 of 4)	189	NM_002769	5644	Hs.382212	NM_002769	ENSG00000204983	PRSS1	TRP1|TRY1|TRY4|TRYP1	protease, serine 1	protein-coding	0.799	0.680	1.423	0.082	0.213	0.096	0.137	0.113	0.096	0.638	0.260	0.126	1.916	0.093	0.163	0.530	0.242	0.278	0.461	0.215	0.219	0.328	0.136	0.501	0.527	0.119	0.260	0.091	0.105	0.309	0.188	0.213	0.308	0.170	0.144	0.312	0.454	1.901	nan	9.752	5.492	0.102	0.012	0.137	0.126	0.014		0.030	0.114
7476	chr7	129587864	129599535	+	0	NA	promoter-TSS (NM_003344)	promoter-TSS (NM_003344)	-899	NM_003344	7328	Hs.643548	NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding	2.451	1.488	3.155	1.658	1.432	0.892	1.284	1.892	0.247	1.597	0.842	2.022	3.747	2.027	0.183	1.300	1.840	2.189	4.640	1.877	2.176	7.502	2.942	2.600	2.688	1.003	1.345	1.409	2.561	2.060	1.371	1.155	2.709	2.477	3.484	2.722	3.888	2.385	1.337	1.032	0.906	0.537	0.449	1.284	2.022	0.412	0.877	1.420	0.721
2764	chr14	100770856	100781649	+	0	NA	Intergenic	Intergenic	2056	NR_029906	442910		NR_029906	ENSG00000198984	MIR345	MIRN345|hsa-mir-345|mir-345	microRNA 345	ncRNA	5.958	2.291	2.139	3.085	1.914	0.966	2.553	1.048	0.104	1.510	0.795	2.099	6.331	1.510	0.096	1.633	1.895	1.853	2.735	4.348	3.996	2.513	0.815	1.327	1.145	0.955	1.669	2.610	4.022	2.071	1.835	0.726	1.397	2.166	2.161	1.522	2.402	2.251	1.339	2.529	5.359	0.561	1.170	2.553	2.099	0.969	1.184	0.313	0.617
6437	chr5	124295506	124407108	+	0	NA	Intergenic	AluSz6|SINE|Alu	-21217	NR_109882	101927421	Hs.121305	NR_109882		LOC101927421	-	uncharacterized LOC101927421	ncRNA	nan	0.933	0.706	0.116	0.480	0.261	0.202	0.378	0.079	0.125	0.161	0.135	0.703	8.129	0.288	0.382	0.290	0.960	nan	0.274	0.348	0.520	0.201	0.615	0.652	0.673	0.929	0.362	0.300	0.398	0.185	0.153	0.219	1.191	1.551	0.311	0.895	0.378	0.325	0.056	0.128	0.398	0.110	0.202	0.135	0.056	0.119	0.083	0.125
2797	chr14	105552391	105561500	+	0	NA	Intergenic	Intergenic	-3539	NR_110546	102723354	Hs.569410	NR_110546		LOC102723354	-	uncharacterized LOC102723354	ncRNA	3.827	1.188	1.275	0.848	1.070	0.387	0.379	1.886	0.392	0.207	0.288	0.839	3.800	10.490	0.172	0.815	1.740	1.286	3.331	2.084	1.717	2.402	0.776	0.499	0.658	0.382	0.622	0.595	0.873	1.627	1.705	1.526	2.268	1.444	0.723	0.673	1.375	0.172	0.167	2.867	0.282	0.240	0.348	0.379	0.839	1.239	0.078	1.132	0.230
5869	chr4	40303120	40339913	+	0	NA	intron (NR_121640, intron 1 of 2)	AluSg4|SINE|Alu	3014	NR_121640	101060498	Hs.351492	NR_121640	ENSG00000249241	LOC101060498	-	uncharacterized LOC101060498	ncRNA	1.123	nan	nan	0.816	1.867	0.977	5.105	0.929	0.184	0.638	0.338	0.895	1.446	0.432	0.099	0.812	1.217	1.360	3.351	0.573	0.694	3.090	1.874	0.678	0.707	0.497	0.818	1.170	1.519	0.709	0.428	0.522	0.901	0.801	1.272	0.377	0.950	2.565	1.681	0.420	0.415	0.115	0.745	5.105	0.895	0.045	0.228	0.420	0.371
5177	chr22	17731467	17764930	+	0	NA	promoter-TSS (NR_038398)	promoter-TSS (NR_038398)	-575	NR_038398	27442	Hs.517394	NR_038398	ENSG00000241832	CECR3	-	cat eye syndrome chromosome region, candidate 3 (non-protein coding)	ncRNA	1.665	nan	1.166	0.754	1.311	0.667	1.976	0.074	0.096	0.629	0.329	1.341	1.613	0.075	0.085	1.153	2.141	0.565	0.620	1.846	1.927	1.635	0.570	0.541	0.575	0.615	1.045	2.880	3.492	2.509	2.176	0.449	0.815	1.400	1.429	0.418	1.235	4.076	2.029	0.757	2.293	0.568	0.420	1.976	1.341	0.942	0.898	0.360	0.288
1556	chr11	83384082	83394651	+	0	NA	intron (NM_001142700, intron 10 of 19)	intron (NM_001142700, intron 10 of 19)	4102	NM_001142702	1740	Hs.367656	NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding	1.011	0.754	0.676	0.231	1.910	0.942	1.562	0.085	0.046	0.667	0.456	0.045	2.944	0.052	0.140	0.885	1.006	5.329	3.074	5.633	5.034	0.318	0.113	1.276	1.066	1.306	1.444	0.607	0.837	0.816	0.743	4.769	7.115	5.032	4.838	0.204	0.663	2.612	1.535	0.027	4.129	1.371	0.270	1.562	0.045	0.083	0.068	5.428	0.036
4800	chr20	380656	390712	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3010	NM_001323958	10616	Hs.29546	NM_006462	ENSG00000125826	RBCK1	C20orf18|HOIL-1|HOIL1|PBMEI|PGBM1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4	RANBP2-type and C3HC4-type zinc finger containing 1	protein-coding	3.201	3.329	2.577	3.676	4.873	2.492	1.336	1.108	0.175	1.195	0.628	1.923	6.820	1.326	0.147	3.357	4.498	1.929	2.546	3.062	2.484	5.169	2.261	8.666	8.935	1.901	2.473	4.633	4.605	6.031	5.670	6.768	5.139	1.857	3.193	1.591	2.196	1.177	0.685	1.896	4.082	0.572	0.867	1.336	1.923	1.706	3.026	3.100	0.588
3682	chr18	20511846	20516243	+	0	NA	TTS (NR_039895)	TTS (NR_039895)	205	NM_203291	5932	Hs.546282	NM_002894	ENSG00000101773	RBBP8	COM1|CTIP|JWDS|RIM|SAE2|SCKL2	RB binding protein 8, endonuclease	protein-coding	4.664	3.308	4.135	7.399	4.044	1.965	8.041	2.313	0.132	1.770	1.461	5.190	9.826	2.612	0.114	5.106	5.550	3.692	nan	11.825	10.466	12.656	6.854	8.405	8.549	3.126	4.084	5.948	7.420	5.995	6.665	1.194	2.537	10.275	11.602	4.630	5.824	4.664	2.638	4.261	2.243	2.159	2.337	8.041	5.190	0.993	2.723	0.676	1.871
4593	chr2	172008917	172018871	+	0	NA	intron (NM_001136554, intron 1 of 20)	intron (NM_001136554, intron 1 of 20)	3516	NM_012290	9874	Hs.744917	NM_012290	ENSG00000198586	TLK1	PKU-beta	tousled like kinase 1	protein-coding	4.040	2.193	3.820	2.324	3.078	1.719	2.204	1.349	0.243	1.023	0.698	2.936	6.007	1.786	0.093	2.316	3.373	2.638	3.969	3.870	3.357	2.284	0.754	6.663	6.738	3.147	4.259	6.207	9.263	4.410	5.829	2.468	4.743	3.076	2.798	6.899	9.301	1.230	0.822	2.352	1.716	0.975	1.616	2.204	2.936	0.566	0.744	1.931	3.325
7160	chr7	11335572	11384082	+	0	NA	Intergenic	LTR33|LTR|ERVL	346328	NR_033435	9678	Hs.655688	NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding	nan	1.055	nan	0.174	0.252	0.148	0.211	0.142	0.077	0.026	0.032	0.232	0.470	0.050	0.150	nan	0.280	0.594	0.456	0.472	0.557	0.251	0.104	14.739	16.024	0.951	1.352	0.372	0.352	0.333	0.169	0.144	0.266	0.271	0.358	0.341	0.604	0.588	0.508	0.078	0.109	0.072	0.070	0.211	0.232	0.108	0.104	0.055	0.117
7320	chr7	72933538	72948769	+	0	NA	Intergenic	AluSx3|SINE|Alu	-4538	NM_032408	9031	Hs.743372	NM_023005	ENSG00000009954	BAZ1B	WBSCR10|WBSCR9|WSTF	bromodomain adjacent to zinc finger domain 1B	protein-coding	nan	1.272	2.157	1.893	3.075	1.463	2.025	1.867	0.546	1.483	1.116	2.052	2.880	2.408	0.211	4.001	4.135	3.437	nan	3.996	3.817	4.042	1.895	2.964	2.940	1.229	nan	4.175	nan	3.766	4.154	2.006	3.190	3.895	5.027	3.477	2.766	2.732	1.473	1.770	2.083	1.131	1.545	2.025	2.052	0.595	0.883	1.163	0.950
5049	chr20	62273171	62290948	+	0	NA	intron (NM_015894, intron 1 of 4)	intron (NM_015894, intron 1 of 4)	2060	NM_001276310	50861	Hs.639609	NM_015894	ENSG00000197457	STMN3	SCLIP	stathmin 3	protein-coding	2.968	2.713	2.135	2.536	2.268	1.115	2.193	0.446	0.255	1.356	0.666	3.002	5.619	1.743	0.126	3.859	nan	1.007	1.256	4.716	4.492	5.427	1.971	2.472	2.624	2.024	3.181	2.801	3.786	2.910	3.068	1.977	3.226	1.136	0.935	2.105	2.361	2.486	1.415	2.717	2.928	0.386	1.462	2.193	3.002	0.985	3.010	1.105	0.909
1766	chr12	2413439	2438510	+	0	NA	intron (NM_001129830, intron 3 of 47)	intron (NM_001129830, intron 3 of 47)	47032	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA	0.964	nan	nan	0.101	3.571	1.865	0.536	0.206	0.058	1.167	0.590	8.761	2.930	0.039	0.085	0.254	0.372	0.179	0.225	nan	7.859	0.196	0.090	0.400	0.473	0.900	1.423	3.161	2.276	0.379	0.230	0.374	0.474	0.234	0.236	0.358	nan	1.706	0.756	1.341	0.089	0.043	0.164	0.536	8.761	0.155	0.775	0.146	0.231
7806	chr8	96280012	96283803	+	0	NA	promoter-TSS (NM_177965)	promoter-TSS (NM_177965)	-445	NM_177965	157657	Hs.548157	NM_177965	ENSG00000156172	C8orf37	BBS21|CORD16|RP64|smalltalk	chromosome 8 open reading frame 37	protein-coding	nan	2.658	6.391	7.467	6.318	2.625	2.821	2.271	0.170	1.530	0.798	4.259	19.588	5.167	0.056	4.581	5.521	3.020	nan	9.081	8.137	9.984	3.801	9.720	10.952	6.137	7.219	20.181	22.798	9.682	9.725	3.006	6.175	8.187	7.305	6.348	8.122	3.823	2.141	3.728	5.138	1.558	2.310	2.821	4.259	0.974	3.911	2.564	3.265
7840	chr8	102240966	102279971	+	0	NA	Intergenic	Intergenic	-42176	NM_001267709	51123	Hs.374485	NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding	2.201	nan	nan	2.867	4.755	2.652	0.491	0.150	0.095	0.563	0.356	3.946	11.410	0.032	0.075	0.355	0.285	0.182	0.238	3.515	3.514	nan	1.465	0.389	0.449	1.297	nan	12.479	nan	nan	0.873	0.262	0.384	2.655	2.358	0.532	nan	3.054	1.549	2.707	2.727	0.817	0.299	0.491	3.946	0.545	1.254	0.089	0.270
3982	chr19	14116093	14118471	+	0	NA	promoter-TSS (NM_002918)	promoter-TSS (NM_002918)	-148	NM_002918	5989	Hs.655215	NM_002918	ENSG00000132005	RFX1	EFC|RFX	regulatory factor X1	protein-coding	9.225	5.227	7.810	6.851	7.632	4.158	6.026	2.141	0.338	4.014	0.493	7.659	10.522	4.853	0.187	5.282	9.944	7.485	11.118	11.927	10.330	14.041	23.480	23.893	23.835	6.065	8.061	11.448	21.805	12.437	14.089	3.509	4.885	15.004	11.476	14.699	10.517	6.007	4.530	3.839	3.913	1.477	2.276	6.026	7.659	2.114	4.201	1.205	3.936
5841	chr4	16044710	16087191	+	0	NA	intron (NM_001145850, intron 1 of 24)	L1ME3A|LINE|L1	11791	NM_001145852	8842	Hs.614734	NM_006017	ENSG00000007062	PROM1	AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4	prominin 1	protein-coding	nan	nan	nan	1.442	0.495	0.222	0.564	0.319	0.099	0.464	0.289	1.030	0.824	0.028	0.072	0.361	0.256	4.863	6.144	0.868	0.821	1.609	0.635	1.185	1.167	0.201	0.271	1.311	1.462	0.375	0.157	0.111	0.236	0.343	0.284	1.480	3.646	nan	0.884	0.068	0.200	0.061	0.181	0.564	1.030	0.021	0.359	0.020	2.428
2072	chr12	89738122	89787906	+	0	NA	Intergenic	Intergenic	-16378	NM_022652	1848	Hs.298654	NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	1.541	2.234	1.385	0.914	0.680	0.372	0.872	2.394	0.227	0.364	0.230	0.428	3.479	5.222	0.186	1.075	1.018	1.328	1.700	1.075	0.824	2.877	0.823	0.911	0.862	0.859	1.391	1.945	1.935	0.491	0.271	0.267	0.396	0.518	0.567	0.207	0.308	1.659	1.321	0.726	0.203	0.093	0.038	0.872	0.428	0.050	1.337	0.051	0.102
5647	chr3	168831472	168837975	+	0	NA	intron (NM_004991, intron 7 of 16)	intron (NM_004991, intron 7 of 16)	29370	NM_001105077	2122	Hs.744090	NM_004991	ENSG00000085276	MECOM	AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2	MDS1 and EVI1 complex locus	protein-coding	1.159	1.163	1.072	0.176	0.402	0.339	0.192	0.461	0.050	0.244	0.243	0.128	0.208	0.084	0.077	0.273	0.231	6.930	3.370	0.300	0.500	0.204	0.102	0.184	0.137	0.574	0.808	nan	0.359	nan	0.206	0.074	0.221	0.951	0.884	0.276	0.508	0.657	0.501	0.009	0.050	0.059		0.192	0.128	0.015	0.079	0.077	0.292
8094	chr9	23842470	23852207	+	0	NA	Intergenic	Intergenic	-21275	NM_004432	1993	Hs.166109	NM_004432	ENSG00000107105	ELAVL2	HEL-N1|HELN1|HUB	ELAV like RNA binding protein 2	protein-coding	0.719	nan	nan	0.027	0.233	0.165	0.662	0.116	0.066	0.400	0.458	0.037	0.425	0.023	0.069	0.238	0.154	0.227	0.373	2.300	1.899	0.296	0.132	0.024	0.028	1.770	1.822	0.190	0.265	1.803	1.813	0.374	0.615	5.839	5.321	0.374	0.743	2.053	1.492	0.045	0.054	1.445	0.017	0.662	0.037	0.030	0.590	0.169	0.076
3121	chr16	32685592	32701406	+	0	NA	Intergenic	Intergenic	-6049	NR_110886	24150	Hs.592038	NM_015369	ENSG00000183632	TP53TG3	P53TG3|TP53TG3A|TP53TG3E|TP53TG3F	TP53 target 3	protein-coding	0.630	0.751	0.687	0.083	2.693	1.204	0.220	0.075	0.098	0.167	0.089	0.667	2.648	0.625	0.100	0.303	0.174	0.191	0.158	1.140	0.813	1.271	0.506	0.447	0.309	0.546	0.693	5.659	7.443	0.506	0.198	0.161	0.232	0.099	0.176	0.121	0.139	0.280	0.321	4.270	0.034	0.042	0.050	0.220	0.667	0.105	1.538	0.056	0.054
3507	chr17	64707374	64727792	+	0	NA	intron (NM_002737, intron 8 of 16)	MER41B|LTR|ERV1	-65607	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA	0.921	nan	1.063	0.604	0.757	0.432	1.150	0.230	0.187	0.454	0.376	0.636	4.880	0.058	0.097	0.601	0.584	0.283	0.482	0.680	0.747	2.807	0.806	0.293	0.338	0.518	nan	2.400	2.517	0.789	0.487	0.269	0.405	0.666	0.845	0.274	0.355	1.134	0.883	0.531	0.131	0.182	0.120	1.150	0.636	0.142	0.880	0.058	0.134
5733	chr3	182194894	182228438	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-7516	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA	1.135	1.493	1.091	3.110	0.650	0.329	0.352	0.151	0.124	0.827	0.451	0.347	2.643	0.061	0.100	0.310	0.160	0.266	0.716	0.814	0.978	6.000	2.244	0.155	0.130	0.753	1.169	2.269	2.639	0.849	0.515	0.138	0.204	2.500	1.726	0.243	0.397	1.100	0.595	1.676	1.088	0.480	4.764	0.352	0.347	0.023	0.526	0.031	0.245
3427	chr17	43655835	43664869	+	0	NA	Intergenic	Intergenic	18876	NR_026901	644172	Hs.448859	NR_026901		MAPK8IP1P2	-	mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2	pseudo	5.801	4.388	nan	9.627	5.776	2.877	4.223	3.429	0.930	3.589	1.614	5.107	15.153	4.214	0.198	9.546	8.881	4.781	6.486	11.986	nan	9.222	4.678	15.998	16.315	4.507	5.807	12.165	16.061	8.906	8.789	8.748	12.140	4.944	4.691	3.518	3.181	3.879	2.613	8.045	5.525	1.171	4.816	4.223	5.107	3.374	2.462	4.381	1.076
2624	chr14	59156513	59182777	+	0	NA	Intergenic	Intergenic	64090	NR_046095	51339	Hs.48950	NM_016651	ENSG00000165617	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3	dishevelled binding antagonist of beta catenin 1	protein-coding	nan	nan	1.867	0.950	0.333	0.130	0.960	0.324	0.177	0.244	0.296	0.309	0.429	0.041	0.116	0.332	0.211	0.318	0.407	0.810	0.714	2.267	0.877	nan	0.394	0.953	1.339	0.840	nan	1.007	0.432	0.173	0.259	5.226	4.842	0.966	4.131	1.061	0.700	7.694	0.708	2.471	0.726	0.960	0.309	0.097	0.144	0.048	1.833
7553	chr7	154789324	154796826	+	0	NA	intron (NM_007349, intron 1 of 20)	(CAAAAA)n|Simple_repeat|Simple_repeat	1607	NM_007349	22976	Hs.443881	NM_007349	ENSG00000157212	PAXIP1	CAGF28|CAGF29|PACIP1|PAXIP1L|PTIP|TNRC2	PAX interacting protein 1	protein-coding	2.905	2.250	nan	2.650	3.301	1.944	3.374	1.897	0.346	2.043	0.961	5.919	4.452	3.039	0.150	4.417	4.696	3.107	3.921	4.737	5.482	4.458	3.115	3.900	3.965	2.074	2.697	4.063	6.274	4.066	4.328	4.697	8.094	4.667	4.065	3.506	2.818	2.888	1.587	3.358	4.989	1.477	1.696	3.374	5.919	0.993	2.024	1.863	0.857
5805	chr3	195806116	195810164	+	0	NA	intron (NM_001313965, intron 1 of 17)	intron (NM_001313965, intron 1 of 17)	821	NM_003234	7037	Hs.529618	NM_003234	ENSG00000072274	TFRC	CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90	transferrin receptor	protein-coding	6.384	5.722	1.852	6.482	5.816	3.036	3.184	1.924	0.195	3.621	2.355	4.933	12.699	1.121	0.115	5.143	5.871	6.825	9.189	9.411	7.704	9.432	4.367	11.425	11.818	5.585	6.944	8.080	12.170	11.494	16.801	5.056	9.450	6.935	6.127	7.709	7.866	4.563	2.328	6.452	6.757	0.983	4.699	3.184	4.933	1.471	1.353	3.694	3.830
1157	chr10	79623371	79673781	+	0	NA	intron (NM_004747, intron 1 of 31)	intron (NM_004747, intron 1 of 31)	37772	NM_004747	9231	Hs.652690	NM_004747	ENSG00000151208	DLG5	LP-DLG|P-DLG5|PDLG	discs large MAGUK scaffold protein 5	protein-coding	0.915	nan	1.750	0.718	0.691	0.341	0.241	0.458	0.129	0.478	0.204	0.722	2.328	0.068	0.060	0.884	1.256	0.612	0.978	0.789	0.749	2.243	0.823	0.413	0.415	0.653	0.982	4.425	nan	0.935	0.926	0.624	1.044	0.471	0.471	0.353	nan	0.591	0.442	0.713	0.480	0.125	0.276	0.241	0.722	0.396	0.260	0.496	0.169
1470	chr11	65307726	65338765	+	0	NA	intron (NM_001164266, intron 1 of 26)	intron (NM_001164266, intron 1 of 26)	2454	NM_001130144	4054	Hs.289019	NM_021070	ENSG00000168056	LTBP3	DASS|LTBP-3|LTBP2|STHAG6|pp6425	latent transforming growth factor beta binding protein 3	protein-coding	nan	1.623	1.190	1.427	1.573	0.828	1.418	0.543	0.146	0.825	0.438	2.130	2.881	1.761	0.127	1.633	2.984	1.352	2.217	3.064	3.261	2.187	0.726	1.800	1.992	1.395	2.270	3.669	4.106	1.442	1.159	1.201	1.870	1.077	1.101	0.685	1.564	1.688	0.819	1.906	1.776	0.260	0.575	1.418	2.130	0.508	0.734	0.696	0.359
5790	chr3	193900876	193931437	+	0	NA	Intergenic	Intergenic	7940	NR_125404	100505920	Hs.436654	NR_125403	ENSG00000225742	LINC02036	-	long intergenic non-protein coding RNA 2036	ncRNA	nan	1.633	1.231	0.896	1.818	1.076	0.369	0.254	0.112	1.226	0.737	0.689	nan	0.113	0.088	1.037	1.232	1.192	1.110	0.721	0.832	4.329	1.911	0.847	0.845	0.302	0.456	1.435	1.680	0.829	0.464	0.823	0.952	1.016	1.082	0.497	1.023	1.098	0.785	2.263	0.505	0.281	0.268	0.369	0.689	0.137	0.585	0.423	0.295
5330	chr3	16277781	16290264	+	0	NA	Intergenic	AluJb|SINE|Alu	22474	NM_001047434	285381	Hs.388087	NM_206831	ENSG00000154813	DPH3	DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2	diphthamide biosynthesis 3	protein-coding	nan	0.765	1.796	0.099	0.089	0.065	0.132	0.126	0.112	0.101	0.073	0.029	0.330	0.044	0.076	0.294	0.335	0.504	0.489	0.398	0.472	0.560	0.214	0.122	0.179	1.858	2.091	0.253	0.307	6.375	5.366	0.356	0.367	0.077	0.093	1.205	1.506	0.656	0.470	0.015	0.057	0.023	0.037	0.132	0.029	0.123	0.204	0.135	0.682
6986	chr6	135583126	135595161	+	0	NA	Intergenic	Intergenic	28845	NR_030317	693126		NR_030317	ENSG00000207689	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA	0.866	1.224	2.855	1.292	2.979	1.685	0.478	0.050	0.094	0.468	0.358	4.541	0.801	0.090	0.113	1.028	0.855	2.243	3.378	4.908	5.114	6.813	1.937	1.513	1.689	0.205	0.363	2.560	1.542	0.588	0.237	0.500	0.557	0.690	0.590	0.270	nan	1.437	0.844	0.561	0.435	0.115	0.473	0.478	4.541	0.162	0.194	0.111	0.140
7464	chr7	123383581	123393417	+	0	NA	intron (NM_003941, intron 1 of 10)	CpG	626	NM_003941	8976	Hs.143728	NM_003941	ENSG00000106299	WASL	N-WASP|NWASP|WASPB	Wiskott-Aldrich syndrome like	protein-coding	3.974	1.745	3.138	3.015	3.068	1.690	2.145	1.922	0.214	2.158	1.363	3.733	4.715	3.454	0.190	3.190	3.711	3.353	4.454	5.634	4.865	4.646	2.532	3.699	3.787	2.871	3.212	3.167	5.346	5.872	6.191	2.591	6.068	4.477	4.566	7.155	8.805	3.155	1.950	1.565	3.054	0.988	2.500	2.145	3.733	0.798	1.464	2.297	2.055
4835	chr20	6554850	6580981	+	0	NA	Intergenic	Intergenic	160536	NR_109953	101929244	Hs.542488	NR_109953	ENSG00000229876	CASC20	-	cancer susceptibility candidate 20 (non-protein coding)	ncRNA	0.739	1.126	0.625	0.136	0.285	0.147	0.284	0.171	0.043	0.083	0.122	0.101	0.360	0.034	0.085	0.490	0.297	3.764	4.166	0.320	0.428	0.829	0.329	0.384	0.427	0.255	0.375	0.552	0.469	0.539	0.262	0.225	0.319	0.345	0.493	0.284	0.518	0.616	0.531	0.059	0.095	0.066	0.027	0.284	0.101	0.038	0.221	0.050	0.071
6829	chr6	57158884	57168061	+	0	NA	Intergenic	Intergenic	-16131	NM_001282488	5558	Hs.654580	NM_000947	ENSG00000146143	PRIM2	PRIM2A|p58	primase (DNA) subunit 2	protein-coding	0.951	0.849	nan	0.203	0.186	0.191	0.139	0.985	0.299	0.085	0.118	0.221	0.411	0.035	0.122	0.335	0.257	0.174	0.243	0.304	0.302	0.233	0.066	0.217	0.290	5.182	4.832	0.744	0.699	0.696	0.342	0.120	0.150	0.064	0.106	0.336	0.466	0.365	0.442	0.815	0.123	0.021	0.018	0.139	0.221	0.032	0.045	0.021	0.046
2100	chr12	98735408	98755213	+	0	NA	Intergenic	Intergenic	105613	NR_033801	121456	Hs.620643	NR_033801	ENSG00000227825	SLC9A7P1	-	solute carrier family 9 member 7 pseudogene 1	pseudo	0.952	0.880	0.725	0.093	0.346	0.211	1.680	0.198	0.157	0.198	0.191	0.272	nan	0.066	0.130	0.384	0.235	0.430	0.680	0.525	0.621	5.735	1.849	0.269	0.193	0.630	nan	0.333	nan	0.368	0.192	0.192	0.195	0.512	0.539	0.273	0.607	2.095	1.157	0.068	0.102	0.077	0.044	1.680	0.272	0.015	0.260	0.065	0.155
1006	chr10	5527709	5570759	+	0	NA	Intergenic	Intergenic	-7701	NM_017422	51806	Hs.180142	NM_017422	ENSG00000178372	CALML5	CLSP	calmodulin like 5	protein-coding	0.477	2.319	1.217	2.055	0.258	0.171	0.217	0.157	0.153	0.134	0.064	1.887	4.301	0.058	0.060	0.440	0.490	0.216	0.442	0.727	0.713	1.450	0.400	0.186	0.203	0.098	0.220	2.995	2.931	0.157	0.080	0.349	0.378	0.174	0.185	0.255	0.497	0.684	0.483	1.568	0.534	0.035	0.030	0.217	1.887	0.052	0.127	0.113	0.098
7025	chr6	147178701	147196187	+	0	NA	intron (NR_034115, intron 7 of 10)	intron (NR_034115, intron 7 of 10)	-62484	NR_003954	729176	Hs.486708	NR_003954		KATNBL1P6	-	katanin regulatory subunit B1 like 1 pseudogene 6	pseudo	nan	0.934	nan	0.238	0.562	0.345	3.431	0.209	0.073	0.277	0.166	0.330	0.680	0.074	0.135	0.400	0.233	0.905	0.508	0.831	0.722	3.129	0.915	0.309	0.271	0.432	0.673	0.334	0.331	0.989	0.678	0.147	0.290	0.430	0.686	0.446	0.866	1.418	0.761	0.016	0.178	0.066	0.055	3.431	0.330		0.594	0.091	0.194
5773	chr3	191046124	191049568	+	0	NA	intron (NM_178335, intron 1 of 11)	intron (NM_178335, intron 1 of 11)	479	NM_198152	257313	Hs.518492	NM_198152	ENSG00000188958	UTS2B	U2B|URP|UTS2D	urotensin 2B	protein-coding	nan	3.515	6.161	6.420	5.360	2.355	3.124	7.200	0.426	3.820	1.668	4.871	12.717	2.736	0.048	6.417	6.554	14.200	14.634	11.802	9.929	16.003	7.636	11.092	11.840	4.179	4.909	7.264	10.102	8.885	9.271	2.651	5.696	2.952	2.711	6.112	4.615	3.549	2.493	1.692	2.415	0.388	1.885	3.124	4.871	0.852	1.585	1.505	1.870
3813	chr18	49568438	49589473	+	0	NA	Intergenic	Intergenic	-287587	NM_005215	1630	Hs.162025	NM_005215	ENSG00000187323	DCC	CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1	DCC netrin 1 receptor	protein-coding	nan	0.907	0.842	0.083	0.289	0.152	0.913	0.053	0.023	0.049	0.087	0.074	0.250	0.026	0.051	0.381	0.229	0.126	0.209	0.503	0.669	5.109	1.459	0.066	0.078	0.244	0.319	0.273	0.266	1.342	0.935	0.136	0.132	1.587	1.479	0.492	nan	1.857	1.170	0.013	0.097	0.451	0.212	0.913	0.074	0.082	0.015	0.057	0.158
996	chr10	3505334	3551109	+	0	NA	intron (NR_131187, intron 1 of 1)	intron (NR_131187, intron 1 of 1)	167334	NR_131187	105376360	Hs.212226	NR_131187		LOC105376360	-	uncharacterized LOC105376360	ncRNA	0.375	1.014	0.599	0.156	0.505	0.270	0.870	2.684	0.347	0.134	0.072	0.298	0.420	6.356	0.198	0.764	0.861	1.660	4.843	0.246	0.366	2.260	1.461	0.155	0.181	0.113	0.193	0.413	0.666	0.124	0.056	0.168	0.237	0.227	0.462	0.135	0.198	0.460	0.408	0.012	0.107	0.048	0.031	0.870	0.298	0.030	0.031	0.041	0.038
4596	chr2	172914181	172969334	+	0	NA	intron (NM_199227, intron 6 of 9)	intron (NM_199227, intron 6 of 9)	-8451	NM_178120	1745	Hs.407015	NM_178120	ENSG00000144355	DLX1	-	distal-less homeobox 1	protein-coding	1.373	0.907	1.100	1.060	12.644	6.522	2.280	0.979	0.181	0.534	0.394	0.988	1.770	1.605	0.102	0.316	0.259	0.809	1.536	0.895	0.819	5.067	1.848	0.513	0.530	1.076	1.552	0.966	1.282	1.102	1.073	0.539	0.709	2.145	0.938	0.304	0.597	2.838	1.489	0.190	0.142	0.145	0.036	2.280	0.988	0.301	0.245	0.245	0.100
1840	chr12	12670577	12677597	+	0	NA	5' UTR (NM_030640, exon 2 of 7)	5' UTR (NM_030640, exon 2 of 7)	41361	NM_030640	80824	Hs.536535	NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding	1.110	1.177	1.089	2.221	1.479	0.549	0.308	0.097	0.024	1.912	0.529	2.109	0.494	0.134	0.091	0.366	0.222	0.330	0.794	nan	1.236	11.051	5.558	0.756	0.671	0.856	1.218	1.339	0.922	0.338	0.161	0.256	0.275	1.130	2.054	0.388	0.717	2.921	1.202	0.071	0.317	0.152	0.067	0.308	2.109	0.014	0.159	0.070	0.282
3656	chr18	8608820	8630326	+	0	NA	intron (NM_001025300, intron 1 of 5)	intron (NM_001025300, intron 1 of 5)	10130	NM_001025300	201475	Hs.270074	NM_001025300	ENSG00000206418	RAB12	-	RAB12, member RAS oncogene family	protein-coding	1.442	1.531	2.600	3.803	1.563	0.789	0.315	0.721	0.138	1.456	0.820	1.517	nan	0.393	0.140	1.417	1.715	2.110	2.877	2.216	2.311	nan	0.749	1.575	1.640	1.487	nan	1.834	2.580	nan	2.194	0.767	1.365	3.008	5.285	0.849	nan	nan	1.399	1.228	0.966	0.673	0.997	0.315	1.517	0.417	0.722	0.456	0.369
2069	chr12	88534248	88543042	+	0	NA	intron (NM_181783, intron 1 of 13)	intron (NM_181783, intron 1 of 13)	2572	NM_181783	160418	Hs.331268	NM_181783	ENSG00000139324	TMTC3	LIS8|SMILE	transmembrane and tetratricopeptide repeat containing 3	protein-coding	1.379	1.902	0.925	1.151	1.197	0.657	4.741	1.197	0.171	1.247	0.690	1.131	4.335	0.863	0.095	1.382	1.168	1.625	2.211	2.429	2.430	8.680	2.201	4.896	5.050	1.932	2.553	2.364	3.438	1.613	1.598	0.687	1.763	5.660	7.560	1.868	1.671	2.126	1.401	0.526	1.019	0.956	0.363	4.741	1.131	0.309	0.643	0.423	0.591
629	chr1	163439594	163447920	+	0	NA	Intergenic	Intergenic	-50776	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3 subunit J pseudogene	pseudo	1.106	nan	1.567	3.073	5.189	2.227	0.445	0.117	0.115	0.961	0.824	5.079	2.395	0.063	0.124	0.513	0.382	0.595	0.371	6.048	nan	4.686	1.882	0.143	0.174	0.415	0.698	3.918	nan	1.771	1.356	1.237	1.242	3.376	3.679	2.442	7.214	1.325	0.776	0.640	7.370	0.925	0.201	0.445	5.079	0.036	1.889	4.488	1.475
372	chr1	77854328	77888259	+	0	NA	intron (NM_174858, intron 6 of 13)	LTR16D|LTR|ERVL	123006	NM_012093	26289	Hs.559718	NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding	nan	0.773	1.091	0.081	0.341	0.166	0.751	0.304	0.126	0.197	0.161	0.104	0.303	0.061	0.122	0.450	0.345	4.264	5.983	0.332	nan	1.413	0.408	0.324	0.361	1.037	nan	0.497	0.546	0.458	0.319	0.250	0.521	0.515	0.514	0.418	0.846	0.715	0.605	0.032	0.045	0.210	0.170	0.751	0.104	0.047	0.060	0.110	0.208
4525	chr2	142794269	142814624	+	0	NA	intron (NM_018557, intron 1 of 90)	intron (NM_018557, intron 1 of 90)	84824	NM_018557	53353	Hs.656461	NM_018557	ENSG00000168702	LRP1B	LRP-1B|LRP-DIT|LRPDIT	LDL receptor related protein 1B	protein-coding	0.788	nan	0.974	0.099	0.242	0.126	0.505	0.055	0.079	0.061	0.109	0.059	0.311	0.062	0.078	0.293	0.200	2.480	2.092	0.184	0.250	0.081	0.058	0.141	0.130	4.241	4.629	0.239	0.285	0.557	0.284	0.137	0.274	0.308	0.301	0.432	0.607	0.083	0.153	0.032	0.026	0.237	0.171	0.505	0.059	0.028	0.047	0.039	0.097
1661	chr11	115151678	115199827	+	0	NA	intron (NM_001098517, intron 1 of 8)	intron (NM_001098517, intron 1 of 8)	-28544	NR_135108	105369509	Hs.736064	NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA	0.837	1.112	0.737	0.497	2.964	1.515	0.387	0.040	0.060	0.806	0.616	0.837	0.699	0.038	0.104	1.165	nan	0.343	0.620	1.347	1.657	1.635	1.117	0.153	0.113	1.688	nan	1.178	1.598	0.720	0.420	4.168	3.732	1.579	2.637	0.603	1.584	1.370	0.884	0.697	1.917	0.531	0.369	0.387	0.837	0.338	0.263	4.628	0.307
7357	chr7	81858242	81930116	+	0	NA	intron (NM_000722, intron 3 of 38)	intron (NM_000722, intron 3 of 38)	178943	NM_000722	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding	1.127	0.845	0.938	0.240	1.496	0.685	0.899	0.190	0.134	0.870	0.609	0.385	0.560	0.092	0.133	0.959	1.054	0.388	0.341	0.988	1.090	3.125	1.249	0.128	0.133	2.364	2.554	0.536	0.549	0.938	0.611	0.208	0.316	2.889	4.072	0.895	nan	1.627	0.860	0.623	0.144	0.855	0.787	0.899	0.385	0.237	0.075	0.082	0.335
3041	chr16	4700817	4718563	+	0	NA	intron (NM_001142291, intron 5 of 15)	intron (NM_001142291, intron 5 of 15)	-11629	NR_106827	102466731		NR_106827	ENSG00000276641	MIR6769A	hsa-mir-6769a	microRNA 6769a	ncRNA	0.966	nan	2.355	1.517	0.321	0.141	0.492	0.108	0.181	0.528	0.376	0.809	1.708	0.055	0.079	0.351	0.405	0.194	0.273	2.125	2.038	nan	0.665	0.423	0.470	0.380	nan	1.458	1.732	0.642	0.685	0.183	0.264	1.500	1.578	0.325	0.517	1.234	0.738	3.696	0.154	0.416	0.130	0.492	0.809	0.499	0.205	0.022	0.119
7351	chr7	81285799	81342124	+	0	NA	intron (NR_126025, intron 1 of 10)	intron (NR_126025, intron 1 of 10)	6761	NR_126025	100128317	Hs.571267	NR_126025	ENSG00000233491	LOC100128317	-	uncharacterized LOC100128317	ncRNA	0.968	0.698	0.857	0.123	0.380	0.152	0.252	0.597	0.117	0.125	0.176	0.142	0.272	0.174	0.166	0.485	0.332	0.268	0.347	0.320	0.476	0.164	0.104	0.164	0.155	8.711	9.499	0.521	0.348	0.660	0.259	0.190	0.372	0.208	0.296	0.475	nan	0.607	0.626	0.141	0.095	0.036	0.140	0.252	0.142	0.182	0.867	0.104	0.212
5137	chr21	43121441	43148913	+	0	NA	intron (NR_027272, intron 2 of 5)	intron (NR_027272, intron 2 of 5)	758	NR_027272	150135	Hs.350679	NM_152506	ENSG00000236384	LINC00479	C21orf129|PRED76	long intergenic non-protein coding RNA 479	ncRNA	nan	0.836	1.081	0.532	0.471	0.186	0.290	0.231	0.070	0.278	0.101	0.408	1.105	0.035	0.071	0.454	0.541	1.173	5.255	0.418	0.425	nan	0.485	0.369	0.412	0.124	nan	2.314	2.379	0.472	0.254	0.492	0.540	0.392	0.428	0.238	0.277	0.792	0.798	0.538	0.108	0.097	0.035	0.290	0.408	0.025	0.100	0.306	0.058
8380	chrX	40001128	40036982	+	0	NA	intron (NM_001123384, intron 1 of 13)	intron (NM_001123384, intron 1 of 13)	17527	NM_001123383	54880	Hs.659681	NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding	3.618	3.066	3.177	3.294	2.127	1.171	2.467	1.323	0.175	2.389	1.002	3.227	4.010	1.619	0.054	1.221	1.396	2.131	3.465	5.866	4.812	3.258	1.052	3.169	3.181	0.772	1.040	4.459	6.028	4.734	6.376	1.571	1.887	2.588	1.975	1.445	2.620	1.374	0.752	3.530	1.740	0.563	2.130	2.467	3.227	0.979	1.366	1.110	1.289
1160	chr10	80281834	80341611	+	0	NA	Intergenic	Intergenic	284637	NR_073447	414243	Hs.55047	NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA	0.675	1.565	1.277	0.717	1.249	0.631	0.238	0.068	0.030	0.514	0.251	3.276	4.006	0.034	0.062	0.571	0.615	0.309	0.298	1.953	1.847	4.106	1.680	0.283	0.290	0.441	0.615	3.195	2.712	0.257	0.123	0.289	0.361	0.524	0.471	0.277	0.470	1.013	0.544	2.468	0.507	0.070	0.105	0.238	3.276	0.335	0.268	0.122	0.132
869	chr1	217249346	217264337	+	0	NA	intron (NM_001134285, intron 1 of 8)	MIR3|SINE|MIR	6146	NM_206595	2104	Hs.444225	NM_001438	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen related receptor gamma	protein-coding	0.879	2.156	1.555	2.893	0.931	0.449	0.571	0.352	0.195	1.705	0.880	0.824	nan	0.050	0.083	0.965	1.820	0.728	0.999	1.690	1.864	nan	1.122	0.555	0.559	0.605	nan	2.958	2.384	0.685	0.584	1.151	2.405	2.271	1.656	0.238	0.346	2.756	1.471	0.019	0.160	0.517	0.122	0.571	0.824	0.052	2.643	2.085	0.082
5513	chr3	123749534	123754326	+	0	NA	Intergenic	CpG	-40913	NR_133917	54763	Hs.567516	NM_017578	ENSG00000065371	ROPN1	CT91|ODF6|RHPNAP1|ROPN1A|ropporin	rhophilin associated tail protein 1	protein-coding	7.065	nan	5.164	4.154	4.027	2.439	1.503	0.445	0.233	2.246	0.962	5.999	5.858	0.497	0.037	4.223	5.433	1.165	1.861	11.959	9.803	12.106	4.901	1.285	1.264	2.548	nan	3.746	4.676	11.884	16.370	0.498	0.768	2.563	1.569	6.290	8.367	2.624	1.699	3.091	4.528	0.849	5.159	1.503	5.999	1.513	0.696	0.102	2.870
5886	chr4	48776493	48782346	+	0	NA	intron (NM_015030, intron 1 of 63)	intron (NM_015030, intron 1 of 63)	2897	NM_015030	285527	Hs.595553	NM_015030	ENSG00000075539	FRYL	AF4p12|KIAA0826|MOR2	FRY like transcription coactivator	protein-coding	3.421	nan	nan	4.240	2.821	1.371	1.653	2.833	0.274	2.693	1.336	2.638	4.515	1.747	0.103	4.675	5.023	5.093	6.752	3.919	3.480	4.322	1.314	4.990	4.671	3.203	4.182	2.325	3.865	5.620	6.198	2.520	5.859	1.425	1.622	5.234	6.997	1.750	0.905	1.702	4.864	0.671	6.530	1.653	2.638	0.482	0.795	1.933	2.845
5035	chr20	61197452	61206043	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	39628	NR_029676	406923		NR_029676	ENSG00000174407	MIR133A2	MIRN133A2|mir-133a-2	microRNA 133a-2	ncRNA	1.082	3.847	1.629	0.200	0.468	0.167	0.382	0.138	0.037	0.874	0.235	0.471	4.471	0.063	0.120	2.417	nan	0.168	0.161	0.845	0.864	0.294	0.056	0.342	0.334	0.111	0.457	0.176	0.245	0.533	0.356	3.452	5.399	0.585	0.890	0.084	0.198	2.327	1.554	10.441	0.742	0.087	0.046	0.382	0.471	0.203	1.591	5.777	0.030
4114	chr19	47995804	48019652	+	0	NA	intron (NM_003827, intron 1 of 10)	intron (NM_003827, intron 1 of 10)	10787	NR_038457	8775	Hs.126938	NM_003827	ENSG00000105402	NAPA	SNAPA	NSF attachment protein alpha	protein-coding	2.166	1.074	6.699	0.640	0.596	0.383	0.707	0.780	0.229	0.406	0.248	0.608	0.885	0.598	0.117	0.788	1.037	1.032	1.675	1.877	2.158	1.270	0.488	1.962	2.091	3.564	4.581	1.201	1.789	5.276	5.647	0.745	1.062	0.630	0.914	1.739	3.182	1.298	0.684	0.633	0.783	0.126	0.273	0.707	0.608	1.648	0.735	0.246	1.016
5134	chr21	42426867	42441251	+	0	NA	Intergenic	L2a|LINE|L2	85932	NR_024100	284835	Hs.106234	NR_024100	ENSG00000226496	LINC00323	C21orf130|NCRNA00323|PRED42	long intergenic non-protein coding RNA 323	ncRNA	nan	0.789	1.404	0.050	1.201	0.717	0.461	0.061	0.034	0.229	0.160	0.703	2.775	0.033	0.056	0.427	0.299	0.255	0.532	0.736	0.764	nan	0.728	0.106	0.079	0.320	nan	0.319	0.438	0.523	0.308	0.301	0.239	3.371	3.913	0.221	0.384	2.723	1.446	0.421	0.188	0.914	0.072	0.461	0.703	0.020	0.042	0.048	0.057
4888	chr20	22346374	22396370	+	0	NA	Intergenic	Intergenic	29909	NR_027090	284788	Hs.651993	NR_027089	ENSG00000204684	LOC284788	-	uncharacterized LOC284788	ncRNA	0.686	1.540	nan	0.766	1.444	0.763	0.504	0.111	0.084	0.566	0.328	0.419	1.772	0.035	0.086	0.483	0.276	0.170	0.262	0.994	0.977	3.973	1.386	0.109	0.103	0.177	0.280	2.232	1.676	0.326	0.113	0.221	0.373	2.667	3.199	0.103	0.228	1.900	1.028	0.015	0.153	0.748	0.017	0.504	0.419	0.018	1.682	0.149	0.028
1697	chr11	119926837	119944408	+	0	NA	Intergenic	MER21C|LTR|ERVL	63999	NM_001330382	23650	Hs.504115	NM_012101	ENSG00000137699	TRIM29	ATDC	tripartite motif containing 29	protein-coding	0.873	0.555	0.891	0.054	0.340	0.201	0.422	0.034	0.028	0.097	0.107	0.434	0.319	0.068	0.108	3.015	nan	0.369	0.822	0.771	0.927	0.561	0.201	0.272	0.307	0.294	nan	0.227	0.341	1.071	0.879	2.513	4.092	0.146	0.217	0.582	2.822	1.073	0.750	0.964	0.264	0.027	0.045	0.422	0.434	0.161	0.029	3.426	0.853
3828	chr18	54575810	54587776	+	0	NA	intron (NM_052834, intron 20 of 26)	intron (NM_052834, intron 20 of 26)	157557	NR_048536	100885779	Hs.742426	NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA	nan	1.060	0.900	0.688	0.618	0.361	1.853	0.069	0.068	0.339	0.147	0.432	0.749	0.035	0.081	0.517	0.489	0.273	0.327	1.166	1.269	1.577	0.513	0.482	0.444	0.544	0.541	0.761	0.952	0.336	0.259	0.183	0.403	2.994	4.766	0.278	0.672	nan	1.798	0.061	0.253	1.062	0.153	1.853	0.432	0.032	0.128	0.025	0.134
7542	chr7	151423470	151456625	+	0	NA	intron (NM_016203, intron 3 of 15)	intron (NM_016203, intron 3 of 15)	-6647	NM_001304527	51422	Hs.647072	NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding	0.899	0.782	nan	0.204	0.363	0.131	0.865	0.674	0.151	0.250	0.209	0.249	0.805	3.229	0.214	0.497	0.791	0.427	0.953	0.686	0.542	0.838	0.169	0.265	0.336	0.424	0.696	0.369	0.523	0.654	0.568	0.539	0.601	1.136	1.945	0.095	0.248	1.000	0.766	0.653	0.629	0.315	0.091	0.865	0.249	0.246	0.067	0.232	0.029
6159	chr5	7206521	7218367	+	0	NA	Intergenic	AluY|SINE|Alu	57023	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA	0.705	1.404	1.399	0.282	1.131	0.501	0.236	0.185	0.164	0.955	0.456	3.975	1.663	0.018	0.121	0.470	0.290	0.150	nan	5.715	8.621	0.083	0.040	0.085	0.103	0.206	0.441	nan	0.519	nan	0.467	0.213	0.216	0.871	0.700	0.187	0.235	1.578	nan	2.923	0.227	0.321	0.047	0.236	3.975	0.082	0.052	0.117	0.092
7390	chr7	95827299	95852552	+	0	NA	intron (NR_027662, intron 3 of 16)	intron (NR_027662, intron 3 of 16)	9143	NR_030322	693176		NR_030322	ENSG00000208025	MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA	nan	0.646	nan	0.151	0.701	0.386	0.310	0.160	0.159	0.236	0.207	0.327	0.311	0.137	0.163	0.536	0.349	3.306	3.739	0.311	0.439	0.844	0.292	0.348	0.327	0.938	1.277	0.274	0.265	0.449	0.270	0.229	0.365	0.739	0.974	0.349	nan	0.986	0.675	0.060	0.161	0.185	0.162	0.310	0.327	0.074	0.064	0.097	0.153
991	chr10	1765201	1782959	+	0	NA	intron (NM_018702, intron 1 of 9)	intron (NM_018702, intron 1 of 9)	5590	NM_018702	105	Hs.586663	NM_018702	ENSG00000185736	ADARB2	ADAR3|RED2	adenosine deaminase, RNA specific B2 (inactive)	protein-coding	0.867	0.511	1.019	0.421	1.018	0.357	0.410	0.105	0.109	1.637	1.034	3.462	1.167	0.024	0.064	2.630	3.621	0.129	0.218	2.472	2.625	0.220	0.148	0.429	0.431	0.125	0.199	1.733	2.976	0.209	0.149	3.116	6.829	0.036	0.033	0.284	0.400	0.662	0.532	0.163	0.526	0.022	0.366	0.410	3.462	0.286	0.813	4.168	0.046
4773	chr2	237680000	237704923	+	0	NA	Intergenic	L2a|LINE|L2	214081	NM_020311	57007	Hs.471751	NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding	1.171	nan	1.119	0.218	0.338	0.142	0.499	0.138	0.045	0.013	0.087	0.289	0.581	0.039	0.130	1.392	1.761	0.264	0.735	0.567	0.829	0.133	0.079	0.353	0.357	0.773	1.242	0.407	nan	0.683	0.423	0.473	0.680	0.075	0.140	0.243	0.319	0.128	0.214	2.603	0.100	0.069	0.042	0.499	0.289	0.160	0.114	0.603	0.075
3535	chr17	71712822	71722599	+	0	NA	Intergenic	AluSx3|SINE|Alu	-16283	NM_001278587	100134391	Hs.694655	NM_001278587		LOC100134391	-	uncharacterized LOC100134391	protein-coding	1.359	1.182	3.785	1.557	0.877	0.689	0.864	0.132	0.197	0.611	0.549	2.271	4.325	0.067	0.074	3.237	3.775	0.250	0.355	4.305	4.626	1.870	0.570	0.141	0.117	nan	0.744	9.961	7.053	1.443	0.787	0.390	0.620	0.777	0.569	0.487	0.854	nan	1.370	2.032	1.987	0.115	0.244	0.864	2.271		1.847	0.193	0.100
2348	chr13	77357497	77375467	+	0	NA	Intergenic	AluSc8|SINE|Alu	94058	NM_138444	115207	Hs.644125	NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding	nan	0.997	1.110	0.482	1.803	0.922	0.778	0.136	0.090	0.359	0.208	0.126	0.477	0.018	0.069	0.693	0.448	0.440	0.550	0.403	0.471	nan	4.093	0.104	0.131	0.178	0.250	0.548	0.952	nan	0.354	0.170	0.334	1.043	0.644	0.845	nan	0.301	0.182	0.019	0.104	0.132	0.142	0.778	0.126	0.141	0.356	0.050	0.517
615	chr1	161122628	161130321	+	0	NA	intron (NM_016406, intron 1 of 5)	AluSx|SINE|Alu	-2780	NM_001319847	27005	Hs.8015	NM_012475	ENSG00000143258	USP21	USP16|USP23	ubiquitin specific peptidase 21	protein-coding	5.352	nan	4.464	3.790	3.990	2.282	4.767	2.313	0.399	2.894	1.396	4.502	7.735	3.342	0.193	6.269	6.277	6.064	8.862	7.704	nan	8.123	5.502	7.501	7.636	4.879	5.942	7.164	nan	5.451	4.873	7.899	8.981	6.062	6.053	6.803	6.303	3.646	2.251	2.718	4.720	0.808	1.506	4.767	4.502	1.022	2.519	2.612	1.683
2246	chr13	26432623	26444109	+	0	NA	intron (NM_016529, intron 33 of 36)	intron (NM_016529, intron 33 of 36)	186832	NM_001007538	387914	Hs.433791	NM_001007538	ENSG00000180730	SHISA2	C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa	shisa family member 2	protein-coding	0.679	0.844	0.732	0.191	0.253	0.090	0.067	0.118	0.083	0.098	0.145	0.351	0.363	0.029	0.085	0.861	0.792	8.463	nan	0.396	0.609	0.146	0.086	0.073	0.082	0.158	0.327	0.771	0.662	0.561	0.231	0.492	0.797	0.033	0.062	0.405	0.710	1.216	0.727	0.044	0.085		0.042	0.067	0.351	0.025	0.071	0.096	0.129
476	chr1	119582718	119596047	+	0	NA	promoter-TSS (NR_126447)	promoter-TSS (NR_126447)	-646	NR_126447	104472716	Hs.689536	NR_126447		WARS2-IT1	-	WARS2 intronic transcript 1	ncRNA	nan	0.838	1.083	0.121	0.248	0.126	0.126	0.251	0.181	0.059	0.049	0.072	0.336	0.049	0.170	0.387	0.444	0.314	0.401	0.292	nan	0.179	0.113	0.545	0.609	3.748	4.374	0.297	0.303	0.329	0.128	0.692	0.673	0.057	0.081	0.436	1.058	0.717	0.502	0.047	0.093	0.012	0.139	0.126	0.072	0.036	0.046	0.329	0.326
1198	chr10	103453086	103455515	+	0	NA	exon (NM_022039, exon 1 of 9)	exon (NM_022039, exon 1 of 9)	443	NR_136613	6468	Hs.500822	NM_022039	ENSG00000107829	FBXW4	DAC|FBW4|FBWD4|SHFM3|SHSF3	F-box and WD repeat domain containing 4	protein-coding	7.764	5.258	8.439	4.699	8.793	5.288	5.229	4.827	0.594	3.613	1.158	11.816	10.647	5.218	0.064	14.315	14.356	17.160	20.684	15.208	18.366	15.721	10.550	17.787	17.626	5.160	6.829	18.163	27.066	6.969	7.610	9.147	12.872	6.579	5.063	6.314	4.846	4.365	2.232	2.570	4.197	0.985	3.613	5.229	11.816	1.751	5.647	1.683	1.231
1626	chr11	110580514	110585087	+	0	NA	promoter-TSS (NM_001258415)	promoter-TSS (NM_001258415)	-27	NM_001258415	57569	Hs.6136	NM_020809	ENSG00000137727	ARHGAP20	RARHOGAP	Rho GTPase activating protein 20	protein-coding	1.969	2.063	1.894	0.612	0.810	0.316	2.414	1.159	0.035	0.410	0.753	1.045	7.440	0.071	0.135	8.680	nan	1.932	2.096	4.549	4.019	2.054	0.605	9.838	9.804	2.828	nan	1.075	2.186	1.017	1.618	5.548	12.232	4.337	2.776	1.469	2.540	1.202	0.705	8.002	0.115	2.068	0.863	2.414	1.045	0.233	0.054	4.896	0.836
7566	chr7	158023353	158036582	+	0	NA	intron (NM_001308267, intron 2 of 21)	LTR5_Hs|LTR|ERVK	295538	NR_030325	693180		NR_030325	ENSG00000207637	MIR595	MIRN595|hsa-mir-595	microRNA 595	ncRNA	0.683	1.101	nan	0.404	1.353	0.498	0.618	0.063	0.085	0.249	0.207	1.248	3.276	0.065	0.159	0.357	0.215	0.133	0.173	0.727	0.586	0.472	0.165	0.070	0.062	0.095	0.215	1.322	3.208	0.441	0.321	0.183	0.278	0.304	0.652	0.346	0.478	0.825	0.669	6.370	0.857	0.044	0.055	0.618	1.248	0.066	0.185	0.035	0.139
2141	chr12	110455167	110463852	+	0	NA	intron (NM_033121, intron 6 of 14)	AluSx1|SINE|Alu	22274	NM_033121	88455	Hs.528703	NM_033121	ENSG00000076513	ANKRD13A	ANKRD13|NY-REN-25	ankyrin repeat domain 13A	protein-coding	nan	nan	4.037	0.264	0.357	0.091	0.206	0.328	0.149	0.372	0.207	0.215	0.295	0.025	0.135	0.880	0.960	0.383	0.653	nan	nan	nan	0.230	0.416	0.398	2.218	3.026	nan	nan	7.087	8.317	0.312	0.459	1.384	2.426	4.119	8.754	nan	1.188	0.064	0.161	0.264	0.439	0.206	0.215	1.495	0.094	0.103	3.790
6146	chr5	3917965	3922946	+	0	NA	Intergenic	L1MA3|LINE|L1	324287	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding	0.407	0.844	0.972	0.136	0.215	0.162	0.154	0.222	0.130	0.188	0.269	0.128	0.543		0.073	4.058	2.759	8.822	nan	0.264	0.404	0.063	0.102	0.037	0.066	0.216	0.312	nan	0.151	nan	0.199	1.811	3.425	0.068	0.061	0.091	0.158	0.247	nan	0.033	0.054		0.052	0.154	0.128		0.062	1.264	0.024
7705	chr8	62199718	62205810	+	0	NA	intron (NM_173519, intron 1 of 5)	intron (NM_173519, intron 1 of 5)	2239	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding	5.564	1.235	1.137	0.149	0.346	0.314	0.669	0.061	0.054	0.154	0.094	1.338	4.845	0.036	0.051	0.764	0.941	0.129	0.188	3.229	2.917	2.868	0.664	0.053	0.080	3.582	nan	0.292	0.302	nan	9.938	0.350	0.613	2.382	2.606	1.932	5.218	1.260	1.022	0.073	0.088	0.673	0.665	0.669	1.338	16.859	1.296	0.024	0.323
2854	chr15	41407118	41411601	+	0	NA	promoter-TSS (NR_104038)	promoter-TSS (NR_104038)	-915	NR_104038	54617	Hs.292949	NM_017553	ENSG00000128908	INO80	INO80A|INOC1|hINO80	INO80 complex subunit	protein-coding	4.264	2.731	nan	3.391	6.176	2.869	5.813	3.686	0.215	2.479	1.100	6.186	6.558	3.511	0.112	5.980	6.369	9.229	10.543	6.189	5.423	5.014	3.342	12.664	12.870	3.428	nan	6.898	12.219	10.855	11.452	4.754	7.882	6.428	7.250	7.974	5.462	3.309	2.045	2.512	3.566	1.492	2.450	5.813	6.186	2.250	2.759	2.469	2.456
7140	chr7	5452716	5471765	+	0	NA	intron (NM_001080495, intron 1 of 29)	CpG-23978	937	NM_001080495	84629	Hs.520638	NM_001013722	ENSG00000182095	TNRC18	CAGL79|TNRC18A	trinucleotide repeat containing 18	protein-coding	11.357	5.430	8.828	4.964	7.087	3.715	5.507	5.049	0.610	4.395	2.080	12.620	nan	12.187	0.287	10.309	11.303	9.113	nan	10.384	8.630	nan	1.362	13.416	13.978	5.111	6.954	nan	7.220	3.700	3.748	5.977	11.571	4.202	4.281	1.629	3.563	2.399	1.455	8.123	5.857	1.316	3.656	5.507	12.620	1.939	5.188	4.788	1.021
6202	chr5	19973429	19982504	+	0	NA	intron (NM_001291956, intron 4 of 14)	intron (NM_001291956, intron 4 of 14)	10387	NM_001167667	1016	Hs.317632	NM_004934	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18	protein-coding	nan	nan	nan	0.314	0.133	0.054	0.126	0.295	0.187	0.311	0.308	0.106	nan	0.047	0.119	0.456	0.272	0.254	0.170	0.375	0.549	0.140	0.086	0.139	0.110	7.121	7.244	0.472	0.446	2.446	1.339	0.078	0.205	0.117	0.175	0.986	nan	0.910	0.687	0.037	0.126	0.031		0.126	0.106	0.084	0.122	0.058	0.842
6122	chr5	565221	617871	+	0	NA	Intergenic	L1MEg|LINE|L1	20779	NR_103444	100996325	Hs.575249	NR_103444		LOC100996325	-	uncharacterized LOC100996325	ncRNA	0.662	2.093	1.263	1.963	0.778	0.449	0.570	0.220	0.159	0.522	0.388	3.308	2.952	0.173	0.094	0.527	0.442	0.369	nan	2.375	2.296	0.940	0.275	0.196	0.214	0.399	0.719	nan	2.508	nan	0.438	0.282	0.413	0.708	0.769	0.129	0.199	2.061	nan	1.197	0.969	0.088	0.259	0.570	3.308	0.295	0.382	0.086	0.042
1781	chr12	5017674	5024850	+	0	NA	exon (NM_000217, exon 2 of 2)	exon (NM_000217, exon 2 of 2)	2189	NM_000217	3736	Hs.416139	NM_000217	ENSG00000111262	KCNA1	AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1	potassium voltage-gated channel subfamily A member 1	protein-coding	0.630	nan	nan	1.292	2.074	1.273	0.820	0.032	0.069	4.865	2.551	5.498	5.662	0.061	0.080	0.128	0.067	0.088	0.089	nan	1.495	3.021	1.856	0.142	0.129	1.993	2.651	0.169	0.100	0.271	0.158	0.095	0.181	2.842	2.298	0.103	nan	1.907	0.922	0.031	1.248	1.478	0.122	0.820	5.498		0.014	0.014	0.053
7506	chr7	139042594	139047546	+	0	NA	intron (NM_016019, intron 1 of 9)	CpG	478	NM_001270643	51631	Hs.731488	NM_016019	ENSG00000146963	LUC7L2	CGI-59|CGI-74|LUC7B2	LUC7 like 2, pre-mRNA splicing factor	protein-coding	nan	nan	nan	6.633	8.728	4.433	4.966	4.445	0.906	5.602	2.713	9.424	11.533	9.285	0.334	7.996	8.142	8.883	11.627	11.398	11.140	11.375	5.985	30.495	32.283	5.402	nan	7.378	12.548	nan	11.796	9.264	13.279	9.370	11.484	9.556	8.660	5.610	nan	8.920	7.970	2.121	4.048	4.966	9.424	2.347	3.375	4.667	2.239
7109	chr6	170188418	170212372	+	0	NA	intron (NR_026780, intron 2 of 2)	intron (NR_026780, intron 2 of 2)	-1474	NR_026781	401288	Hs.556095	NM_207502	ENSG00000229214	LINC00242	C6orf122|NCRNA00242|dJ266L20.5	long intergenic non-protein coding RNA 242	ncRNA	nan	0.841	nan	0.622	0.534	0.265	1.342	0.055	0.047	0.223	0.155	0.518	1.465	0.122	0.074	0.998	1.004	0.567	0.981	nan	1.242	nan	1.232	0.672	0.795	0.158	0.342	nan	1.700	0.749	0.613	0.516	0.502	0.714	0.789	0.174	0.367	0.746	0.558	3.837	0.367	0.104	0.082	1.342	0.518	0.137	1.003	0.168	0.047
2157	chr12	116177200	116212959	+	0	NA	Intergenic	Intergenic	391380	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA	nan	nan	0.487	0.205	0.219	0.146	0.225	0.061	0.069	0.053	0.098	0.268	1.147	0.028	0.105	0.262	0.128	0.113	0.151	nan	nan	nan	0.086	0.583	0.608	0.192	0.319	nan	nan	0.286	0.089	0.208	0.260	0.061	0.118	0.322	0.561	nan	0.387	6.433	0.444	0.032	0.047	0.225	0.268	0.008	0.065	0.041	0.079
7085	chr6	160389155	160412471	+	0	NA	intron (NM_000876, intron 1 of 47)	L2|LINE|L2	10682	NM_000876	3482	Hs.487062	NM_000876	ENSG00000197081	IGF2R	CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI	insulin like growth factor 2 receptor	protein-coding	1.649	nan	1.905	3.247	0.737	0.392	2.211	1.038	0.082	0.216	0.109	0.831	2.933	0.595	0.111	1.147	1.421	1.436	2.226	3.000	2.210	2.880	0.939	1.590	1.608	0.608	0.825	1.476	2.462	nan	1.682	0.578	0.903	3.188	4.034	1.160	1.233	0.700	0.553	1.346	1.581	0.557	0.733	2.211	0.831	0.205	0.587	0.086	0.333
3046	chr16	7882989	7900253	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	508870	NM_145893	54715	Hs.459842	NM_018723	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog 1	protein-coding	0.636	nan	0.647	0.069	0.225	0.111	0.052	0.107	0.094	0.498	0.360	0.170	0.242	0.006	0.099	0.584	0.480	0.050	0.054	0.133	0.127	nan	0.240	0.131	0.115	0.137	nan	0.153	0.378	0.572	0.207	0.160	0.245	0.332	0.099	0.390	1.030	2.632	1.041	0.016	0.145	0.028	0.344	0.052	0.170		0.041	0.069	0.172
6761	chr6	41278684	41290291	+	0	NA	Intergenic	MER31-int|LTR|ERV1	-19041	NM_004828	9436	Hs.194721	NM_004828	ENSG00000096264	NCR2	CD336|LY95|NK-p44|NKP44|dJ149M18.1	natural cytotoxicity triggering receptor 2	protein-coding	0.965	1.207	0.851	3.719	3.893	1.842	0.606	0.218	0.110	1.271	0.541	2.388	4.661	0.057	0.113	0.637	0.874	0.331	0.670	3.752	3.054	8.004	3.410	0.700	0.838	0.296	0.539	10.035	nan	0.577	0.595	0.396	0.584	1.349	1.819	0.224	0.363	2.098	1.468	4.416	1.877	0.157	0.047	0.606	2.388	0.417	2.644	0.289	0.096
575	chr1	155289731	155300833	+	0	NA	intron (NM_001105205, intron 4 of 8)	CpG	1096	NR_103478	23623	Hs.226499	NM_014328	ENSG00000160753	RUSC1	NESCA	RUN and SH3 domain containing 1	protein-coding	nan	nan	1.627	2.014	1.351	0.734	1.449	1.664	0.320	1.006	0.587	1.734	9.592	2.893	0.134	1.739	2.571	2.539	3.934	2.864	nan	2.570	1.089	0.908	0.971	1.870	2.775	2.956	4.292	1.239	1.101	1.871	3.564	1.114	0.986	1.381	2.653	1.222	0.590	1.949	4.634	0.376	0.821	1.449	1.734	0.281	3.421	1.406	0.984
8186	chr9	89949219	89955571	+	0	NA	Intergenic	Intergenic	-159748	NM_001288731	1612	Hs.380277	NM_004938	ENSG00000196730	DAPK1	DAPK	death associated protein kinase 1	protein-coding	0.795	0.690	0.699	0.032	0.377	0.101	0.061	0.585	0.153	0.150	0.224	0.244	0.458	0.051	0.120	0.186	0.141	11.303	8.679	0.280	0.378	0.164	0.027	1.133	1.161	0.118	0.097	0.165	0.215	0.950	1.244	0.236	0.269	0.073	0.079	0.118	0.137	1.050	0.713	0.018	0.055		0.112	0.061	0.244	0.106	0.015	0.094	0.039
1835	chr12	12096563	12110286	+	0	NA	Intergenic	Intergenic	-120454	NM_138723	79370	Hs.210343	NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding	1.034	0.943	1.580	2.231	0.531	0.176	0.128	0.049	0.059	0.782	0.268	0.244	1.608	0.024	0.117	1.502	2.182	0.421	0.593	nan	1.044	4.383	0.964	0.447	0.594	0.367	0.628	6.565	6.658	0.930	0.766	1.180	1.728	0.198	0.201	0.225	0.412	2.076	0.934	1.621	0.105	0.021	0.018	0.128	0.244	0.028	0.451	0.962	0.080
6549	chr5	170813524	170818744	+	0	NA	intron (NM_199185, intron 1 of 9)	intron (NM_199185, intron 1 of 9)	1426	NM_199185	4869	Hs.557550	NM_002520	ENSG00000181163	NPM1	B23|NPM	nucleophosmin	protein-coding	4.026	2.689	3.711	2.426	2.495	1.165	1.723	1.828	0.153	1.553	0.778	3.068	7.816	3.685	0.211	4.606	3.701	7.302	nan	6.260	6.389	5.141	3.229	6.002	6.459	3.702	nan	6.253	10.071	11.010	12.484	3.038	5.548	7.680	7.041	8.770	4.819	2.323	1.320	1.875	1.890	1.022	1.409	1.723	3.068	0.725	1.462	0.744	1.607
5523	chr3	127173570	127181907	+	0	NA	Intergenic	Intergenic	-68225	NR_110147	101927123	Hs.526761	NR_110147	ENSG00000244215	LINC02016	-	long intergenic non-protein coding RNA 2016	ncRNA	1.128	nan	0.873	1.073	0.598	0.387	0.585	0.157	0.078	0.735	0.283	0.690	2.934	0.092	0.047	0.432	0.392	0.115	0.122	1.976	1.879	1.347	0.315	0.165	0.151	0.384	nan	0.490	0.608	1.041	0.815	0.623	0.724	0.310	0.309	0.446	0.773	0.914	0.559	7.835	0.472	0.068	0.201	0.585	0.690	0.255	0.571	0.118	0.147
4886	chr20	21583255	21604345	+	0	NA	intron (NR_109880, intron 2 of 3)	L1ME3C|LINE|L1	43138	NR_109880	101929625	Hs.542413	NR_109880		LINC01727	-	long intergenic non-protein coding RNA 1727	ncRNA	0.825	1.102	nan	0.557	1.327	0.692	0.121	0.100	0.085	0.663	0.468	1.368	1.934	0.026	0.064	0.546	0.537	0.177	0.242	1.917	1.957	3.613	0.923	0.199	0.214	0.203	0.405	0.374	0.704	0.504	0.233	0.216	0.309	0.751	0.653	0.188	0.230	3.274	1.495	0.037	0.046	0.131	0.004	0.121	1.368	0.176	1.489	0.047	0.041
7126	chr7	1703524	1711285	+	0	NA	Intergenic	CpG	-41394	NM_001128636	392617	Hs.42896	NM_001128636	ENSG00000225968	ELFN1	PPP1R28	extracellular leucine rich repeat and fibronectin type III domain containing 1	protein-coding	1.277	0.555	2.096	0.351	0.436	0.129	1.056	0.134	0.062	0.081	0.109	1.778	nan	9.376	0.224	0.277	0.256	0.137	nan	4.178	3.230	nan	0.120	0.355	0.312	0.470	0.809	nan	3.609	0.896	0.920	0.123	0.087	0.097	0.169	0.551	1.757	0.171	0.171	0.553	0.134	0.012	0.082	1.056	1.778	0.352	0.273	0.039	0.126
6848	chr6	74224949	74234596	+	0	NA	5' UTR (NM_001402, exon 2 of 8)	5' UTR (NM_001402, exon 2 of 8)	983	NM_001402	1915	Hs.535192	NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding	nan	nan	4.082	5.032	4.590	2.876	4.007	3.264	0.468	1.979	0.986	5.341	6.833	9.235	0.349	5.319	5.537	5.633	9.018	6.802	5.712	8.426	4.443	11.262	10.865	2.380	3.023	5.252	6.391	6.662	7.521	2.429	5.556	6.130	6.238	6.506	4.647	1.650	0.941	4.144	3.282	1.155	1.936	4.007	5.341	1.156	1.752	1.569	1.686
7062	chr6	156277939	156284858	+	0	NA	Intergenic	Intergenic	13467	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA	nan	0.580	1.436	0.509	1.333	1.019	0.424	0.065	0.093	0.086	0.117	0.659	0.482	0.024	0.071	0.429	0.485	0.169	0.243	0.723	nan	10.563	5.271	0.196	0.261	0.090	0.171	0.421	0.697	0.418	0.272	0.376	0.472	1.189	1.764	0.234	nan	0.855	0.469	2.412	0.577	0.247	0.985	0.424	0.659	0.125		0.472	0.002
1038	chr10	14346514	14356707	+	0	NA	intron (NR_134578, intron 2 of 3)	intron (NR_134578, intron 2 of 3)	21273	NR_134578	55691	Hs.330463	NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding	nan	1.051	1.314	0.273	0.191	0.267	0.139	0.225	0.188	0.079	0.128	0.602	0.337		0.126	0.768	0.525	0.264	0.304	0.587	0.708	13.767	4.504	0.155	0.244	1.864	2.417	0.971	1.428	0.640	0.780	0.164	0.281	0.463	0.496	0.201	0.350	1.140	0.588		0.017	0.150	0.046	0.139	0.602	0.010	0.010	0.032	0.108
2363	chr13	86313964	86347935	+	0	NA	Intergenic	L4|LINE|RTE	42534	NM_032229	84189	Hs.525105	NM_032229	ENSG00000184564	SLITRK6	DFNMYP	SLIT and NTRK like family member 6	protein-coding	nan	nan	0.499	0.294	0.237	0.132	0.295	0.154	0.072	2.786	1.969	0.060	0.312	0.045	0.088	0.534	0.338	0.245	0.398	0.579	0.648	2.200	1.261	0.110	0.109	0.040	0.076	0.945	1.005	0.415	0.166	0.186	0.286	0.265	0.217	0.289	0.481	0.171	0.116	0.015	0.061	0.037	0.137	0.295	0.060	0.003	0.704	0.077	0.029
3088	chr16	21963155	21965958	+	0	NA	5' UTR (NM_003366, exon 1 of 14)	5' UTR (NM_003366, exon 1 of 14)	171	NM_003366	7385	Hs.528803	NM_003366	ENSG00000140740	UQCRC2	MC3DN5|QCR2|UQCR2	ubiquinol-cytochrome c reductase core protein II	protein-coding	5.163	3.236	3.891	6.922	6.475	2.757	3.954	1.820	0.171	2.225	0.993	4.634	17.635	3.373	0.079	8.678	9.107	6.509	8.571	8.143	8.301	13.188	8.616	22.341	25.549	4.762	5.652	11.581	18.460	13.696	13.441	10.619	14.675	9.790	10.456	10.090	8.461	4.861	2.621	3.136	4.703	1.460	2.094	3.954	4.634	1.723	1.846	3.917	2.803
5910	chr4	56260703	56265310	+	0	NA	intron (NM_018475, intron 1 of 5)	intron (NM_018475, intron 1 of 5)	926	NR_073070	55858	Hs.479766	NM_018475	ENSG00000134851	TMEM165	CDG2K|FT27|GDT1|TMPT27|TPARL	transmembrane protein 165	protein-coding	nan	2.671	2.064	4.825	3.401	1.883	2.465	4.318	0.408	2.382	1.098	3.011	6.628	2.244	0.132	4.890	4.800	4.350	7.109	4.747	4.010	6.820	2.285	7.954	8.276	6.087	7.570	7.701	10.905	4.214	4.709	2.294	6.620	3.218	3.208	2.867	4.478	8.282	4.376	3.603	4.641	0.743	2.237	2.465	3.011	0.656	5.019	1.435	0.808
1777	chr12	3830850	3836344	+	0	NA	intron (NM_032680, intron 2 of 10)	intron (NM_032680, intron 2 of 10)	28769	NM_001144958	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding	1.038	nan	nan	0.477	0.464	0.218	0.775	0.110	0.147	0.226	0.059	0.537	0.621		0.086	0.250	0.247	0.097	0.081	nan	0.722	0.528	0.269	0.259	0.391	1.099	1.440	0.339	0.417	0.192	0.147	0.303	0.170	0.304	0.375	0.388	nan	0.406	0.418	0.031	0.130	0.016	1.062	0.775	0.537	4.840		0.062	0.152
354	chr1	67231032	67246562	+	0	NA	intron (NM_152665, intron 3 of 4)	intron (NM_152665, intron 3 of 4)	20657	NM_152665	200132	Hs.479226	NM_152665	ENSG00000152760	TCTEX1D1	-	Tctex1 domain containing 1	protein-coding	1.072	0.983	nan	0.133	0.606	0.155	0.207	0.250	0.084	0.705	0.272	0.728	0.823	0.080	0.117	0.310	0.263	0.362	0.476	0.976	1.480	0.314	0.121	0.302	0.233	nan	nan	0.952	nan	0.402	0.201	0.347	0.496	2.184	2.335	0.324	0.466	1.154	0.864	1.076	4.747	0.665	0.112	0.207	0.728	0.119	0.146	0.255	0.080
3878	chr18	66462938	66512848	+	0	NA	intron (NM_024781, intron 1 of 7)	intron (NM_024781, intron 1 of 7)	22576	NM_024781	79839	Hs.280781	NM_024781	ENSG00000150636	CCDC102B	ACY1L|AN|C18orf14|HsT1731	coiled-coil domain containing 102B	protein-coding	0.757	0.872	0.770	0.283	0.364	0.215	0.643	1.015	0.120	0.126	0.129	0.435	0.285	0.020	0.077	0.449	0.296	3.176	4.657	0.496	0.633	1.181	0.456	0.509	nan	0.340	nan	1.101	0.984	0.410	0.169	0.136	0.228	0.196	0.285	0.340	0.702	1.173	1.069	0.144	0.105	0.036	0.051	0.643	0.435	0.018	0.089	0.071	0.196
1064	chr10	21447780	21465812	+	0	NA	intron (NM_001173484, intron 2 of 6)	intron (NM_001173484, intron 2 of 6)	-6123	NR_046283	100128511	Hs.635827	NR_046283	ENSG00000231920	NEBL-AS1	-	NEBL antisense RNA 1	ncRNA	0.952	3.488	0.599	4.070	1.246	0.704	0.249	0.175	0.153	0.849	0.300	1.492	1.889	1.877	0.115	0.530	0.485	1.435	2.485	1.613	1.224	6.351	3.036	0.303	0.250	0.178	0.192	2.602	4.062	0.316	0.189	1.145	2.048	2.095	2.571	0.120	0.180	1.099	0.697	0.022	0.966	0.412	1.595	0.249	1.492	0.092	0.805	0.940	0.013
7165	chr7	12634342	12649947	+	0	NA	intron (NM_033128, intron 1 of 13)	MER11A|LTR|ERVK	12996	NM_033128	85477	Hs.633359	NM_033128	ENSG00000006747	SCIN	-	scinderin	protein-coding	nan	1.296	nan	1.597	0.492	0.267	0.090	0.131	0.092	1.373	0.737	0.955	1.042	0.063	0.127	nan	0.372	0.184	0.220	1.166	1.371	2.279	1.062	0.315	0.369	0.380	0.549	6.460	6.185	0.242	0.145	0.168	0.200	0.346	0.577	0.244	0.475	2.793	1.359	0.021	0.376	0.051	0.061	0.090	0.955	0.031	0.871	0.025	0.123
7761	chr8	77751691	77758768	+	0	NA	intron (NM_024721, intron 6 of 10)	intron (NM_024721, intron 6 of 10)	123857	NR_130460	100422921		NR_130460	ENSG00000266712	MIR3149	-	microRNA 3149	ncRNA	1.331	0.736	1.003	0.172	0.520	0.296	0.218	0.403	0.045	0.378	0.388	0.084	0.244	0.185	0.058	1.871	1.339	10.494	4.010	0.551	0.680	1.144	0.317	16.994	17.418	0.832	1.050	0.421	0.530	0.494	0.243	1.114	2.476	3.839	3.767	0.289	0.645	1.265	0.901	0.072	0.189	1.145	0.067	0.218	0.084		0.850	0.611	0.122
4225	chr2	15682584	15706420	+	0	NA	intron (NM_015909, intron 3 of 51)	intron (NM_015909, intron 3 of 51)	6970	NR_052013	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	neuroblastoma amplified sequence	protein-coding	1.134	1.023	1.056	0.732	0.437	0.235	0.242	0.304	0.088	0.395	0.304	0.285	2.023	0.454	0.131	0.818	1.142	0.676	0.789	0.967	0.835	2.265	0.586	0.538	0.548	0.900	1.120	1.251	nan	1.096	0.947	28.065	35.452	0.249	0.206	1.158	nan	0.746	0.625	0.393	0.537	0.044	0.230	0.242	0.285	0.261	0.618	23.937	0.310
2734	chr14	91575353	91582221	+	0	NA	Intergenic	Intergenic	-1570	NM_024952	80017	Hs.309849	NM_024952	ENSG00000133943	C14orf159	-	chromosome 14 open reading frame 159	protein-coding	3.637	2.619	nan	3.010	2.175	1.312	3.587	2.563	0.493	0.114	0.119	1.490	2.416	2.051	0.113	1.694	2.802	3.818	5.615	2.606	2.802	5.793	1.423	2.131	2.285	3.437	4.018	3.196	4.335	3.753	5.306	1.830	2.268	6.573	7.571	1.371	1.974	nan	1.979	4.406	3.987	2.144	7.130	3.587	1.490	0.901	0.620	1.382	0.899
1217	chr10	115467914	115474374	+	0	NA	intron (NM_001267058, intron 1 of 5)	intron (NM_001267058, intron 1 of 5)	2040	NM_001267058	840	Hs.9216	NM_001227	ENSG00000165806	CASP7	CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3	caspase 7	protein-coding	0.619	nan	0.508	0.359	0.372	0.276	0.514	0.128	0.122	0.227	0.103	0.129	0.937	0.067	0.093	3.354	3.694	11.734	9.387	0.160	0.204	3.549	1.146	2.591	2.567	0.840	1.258	2.190	3.670	0.244	0.100	3.164	4.252	0.129	0.304	0.123	0.127	0.360	0.316	0.060	0.096	0.015	0.121	0.514	0.129	0.029	0.063	3.705	0.039
3240	chr17	2344772	2370040	+	0	NA	intron (NM_024086, intron 6 of 9)	L1MC4|LINE|L1	-38676	NR_028335	284009	Hs.632244	NM_001025459		LOC284009	-	uncharacterized LOC284009	ncRNA	1.339	0.844	0.910	0.175	0.343	0.262	0.209	0.200	0.115	0.087	0.128	0.275	0.768	0.086	0.099	0.390	0.418	0.227	0.373	0.577	0.790	0.511	0.265	0.377	0.378	0.743	1.110	0.769	0.880	1.972	1.500	0.174	0.193	0.242	0.423	1.021	4.044	0.635	0.355	0.501	1.033	0.079	0.400	0.209	0.275	0.407	0.064	0.051	1.313
2750	chr14	95973290	95992817	+	0	NA	Intergenic	CpG	16913	NR_003002	677768	Hs.448753	NR_003002	ENSG00000252481	SCARNA13	U93	small Cajal body-specific RNA 13	ncRNA	1.325	1.142	nan	2.743	1.952	1.135	1.265	1.574	0.096	0.237	0.205	2.724	5.900	0.229	0.093	1.657	2.159	0.249	0.307	2.617	2.857	1.360	0.383	0.814	0.710	0.355	0.890	1.589	1.562	0.705	0.453	2.684	3.312	0.364	0.436	0.284	0.515	nan	0.574	3.785	1.478	0.087	0.256	1.265	2.724	0.234	0.031	2.609	0.032
4165	chr2	673583	683777	+	0	NA	Intergenic	AluSz|SINE|Alu	-1241	NM_152834	129787	Hs.43899	NM_152834	ENSG00000151353	TMEM18	-	transmembrane protein 18	protein-coding	1.854	1.089	1.816	1.399	2.587	1.243	1.769	0.720	0.127	0.798	0.566	1.763	5.019	1.694	0.110	2.372	2.475	2.931	4.021	6.394	6.661	2.983	2.466	3.830	3.968	1.898	2.470	4.091	5.708	3.773	4.685	2.882	3.625	1.453	1.514	3.532	2.003	2.074	1.273	1.271	4.063	0.150	0.546	1.769	1.763	0.874	1.155	0.970	0.698
8218	chr9	98267017	98285474	+	0	NA	intron (NM_001083603, intron 1 of 23)	intron (NM_001083603, intron 1 of 23)	3002	NM_001083602	5727	Hs.494538	NM_000264	ENSG00000185920	PTCH1	BCNS|HPE7|NBCCS|PTC|PTC1|PTCH|PTCH11	patched 1	protein-coding	2.928	nan	3.634	3.310	2.264	1.235	4.159	0.511	0.096	1.459	0.916	3.133	5.458	3.170	0.083	1.918	2.569	3.360	nan	5.425	4.260	1.119	0.460	2.111	2.205	1.283	2.150	2.995	4.107	5.708	7.681	0.956	2.330	3.998	2.909	1.510	1.714	1.309	0.870	1.841	2.312	1.300	2.100	4.159	3.133	1.504	1.560	0.916	1.189
1850	chr12	14994013	15008468	+	0	NA	Intergenic	Intergenic	-4827	NM_021071	420	Hs.591158	NM_021071	ENSG00000111339	ART4	ARTC4|CD297|DO|DOK1	ADP-ribosyltransferase 4 (Dombrock blood group)	protein-coding	1.026	0.675	1.081	0.254	0.306	0.090	0.132	0.578	0.034	0.169	0.148	0.058	0.476	0.094	0.105	0.176	0.160	3.506	10.932	nan	0.605	0.295	0.149	0.289	0.309	0.909	1.229	0.476	0.416	0.500	0.247	0.204	0.325	0.070	0.043	0.463	1.842	0.406	0.437	0.100	0.099	0.006	0.184	0.132	0.058	0.034	0.047	0.062	0.317
1964	chr12	55384061	55418240	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-12579	NM_021191	58158	Hs.591024	NM_021191	ENSG00000123307	NEUROD4	ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4	neuronal differentiation 4	protein-coding	nan	0.826	0.973	0.062	0.551	0.277	0.605	0.085	0.062	0.067	0.105	0.175	0.452	0.044	0.075	nan	0.617	0.157	0.283	0.239	nan	0.213	0.105	0.135	0.133	4.099	nan	0.679	nan	3.708	3.008	0.114	0.179	3.572	4.381	0.868	2.545	0.744	0.687	0.002	0.180	1.517	0.882	0.605	0.175	0.923	0.048	0.035	0.634
3396	chr17	38458979	38508014	+	0	NA	intron (NM_001145301, intron 1 of 8)	intron (NM_001145301, intron 1 of 8)	9023	NM_001145301	5914	Hs.654583	NM_000964	ENSG00000131759	RARA	NR1B1|RAR	retinoic acid receptor alpha	protein-coding	nan	1.636	0.849	0.774	1.780	0.964	1.204	1.762	0.350	0.690	0.565	1.455	2.630	0.595	0.081	1.427	2.520	0.992	1.972	nan	2.226	1.102	0.463	1.832	1.921	1.293	1.803	2.722	3.261	nan	1.070	0.585	0.824	0.535	0.544	1.178	2.289	1.551	0.905	1.092	0.586	0.174	1.610	1.204	1.455	0.510	1.764	0.218	0.567
4768	chr2	236573722	236589483	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	167207	NR_131900	100506749	Hs.684184	NR_131900	ENSG00000235529	AGAP1-IT1	-	AGAP1 intronic transcript 1	ncRNA	1.673	nan	1.259	0.664	0.574	0.355	0.799	0.220	0.093	0.587	0.515	1.232	1.395	0.400	0.109	1.716	2.184	0.972	1.215	1.836	1.531	1.689	0.456	1.002	1.073	0.944	1.458	1.231	nan	4.278	4.716	0.567	1.393	1.290	1.251	1.269	1.175	0.885	0.638	0.492	0.883	0.457	0.968	0.799	1.232	0.294	0.381	0.260	0.362
1004	chr10	5074590	5088345	+	0	NA	Intergenic	HERVK13-int|LTR|ERVK	-9491	NM_001253908	8644	Hs.78183	NM_003739	ENSG00000196139	AKR1C3	DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS	aldo-keto reductase family 1 member C3	protein-coding	0.348	0.670	0.480	0.310	0.332	0.093	0.143	0.392	0.128	0.057	0.072	0.379	0.296	0.047	0.091	0.309	0.203	0.259	0.555	0.364	0.333	8.407	0.756	0.098	0.163	0.115	0.215	0.273	0.265	0.179	0.070	0.069	0.123	0.130	0.204	0.090	0.123	0.208	0.151	0.008	0.117	0.020	0.645	0.143	0.379	0.050	0.105	0.021	0.027
6574	chr5	180642782	180651790	+	0	NA	Intergenic	Intergenic	2347	NR_039781	100616342		NR_039781	ENSG00000264732	MIR4638	mir-4638	microRNA 4638	ncRNA	2.956	2.298	3.636	1.406	1.319	0.764	0.896	1.395	0.215	1.162	0.738	1.716	10.946	3.676	0.166	1.379	1.981	1.885	2.564	2.609	2.100	4.214	1.492	2.357	2.684	2.823	3.632	2.713	3.700	4.772	4.106	1.106	1.967	3.813	3.828	2.450	3.691	1.106	0.483	1.553	3.752	0.613	1.032	0.896	1.716	0.471	1.791	1.574	0.991
1013	chr10	10581641	10586391	+	0	NA	intron (NM_001326319, intron 1 of 16)	intron (NM_001326319, intron 1 of 16)	79538	NM_001326321	10659	Hs.309288	NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR	CUGBP, Elav-like family member 2	protein-coding	nan	0.597	0.457	0.110	0.126	0.102	0.217	0.079	0.101	0.102	0.069	0.041	0.273	0.046	0.144	2.920	3.053	10.443	6.722	0.201	0.304	0.463	0.304	0.642	0.638	0.563	0.978	0.108	0.146	0.183	0.062	0.416	0.755	0.027	0.045	0.232	0.336	0.077	0.140	0.011	0.074		0.051	0.217	0.041	0.041	0.043	0.229	0.051
5688	chr3	175984793	175996990	+	0	NA	Intergenic	Intergenic	-242000	NR_107017	102465858		NR_107017	ENSG00000283333	MIR7977	hsa-mir-7977	microRNA 7977	ncRNA	0.995	1.996	1.290	4.605	3.734	1.920	0.388	0.191	0.156	2.479	1.057	2.661	2.082	0.036	0.140	0.391	0.255	0.474	0.754	3.305	4.035	13.340	7.470	0.408	0.295	0.673	0.731	4.854	4.126	0.701	0.246	0.212	0.391	3.187	2.766	0.285	0.501	0.840	0.351	0.944	0.590	0.729	0.109	0.388	2.661	0.049	1.049	0.137	0.081
1693	chr11	119223028	119253237	+	0	NA	intron (NM_001243759, intron 1 of 11)	intron (NM_001243759, intron 1 of 11)	-3240	NM_171997	9099	Hs.524085	NM_004205	ENSG00000036672	USP2	UBP41|USP9	ubiquitin specific peptidase 2	protein-coding	1.379	1.359	1.350	0.484	0.627	0.341	0.723	0.175	0.079	0.488	0.351	0.621	1.536	0.361	0.090	0.832	nan	0.862	1.234	1.100	1.147	2.488	1.011	0.619	0.736	1.474	nan	2.114	2.725	2.180	1.982	1.824	2.458	1.273	1.094	1.774	4.212	1.546	0.971	1.378	0.639	0.139	0.245	0.723	0.621	0.341	0.396	1.171	1.102
316	chr1	55006953	55050163	+	0	NA	intron (NM_147161, intron 1 of 15)	SVA_F|Other|Other	14751	NM_147161	26027	Hs.745173	NM_015547	ENSG00000162390	ACOT11	BFIT|STARD14|THEA|THEM1	acyl-CoA thioesterase 11	protein-coding	1.975	1.545	2.304	0.815	0.394	0.186	0.465	0.196	0.123	0.312	0.188	0.328	0.723	0.457	0.128	0.604	1.055	0.315	0.529	1.001	1.012	1.677	0.501	0.640	0.613	1.062	1.435	1.232	1.849	0.734	0.623	0.431	0.568	0.732	0.798	1.297	nan	1.108	0.736	0.557	0.209	0.144	0.130	0.465	0.328	0.451	0.205	0.179	1.886
4549	chr2	152479413	152489832	+	0	NA	intron (NM_001164507, intron 68 of 181)	intron (NM_001164507, intron 68 of 181)	106379	NM_001164508	4703	Hs.588655	NM_004543	ENSG00000183091	NEB	NEB177D|NEM2	nebulin	protein-coding	nan	0.720	nan	0.109	0.207	0.138	0.086	0.139	0.077	0.075	0.136	0.137	0.297	0.037	0.090	0.344	0.222	0.188	0.284	0.189	0.226	0.197	0.134	0.255	0.256	0.439	0.712	0.224	0.252	0.629	0.386	2.811	8.131	0.028	0.048	0.472	0.775	0.355	0.334	0.032	0.112	0.009	0.023	0.086	0.137	0.010		5.633	0.190
1806	chr12	7124351	7127169	+	0	NA	promoter-TSS (NM_005768)	promoter-TSS (NM_005768)	82	NM_005768	10162	Hs.655248	NM_005768	ENSG00000111684	LPCAT3	C3F|LPCAT|LPLAT 5|LPSAT|MBOAT5|OACT5|nessy	lysophosphatidylcholine acyltransferase 3	protein-coding	3.838	nan	4.068	7.753	2.495	1.287	1.412	0.826	0.057	1.664	1.560	2.658	9.059	4.127	0.084	1.344	2.361	2.398	3.952	nan	6.409	7.516	3.050	10.347	10.592	2.926	3.437	3.273	6.630	3.923	4.061	1.940	3.736	3.011	1.643	3.864	5.571	1.335	0.673	2.979	2.281	0.943	3.358	1.412	2.658	9.218	1.511	1.736	1.614
4013	chr19	30210917	30216714	+	0	NA	Intergenic	Intergenic	-7119	NM_001256047	83636	Hs.529094	NM_031448	ENSG00000131943	C19orf12	MPAN|NBIA3|NBIA4|SPG43	chromosome 19 open reading frame 12	protein-coding	0.858	0.676	0.705	0.714	0.655	0.467	0.286	0.116	0.055		0.129	0.906	0.904	0.242	0.138	0.790	0.796	7.692	6.847	0.929	0.970	2.055	0.662	0.117	0.354	0.283	0.429	0.215	0.217	nan	0.850	1.283	1.490	0.449	0.349	0.394	0.599	0.649	0.542	0.038	0.108	0.050	0.136	0.286	0.906		0.052	0.428	0.064
7369	chr7	90580226	90603381	+	0	NA	intron (NM_001287137, intron 7 of 12)	AluSx|SINE|Alu	252673	NM_001287136	5218	Hs.258576	NM_012395	ENSG00000058091	CDK14	PFTAIRE1|PFTK1	cyclin dependent kinase 14	protein-coding	nan	0.779	nan	0.353	0.369	0.105	0.763	1.237	0.236	0.346	0.398	0.398	0.755	0.083	0.185	0.414	0.280	0.215	0.373	0.635	0.971	3.726	1.495	0.540	0.424	1.219	1.583	0.505	0.651	0.848	0.435	0.217	0.338	1.341	1.309	0.658	nan	1.441	0.747	0.274	0.172	0.254	0.319	0.763	0.398	0.093	0.777	0.103	0.183
6765	chr6	41680710	41704054	+	0	NA	intron (NM_001167827, intron 1 of 8)	intron (NM_001167827, intron 1 of 8)	9757	NM_001271945	7942	Hs.485360	NM_007162	ENSG00000112561	TFEB	ALPHATFEB|BHLHE35|TCFEB	transcription factor EB	protein-coding	1.660	2.115	1.147	3.334	0.845	0.412	0.592	1.076	0.132	2.478	1.201	1.747	2.130	0.888	0.104	0.750	1.692	0.480	0.884	1.305	1.575	5.971	2.434	0.639	0.646	0.965	1.428	4.231	nan	0.760	0.815	0.466	0.704	2.155	1.749	0.427	0.778	2.940	1.326	0.657	1.084	0.652	0.265	0.592	1.747	0.175	1.007	0.304	0.148
1370	chr11	32912034	32918281	+	0	NA	intron (NM_001076786, intron 1 of 12)	CpG	433	NM_001076786	79832	Hs.369368	NM_024774	ENSG00000060749	QSER1	-	glutamine and serine rich 1	protein-coding	5.207	5.939	nan	6.503	5.307	2.497	5.766	2.687	0.282	3.739	1.598	5.484	13.928	5.085	0.197	11.783	12.561	5.626	6.117	12.893	9.149	5.688	2.682	15.438	14.333	6.067	7.284	4.007	8.385	11.558	12.964	3.981	8.613	11.664	11.026	5.927	nan	3.650	1.713	4.415	4.437	3.408	2.707	5.766	5.484	3.294	1.593	3.789	2.263
4251	chr2	23713201	23736909	+	0	NA	intron (NM_052920, intron 2 of 13)	intron (NM_052920, intron 2 of 13)	116757	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding	1.923	0.825	1.211	0.267	0.414	0.317	0.282	0.240	0.075	0.320	0.212	0.586	1.979	0.119	0.090	0.899	1.601	0.913	1.597	0.558	0.602	0.648	0.279	0.909	0.880	0.641	1.069	0.747	nan	2.045	1.654	0.629	1.000	0.097	0.109	1.572	4.817	1.257	0.737	0.085	0.155	0.028	0.040	0.282	0.586	0.822	0.479	0.331	1.348
4809	chr20	2449220	2452379	+	0	NA	intron (NM_198216, intron 1 of 6)	intron (NM_198216, intron 1 of 6)	700	NM_003091	6628	Hs.83753	NM_003091	ENSG00000125835	SNRPB	CCMS|COD|SNRPB1|Sm-B/B'|SmB/B'|SmB/SmB'|snRNP-B	small nuclear ribonucleoprotein polypeptides B and B1	protein-coding	9.639	6.801	5.696	5.475	7.974	4.447	6.157	3.060	0.558	1.998	1.225	6.545	12.405	3.396	0.187	12.931	11.288	10.451	14.437	12.393	11.829	14.309	8.802	15.896	17.064	9.241	10.245	15.996	22.271	14.459	18.526	10.361	14.066	8.177	9.260	9.566	9.527	3.769	1.953	2.835	2.754	1.112	1.342	6.157	6.545	1.906	4.698	1.791	2.829
7256	chr7	36976869	37012142	+	0	NA	intron (NM_001206482, intron 16 of 21)	MER5A|DNA|hAT-Charlie	30212	NM_001039459	9844	Hs.434989	NM_014800	ENSG00000155849	ELMO1	CED-12|CED12|ELMO-1	engulfment and cell motility 1	protein-coding	1.640	0.986	2.159	0.534	0.529	0.306	0.269	0.109	0.096	0.696	0.418	1.986	0.863	0.068	0.141	1.136	1.438	0.285	0.305	1.243	nan	1.728	0.429	0.840	0.982	0.470	nan	nan	nan	1.028	0.840	0.586	0.754	2.468	4.446	0.376	nan	1.653	0.862	0.026	0.408	0.862	0.419	0.269	1.986	0.234	0.784	0.547	0.414
2649	chr14	64966451	64978157	+	0	NA	promoter-TSS (NM_001304507)	promoter-TSS (NM_001304507)	-373	NM_001304508	7597	Hs.654571	NM_006977	ENSG00000089775	ZBTB25	C14orf51|KUP|ZNF46	zinc finger and BTB domain containing 25	protein-coding	6.239	nan	4.848	4.729	4.646	2.310	3.970	4.154	0.518	1.846	0.995	4.211	7.317	3.950	0.169	3.144	3.831	4.991	7.416	8.134	7.004	3.912	1.724	nan	7.254	3.635	4.160	5.099	nan	5.404	7.042	1.754	4.002	6.240	6.341	3.112	3.504	3.536	1.885	6.863	5.927	1.704	3.602	3.970	4.211	0.956	2.148	1.531	1.917
3668	chr18	12644562	12659759	+	0	NA	intron (NM_001128626, intron 1 of 16)	intron (NM_001128626, intron 1 of 16)	4571	NM_001128627	56907	Hs.515283	NM_020148	ENSG00000134278	SPIRE1	Spir-1	spire type actin nucleation factor 1	protein-coding	2.206	2.147	1.295	1.424	0.994	0.518	0.580	1.496	0.243	0.708	0.406	1.506	5.173	0.922	0.165	1.338	1.310	1.153	2.303	2.265	1.827	3.405	1.772	2.872	2.990	1.425	1.711	1.952	2.918	1.290	1.474	0.611	1.132	0.640	0.735	2.015	2.066	2.332	1.410	1.447	0.343	0.082	0.153	0.580	1.506	0.307	0.514	0.227	0.913
3804	chr18	48083989	48118785	+	0	NA	intron (NM_001292039, intron 1 of 4)	MLT1A1|LTR|ERVL-MaLR	14903	NM_001292039	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK	mitogen-activated protein kinase 4	protein-coding	nan	1.203	1.358	0.452	0.643	0.250	1.645	0.048	0.046	0.245	0.110	0.745	1.651	0.069	0.072	1.218	1.126	0.645	0.853	1.516	1.423	7.985	2.283	0.322	0.308	0.166	0.270	0.779	0.975	0.762	0.639	0.514	0.681	2.491	1.795	0.404	nan	2.377	1.680	1.666	0.493	0.464	0.131	1.645	0.745	0.344	0.023	0.174	0.149
5483	chr3	115672821	115685603	+	0	NA	intron (NM_002338, intron 3 of 6)	MLT1B|LTR|ERVL-MaLR	337061	NM_001130064	2596	Hs.134974	NM_002045	ENSG00000172020	GAP43	B-50|PP46	growth associated protein 43	protein-coding	1.064	nan	0.642	0.144	0.409	0.175	0.139	0.175	0.112	0.136	0.181	0.084	0.248	0.061	0.100	0.392	0.273	0.337	0.329	0.270	nan	0.264	0.141	0.207	0.242	4.964	5.124	0.215	0.195	0.897	0.567	0.080	0.152	0.059	0.084	0.304	0.554	0.376	0.579	0.053	0.078		0.118	0.139	0.084	0.479	0.013	0.038	0.136
3259	chr17	7208890	7220154	+	0	NA	intron (NM_001970, intron 3 of 5)	intron (NM_001970, intron 3 of 5)	2828	NM_001143762	1984	Hs.534314	NM_001970	ENSG00000132507	EIF5A	EIF-5A|EIF5A1|eIF5AI	eukaryotic translation initiation factor 5A	protein-coding	4.192	1.968	2.677	1.927	3.288	1.891	3.137	1.233	0.132	0.987	0.477	2.889	4.791	9.806	0.483	3.972	4.119	3.501	5.254	4.556	4.265	5.233	2.210	4.552	4.345	2.054	3.208	4.532	5.809	2.636	3.583	1.512	2.594	2.707	2.780	4.565	5.639	1.498	0.774	2.250	2.028	0.551	1.410	3.137	2.889	1.157	3.038	0.932	2.493
3443	chr17	46984127	46987361	+	0	NA	promoter-TSS (NM_023079)	promoter-TSS (NM_023079)	13	NM_023079	65264	Hs.514297	NM_023079	ENSG00000159202	UBE2Z	HOYS7|USE1	ubiquitin conjugating enzyme E2 Z	protein-coding	5.547	3.072	nan	4.622	5.760	2.513	3.709	3.345	0.446	2.206	0.913	3.797	8.707	6.770	0.293	3.804	5.169	5.648	6.845	5.724	nan	5.764	3.896	15.560	15.748	2.952	3.442	12.384	nan	7.085	8.336	2.414	4.581	3.908	2.528	7.726	6.660	2.929	1.729	2.560	3.436	0.773	1.702	3.709	3.797	1.085	3.044	1.082	2.125
2437	chr13	109894420	109928396	+	0	NA	Intergenic	L1MEc|LINE|L1	-91757	NR_047700	100885782	Hs.655942	NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA	0.639	nan	0.682	0.124	0.239	0.113	0.217	0.188	0.099	0.042	0.084	0.137	0.343	5.779	0.176	0.675	0.476	1.082	3.374	0.295	0.389	0.165	0.091	0.129	0.166	0.057	0.101	0.265	0.264	0.655	0.490	0.227	0.295	0.085	0.108	0.428	0.692	0.217	0.196	0.044	0.115	0.014	0.095	0.217	0.137	0.020	0.123	0.052	0.149
3573	chr17	75537747	75578470	+	0	NA	non-coding (NR_040050, exon 2 of 2)	non-coding (NR_040050, exon 2 of 2)	15085	NR_040050	100507351	Hs.514518	NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA	1.281	1.089	0.887	0.089	0.603	0.339	1.436	0.148	0.136	0.194	0.136	0.999	1.118	0.067	0.106	1.408	1.855	0.280	0.510	0.899	0.859	0.455	0.177	0.615	0.609	nan	0.568	1.998	2.948	1.863	1.462	0.719	1.024	0.122	0.220	0.974	2.622	nan	0.426	4.282	2.266	0.030	0.123	1.436	0.999	0.149	0.140	0.611	0.566
3131	chr16	48641986	48646485	+	0	NA	promoter-TSS (NM_153029)	promoter-TSS (NM_153029)	-115	NM_153029	9683	Hs.511839	NM_153029	ENSG00000102921	N4BP1	-	NEDD4 binding protein 1	protein-coding	5.265	2.481	4.108	4.844	4.869	2.780	5.796	1.885	0.215	1.774	0.770	4.014	5.228	2.552	0.063	3.852	3.352	2.919	4.204	4.348	3.740	7.038	3.219	12.039	12.161	2.483	2.922	13.023	18.470	6.195	7.060	2.085	3.245	3.215	3.571	4.957	4.966	2.901	1.570	1.528	1.965	0.299	1.800	5.796	4.014	1.329	2.774	0.993	1.187
6899	chr6	109700780	109705851	+	0	NA	promoter-TSS (NM_001346500)	promoter-TSS (NM_001346500)	-373	NM_001346500	8763	Hs.520313	NM_006016	ENSG00000135535	CD164	DFNA66|MGC-24|MGC-24v|MUC-24|endolyn	CD164 molecule	protein-coding	6.867	nan	nan	7.912	6.006	2.847	6.021	4.320	0.241	1.335	0.541	6.301	11.463	5.808	0.188	7.537	9.293	7.827	11.738	10.897	nan	10.186	5.717	17.697	18.673	3.167	3.594	4.241	6.915	nan	8.861	6.127	9.905	5.819	6.637	8.001	8.353	3.041	1.597	5.017	5.158	1.200	2.579	6.021	6.301	1.683	3.521	2.125	2.485
6263	chr5	51783884	51809554	+	0	NA	Intergenic	Intergenic	-287055	NM_015946	53918	Hs.644352	NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota homolog (Drosophila)	protein-coding	nan	nan	0.870	0.096	2.951	1.456	1.675	0.059	0.113	0.297	0.346	0.380	0.625	0.034	0.139	0.128	0.071	0.441	0.247	2.622	3.516	nan	0.381	0.091	0.058	0.425	0.568	0.248	0.319	nan	0.402	0.074	0.078	1.998	1.757	0.907	2.758	0.409	0.297	6.954	3.230	0.559	0.077	1.675	0.380	0.030	0.035	0.011	0.801
4254	chr2	23885968	23893675	+	0	NA	intron (NM_052920, intron 5 of 13)	intron (NM_052920, intron 5 of 13)	260163	NR_125717	54454	Hs.467862	NM_017552	ENSG00000119778	ATAD2B	-	ATPase family, AAA domain containing 2B	protein-coding	1.023	0.448	1.065	0.058	0.273	0.143	0.334	0.172	0.085	0.164	0.151	0.316	0.869	0.098	0.052	1.559	2.466	5.592	3.291	0.363	0.534	0.643	0.213	1.983	2.233	1.133	1.637	1.355	nan	0.499	0.339	0.414	0.492	0.205	0.247	0.378	0.422	1.033	0.653	0.124	0.134	0.025	0.113	0.334	0.316	0.538	0.118	0.078	0.160
5437	chr3	98450559	98455304	+	0	NA	intron (NM_001323366, intron 1 of 11)	intron (NM_001323366, intron 1 of 11)	631	NM_001323366	10402	Hs.148716	NM_006100	ENSG00000064225	ST3GAL6	SIAT10|ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	1.202	2.281	1.665	0.242	0.785	0.407	1.172	0.763	0.170	0.274	0.136	0.253	1.411	0.320	0.079	0.294	0.554	2.334	3.324	0.925	0.716	0.469	0.157	0.956	1.180	0.202	0.272	1.792	2.105	10.885	19.120	1.433	3.027	0.054	0.085	0.569	0.485	0.268	0.374	0.024	2.862	0.060	0.218	1.172	0.253	0.103	3.151	1.192	0.755
7188	chr7	19134467	19157736	+	0	NA	Intergenic	CpG	11194	NM_000474	7291	Hs.66744	NM_000474	ENSG00000122691	TWIST1	ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38	twist family bHLH transcription factor 1	protein-coding	nan	0.862	nan	0.241	0.178	0.108	0.599	5.129	0.451	0.290	0.309	0.080	1.786	1.816	0.159	nan	0.202	3.627	3.923	0.941	0.957	1.145	0.330	2.205	2.308	0.963	1.412	0.370	0.395	1.000	0.897	0.076	0.102	3.056	2.264	0.144	0.372	0.738	0.666	0.019	0.181	0.688	0.030	0.599	0.080	0.048	0.381	0.017	0.079
2485	chr14	23387142	23389412	+	0	NA	promoter-TSS (NR_120599)	promoter-TSS (NR_120599)	119	NM_001308044	55147	Hs.4997	NM_018107	ENSG00000100461	RBM23	CAPERbeta|PP239|RNPC4	RNA binding motif protein 23	protein-coding	10.766	4.464	4.051	11.231	8.055	4.606	3.624	4.024	1.529	2.544	1.304	5.121	16.961	4.597	0.236	3.293	3.397	8.959	13.888	11.059	8.502	10.979	8.534	0.343	0.276	7.705	7.745	7.869	11.460	12.594	11.648	5.543	7.610	10.749	11.344	6.855	6.084	4.160	2.586	6.725	5.915	1.457	4.241	3.624	5.121	6.272	5.439	1.653	2.237
795	chr1	203517658	203529141	+	0	NA	Intergenic	Intergenic	60128	NM_014359	26254	Hs.632468	NM_014359	ENSG00000188770	OPTC	OPT	opticin	protein-coding	1.463	1.158	1.046	0.131	0.540	0.351	1.691	3.593	0.500	0.041	0.153	0.345	0.454	0.028	0.128	5.116	5.837	8.144	6.296	0.757	0.851	1.080	0.417	nan	nan	0.483	0.960	0.519	0.555	0.680	0.321	1.641	3.151	0.158	0.193	0.657	1.723	1.134	0.772	0.069	0.416	0.051	0.398	1.691	0.345	0.058	0.035	2.501	0.212
4853	chr20	11664837	11670578	+	0	NA	Intergenic	CpG	183656	NR_110635	728450	Hs.560990	NR_110635	ENSG00000228422	LINC00687	C20orf61|dJ1012F16.1	long intergenic non-protein coding RNA 687	ncRNA	0.809	nan	0.759	0.814	2.511	0.979	0.243	0.201	0.085	1.525	0.742	0.375	0.325	0.132	0.059	0.810	0.495	0.222	0.278	0.345	0.453	4.227	2.039	0.546	0.826	1.676	2.210	0.317	0.493	0.393	0.198	0.318	0.633	1.592	2.353	0.267	0.749	1.348	0.811	0.038	0.076	0.267	0.111	0.243	0.375	0.355	6.763	0.069	0.087
944	chr1	237478131	237488796	+	0	NA	intron (NM_001035, intron 2 of 104)	L1MEf|LINE|L1	-150956	NR_039626	100616141		NR_039626	ENSG00000266262	MIR4428	-	microRNA 4428	ncRNA	3.023	1.141	1.141	0.117	0.200	0.090	0.060	0.106	0.075	0.098	0.171	0.115	0.268	0.011	0.100	0.343	0.191	0.272	0.416	0.233	0.308	nan	0.064	0.290	0.191	0.296	0.359	nan	0.219	6.471	5.586	0.081	0.140	0.113	0.160	0.398	0.552	nan	0.311	0.036	0.042	0.036	0.008	0.060	0.115	1.380	0.104	0.038	0.139
7955	chr8	139818653	139835434	+	0	NA	intron (NM_152888, intron 7 of 64)	MLT1F2|LTR|ERVL-MaLR	99206	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding	nan	0.656	0.741	3.112	0.805	0.258	0.181	0.070	0.076	0.609	0.142	3.794	2.423	0.039	0.064	0.253	0.211	0.101	0.139	1.771	1.757	6.228	1.715	nan	0.131	0.106	0.221	3.597	2.913	0.385	0.271	0.179	0.227	1.673	2.300	0.172	0.247	1.227	0.800	0.026	0.164	0.261	0.270	0.181	3.794	0.133	5.575	0.035	0.032
5304	chr22	47157451	47172381	+	0	NA	intron (NR_104292, intron 2 of 13)	AluSx1|SINE|Alu	-4908	NM_001284305	25771	Hs.435044	NM_014346	ENSG00000054611	TBC1D22A	C22orf4|HSC79E021	TBC1 domain family member 22A	protein-coding	1.571	0.880	nan	0.805	1.441	0.601	1.176	0.581	0.110	0.759	0.438	1.088	2.733	0.853	0.124	2.801	2.692	1.649	2.655	1.875	1.776	2.394	0.734	3.007	3.126	1.134	1.650	3.363	3.654	2.413	3.046	1.403	1.916	1.216	1.372	1.044	1.252	1.614	0.921	1.561	0.978	0.293	0.576	1.176	1.088	0.583	2.161	0.791	0.389
1113	chr10	45864613	45873856	+	0	NA	promoter-TSS (NM_001320862)	promoter-TSS (NM_001320862)	-380	NM_001256154	240	Hs.89499	NM_000698	ENSG00000012779	ALOX5	5-LO|5-LOX|5LPG|LOG5	arachidonate 5-lipoxygenase	protein-coding	0.790	nan	1.255	0.151	0.217	0.087	0.097	0.079	0.017	0.120	0.108	1.036	2.266	0.070	0.088	5.646	2.824	8.573	4.257	0.195	0.161	0.527	0.160	0.989	0.927	0.183	0.390	1.163	1.499	0.910	1.035	2.223	2.493	0.096	0.116	0.408	0.949	1.356	0.557	0.415	0.472	0.010	0.156	0.097	1.036	0.053	0.340	1.308	0.119
3405	chr17	40111190	40126507	+	0	NA	promoter-TSS (NM_033133)	promoter-TSS (NM_033133)	89	NM_033133	1267	Hs.273621	NM_033133	ENSG00000173786	CNP	CNP1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	1.816	1.876	nan	1.228	1.977	0.879	0.919	0.889	0.177	1.061	0.585	1.269	2.355	0.623	0.116	3.453	4.913	2.224	3.065	2.424	nan	2.009	0.712	2.488	2.654	0.861	1.412	2.300	nan	1.907	1.459	1.398	1.922	1.344	1.375	1.306	2.168	1.523	0.745	0.992	1.032	0.332	0.716	0.919	1.269	0.368	0.760	0.524	0.533
4470	chr2	112193102	112231410	+	0	NA	intron (NR_024373, intron 1 of 1)	intron (NR_024373, intron 1 of 1)	40482	NR_136164	541471	Hs.560805	NR_015395	ENSG00000172965	MIR4435-2HG	AGD2|AK001796|LINC00978|MIR4435-1HG	MIR4435-2 host gene	ncRNA	1.172	nan	0.920	0.572	0.966	0.565	0.975	1.346	0.223	0.893	0.522	2.516	nan	0.657	0.120	1.636	1.881	2.656	4.416	1.321	nan	0.785	0.325	2.782	2.681	0.488	0.778	1.254	1.466	0.405	0.172	1.258	1.421	0.697	0.673	0.223	0.340	0.688	0.528	0.532	0.134	0.195	0.126	0.975	2.516	0.116	0.641	0.898	0.156
957	chr1	243651739	243666834	+	0	NA	intron (NM_006642, intron 17 of 17)	MIR|SINE|MIR	149808	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA	nan	1.083	nan	0.260	0.653	0.262	0.380	0.294	0.042	0.157	0.225	0.582	0.481	0.200	0.084	0.479	0.375	0.772	0.861	0.651	0.877	0.517	0.181	0.636	0.679	4.168	4.668	0.310	0.410	1.807	1.560	0.136	0.243	0.826	0.762	0.715	1.736	0.669	0.558	0.051	0.065	0.242	0.732	0.380	0.582	0.863	0.249	0.039	0.664
3996	chr19	18473137	18500139	+	0	NA	Intergenic	AluJr|SINE|Alu	-10132	NM_004864	9518	Hs.616962	NM_004864	ENSG00000130513	GDF15	GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB	growth differentiation factor 15	protein-coding	2.116	3.288	1.286	1.288	2.332	1.070	2.165	2.627	0.447	0.481	0.230	0.670	2.897	0.353	0.088	0.287	0.350	0.826	3.853	0.711	0.784	5.352	1.396	0.506	0.532	0.488	1.058	4.095	3.966	1.049	0.707	0.465	0.459	2.567	4.358	0.648	1.265	2.053	1.061	1.370	0.352	0.516	0.058	2.165	0.670	0.230	1.682	0.092	0.250
5185	chr22	19499771	19516079	+	0	NA	intron (NM_003504, intron 18 of 18)	intron (NM_003504, intron 18 of 18)	4935	NM_001130861	7122	Hs.505337	NM_003277	ENSG00000184113	CLDN5	AWAL|BEC1|CPETRL1|TMVCF	claudin 5	protein-coding	1.336	nan	2.889	1.352	0.323	0.215	0.305	0.073	0.063	0.924	0.336	0.250	0.957	0.053	0.043	0.387	0.508	0.222	0.329	1.718	1.637	2.817	0.569	0.332	0.362	0.609	0.857	0.735	1.200	1.177	1.141	0.146	0.210	2.382	2.499	0.701	1.043	3.851	1.896	0.284	0.683	0.631	0.111	0.305	0.250	0.579	1.636	0.024	0.249
4543	chr2	149921098	149960057	+	0	NA	intron (NM_001317004, intron 1 of 6)	AluSc8|SINE|Alu	6541	NM_001317004	130576	Hs.357567	NM_177964	ENSG00000150556	LYPD6B	CT116|LYPD7	LY6/PLAUR domain containing 6B	protein-coding	0.835	nan	3.128	0.159	0.296	0.181	0.427	0.249	0.112	0.078	0.136	0.252	0.496	0.042	0.087	0.383	0.308	1.172	3.875	0.343	0.357	0.297	0.104	0.280	0.257	0.268	0.440	0.463	0.417	0.377	0.231	0.131	0.252	0.239	0.334	0.185	0.245	0.498	0.415	0.037	0.023	0.064	0.173	0.427	0.252	0.108	0.034	0.112	0.060
5242	chr22	31736305	31744545	+	0	NA	exon (NM_032050, exon 1 of 4)	exon (NM_032050, exon 1 of 4)	1824	NM_032050	23598	Hs.731398	NM_014323	ENSG00000100105	PATZ1	MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23	POZ/BTB and AT hook containing zinc finger 1	protein-coding	nan	3.204	6.517	4.729	5.495	2.209	3.813	0.981	0.233	1.805	1.127	10.048	10.078	2.543	0.114	6.793	7.435	4.966	nan	9.220	7.931	3.544	1.290	5.944	5.632	2.958	nan	7.790	11.503	5.515	5.374	4.007	9.051	2.960	2.484	2.432	nan	1.966	0.874	3.687	2.099	0.875	4.793	3.813	10.048	1.237	2.152	3.371	1.181
502	chr1	146551495	146557344	+	0	NA	Intergenic	Intergenic	1884	NR_121645	101447996		NR_121645		RNVU1-8	RNU1-145|vU1.8	RNA, variant U1 small nuclear 8	snRNA	1.165	nan	1.364	2.708	1.114	0.643	1.063	0.755	0.187	2.064	0.915	2.082	5.320	1.282	0.177	3.823	5.225	0.307	0.327	2.720	2.596	3.146	2.435	4.964	5.533	0.789	1.459	3.388	4.626	1.819	2.189	6.889	7.746	0.058	0.066	3.212	1.993	0.312	0.354	0.579	3.457	0.048	0.170	1.063	2.082	0.183	2.175	1.770	0.585
314	chr1	54411644	54426545	+	0	NA	intron (NM_001256409, intron 3 of 8)	AluSc5|SINE|Alu	7095	NM_001256409	115353	Hs.40094	NM_052940	ENSG00000116212	LRRC42	dJ167A19.4	leucine rich repeat containing 42	protein-coding	1.776	1.390	2.108	1.090	1.077	0.681	0.513	0.766	0.206	0.857	0.458	0.480	2.565	0.910	0.137	0.523	0.757	1.172	1.771	3.252	3.568	2.861	0.909	2.004	2.031	1.759	2.447	2.698	5.055	1.345	0.981	0.577	0.817	0.963	1.111	1.200	nan	3.765	1.409	0.768	0.966	0.451	0.409	0.513	0.480	0.483	2.068	0.270	0.511
1796	chr12	6831849	6834685	+	0	NA	promoter-TSS (NM_001164093)	promoter-TSS (NM_001164093)	117	NM_016319	50813	Hs.530823	NM_016319	ENSG00000111652	COPS7A	CSN7|CSN7A|SGN7a	COP9 signalosome subunit 7A	protein-coding	4.208	nan	4.404	8.317	3.966	2.535	3.656	0.711	0.065	2.620	1.393	4.095	10.234	3.265	0.190	3.807	3.440	4.590	6.377	nan	7.595	17.656	6.656	9.110	8.930	7.698	8.564	6.588	7.759	6.498	6.507	3.463	4.000	5.309	5.126	7.230	10.470	3.072	1.614	2.649	2.862	0.376	2.233	3.656	4.095	8.260	1.994	1.769	3.165
3385	chr17	37006394	37011194	+	0	NA	TTS (NR_002576)	TTS (NR_002576)	454	NR_002576	619505	Hs.738742	NR_002576	ENSG00000199293	SNORA21	ACA21	small nucleolar RNA, H/ACA box 21	snoRNA	nan	2.797	2.573	2.033	5.399	2.471	2.413	1.788	0.334	2.213	0.749	3.293	5.674	2.668	0.186	4.232	3.959	5.777	8.545	nan	5.306	7.422	3.599	18.563	20.631	3.207	3.985	6.702	11.289	nan	8.827	2.429	4.013	6.393	7.343	6.178	6.682	3.862	1.834	1.671	1.419	0.413	1.438	2.413	3.293	1.133	1.462	1.081	1.736
6248	chr5	43552690	43560159	+	0	NA	intron (NM_183323, intron 1 of 10)	CpG	771	NM_182789	10605	Hs.482038	NM_006451	ENSG00000172239	PAIP1	-	poly(A) binding protein interacting protein 1	protein-coding	3.315	3.510	7.537	6.468	3.505	1.309	2.938	4.601	0.366	2.403	1.309	4.279	7.057	3.933	0.180	4.954	5.365	5.616	7.240	7.542	7.083	5.962	2.144	6.570	6.613	3.417	4.397	6.253	9.238	4.825	5.148	5.066	8.822	3.268	2.704	3.333	2.537	2.866	1.635	1.718	4.815	0.555	1.258	2.938	4.279	1.038	2.818	2.433	1.289
2998	chr15	93439407	93474393	+	0	NA	intron (NM_001042572, intron 2 of 12)	AluJr|SINE|Alu	9271	NR_036136	100422995		NR_036136	ENSG00000173575	MIR3175	mir-3175	microRNA 3175	ncRNA	nan	nan	nan	1.329	1.953	0.988	1.072	1.851	0.185	1.226	0.813	1.462	3.328	1.578	0.121	2.227	2.236	3.185	5.497	2.584	2.512	nan	2.525	7.903	8.013	2.568	3.073	3.184	4.621	nan	4.077	2.196	3.122	1.853	2.529	2.600	nan	1.361	0.821	0.856	1.786	0.248	1.466	1.072	1.462	0.269	0.705	1.920	0.633
5921	chr4	64481520	64494897	+	0	NA	Intergenic	Intergenic	786970	NM_001010874	253017	Hs.227752	NM_001010874	ENSG00000205678	TECRL	CPVT3|GPSN2L|SRD5A2L2|TERL	trans-2,3-enoyl-CoA reductase-like	protein-coding	nan	nan	0.723	0.295	0.645	0.335	0.239	0.094	0.048	0.177	0.112	0.404	0.694	0.032	0.124	0.806	1.529	0.169	0.312	0.125	0.205	8.478	3.442	0.201	0.145	3.877	3.926	2.126	2.543	2.524	2.065	0.089	0.164	1.143	1.620	0.312	0.355	0.174	0.094	0.013	0.073	0.172	0.173	0.239	0.404	0.239	0.088	0.030	0.148
2058	chr12	84976629	84984319	+	0	NA	Intergenic	Intergenic	326134	NM_018057	55117	Hs.44424	NM_018057	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	solute carrier family 6 member 15	protein-coding	0.798	0.803	0.580	0.104	0.286	0.146	0.084	0.292	0.166	0.123	0.135	0.016	0.344	0.042	0.135	0.301	0.214	0.227	0.166	0.401	0.488	0.171	0.049	0.280	0.332	5.855	6.675	0.380	0.312	0.434	0.171	0.152	0.201	0.159	0.103	0.611	1.474	0.575	0.526	0.007	0.065	0.025	0.040	0.084	0.016	0.025	0.053	0.052	0.179
5859	chr4	35462466	35472685	+	0	NA	Intergenic	L1MEc|LINE|L1	-778163	NR_122079	439933	Hs.591071	NR_122079	ENSG00000247193	LOC439933	-	uncharacterized LOC439933	ncRNA	0.459	0.512	0.457	0.103	0.154	0.094	0.076	0.059	0.063	0.078	0.114	0.083	0.161	0.003	0.061	0.436	0.161	5.708	7.388	0.203	0.268	0.254	0.094	0.196	0.166	0.349	0.543	0.235	0.228	0.463	0.164	0.124	0.168	0.090	0.104	0.115	0.224	0.322	0.480		0.087	0.009	0.062	0.076	0.083		0.030	0.020	0.122
5534	chr3	128392651	128401757	+	0	NA	Intergenic	Intergenic	-27485	NM_002950	6184	Hs.518244	NM_002950	ENSG00000163902	RPN1	OST1|RBPH1	ribophorin I	protein-coding	3.199	nan	1.817	1.696	2.794	1.729	1.566	1.038	0.618	1.698	1.107	2.144	2.012	1.319	0.112	3.000	3.001	1.357	0.712	3.662	3.467	7.460	3.755	5.124	5.661	1.911	nan	2.716	4.361	4.942	4.867	3.444	3.610	1.576	1.649	3.232	2.351	2.701	1.707	1.352	0.934	0.188	0.843	1.566	2.144	0.096	0.781	0.975	0.817
7372	chr7	91754346	91765040	+	0	NA	intron (NM_000786, intron 2 of 9)	intron (NM_000786, intron 2 of 9)	4147	NM_000786	1595	Hs.417077	NM_000786	ENSG00000001630	CYP51A1	CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1	cytochrome P450 family 51 subfamily A member 1	protein-coding	nan	1.472	nan	3.755	2.740	1.427	2.469	1.839	0.271	2.343	1.116	2.437	3.335	2.019	0.239	2.790	3.705	1.877	2.957	5.243	5.548	4.598	2.997	7.976	8.076	2.377	2.854	3.087	4.274	2.816	3.421	1.646	3.415	3.009	2.605	3.585	nan	4.272	1.977	2.065	3.126	0.756	1.524	2.469	2.437	0.713	1.030	1.063	1.115
5317	chr3	234930	259681	+	0	NA	intron (NR_045572, intron 1 of 2)	intron (NR_045572, intron 1 of 2)	7979	NR_045572	10752	Hs.148909	NM_006614	ENSG00000134121	CHL1	CALL|L1CAM2	cell adhesion molecule L1 like	protein-coding	0.479	1.216	0.643	0.289	0.565	0.231	0.207	0.070	0.065	0.139	0.119	0.193	6.653	0.048	0.077	0.191	0.161	0.341	0.506	0.596	0.609	1.607	0.486	0.274	0.283	0.101	0.120	0.254	0.346	0.512	0.324	0.200	0.342	0.159	0.163	0.124	0.203	0.639	0.530	0.358	0.824	0.082	0.208	0.207	0.193	0.012	0.029	0.092	0.072
6463	chr5	138277142	138328369	+	0	NA	intron (NM_001037633, intron 8 of 10)	intron (NM_001037633, intron 8 of 10)	91666	NM_001323989	1495	Hs.445981	NM_001903	ENSG00000044115	CTNNA1	CAP102|MDPT2	catenin alpha 1	protein-coding	1.303	1.468	nan	0.552	0.535	0.313	0.212	0.362	0.097	0.398	0.208	1.033	1.991	0.110	0.092	0.298	0.341	0.302	0.440	1.099	1.202	1.036	0.434	0.404	0.421	1.865	2.305	2.535	2.277	1.408	1.137	0.363	0.563	2.173	2.184	1.128	4.959	1.079	0.615	1.010	1.532	1.090	0.453	0.212	1.033	0.387	2.508	0.178	1.413
5878	chr4	41612223	41669184	+	0	NA	intron (NM_001330672, intron 13 of 31)	intron (NM_001330672, intron 13 of 31)	25784	NM_001330983	22998	Hs.335163	NM_014988	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding	0.761	nan	nan	0.285	0.358	0.163	0.077	0.545	0.133	0.163	0.155	0.145	0.333	0.023	0.099	1.890	2.078	3.069	4.387	0.221	0.260	0.135	0.089	0.504	0.494	0.591	0.918	0.410	0.531	0.489	0.308	0.568	0.904	0.051	0.061	0.387	0.781	1.653	0.979	0.037	0.214	0.013	0.102	0.077	0.145	0.033	0.048	0.344	0.242
3328	chr17	25619776	25623187	+	0	NA	promoter-TSS (NR_039748)	promoter-TSS (NR_039748)	375	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding	nan	nan	nan	3.917	10.695	5.219	3.806	4.596	0.504	1.757	0.794	5.166	16.462	6.751	0.346	8.851	9.863	11.840	14.594	9.654	6.828	13.314	5.357	16.295	16.887	4.042	4.772	7.815	11.456	8.406	9.809	6.447	9.493	7.247	7.950	6.967	8.614	3.820	1.642	4.374	6.685	1.426	4.559	3.806	5.166	1.560	3.403	3.959	4.331
2005	chr12	67428283	67443029	+	0	NA	Intergenic	Intergenic	54408	NR_120490	102724421	Hs.135774	NR_120490	ENSG00000257083	LOC102724421	-	uncharacterized LOC102724421	ncRNA	0.684	1.109	0.696	1.682	4.542	2.691	1.765	0.072	0.076	1.348	0.497	1.542	1.229	0.066	0.080	0.310	0.175	0.433	1.005	5.990	nan	6.256	2.341	0.243	0.332	0.778	1.112	0.889	0.883	0.370	0.187	0.177	0.219	1.346	1.875	0.249	0.388	2.168	1.462	0.340	0.186	0.180	0.059	1.765	1.542	0.053	0.222	0.034	0.084
7226	chr7	28366146	28371716	+	0	NA	intron (NM_182899, intron 1 of 9)	intron (NM_182899, intron 1 of 9)	29991	NM_182899	9586	Hs.437075	NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5	cAMP responsive element binding protein 5	protein-coding	1.637	1.890	1.205	1.243	9.814	5.049	0.207	0.824	0.260	3.071	0.632	5.539	1.628	0.058	0.090	0.556	0.347	0.193	nan	1.301	1.120	9.879	10.640	0.376	0.342	0.183	0.328	2.810	5.079	0.340	0.098	0.071	0.224	3.384	4.515	0.314	nan	3.471	1.987	0.020	0.129	0.822	0.389	0.207	5.539		1.034	0.018	0.244
2828	chr15	29326573	29340965	+	0	NA	intron (NM_005503, intron 2 of 13)	L1MEf|LINE|L1	119929	NM_001130414	321	Hs.618112	NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding	nan	0.496	nan	0.030	0.215	0.068	1.370	0.068	0.096	0.207	0.205	0.191	0.611	0.060	0.083	5.420	7.362	5.705	2.898	0.276	0.352	0.072	0.025	2.050	2.074	0.576	0.742	0.232	0.301	nan	0.471	3.630	5.657	0.131	0.180	0.493	0.837	0.639	0.572	0.031	0.062	0.020	0.121	1.370	0.191	0.153	0.099	5.241	0.199
831	chr1	207920583	207930397	+	0	NA	5' UTR (NM_172351, exon 1 of 13)	5' UTR (NM_172351, exon 1 of 13)	107	NM_172353	4179	Hs.510402	NM_002389	ENSG00000117335	CD46	AHUS2|MCP|MIC10|TLX|TRA2.10	CD46 molecule	protein-coding	2.315	3.299	2.602	2.391	3.389	1.653	1.365	1.979	0.247	1.977	1.361	3.190	4.580	1.327	0.184	10.010	10.170	10.085	9.307	4.049	4.220	6.184	2.147	27.225	28.918	1.869	2.350	3.613	6.299	2.743	2.975	3.690	5.209	1.930	1.691	2.533	4.034	2.011	0.967	1.466	0.733	0.397	0.822	1.365	3.190	0.387	1.520	3.359	1.462
5879	chr4	41744545	41802556	+	0	NA	Intergenic	Intergenic	-22563	NM_003924	8929	Hs.87202	NM_003924	ENSG00000109132	PHOX2B	NBLST2|NBPhox|PMX2B	paired like homeobox 2b	protein-coding	1.372	nan	nan	0.120	0.216	0.097	0.071	0.084	0.058	0.101	0.147	0.050	0.237	0.040	0.060	0.306	0.163	0.161	0.234	0.278	0.233	0.096	0.085	0.118	0.119	0.158	0.259	0.223	0.265	1.712	1.458	0.122	0.189	0.042	0.046	2.518	5.925	0.675	0.762	0.025	0.283	0.005	2.678	0.071	0.050	0.121	0.049	0.026	2.793
5013	chr20	55832492	55842587	+	0	NA	intron (NM_001719, intron 1 of 6)	intron (NM_001719, intron 1 of 6)	4168	NM_001719	655	Hs.473163	NM_001719	ENSG00000101144	BMP7	OP-1	bone morphogenetic protein 7	protein-coding	0.872	2.070	1.422	0.061	0.119	0.127	1.494	0.075	0.096	0.124	0.074	0.056	4.923	0.848	0.111	3.671	nan	0.695	1.111	0.169	0.257	0.369	0.083	0.167	0.188	0.095	0.219	0.097	0.141	0.343	0.172	3.617	8.763	1.707	1.648	0.256	0.383	0.226	0.283	3.418	1.063	0.311	3.522	1.494	0.056	0.145	0.030	3.242	0.037
5507	chr3	121901217	121909881	+	0	NA	intron (NM_001178065, intron 1 of 6)	L2c|LINE|L2	2368	NM_001178065	846	Hs.435615	NM_000388	ENSG00000036828	CASR	CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1	calcium sensing receptor	protein-coding	0.765	nan	0.570	0.302	0.189	0.184	0.118	0.127	0.093	0.261	0.203	0.304	4.615	0.025	0.045	0.360	0.223	0.152	0.309	0.403	0.505	0.178	0.138	0.286	0.291	0.142	nan	0.583	0.444	0.610	0.340	0.192	0.359	0.479	0.244	0.172	0.254	2.006	1.195	7.187	5.454	0.066	0.127	0.118	0.304		0.177	0.027	0.044
1960	chr12	54581406	54602568	+	0	NA	Intergenic	AluSg7|SINE|Alu	-9209	NR_045039	23583	Hs.632721	NM_014311	ENSG00000123415	SMUG1	FDG|HMUDG|UNG3	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein-coding	nan	0.794	0.923	0.266	0.428	0.249	0.290	0.206	0.115	0.185	0.182	0.232	1.309	0.277	0.083	nan	4.748	7.750	4.899	0.628	nan	0.981	0.361	6.410	6.816	0.804	nan	0.576	nan	0.720	0.403	1.771	2.666	0.501	0.530	0.555	1.570	0.757	0.542	0.145	0.531	0.140	0.056	0.290	0.232	0.238	0.193	1.276	0.345
8303	chr9	133402891	133427442	+	0	NA	Intergenic	Charlie15a|DNA|hAT-Charlie	39715	NR_027440	100272217	Hs.601255	NR_027440		LOC100272217	-	uncharacterized LOC100272217	ncRNA	nan	0.783	0.687	0.653	0.822	0.450	1.392	0.261	0.211	0.166	0.117	3.712	0.999	0.036	0.099	0.160	0.146	0.131	0.208	8.866	8.504	nan	0.172	0.134	0.143	1.027	1.043	1.903	2.783	1.851	1.859	0.193	0.173	0.314	0.406	0.333	0.688	0.770	0.634	3.772	2.342	0.090	0.042	1.392	3.712	0.165	0.132	0.020	0.150
5762	chr3	189051524	189080375	+	0	NA	Intergenic	L2a|LINE|L2	-107566	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA	1.250	1.418	0.750	0.207	3.393	1.706	0.309	0.512	0.146	0.277	0.191	0.570	0.724	0.026	0.081	0.307	0.232	0.316	0.681	0.430	0.520	5.662	2.354	0.333	0.292	0.442	0.747	0.588	0.778	0.793	0.387	0.096	0.181	0.738	0.599	0.291	0.635	1.077	0.656	0.071	0.092	0.142	0.148	0.309	0.570	0.040	0.035	0.010	0.068
4753	chr2	233350649	233358146	+	0	NA	Intergenic	Intergenic	-1828	NM_001290787	9427	Hs.26880	NM_004826	ENSG00000171551	ECEL1	DA5D|DINE|ECEX|XCE	endothelin converting enzyme like 1	protein-coding	1.265	nan	1.130	0.199	0.524	0.273	0.664	0.066	0.065	0.130	0.054	0.047	0.703	0.280	0.064	0.364	0.286	0.684	0.894	0.749	0.514	0.427	0.153	0.496	0.634	0.067	0.183	0.843	nan	0.339	0.257	0.212	0.194	0.165	0.181	0.866	2.510	0.232	0.279	0.496	0.036	0.013	0.021	0.664	0.047	0.089	6.033	0.027	0.428
1206	chr10	105551466	105597861	+	0	NA	intron (NM_014631, intron 1 of 13)	L2b|LINE|L2	40501	NM_014631	9644	Hs.678727	NM_014631	ENSG00000107957	SH3PXD2A	FISH|SH3MD1|TKS5	SH3 and PX domains 2A	protein-coding	nan	nan	1.082	0.506	0.511	0.230	0.133	0.105	0.090	0.260	0.120	0.303	0.322	0.061	0.068	2.141	2.291	4.140	3.689	0.488	0.538	1.531	0.559	0.916	0.943	0.394	nan	2.143	1.909	0.193	0.127	1.402	1.276	0.494	0.567	0.298	nan	0.714	0.484	0.021	0.113	0.138	0.194	0.133	0.303	0.189	0.676	0.568	0.096
1027	chr10	12795978	12811111	+	0	NA	intron (NM_020397, intron 4 of 9)	intron (NM_020397, intron 4 of 9)	-36192	NR_031752	100313841		NR_031752	ENSG00000221331	MIR548Q	-	microRNA 548q	ncRNA	nan	0.645	0.478	1.221	0.330	0.209	0.575	0.179	0.149	0.322	0.240	0.644	0.503	0.040	0.094	0.439	0.213	0.228	0.549	1.318	1.416	4.556	1.744	0.107	0.183	0.367	0.526	0.612	0.879	0.187	0.130	0.121	0.156	0.353	0.257	0.077	0.182	0.813	0.508	0.079	0.526	0.069	0.057	0.575	0.644	0.090	0.057	0.009	0.058
423	chr1	100300025	100325880	+	0	NA	Intergenic	Intergenic	-2688	NM_000642	178	Hs.904	NM_000028	ENSG00000162688	AGL	GDE	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	protein-coding	1.775	nan	nan	0.549	0.733	0.341	0.466	0.391	0.211	0.237	0.111	0.510	1.387	0.398	0.134	0.687	0.610	0.621	0.980	0.993	nan	1.610	0.580	1.096	1.117	1.052	1.540	nan	nan	1.258	1.098	0.435	0.746	0.532	0.406	4.308	nan	1.052	0.783	0.325	0.272	0.096	0.218	0.466	0.510	0.170	0.256	0.184	3.794
1953	chr12	53684354	53695063	+	0	NA	exon (NM_002624, exon 2 of 6)	exon (NM_002624, exon 2 of 6)	473	NM_002624	5204	Hs.655327	NM_002624	ENSG00000123349	PFDN5	MM-1|MM1|PFD5	prefoldin subunit 5	protein-coding	nan	1.769	1.164	2.656	1.703	1.150	1.264	0.613	0.119	2.239	1.204	2.963	4.154	1.331	0.122	nan	3.218	1.605	2.832	4.112	nan	4.910	1.501	2.370	2.857	1.630	nan	5.289	nan	1.758	1.402	1.387	1.913	1.512	1.782	1.725	2.152	4.466	2.405	1.733	2.867	0.259	0.443	1.264	2.963	0.498	1.409	0.424	0.404
2757	chr14	99732075	99741792	+	0	NA	intron (NM_138576, intron 1 of 3)	CpG	1117	NM_022898	64919	Hs.709690	NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha	B-cell CLL/lymphoma 11B	protein-coding	1.037	0.629	0.719	0.415	5.380	2.613	6.049	0.131	0.033	0.080	0.196	6.347	12.826	0.196	0.068	2.510	3.578	0.067	0.111	14.344	10.945	0.385	0.141	2.652	2.499	3.386	4.639	4.698	6.288	3.429	4.166	2.082	5.319	0.109	0.192	4.404	6.166	0.252	0.251	5.081	0.686	0.030	5.659	6.049	6.347	2.657	0.021	2.785	2.402
5983	chr4	105884113	105889239	+	0	NA	Intergenic	L1M2|LINE|L1	-180356	NM_017628	54790	Hs.367639	NM_017628	ENSG00000168769	TET2	KIAA1546|MDS	tet methylcytosine dioxygenase 2	protein-coding	0.472	nan	nan	0.415	0.570	0.104	0.249	0.044	0.031	0.122	0.027	0.489	3.935	0.064	0.075	0.407	0.305	9.275	nan	0.211	0.309	0.115	0.057	0.199	0.098	0.261	nan	1.153	1.252	0.272	0.099	0.061	0.260	0.370	0.297	0.208	nan	0.387	0.353	0.032	0.062	0.038	0.062	0.249	0.489	0.020		0.038	
4823	chr20	5587718	5594509	+	0	NA	intron (NM_019593, intron 1 of 19)	intron (NM_019593, intron 1 of 19)	559	NM_019593	56261	Hs.636359	NM_019593	ENSG00000125772	GPCPD1	EDI3|GDE5|GDPD6|PREI4	glycerophosphocholine phosphodiesterase 1	protein-coding	3.580	7.097	3.250	2.314	1.446	0.934	2.065	2.024	0.665	1.328	0.855	2.518	5.466	0.976	0.115	4.262	5.448	3.095	5.591	3.593	2.652	5.243	3.019	3.712	3.716	1.905	2.481	6.740	9.660	3.383	3.599	1.894	4.699	5.590	5.137	3.165	4.108	1.611	1.211	1.822	1.923	1.118	0.818	2.065	2.518	0.773	3.159	1.609	1.273
1222	chr10	119016692	119028975	+	0	NA	intron (NM_003054, intron 10 of 15)	intron (NM_003054, intron 10 of 15)	22249	NM_003054	6571	Hs.596992	NM_003054	ENSG00000165646	SLC18A2	SVAT|SVMT|VAT2|VMAT2	solute carrier family 18 member A2	protein-coding	0.599	nan	2.053	0.451	0.607	0.302	0.063	0.080	0.053	0.230	0.093	0.195	0.410	0.088	0.079	0.322	0.230	0.240	0.264	0.084	0.118	6.199	2.403	0.158	0.152	0.135	0.259	0.391	0.476	0.358	0.409	0.148	0.195	0.885	1.050	0.135	0.168	2.101	1.196	0.009	0.129	0.140	0.091	0.063	0.195	0.040	2.395	0.016	0.050
7011	chr6	141387116	141406212	+	0	NA	Intergenic	L1PA15-16|LINE|L1	391713	NR_039675	100616180		NR_039675	ENSG00000264390	MIR4465	-	microRNA 4465	ncRNA	nan	0.827	nan	0.512	0.607	0.176	0.285	0.146	0.093	0.073	0.107	0.311	0.308	0.054	0.096	0.414	0.292	0.327	0.341	0.441	0.462	4.857	2.149	0.232	0.278	0.333	0.467	0.386	0.382	0.768	0.480	0.105	0.146	0.376	0.316	0.225	0.254	0.400	0.336	0.073	0.065	0.079	0.088	0.285	0.311	0.081	0.080	0.026	0.038
422	chr1	100270234	100291492	+	0	NA	Intergenic	AluSc|SINE|Alu	-34777	NM_000642	178	Hs.904	NM_000028	ENSG00000162688	AGL	GDE	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	protein-coding	1.281	nan	nan	0.162	0.276	0.083	0.159	0.187	0.090	0.121	0.095	0.073	0.446	0.077	0.119	0.307	0.267	0.326	0.420	0.408	nan	0.310	0.164	0.492	0.517	0.441	0.756	nan	nan	0.574	0.425	0.164	0.278	0.106	0.120	1.211	nan	0.578	0.667	0.084	0.089	0.035	0.048	0.159	0.073	0.042	0.124	0.060	1.400
905	chr1	228643194	228654146	+	0	NA	Intergenic	Charlie2b|DNA|hAT-Charlie	-1105	NR_039812	100616308		NR_039812	ENSG00000266174	MIR4666A	MIR4666|hsa-mir-4666a	microRNA 4666a	ncRNA	1.570	nan	1.249	4.397	5.766	2.935	0.136	0.122	0.072	1.969	1.407	3.033	8.575	3.727	0.186	7.349	12.974	3.557	5.188	3.167	nan	6.781	1.928	7.583	7.638	1.795	2.375	2.445	3.048	3.985	5.779	0.535	1.347	4.379	3.336	5.993	7.050	1.975	1.214	3.197	1.721	0.490	0.621	0.136	3.033	1.272	1.364	0.396	1.153
3308	chr17	17578672	17606623	+	0	NA	intron (NM_030665, intron 1 of 5)	intron (NM_030665, intron 1 of 5)	7860	NM_030665	10743	Hs.655395	NM_030665	ENSG00000108557	RAI1	SMCR|SMS	retinoic acid induced 1	protein-coding	3.458	2.032	2.011	1.883	5.242	2.979	3.013	1.031	0.185	1.631	0.694	5.465	4.736	1.208	0.047	4.482	5.251	2.360	nan	5.059	4.823	3.971	1.492	2.189	2.220	1.890	2.642	5.937	8.127	nan	3.970	1.381	2.439	2.002	1.921	2.404	3.211	1.417	0.837	2.120	2.501	0.593	1.772	3.013	5.465	0.942	5.055	1.132	1.352
6400	chr5	108476156	108489059	+	0	NA	intron (NM_005246, intron 17 of 19)	intron (NM_005246, intron 17 of 19)	222300	NM_001308031	2241	Hs.107418	NM_005246	ENSG00000151422	FER	PPP1R74|TYK3|p94-Fer	FER tyrosine kinase	protein-coding	0.705	0.727	0.559	0.027	0.253	0.112	0.049	0.134	0.037	0.073	0.099		0.158	0.076	0.134	0.191	0.146	0.316	0.376	0.222	0.257	0.128	0.029	0.187	0.157	3.285	3.251	0.204	0.261	0.428	0.240	0.086	0.167	0.104	0.114	0.261	0.445	0.374	0.353	0.018	0.070	0.044	0.080	0.049		0.008	0.055	0.070	0.163
8049	chr9	12872387	12884098	+	0	NA	Intergenic	Intergenic	-63854	NR_125775	101929467	Hs.586443	NR_125775	ENSG00000235448	LURAP1L-AS1	-	LURAP1L antisense RNA 1	ncRNA	nan	nan	0.857	0.314	0.464	0.136	0.424	0.883	0.139	0.228	0.153	0.193	0.338	0.055	0.092	0.181	0.101	0.241	0.810	0.351	0.446	0.934	0.412	0.315	0.275	5.372	5.313	0.633	0.543	1.490	0.785	0.148	0.265	1.243	1.703	0.557	1.394	1.110	0.825	0.038	0.083	0.273	0.317	0.424	0.193	0.049	0.012	0.033	0.189
302	chr1	52340336	52346325	+	0	NA	intron (NM_001101662, intron 1 of 30)	intron (NM_001101662, intron 1 of 30)	382	NM_001242361	4898	Hs.584782	NM_002525	ENSG00000078618	NRDC	NRD1|hNRD1|hNRD2	nardilysin convertase	protein-coding	5.913	3.232	4.152	3.684	4.144	2.119	2.914	3.251	0.191	3.170	1.459	2.187	7.040	3.767	0.150	5.372	4.354	5.861	8.691	8.927	8.292	7.691	5.111	13.453	14.518	5.035	5.918	7.495	12.589	5.722	5.862	3.459	4.879	2.878	3.645	8.906	7.241	3.592	2.315	2.690	2.199	0.334	1.733	2.914	2.187	1.447	1.914	1.292	1.922
1451	chr11	62491334	62500482	+	0	NA	promoter-TSS (NM_001318814)	promoter-TSS (NM_001318814)	-44	NM_001318816	283237	Hs.31704	NM_173810	ENSG00000162222	TTC9C	-	tetratricopeptide repeat domain 9C	protein-coding	nan	2.861	2.344	5.096	4.970	2.276	3.224	1.615	0.370	2.046	1.328	4.777	8.823	4.518	0.228	6.881	7.157	5.178	7.390	9.964	9.413	5.571	3.183	8.464	8.555	3.983	5.387	5.587	8.556	5.994	5.129	5.116	9.798	4.536	5.501	3.775	4.640	2.906	1.116	4.151	6.027	1.612	2.948	3.224	4.777	0.946	1.919	3.311	1.551
6732	chr6	34991702	35027624	+	0	NA	intron (NM_015245, intron 11 of 23)	intron (NM_015245, intron 11 of 23)	99524	NM_001261818	6954	Hs.435371	NM_018679	ENSG00000124678	TCP11	D6S230E|FPPR	t-complex 11	protein-coding	nan	1.886	nan	1.133	0.399	0.156	0.837	1.016	0.138	0.481	0.231	0.459	2.927	0.088	0.119	0.791	1.177	1.442	nan	nan	0.977	0.793	0.314	0.546	0.665	0.744	1.197	2.103	2.657	3.410	3.695	0.263	0.376	3.109	3.550	1.791	3.497	2.323	1.337	0.647	0.951	1.054	0.446	0.837	0.459	0.554	0.079	0.061	1.654
2452	chr13	112126218	112138563	+	0	NA	Intergenic	Intergenic	-115966	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA	0.759	nan	1.090	2.603	1.783	0.719	0.807	0.043	0.013	1.321	0.355	2.640	1.474	0.044	0.050	0.444	0.300	0.164	0.290	3.961	4.054	11.733	7.426	0.083	0.072	0.032	0.087	3.304	3.771	0.242	0.178	0.604	0.827	4.796	3.420	0.080	0.174	1.442	0.901	0.576	0.649	0.926	0.161	0.807	2.640	0.016	3.684	0.476	0.079
5400	chr3	73159525	73161117	+	0	NA	Intergenic	U2|snRNA|snRNA	49511	NM_018029	55096	Hs.658858	NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus-like nucleoprotein 2	protein-coding	4.985	5.753	4.152	10.276	8.297	5.572	5.855	3.850		3.925	1.987	6.368	8.665	5.100	0.343	10.830	9.198	7.427	nan	8.419	8.342	4.899	8.390	9.810	10.507	1.894	2.620	4.363	4.990	8.848	7.289	9.267	8.532	5.930	7.073	9.323	nan	8.729	7.625	6.842	11.167	2.043	1.470	5.855	6.368	6.535	3.067	3.159	4.653
3152	chr16	61951077	61977988	+	0	NA	intron (NM_001796, intron 2 of 11)	intron (NM_001796, intron 2 of 11)	106207	NM_001796	1006	Hs.368322	NM_001796	ENSG00000150394	CDH8	Nbla04261	cadherin 8	protein-coding	nan	nan	0.540	0.098	2.109	1.047	0.713	0.091	0.072	0.265	0.262	2.053	0.178	0.020	0.067	0.516	0.532	0.443	0.382	0.146	0.179	1.139	0.368	1.764	1.927	0.493	nan	0.530	0.623	0.361	0.157	0.343	0.502	0.428	0.578	0.211	0.374	0.744	0.591	0.229	0.063	0.075	0.059	0.713	2.053	0.137	0.630	0.185	0.072
6000	chr4	117100219	117124847	+	0	NA	Intergenic	Intergenic	-108348	NR_031737	100302290		NR_031737	ENSG00000270394	MIR1973	hsa-mir-1973|mir-1973	microRNA 1973	ncRNA	0.575	0.791	0.618	0.221	0.157	0.085	0.099	0.046	0.104	0.064	0.100	0.116	0.223	0.026	0.101	0.228	0.159	0.150	0.198	0.119	0.189	0.194	0.089	0.128	0.133	7.036	8.245	0.307	0.386	0.358	0.167	0.106	0.171	0.115	0.092	0.517	1.285	0.418	0.321	0.009	0.022	0.016	0.068	0.099	0.116		0.087	0.020	0.380
3366	chr17	32924996	32949416	+	0	NA	intron (NM_001304438, intron 1 of 8)	L2c|LINE|L2	29438	NM_001304438	124842	Hs.310482	NM_207313	ENSG00000181291	TMEM132E	DFNB99	transmembrane protein 132E	protein-coding	nan	0.672	0.658	0.022	1.238	0.526	1.784	0.079	0.067	0.080	0.065	0.467	2.908	0.062	0.097	1.033	1.959	0.096	0.177	nan	1.722	0.134	0.081	0.133	0.172	0.152	0.291	0.129	0.161	nan	1.730	0.388	0.570	2.204	2.284	1.297	4.319	0.732	0.669	1.423	0.493	0.770	0.046	1.784	0.467	1.044	0.034	0.315	0.740
7908	chr8	124545388	124554777	+	0	NA	intron (NM_001242463, intron 1 of 6)	intron (NM_001242463, intron 1 of 6)	3411	NM_058229	114907	Hs.403933	NM_058229	ENSG00000156804	FBXO32	Fbx32|MAFbx	F-box protein 32	protein-coding	nan	nan	nan	7.929	1.551	0.821	1.290	0.855	0.155	0.813	0.235	1.836	nan	0.174	0.060	1.580	2.942	0.843	1.688	6.443	4.890	12.731	7.410	nan	nan	0.266	0.442	4.180	7.181	0.781	0.650	1.669	2.579	2.536	3.293	0.658	1.100	2.901	1.610	1.150	6.515	0.465	3.973	1.290	1.836	0.181	0.666	2.402	0.212
7418	chr7	104640128	104683275	+	0	NA	intron (NM_182931, intron 1 of 26)	intron (NM_182931, intron 1 of 26)	7064	NM_018682	55904	Hs.592262	NM_018682	ENSG00000005483	KMT2E	HDCMC04P|MLL5|NKp44L	lysine methyltransferase 2E	protein-coding	nan	1.461	2.000	1.506	2.201	1.182	1.383	1.854	0.314	1.640	0.914	1.808	3.302	2.257	0.213	2.790	2.808	2.666	3.964	3.430	3.159	2.694	1.646	3.934	3.962	2.694	2.957	1.906	2.889	5.090	3.873	2.634	3.939	2.991	3.860	3.979	nan	1.843	1.021	1.703	1.961	0.816	1.330	1.383	1.808	0.593	0.712	1.482	1.446
1468	chr11	65181864	65213141	+	0	NA	non-coding (NR_131012, exon 1 of 1)	non-coding (NR_131012, exon 1 of 1)	7233	NR_028272	283131	Hs.523789	NR_002802	ENSG00000245532	NEAT1	LINC00084|NCRNA00084|TncRNA|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	nan	4.330	3.262	4.048	4.237	2.426	1.535	2.498	0.232	1.702	0.728	2.836	5.438	4.519	0.174	5.158	6.922	2.265	4.693	3.066	3.027	3.542	1.951	7.911	8.318	2.631	3.322	6.826	9.758	2.812	2.258	4.363	7.989	4.857	6.280	1.440	2.064	2.090	1.127	3.041	5.245	1.071	0.697	1.535	2.836	1.018	1.957	2.472	0.565
3184	chr16	77534233	77551373	+	0	NA	Intergenic	MamRep38|DNA|hAT	-73792	NM_199355	170692	Hs.188746	NM_139054	ENSG00000140873	ADAMTS18	ADAMTS21|KNO2|MMCAT	ADAM metallopeptidase with thrombospondin type 1 motif 18	protein-coding	0.672	0.675	nan	0.238	0.415	0.188	0.296	0.087	0.113	0.101	0.116	0.253	0.236	0.019	0.083	2.118	2.047	5.888	4.105	0.278	0.438	0.203	0.065	0.412	0.442	0.088	0.169	0.293	0.331	0.419	0.198	4.106	5.430	0.053	0.052	0.221	0.640	0.557	0.561	0.278	0.094		0.033	0.296	0.253	0.011	0.018	4.024	0.137
1726	chr11	127314353	127333415	+	0	NA	Intergenic	Intergenic	182919	NR_120580	101929497	Hs.737442	NR_120580	ENSG00000273409	LOC101929497	-	uncharacterized LOC101929497	ncRNA	0.531	0.705	1.023	0.281	3.309	1.683	0.500	0.020	0.033	0.230	0.250	0.960	1.021	0.045	0.118	0.571	0.658	0.194	0.244	0.988	1.085	4.819	1.364	0.168	0.164	1.062	1.540	1.414	1.557	0.420	0.249	0.442	0.537	2.338	1.812	0.175	nan	1.444	0.849	0.079	0.168	0.737	0.282	0.500	0.960	0.059	0.027	0.104	0.129
7061	chr6	155765163	155773381	+	0	NA	intron (NM_015718, intron 4 of 13)	MIR3|SINE|MIR	7765	NM_015718	50508	Hs.247776	NM_015718	ENSG00000074771	NOX3	GP91-3|MOX-2	NADPH oxidase 3	protein-coding	nan	0.962	0.668	0.266	0.525	0.379	3.532	0.163	0.119	0.223	0.320	0.393	1.070	0.044	0.126	0.537	0.498	0.689	3.618	0.965	nan	9.505	3.873	0.288	0.385	1.159	1.305	0.284	0.410	0.482	0.170	1.142	1.022	0.885	0.636	0.224	nan	2.006	0.880	0.900	0.195	0.128	0.377	3.532	0.393	0.521	0.025	0.228	0.031
1494	chr11	69450948	69461054	+	0	NA	5' UTR (NM_053056, exon 1 of 5)	5' UTR (NM_053056, exon 1 of 5)	128	NM_053056	595	Hs.523852	NM_053056	ENSG00000110092	CCND1	BCL1|D11S287E|PRAD1|U21B31	cyclin D1	protein-coding	nan	0.913	2.206	0.381	0.436	0.237	0.302	0.109	0.080	0.170	0.145	0.343	1.616	5.738	0.176	3.558	4.048	1.083	1.862	0.883	0.830	0.748	0.356	13.473	13.127	0.284	0.577	0.430	0.619	6.135	8.934	2.356	3.202	1.538	0.983	0.121	0.145	0.376	0.365	0.259	0.088	0.357	0.058	0.302	0.343	0.625	2.125	0.830	0.048
7008	chr6	139610427	139618482	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1246	NM_153235	167838	Hs.535820	NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding	1.787	1.617	0.912	0.148	0.654	0.215	2.017	1.233	0.059	0.663	0.339	0.200	0.879	0.150	0.123	1.607	1.073	6.055	1.516	0.510	0.481	nan	3.502	0.216	0.349	1.000	1.364	0.849	0.797	0.716	0.318	0.368	0.250	4.412	4.388	0.167	nan	0.737	0.479	0.058	0.079	0.638	0.196	2.017	0.200	0.155	0.138	0.061	0.031
6132	chr5	1495806	1525982	+	0	NA	promoter-TSS (NR_106723)	promoter-TSS (NR_106723)	77	NR_106723	102466103		NR_106723	ENSG00000273742	MIR6075	hsa-mir-6075	microRNA 6075	ncRNA	0.950	1.421	3.759	0.623	1.138	0.638	0.957	0.482	0.128	0.505	0.365	6.274	1.349	0.388	0.101	0.589	0.774	0.569	nan	2.929	2.476	1.084	0.345	0.413	0.411	1.154	2.013	nan	3.205	nan	1.935	0.387	0.710	0.364	0.374	0.459	0.839	1.301	nan	0.616	1.671	0.139	0.115	0.957	6.274	0.337	0.594	0.076	0.324
1906	chr12	31876209	31928611	+	0	NA	Intergenic	LTR8|LTR|ERV1	-20302	NM_001278412	196394	Hs.585084	NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding	1.514	nan	1.513	2.254	1.063	0.586	1.716	0.234	0.086	0.407	0.319	0.989	1.694	0.374	0.117	0.797	0.695	0.588	1.623	1.409	1.100	2.322	0.613	2.758	2.896	0.605	0.928	0.854	1.079	0.610	0.393	0.585	0.669	5.555	12.229	0.465	0.943	1.127	0.754	0.321	0.623	0.874	1.212	1.716	0.989	0.250	1.641	0.390	0.169
8042	chr9	10163607	10174813	+	0	NA	intron (NM_002839, intron 3 of 45)	AluY|SINE|Alu	369818	NR_135135	105375972	Hs.738242	NR_135135	ENSG00000230920	LOC105375972	-	uncharacterized LOC105375972	ncRNA	nan	nan	0.735	1.079	1.225	0.714	0.342	0.097	0.072	1.123	0.772	1.267	0.493	0.029	0.072	0.203	0.148	0.221	0.324	0.496	0.604	7.788	4.302	0.097	0.124	1.406	1.544	0.785	1.002	0.434	0.272	0.163	0.201	3.146	2.433	0.476	1.054	2.951	1.426	0.020	0.064	0.383	0.070	0.342	1.267	0.026	0.753	0.038	0.045
3235	chr17	1453091	1479998	+	0	NA	promoter-TSS (NM_006224)	promoter-TSS (NM_006224)	-434	NM_006224	5306	Hs.429819	NM_006224	ENSG00000174238	PITPNA	HEL-S-36|PI-TPalpha|PITPN|VIB1A	phosphatidylinositol transfer protein alpha	protein-coding	1.437	0.771	1.587	0.371	0.592	0.297	0.709	0.225	0.136	0.099	0.103	0.448	0.694	0.324	0.081	1.645	1.903	0.732	1.065	1.392	1.304	1.706	0.522	0.915	0.862	0.391	0.857	1.041	1.339	0.618	0.439	0.524	0.687	0.313	0.360	1.831	4.872	0.743	0.500	0.095	0.254	0.081	0.109	0.709	0.448	0.340	1.099	0.107	1.077
5430	chr3	89571999	89585772	+	0	NA	Intergenic	Intergenic	422211	NM_182644	2042	Hs.123642	NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding	nan	0.638	0.542	0.020	0.146	0.024	0.056	0.039	0.047	0.045	0.089	0.061	0.169	0.040	0.077	0.199	0.171	10.470	6.754	0.188	0.274	0.258	0.123	0.120	0.160	0.356	0.432	0.117	0.132	0.318	0.128	0.086	0.067	0.043	0.053	0.185	0.480	0.400	0.425	0.016	0.006	0.021	0.017	0.056	0.061	0.036	0.066	0.014	0.036
5052	chr20	62669769	62689153	+	0	NA	3' UTR (NM_018419, exon 2 of 2)	3' UTR (NM_018419, exon 2 of 2)	1518	NM_018419	54345	Hs.8619	NM_018419	ENSG00000203883	SOX18	HLTRS|HLTS	SRY-box 18	protein-coding	1.621	1.644	3.473	0.289	0.769	0.267	0.219	0.151	0.108	0.238	0.193	0.838	0.942	0.798	0.096	0.962	nan	0.572	0.764	1.102	1.084	1.373	0.417	0.953	1.158	2.740	3.944	0.506	0.589	0.632	0.418	0.677	0.629	0.341	0.302	0.252	0.382	0.715	0.574	0.796	0.238	0.054	0.098	0.219	0.838	0.801	1.282	0.101	0.039
4435	chr2	95957257	95977369	+	0	NA	intron (NM_013434, intron 1 of 8)	MIRb|SINE|MIR	4241	NM_013434	30818	Hs.437376	NM_013434	ENSG00000115041	KCNIP3	CSEN|DREAM|KCHIP3	potassium voltage-gated channel interacting protein 3	protein-coding	1.382	2.286	4.871	0.831	0.701	0.294	1.952	0.064	0.040	0.735	0.477	1.378	6.563	0.032	0.057	1.454	2.696	0.421	0.554	2.152	1.950	2.253	0.588	1.489	1.446	0.290	0.461	0.510	0.663	0.754	0.891	1.043	1.240	0.893	0.677	0.606	0.948	0.928	0.547	5.545	1.598	0.309	0.071	1.952	1.378	1.516	0.602	0.799	0.234
2327	chr13	67618006	67646715	+	0	NA	intron (NM_001318372, intron 2 of 4)	intron (NM_001318372, intron 2 of 4)	67342	NR_046637	100874087	Hs.606903	NR_046637	ENSG00000233840	PCDH9-AS4	-	PCDH9 antisense RNA 4	ncRNA	nan	1.234	nan	0.094	0.147	0.095	0.906	0.091	0.042	0.110	0.119	0.117	0.292	0.036	0.083	0.466	0.343	0.121	0.155	0.358	0.470	0.390	0.223	0.117	0.147	0.444	0.579	0.273	0.276	0.640	0.337	0.135	0.246	3.281	3.667	0.643	1.461	0.142	0.141	0.017	0.062	1.000	0.207	0.906	0.117	0.122	0.025	0.052	0.292
6384	chr5	96812181	96822102	+	0	NA	Intergenic	Intergenic	-23259	NR_105028	102546227	Hs.582516	NR_105028	ENSG00000250331	LINC01340	-	long intergenic non-protein coding RNA 1340	ncRNA	nan	1.093	0.999	0.071	0.102	0.113	0.583	0.081	0.065	0.016	0.067	0.024	0.202	0.054	0.150	0.222	0.206	0.291	0.303	0.119	0.180	0.107	0.036	0.141	0.136	0.205	0.303	0.194	0.185	0.428	0.258	0.104	0.094	8.387	10.532	0.224	nan	0.208	0.196	0.039	0.089	2.513	0.094	0.583	0.024		0.041	0.010	0.062
3179	chr16	75271297	75302661	+	0	NA	intron (NM_001170720, intron 1 of 7)	intron (NM_001170720, intron 1 of 7)	-1453	NM_014567	9564	Hs.479747	NM_014567	ENSG00000050820	BCAR1	CAS|CAS1|CASS1|CRKAS|P130Cas	BCAR1, Cas family scaffolding protein	protein-coding	1.958	1.137	nan	0.820	0.909	0.327	1.550	1.624	0.256	0.350	0.162	1.211	2.048	0.529	0.068	1.479	2.301	0.959	1.657	1.616	1.528	1.040	0.441	2.008	1.941	1.872	2.541	1.341	2.188	2.719	2.819	0.704	0.980	0.487	0.489	0.810	1.175	1.467	0.720	0.946	0.578	0.134	0.452	1.550	1.211	1.091	0.951	0.214	0.162
3189	chr16	81649846	81708108	+	0	NA	intron (NM_030629, intron 3 of 20)	intron (NM_030629, intron 3 of 20)	-19982	NR_045112	100129617	Hs.657151	NR_045112		LOC100129617	-	uncharacterized LOC100129617	ncRNA	nan	0.886	1.876	3.313	1.197	0.565	3.122	0.141	0.066	1.066	0.511	3.242	3.868	0.083	0.053	0.562	0.755	0.257	0.454	3.898	4.637	2.165	0.719	0.851	0.825	1.125	1.439	2.414	2.774	1.226	0.993	0.424	0.638	0.797	0.703	0.282	0.494	2.793	1.324	0.192	0.271	0.259	0.265	3.122	3.242	0.459	0.928	0.283	0.112
3569	chr17	75259040	75286617	+	0	NA	intron (NR_136503, intron 1 of 2)	AluSx1|SINE|Alu	-4664	NM_001113491	10801	Hs.440932	NM_006640	ENSG00000184640	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding	1.815	4.023	1.675	1.582	0.947	0.408	0.479	1.076	0.402	1.109	0.547	1.537	5.663	0.280	0.115	1.057	1.204	0.820	1.620	1.526	1.545	1.463	0.519	1.114	1.060	nan	1.309	2.861	4.419	1.490	1.218	0.843	1.492	2.162	2.415	0.633	0.885	nan	0.755	2.219	1.531	0.363	0.263	0.479	1.537	0.177	1.630	0.813	0.196
7286	chr7	54607432	54625608	+	0	NA	intron (NM_001317843, intron 3 of 3)	intron (NM_001317843, intron 3 of 3)	2663	NR_133927	222008	Hs.335933	NM_182546	ENSG00000170419	VSTM2A	VSTM2	V-set and transmembrane domain containing 2A	protein-coding	nan	1.194	0.754	0.150	0.177	0.142	1.005	0.098	0.088	0.066	0.201	0.200	2.859	0.096	0.140	0.313	0.227	0.428	0.536	2.722	2.060	0.123	0.067	0.054	0.055	0.185	0.309	2.130	2.520	0.553	0.509	0.113	0.136	1.658	1.028	0.201	0.423	1.815	1.011	4.908	0.034	0.383	0.183	1.005	0.200		2.303	0.016	0.144
6152	chr5	4625692	4641054	+	0	NA	Intergenic	Intergenic	-140221	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA	0.484	0.978	0.976	0.200	4.326	2.157	0.469	0.118	0.147	0.306	0.214	0.133	3.584	0.056	0.147	1.439	2.473	0.798	nan	0.767	0.851	2.916	0.688	0.077	0.057	0.196	0.321	nan	0.607	nan	0.635	3.481	4.111	0.065	0.106	0.178	0.250	0.288	nan	0.011	1.176	0.019	0.144	0.469	0.133	0.056	0.541	4.452	0.056
6977	chr6	134662315	134681010	+	0	NA	Intergenic	MER53|DNA|hAT	-32466	NM_001143676	6446	Hs.510078	NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding	0.705	0.783	0.863	0.343	0.296	0.137	1.958	0.144	0.103	0.042	0.085	0.272	0.708	4.535	0.202	0.390	0.250	0.211	0.382	0.661	0.726	nan	0.387	0.322	0.298	0.375	0.586	0.714	0.498	0.452	0.239	0.149	0.198	0.089	0.093	0.261	nan	0.329	0.338	0.057	0.233	0.021	0.226	1.958	0.272	0.054	0.041	0.074	0.073
1593	chr11	95827106	95891478	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-201921	NM_016156	8898	Hs.181326	NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding	0.897	nan	0.718	0.112	0.283	0.137	0.522	0.621	0.080	0.129	0.124	0.041	0.499	0.423	0.129	0.715	0.538	0.926	nan	0.388	0.431	0.170	0.114	0.922	0.949	1.835	2.417	0.152	0.162	0.363	0.207	0.307	0.473	1.054	1.486	0.592	nan	0.463	0.477	0.122	0.122	0.299	0.159	0.522	0.041	0.085	0.028	0.072	0.335
705	chr1	182597886	182611667	+	0	NA	Intergenic	AluSx|SINE|Alu	20501	NR_036490	284648	Hs.253475	NR_036490	ENSG00000261504	LINC01686	-	long intergenic non-protein coding RNA 1686	ncRNA	nan	nan	5.127	0.942	0.889	0.520	0.751	0.336	0.163	2.371	0.676	0.687	0.707	0.039	0.127	2.692	4.636	0.696	1.105	2.872	nan	3.727	1.245	nan	2.795	1.395	1.969	4.017	2.754	3.653	4.938	1.022	1.785	2.203	2.547	1.313	nan	3.155	1.608	0.319	0.641	0.695	0.393	0.751	0.687	0.339	2.303	0.885	0.961
6291	chr5	63940362	63962765	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-34572	NM_001164442	100132916	Hs.591776	NM_001164442	ENSG00000145642	FAM159B	-	family with sequence similarity 159 member B	protein-coding	0.654	1.244	0.594	0.146	0.246	0.149	0.172	0.114	0.092	0.077	0.085	0.027	0.218	0.135	0.127	0.219	0.122	0.216	0.213	0.242	0.318	4.185	1.058	0.129	0.152	0.186	0.302	0.445	0.336	0.316	0.143	0.131	0.160	1.057	0.601	0.204	0.325	0.789	0.520	0.014	0.103	0.181	0.068	0.172	0.027	0.017	0.027	0.044	0.110
4763	chr2	235857864	235920788	+	0	NA	intron (NM_014521, intron 1 of 5)	L1M5|LINE|L1	28698	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3 domain binding protein 4	protein-coding	1.070	nan	1.498	3.402	2.122	1.171	1.401	0.567	0.092	1.114	0.620	4.412	4.596	0.183	0.090	1.018	1.510	3.656	8.564	3.021	2.960	2.210	0.653	0.786	0.802	0.985	1.650	3.389	nan	0.876	0.790	0.826	1.426	0.490	0.567	0.963	1.490	0.973	0.570	1.674	0.447	0.106	0.700	1.401	4.412	0.229	0.600	0.412	0.291
1720	chr11	126454686	126479681	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	-55490	NR_120532	101929427	Hs.600341	NR_120532	ENSG00000254607	LOC101929427	-	uncharacterized LOC101929427	ncRNA	0.920	2.706	0.647	0.482	0.762	0.398	2.400	0.077	0.058	0.311	0.203	1.448	5.776	0.022	0.120	0.517	0.644	0.534	1.155	2.075	1.950	2.991	0.696	0.133	0.151	0.315	0.567	1.378	1.826	0.553	0.493	0.641	0.760	0.444	0.759	0.408	nan	1.366	0.856	4.864	1.305	0.107	0.315	2.400	1.448	0.136	0.069	0.157	0.361
5786	chr3	193489294	193511685	+	0	NA	Intergenic	Intergenic	-155368	NR_046634	100873941	Hs.679364	NR_046634	ENSG00000224855	OPA1-AS1	-	OPA1 antisense RNA 1	ncRNA	nan	1.905	0.840	0.726	0.668	0.397	0.455	0.257	0.157	0.266	0.212	0.388	nan	0.085	0.111	0.769	1.001	1.238	6.311	0.418	0.512	1.753	0.836	0.476	0.527	0.347	0.665	1.420	1.397	0.702	0.315	0.885	0.870	0.392	0.528	0.428	0.586	1.114	0.695	1.698	0.186	0.076	0.372	0.455	0.388	0.216	0.235	0.243	0.176
4471	chr2	112938386	112943081	+	0	NA	intron (NM_153214, intron 6 of 7)	intron (NM_153214, intron 6 of 7)	44771	NM_153214	129804	Hs.437696	NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding	0.767	nan	1.208	3.198	0.798	0.410	2.131	0.166		2.196	1.265	6.338	nan	0.039	0.085	0.337	0.479	0.227	0.401	22.015	nan	9.352	2.226	0.426	0.715	0.212	0.464	14.519	17.248	0.420	0.566	0.271	0.484	2.675	1.741	0.192	0.209	2.324	1.397	10.515	5.245	0.282	0.067	2.131	6.338	0.062	2.798	0.021	
912	chr1	230860273	230897715	+	0	NA	Intergenic	AluSx1|SINE|Alu	-4136	NM_001319676	10753	Hs.498021	NM_006615	ENSG00000135773	CAPN9	GC36|nCL-4	calpain 9	protein-coding	2.206	1.098	3.581	2.673	3.025	1.636	0.429	0.094	0.117	0.671	0.272	1.662	0.930	0.055	0.093	0.566	0.512	0.653	0.844	1.414	1.522	nan	0.618	0.918	0.908	0.917	1.371	nan	4.184	2.006	1.977	0.364	0.689	2.875	2.081	0.362	0.553	nan	1.678	0.284	0.756	0.572	0.637	0.429	1.662	1.161	2.173	0.687	0.128
1432	chr11	60520264	60537245	+	0	NA	intron (NM_152717, intron 1 of 5)	intron (NM_152717, intron 1 of 5)	4414	NR_103481	219995	Hs.207465	NM_152717	ENSG00000166961	MS4A15	-	membrane spanning 4-domains A15	protein-coding	nan	0.754	0.582	0.232	1.732	0.767	0.121	0.105	0.133	0.799	0.622	2.167	0.424	0.096	0.122	0.361	0.262	0.174	0.255	0.558	0.555	6.444	2.590	0.347	0.367	0.224	0.438	0.191	0.264	0.305	0.147	0.182	0.231	1.567	1.195	0.099	0.143	3.562	1.928	0.033	0.066	0.419	0.024	0.121	2.167	0.023	0.039	0.041	0.051
1930	chr12	48432352	48436862	+	0	NA	Intergenic	Intergenic	-36322	NM_033150	1280	Hs.408182	NM_001844	ENSG00000139219	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen type II alpha 1 chain	protein-coding	0.780	nan	0.646	0.060	0.177	0.212	0.080	0.091	0.108	0.174	0.255	0.079	0.111	0.064	0.065	2.719	3.742	9.747	5.899	0.575	0.740	0.841	0.423	0.816	0.803	0.290	0.518	0.316	0.377	0.190	0.174	1.535	2.546	0.142	0.248	0.209	0.357	0.544	0.609	0.036	0.098	0.041	0.071	0.080	0.079		0.047	1.672	0.054
5851	chr4	25154374	25163681	+	0	NA	intron (NM_016955, intron 2 of 10)	MLT1F1|LTR|ERVL-MaLR	3177	NM_016955	51091	Hs.253305	NM_016955	ENSG00000109618	SEPSECS	LP|PCH2D|SLA|SLA/LP	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	1.886	1.097	nan	2.964	1.811	1.005	1.531	1.324	0.189	2.271	1.251	3.349	3.087	1.379	0.124	3.252	4.011	3.658	5.203	3.591	4.053	2.807	1.029	5.179	5.299	2.192	2.293	2.284	3.881	2.266	2.085	1.597	2.329	1.422	1.533	1.281	1.890	nan	1.897	0.949	2.200	0.225	1.033	1.531	3.349	0.188	0.632	1.365	0.518
923	chr1	232748710	232767465	+	0	NA	Intergenic	Intergenic	-106733	NM_020808	57568	Hs.745009	NM_020808	ENSG00000116991	SIPA1L2	SPAL2	signal induced proliferation associated 1 like 2	protein-coding	1.808	3.132	2.807	1.556	4.179	2.172	1.301	1.278	0.214	1.035	0.396	1.862	3.172	0.062	0.078	0.456	0.489	2.562	5.641	1.259	1.345	nan	0.721	0.242	0.262	1.790	2.281	nan	2.499	0.787	0.564	0.438	0.739	1.873	2.604	0.419	0.695	nan	1.018	1.700	0.533	0.538	0.983	1.301	1.862	0.617	0.965	0.387	0.158
2051	chr12	81857010	81870266	+	0	NA	intron (NM_001220474, intron 2 of 30)	MLT1A|LTR|ERVL-MaLR	42532	NM_001282536	8499	Hs.506216	NM_003625	ENSG00000139220	PPFIA2	-	PTPRF interacting protein alpha 2	protein-coding	0.827	0.796	0.767	0.131	0.284	0.169	0.211	0.159	0.170	0.296	0.316	0.136	0.399	0.041	0.071	0.369	0.381	0.386	0.430	0.479	0.640	0.404	0.258	0.274	0.342	3.898	4.610	0.589	0.601	1.865	1.482	0.132	0.298	1.237	1.491	0.514	0.908	0.838	0.710	0.072	0.099	0.193	0.042	0.211	0.136	0.123	0.054	0.052	0.215
5382	chr3	56809766	56822176	+	0	NA	intron (NM_001128615, intron 4 of 12)	intron (NM_001128615, intron 4 of 12)	-6226	NM_001128616	50650	Hs.476402	NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding	1.391	1.379	nan	0.376	0.387	0.245	0.140	0.179	0.090	0.227	0.348	0.722	2.045	0.053	0.100	0.537	0.543	0.422	0.968	0.641	0.743	1.107	0.380	0.383	0.339	0.594	1.228	3.366	2.876	nan	0.315	0.396	0.767	0.685	0.615	0.174	0.286	1.802	1.044	1.578	0.570	0.129	0.013	0.140	0.722	0.205	2.950	0.312	0.102
4968	chr20	45521296	45531719	+	0	NA	intron (NM_005244, intron 1 of 15)	intron (NM_005244, intron 1 of 15)	3244	NM_172110	2139	Hs.472877	NM_005244	ENSG00000064655	EYA2	EAB1	EYA transcriptional coactivator and phosphatase 2	protein-coding	nan	nan	1.053	0.403	2.776	1.259	0.505	0.064	0.095	0.572	0.259	4.030	0.744	0.104	0.120	0.516	0.355	0.762	1.021	2.949	3.059	nan	0.776	1.652	1.585	0.903	1.262	2.349	3.669	14.831	16.461	1.361	1.422	3.071	2.085	5.532	6.140	0.641	0.353	0.127	0.043	1.085	1.110	0.505	4.030	1.249	1.782	0.939	3.182
8034	chr9	7264389	7278001	+	0	NA	Intergenic	Intergenic	513554	NM_001304341	23081	Hs.709425	NM_015061	ENSG00000107077	KDM4C	GASC1|JHDM3C|JMJD2C|TDRD14C	lysine demethylase 4C	protein-coding	0.617	1.460	0.679	0.212	0.317	0.135	0.253	0.082	0.097	0.247	0.193	0.318	2.268	0.016	0.070	0.184	0.098	0.246	0.328	0.872	1.104	1.531	0.433	0.122	0.117	0.368	0.644	0.526	0.512	0.298	0.218	0.155	0.369	1.618	1.171	0.192	nan	2.104	1.486	5.930	0.280	0.629	0.147	0.253	0.318	0.015	1.132	0.066	0.009
6089	chr4	182335587	182343443	+	0	NA	Intergenic	Intergenic	-259213	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA	nan	0.778	nan	0.085	0.987	0.593	0.137	0.086	0.205	0.358	0.211	0.320	0.329	0.028	0.090	0.187	0.171	0.538	1.639	0.536	0.598	9.315	3.735	1.456	1.645	0.100	0.144	0.689	0.956	0.284	0.176	0.184	0.423	1.229	1.733	0.122	0.091	0.452	0.357	0.599	1.508	0.314	0.050	0.137	0.320	0.004	0.270	0.046	0.031
2404	chr13	101089757	101096965	+	0	NA	intron (NM_001127692, intron 19 of 22)	intron (NM_001127692, intron 19 of 22)	39908	NR_047686	100885777	Hs.662554	NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA	0.900	1.639	1.290	0.147	0.592	0.166	2.478	0.362	0.102	1.221	1.075	0.366	0.552	0.237	0.096	0.587	0.566	0.261	0.336	0.442	0.624	7.261	2.586	0.217	0.207	0.302	nan	0.360	0.311	0.411	0.187	0.508	0.895	10.289	13.296	0.378	nan	0.310	0.170	0.505	0.354	2.134	0.108	2.478	0.366	0.215	0.127	0.481	0.068
2611	chr14	57460922	57479977	+	0	NA	Intergenic	Intergenic	190548	NR_029385	100309464	Hs.637962	NR_029385	ENSG00000248550	OTX2-AS1	OTX2OS1	OTX2 antisense RNA 1 (head to head)	ncRNA	2.931	nan	2.395	0.982	0.549	0.336	0.397	0.099	0.094	0.090	0.150	0.872	0.570	0.046	0.119	0.366	0.248	0.303	0.384	0.502	0.531	1.963	0.435	0.486	0.507	0.132	0.203	1.091	0.997	4.153	4.032	0.724	1.564	0.796	0.773	4.105	11.497	nan	0.567	0.041	0.095	0.114	0.674	0.397	0.872	0.132	0.096	1.474	2.068
4425	chr2	87794749	87814767	+	0	NA	intron (NR_024204, intron 3 of 3)	MIRc|SINE|MIR	49784	NR_024206	112597	Hs.652166	NM_052871	ENSG00000222041	CYTOR	C2orf59|LINC00152|NCRNA00152	cytoskeleton regulator RNA	ncRNA	nan	3.047	nan	0.916	1.005	0.577	1.060	1.556	0.186	1.409	0.769	4.494	1.524	1.067	0.121	2.849	3.471	2.052	3.422	1.915	2.539	1.060	0.471	1.909	1.881	0.473	0.739	1.120	1.343	0.393	0.228	1.600	1.752	1.002	0.905	0.214	0.346	0.863	0.631	0.429	0.098	0.271	0.095	1.060	4.494	0.116	0.933	0.899	0.136
65	chr1	9068885	9089013	+	0	NA	intron (NM_207420, intron 4 of 11)	intron (NM_207420, intron 4 of 11)	7455	NM_207420	155184	Hs.531239	NM_207420	ENSG00000197241	SLC2A7	GLUT7	solute carrier family 2 member 7	protein-coding	0.803	nan	1.005	1.374	0.240	0.096	0.129	0.096	0.136	0.140	0.103	0.047	0.409	0.097	0.121	0.515	0.451	0.298	0.368	1.152	1.101	0.078	0.082	2.256	2.488	0.378	nan	nan	7.452	nan	0.249	0.273	0.343	0.057	0.060	0.256	0.347	0.354	0.420	0.321	0.300	0.028	0.199	0.129	0.047	0.081	0.698	0.079	0.079
7343	chr7	80101539	80120060	+	0	NA	intron (NM_001102386, intron 3 of 7)	MER4D|LTR|ERV1	30526	NM_001102386	346562	Hs.335049	NM_001102386	ENSG00000214415	GNAT3	GDCA	G protein subunit alpha transducin 3	protein-coding	0.894	0.618	0.787	0.148	0.351	0.130	0.118	0.542	0.165	0.153	0.156	0.078	0.206	0.120	0.191	0.615	0.308	3.882	7.262	0.298	0.357	0.425	0.159	1.748	1.904	0.701	0.738	0.240	0.213	0.407	0.183	0.164	0.290	0.157	0.278	0.218	nan	0.590	0.586	0.030	0.071	0.016	0.107	0.118	0.078	0.052	0.039	0.054	0.040
6887	chr6	105836615	105854894	+	0	NA	exon (NM_002726, exon 2 of 15)	exon (NM_002726, exon 2 of 15)	5245	NM_002726	5550	Hs.436564	NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding	1.528	nan	nan	0.576	0.725	0.483	0.867	0.355	0.071	0.172	0.250	0.432	1.198	0.824	0.127	14.666	16.232	0.735	1.730	1.195	nan	0.930	0.322	0.852	0.921	0.801	1.113	0.862	1.083	nan	1.317	0.486	1.269	0.919	0.804	0.594	0.817	0.736	0.602	0.206	0.439	0.167	0.412	0.867	0.432	0.121	0.255	0.184	0.149
5249	chr22	35895907	35923405	+	0	NA	Intergenic	L2a|LINE|L2	-27696	NM_014310	23551	Hs.474711	NM_014310	ENSG00000100302	RASD2	MGC:4834|Rhes|TEM2	RASD family member 2	protein-coding	nan	0.792	1.551	0.490	0.859	0.399	0.596	0.090	0.117	0.605	0.274	1.586	0.836	0.095	0.061	4.944	5.690	4.306	nan	2.144	2.507	1.610	0.590	2.522	2.759	0.278	nan	1.095	1.168	2.351	2.187	4.079	5.436	1.444	1.680	0.574	nan	1.411	0.796	0.216	0.372	0.191	0.631	0.596	1.586	0.149	0.312	4.809	0.634
6093	chr4	182513198	182548403	+	0	NA	Intergenic	Intergenic	-450498	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA	nan	0.690	nan	0.028	0.675	0.350	0.134	0.070	0.078	0.246	0.137	0.242	0.157	0.369	0.092	0.199	0.118	0.181	0.299	0.261	0.292	9.921	3.651	0.109	0.117	0.078	0.164	0.348	0.258	0.295	0.145	0.062	0.117	0.986	1.061	0.081	0.140	0.588	0.404	0.144	0.076	0.187	0.213	0.134	0.242	0.008	0.029	0.031	0.038
2742	chr14	93342147	93359510	+	0	NA	Intergenic	Intergenic	22999	NR_135253	101929002	Hs.639356	NR_135253	ENSG00000258499	LOC101929002	-	uncharacterized LOC101929002	ncRNA	1.246	1.228	nan	0.748	4.383	2.013	2.409	0.133	0.162	0.840	0.575	2.752	2.636	0.038	0.105	0.295	0.189	0.139	0.191	3.464	3.973	1.032	0.433	0.311	0.242	0.307	0.479	1.118	1.554	1.002	0.635	0.249	0.274	0.586	0.621	0.864	2.483	nan	1.836	1.286	1.340	0.126	0.892	2.409	2.752	0.028	0.380	0.063	0.639
5909	chr4	55794708	55814108	+	0	NA	Intergenic	Intergenic	187354	NM_002253	3791	Hs.479756	NM_002253	ENSG00000128052	KDR	CD309|FLK1|VEGFR|VEGFR2	kinase insert domain receptor	protein-coding	nan	0.560	0.532	0.286	0.488	0.215	0.152	0.090	0.099	0.227	0.175	0.888	0.965	0.028	0.069	0.397	0.310	0.247	0.334	1.108	1.395	0.229	0.137	0.234	0.216	0.214	0.341	4.152	3.644	0.473	0.197	0.119	0.271	0.067	0.081	0.156	0.154	4.918	2.756	0.184	0.339	0.034	0.008	0.152	0.888	0.030	0.602	0.030	0.147
5528	chr3	127493075	127516670	+	0	NA	intron (NM_001003794, intron 2 of 7)	intron (NM_001003794, intron 2 of 7)	36853	NM_007283	11343	Hs.277035	NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding	2.027	nan	1.605	0.520	1.000	0.482	0.356	1.107	0.298	2.401	1.117	0.639	1.855	0.060	0.085	0.480	0.739	0.211	0.426	1.493	1.234	3.163	1.077	0.390	0.404	2.629	nan	2.041	1.695	2.915	2.486	0.455	0.718	0.667	0.734	0.545	0.936	2.698	1.331	4.426	1.853	0.270	0.953	0.356	0.639	0.922	0.555	0.285	0.272
1199	chr10	103472041	103477932	+	0	NA	Intergenic	AluJb|SINE|Alu	-19934	NM_001323541	6468	Hs.500822	NM_022039	ENSG00000107829	FBXW4	DAC|FBW4|FBWD4|SHFM3|SHSF3	F-box and WD repeat domain containing 4	protein-coding	nan	nan	1.056	0.208	0.257	0.299	0.109	0.088	0.098	0.187	0.100	0.666	0.364	0.073	0.100	2.514	1.767	7.969	4.438	0.261	0.360	1.962	0.729	0.458	0.298	0.217	nan	0.631	1.097	0.194	0.099	0.377	0.669	0.313	0.719	0.135	nan	0.796	0.564	0.017	0.052	0.033	0.053	0.109	0.666		0.092	0.119	0.041
2084	chr12	94115990	94146307	+	0	NA	intron (NR_110092, intron 1 of 2)	intron (NR_110092, intron 1 of 2)	451	NR_110093	101928731	Hs.659971	NR_110092	ENSG00000258274	LOC101928731	-	uncharacterized LOC101928731	ncRNA	0.923	0.860	1.167	0.221	0.249	0.148	0.346	2.192	0.220	0.163	0.192	0.340	nan	0.133	0.108	0.601	0.639	0.810	1.100	0.588	0.661	1.715	0.556	0.376	0.385	6.234	nan	0.771	nan	0.767	0.712	0.397	0.631	0.599	0.788	0.349	0.715	1.658	1.112	0.989	0.124	0.452	0.045	0.346	0.340	0.205	0.442	0.649	0.159
2473	chr13	114630466	114640016	+	0	NA	Intergenic	L1ME1|LINE|L1	-3277	NR_047495	100861555	Hs.353773	NR_047495	ENSG00000260910	LINC00565	-	long intergenic non-protein coding RNA 565	ncRNA	1.271	nan	0.921	0.313	0.229	0.050	1.384	0.989	0.203	0.114	0.119	1.040	2.812	0.045	0.077	0.703	0.580	0.179	0.644	0.942	0.770	0.756	0.494	0.096	0.098	0.096	0.223	0.341	0.612	0.349	0.164	0.472	0.465	0.424	0.303	0.091	0.216	0.332	0.185	7.120	0.298	0.050	0.024	1.384	1.040	0.143	0.369	0.041	0.038
656	chr1	170553448	170565291	+	0	NA	Intergenic	Intergenic	-57619	NR_125958	101928650	Hs.676662	NR_125958		LOC101928650	-	uncharacterized LOC101928650	ncRNA	nan	nan	nan	0.111	0.213	0.081	0.386	6.761	0.186	0.132	0.223	0.121	0.353	0.073	0.104	0.370	0.271	0.575	1.074	nan	0.689	0.146	0.101	0.082	0.059	8.792	10.353	0.327	0.320	0.846	0.830	0.324	0.517	0.127	0.173	0.397	nan	0.339	0.506	0.033	0.334	0.016	0.007	0.386	0.121	0.041	0.503	0.109	0.178
2921	chr15	67437946	67447711	+	0	NA	intron (NM_001145103, intron 1 of 8)	(GAAA)n|Simple_repeat|Simple_repeat	12469	NM_001145103	4088	Hs.727986	NM_005902	ENSG00000166949	SMAD3	HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3	SMAD family member 3	protein-coding	0.763	1.088	nan	0.278	0.351	0.331	0.722	1.354	0.388	0.143	0.186	0.246	0.897	0.244	0.105	0.281	0.297	7.451	13.869	0.209	0.371	nan	0.199	0.323	0.287	0.351	0.561	0.906	0.900	0.448	0.229	0.251	0.462	0.407	0.578	0.162	0.247	0.357	0.334	0.017	0.147	0.059	0.089	0.722	0.246	0.109	0.177	0.225	0.050
4726	chr2	221364052	221379467	+	0	NA	Intergenic	Intergenic	-600473	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	ncRNA	nan	1.222	0.833	1.077	0.738	0.360	0.307	0.126	0.083	0.408	0.202	1.144	nan	0.021	0.105	0.394	0.286	0.204	0.417	0.592	0.672	1.777	0.763	0.208	0.255	4.162	4.769	1.188	nan	0.635	0.548	0.160	0.227	0.374	0.388	1.070	nan	0.564	0.473	3.677	0.102	0.085	0.049	0.307	1.144	0.045	0.287	0.038	0.490
3468	chr17	55516567	55522419	+	0	NA	intron (NM_170721, intron 5 of 9)	AluSc|SINE|Alu	81465	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA	2.659	2.267	1.337	0.998	3.895	1.759	4.445	0.270	0.218	0.561	0.264	2.014	2.492	0.106	0.075	0.901	1.569	2.701	7.543	2.951	2.583	2.638	0.707	nan	1.014	1.382	1.874	nan	nan	2.219	1.864	0.803	1.322	3.851	4.906	1.106	2.663	2.446	1.367	3.000	1.570	0.928	0.559	4.445	2.014	1.044	4.836	0.328	1.295
435	chr1	107897589	107923334	+	0	NA	intron (NM_001330665, intron 3 of 6)	AluSc5|SINE|Alu	219770	NM_001113228	22854	Hs.133046	NM_014917	ENSG00000162631	NTNG1	Lmnt1	netrin G1	protein-coding	1.117	nan	nan	0.245	0.379	0.181	0.502	0.134	0.105	0.127	0.079	0.042	0.391	0.046	0.138	0.329	0.190	0.241	0.385	0.537	nan	2.476	0.873	0.236	0.238	6.699	7.194	nan	nan	0.391	0.186	0.155	0.246	0.756	0.649	0.574	nan	0.497	0.518	0.105	0.069	0.156	0.156	0.502	0.042	0.053	0.044	0.035	0.278
3195	chr16	84297654	84319203	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-19884	NM_021197	58189	Hs.36688	NM_021197	ENSG00000103175	WFDC1	PS20	WAP four-disulfide core domain 1	protein-coding	nan	0.674	0.878	0.127	0.216	0.127	0.505	0.080	0.098	0.072	0.073	0.172	0.346	0.040	0.078	0.305	0.274	0.149	0.273	0.254	0.314	0.921	0.302	0.246	0.209	0.149	0.211	0.514	0.594	2.539	1.815	0.184	0.212	0.091	0.142	1.741	4.884	0.371	0.379	0.083	0.116	0.018	0.028	0.505	0.172	0.166	0.075	0.014	1.473
1482	chr11	67230597	67237678	+	0	NA	intron (NR_073412, intron 4 of 6)	intron (NR_073412, intron 4 of 6)	2611	NR_073409	80194	Hs.288761	NM_025124	ENSG00000172663	TMEM134	-	transmembrane protein 134	protein-coding	nan	1.766	3.696	3.506	2.673	1.245	2.404	0.561	0.160	1.165	0.486	4.007	4.940	2.220	0.085	4.246	5.927	2.900	3.893	6.380	5.962	7.191	2.840	5.030	5.056	1.596	2.324	4.450	5.057	1.762	1.718	2.098	3.090	1.654	1.411	1.009	1.280	2.109	0.907	1.382	2.364	0.308	1.663	2.404	4.007	1.443	4.729	1.023	0.583
885	chr1	224516804	224519124	+	0	NA	promoter-TSS (NM_001243146)	promoter-TSS (NM_001243146)	-73	NM_206840	4931	Hs.497867	NM_002533	ENSG00000143748	NVL	NVL2	nuclear VCP-like	protein-coding	6.545	7.068	7.159	10.917	7.974	4.584	7.464	4.626	0.419	3.231	1.880	6.378	12.498	5.243	0.125	10.921	8.939	15.793	22.875	12.448	13.033	10.537	7.919	21.371	22.513	5.365	7.006	11.731	15.644	11.701	9.890	6.234	9.898	8.323	10.983	10.936	10.852	6.418	2.780	4.679	2.219	1.800	3.647	7.464	6.378	1.171	2.352	1.803	3.429
1412	chr11	47426569	47431311	+	0	NA	non-coding (NR_134854, exon 1 of 11)	non-coding (NR_134854, exon 1 of 11)	113	NR_134854	91252	Hs.523664	NM_152264	ENSG00000165915	SLC39A13	LZT-Hs9	solute carrier family 39 member 13	protein-coding	nan	2.724	2.496	2.285	2.500	1.317	2.216	1.668	0.250	1.573	1.007	2.662	5.576	2.787	0.121	6.168	7.634	11.203	9.333	5.478	5.083	5.879	2.257	5.728	6.116	2.669	3.969	1.432	2.381	2.554	2.894	2.600	5.651	2.954	2.588	1.777	nan	2.354	1.205	2.008	3.080	0.436	0.875	2.216	2.662	1.063	2.368	2.248	0.800
5075	chr21	24829761	24840304	+	0	NA	Intergenic	L1MDa|LINE|L1	-77876	NR_040254	266917	Hs.145622	NR_040254	ENSG00000228592	D21S2088E	-	D21S2088E	ncRNA	0.798	0.756	0.690	0.050	0.268	0.106	0.098	0.092	0.092	0.059	0.062	0.023	0.361	0.030	0.105	0.327	0.204	0.167	0.316	0.243	0.362	0.326	0.137	0.053	0.031	0.561	0.621	0.215	0.304	0.421	0.196	0.068	0.137	0.272	0.204	0.194	nan	11.124	6.027	0.027	0.017	0.046	0.091	0.098	0.023	0.037	0.019	0.019	0.082
228	chr1	38476919	38483309	+	0	NA	intron (NM_016037, intron 1 of 7)	intron (NM_016037, intron 1 of 7)	1730	NM_016037	51118	Hs.472038	NM_016037	ENSG00000183520	UTP11	CGI-94|CGI94|UTP11L	UTP11, small subunit processome component homolog (S. cerevisiae)	protein-coding	23.140	nan	3.220	4.049	1.224	0.472	1.194	1.515	0.250	1.405	0.554	2.828	3.382	1.696	0.235	2.203	1.719	2.420	3.497	3.632	3.390	nan	1.031	4.960	4.983	2.810	3.734	9.872	11.795	nan	2.803	2.746	3.656	0.957	1.399	3.398	6.375	1.834	nan	1.149	0.778	0.193	0.758	1.194	2.828	0.575	0.894	1.149	1.962
3783	chr18	45788264	45884740	+	0	NA	intron (NM_001318841, intron 2 of 4)	AluY|SINE|Alu	99291	NM_001318841	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding	nan	1.653	0.990	2.157	0.582	0.292	1.882	0.060	0.048	0.291	0.197	1.126	4.569	0.038	0.072	0.497	0.631	0.744	1.325	2.198	2.589	3.247	0.995	0.183	0.203	0.247	0.401	3.210	2.346	0.756	0.656	0.284	0.385	1.903	2.127	0.210	nan	5.365	2.603	3.396	1.128	0.487	0.281	1.882	1.126	0.144	2.107	0.160	0.069
7772	chr8	82641285	82646158	+	0	NA	promoter-TSS (NM_152284)	promoter-TSS (NM_152284)	-967	NM_152284	92421	Hs.183861	NM_152284	ENSG00000164695	CHMP4C	SNF7-3|Shax3|VPS32C	charged multivesicular body protein 4C	protein-coding	2.230	nan	nan	11.054	8.386	4.883	1.078	0.897	0.098	2.442	1.310	2.162	12.578	0.403	0.113	5.332	6.151	5.124	5.784	8.690	4.125	11.119	4.398	19.974	21.371	0.252	0.388	13.679	13.933	1.092	0.729	8.440	8.876	6.034	7.402	0.325	0.685	8.503	4.652	5.644	4.719	0.585	2.637	1.078	2.162	0.080	3.267	3.994	0.077
829	chr1	207219184	207235814	+	0	NA	intron (NM_001018053, intron 1 of 14)	AluSc|SINE|Alu	879	NM_006212	5208	Hs.282702	NM_006212	ENSG00000123836	PFKFB2	PFK-2/FBPase-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding	1.515	3.090	3.292	2.344	2.882	1.411	1.819	0.885	0.214	1.326	0.604	3.919	3.823	1.036	0.130	1.587	1.859	4.735	7.162	9.220	10.646	3.605	1.253	nan	nan	1.666	2.103	4.930	5.836	2.073	2.027	0.840	1.315	2.305	2.927	1.946	2.596	2.887	1.486	2.243	3.793	0.407	1.144	1.819	3.919	0.350	0.872	0.333	0.497
1521	chr11	73484841	73504330	+	0	NA	Intergenic	AluJo|SINE|Alu	-4332	NR_134660	51642	Hs.503239	NM_016055	ENSG00000175581	MRPL48	CGI-118|HSPC290|L48MT|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	nan	2.240	1.293	3.491	3.256	1.842	1.552	0.731	0.239	1.275	0.617	2.125	5.157	2.282	0.213	3.191	2.949	2.069	2.804	3.582	3.414	6.362	3.789	10.170	10.937	2.360	2.888	5.400	6.187	2.555	2.404	3.820	3.413	3.785	5.374	2.200	3.273	2.411	1.374	3.523	2.956	0.595	1.732	1.552	2.125	0.559	1.646	1.817	0.931
5029	chr20	60695958	60705200	+	0	NA	intron (NM_144703, intron 2 of 8)	intron (NM_144703, intron 2 of 8)	3062	NM_144703	149986	Hs.105379	NM_144703	ENSG00000149657	LSM14B	C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3	LSM family member 14B	protein-coding	2.611	2.499	2.787	2.749	1.935	0.908	1.870	1.543	0.366	1.188	0.675	2.126	5.854	1.687	0.150	2.541	nan	1.563	2.070	3.861	3.631	3.700	1.700	5.352	5.392	1.304	1.881	3.749	4.731	2.141	1.800	1.327	2.359	1.177	1.490	1.964	2.478	2.386	1.302	2.155	2.850	0.620	1.327	1.870	2.126	0.625	3.125	0.919	1.071
1862	chr12	20095683	20107513	+	0	NA	Intergenic	Intergenic	-66021	NR_040098	100506393	Hs.658356	NR_040098	ENSG00000256287	LOC100506393	-	uncharacterized LOC100506393	ncRNA	nan	nan	nan	0.326	1.233	0.678	0.087	0.238	0.067	0.199	0.152	0.056	0.531	0.055	0.093	0.199	0.178	0.186	0.288	0.401	0.594	0.837	0.298	0.281	0.238	4.154	4.723	0.850	0.675	1.643	1.728	0.068	0.193	0.659	0.729	0.253	0.632	0.399	0.356	0.018	0.248	0.112	0.046	0.087	0.056	0.008	0.248	0.041	0.334
2352	chr13	78271058	78274487	+	0	NA	promoter-TSS (NR_037438)	promoter-TSS (NR_037438)	-244	NM_001040153	122060	Hs.349955	NM_144595	ENSG00000139737	SLAIN1	C13orf32	SLAIN motif family member 1	protein-coding	nan	2.298	5.693	2.913	2.343	0.851	5.261	0.239		1.102	0.678	4.360	11.392	0.536	0.074	4.416	6.635	3.817	4.036	11.816	7.058	9.042	4.023	2.033	1.858	1.317	1.290	1.771	3.247	nan	8.634	2.979	7.540	2.786	2.057	4.429	nan	0.867	0.531	0.648	5.455	0.951	8.928	5.261	4.360	1.040	1.652	1.922	1.550
5420	chr3	88003458	88023864	+	0	NA	intron (NM_001322208, intron 2 of 2)	intron (NM_001322208, intron 2 of 2)	-18065	NM_000866	3355	Hs.248136	NM_000866	ENSG00000179097	HTR1F	5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77	5-hydroxytryptamine receptor 1F	protein-coding	nan	0.674	0.501	0.060	0.084	0.031	0.031	0.033	0.024	0.055	0.053	0.035	0.156	0.032	0.082	0.502	0.352	5.971	0.998	0.220	0.272	0.144	0.090	0.274	0.267	0.100	0.176	0.157	0.179	0.307	0.135	0.120	0.302	0.049	0.057	0.148	0.403	0.318	0.321	0.003	0.053	0.005	0.027	0.031	0.035	0.009	0.025	0.097	0.036
1082	chr10	27441914	27446624	+	0	NA	promoter-TSS (NM_014263)	promoter-TSS (NM_014263)	516	NR_135469	84930	Hs.276905	NM_032844	ENSG00000120539	MASTL	GREATWALL|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase like	protein-coding	5.062	8.843	5.426	1.724	5.734	3.030	2.726	10.781	1.503	2.547	1.041	5.930	10.377	5.698	0.184	7.375	6.907	11.320	16.890	6.599	4.545	11.412	6.400	13.460	14.642	5.916	7.212	5.347	10.192	4.270	4.421	2.821	5.276	4.660	5.927	6.831	6.878	3.093	1.811	2.271	3.724	0.586	2.091	2.726	5.930	1.300	2.027	1.919	1.788
121	chr1	19658029	19696789	+	0	NA	intron (NM_004930, intron 6 of 8)	intron (NM_004930, intron 6 of 8)	38669	NM_001040125	54896	Hs.647620	NM_017765	ENSG00000040487	PQLC2	-	PQ loop repeat containing 2	protein-coding	1.046	1.024	nan	2.130	0.345	0.207	0.346	0.145	0.079	0.097	0.079	0.176	4.619	0.151	0.115	0.346	0.393	0.391	0.590	1.210	1.458	1.035	0.234	0.440	nan	0.702	nan	2.800	2.828	nan	0.327	0.213	0.225	0.259	0.377	0.390	0.743	0.693	0.407	1.549	1.733	0.106	0.097	0.346	0.176	0.223	0.495	0.048	0.175
1066	chr10	21779212	21825064	+	0	NA	TTS (NM_207371)	TTS (NM_207371)	12473	NM_207371	387640	Hs.350848	NM_207371	ENSG00000180592	SKIDA1	C10orf140|DLN-1	SKI/DACH domain containing 1	protein-coding	2.916	1.896	1.625	2.981	2.910	1.478	1.348	3.100	0.344	1.062	0.632	1.701	2.013	9.238	0.198	4.261	4.337	1.408	2.510	1.830	1.574	4.730	1.611	1.148	1.086	3.230	4.097	2.604	4.246	3.800	4.496	2.024	3.350	3.088	2.618	4.715	5.255	1.730	0.994	1.920	1.631	0.717	1.571	1.348	1.701	0.484	1.411	1.828	1.871
487	chr1	144502892	144522518	+	0	NA	intron (NM_001278267, intron 52 of 130)	intron (NM_001278267, intron 52 of 130)	100014	NR_003242	767846	Hs.657186	NR_003242	ENSG00000270392	PFN1P2	C1orf152|COAS3	profilin 1 pseudogene 2	pseudo	1.381	nan	0.926	1.098	0.582	0.254	0.471	0.471	0.131	0.830	0.544	0.871	6.129	2.008	0.122	1.235	1.075	1.234	2.093	1.934	1.949	1.015	0.294	9.869	9.584	0.677	0.894	1.238	1.683	0.732	0.620	3.848	4.494	1.067	1.404	0.488	1.036	0.963	0.689	0.874	2.494	0.767	0.162	0.471	0.871	0.049	3.020	4.252	0.395
3175	chr16	73515453	73520205	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	97125	NR_038234	100506172	Hs.434230	NR_038234	ENSG00000258779	LINC01568	-	long intergenic non-protein coding RNA 1568	ncRNA	0.861	0.508	nan	0.272	0.697	0.237	0.275	0.032	0.034	0.165	0.069	0.105	0.244	0.023	0.086	3.113	3.645	11.196	7.911	0.392	0.367	0.052	0.088	0.824	1.071	1.155	1.720	0.331	0.315	0.552	0.497	1.196	1.300	0.197	0.187	0.116	0.183	0.934	0.664	0.043	0.056	0.039	0.100	0.275	0.105	0.061	0.063	0.313	0.127
4819	chr20	4033322	4066737	+	0	NA	Intergenic	AluJr|SINE|Alu	-53791	NM_001321749	11237	Hs.547576	NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding	0.877	1.599	0.828	0.142	0.315	0.149	0.179	0.469	0.125	0.088	0.119	0.075	0.708	0.064	0.092	2.809	3.740	0.471	0.775	0.456	0.515	0.293	0.124	0.791	0.814	0.661	1.034	0.517	0.619	0.554	0.249	0.643	0.913	0.104	0.147	0.334	0.749	0.606	0.513	0.143	0.201	0.023	0.019	0.179	0.075	0.088	0.240	0.306	0.137
3604	chr17	78537794	78630349	+	0	NA	intron (NM_001163034, intron 1 of 29)	intron (NM_001163034, intron 1 of 29)	65446	NM_001163034	57521	Hs.133044	NM_020761	ENSG00000141564	RPTOR	KOG1|Mip1	regulatory associated protein of MTOR complex 1	protein-coding	1.181	1.069	1.232	3.309	0.473	0.268	0.679	0.158	0.136	0.325	0.225	0.657	1.020	0.112	0.122	0.583	0.740	0.345	0.431	1.287	1.381	0.623	0.210	0.382	0.384	nan	1.031	3.734	3.902	1.083	0.764	0.578	0.673	0.479	0.532	1.352	3.141	nan	0.940	0.220	0.751	0.077	0.172	0.679	0.657	0.085	1.350	0.177	1.311
3081	chr16	19885561	19898689	+	0	NA	intron (NM_001304771, intron 1 of 3)	intron (NM_001304771, intron 1 of 3)	4108	NM_016235	51704	Hs.148685	NM_016235	ENSG00000167191	GPRC5B	RAIG-2|RAIG2	G protein-coupled receptor class C group 5 member B	protein-coding	1.824	1.637	nan	1.195	1.048	0.442	2.283	0.210	0.122	2.058	0.710	0.932	2.062	0.107	0.078	0.539	0.521	2.871	1.975	1.697	1.456	10.138	3.526	5.037	5.312	0.877	1.541	1.540	2.412	nan	1.006	0.551	1.145	4.833	5.055	0.387	0.886	2.864	1.516	0.675	0.272	2.154	0.254	2.283	0.932	0.834	0.093	0.497	0.340
4792	chr2	241756542	241771864	+	0	NA	Intergenic	MER45B|DNA|hAT-Tip100	-4478	NM_001330289	547	Hs.516802	NM_004321	ENSG00000130294	KIF1A	ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104	kinesin family member 1A	protein-coding	2.465	nan	0.608	4.224	6.788	3.396	3.028	0.014	0.062	1.810	1.110	4.939	5.175	2.526	0.150	5.138	5.798	2.312	2.691	5.812	4.859	3.996	1.499	4.389	4.063	0.739	1.122	4.833	6.620	2.140	2.449	2.290	3.935	2.294	2.025	0.976	0.975	2.593	1.202	2.549	1.789	0.542	2.492	3.028	4.939	0.364	1.568	1.425	0.209
3099	chr16	28832937	28837228	+	0	NA	intron (NM_001308230, intron 1 of 22)	CpG	713	NM_148415	11273	Hs.460499	NM_007245	ENSG00000168488	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2 like	protein-coding	7.441	4.873	7.003	12.350	10.730	4.932	8.507	4.736	0.449	2.522	1.108	9.162	19.356	8.231	0.204	6.716	7.228	7.423	10.326	11.419	10.717	13.913	7.436	22.673	23.749	4.606	6.468	14.573	20.017	12.136	13.410	7.594	11.798	11.583	13.598	7.080	9.768	4.397	2.091	8.986	6.245	3.434	6.079	8.507	9.162	2.782	5.172	3.811	2.588
6751	chr6	37785548	37788912	+	0	NA	promoter-TSS (NM_021943)	promoter-TSS (NM_021943)	-77	NM_021943	60685	Hs.36959	NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding	8.598	5.485	nan	9.164	7.186	4.628	8.168	7.855	1.055	2.842	1.414	12.368	17.972	6.503	0.235	9.081	10.565	8.328	nan	12.097	11.222	13.567	5.941	16.146	16.893	5.799	7.286	12.612	17.077	6.542	6.733	3.627	6.626	8.254	9.277	4.862	6.816	3.258	1.622	8.054	7.499	2.923	4.370	8.168	12.368	3.461	4.065	2.534	2.036
5115	chr21	38378133	38384202	+	0	NA	intron (NM_001317777, intron 2 of 2)	intron (NM_001317777, intron 2 of 2)	2304	NM_018962	53820	Hs.254560	NM_018962	ENSG00000183145	RIPPLY3	DSCR6	ripply transcriptional repressor 3	protein-coding	1.652	2.425	1.666	1.773	4.462	2.267	1.343	0.237	0.186	0.775	0.583	8.803	7.847	0.440	0.073	0.724	1.040	1.171	1.511	10.397	9.106	4.362	1.219	0.835	0.987	0.504	0.917	1.643	2.733	1.358	1.268	1.078	1.298	9.495	11.229	0.306	1.184	nan	1.759	2.237	3.314	3.705	1.428	1.343	8.803	0.113	0.568	0.508	0.148
3634	chr18	901429	912097	+	0	NA	intron (NM_001099733, intron 2 of 4)	CpG	1566	NM_001117	116	Hs.531719	NM_001117	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	3.912	1.734	1.001	7.570	0.687	0.330	0.477	0.096	0.046	1.438	0.622	1.102	20.744	0.133	0.129	0.239	0.126	0.079	0.067	3.942	3.246	nan	2.102	0.248	0.232	1.946	nan	4.425	4.000	nan	0.752	0.082	0.104	2.168	1.954	0.157	nan	nan	3.094	9.888	1.963	0.411	0.650	0.477	1.102	0.172	4.997		0.059
3760	chr18	41138683	41175547	+	0	NA	Intergenic	L3b|LINE|CR1	-299500	NM_020783	6860	Hs.8059	NM_020783	ENSG00000132872	SYT4	HsT1192	synaptotagmin 4	protein-coding	nan	0.847	1.233	0.251	0.709	0.391	0.314	0.107	0.044	0.464	0.236	0.104	0.312	0.035	0.063	0.399	0.234	0.207	0.329	0.563	0.679	5.699	3.841	0.084	0.087	0.446	0.597	0.678	0.621	0.444	0.248	0.103	0.127	2.189	2.140	0.244	nan	4.480	2.151	0.017	0.061	0.468	0.079	0.314	0.104	0.058	0.236	0.013	0.110
2278	chr13	39664756	39709276	+	0	NA	Intergenic	Intergenic	74568	NR_073109	387921	Hs.507783	NM_001012754	ENSG00000188811	NHLRC3	-	NHL repeat containing 3	protein-coding	1.335	1.178	1.486	0.379	0.262	0.122	0.878	0.084	0.058	0.394	0.221	1.220	0.430	0.059	0.090	0.943	0.934	0.126	0.156	3.538	3.644	4.390	1.454	0.164	0.141	0.314	0.496	0.702	0.660	0.753	0.391	0.260	0.547	1.043	1.469	1.571	5.274	0.972	0.613	0.131	0.436	0.156	0.038	0.878	1.220	0.019	0.104	0.107	1.548
4152	chr19	56057691	56074845	+	0	NA	Intergenic	MIR|SINE|MIR	-9359	NM_001199824	100130827	Hs.712129	NM_001199824	ENSG00000231274	SBK3	SGK110	SH3 domain binding kinase family member 3	protein-coding	1.071	0.843	1.904	0.559	0.736	0.466	0.180	0.319	0.217	0.842	0.544	0.411	0.336	4.235	0.218	0.453	0.326	0.175	0.316	0.718	0.914	2.533	0.713	0.171	0.137	0.445	0.649	0.357	0.538	1.069	0.690	0.482	0.462	0.440	0.439	0.471	1.029	1.603	0.819	0.162	0.104	0.055	0.051	0.180	0.411	0.264	0.237	0.075	0.172
4639	chr2	183898684	183904180	+	0	NA	intron (NM_205842, intron 1 of 31)	intron (NM_205842, intron 1 of 31)	2154	NM_205842	10787	Hs.603732	NM_013436	ENSG00000061676	NCKAP1	HEM2|NAP1|NAP125|p125Nap1	NCK associated protein 1	protein-coding	3.711	2.998	3.765	2.674	3.419	1.753	2.821	2.192	0.175	1.537	0.842	3.269	5.773	2.482	0.076	2.427	3.019	4.542	6.266	4.356	4.053	2.968	1.524	13.440	13.117	nan	3.903	10.146	15.537	4.525	4.881	2.196	5.072	1.819	1.825	5.931	5.351	1.604	0.708	1.500	1.413	0.363	1.665	2.821	3.269	1.065	1.458	1.040	1.352
7912	chr8	125285799	125293707	+	0	NA	Intergenic	Intergenic	-30114	NR_125420	101927588	Hs.617072	NR_125420	ENSG00000214803	LOC101927588	-	uncharacterized LOC101927588	ncRNA	nan	nan	nan	0.229	0.474	0.301	0.401	0.169	0.081	0.129	0.078	0.265	nan	0.041	0.062	1.999	3.670	0.676	0.806	0.622	0.663	0.629	0.222	nan	21.707	0.116	0.422	0.244	0.343	0.471	0.264	0.824	1.139	0.130	0.243	0.643	1.698	0.544	0.462	0.120	0.246	0.014	0.079	0.401	0.265	0.074	0.166	0.347	0.291
6413	chr5	115850649	115910843	+	0	NA	intron (NM_001300780, intron 1 of 19)	LTR10A|LTR|ERV1	29876	NM_001300780	57556	Hs.156967	NM_020681	ENSG00000092421	SEMA6A	HT018|SEMA|SEMA6A1|SEMAQ|VIA	semaphorin 6A	protein-coding	1.640	0.898	0.845	0.183	0.358	0.128	0.350	0.100	0.070	0.135	0.107	0.050	0.753	0.065	0.104	0.215	0.200	0.763	1.128	0.319	0.341	0.797	0.239	0.202	0.253	2.037	nan	0.202	0.229	1.153	1.304	0.120	0.174	3.336	5.622	0.342	0.738	1.094	0.551	0.316	0.060	1.219	1.831	0.350	0.050	0.196	0.133	0.046	0.337
5407	chr3	77512090	77528426	+	0	NA	intron (NM_001128929, intron 1 of 24)	Charlie20a|DNA|hAT-Charlie	373095	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding	0.932	0.488	0.859	0.075	0.386	0.147	0.102	0.145	0.060	0.192	0.137	0.107	0.294	0.046	0.081	0.201	0.274	0.220	nan	0.493	0.547	0.268	0.129	0.130	0.088	3.874	4.370	0.238	0.223	0.896	0.788	0.048	0.093	0.990	0.775	0.279	nan	0.596	0.324	0.333	0.126	0.186	0.239	0.102	0.107	0.249	0.118	0.030	0.122
7757	chr8	75195733	75216142	+	0	NA	intron (NM_020647, intron 2 of 5)	intron (NM_020647, intron 2 of 5)	27659	NM_001317830	56704	Hs.657367	NM_020647	ENSG00000104369	JPH1	CMT2K|JP-1|JP1	junctophilin 1	protein-coding	1.252	0.761	2.880	1.254	4.370	2.265	0.238	0.110	0.118	0.591	0.312	1.205	0.523	0.140	0.076	0.354	0.322	0.723	0.744	1.269	1.445	2.067	0.560	0.301	0.327	0.560	0.806	0.477	0.450	0.623	0.486	0.217	0.415	1.062	0.934	0.441	0.971	2.078	1.529	0.049	0.186	0.336	0.695	0.238	1.205	0.014	0.129	0.112	0.128
1532	chr11	76478591	76500751	+	0	NA	Intergenic	L2c|LINE|L2	-3686	NM_001258210	25987	Hs.8361	NM_015516	ENSG00000182704	TSKU	E2IG4|LRRC54|TSK	tsukushi, small leucine rich proteoglycan	protein-coding	nan	1.845	2.912	0.480	0.742	0.401	0.492	0.821	0.189	0.350	0.275	0.558	2.592	0.868	0.117	1.625	2.390	1.002	1.721	2.303	1.700	2.090	0.436	4.440	4.691	1.184	1.672	1.500	1.841	1.459	2.088	0.753	1.006	2.154	3.388	1.172	1.428	1.341	0.781	1.313	0.337	0.587	0.476	0.492	0.558	0.285	0.882	0.210	1.032
4246	chr2	20383517	20432820	+	0	NA	intron (NM_001006946, intron 2 of 5)	MIR3|SINE|MIR	16759	NM_002997	6382	Hs.224607	NM_002997	ENSG00000115884	SDC1	CD138|SDC|SYND1|syndecan	syndecan 1	protein-coding	1.347	1.002	1.401	0.873	0.557	0.225	0.369	0.283	0.116	0.341	0.169	0.408	3.966	0.597	0.103	0.659	0.749	0.722	1.074	1.087	0.949	1.676	0.469	0.797	0.821	0.494	0.808	4.941	nan	1.140	0.961	0.588	0.869	0.334	0.278	0.307	0.483	1.003	0.732	2.338	1.758	0.072	0.399	0.369	0.408	0.555	0.452	0.275	0.080
7386	chr7	95660911	95689328	+	0	NA	intron (NM_001278422, intron 13 of 15)	intron (NM_001278422, intron 13 of 15)	173949	NR_030322	693176		NR_030322	ENSG00000208025	MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA	nan	0.815	nan	0.605	0.343	0.169	0.320	0.108	0.130	0.633	0.472	0.371	1.291	0.057	0.168	0.501	0.305	0.453	0.706	0.455	0.473	3.233	1.444	0.281	0.311	0.661	1.056	0.703	0.830	0.888	0.781	0.211	0.371	1.186	1.060	0.314	nan	3.397	1.537	0.201	0.837	0.338	0.059	0.320	0.371	0.373	0.086	0.105	0.131
7036	chr6	148250821	148263964	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-336020	NM_001346505	23328	Hs.193133	NM_015278	ENSG00000111961	SASH1	SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding	nan	0.743	nan	0.121	0.134	0.109	0.146	0.273	0.154	0.071	0.063	0.037	0.210	0.067	0.098	0.433	0.335	1.735	7.916	0.277	0.358	0.912	0.396	0.257	0.207	0.111	0.249	0.591	0.423	0.683	0.278	0.132	0.262	0.087	0.076	0.308	0.499	0.216	0.388	0.025	0.052	0.029	0.018	0.146	0.037	0.045	0.148	0.060	0.272
5518	chr3	125036529	125045329	+	0	NA	intron (NM_021964, intron 3 of 8)	AluY|SINE|Alu	53269	NM_021964	7707	Hs.592591	NM_021964	ENSG00000163848	ZNF148	BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52	zinc finger protein 148	protein-coding	1.125	nan	1.107	0.189	0.392	0.200	0.189	0.901	0.293	0.231	0.314	0.287	0.272	0.024	0.093	0.401	0.375	0.398	0.826	0.650	0.850	0.616	0.322	0.401	0.361	4.971	nan	0.287	0.370	1.386	0.929	0.215	0.378	0.163	0.182	0.648	1.473	0.356	0.340	0.442	0.141	0.054	0.640	0.189	0.287	0.034	0.023	0.079	0.180
7931	chr8	129131479	129141813	+	0	NA	Intergenic	Intergenic	-25716	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA	nan	nan	nan	0.284	0.420	0.260	0.048	1.348	0.112	0.071	0.062	0.081	nan	0.137	0.077	17.671	19.403	2.496	1.969	0.473	0.443	1.813	0.557	nan	nan	0.363	0.785	1.493	1.297	0.431	0.251	0.606	1.139	0.111	0.141	0.307	0.490	0.322	0.409	0.021	0.078	0.037	0.094	0.048	0.081	0.088	0.136	0.106	0.139
6608	chr6	10132106	10155344	+	0	NA	Intergenic	L1MC1|LINE|L1	-268826	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA	0.880	nan	0.968	0.351	0.328	0.138	0.303	0.087	0.118	0.067	0.170	0.422	0.225	0.037	0.134	0.457	0.323	0.322	0.574	0.415	0.486	0.871	0.295	0.294	0.300	0.212	0.304	0.098	0.124	0.377	0.159	0.137	0.265	2.611	2.476	0.202	0.278	0.780	0.537	0.031	0.123	0.498	0.186	0.303	0.422	0.034	0.494	0.060	0.053
6214	chr5	26903136	26909602	+	0	NA	intron (NM_016279, intron 4 of 11)	intron (NM_016279, intron 4 of 11)	132320	NM_016279	1007	Hs.272212	NM_016279	ENSG00000113100	CDH9	-	cadherin 9	protein-coding	0.845	1.114	0.905	0.189	0.248	0.100	0.262	0.249	0.229	0.074	0.289	0.148	0.309	0.084	0.157	0.320	0.266	0.141	0.196	0.339	0.547	0.433	0.140	0.208	0.212	9.065	7.255	0.332	0.240	0.942	0.711	0.099	0.155	0.072	0.070	0.156	0.216	nan	0.506	0.018	0.027			0.262	0.148	0.077	0.045	0.030	
6185	chr5	14438033	14469837	+	0	NA	intron (NM_007118, intron 34 of 56)	intron (NM_007118, intron 34 of 56)	-127956	NM_019018	54491	Hs.155085	NM_019018	ENSG00000145569	FAM105A	NET20	family with sequence similarity 105 member A	protein-coding	nan	nan	nan	1.442	0.474	0.251	0.560	5.123	0.541	1.426	0.798	0.446	nan	0.120	0.109	0.442	0.451	0.351	0.604	1.023	1.018	2.132	0.360	0.216	0.151	nan	1.742	1.835	2.652	0.638	0.442	0.243	0.509	2.432	2.828	0.392	nan	4.844	2.102	0.289	0.303	0.466	0.107	0.560	0.446	0.474	1.443	0.108	0.203
4233	chr2	16251359	16263381	+	0	NA	Intergenic	Intergenic	66821	NR_126559	104797537	Hs.435748	NR_126559	ENSG00000236289	GACAT3	LINC01458|lncRNA-AC130710	gastric cancer associated transcript 3 (non-protein coding)	ncRNA	0.689	0.504	0.747	0.483	0.167	0.120	0.075	0.094	0.040	0.052	0.104	0.047	0.333	0.036	0.075	0.367	0.405	0.268	0.265	0.336	0.374	0.245	0.081	0.215	0.179	0.105	0.250	0.285	nan	0.550	0.224	12.533	17.690	0.032	0.052	0.399	nan	0.188	0.331	0.092	0.214	0.008	0.020	0.075	0.047	0.016	0.059	19.649	0.113
4532	chr2	144066125	144084620	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	188473	NM_018460	55843	Hs.171011	NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding	0.848	nan	0.844	0.085	0.238	0.110	0.138	0.154	0.121	0.103	0.107	0.159	0.348	0.059	0.054	0.295	0.177	0.167	0.288	0.185	0.270	0.159	0.079	0.207	0.216	3.800	3.603	0.283	0.325	0.426	0.181	0.124	0.180	0.041	0.030	0.371	0.565	0.251	0.312	0.048	0.024	0.015	0.078	0.138	0.159	0.087	0.027	0.037	0.054
4238	chr2	17718823	17743551	+	0	NA	intron (NM_003385, intron 1 of 3)	MIRb|SINE|MIR	9380	NM_003385	7447	Hs.444212	NM_003385	ENSG00000163032	VSNL1	HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1	visinin like 1	protein-coding	0.635	0.569	0.789	0.252	0.198	0.149	0.264	0.081	0.071	0.075	0.094	0.044	2.270	0.061	0.105	1.514	1.606	5.232	8.074	0.267	0.366	0.223	0.107	0.570	0.673	1.902	2.445	0.592	nan	1.144	1.103	2.240	2.445	0.047	0.073	0.212	nan	0.287	0.321	0.956	0.406	0.019	0.009	0.264	0.044	0.004	0.024	1.182	0.139
4346	chr2	51199403	51224296	+	0	NA	intron (NM_001330081, intron 2 of 5)	intron (NM_001330081, intron 2 of 5)	47825	NM_001330085	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding	0.996	nan	0.873	0.197	0.564	0.307	0.201	0.096	0.090	0.447	0.276	0.356	0.458	0.039	0.128	0.411	0.257	0.221	0.241	0.350	0.549	0.582	0.220	0.334	0.345	2.466	2.866	0.776	0.719	0.833	0.431	0.146	0.208	0.262	0.524	0.642	1.576	0.263	0.203	0.058	0.210	0.062	0.089	0.201	0.356	0.071	0.046	0.051	0.249
7170	chr7	14256989	14296127	+	0	NA	intron (NM_145695, intron 22 of 23)	intron (NM_145695, intron 22 of 23)	-245508	NM_001163148	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding	nan	1.038	nan	0.142	0.524	0.274	0.212	0.171	0.095	0.245	0.217	0.337	0.443	0.053	0.154	nan	0.300	6.138	5.955	0.485	0.664	0.654	0.309	0.339	0.373	0.776	1.001	0.390	0.413	0.433	0.159	0.103	0.165	0.258	0.399	0.224	0.299	0.478	0.402	0.052	0.096	0.061	0.087	0.212	0.337	0.017	0.073	0.023	0.038
8166	chr9	79290670	79320951	+	0	NA	intron (NM_001308049, intron 1 of 11)	intron (NM_001308049, intron 1 of 11)	1521	NM_001330680	158471	Hs.262857	NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2	protein-coding	nan	nan	nan	4.909	0.425	0.212	0.205	0.145	0.058	0.554	0.248	0.641	4.051	0.027	0.077	0.296	0.200	0.295	nan	1.460	nan	2.435	0.937	0.305	0.319	0.157	0.235	5.527	6.700	0.330	0.288	0.263	0.334	0.564	0.953	0.249	0.335	2.112	0.886	0.266	0.672	0.126	0.071	0.205	0.641	0.009	1.336	0.203	0.147
5022	chr20	58394378	58415685	+	0	NA	intron (NM_001199505, intron 8 of 12)	intron (NM_001199505, intron 8 of 12)	103687	NM_014258	10388	Hs.202676	NM_014258	ENSG00000196074	SYCP2	SCP-2|SCP2	synaptonemal complex protein 2	protein-coding	1.640	2.748	0.866	1.082	0.615	0.308	0.228	0.139	0.068	0.220	0.176	3.261	0.641	0.092	0.076	0.743	nan	0.104	0.219	2.369	2.552	1.957	0.551	0.402	0.428	0.595	1.123	4.580	5.154	0.697	0.567	0.483	0.544	0.089	0.098	0.114	0.178	0.871	0.831	0.648	2.983	0.013	0.045	0.228	3.261	0.332	0.134	0.103	0.070
5259	chr22	37802248	37836749	+	0	NA	intron (NM_052906, intron 1 of 2)	MIR|SINE|MIR	4007	NM_052906	114794	Hs.344170	NM_052906	ENSG00000166897	ELFN2	LRRC62|PPP1R29	extracellular leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0.883	nan	0.777	0.081	0.432	0.195	0.345	0.099	0.074	0.061	0.037	0.104	0.659	0.239	0.116	1.370	2.423	0.199	0.452	1.136	0.936	0.189	0.062	0.167	0.188	0.190	nan	0.258	0.333	nan	1.398	0.798	1.276	0.106	0.183	0.180	0.273	0.432	0.313	1.693	0.289	0.030	0.578	0.345	0.104	1.384	0.055	0.871	0.044
5398	chr3	71347623	71360206	+	0	NA	promoter-TSS (NM_001244812)	promoter-TSS (NM_001244812)	-3	NM_001244812	27086	Hs.59368	NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding	1.669	0.756	1.901	0.294	0.649	0.448	0.264	0.077	0.039	0.474	0.204	0.983	0.500	0.060	0.075	1.274	0.940	3.845	nan	0.784	0.876	0.805	0.451	1.314	1.282	0.087	0.154	0.953	1.453	11.655	10.938	0.362	0.855	0.273	0.277	0.283	nan	0.677	0.449	0.036	0.213	0.068	1.313	0.264	0.983	0.285	0.113	0.226	0.255
1925	chr12	46751483	46782513	+	0	NA	promoter-TSS (NM_001307936)	promoter-TSS (NM_001307936)	-353	NM_001307936	54407	Hs.221847	NM_018976	ENSG00000134294	SLC38A2	ATA2|PRO1068|SAT2|SNAT2	solute carrier family 38 member 2	protein-coding	2.011	nan	1.523	1.923	1.834	1.007	1.145	2.039	0.218	1.133	0.532	1.337	1.423	3.939	0.140	1.827	1.891	2.392	3.646	3.241	2.884	2.253	0.905	3.674	3.770	1.136	1.417	2.406	3.095	2.208	2.343	0.931	1.659	2.101	2.374	2.210	2.793	1.199	0.802	1.279	1.445	0.411	0.781	1.145	1.337	0.457	0.989	0.467	0.872
2574	chr14	45426498	45437497	+	0	NA	promoter-TSS (NM_017658)	promoter-TSS (NM_017658)	604	NM_015091	23116	Hs.371078	NM_015091	ENSG00000198718	FAM179B	KIAA0423	family with sequence similarity 179 member B	protein-coding	nan	1.727	nan	2.991	2.157	1.106	1.181	1.341	0.146	1.086	0.821	1.545	5.066	0.975	0.105	2.328	2.655	1.180	1.691	2.563	2.264	4.343	1.691	3.101	3.418	3.397	3.720	2.847	4.032	7.510	7.204	1.814	3.404	2.979	2.672	2.164	3.352	1.534	1.052	2.106	2.165	0.416	1.751	1.181	1.545	0.756	1.202	1.261	0.743
2916	chr15	66794341	66798603	+	0	NA	promoter-TSS (NM_001287821)	promoter-TSS (NM_001287821)	721	NM_000968	6124	Hs.186350	NM_000968	ENSG00000174444	RPL4	L4	ribosomal protein L4	protein-coding	4.808	3.690	4.719	4.370	6.305	3.051	2.963	3.474	0.187	2.698	1.341	4.191	10.683	4.886	0.075	9.006	8.252	8.502	11.605	5.438	6.591	nan	5.229	13.075	14.977	6.277	8.301	8.623	11.718	18.701	18.237	6.996	10.970	7.321	10.483	9.775	8.943	4.065	1.665	1.559	1.774	1.070	1.121	2.963	4.191	2.000	4.708	2.136	2.650
3126	chr16	34180352	34197017	+	0	NA	Intergenic	HSATII|Satellite|Satellite	216078	NR_002837	606551	Hs.646441	NR_002837		UBE2MP1	-	ubiquitin conjugating enzyme E2 M pseudogene 1	pseudo	5.676	6.286	5.224	0.443	0.805	0.422	0.607	0.571	4.074	0.423	1.184	0.259	1.582	0.210	1.309	1.754	0.747	0.433	0.658	1.325	1.954	0.730	0.559	0.948	0.806	1.532	1.904	1.461	1.480	2.482	0.630	0.744	1.543	0.496	0.946	1.040	1.696	0.469	0.766	0.083	0.219	0.253	0.152	0.607	0.259	0.076	0.122	0.298	0.275
1544	chr11	78644065	78666335	+	0	NA	intron (NM_001098816, intron 6 of 33)	MIRc|SINE|MIR	-369291	NM_024678	79731	Hs.503389	NM_024678	ENSG00000137513	NARS2	DFNB94|SLM5|asnRS	asparaginyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	nan	1.184	0.758	0.615	1.756	0.937	0.623	0.098	0.084	0.185	0.129	1.455	0.567	0.069	0.100	1.624	1.772	0.191	0.321	3.559	3.959	1.894	0.449	1.274	1.278	0.317	0.538	2.521	2.500	1.021	0.770	1.463	2.761	1.664	1.240	0.301	0.825	1.164	0.994	0.259	0.308	0.545	1.704	0.623	1.455	1.520	0.060	1.895	0.189
1616	chr11	107600222	107618705	+	0	NA	Intergenic	Intergenic	-26676	NM_003063	6588	Hs.334629	NM_003063	ENSG00000170290	SLN	-	sarcolipin	protein-coding	1.019	0.836	0.989	0.123	0.263	0.096	0.070	0.032	0.043	0.076	0.130	0.032	0.271	0.041	0.129	1.545	1.019	0.187	0.214	0.281	0.402	0.177	0.082	0.199	0.295	1.076	1.547	0.268	0.341	5.827	6.171	0.290	0.469	0.244	0.221	1.605	3.424	0.429	0.434	0.036	0.105	0.077	0.086	0.070	0.032	0.354	0.027	0.102	1.300
7749	chr8	73701453	73715169	+	0	NA	intron (NM_004770, intron 2 of 2)	intron (NM_004770, intron 2 of 2)	64031	NR_110656	101926908	Hs.680588	NR_110656	ENSG00000253726	LOC101926908	-	uncharacterized LOC101926908	ncRNA	1.814	0.967	1.940	1.750	0.491	0.233	0.233	0.115	0.153	1.008	0.478	4.329	0.922	0.079	0.075	0.388	0.343	1.608	1.217	1.551	2.047	2.937	1.384	0.798	0.782	0.472	0.751	2.189	2.745	0.389	0.224	0.408	0.708	3.677	5.289	1.007	2.895	3.969	2.030	0.113	0.461	1.168	0.134	0.233	4.329	0.057	1.922	0.221	0.677
4694	chr2	210333499	210345993	+	0	NA	intron (NM_001039538, intron 1 of 14)	intron (NM_001039538, intron 1 of 14)	50975	NM_001039538	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding	nan	2.255	nan	0.837	0.588	0.300	1.240	1.962	0.154	0.571	0.285	1.293	1.688	0.990	0.082	0.459	0.410	1.703	2.216	0.775	1.168	1.260	0.513	0.572	0.571	4.405	4.679	1.839	nan	2.092	1.260	0.172	0.300	1.688	4.014	0.490	0.845	0.844	0.407	1.598	0.120	0.497	1.477	1.240	1.293	0.155	1.016	0.086	0.387
396	chr1	89115543	89136023	+	0	NA	intron (NR_110682, intron 1 of 3)	L1MC5|LINE|L1	-24044	NM_001320709	5586	Hs.440833	NM_006256	ENSG00000065243	PKN2	PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7	protein kinase N2	protein-coding	1.162	nan	nan	0.098	0.184	0.117	0.112	0.183	0.079	0.038	0.089	0.088	0.329	0.053	0.125	0.269	0.220	0.643	0.540	0.368	0.494	0.183	0.107	0.244	0.267	0.346	0.526	0.862	0.715	0.350	0.180	0.094	0.257	0.055	0.067	1.557	4.964	0.556	0.572	0.038	0.070	0.019	0.052	0.112	0.088	0.019	0.055	0.043	1.426
482	chr1	121478358	121485653	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	221095	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo	21.765	26.704	22.786	28.388	37.913	39.603	38.069	26.941	58.454	36.444	28.422	27.251	32.461	26.069	17.878	27.051	19.055	20.855	25.956	22.351	24.622	13.427	15.664	17.832	20.099	19.472	18.673	18.639	15.149	26.337	16.496	25.146	25.523	10.661	13.674	20.970	19.483	19.374	21.575	12.546	24.045	11.469	15.407	38.069	27.251	9.826	22.399	21.440	20.170
7865	chr8	107148135	107175020	+	0	NA	Intergenic	Intergenic	-88846	NR_125796	102723356	Hs.571413	NR_125796		ZFPM2-AS1	-	ZFPM2 antisense RNA 1	ncRNA	1.069	nan	nan	0.183	0.265	0.132	0.248	0.469	0.168	0.077	0.104	0.603	0.711	0.012	0.100	0.384	0.240	0.250	0.337	0.309	0.411	nan	0.142	0.529	0.543	7.035	nan	1.084	nan	nan	0.159	0.177	0.268	0.061	0.107	0.355	nan	0.527	0.507	0.032	0.066	0.021	0.115	0.248	0.603	0.079	0.053	0.048	0.103
8237	chr9	112026833	112043845	+	0	NA	intron (NM_018424, intron 2 of 15)	intron (NM_018424, intron 2 of 15)	47905	NM_018424	54566	Hs.591901	NM_018424	ENSG00000095203	EPB41L4B	CG1|EHM2	erythrocyte membrane protein band 4.1 like 4B	protein-coding	0.982	0.892	nan	0.862	0.412	0.261	0.104	0.124	0.095	0.464	0.292	0.569	1.028	0.057	0.074	0.221	0.200	0.254	0.381	0.617	0.655	1.002	0.308	0.593	0.561	0.806	1.169	1.635	nan	5.352	5.195	0.583	0.974	0.922	1.208	0.265	0.569	nan	0.694	0.307	1.341	0.214	0.065	0.104	0.569	0.597	0.574	1.844	0.109
7429	chr7	107922519	107937860	+	0	NA	intron (NM_005010, intron 3 of 27)	intron (NM_005010, intron 3 of 27)	-49575	NM_001037132	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding	nan	0.873	1.109	0.216	0.917	0.574	0.485	0.222	0.157	0.369	0.241	1.101	0.733	0.098	0.155	0.477	0.293	1.710	1.086	0.709	0.679	2.604	0.952	0.237	0.262	0.784	1.164	0.746	0.881	0.593	0.274	0.302	0.472	2.204	4.886	0.741	nan	1.755	1.057	2.111	0.828	0.537	0.238	0.485	1.101	0.191	0.080	0.124	0.314
499	chr1	145541163	145558447	+	0	NA	intron (NM_144698, intron 1 of 13)	intron (NM_144698, intron 1 of 13)	596	NM_144698	148741	Hs.710624	NM_144698	ENSG00000198483	ANKRD35	-	ankyrin repeat domain 35	protein-coding	1.556	nan	2.363	2.753	1.151	0.640	4.733	0.694	0.158	2.504	1.354	5.077	12.129	0.138	0.101	0.680	0.935	0.961	1.255	5.931	6.668	5.935	1.906	0.517	0.602	1.138	1.675	4.247	3.787	0.549	0.331	0.810	1.013	4.597	4.414	0.412	0.799	2.881	1.335	1.755	5.227	1.894	1.408	4.733	5.077	0.104	0.567	0.344	0.095
3432	chr17	45680448	45702686	+	0	NA	intron (NM_001330257, intron 20 of 23)	AluJb|SINE|Alu	-35637	NM_002265	3837	Hs.532793	NM_002265	ENSG00000108424	KPNB1	IMB1|IPO1|IPOB|Impnb|NTF97	karyopherin subunit beta 1	protein-coding	1.062	1.178	nan	0.479	1.677	0.814	0.311	0.714	0.245	0.571	0.353	0.307	0.471	0.249	0.149	0.458	0.565	0.651	0.911	0.864	nan	3.701	0.865	0.837	0.909	0.433	0.636	0.820	nan	1.054	0.795	0.339	0.505	1.028	1.920	0.522	1.339	1.997	0.870	0.188	0.133	0.554	0.150	0.311	0.307	0.145	0.393	0.085	0.410
4556	chr2	157187145	157209168	+	0	NA	Intergenic	CpG	-8869	NM_006186	4929	Hs.563344	NM_006186	ENSG00000153234	NR4A2	HZF-3|NOT|NURR1|RNR1|TINUR	nuclear receptor subfamily 4 group A member 2	protein-coding	nan	2.582	nan	2.916	4.081	2.334	2.250	1.776	0.240	1.559	0.849	2.251	9.236	1.390	0.100	2.087	2.785	4.403	5.342	2.441	1.904	3.002	1.396	5.565	6.125	3.840	3.970	2.836	3.829	1.177	1.191	0.704	1.352	3.096	2.468	2.558	4.538	0.912	0.720	2.083	1.227	0.525	1.264	2.250	2.251	0.711	2.164	0.473	1.845
6783	chr6	44621300	44643576	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-112820	NR_134609	105375075	Hs.123393	NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA	1.087	0.879	0.957	0.068	0.281	0.108	0.752	1.354	0.105	0.084	0.133	0.096	0.407	0.098	0.115	0.477	0.445	1.730	7.940	0.329	0.416	0.162	0.077	0.368	0.378	0.165	0.288	0.531	nan	0.419	0.235	0.348	0.532	0.125	0.139	0.784	1.862	0.641	0.462	0.375	0.104	0.034	0.057	0.752	0.096	0.040	0.222	0.097	0.928
1047	chr10	15900225	15909680	+	0	NA	Intergenic	AluSq|SINE|Alu	-2420	NM_024948	80013	Hs.158870	NM_024948	ENSG00000148481	FAM188A	C10orf97|CARP|DERP5|MST126|MSTP126|my042	family with sequence similarity 188 member A	protein-coding	nan	1.922	0.645	2.708	0.608	0.187	0.230	1.058	0.103	0.764	0.259	0.913	1.893	0.239	0.075	1.221	1.204	1.341	1.592	0.943	0.722	10.306	3.407	0.425	0.428	0.965	1.190	1.377	1.140	0.706	0.663	0.470	0.759	1.353	2.142	0.371	0.976	1.627	0.882	0.099	0.245	0.233	0.126	0.230	0.913	0.031	1.312	0.198	0.240
3856	chr18	57617060	57630073	+	0	NA	Intergenic	L2|LINE|L2	56374	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	nan	1.463	0.872	0.565	0.595	0.283	1.406	0.150	0.074	0.666	0.397	0.276	1.260	0.008	0.060	0.959	1.410	1.547	0.813	1.074	1.304	8.822	2.105	2.128	2.353	0.380	0.438	3.127	3.161	0.648	0.473	0.512	0.736	0.951	1.574	0.430	1.139	nan	2.586	0.467	0.660	0.176	0.264	1.406	0.276	0.219	1.701	0.919	0.203
3228	chr17	499361	513280	+	0	NA	intron (NM_001128159, intron 11 of 21)	intron (NM_001128159, intron 11 of 21)	111776	NM_001128159	55275	Hs.461819	NM_018289	ENSG00000141252	VPS53	HCCS1|PCH2E|hVps53L|pp13624	VPS53, GARP complex subunit	protein-coding	1.531	1.151	1.362	0.165	0.296	0.150	0.220	0.119	0.046	0.163	0.065	0.108	0.247	0.071	0.116	0.240	0.297	0.310	0.442	0.403	0.391	1.461	0.342	0.342	0.430	1.156	1.871	0.189	0.286	0.644	0.584	0.153	0.281	0.077	0.099	2.907	9.866	0.320	0.310	0.098	0.398	0.052	0.068	0.220	0.108	0.147	0.081	0.050	5.377
909	chr1	229475846	229479395	+	0	NA	intron (NM_145257, intron 2 of 3)	intron (NM_145257, intron 2 of 3)	1068	NM_145257	126731	Hs.585011	NM_145257	ENSG00000154429	CCSAP	C1orf96|CSAP	centriole, cilia and spindle associated protein	protein-coding	6.193	5.080	6.310	5.508	5.575	2.794	4.572	1.604	0.315	3.299	2.118	6.473	8.810	3.422	0.138	8.308	7.806	13.519	15.558	14.160	10.171	6.448	2.223	8.239	8.135	4.560	5.452	5.221	9.748	3.039	4.020	2.283	4.265	4.563	2.833	5.184	7.285	3.155	1.606	2.973	2.234	1.148	3.617	4.572	6.473	1.456	2.513	1.709	1.424
5996	chr4	115518456	115538737	+	0	NA	intron (NM_001322114, intron 1 of 5)	intron (NM_001322114, intron 1 of 5)	8155	NM_001322114	7368	Hs.144197	NM_003360	ENSG00000174607	UGT8	CGT|UGT4	UDP glycosyltransferase 8	protein-coding	0.855	1.599	0.949	2.005	0.846	0.277	0.819	0.073	0.079	1.462	0.644	4.882	2.752	0.289	0.062	3.408	3.470	3.476	4.356	1.529	1.170	3.436	1.113	1.061	1.023	0.642	0.968	0.988	1.306	1.245	1.216	4.366	7.405	3.047	3.289	0.146	0.241	1.177	0.746	0.030	0.102	0.667	0.989	0.819	4.882	0.146	0.747	5.211	0.159
1124	chr10	63505046	63526126	+	0	NA	intron (NM_173554, intron 4 of 6)	intron (NM_173554, intron 4 of 6)	92867	NM_173554	219621	Hs.673160	NM_173554	ENSG00000183346	C10orf107	bA63A2.1	chromosome 10 open reading frame 107	protein-coding	0.731	nan	0.709	0.054	0.483	0.313	0.043	2.227	0.168	0.134	0.121	0.302	0.287	0.165	0.110	0.527	0.323	4.502	10.438	0.247	0.387	0.276	0.116	0.443	0.464	0.579	0.739	0.357	0.306	0.196	0.102	0.353	0.696	0.611	0.696	0.229	nan	0.836	0.521		0.071	0.176	0.058	0.043	0.302	0.052	0.056	0.550	0.124
2618	chr14	58424892	58456809	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-108258	NM_001206920	341880	Hs.28280	NM_001080455	ENSG00000151812	SLC35F4	C14orf36|c14_5373	solute carrier family 35 member F4	protein-coding	nan	nan	2.126	0.269	1.534	0.729	1.331	0.085	0.060	0.079	0.098	0.476	0.301	0.041	0.110	0.329	0.251	0.321	0.360	0.630	0.568	0.152	0.113	0.397	0.427	0.148	0.290	0.477	0.442	0.943	0.727	0.202	0.302	0.062	0.095	4.451	9.376	nan	0.668	1.501	0.957	0.030	0.097	1.331	0.476	0.235	0.391	0.062	3.678
2981	chr15	89651998	89678013	+	0	NA	intron (NM_152924, intron 3 of 10)	intron (NM_152924, intron 3 of 10)	33624	NM_152924	11057	Hs.122337	NM_007011	ENSG00000140526	ABHD2	HS1-2|LABH2|PHPS1-2	abhydrolase domain containing 2	protein-coding	1.149	nan	1.946	1.259	0.977	0.442	0.463	0.490	0.131	2.520	1.282	2.402	0.751	0.038	0.068	1.603	1.983	1.542	0.876	1.524	1.908	4.229	2.829	0.444	0.418	0.684	1.009	3.023	4.587	1.261	1.135	1.217	1.663	1.605	2.492	0.397	0.992	1.909	1.017	0.378	0.558	0.444	0.073	0.463	2.402	0.239	1.293	1.453	0.455
4266	chr2	25829866	25844763	+	0	NA	intron (NM_001256308, intron 3 of 17)	L1MD|LINE|L1	35777	NM_001256308	1838	Hs.307720	NM_021907	ENSG00000138101	DTNB	-	dystrobrevin beta	protein-coding	1.039	1.331	0.888	0.602	1.024	0.528	1.589	0.598	0.225	1.804	0.887	1.483	0.953	0.043	0.147	0.394	0.337	0.818	0.801	1.358	1.825	6.251	2.737	1.261	1.207	0.826	1.149	1.096	nan	0.523	0.270	0.309	0.406	1.861	1.781	0.426	0.851	3.154	1.381	0.173	0.247	0.736	0.226	1.589	1.483	0.228	0.687	0.073	0.249
8317	chr9	136495937	136533494	+	0	NA	intron (NM_000787, intron 6 of 11)	intron (NM_000787, intron 6 of 11)	7815	NR_102735	138948	Hs.223858	NR_002783	ENSG00000225756	DBH-AS1	NCRNA00118	DBH antisense RNA 1	ncRNA	nan	0.742	3.213	2.198	0.468	0.252	0.600	0.077	0.039	0.740	0.427	1.119	1.460	0.038	0.056	0.269	0.501	0.140	0.165	4.581	4.664	nan	0.497	0.092	0.093	0.067	0.151	2.771	2.713	1.297	1.146	0.257	0.216	0.442	0.330	0.258	0.456	2.356	1.156	3.654	0.860	0.059	0.034	0.600	1.119	0.187	0.360	0.050	0.036
5618	chr3	156776092	156786143	+	0	NA	Intergenic	Intergenic	-18513	NR_135546	105374177	Hs.634263	NR_135546	ENSG00000241544	LINC02029	-	long intergenic non-protein coding RNA 2029	ncRNA	nan	0.949	0.750	0.114	0.375	0.226	0.319	0.514	0.163	0.258	0.219	0.119	0.423	0.054	0.083	2.511	3.123	6.348	2.490	0.321	0.481	1.060	0.420	1.698	1.911	2.931	nan	0.281	0.346	0.724	0.368	0.534	1.183	0.187	0.146	0.377	0.383	0.788	0.732	0.056	0.080	0.076	0.093	0.319	0.119	0.461	0.136	0.535	0.196
7490	chr7	133253294	133265760	+	0	NA	intron (NM_021807, intron 9 of 17)	intron (NM_021807, intron 9 of 17)	250114	NR_120513	101928861	Hs.675747	NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA	nan	nan	nan	0.092	0.247	0.129	0.083	0.569	0.077	0.214	0.161	0.247	0.363	0.095	0.153	0.476	0.324	0.205	0.310	0.422	0.495	nan	0.098	0.276	0.295	3.897	nan	0.570	0.584	nan	0.603	0.177	0.223	0.328	0.361	0.370	0.793	0.552	nan	0.190	0.100	0.068	0.064	0.083	0.247	0.096	0.032	0.037	0.158
450	chr1	112415033	112438197	+	0	NA	intron (NM_004980, intron 2 of 7)	MIRb|SINE|MIR	-25664	NR_046619	100873995	Hs.535274	NR_046619	ENSG00000237556	KCND3-AS1	-	KCND3 antisense RNA 1	ncRNA	nan	1.694	1.157	0.699	0.579	0.367	0.691	0.042	0.084	0.347	0.148	0.062	2.045	0.042	0.090	0.288	0.341	0.111	0.170	1.908	nan	1.454	0.657	0.154	0.128	1.377	2.245	1.064	1.582	0.455	0.385	0.401	0.577	0.087	0.055	0.529	1.284	2.936	1.604	5.129	1.680	0.028	0.048	0.691	0.062	0.237	0.408	0.211	0.463
7496	chr7	135335747	135349563	+	0	NA	Intergenic	Intergenic	-4566	NM_001130929	647087	Hs.200022	NM_001130929	ENSG00000243317	C7orf73	PL-5283	chromosome 7 open reading frame 73	protein-coding	nan	nan	nan	1.194	1.215	0.506	1.331	0.897	0.279	1.221	0.633	2.217	1.461	1.082	0.111	1.926	1.759	1.458	2.121	1.662	1.493	9.107	3.734	1.621	1.700	1.284	nan	2.100	2.317	nan	1.691	1.094	1.827	1.464	1.480	1.279	2.205	3.239	nan	0.327	1.069	0.206	0.404	1.331	2.217	0.274	1.033	0.398	0.505
7196	chr7	21063750	21070273	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	191961	NR_126381	104355138	Hs.650722	NR_126381	ENSG00000232790	LINC01162	-	long intergenic non-protein coding RNA 1162	ncRNA	1.121	1.436	0.876	0.162	8.814	4.692	0.645	0.117	0.122	1.366	0.803	0.818	3.920	0.166	0.112	1.476	1.142	0.201	nan	0.956	1.077	1.581	0.772	0.440	0.494	0.291	0.501	1.010	0.785	0.336	0.180	0.256	0.631	2.514	1.877	0.200	nan	2.297	1.157	0.060	0.642	0.438	2.687	0.645	0.818	0.030	0.466	0.108	0.020
4951	chr20	40268205	40287329	+	0	NA	Intergenic	Intergenic	-30634	NM_032221	84181	Hs.740645	NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding	nan	nan	1.973	5.568	4.144	2.325	0.948	0.122	0.193	1.806	0.862	6.181	8.531	0.045	0.108	4.721	5.127	0.961	0.717	5.167	5.768	nan	4.449	4.931	5.186	0.767	1.127	10.557	12.364	nan	1.617	2.678	4.932	0.982	0.642	0.759	1.851	2.134	1.403	1.791	2.602	0.252	0.401	0.948	6.181	0.269	2.533	3.805	0.535
1405	chr11	45906524	45923146	+	0	NA	intron (NM_005456, intron 1 of 11)	intron (NM_005456, intron 1 of 11)	7788	NM_005456	9479	Hs.234249	NM_005456	ENSG00000121653	MAPK8IP1	IB1|JIP-1|JIP1|PRKM8IP	mitogen-activated protein kinase 8 interacting protein 1	protein-coding	nan	2.599	0.891	1.570	1.698	0.801	3.274	0.139	0.005	1.594	0.772	2.835	2.921	0.668	0.083	2.158	3.601	0.593	0.839	4.760	4.938	3.458	1.713	0.436	0.432	2.100	2.755	1.160	1.767	1.675	1.990	1.043	1.713	2.092	1.427	1.301	nan	2.023	1.131	1.172	3.513	0.541	0.688	3.274	2.835	0.819	1.930	0.464	0.273
4442	chr2	98352469	98383129	+	0	NA	Intergenic	Intergenic	16930	NM_207519	7535	Hs.234569	NM_001079	ENSG00000115085	ZAP70	ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70	zeta chain of T cell receptor associated protein kinase 70	protein-coding	0.947	0.575	1.833	0.174	0.377	0.173	2.269	0.163	0.084	0.143	0.120	0.660	2.239	0.043	0.085	0.474	0.342	0.339	0.472	1.909	2.209	1.393	0.428	0.357	0.300	0.347	0.709	0.491	0.838	0.600	0.563	0.272	0.315	0.149	0.214	0.189	0.306	0.593	0.417	2.742	3.782	0.047	0.564	2.269	0.660	0.290	0.074	0.061	0.041
7328	chr7	74028863	74045775	+	0	NA	Intergenic	AluSz6|SINE|Alu	-34672	NM_032999	2969	Hs.647041	NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding	nan	1.232	1.301	0.954	0.504	0.256	0.828	0.705	0.609	0.156	0.150	0.345	2.481	0.278	0.145	0.473	0.538	0.434	nan	1.202	1.158	1.339	0.366	0.227	0.230	0.442	nan	2.192	nan	2.785	3.097	0.325	0.357	1.016	1.134	2.729	6.042	1.074	0.763	1.784	2.364	0.266	3.761	0.828	0.345	1.087	0.090	0.087	1.552
5161	chr21	45652844	45671570	+	0	NA	Intergenic	CpG-17318	-1320	NM_015259	23308	Hs.14155	NM_015259	ENSG00000160223	ICOSLG	B7-H2|B7H2|B7RP-1|B7RP1|CD275|GL50|ICOS-L|ICOSL|LICOS	inducible T-cell costimulator ligand	protein-coding	nan	0.889	2.892	0.267	2.982	1.604	0.226	0.131	0.026	0.083	0.062	2.061	3.658	0.121	0.050	0.722	1.272	0.394	0.746	1.113	1.102	nan	0.495	0.730	0.625	0.106	nan	2.642	4.290	0.758	0.620	1.163	1.972	0.156	0.266	0.476	0.780	0.740	0.508	5.933	2.092	0.046	0.047	0.226	2.061	0.419	0.082	1.667	0.229
5822	chr4	3239655	3260338	+	0	NA	promoter-TSS (NM_001042690)	promoter-TSS (NM_001042690)	-771	NM_001042690	345222	Hs.442291	NM_001012982	ENSG00000188981	MSANTD1	C4orf44	Myb/SANT DNA binding domain containing 1	protein-coding	0.798	0.570	nan	1.556	0.248	0.115	0.312	0.065	0.067	0.395	0.215	1.110	0.379	0.058	0.054	0.982	1.832	0.313	0.462	2.184	1.953	nan	0.875	1.439	1.498	0.169	0.313	2.073	2.762	0.551	0.570	0.770	0.897	0.271	0.391	0.229	0.201	nan	0.865	2.002	3.647	0.078	0.248	0.312	1.110	0.023	0.089	0.677	0.113
1729	chr11	128631779	128661172	+	0	NA	intron (NM_001167681, intron 5 of 9)	AluSx1|SINE|Alu	65954	NM_000220	3758	Hs.527830	NM_000220	ENSG00000151704	KCNJ1	KIR1.1|ROMK|ROMK1	potassium voltage-gated channel subfamily J member 1	protein-coding	0.574	0.834	0.713	1.156	5.625	2.849	0.517	0.107	0.054	0.973	0.597	2.882	1.025	0.081	0.082	1.896	2.813	0.753	0.655	4.313	4.048	3.391	1.056	0.138	0.150	0.174	0.269	3.556	2.543	0.416	0.348	0.699	0.986	0.548	0.359	0.094	nan	2.530	1.395	0.659	0.216	0.071	0.125	0.517	2.882	0.020	0.076	0.202	0.033
6674	chr6	26018576	26061015	+	0	NA	Intergenic	LTR51|LTR|ERV1	4090	NM_021062	3018	Hs.553494	NM_021062	ENSG00000276410	HIST1H2BB	H2B.1|H2B/f|H2BFF	histone cluster 1 H2B family member b	protein-coding	4.083	2.182	nan	3.492	4.081	2.146	1.759	2.045	0.367	1.008	0.574	3.652	nan	6.294	0.237	4.920	5.457	4.900	nan	4.752	3.441	nan	5.893	5.784	5.602	2.246	2.700	4.471	5.298	3.560	4.029	0.867	1.559	4.517	3.700	4.228	6.425	2.420	1.476	1.227	3.892	0.601	1.842	1.759	3.652	0.755	1.723	0.767	1.309
3202	chr16	85278587	85328940	+	0	NA	Intergenic	Intergenic	-12801	NR_038859	197196	Hs.679002	NM_153238	ENSG00000179219	LINC00311	NCRNA00311|TMEM148	long intergenic non-protein coding RNA 311	ncRNA	nan	0.670	2.111	0.383	0.370	0.239	2.013	0.150	0.080	0.082	0.097	0.506	0.671	0.071	0.092	0.929	1.643	0.237	0.341	0.817	0.839	0.880	0.306	0.278	0.333	0.951	1.365	0.718	1.007	3.110	3.241	0.293	0.310	0.319	0.346	0.702	1.258	0.897	0.562	0.462	0.166	0.066	0.076	2.013	0.506	1.406	0.129	0.051	0.399
6550	chr5	171230059	171240404	+	0	NA	Intergenic	L1ME3C|LINE|L1	22355	NM_001289970	644994	Hs.591740	NM_001289970		SMIM23	C5orf50	small integral membrane protein 23	protein-coding	0.511	0.828	0.600	0.197	0.330	0.232	0.117	0.115	0.108	0.090	0.078	6.899	0.517	0.093	0.127	0.196	0.130	0.160	nan	1.150	1.493	0.266	0.063	0.201	0.245	0.117	nan	1.508	1.590	0.339	0.200	0.100	0.154	0.143	0.136	0.078	0.120	0.460	0.425	0.064	0.059	0.014	0.016	0.117	6.899	0.018	2.545	0.038	0.012
356	chr1	67595589	67604898	+	0	NA	intron (NR_075077, intron 1 of 9)	intron (NR_075077, intron 1 of 9)	411	NM_001276352	400757	Hs.666621	NM_001013674	ENSG00000203963	C1orf141	-	chromosome 1 open reading frame 141	protein-coding	0.979	0.703	nan	0.104	0.235	0.124	0.041	0.089	0.155	0.133	0.098	0.167	0.338	0.035	0.082	1.942	2.272	0.311	0.309	0.271	0.442	0.150	0.106	0.366	0.389	nan	nan	0.623	nan	0.341	0.158	7.105	5.660	0.029	0.045	0.192	0.507	0.517	0.554	0.024	0.227	0.010	0.067	0.041	0.167	0.011	0.066	4.720	0.190
2396	chr13	99683283	99742009	+	0	NA	intron (NM_001130049, intron 1 of 32)	L1MB7|LINE|L1	26014	NM_001130049	23348	Hs.596105	NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding	1.198	1.801	1.750	0.432	0.764	0.399	0.678	0.255	0.127	0.157	0.131	0.688	1.303	0.154	0.077	0.972	1.014	0.618	0.856	1.011	0.997	1.143	0.457	0.402	0.422	0.436	nan	0.849	1.032	0.841	0.702	0.486	0.844	0.285	0.262	1.677	nan	0.267	0.243	1.127	1.084	0.065	1.168	0.678	0.688	0.140	0.280	0.243	1.088
5377	chr3	53287803	53310740	+	0	NA	Intergenic	Intergenic	-9141	NR_047580	7086	Hs.89643	NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding	1.357	2.143	nan	1.254	0.574	0.203	0.441	0.535	0.252	0.282	0.220	0.398	1.300	0.418	0.112	0.818	0.862	1.329	2.485	1.012	0.739	4.242	0.977	2.661	2.708	0.457	0.805	2.102	3.002	nan	1.526	0.710	0.810	1.038	1.882	1.166	1.405	0.919	0.611	1.072	0.816	0.111	0.622	0.441	0.398	0.344	1.658	0.324	0.483
4325	chr2	47413299	47455866	+	0	NA	intron (NR_110208, intron 3 of 4)	FRAM|SINE|Alu	-30507	NM_001305625	805	Hs.468442	NM_001743	ENSG00000143933	CALM2	CAMII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding	1.536	nan	1.256	0.298	0.720	0.443	0.404	0.237	0.099	0.377	0.259	0.353	1.109	0.077	0.099	1.481	2.104	0.350	0.655	nan	0.556	1.296	0.355	0.555	0.643	0.930	1.307	1.133	1.235	1.782	1.560	0.507	0.920	0.260	0.356	1.548	nan	nan	0.850	1.553	1.107	0.070	0.517	0.404	0.353	0.289	0.100	0.761	1.470
807	chr1	204461922	204494282	+	0	NA	Intergenic	MIR|SINE|MIR	-7405	NM_001278518	4194	Hs.497492	NM_002393	ENSG00000198625	MDM4	HDMX|MDMX|MRP1	MDM4, p53 regulator	protein-coding	2.594	1.978	2.249	1.872	2.245	1.088	1.384	1.080	0.378	0.960	0.717	1.679	3.254	1.682	0.143	3.362	3.761	3.996	4.084	3.723	3.798	3.526	1.250	nan	nan	1.850	2.404	3.591	4.198	2.211	1.920	1.453	2.239	1.549	1.692	1.968	3.677	1.623	0.881	1.444	4.893	0.189	0.853	1.384	1.679	0.439	0.744	1.295	0.897
3897	chr18	73915375	73933213	+	0	NA	Intergenic	Intergenic	89341	NR_040034	339298	Hs.151215	NR_040034	ENSG00000263547	LOC339298	-	uncharacterized LOC339298	ncRNA	nan	nan	0.689	3.478	5.516	2.750	1.405	0.063	0.063	3.155	2.026	6.275	1.532	0.030	0.086	0.572	0.767	0.686	1.028	4.458	nan	15.410	6.388	0.308	0.361	0.083	0.147	5.629	nan	0.501	0.314	0.173	0.238	4.316	4.130	0.183	0.311	3.002	1.473	0.022	0.535	0.656	0.476	1.405	6.275	0.011	0.103	0.033	0.069
2040	chr12	79800508	79819592	+	0	NA	intron (NM_001291901, intron 8 of 9)	intron (NM_001291901, intron 8 of 9)	-2987	NR_031700	100302136		NR_031700	ENSG00000221788	MIR1252	MIRN1252|hsa-mir-1252	microRNA 1252	ncRNA	nan	0.951	0.782	0.171	0.722	0.328	0.235	1.059	0.159	0.263	0.182	0.176	0.359	0.115	0.075	0.355	0.256	1.000	4.971	0.583	0.717	0.869	0.393	0.372	0.342	1.041	1.405	nan	1.034	0.442	0.250	0.175	0.283	0.138	0.275	0.411	0.636	nan	0.809	0.150	0.094	0.020	0.054	0.235	0.176	0.037	0.070	0.042	0.145
2678	chr14	75695879	75710155	+	0	NA	Intergenic	AluSc5|SINE|Alu	-42464	NM_005252	2353	Hs.25647	NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding	2.050	1.583	1.262	0.336	1.075	0.496	0.709	0.224	0.289	0.276	0.211	0.628	1.348	0.160	0.143	0.384	0.496	0.343	0.572	1.232	1.099	0.510	0.261	0.564	0.599	0.530	0.944	1.391	nan	1.215	1.032	0.316	0.321	0.518	0.454	0.567	1.141	2.670	nan	0.125	1.225	0.066	0.056	0.709	0.628	0.401	0.185	0.076	0.565
5979	chr4	102871420	102907711	+	0	NA	intron (NM_001127507, intron 6 of 15)	intron (NM_001127507, intron 6 of 15)	154582	NM_001083907	55024	Hs.480400	NM_017935	ENSG00000153064	BANK1	BANK	B-cell scaffold protein with ankyrin repeats 1	protein-coding	0.518	nan	nan	0.121	0.272	0.143	0.180	0.162	0.049	0.074	0.079	0.105	0.387	0.033	0.086	0.402	0.235	0.245	nan	0.235	0.285	0.230	0.074	0.132	0.115	3.604	nan	0.375	0.435	0.338	0.177	0.085	0.176	0.157	0.261	0.007	nan	0.360	0.333	0.005	0.139	0.026	0.121	0.180	0.105	0.094	0.047	0.054	
5560	chr3	134944268	134959528	+	0	NA	intron (NM_004441, intron 12 of 15)	THE1C-int|LTR|ERVL-MaLR	437799	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding	0.934	nan	nan	0.305	4.390	2.174	0.722	0.116	0.063	0.215	0.178	0.232	1.334	0.021	0.067	0.633	0.468	0.642	0.815	1.053	1.075	5.974	1.782	0.279	0.278	0.243	0.383	1.532	1.051	nan	0.265	0.969	1.275	0.275	0.342	0.132	0.272	0.224	0.287	1.654	0.472	0.118	0.182	0.722	0.232	0.256	0.053	0.524	0.058
4379	chr2	60748293	60785299	+	0	NA	intron (NM_138559, intron 2 of 4)	AT_rich|Low_complexity|Low_complexity	13837	NM_018014	53335	Hs.370549	NM_018014	ENSG00000119866	BCL11A	BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856	B-cell CLL/lymphoma 11A	protein-coding	2.556	0.620	nan	1.090	1.178	0.558	1.564	0.075	0.037	0.964	0.615	0.698	2.784	0.138	0.110	1.037	1.126	4.756	5.213	4.915	3.977	nan	0.128	1.795	1.819	2.473	3.165	1.690	2.328	3.710	4.352	0.795	1.718	1.449	1.088	2.308	3.153	1.105	0.906	0.900	4.180	0.288	2.726	1.564	0.698	0.957	0.937	0.858	1.397
8350	chr9_gl000199_random	33099	35211	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA									11.719	13.792	10.578	3.979	10.033	5.980	8.359	5.297	16.399	4.735	nan	3.295	10.667	2.033	5.604	8.368	5.868	5.485	6.663	6.589	7.625	4.135	4.217	5.630	5.787	5.062	6.248	nan	4.575	9.286	3.971	4.373	nan	2.792	3.819	4.841	nan	5.368	6.531	1.595	2.968	2.217	1.857	8.359	3.295	1.329	1.614	1.969	1.859
1050	chr10	16683413	16700320	+	0	NA	intron (NM_152724, intron 7 of 7)	intron (NM_152724, intron 7 of 7)	-127862	NM_001010908	389941	Hs.676792	NM_001010908	ENSG00000165985	C1QL3	C1QTNF13|C1ql|CTRP13|K100	complement C1q like 3	protein-coding	nan	0.763	1.233	0.319	0.581	0.293	0.061	0.246	0.191	0.076	0.096	0.596	0.247	0.019	0.106	1.442	1.244	4.599	5.955	0.357	0.380	0.769	0.395	0.113	0.117	0.626	0.672	0.391	0.385	0.153	0.089	0.282	0.416	0.335	0.412	0.750	2.072	0.387	0.374	0.010	0.074	0.090	0.132	0.061	0.596		0.060	0.158	0.248
7290	chr7	55566838	55584389	+	0	NA	intron (NM_030796, intron 2 of 4)	ALINE|LINE|RTE	18960	NM_001321251	81552	Hs.488307	NM_030796	ENSG00000154978	VOPP1	ECOP|GASP	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	nan	0.897	1.055	0.939	0.907	0.412	0.488	0.210	0.083	1.128	0.463	1.718	0.538	0.113	0.169	0.558	0.578	0.347	0.524	2.404	2.826	4.986	1.413	0.167	0.203	0.449	0.777	0.692	0.958	0.353	0.206	0.198	0.404	0.735	0.597	0.274	0.638	3.313	1.510	0.070	0.154	0.119	0.346	0.488	1.718	0.039	0.081	0.045	0.240
6928	chr6	121252708	121257591	+	0	NA	Intergenic	L1PB4|LINE|L1	400497	NR_104452	221322	Hs.121396	NM_152730	ENSG00000146350	TBC1D32	BROMI|C6orf170|C6orf171|bA301B7.2|bA57L9.1|dJ310J6.1	TBC1 domain family member 32	protein-coding	1.021	0.728	0.645	0.194	0.263	0.131	0.077	0.016	0.033	0.032	0.033		0.325	0.045	0.073	3.463	2.140	8.714	1.097	0.179	0.247	0.205	0.188	2.976	3.455	0.161	0.245	0.498	0.391	0.511	0.341	0.600	1.193	0.077	0.052	0.418	0.619	0.163	0.344		0.190	0.020	0.032	0.077		0.080	0.144	0.548	0.328
4054	chr19	39351234	39383285	+	0	NA	intron (NM_001195833, intron 2 of 11)	intron (NM_001195833, intron 2 of 11)	1660	NM_198445	126432	Hs.446933	NM_198445	ENSG00000187994	RINL	-	Ras and Rab interactor like	protein-coding	1.543	2.093	2.874	2.730	1.919	0.986	0.336	0.218	0.232	1.813	0.887	1.378	1.710	0.200	0.138	0.681	1.091	0.290	0.480	1.363	1.507	5.836	2.254	0.766	0.749	0.461	0.796	3.173	2.510	nan	0.653	0.621	0.750	1.247	1.060	0.556	1.184	2.662	1.175	0.529	0.346	0.407	0.280	0.336	1.378	0.261	0.993	0.169	0.220
6162	chr5	8473650	8506523	+	0	NA	Intergenic	LTR8|LTR|ERV1	29048	NR_039663	100616142		NR_039663	ENSG00000247516	MIR4458	mir-4458	microRNA 4458	ncRNA	0.568	0.884	1.875	0.234	0.257	0.187	0.100	0.198	0.150	1.322	0.806	0.095	0.497	0.036	0.135	0.385	0.271	0.188	nan	0.584	0.603	0.185	0.078	0.061	0.073	0.277	0.484	nan	0.663	nan	0.322	0.130	0.176	0.400	0.417	0.192	0.256	3.440	nan	0.150	0.149	0.053	0.068	0.100	0.095	0.063	0.210	0.039	0.030
7587	chr8	8723184	8752134	+	0	NA	intron (NM_004225, intron 1 of 2)	intron (NM_004225, intron 1 of 2)	13472	NM_004225	9258	Hs.379414	NM_004225	ENSG00000147324	MFHAS1	LRRC65|MASL1	malignant fibrous histiocytoma amplified sequence 1	protein-coding	1.174	1.383	1.523	0.792	1.730	0.942	1.073	0.585	0.133	0.997	0.652	2.359	0.759	0.510	0.116	2.495	3.296	3.256	3.543	4.225	3.433	3.282	1.064	1.043	1.051	0.537	0.676	1.538	2.392	nan	1.304	1.384	2.748	1.557	2.182	0.616	0.853	1.841	1.146	1.772	2.060	0.319	0.627	1.073	2.359	0.158	1.269	1.494	0.235
1031	chr10	13388141	13394443	+	0	NA	promoter-TSS (NM_012247)	promoter-TSS (NM_012247)	-994	NM_012247	22929	Hs.124027	NM_012247	ENSG00000086475	SEPHS1	SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	nan	3.524	5.315	5.442	4.465	2.965	6.664	4.852	0.584	2.072	0.901	6.074	5.720	4.330	0.117	7.600	6.796	6.906	9.683	7.326	5.807	11.709	4.249	7.809	7.410	3.884	5.064	9.142	13.387	4.012	5.245	2.089	4.821	2.813	2.268	5.218	3.590	1.822	1.162	2.756	2.778	0.471	2.869	6.664	6.074	0.988	2.636	1.425	2.146
5623	chr3	158478390	158495641	+	0	NA	Intergenic	Intergenic	-32700	NR_110328	64747	Hs.58663	NM_022736	ENSG00000118855	MFSD1	SMAP4	major facilitator superfamily domain containing 1	protein-coding	nan	0.879	0.809	0.134	0.375	0.093	0.142	0.230	0.158	0.211	0.178	0.132	0.161	0.069	0.087	0.405	0.541	0.894	5.767	0.397	0.548	0.514	0.254	0.322	0.280	0.504	nan	0.687	0.618	0.595	0.343	0.272	0.447	0.032	0.047	0.326	0.510	0.578	0.511	0.061	0.070	0.010	0.105	0.142	0.132	0.050	0.035	0.109	0.106
2942	chr15	71621182	71659767	+	0	NA	intron (NM_024817, intron 5 of 16)	intron (NM_024817, intron 5 of 16)	-159076	NR_120350	101929196	Hs.680472	NR_120348		THSD4-AS1	-	THSD4 antisense RNA 1	ncRNA	0.633	0.824	1.459	0.106	0.362	0.203	0.368	0.353	0.100	0.113	0.087	0.368	0.482	0.053	0.083	0.302	0.212	2.254	5.824	0.317	0.361	1.359	0.436	0.160	0.163	0.151	0.223	0.398	0.403	0.566	0.358	0.654	0.863	0.097	0.112	0.335	0.772	0.325	0.317	0.017	0.194	0.007	0.043	0.368	0.368	0.027	0.026	0.638	0.143
454	chr1	113495508	113503195	+	0	NA	promoter-TSS (NM_003051)	promoter-TSS (NM_003051)	314	NR_103743	100506392	Hs.418285	NR_103743	ENSG00000226419	SLC16A1-AS1	-	SLC16A1 antisense RNA 1	ncRNA	nan	1.750	2.223	1.405	2.320	1.039	2.606	2.004	0.357	1.307	0.902	0.653	4.605	3.543	0.140	2.058	2.422	1.563	2.400	3.227	nan	4.498	1.247	6.932	7.280	5.150	6.403	2.899	4.898	6.602	8.097	2.141	4.882	2.049	1.115	5.136	8.302	2.283	1.650	1.168	1.465	0.368	2.624	2.606	0.653	1.366	1.163	1.827	3.405
4845	chr20	10307139	10320070	+	0	NA	Intergenic	Intergenic	98969	NM_018848	8195	Hs.472119	NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	McKusick-Kaufman syndrome	protein-coding	1.225	nan	1.886	0.260	0.439	0.361	0.307	3.400	1.199	0.074	0.153	0.897	0.984	0.076	0.088	0.810	1.029	0.123	0.236	1.524	1.326	0.546	0.244	0.240	0.289	3.652	4.570	0.609	0.681	1.365	1.048	0.519	0.890	0.508	0.951	0.143	0.332	0.805	0.541	0.579	0.871	0.036	0.657	0.307	0.897	0.269	0.715	1.027	0.100
8242	chr9	114652340	114664509	+	0	NA	promoter-TSS (NM_003358)	promoter-TSS (NM_003358)	-622	NM_003358	7357	Hs.304249	NM_003358	ENSG00000148154	UGCG	GCS|GLCT1	UDP-glucose ceramide glucosyltransferase	protein-coding	1.409	1.746	nan	2.853	1.596	0.697	0.526	0.939	0.188	0.880	0.436	1.357	3.475	1.864	0.138	1.305	1.679	1.976	2.685	2.407	2.320	1.551	0.402	2.374	2.520	0.767	1.100	8.731	8.261	2.754	3.207	0.927	2.086	1.327	0.932	1.459	2.165	nan	0.731	1.031	0.599	0.328	0.555	0.526	1.357	0.295	1.152	0.938	0.649
634	chr1	164526305	164539296	+	0	NA	intron (NM_001204963, intron 2 of 8)	intron (NM_001204963, intron 2 of 8)	4203	NM_002585	5087	Hs.557097	NM_002585	ENSG00000185630	PBX1	-	PBX homeobox 1	protein-coding	2.145	nan	2.744	3.319	2.751	1.204	2.284	1.544	0.133	1.442	1.182	1.679	7.820	0.176	0.125	1.283	2.336	2.368	3.941	5.781	nan	2.441	1.057	0.917	0.846	4.820	5.638	2.257	nan	1.910	1.709	1.091	2.206	2.580	1.991	2.687	3.851	1.826	0.877	1.092	3.606	0.602	1.075	2.284	1.679	0.060	0.829	0.953	1.724
5455	chr3	108783633	108793283	+	0	NA	intron (NM_014429, intron 9 of 27)	intron (NM_014429, intron 9 of 27)	-31845	NR_144461	100506506	Hs.278908	NR_144461		MORC1-AS1	-	MORC1 antisense RNA 1	ncRNA	nan	nan	0.644	0.092	0.383	0.132	0.131	0.106	0.133	0.083	0.092	0.297	0.194	0.022	0.127	3.872	4.013	7.717	2.021	0.311	0.334	0.266	0.105	0.494	0.450	0.176	0.204	0.210	0.229	1.452	0.613	1.029	1.543	0.065	0.037	0.265	0.348	0.515	0.524	0.023	0.083	0.020	0.017	0.131	0.297	0.010	0.021	0.697	0.038
6700	chr6	30726390	30740060	+	0	NA	Intergenic	MER11C|LTR|ERVK	-1377	NR_138037	105375013	Hs.348584	NR_138037	ENSG00000228022	HCG20	NCRNA00149	HLA complex group 20 (non-protein coding)	ncRNA	nan	1.058	nan	0.149	0.241	0.100	1.569	1.690	0.243	0.115	0.109	0.243	0.467	0.096	0.121	0.420	0.444	4.994	12.772	nan	0.354	1.545	0.446	0.251	0.330	0.260	0.625	0.257	0.320	0.483	0.225	0.156	0.237	0.135	0.177	0.348	0.766	0.405	0.599	0.041	0.091	0.028	0.064	1.569	0.243	0.036	0.762	0.037	0.396
2551	chr14	35800287	35817303	+	0	NA	Intergenic	Intergenic	47272	NM_002791	5687	Hs.446260	NM_002791	ENSG00000100902	PSMA6	IOTA|PROS27|p27K	proteasome subunit alpha 6	protein-coding	2.943	2.707	1.680	1.113	0.593	0.190	0.344	1.963	0.777	0.300	0.184	0.595	4.803	0.186	0.097	0.440	0.637	2.404	4.550	0.690	0.673	0.747	0.295	2.203	2.441	1.992	2.339	3.866	4.299	1.797	1.797	0.497	0.601	0.444	0.398	0.503	1.138	1.165	0.815	3.276	1.075	0.097	0.194	0.344	0.595	0.337	2.188	0.099	0.300
3324	chr17	20843218	20872616	+	0	NA	intron (NR_123730, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	16084	NR_123730	339260	Hs.661076	NR_123730	ENSG00000233098	LOC339260	-	uncharacterized LOC339260	ncRNA	nan	nan	nan	0.322	1.076	0.505	0.127	0.129	0.088	0.505	0.223	0.928	0.433	0.077	0.115	0.433	0.365	0.284	0.397	0.372	0.363	3.012	1.160	0.148	0.161	0.399	0.585	4.745	3.155	0.735	0.340	0.119	0.189	0.905	0.953	0.441	nan	0.653	0.466	0.019	0.642	0.175	0.019	0.127	0.928	0.060	0.450	0.024	0.227
3741	chr18	36912114	36932171	+	0	NA	intron (NR_024391, intron 3 of 3)	intron (NR_024391, intron 3 of 3)	279997	NR_030628	100126323		NR_030628	ENSG00000283615	MIR924	MIRN924|hsa-mir-924	microRNA 924	ncRNA	nan	1.019	0.747	1.617	0.376	0.156	0.772	0.052	0.024	0.087	0.132	0.393	0.368	0.050	0.086	0.313	0.147	0.154	0.327	0.601	0.636	5.550	2.066	0.196	0.156	0.318	0.496	nan	1.058	0.353	0.177	0.115	0.132	0.580	0.995	0.183	0.245	1.609	1.053	0.081	0.060	0.171	0.103	0.772	0.393	0.015	0.320	0.007	0.031
5577	chr3	140575709	140583691	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-80962	NM_018155	55186	Hs.144130	NM_018155	ENSG00000114120	SLC25A36	PNC2	solute carrier family 25 member 36	protein-coding	1.028	nan	nan	0.277	0.582	0.261	0.358	0.132	0.040	0.668	0.269	0.465	0.253		0.075	0.300	0.148	0.494	0.478	0.721	0.858	10.582	2.840	0.278	0.320	0.567	nan	1.117	nan	nan	0.553	0.190	0.350	0.365	0.289	0.384	0.642	1.923	1.096	0.109	0.110	0.023	0.961	0.358	0.465	0.172	0.307	0.050	0.015
4813	chr20	3174539	3207561	+	0	NA	intron (NM_001267623, intron 1 of 5)	intron (NM_001267623, intron 1 of 5)	1044	NM_181493	3704	Hs.415299	NM_033453	ENSG00000125877	ITPA	C20orf37|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3	inosine triphosphatase	protein-coding	1.543	3.116	1.409	1.394	1.003	0.587	0.982	0.462	0.148	1.193	0.560	2.622	3.916	0.659	0.110	2.507	2.764	1.336	1.868	3.426	3.261	4.585	1.227	2.484	2.731	1.520	2.100	5.147	5.314	1.886	1.784	1.152	1.715	1.654	1.847	1.005	1.773	1.680	0.685	1.301	1.610	0.373	0.529	0.982	2.622	0.590	1.432	0.402	0.485
6657	chr6	21141803	21147122	+	0	NA	intron (NM_017774, intron 13 of 15)	MIRc|SINE|MIR	367661	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA	1.179	0.972	nan	0.263	1.019	0.482	0.529	0.171	0.052	0.120	0.216	0.813	nan	0.102	0.063	0.709	0.918	8.260	8.836	0.663	0.796	nan	0.295	1.061	1.159	1.106	1.514	0.477	0.467	0.708	0.382	0.298	0.636	0.299	0.297	0.349	1.015	0.852	0.637	0.433	0.181	0.036	0.118	0.529	0.813	0.076	0.058	0.055	0.277
325	chr1	59323210	59370532	+	0	NA	intron (NR_108106, intron 1 of 1)	intron (NR_108106, intron 1 of 1)	96048	NR_034015	100131060	Hs.680604	NR_034014	ENSG00000234807	LINC01135	-	long intergenic non-protein coding RNA 1135	ncRNA	1.574	1.050	1.631	1.827	1.411	0.795	0.495	0.488	0.168	1.228	0.590	3.288	1.783	0.089	0.107	0.939	1.043	0.582	0.585	3.536	3.604	5.073	1.324	0.733	0.775	1.672	2.658	4.443	4.002	0.586	0.331	1.210	1.476	0.633	0.799	0.334	nan	1.739	1.027	0.611	0.461	0.240	1.025	0.495	3.288	0.202	1.418	0.721	0.123
7263	chr7	41093375	41106941	+	0	NA	Intergenic	Intergenic	-41044	NR_110832	101928773	Hs.382363	NR_110832	ENSG00000224017	LINC01449	-	long intergenic non-protein coding RNA 1449	ncRNA	1.301	2.367	nan	0.089	0.192	0.112	0.023	0.140	0.177	0.058	0.176	0.186	0.209	0.079	0.170	0.465	0.237	0.285	0.868	0.232	0.234	0.119	0.084	0.365	0.457	0.158	0.344	0.228	0.536	1.115	1.423	0.112	0.185	5.391	5.208	0.341	0.635	0.352	0.434	0.008	0.039	1.337	0.216	0.023	0.186	0.451	0.427	0.041	0.373
5198	chr22	23411064	23424209	+	0	NA	intron (NM_002073, intron 1 of 2)	intron (NM_002073, intron 1 of 2)	4967	NM_002073	2781	Hs.584760	NM_002073	ENSG00000128266	GNAZ	-	G protein subunit alpha z	protein-coding	1.274	nan	1.364	0.697	0.755	0.452	1.120	0.086	0.061	0.455	0.088	0.901	2.182	0.239	0.066	1.022	1.209	0.690	0.901	1.583	1.552	1.481	0.542	0.777	0.893	1.139	1.806	0.873	1.554	1.069	1.056	0.454	0.880	1.352	1.342	0.640	0.832	3.489	1.826	0.505	0.740	0.469	0.158	1.120	0.901	0.493	0.935	0.271	0.226
1233	chr10	123031038	123074520	+	0	NA	Intergenic	Intergenic	238049	NM_001320654	2263	Hs.533683	NM_000141	ENSG00000066468	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding	nan	0.724	1.238	0.034	0.265	0.123	0.203	0.282	0.081	0.061	0.065	0.032	0.263	0.030	0.087	0.329	0.315	4.505	7.973	0.125	0.190	1.043	0.309	0.116	0.125	1.169	1.323	0.430	0.504	0.448	0.521	0.098	0.197	0.112	0.155	0.381	0.851	0.104	0.179	0.027	0.070	0.022	0.053	0.203	0.032	0.116	0.037	0.043	0.239
7563	chr7	157834760	157846716	+	0	NA	intron (NM_130843, intron 10 of 21)	intron (NM_130843, intron 10 of 21)	193461	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	ncRNA	0.732	0.447	nan	0.228	0.739	0.268	0.196	0.088	0.147	0.287	0.228	0.511	0.530	0.046	0.125	3.508	6.741	0.107	0.107	0.606	0.684	0.614	0.225	0.062	0.028	0.095	0.174	0.544	0.841	0.302	0.219	1.395	1.969	0.361	0.832	0.072	0.142	1.234	1.020	1.068	0.669	0.096	0.073	0.196	0.511	0.204	0.424	1.213	0.010
1162	chr10	80663539	80698100	+	0	NA	Intergenic	MADE2|DNA|TcMar-Mariner	146386	NR_024429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA	0.817	0.977	1.255	0.539	1.450	0.790	0.459	0.159	0.042	0.082	0.072	2.148	2.110	0.046	0.063	3.131	3.434	5.103	3.124	1.476	1.407	3.422	0.993	2.211	2.396	0.350	0.530	1.888	2.201	0.454	0.520	1.191	1.950	0.326	0.307	0.372	0.674	0.683	0.533	3.104	0.509	0.064	0.213	0.459	2.148	0.292	0.308	0.654	0.162
211	chr1	37118510	37133696	+	0	NA	Intergenic	L2c|LINE|L2	-177188	NM_156039	1441	Hs.524517	NM_000760	ENSG00000119535	CSF3R	CD114|GCSFR|SCN7	colony stimulating factor 3 receptor	protein-coding	1.299	nan	0.952	0.087	0.364	0.168	0.169	0.074	0.139	0.072	0.163	0.369	0.365	0.043	0.093	0.298	0.184	0.137	0.155	0.609	0.645	nan	0.213	0.180	0.129	4.003	4.694	5.013	6.517	nan	2.018	0.397	0.451	0.357	0.495	0.650	1.625	0.728	nan	0.128	0.107	0.088	0.060	0.169	0.369	0.396	0.022	0.058	0.426
2831	chr15	31584199	31604666	+	0	NA	Intergenic	Intergenic	-24626	NM_001302461	51621	Hs.376443	NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel like factor 13	protein-coding	1.521	nan	nan	1.374	3.368	1.689	1.709	0.139	0.047	2.369	1.311	3.785	3.516	0.048	0.053	4.659	6.700	0.386	0.545	4.691	4.818	4.026	1.304	0.703	0.665	0.450	0.682	0.694	1.430	6.160	7.245	2.117	2.647	4.697	2.984	0.959	1.942	0.535	0.311	0.889	1.034	1.769	1.913	1.709	3.785	1.370	0.392	1.723	0.744
6188	chr5	14727171	14774616	+	0	NA	intron (NM_054027, intron 5 of 11)	intron (NM_054027, intron 5 of 11)	38090	NR_046285	100130744	Hs.660550	NR_046285		LOC100130744	-	uncharacterized LOC100130744	ncRNA	nan	nan	nan	0.740	0.400	0.236	0.422	0.224	0.180	0.570	0.401	0.163	nan	0.087	0.104	0.546	0.776	1.016	0.784	0.757	0.695	1.957	0.641	0.385	0.358	nan	2.314	1.132	1.545	3.026	2.713	0.278	0.489	0.773	0.598	0.433	nan	3.650	1.765	0.028	2.830	0.151	0.321	0.422	0.163	0.713	0.467	0.146	0.158
7192	chr7	20367715	20383007	+	0	NA	intron (NM_002214, intron 1 of 13)	L2c|LINE|L2	-3976	NR_110119	101927811	Hs.285724	NR_110119	ENSG00000271133	LOC101927811	-	uncharacterized LOC101927811	ncRNA	1.423	1.428	3.352	1.703	2.123	1.091	1.071	0.121	0.096	0.693	0.722	1.270	7.480	3.571	0.220	4.824	5.580	7.058	nan	4.144	2.698	3.605	2.305	3.857	3.863	3.719	4.369	3.017	5.979	0.625	0.759	0.782	1.551	1.690	1.347	1.082	nan	0.803	0.763	1.434	0.362	0.328	0.686	1.071	1.270	0.032	0.712	0.261	0.233
3315	chr17	18883085	18897132	+	0	NA	intron (NM_001039999, intron 3 of 5)	intron (NM_001039999, intron 3 of 5)	17952	NM_001039999	644815	Hs.710727	NM_001039999	ENSG00000188522	FAM83G	PAWS1	family with sequence similarity 83 member G	protein-coding	2.096	0.601	2.923	0.366	0.535	0.183	0.685	0.218	0.057	0.201	0.141	0.135	1.351	0.200	0.122	0.470	0.910	0.681	nan	0.689	0.745	3.955	1.062	0.333	0.322	1.370	1.889	1.687	1.929	nan	5.208	0.226	0.244	0.560	0.883	0.638	0.665	0.432	0.321	0.123	0.206	0.048	0.080	0.685	0.135	2.484	0.141	0.043	0.468
5404	chr3	76811378	76826882	+	0	NA	Intergenic	Intergenic	-270164	NM_001290039	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding	0.627	0.558	0.506	0.244	0.111	0.073	0.082	0.034	0.031	0.163	0.116	0.038	1.412	0.049	0.050	0.182	0.130	0.088	nan	0.264	0.282	6.202	2.931	0.111	0.143	0.297	0.396	0.483	0.513	0.415	0.145	0.092	0.129	2.534	1.868	0.223	nan	0.480	0.276	0.007	0.072	0.344	0.030	0.082	0.038	0.012	0.354	0.006	0.032
4946	chr20	36458157	36490989	+	0	NA	intron (NM_001281495, intron 14 of 16)	intron (NM_001281495, intron 14 of 16)	-56926	NM_080607	128434	Hs.517029	NM_080607	ENSG00000132821	VSTM2L	C20orf102|dJ1118M15.2	V-set and transmembrane domain containing 2 like	protein-coding	0.933	1.479	0.693	0.261	0.520	0.259	0.583	0.204	0.078	0.125	0.150	0.700	1.145	0.076	0.125	0.585	0.519	0.238	0.299	0.429	nan	1.405	0.408	0.325	0.343	0.484	0.764	0.453	0.638	0.690	0.426	0.271	0.463	0.266	0.248	0.835	nan	0.890	0.465	0.087	2.562	0.070	0.195	0.583	0.700	0.157	0.053	0.162	0.525
389	chr1	86033626	86052297	+	0	NA	intron (NM_001134445, intron 1 of 6)	intron (NM_001134445, intron 1 of 6)	1085	NM_001134445	23576	Hs.713411	NM_012137	ENSG00000153904	DDAH1	DDAH|DDAH-1|DDAHI|HEL-S-16	dimethylarginine dimethylaminohydrolase 1	protein-coding	1.338	nan	nan	0.500	0.285	0.180	0.798	3.203	0.317	0.117	0.090	0.198	1.035	6.963	0.202	0.349	0.302	3.225	7.065	0.625	0.565	0.480	0.102	0.904	1.043	0.656	1.242	0.974	1.321	0.650	0.601	0.260	0.472	0.134	0.170	0.493	0.800	0.512	0.469	0.054	0.081		0.266	0.798	0.198	0.109	0.027	0.069	0.072
3525	chr17	71026229	71046651	+	0	NA	intron (NM_001159770, intron 3 of 9)	intron (NM_001159770, intron 3 of 9)	52413	NM_139177	201266	Hs.221127	NM_139177	ENSG00000133195	SLC39A11	C17orf26|ZIP11	solute carrier family 39 member 11	protein-coding	1.138	0.785	1.142	0.140	0.418	0.149	0.256	1.208	0.260	0.123	0.133	0.117	0.540	0.048	0.099	0.916	0.998	0.235	0.241	0.331	0.316	0.354	0.205	0.289	0.284	nan	2.559	0.282	0.370	3.462	3.884	0.209	0.270	0.251	0.348	0.524	1.576	nan	0.544	0.071	0.100	0.048	0.246	0.256	0.117	0.261	0.054	0.059	0.248
3207	chr16	85740217	85756768	+	0	NA	intron (NM_206967, intron 2 of 3)	AluY|SINE|Alu	-25904	NM_016095	51659	Hs.433180	NM_016095	ENSG00000131153	GINS2	HSPC037|PSF2|Pfs2	GINS complex subunit 2	protein-coding	nan	1.236	1.145	1.550	3.142	1.807	8.622	0.100	0.138	0.298	0.144	3.900	2.863	0.070	0.077	0.572	0.781	0.257	0.449	5.066	5.193	3.261	0.754	0.441	0.356	0.317	0.537	3.671	4.242	2.151	1.799	0.312	0.287	0.850	0.786	0.362	0.851	2.729	1.533	1.637	2.999	0.166	0.167	8.622	3.900	0.555	1.793	0.048	0.277
6649	chr6	20400316	20410256	+	0	NA	intron (NM_001243076, intron 1 of 6)	intron (NM_001243076, intron 1 of 6)	1376	NM_001243076	1871	Hs.269408	NM_001949	ENSG00000112242	E2F3	E2F-3	E2F transcription factor 3	protein-coding	6.320	2.433	nan	4.042	4.215	2.421	4.258	2.888	0.342	2.090	0.715	6.982	nan	3.125	0.094	6.311	4.846	5.783	nan	7.340	4.295	nan	2.385	11.982	12.573	4.945	6.598	5.766	8.882	5.870	7.170	2.065	3.922	5.873	5.099	9.785	7.965	2.222	1.531	2.904	3.083	1.168	2.562	4.258	6.982	1.299	2.199	1.304	3.793
7023	chr6	145848877	145857955	+	0	NA	Intergenic	LTR22C|LTR|ERVK	-202589	NR_038246	100507557	Hs.124537	NR_038244	ENSG00000235652	LOC100507557	-	uncharacterized LOC100507557	ncRNA	nan	0.900	nan	0.397	0.409	0.194	0.270	0.041	0.035	0.705	0.247	0.586	0.853	0.047	0.103	1.158	0.866	10.855	7.471	0.432	0.488	0.177	0.100	0.238	0.270	0.118	0.164	0.092	0.143	0.555	0.253	0.305	0.416	0.124	0.265	0.157	0.263	1.317	0.768	0.031	0.724	0.084		0.270	0.586		0.022	0.022	0.067
966	chr1	244486745	244536644	+	0	NA	Intergenic	Intergenic	-4243	NM_001276349	200159	Hs.442703	NM_001012970	ENSG00000173728	C1orf100	-	chromosome 1 open reading frame 100	protein-coding	nan	1.463	nan	0.504	1.058	0.442	0.786	0.203	0.135	0.374	0.324	0.619	1.096	0.103	0.103	0.858	0.555	1.650	2.521	0.941	1.005	4.970	1.729	0.657	0.700	0.281	0.507	0.417	0.531	0.284	0.159	0.173	0.371	0.581	0.829	0.321	0.519	0.804	0.559	0.286	0.220	0.084	0.143	0.786	0.619	0.107	0.165	0.245	0.122
2216	chr12	132625558	132630328	+	0	NA	intron (NM_175066, intron 2 of 14)	CpG	937	NM_175066	317781	Hs.445168	NM_175066	ENSG00000185163	DDX51	-	DEAD-box helicase 51	protein-coding	2.416	1.827	2.437	1.531	1.471	1.040	1.975	0.828	0.102	1.187	0.706	1.997	2.632	1.410	0.097	1.953	2.330	2.339	3.986	3.490	2.702	4.962	1.543	3.259	3.390	1.324	2.065	nan	4.486	2.639	3.583	1.740	2.691	3.297	2.810	2.025	2.075	2.772	1.866	0.628	1.751	0.220	13.430	1.975	1.997	0.689	1.383	0.082	0.391
2314	chr13	53224806	53228356	+	0	NA	promoter-TSS (NM_001130912)	promoter-TSS (NM_001130912)	-245	NM_001130912	10910	Hs.281902	NM_006704	ENSG00000165416	SUGT1	SGT1	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone	protein-coding	5.763	6.435	5.151	4.978	5.166	2.518	2.611	3.710	0.137	1.981	1.455	7.188	10.767	4.875	0.136	14.787	14.263	6.694	9.857	13.994	13.738	13.547	10.118	13.377	14.211	5.776	6.960	10.122	15.456	13.135	13.684	11.065	16.335	6.227	7.287	12.678	13.034	1.809	1.064	4.668	5.154	1.065	4.954	2.611	7.188	3.040	1.666	4.894	3.302
218	chr1	37699865	37734541	+	0	NA	Intergenic	Intergenic	90039	NR_036217	100422898		NR_036217	ENSG00000264698	MIR4255	-	microRNA 4255	ncRNA	0.988	nan	1.824	0.154	0.707	0.402	1.055	0.063	0.076	0.258	0.182	0.183	2.923	0.050	0.097	0.497	0.550	0.103	0.097	0.676	0.755	nan	0.418	0.151	0.151	0.575	0.946	1.809	2.914	nan	0.442	1.054	1.096	0.920	0.979	0.527	1.517	2.173	nan	3.326	0.231	0.339	0.260	1.055	0.183	0.204	0.152	0.345	0.097
5918	chr4	57841404	57846918	+	0	NA	promoter-TSS (NM_000938)	promoter-TSS (NM_000938)	-335	NM_032313	84273	Hs.8715	NM_032313	ENSG00000084092	NOA1	C4orf14|MTG3|hAtNOS1|hNOA1|mAtNOS1	nitric oxide associated 1	protein-coding	nan	2.036	3.754	7.013	4.034	2.413	2.819	1.537	0.496	2.269	1.432	2.974	6.353	2.025	0.183	4.632	5.635	4.975	8.328	4.960	3.714	8.765	3.124	10.525	10.532	4.626	6.190	8.768	14.151	5.906	7.366	2.304	5.367	3.632	3.558	3.723	4.986	9.255	5.139	2.228	4.302	0.503	2.486	2.819	2.974	0.510	3.297	1.297	1.324
2345	chr13	74092353	74103051	+	0	NA	Intergenic	Intergenic	-40679	NR_047009	100874155	Hs.672679	NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA	nan	1.717	0.585	0.107	0.413	0.165	0.349	0.119	0.089	0.044	0.031	0.141	2.608	0.050	0.059	0.550	0.350	0.263	0.413	0.590	0.589	nan	0.175	0.087	0.133	0.058	0.078	0.269	0.374	nan	0.160	0.246	0.387	0.059	0.109	0.350	nan	0.180	0.175	0.488	4.918		0.127	0.349	0.141	0.009	0.057	0.055	0.023
6902	chr6	110662977	110682970	+	0	NA	intron (NM_001123364, intron 1 of 4)	intron (NM_001123364, intron 1 of 4)	6502	NM_001123364	728464	Hs.722171	NM_001123364	ENSG00000053328	METTL24	C6orf186|dJ71D21.2	methyltransferase like 24	protein-coding	nan	0.858	nan	0.607	0.261	0.169	0.491	0.122	0.096	0.368	0.155	1.198	0.439	0.093	0.122	0.853	0.756	0.422	0.352	0.639	nan	nan	0.619	0.811	0.716	0.313	nan	0.328	0.411	1.451	1.394	3.404	5.411	0.908	0.978	1.069	nan	0.565	0.495	0.332	0.584	0.176	3.400	0.491	1.198	0.602	0.046	5.869	0.408
3124	chr16	33864818	33884305	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	87942	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA	3.671	4.077	3.527	0.568	1.234	0.707	0.893	0.556	5.183	0.573	1.514	0.386	1.713	0.264	1.703	1.276	0.519	0.375	0.497	0.893	1.527	0.486	0.342	0.642	0.622	1.100	1.519	0.798	0.857	1.631	0.524	0.509	1.045	0.408	0.693	0.523	1.032	0.471	0.740	0.160	0.621	0.478	0.374	0.893	0.386	0.140	0.177	0.500	0.572
5261	chr22	37928855	37942841	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-20623	NM_152243	11135	Hs.225356	NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding	1.578	nan	0.581	0.088	0.336	0.206	0.412	0.529	0.229	0.078	0.095	0.215	0.553	0.319	0.119	1.197	1.515	2.891	6.485	0.424	0.480	0.264	0.090	0.320	0.372	0.332	nan	0.279	0.306	nan	1.603	0.458	0.520	0.104	0.175	0.250	0.491	0.483	0.451	0.072	0.121	0.014	0.608	0.412	0.215	0.528	0.199	0.178	0.062
5473	chr3	114153425	114178066	+	0	NA	intron (NM_001164343, intron 8 of 11)	intron (NM_001164343, intron 8 of 11)	-6695	NR_121661	101929754	Hs.614195	NR_121661	ENSG00000242290	ZBTB20-AS5	-	ZBTB20 antisense RNA 5	ncRNA	1.111	nan	0.713	0.302	1.552	0.678	1.302	1.299	0.175	0.838	0.493	4.300	3.918	0.092	0.068	6.998	8.245	10.474	12.929	6.588	nan	1.993	0.613	0.269	0.328	nan	2.694	0.346	0.382	2.329	1.601	2.895	4.690	0.274	0.232	0.299	0.416	2.721	1.816	3.111	0.749	0.050	0.187	1.302	4.300	0.401	0.132	2.445	0.095
2567	chr14	38022972	38037648	+	0	NA	Intergenic	L2c|LINE|L2	34015	NM_004496	3169	Hs.163484	NM_004496	ENSG00000129514	FOXA1	HNF3A|TCF3A	forkhead box A1	protein-coding	1.113	5.151	0.862	0.115	0.185	0.153	0.130	0.122	0.175	0.112	0.090	0.090	0.431	0.237	0.111	0.189	0.143	0.181	0.380	0.271	0.338	0.350	0.157	0.224	0.257	0.704	0.889	0.288	0.379	0.818	0.337	0.131	0.248	1.186	1.136	0.287	0.514	0.692	0.590	0.046	0.383	0.189	0.118	0.130	0.090	0.033	0.152	0.060	0.149
4321	chr2	46106170	46121619	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	234851	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding	2.191	nan	1.426	0.416	0.980	0.540	0.398	2.055	0.187	0.343	0.162	0.521	1.212	0.056	0.113	0.345	0.254	0.296	0.388	nan	1.727	3.183	1.399	0.368	0.526	1.693	2.214	2.318	3.629	4.645	4.243	0.266	0.304	0.240	0.189	1.026	nan	nan	0.689	2.479	4.891	0.037	0.180	0.398	0.521	0.989	0.092	0.077	1.586
6052	chr4	154212005	154224841	+	0	NA	intron (NM_001130067, intron 6 of 11)	intron (NM_001130067, intron 6 of 11)	11540	NR_001562	303	Hs.546235	NR_001562		ANXA2P1	ANX2L1|ANX2P1|LPC2A	annexin A2 pseudogene 1	pseudo	nan	0.789	0.454	0.217	0.282	0.098	0.099	0.216	0.146	0.049	0.065	0.102	0.275	0.033	0.086	0.215	0.247	3.807	7.377	0.195	0.245	0.184	0.112	0.178	0.166	0.203	0.330	0.454	0.456	0.299	0.202	0.143	0.321	0.079	0.099	0.180	0.398	0.315	0.190	0.017	0.077	0.022	0.055	0.099	0.102		0.023	0.077	0.073
3289	chr17	15901458	15904486	+	0	NA	promoter-TSS (NM_001042698)	promoter-TSS (NM_001042698)	34	NM_001042698	125150	Hs.593985	NM_001042697	ENSG00000214941	ZSWIM7	SWS1	zinc finger SWIM-type containing 7	protein-coding	8.970	3.999	4.523	3.739	7.003	3.051	6.604	1.638	0.365	1.195	0.929	5.060	8.786	1.465	0.081	5.338	6.606	7.436	11.796	9.960	7.407	10.314	3.534	7.727	6.747	3.249	4.538	11.099	15.697	11.608	14.477	2.095	4.082	3.783	2.898	7.538	6.920	2.446	1.420	2.001	3.406	0.346	2.301	6.604	5.060	1.564	12.419	1.202	3.292
2188	chr12	123007960	123013482	+	0	NA	intron (NR_036436, intron 1 of 9)	intron (NR_036436, intron 1 of 9)	839	NR_036434	65117	Hs.432996	NM_023012	ENSG00000111011	RSRC2	-	arginine and serine rich coiled-coil 2	protein-coding	5.258	3.041	3.061	5.256	6.209	3.454	3.673	2.816	0.376	2.711	1.623	5.087	11.970	5.590	0.155	8.046	6.178	8.659	11.188	10.018	10.440	nan	6.762	16.673	17.646	6.008	8.036	10.641	14.813	10.764	9.375	6.915	10.868	7.785	11.502	11.086	9.084	4.817	2.857	3.863	4.150	1.477	1.899	3.673	5.087	1.339	2.507	2.923	1.972
1778	chr12	3860364	3863811	+	0	NA	intron (NM_032680, intron 1 of 10)	CpG	279	NM_001144958	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding	3.882	nan	2.769	3.327	0.334	0.220	0.484	0.096	0.048	0.080	0.065	3.209	0.470	0.910	0.100	0.712	0.545	0.093	0.222	nan	0.936	6.485	1.489	2.877	3.146	0.554	0.999	1.960	2.416	0.728	1.280	1.562	1.639	1.886	1.293	2.679	nan	0.900	0.772	0.129	0.052	0.138	6.022	0.484	3.209	4.720	1.384	0.335	3.765
8422	chrX	153230983	153241626	+	0	NA	TTS (NR_046608)	TTS (NR_046608)	515	NM_005334	3054	Hs.83634	NM_005334	ENSG00000172534	HCFC1	CFF|HCF|HCF-1|HCF1|HFC1|MRX3|PPP1R89|VCAF	host cell factor C1	protein-coding	5.075	4.125	5.811	3.792	9.214	4.585	6.320	1.379	0.091	1.383	0.559	4.580	8.689	1.877	0.043	8.162	8.210	4.513	6.273	10.214	9.679	6.886	5.155	15.622	16.585	2.598	3.462	6.692	9.831	9.043	9.738	4.366	6.228	4.756	5.613	7.942	5.863	2.418	1.419	4.007	9.378	1.152	4.110	6.320	4.580	1.207	1.830	2.052	2.610
2339	chr13	72084907	72102556	+	0	NA	intron (NM_004392, intron 3 of 7)	intron (NM_004392, intron 3 of 7)	347599	NM_080759	1602	Hs.129452	NM_004392	ENSG00000276644	DACH1	DACH	dachshund family transcription factor 1	protein-coding	nan	1.110	0.973	0.046	0.738	0.452	0.333	0.071	0.070	0.116	0.150	0.264	0.292	0.043	0.091	0.647	0.654	0.211	0.329	1.193	1.348	nan	0.202	0.126	0.140	1.083	1.381	0.376	0.427	nan	6.192	0.193	0.394	1.222	2.471	1.367	nan	0.177	0.111	0.050	0.174	0.470	4.513	0.333	0.264	1.218	0.730	0.118	1.015
6865	chr6	87860600	87867389	+	0	NA	Intergenic	Intergenic	-1275	NM_015021	23036	Hs.485892	NM_015021	ENSG00000188994	ZNF292	Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3	zinc finger protein 292	protein-coding	6.332	3.628	nan	6.424	7.945	4.276	5.770	1.571	0.070	2.724	1.955	7.766	12.154	5.260	0.180	9.596	10.298	3.886	5.371	12.216	11.344	9.267	4.600	10.501	11.092	3.878	4.458	6.192	10.558	11.259	12.887	6.248	10.282	8.752	9.238	3.943	3.251	3.021	1.432	3.687	4.520	2.335	4.392	5.770	7.766	0.629	3.743	4.021	1.369
8385	chrX	46155666	46204286	+	0	NA	Intergenic	Intergenic	7133	NR_110388	101927574	Hs.350952	NR_110388	ENSG00000236751	LINC01186	-	long intergenic non-protein coding RNA 1186	ncRNA	0.538	0.658	nan	0.034	0.161	0.092	0.124	0.326	0.099	0.112	0.115	0.035	0.284	2.587	0.095	0.101	0.067	0.493	2.032	0.177	0.202	0.442	0.121	0.157	0.156	0.094	0.166	0.137	0.149	0.416	0.246	0.080	0.088	0.074	0.126	0.184	0.554	0.421	0.259	0.024	0.022	0.012	0.020	0.124	0.035	0.014	0.012	0.022	0.071
5986	chr4	106463395	106492910	+	0	NA	intron (NM_001242729, intron 1 of 13)	intron (NM_001242729, intron 1 of 13)	4375	NM_001242729	54848	Hs.585224	NM_017700	ENSG00000236699	ARHGEF38	-	Rho guanine nucleotide exchange factor 38	protein-coding	0.714	nan	nan	1.033	1.768	0.911	0.394	0.151	0.082	0.543	0.370	1.451	0.550	0.040	0.064	1.067	1.222	4.007	nan	0.534	0.497	0.230	0.128	1.357	1.363	0.461	nan	0.679	0.790	0.404	0.162	0.539	0.739	1.388	1.515	0.262	nan	0.829	0.570	0.013	0.139	0.250	0.132	0.394	1.451	0.003	0.085	0.306	0.131
160	chr1	27372175	27399245	+	0	NA	Intergenic	Intergenic	-46377	NM_052943	115572	Hs.632378	NM_052943	ENSG00000158246	FAM46B	-	family with sequence similarity 46 member B	protein-coding	1.501	1.128	nan	0.439	1.002	0.368	0.806	0.099	0.137	0.064	0.066	0.164	0.692	0.092	0.090	1.687	2.088	0.547	0.577	1.109	1.052	1.181	0.425	0.386	0.430	1.149	1.588	0.479	0.706	1.388	1.361	0.928	1.583	0.363	0.285	1.522	4.739	1.053	0.742	2.394	2.108	0.099	0.291	0.806	0.164	0.783	0.124	1.394	1.245
7177	chr7	15469872	15474929	+	0	NA	intron (NM_001004320, intron 3 of 12)	intron (NM_001004320, intron 3 of 12)	129240	NM_001004320	392636	Hs.670634	NM_001004320	ENSG00000187546	AGMO	TMEM195	alkylglycerol monooxygenase	protein-coding	nan	1.518	nan	1.356	1.748	1.112	0.205	0.162	0.003	1.738	0.702	0.718	0.304	0.042	0.167	nan	0.227	0.119	0.218	0.612	0.841	10.729	8.564	0.482	0.463	0.527	0.720	4.496	3.009	0.242	0.105	0.097	0.269	3.969	7.754	0.231	0.411	1.481	0.785	0.011	0.087	0.565	0.031	0.205	0.718	0.019	0.562	0.026	0.049
98	chr1	15809501	15819789	+	0	NA	intron (NM_015849, intron 7 of 7)	AluJr|SINE|Alu	12049	NM_015849	51032	Hs.631871	NM_015849	ENSG00000215704	CELA2B	ELA2B	chymotrypsin like elastase family member 2B	protein-coding	1.085	0.715	nan	3.102	0.293	0.250	0.213	0.115	0.032	0.076	0.065	0.316	1.282	0.103	0.098	0.692	0.932	0.287	0.288	7.205	5.362	1.590	0.550	0.357	nan	0.362	nan	4.494	5.449	nan	0.723	0.230	0.305	0.083	0.049	0.499	1.230	0.736	0.625	0.892	1.010	0.009	0.054	0.213	0.316	0.095	0.327	0.029	0.205
7459	chr7	120360395	120385475	+	0	NA	intron (NM_012281, intron 1 of 5)	intron (NM_012281, intron 1 of 5)	125242	NM_012338	23554	Hs.16529	NM_012338	ENSG00000106025	TSPAN12	EVR5|NET-2|NET2|TM4SF12	tetraspanin 12	protein-coding	1.117	0.634	1.100	1.111	0.328	0.185	0.072	0.186	0.120	0.774	0.265	1.470	0.861	0.054	0.142	0.450	0.469	0.282	0.393	0.538	0.550	3.484	0.998	0.345	0.330	1.944	2.380	1.358	1.792	0.585	0.276	0.193	0.340	5.045	8.173	0.650	1.175	1.847	1.242	0.034	0.334	0.929	0.118	0.072	1.470	0.035	1.723	0.071	0.123
1278	chr11	1997702	2015407	+	0	NA	intron (NR_024471, intron 2 of 3)	intron (NR_024471, intron 2 of 3)	4596	NR_024471	100133545	Hs.677620	NR_024471	ENSG00000226416	MRPL23-AS1	-	MRPL23 antisense RNA 1	ncRNA	1.568	1.980	2.070	0.650	0.617	0.388	0.376	0.055	0.082	0.676	0.274	0.307	0.830	0.043	0.043	0.936	2.480	0.137	0.223	0.508	0.467	2.611	1.139	0.236	0.203	0.115	0.236	1.025	1.519	0.196	0.235	1.100	1.433	3.605	3.634	0.106	0.085	3.148	1.750	1.008	0.055	1.152	0.018	0.376	0.307	0.137	3.939	0.469	0.014
2901	chr15	62351336	62383505	+	0	NA	Intergenic	Intergenic	8244	NM_207322	145741	Hs.202656	NM_207322	ENSG00000198535	C2CD4A	FAM148A|NLF1	C2 calcium dependent domain containing 4A	protein-coding	1.008	1.516	nan	0.815	0.789	0.364	0.265	0.394	0.162	0.643	0.419	0.989	1.366	0.151	0.089	0.514	0.432	0.801	1.110	0.975	0.871	nan	0.801	0.464	0.433	0.647	0.921	1.690	2.153	0.780	0.706	0.391	0.651	1.790	2.004	0.411	0.656	0.845	0.550	0.522	0.506	0.359	0.265	0.265	0.989	0.214	2.999	0.153	0.119
2434	chr13	108866091	108880403	+	0	NA	intron (NM_032859, intron 1 of 1)	intron (NM_032859, intron 1 of 1)	2484	NM_032859	84945	Hs.183528	NM_032859	ENSG00000139826	ABHD13	BEM46L1|C13orf6|bA153I24.2	abhydrolase domain containing 13	protein-coding	1.681	1.907	1.616	1.499	1.450	0.937	2.026	0.738	0.134	0.659	0.358	2.265	3.593	0.787	0.094	3.588	3.719	1.920	2.620	3.676	3.269	5.640	4.225	2.099	2.067	0.546	nan	2.869	3.969	2.403	2.216	1.301	2.267	2.131	1.932	2.551	nan	0.688	0.458	1.284	2.306	0.327	1.395	2.026	2.265	0.264	1.966	0.505	1.065
1381	chr11	34633585	34691623	+	0	NA	intron (NM_001206616, intron 1 of 8)	MIRb|SINE|MIR	8593	NM_001206616	26298	Hs.653859	NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding	0.616	1.368	nan	0.492	1.108	0.580	0.510	0.200	0.077	0.464	0.270	3.412	3.097	0.049	0.114	1.798	2.658	8.154	9.791	0.587	0.843	3.193	1.089	0.657	0.635	0.247	0.390	0.659	0.616	0.241	0.120	1.339	2.648	0.318	0.347	0.140	nan	0.564	0.563	1.067	0.238	0.129	0.044	0.510	3.412	0.028	0.203	1.611	0.141
3735	chr18	34754501	34765108	+	0	NA	intron (NM_020776, intron 9 of 9)	intron (NM_020776, intron 9 of 9)	-94619	NR_134588	105372068	Hs.569903	NR_134588	ENSG00000267202	LOC105372068	-	uncharacterized LOC105372068	ncRNA	nan	0.977	1.822	0.342	0.558	0.271	0.401	0.063	0.030	0.401	0.133	0.282	0.386	0.070	0.118	0.992	0.525	0.310	0.282	0.928	0.983	8.889	2.420	0.110	0.125	0.467	0.830	nan	2.639	0.748	0.459	0.203	0.275	3.558	3.228	0.429	0.911	3.241	2.437	0.053	0.085	0.661	0.134	0.401	0.282	0.009	0.860	0.056	0.211
3732	chr18	32922956	32928836	+	0	NA	Intergenic	Intergenic	-1465	NM_001308123	7572	Hs.514802	NM_006965	ENSG00000172466	ZNF24	KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191	zinc finger protein 24	protein-coding	nan	3.548	2.798	5.553	3.520	1.817	5.115	0.985	0.167	1.460	0.434	4.318	8.272	1.548	0.050	4.382	4.390	3.608	5.011	5.739	5.708	7.563	5.082	3.845	3.873	1.360	2.123	nan	17.303	3.153	3.100	1.534	2.063	5.566	6.760	2.873	2.333	8.717	4.782	4.144	3.062	0.993	1.670	5.115	4.318	0.657	2.348	0.893	0.715
4921	chr20	31240087	31276705	+	0	NA	Intergenic	AluSg|SINE|Alu	-18613	NM_182584	284805	Hs.353262	NM_182584		C20orf203	-	chromosome 20 open reading frame 203	protein-coding	1.022	2.100	1.272	1.877	0.546	0.287	0.247	0.175	0.260	1.121	0.510	0.925	2.002	0.102	0.124	0.927	1.244	0.320	0.435	0.635	nan	3.454	0.889	0.527	0.637	0.385	0.624	4.693	3.361	0.841	0.629	0.458	0.628	0.715	0.799	0.413	nan	1.509	0.746	0.616	1.010	0.149	0.148	0.247	0.925	0.096	0.782	0.102	0.187
8063	chr9	14336924	14355612	+	0	NA	intron (NM_001190738, intron 1 of 8)	CpG	-32223	NM_001190737	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding	nan	nan	2.491	0.962	0.567	0.306	0.511	1.018	0.163	1.392	0.976	1.259	2.163	0.179	0.080	0.228	0.115	1.137	1.853	1.460	1.264	2.188	0.752	0.194	0.189	47.709	48.713	0.698	0.683	0.341	0.271	0.288	0.421	0.535	0.375	0.184	0.454	8.146	4.948	2.067	0.081	0.133	0.166	0.511	1.259	0.041	0.223	0.063	0.053
586	chr1	156162023	156165079	+	0	NA	promoter-TSS (NM_001286184)	promoter-TSS (NM_001286184)	-172	NR_104411	9673	Hs.532375	NM_014655	ENSG00000160785	SLC25A44	-	solute carrier family 25 member 44	protein-coding	nan	nan	4.092	2.589	2.918	1.775	3.027	3.446	0.668	3.037	1.319	4.245	21.079	2.949	0.232	2.344	2.519	4.078	6.857	6.462	nan	5.858	2.875	2.906	2.999	3.252	4.384	8.099	12.756	5.502	5.324	3.294	4.832	4.740	5.109	4.518	5.579	2.240	1.232	1.500	5.409	0.650	1.392	3.027	4.245	0.855	3.136	1.680	2.268
7828	chr8	99372499	99382316	+	0	NA	Intergenic	Intergenic	-61843	NM_020697	3788	Hs.388045	NM_020697	ENSG00000156486	KCNS2	KV9.2	potassium voltage-gated channel modifier subfamily S member 2	protein-coding	nan	0.729	7.976	0.380	0.362	0.093	0.269	0.293	0.117	0.095	0.064	0.219	0.612	0.022	0.094	0.367	0.294	0.232	nan	0.713	0.736	1.002	0.235	0.266	0.313	0.497	0.670	0.812	0.962	1.053	0.947	0.381	0.547	0.279	0.312	0.366	0.558	0.967	0.757	0.119	0.064	0.039	0.025	0.269	0.219	0.149	0.487	0.130	0.188
7920	chr8	126725109	126739927	+	0	NA	Intergenic	LTR82A|LTR|ERVL	230923	NR_038447	100130231	Hs.729642	NR_038446	ENSG00000245164	LINC00861	-	long intergenic non-protein coding RNA 861	ncRNA	nan	nan	nan	1.085	0.230	0.152	0.069	0.123	0.088	0.138	0.068	0.153	nan	0.030	0.079	0.269	0.182	0.197	0.241	0.463	0.591	5.071	1.238	nan	nan	0.201	0.272	0.228	0.246	27.170	16.702	0.123	0.210	0.102	0.143	0.225	0.333	1.164	0.798	0.045	0.072	0.033	0.032	0.069	0.153	0.013	0.091	0.041	0.102
410	chr1	95384042	95394139	+	0	NA	intron (NM_001839, intron 1 of 6)	intron (NM_001839, intron 1 of 6)	2274	NM_001286056	1266	Hs.483454	NM_001839	ENSG00000117519	CNN3	-	calponin 3	protein-coding	nan	nan	3.445	1.594	3.543	1.947	1.739	3.728	0.399	0.824	0.767	3.514	7.784	2.037	0.163	3.478	4.072	6.304	8.287	5.582	nan	5.096	1.840	3.453	3.701	3.801	nan	3.333	4.701	nan	2.634	1.480	3.999	1.546	1.239	3.007	3.029	1.972	1.259	3.111	3.354	0.330	2.634	1.739	3.514	0.385	0.723	1.946	1.595
3193	chr16	84021800	84036732	+	0	NA	intron (NM_001329748, intron 8 of 11)	intron (NM_001329748, intron 8 of 11)	27029	NM_001329748	54550	Hs.140950	NM_019065	ENSG00000103154	NECAB2	EFCBP2|stip-2	N-terminal EF-hand calcium binding protein 2	protein-coding	nan	0.670	0.675	0.170	0.330	0.174	6.291	0.091	0.039	0.074	0.079	0.442	0.712	0.066	0.054	0.362	0.433	0.188	0.239	0.541	0.589	0.866	0.598	0.276	0.240	0.113	0.167	0.258	0.582	0.366	0.322	0.190	0.225	0.313	0.435	0.219	0.548	0.742	0.572	0.294	0.420	0.102	0.150	6.291	0.442	0.376	0.137	0.133	0.108
3019	chr16	1478899	1492402	+	0	NA	intron (NM_001143980, intron 14 of 16)	AluSp|SINE|Alu	8840	NM_001143980	645811	Hs.355232	NM_001143980	ENSG00000197599	CCDC154	C16orf29	coiled-coil domain containing 154	protein-coding	0.814	nan	1.132	2.180	1.055	0.573	0.417	0.067	0.071	1.447	0.680	1.981	0.874	0.062	0.105	0.678	0.835	0.156	0.150	0.893	0.962	nan	1.817	0.619	0.607	0.173	nan	2.288	2.605	0.396	0.323	0.488	0.264	1.195	0.890	0.266	0.198	1.172	0.741	0.839	0.373	0.239	0.077	0.417	1.981	0.057	1.139	0.037	0.056
6286	chr5	59123116	59172028	+	0	NA	intron (NM_001165899, intron 3 of 16)	MLT1E|LTR|ERVL-MaLR	42049	NM_001104631	5144	Hs.117545	NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding	nan	nan	1.327	0.056	0.273	0.123	0.144	0.597	0.108	0.061	0.075	0.044	0.253	0.051	0.110	0.209	0.128	0.379	0.422	0.213	0.295	nan	0.125	0.111	0.140	4.189	4.434	0.462	0.299	nan	0.178	0.069	0.106	0.161	0.335	0.225	0.487	0.296	0.329	0.032	0.111	0.078	0.036	0.144	0.044	0.008	0.039	0.024	0.164
1185	chr10	99571305	99612476	+	0	NA	intron (NR_108035, intron 1 of 2)	L2b|LINE|L2	17665	NR_108035	100505561	Hs.351904	NR_108035	ENSG00000227356	LINC00866	-	long intergenic non-protein coding RNA 866	ncRNA	0.709	1.421	1.732	0.650	0.529	0.284	0.240	0.074	0.119	0.148	0.111	0.774	1.421	0.047	0.088	0.800	1.034	0.144	0.224	1.071	0.911	1.992	0.410	0.089	0.097	0.240	0.417	nan	4.397	0.552	0.415	0.187	0.269	0.226	0.272	0.334	0.735	0.726	0.505	0.434	0.806	0.033	0.073	0.240	0.774	0.228	0.920	0.069	0.100
4637	chr2	183490409	183504197	+	0	NA	Intergenic	Intergenic	-83465	NR_073365	54431	Hs.516632	NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.870	1.180	1.080	0.971	0.439	0.258	0.685	0.108	0.103	0.616	0.313	0.633	0.535	0.024	0.079	0.300	0.237	0.241	0.274	1.179	1.414	2.867	1.342	0.699	0.770	nan	4.220	4.041	4.301	0.499	0.259	0.153	0.200	1.113	0.841	0.422	nan	0.645	0.517	0.238	0.148	0.028	0.296	0.685	0.633	0.070	0.044	0.014	0.099
7522	chr7	141664730	141677078	+	0	NA	Intergenic	L1MEf|LINE|L1	2669	NM_176817	5726	Hs.647085	NM_176817	ENSG00000257138	TAS2R38	PTC|T2R38|T2R61	taste 2 receptor member 38	protein-coding	0.696	0.514	0.813	0.164	0.163	0.092	0.155	0.066	0.065	0.203	0.196	0.116	0.232	0.052	0.166	0.671	0.403	0.227	0.370	0.172	0.165	0.197	0.111	45.747	50.015	0.160	0.220	0.170	0.241	0.397	0.305	0.217	0.409	0.429	0.352	0.166	0.342	1.679	nan	0.050	0.152	0.047	0.064	0.155	0.116	0.047	0.049	0.071	0.030
1741	chr11	131992666	132032145	+	0	NA	intron (NM_001144058, intron 1 of 7)	intron (NM_001144058, intron 1 of 7)	-141791	NR_046820	100874281		NR_046820		NTM-IT	NTM-IT3	NTM intronic transcript	ncRNA	0.478	nan	0.609	1.938	1.610	0.844	0.690	0.025	0.078	1.119	0.829	3.076	nan	0.041	0.089	0.543	0.531	0.182	0.180	3.158	4.005	4.190	1.528	0.155	0.186	0.170	0.263	2.740	2.621	0.352	0.210	0.249	0.309	1.542	1.967	0.138	0.173	2.847	1.634	0.493	0.870	0.373	0.105	0.690	3.076	0.012	0.269	0.056	0.066
1130	chr10	70087136	70095538	+	0	NA	promoter-TSS (NM_001322450)	promoter-TSS (NM_001322450)	-113	NM_001322438	3189	Hs.643472	NM_012207	ENSG00000096746	HNRNPH3	2H9|HNRPH3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	5.475	nan	4.843	4.161	7.318	4.595	2.814	6.569	0.769	1.857	0.650	6.633	7.741	4.781	0.127	7.708	6.152	7.659	11.559	9.164	8.732	8.445	5.340	8.763	9.172	4.089	5.007	10.002	nan	6.190	6.101	3.517	5.353	5.133	4.739	6.955	nan	2.927	1.677	3.100	2.701	1.159	2.860	2.814	6.633	0.955	1.391	1.736	2.199
189	chr1	32797469	32808516	+	0	NA	Intergenic	Intergenic	-1152	NR_052852	65108	Hs.75061	NM_023009	ENSG00000175130	MARCKSL1	F52|MACMARCKS|MLP|MLP1|MRP	MARCKS like 1	protein-coding	3.033	nan	2.809	3.067	2.209	1.082	1.803	0.335	0.087	1.876	0.862	4.113	4.266	1.641	0.113	6.365	8.449	2.741	3.589	4.428	4.499	nan	1.032	4.240	4.262	1.832	2.684	1.852	2.571	nan	2.773	2.586	5.594	1.397	0.759	2.079	2.034	1.152	nan	1.697	1.952	0.243	1.330	1.803	4.113	0.395	1.117	1.550	0.681
6216	chr5	28578811	28585962	+	0	NA	Intergenic	L1MB4|LINE|L1	-294614	NR_134265	105374698	Hs.124461	NR_134265	ENSG00000249785	LINC02103	-	long intergenic non-protein coding RNA 2103	ncRNA	0.657	1.178	0.978	0.357	0.156	0.134	0.053	0.560	0.227	0.199	0.299	0.117	0.388	0.015	0.130	1.479	1.072	8.437	2.366	0.509	0.410	0.250	0.084	0.556	0.436	nan	0.551	0.512	0.496	0.645	0.487	0.444	1.068	0.112	0.078	0.174	0.229	nan	0.508	0.031	0.087		0.011	0.053	0.117		0.156	0.427	
4918	chr20	31104281	31132641	+	0	NA	intron (NM_001256798, intron 1 of 10)	AluSp|SINE|Alu	20699	NR_110619	101929698	Hs.638392	NR_110619	ENSG00000277301	LOC101929698	-	uncharacterized LOC101929698	ncRNA	2.657	3.529	1.632	2.219	3.533	1.948	2.186	0.151	0.102	0.944	0.531	4.190	4.484	0.142	0.104	4.001	5.681	0.464	0.603	5.715	nan	4.180	1.708	1.906	1.857	0.843	1.266	5.213	4.081	4.451	4.777	1.970	2.809	2.011	1.764	0.729	nan	1.517	0.691	7.020	3.967	0.544	2.406	2.186	4.190	1.303	0.866	2.261	0.297
2330	chr13	67871119	67884407	+	0	NA	Intergenic	Intergenic	-68756	NR_130792	100874145	Hs.508194	NR_130792	ENSG00000230040	LINC00364	-	long intergenic non-protein coding RNA 364	ncRNA	nan	1.128	nan	0.065	0.103	0.037	0.265	0.078	0.073	0.091	0.049	0.136	0.305	0.057	0.064	0.593	0.347	0.084	0.153	0.365	0.421	3.365	1.111	0.118	0.062	0.393	0.607	0.216	0.220	0.511	0.404	0.101	0.215	8.700	14.206	0.508	1.064	0.081	0.169	0.029	0.046	2.350	0.569	0.265	0.136	0.205	0.015	0.030	0.112
2849	chr15	39845175	39851431	+	0	NA	Intergenic	MIR|SINE|MIR	-24977	NM_003246	7057	Hs.164226	NM_003246	ENSG00000137801	THBS1	THBS|THBS-1|TSP|TSP-1|TSP1	thrombospondin 1	protein-coding	1.569	nan	nan	0.395	0.563	0.206	1.506	0.247	0.104	0.504	0.244	2.594	6.392	0.036	0.076	0.466	0.369	0.228	1.022	0.727	1.103	1.009	0.161	0.184	0.194	2.125	2.821	0.662	0.467	1.190	1.012	0.139	0.280	3.773	2.701	0.188	0.265	3.018	1.325	0.293	0.298	0.627	3.837	1.506	2.594	2.328	0.988	0.031	0.041
7548	chr7	153077817	153089717	+	0	NA	Intergenic	Intergenic	25552	NR_125776	103724390	Hs.614280	NR_125776	ENSG00000234722	LINC01287	TCONS_l2_00027522	long intergenic non-protein coding RNA 1287	ncRNA	0.579	0.547	nan	0.022	2.664	1.369	1.994	0.101	0.173	0.367	0.180	0.161	0.411	0.046	0.129	0.429	0.365	0.315	0.499	1.129	1.502	8.040	1.860	0.073	0.078	0.142	0.269	0.106	0.095	0.270	0.111	0.142	0.133	0.148	0.135	0.089	0.163	1.440	0.986	0.033	0.028	0.057	0.020	1.994	0.161	0.032	0.026	0.016	0.021
480	chr1	120573401	120613337	+	0	NA	intron (NM_024408, intron 1 of 33)	intron (NM_024408, intron 1 of 33)	18948	NM_001200001	4853	Hs.487360	NM_024408	ENSG00000134250	NOTCH2	AGS2|HJCYS|hN2	notch 2	protein-coding	3.093	2.644	4.568	0.716	0.532	0.293	0.404	2.313	0.419	0.385	0.408	0.276	4.496	0.933	0.316	1.470	1.145	2.584	4.686	0.997	1.136	0.378	0.218	1.339	1.275	1.014	1.465	3.737	3.968	0.636	0.341	2.034	3.263	0.485	0.592	1.557	4.056	1.149	0.997	0.212	0.347	0.121	0.270	0.404	0.276	0.043	0.511	1.420	0.645
6169	chr5	10518206	10538856	+	0	NA	Intergenic	Intergenic	-6335	NR_134289	389273	Hs.519206	NR_134289	ENSG00000249160	LOC389273	-	uncharacterized LOC389273	ncRNA	nan	nan	nan	0.250	0.361	0.156	0.223	1.004	0.458	0.168	0.178	0.113	nan	0.073	0.088	1.246	0.754	2.553	1.809	0.565	0.638	0.285	0.094	1.398	1.327	nan	4.362	0.370	0.479	2.467	2.281	1.965	2.372	0.531	0.700	0.816	nan	0.975	0.751	0.071	0.167	0.120	0.053	0.223	0.113	0.497	0.707	2.005	1.098
107	chr1	17017776	17044859	+	0	NA	intron (NR_026567, intron 4 of 10)	intron (NR_026567, intron 4 of 10)	15335	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	dJ1182A14.1	espin pseudogene	pseudo	4.121	1.474	nan	3.229	2.202	1.104	1.201	0.066	0.095	0.359	0.244	0.835	4.072	0.311	0.228	2.628	3.762	0.901	1.416	5.337	4.606	3.475	1.122	6.165	nan	1.370	nan	3.262	4.791	nan	2.668	3.143	4.066	1.381	1.054	1.619	3.511	2.349	1.336	6.983	2.004	0.243	0.277	1.201	0.835	1.695	0.571	1.822	0.879
87	chr1	12395895	12405581	+	0	NA	intron (NM_015378, intron 40 of 69)	intron (NM_015378, intron 40 of 69)	110642	NM_018156	55187	Hs.439381	NM_015378	ENSG00000048707	VPS13D	-	vacuolar protein sorting 13 homolog D	protein-coding	1.248	0.876	nan	1.462	0.443	0.197	2.550	0.231	0.100	0.114	0.214	0.894	1.186	0.108	0.095	1.160	1.673	0.344	0.831	11.571	12.975	0.292	0.106	0.433	nan	0.978	nan	0.686	0.973	nan	0.725	0.148	0.240	1.264	0.854	0.507	0.928	1.735	1.142	0.193	0.588	0.602	0.550	2.550	0.894	0.320	0.074	0.031	0.868
2385	chr13	97860589	97880755	+	0	NA	Intergenic	AluY|SINE|Alu	-3871	NM_001306070	10150	Hs.657347	NM_144778	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding	1.690	1.901	2.246	1.143	1.551	0.882	1.910	0.857	0.129	0.590	0.311	1.588	2.485	0.408	0.097	2.001	3.554	4.628	9.601	1.343	1.775	1.022	0.582	0.309	0.269	0.392	0.550	1.689	3.851	2.092	1.968	1.903	3.516	2.285	1.995	2.481	3.702	0.701	0.442	0.260	0.965	0.402	2.689	1.910	1.588	0.465	0.738	1.996	0.886
4339	chr2	50850980	50880566	+	0	NA	intron (NM_001135659, intron 5 of 23)	intron (NM_001135659, intron 5 of 23)	57627	NR_130470	103504737		NR_130470	ENSG00000216191	MIR8485	hsa-mir-8485	microRNA 8485	ncRNA	0.919	nan	0.807	0.118	0.299	0.135	0.216	0.099	0.055	0.179	0.192	0.222	0.405	0.041	0.151	0.280	0.220	0.165	0.219	0.355	0.433	0.350	0.175	0.292	0.354	2.888	3.603	0.516	0.597	0.576	0.338	0.117	0.240	0.328	0.291	0.423	0.821	0.256	0.282	0.043	0.117	0.075	0.083	0.216	0.222	0.261	0.045	0.027	0.137
3796	chr18	47415093	47439514	+	0	NA	intron (NM_001080467, intron 21 of 39)	MIRb|SINE|MIR	86910	NR_117096	103091864	Hs.646459	NR_117096	ENSG00000267322	SNHG22	SCARNA17|SCARNA17HG	small nucleolar RNA host gene 22	ncRNA	nan	1.192	1.067	1.032	0.277	0.164	0.688	0.042	0.059	0.475	0.249	0.164	1.489	0.031	0.099	0.501	0.553	0.199	0.318	0.696	0.886	1.126	0.288	0.190	0.185	0.257	0.384	0.751	0.878	0.375	0.193	0.236	0.287	1.899	2.760	0.186	nan	3.825	2.216	2.480	0.345	0.487	0.417	0.688	0.164	0.113	0.095	0.032	0.040
221	chr1	38016701	38032710	+	0	NA	intron (NM_003462, intron 2 of 5)	intron (NM_003462, intron 2 of 5)	2185	NM_003462	7802	Hs.406050	NM_003462	ENSG00000163879	DNALI1	P28|dJ423B22.5|hp28	dynein axonemal light intermediate chain 1	protein-coding	1.566	nan	1.578	2.719	0.863	0.360	0.438	0.365	0.142	0.685	0.465	1.515	1.229	0.665	0.158	0.741	0.687	1.247	2.009	1.685	1.765	nan	0.738	1.453	1.359	0.848	1.434	9.888	10.460	nan	0.944	1.030	1.610	0.587	0.571	1.056	1.934	1.496	nan	0.310	0.638	0.042	0.387	0.438	1.515	0.195	0.439	0.274	0.392
3147	chr16	56223036	56229774	+	0	NA	TTS (NR_026889)	TTS (NR_026889)	1154	NM_020988	2775	Hs.644524	NM_020988	ENSG00000087258	GNAO1	EIEE17|G-ALPHA-o|GNAO|HLA-DQB1	G protein subunit alpha o1	protein-coding	nan	nan	nan	3.364	5.842	2.701	5.282	0.155	0.147	1.235	0.599	6.796	7.259	0.145	0.058	1.285	1.955	0.069	0.036	5.187	4.514	2.629	0.763	0.223	0.230	2.034	nan	nan	nan	nan	5.831	1.109	1.986	1.908	1.416	2.386	nan	nan	1.395	1.387	2.679	0.520	2.247	5.282	6.796	1.896	2.895	1.516	0.697
4486	chr2	122405458	122409406	+	0	NA	promoter-TSS (NM_001207051)	promoter-TSS (NM_001207051)	-133	NR_037856	254128	Hs.712685	NR_037856	ENSG00000236859	NIFK-AS1	-	NIFK antisense RNA 1	ncRNA	6.719	nan	nan	6.996	6.060	3.291	4.307	3.502	0.573	2.490	1.828	5.332	13.808	3.921	0.124	6.335	7.848	7.513	9.204	8.232	6.713	11.301	4.546	21.710	24.502	5.816	7.252	8.991	14.460	12.256	11.527	3.685	7.768	3.949	3.679	9.362	11.110	2.977	1.570	4.125	3.696	1.030	4.213	4.307	5.332	1.937	4.297	4.147	4.039
417	chr1	99919223	99947721	+	0	NA	Intergenic	Intergenic	19888	NR_125951	101928270	Hs.576048	NR_125951	ENSG00000224445	LINC01708	-	long intergenic non-protein coding RNA 1708	ncRNA	nan	nan	1.370	0.055	0.175	0.156	0.166	0.213	0.130	0.083	0.072	0.226	0.296	0.080	0.094	0.361	0.193	0.442	0.659	0.564	nan	0.148	0.075	0.254	0.269	0.794	nan	0.333	0.359	nan	1.359	0.134	0.210	0.038	0.051	1.570	6.695	0.650	0.625	0.046	0.083	0.010	0.031	0.166	0.226	0.034	0.058	0.031	4.655
7172	chr7	14786562	14802880	+	0	NA	intron (NM_145695, intron 2 of 23)	intron (NM_145695, intron 2 of 23)	86354	NM_145695	1607	Hs.567255	NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding	nan	1.996	nan	0.746	0.889	0.569	0.954	0.270	0.138	0.715	0.618	1.484	1.188	0.045	0.179	nan	0.322	0.310	0.417	1.274	1.313	4.164	1.029	0.523	0.414	2.344	2.823	1.625	2.540	0.618	0.516	0.116	0.180	2.581	4.560	0.413	0.871	0.960	0.577	0.088	0.459	0.498	0.286	0.954	1.484	0.129	0.978	0.018	0.038
5772	chr3	191012037	191020915	+	0	NA	intron (NM_198152, intron 4 of 8)	MSTA-int|LTR|ERVL-MaLR	-30398	NM_178335	152137	Hs.478682	NM_174908	ENSG00000152492	CCDC50	C3orf6|DFNA44|YMER	coiled-coil domain containing 50	protein-coding	nan	0.922	0.705	0.184	0.475	0.221	0.174	0.216	0.127	0.227	0.231	0.013	nan	0.099	0.063	1.647	1.023	12.466	3.650	0.363	0.344	0.461	0.141	0.463	0.479	0.196	0.236	0.376	0.599	0.628	0.296	0.958	1.457	0.161	0.218	0.271	0.389	0.524	0.685	0.031	0.111	0.053	0.601	0.174	0.013	0.011	0.046	0.749	0.056
7056	chr6	154885831	154900559	+	0	NA	Intergenic	AluSz|SINE|Alu	-61442	NM_173515	154043	Hs.16064	NM_173515	ENSG00000153721	CNKSR3	MAGI1	CNKSR family member 3	protein-coding	nan	0.865	0.751	3.025	0.716	0.379	0.201	0.112	0.077	0.801	0.366	0.390	0.912	0.044	0.133	0.354	0.244	0.329	0.514	0.428	nan	2.108	1.389	0.268	0.299	0.090	0.198	7.878	8.917	0.614	0.355	0.118	0.188	0.464	1.040	0.283	nan	1.033	0.602	0.112	0.181	0.104	0.064	0.201	0.390		1.520	0.047	0.058
4547	chr2	151443016	151471157	+	0	NA	Intergenic	Intergenic	-28325	NR_110246	101929282	Hs.126866	NR_110244	ENSG00000224048	LOC101929282	-	uncharacterized LOC101929282	ncRNA	nan	0.535	nan	0.168	0.257	0.154	0.305	1.314	0.166	0.084	0.131	0.102	0.545	2.739	0.140	0.365	0.225	0.267	0.411	0.394	0.401	0.427	0.073	0.206	0.206	0.286	0.560	0.206	0.257	0.514	0.359	0.175	0.269	0.168	0.173	0.204	0.488	0.387	0.390	0.060	0.082	0.027	0.082	0.305	0.102	0.212	0.034	0.085	0.074
1530	chr11	76077700	76084568	+	0	NA	intron (NR_130898, intron 1 of 5)	L1ME3|LINE|L1	10875	NM_004705	5612	Hs.503315	NM_004705	ENSG00000137492	THAP12	DAP4|P52rIPK|PRKRIR|THAP0	THAP domain containing 12	protein-coding	nan	0.869	2.418	1.650	0.393	0.280	0.296	0.186	0.118	0.365	0.283	2.076	0.599	0.095	0.128	0.678	0.845	0.314	0.469	1.020	1.113	1.146	0.316	2.185	2.425	1.083	1.428	4.694	4.950	0.509	0.386	0.462	0.914	0.462	0.593	0.394	1.273	1.724	1.094	0.209	0.360	0.033	0.279	0.296	2.076	0.071	4.184	0.470	0.090
5246	chr22	34458420	34474726	+	0	NA	Intergenic	MER46C|DNA|TcMar-Tigger	-150157	NM_133642	9215	Hs.474667	NM_004737	ENSG00000133424	LARGE1	LARGE|MDC1D|MDDGA6|MDDGB6	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	nan	0.572	1.008	0.049	0.207	0.089	0.127	0.051	0.050	0.019	0.061	0.066	0.218	0.007	0.061	0.273	0.158	0.131	nan	0.217	0.256	0.077	0.040	0.051	0.058	0.151	nan	0.203	0.293	1.420	1.562	0.146	0.143	0.031	0.058	1.151	5.631	0.259	0.291	0.007	0.062	0.012	0.030	0.127	0.066	0.030	0.081	0.051	2.585
2504	chr14	26783091	26798681	+	0	NA	Intergenic	Intergenic	276074	NM_006491	4857	Hs.31588	NM_002515	ENSG00000139910	NOVA1	Nova-1	NOVA alternative splicing regulator 1	protein-coding	nan	0.746	0.915	5.390	0.258	0.216	0.179	0.162	0.061	0.684	0.185	0.390	3.702	0.056	0.137	0.218	0.145	0.190	0.196	0.683	0.884	4.823	1.194	0.193	0.212	0.806	1.110	2.374	nan	0.637	0.229	0.132	0.217	0.344	0.421	0.096	0.184	2.344	1.019	0.183	0.164	0.043	0.204	0.179	0.390	0.013	0.494	0.031	0.031
6980	chr6	134938332	135015546	+	0	NA	Intergenic	Intergenic	-115796	NR_125855	101928304	Hs.555076	NR_125855		LOC101928304	-	uncharacterized LOC101928304	ncRNA	0.825	1.057	0.962	0.151	0.340	0.154	1.161	0.154	0.108	0.075	0.083	0.135	0.414	6.358	0.271	0.408	0.304	0.372	0.632	0.391	0.470	nan	0.822	0.251	0.273	0.284	0.481	0.307	0.321	0.568	0.245	0.157	0.206	0.149	0.290	0.552	nan	0.364	0.309	0.168	0.079	0.026	0.050	1.161	0.135	0.068	0.266	0.046	0.253
5912	chr4	56495810	56504686	+	0	NA	intron (NR_120489, intron 1 of 8)	intron (NR_120489, intron 1 of 8)	2217	NM_001292045	10874	Hs.418367	NM_006681	ENSG00000109255	NMU	-	neuromedin U	protein-coding	nan	0.757	0.806	0.849	0.564	0.327	0.848	0.440	0.127	0.420	0.326	1.349	2.862	0.208	0.110	6.252	6.613	3.962	2.023	2.063	1.600	0.509	0.177	17.677	17.640	0.393	0.752	0.649	0.763	1.321	1.154	4.339	8.234	0.470	0.314	0.216	0.355	2.202	1.654	0.550	0.079	0.075	0.080	0.848	1.349	0.343	0.570	8.096	0.070
2952	chr15	74592023	74615434	+	0	NA	intron (NM_025055, intron 11 of 18)	intron (NM_025055, intron 11 of 18)	-7154	NM_182791	80125	Hs.383206	NM_025055	ENSG00000140481	CCDC33	CT61|HP11097	coiled-coil domain containing 33	protein-coding	1.373	2.510	1.491	0.812	5.769	2.785	1.832	0.658	0.096	2.386	1.367	7.448	11.547	0.070	0.047	0.598	0.921	0.182	0.297	4.402	5.479	2.486	0.805	0.126	0.099	2.618	2.944	4.587	6.148	2.034	1.731	0.443	0.540	2.669	1.846	1.637	3.369	2.383	1.243	2.754	4.115	1.162	2.010	1.832	7.448	0.608	1.064	0.107	1.224
8285	chr9	130715129	130754642	+	0	NA	intron (NM_001035254, intron 1 of 10)	MIRb|SINE|MIR	7927	NM_001035254	399665	Hs.535972	NM_203305	ENSG00000167106	FAM102A	C9orf132|EEIG1|SYM-3A|bA203J24.7	family with sequence similarity 102 member A	protein-coding	nan	3.253	2.235	4.666	5.451	2.737	1.936	0.783	0.187	3.420	1.345	3.882	9.560	0.384	0.077	1.074	1.860	1.401	1.910	5.061	4.966	nan	1.298	2.793	2.967	0.686	0.976	5.030	6.246	1.373	1.254	1.168	1.798	3.659	3.940	0.536	0.970	2.212	1.192	5.155	3.310	1.093	0.928	1.936	3.882	1.137	2.507	0.882	0.179
3724	chr18	31732106	31741575	+	0	NA	intron (NM_001198546, intron 1 of 9)	L2a|LINE|L2	65594	NM_001198547	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding	nan	1.096	0.880	4.467	1.696	0.795	2.648	0.133		2.207	1.130	6.651	5.006	0.391	0.050	0.333	0.236	0.308	0.370	8.607	8.955	7.286	3.903	0.180	0.202	0.699	0.991	nan	8.133	2.658	2.470	0.413	0.713	6.844	9.741	0.332	0.805	3.361	2.458	2.354	1.165	2.317	0.244	2.648	6.651	0.278	2.162	0.314	0.119
1440	chr11	61446884	61501865	+	0	NA	intron (NM_006133, intron 1 of 19)	intron (NM_006133, intron 1 of 19)	26469	NM_006133	747	Hs.241564	NM_006133	ENSG00000134780	DAGLA	C11orf11|DAGL(ALPHA)|DAGLALPHA|NSDDR	diacylglycerol lipase alpha	protein-coding	nan	1.894	2.761	1.568	2.028	1.019	0.866	0.167	0.067	0.959	0.745	2.555	4.030	0.212	0.100	0.768	1.315	0.404	0.797	7.065	7.615	2.164	0.562	0.586	0.662	1.799	2.558	3.626	3.448	0.983	1.063	0.693	0.842	1.997	1.922	0.610	1.096	1.600	0.912	1.795	1.691	0.744	1.113	0.866	2.555	0.674	0.373	0.129	0.359
381	chr1	82254225	82304846	+	0	NA	intron (NM_001330645, intron 1 of 20)	intron (NM_001330645, intron 1 of 20)	13453	NM_012302	23266	Hs.24212	NM_012302	ENSG00000117114	ADGRL2	CIRL2|CL2|LEC1|LPHH1|LPHN2	adhesion G protein-coupled receptor L2	protein-coding	1.513	nan	nan	0.268	0.690	0.302	0.238	1.362	0.169	0.426	0.338	0.198	1.745	2.888	0.134	0.382	0.312	0.308	0.467	1.440	1.152	0.575	0.189	0.469	0.485	2.238	2.910	0.815	1.089	0.917	0.791	0.187	0.353	0.049	0.067	0.543	0.804	0.590	0.404	0.229	0.156	0.008	0.429	0.238	0.198	0.129	0.414	0.047	0.247
5020	chr20	57635563	57642225	+	0	NA	Intergenic	Intergenic	-20993	NM_016045	51012	Hs.656865	NM_016045	ENSG00000101166	PRELID3B	C20orf45|SLMO2|dJ543J19.5	PRELI domain containing 3B	protein-coding	1.269	1.388	0.800	0.145	0.565	0.123	0.331	0.121	0.141	0.332	0.294	0.215	0.654	3.977	0.195	0.576	nan	0.126	0.129	0.471	0.557	6.404	1.296	0.197	0.132	0.772	1.115	0.134	0.202	2.430	2.327	0.203	0.199	6.008	7.967	0.364	0.626	3.568	1.325	0.110	0.176	1.879	0.024	0.331	0.215	0.250	4.005	0.050	0.036
1814	chr12	8228971	8236862	+	0	NA	Intergenic	L2c|LINE|L2	-1891	NR_024260	25977	Hs.555927	NM_015509	ENSG00000089818	NECAP1	EIEE21	NECAP endocytosis associated 1	protein-coding	2.791	nan	nan	4.520	2.070	0.849	2.120	0.483	0.082	1.403	0.829	2.135	4.135	1.552	0.158	1.658	1.809	2.923	3.894	nan	5.692	9.122	3.452	6.940	7.413	1.831	2.346	2.134	3.190	4.305	4.008	2.284	4.096	2.951	3.005	2.942	nan	1.870	1.109	1.659	1.779	0.337	1.745	2.120	2.135	5.222	0.669	1.735	0.978
5896	chr4	53699761	53709671	+	0	NA	Intergenic	Intergenic	-23779	NM_023940	65997	Hs.8035	NM_023940	ENSG00000128045	RASL11B	-	RAS like family 11 member B	protein-coding	nan	0.524	0.734	0.141	0.303	0.064	0.466	1.253	0.147	0.133	0.108	0.084	0.383	0.025	0.053	0.442	0.275	0.803	3.081	0.237	0.214	0.654	0.269	0.275	0.254	4.921	5.334	1.178	1.079	0.508	0.376	0.263	0.471	0.117	0.087	0.126	0.153	1.609	1.487	0.648	0.098	0.010	0.091	0.466	0.084	0.423	0.258	0.180	0.061
7715	chr8	63458453	63467471	+	0	NA	intron (NR_130764, intron 1 of 6)	intron (NR_130764, intron 1 of 6)	301461	NM_001304533	286183	Hs.654662	NM_173688	ENSG00000185942	NKAIN3	FAM77D	Sodium/potassium transporting ATPase interacting 3	protein-coding	0.958	0.705	2.739	0.128	0.312	0.071	2.179	0.077	0.141	0.782	0.591	0.013	2.971		0.108	0.268	0.161	0.252	0.283	4.046	4.342	2.283	0.876	0.047	0.075	3.682	4.090	0.080	0.108	nan	0.508	0.070	0.182	4.012	3.626	0.239	0.237	3.109	1.796	0.320	0.068	1.506	0.018	2.179	0.013	4.114	0.056	0.077	0.057
2966	chr15	78498313	78509238	+	0	NA	intron (NM_015162, intron 1 of 13)	intron (NM_015162, intron 1 of 13)	23274	NM_001199377	23205	Hs.655760	NM_015162	ENSG00000103740	ACSBG1	BG|BG1|BGM|GR-LACS|LPD	acyl-CoA synthetase bubblegum family member 1	protein-coding	1.451	5.882	1.030	0.581	0.360	0.160	0.478	0.455	0.103	0.271	0.155	0.120	3.968	0.090	0.076	0.455	0.329	0.435	0.586	0.380	0.322	4.006	1.300	0.239	0.246	0.434	0.716	0.620	0.651	0.885	0.748	0.341	0.431	1.227	1.600	0.393	0.375	0.514	0.407	0.014	0.252	0.236	0.332	0.478	0.120	0.341	0.399	0.018	0.211
5694	chr3	177047513	177081347	+	0	NA	Intergenic	Intergenic	52200	NR_047465	100820709	Hs.518409	NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA	2.203	2.203	1.658	1.967	3.152	1.736	1.403	2.095	0.330	1.121	0.507	0.824	1.307	0.733	0.137	0.511	0.685	1.829	5.695	0.866	0.891	2.569	1.055	1.125	1.148	1.692	1.956	2.079	1.775	1.773	1.488	0.483	0.785	1.393	1.986	1.171	3.635	1.268	0.818	0.888	0.605	0.377	0.989	1.403	0.824	0.271	1.111	0.647	0.883
7424	chr7	106584249	106607437	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-89335	NM_002736	5577	Hs.433068	NM_002736	ENSG00000005249	PRKAR2B	PRKAR2|RII-BETA	protein kinase cAMP-dependent type II regulatory subunit beta	protein-coding	nan	0.576	0.649	0.114	0.296	0.117	0.520	0.110	0.069	0.081	0.150	0.133	0.301	0.066	0.134	0.539	0.303	0.257	0.337	0.416	0.442	3.452	1.184	0.216	0.198	0.373	0.547	0.143	0.224	0.325	0.184	0.233	0.300	0.080	0.076	0.173	nan	1.054	0.901	0.041	0.168	0.004	0.075	0.520	0.133	0.013	0.045	0.034	0.032
4330	chr2	48420961	48444303	+	0	NA	Intergenic	Intergenic	-109163	NM_002158	3344	Hs.468478	NM_002158	ENSG00000170802	FOXN2	HTLF	forkhead box N2	protein-coding	1.426	nan	1.596	0.150	0.342	0.124	0.231	0.137	0.041	0.155	0.189	0.148	0.400	0.042	0.129	0.850	1.498	0.947	0.721	nan	0.679	2.009	0.608	0.381	0.474	1.611	1.783	0.339	0.445	2.085	1.774	0.217	0.281	0.458	0.415	1.508	nan	nan	0.558	0.045	0.118	0.113	0.140	0.231	0.148	0.494	0.018	0.051	1.080
5385	chr3	60275366	60278465	+	0	NA	intron (NM_002012, intron 5 of 9)	LTR9|LTR|ERV1	-210062	NR_135491	2272	Hs.655995	NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding	0.932	nan	1.364	0.395	0.195	0.206	0.125	0.192		0.199	0.080	1.503	0.227	0.107	0.088	5.651	5.954	13.523	5.035	0.297	0.334	6.064	1.533	15.436	16.938	0.621	0.902	0.340	0.235	0.378	0.148	4.448	9.528	0.192	0.129	0.202	nan	0.392	0.275	0.071	0.030	0.060	0.205	0.125	1.503	0.126	0.027	6.648	0.082
773	chr1	201343253	201361776	+	0	NA	exon (NM_005558, exon 6 of 10)	exon (NM_005558, exon 6 of 10)	-5686	NM_001001432	7139	Hs.533613	NM_000364	ENSG00000118194	TNNT2	CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT	troponin T2, cardiac type	protein-coding	1.249	1.607	1.124	0.556	0.720	0.400	0.383	0.085	0.104	0.220	0.165	3.790	2.065	0.083	0.103	0.578	0.697	0.583	0.842	2.570	2.190	1.015	0.336	nan	nan	0.401	0.800	2.320	2.378	1.387	1.600	0.211	0.259	0.196	0.193	0.991	2.604	0.519	0.601	0.451	2.554	0.035	0.699	0.383	3.790	0.451	0.102	0.032	1.455
1247	chr10	125975737	125982366	+	0	NA	Intergenic	MIRb|SINE|MIR	-125928	NM_001270765	51363	Hs.287537	NM_014863	ENSG00000182022	CHST15	BRAG|GALNAC4S-6ST	carbohydrate sulfotransferase 15	protein-coding	nan	0.426	1.092	0.198	0.635	0.194	0.156	0.109		0.118	0.075	0.234	1.258	0.048	0.065	0.294	0.438	0.186	0.232	0.281	0.207	0.779	0.164	0.125	0.161	0.055	0.193	0.650	0.732	0.332	0.251	0.310	0.170	0.057	0.153	0.079	0.108	1.066	0.601	0.083	0.067		0.012	0.156	0.234	0.059	4.327	0.030	0.038
1576	chr11	92701777	92715937	+	0	NA	intron (NM_005959, intron 1 of 1)	intron (NM_005959, intron 1 of 1)	6068	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding	0.734	nan	0.688	0.801	0.795	0.510	1.003	0.084	0.034	0.411	0.158	1.384	3.975	0.046	0.116	0.994	1.531	0.416	nan	3.492	3.295	0.524	0.104	0.627	0.662	1.366	1.902	1.712	1.227	0.596	0.452	0.313	0.563	1.672	1.420	0.224	nan	2.427	1.106	7.509	0.628	0.396	0.419	1.003	1.384	0.007	0.726	0.118	0.209
3448	chr17	48500832	48504883	+	0	NA	promoter-TSS (NM_001288968)	promoter-TSS (NM_001288968)	-662	NM_001288968	80221	Hs.288959	NM_025149	ENSG00000167107	ACSF2	ACSMW|AVYV493	acyl-CoA synthetase family member 2	protein-coding	3.114	1.309	nan	0.954	1.290	0.420	0.658	2.323	0.362	0.192	0.158	0.297	1.092	2.188	0.085	0.389	0.713	2.032	2.781	0.970	nan	2.733	0.735	2.036	2.459	1.678	1.949	4.448	5.577	5.413	5.660	0.711	0.813	0.331	0.372	0.508	0.925	0.481	0.443	1.440	0.273	0.071	0.787	0.658	0.297	3.914	0.148	0.385	0.582
7133	chr7	3444117	3456989	+	0	NA	intron (NM_152744, intron 1 of 44)	intron (NM_152744, intron 1 of 44)	109473	NM_152744	221935	Hs.653013	NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding	1.435	1.766	2.334	0.216	0.600	0.299	0.633	0.083	0.089	0.686	0.402	0.786	nan	0.128	0.189	1.167	1.478	0.460	nan	0.875	1.015	nan	0.557	0.351	0.338	0.744	0.876	nan	0.748	0.415	0.356	0.449	0.636	4.140	5.269	0.178	0.188	1.384	0.997	0.133	0.390	0.760	0.239	0.633	0.786	0.410	0.032	0.308	0.078
6136	chr5	1864919	1887653	+	0	NA	Intergenic	CpG	6594	NM_016358	50805	Hs.196927	NM_016358	ENSG00000113430	IRX4	IRXA3	iroquois homeobox 4	protein-coding	0.293	0.437	0.610	0.168	0.334	0.154	0.950	0.118	0.098	0.096	0.105	0.321	0.589	0.043	0.076	0.237	0.136	1.428	nan	2.890	1.926	0.387	0.099	0.051	0.046	0.144	0.254	nan	0.113	nan	0.390	0.104	0.115	0.088	0.116	0.052	0.068	0.453	nan	4.134	0.321	0.021	0.042	0.950	0.321	0.381	0.094	0.013	0.016
5091	chr21	32923049	32933111	+	0	NA	intron (NM_003253, intron 1 of 28)	intron (NM_003253, intron 1 of 28)	3210	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding	3.356	2.591	3.073	1.573	2.952	1.590	3.130	0.052	0.080	0.699	0.428	2.402	8.490	0.738	0.086	3.424	3.413	1.757	2.852	4.819	3.959	2.782	1.218	3.575	3.760	2.647	3.883	3.294	4.963	3.061	3.834	1.288	2.612	4.319	3.470	2.792	2.619	nan	1.610	2.264	1.882	0.975	1.037	3.130	2.402	0.426	0.432	0.507	0.548
7441	chr7	114283499	114304076	+	0	NA	TTS (NR_037439)	TTS (NR_037439)	387	NR_037439	100500896		NR_037439	ENSG00000272230	MIR3666	-	microRNA 3666	ncRNA	nan	0.729	1.096	0.427	0.948	0.627	0.298	0.212	0.079	0.838	0.619	3.168	2.522	0.100	0.147	0.504	0.312	0.479	0.368	1.724	1.741	5.234	3.204	0.264	0.237	2.023	2.216	1.279	2.022	0.711	0.366	0.185	0.302	1.180	2.339	0.594	1.103	0.921	0.698	3.643	5.532	0.362	0.147	0.298	3.168	0.260	0.265	0.058	0.234
6776	chr6	43800856	43897204	+	0	NA	Intergenic	Intergenic	-9735	NR_024478	100132354	Hs.376232	NR_024478		LINC01512	HI-LNC77	long intergenic non-protein coding RNA 1512	ncRNA	1.340	1.239	1.132	0.366	1.534	0.798	0.928	0.669	0.124	0.415	0.192	0.915	1.037	0.101	0.095	0.879	1.233	0.311	0.561	1.235	1.221	2.738	1.078	0.857	0.893	0.263	0.476	1.373	nan	1.556	1.453	1.373	1.311	0.476	0.574	0.877	3.119	1.704	0.955	1.760	1.021	0.103	0.446	0.928	0.915	0.324	0.109	0.474	0.625
6064	chr4	166153596	166163527	+	0	NA	intron (NM_001331024, intron 3 of 13)	intron (NM_001331024, intron 3 of 13)	27390	NM_001161522	11275	Hs.388668	NM_007246	ENSG00000109466	KLHL2	ABP-KELCH|MAV|MAYVEN	kelch like family member 2	protein-coding	nan	3.511	nan	1.754	1.012	0.546	0.169	0.405	0.067	0.664	0.398	2.082	1.655	0.054	0.094	1.985	2.020	6.811	4.042	2.509	2.900	4.641	1.553	0.239	0.168	1.409	2.031	1.100	1.310	3.121	2.286	2.577	4.245	3.538	5.647	0.318	0.577	2.424	1.274	0.976	0.144	1.552	0.562	0.169	2.082	0.886	1.194	7.223	0.151
6255	chr5	50665802	50696682	+	0	NA	intron (NM_002202, intron 2 of 5)	intron (NM_002202, intron 2 of 5)	-2076	NR_046243	642366	Hs.544139	NR_046243		LOC642366	-	uncharacterized LOC642366	ncRNA	nan	nan	0.640	0.800	2.945	1.577	1.765	0.068	0.052	1.797	1.185	4.714	3.747	0.669	0.123	0.133	0.093	6.087	6.879	20.274	19.857	nan	0.704	0.057	0.041	0.163	0.239	0.434	0.673	nan	1.940	0.055	0.071	6.979	5.346	0.195	0.315	1.677	1.031	3.917	4.556	2.144	1.242	1.765	4.714	0.136	0.128	0.013	0.087
7162	chr7	12423640	12444828	+	0	NA	intron (NM_001346973, intron 1 of 26)	intron (NM_001346973, intron 1 of 26)	9333	NM_001135924	221806	Hs.669526	NM_001135924	ENSG00000146530	VWDE	-	von Willebrand factor D and EGF domains	protein-coding	nan	1.481	nan	0.751	3.170	1.619	0.422	0.132	0.084	1.694	1.192	1.416	2.934	0.172	0.125	nan	1.545	0.932	1.295	2.772	2.674	4.289	1.502	4.213	3.911	1.277	1.663	2.390	2.622	1.330	0.987	1.154	2.645	1.850	1.912	0.248	0.436	1.922	0.931	0.029	2.926	0.368	0.492	0.422	1.416	0.155	1.493	0.942	0.098
6250	chr5	45505080	45511430	+	0	NA	intron (NM_021072, intron 2 of 7)	intron (NM_021072, intron 2 of 7)	187965	NM_021072	348980	Hs.353176	NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding	0.704	1.013	1.552	0.098	0.174	0.126	0.492	0.131	0.102	1.144	0.595	6.381	0.323		0.156	0.517	0.590	0.210	0.211	1.093	1.334	2.717	1.014	0.131	0.149	2.791	4.401	0.327	0.255	2.620	1.789	0.176	0.198	0.032	0.081	0.282	0.357	0.172	0.200		0.043	0.030		0.492	6.381	0.393	0.048	0.077	0.078
5271	chr22	39744923	39762363	+	0	NA	intron (NM_145731, intron 1 of 3)	LTR12C|LTR|ERV1	-6532	NM_145738	9145	Hs.216226	NM_004711	ENSG00000100321	SYNGR1	-	synaptogyrin 1	protein-coding	2.352	nan	2.722	0.201	0.776	0.415	0.817	0.160	0.037	0.120	0.172	1.006	1.144	0.601	0.123	0.677	1.244	0.924	1.490	1.225	1.116	0.839	0.345	0.446	0.451	1.577	nan	1.015	1.517	nan	4.336	0.462	0.784	0.585	0.596	2.586	5.787	0.620	0.463	0.345	0.218	0.136	0.487	0.817	1.006	1.568	0.682	0.159	2.192
8395	chrX	75364139	75370634	+	0	NA	Intergenic	PABL_B|LTR|ERV1	-25378	NM_001300888	51260	Hs.370100	NM_016500	ENSG00000102390	PBDC1	CXorf26	polysaccharide biosynthesis domain containing 1	protein-coding	4.108	4.357	nan	3.912	5.860	2.642	2.497	2.172	0.124	1.433	1.184	2.590	10.267	4.147	0.115	4.190	4.930	5.200	7.619	10.382	10.853	5.818	6.209	6.789	7.380	4.747	5.048	5.896	7.802	9.383	8.754	4.984	5.821	3.283	3.325	4.553	6.370	2.666	1.371	3.061	2.153	0.585	1.898	2.497	2.590	0.895	1.585	1.954	2.127
1911	chr12	32283684	32335394	+	0	NA	intron (NM_001003398, intron 1 of 8)	intron (NM_001003398, intron 1 of 8)	49354	NM_001714	636	Hs.505202	NM_001714	ENSG00000151746	BICD1	BICD	BICD cargo adaptor 1	protein-coding	1.723	nan	1.917	0.256	0.414	0.198	0.399	0.084	0.053	0.166	0.149	0.535	0.399	0.126	0.137	0.484	0.416	0.272	0.464	0.809	0.901	0.602	0.254	0.549	0.552	3.686	3.958	0.315	0.319	2.589	2.118	0.228	0.318	1.191	1.428	1.796	4.775	0.641	0.530	0.069	0.264	0.230	0.937	0.399	0.535	0.621	0.065	0.137	1.408
6021	chr4	134067801	134075631	+	0	NA	exon (NM_032961, exon 1 of 5)	exon (NM_032961, exon 1 of 5)	1271	NM_032961	57575	Hs.192859	NM_020815	ENSG00000138650	PCDH10	OL-PCDH|PCDH19	protocadherin 10	protein-coding	nan	nan	0.439	0.409	0.251	0.062	1.317	2.205	0.124	0.261	0.211	2.501	11.925	0.142	0.067	1.728	0.855	0.624	0.473	0.781	0.666	0.142	0.076	2.093	2.232	0.294	0.511	0.912	1.487	1.550	2.430	0.181	0.236	0.365	0.222	0.616	nan	0.149	0.181	0.969	0.045	0.012	0.132	1.317	2.501	0.113	0.816	0.077	0.236
2856	chr15	42382489	42388670	+	0	NA	intron (NM_178034, intron 1 of 19)	intron (NM_178034, intron 1 of 19)	1173	NM_178034	283748	Hs.380225	NM_178034	ENSG00000159337	PLA2G4D	cPLA2delta	phospholipase A2 group IVD	protein-coding	0.803	0.656	nan	1.266	1.237	0.649	0.394	0.158	0.053	0.325	0.184	0.450	1.746	0.053	0.107	0.284	0.616	7.932	5.092	1.122	1.440	1.803	0.676	0.427	0.383	0.157	nan	1.768	1.697	0.691	0.438	0.249	0.299	0.121	0.075	0.419	0.534	1.464	0.704	2.211	1.146	0.030	0.232	0.394	0.450	0.663	0.083	0.043	0.119
2199	chr12	125065074	125075262	+	0	NA	Intergenic	L1ME3A|LINE|L1	-18158	NM_001206654	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding	1.027	1.324	1.086	0.353	2.040	0.851	0.551	0.168	0.095	0.661	0.471	7.928	1.672	0.042	0.072	0.425	0.380	0.253	0.290	2.981	3.910	nan	0.840	0.585	0.673	0.969	1.307	4.089	4.829	0.628	0.325	0.225	0.377	0.497	0.511	0.365	0.802	1.764	0.983	1.048	3.948	0.102	0.141	0.551	7.928	0.270	0.325	0.030	0.206
7667	chr8	49605587	49622450	+	0	NA	Intergenic	Intergenic	33852	NM_001142857	79645	Hs.23245	NM_024593	ENSG00000034239	EFCAB1	-	EF-hand calcium binding domain 1	protein-coding	1.533	nan	1.412	0.062	0.749	0.296	0.456	0.112	0.114	0.630	0.478	0.230	2.479	0.039	0.108	0.592	1.045	0.290	0.695	3.757	2.963	4.900	1.095	0.319	0.332	0.330	0.607	0.074	0.121	0.399	0.272	0.291	0.517	2.595	2.095	0.268	0.328	3.157	1.573	0.077	0.128	0.639	0.104	0.456	0.230	0.214	1.920	0.123	0.109
8358	chrUn_gl000219	98147	102179	+	0	NA	promoter-TSS (NR_132316).2	promoter-TSS (NR_132316).2	-521	NR_027436	283788	Hs.657131	NR_027436		LOC283788	-	FSHD region gene 1 pseudogene	pseudo	2.669	2.661	nan	2.808	4.465	2.208	2.478	1.523	0.360	2.293	1.286	3.611	9.023	1.778	0.177	3.126	4.119	1.896	2.950	2.787	2.986	5.595	2.424	2.804	2.646	5.736	7.250	5.061	6.830	6.732	4.945	2.655	3.980	3.331	2.821	2.961	3.432	7.659	4.965	1.325	4.463	0.803	1.286	2.478	3.611	0.507	7.999	0.841	1.339
5004	chr20	52440555	52456805	+	0	NA	Intergenic	Intergenic	43568	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo	1.066	1.983	0.757	0.228	0.424	0.197	1.508	4.723	0.482	0.087	0.082	0.052	0.451	7.227	0.230	0.483	nan	1.102	5.002	0.594	0.578	0.136	0.065	0.279	0.231	0.789	1.203	0.622	0.754	0.599	0.285	0.182	0.402	0.046	0.056	0.431	1.080	0.249	0.337	0.438	0.219	0.006	0.083	1.508	0.052	0.347	0.043	0.146	0.177
6585	chr6	3220590	3237286	+	0	NA	promoter-TSS (NM_178012)	promoter-TSS (NM_178012)	-970	NM_178012	347733	Hs.300701	NM_178012	ENSG00000137285	TUBB2B	PMGYSA|bA506K6.1	tubulin beta 2B class IIb	protein-coding	5.718	3.207	0.978	4.073	5.537	2.768	4.945	0.408	0.144	2.788	1.542	6.520	5.113	1.584	0.121	7.736	9.533	11.562	11.149	10.929	7.308	8.230	2.723	12.168	12.416	1.996	2.656	3.331	5.335	3.474	4.227	2.954	4.917	7.014	5.137	1.614	2.302	4.250	2.568	3.184	6.116	1.550	2.323	4.945	6.520	1.584	2.087	2.556	0.726
6352	chr5	87867113	87876225	+	0	NA	intron (NR_015436, intron 3 of 4)	intron (NR_015436, intron 3 of 4)	91088	NR_030741	407047		NR_030741	ENSG00000245526	MIR9-2	MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2	microRNA 9-2	ncRNA	0.872	1.207	0.684	0.038	0.212	0.093	0.085	0.121	0.018	0.070	0.081	0.013	0.194	0.024	0.133	0.144	0.141	0.496	0.273	0.143	0.234	0.104	0.071	0.162	0.146	0.456	0.621	0.193	0.176	0.405	0.165	0.131	0.161	4.651	7.877	0.175	nan	0.732	0.484	0.018	0.049	1.871	0.018	0.085	0.013		0.022	0.032	0.110
3002	chr15	96864329	96907900	+	0	NA	Intergenic	Intergenic	9545	NM_001145157	7026	Hs.347991	NM_021005	ENSG00000185551	NR2F2	ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2	nuclear receptor subfamily 2 group F member 2	protein-coding	nan	nan	nan	0.568	0.801	0.395	1.250	1.058	0.133	0.953	0.720	2.326	2.704	1.151	0.071	1.412	1.556	5.140	6.193	2.190	1.973	nan	0.067	1.538	1.585	1.312	1.793	0.877	1.076	nan	2.822	1.307	2.710	0.517	0.403	1.302	nan	1.049	0.657	0.329	1.512	0.138	1.104	1.250	2.326	0.197	0.399	0.739	0.236
6710	chr6	32142810	32147459	+	0	NA	intron (NM_032741, intron 1 of 6).3	intron (NM_032741, intron 1 of 6).3	754	NM_032741	10554	Hs.409230	NM_006411	ENSG00000204310	AGPAT1	1-AGPAT1|G15|LPAAT-alpha|LPAATA	1-acylglycerol-3-phosphate O-acyltransferase 1	protein-coding	nan	3.715	nan	8.840	4.645	2.820	9.355	4.599	0.314	2.721	1.224	9.001	17.423	6.106	0.254	6.489	8.679	6.202	nan	13.758	11.786	11.926	4.924	14.151	14.378	6.112	6.708	13.785	17.962	10.025	7.315	3.180	5.381	8.682	8.159	6.672	12.843	4.750	2.131	7.156	5.448	1.521	3.813	9.355	9.001	2.567	4.146	3.685	3.547
8415	chrX	137064152	137089259	+	0	NA	Intergenic	Intergenic	428359	NM_003413	7547	Hs.111227	NM_003413	ENSG00000156925	ZIC3	HTX|HTX1|VACTERLX|ZNF203	Zic family member 3	protein-coding	0.439	0.659	0.823	0.046	0.269	0.121	0.465	0.053	0.045	0.122	0.114	0.024	0.158	0.017	0.037	0.309	0.400	0.406	0.312	0.155	0.158	3.183	1.031	0.211	0.187	0.106	0.153	0.103	0.112	0.277	0.107	0.212	0.394	0.170	0.137	0.118	0.163	0.577	0.384	0.007	0.073	0.053	0.070	0.465	0.024		0.093	0.189	0.035
7396	chr7	96327096	96340318	+	0	NA	intron (NM_006304, intron 1 of 2)	intron (NM_006304, intron 1 of 2)	5496	NM_006304	7979	Hs.489201	NM_006304	ENSG00000127922	SEM1	DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1	SEM1, 26S proteasome complex subunit	protein-coding	nan	1.054	nan	0.952	2.063	0.813	0.557	0.486	0.088	1.179	0.773	0.982	1.710	0.773	0.185	1.225	1.112	1.807	2.602	1.437	1.344	2.366	1.103	2.627	2.716	1.256	1.461	1.470	2.285	1.377	1.068	0.937	1.519	4.047	5.719	1.378	nan	1.909	0.977	0.463	0.370	0.818	0.516	0.557	0.982	0.205	0.300	0.292	0.400
4173	chr2	2010605	2020699	+	0	NA	intron (NM_001329845, intron 4 of 24)	L1MB8|LINE|L1	-267333	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding	0.669	0.642	0.670	0.053	0.395	0.238	0.421	0.090	0.129	0.201	0.196	0.224	0.716	0.033	0.146	0.732	1.282	0.193	0.360	0.579	0.646	2.941	0.458	0.120	0.169	2.025	3.002	0.849	0.764	4.860	6.697	0.396	0.496	0.281	0.366	1.351	3.053	0.400	0.424	0.235	0.172	0.019	0.340	0.421	0.224	2.340	0.060	0.473	0.480
6084	chr4	176719522	176737060	+	0	NA	intron (NR_125901, intron 6 of 7)	intron (NR_125901, intron 6 of 7)	5974	NM_201591	2823	Hs.75819	NM_005277	ENSG00000150625	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding	nan	nan	0.628	0.077	0.114	0.088	0.074	0.064	0.046	1.342	0.847	0.062	0.188	0.031	0.080	0.488	0.376	4.919	nan	0.151	0.174	0.071	0.053	0.148	0.109	4.769	5.786	0.229	0.243	7.134	8.069	0.182	0.447	1.548	1.255	0.273	0.493	0.829	0.572	0.003	0.026	0.158	0.033	0.074	0.062	0.005	0.023	0.181	0.049
6427	chr5	123138507	123152140	+	0	NA	Intergenic	Intergenic	264212	NM_004384	1456	Hs.129206	NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding	nan	2.354	0.980	0.643	2.226	1.246	0.764	0.476	0.141	0.073	0.142	0.438	1.709	0.590	0.145	0.426	0.437	3.009	nan	1.087	1.019	3.905	1.351	0.325	0.269	0.584	0.985	0.855	1.349	2.245	2.365	0.239	0.331	1.113	1.762	2.083	4.881	0.436	0.288	0.430	0.197	0.070	0.313	0.764	0.438	0.135	0.690	0.095	1.263
1646	chr11	112865622	112888320	+	0	NA	intron (NM_001076682, intron 2 of 19)	intron (NM_001076682, intron 2 of 19)	-42789	NR_120563	101928847	Hs.711235	NR_120563	ENSG00000247416	LOC101928847	-	uncharacterized LOC101928847	ncRNA	0.847	1.208	0.829	1.087	1.557	0.743	0.490	0.200	0.064	1.410	0.635	0.712	1.388	0.048	0.122	2.739	nan	0.699	0.741	1.569	1.768	2.035	0.816	0.927	0.846	2.638	nan	1.381	2.171	2.606	1.984	0.597	0.981	2.436	3.899	0.814	1.900	2.397	1.093	0.864	0.321	0.648	0.349	0.490	0.712	0.647	0.671	0.357	0.933
3010	chr16	428210	434995	+	0	NA	promoter-TSS (NR_024453)	promoter-TSS (NR_024453)	348	NM_021259	58986	Hs.288940	NM_021259	ENSG00000129925	TMEM8A	M83|TMEM6|TMEM8	transmembrane protein 8A	protein-coding	1.951	nan	3.348	3.059	2.080	1.227	1.808	1.023	0.144	1.208	0.616	4.748	4.859	1.262	0.055	2.933	4.284	1.221	1.727	2.146	1.886	nan	1.725	3.275	3.390	1.289	nan	4.104	4.901	1.519	1.129	1.100	2.175	1.777	1.486	0.997	1.728	1.784	1.121	2.973	11.269	0.437	0.537	1.808	4.748	0.774	1.073	1.044	0.345
4286	chr2	36579561	36604751	+	0	NA	intron (NM_016441, intron 1 of 16)	intron (NM_016441, intron 1 of 16)	8786	NM_016441	51232	Hs.699247	NM_016441	ENSG00000150938	CRIM1	CRIM-1|S52	cysteine rich transmembrane BMP regulator 1	protein-coding	1.335	nan	nan	0.063	0.254	0.115	0.237	1.816	0.160	0.118	0.135	0.067	0.544	1.501	0.119	1.394	0.748	2.359	7.150	0.261	0.286	0.319	0.127	2.667	nan	0.870	1.385	0.398	0.916	nan	0.368	0.348	0.997	0.088	0.106	1.013	1.218	0.209	0.365	0.029	0.089	0.015	0.119	0.237	0.067	0.008	0.254	0.369	0.323
3690	chr18	22855783	22869956	+	0	NA	intron (NM_015461, intron 3 of 7)	intron (NM_015461, intron 3 of 7)	69345	NM_015461	25925	Hs.116935	NM_015461	ENSG00000198795	ZNF521	EHZF|Evi3	zinc finger protein 521	protein-coding	1.335	0.997	0.990	0.044	0.326	0.239	6.214	1.101	0.103	0.156	0.129	0.067	1.949	0.038	0.082	0.466	0.412	0.242	nan	3.122	3.225	0.214	0.142	0.143	0.148	0.903	0.963	0.321	0.455	0.764	0.560	0.285	0.627	0.444	0.499	0.298	0.636	1.353	1.313	3.392	1.403	0.061	0.033	6.214	0.067	0.501	0.029	0.301	0.357
744	chr1	190082755	190088210	+	0	NA	intron (NM_199051, intron 7 of 7)	intron (NM_199051, intron 7 of 7)	359658	NM_001317188	339479	Hs.65765	NM_199051	ENSG00000162670	BRINP3	DBCCR1L|DBCCR1L1|FAM5C	BMP/retinoic acid inducible neural specific 3	protein-coding	0.836	nan	0.855	0.107	0.145	0.117	0.094	0.137	0.327	0.114	0.197	0.171	0.255	0.040	0.100	0.810	0.403	8.616	2.377	0.376	0.489	0.313	0.146	6.145	6.433	0.529	nan	0.281	0.267	0.493	0.202	0.346	0.688	0.207	0.185	0.674	1.238	0.405	0.364		0.039	0.017	0.028	0.094	0.171	0.052	0.038	0.142	0.111
7810	chr8	97603799	97669413	+	0	NA	Intergenic	L1MC4|LINE|L1	-20849	NM_016134	10404	Hs.156178	NM_016134	ENSG00000104324	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding	6.942	3.784	6.570	0.293	0.433	0.227	0.170	0.629	0.169	0.052	0.078	0.266	0.878	0.251	0.099	0.277	0.130	0.355	nan	0.629	0.693	0.799	0.311	0.384	0.372	0.237	0.334	1.019	1.187	0.667	0.412	0.242	0.314	0.149	0.173	5.570	9.279	0.279	0.330	0.027	0.285	0.056	0.048	0.170	0.266	0.026	0.076	0.047	2.416
7068	chr6	157541317	157559345	+	0	NA	Intergenic	Intergenic	194960	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding	nan	1.343	1.611	3.406	2.659	1.317	2.330	0.207	0.098	0.694	0.351	4.016	3.712	0.109	0.088	1.060	1.228	0.425	0.698	3.673	nan	7.177	4.163	1.718	1.768	0.269	0.432	4.883	4.840	1.384	1.136	0.782	1.197	2.904	2.506	0.581	nan	1.402	0.658	2.973	1.854	0.873	1.047	2.330	4.016	0.729	2.953	0.627	0.157
5485	chr3	115847920	115863012	+	0	NA	intron (NM_002338, intron 1 of 6)	intron (NM_002338, intron 1 of 6)	-223405	NR_109998	101926903	Hs.26479	NR_109998	ENSG00000240922	LSAMP-AS1	-	LSAMP antisense RNA 1	ncRNA	1.089	nan	0.754	0.099	0.587	0.339	0.305	0.267	0.225	0.355	0.215	0.112	0.192	0.165	0.096	0.386	0.214	1.733	0.591	0.317	nan	0.411	0.182	0.282	0.312	nan	5.240	0.279	0.248	0.905	0.533	0.094	0.171	0.340	0.437	0.294	0.624	0.753	0.508	0.062	0.041	0.102	0.142	0.305	0.112	0.058	0.051	0.046	0.132
4562	chr2	160466084	160476424	+	0	NA	promoter-TSS (NR_110587)	promoter-TSS (NR_110587)	-551	NR_110588	643072	Hs.632541	NR_110587		LOC643072	-	uncharacterized LOC643072	ncRNA	4.675	2.738	nan	3.519	6.656	3.422	2.573	2.424	0.136	2.424	1.818	3.809	4.792	2.393	0.089	4.011	4.495	5.858	7.423	5.899	5.598	4.062	1.636	10.194	10.689	4.526	4.942	4.523	7.146	9.316	9.163	3.104	4.400	4.434	5.865	8.329	7.729	2.616	1.356	3.173	1.904	0.967	1.816	2.573	3.809	1.050	0.953	1.913	3.221
287	chr1	45982616	45992352	+	0	NA	5' UTR (NM_181696, exon 1 of 6)	5' UTR (NM_181696, exon 1 of 6)	126	NM_002574	5052	Hs.180909	NM_002574	ENSG00000117450	PRDX1	MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2	peroxiredoxin 1	protein-coding	nan	2.257	7.476	2.808	2.507	1.515	2.366	1.617	0.349	1.711	1.337	1.629	4.048	2.931	0.188	2.934	3.731	3.628	6.256	5.645	5.303	4.632	1.106	9.226	9.026	3.296	4.003	nan	7.963	3.069	3.178	3.539	nan	3.627	4.638	3.974	5.147	2.397	1.547	1.205	1.668	0.709	1.667	2.366	1.629	1.380	1.432	1.065	1.986
4914	chr20	30696496	30699521	+	0	NA	intron (NM_014742, intron 1 of 17)	intron (NM_014742, intron 1 of 17)	699	NM_014742	9777	Hs.654665	NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding	8.174	6.139	3.952	5.564	6.630	2.492	2.343	4.425	0.269	2.491	1.095	5.332	11.279	4.545	0.211	13.536	9.298	8.822	12.053	6.869	nan	15.892	13.103	14.833	17.502	6.818	7.455	10.463	14.305	13.956	11.769	5.837	9.019	6.984	9.865	11.068	8.740	3.664	1.859	4.684	3.119	1.263	2.250	2.343	5.332	3.240	2.148	1.668	2.978
932	chr1	234804051	234812956	+	0	NA	Intergenic	Intergenic	26468	NR_125944	101927787	Hs.520658	NR_125944	ENSG00000228044	LOC101927787	-	uncharacterized LOC101927787	ncRNA	1.924	1.874	1.597	1.985	2.608	1.142	0.467	0.279	0.036	1.585	0.453	2.282	4.589	0.063	0.133	0.705	1.075	0.501	0.936	1.662	2.300	nan	0.702	0.411	0.437	0.912	1.207	nan	3.387	2.038	2.022	0.321	0.394	0.965	0.955	2.385	7.437	nan	1.349	0.270	1.791	0.158	0.223	0.467	2.282	0.044	0.800	0.133	4.913
2595	chr14	55492305	55496158	+	0	NA	promoter-TSS (NM_007086)	promoter-TSS (NM_007086)	387	NM_199421	122809	Hs.744302	NM_080867	ENSG00000180008	SOCS4	SOCS7	suppressor of cytokine signaling 4	protein-coding	nan	nan	4.163	7.026	3.945	2.363	4.987	3.562	0.252	2.035	0.855	4.531	9.599	3.546	0.217	6.102	4.227	6.613	9.839	12.042	10.811	9.126	4.865	17.207	17.839	6.125	7.508	9.151	15.240	12.401	11.444	5.595	8.699	9.484	12.805	4.926	5.332	5.165	2.548	6.098	3.577	1.408	2.039	4.987	4.531	1.101	2.778	1.950	1.232
3908	chr18	74960306	74984749	+	0	NA	intron (NM_001480, intron 2 of 2)	MLT1A0|LTR|ERVL-MaLR	10519	NM_001480	2587	Hs.272191	NM_001480	ENSG00000166573	GALR1	GALNR|GALNR1	galanin receptor 1	protein-coding	nan	nan	0.612	0.070	0.370	0.210	0.779	0.058	0.046	0.513	0.341	0.367	1.175	0.013	0.060	0.467	0.334	0.181	0.328	0.790	nan	7.701	1.950	0.210	0.240	0.112	0.225	0.821	nan	0.331	0.127	0.114	0.185	0.786	0.722	0.073	0.100	1.344	0.833	0.039	0.105	0.070	0.124	0.779	0.367	0.043	0.318	0.020	0.026
3858	chr18	59131385	59142500	+	0	NA	intron (NM_031891, intron 1 of 11)	intron (NM_031891, intron 1 of 11)	136127	NM_031891	28316	Hs.671510	NM_031891	ENSG00000101542	CDH20	CDH7L3|Cdh7	cadherin 20	protein-coding	nan	0.754	0.770	0.079	0.228	0.072	5.267	0.060	0.029	0.128	0.187	0.043	0.284	0.059	0.082	0.294	0.194	0.235	0.390	0.435	0.571	6.740	1.916	0.473	0.462	0.139	0.202	0.275	0.451	0.254	0.180	0.044	0.173	5.557	5.433	0.358	0.627	nan	1.526	0.015	0.040	1.569	0.092	5.267	0.043	0.018	0.018	0.009	0.144
515	chr1	149032785	149036114	+	0	NA	intron (NR_104217, intron 2 of 17).2	HSATII|Satellite|Satellite	75276	NR_104217	101929780	Hs.534675	NR_104217	ENSG00000272150	NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family member 25, pseudogene	pseudo	8.276	nan	8.081	0.784	2.141	1.333	1.307	1.050	9.715	1.224	2.618	0.670	3.705	0.525	3.176	4.170	1.960	1.398	2.071	2.983	4.398	1.950	2.031	2.075	1.983	3.317	3.740	3.099	2.879	4.717	1.860	2.714	3.970	1.510	2.325	2.849	3.552	1.487	2.148	0.319	0.771	0.605	0.441	1.307	0.670	0.235	0.520	1.009	0.701
2761	chr14	100196199	100222469	+	0	NA	Intergenic	Intergenic	-50411	NM_004434	2009	Hs.12451	NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAPL|HuEMAP	echinoderm microtubule associated protein like 1	protein-coding	1.725	0.683	0.850	0.101	0.356	0.183	0.417	0.431	0.171	0.143	0.102	0.160	0.664	0.276	0.090	0.741	0.852	2.932	5.343	0.836	0.822	0.155	0.083	0.120	0.122	0.653	1.178	0.352	0.506	1.323	1.029	0.320	0.513	0.220	0.198	0.401	1.072	0.541	0.490	0.279	0.099	0.040	0.107	0.417	0.160	0.162	0.031	0.046	0.079
4871	chr20	19866483	19872338	+	0	NA	promoter-TSS (NM_018993)	promoter-TSS (NM_018993)	-800	NM_018993	54453	Hs.472270	NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding	1.769	nan	5.762	1.055	1.296	0.657	0.197	2.652	0.155	2.037	0.896	4.347	12.951	0.018	0.026	1.796	3.400	0.953	2.450	4.270	4.483	3.631	0.853	0.568	0.623	0.517	0.958	6.114	3.074	0.506	0.430	0.581	0.669	1.611	1.256	0.633	1.834	2.336	1.478	3.129	2.618	0.230	0.041	0.197	4.347	0.134	1.714	0.169	0.499
1107	chr10	42526943	42531377	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	334333	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo	32.071	34.948	33.508	16.160	28.771	18.453	18.471	18.641	54.957	12.657	20.456	12.841	24.949	9.411	16.496	34.906	21.778	31.142	40.967	29.171	33.037	18.501	15.403	27.838	28.957	21.450	24.586	23.011	19.381	34.994	17.030	21.803	29.139	8.843	12.910	20.166	22.293	14.000	18.550	4.276	9.079	4.265	5.261	18.471	12.841	4.067	7.531	7.098	5.226
2996	chr15	93339795	93388861	+	0	NA	Intergenic	AluSx1|SINE|Alu	25614	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo	nan	nan	nan	2.551	2.835	1.512	2.852	1.091	0.346	1.706	0.903	3.884	7.430	3.345	0.171	3.542	3.851	2.023	3.786	3.546	3.296	nan	1.530	4.857	5.044	2.649	3.054	4.664	6.582	nan	4.494	2.772	3.868	2.354	2.717	2.178	nan	1.939	1.018	1.761	5.284	0.559	1.503	2.852	3.884	0.860	1.465	2.918	1.228
3499	chr17	61848251	61858760	+	0	NA	intron (NM_007372, intron 2 of 18)	intron (NM_007372, intron 2 of 18)	1956	NM_007372	11325	Hs.702010	NM_007372	ENSG00000198231	DDX42	DDX42P|RHELP|RNAHP|SF3B8|SF3b125	DEAD-box helicase 42	protein-coding	3.508	nan	2.593	3.365	4.574	2.650	2.294	1.872	0.351	1.972	0.839	2.300	4.728	2.211	0.190	5.290	4.615	3.573	5.750	4.407	4.652	4.014	3.109	11.035	11.487	2.648	nan	6.019	8.341	5.408	5.405	2.940	4.723	3.036	3.844	3.985	4.527	2.391	0.951	0.901	2.367	0.532	1.599	2.294	2.300	0.534	1.295	1.359	1.357
3838	chr18	55607703	55615684	+	0	NA	Intergenic	L1ME4a|LINE|L1	-99917	NM_015277	23327	Hs.185677	NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding	nan	0.943	1.532	0.193	0.405	0.080	0.428	0.129	0.101	0.117	0.075	0.305	0.414	0.042	0.071	2.538	1.159	6.666	0.738	0.721	0.749	1.796	0.667	17.215	18.199	0.469	0.778	0.637	0.519	0.557	0.253	0.329	0.450	0.311	0.475	0.392	1.500	nan	1.219	0.084	0.100	0.085	0.088	0.428	0.305	0.135	0.057	0.087	0.297
6614	chr6	11025934	11045149	+	0	NA	intron (NM_017770, intron 1 of 7)	intron (NM_017770, intron 1 of 7)	-8450	NR_038964	100506409	Hs.43818	NR_038962		ELOVL2-AS1	-	ELOVL2 antisense RNA 1	ncRNA	1.542	nan	1.134	0.498	0.585	0.308	0.722	0.212	0.175	0.269	0.359	1.011	0.419	0.184	0.090	1.319	1.223	2.013	0.904	1.686	1.528	1.157	0.515	1.924	2.004	0.869	1.206	0.092	0.099	2.673	2.548	1.526	2.736	0.721	0.636	3.225	5.810	1.151	0.804	0.137	0.608	0.099	0.683	0.722	1.011	0.005	0.111	1.157	2.235
5370	chr3	51420994	51430094	+	0	NA	intron (NM_006010, intron 3 of 3)	L2a|LINE|L2	2876	NM_006010	7873	Hs.436446	NM_006010	ENSG00000145050	MANF	ARMET|ARP	mesencephalic astrocyte derived neurotrophic factor	protein-coding	3.198	2.808	nan	1.950	2.253	0.719	1.829	2.183	0.250	1.088	0.601	2.535	5.420	2.255	0.093	2.688	2.542	4.787	6.870	4.828	4.678	3.882	3.036	6.054	6.059	1.809	2.417	3.595	8.981	nan	5.030	3.854	6.979	2.885	3.210	5.287	3.333	2.011	1.102	1.365	1.643	0.503	1.482	1.829	2.535	0.502	2.325	0.988	1.085
4104	chr19	46874404	46890283	+	0	NA	intron (NM_001204284, intron 4 of 11)	AluSc|SINE|Alu	32092	NM_001204284	5536	Hs.654604	NM_006247	ENSG00000011485	PPP5C	PP5|PPP5|PPT	protein phosphatase 5 catalytic subunit	protein-coding	1.299	1.537	1.913	0.888	0.429	0.227	0.447	0.751	0.111	0.300	0.256	0.580	2.044	0.191	0.130	0.368	0.542	0.502	0.775	1.708	1.905	1.007	0.280	1.792	1.768	4.036	4.384	1.710	2.229	0.696	0.712	0.311	0.497	0.797	1.123	0.488	1.253	1.942	0.821	0.904	0.379	0.247	0.065	0.447	0.580	0.500	1.161	0.125	0.225
8052	chr9	13427030	13452477	+	0	NA	Intergenic	Intergenic	-8425	NR_033863	401492	Hs.632651	NR_033863	ENSG00000270547	LINC01235	-	long intergenic non-protein coding RNA 1235	ncRNA	nan	nan	1.748	0.548	0.536	0.325	0.488	0.205	0.082	2.194	1.358	1.143	16.337	0.046	0.103	0.241	0.133	2.428	2.559	0.852	1.023	2.256	0.536	0.097	0.083	27.019	26.772	0.646	0.546	0.440	0.151	0.143	0.281	3.641	2.617	0.214	0.330	6.462	3.312	0.797	0.077	0.390	0.133	0.488	1.143	0.057	0.419	0.050	0.020
7301	chr7	61739953	61758364	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1015276	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo	nan	nan	nan	0.449	0.991	0.574	0.598	0.514	4.314	0.393	1.313	0.273	1.797	0.282	1.658	1.717	0.694	0.363	0.401	1.026	1.779	0.549	0.441	0.697	0.666	1.289	1.746	1.115	1.190	1.960	0.454	0.551	1.270	0.373	0.698	0.707	1.404	0.413	0.688	0.137	0.276	0.268	0.190	0.598	0.273	0.079	0.199	0.333	0.431
5652	chr3	170239265	170250584	+	0	NA	intron (NM_020949, intron 1 of 7)	intron (NM_020949, intron 1 of 7)	58939	NM_020949	57709	Hs.596660	NM_020949	ENSG00000013293	SLC7A14	PPP1R142	solute carrier family 7 member 14	protein-coding	1.775	1.108	1.277	0.351	0.546	0.210	0.181	0.252	0.115	0.401	0.259	0.247	0.458	0.009	0.076	0.423	0.457	0.544	0.475	0.563	0.720	0.293	0.151	0.274	0.277	4.114	4.671	2.416	2.068	2.025	2.133	0.791	1.260	0.406	0.452	0.689	1.327	1.075	0.808	1.357	1.290	0.109	0.119	0.181	0.247	1.691	0.134	0.853	0.139
3958	chr19	8038913	8051857	+	0	NA	intron (NM_001419, intron 3 of 5)	intron (NM_001419, intron 3 of 5)	25144	NM_001419	1994	Hs.184492	NM_001419	ENSG00000066044	ELAVL1	ELAV1|HUR|Hua|MelG	ELAV like RNA binding protein 1	protein-coding	0.747	0.559	1.204	0.396	0.312	0.211	0.193	0.158	0.016	0.194	0.070	0.101	0.486	0.151	0.058	0.276	0.449	0.403	0.895	0.551	0.688	0.351	0.171	0.404	0.493	0.286	0.537	0.827	nan	0.573	0.532	0.206	0.317	0.208	0.167	0.195	0.286	0.600	0.444	4.704	0.294	0.029	0.102	0.193	0.101	0.122	0.046	0.069	0.086
8311	chr9	135842554	135860075	+	0	NA	intron (NM_004188, intron 3 of 10)	intron (NM_004188, intron 3 of 10)	-2784	NM_001135031	8328	Hs.553160	NM_004188	ENSG00000165702	GFI1B	BDPLT17|ZNF163B	growth factor independent 1B transcriptional repressor	protein-coding	nan	0.568	0.546	0.232	0.305	0.228	0.213	0.123	0.211	0.115	0.160	0.144	0.463	0.075	0.067	3.072	5.291	6.633	3.027	0.516	0.589	nan	0.117	1.680	1.502	0.135	0.255	0.392	0.525	0.509	0.215	3.294	5.055	0.114	0.136	0.148	0.184	0.377	0.407	0.206	0.081	0.016	0.022	0.213	0.144	0.061	0.069	4.935	0.046
3831	chr18	55096394	55115786	+	0	NA	intron (NM_004852, intron 1 of 1)	CpG	3173	NM_004852	9480	Hs.194725	NM_004852	ENSG00000119547	ONECUT2	OC-2|OC2	one cut homeobox 2	protein-coding	nan	1.023	1.734	1.081	1.093	0.551	2.655	0.054	0.060	0.557	0.371	1.344	3.869	0.269	0.059	2.012	2.572	1.070	0.865	2.572	2.332	2.382	0.668	0.468	0.558	1.050	1.408	1.315	1.686	1.064	1.308	1.290	2.518	3.975	4.714	0.517	0.900	nan	1.913	0.502	0.798	1.143	2.011	2.655	1.344	0.275	1.240	1.386	0.083
2192	chr12	123734719	123743948	+	0	NA	intron (NM_001143905, intron 2 of 2)	AluSx|SINE|Alu	13468	NM_001270434	8099	Hs.433201	NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding	2.517	0.933	2.632	1.278	0.647	0.453	0.386	0.143	0.156	0.219	0.199	1.618	0.908	0.317	0.108	1.539	2.147	0.825	1.750	1.030	1.213	nan	0.366	2.351	2.377	4.269	5.554	4.803	6.030	3.557	3.634	0.766	1.145	2.345	2.878	2.721	6.717	1.265	0.515	1.020	1.033	0.966	3.053	0.386	1.618	1.418	0.495	0.332	2.308
4655	chr2	197788035	197793367	+	0	NA	intron (NM_001321099, intron 1 of 27)	intron (NM_001321099, intron 1 of 27)	753	NM_024989	80055	Hs.229988	NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|SPG67	post-GPI attachment to proteins 1	protein-coding	4.787	5.034	3.641	5.137	5.473	2.436	4.795	2.258	0.299	2.348	1.670	6.828	18.635	1.798	0.104	2.879	4.489	4.177	5.674	14.428	10.356	9.311	4.316	6.673	7.444	4.519	5.747	6.521	11.093	9.409	10.116	2.218	5.894	5.558	5.604	4.991	6.545	2.953	1.596	6.710	3.920	1.619	2.701	4.795	6.828	1.789	3.067	3.029	1.819
7729	chr8	66176893	66190104	+	0	NA	Intergenic	Intergenic	-90923	NR_038901	552859	Hs.156997	NR_038901	ENSG00000280725	LINC00251	C8orf25|NCRNA00251	long intergenic non-protein coding RNA 251	ncRNA	1.332	0.639	0.586	0.180	0.205	0.159	0.141	0.063	0.086	0.111	0.088	0.277	0.274	0.008	0.100	0.296	0.106	0.301	0.239	0.506	0.605	0.133	0.041	0.116	0.124	4.153	nan	0.099	0.164	nan	0.578	0.080	0.185	0.070	0.099	0.414	0.887	0.687	0.733	0.055	0.054	0.014	0.036	0.141	0.277	0.065	0.015	0.038	0.094
1995	chr12	64370831	64379890	+	0	NA	intron (NM_020762, intron 1 of 21)	intron (NM_020762, intron 1 of 21)	136827	NM_020762	57522	Hs.210751	NM_020762	ENSG00000196935	SRGAP1	ARHGAP13|NMTC2	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.841	0.609	0.819	0.116	0.489	0.300	0.239	0.354	0.107	0.213	0.233	0.131	0.407	0.174	0.082	3.608	3.175	6.890	6.821	0.355	nan	1.881	0.509	0.639	0.583	0.755	1.088	0.631	0.645	0.376	0.214	0.617	0.643	0.689	1.083	0.234	0.289	0.850	0.818	0.030	0.137	0.188	0.220	0.239	0.131	0.043	0.113	0.142	0.082
333	chr1	60548762	60568910	+	0	NA	Intergenic	Intergenic	-19394	NM_152377	127795	Hs.47385	NM_152377	ENSG00000162598	C1orf87	CREF	chromosome 1 open reading frame 87	protein-coding	1.019	0.817	nan	0.418	0.404	0.207	0.159	0.120	0.089	0.207	0.125	0.407	0.513	0.054	0.103	0.426	0.384	0.139	0.177	0.880	1.057	4.491	2.624	0.213	0.269	nan	nan	1.214	nan	0.427	0.186	0.185	0.234	0.140	0.177	0.335	0.495	1.877	0.793	0.194	0.151	0.019	0.056	0.159	0.407	0.067	0.048	0.035	0.117
6686	chr6	26913751	26944426	+	0	NA	intron (NR_026775, intron 1 of 2)	intron (NR_026775, intron 1 of 2)	4316	NR_026775	100133205	Hs.526951	NR_026775	ENSG00000224843	LINC00240	C6orf41|NCRNA00240|bA373D17.1	long intergenic non-protein coding RNA 240	ncRNA	1.208	1.502	nan	2.463	1.081	0.623	0.825	0.417	0.169	2.052	1.384	2.475	nan	0.510	0.168	1.138	1.220	1.141	nan	1.920	1.909	nan	1.517	2.320	2.218	2.249	2.264	2.042	2.679	1.678	1.342	0.535	0.948	2.976	4.225	0.539	0.844	2.190	1.042	0.347	1.020	2.143	0.814	0.825	2.475	0.405	0.960	0.809	0.263
6944	chr6	124343273	124405604	+	0	NA	intron (NM_153355, intron 1 of 5)	intron (NM_153355, intron 1 of 5)	-229713	NM_001300740	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding	0.827	0.973	1.002	1.186	4.821	2.558	0.214	0.119	0.068	0.598	0.508	1.820	0.986	0.047	0.114	0.494	0.393	0.303	0.256	1.512	1.812	3.447	1.383	0.941	1.007	0.864	0.937	1.566	1.466	0.681	0.421	0.119	0.242	3.612	4.147	0.206	0.327	0.665	0.408	1.046	3.652	1.042	0.104	0.214	1.820	0.094	0.283	0.054	0.071
5972	chr4	94748555	94758308	+	0	NA	Intergenic	Intergenic	3353	NM_005172	474	Hs.532680	NM_005172	ENSG00000172238	ATOH1	ATH1|HATH1|MATH-1|bHLHa14	atonal bHLH transcription factor 1	protein-coding	0.343	0.466	0.366	0.268	0.329	0.149	0.273	0.062	0.042	0.115	0.065	0.012	0.758	0.034	0.054	0.495	0.608	0.323	0.588	0.419	0.327	0.121	0.019	0.308	0.392	0.121	0.190	0.343	0.345	0.373	0.216	0.137	0.230	0.085	0.156	0.083	0.155	0.138	0.202	0.247	0.074	0.044	7.349	0.273	0.012	0.020	0.052	0.022	0.025
6525	chr5	158293971	158310489	+	0	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	224540	NM_001324101	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding	0.968	nan	2.008	0.028	0.883	0.456	0.341	0.824	0.175	0.076	0.105	0.225	0.373	0.053	0.112	0.846	0.735	0.354	0.323	1.499	1.445	0.091	0.064	0.056	0.075	1.010	1.360	0.076	0.135	1.482	1.232	0.712	1.260	0.169	0.118	0.307	0.733	0.965	0.506	1.276	3.220	0.035	3.417	0.341	0.225	0.135	0.036	0.817	0.254
7778	chr8	88971258	88993198	+	0	NA	Intergenic	Intergenic	-95932	NM_152418	138009	Hs.371738	NM_152418	ENSG00000176566	DCAF4L2	WDR21C	DDB1 and CUL4 associated factor 4 like 2	protein-coding	1.769	nan	nan	0.160	0.509	0.248	0.624	0.158	0.147	0.057	0.018	0.062	0.340	0.035	0.086	0.342	0.247	0.390	0.590	0.285	0.431	2.224	0.820	0.277	0.313	3.339	3.545	nan	0.545	1.604	1.370	0.159	0.241	1.214	1.453	0.417	0.704	0.536	0.516	0.141	0.196	0.230	0.018	0.624	0.062	0.017	0.365	0.112	0.762
4427	chr2	89050996	89058190	+	0	NA	Intergenic	Intergenic	-10826	NR_015424	645784	Hs.105323	NR_015424	ENSG00000230006	ANKRD36BP2	-	ankyrin repeat domain 36B pseudogene 2	pseudo	nan	0.623	nan	0.291	0.780	0.513	0.280	0.173	0.089	0.237	0.193	0.384	3.318	0.053	0.087	0.446	0.522	0.239	0.360	2.144	1.898	0.685	0.343	0.456	0.548	0.394	0.571	0.431	0.244	0.199	0.184	0.311	0.596	0.112	0.141	0.321	0.900	5.447	2.438	1.656	0.238	0.080	0.077	0.280	0.384	0.013	0.141	0.168	0.084
4451	chr2	101722219	101752765	+	0	NA	intron (NR_138475, intron 1 of 18)	intron (NR_138475, intron 1 of 18)	30417	NM_001102426	11138	Hs.442657	NM_007063	ENSG00000204634	TBC1D8	AD3|GRAMD8|HBLP1|TBC1D8A|VRP	TBC1 domain family member 8	protein-coding	1.037	nan	1.749	1.919	0.678	0.351	0.254	0.737	0.126	0.645	0.463	1.772	2.031	0.074	0.084	0.329	0.329	0.326	0.809	1.350	1.344	2.758	0.792	0.321	0.343	0.344	0.545	3.366	3.820	0.669	0.457	0.463	0.856	0.789	1.209	1.367	2.722	1.272	0.741	0.632	0.214	0.172	0.081	0.254	1.772	0.150	0.736	0.681	0.754
7483	chr7	130125367	130138939	+	0	NA	5' UTR (NM_001253900, exon 1 of 12)	5' UTR (NM_001253900, exon 1 of 12)	254	NM_001253900	4232	Hs.270978	NM_002402	ENSG00000106484	MEST	PEG1	mesoderm specific transcript	protein-coding	nan	nan	nan	1.243	1.683	0.862	1.175	0.652	0.107	1.847	1.199	4.730	1.731	0.384	0.140	1.494	1.311	1.016	1.577	6.964	6.809	nan	1.230	2.357	2.321	2.781	nan	1.760	2.570	nan	3.281	0.907	1.551	5.153	5.094	0.286	0.616	1.946	nan	4.376	0.895	1.644	1.069	1.175	4.730	0.654	0.936	0.306	0.046
3901	chr18	74322243	74336307	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-2459	NR_120419	400660	Hs.131718	NR_120419	ENSG00000266256	LINC00683	-	long intergenic non-protein coding RNA 683	ncRNA	nan	nan	0.636	1.065	2.035	0.997	2.105	0.069	0.036	0.680	0.399	3.995	1.071	0.046	0.094	0.540	0.513	0.470	0.557	1.926	nan	7.037	2.873	0.422	0.389	0.048	0.139	5.549	nan	1.230	1.077	0.513	1.031	0.588	0.633	0.295	0.672	2.462	1.371	0.212	1.183	0.054	0.220	2.105	3.995	0.041	0.935	0.558	0.088
1582	chr11	94275585	94288101	+	0	NA	3' UTR (NM_002033, exon 1 of 1)	3' UTR (NM_002033, exon 1 of 1)	4826	NM_002033	2526	Hs.390420	NM_002033	ENSG00000196371	FUT4	CD15|ELFT|FCT3A|FUC-TIV|FUTIV|LeX|SSEA-1	fucosyltransferase 4	protein-coding	1.386	nan	1.146	1.293	1.284	0.951	1.126	0.275	0.129	0.490	0.311	1.447	1.799	0.609	0.125	1.783	1.956	0.272	nan	2.758	3.087	1.734	0.948	6.565	6.786	2.260	2.931	2.010	2.923	3.191	4.106	1.633	2.473	1.480	1.370	1.258	nan	1.130	0.794	1.234	0.802	0.289	5.085	1.126	1.447	0.496	0.429	0.809	0.498
2842	chr15	36783567	36845598	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-57222	NM_001321756	84529	Hs.48348	NM_032499	ENSG00000186073	C15orf41	HH114	chromosome 15 open reading frame 41	protein-coding	0.800	nan	nan	0.088	0.318	0.223	0.252	0.570	0.090	0.288	0.234	0.071	0.243	4.765	0.163	0.601	0.527	0.191	0.326	0.245	0.311	0.949	0.550	0.127	0.128	0.686	0.779	0.192	0.221	0.594	0.230	0.419	0.767	0.844	1.041	0.403	0.650	0.558	0.521	0.019	0.067	0.292	0.081	0.252	0.071	0.030	0.016	0.521	0.121
2900	chr15	61315243	61320532	+	0	NA	intron (NM_134261, intron 1 of 10)	intron (NM_134261, intron 1 of 10)	203615	NM_134261	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding	0.602	0.691	nan	0.101	0.426	0.096	0.187	0.103	0.030	0.177	0.125	0.263	0.384	0.038	0.100	0.347	0.396	9.890	5.934	0.303	0.376	nan	0.114	0.170	0.137	0.117	0.246	0.325	0.250	0.484	0.306	0.254	0.269	0.087	0.066	0.258	0.396	0.409	0.427	0.010	0.060	0.018	0.029	0.187	0.263	0.109	0.020	0.038	0.039
7981	chr8	143171475	143191790	+	0	NA	Intergenic	Intergenic	-76068	NR_039682	100616268		NR_039682	ENSG00000265247	MIR4472-1	-	microRNA 4472-1	ncRNA	1.122	0.515	nan	0.078	0.451	0.244	0.184	0.073	0.048	0.079	0.062	0.566	0.826	0.027	0.056	0.338	0.396	0.119	0.154	nan	2.647	nan	0.076	0.169	0.177	0.791	0.976	1.065	0.810	0.711	0.566	0.467	0.417	0.125	0.187	0.228	0.264	0.641	0.526	3.014	0.809	0.014	0.063	0.184	0.566	0.235	0.102	0.092	0.060
2283	chr13	40795508	40811326	+	0	NA	Intergenic	L2c|LINE|L2	-8778	NR_033877	400123	Hs.577960	NR_033877	ENSG00000215483	LINC00548	-	long intergenic non-protein coding RNA 548	ncRNA	1.555	0.839	0.889	0.191	0.171	0.071	0.081	0.094	0.051	0.010	0.073	0.175	0.346	0.054	0.063	0.428	0.363	0.199	0.384	0.302	0.425	0.222	0.070	0.126	0.143	3.561	3.534	0.124	0.087	3.962	3.683	0.241	0.283	0.061	0.063	1.498	3.866	0.159	0.176	0.947	0.108	0.012	0.045	0.081	0.175	0.386	0.186	0.087	0.716
2603	chr14	56657361	56675574	+	0	NA	intron (NM_021255, intron 2 of 5)	intron (NM_021255, intron 2 of 5)	81374	NM_021255	57161	Hs.657926	NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding	nan	nan	2.558	0.540	1.206	0.792	0.511	1.424	0.097	0.553	0.304	0.664	0.708	0.047	0.127	0.440	0.601	0.420	0.650	0.934	0.869	1.176	0.343	1.738	1.768	0.112	0.283	2.261	2.067	1.627	1.573	0.354	0.601	1.012	2.098	2.687	9.589	nan	0.820	0.961	0.557	0.219	0.126	0.511	0.664	0.095	1.717	0.109	1.557
4955	chr20	42085143	42088454	+	0	NA	intron (NM_006275, intron 1 of 5)	CpG	294	NR_034009	6431	Hs.684950	NM_006275	ENSG00000124193	SRSF6	B52|HEL-S-91|SFRS6|SRP55	serine and arginine rich splicing factor 6	protein-coding	7.854	7.384	6.599	9.136	8.733	5.322	5.860	4.939	0.245	3.720	1.399	6.987	17.328	6.723	0.192	15.751	16.108	8.746	12.017	12.177	12.111	14.708	10.426	16.097	16.729	6.405	7.776	12.773	17.203	nan	16.827	8.890	16.000	6.670	6.705	12.775	9.497	2.512	1.692	3.345	6.560	0.983	4.838	5.860	6.987	2.351	3.391	3.549	3.952
2695	chr14	78559858	78573242	+	0	NA	Intergenic	MIR|SINE|MIR	-70166	NM_001330195	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding	1.138	0.886	0.764	0.133	0.279	0.131	0.335	0.146	0.073	0.118	0.138	0.108	0.860	0.040	0.148	0.251	0.140	0.189	0.150	0.466	0.522	1.527	0.417	0.143	0.202	0.191	0.354	0.683	nan	0.838	0.963	0.077	0.145	1.533	1.156	0.195	0.209	4.175	nan	5.214	0.823	0.220	0.266	0.335	0.108	0.051	0.023	0.015	0.065
1238	chr10	123871376	123903032	+	0	NA	intron (NM_001291879, intron 1 of 16)	intron (NM_001291879, intron 1 of 16)	14650	NM_001291879	10579	Hs.501252	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	transforming acidic coiled-coil containing protein 2	protein-coding	nan	1.159	1.404	0.224	0.604	0.274	0.182	1.390	0.223	0.090	0.083	0.696	0.599	0.616	0.083	0.385	0.311	1.089	1.508	0.476	0.419	0.884	0.311	0.508	0.482	0.507	0.759	3.744	3.986	0.485	0.448	0.237	0.336	0.101	0.189	0.747	1.442	0.514	0.404	0.942	1.839	0.033	0.067	0.182	0.696	0.241	1.686	0.060	0.298
1559	chr11	85369660	85377818	+	0	NA	3' UTR (NM_001039618, exon 1 of 1)	3' UTR (NM_001039618, exon 1 of 1)	2443	NR_028027	58487	Hs.535319	NM_021212	ENSG00000137504	CREBZF	SMILE|ZF	CREB/ATF bZIP transcription factor	protein-coding	2.802	2.828	1.893	3.099	3.645	1.662	2.287	0.886	0.039	1.458	0.943	3.106	5.791	2.413	0.167	5.185	4.966	4.351	6.395	6.785	6.978	5.790	3.628	15.233	16.105	3.440	4.102	4.950	7.632	5.533	5.632	4.994	7.853	4.127	5.252	3.660	3.410	2.782	1.465	2.612	2.870	0.925	2.314	2.287	3.106	2.484	1.715	1.746	0.989
1793	chr12	6676363	6678418	+	0	NA	5' UTR (NM_001258309, exon 1 of 17)	5' UTR (NM_001258309, exon 1 of 17)	108	NM_001033714	4839	Hs.534334	NM_006170	ENSG00000111641	NOP2	NOL1|NOP120|NSUN1|p120	NOP2 nucleolar protein	protein-coding	3.439	nan	3.411	8.637	3.365	2.484	3.680	0.913	0.233	2.802	1.603	3.198	9.618	6.066	0.260	3.129	3.234	5.027	7.854	7.173	6.787	11.517	4.181	7.387	8.026	5.864	7.479	5.288	6.442	5.652	5.950	3.027	5.390	4.744	5.764	5.995	7.827	2.247	0.970	3.185	3.484	1.116	2.571	3.680	3.198	6.798	0.905	1.251	2.419
7	chr1	1049849	1089999	+	0	NA	Intergenic	Intergenic	-2473	NR_038869	254099	Hs.680488	NR_038869	ENSG00000223823	LINC01342	-	long intergenic non-protein coding RNA 1342	ncRNA	0.920	nan	1.784	2.263	2.701	1.507	0.271	0.142	0.112	0.730	0.291	1.232	1.402	0.306	0.081	1.893	2.492	0.350	0.608	4.634	4.171	1.435	0.599	7.580	7.929	0.234	nan	nan	7.055	nan	0.237	1.915	1.976	0.505	0.458	0.256	0.358	0.929	0.622	3.472	3.328	0.086	3.634	0.271	1.232	0.605	0.596	0.823	0.053
1701	chr11	120614411	120626555	+	0	NA	intron (NM_001282470, intron 2 of 19)	intron (NM_001282470, intron 2 of 19)	69341	NR_133008	105369532	Hs.694510	NR_133008		LOC105369532	-	uncharacterized LOC105369532	ncRNA	0.994	1.342	1.736	0.079	6.480	3.421	1.046	0.085	0.057	0.285	0.313	0.020	4.439	0.035	0.110	0.777	0.847	0.300	0.410	0.756	0.712	0.201	0.089	0.388	0.413	5.408	5.282	0.097	0.157	0.839	0.574	0.949	1.421	3.150	1.752	0.515	nan	3.880	1.809	1.406	0.329	0.699	0.039	1.046	0.020	0.239	2.637	0.578	0.501
7157	chr7	10293149	10300661	+	0	NA	Intergenic	Intergenic	623005	NR_002790	168741	Hs.545134	NR_002790		PER4	-	period circadian clock 3 pseudogene	pseudo	nan	1.075	nan	0.072	0.341	0.292	0.137	0.086	0.043	0.062	0.091	0.111	0.250	0.058	0.117	nan	0.378	0.140	0.211	0.375	0.398	0.274	0.112	0.355	0.514	7.393	7.244	0.303	0.301	0.330	0.087	0.156	0.197	0.118	0.100	0.382	0.555	0.496	0.343	0.015	0.039	0.051	0.075	0.137	0.111	0.052	0.027	0.026	0.050
5027	chr20	59138434	59152319	+	0	NA	Intergenic	L1MB5|LINE|L1	5756	NR_039653	100616440		NR_039653	ENSG00000265617	MIR548AG2	-	microRNA 548ag-2	ncRNA	0.650	0.908	0.465	0.075	1.287	0.583	0.064	0.066	0.069	0.528	0.415	0.060	0.306	0.039	0.141	0.880	nan	0.066	0.018	0.298	0.436	1.805	0.786	0.295	0.385	0.463	0.831	0.224	0.252	0.375	0.156	0.190	0.236	0.232	0.280	0.239	0.363	3.311	1.493	0.056	0.276	0.062	0.023	0.064	0.060	0.118	0.134	0.037	0.071
6491	chr5	145786308	145794528	+	0	NA	Intergenic	Intergenic	-36455	NM_001040006	10915	Hs.443465	NM_006706	ENSG00000113649	TCERG1	CA150|TAF2S|Urn1	transcription elongation regulator 1	protein-coding	nan	0.720	0.634	0.086	0.207	0.194	0.047	0.073	0.019	0.037	0.113	0.029	0.273	0.066	0.089	0.397	0.657	0.194	0.256	0.153	0.274	0.125	0.074	0.047	0.107	0.306	0.508	0.185	0.220	0.395	0.172	0.205	0.276	0.655	0.159	0.158	0.194	0.401	0.365	0.021	0.033	0.023	4.339	0.047	0.029	0.024	0.024	0.072	0.046
1937	chr12	50443014	50451841	+	0	NA	Intergenic	Intergenic	-3993	NR_046389	41	Hs.274361	NM_001095	ENSG00000110881	ASIC1	ACCN2|ASIC|BNaC2	acid sensing ion channel subunit 1	protein-coding	nan	0.970	1.037	0.361	0.528	0.292	0.994	0.236	0.118	0.175	0.309	1.068	0.416	0.274	0.023	nan	1.228	0.607	0.964	2.554	nan	2.262	0.726	1.390	1.595	1.011	nan	0.680	nan	6.263	6.165	0.762	1.014	0.824	0.394	1.555	3.000	1.108	0.767	0.134	0.729	0.086	0.161	0.994	1.068	3.513	0.405	0.374	0.738
5542	chr3	130494837	130507812	+	0	NA	Intergenic	L1ME1|LINE|L1	-35628	NM_014602	30849	Hs.149032	NM_014602	ENSG00000196455	PIK3R4	VPS15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	0.974	nan	nan	2.107	1.580	0.795	0.917	0.227	0.163	0.277	0.258	0.479	2.399	0.042	0.084	0.503	0.463	0.355	0.737	0.909	1.213	1.986	0.840	0.278	0.289	0.252	0.452	2.522	4.125	nan	0.266	0.207	0.324	0.397	0.299	0.309	0.558	3.648	1.376	0.849	0.164	0.103	0.508	0.917	0.479	0.030	0.032	0.062	0.156
4274	chr2	27576747	27583877	+	0	NA	promoter-TSS (NM_001318909)	promoter-TSS (NM_001318909)	-411	NM_001521	2976	Hs.75782	NM_001521	ENSG00000115207	GTF3C2	TFIIIC-BETA|TFIIIC110	general transcription factor IIIC subunit 2	protein-coding	4.500	1.919	3.012	2.908	2.673	1.326	2.359	1.200	0.523	1.681	0.776	2.055	6.043	3.822	0.211	3.350	2.780	3.380	5.327	4.287	3.458	5.744	2.750	11.679	12.122	2.720	3.727	6.889	nan	5.100	5.951	1.854	3.064	2.672	2.749	6.935	10.074	2.675	1.345	1.755	2.317	0.319	1.621	2.359	2.055	1.253	1.412	0.888	3.567
5556	chr3	134513397	134529927	+	0	NA	intron (NM_004441, intron 1 of 15)	intron (NM_004441, intron 1 of 15)	7563	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding	1.026	nan	nan	0.852	1.110	0.605	0.661	0.137	0.128	0.189	0.160	0.087	2.513	0.204	0.054	0.354	0.234	1.220	1.641	1.203	0.924	5.656	1.421	0.214	0.210	0.306	0.671	0.874	0.953	nan	0.329	0.377	0.804	0.585	0.493	0.151	0.172	0.225	0.346	0.960	0.335	0.110	0.157	0.661	0.087	0.312	0.025	0.218	0.022
5154	chr21	44830047	44867415	+	0	NA	Intergenic	AluJb|SINE|Alu	-1662	NM_001320643	102724428	Hs.282113	NM_001320643	ENSG00000275993	LOC102724428	-	serine/threonine-protein kinase SIK1	protein-coding	nan	1.735	1.927	0.786	3.454	1.952	0.814	0.253	0.069	0.441	0.251	2.559	3.794	0.194	0.075	1.231	1.780	2.585	4.143	2.911	2.866	nan	0.866	4.378	4.360	0.635	nan	2.857	3.356	1.200	1.182	1.170	1.706	1.522	1.503	0.563	0.683	1.758	0.995	2.532	2.315	0.222	0.381	0.814	2.559	0.205	2.203	0.438	0.116
182	chr1	32210611	32242158	+	0	NA	intron (NM_001294336, intron 1 of 31)	CpG	-2048	NR_036216	100423028		NR_036216	ENSG00000266580	MIR4254	-	microRNA 4254	ncRNA	1.320	nan	1.128	0.771	0.871	0.435	0.847	0.367	0.056	0.384	0.265	0.911	5.976	0.416	0.097	0.930	1.679	3.026	1.751	1.898	1.844	nan	0.379	0.681	0.710	1.641	2.561	1.147	1.870	nan	1.472	0.582	1.118	0.701	0.878	0.880	1.091	0.912	nan	1.726	0.397	0.105	0.294	0.847	0.911	0.456	0.594	0.577	0.177
6681	chr6	26267549	26287598	+	0	NA	Intergenic	MER39|LTR|ERV1	4369	NM_003525	8346	Hs.553506	NM_003525	ENSG00000278588	HIST1H2BI	H2B/k|H2BFK	histone cluster 1 H2B family member i	protein-coding	3.559	1.668	nan	3.544	3.216	1.662	1.247	1.251	0.290	0.619	0.380	1.380	nan	6.347	0.215	5.591	5.625	1.335	nan	3.497	2.385	11.422	3.904	9.311	9.525	1.171	1.632	2.732	4.123	2.668	2.831	0.633	1.090	6.781	5.890	2.442	2.322	2.144	1.280	1.350	4.302	0.961	0.703	1.247	1.380	0.881	1.480	0.651	0.756
3809	chr18	48553783	48559348	+	0	NA	promoter-TSS (NM_005359)	promoter-TSS (NM_005359)	-18	NM_005359	4089	Hs.75862	NM_005359	ENSG00000141646	SMAD4	DPC4|JIP|MADH4|MYHRS	SMAD family member 4	protein-coding	nan	3.024	4.101	4.050	3.512	2.013	5.554	1.536	0.057	1.327	0.634	6.346	6.216	2.018	0.080	5.333	5.403	6.686	10.506	9.138	8.641	8.681	4.413	5.983	5.934	3.001	3.369	3.656	6.958	4.970	4.850	2.550	5.552	7.689	9.667	4.904	nan	5.267	2.752	2.389	2.477	1.813	2.411	5.554	6.346	0.616	1.623	1.458	2.009
6380	chr5	95983337	95999889	+	0	NA	Intergenic	Charlie9|DNA|hAT-Charlie	-6128	NM_001042442	831	Hs.436186	NM_001750	ENSG00000153113	CAST	BS-17|PLACK	calpastatin	protein-coding	nan	2.131	1.808	0.421	0.672	0.254	0.338	0.775	0.203	0.303	0.130	0.239	2.393	0.675	0.117	0.208	0.151	2.929	8.425	0.745	0.470	0.793	0.182	0.681	0.685	0.473	0.787	0.671	1.094	0.558	0.432	0.129	0.204	1.964	2.141	0.282	nan	0.497	0.404	0.568	0.914	0.468	0.110	0.338	0.239	0.082	0.580	0.041	0.105
6371	chr5	93571473	93597562	+	0	NA	intron (NM_001145678, intron 20 of 20)	intron (NM_001145678, intron 20 of 20)	-137113	NM_001163418	83989	Hs.600086	NM_032042	ENSG00000113391	FAM172A	C5orf21	family with sequence similarity 172 member A	protein-coding	nan	1.321	0.679	0.098	0.277	0.104	0.223	0.685	0.150	0.018	0.064	0.005	0.237	4.519	0.104	0.218	0.108	0.204	0.298	0.207	0.243	0.211	0.095	0.126	0.117	0.298	0.424	0.249	0.235	0.361	0.139	0.100	0.120	0.102	0.164	0.245	nan	0.337	0.378	0.032	0.067	0.029	0.024	0.223	0.005	0.012	0.117	0.038	0.052
815	chr1	205299734	205336998	+	0	NA	intron (NM_001271863, intron 2 of 8)	intron (NM_001271863, intron 2 of 8)	7762	NM_018203	55220	Hs.10414	NM_018203	ENSG00000162873	KLHDC8A	-	kelch domain containing 8A	protein-coding	2.217	1.939	2.130	0.251	1.218	0.672	1.671	0.168	0.060	0.566	0.457	0.572	1.018	0.155	0.098	1.016	1.292	0.387	0.790	1.815	1.852	1.498	0.540	nan	nan	1.691	2.288	0.763	1.086	1.827	1.425	0.253	0.350	1.691	1.800	2.092	6.062	1.981	1.040	0.328	0.761	0.632	1.032	1.671	0.572	0.319	0.945	0.069	1.357
3486	chr17	58467400	58471379	+	0	NA	5' UTR (NM_032582, exon 1 of 34)	5' UTR (NM_032582, exon 1 of 34)	197	NM_032582	84669	Hs.132868	NM_032582	ENSG00000170832	USP32	NY-REN-60|USP10	ubiquitin specific peptidase 32	protein-coding	7.503	5.097	5.311	10.012	6.366	3.598	4.401	10.899	0.885	3.854	1.694	5.862	13.286	7.373	0.181	8.696	10.005	5.881	8.949	8.905	7.101	9.425	3.974	nan	11.849	5.772	6.528	11.858	20.324	11.420	11.899	4.354	8.883	6.931	7.672	6.800	10.114	3.328	1.848	2.203	6.436	1.893	3.455	4.401	5.862	1.860	4.564	6.898	3.985
167	chr1	28572742	28588682	+	0	NA	Intergenic	AluSz|SINE|Alu	-5251	NM_031459	83667	Hs.469543	NM_031459	ENSG00000130766	SESN2	HI95|SES2|SEST2	sestrin 2	protein-coding	2.011	1.327	nan	2.110	1.401	0.926	0.487	1.144	0.231	0.640	0.290	0.466	2.862	2.550	0.162	0.709	0.940	1.236	2.090	1.640	1.569	1.871	0.373	2.951	2.998	1.439	2.103	2.477	3.089	1.577	1.461	0.750	1.422	1.124	1.345	1.705	5.694	1.146	0.621	0.759	1.021	0.197	1.206	0.487	0.466	0.353	0.651	0.417	0.388
8126	chr9	37021923	37038474	+	0	NA	intron (NM_001280547, intron 1 of 8)	CpG	4278	NM_001280549	5079	Hs.654464	NM_016734	ENSG00000196092	PAX5	ALL3|BSAP	paired box 5	protein-coding	1.809	nan	1.021	1.282	1.839	0.852	0.545	0.063	0.106	1.347	0.801	2.434	2.318	0.151	0.065	2.891	3.644	0.577	0.847	2.529	2.302	6.624	1.972	1.972	1.884	1.499	2.073	2.618	3.366	1.797	1.812	3.983	6.281	1.102	1.119	0.726	1.010	2.874	2.173	2.557	0.728	0.126	0.756	0.545	2.434	0.162	0.484	2.481	0.151
6442	chr5	124736427	124761383	+	0	NA	Intergenic	Intergenic	-80049	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA	nan	1.581	1.176	0.145	1.499	0.666	0.597	1.301	0.129	0.240	0.223	0.427	1.536	8.191	0.250	0.563	0.615	2.169	nan	0.428	0.487	1.060	0.371	0.739	0.747	1.533	1.884	0.390	0.541	0.643	0.468	0.185	0.322	3.855	4.325	1.217	2.977	0.339	0.288	1.035	0.197	1.186	0.588	0.597	0.427	0.326	0.419	0.111	0.803
5743	chr3	183346661	183356004	+	0	NA	Intergenic	AluY|SINE|Alu	-2079	NM_017644	54800	Hs.407709	NM_017644	ENSG00000114796	KLHL24	DRE1|KRIP6	kelch like family member 24	protein-coding	3.577	3.212	2.611	4.159	3.546	2.164	1.121	1.676	0.363	2.472	1.220	2.191	9.241	1.025	0.106	2.478	2.668	3.191	4.893	4.497	3.523	6.537	2.852	6.264	6.754	1.807	2.274	3.779	6.288	5.913	7.198	1.531	2.256	3.408	3.752	4.356	3.279	2.018	1.242	1.709	3.589	0.530	1.861	1.121	2.191	0.917	1.147	0.954	1.736
3564	chr17	74728933	74737282	+	0	NA	promoter-TSS (NM_001242533)	promoter-TSS (NM_001242533)	386	NR_036608	6427	Hs.584801	NM_003016	ENSG00000161547	SRSF2	PR264|SC-35|SC35|SFRS2|SFRS2A|SRp30b	serine and arginine rich splicing factor 2	protein-coding	5.519	4.510	4.732	6.380	6.962	4.139	3.368	3.459	0.309	3.346	2.142	4.601	12.372	4.421	0.201	8.125	8.112	5.172	7.549	8.163	7.638	7.274	4.298	11.630	12.098	nan	6.598	8.029	10.668	10.981	11.506	4.555	9.368	6.264	6.940	7.220	8.098	nan	1.916	3.186	4.762	1.815	3.380	3.368	4.601	0.785	3.687	2.618	3.077
5933	chr4	73932949	73936981	+	0	NA	intron (NM_001297733, intron 1 of 5)	CpG	511	NM_173827	285521	Hs.356697	NM_173827	ENSG00000163626	COX18	COX18HS	COX18, cytochrome c oxidase assembly factor	protein-coding	5.729	2.180	3.298	6.584	3.730	1.794	3.268	2.287	0.158	1.630	0.750	4.452	4.064	2.224	0.102	8.105	9.115	6.920	9.139	7.488	6.008	10.421	5.066	17.038	17.598	3.232	4.031	11.178	20.131	7.876	9.661	2.892	4.497	5.734	5.328	5.791	5.132	4.136	2.329	2.088	3.995	0.544	2.634	3.268	4.452	0.410	2.953	1.673	1.751
4971	chr20	45940478	45956329	+	0	NA	non-coding (NR_024594, exon 1 of 1)	non-coding (NR_024594, exon 1 of 1)	1157	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA	nan	nan	1.109	3.137	2.778	1.376	1.380	0.812	0.137	0.820	0.369	3.363	9.376	0.852	0.094	1.520	1.829	2.184	6.166	2.892	2.736	nan	0.973	1.247	1.261	1.338	1.671	5.690	9.427	nan	0.658	2.147	3.245	1.211	1.315	0.543	0.982	1.081	0.707	2.923	2.944	0.251	0.875	1.380	3.363	1.041	0.203	2.193	0.235
8119	chr9	35769774	35779847	+	0	NA	Intergenic	Intergenic	-17596	NM_003995	4882	Hs.78518	NM_000907	ENSG00000159899	NPR2	AMDM|ANPRB|ANPb|ECDM|GUC2B|GUCY2B|NPRB|NPRBi|SNSK	natriuretic peptide receptor 2	protein-coding	1.060	nan	1.279	2.847	2.952	1.344	1.458	0.334	0.143	1.824	1.198	4.041	4.825	0.074	0.122	0.459	0.509	0.410	0.531	2.985	3.800	5.891	2.108	0.477	0.406	1.311	1.672	4.993	4.507	1.292	1.032	0.514	0.721	2.773	3.199	0.517	1.994	6.228	2.803	2.121	2.191	0.976	1.761	1.458	4.041	0.278	2.882	0.424	0.316
1174	chr10	86080952	86113580	+	0	NA	intron (NM_001284241, intron 1 of 2)	L2a|LINE|L2	8921	NM_001284241	54462	Hs.461988	NM_018999	ENSG00000107771	CCSER2	FAM190B|Gcap14|KIAA1128|bA486O22.1	coiled-coil serine rich protein 2	protein-coding	1.018	0.788	0.992	3.318	0.905	0.471	0.188	0.284	0.094	0.150	0.160	0.379	0.643	0.266	0.076	0.388	0.413	0.487	0.746	0.552	0.667	1.657	0.529	0.357	0.357	0.871	1.194	3.097	3.536	1.121	0.962	0.165	0.385	0.241	0.239	0.690	1.667	0.592	0.367	0.097	0.252	0.044	0.202	0.188	0.379	0.081	0.361	0.100	0.527
510	chr1	148232601	148248809	+	0	NA	intron (NM_001037501, intron 6 of 19)	intron (NM_001037501, intron 6 of 19)	-38169	NM_001164261	645142	Hs.730589	NM_001164261	ENSG00000256374	PPIAL4D	-	peptidylprolyl isomerase A like 4D	protein-coding	2.192	nan	1.860	1.873	0.681	0.445	1.309	0.439	0.178	1.325	0.961	1.531	6.748	1.603	0.132	2.327	2.938	1.226	1.519	2.849	2.360	2.639	1.570	3.640	3.721	0.917	1.124	2.989	3.673	2.425	2.602	4.041	5.449	1.695	1.410	2.543	5.837	0.975	0.706	1.229	2.217	0.460	0.463	1.309	1.531	0.419	2.579	1.921	1.305
8338	chr9	139500420	139525220	+	0	NA	Intergenic	Intergenic	-1187	NR_135288	401561	Hs.609301	NR_135288	ENSG00000279141	LINC01451	HCCAT4	long intergenic non-protein coding RNA 1451	ncRNA	nan	0.702	1.229	0.425	0.296	0.188	0.356	0.214	0.091	0.089	0.104	0.126	1.324	0.141	0.053	0.627	1.155	0.303	0.634	2.785	2.352	nan	0.160	0.384	0.466	0.125	0.244	0.437	0.777	1.296	1.150	1.008	1.347	0.356	0.306	0.152	0.193	0.930	0.545	6.256	0.283	0.052	0.144	0.356	0.126	1.797	0.229	0.748	0.035
393	chr1	87617072	87622643	+	0	NA	intron (NR_026989, intron 2 of 2)	intron (NR_026989, intron 2 of 2)	22248	NR_026985	339524	Hs.306423	NM_207357	ENSG00000267272	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA	2.130	nan	nan	0.412	0.381	0.375	0.507	0.148	0.143	0.337	0.060	1.168	0.556	0.073	0.073	4.089	5.269	9.344	11.099	0.454	0.476	0.429	0.154	0.901	0.965	0.342	0.696	1.571	1.964	0.457	0.288	5.676	9.987	1.817	2.171	0.568	1.249	0.511	0.593	0.109	0.110	0.171	0.284	0.507	1.168	0.030	0.040	7.298	0.647
6482	chr5	142592947	142612414	+	0	NA	3' UTR (NM_001135608, exon 23 of 23)	3' UTR (NM_001135608, exon 23 of 23)	30615	NR_046816	100874372	Hs.666717	NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA	nan	1.139	0.688	0.709	0.544	0.305	0.637	0.306	0.091	0.120	0.113	0.566	3.382	0.089	0.101	0.187	0.253	0.252	0.361	2.641	2.262	0.807	0.384	0.266	0.281	1.274	1.641	2.206	2.314	0.457	0.414	0.325	0.582	0.345	0.326	0.255	0.610	1.066	0.765	0.818	4.078	0.095	0.139	0.637	0.566	0.295	0.511	0.768	0.120
8271	chr9	127622383	127633661	+	0	NA	intron (NM_030978, intron 2 of 5)	AluSx1|SINE|Alu	3625	NM_030978	81873	Hs.132499	NM_030978	ENSG00000136950	ARPC5L	ARC16-2	actin related protein 2/3 complex subunit 5 like	protein-coding	nan	nan	3.479	4.270	3.173	1.487	3.105	1.849	0.483	1.698	0.836	3.747	nan	2.993	0.215	2.786	2.674	4.866	7.531	5.473	5.005	4.078	1.833	9.079	9.005	2.076	nan	5.642	9.100	7.229	7.947	2.277	3.845	4.017	4.498	4.447	4.673	nan	1.438	3.045	1.799	0.573	0.956	3.105	3.747	0.932	3.161	0.613	1.566
5892	chr4	49156059	49157084	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	167912	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding	16.352	21.384	17.408	9.714	11.622	6.855	11.407	4.722	27.504	5.761	13.762	5.194	18.387	4.820	13.804	10.066	4.126	3.905	4.892	8.081	13.474	3.575	2.845	5.056	5.062	8.393	12.933	4.666	5.234	11.764	3.642	3.917	5.670	3.326	5.966	4.398	7.540	4.253	6.668	1.359	9.475	4.782	2.466	11.407	5.194	2.061	3.979	2.879	3.060
658	chr1	170652391	170673120	+	0	NA	intron (NM_006902, intron 1 of 4)	intron (NM_006902, intron 1 of 4)	29442	NM_022716	5396	Hs.283416	NM_006902	ENSG00000116132	PRRX1	AGOTC|PHOX1|PMX1|PRX-1|PRX1	paired related homeobox 1	protein-coding	nan	nan	nan	0.149	0.142	0.101	0.284	4.315	0.348	0.076	0.101	0.040	0.291	0.047	0.094	0.304	0.194	0.449	0.586	nan	0.560	0.122	0.069	0.073	0.059	3.183	3.518	0.333	0.312	0.484	0.285	0.264	0.457	0.063	0.078	0.531	nan	0.194	0.396	0.048	0.308	0.014	0.023	0.284	0.040	0.009	0.049	0.081	0.244
3262	chr17	7460460	7466498	+	0	NA	exon (NM_001198622, exon 3 of 5)	exon (NM_001198622, exon 3 of 5)	-1830	NM_015670	26168	Hs.513926	NM_015670	ENSG00000161956	SENP3	SMT3IP1|SSP3|Ulp1	SUMO1/sentrin/SMT3 specific peptidase 3	protein-coding	3.396	2.292	2.220	2.258	2.689	1.726	2.988	1.313	0.106	1.427	0.757	3.984	4.396	6.321	0.372	4.043	4.817	2.937	4.505	4.251	3.902	5.876	2.176	4.618	4.588	2.126	3.082	6.971	8.219	1.588	1.835	1.674	2.142	1.979	2.079	2.555	3.897	2.094	0.890	4.755	1.161	0.368	0.534	2.988	3.984	0.996	4.999	0.558	1.598
274	chr1	44113441	44119800	+	0	NA	intron (NM_014663, intron 1 of 21)	intron (NM_014663, intron 1 of 21)	823	NM_014663	9682	Hs.155983	NM_014663	ENSG00000066135	KDM4A	JHDM3A|JMJD2|JMJD2A|TDRD14A	lysine demethylase 4A	protein-coding	nan	1.745	nan	1.931	2.633	1.223	1.041	1.533	0.252	2.316	0.972	3.274	5.931	3.260	0.167	2.833	3.173	3.466	4.409	4.897	4.487	2.617	1.082	7.176	7.272	2.651	nan	nan	11.833	3.325	3.005	3.873	nan	1.498	1.266	2.717	3.614	2.262	1.131	1.245	1.891	0.435	1.046	1.041	3.274	0.671	1.022	3.753	0.836
4786	chr2	240142148	240188190	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-48016	NR_026664	85009	Hs.744565	NM_032923		MGC16025	-	uncharacterized LOC85009	ncRNA	0.917	nan	1.318	0.651	0.798	0.432	0.380	0.055	0.052	0.422	0.213	0.845	3.035	0.113	0.105	1.159	1.476	0.680	0.966	1.100	0.971	0.847	0.250	0.757	0.807	0.636	0.908	3.486	3.637	0.363	0.264	0.882	1.050	0.170	0.267	0.150	0.249	0.930	0.609	5.352	3.393	0.033	0.062	0.380	0.845	0.137	1.770	0.293	0.051
877	chr1	221880247	221926947	+	0	NA	intron (NR_111940, intron 1 of 2)	intron (NR_111940, intron 1 of 2)	6645	NR_111939	11221	Hs.497822	NM_007207	ENSG00000143507	DUSP10	MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	2.421	nan	2.892	1.416	2.198	1.115	1.159	0.122	0.103	2.271	0.834	2.608	2.286	0.051	0.117	0.852	0.756	2.242	3.703	2.851	nan	3.342	2.596	2.684	2.922	1.299	1.537	2.865	3.974	1.389	1.474	0.200	0.229	2.922	3.265	2.352	5.218	2.320	1.350	0.333	0.332	0.687	0.752	1.159	2.608	0.141	1.144	0.055	2.113
7612	chr8	20390336	20404142	+	0	NA	Intergenic	AluY|SINE|Alu	263955	NR_047509	100874051	Hs.385799	NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	ncRNA	nan	1.415	nan	0.039	0.822	0.429	0.352	0.059	0.035	0.298	0.217	0.028	0.669	0.016	0.125	0.447	0.552	0.113	0.149	nan	1.285	nan	0.464	0.120	0.140	0.250	0.354	1.065	1.167	0.397	0.296	0.229	0.210	0.295	0.329	0.170	0.291	nan	nan	1.555	0.136	0.048	0.080	0.352	0.028		0.169	0.043	0.090
1508	chr11	71810486	71824917	+	0	NA	3' UTR (NM_001330321, exon 6 of 6)	3' UTR (NM_001330321, exon 6 of 6)	-3268	NM_017907	55004	Hs.731528	NM_017907	ENSG00000149357	LAMTOR1	C11orf59|PDRO|Ragulator1|p18|p27RF-Rho	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding	nan	2.009	1.736	3.099	3.006	1.721	2.349	1.567	0.089	1.139	0.624	2.861	5.573	1.947	0.104	4.956	4.456	3.899	5.914	5.656	5.583	4.927	2.223	11.065	12.108	3.385	4.434	4.890	6.259	3.805	3.512	2.956	3.828	3.183	4.097	2.349	3.118	2.662	1.313	2.704	2.301	0.596	2.139	2.349	2.861	0.876	2.449	1.192	0.986
1771	chr12	3436578	3453917	+	0	NA	Intergenic	MER110A|LTR|ERV1	-45268	NM_001256536	56341	Hs.504530	NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding	1.056	nan	nan	1.184	0.418	0.176	1.007	0.075	0.074	0.257	0.244	0.510	6.156	0.068	0.097	0.286	0.193	0.120	0.121	nan	1.114	2.104	0.633	0.264	0.274	0.238	0.464	1.972	2.176	0.713	0.654	0.319	0.450	0.232	0.287	0.773	nan	1.267	0.745	2.357	0.129	0.033	0.091	1.007	0.510	0.095	0.528	0.069	0.570
1128	chr10	65386847	65393533	+	0	NA	Intergenic	CpG	-108355	NM_001322258	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding	2.340	nan	3.161	2.129	2.081	1.355	1.568	3.724	0.220	1.642	0.707	1.201	12.357	5.172	0.091	1.420	2.190	3.610	8.146	1.820	1.525	3.498	0.771	1.129	0.906	3.098	3.677	2.911	4.691	1.693	1.754	0.511	1.477	3.088	2.762	1.794	nan	1.937	0.912	4.066	1.485	1.077	0.378	1.568	1.201	0.569	4.884	1.326	1.832
7407	chr7	100805253	100827361	+	0	NA	intron (NM_198571, intron 3 of 3)	CpG	7250	NM_198571	375607	Hs.213044	NM_198571	ENSG00000167011	NAT16	C7orf52	N-acetyltransferase 16 (putative)	protein-coding	nan	1.655	1.106	0.884	1.447	0.774	2.583	0.091	0.105	1.020	0.433	0.806	4.242	0.260	0.150	1.600	2.030	0.367	0.617	1.649	1.265	2.783	0.934	0.256	0.282	0.815	1.247	1.609	1.954	0.910	0.840	0.554	0.713	1.304	1.112	0.198	nan	2.578	1.345	2.699	3.875	0.198	0.285	2.583	0.806	0.567	1.879	0.192	0.114
5297	chr22	46078820	46096106	+	0	NA	intron (NM_013236, intron 2 of 11)	intron (NM_013236, intron 2 of 11)	19785	NM_013236	25814	Hs.475125	NM_013236	ENSG00000130638	ATXN10	E46L|HUMEEP|SCA10	ataxin 10	protein-coding	0.805	0.619	nan	0.155	0.357	0.335	0.206	0.614	0.131	0.100	0.132	0.099	0.309	0.402	0.151	0.321	0.356	1.765	6.737	0.382	0.440	0.293	0.160	0.583	0.492	0.553	0.810	0.369	0.481	0.403	0.226	0.248	0.265	0.141	0.197	0.219	0.437	0.441	0.492	0.044	0.103	0.039	0.096	0.206	0.099	0.044	0.053	0.080	0.122
8323	chr9	137230761	137252075	+	0	NA	intron (NM_002957, intron 1 of 9)	intron (NM_002957, intron 1 of 9)	23109	NM_002957	6256	Hs.590886	NM_002957	ENSG00000186350	RXRA	NR2B1	retinoid X receptor alpha	protein-coding	nan	0.564	1.157	0.083	0.339	0.167	0.370	0.397	0.113	0.037	0.061	0.185	1.614	0.131	0.035	0.697	1.353	0.265	0.595	0.620	0.553	nan	0.043	0.231	0.315	0.649	0.972	0.218	0.203	3.235	3.776	0.695	0.626	0.359	0.377	0.303	0.263	0.414	0.440	0.816	0.025	0.054	0.011	0.370	0.185	0.959	0.110	0.117	0.035
4737	chr2	224400722	224431271	+	0	NA	Intergenic	L1PA13|LINE|L1	51221	NM_003469	7857	Hs.516726	NM_003469	ENSG00000171951	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding	nan	1.485	1.460	1.260	2.260	1.243	2.251	0.307	0.089	1.349	0.538	1.225	nan	0.075	0.132	0.417	0.316	0.510	1.790	0.877	0.874	5.580	2.120	0.436	0.436	1.356	2.036	2.267	nan	0.383	0.169	0.145	0.309	2.840	4.252	0.332	nan	2.000	0.968	0.536	0.394	0.599	0.161	2.251	1.225	0.159	1.629	0.068	0.126
3515	chr17	69418500	69436050	+	0	NA	Intergenic	Intergenic	-228955	NR_104152	101928165	Hs.407613	NR_104152	ENSG00000260785	CASC17	LINC00600	cancer susceptibility candidate 17 (non-protein coding)	ncRNA	0.901	nan	0.521	0.404	6.101	3.322	0.433	0.277	0.083	0.491	0.389	2.422	3.780	0.074	0.134	0.522	0.410	0.317	0.981	1.660	1.839	2.510	0.828	0.245	0.234	0.658	nan	0.706	0.700	0.722	0.329	0.183	0.398	1.074	2.161	0.131	0.194	0.943	0.607	0.278	1.081	0.318	0.045	0.433	2.422	0.100	0.086	0.129	0.028
4074	chr19	41912377	41935315	+	0	NA	intron (NM_000709, intron 4 of 8)	AluSp|SINE|Alu	10789	NM_198540	374907	Hs.441681	NM_198540	ENSG00000177191	B3GNT8	B3GALT7|BGALT15|beta3Gn-T8	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	0.895	0.689	0.847	1.218	0.459	0.216	0.190	0.141	0.077	0.245	0.122	0.807	0.291	0.105	0.081	0.392	0.688	0.338	0.539	1.842	2.183	1.465	0.356	0.751	0.815	0.280	0.564	6.102	4.958	0.413	0.249	0.391	0.589	0.393	0.363	0.309	0.437	1.044	0.521	6.288	3.020	0.136	0.070	0.190	0.807	0.251	0.768	0.138	0.060
5586	chr3	142715740	142724032	+	0	NA	promoter-TSS (NM_001320219)	promoter-TSS (NM_001320219)	423	NR_034032	100289361	Hs.599649	NR_034032	ENSG00000268129	LOC100289361	-	uncharacterized LOC100289361	ncRNA	5.287	nan	nan	3.399	2.706	1.596	2.164	2.282	0.164	2.091	0.843	2.019	2.553	2.184	0.078	3.168	2.719	3.933	5.159	3.250	3.123	nan	3.926	9.257	9.853	3.465	nan	2.672	nan	nan	7.606	1.992	3.830	1.993	2.675	4.859	4.707	2.488	1.623	0.979	1.016	0.310	1.897	2.164	2.019	0.680	1.311	0.905	1.272
1724	chr11	126918742	126952463	+	0	NA	Intergenic	AluSg|SINE|Alu	-1295	NR_120578	101929473	Hs.737523	NR_120578	ENSG00000255087	LOC101929473	-	uncharacterized LOC101929473	ncRNA	0.563	1.691	0.872	0.440	1.198	0.604	1.043	0.033	0.014	0.343	0.181	0.430	0.851	0.029	0.107	0.665	0.497	0.167	0.248	0.671	0.794	4.154	0.986	0.117	0.130	0.219	0.285	1.378	1.173	0.543	0.455	0.723	0.826	1.592	1.711	0.200	nan	2.701	1.565	0.110	0.363	0.360	0.091	1.043	0.430	0.044	0.051	0.258	0.098
7452	chr7	116055052	116200835	+	0	NA	Intergenic	Intergenic	-11712	NM_001206747	858	Hs.212332	NM_001233	ENSG00000105971	CAV2	CAV	caveolin 2	protein-coding	nan	0.554	0.688	0.115	0.186	0.114	0.075	1.201	0.170	0.130	0.168	0.090	0.384	8.824	0.304	0.410	0.263	0.321	0.586	0.179	0.240	0.139	0.073	0.308	0.340	0.632	0.854	0.216	0.265	0.425	0.208	0.250	0.397	0.080	0.110	0.185	0.345	0.526	0.629	0.040	0.159	0.026	0.040	0.075	0.090	0.017	0.041	0.097	0.073
6835	chr6	65781127	65792932	+	0	NA	intron (NM_001292009, intron 12 of 43)	intron (NM_001292009, intron 12 of 43)	-224282	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding	nan	0.854	0.640	0.080	0.200	0.081	0.163	0.134	0.074	0.427	0.322	0.030	0.229	0.064	0.139	0.353	0.286	0.203	0.142	0.247	0.221	0.663	0.200	0.219	0.224	0.233	0.161	0.201	0.225	0.450	0.149	0.107	0.186	8.052	7.758	0.233	0.443	0.260	0.210	0.024	0.052	2.237	0.041	0.163	0.030	0.017	0.017	0.075	0.084
3965	chr19	11028093	11054356	+	0	NA	TTS (NM_138358)	TTS (NM_138358)	-1536	NM_024029	78992	Hs.164026	NM_024029	ENSG00000130733	YIPF2	FinGER2	Yip1 domain family member 2	protein-coding	1.447	1.894	1.813	1.242	0.941	0.533	0.585	0.305	0.153	0.586	0.372	1.385	2.282	0.351	0.078	0.973	1.136	1.370	1.891	1.721	1.804	4.096	1.853	1.454	1.593	0.682	1.066	4.490	4.854	1.358	0.973	0.487	0.731	0.943	1.296	0.680	1.379	1.523	0.824	0.974	0.728	0.264	0.328	0.585	1.385	0.275	0.700	0.218	0.227
4056	chr19	39887924	39906343	+	0	NA	promoter-TSS (NM_003407)	promoter-TSS (NM_003407)	-354	NM_003407	7538	Hs.534052	NM_003407	ENSG00000128016	ZFP36	G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36	ZFP36 ring finger protein	protein-coding	3.022	3.311	3.816	5.695	3.512	1.891	2.698	2.522	0.375	1.085	0.496	3.657	12.228	5.383	0.161	2.141	3.150	2.883	4.506	4.467	3.829	5.362	2.856	9.301	9.601	1.894	2.473	5.354	8.615	nan	1.990	2.018	2.954	2.946	3.037	1.984	4.013	2.648	1.283	3.366	2.419	0.658	1.355	2.698	3.657	1.325	3.011	1.402	1.736
5127	chr21	40683717	40691747	+	0	NA	promoter-TSS (NR_046655)	promoter-TSS (NR_046655)	99	NR_046655	100874093	Hs.588102	NR_046655	ENSG00000238141	BRWD1-AS1	-	BRWD1 antisense RNA 1	ncRNA	nan	2.262	5.846	4.031	3.918	2.158	4.094	1.368	0.263	1.272	0.767	4.482	10.427	2.661	0.141	4.780	4.218	3.769	4.657	6.409	5.763	nan	1.385	8.836	9.193	2.460	nan	5.674	9.509	6.386	6.162	2.846	4.793	4.908	4.565	3.824	3.959	2.499	1.689	1.954	4.877	1.552	2.694	4.094	4.482	1.075	2.042	1.527	2.013
250	chr1	40767952	40774540	+	0	NA	intron (NM_001852, intron 21 of 31)	MIR3|SINE|MIR	11693	NM_001852	1298	Hs.418012	NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding	10.792	0.680	nan	1.618	0.790	0.319	0.481	0.230	0.074	0.260	0.251	0.255	0.568	0.166	0.070	0.404	0.494	0.284	0.427	1.797	1.361	0.370	0.205	0.600	0.531	0.515	nan	nan	1.702	0.880	1.108	0.367	nan	0.395	0.519	0.369	0.728	2.046	1.362	0.194	0.108	0.029	15.656	0.481	0.255	0.220	0.097	0.076	0.121
2148	chr12	113657685	113688463	+	0	NA	intron (NM_017901, intron 2 of 27)	intron (NM_017901, intron 2 of 27)	-8992	NM_001301214	53373	Hs.524763	NM_017901	ENSG00000186815	TPCN1	TPC1	two pore segment channel 1	protein-coding	nan	nan	2.883	1.156	0.753	0.463	0.986	2.110	0.376	0.601	0.340	1.634	3.941	0.281	0.110	1.431	1.930	0.711	1.756	nan	nan	nan	1.375	2.937	3.190	1.452	2.049	nan	nan	1.891	1.823	0.574	0.965	1.067	1.467	0.892	1.267	nan	1.305	4.012	2.553	0.201	0.518	0.986	1.634	1.085	2.535	0.458	0.350
6019	chr4	132144618	132156891	+	0	NA	Intergenic	Intergenic	-535239	NR_125883	101927305	Hs.507924	NR_125883		LOC101927305	-	uncharacterized LOC101927305	ncRNA	nan	nan	0.380	0.129	0.173	0.157	0.041	0.055	0.013	0.078	0.068	0.117	0.123	0.053	0.067	0.272	0.184	0.125	0.109	0.174	0.254	0.094	0.070	0.075	0.140	5.343	5.844	0.214	0.224	0.255	0.136	0.161	0.247	0.041	0.063	0.151	nan	0.109	0.131	0.004	0.065	0.008	0.078	0.041	0.117	0.040	0.032	0.072	0.010
2959	chr15	76618838	76635029	+	0	NA	Intergenic	MIR|SINE|MIR	-2132	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding	1.386	1.066	1.261	0.126	0.412	0.247	0.809	0.659	0.100	0.137	0.134	0.333	1.248	1.000	0.060	1.865	1.681	1.440	1.816	0.951	0.670	1.378	0.375	1.876	2.027	0.811	1.104	0.166	0.220	2.891	2.687	1.667	2.804	1.551	1.033	4.105	5.757	0.742	0.490	0.152	0.094	0.441	0.622	0.809	0.333	0.408	0.038	0.981	2.162
130	chr1	21645159	21673259	+	0	NA	intron (NM_001113348, intron 1 of 18)	(GGGGA)n|Simple_repeat|Simple_repeat	12825	NM_001113348	1889	Hs.195080	NM_001397	ENSG00000117298	ECE1	ECE	endothelin converting enzyme 1	protein-coding	1.981	1.501	nan	1.681	1.782	0.822	1.625	0.882	0.241	0.396	0.301	0.775	2.257	0.392	0.097	0.897	1.424	0.686	1.403	2.487	2.568	1.144	0.367	1.056	1.155	1.141	1.866	3.484	3.751	0.881	0.724	0.587	0.815	0.555	0.661	0.862	1.695	1.361	0.777	3.490	0.997	0.166	0.308	1.625	0.775	0.699	1.194	0.587	0.354
1373	chr11	33276633	33282019	+	0	NA	promoter-TSS (NM_001278162)	promoter-TSS (NM_001278162)	458	NM_005734	10114	Hs.201918	NM_005734	ENSG00000110422	HIPK3	DYRK6|FIST3|PKY|YAK1	homeodomain interacting protein kinase 3	protein-coding	5.115	4.507	nan	6.752	5.292	2.795	4.588	2.806	0.092	2.513	0.983	5.441	11.633	7.461	0.208	6.795	7.416	7.699	11.316	11.274	10.024	11.785	4.396	12.826	12.796	6.254	7.740	4.746	9.076	7.194	10.669	4.048	9.572	11.047	9.927	7.682	nan	2.818	1.740	3.236	5.173	2.250	4.120	4.588	5.441	2.601	3.068	1.805	2.839
53	chr1	7425599	7451916	+	0	NA	intron (NM_015215, intron 5 of 22)	L1MB5|LINE|L1	-392572	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle associated membrane protein 3	protein-coding	1.019	nan	0.944	2.572	1.130	0.627	0.727	0.148	0.067	0.426	0.212	0.900	5.662	0.057	0.096	0.580	0.760	0.172	0.329	1.758	1.845	1.486	0.471	0.237	0.212	0.285	nan	nan	4.577	nan	0.343	1.484	1.783	0.490	0.594	0.372	0.619	1.241	0.815	5.220	1.622	0.116	0.154	0.727	0.900	0.315	0.964	0.840	0.137
2925	chr15	68493493	68527375	+	0	NA	intron (NM_017882, intron 2 of 6)	intron (NM_017882, intron 2 of 6)	11646	NM_017882	54982	Hs.584921	NM_017882	ENSG00000128973	CLN6	CLN4A|HsT18960|nclf	ceroid-lipofuscinosis, neuronal 6, late infantile, variant	protein-coding	1.235	1.060	nan	0.420	0.687	0.282	0.542	0.493	0.138	0.341	0.251	0.619	1.099	0.352	0.085	1.328	1.291	1.016	1.217	0.782	0.750	nan	0.402	1.123	1.019	1.025	1.504	0.635	0.961	2.058	2.448	0.843	1.392	0.475	0.452	1.706	4.018	0.640	0.462	0.233	0.643	0.096	0.249	0.542	0.619	0.404	0.274	0.398	1.168
5591	chr3	144905737	144916763	+	0	NA	Intergenic	L1MCc|LINE|L1	968032	NM_000935	5352	Hs.477866	NM_000935	ENSG00000152952	PLOD2	BRKS2|LH2|TLH	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein-coding	1.193	nan	nan	1.145	1.091	0.642	0.164	0.156	0.083	0.403	0.353	0.036	0.209		0.078	0.295	0.163	1.089	0.752	0.242	0.380	6.356	3.018	0.241	0.200	0.968	nan	0.313	nan	nan	0.779	0.172	0.181	0.338	0.162	1.035	2.750	0.652	0.624	0.030	0.049	0.052	0.130	0.164	0.036	0.026	0.129	0.099	0.550
5329	chr3	15350892	15375966	+	0	NA	intron (NM_001018009, intron 2 of 8)	intron (NM_001018009, intron 2 of 8)	10707	NM_004844	9467	Hs.257761	NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding	nan	2.014	1.489	1.225	0.691	0.302	1.201	0.616	0.161	0.757	0.426	1.417	1.829	0.164	0.070	0.229	0.257	0.474	0.904	1.059	1.324	2.017	0.598	0.583	0.583	0.487	0.800	5.161	6.091	0.804	0.637	0.285	0.309	1.179	1.164	0.193	0.430	0.842	0.479	1.059	0.170	0.225	0.069	1.201	1.417	0.161	1.191	0.035	0.138
4966	chr20	45311395	45339851	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-7347	NM_033550	112858	Hs.440263	NM_033550	ENSG00000172315	TP53RK	BUD32|C20orf64|Nori-2|Nori-2p|PRPK|dJ101A2	TP53 regulating kinase	protein-coding	nan	nan	1.226	0.542	0.964	0.394	0.877	0.736	0.131	0.255	0.145	0.980	2.105	0.687	0.119	2.526	3.154	0.911	1.907	1.148	1.069	nan	1.538	1.012	1.140	0.759	1.073	1.697	2.814	nan	1.484	3.106	2.661	0.206	0.181	2.052	2.888	0.540	0.473	0.309	1.122	0.040	0.596	0.877	0.980	0.254	0.415	1.073	0.613
7284	chr7	52684860	52699012	+	0	NA	Intergenic	L1M5|LINE|L1	-411413	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin like 12	protein-coding	nan	1.096	0.866	0.037	0.150	0.052	0.340	0.117	0.080	0.079	0.110	0.093	0.319	0.039	0.143	0.532	0.389	1.389	0.940	0.429	0.433	0.109	0.093	0.056	0.070	0.123	0.305	1.132	0.902	0.316	0.154	0.062	0.107	0.054	0.099	0.284	0.666	0.271	0.307	3.992	0.051	0.014	0.032	0.340	0.093		0.065	0.049	0.080
6724	chr6	34051068	34090161	+	0	NA	intron (NM_001256809, intron 1 of 8)	MIRc|SINE|MIR	3145	NM_001256813	2914	Hs.429018	NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding	nan	0.891	nan	0.824	0.399	0.222	0.400	0.087	0.090	0.151	0.118	1.223	0.815	0.057	0.088	0.614	1.184	0.149	nan	nan	1.338	1.329	0.387	0.182	0.222	0.290	0.528	4.010	4.610	1.318	1.278	0.498	0.509	0.451	0.501	0.813	1.982	0.728	0.527	0.764	0.616	0.071	0.201	0.400	1.223	0.289	0.070	0.162	0.492
7581	chr8	5818522	5836411	+	0	NA	Intergenic	MER132|DNA|TcMar	436603	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	ncRNA	0.451	1.104	0.510	0.295	0.144	0.098	0.150	0.100	0.036	0.125	0.161	1.239	1.424	0.055	0.110	0.320	0.159	0.223	0.296	2.141	2.279	0.804	0.132	0.202	0.157	0.447	0.657	0.463	0.497	nan	0.338	0.035	0.085	0.035	0.087	0.153	0.204	1.228	0.972	3.377	0.675	0.011	0.044	0.150	1.239	0.017	0.096	0.022	0.055
5905	chr4	54871989	54885626	+	0	NA	intron (NM_012110, intron 5 of 5)	intron (NM_012110, intron 5 of 5)	-25358	NR_027153	402176	Hs.452943	NM_001011538		RPL21P44	RPL21_17_477	ribosomal protein L21 pseudogene 44	pseudo	nan	0.607	0.484	0.242	0.413	0.224	0.797	0.188	0.023	1.347	0.803	0.333	0.208	0.073	0.051	0.457	0.445	0.717	1.047	0.219	0.359	8.579	4.194	0.368	0.272	0.495	0.757	1.746	1.745	0.413	0.154	0.335	0.436	0.911	0.586	0.177	0.402	1.886	1.123	0.020	0.244	0.116	0.116	0.797	0.333	0.007	0.278	0.052	0.036
4517	chr2	140547534	140551565	+	0	NA	Intergenic	Intergenic	794705	NR_106979	102465692		NR_106979	ENSG00000283506	MIR7157	hsa-mir-7157	microRNA 7157	ncRNA	0.839	nan	0.951	0.131	0.222	0.074	0.158	0.055	0.079	0.116	0.147	0.289	0.368		0.108	0.306	0.158	0.568	0.383	1.340	1.634	0.722	0.198	0.081	0.096	3.381	3.239	0.553	0.369	0.546	0.439	0.119	0.230	34.868	33.660	0.504	0.637	0.287	0.425	0.137	0.045	9.287	0.238	0.158	0.289	0.048	0.050	0.024	0.091
2392	chr13	99133278	99149964	+	0	NA	intron (NM_001032296, intron 2 of 10)	intron (NM_001032296, intron 2 of 10)	32758	NM_003576	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding	1.180	2.055	1.343	0.684	0.487	0.297	0.798	0.917	0.116	0.075	0.100	0.508	2.003	0.142	0.067	1.363	1.978	0.555	1.308	0.906	0.907	1.744	0.581	0.692	0.678	0.328	nan	1.770	2.350	0.820	0.853	2.960	5.316	0.856	1.267	0.741	nan	0.354	0.253	2.350	1.437	0.090	0.752	0.798	0.508	0.240	0.529	4.867	0.255
3313	chr17	18085129	18088720	+	0	NA	promoter-TSS (NM_017758)	promoter-TSS (NM_017758)	57	NM_017758	54890	Hs.744130	NM_017758	ENSG00000091542	ALKBH5	ABH5|OFOXD|OFOXD1	alkB homolog 5, RNA demethylase	protein-coding	5.826	3.080	4.852	3.279	8.493	5.025	5.643	2.482	0.493	1.009	0.876	5.011	8.558	5.104	0.124	5.640	7.608	6.246	nan	9.770	8.971	4.700	2.098	6.846	6.512	4.269	5.282	8.674	9.729	nan	8.486	2.778	5.879	2.733	2.912	4.965	8.130	1.758	0.875	2.923	3.618	0.557	3.794	5.643	5.011	2.301	7.870	1.513	3.954
1824	chr12	10867800	10878412	+	0	NA	intron (NM_001145426, intron 1 of 8)	intron (NM_001145426, intron 1 of 8)	2847	NM_001145426	8531	Hs.221889	NM_003651	ENSG00000060138	YBX3	CSDA|CSDA1|DBPA|ZONAB	Y-box binding protein 3	protein-coding	1.055	1.595	0.920	2.061	0.194	0.060	0.254	1.159	0.076	0.991	0.519	0.056	2.759	1.923	0.124	0.468	0.455	3.151	6.445	nan	0.799	1.289	0.404	14.324	14.601	1.271	1.813	2.262	4.364	2.501	3.080	0.525	1.450	0.071	0.104	2.478	3.471	0.743	0.657	0.105	0.115		0.008	0.254	0.056	0.386	0.583	0.475	1.303
4135	chr19	49997928	50001763	+	0	NA	intron (NM_001015, intron 1 of 4)	intron (NM_001015, intron 1 of 4)	223	NM_001015	6205	Hs.433529	NM_001015	ENSG00000142534	RPS11	S11	ribosomal protein S11	protein-coding	5.869	3.360	5.490	4.398	9.887	4.984	3.958	2.136	0.696	2.248	1.216	5.111	7.508	5.347	0.270	5.909	5.192	6.279	9.320	9.804	10.282	13.450	8.665	23.443	25.912	5.815	7.703	10.926	15.061	11.868	12.120	4.323	7.016	6.142	8.484	6.913	9.693	5.370	2.531	3.925	4.114	1.072	2.357	3.958	5.111	1.903	2.824	2.058	3.949
5633	chr3	164592356	164601580	+	0	NA	Intergenic	LTR27B|LTR|ERV1	-47700	NR_126405	104355289	Hs.574909	NR_126405	ENSG00000241767	LINC01324	-	long intergenic non-protein coding RNA 1324	ncRNA	0.972	1.007	0.788	0.087	0.291	0.246	0.042	0.155	0.122	0.188	0.244	0.065	0.171	0.024	0.053	0.301	0.209	0.180	0.275	0.385	0.317	0.533	0.315	0.296	0.268	7.309	7.315	nan	0.230	nan	0.940	0.103	0.237	0.216	0.203	0.347	0.445	0.377	0.437	0.024	0.058	0.041	0.060	0.042	0.065	0.041	0.022	0.032	0.093
3916	chr18	76945266	76971429	+	0	NA	intron (NM_198531, intron 9 of 29)	L1MEf|LINE|L1	129072	NM_198531	374868	Hs.465475	NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding	nan	nan	0.724	1.040	0.812	0.410	0.546	0.118	0.088	0.443	0.294	1.692	0.380	0.074	0.095	0.576	0.511	0.262	0.349	1.274	nan	5.507	2.580	0.522	0.495	0.231	0.302	1.828	nan	0.299	0.129	0.299	0.397	0.698	0.774	0.181	0.294	1.763	0.902	0.069	0.300	0.146	0.152	0.546	1.692	0.033	0.093	0.159	0.071
276	chr1	44397906	44422114	+	0	NA	Intergenic	L1MEd|LINE|L1	-2468	NM_014652	9670	Hs.158497	NM_014652	ENSG00000117408	IPO13	IMP13|KAP13|LGL2|RANBP13	importin 13	protein-coding	nan	2.211	nan	0.796	2.494	1.624	1.999	1.031	0.153	0.564	0.367	2.327	1.965	0.654	0.095	1.545	2.162	1.316	2.055	3.608	3.443	1.617	0.890	1.686	1.826	1.464	nan	nan	10.018	3.078	3.136	2.330	nan	0.846	1.034	1.860	3.350	1.549	0.865	2.805	2.587	0.207	0.639	1.999	2.327	0.974	0.821	1.619	1.016
6514	chr5	151933405	151947889	+	0	NA	Intergenic	Intergenic	-155807	NM_020167	56923	Hs.731911	NM_020167	ENSG00000132911	NMUR2	FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1	neuromedin U receptor 2	protein-coding	0.593	nan	0.716	0.078	0.353	0.143	0.212	0.078	0.121	0.120	0.078	0.745	0.776	0.052	0.107	0.191	0.078	0.195	0.237	0.399	0.609	0.634	0.245	0.051	0.076	4.253	3.744	0.544	0.298	0.470	0.247	0.137	0.133	0.165	0.216	0.357	0.420	0.938	0.604	0.030	0.357	0.013	0.160	0.212	0.745	0.088	0.035	0.037	0.059
6006	chr4	117530358	117562887	+	0	NA	Intergenic	Intergenic	325741	NR_031737	100302290		NR_031737	ENSG00000270394	MIR1973	hsa-mir-1973|mir-1973	microRNA 1973	ncRNA	0.485	0.716	0.437	0.097	0.172	0.079	0.071	0.092	0.044	0.041	0.064	0.033	0.169	0.023	0.084	0.225	0.163	0.147	0.166	0.126	0.168	0.085	0.065	0.136	0.112	5.766	5.959	0.225	0.196	0.325	0.142	0.167	0.208	0.045	0.055	0.240	0.494	0.135	0.182	0.010	0.016	0.015	0.031	0.071	0.033	0.003	0.062	0.082	0.061
6376	chr5	94182542	94229794	+	0	NA	exon (NM_001002796, exon 16 of 23)	exon (NM_001002796, exon 16 of 23)	211402	NM_001297777	79772	Hs.591248	NM_024717	ENSG00000175471	MCTP1	-	multiple C2 and transmembrane domain containing 1	protein-coding	nan	2.801	0.649	0.094	0.268	0.122	0.356	0.129	0.079	0.050	0.052		0.235	1.264	0.119	0.225	0.112	0.264	0.312	0.265	0.294	1.203	0.472	0.109	0.099	0.406	0.573	0.360	0.279	0.410	0.160	0.071	0.137	9.089	10.570	0.223	nan	0.411	0.375	0.400	0.099	2.516	0.101	0.356		0.023	0.122	0.050	0.086
2465	chr13	113730991	113742135	+	0	NA	intron (NM_024979, intron 16 of 29)	intron (NM_024979, intron 16 of 29)	-23539	NR_051961	2155	Hs.36989	NM_000131	ENSG00000057593	F7	SPCA	coagulation factor VII	protein-coding	0.672	nan	1.127	0.348	2.386	1.425	1.068	0.020	0.029	0.128	0.067	4.490	1.458	0.020	0.037	0.637	0.601	0.219	0.382	2.491	1.700	1.108	0.375	0.176	0.148	0.035	0.044	0.700	1.422	1.124	1.457	0.261	0.324	0.239	0.330	0.173	0.160	0.156	0.122	9.255	2.913	0.061	0.222	1.068	4.490	0.061	0.155	0.053	0.033
3523	chr17	70767985	70787236	+	0	NA	intron (NM_001159770, intron 6 of 9)	AluY|SINE|Alu	-140999	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	LCAL5|onco-lncRNA-12	long intergenic non-protein coding RNA 511	ncRNA	1.225	0.919	1.171	0.352	0.477	0.257	0.571	0.109	0.092	0.216	0.147	0.192	0.552	0.056	0.148	0.498	0.507	0.259	0.379	0.499	0.530	1.285	0.315	0.275	0.277	nan	1.331	0.658	1.126	2.989	2.782	0.149	0.269	3.110	4.032	0.668	1.467	nan	0.538	0.081	0.149	1.389	1.002	0.571	0.192	0.649	0.099	0.041	0.743
3868	chr18	60980993	60991008	+	0	NA	5' UTR (NM_000633, exon 2 of 3)	5' UTR (NM_000633, exon 2 of 3)	613	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding	1.719	1.789	5.385	5.576	3.510	1.618	2.756	0.437	0.032	1.211	0.609	4.103	13.329	0.498	0.088	2.747	3.351	6.746	5.834	8.712	7.065	7.579	2.888	16.553	16.359	0.606	nan	8.176	8.734	1.782	1.824	2.593	5.538	4.449	4.564	0.499	0.386	6.217	3.237	3.926	2.787	0.872	1.160	2.756	4.103	0.427	2.288	2.387	0.126
4124	chr19	48861213	48883167	+	0	NA	intron (NM_012451, intron 2 of 4)	MIRb|SINE|MIR	4539	NM_012451	23546	Hs.408333	NM_012451	ENSG00000105467	SYNGR4	-	synaptogyrin 4	protein-coding	2.060	1.277	2.294	0.685	2.273	1.146	1.221	0.386	0.228	0.463	0.218	1.094	1.622	0.736	0.128	0.972	1.026	1.027	1.466	2.285	2.062	4.342	1.286	2.173	2.408	3.244	3.823	1.818	2.738	4.120	3.465	0.757	0.843	2.532	2.952	1.641	4.444	2.118	0.908	1.543	3.104	0.689	0.661	1.221	1.094	1.819	0.897	0.454	1.163
4936	chr20	35088156	35116429	+	0	NA	intron (NM_183006, intron 1 of 6)	intron (NM_183006, intron 1 of 6)	12106	NM_183006	22839	Hs.249600	NM_014902	ENSG00000080845	DLGAP4	DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4	DLG associated protein 4	protein-coding	2.033	4.360	2.665	3.292	2.259	1.244	1.530	1.475	0.274	3.150	1.350	4.545	5.572	0.476	0.108	3.114	4.635	1.123	2.021	2.340	nan	5.834	2.702	1.596	1.611	1.415	1.987	5.794	6.955	1.630	1.525	1.399	2.077	1.488	1.523	1.097	nan	1.958	1.030	3.181	5.176	0.374	0.822	1.530	4.545	0.575	1.592	0.971	0.528
4985	chr20	47431159	47449608	+	0	NA	intron (NM_020820, intron 1 of 39)	MIR|SINE|MIR	4037	NM_020820	57580	Hs.153310	NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding	nan	nan	0.720	0.096	0.224	0.130	0.924	0.757	0.096	0.147	0.172	0.052	0.985	0.311	0.087	2.817	4.589	0.585	0.713	0.495	0.492	nan	0.614	0.675	0.686	0.690	1.118	0.274	0.478	nan	3.990	1.464	2.051	0.315	0.272	1.236	2.306	0.728	0.698	0.117	0.421	0.057	0.431	0.924	0.052	0.674	0.033	1.036	0.836
2986	chr15	90691882	90745745	+	0	NA	Intergenic	L2a|LINE|L2	-9339	NM_001324030	10509	Hs.474935	NM_020210	ENSG00000185033	SEMA4B	SEMAC|SemC	semaphorin 4B	protein-coding	nan	nan	nan	0.680	1.433	0.709	0.545	0.349	0.290	0.470	0.323	1.387	2.881	0.342	0.093	1.030	1.460	0.420	0.886	1.292	1.189	nan	0.327	1.060	1.092	0.623	0.964	3.043	3.985	nan	0.916	0.795	1.254	0.649	0.615	0.870	nan	0.972	0.549	1.024	1.639	0.173	0.261	0.545	1.387	0.299	2.293	1.250	0.370
4865	chr20	17548583	17551837	+	0	NA	promoter-TSS (NM_006870)	promoter-TSS (NM_006870)	-345	NM_001278608	631	Hs.129702	NM_001195	ENSG00000125864	BFSP1	CP115|CP94|CTRCT33|LIFL-H	beaded filament structural protein 1	protein-coding	6.030	nan	8.485	7.608	3.681	2.591	5.161	10.175	0.546	2.622	1.240	6.685	13.275	2.997	0.073	9.091	12.239	8.911	13.193	8.921	6.424	10.452	3.603	8.390	8.268	2.811	4.183	10.541	13.234	4.164	5.251	2.406	8.022	7.539	5.377	2.912	3.818	2.242	1.554	4.642	3.724	2.029	1.625	5.161	6.685	5.003	6.335	3.252	0.634
3558	chr17	73891543	73914301	+	0	NA	Intergenic	AluSx|SINE|Alu	-1741	NM_032478	64978	Hs.442609	NM_032478	ENSG00000204316	MRPL38	HSPC262|L38MT|MRP-L3|MRP-L38|RPML3	mitochondrial ribosomal protein L38	protein-coding	2.074	1.613	1.713	1.429	1.984	1.077	1.104	0.582	0.368	1.801	1.256	2.122	3.992	1.164	0.147	2.013	2.869	1.173	1.932	3.407	2.796	3.243	1.147	2.258	2.253	nan	1.975	4.143	4.892	2.518	2.515	0.917	1.525	2.641	2.018	2.040	2.579	nan	0.900	0.769	2.640	0.569	0.451	1.104	2.122	0.341	2.172	0.430	0.753
3294	chr17	16341089	16346154	+	0	NA	promoter-TSS (NR_003054)	promoter-TSS (NR_003054)	271	NR_002744	26800		NR_002744	ENSG00000277370	SNORD49A	RNU49|U49|U49A	small nucleolar RNA, C/D box 49A	snoRNA	3.605	1.825	3.535	2.451	4.060	2.215	3.904	1.453	0.255	1.617	0.838	4.972	5.302	1.649	0.088	7.754	8.695	4.216	nan	6.235	6.183	8.089	3.895	4.589	5.114	2.381	3.465	9.309	8.742	11.946	11.847	3.022	5.337	2.412	2.797	12.904	12.675	2.601	1.334	1.303	2.192	0.339	0.936	3.904	4.972	1.485	7.987	1.007	5.246
8020	chr9	3464182	3482210	+	0	NA	intron (NM_001282116, intron 1 of 16)	intron (NM_001282116, intron 1 of 16)	16291	NM_001282117	5991	Hs.136829	NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding	0.942	1.806	1.520	0.165	0.808	0.291	0.405	0.348	0.125	0.733	0.661	0.222	0.434	0.216	0.082	0.393	0.340	1.325	2.163	0.475	0.566	1.722	0.531	0.331	0.298	3.462	4.240	0.389	0.386	0.466	0.198	0.225	0.451	2.422	3.627	0.382	nan	1.380	0.856	0.064	0.140	0.628	0.086	0.405	0.222	0.048	0.191	0.155	0.062
4307	chr2	43130039	43160306	+	0	NA	Intergenic	Intergenic	121510	NR_110585	102723854	Hs.570165	NR_110585	ENSG00000231826	LINC01819	-	long intergenic non-protein coding RNA 1819	ncRNA	3.566	nan	4.104	1.349	2.806	1.388	1.258	0.785	0.151	0.878	0.447	1.700	0.935	0.089	0.095	0.357	0.287	0.290	0.684	nan	4.190	1.031	0.424	0.516	0.597	0.662	1.097	1.269	2.175	1.189	1.092	0.450	0.700	1.799	1.467	1.595	nan	nan	0.815	0.300	0.694	0.735	0.251	1.258	1.700	0.483	1.262	0.425	1.337
2586	chr14	50525533	50534862	+	0	NA	intron (NR_131171, intron 2 of 8)	L1M5|LINE|L1	41564	NR_131171	196913	Hs.406934	NM_001014830		LINC01599	C14orf183	long intergenic non-protein coding RNA 1599	ncRNA	nan	nan	0.947	0.273	0.522	0.120	1.804	1.512	0.259	0.434	0.195	0.410	0.993	0.062	0.116	0.451	0.247	0.476	1.263	0.439	0.517	2.462	0.868	0.344	0.318	0.323	0.641	0.827	0.959	0.823	0.716	0.268	0.361	2.245	3.182	0.504	1.374	nan	1.195	0.082	0.248	0.541	0.092	1.804	0.410	0.072	3.332	0.053	0.348
1184	chr10	99077877	99097824	+	0	NA	Intergenic	Intergenic	6608	NM_012083	23401	Hs.140720	NM_012083	ENSG00000181274	FRAT2	-	FRAT2, WNT signaling pathway regulator	protein-coding	2.014	2.208	2.536	1.494	1.717	0.755	0.879	0.574	0.128	0.558	0.243	3.279	4.101	0.990	0.086	1.462	2.056	2.864	3.314	2.502	2.650	3.205	2.089	2.058	2.180	0.670	0.948	nan	5.136	1.527	1.875	1.176	1.598	1.494	1.645	1.094	1.351	1.393	0.812	0.942	1.805	0.291	0.780	0.879	3.279	0.182	1.556	0.258	0.306
8295	chr9	132037202	132053202	+	0	NA	intron (NR_121587, intron 1 of 2)	intron (NR_121587, intron 1 of 2)	507	NR_121587	101929331	Hs.522428	NR_121587	ENSG00000224307	LOC101929331	-	uncharacterized LOC101929331	ncRNA	nan	0.748	0.846	0.852	0.641	0.300	0.276	0.093	0.086	0.420	0.193	1.455	1.142	0.068	0.061	0.757	1.306	0.353	0.645	2.584	2.778	nan	0.080	0.152	0.277	0.173	0.395	6.924	6.310	0.631	0.458	0.752	1.195	0.528	0.491	0.314	0.572	0.937	0.619	6.268	1.615	0.095	0.055	0.276	1.455	0.629	0.278	1.071	0.070
7796	chr8	94923589	94949894	+	0	NA	3' UTR (NM_018444, exon 2 of 2)	3' UTR (NM_018444, exon 2 of 2)	7462	NM_001161781	54704	Hs.22265	NM_018444	ENSG00000164951	PDP1	PDH|PDP|PDPC|PPM2A|PPM2C	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	nan	1.391	1.473	1.103	0.743	0.336	1.812	0.875	0.232	0.250	0.143	1.038	3.861	3.738	0.140	0.492	0.558	0.948	nan	2.992	2.230	2.416	0.705	0.687	0.625	0.823	1.169	3.630	4.149	0.807	0.836	0.290	0.562	1.215	1.194	0.745	1.135	1.281	0.816	0.774	0.659	0.239	0.330	1.812	1.038	0.077	0.564	0.099	0.159
6046	chr4	153268408	153304334	+	0	NA	intron (NM_033632, intron 2 of 11)	L2c|LINE|L2	-12261	NM_018315	55294	Hs.561245	NM_018315	ENSG00000109670	FBXW7	AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4	F-box and WD repeat domain containing 7	protein-coding	nan	1.108	0.791	0.754	5.732	3.086	0.281	0.230	0.049	0.456	0.353	0.737	0.547	0.112	0.107	0.452	0.590	0.706	1.185	0.763	1.036	1.558	0.610	2.748	2.695	0.421	0.618	2.351	2.513	0.644	0.441	0.450	0.818	0.385	0.366	0.251	0.568	0.960	0.542	0.098	0.174	0.064	0.223	0.281	0.737	0.014	0.355	0.489	0.063
7944	chr8	135557083	135614752	+	0	NA	intron (NM_001029939, intron 11 of 16)	intron (NM_001029939, intron 11 of 16)	-24397	NR_002438	594840	Hs.626298	NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA	nan	1.003	1.380	0.206	0.478	0.206	0.366	0.172	0.083	0.074	0.061	0.183	2.119	0.038	0.074	0.316	0.226	0.279	0.352	1.199	1.138	0.926	0.309	nan	0.844	0.404	0.671	0.381	0.377	0.462	0.365	0.211	0.342	0.177	0.226	0.381	0.775	0.637	0.563	3.451	2.174	0.040	0.109	0.366	0.183	0.068	0.093	0.084	0.236
7590	chr8	10255222	10269645	+	0	NA	intron (NM_001199729, intron 6 of 6)	intron (NM_001199729, intron 6 of 6)	-69642	NR_120604	101929191	Hs.595262	NR_120604	ENSG00000253641	LINCR-0001	-	uncharacterized LINCR-0001	ncRNA	1.076	0.775	5.160	0.243	0.650	0.242	0.312	0.156	0.113	0.435	0.217	3.790	0.084	0.091	0.066	0.896	1.518	0.696	0.584	3.826	nan	0.185	0.063	1.602	1.502	0.333	0.600	1.715	1.719	2.888	4.113	0.521	0.788	0.809	0.865	1.432	3.326	2.944	1.514	0.055	0.745	0.184	0.617	0.312	3.790	0.360	0.324	1.261	1.653
5603	chr3	149914165	149961210	+	0	NA	Intergenic	Intergenic	-18619	NR_110168	101927992	Hs.534682	NR_110167	ENSG00000244541	LINC01213	-	long intergenic non-protein coding RNA 1213	ncRNA	1.356	nan	nan	0.307	0.438	0.286	0.890	0.734	0.247	0.468	0.307	0.155	3.287	0.069	0.077	0.434	0.395	0.637	1.737	0.610	0.684	nan	0.942	0.306	0.326	1.319	nan	0.989	nan	nan	0.683	0.508	0.657	0.575	0.642	0.425	0.802	1.823	1.022	0.543	0.429	0.129	0.173	0.890	0.155	0.215	0.248	0.225	0.134
7977	chr8	142970231	142990318	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	99383	NR_130468	100616374		NR_130468	ENSG00000265612	MIR4539	-	microRNA 4539	ncRNA	2.117	1.013	nan	0.061	0.718	0.388	0.337	0.074	0.088	0.102	0.095	1.323	2.965	0.038	0.079	0.241	0.158	0.085	0.121	nan	4.204	nan	0.074	0.116	0.162	0.811	0.862	0.651	0.771	1.894	1.785	0.504	0.755	0.486	0.655	0.507	1.035	0.351	0.306	6.387	3.467	0.132	0.276	0.337	1.323	0.846	0.178	0.454	0.282
5047	chr20	62127520	62141123	+	0	NA	Intergenic	Intergenic	-3653	NM_001958	1917	Hs.433839	NM_001958	ENSG00000101210	EEF1A2	EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL	eukaryotic translation elongation factor 1 alpha 2	protein-coding	2.622	2.982	1.344	0.486	1.924	1.009	2.026	0.073	0.083	0.832	0.278	2.487	2.762	1.257	0.098	4.398	nan	0.264	0.337	3.963	3.770	4.603	2.501	0.555	0.509	1.296	1.892	0.198	0.221	4.939	4.706	0.693	1.111	1.284	1.056	0.402	0.608	2.287	1.344	3.765	2.798	0.411	4.229	2.026	2.487	2.284	0.547	0.673	0.055
2869	chr15	47475531	47479188	+	0	NA	intron (NM_001198999, intron 1 of 19)	CpG	956	NM_001198999	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding	5.325	3.598	nan	2.575	5.456	2.851	4.003	0.193	0.087	4.286	3.063	6.639	12.946		0.077	0.351	0.337	0.089	0.190	11.649	8.509	9.602	3.199	5.746	6.250	4.016	nan	2.277	4.878	16.154	19.910	0.111	0.202	13.590	8.847	10.969	11.059	5.177	3.520	4.332	4.024	2.032	1.175	4.003	6.639	3.006	0.063	0.027	2.225
7555	chr7	155086631	155093093	+	0	NA	intron (NM_001346593, intron 1 of 3)	CpG	380	NM_001346594	3638	Hs.520819	NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding	3.048	2.459	nan	3.299	6.164	3.415	5.518	4.533	0.275	3.640	1.567	10.833	4.690	2.438	0.164	2.782	3.491	2.118	3.640	7.673	4.642	3.768	4.872	4.446	3.743	2.389	2.787	2.024	4.034	2.553	2.349	3.762	9.400	4.605	3.237	2.180	3.927	2.701	1.312	5.255	10.685	1.685	2.070	5.518	10.833	0.782	2.228	4.072	1.890
4220	chr2	12855806	12862344	+	0	NA	intron (NM_021643, intron 1 of 2)	intron (NM_021643, intron 1 of 2)	2077	NM_021643	28951	Hs.467751	NM_021643	ENSG00000071575	TRIB2	C5FW|GS3955|TRB2	tribbles pseudokinase 2	protein-coding	2.233	2.792	2.323	2.716	1.183	0.639	1.540	2.364	0.172	2.662	1.435	4.300	18.907	0.128	0.050	4.962	7.140	1.654	2.833	6.884	5.051	0.379	0.130	4.093	3.858	1.750	3.055	10.118	10.428	3.188	4.446	0.207	0.253	0.449	0.265	1.799	nan	3.204	1.662	1.343	7.513	0.044	1.696	1.540	4.300	2.071	8.050	0.147	1.627
6511	chr5	150283399	150285608	+	0	NA	promoter-TSS (NM_001172831)	promoter-TSS (NM_001172831)	42	NM_001172832	91975	Hs.134885	NM_052860	ENSG00000145908	ZNF300	-	zinc finger protein 300	protein-coding	1.157	nan	1.037	3.743	3.549	1.888		2.069	0.144	0.846	0.190	3.520	0.555	5.353	0.104	1.158	1.142	0.141	0.115	5.765	6.520	12.280	8.083	12.612	13.588	4.833	6.234	15.607	24.283	12.051	11.884	3.232	4.409	5.361	5.951	6.267	4.574	5.152	3.353	2.913	1.720	0.254	0.473		3.520	1.928		0.448	1.728
939	chr1	235803667	235821542	+	0	NA	intron (NM_001098721, intron 1 of 3)	CpG	689	NM_001098722	2786	Hs.159711	NM_004485	ENSG00000168243	GNG4	-	G protein subunit gamma 4	protein-coding	3.484	5.201	1.258	5.099	2.674	1.440	2.229	0.168	0.072	3.736	1.527	3.147	2.731	0.359	0.113	3.030	3.777	1.624	2.507	3.604	2.701	nan	1.915	0.317	0.397	1.564	2.139	nan	6.682	1.440	1.469	0.730	1.188	3.804	4.502	2.334	2.254	nan	1.633	1.357	0.685	0.739	0.995	2.229	3.147	0.571	2.153	0.311	0.435
5222	chr22	26873597	26881128	+	0	NA	intron (NM_022081, intron 2 of 13)	intron (NM_022081, intron 2 of 13)	-1715	NM_152841	89781	Hs.474436	NM_022081	ENSG00000100099	HPS4	BLOC3S2|LE	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	nan	1.398	2.674	1.745	2.145	0.948	1.932	1.116	0.126	1.821	0.729	2.616	2.386	1.504	0.077	3.381	3.056	2.201	nan	3.771	3.603	7.081	2.526	5.920	5.772	3.565	nan	3.393	4.904	5.374	5.221	2.334	3.346	7.136	10.572	2.674	nan	5.995	3.741	0.512	0.741	1.567	2.168	1.932	2.616	1.030	1.657	0.984	1.145
4095	chr19	45191743	45205410	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3845	NM_001039213	388551	Hs.456381	NM_001039213	ENSG00000213892	CEACAM16	CEAL2|DFNA4B	carcinoembryonic antigen related cell adhesion molecule 16	protein-coding	0.580	0.606	0.737	1.133	0.443	0.269	0.179	0.333	0.108	0.160	0.101	0.830	0.565	0.510	0.148	0.316	0.412	0.351	0.445	0.612	0.634	7.892	3.357	0.698	0.836	0.174	0.393	1.797	2.149	0.284	0.087	0.407	0.388	0.835	0.668	0.178	0.281	1.591	0.881	0.040	0.095	0.126	0.006	0.179	0.830	0.042	1.072	0.029	0.025
1670	chr11	116267197	116303693	+	0	NA	Intergenic	Intergenic	-224694	NR_135069	101929011	Hs.733911	NR_135069	ENSG00000237937	LOC101929011	-	uncharacterized LOC101929011	ncRNA	0.877	1.088	0.675	0.315	0.892	0.456	1.915	0.029	0.044	1.000	0.562	1.588	2.547	0.045	0.099	0.321	nan	0.211	0.487	0.779	0.820	4.722	2.092	0.120	0.125	1.218	nan	0.845	1.100	0.866	0.587	0.609	1.060	0.946	0.930	1.022	3.543	1.874	1.098	0.428	0.154	0.227	0.892	1.915	1.588	0.104	0.083	0.788	1.716
2010	chr12	68471716	68478020	+	0	NA	Intergenic	Intergenic	78653	NM_000619	3458	Hs.856	NM_000619	ENSG00000111537	IFNG	IFG|IFI	interferon gamma	protein-coding	0.732	0.565	0.471	0.068	0.224	0.152	0.237	0.119	0.181	0.088	0.142	0.095	0.273	0.052	0.046	5.277	4.339	9.021	4.436	0.457	nan	0.113	0.062	3.567	3.224	0.298	0.504	0.410	0.361	0.408	0.115	0.975	2.400	0.081	0.152	0.127	0.231	0.657	0.804	0.018	0.191		0.039	0.237	0.095	0.030	0.032	0.704	0.039
6170	chr5	10583238	10608458	+	0	NA	intron (NM_001164440, intron 1 of 3)	intron (NM_001164440, intron 1 of 3)	31413	NM_001164440	651746	Hs.26039	NM_001164440	ENSG00000164236	ANKRD33B	-	ankyrin repeat domain 33B	protein-coding	nan	nan	nan	0.595	0.826	0.334	0.472	1.319	0.312	0.351	0.319	0.697	nan	0.116	0.085	1.002	1.190	1.017	1.907	1.304	1.399	0.243	0.097	0.421	0.453	nan	3.255	0.858	0.967	2.758	2.467	0.725	1.026	1.297	1.278	0.609	nan	0.978	0.799	0.082	1.948	0.155	0.124	0.472	0.697	0.479	0.512	0.636	0.393
3342	chr17	27438265	27458931	+	0	NA	exon (NM_078471, exon 5 of 42)	exon (NM_078471, exon 5 of 42)	18799	NM_001346768	399687	Hs.462590	NM_078471	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210	myosin XVIIIA	protein-coding	nan	nan	nan	0.080	0.496	0.326	0.287	0.204	0.078	0.087	0.070	0.139	0.414	0.126	0.140	0.690	0.848	0.365	0.551	0.688	0.656	0.947	0.332	0.435	0.471	0.385	0.756	0.508	0.714	5.622	5.190	0.806	0.891	0.258	0.344	0.532	nan	0.718	0.333	0.513	0.181	0.072	0.170	0.287	0.139	0.551	0.069	0.287	0.655
1537	chr11	77807337	77822888	+	0	NA	intron (NM_024079, intron 11 of 12)	intron (NM_024079, intron 11 of 12)	-23847	NM_004549	4718	Hs.407860	NM_004549	ENSG00000151366	NDUFC2	B14.5b|CI-B14.5b|HLC-1|NADHDH2	NADH:ubiquinone oxidoreductase subunit C2	protein-coding	nan	1.849	2.383	0.453	0.403	0.288	0.584	0.331	0.186	0.760	0.562	0.600	4.278	0.184	0.110	0.462	0.494	0.321	0.493	2.969	3.286	0.925	0.331	0.749	0.818	4.007	4.675	0.614	0.582	1.027	0.883	0.208	0.432	0.943	1.776	0.943	2.195	1.759	1.001	4.160	2.840	0.250	0.666	0.584	0.600	0.967	0.156	0.070	0.762
894	chr1	226055897	226087164	+	0	NA	Intergenic	Intergenic	-1110	NM_014698	9725	Hs.119387	NM_014698	ENSG00000196187	TMEM63A	KIAA0792	transmembrane protein 63A	protein-coding	1.533	nan	1.758	1.720	1.707	0.810	0.417	0.534	0.226	0.447	0.286	2.257	0.874	0.562	0.088	1.432	2.453	2.227	6.225	1.215	nan	2.294	0.667	1.536	1.567	0.298	0.545	3.734	2.982	0.708	0.573	0.627	1.008	0.454	0.672	0.628	1.632	1.351	0.834	0.342	0.110	0.100	0.312	0.417	2.257	0.100	0.230	0.560	0.289
1298	chr11	10471595	10481422	+	0	NA	promoter-TSS (NM_001025390)	promoter-TSS (NM_001025390)	-158	NM_001025389	272	Hs.501890	NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding	1.784	nan	1.737	2.462	0.940	0.278	1.190	0.126	0.099	1.613	0.707	5.426	3.343	0.099	0.067	nan	6.324	0.665	0.614	10.930	9.410	7.080	3.061	3.814	3.932	0.541	nan	4.079	5.473	1.884	2.775	2.602	4.279	2.378	2.196	1.277	4.480	3.716	nan	3.322	5.606	0.570	0.413	1.190	5.426	0.406	0.883	2.431	1.329
3425	chr17	43406888	43423745	+	0	NA	Intergenic	Intergenic	-20886	NM_003954	9020	Hs.404183	NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.944	1.417	nan	2.899	3.110	1.332	0.248	0.607	0.210	0.990	0.433	1.017	0.800	0.376	0.099	0.453	0.468	0.319	0.793	1.707	nan	4.971	1.685	0.539	0.586	0.234	0.438	6.236	nan	0.707	0.322	0.342	0.335	0.863	0.704	0.341	0.558	2.005	1.086	0.133	0.212	0.181	0.029	0.248	1.017	0.047	0.091	0.047	0.087
140	chr1	23865641	23904910	+	0	NA	intron (NM_002167, intron 2 of 2)	MIRc|SINE|MIR	1010	NM_002167	3399	Hs.76884	NM_002167	ENSG00000117318	ID3	HEIR-1|bHLHb25	inhibitor of DNA binding 3, HLH protein	protein-coding	2.638	2.557	nan	2.635	1.752	0.980	1.930	2.107	0.311	1.507	0.666	2.107	8.220	3.760	0.179	1.586	1.398	6.445	10.902	4.596	3.710	3.565	1.063	3.940	3.838	3.688	4.816	1.160	1.687	2.804	2.533	1.348	2.126	2.361	2.720	2.583	3.233	2.601	1.582	5.280	1.974	0.609	2.128	1.930	2.107	1.063	1.520	1.024	0.934
4950	chr20	37509319	37523128	+	0	NA	intron (NM_001172735, intron 2 of 9)	MER3|DNA|hAT-Charlie	-38732	NM_030919	81610	Hs.726442	NM_030919	ENSG00000101447	FAM83D	C20orf129|CHICA|dJ616B8.3	family with sequence similarity 83 member D	protein-coding	1.094	1.097	1.962	0.266	0.319	0.161	0.250	0.070	0.118	0.194	0.108	0.078	0.757	0.079	0.103	4.409	5.045	0.512	0.214	0.654	nan	1.525	0.480	0.209	0.221	1.212	1.667	0.479	0.660	3.052	3.689	1.092	1.141	0.401	0.396	0.489	nan	0.627	0.455	0.144	0.197	0.116	0.496	0.250	0.078	0.754	0.242	0.340	0.142
7468	chr7	126884104	126895063	+	0	NA	intron (NM_001127323, intron 1 of 10)	intron (NM_001127323, intron 1 of 10)	2845	NM_001127323	2918	Hs.449625	NM_000845	ENSG00000179603	GRM8	GLUR8|GPRC1H|MGLUR8|mGlu8	glutamate metabotropic receptor 8	protein-coding	1.162	1.343	1.251	0.625	1.321	1.080	0.573	0.122	0.133	0.280	0.301	0.619	3.339	0.079	0.152	0.322	0.228	2.008	2.712	2.674	1.637	0.574	0.210	0.690	0.703	0.393	0.766	1.641	2.880	3.035	3.270	0.180	0.236	0.625	0.473	0.411	0.720	1.151	0.869	5.109	2.734	0.435	0.881	0.573	0.619	0.673	0.921	0.036	0.068
5393	chr3	66446803	66453179	+	0	NA	intron (NM_015541, intron 9 of 18)	AluJb|SINE|Alu	100854	NM_015541	26018	Hs.518055	NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding	2.161	nan	4.065	0.706	0.440	0.277	0.597	0.165	0.025	0.870	0.217	1.679	0.326		0.068	0.280	0.564	0.440	0.645	2.797	2.611	2.035	0.358	0.236	0.226	0.580	0.821	0.448	0.451	2.768	3.065	0.223	0.399	0.944	1.201	0.820	nan	1.501	0.604	0.071	0.259	0.356	5.767	0.597	1.679	0.927	0.064	0.047	1.206
985	chr10	547036	566795	+	0	NA	intron (NM_014974, intron 1 of 36)	intron (NM_014974, intron 1 of 36)	130803	NR_049884	100847086		NR_049884	ENSG00000263511	MIR5699	mir-5699	microRNA 5699	ncRNA	0.563	0.854	1.117	0.464	1.354	0.727	0.323	0.173	0.187	0.191	0.109	1.483	3.979	0.105	0.058	0.421	0.638	0.259	0.522	1.060	0.985	2.360	0.825	0.207	0.234	0.520	0.787	2.261	3.171	0.347	0.187	0.304	0.637	0.381	0.346	0.237	0.195	0.293	0.198	1.284	2.886	0.048	0.137	0.323	1.483	0.158	0.775	0.318	0.094
754	chr1	193276057	193283771	+	0	NA	intron (NR_125789, intron 1 of 3)	intron (NR_125789, intron 1 of 3)	6039	NR_125789	101929184	Hs.146728	NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA	0.950	nan	3.352	3.141	1.394	0.505	0.131	0.193	0.041	2.011	0.763	2.420	1.176	0.071	0.112	0.780	0.575	0.663	0.740	2.611	2.606	11.424	4.894	0.695	0.696	0.674	nan	5.756	3.938	0.348	0.202	0.254	0.554	1.930	1.828	0.424	0.886	5.153	2.203	0.044	0.139	0.221	0.207	0.131	2.420		1.842	0.051	0.175
8248	chr9	116224642	116246233	+	0	NA	intron (NM_001282923, intron 1 of 22)	MLT1F1|LTR|ERVL-MaLR	9457	NM_001282923	5998	Hs.494875	NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding	1.164	1.807	nan	3.508	1.163	0.617	0.808	0.387	0.083	1.024	0.423	1.519	2.883	0.163	0.087	0.818	1.178	1.780	2.263	2.844	2.776	2.516	0.646	1.372	1.528	0.112	0.227	1.474	nan	1.632	1.626	0.590	1.171	1.540	1.228	0.387	0.752	nan	1.976	2.450	1.483	0.300	0.617	0.808	1.519	0.234	1.446	0.545	0.189
4147	chr19	55758528	55775478	+	0	NA	intron (NM_014931, intron 1 of 23)	intron (NM_014931, intron 1 of 23)	3035	NM_014931	22870	Hs.515610	NM_014931	ENSG00000105063	PPP6R1	KIAA1115|PP6R1|SAP190|SAPS1	protein phosphatase 6 regulatory subunit 1	protein-coding	1.953	1.944	3.247	3.201	2.688	1.561	1.367	0.732	0.237	1.366	0.675	1.982	1.789	1.267	0.144	2.956	3.902	1.562	2.495	2.954	2.932	5.147	1.852	1.611	1.778	1.633	2.183	5.361	6.824	2.540	2.060	1.800	3.028	1.637	1.855	1.490	2.428	3.398	1.655	2.012	1.812	0.348	0.941	1.367	1.982	0.569	0.869	1.079	0.861
6223	chr5	32488814	32509294	+	0	NA	Intergenic	HAL1b|LINE|L1	-54187	NR_144318	51663	Hs.435231	NM_016107	ENSG00000056097	ZFR	SPG71|ZFR1	zinc finger RNA binding protein	protein-coding	1.289	1.607	nan	0.746	0.549	0.305	0.926	3.331	0.683	1.333	0.878	5.642	1.012	0.032	0.121	0.476	0.543	0.343	0.608	4.121	3.617	3.359	1.025	0.284	0.337	1.755	2.838	0.242	0.249	2.295	2.146	0.338	0.492	1.157	0.993	0.160	0.210	2.726	1.604	0.079	0.206	0.338	0.101	0.926	5.642	0.478	0.546	0.114	0.036
4355	chr2	53760566	53780565	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	-224355	NM_001346127	494143	Hs.585944	NM_001008708	ENSG00000143942	CHAC2	-	ChaC cation transport regulator homolog 2	protein-coding	6.995	nan	6.846	0.194	0.214	0.152	0.159	0.131	0.024	0.165	0.153	0.138	0.729	0.032	0.152	0.353	0.257	0.166	0.198	0.438	0.474	0.334	0.138	0.341	0.321	1.324	1.857	0.395	0.345	0.488	0.208	0.147	0.262	14.077	9.710	0.420	0.909	0.817	0.422	0.190	0.071	2.372	0.155	0.159	0.138	0.039	0.250	0.044	0.223
6713	chr6	32929757	32951537	+	0	NA	promoter-TSS (NM_001199456).4	promoter-TSS (NM_001199456).4	-214	NM_001199456	6046	Hs.75243	NM_005104	ENSG00000204256	BRD2	D6S113E|FSH|FSRG1|NAT|O27.1.1|RING3|RNF3	bromodomain containing 2	protein-coding	nan	3.121	nan	5.499	5.438	3.104	5.414	3.398	0.363	2.240	0.974	6.617	9.538	4.385	0.177	5.728	5.053	5.696	nan	nan	6.724	5.547	3.900	11.380	12.502	3.275	4.180	7.266	10.702	7.968	7.327	3.729	5.640	6.251	6.935	7.822	7.030	2.536	1.460	4.040	4.377	1.770	3.141	5.414	6.617	1.420	2.250	2.639	3.338
6365	chr5	92899710	92952426	+	0	NA	intron (NM_005654, intron 2 of 2)	intron (NM_005654, intron 2 of 2)	7025	NM_005654	7025	Hs.519445	NM_005654	ENSG00000175745	NR2F1	BBOAS|BBSOAS|COUP-TFI|EAR-3|EAR3|ERBAL3|NR2F2|SVP44|TCFCOUP1|TFCOUP1	nuclear receptor subfamily 2 group F member 1	protein-coding	nan	9.108	2.728	0.217	0.541	0.294	5.684	0.818	0.109	0.247	0.210	0.002	1.519	6.618	0.176	0.272	0.179	1.128	1.032	0.817	0.613	3.090	1.252	0.203	0.209	1.214	1.617	0.588	0.591	0.554	0.340	0.115	0.173	12.244	8.347	0.205	nan	1.908	1.117	0.414	0.752	3.379	0.509	5.684	0.002	0.099	1.268	0.016	0.199
8150	chr9	71135161	71140274	+	0	NA	intron (NM_021965, intron 10 of 10)	intron (NM_021965, intron 10 of 10)	18066	NM_153237	169693	Hs.663056	NM_153237	ENSG00000181778	TMEM252	C9orf71	transmembrane protein 252	protein-coding	nan	nan	nan	0.119	0.153	0.180	0.119	0.162	0.062	0.031	0.141	0.070	0.242		0.087	0.610	0.473	8.701	nan	0.355	nan	0.081	0.060	3.286	3.819	0.358	0.349	0.113	0.117	0.174	0.029	1.057	2.263	0.073	0.096	0.061	0.188	0.556	0.437	0.047		0.019	0.030	0.119	0.070		0.078	1.198	0.143
698	chr1	182053116	182093826	+	0	NA	Intergenic	L1MEg|LINE|L1	-42624	NM_001009992	127665	Hs.684328	NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding	nan	nan	1.021	0.126	0.233	0.122	0.292	0.140	0.198	0.134	0.177	0.030	0.481	0.053	0.117	1.464	1.298	5.785	6.550	0.522	nan	0.154	0.084	nan	0.824	0.246	0.493	0.309	0.293	0.365	0.210	1.897	1.968	0.094	0.118	0.272	nan	0.389	0.423	0.031	0.187	0.021	0.103	0.292	0.030	0.110	0.034	0.617	0.099
7122	chr7	1262580	1269371	+	0	NA	Intergenic	Intergenic	-6679	NM_001080461	340260	Hs.232272	NM_001080461	ENSG00000164853	UNCX	UNCX4.1	UNC homeobox	protein-coding	5.535	0.623	13.860	0.052	0.224	0.118	0.107	0.089	0.032	0.140	0.072	0.123	nan	0.098	0.142	0.246	0.198	0.111	nan	0.467	0.269	nan	0.097	0.246	0.310	0.126	0.226	nan	0.281	2.215	2.661	0.158	0.146	0.148	0.202	0.139	0.538	0.293	0.207	0.030	0.052	0.017	0.047	0.107	0.123	1.102	0.075	0.007	0.091
6226	chr5	33439250	33443892	+	0	NA	intron (NR_047678, intron 1 of 17)	MIR3|SINE|MIR	689	NR_047677	6897	Hs.481860	NM_152295	ENSG00000113407	TARS	ThrRS	threonyl-tRNA synthetase	protein-coding	4.206	3.509	9.056	11.903	3.323	1.764	3.289	7.581	0.450	5.172	2.243	5.631	11.641	5.290	0.204	5.542	6.441	7.747	10.123	7.335	6.366	8.197	2.984	16.311	17.511	7.397	9.780	9.241	13.051	12.203	13.390	4.735	9.620	7.885	7.431	3.938	5.772	5.058	2.750	2.610	3.955	1.249	2.558	3.289	5.631	1.566	3.715	2.991	1.890
524	chr1	150178744	150187638	+	0	NA	Intergenic	Intergenic	23835	NM_001136479	81611	Hs.656466	NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding	nan	nan	1.426	0.298	0.586	0.290	0.248	0.349	0.214	0.494	0.318	0.501	0.799	0.172	0.152	1.750	1.382	1.446	1.872	0.983	nan	1.038	0.313	0.425	0.413	6.204	6.334	0.381	0.566	2.760	2.755	1.235	1.174	0.551	0.806	0.651	1.219	1.421	0.737	0.062	0.850	0.033	0.125	0.248	0.501	0.919	0.789	0.557	0.153
2176	chr12	120661711	120676525	+	0	NA	intron (NM_001080855, intron 1 of 11)	intron (NM_001080855, intron 1 of 11)	18846	NM_025157	5829	Hs.446336	NM_002859	ENSG00000089159	PXN	-	paxillin	protein-coding	1.821	2.684	3.002	1.262	0.750	0.344	3.591	2.875	0.371	0.742	0.356	0.900	1.277	0.398	0.122	0.534	1.030	0.811	2.576	2.095	2.092	nan	1.008	0.759	0.826	1.699	2.534	2.889	3.760	1.066	1.107	0.607	0.685	3.802	4.153	0.649	1.502	3.335	1.796	0.847	1.741	1.160	0.464	3.591	0.900	1.446	0.522	0.260	0.453
7235	chr7	30026427	30030462	+	0	NA	intron (NM_001145514, intron 1 of 7)	intron (NM_001145514, intron 1 of 7)	981	NM_001145515	9805	Hs.520740	NM_014766	ENSG00000136193	SCRN1	SES1	secernin 1	protein-coding	6.919	4.090	6.499	1.557	3.761	1.846	3.106	4.865	0.338	3.761	2.291	11.529	7.217	8.627	0.277	3.575	8.513	5.540	11.759	5.644	nan	9.047	3.784	2.594	2.544	7.118	nan	nan	nan	7.079	8.807	6.048	11.434	8.166	7.133	5.376	nan	2.107	1.333	2.484	4.992	1.647	4.620	3.106	11.529	1.681	5.637	4.311	2.090
2714	chr14	81762164	81791560	+	0	NA	intron (NM_033104, intron 4 of 5)	intron (NM_033104, intron 4 of 5)	-89287	NM_201595	2957	Hs.592334	NM_015859	ENSG00000165417	GTF2A1	TF2A1|TFIIA|TFIIA-42|TFIIAL	general transcription factor IIA subunit 1	protein-coding	nan	1.959	1.290	0.740	0.542	0.288	1.936	0.667	0.202	0.284	0.159	0.425	0.722	0.032	0.123	0.274	0.290	0.450	0.939	0.871	0.906	2.611	0.894	0.393	0.361	0.951	1.320	1.285	1.742	3.922	3.341	0.214	0.315	1.926	3.203	1.203	4.058	1.588	1.390	0.611	0.411	0.499	0.226	1.936	0.425	0.675	0.092	0.111	1.458
4380	chr2	61761990	61767729	+	0	NA	5' UTR (NM_003400, exon 1 of 25)	5' UTR (NM_003400, exon 1 of 25)	559	NM_003400	7514	Hs.370770	NM_003400	ENSG00000082898	XPO1	CRM1|emb|exp1	exportin 1	protein-coding	6.677	2.915	4.470	5.376	7.723	3.635	5.020	3.303	0.361	5.438	1.699	5.992	15.600	7.094	0.165	5.076	6.797	6.871	9.038	12.592	11.430	8.355	4.999	13.392	14.157	4.358	6.045	10.988	16.019	12.329	13.753	4.740	9.690	5.743	5.021	10.684	11.087	4.840	2.701	4.574	8.455	1.085	3.843	5.020	5.992	2.161	2.985	2.966	4.337
3418	chr17	41620100	41623889	+	0	NA	3' UTR (NM_001322219, exon 24 of 24)	3' UTR (NM_001322219, exon 24 of 24)	1311	NM_001986	2118	Hs.434059	NM_001986	ENSG00000175832	ETV4	E1A-F|E1AF|PEA3|PEAS3	ETS variant 4	protein-coding	2.643	2.259	nan	0.905	1.147	0.804	1.225	1.478	0.128	0.203	0.189	0.063	3.780	3.112	0.074	6.602	7.277	11.027	7.493	0.430	nan	3.327	1.233	1.506	1.257	0.474	1.207	0.964	nan	0.747	0.281	0.876	0.656	1.389	2.083	0.213	0.249	0.377	0.495	0.059	0.164	0.126	0.042	1.225	0.063	0.155	2.176	0.026	0.034
598	chr1	157013017	157018628	+	0	NA	promoter-TSS (NM_198236)	promoter-TSS (NM_198236)	-660	NM_014784	9826	Hs.516954	NM_014784	ENSG00000132694	ARHGEF11	GTRAP48|PDZ-RHOGEF	Rho guanine nucleotide exchange factor 11	protein-coding	nan	nan	2.724	1.867	2.033	1.226	2.963	1.615	0.120	1.462	0.871	3.456	5.255	3.077	0.136	6.305	5.955	9.708	7.392	6.785	nan	4.388	2.024	2.488	2.581	2.461	3.141	5.137	7.385	2.705	2.183	7.217	10.161	2.138	1.507	3.000	3.510	2.210	0.796	1.109	3.334	0.270	0.518	2.963	3.456	0.296	2.533	3.267	0.840
780	chr1	202203694	202225172	+	0	NA	intron (NM_001017404, intron 4 of 15)	intron (NM_001017404, intron 4 of 15)	31150	NM_001017404	59352	Hs.497402	NM_021636	ENSG00000133067	LGR6	GPCR|VTS20631	leucine rich repeat containing G protein-coupled receptor 6	protein-coding	1.226	1.304	1.502	0.146	1.168	0.790	0.853	0.227	0.120	0.409	0.252	0.291	0.809	0.120	0.091	0.485	0.585	0.571	0.971	0.614	0.704	1.235	0.253	nan	nan	0.524	0.886	0.452	0.613	1.086	0.869	0.296	0.352	3.087	2.961	0.454	0.815	1.135	0.673	0.244	0.461	1.473	0.222	0.853	0.291	1.016	0.033	0.193	0.289
7470	chr7	128165342	128174129	+	0	NA	Intergenic	Intergenic	52952	NM_018396	55798	Hs.433213	NM_018396	ENSG00000165055	METTL2B	METL|METTL2|METTL2A|PSENIP1	methyltransferase like 2B	protein-coding	3.887	2.254	3.429	2.527	3.714	1.845	3.332	2.344	0.401	2.445	1.058	6.621	4.816	4.036	0.209	4.720	4.928	4.756	6.654	5.838	5.753	5.374	4.245	10.275	10.648	2.448	3.327	3.420	6.799	4.483	5.106	4.055	8.181	3.339	4.448	5.005	4.592	2.387	1.322	1.705	3.257	1.048	2.320	3.332	6.621	0.929	2.160	1.396	1.406
3547	chr17	72862933	72874112	+	0	NA	intron (NM_001258013, intron 1 of 12)	intron (NM_001258013, intron 1 of 12)	634	NM_024417	2232	Hs.69745	NM_004110	ENSG00000161513	FDXR	ADXR	ferredoxin reductase	protein-coding	2.140	1.437	2.584	1.032	1.714	0.815	0.607	0.802	0.125	0.517	0.297	0.900	3.792	1.268	0.145	1.846	2.221	1.501	2.134	2.457	2.143	2.231	1.032	1.177	1.173	nan	5.082	2.323	3.598	2.325	2.310	1.054	1.742	1.702	1.937	1.305	1.783	nan	0.780	0.339	1.058	0.272	0.365	0.607	0.900	0.453	0.919	0.478	0.510
5331	chr3	16489395	16504936	+	0	NA	intron (NM_015150, intron 2 of 9)	intron (NM_015150, intron 2 of 9)	58057	NM_015150	23180	Hs.98910	NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding	nan	1.034	1.147	0.231	0.597	0.393	0.371	0.644	0.062	2.224	1.312	1.441	0.301	0.063	0.070	0.191	0.173	0.692	0.387	0.749	0.834	4.485	1.592	0.120	0.088	0.535	0.790	0.960	0.504	0.675	0.448	0.090	0.151	3.150	3.816	0.308	0.664	3.390	1.335	0.545	0.046	0.981	0.010	0.371	1.441	0.019	2.345	0.026	0.392
3490	chr17	60546918	60562759	+	0	NA	Intergenic	Intergenic	-1291	NM_001330418	11011	Hs.445078	NM_006852	ENSG00000146872	TLK2	HsHPK|PKU-ALPHA	tousled like kinase 2	protein-coding	3.081	nan	2.941	1.798	3.219	2.074	2.155	1.369	0.447	1.533	0.710	3.802	3.901	2.005	0.150	3.444	3.416	2.821	4.356	3.584	3.446	3.643	2.117	7.883	8.119	1.566	nan	4.461	6.814	3.824	4.115	2.230	4.356	2.906	3.791	3.431	3.526	1.322	0.850	0.672	1.701	0.751	1.549	2.155	3.802	0.626	1.477	1.075	1.094
240	chr1	40156302	40170100	+	0	NA	Intergenic	LTR33|LTR|ERVL	-5819	NM_016257	51440	Hs.743975	NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding	9.989	1.065	nan	1.511	0.678	0.313	12.375	0.116	0.105	0.126	0.196	0.685	1.410	0.095	0.119	0.224	0.206	0.288	0.323	1.666	1.386	1.688	0.740	0.335	0.323	0.325	nan	26.413	24.781	0.743	0.566	0.322	nan	0.311	0.231	0.582	0.820	34.882	26.019	2.960	0.420	0.041	0.087	12.375	0.685	0.248	0.133	0.129	0.108
5462	chr3	111803209	111813191	+	0	NA	intron (NM_001171747, intron 1 of 3)	AluSp|SINE|Alu	3018	NM_024616	79669	Hs.434247	NM_024616	ENSG00000114529	C3orf52	TTMP	chromosome 3 open reading frame 52	protein-coding	1.296	nan	1.251	3.260	0.412	0.272	0.312	1.272	0.145	0.441	0.157	1.504	1.379	0.097	0.057	0.291	0.360	1.281	2.509	0.749	nan	9.061	2.536	1.059	1.215	nan	0.317	3.187	3.347	0.795	0.361	0.240	0.312	0.499	0.571	0.602	0.991	0.870	0.697	0.051	0.159	0.067	0.143	0.312	1.504	0.113	0.874	0.049	0.310
2209	chr12	129440234	129469040	+	0	NA	intron (NR_133646, intron 10 of 10)	intron (NR_133646, intron 10 of 10)	116658	NM_144669	144423	Hs.655668	NM_144669	ENSG00000151948	GLT1D1	-	glycosyltransferase 1 domain containing 1	protein-coding	0.525	0.984	0.657	0.046	1.045	0.463	0.754	0.052	0.067	0.526	0.365	1.880	2.048	0.030	0.109	0.518	0.443	0.148	0.184	4.180	3.673	nan	0.534	1.198	1.257	0.163	0.178	4.957	4.190	0.413	0.365	0.308	0.357	0.327	0.164	0.188	0.316	1.702	1.113	1.316	3.025	0.026	0.129	0.754	1.880	0.010	0.052	0.072	0.031
230	chr1	39317101	39330456	+	0	NA	intron (NM_022157, intron 1 of 6)	intron (NM_022157, intron 1 of 6)	1717	NM_022157	64121	Hs.532461	NM_022157	ENSG00000116954	RRAGC	GTR2|RAGC|TIB929	Ras related GTP binding C	protein-coding	12.385	nan	1.296	2.312	1.001	0.419	0.614	1.171	0.264	0.460	0.363	1.668	2.395	0.820	0.187	0.729	1.053	1.436	1.668	1.528	1.702	nan	0.317	1.319	1.463	1.374	1.772	5.967	7.858	nan	0.557	1.264	2.047	0.285	0.421	1.092	2.127	28.669	18.519	0.418	0.719	0.050	0.299	0.614	1.668	0.100	0.327	0.436	0.280
115	chr1	18497097	18531341	+	0	NA	intron (NM_032880, intron 1 of 9)	MLT1A1|LTR|ERVL-MaLR	79979	NM_032880	84966	Hs.212511	NM_032880	ENSG00000117154	IGSF21	-	immunoglobin superfamily member 21	protein-coding	1.489	0.724	nan	0.058	0.648	0.239	0.360	0.062	0.071	0.179	0.125	0.573	0.533	0.038	0.085	1.264	1.359	0.362	0.250	1.745	1.464	0.093	0.053	1.321	nan	1.132	nan	1.069	1.379	nan	2.396	0.410	0.429	0.085	0.135	1.380	4.468	1.221	0.855	0.137	0.356	0.020	0.028	0.360	0.573	0.791	0.286	0.151	0.733
2374	chr13	93867660	93897987	+	0	NA	intron (NM_005708, intron 1 of 8)	L3b|LINE|CR1	3762	NM_005708	10082	Hs.444329	NM_005708	ENSG00000183098	GPC6	OMIMD1	glypican 6	protein-coding	1.783	1.822	1.317	0.313	0.735	0.354	1.884	0.340	0.069	0.450	0.258	0.836	3.746	0.226	0.087	1.450	2.226	2.272	2.754	2.565	2.595	1.848	0.862	0.638	0.654	1.015	1.208	1.679	1.913	1.398	2.134	0.339	1.172	2.534	2.136	2.484	4.167	0.385	0.250	1.435	1.225	0.676	1.838	1.884	0.836	0.488	0.924	0.209	1.094
5882	chr4	41874258	41887474	+	0	NA	TTS (NR_104143)	TTS (NR_104143)	3762	NR_104143	101927074	Hs.611425	NR_104143	ENSG00000245870	LINC00682	-	long intergenic non-protein coding RNA 682	ncRNA	1.103	nan	nan	0.167	0.146	0.049	0.251	0.090	0.151	0.286	0.136	0.100	1.035	0.057	0.066	0.319	0.185	0.182	0.280	0.618	0.469	0.180	0.082	0.132	0.130	0.162	0.242	0.248	0.255	1.093	0.761	0.174	0.296	0.035	0.035	2.011	3.646	0.802	0.638	0.111	0.961		8.768	0.251	0.100	0.073	0.038	0.030	2.411
7606	chr8	17692177	17710075	+	0	NA	Intergenic	L1ME3|LINE|L1	-42700	NM_001001924	57509	Hs.7946	NM_020749	ENSG00000129422	MTUS1	ATBP|ATIP|ICIS|MP44|MTSG1	microtubule associated tumor suppressor 1	protein-coding	0.836	1.075	nan	0.074	1.749	0.906	0.368	0.361	0.081	0.429	0.258	0.870	0.316	0.048	0.135	0.398	0.254	1.525	5.282	0.971	nan	1.829	0.673	0.331	0.434	0.161	0.261	0.466	0.416	0.633	0.335	0.093	0.178	1.368	1.799	0.237	0.600	2.133	1.179	0.114	0.146	0.252	0.128	0.368	0.870	0.022	1.479	0.016	0.199
2319	chr13	60253165	60310245	+	0	NA	intron (NM_001042517, intron 27 of 27)	intron (NM_001042517, intron 27 of 27)	-305147	NR_046539	100874195	Hs.664101	NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA	nan	1.133	nan	0.086	0.190	0.101	0.291	0.179	0.070	0.066	0.085	0.141	0.389	0.040	0.097	0.567	0.307	0.153	0.340	0.494	0.547	3.830	1.401	0.129	0.134	0.196	0.242	0.215	0.198	0.404	0.168	0.227	0.310	0.606	0.674	1.089	3.090	0.202	0.188	0.041	0.106	0.100	0.394	0.291	0.141	0.092	0.029	0.070	0.278
1072	chr10	24746244	24779154	+	0	NA	exon (NM_001282770, exon 2 of 12)	exon (NM_001282770, exon 2 of 12)	7265	NM_001282770	56243	Hs.445885	NM_019590	ENSG00000120549	KIAA1217	SKT	KIAA1217	protein-coding	0.729	1.435	1.843	0.032	0.290	0.151	0.127	2.943	0.359	0.043	0.023	0.033	0.183	0.033	0.097	0.937	0.757	1.162	3.323	0.199	0.203	0.203	0.118	0.131	0.148	0.120	0.258	0.090	0.125	0.209	0.145	0.314	0.599	0.041	0.046	0.156	0.334	0.147	0.283	0.242	0.164	0.006	0.160	0.127	0.033	0.103	0.012	0.378	0.082
6035	chr4	141154921	141179685	+	0	NA	Intergenic	Intergenic	-11137	NM_032547	60592	Hs.480815	NM_032547	ENSG00000153130	SCOC	HRIHFB2072|SCOCO|UNC-69	short coiled-coil protein	protein-coding	2.591	2.590	2.435	4.518	5.642	2.979	1.139	1.068	0.137	1.944	1.037	3.953	4.770	0.101	0.078	1.257	1.838	0.737	1.078	5.057	4.034	5.109	1.442	0.498	0.576	2.456	3.362	5.712	4.841	4.707	5.421	1.055	1.764	3.588	3.300	1.546	3.160	2.648	1.482	3.247	3.109	1.056	1.529	1.139	3.953	0.710	1.484	1.301	0.928
1394	chr11	44605521	44634083	+	0	NA	intron (NM_002231, intron 3 of 9)	intron (NM_002231, intron 3 of 9)	32661	NM_001024844	3732	Hs.527778	NM_002231	ENSG00000085117	CD82	4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27	CD82 molecule	protein-coding	nan	1.064	1.568	0.046	0.389	0.235	0.089	0.209	0.158	0.224	0.161	0.105	2.197	0.087	0.099	0.561	0.704	0.239	0.407	1.702	1.812	0.498	0.202	0.115	0.145	0.933	1.426	0.466	0.511	1.118	0.896	0.251	0.269	0.155	0.215	0.250	nan	1.125	0.756	4.949	0.109	0.057	0.020	0.089	0.105	0.229	0.060	0.045	0.222
2772	chr14	101241929	101257141	+	0	NA	Intergenic	Intergenic	-31293	NR_039729	100616495		NR_039729	ENSG00000266461	MIR2392	-	microRNA 2392	ncRNA	1.573	1.593	0.541	0.112	1.416	0.591	1.914	0.089	0.191	0.205	0.186	2.947	5.269	0.050	0.100	0.202	0.088	0.183	0.193	5.131	5.671	4.220	2.367	0.040	0.067	0.120	0.326	2.319	4.185	5.164	4.455	0.157	0.290	2.866	2.002	0.330	0.398	2.089	1.200	5.201	1.139	0.615	1.643	1.914	2.947	0.490	1.792	0.065	0.051
4878	chr20	20569645	20595029	+	0	NA	exon (NM_020343, exon 16 of 40)	exon (NM_020343, exon 16 of 40)	110929	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic alpha subunit 2	protein-coding	1.887	1.572	nan	0.367	0.696	0.310	0.197	0.222	0.158	0.354	0.310	0.552	0.858	0.030	0.094	0.686	0.795	0.260	0.468	0.838	1.271	1.045	0.324	0.286	0.299	3.757	4.577	2.486	2.219	2.579	2.006	0.399	0.612	1.284	1.274	0.329	0.824	1.379	0.770	0.498	0.463	0.747	0.122	0.197	0.552	0.905	0.239	0.251	0.266
1277	chr11	1648242	1675045	+	0	NA	Intergenic	Intergenic	10610	NM_001001480	439915	Hs.653467	NM_001001480	ENSG00000185940	KRTAP5-5	KRTAP5-11|KRTAP5.5	keratin associated protein 5-5	protein-coding	0.748	1.095	0.452	0.353	2.513	1.212	0.422	0.067	0.083	0.640	0.406	5.540	1.903	0.049	0.063	0.441	0.447	0.162	0.233	4.965	4.879	1.450	0.718	0.169	0.193	0.155	0.253	0.175	0.265	0.455	0.699	0.314	0.313	1.314	1.099	0.083	0.122	1.115	0.755	0.271	0.678	0.372	0.054	0.422	5.540	0.051	0.056	0.063	0.014
7570	chr7_gl000195_random	28004	34710	+	0	NA	Intergenic	Intergenic	34683	NM_001322975	102723360	Hs.743984	NM_001322975	ENSG00000277991	LOC102723360	-	uncharacterized LOC102723360	protein-coding	9.908	nan	10.794	12.769	8.879	5.251	6.530	2.698	0.504	4.754	2.170	7.236	19.659	7.391	0.346	8.852	10.617	5.924	10.510	12.299	nan	11.487	4.086	11.703	12.361	9.490	12.323	4.356	3.884	17.500	21.290	4.959	7.469	7.420	5.569	9.385	11.796	6.973	nan	9.463	7.362	1.217	5.768	6.530	7.236	3.147	7.182	5.062	6.779
7597	chr8	12723167	12737269	+	0	NA	Intergenic	Intergenic	-61308	NR_015383	340357	Hs.434302	NR_015383	ENSG00000254813	LOC340357	-	uncharacterized LOC340357	ncRNA	2.325	1.644	nan	0.237	4.445	1.955	2.159	0.100	0.029	0.979	0.697	3.659	0.598	0.061	0.158	0.450	0.327	0.789	2.024	2.258	nan	1.644	0.780	0.451	0.448	6.717	6.740	0.067	0.096	1.481	1.034	0.124	0.240	2.692	2.411	0.707	1.555	3.919	1.805	0.056	0.885	1.116	0.214	2.159	3.659	0.587	0.072	0.043	0.326
5889	chr4	49111498	49113149	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	123664	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding	18.688	21.004	nan	7.890	14.000	7.304	10.126	5.222	27.854	5.655	12.635	4.765	16.274	3.112	11.613	7.590	3.118	2.951	3.883	7.463	13.276	2.725	2.157	4.294	4.316	6.837	10.596	4.748	5.360	12.861	3.270	2.479	4.380	2.789	5.910	3.851	6.624	3.595	4.353	1.207	8.993	3.225	3.140	10.126	4.765	2.060	3.201	2.598	3.602
2562	chr14	37124453	37162463	+	0	NA	intron (NM_006194, intron 4 of 4)	intron (NM_006194, intron 4 of 4)	16685	NM_006194	5083	Hs.132576	NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding	1.419	0.820	1.263	1.376	0.643	0.296	0.209	0.164	0.181	0.327	0.220	0.583	18.119	0.081	0.103	0.322	0.332	0.342	0.429	9.856	9.336	0.747	0.276	0.376	0.399	0.564	0.789	5.501	6.455	0.745	0.487	0.508	0.748	2.089	2.106	0.065	0.163	1.460	0.708	15.629	6.154	0.951	0.157	0.209	0.583	0.087	0.952	0.451	0.081
3951	chr19	5860933	5885117	+	0	NA	Intergenic	AluSg7|SINE|Alu	-2474	NM_002034	2527	Hs.631843	NM_002034	ENSG00000130383	FUT5	FUC-TV	fucosyltransferase 5	protein-coding	1.618	1.352	1.401	0.205	0.409	0.246	0.370	0.071	0.166	0.201	0.139	0.173	0.585	0.050	0.091	0.286	0.356	0.241	0.480	0.527	0.701	1.245	0.313	0.427	0.492	0.306	0.582	0.844	nan	1.455	1.047	0.302	0.353	3.696	4.698	0.332	0.483	1.297	0.819	0.073	0.121	1.720	0.033	0.370	0.173	0.964	0.331	0.057	0.087
3094	chr16	25887166	25910474	+	0	NA	intron (NM_006040, intron 1 of 1)	intron (NM_006040, intron 1 of 1)	-137738	NR_036146	100422923		NR_036146	ENSG00000265005	MIR548W	-	microRNA 548w	ncRNA	0.461	0.427	nan	0.052	0.525	0.268	0.214	0.045	0.049	0.054	0.078	0.061	0.227	0.024	0.073	0.314	0.236	0.072	0.083	0.112	0.140	nan	0.121	0.099	0.101	0.113	0.211	6.083	3.631	0.275	0.063	0.120	0.216	0.065	0.087	0.216	0.357	0.179	0.241	0.007	0.065	0.017	0.058	0.214	0.061	0.017	0.358	0.029	0.030
1865	chr12	23784011	23797604	+	0	NA	intron (NM_001261414, intron 12 of 16)	intron (NM_001261414, intron 12 of 16)	-53261	NM_178010	6660	Hs.434948	NM_006940	ENSG00000134532	SOX5	L-SOX5|L-SOX5B|L-SOX5F|LAMSHF	SRY-box 5	protein-coding	nan	nan	nan	2.694	3.345	1.651	1.693	0.045	0.071	0.589	0.302	3.896	0.376	0.088	0.168	0.389	0.186	1.526	0.802	4.720	5.890	3.649	1.363	1.340	1.337	1.143	1.271	0.451	0.450	0.568	0.288	0.245	0.442	1.413	2.233	0.437	0.924	0.516	0.339	0.025	0.246	0.400	1.143	1.693	3.896	0.072	0.007	0.205	0.175
8018	chr9	2837200	2845205	+	0	NA	intron (NM_014878, intron 1 of 17)	L1MD3|LINE|L1	2928	NM_014878	9933	Hs.493309	NM_014878	ENSG00000080608	PUM3	HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5	pumilio RNA binding family member 3	protein-coding	1.573	2.398	1.626	1.485	1.559	0.796	1.936	1.129	0.242	0.956	0.730	1.075	4.631	1.018	0.111	1.315	1.498	2.056	3.063	2.401	2.592	4.301	1.404	4.531	4.692	4.044	5.156	2.485	3.860	3.099	3.211	5.026	7.096	2.056	2.552	1.651	nan	3.582	1.951	0.438	1.219	0.298	0.497	1.936	1.075	0.484	0.693	7.827	0.425
1783	chr12	5069923	5112435	+	0	NA	Intergenic	L2b|LINE|L2	-61906	NM_002234	3741	Hs.150208	NM_002234	ENSG00000130037	KCNA5	ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1	potassium voltage-gated channel subfamily A member 5	protein-coding	0.696	nan	nan	1.363	2.409	1.303	1.639	0.045	0.064	1.244	0.533	2.873	2.739	0.054	0.096	0.175	0.087	0.117	0.180	nan	1.839	5.485	2.921	0.165	0.173	1.597	2.018	0.150	0.185	0.270	0.121	0.120	0.131	2.895	2.475	0.132	nan	1.091	0.594	0.052	1.231	1.101	0.095	1.639	2.873	0.009	0.021	0.023	0.073
4642	chr2	187556426	187585767	+	0	NA	intron (NM_177454, intron 1 of 7)	intron (NM_177454, intron 1 of 7)	12307	NM_177454	165215	Hs.28872	NM_177454	ENSG00000144369	FAM171B	KIAA1946	family with sequence similarity 171 member B	protein-coding	1.446	1.170	1.691	0.656	0.661	0.366	1.198	0.394	0.087	0.522	0.413	0.327	1.509	0.502	0.079	0.551	0.659	0.382	0.549	0.857	0.767	3.174	1.115	0.752	0.777	nan	2.077	0.819	0.995	0.735	0.679	0.249	0.604	1.896	2.302	0.837	nan	0.641	0.432	0.029	0.169	0.587	0.182	1.198	0.327	0.249	0.457	0.164	0.164
4181	chr2	3127248	3132811	+	0	NA	promoter-TSS (NR_110228)	promoter-TSS (NR_110228)	-231	NR_110228	101927554	Hs.638446	NR_110228	ENSG00000234423	LINC01250	-	long intergenic non-protein coding RNA 1250	ncRNA	0.941	0.580	0.963	0.174	1.056	0.760	0.091	0.082		2.553	1.540	0.387	0.856	0.076	0.082	0.914	2.202	0.425	0.437	2.278	1.453	0.580	0.262	0.223	0.276	0.534	0.880	5.404	4.711	0.969	0.982	0.321	0.371	0.112	0.161	0.577	0.845	2.879	1.765	0.126	0.274		0.172	0.091	0.387	0.977	5.700	0.053	0.270
4126	chr19	49117102	49128663	+	0	NA	promoter-TSS (NM_000979)	promoter-TSS (NM_000979)	92	NM_001204159	56848	Hs.528006	NM_020126	ENSG00000063176	SPHK2	SK 2|SK-2|SPK 2|SPK-2	sphingosine kinase 2	protein-coding	3.704	1.630	2.535	2.513	5.884	3.209	2.393	1.118	0.209	1.083	0.442	3.205	3.670	2.522	0.116	2.965	2.741	3.101	4.442	5.156	4.697	5.539	2.420	7.784	8.077	3.320	4.425	6.264	8.233	6.045	6.062	2.311	3.428	2.627	2.554	3.947	5.153	3.066	1.512	1.294	3.384	0.495	1.166	2.393	3.205	1.370	1.003	1.271	1.880
5090	chr21	32877811	32906778	+	0	NA	intron (NM_003253, intron 1 of 28)	L1MB3|LINE|L1	38996	NM_003253	7074	Hs.517228	NM_003253	ENSG00000156299	TIAM1	-	T-cell lymphoma invasion and metastasis 1	protein-coding	1.423	1.541	2.503	0.852	1.018	0.518	0.903	0.067	0.089	0.308	0.303	1.106	6.044	0.039	0.084	0.553	0.492	0.492	0.947	1.708	1.628	1.643	0.357	0.429	0.436	2.224	2.995	1.534	1.649	1.574	1.375	0.459	0.742	2.346	3.345	0.446	0.918	nan	1.367	0.697	1.082	0.866	0.150	0.903	1.106	0.385	0.292	0.510	0.240
3800	chr18	47806263	47815512	+	0	NA	exon (NM_014593, exon 9 of 15)	exon (NM_014593, exon 9 of 15)	-2743	NM_001204141	4152	Hs.405610	NM_002384	ENSG00000141644	MBD1	CXXC3|PCM1|RFT	methyl-CpG binding domain protein 1	protein-coding	nan	2.008	2.900	3.395	2.710	1.698	4.064	0.909	0.139	1.053	0.489	3.288	5.941	1.220	0.097	3.340	3.874	3.651	5.038	6.633	5.962	8.312	3.438	3.965	4.150	1.394	1.832	3.294	3.515	2.827	2.476	2.165	3.414	4.389	6.062	1.822	nan	5.146	2.453	1.986	2.125	0.843	1.889	4.064	3.288	0.589	1.628	1.520	1.029
6538	chr5	167357597	167380565	+	0	NA	intron (NM_001122679, intron 3 of 28)	AluSx|SINE|Alu	187140	NM_001080428	57451	Hs.631957	NM_001080428	ENSG00000145934	TENM2	ODZ2|TEN-M2|TNM2|ten-2	teneurin transmembrane protein 2	protein-coding	nan	0.572	2.378	0.046	0.195	0.092	0.180	0.073	0.028	0.061	0.111	0.026	0.237	3.572	0.155	0.238	0.164	2.037	3.588	0.116	0.181	0.136	0.050	0.077	0.085	0.137	0.230	0.121	0.110	0.359	0.201	0.351	0.407	0.663	0.908	0.247	0.774	0.168	0.212	0.002	0.051	0.143	0.055	0.180	0.026	0.021	0.035	0.340	0.154
4584	chr2	168881028	168912647	+	0	NA	intron (NM_013233, intron 14 of 17)	intron (NM_013233, intron 14 of 17)	-99183	NR_131227	105616981	Hs.512811	NR_131227		LOC105616981	-	uncharacterized LOC105616981	ncRNA	1.103	0.973	nan	0.256	0.413	0.193	0.334	0.159	0.081	0.263	0.171	0.398	0.418	0.028	0.092	0.329	0.292	0.264	0.325	0.423	0.410	1.269	0.485	0.382	0.440	0.531	0.632	0.471	0.634	0.503	0.317	0.233	0.374	0.529	0.391	1.381	5.472	0.664	0.502	0.077	0.059	0.106	0.216	0.334	0.398	0.043	0.019	0.110	0.402
1036	chr10	14168734	14196279	+	0	NA	intron (NR_134578, intron 2 of 3)	intron (NR_134578, intron 2 of 3)	66223	NR_120638	101928453	Hs.650212	NR_120638		LOC101928453	-	uncharacterized LOC101928453	ncRNA	nan	0.760	0.730	0.093	0.180	0.093	0.091	0.230	0.165	0.062	0.107	0.074	0.358	0.027	0.083	1.026	1.336	0.469	0.536	0.263	0.296	5.809	1.518	0.154	0.120	0.326	0.546	0.344	0.366	0.295	0.251	0.135	0.182	0.813	0.875	0.206	0.276	0.466	0.397	0.018	0.052	0.152	0.061	0.091	0.074	0.084	0.026	0.025	0.074
3492	chr17	61041968	61058624	+	0	NA	Intergenic	L2c|LINE|L2	28720	NR_030363	693218		NR_030363	ENSG00000207552	MIR633	MIRN633|hsa-mir-633	microRNA 633	ncRNA	1.580	nan	2.149	0.560	0.973	0.543	0.655	0.628	0.097	0.600	0.394	1.340	2.209	0.779	0.151	2.249	2.733	2.720	2.118	1.224	1.276	0.660	0.218	22.762	23.888	0.382	nan	1.702	2.666	1.527	1.432	1.112	2.087	0.185	0.219	0.820	1.184	1.090	0.721	0.163	1.355		0.705	0.655	1.340	0.217	0.573	1.123	0.268
1265	chr11	440673	452014	+	0	NA	Intergenic	Intergenic	-1925	NM_001329548	81490	Hs.12851	NM_030783	ENSG00000174915	PTDSS2	PSS2	phosphatidylserine synthase 2	protein-coding	1.752	3.420	1.819	2.634	2.382	1.523	1.914	0.601	0.271	1.381	0.627	4.623	5.030	1.167	0.079	2.859	4.173	1.879	2.966	4.245	3.535	6.328	1.944	4.511	4.577	1.448	2.245	5.737	7.095	2.862	3.332	1.803	2.783	3.881	2.489	1.301	1.917	2.397	1.439	1.805	8.047	0.595	0.329	1.914	4.623	0.415	1.408	1.799	0.865
2065	chr12	86164344	86179794	+	0	NA	Intergenic	Intergenic	58249	NM_005447	9182	Hs.527881	NM_005447	ENSG00000198774	RASSF9	P-CIP1|PAMCI|PCIP1	Ras association domain family member 9	protein-coding	1.007	0.782	1.187	0.849	2.339	1.267	0.108	0.327	0.127	1.110	0.737	1.041	2.745	0.064	0.158	0.522	0.663	0.301	0.625	0.445	0.428	5.891	2.131	0.494	0.500	8.139	8.252	1.695	1.132	0.411	0.168	1.374	1.480	3.604	5.209	0.314	0.548	1.970	1.083	0.007	0.175	1.112	0.234	0.108	1.041	0.075	0.342	0.500	0.056
4150	chr19	55888717	55899219	+	0	NA	intron (NM_001190764, intron 1 of 1)	intron (NM_001190764, intron 1 of 1)	1659	NM_001190764	388564	Hs.534672	NM_001190764	ENSG00000233493	TMEM238	-	transmembrane protein 238	protein-coding	2.829	2.119	3.459	2.781	3.795	1.677	2.723	1.042	0.138	1.706	0.899	2.909	4.410	2.724	0.088	4.838	6.063	2.660	4.039	4.942	4.869	6.208	2.810	2.798	2.669	2.861	4.044	5.632	8.402	5.373	6.288	2.062	4.331	3.204	2.980	2.798	4.395	2.695	1.652	2.599	2.923	0.768	1.725	2.723	2.909	1.241	1.821	1.491	1.317
544	chr1	152005526	152022480	+	0	NA	Intergenic	L2c|LINE|L2	-4492	NM_005620	6282	Hs.417004	NM_005620	ENSG00000163191	S100A11	HEL-S-43|MLN70|S100C	S100 calcium binding protein A11	protein-coding	nan	nan	1.705	0.082	8.858	4.285	0.452	2.645	0.416	0.201	0.199	0.311	0.598	0.721	0.149	0.352	0.186	0.594	1.794	0.316	nan	0.265	0.077	0.223	0.221	0.347	0.623	3.814	4.507	0.485	0.349	1.345	2.196	3.752	3.676	0.419	0.975	0.263	0.401	5.603	2.097	0.751	0.688	0.452	0.311	0.914	1.523	1.789	0.124
4696	chr2	210382018	210396118	+	0	NA	intron (NM_001039538, intron 2 of 14)	(T)n|Simple_repeat|Simple_repeat	-55335	NM_031847	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding	nan	1.618	nan	0.200	0.703	0.375	0.372	1.869	0.068	0.423	0.256	0.500	1.032	0.331	0.092	0.371	0.318	0.448	0.760	0.414	0.594	1.906	1.124	0.347	0.374	5.340	5.879	0.483	nan	3.069	1.708	0.101	0.296	1.356	2.790	0.772	1.822	0.328	0.306	0.273	0.189	0.730	0.664	0.372	0.500	0.172	0.101	0.063	0.910
4370	chr2	56339924	56347604	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-26247	NR_135590	101927165	Hs.679803	NR_135590		LINC01813	-	long intergenic non-protein coding RNA 1813	ncRNA	1.137	nan	1.045	0.148	0.391	0.293	0.252	0.108	0.084	0.982	0.269	0.494	0.455	0.090	0.146	5.766	9.933	5.964	4.736	0.557	0.703	2.803	0.930	2.854	2.897	0.413	0.499	0.269	0.368	0.686	0.434	3.363	5.517	0.557	0.633	0.648	1.276	1.579	0.923	0.058	0.332	0.111	0.043	0.252	0.494	0.025	0.133	3.683	0.260
4527	chr2	142831157	142837876	+	0	NA	intron (NM_018557, intron 1 of 90)	intron (NM_018557, intron 1 of 90)	54754	NM_018557	53353	Hs.656461	NM_018557	ENSG00000168702	LRP1B	LRP-1B|LRP-DIT|LRPDIT	LDL receptor related protein 1B	protein-coding	0.765	nan	0.683	0.039	0.299	0.072	0.536	0.094	0.024	0.070	0.074	0.071	0.372	0.048	0.077	0.401	0.296	7.103	7.209	0.260	0.214	0.092	0.074	0.130	0.141	0.569	1.026	0.257	0.304	0.486	0.183	0.106	0.335	0.242	0.211	0.266	0.390	0.086	0.280	0.025		0.127	0.058	0.536	0.071	0.015	0.015	0.117	0.074
4634	chr2	183277565	183294067	+	0	NA	intron (NM_001003683, intron 2 of 14)	L5|LINE|RTE	5959	NM_001258313	5136	Hs.191046	NM_005019	ENSG00000115252	PDE1A	CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A	phosphodiesterase 1A	protein-coding	1.007	0.919	0.810	0.160	0.285	0.132	0.101	0.644	0.098	0.085	0.071	0.116	0.273	0.052	0.068	0.268	0.181	0.219	0.241	0.238	0.248	0.281	0.140	0.384	0.437	5.864	6.006	0.672	0.768	0.774	0.366	0.159	0.287	0.046	0.064	0.513	nan	0.368	0.293	0.046	0.085	0.012	0.058	0.101	0.116	0.036	0.012	0.060	0.247
1196	chr10	103198203	103229226	+	0	NA	intron (NM_001256856, intron 2 of 13)	MER58A|DNA|hAT-Charlie	99924	NM_033637	8945	Hs.643802	NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding	nan	nan	1.050	0.177	0.408	0.274	1.315	0.110	0.083	0.182	0.186	0.291	0.452	0.070	0.096	0.311	0.308	0.244	0.347	0.542	0.802	0.837	0.252	0.158	0.170	2.252	nan	0.634	0.787	0.428	0.258	0.112	0.211	1.649	2.014	2.255	nan	1.093	0.541	0.033	0.282	0.548	0.254	1.315	0.291	0.010	0.049	0.041	1.939
8259	chr9	124042736	124051816	+	0	NA	non-coding (NR_103560, exon 1 of 1)	non-coding (NR_103560, exon 1 of 1)	532	NR_103560	57000	Hs.522373	NM_020250	ENSG00000235865	GSN-AS1	C9orf31|MOST2	GSN antisense RNA 1	ncRNA	nan	nan	1.106	2.962	1.177	0.515	4.186	2.324	0.228	1.154	0.251	1.551	5.453	0.143	0.078	0.728	1.409	2.866	5.351	0.582	0.575	2.114	0.456	1.406	1.362	1.092	nan	5.705	8.249	0.805	0.572	0.491	0.558	5.468	7.879	0.535	1.653	nan	0.786	2.261	0.222	1.358	0.705	4.186	1.551	1.525	0.649	0.262	0.349
7927	chr8	128655923	128659434	+	0	NA	Intergenic	Intergenic	88535	NR_117102	100270680	Hs.333720	NR_117101	ENSG00000249375	CASC11	CARLo-7|LINC00990|TCONS_00014535	cancer susceptibility candidate 11 (non-protein coding)	ncRNA	22.474	11.806	20.608	0.459	1.114	0.374	0.145	0.215	0.045	0.179	0.166	0.102	nan	0.125	0.093	0.447	0.550	0.840	1.593	0.834	0.799	2.804	0.665	nan	nan	43.817	45.785	5.708	6.518	95.099	80.157	0.491	1.080	2.879	2.683	52.647	68.564	0.869	0.585	0.063	0.397	1.226	0.873	0.145	0.102	7.950	0.224	0.553	85.790
7050	chr6	152677644	152703433	+	0	NA	intron (NM_182961, intron 60 of 145)	intron (NM_182961, intron 60 of 145)	-11127	NR_120501	100505475	Hs.571203	NR_120501		SYNE1-AS1	-	SYNE1 antisense RNA 1	ncRNA	nan	0.960	1.054	0.102	0.194	0.181	0.112	0.360	0.118	0.061	0.067	0.028	0.238	0.336	0.113	0.333	0.175	0.478	0.851	0.209	nan	0.383	0.177	0.212	0.185	0.077	0.138	0.243	0.256	1.603	1.283	0.095	0.125	0.071	0.097	1.744	nan	0.226	0.281	0.020	0.059	0.011	0.055	0.112	0.028	0.004	0.225	0.019	0.906
239	chr1	40037040	40044270	+	0	NA	intron (NM_003819, intron 1 of 15)	intron (NM_003819, intron 1 of 15)	1866	NM_001135654	8761	Hs.169900	NM_003819	ENSG00000090621	PABPC4	APP-1|APP1|PABP4|iPABP	poly(A) binding protein cytoplasmic 4	protein-coding	22.043	2.148	nan	6.215	2.215	1.177	2.296	1.413	0.289	2.365	1.185	5.330	3.754	2.135	0.125	2.059	2.450	2.559	4.006	5.341	5.127	2.228	0.735	5.247	5.020	2.303	nan	12.555	15.357	3.719	3.694	3.469	nan	1.256	1.552	2.574	3.184	3.381	1.775	1.314	2.210	0.160	1.636	2.296	5.330	0.552	0.923	1.366	1.292
2635	chr14	61080488	61133626	+	0	NA	TTS (NR_126480)	TTS (NR_126480)	1123	NR_126480	104548971		NR_126480		SALRNA1	SAL-RNA1|XLOC_023166	senescence associated long non-coding RNA 1	ncRNA	nan	nan	1.718	2.484	1.859	1.057	2.643	0.825	0.190	0.219	0.195	4.532	2.441	0.436	0.132	0.744	0.791	0.777	1.092	8.036	6.987	0.858	0.260	nan	1.877	0.377	0.678	3.375	nan	1.471	1.342	1.004	2.000	0.915	0.806	0.245	0.565	0.988	0.715	4.756	5.948	0.133	3.475	2.643	4.532	0.348	0.444	1.030	0.097
269	chr1	43854429	43872473	+	0	NA	intron (NM_015284, intron 1 of 70)	AluSx|SINE|Alu	7895	NM_015284	23334	Hs.643560	NM_015284	ENSG00000198198	SZT2	C1orf84|EIEE18|KIAA0467|SZT2A|SZT2B	seizure threshold 2 homolog (mouse)	protein-coding	nan	1.102	nan	0.789	0.846	0.470	0.639	0.690	0.232	0.706	0.397	1.097	1.711	0.919	0.114	0.830	0.920	1.247	1.681	2.083	1.833	0.928	0.376	1.346	1.497	1.092	nan	nan	4.347	1.097	0.819	1.155	nan	0.366	0.382	0.852	1.780	2.695	1.102	0.703	0.818	0.095	0.402	0.639	1.097	0.162	0.304	0.405	0.273
363	chr1	68566509	68578415	+	0	NA	intron (NR_040077, intron 6 of 9)	intron (NR_040077, intron 6 of 9)	-55148	NM_004675	9077	Hs.194695	NM_004675	ENSG00000162595	DIRAS3	ARHI|NOEY2	DIRAS family GTPase 3	protein-coding	1.138	0.753	nan	0.158	0.703	0.222	2.577	0.239	0.121	0.212	0.138	0.563	0.968	0.037	0.094	0.387	0.248	0.366	0.409	0.468	0.518	7.533	3.700	0.368	0.391	nan	nan	0.390	nan	0.472	0.266	0.188	0.256	0.844	0.921	0.429	0.764	0.845	0.721	0.019	0.090	0.168	0.072	2.577	0.563	0.033	0.077	0.059	0.222
7961	chr8	140783482	140791863	+	0	NA	intron (NM_031466, intron 21 of 22)	intron (NM_031466, intron 21 of 22)	-72373	NM_001282534	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding	1.986	0.589	nan	0.611	2.657	1.568	0.244	0.053	0.078	0.094	0.019	1.730	1.245	0.053	0.056	0.337	0.371	0.185	0.289	nan	1.216	nan	0.567	0.458	0.409	0.318	0.530	2.367	2.005	0.940	0.781	0.362	0.583	0.271	0.434	0.362	0.411	0.704	0.518	0.490	1.687	0.055	0.102	0.244	1.730	0.302	10.951	0.208	0.059
4264	chr2	25585157	25601821	+	0	NA	Intergenic	MER4E1|LTR|ERV1	-28030	NM_175630	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding	1.278	1.279	1.560	1.169	0.606	0.269	0.546	0.156	0.097	1.747	0.799	0.442	2.792	0.199	0.144	0.643	0.988	0.808	1.217	1.303	1.350	2.310	0.770	1.214	1.256	0.752	1.289	1.993	nan	0.710	0.433	0.505	0.644	0.704	0.632	0.638	1.095	2.676	1.141	4.812	1.003	0.212	0.578	0.546	0.442	0.423	1.543	0.230	0.269
4573	chr2	164447834	164483885	+	0	NA	3' UTR (NM_001321825, exon 2 of 2)	3' UTR (NM_001321825, exon 2 of 2)	126658	NM_018086	55137	Hs.593650	NM_018086	ENSG00000182263	FIGN	-	fidgetin, microtubule severing factor	protein-coding	1.029	0.862	nan	0.146	0.677	0.325	0.131	0.124	0.067	0.316	0.188	0.065	0.340	0.370	0.082	0.675	0.389	2.799	1.458	0.397	0.434	0.107	0.063	0.257	0.238	0.477	0.703	0.278	0.311	0.406	0.186	0.208	0.292	1.979	2.362	0.763	1.733	0.453	0.374	0.023	0.079	0.518	0.011	0.131	0.065	0.008	0.038	0.066	0.288
4140	chr19	50422202	50429461	+	0	NA	intron (NM_001193357, intron 1 of 1)	intron (NM_001193357, intron 1 of 1)	-6128	NM_012068	22809	Hs.9754	NM_012068	ENSG00000169136	ATF5	ATFX|HMFN0395	activating transcription factor 5	protein-coding	1.444	0.770	1.053	0.333	13.275	7.187	1.740	0.237	0.140	0.353	0.080	2.287	0.957	1.641	0.100	1.880	2.943	0.477	0.799	4.708	4.364	0.758	0.290	3.621	3.763	1.045	1.405	0.614	0.787	0.874	0.936	5.050	5.828	0.418	0.603	0.410	1.485	1.008	0.488	2.537	3.198	0.144	3.236	1.740	2.287	1.869	0.161	2.537	0.269
4876	chr20	20410750	20490662	+	0	NA	intron (NM_020343, intron 37 of 39)	intron (NM_020343, intron 37 of 39)	101941	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding	1.967	1.713	nan	0.494	3.273	1.678	1.218	0.174	0.110	0.908	0.567	1.243	0.766	0.037	0.086	1.423	1.775	0.614	0.617	0.921	1.017	3.778	1.278	0.308	0.320	3.149	4.293	1.548	1.462	3.920	3.435	0.950	1.535	3.789	4.690	0.641	1.419	1.815	0.924	0.361	0.729	1.705	0.686	1.218	1.243	1.530	1.155	0.947	0.492
1449	chr11	62357870	62372962	+	0	NA	intron (NM_001330292, intron 6 of 17)	MER91C|DNA|hAT-Tip100	3348	NM_001330292	9219	Hs.173043	NM_004739	ENSG00000149480	MTA2	MTA1L1|PID	metastasis associated 1 family member 2	protein-coding	nan	2.182	2.088	3.931	3.362	1.690	3.168	1.265	0.181	1.510	0.621	2.747	5.349	2.922	0.140	6.912	6.762	4.211	5.573	6.176	5.769	4.532	1.818	5.183	5.620	2.978	4.231	4.965	7.521	3.727	4.080	3.332	5.753	3.308	3.591	3.219	4.136	2.504	1.112	2.420	2.744	0.699	1.631	3.168	2.747	1.288	1.674	2.150	1.178
7855	chr8	104227705	104234785	+	0	NA	intron (NM_024812, intron 2 of 2)	intron (NM_024812, intron 2 of 2)	-46877	NR_109954	100499183	Hs.654812	NR_034092	ENSG00000247081	BAALC-AS1	-	BAALC antisense RNA 1	ncRNA	1.306	nan	nan	0.209	0.494	0.338	0.143	0.315	0.113	0.667	0.164	0.239	0.583		0.123	0.453	0.487	0.179	0.501	0.672	0.574	12.452	3.491	0.343	0.257	0.637	nan	0.969	nan	nan	0.218	0.564	0.711	0.998	1.175	0.395	nan	2.277	1.133	0.024	0.113	0.226	0.111	0.143	0.239	0.069	4.190	0.389	0.179
7847	chr8	103106978	103144019	+	0	NA	intron (NM_001040624, intron 1 of 7)	intron (NM_001040624, intron 1 of 7)	11064	NM_001040624	83988	Hs.492427	NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding	1.499	nan	nan	4.170	5.320	2.715	0.546	0.125	0.104	1.158	0.552	1.762	1.953	0.047	0.093	0.345	0.358	0.278	0.310	2.859	2.721	nan	3.646	0.441	0.479	0.456	nan	8.882	11.331	nan	0.272	0.298	0.451	3.258	2.954	0.121	nan	2.018	1.224	0.305	0.683	0.875	0.172	0.546	1.762	0.045	0.751	0.056	0.093
2873	chr15	49086229	49105242	+	0	NA	intron (NM_014985, intron 2 of 25)	intron (NM_014985, intron 2 of 25)	7608	NM_014985	22995	Hs.443005	NM_014985	ENSG00000103995	CEP152	MCPH4|MCPH9|SCKL5	centrosomal protein 152	protein-coding	1.272	1.319	nan	0.445	1.727	0.945	0.776	1.033	0.085	0.693	0.420	0.615	1.657	0.371	0.107	0.763	0.869	0.944	1.203	1.295	1.341	2.013	0.527	0.606	0.556	1.573	nan	1.069	1.241	2.068	1.775	0.448	0.817	3.044	3.670	0.884	1.739	1.956	1.070	0.806	0.667	0.469	0.292	0.776	0.615	0.245	0.524	0.161	0.296
6757	chr6	39269674	39338593	+	0	NA	3' UTR (NM_001289024, exon 10 of 10)	3' UTR (NM_001289024, exon 10 of 10)	-13803	NM_001135106	83795	Hs.287765	NM_032115	ENSG00000095981	KCNK16	K2p16.1|TALK-1|TALK1	potassium two pore domain channel subfamily K member 16	protein-coding	nan	0.791	nan	0.300	0.414	0.257	0.174	0.139	0.108	0.387	0.179	0.057	5.657	0.049	0.084	0.459	0.395	0.184	nan	nan	1.041	3.681	1.268	0.395	0.428	0.442	0.745	3.258	2.822	0.919	0.770	0.252	0.303	0.171	0.149	0.328	0.793	2.129	1.171	2.496	0.602	0.057	0.022	0.174	0.057	0.294	0.265	0.067	0.191
1314	chr11	12688752	12704565	+	0	NA	intron (NM_021961, intron 1 of 12)	CpG	689	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding	1.733	nan	3.747	2.896	1.436	0.949	1.578	1.804	0.192	1.786	0.938	5.167	6.036	1.337	0.099	nan	2.796	1.769	2.901	6.232	5.859	2.558	0.976	3.398	3.267	2.476	nan	1.820	3.462	1.830	1.690	0.841	1.762	3.125	3.442	1.669	2.673	2.316	nan	4.335	2.205	0.886	1.196	1.578	5.167	0.264	0.627	0.770	0.486
2748	chr14	95713590	95734055	+	0	NA	intron (NM_024734, intron 1 of 12)	intron (NM_024734, intron 1 of 12)	62423	NM_024734	79789	Hs.301478	NM_024734	ENSG00000165959	CLMN	-	calmin	protein-coding	1.403	2.872	nan	0.382	2.102	1.178	1.894	2.286	0.577	0.268	0.149	1.010	2.776	0.074	0.131	1.440	2.289	1.358	4.193	0.788	0.841	1.893	0.441	1.568	1.653	0.172	0.368	1.287	1.803	0.650	0.403	4.157	5.773	0.692	0.709	0.731	1.582	nan	0.967	0.141	0.882	0.103	0.159	1.894	1.010	0.068	0.049	7.070	0.326
1798	chr12	6928760	6939805	+	0	NA	intron (NM_019858, intron 2 of 4)	intron (NM_019858, intron 2 of 4)	-3256	NM_014262	10536	Hs.631655	NM_014262	ENSG00000110811	P3H3	GRCB|HSU47926|LEPREL2	prolyl 3-hydroxylase 3	protein-coding	4.142	nan	nan	1.942	1.574	0.945	3.115	0.133	0.020	1.108	0.593	1.735	4.208	2.208	0.125	0.792	1.927	1.163	2.105	nan	5.915	6.436	2.419	1.761	1.812	3.794	5.476	1.757	2.107	3.144	3.164	1.383	2.933	1.924	1.296	3.114	nan	1.177	0.610	2.233	3.692	0.568	0.520	3.115	1.735	5.076	1.023	1.319	2.701
5102	chr21	35570159	35581624	+	0	NA	Intergenic	L2a|LINE|L2	22913	NR_027266	114036	Hs.720230	NM_153751	ENSG00000227456	LINC00310	C21orf82|NCRNA00310	long intergenic non-protein coding RNA 310	ncRNA	1.666	1.125	4.047	0.759	0.387	0.223	0.588	0.705	0.183	0.342	0.344	0.210	2.013	0.497	0.075	0.551	0.764	0.341	0.328	1.065	1.099	2.519	0.390	0.620	0.614	1.606	1.889	0.951	1.250	5.207	5.469	0.656	0.903	4.690	6.312	0.875	2.230	nan	2.153	7.665	0.353	1.763	0.236	0.588	0.210	0.896	0.991	0.193	0.762
2535	chr14	32403949	32421160	+	0	NA	Intergenic	Intergenic	133351	NR_027263	84837	Hs.496755	NM_032751		ARHGAP5-AS1	C14orf128	ARHGAP5 antisense RNA 1 (head to head)	ncRNA	2.479	0.920	2.030	0.542	0.778	0.344	0.485	1.090	0.290	0.274	0.196	1.274	1.250	0.100	0.080	0.181	0.156	0.340	0.749	1.235	1.219	2.832	0.763	0.287	0.306	3.958	5.097	0.999	1.175	1.351	1.175	0.203	0.334	1.600	1.823	0.681	1.432	1.219	1.095	0.052	0.186	0.443	0.909	0.485	1.274	0.854	1.254	0.144	0.263
522	chr1	150037342	150041133	+	0	NA	promoter-TSS (NM_001279353)	promoter-TSS (NM_001279353)	-113	NM_007259	11311	Hs.443750	NM_007259	ENSG00000136631	VPS45	H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A	vacuolar protein sorting 45 homolog	protein-coding	nan	nan	6.694	4.655	5.694	3.310	4.614	5.242	0.042	4.590	2.088	5.806	20.394	5.707	0.125	7.295	6.797	10.460	13.942	13.313	nan	8.098	3.406	9.633	9.966	9.475	10.529	7.603	11.544	9.220	8.766	7.423	13.114	7.122	6.538	8.320	8.777	4.344	2.240	4.066	6.236	1.192	2.949	4.614	5.806	1.203	6.694	4.450	2.223
7817	chr8	98016030	98029597	+	0	NA	intron (NM_016134, intron 5 of 7)	intron (NM_016134, intron 5 of 7)	267363	NM_033512	85453	Hs.173094	NM_033512	ENSG00000180543	TSPYL5	-	TSPY like 5	protein-coding	6.035	3.532	5.654	0.222	0.397	0.201	0.151	0.410	0.120	0.046	0.060	0.348	0.410	0.048	0.118	0.310	0.152	0.325	nan	0.502	0.562	0.618	0.246	0.305	0.251	0.300	0.592	0.727	0.768	0.428	0.203	0.136	0.328	0.131	0.141	5.942	13.874	0.331	0.386	0.037	0.131	0.041	0.060	0.151	0.348		0.045	0.051	4.152
1423	chr11	57433628	57441990	+	0	NA	intron (NM_015457, intron 1 of 11)	AluSx|SINE|Alu	2335	NM_015457	25921	Hs.27239	NM_015457	ENSG00000156599	ZDHHC5	DHHC5|ZNF375	zinc finger DHHC-type containing 5	protein-coding	2.546	2.576	1.815	3.516	3.422	1.570	1.822	1.654	0.165	1.360	0.707	2.646	6.696	2.994	0.190	5.374	5.950	5.483	7.196	5.411	5.859	4.777	3.181	8.927	9.556	3.366	3.784	5.214	7.200	4.395	4.383	4.727	6.717	3.663	4.506	2.939	3.604	2.286	1.331	2.247	2.231	0.683	1.053	1.822	2.646	1.070	1.093	1.430	0.931
2412	chr13	102563349	102582080	+	0	NA	intron (NM_001321945, intron 2 of 5)	MIR|SINE|MIR	-3719	NM_004115	2259	Hs.508616	NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding	1.308	0.904	0.664	1.608	4.244	2.490	1.836	0.040	0.069	1.718	0.701	2.230	12.321	0.064	0.072	1.035	0.734	0.162	0.239	5.194	3.988	9.673	6.957	0.114	0.161	2.344	nan	0.996	2.454	0.661	0.640	0.126	0.232	3.259	2.828	0.775	nan	1.106	0.731	9.990	5.390	0.877	1.229	1.836	2.230	0.145	2.525	0.031	0.171
7116	chr7	764946	778245	+	0	NA	intron (NM_017802, intron 2 of 12)	intron (NM_017802, intron 2 of 12)	-4282	NM_001164759	5575	Hs.520851	NM_002735	ENSG00000188191	PRKAR1B	PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding	2.093	1.327	3.313	2.370	0.581	0.444	1.220	0.315	0.180	1.193	0.579	2.066	nan	1.154	0.209	2.210	1.645	0.899	nan	4.147	4.509	nan	0.703	3.826	3.914	1.130	1.703	nan	1.656	1.175	1.457	0.705	1.135	1.114	0.932	1.164	1.243	2.925	1.401	1.182	0.500	0.126	0.424	1.220	2.066	0.766	2.808	0.202	0.445
6917	chr6	118296232	118317201	+	0	NA	intron (NM_001029858, intron 1 of 7)	intron (NM_001029858, intron 1 of 7)	78027	NM_001029858	222553	Hs.654841	NM_001029858	ENSG00000196376	SLC35F1	C6orf169|dJ230I3.1	solute carrier family 35 member F1	protein-coding	nan	0.776	nan	0.097	0.149	0.084	0.117	0.101	0.061	0.075	0.067	0.040	0.324	0.037	0.131	0.492	0.478	0.364	0.437	0.450	nan	nan	0.085	0.270	0.245	0.334	nan	0.362	0.332	0.757	0.649	0.136	0.277	0.046	0.060	0.200	nan	0.302	0.348	4.516	0.089	0.023	0.015	0.117	0.040	0.032	0.019	0.090	0.024
2017	chr12	69631721	69636422	+	0	NA	intron (NM_007007, intron 1 of 9)	CpG	754	NM_007007	11052	Hs.369606	NM_007007	ENSG00000111605	CPSF6	CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	4.989	2.910	2.677	4.659	4.586	2.119	5.893	2.138	0.205	2.658	1.621	4.434	8.774	2.470	0.043	5.867	5.503	10.445	11.222	12.792	nan	7.853	4.460	19.741	19.520	3.799	4.564	8.471	13.250	7.311	9.345	4.236	9.042	3.493	3.477	5.640	3.978	4.619	2.727	1.763	4.757	0.665	2.495	5.893	4.434	0.868	2.441	2.255	0.861
4031	chr19	36133305	36140502	+	0	NA	Intergenic	AluJr|SINE|Alu	-2222	NM_001863	1340	Hs.431668	NM_001863	ENSG00000126267	COX6B1	COX6B|COXG|COXVIb1	cytochrome c oxidase subunit 6B1	protein-coding	3.486	2.644	3.043	5.325	2.323	1.351	1.525	1.089	0.178	0.992	0.521	1.561	18.474	2.771	0.106	2.143	2.688	2.891	3.797	3.676	2.938	4.148	1.760	3.193	3.665	2.343	2.897	4.325	5.514	nan	3.400	2.828	4.304	2.554	2.492	2.248	3.742	2.211	1.027	1.991	4.195	0.437	1.010	1.525	1.561	0.674	2.031	2.134	1.223
2661	chr14	69247371	69267221	+	0	NA	intron (NM_004926, intron 1 of 1)	intron (NM_004926, intron 1 of 1)	3335	NM_004926	677	Hs.85155	NM_004926	ENSG00000185650	ZFP36L1	BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1	ZFP36 ring finger protein like 1	protein-coding	3.781	2.457	3.910	1.920	0.451	0.249	1.323	4.500	0.509	0.191	0.123	0.585	3.396	6.532	0.188	0.290	0.287	4.418	7.778	0.491	0.560	0.843	0.314	9.338	9.522	0.875	1.257	1.263	nan	0.857	0.488	0.332	0.425	0.758	0.654	0.684	1.339	1.011	nan	1.781	0.090	0.073	0.256	1.323	0.585	0.234	0.381	0.134	0.503
2884	chr15	57587995	57620512	+	0	NA	Intergenic	MamRep434|DNA|TcMar-Tigger	-7083	NR_120337	101928611	Hs.569495	NR_120337		LINC01413	-	long intergenic non-protein coding RNA 1413	ncRNA	1.001	0.964	1.365	1.731	6.118	2.984	0.726	0.320	0.107	0.459	0.359	3.565	6.560	0.130	0.072	0.800	1.262	1.413	0.934	3.525	3.347	4.552	1.519	0.366	0.443	0.433	0.732	4.301	4.895	3.302	3.043	1.262	2.276	2.923	2.602	0.456	1.039	2.270	1.011	0.839	1.967	0.774	1.159	0.726	3.565	0.964	0.775	2.636	0.284
3841	chr18	55802019	55817391	+	0	NA	intron (NM_001144964, intron 1 of 30)	intron (NM_001144964, intron 1 of 30)	-6860	NM_001144969	23327	Hs.185677	NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding	nan	1.000	1.115	0.400	0.402	0.261	0.449	0.122	0.073	0.172	0.119	0.227	0.503	0.105	0.079	0.655	0.828	1.280	2.169	0.902	0.996	5.436	1.194	1.054	1.130	0.310	0.625	2.112	1.937	0.434	0.318	0.387	0.573	0.471	0.918	0.446	1.109	nan	1.718	0.087	0.265	0.092	0.072	0.449	0.227	0.098	0.119	0.084	0.323
1324	chr11	15988055	15993507	+	0	NA	TTS (NR_106721)	TTS (NR_106721)	386	NR_106721	102464826		NR_106721	ENSG00000110693	MIR6073	hsa-mir-6073	microRNA 6073	ncRNA	1.535	nan	2.688	3.500	3.222	1.865	0.491	1.195	0.088	0.116	0.183	1.060	2.047	0.001	0.097	nan	0.522	11.672	12.290	0.890	0.956	0.873	0.233	1.684	1.956	1.624	nan	3.094	4.717	0.487	0.242	1.433	2.407	1.627	3.163	0.638	1.313	0.802	nan	1.108	0.281	0.106	0.072	0.491	1.060		1.748	0.581	0.726
8371	chrX	15509288	15539439	+	0	NA	intron (NM_203281, intron 1 of 18)	intron (NM_203281, intron 1 of 18)	-1068	NM_001721	660	Hs.495731	NM_001721	ENSG00000102010	BMX	ETK|PSCTK2|PSCTK3	BMX non-receptor tyrosine kinase	protein-coding	0.945	nan	0.716	0.397	0.307	0.154	0.102	0.259	0.117	0.166	0.138	0.202	0.545	0.105	0.055	1.439	1.381	3.329	1.599	0.880	0.945	1.289	0.297	7.251	7.468	0.673	1.008	1.018	1.390	0.843	0.489	3.198	3.243	0.416	0.672	0.748	0.793	0.506	0.471	0.206	0.122	0.057	0.240	0.102	0.202	0.151	0.286	2.571	0.254
5496	chr3	117229847	117353146	+	0	NA	Intergenic	Intergenic	651218	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA	0.831	nan	0.670	0.154	0.660	0.360	0.342	0.090	0.102	0.174	0.170	0.171	0.474	4.709	0.172	0.442	0.309	0.344	0.379	0.451	nan	0.447	0.202	0.269	0.264	nan	0.694	0.674	0.604	0.765	0.339	0.104	0.176	0.048	0.071	0.413	0.896	1.311	0.843	1.095	0.551	0.014	0.248	0.342	0.171	0.012	0.114	0.028	0.224
6794	chr6	47039585	47052299	+	0	NA	Intergenic	Intergenic	-35843	NM_153840	266977	Hs.733762	NM_025048	ENSG00000153292	ADGRF1	GPR110|KPG_012|PGR19|hGPCR36	adhesion G protein-coupled receptor F1	protein-coding	1.126	0.884	0.803	0.179	0.362	0.138	0.337	0.846	0.126	0.152	0.084	0.056	0.351	0.060	0.126	2.409	3.024	10.324	8.974	0.271	0.330	0.363	0.102	0.423	0.434	0.168	0.271	0.529	nan	0.363	0.147	1.352	2.085	0.238	0.375	0.480	1.050	0.687	0.605	0.029	0.052	0.030	0.031	0.337	0.056	0.031	0.320	0.408	0.181
4202	chr2	7233231	7252689	+	0	NA	Intergenic	T-rich|Low_complexity|Low_complexity	-24949	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA	0.872	0.808	0.975	0.329	0.364	0.173	0.329	0.131	0.108	0.381	0.278	0.566	0.770	0.100	0.123	0.370	0.380	0.462	0.562	0.934	0.976	1.195	0.462	0.232	0.272	0.727	1.097	1.544	1.624	1.232	1.258	0.256	0.309	0.312	0.291	0.330	0.638	1.455	1.064	0.196	3.307	0.019	0.143	0.329	0.566	0.194	0.193	0.046	0.229
459	chr1	115297474	115301413	+	0	NA	intron (NM_001007553, intron 1 of 19)	intron (NM_001007553, intron 1 of 19)	1228	NM_001242892	7812	Hs.69855	NM_007158	ENSG00000009307	CSDE1	D1S155E|UNR	cold shock domain containing E1	protein-coding	8.167	3.238	5.126	3.816	5.262	2.726	3.433	2.766	0.164	1.670	0.892	4.562	10.264	4.336	0.173	7.025	5.930	8.272	11.797	9.244	nan	9.758	5.220	15.954	17.859	4.946	6.899	9.034	12.072	9.538	10.572	5.908	9.931	3.902	4.349	11.125	8.204	3.777	2.380	3.253	3.490	0.546	2.233	3.433	4.562	1.450	1.959	2.562	2.955
3477	chr17	56590352	56597869	+	0	NA	intron (NM_004687, intron 1 of 18)	intron (NM_004687, intron 1 of 18)	1141	NM_004687	9110	Hs.514373	NM_004687	ENSG00000108389	MTMR4	FYVE-DSP2|ZFYVE11	myotubularin related protein 4	protein-coding	4.943	3.719	3.224	5.186	5.731	3.238	3.506	2.105	0.407	2.462	1.445	3.766	11.528	2.838	0.080	6.206	6.732	4.421	6.859	8.371	5.837	7.447	3.096	nan	12.320	2.416	3.207	nan	14.727	6.351	8.237	2.575	5.207	5.315	4.852	3.682	4.723	2.926	1.366	1.188	4.700	0.544	3.270	3.506	3.766	1.634	2.173	2.273	1.394
1753	chr12	210972	217811	+	0	NA	intron (NM_015232, intron 2 of 12)	intron (NM_015232, intron 2 of 12)	27849	NM_015232	440073	Hs.536319	NM_015232	ENSG00000120645	IQSEC3	-	IQ motif and Sec7 domain 3	protein-coding	2.543	nan	nan	2.560	6.618	3.120	1.837	0.121	0.125	2.604	1.043	1.428	1.688	0.149	0.084	0.238	0.330	0.163	0.388	nan	2.609	13.716	6.271	0.312	0.250	0.576	0.778	8.838	7.901	1.206	0.767	0.816	0.677	5.234	5.123	0.426	nan	1.862	0.766	1.287	4.979	1.366	0.581	1.837	1.428	2.253	0.776	0.391	0.144
6138	chr5	2728474	2762778	+	0	NA	TTS (NM_001134222)	TTS (NM_001134222)	6143	NM_001134222	153572	Hs.282089	NM_033267	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding	0.355	0.765	0.727	0.095	1.092	0.636	0.811	0.119	0.146	0.097	0.144	9.003	1.648	0.389	0.119	0.267	0.162	0.219	nan	6.451	5.907	0.071	0.040	0.048	0.040	0.128	0.264	nan	0.133	nan	2.042	0.862	1.713	0.048	0.077	0.178	0.188	0.131	nan	1.088	1.006	0.016	1.581	0.811	9.003	0.232	0.018	0.508	0.022
7006	chr6	139558677	139566503	+	0	NA	3' UTR (NM_153235, exon 10 of 10)	3' UTR (NM_153235, exon 10 of 10)	50618	NM_153235	167838	Hs.535820	NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding	1.216	0.937	2.353	0.247	0.588	0.351	0.312	0.145	0.080	0.664	0.448	0.247	0.599	0.083	0.148	0.411	0.377	0.274	0.356	0.585	0.589	nan	0.373	0.278	0.219	5.037	6.322	1.145	0.949	0.622	0.470	0.117	0.186	3.540	2.807	0.182	nan	0.757	0.489	0.036	0.045	0.560	0.162	0.312	0.247	0.049	0.311	0.038	0.069
8302	chr9	133336512	133378178	+	0	NA	intron (NM_000050, intron 12 of 15)	intron (NM_000050, intron 12 of 15)	37251	NM_000050	445	Hs.160786	NM_000050	ENSG00000130707	ASS1	ASS|CTLN1	argininosuccinate synthase 1	protein-coding	nan	0.594	1.176	0.261	0.437	0.254	0.887	0.115	0.066	0.141	0.100	1.039	0.571	0.086	0.056	0.220	0.228	0.176	0.293	3.897	4.600	nan	0.125	0.166	0.200	1.891	2.256	0.583	1.088	2.998	2.505	0.206	0.194	0.553	0.536	1.251	2.553	0.504	0.430	1.019	0.220	0.242	0.881	0.887	1.039	1.783	0.087	0.047	1.281
2688	chr14	77647044	77657224	+	0	NA	intron (NM_020431, intron 1 of 23)	intron (NM_020431, intron 1 of 23)	4032	NM_020431	57156	Hs.22452	NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|hsCSC1	transmembrane protein 63C	protein-coding	3.090	3.409	1.811	0.621	1.050	0.693	1.098	0.141	0.158	0.523	0.425	1.083	2.534	0.439	0.081	0.798	1.129	0.378	0.607	1.460	1.715	1.726	0.390	0.352	0.414	1.358	1.895	2.004	nan	6.911	5.920	0.740	0.810	1.891	2.092	0.843	1.500	3.807	nan	4.965	1.080	0.619	0.443	1.098	1.083	0.700	1.557	0.292	0.293
4367	chr2	55841611	55847913	+	0	NA	promoter-TSS (NM_001282850)	promoter-TSS (NM_001282850)	98	NM_001122964	57223	Hs.516182	NM_020463	ENSG00000275052	PPP4R3B	FLFL2|PP4R3B|PSY2|SMEK2|smk1	protein phosphatase 4 regulatory subunit 3B	protein-coding	5.453	nan	4.820	4.828	4.399	2.014	2.948	3.136	0.181	3.779	1.330	5.394	9.566	4.285	0.170	5.838	6.092	8.679	11.489	9.200	8.706	8.576	5.331	21.885	22.941	4.589	5.467	6.543	13.891	9.555	10.176	4.219	7.088	3.279	3.747	9.178	7.378	2.303	1.408	2.788	5.008	0.392	2.081	2.948	5.394	1.402	2.879	1.801	1.943
7655	chr8	39958515	39983325	+	0	NA	Intergenic	LTR9|LTR|ERV1	-40067	NM_020130	56892	Hs.591849	NM_020130	ENSG00000176907	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding	0.656	1.200	nan	3.274	1.619	0.957	0.783	0.082	0.110	0.095	0.095	1.965	4.760	0.611	0.122	0.408	0.274	0.899	1.249	1.236	1.130	0.140	0.070	0.410	0.438	0.148	0.200	1.601	1.811	0.498	0.322	0.141	0.193	5.000	7.473	0.203	0.298	0.267	0.414	0.173	0.097	1.335	0.080	0.783	1.965	0.012	0.167	0.044	0.080
4244	chr2	20081674	20103901	+	0	NA	Intergenic	Intergenic	8960	NM_001008237	130502	Hs.591547	NM_001008237	ENSG00000183891	TTC32	-	tetratricopeptide repeat domain 32	protein-coding	2.248	1.111	1.684	1.392	0.958	0.637	1.077	1.428	0.131	0.849	0.515	1.266	2.924	0.976	0.133	1.766	1.695	2.088	2.767	2.947	2.931	2.786	1.361	4.746	5.284	1.374	1.774	2.557	nan	2.889	2.645	1.358	2.103	0.801	0.933	3.142	4.460	1.751	1.081	0.859	1.035	0.110	0.574	1.077	1.266	0.436	0.529	0.611	1.493
7641	chr8	33194079	33218837	+	0	NA	Intergenic	Intergenic	124206	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding	1.009	1.247	nan	0.259	0.300	0.151	1.811	0.114	0.124	0.100	0.161	0.247	0.768	0.056	0.153	0.336	0.157	0.175	0.281	1.311	1.355	4.931	2.580	0.185	0.166	0.445	0.676	0.303	0.249	1.745	1.884	0.106	0.152	1.757	1.885	0.330	0.948	2.042	1.308	0.052	0.047	0.481	0.212	1.811	0.247	0.142	0.049	0.040	0.392
3107	chr16	30339973	30368823	+	0	NA	Intergenic	Intergenic	-7703	NR_002453	595101	Hs.654650	NR_002453	ENSG00000183604	SMG1P5	-	SMG1P5, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 5	pseudo	1.685	0.955	1.249	1.771	1.170	0.650	0.971	0.640	0.117	0.505	0.247	0.885	3.951	0.834	0.095	1.107	1.092	1.218	1.837	1.341	1.277	5.689	1.750	2.419	2.452	1.100	1.708	2.428	3.410	1.768	1.668	0.796	1.156	2.008	2.396	1.067	1.417	1.240	0.646	1.031	0.531	0.448	0.468	0.971	0.885	0.321	0.891	0.302	0.343
3441	chr17	46615014	46698227	+	0	NA	promoter-TSS (NM_024015)	promoter-TSS (NM_024015)	689	NR_029608	406902		NR_029608	ENSG00000257178	MIR10A	MIRN10A|hsa-mir-10a|miRNA10A|mir-10a	microRNA 10a	ncRNA	1.365	8.785	nan	5.908	4.645	2.499	0.110	0.109	0.052	5.508	2.511	4.983	13.399	2.246	0.117	0.384	0.608	0.405	0.581	2.671	nan	2.250	0.816	1.283	1.380	1.477	2.234	3.092	nan	1.021	0.607	0.193	0.237	4.154	3.180	0.113	0.213	4.568	2.330	1.542	8.665	1.512	0.033	0.110	4.983	0.040	1.488	0.045	0.050
404	chr1	93543376	93547737	+	0	NA	intron (NM_001164393, intron 1 of 12)	intron (NM_001164393, intron 1 of 12)	764	NM_001164392	22823	Hs.31016	NM_007358	ENSG00000143033	MTF2	M96|PCL2|TDRD19A|dJ976O13.2	metal response element binding transcription factor 2	protein-coding	nan	nan	3.594	3.961	5.440	2.331	2.582	4.611	0.452	1.621	0.801	4.541	10.586	5.089	0.219	6.621	5.537	7.188	9.650	9.781	nan	7.857	3.716	14.645	15.543	6.936	nan	11.562	17.170	nan	9.117	4.476	7.374	2.912	2.826	9.513	8.896	3.713	1.661	3.814	3.346	0.388	2.781	2.582	4.541	0.891	1.510	2.154	2.395
3861	chr18	60036346	60045601	+	0	NA	intron (NM_003839, intron 9 of 9)	intron (NM_003839, intron 9 of 9)	48453	NM_001270949	8792	Hs.204044	NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER	TNF receptor superfamily member 11a	protein-coding	0.904	0.778	0.688	0.753	0.977	0.501	0.692	0.145	0.070	0.473	0.376	0.536	0.577	0.058	0.061	0.421	0.320	0.400	0.474	2.122	2.595	2.039	0.834	0.660	nan	1.385	nan	0.590	0.921	0.731	0.413	0.130	0.318	0.955	0.867	0.277	0.376	7.123	4.176	0.348	1.018	0.143	0.078	0.692	0.536	0.252	0.154	0.149	0.214
5649	chr3	169528530	169532624	+	0	NA	promoter-TSS (NM_001172779)	promoter-TSS (NM_001172779)	-3	NM_153353	151827	Hs.591289	NM_153353	ENSG00000171757	LRRC34	-	leucine rich repeat containing 34	protein-coding	5.152	4.414	2.426	6.462	5.031	2.187	2.246	1.002	0.197	3.299	1.403	6.096	3.562	0.426	0.042	1.513	2.483	0.301	0.184	7.760	7.052	17.538	4.811	0.573	0.673	0.787	0.982	nan	10.645	nan	9.578	1.327	2.491	11.027	7.749	3.938	3.148	4.927	3.001	6.903	2.728	1.816	0.816	2.246	6.096	0.875	2.702	0.504	3.400
4383	chr2	64066505	64083789	+	0	NA	intron (NM_006759, intron 1 of 9)	intron (NM_006759, intron 1 of 9)	6133	NM_006759	7360	Hs.516217	NM_006759	ENSG00000169764	UGP2	UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding	2.194	1.467	nan	1.742	1.625	0.984	1.283	2.879	0.242	0.842	0.499	1.220	4.527	2.380	0.171	1.308	1.579	2.221	3.582	3.030	2.555	nan	0.964	5.047	5.212	1.799	2.174	2.225	3.466	1.565	1.672	0.827	1.685	0.999	0.953	2.773	5.563	1.332	0.824	1.149	2.389	0.232	1.289	1.283	1.220	0.319	0.905	0.602	2.160
2163	chr12	118097102	118109091	+	0	NA	intron (NM_173598, intron 5 of 19)	intron (NM_173598, intron 5 of 19)	302932	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding	nan	nan	0.663	0.205	0.252	0.146	0.448	0.050	0.040	0.079	0.084	0.521	1.941	0.045	0.138	0.388	0.212	0.152	0.210	nan	nan	nan	0.102	0.264	0.331	0.106	0.230	nan	nan	0.479	0.211	0.203	0.245	0.134	0.227	0.229	0.241	nan	1.136	8.094	0.326	0.032	0.053	0.448	0.521	0.065	0.078	0.025	0.124
2214	chr12	132457094	132489053	+	0	NA	intron (NM_015409, intron 7 of 52)	intron (NM_015409, intron 7 of 52)	38608	NM_015409	57634	Hs.723478	NM_015409	ENSG00000183495	EP400	CAGH32|P400|TNRC12	E1A binding protein p400	protein-coding	0.826	0.723	0.697	0.455	0.361	0.176	0.882	0.102	0.128	0.235	0.206	0.172	0.438	0.106	0.133	0.371	0.433	0.436	0.519	1.052	0.987	2.028	0.503	0.434	0.400	0.452	0.690	nan	0.611	0.446	0.318	0.228	0.371	0.359	0.774	0.273	0.610	1.481	0.905	0.085	0.282	0.039	15.450	0.882	0.172	0.250	0.075	0.086	0.101
6566	chr5	176228245	176253907	+	0	NA	intron (NM_133369, intron 1 of 14)	intron (NM_133369, intron 1 of 14)	3516	NM_133369	90249	Hs.33191	NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 netrin receptor A	protein-coding	1.211	2.143	1.089	0.387	0.480	0.256	1.078	0.050	0.081	0.610	0.648	2.066	9.697	0.226	0.075	0.611	1.070	0.142	nan	4.205	3.639	0.953	0.226	0.050	0.107	1.921	nan	2.778	2.882	1.948	2.270	0.470	0.717	1.113	1.012	0.743	1.198	1.123	0.613	2.200	1.867	0.259	0.223	1.078	2.066	0.121	0.305	0.173	0.179
6907	chr6	111860866	111937861	+	0	NA	TTS (NR_034110)	TTS (NR_034110)	-10800	NM_001164283	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding	nan	1.792	nan	1.541	2.118	1.054	1.805	1.661	0.250	0.773	0.479	3.036	6.302	0.188	0.121	1.043	1.181	1.062	2.516	3.862	nan	nan	1.243	0.524	0.548	0.729	nan	0.720	0.777	1.286	1.151	0.706	1.228	1.110	1.228	0.737	nan	1.636	0.835	3.125	3.782	0.351	0.439	1.805	3.036	0.573	0.912	0.910	0.392
6625	chr6	15384131	15415971	+	0	NA	intron (NM_004973, intron 2 of 17)	intron (NM_004973, intron 2 of 17)	150965	NM_001267040	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding	1.397	nan	1.226	0.750	0.519	0.279	0.589	0.551	0.161	0.247	0.195	1.449	0.227	0.073	0.078	0.631	0.770	0.956	1.556	0.987	0.974	1.024	0.451	0.389	0.383	0.820	1.287	1.080	1.403	1.548	1.174	0.487	0.779	0.464	0.576	1.468	3.800	0.858	0.694	0.158	0.653	0.078	0.879	0.589	1.449	0.373	0.187	0.251	0.903
6582	chr6	2960833	2972647	+	0	NA	intron (NM_001297700, intron 1 of 6)	MER1B|DNA|hAT-Charlie	-4336	NM_001271825	5269	Hs.519523	NM_004568	ENSG00000124570	SERPINB6	CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3	serpin family B member 6	protein-coding	1.838	1.281	1.384	0.814	0.586	0.313	0.815	0.883	0.488	0.352	0.205	1.169	0.293	1.592	0.127	4.083	5.379	1.806	1.963	1.017	0.821	0.418	0.106	2.917	2.994	0.191	0.355	2.154	2.541	1.083	0.880	1.041	1.461	0.082	0.111	0.894	1.538	0.319	0.404	0.321	0.704	0.008	0.296	0.815	1.169	0.147	0.078	0.469	0.163
1941	chr12	51812444	51832085	+	0	NA	intron (NM_001258403, intron 1 of 16)	intron (NM_001258403, intron 1 of 16)	3363	NM_001258403	9498	Hs.4749	NM_004858	ENSG00000050438	SLC4A8	NBC3|NDCBE	solute carrier family 4 member 8	protein-coding	nan	1.830	0.853	0.372	1.361	0.652	0.960	0.206	0.066	0.233	0.315	0.655	1.524	0.143	0.079	nan	1.181	0.244	0.356	2.528	nan	1.806	0.621	0.218	0.309	1.281	nan	0.911	nan	1.232	1.154	0.582	1.133	3.685	3.799	0.837	2.257	1.442	0.940	0.212	0.725	1.455	0.108	0.960	0.655	0.583	0.310	1.072	0.642
4008	chr19	29008571	29017865	+	0	NA	intron (NR_110759, intron 5 of 9)	MER41A|LTR|ERV1	-84377	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA	nan	1.333	0.645	0.169	0.503	0.224	0.069	0.097	0.106	0.084	0.133	0.049	8.812	0.012	0.112	0.253	0.068	0.217	0.412	0.194	0.277	0.128	0.046	0.068	0.089	0.206	0.248	0.120	0.147	0.316	0.069	0.226	0.259	0.302	0.076	0.058	0.162	4.921	2.226	0.258	0.115	0.021	0.008	0.069	0.049	0.053	0.119	0.150	0.026
2826	chr15	29130272	29140673	+	0	NA	Intergenic	Intergenic	-41651	NR_047567	728310	Hs.589351	NR_047567	ENSG00000261649	GOLGA6L7P	GOLGA6L7	golgin A6 family-like 7, pseudogene	pseudo	nan	0.900	nan	0.169	0.604	0.328	1.718	0.044	0.123	0.636	0.330	1.880	1.177	0.633	0.075	3.189	4.303	1.673	2.184	2.074	1.765	0.144	0.060	3.629	3.263	2.690	3.674	1.300	2.321	nan	8.025	1.632	3.074	1.138	0.797	1.831	1.329	1.354	1.017	0.834	0.581	0.083	0.452	1.718	1.880	0.782	0.692	0.522	0.597
6648	chr6	19971624	20040025	+	0	NA	Intergenic	Intergenic	168223	NM_001546	3400	Hs.519601	NM_001546	ENSG00000172201	ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, HLH protein	protein-coding	1.334	nan	1.037	0.293	2.906	1.520	0.375	0.111	0.099	0.618	0.314	3.514	1.059	0.054	0.090	0.387	0.277	0.296	0.564	2.556	2.850	6.385	2.077	0.213	0.239	0.455	0.634	0.376	0.405	0.608	0.439	0.182	0.232	0.916	0.949	0.750	1.791	2.055	1.038	0.574	0.130	0.157	0.719	0.375	3.514	0.287	0.101	0.033	0.457
4895	chr20	23950499	23966211	+	0	NA	Intergenic	AluSx1|SINE|Alu	9157	NM_178312	92086	Hs.355394	NM_080920	ENSG00000149435	GGTLC1	GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2	gamma-glutamyltransferase light chain 1	protein-coding	0.680	0.908	nan	0.106	0.261	0.092	0.188	0.083	0.144	0.060	0.067	0.071	0.600	0.040	0.081	6.569	8.258	0.301	0.191	0.368	0.369	0.226	0.089	0.259	0.328	0.253	0.457	0.240	0.324	2.150	2.624	3.571	2.948	0.088	0.137	0.508	0.872	0.400	0.409	0.066	0.169	0.048	0.211	0.188	0.071	1.188	0.033	1.874	0.534
2132	chr12	108953375	108964661	+	0	NA	intron (NM_213595, intron 2 of 4)	intron (NM_213595, intron 2 of 4)	3779	NM_001320042	23479	Hs.615131	NM_014301	ENSG00000136003	ISCU	2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU	iron-sulfur cluster assembly enzyme	protein-coding	3.200	2.336	nan	2.840	2.906	1.551	1.973	2.288	0.170	1.735	0.906	2.417	5.978	2.975	0.144	3.868	3.085	3.727	6.091	5.168	5.334	5.398	3.410	7.823	8.294	2.870	3.810	6.815	8.147	5.099	4.445	3.168	4.175	4.136	6.534	3.992	3.283	4.037	2.113	2.808	4.096	0.628	1.151	1.973	2.417	1.091	2.383	0.982	0.961
7243	chr7	31714011	31733209	+	0	NA	Intergenic	Intergenic	-3021	NM_006658	10842	Hs.227011	NM_006658	ENSG00000106341	PPP1R17	C7orf16|GSBS	protein phosphatase 1 regulatory subunit 17	protein-coding	5.269	0.958	1.210	0.114	0.278	0.143	0.362	0.189	0.049	0.114	0.090	0.306	0.327	0.028	0.135	1.481	1.464	0.228	0.236	1.273	nan	0.132	0.114	0.621	0.653	6.569	nan	nan	nan	11.728	15.829	0.192	0.231	1.802	1.615	0.795	nan	1.072	0.781	0.020	0.042	0.604	0.099	0.362	0.306	1.796	0.037	0.041	1.318
8078	chr9	18605577	18613716	+	0	NA	intron (NM_001040272, intron 4 of 28)	intron (NM_001040272, intron 4 of 28)	36342	NR_036107	100422869		NR_036107	ENSG00000264638	MIR3152	-	microRNA 3152	ncRNA	nan	4.877	2.595	1.337	2.120	1.300	0.739	0.688	0.159	0.997	0.329	1.068	0.850	0.074	0.048	0.231	0.114	0.296	0.697	1.555	1.365	4.422	1.438	0.061	0.075	0.424	0.610	0.548	0.728	0.309	0.186	0.162	0.221	6.560	8.183	0.212	0.396	2.569	1.582	0.055	0.155	1.614	0.938	0.739	1.068	0.071	0.838	0.012	0.211
6994	chr6	137236672	137249885	+	0	NA	promoter-TSS (NM_001008783)	promoter-TSS (NM_001008783)	-101	NM_001008783	340146	Hs.369703	NM_001008783	ENSG00000182747	SLC35D3	FRCL1	solute carrier family 35 member D3	protein-coding	1.429	1.405	0.981	6.210	0.936	0.535	0.486	0.125	0.038	2.465	1.172	0.527	1.503	0.199	0.108	0.377	0.338	0.364	0.654	0.555	0.488	14.488	7.469	0.539	0.592	0.670	0.972	0.626	0.928	0.643	0.688	0.251	0.381	3.360	2.688	0.234	nan	2.227	1.396	0.076	0.073	0.354	3.221	0.486	0.527	0.059	0.962	0.045	0.102
5180	chr22	18286839	18292925	+	0	NA	intron (NM_015241, intron 29 of 31)	intron (NM_015241, intron 29 of 31)	29826	NR_103718	200298	Hs.517397	NR_103718	ENSG00000269220	LINC00528	C22orf37	long intergenic non-protein coding RNA 528	ncRNA	0.698	nan	0.491	1.031	0.351	0.079	0.259	0.111	0.054	0.413	0.447	5.735	0.266	0.106	0.118	0.671	1.177	0.327	0.440	3.929	3.430	0.243	0.059	0.650	0.600	0.247	0.486	3.073	2.575	0.283	0.242	0.313	0.601	0.340	0.238	0.164	0.360	7.093	3.028	0.085	2.058	0.015	0.053	0.259	5.735	0.127	0.435	0.115	0.138
6115	chr4	190649217	190656650	+	0	NA	Intergenic	Intergenic	53964	NR_135513	105379514	Hs.543309	NR_135513		LOC105379514	-	uncharacterized LOC105379514	ncRNA	1.240	1.715	nan	0.292	1.318	0.718	0.217	0.208	0.173	0.124	0.191	1.013	0.671	0.233	0.312	0.938	1.006	6.077	4.425	1.094	1.307	0.252	0.122	0.373	0.427	0.391	0.651	0.517	0.210	0.828	0.263	1.103	1.953	0.145	0.175	0.279	0.680	0.697	1.106	0.015	0.130	0.013	0.284	0.217	1.013	0.027	1.081	1.598	0.084
3751	chr18	39078199	39088139	+	0	NA	intron (NR_002838, intron 2 of 5)	intron (NR_002838, intron 2 of 5)	17392	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA	nan	0.832	0.758	0.133	11.414	6.251	0.438	0.075	0.066	0.298	0.204	0.197	0.226		0.053	0.461	0.185	0.286	0.346	0.385	0.522	6.453	0.974	0.093	0.134	0.466	0.693	nan	0.395	0.435	0.166	0.107	0.157	3.129	1.022	0.223	0.386	1.165	1.033	0.072	0.045	0.082	0.063	0.438	0.197	0.000	0.112	0.039	0.075
5674	chr3	173628561	173661947	+	0	NA	intron (NM_014932, intron 4 of 6)	intron (NM_014932, intron 4 of 6)	-6668	NR_046664	100874010	Hs.624265	NR_046664	ENSG00000228213	NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA	1.005	2.185	0.706	0.231	1.826	0.931	0.428	0.123	0.154	0.385	0.283	0.225	0.395	0.039	0.077	0.436	0.495	0.433	0.757	0.390	0.443	3.634	1.419	0.620	0.626	3.721	3.797	0.443	0.527	0.844	0.454	0.264	0.445	1.815	2.881	0.461	0.799	0.669	0.516	0.378	0.139	0.398	0.176	0.428	0.225	0.020	0.110	0.148	0.138
550	chr1	153638390	153652483	+	0	NA	Intergenic	AluJb|SINE|Alu	-1932	NM_004515	3608	Hs.75117	NM_004515	ENSG00000143621	ILF2	NF45|PRO3063	interleukin enhancer binding factor 2	protein-coding	nan	nan	2.400	1.746	1.638	0.844	1.831	0.880	0.320	1.333	0.995	1.566	6.223	1.315	0.228	1.997	2.032	4.395	4.034	4.056	nan	4.067	1.460	3.681	3.876	2.279	3.077	2.689	3.864	2.633	2.629	2.928	4.380	2.987	2.978	2.725	3.362	1.627	1.039	1.131	2.641	0.455	0.818	1.831	1.566	0.548	1.237	1.145	0.752
7331	chr7	75560131	75578678	+	0	NA	intron (NM_000941, intron 1 of 15)	AluSx|SINE|Alu	-3697	NR_002955	677801	Hs.689708	NR_002955	ENSG00000201643	SNORA14A	ACA14a	small nucleolar RNA, H/ACA box 14A	snoRNA	nan	0.955	1.173	0.890	0.422	0.165	0.538	0.302	0.218	0.554	0.474	0.696	1.049	0.240	0.161	0.576	0.748	0.348	nan	0.869	0.931	2.726	0.621	0.274	0.236	0.291	nan	2.273	nan	1.141	0.890	0.661	0.673	1.491	1.890	0.493	1.456	1.725	0.994	4.572	4.234	0.210	0.287	0.538	0.696	0.152	0.994	0.296	0.174
2083	chr12	94070145	94078102	+	0	NA	intron (NM_001320100, intron 2 of 2)	intron (NM_001320100, intron 2 of 2)	1578	NM_001330126	8738	Hs.38533	NM_003805	ENSG00000169372	CRADD	MRT34|RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	2.647	1.776	1.768	1.482	1.109	0.806	1.345	1.953	0.285	0.708	0.613	2.130	nan	1.486	0.121	2.567	2.900	2.486	3.387	4.859	4.528	5.108	2.600	4.863	5.391	8.667	9.812	2.833	nan	3.233	3.321	2.339	2.630	2.169	2.151	2.908	2.323	2.906	1.723	2.981	1.399	0.458	0.779	1.345	2.130	0.745	1.226	0.845	0.863
6677	chr6	26154054	26178872	+	0	NA	intron (NM_138720, intron 1 of 1)	intron (NM_138720, intron 1 of 1)	8114	NM_138720	3017	Hs.591797	NM_021063	ENSG00000158373	HIST1H2BD	H2B.1B|H2B/b|H2BFB|HIRIP2|dJ221C16.6	histone cluster 1 H2B family member d	protein-coding	3.731	2.288	nan	2.899	3.277	1.650	1.537	1.576	0.369	1.150	0.939	2.648	nan	3.458	0.147	4.944	6.770	3.181	nan	6.799	3.943	nan	3.413	7.079	7.182	3.358	4.162	4.375	5.478	3.908	6.180	1.683	3.314	4.343	2.399	4.285	4.687	1.588	1.068	1.191	2.756	0.546	1.427	1.537	2.648	0.571	1.115	1.005	1.297
1736	chr11	130028803	130061612	+	0	NA	intron (NM_021978, intron 1 of 18)	intron (NM_021978, intron 1 of 18)	15525	NM_021978	6768	Hs.504315	NM_021978	ENSG00000149418	ST14	ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14	suppression of tumorigenicity 14	protein-coding	0.638	nan	0.693	2.121	0.865	0.485	0.290	0.055	0.064	1.329	0.756	1.741	5.085	0.068	0.115	1.067	1.602	0.869	1.753	1.973	1.839	3.364	1.015	1.024	1.016	0.203	0.439	4.047	4.810	0.394	0.229	1.422	2.336	1.437	1.399	0.167	nan	2.760	1.478	1.609	1.615	0.209	0.097	0.290	1.741	0.095	0.915	0.961	0.052
958	chr1	243685274	243689764	+	0	NA	intron (NM_001206729, intron 12 of 13)	Tigger3a|DNA|TcMar-Tigger	178041	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA	nan	1.428	nan	0.897	2.343	1.317	0.670	0.791	0.110	1.179	1.113	1.238	0.643	0.181	0.061	0.640	0.466	0.619	0.628	1.372	1.694	1.245	0.257	0.527	0.456	2.868	2.996	3.047	3.128	0.818	0.488	0.103	0.249	7.517	11.783	0.565	1.376	1.389	0.726	0.013	0.039	2.015	1.787	0.670	1.238	0.214	0.249	0.022	0.247
592	chr1	156456717	156479219	+	0	NA	intron (NM_005920, intron 1 of 11)	intron (NM_005920, intron 1 of 11)	2666	NM_005920	4209	Hs.314327	NM_005920	ENSG00000116604	MEF2D	-	myocyte enhancer factor 2D	protein-coding	nan	nan	4.087	1.229	1.917	0.897	2.098	2.865	0.406	1.918	1.033	1.729	8.135	2.286	0.114	3.739	5.136	3.801	5.147	3.324	nan	2.925	1.471	1.781	1.744	2.729	3.455	6.198	6.169	3.877	3.420	3.342	5.666	1.795	1.650	3.460	9.556	1.818	1.129	0.651	2.905	0.488	0.981	2.098	1.729	0.978	4.631	3.954	2.792
3299	chr17	17138246	17142432	+	0	NA	5' UTR (NM_144997, exon 1 of 14)	5' UTR (NM_144997, exon 1 of 14)	163	NM_144997	201163	Hs.31652	NM_144606	ENSG00000154803	FLCN	BHD|FLCL	folliculin	protein-coding	4.586	2.975	3.412	3.938	7.383	4.248	4.274	3.516	0.725	1.681	0.845	4.692	8.147	3.624	0.154	9.106	10.478	7.947	nan	8.804	11.274	10.119	7.725	10.346	10.426	4.673	4.964	9.109	14.504	nan	8.276	5.646	8.432	4.781	5.809	8.278	6.442	2.835	1.873	2.439	3.933	0.495	1.195	4.274	4.692	1.865	8.027	1.060	2.434
4420	chr2	86176666	86186864	+	0	NA	Intergenic	Intergenic	65362	NR_110569	101928113	Hs.625888	NR_110569		ST3GAL5-AS1	-	ST3GAL5 antisense RNA 1 (head to head)	ncRNA	nan	0.826	nan	1.618	0.492	0.297	0.200	0.123	0.078	0.108	0.107	0.258	5.969	0.057	0.102	0.410	0.195	0.285	0.327	0.747	0.790	0.298	0.202	0.235	0.303	0.311	0.609	4.528	4.971	1.487	1.616	0.203	0.259	0.352	0.536	0.194	0.425	1.845	1.165	5.767	0.335	0.101	0.031	0.200	0.258	0.217	0.776	0.049	0.107
1978	chr12	58221153	58247586	+	0	NA	intron (NM_005730, intron 1 of 7)	intron (NM_005730, intron 1 of 7)	6378	NM_005730	10106	Hs.524530	NM_005730	ENSG00000175215	CTDSP2	OS4|PSR2|SCP2	CTD small phosphatase 2	protein-coding	nan	1.572	1.691	1.810	1.194	0.627	1.010	1.186	0.214	1.287	0.595	2.543	2.479	1.399	0.077	nan	2.623	1.417	2.005	2.827	nan	2.429	0.773	2.999	2.969	1.211	nan	3.276	nan	1.848	1.676	1.160	1.769	0.627	0.707	1.438	2.058	2.495	1.225	0.904	2.641	0.155	0.818	1.010	2.543	0.416	0.611	0.857	0.820
7362	chr7	82222031	82230570	+	0	NA	Intergenic	Intergenic	-153178	NM_001302890	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding	1.339	1.131	1.836	0.741	2.582	1.206	2.012	0.238	0.189	1.977	1.277	2.000	3.376	0.183	0.248	0.561	0.439	0.233	0.558	2.764	3.636	6.443	2.417	0.106	0.155	2.776	3.281	2.259	2.836	8.352	4.918	0.235	0.336	4.971	5.799	1.284	nan	2.526	1.402	1.331	3.181	1.378	0.335	2.012	2.000	0.274	0.924	0.046	0.505
1640	chr11	111955652	111958978	+	0	NA	promoter-TSS (NM_001276504)	promoter-TSS (NM_001276504)	207	NM_012459	26521	Hs.279915	NM_012459	ENSG00000150779	TIMM8B	DDP2|TIM8B	translocase of inner mitochondrial membrane 8 homolog B	protein-coding	2.200	2.449	1.621	3.268	2.792	1.748	2.998	1.075	0.048	2.272	1.169	2.889	7.831	3.035	0.118	22.825	18.666	5.988	8.329	6.417	6.861	7.713	2.285	8.421	8.996	5.449	5.697	6.003	7.561	8.117	6.989	7.732	13.427	5.208	5.996	3.791	4.869	4.373	1.822	1.988	2.687	0.743	1.909	2.998	2.889	1.285	2.517	3.274	1.372
8262	chr9	125662105	125668769	+	0	NA	intron (NM_001100588, intron 1 of 20)	intron (NM_001100588, intron 1 of 20)	2125	NM_018835	54542	Hs.533499	NM_018835	ENSG00000056586	RC3H2	MNAB|RNF164	ring finger and CCCH-type domains 2	protein-coding	nan	nan	2.209	3.141	1.859	0.915	2.263	1.669	0.337	1.445	0.851	2.353	nan	1.283	0.100	3.674	3.112	4.312	6.533	4.926	5.059	3.339	1.546	7.524	8.438	2.019	nan	4.252	7.145	9.660	8.217	2.521	3.804	2.355	3.359	3.907	2.899	nan	1.144	1.496	1.028	0.410	1.912	2.263	2.353	0.680	1.493	1.061	0.760
7280	chr7	50534786	50548499	+	0	NA	intron (NM_001082971, intron 11 of 14)	intron (NM_001082971, intron 11 of 14)	-23538	NM_001287495	63979	Hs.137516	NM_022116	ENSG00000132436	FIGNL1	-	fidgetin like 1	protein-coding	nan	1.780	1.947	0.515	0.835	0.473	1.284	0.089	0.091	0.950	0.686	0.585	2.513	0.063	0.148	0.523	0.359	0.493	0.907	1.648	1.771	2.700	0.458	0.129	0.168	0.700	1.200	3.653	3.062	0.663	0.655	0.218	0.388	2.008	2.149	0.375	0.915	3.157	1.332	0.912	0.399	0.544	0.481	1.284	0.585	0.148	0.830	0.059	0.167
2026	chr12	75961617	76001808	+	0	NA	Intergenic	Intergenic	-76294	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding	nan	1.041	0.817	0.190	0.293	0.179	0.356	0.295	0.178	0.174	0.172	0.230	0.586	0.062	0.069	0.376	0.259	1.300	2.063	0.858	1.045	0.809	0.210	0.197	0.202	5.703	5.067	nan	0.802	2.297	1.935	0.144	0.216	0.780	1.063	0.564	1.086	nan	0.849	0.055	0.182	0.274	0.112	0.356	0.230	0.760	0.191	0.047	0.309
793	chr1	203456280	203469117	+	0	NA	promoter-TSS (NM_014359)	promoter-TSS (NM_014359)	-573	NM_014359	26254	Hs.632468	NM_014359	ENSG00000188770	OPTC	OPT	opticin	protein-coding	2.309	1.082	7.237	0.131	0.680	0.243	0.872	0.221	0.135	0.466	0.230	0.816	0.863	0.126	0.076	0.824	1.413	0.717	0.938	1.344	1.562	2.363	0.821	nan	nan	2.739	3.435	0.331	0.583	2.681	2.739	0.357	0.550	1.313	0.842	0.670	1.919	1.902	1.110	0.030	0.618	0.553	0.180	0.872	0.816	1.022	0.040	0.177	0.433
1205	chr10	105299974	105355270	+	0	NA	intron (NM_004210, intron 1 of 5)	MIRb|SINE|MIR	-50423	NR_120675	102724341	Hs.599425	NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA	nan	nan	0.949	0.570	0.862	0.364	0.130	0.099	0.079	0.264	0.189	1.564	0.828	0.194	0.063	0.794	1.037	0.494	0.443	1.415	1.631	2.167	0.647	0.450	0.483	0.233	nan	8.146	6.117	0.340	0.320	0.440	0.635	0.324	0.312	0.447	nan	1.406	0.720	0.414	1.766	0.073	0.564	0.130	1.564	0.110	1.456	0.245	0.235
3674	chr18	18837498	18847390	+	0	NA	intron (NM_001142966, intron 1 of 32)	intron (NM_001142966, intron 1 of 32)	20241	NM_001142966	80000	Hs.149020	NM_024935	ENSG00000141449	GREB1L	C18orf6|KIAA1772	growth regulation by estrogen in breast cancer 1 like	protein-coding	1.317	1.128	1.597	0.124	0.164	0.162	0.496	0.090	0.064	0.157	0.106	0.085	0.280	0.071	0.112	0.566	0.331	0.465	1.758	0.441	0.546	1.108	0.440	0.309	0.223	0.069	0.221	0.121	0.134	3.278	2.576	0.087	0.166	4.653	9.499	0.792	1.596	0.697	0.698	0.034	0.071	1.582	0.092	0.496	0.085	0.177	0.030	0.030	0.841
8047	chr9	12773670	12803408	+	0	NA	intron (NM_203403, intron 1 of 1)	L1ME4a|LINE|L1	13527	NM_203403	286343	Hs.445356	NM_203403	ENSG00000153714	LURAP1L	C9orf150|HYST0841|LRAP35b|bA3L8.2	leucine rich adaptor protein 1 like	protein-coding	nan	nan	3.085	0.891	0.506	0.222	0.457	1.291	0.151	0.481	0.303	0.358	1.995	0.134	0.087	0.266	0.285	0.593	1.549	0.493	0.522	2.236	0.793	1.629	1.675	6.750	7.588	2.332	2.869	7.797	7.036	0.256	0.414	4.414	6.652	0.372	0.958	1.538	1.236	0.174	0.267	1.255	0.470	0.457	0.358	0.362	0.587	0.187	0.191
6982	chr6	135151043	135163320	+	0	NA	Intergenic	Intergenic	114079	NM_170771	64577	Hs.486520	NM_022568	ENSG00000118514	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family member A1	protein-coding	1.292	0.889	1.330	0.129	0.261	0.105	0.398	0.171	0.092	0.075	0.163	0.131	0.374	0.336	0.137	0.476	0.496	0.206	0.508	0.388	0.389	nan	0.922	0.250	0.293	0.452	0.698	0.204	0.224	1.276	1.151	0.133	0.168	0.757	0.536	2.080	nan	0.739	0.452	0.050	0.042	0.050	0.104	0.398	0.131	0.102	0.063	0.073	2.730
3625	chr17	80622276	80638761	+	0	NA	intron (NM_006822, intron 1 of 5)	MSTC|LTR|ERVL-MaLR	-4335	NR_039751	100616196		NR_039751	ENSG00000266107	MIR4525	-	microRNA 4525	ncRNA	0.836	0.741	1.107	0.362	1.702	0.930	0.794	0.154	0.184	0.447	0.347	3.630	1.133	0.086	0.103	0.726	nan	0.437	0.713	nan	1.621	1.364	0.358	0.490	0.566	0.424	0.738	0.617	1.249	0.151	0.130	0.460	0.521	0.299	0.264	0.377	0.469	1.518	0.670	0.064	0.318	0.033	0.184	0.794	3.630	0.066	0.530	0.078	0.098
4728	chr2	221966013	221992083	+	0	NA	Intergenic	Intergenic	458030	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding	nan	0.833	1.175	0.217	0.277	0.198	0.255	0.068	0.074	0.070	0.115	0.170	nan	0.033	0.121	0.421	0.338	0.260	0.420	0.271	0.329	0.286	0.082	0.286	0.335	5.069	5.933	0.417	nan	0.587	0.347	0.127	0.295	0.688	0.600	0.424	nan	0.350	0.316	0.275	0.089	0.172	0.273	0.255	0.170	0.141	0.198	0.053	0.313
2091	chr12	96108954	96120029	+	0	NA	intron (NM_001329702, intron 3 of 9)	intron (NM_001329702, intron 3 of 9)	69482	NM_001329702	59277	Hs.201034	NM_021229	ENSG00000074527	NTN4	PRO3091	netrin 4	protein-coding	0.797	0.937	0.730	0.127	0.244	0.106	0.128	1.408	0.407	0.184	0.127	0.210	nan	0.039	0.125	0.230	0.165	3.507	11.424	0.479	0.540	0.175	0.105	0.233	0.262	0.457	nan	0.357	nan	0.311	0.128	0.171	0.190	0.072	0.139	0.384	0.720	0.875	0.755	0.035	0.087	0.009	0.007	0.128	0.210	0.018	0.138	0.054	0.044
3329	chr17	25645769	25681877	+	0	NA	Intergenic	Intergenic	42717	NM_134265	26118	Hs.446017	NM_015626	ENSG00000109046	WSB1	SWIP1|WSB-1	WD repeat and SOCS box containing 1	protein-coding	nan	nan	nan	0.749	1.918	0.932	0.797	0.743	0.214	0.343	0.188	1.282	1.404	1.111	0.165	0.755	1.144	1.381	2.310	0.741	0.794	3.436	1.961	1.999	2.014	0.808	1.233	3.879	4.838	1.921	2.005	0.772	0.926	0.491	0.720	0.933	nan	1.100	0.771	0.534	0.797	0.100	0.425	0.797	1.282	0.413	0.659	0.227	0.741
4161	chr19	59068084	59076044	+	0	NA	intron (NR_027334, intron 1 of 5)	intron (NR_027334, intron 1 of 5)	1511	NR_027334	100131691	Hs.743767	NR_027334	ENSG00000267858	MZF1-AS1	-	MZF1 antisense RNA 1	ncRNA	4.232	3.219	4.134	4.829	7.423	4.068	4.017	1.729	0.144	1.964	1.027	5.411	5.063	2.543	0.107	9.061	11.954	3.905	5.776	8.507	7.869	10.106	5.824	4.219	4.262	4.010	5.300	6.634	10.053	6.343	6.221	3.481	5.755	5.175	4.260	5.621	5.587	5.450	2.630	4.238	4.271	1.372	2.357	4.017	5.411	0.832	3.881	2.069	2.150
1971	chr12	57067510	57084925	+	0	NA	intron (NM_006601, intron 1 of 7)	AluJo|SINE|Alu	5564	NR_104219	10728	Hs.50425	NM_006601	ENSG00000110958	PTGES3	P23|TEBP|cPGES	prostaglandin E synthase 3	protein-coding	nan	2.285	1.863	2.571	3.686	1.808	2.349	0.882	0.229	1.739	0.958	2.133	3.890	1.261	0.129	nan	3.387	4.703	4.869	4.236	nan	4.422	2.200	7.717	8.260	2.243	nan	4.004	nan	3.524	3.678	2.051	4.337	3.588	4.077	4.891	5.374	2.439	1.423	1.252	2.639	0.905	1.709	2.349	2.133	0.686	1.385	1.136	2.396
6103	chr4	185358015	185398945	+	0	NA	intron (NM_002199, intron 1 of 8)	intron (NM_002199, intron 1 of 8)	17246	NM_002199	3660	Hs.654566	NM_002199	ENSG00000168310	IRF2	IRF-2	interferon regulatory factor 2	protein-coding	nan	1.358	nan	0.573	0.871	0.480	0.643	0.987	0.126	0.314	0.203	1.053	1.531	0.622	0.084	0.820	0.927	5.461	6.200	1.270	1.172	0.650	0.263	0.866	0.844	0.097	0.138	1.650	2.388	0.748	0.597	1.928	2.614	0.234	0.256	0.446	0.548	0.796	0.531	0.784	1.224	0.053	0.422	0.643	1.053	0.071	0.318	1.180	0.203
5939	chr4	76840977	76848815	+	0	NA	intron (NM_014435, intron 5 of 10)	AluSg|SINE|Alu	17270	NM_014435	27163	Hs.437365	NM_014435	ENSG00000138744	NAAA	ASAHL|PLT	N-acylethanolamine acid amidase	protein-coding	0.716	0.591	1.919	1.579	0.355	0.226	0.163	0.152	0.182	0.999	0.564	0.518	0.713	0.069	0.111	1.654	1.637	0.366	0.346	0.665	0.937	9.517	2.838	0.468	0.447	0.646	0.938	6.811	5.410	0.304	0.163	0.133	0.227	3.703	4.627	0.287	0.665	2.535	0.983	0.825	1.126	1.312	0.051	0.163	0.518	0.137	1.783	0.050	0.279
1226	chr10	120837788	120841473	+	0	NA	intron (NM_003750, intron 1 of 21)	CpG	704	NM_003750	8661	Hs.523299	NM_003750	ENSG00000107581	EIF3A	EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185	eukaryotic translation initiation factor 3 subunit A	protein-coding	nan	3.726	6.385	4.188	9.101	4.242	2.451	4.506	0.348	1.724	1.346	6.018	7.444	4.748	0.142	6.511	6.281	12.184	15.999	4.390	4.137	9.227	5.642	12.685	12.976	3.786	4.856	9.225	16.449	5.800	5.915	3.916	6.895	3.552	4.563	8.091	5.959	2.900	1.524	1.892	2.984	0.569	2.148	2.451	6.018	1.204	3.151	1.863	1.958
1949	chr12	53253197	53273859	+	0	NA	Intergenic	Intergenic	-20750	NM_173352	196374	Hs.665267	NM_173352	ENSG00000170423	KRT78	CK-78|K5B|K78|Kb40	keratin 78	protein-coding	nan	1.140	0.554	0.286	0.614	0.334	0.378	0.911	0.202	0.469	0.263	0.720	3.845	0.129	0.051	nan	2.823	3.571	7.294	1.327	nan	2.001	0.721	0.414	0.440	0.401	nan	2.618	nan	0.915	1.134	1.231	1.650	1.073	1.279	0.149	0.259	1.022	0.868	1.130	0.695	0.184	0.061	0.378	0.720	1.019	0.181	0.531	0.042
1256	chr10	130264930	130282946	+	0	NA	Intergenic	Intergenic	189724	NR_120619	101927381	Hs.523342	NR_120619	ENSG00000280953	LINC01163	TCONS_00017722	long intergenic non-protein coding RNA 1163	ncRNA	0.393	1.017	0.441	0.048	0.526	0.287	0.257	0.058	0.054	0.035	0.068	0.040	1.437	0.024	0.068	0.217	0.129	0.084	0.095	0.440	0.546	0.058	0.047	0.051	0.061	0.060	0.132	0.128	0.222	0.523	0.495	0.057	0.066	0.031	0.043	0.051	0.101	1.964	0.963	4.152	0.693	0.016	0.075	0.257	0.040	0.087	0.073	0.011	
8203	chr9	93694203	93734781	+	0	NA	Intergenic	L1M7|LINE|L1	122922	NR_033912	100129316	Hs.458154	NR_033912		LOC100129316	-	uncharacterized LOC100129316	ncRNA	0.594	nan	0.820	0.241	0.342	0.176	0.306	0.076	0.059	0.135	0.101	0.158	1.212	0.024	0.062	0.238	0.200	0.375	nan	0.516	0.558	1.342	0.715	0.139	0.124	0.097	0.167	1.195	1.586	0.555	0.379	0.117	0.166	0.454	0.392	0.167	0.220	0.721	0.625	3.195	0.568	0.035	0.163	0.306	0.158	0.126	0.553	0.037	0.049
5927	chr4	70104827	70116079	+	0	NA	Intergenic	L1P2|LINE|L1	-30004	NM_001073	10720	Hs.339811	NM_001073	ENSG00000213759	UGT2B11	-	UDP glucuronosyltransferase family 2 member B11	protein-coding	0.465	0.477	0.471	0.127	0.285	0.157	0.092	0.026	0.086	0.056	0.102	0.128	0.215	0.010	0.120	0.409	0.239	0.397	0.256	0.140	0.203	6.821	1.384	0.357	0.495	0.117	0.170	0.368	0.338	0.320	0.130	0.122	0.217	0.141	0.171	0.093	0.122	0.579	0.673	0.005	0.070	0.008	0.093	0.092	0.128	0.009	0.027	0.044	0.023
1853	chr12	16600477	16606315	+	0	NA	Intergenic	Intergenic	97045	NM_145764	4257	Hs.389700	NM_020300	ENSG00000008394	MGST1	GST12|MGST|MGST-I	microsomal glutathione S-transferase 1	protein-coding	1.031	1.785	0.895	1.137	0.399	0.236	0.437	0.039	0.112	1.365	0.847	0.185	3.108	0.094	0.134	0.304	0.322	9.937	9.547	nan	0.933	10.064	3.453	0.384	0.339	0.271	0.385	2.679	5.210	0.414	0.211	0.394	0.871	2.610	1.961	0.632	1.269	1.882	1.036	1.074	0.151	0.490	0.341	0.437	0.185			0.237	0.254
2300	chr13	50224730	50246181	+	0	NA	intron (NM_032565, intron 3 of 3)	intron (NM_032565, intron 3 of 3)	30168	NR_103803	84650	Hs.433278	NM_032565	ENSG00000123179	EBPL	EBRP	emopamil binding protein like	protein-coding	1.208	nan	nan	0.248	0.145	0.105	0.180	0.146	0.099	0.116	0.099	0.242	0.180	0.065	0.092	0.556	0.594	0.181	0.209	0.480	0.604	nan	0.316	0.295	0.300	0.302	0.476	0.615	0.478	0.851	0.619	0.280	0.429	0.144	0.136	1.599	nan	0.299	0.230	0.081	0.252	0.031	0.109	0.180	0.242	0.045	0.080	0.088	0.951
2480	chr14	21559851	21579300	+	0	NA	exon (NM_001146683, exon 3 of 8)	exon (NM_001146683, exon 3 of 8)	-2402	NM_001101672	51222	Hs.250493	NM_016423	ENSG00000165804	ZNF219	ZFP219	zinc finger protein 219	protein-coding	nan	1.830	3.098	2.292	2.290	1.367	2.751	1.620	0.197	0.485	0.319	2.679	4.844	2.489	0.138	2.034	2.113	2.947	4.030	3.962	3.800	3.017	1.692	3.568	3.852	3.416	4.409	2.986	nan	5.294	4.605	1.865	2.717	1.925	1.641	3.147	4.323	1.266	0.829	2.978	2.383	0.511	1.381	2.751	2.679	2.200	1.882	0.870	1.916
799	chr1	203763953	203766241	+	0	NA	intron (NM_001319238, intron 1 of 19)	CpG	432	NM_001319239	9877	Hs.532399	NM_014827	ENSG00000058673	ZC3H11A	ZC3HDC11A	zinc finger CCCH-type containing 11A	protein-coding	7.057	4.341	9.080	4.657	6.699	4.413	5.391	7.100	0.268	4.318	1.617	6.139	11.990	6.841	0.223	6.529	6.712	19.713	22.781	9.872	9.762	7.122	4.505	nan	30.035	6.226	6.911	9.618	15.406	7.300	5.955	2.599	4.511	7.323	8.113	8.005	8.290	3.089	1.738	3.387	5.444	1.167	2.966	5.391	6.139	1.460	3.948	1.074	2.494
925	chr1	233157574	233163137	+	0	NA	intron (NM_014801, intron 26 of 33)	intron (NM_014801, intron 26 of 33)	73767	NR_138027	84284	Hs.642715	NM_032324	ENSG00000135778	NTPCR	C1orf57|HCR-NTPase	nucleoside-triphosphatase, cancer-related	protein-coding	1.008	1.794	1.148	0.937	0.324	0.114	0.322	0.189	0.029	0.127	0.133	0.301	0.616	0.097	0.105	2.347	2.630	8.772	5.287	0.595	0.772	nan	0.162	0.670	0.518	0.345	0.485	nan	2.660	0.511	0.204	1.099	1.673	0.059	0.164	0.109	0.375	nan	0.532	0.171	0.047		0.086	0.322	0.301	0.088	0.073	0.887	0.200
5657	chr3	171021352	171125039	+	0	NA	intron (NR_027767, intron 2 of 2)	intron (NR_027767, intron 2 of 2)	105002	NM_001161564	23043	Hs.34024	NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding	1.326	1.307	0.921	0.155	0.421	0.216	0.355	0.884	0.185	0.164	0.189	0.072	0.252	0.052	0.078	0.350	0.247	0.279	0.437	0.355	0.461	0.309	0.154	0.273	0.257	3.992	5.006	0.383	0.373	4.322	3.813	0.214	0.336	0.075	0.086	0.349	0.637	0.800	0.697	0.105	0.152	0.018	0.973	0.355	0.072	0.215	0.043	0.094	0.258
7834	chr8	101911077	101930064	+	0	NA	Intergenic	MER52A|LTR|ERV1	42229	NM_001135702	7534	Hs.492407	NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding	1.809	nan	nan	1.635	0.863	0.448	0.698	1.438	0.206	0.485	0.215	1.209	7.640	0.200	0.090	0.428	0.483	0.773	1.817	3.075	2.235	nan	0.783	1.219	1.236	0.764	nan	7.454	nan	nan	0.795	0.318	0.619	0.848	0.987	0.750	nan	1.621	1.041	1.443	2.003	0.120	0.322	0.698	1.209	0.302	1.244	0.127	0.416
8155	chr9	73177465	73231941	+	0	NA	intron (NM_001007471, intron 21 of 24)	intron (NM_001007471, intron 21 of 24)	-175130	NM_001206	687	Hs.150557	NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	Kruppel like factor 9	protein-coding	nan	nan	nan	0.160	0.246	0.156	0.229	0.602	0.109	0.124	0.134	0.413	0.490	0.044	0.081	0.337	0.384	3.643	nan	0.482	nan	0.120	0.071	0.280	0.313	0.320	0.491	0.372	0.350	0.416	0.341	0.184	0.339	0.125	0.164	0.510	1.177	0.724	0.589	0.073	0.113	0.021	0.078	0.229	0.413	0.087	0.095	0.092	0.389
2368	chr13	90038210	90060771	+	0	NA	Intergenic	L1MA3|LINE|L1	103273	NR_131228	105370308	Hs.599406	NR_131228	ENSG00000226037	LINC01040	TCONS_00021682	long intergenic non-protein coding RNA 1040	ncRNA	0.621	9.721	0.666	0.117	0.252	0.078	0.292	0.225	0.093	0.097	0.148	0.074	1.170	0.042	0.079	0.496	0.307	0.268	0.416	0.484	0.536	0.254	0.147	0.153	0.100	0.086	0.129	0.952	0.830	0.362	0.143	0.137	0.295	0.206	0.487	0.324	0.450	0.171	0.097	0.111	0.947	0.025	0.018	0.292	0.074	0.009	0.077	0.052	0.033
3357	chr17	30842478	30848410	+	0	NA	intron (NM_015194, intron 21 of 21)	L2c|LINE|L2	31339	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding	3.862	2.267	1.188	2.855	10.251	5.507	7.227	0.163	0.133	0.977	0.754	4.606	7.223	0.937	0.104	1.773	1.475	1.103	1.841	nan	4.801	6.031	2.286	0.807	0.869	0.826	1.120	3.515	6.326	nan	2.941	0.466	0.814	2.378	1.779	2.768	4.544	4.382	2.144	3.258	0.180	0.709	0.401	7.227	4.606	0.976	0.610	0.633	0.816
1955	chr12	54068548	54073564	+	0	NA	promoter-TSS (NM_005176)	promoter-TSS (NM_005176)	-544	NM_001002031	517	Hs.524464	NM_005176	ENSG00000135390	ATP5G2	ATP5A	ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9)	protein-coding	nan	2.044	2.121	1.928	8.092	4.735	1.891	0.930	0.162	1.027	0.775	4.131	5.592	1.276	0.146	nan	3.405	3.524	4.892	6.702	nan	10.739	4.587	7.514	8.542	4.378	nan	5.497	nan	10.841	10.430	2.903	3.800	5.024	5.124	7.783	10.718	3.410	1.844	0.692	5.085	0.839	0.743	1.891	4.131	2.181	5.832	1.096	5.361
6633	chr6	17411754	17424100	+	0	NA	intron (NM_006366, intron 1 of 12)	intron (NM_006366, intron 1 of 12)	24191	NM_006366	10486	Hs.132902	NM_006366	ENSG00000112186	CAP2	-	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding	1.184	nan	0.974	0.173	0.349	0.220	1.491	1.752	0.303	0.150	0.234	0.513	0.456	0.156	0.065	0.365	0.485	0.371	0.523	0.655	0.815	0.684	0.176	0.401	0.357	3.592	4.437	0.144	0.166	3.037	2.851	0.230	0.340	0.144	0.185	0.222	0.355	0.622	0.544	0.033	0.148	0.039	1.084	1.491	0.513	1.015	0.115	0.081	0.091
5866	chr4	38816467	38824305	+	0	NA	Intergenic	Intergenic	-13974	NM_003263	7096	Hs.621817	NM_003263	ENSG00000174125	TLR1	CD281|TIL|TIL. LPRS5|rsc786	toll like receptor 1	protein-coding	0.535	0.516	0.573	0.101	0.119	0.108	0.306	0.294	0.081	0.161	0.161	0.091	0.396	0.112	0.096	0.332	0.194	1.923	12.883	0.173	0.206	0.116	0.108	0.077	0.162	0.100	0.229	0.329	0.241	0.465	0.205	0.111	0.256	0.027	0.052	0.174	0.176	0.559	0.652	0.014	0.064	0.024	0.091	0.306	0.091	0.050		0.051	0.046
7871	chr8	108190958	108230518	+	0	NA	Intergenic	L1MB4|LINE|L1	138005	NM_001314051	284	Hs.369675	NM_001146	ENSG00000154188	ANGPT1	AGP1|AGPT|ANG1	angiopoietin 1	protein-coding	1.243	nan	nan	0.572	0.320	0.154	0.353	0.254	0.146	0.150	0.144	0.175	1.144	0.034	0.086	0.369	0.274	0.233	0.285	0.795	1.111	nan	0.501	0.570	0.509	1.587	nan	0.760	nan	nan	0.226	0.145	0.281	3.236	4.376	0.245	nan	0.628	0.480	0.333	0.054	1.042	0.702	0.353	0.175	0.039	0.092	0.027	0.100
2784	chr14	104159208	104183352	+	0	NA	intron (NM_001100119, intron 6 of 9)	intron (NM_001100119, intron 6 of 9)	10543	NM_001100118	7517	Hs.592325	NM_005432	ENSG00000126215	XRCC3	CMM6	X-ray repair cross complementing 3	protein-coding	2.727	1.016	4.205	1.088	0.665	0.398	1.135	0.458	0.113	0.510	0.368	0.853	1.408	0.567	0.107	0.915	1.182	1.180	1.571	1.914	1.973	2.025	0.830	0.729	0.703	1.389	2.185	1.368	2.083	1.589	1.604	0.710	1.210	0.781	0.948	0.904	0.775	1.282	0.827	0.674	0.752	0.166	0.349	1.135	0.853	0.149	0.278	0.237	0.245
206	chr1	36547204	36563521	+	0	NA	intron (NM_017825, intron 1 of 5)	L2|LINE|L2	909	NM_017825	54936	Hs.18021	NM_017825	ENSG00000116863	ADPRHL2	ARH3	ADP-ribosylhydrolase like 2	protein-coding	2.194	nan	2.017	2.229	1.046	0.705	0.967	0.596	0.137	0.805	0.525	3.126	2.392	0.782	0.108	1.112	1.510	1.055	1.477	3.358	3.547	nan	0.956	1.717	1.770	1.305	2.024	3.342	5.899	nan	1.032	1.893	2.876	0.862	0.789	1.272	1.429	1.542	nan	0.785	1.107	0.211	0.647	0.967	3.126	0.492	0.531	0.617	0.371
3791	chr18	47085981	47090323	+	0	NA	promoter-TSS (NM_001308006)	promoter-TSS (NM_001308006)	-249	NM_006033	9388	Hs.465102	NM_006033	ENSG00000101670	LIPG	EDL|EL|PRO719	lipase G, endothelial type	protein-coding	nan	1.290	1.119	2.087	1.308	0.750	5.306	0.640	0.073	0.216	0.057	1.094	4.220	0.102	0.046	0.479	0.729	3.302	6.555	3.048	2.164	16.002	4.227	3.045	3.037	0.369	0.750	2.927	4.610	1.176	1.318	0.419	0.534	0.693	0.957	0.356	nan	1.176	1.093	0.865	0.857	0.117	1.043	5.306	1.094	0.871	0.186	0.030	0.059
5516	chr3	124868910	124884676	+	0	NA	intron (NM_024628, intron 5 of 13)	L2c|LINE|L2	-6397	NR_049815	100847039		NR_049815	ENSG00000264986	MIR5092	-	microRNA 5092	ncRNA	1.052	nan	0.828	0.079	0.350	0.143	0.171	0.321	0.204	0.123	0.223	0.053	0.502	0.061	0.084	0.819	0.813	5.406	5.675	0.394	0.388	1.060	0.334	0.681	0.650	1.295	nan	0.460	0.542	1.422	1.087	0.278	0.464	0.040	0.092	0.397	0.771	0.414	0.444	0.436	0.102		0.096	0.171	0.053	0.050	0.091	0.088	0.143
331	chr1	60224224	60236824	+	0	NA	Intergenic	Intergenic	-7943	NR_110627	101926944	Hs.720353	NR_110627		LOC101926944	-	uncharacterized LOC101926944	ncRNA	1.198	1.470	nan	2.106	1.075	0.782	0.345	0.215	0.090	1.524	0.771	4.042	3.529	0.067	0.115	0.655	0.656	0.452	0.764	4.706	4.787	9.726	2.655	0.441	0.490	nan	nan	3.997	nan	0.910	1.132	0.574	1.018	3.295	3.302	0.376	0.791	3.889	1.826	0.292	0.474	1.118	1.102	0.345	4.042	0.155	0.675	0.959	0.196
358	chr1	68138361	68168143	+	0	NA	intron (NM_001199741, intron 2 of 2)	intron (NM_001199741, intron 2 of 2)	2392	NM_001924	1647	Hs.80409	NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding	3.175	1.656	nan	0.778	0.905	0.528	1.172	1.490	0.248	0.717	0.399	0.696	2.204	0.307	0.111	0.651	0.901	3.550	4.828	1.517	1.232	2.747	1.304	0.800	0.739	nan	nan	2.352	nan	1.647	1.825	0.775	1.385	2.123	3.380	1.591	5.388	1.402	0.838	0.680	1.136	0.730	0.856	1.172	0.696	0.830	0.959	0.589	1.360
2746	chr14	94389045	94409999	+	0	NA	TTS (NM_016150)	TTS (NM_016150)	5791	NM_001207072	90050	Hs.525550	NM_138344	ENSG00000140067	FAM181A	C14orf152	family with sequence similarity 181 member A	protein-coding	1.410	2.858	nan	0.577	0.283	0.118	0.498	0.893	0.123	0.141	0.137	0.103	2.672	0.072	0.109	0.237	0.203	0.308	0.808	1.192	0.971	0.496	0.146	0.379	0.315	0.239	0.450	0.884	2.046	0.790	0.766	0.371	0.336	1.065	0.791	0.242	0.391	nan	0.563	5.075	0.206	0.099	0.125	0.498	0.103	0.438	0.107	0.072	0.065
3606	chr17	78690175	78768095	+	0	NA	intron (NM_001163034, intron 6 of 29)	FLAM_C|SINE|Alu	50297	NR_110852	101928855	Hs.670692	NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA	1.223	1.122	1.235	1.185	0.983	0.485	1.628	0.656	0.143	0.474	0.374	1.274	2.160	0.104	0.114	0.650	0.867	0.358	0.607	2.785	2.356	1.465	0.413	0.545	0.558	nan	1.869	3.775	3.725	0.874	0.622	0.699	1.066	1.232	1.476	0.483	0.878	nan	0.817	0.801	2.785	0.230	0.260	1.628	1.274	0.262	2.100	0.739	0.176
6984	chr6	135496932	135527180	+	0	NA	intron (NR_134965, intron 5 of 16)	AluJr|SINE|Alu	9603	NM_001130172	4602	Hs.606320	NM_005375	ENSG00000118513	MYB	Cmyb|c-myb|c-myb_CDS|efg	MYB proto-oncogene, transcription factor	protein-coding	1.490	1.122	2.161	0.783	0.829	0.465	0.595	0.113	0.101	0.311	0.227	1.171	2.059	0.570	0.157	2.162	2.351	2.315	2.291	2.152	1.752	nan	0.706	3.339	3.297	0.444	0.676	0.943	1.268	1.332	1.227	13.791	20.603	0.905	0.528	1.144	nan	0.621	0.513	0.556	0.613	0.089	0.532	0.595	1.171	0.202	0.301	10.820	0.316
6596	chr6	5995853	6010077	+	0	NA	intron (NM_001278710, intron 2 of 3)	CpG-21667	1312	NM_001278711	51299	Hs.103291	NM_016588	ENSG00000124785	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding	2.341	1.846	1.141	0.790	1.548	0.901	1.866	2.011	0.345	1.445	0.669	3.389	1.712	0.218	0.109	0.337	0.231	3.960	5.756	4.500	3.662	0.579	0.186	0.673	0.724	1.142	1.454	1.220	2.144	4.734	7.013	0.274	0.661	0.164	0.203	3.383	3.558	2.118	1.382	0.934	2.117	0.007	1.776	1.866	3.389	0.442	1.803	0.251	1.015
6965	chr6	131684397	131711437	+	0	NA	Intergenic	AluSq2|SINE|Alu	126618	NM_004842	9465	Hs.486483	NM_004842	ENSG00000118507	AKAP7	AKAP15|AKAP18	A-kinase anchoring protein 7	protein-coding	0.940	1.177	0.998	0.212	0.245	0.152	1.182	0.054	0.076	0.174	0.092	0.099	0.290	0.037	0.133	0.338	0.168	0.245	0.269	0.185	0.225	nan	2.591	0.201	0.258	0.082	0.165	0.096	0.115	0.886	0.508	0.070	0.159	1.620	2.035	0.341	nan	0.727	0.470	0.031	0.043	0.279	0.100	1.182	0.099	0.011	0.037	0.018	0.115
5645	chr3	168424372	168429565	+	0	NA	intron (NR_021485, intron 5 of 15)	intron (NR_021485, intron 5 of 15)	157326	NR_030294	693136		NR_030294	ENSG00000207717	MIR551B	MIRN551B|mir-551b	microRNA 551b	ncRNA	0.979	0.958	1.157	0.285	0.253	0.154	0.841	0.272	0.136	0.631	0.421	0.391	0.235	0.021	0.086	0.365	0.227	0.176	0.135	0.527	0.621	15.284	5.459	0.206	0.335	1.379	1.630	nan	0.843	nan	0.745	0.193	0.266	1.268	1.816	0.448	0.748	0.461	0.568	0.010	0.051	0.073	0.061	0.841	0.391		0.232	0.095	0.168
2228	chr13	20354206	20357988	+	0	NA	intron (NR_044998, intron 1 of 7)	intron (NR_044998, intron 1 of 7)	1062	NR_003272	55269	Hs.213198	NM_001042414	ENSG00000121390	PSPC1	PSP1	paraspeckle component 1	protein-coding	4.924	3.655	4.137	5.119	3.057	1.569	2.272	5.945	0.889	1.327	0.767	5.401	6.685	3.673	0.130	8.690	7.085	7.942	nan	15.778	14.696	5.036	2.586	7.633	7.635	4.508	5.934	4.307	8.305	9.217	8.784	5.937	11.578	2.439	2.937	14.717	11.709	4.278	2.321	1.821	3.613	0.604	4.336	2.272	5.401	0.329	2.339	4.195	4.617
2070	chr12	88959408	88975395	+	0	NA	intron (NM_003994, intron 1 of 8)	intron (NM_003994, intron 1 of 8)	6849	NM_003994	4254	Hs.1048	NM_000899	ENSG00000049130	KITLG	DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7	KIT ligand	protein-coding	1.059	1.972	0.883	2.196	1.836	0.834	0.835	1.533	0.151	1.139	0.876	1.148	6.759	0.270	0.114	0.385	0.266	0.948	1.434	1.894	1.615	4.031	1.426	2.696	2.460	1.379	1.882	1.745	1.787	0.636	0.389	0.606	1.430	4.023	3.995	0.259	0.590	2.345	1.257	0.877	0.712	0.837	0.184	0.835	1.148	0.024	1.150	0.347	0.100
7413	chr7	103433522	103439593	+	0	NA	intron (NM_173054, intron 3 of 63)	intron (NM_173054, intron 3 of 63)	193406	NM_005045	5649	Hs.655654	NM_005045	ENSG00000189056	RELN	ETL7|LIS2|PRO1598|RL	reelin	protein-coding	nan	0.669	1.474	0.079	0.248	0.158	0.213	0.100	0.131	0.411	0.283	0.236	0.315	0.054	0.148	2.615	1.158	12.586	6.468	0.313	0.509	0.656	0.419	10.993	11.174	0.633	0.823	0.337	0.297	0.437	0.169	0.734	1.267	0.295	0.392	0.359	nan	0.811	0.905	0.028	0.154	0.048	0.106	0.213	0.236		0.084	0.098	0.101
6843	chr6	71755865	71798332	+	0	NA	Intergenic	Intergenic	-110310	NM_080742	135152	Hs.713609	NM_080742	ENSG00000112309	B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding	nan	nan	0.665	0.173	0.220	0.136	0.360	0.347	0.137	0.073	0.122	0.099	0.436	0.059	0.134	0.459	0.290	0.199	0.238	0.188	0.244	0.122	0.090	0.250	0.240	4.030	4.581	0.197	0.199	0.628	0.421	0.144	0.268	0.191	0.165	0.407	1.016	0.421	0.402	0.032	0.081	0.054	0.185	0.360	0.099	0.210	0.062	0.071	0.193
4112	chr19	47728240	47736514	+	0	NA	intron (NM_001127240, intron 1 of 3)	intron (NM_001127240, intron 1 of 3)	2074	NM_014417	27113	Hs.467020	NM_014417	ENSG00000105327	BBC3	JFY-1|JFY1|PUMA	BCL2 binding component 3	protein-coding	3.837	2.915	5.239	2.362	2.148	1.027	2.448	3.658	0.427	1.063	0.542	1.940	4.044	7.029	0.206	1.467	2.135	2.692	4.968	2.541	2.046	9.077	6.145	7.029	7.127	1.987	3.079	5.484	7.602	2.138	1.763	1.473	1.366	3.424	4.205	2.356	3.890	3.449	1.978	2.359	2.874	0.738	0.581	2.448	1.940	0.400	2.543	0.679	0.865
4336	chr2	50663253	50678476	+	0	NA	intron (NM_001135659, intron 18 of 23)	intron (NM_001135659, intron 18 of 23)	-95970	NM_138735	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding	1.322	nan	1.474	0.408	1.164	0.520	1.883	0.093	0.106	1.809	0.831	1.420	0.920	0.053	0.111	0.403	0.263	0.282	0.788	0.967	1.000	5.509	3.014	0.392	0.389	2.550	3.023	0.847	0.971	0.667	0.444	0.122	0.201	2.661	1.982	0.524	0.741	1.094	0.686	0.138	0.692	0.461	0.698	1.883	1.420	0.045	0.533	0.020	0.295
7707	chr8	62361313	62371650	+	0	NA	intron (NM_173519, intron 3 of 5)	intron (NM_173519, intron 3 of 5)	165956	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding	1.321	0.687	0.636	0.111	0.183	0.079	0.148	0.050	0.109	0.076	0.064	0.081	0.307		0.055	0.493	0.514	0.152	0.241	0.466	0.520	0.279	0.091	0.063	0.038	1.122	nan	0.166	0.155	nan	0.374	0.123	0.288	0.199	0.269	0.346	0.640	0.597	0.796	0.006	0.081	0.084	0.077	0.148	0.081	1.909	0.049	0.066	0.111
1312	chr11	12327522	12356284	+	0	NA	intron (NM_032867, intron 4 of 8)	intron (NM_032867, intron 4 of 8)	33456	NM_032867	84953	Hs.128196	NM_032867	ENSG00000133808	MICALCL	Ebitein1	MICAL C-terminal like	protein-coding	1.433	nan	1.959	2.746	2.919	1.566	2.498	1.096	0.163	1.321	0.696	10.673	5.768	0.034	0.085	nan	2.173	3.404	2.944	6.891	7.453	4.092	1.308	10.887	11.768	2.230	nan	2.085	1.245	3.479	3.203	2.028	3.251	3.533	3.754	0.830	1.403	3.699	nan	6.734	2.170	1.200	2.421	2.498	10.673	0.313	0.897	2.476	0.605
7873	chr8	109949709	109977211	+	0	NA	Intergenic	Intergenic	-136193	NM_003301	7201	Hs.3022	NM_003301	ENSG00000174417	TRHR	TRH-R	thyrotropin releasing hormone receptor	protein-coding	0.911	nan	nan	0.392	0.275	0.146	0.121	0.111	0.138	0.040	0.077	0.125	0.963	0.027	0.095	0.323	0.217	0.199	0.537	0.435	0.597	nan	2.585	0.611	0.629	0.383	nan	1.248	nan	nan	0.161	0.103	0.246	0.377	0.518	0.243	nan	0.239	0.301	0.196	0.587	0.128	0.061	0.121	0.125	0.011	0.100	0.064	0.076
5293	chr22	44974075	44996716	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	20175	NR_028409	388910	Hs.332685	NM_001012986	ENSG00000187012	LINC00207	NCRNA00207	long intergenic non-protein coding RNA 207	ncRNA	1.758	nan	0.391	1.408	0.465	0.265	1.664	0.073	0.078	0.387	0.186	1.386	2.185	0.071	0.099	0.396	0.540	0.154	0.167	2.117	1.679	3.918	2.156	0.380	0.338	0.115	nan	1.300	2.957	nan	2.943	0.287	0.381	0.552	0.397	0.305	0.324	1.974	1.361	1.065	1.711	0.109	0.250	1.664	1.386	1.709	4.963	0.183	0.031
7253	chr7	36442307	36449784	+	0	NA	exon (NM_001284301, exon 4 of 23)	exon (NM_001284301, exon 4 of 23)	-16311	NM_001100425	23366	Hs.6224	NM_015314	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding	1.186	1.053	1.184	0.154	0.484	0.321	0.244	0.328	0.066	0.292	0.261	0.399	0.493	0.160	0.167	4.615	4.108	8.018	3.341	0.510	nan	0.523	0.171	3.549	3.300	1.206	nan	nan	nan	0.505	0.249	1.814	4.656	0.293	0.556	0.284	nan	0.974	0.671	0.148	0.174	0.064	0.200	0.244	0.399	0.025	0.163	2.759	0.100
4473	chr2	114029917	114050011	+	0	NA	Intergenic	Intergenic	-3466	NM_003466	7849	Hs.469728	NM_003466	ENSG00000125618	PAX8	-	paired box 8	protein-coding	0.791	nan	0.926	0.087	0.224	0.127	0.162	0.696	0.096	0.047	0.080	0.131	nan	0.038	0.043	0.299	0.243	4.908	10.127	0.462	nan	0.539	0.175	0.466	0.512	0.161	0.303	0.327	0.450	0.393	0.185	0.465	0.510	0.040	0.052	0.256	0.391	0.152	0.238	0.106	0.065	0.005	0.036	0.162	0.131	0.044	0.020	0.230	0.098
7100	chr6	168483393	168511634	+	0	NA	Intergenic	Intergenic	-15276	NR_110312	79981	Hs.266746	NM_024919	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding	0.905	nan	0.917	2.006	0.413	0.204	1.507	0.062	0.057	0.380	0.236	1.953	3.995	0.058	0.081	0.574	0.842	0.629	0.860	5.179	4.928	0.680	0.195	0.108	0.126	0.092	0.138	2.056	2.498	nan	0.303	0.553	0.756	0.409	0.279	0.085	0.114	1.029	0.715	1.462	1.446	0.044	1.267	1.507	1.953	0.185	0.244	0.282	0.017
2365	chr13	86566282	86578197	+	0	NA	Intergenic	L1PA3|LINE|L1	-198756	NM_032229	84189	Hs.525105	NM_032229	ENSG00000184564	SLITRK6	DFNMYP	SLIT and NTRK like family member 6	protein-coding	nan	nan	0.584	0.235	0.316	0.228	0.280	0.971	0.094	1.239	0.870	0.121	0.781	0.064	0.079	0.508	0.385	0.232	0.264	0.485	0.639	2.068	1.275	0.177	0.149	0.106	0.130	2.601	3.364	0.590	0.340	0.197	0.544	1.264	0.884	0.331	0.502	0.147	0.158	0.019	0.015	0.200	0.179	0.280	0.121		2.331	0.092	0.011
1263	chr10	134105731	134122898	+	0	NA	intron (NM_001318878, intron 1 of 11)	intron (NM_001318878, intron 1 of 11)	6412	NM_001318879	282974	Hs.469002	NM_173575	ENSG00000165752	STK32C	PKE|YANK3	serine/threonine kinase 32C	protein-coding	0.814	0.773	1.240	1.175	5.470	3.152	0.253	0.114	0.047	0.410	0.242	4.329	1.504	0.209	0.055	0.281	0.152	0.325	0.575	2.717	2.252	2.488	0.825	0.126	0.102	0.274	0.514	4.792	5.082	0.271	0.228	0.534	0.740	0.316	0.240	0.228	0.262	1.123	0.649	2.117	0.589	0.017	0.124	0.253	4.329	0.112	2.548	0.270	0.043
3811	chr18	49139989	49152947	+	0	NA	Intergenic	Intergenic	228056	NR_040074	100287225	Hs.448920	NR_040074	ENSG00000227115	LINC01630	-	long intergenic non-protein coding RNA 1630	ncRNA	nan	0.757	1.165	0.067	0.294	0.174	2.182	0.058		0.073	0.044	0.063	0.515	0.067	0.079	0.466	0.380	0.220	0.424	0.596	0.678	3.487	1.079	0.097	0.123	0.728	0.917	1.584	1.764	1.512	1.415	0.097	0.172	2.070	1.927	0.534	nan	4.042	2.444	0.021	0.041	0.425	0.174	2.182	0.063	1.013	0.282	0.031	0.488
7107	chr6	169844224	169855176	+	0	NA	Intergenic	Intergenic	-195491	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding	0.605	nan	1.069	0.323	0.303	0.262	0.416	0.282	0.046	0.299	0.204	0.617	0.939	0.050	0.111	0.438	0.296	0.158	0.267	0.926	0.879	9.051	2.698	0.308	0.259	0.085	0.113	0.600	0.682	nan	2.007	0.304	0.428	0.164	0.123	0.079	0.195	1.101	0.662	0.031	0.177	0.044	0.102	0.416	0.617	0.044	0.056	0.099	0.046
7462	chr7	122016498	122028658	+	0	NA	intron (NM_001167940, intron 24 of 29)	intron (NM_001167940, intron 24 of 29)	-78013	NM_001024613	389549	Hs.553970	NM_001024613	ENSG00000128610	FEZF1	FEZ|HH22|ZNF312B	FEZ family zinc finger 1	protein-coding	1.228	0.713	1.014	0.283	1.062	0.553	0.624	0.101	0.053	0.172	0.299	0.554	0.360	0.053	0.124	6.191	4.826	5.719	2.306	0.842	0.840	1.857	0.307	0.335	0.351	0.157	0.197	0.407	0.408	0.826	0.528	0.336	0.609	1.200	1.780	1.136	2.492	0.654	0.654	0.009	0.227	0.140	0.830	0.624	0.554	1.018	0.066	0.162	0.264
6149	chr5	4508362	4520519	+	0	NA	Intergenic	Intergenic	-259154	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA	0.472	1.158	0.854	0.153	1.838	0.864	0.710	0.210	0.172	0.116	0.169	0.429	2.864	0.026	0.104	0.750	0.624	6.147	nan	1.278	1.070	1.045	0.561	0.073	0.072	0.177	0.360	nan	0.668	nan	1.741	0.462	0.806	0.041	0.109	0.102	0.189	0.297	nan	0.023	0.360	0.007	0.083	0.710	0.429	0.072	0.176	0.294	0.041
572	chr1	155212243	155215696	+	0	NA	intron (NM_001005741, intron 1 of 11)	AluSx3|SINE|Alu	684	NM_001005741	2629	Hs.282997	NM_000157	ENSG00000177628	GBA	GBA1|GCB|GLUC	glucosylceramidase beta	protein-coding	6.955	5.307	5.617	5.503	5.787	2.838	5.104	5.055	2.047	1.228	0.709	6.198	22.802	4.707	0.394	6.601	6.583	5.274	7.526	10.963	9.212	10.134	4.495	3.313	3.710	7.885	9.213	7.657	12.622	7.523	7.374	5.075	6.468	7.087	7.734	9.103	12.578	3.353	1.738	6.441	10.105	1.630	4.773	5.104	6.198	2.251	6.303	2.667	4.054
3762	chr18	42001441	42007384	+	0	NA	intron (NR_110792, intron 2 of 4)	intron (NR_110792, intron 2 of 4)	107250	NR_110792	101927921	Hs.464986	NR_110792	ENSG00000267337	LINC01478	-	long intergenic non-protein coding RNA 1478	ncRNA	nan	1.004	0.714	0.759	2.700	1.185	0.437	0.098		0.816	0.311	0.262	1.867	0.037	0.063	0.253	0.262	0.203	0.386	1.416	1.918	0.247	0.211	0.049	0.058	0.135	0.220	1.625	2.185	0.339	0.149	0.094	0.043	1.732	0.514	0.106	nan	5.991	2.998	0.160	0.015	0.386	0.015	0.437	0.262		0.068	0.033	0.085
8108	chr9	33509104	33530322	+	0	NA	Intergenic	L1MEf|LINE|L1	-4698	NM_001244752	441459	Hs.493710	NM_001013728	ENSG00000230453	ANKRD18B	bA255A11.3|bA255A11.5	ankyrin repeat domain 18B	protein-coding	1.611	nan	1.731	1.637	0.618	0.250	0.821	0.307	0.068	2.197	1.194	1.940	1.982	0.794	0.129	2.400	3.134	2.939	1.819	1.550	1.462	9.845	4.387	1.860	1.892	1.793	2.099	1.381	1.928	2.627	2.898	1.668	2.396	4.820	4.672	2.354	2.748	5.284	2.731	0.438	0.621	0.901	0.579	0.821	1.940	0.184	1.287	0.649	1.229
5415	chr3	79167821	79177631	+	0	NA	intron (NM_002941, intron 3 of 30)	intron (NM_002941, intron 3 of 30)	-104117	NM_133631	6091	Hs.744218	NM_002941	ENSG00000169855	ROBO1	DUTT1|SAX3	roundabout guidance receptor 1	protein-coding	0.553	0.607	0.610	0.108	0.092	0.049	0.066	0.083	0.084	0.049	0.050	0.073	0.256	0.022	0.116	0.192	0.120	0.162	nan	0.427	0.510	0.146	0.043	0.120	0.095	4.917	5.697	0.235	0.228	0.388	0.130	0.048	0.119	0.144	0.087	0.185	nan	0.284	0.305	0.006	0.101	0.107	0.025	0.066	0.073	0.020		0.030	0.116
3984	chr19	15384619	15412662	+	0	NA	intron (NM_001330384, intron 1 of 11)	AluSx4|SINE|Alu	-7378	NM_058243	23476	Hs.187763	NM_014299	ENSG00000141867	BRD4	CAP|HUNK1|HUNKI|MCAP	bromodomain containing 4	protein-coding	2.376	1.729	2.747	1.279	3.106	1.658	0.468	0.857	0.159	0.576	0.212	0.867	1.755	0.456	0.095	1.602	1.932	0.874	1.693	0.980	0.912	2.226	0.825	1.410	1.566	0.513	0.978	2.340	1.919	2.745	2.323	2.262	2.154	0.782	1.841	1.676	5.707	1.569	1.067	1.198	0.545	0.101	0.845	0.468	0.867	0.249	1.057	0.386	0.739
4159	chr19	59024584	59034478	+	0	NA	intron (NM_001316980, intron 1 of 2)	intron (NM_001316980, intron 1 of 2)	1395	NM_001316978	84878	Hs.515662	NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding	2.794	1.942	2.855	2.686	5.564	2.618	3.303	0.618	0.104	1.127	0.628	3.557	4.127	2.901	0.132	5.921	7.018	3.080	4.278	4.889	4.899	7.803	3.154	3.082	3.119	2.634	4.189	4.285	6.472	4.545	5.165	2.229	3.635	4.180	3.785	2.781	3.210	3.094	1.591	3.034	2.534	0.779	1.012	3.303	3.557	1.121	2.029	1.521	0.664
5667	chr3	172629942	172644866	+	0	NA	intron (NM_031955, intron 8 of 10)	intron (NM_031955, intron 8 of 10)	168929	NM_001258315	1894	Hs.518299	NM_018098	ENSG00000114346	ECT2	ARHGEF31	epithelial cell transforming 2	protein-coding	1.009	1.628	0.807	0.283	2.484	1.201	1.674	0.224	0.064	0.775	0.534	0.830	0.292	0.044	0.094	0.365	0.322	0.401	0.833	0.671	0.722	10.671	5.539	0.213	0.294	0.447	0.752	0.528	0.484	0.606	0.282	0.138	0.314	2.846	3.596	0.266	0.341	1.806	1.020	0.223	0.060	0.949	0.189	1.674	0.830	0.054	0.041	0.080	0.073
7029	chr6	147764364	147772791	+	0	NA	Intergenic	Intergenic	-61251	NM_001030060	389432	Hs.567973	NM_001030060	ENSG00000203727	SAMD5	dJ875H10.1	sterile alpha motif domain containing 5	protein-coding	nan	0.698	nan	0.083	0.531	0.169	0.167	0.128	0.115	0.131	0.093	0.115	0.214	0.066	0.098	0.703	0.953	0.709	0.629	0.432	0.372	9.702	5.853	1.013	1.207	0.108	0.143	0.171	0.162	0.613	0.255	0.292	0.331	0.153	0.226	0.220	0.339	0.471	0.397	0.013	0.063	0.011	0.010	0.167	0.115	0.046		0.117	0.224
2549	chr14	35341033	35345906	+	0	NA	intron (NM_013448, intron 2 of 26)	CpG	1384	NM_182648	11177	Hs.509140	NM_013448	ENSG00000198604	BAZ1A	ACF1|WALp1|WCRF180|hACF1	bromodomain adjacent to zinc finger domain 1A	protein-coding	11.125	3.670	5.177	6.693	4.961	2.373	4.552	6.524	0.693	2.157	1.451	4.971	12.977	3.776	0.157	5.264	5.620	6.654	11.185	9.855	7.171	4.416	1.174	25.636	26.334	6.796	8.774	10.059	15.594	15.587	16.965	3.573	9.080	9.592	7.369	7.632	6.304	3.378	2.352	7.050	7.791	2.335	8.480	4.552	4.971	1.875	4.028	2.402	1.925
5947	chr4	79452779	79492411	+	0	NA	promoter-TSS (NM_005139)	promoter-TSS (NM_005139)	-147	NM_005139	306	Hs.480042	NM_005139	ENSG00000138772	ANXA3	ANX3	annexin A3	protein-coding	0.733	0.586	0.729	0.167	0.402	0.185	0.253	0.424	0.065	0.076	0.082	0.270	0.343	0.036	0.077	0.594	0.533	3.314	6.401	0.299	0.278	0.376	0.147	1.228	1.262	0.182	0.350	0.478	0.477	0.327	0.196	0.188	0.312	0.095	0.105	0.272	0.662	0.339	0.305	0.060	0.166	0.021	0.066	0.253	0.270	0.029	0.049	0.109	0.141
6564	chr5	175960228	175974933	+	0	NA	Intergenic	L2c|LINE|L2	-1932	NM_001171976	54825	Hs.4205	NM_017675	ENSG00000074276	CDHR2	PCDH24|PCLKC	cadherin related family member 2	protein-coding	3.305	1.761	3.841	1.714	1.316	0.760	1.134	0.917	0.195	1.514	0.666	2.374	5.799	3.564	0.165	2.919	3.116	3.334	nan	3.522	2.883	3.531	1.404	3.761	3.610	2.386	nan	4.135	6.407	4.228	5.061	1.940	2.849	4.689	4.443	3.177	3.876	1.712	0.982	1.063	2.615	0.917	1.148	1.134	2.374	0.814	2.532	1.244	1.117
7275	chr7	47662136	47687815	+	0	NA	Intergenic	Intergenic	13438	NR_108090	101929086	Hs.563487	NR_108090	ENSG00000236078	LINC01447	-	long intergenic non-protein coding RNA 1447	ncRNA	1.382	0.903	nan	0.236	0.176	0.055	0.263	1.106	0.401	0.349	0.227	1.097	0.769	3.215	0.218	0.476	0.353	0.326	1.198	1.159	1.218	1.507	0.407	0.161	0.153	0.139	0.287	1.116	1.242	0.342	0.182	0.145	0.219	0.438	0.311	0.140	0.205	0.835	0.720	0.043	0.062	0.100	0.040	0.263	1.097	0.362	0.198	0.091	0.092
1472	chr11	65543460	65561270	+	0	NA	Intergenic	Intergenic	2119	NR_031600	100302196		NR_031600	ENSG00000071894	MIR1234	MIRN1234|hsa-mir-1234	microRNA 1234	ncRNA	nan	1.423	1.160	1.123	0.584	0.315	0.575	0.240	0.100	0.294	0.207	1.234	1.974	0.688	0.110	1.321	1.751	1.592	2.415	1.503	1.389	1.370	0.426	0.996	1.101	0.552	0.952	2.558	2.559	0.780	0.577	2.277	4.173	0.550	0.554	0.354	0.568	0.977	0.784	1.823	0.481	0.085	0.103	0.575	1.234	0.663	1.306	2.525	0.091
3684	chr18	21435966	21471407	+	0	NA	intron (NM_001127718, intron 1 of 36)	intron (NM_001127718, intron 1 of 36)	702	NM_000227	3909	Hs.436367	NM_000227	ENSG00000053747	LAMA3	BM600|E170|LAMNA|LOCS	laminin subunit alpha 3	protein-coding	1.037	1.362	0.951	0.556	0.535	0.257	1.359	0.275	0.195	0.326	0.281	0.841	3.098	0.049	0.089	0.492	0.472	1.841	nan	0.941	1.137	6.742	2.135	0.181	0.183	1.425	1.773	1.570	1.001	0.461	0.260	0.247	0.413	2.565	2.595	0.303	0.549	3.509	1.957	0.141	0.124	0.684	0.074	1.359	0.841	0.096	1.303	0.277	0.153
8401	chrX	112050033	112057932	+	0	NA	intron (NM_133265, intron 4 of 11)	intron (NM_133265, intron 4 of 11)	12372	NM_001113490	154796	Hs.528051	NM_133265	ENSG00000126016	AMOT	-	angiomotin	protein-coding	0.633	0.595	0.508	0.067	0.311	0.102	0.058	0.067	0.082	0.080	0.101	0.015	0.212	0.032	0.119	0.414	0.550	7.004	7.574	0.216	0.335	0.242	0.092	0.174	0.172	0.403	0.599	0.204	0.230	0.458	0.222	0.082	0.119	0.082	0.070	0.234	0.698	0.037	0.117	0.042	0.034		0.081	0.058	0.015	0.061		0.012	0.200
2622	chr14	58892549	58896846	+	0	NA	promoter-TSS (NR_130751)	promoter-TSS (NR_130751)	303	NM_001329945	9786	Hs.232532	NM_014749	ENSG00000100578	KIAA0586	JBTS23|SRTD14|Talpid3	KIAA0586	protein-coding	8.665	2.695	4.753	6.810	4.269	1.862	4.509	3.935	0.231	1.890	1.397	4.377	9.168	4.750	0.269	5.679	5.333	5.947	8.289	7.190	6.502	5.768	3.134	21.463	22.248	6.173	6.654	7.628	11.709	15.017	14.564	4.264	7.402	8.573	9.264	6.184	6.803	nan	2.604	3.731	6.008	1.482	3.388	4.509	4.377	1.901	3.533	2.747	2.448
8092	chr9	22446065	22458610	+	0	NA	3' UTR (NM_022160, exon 2 of 2)	3' UTR (NM_022160, exon 2 of 2)	5497	NM_022160	63951	Hs.371976	NM_022160	ENSG00000176399	DMRTA1	DMO|DMRT4	DMRT like family A1	protein-coding	1.764	nan	nan	0.433	0.168	0.115	0.531	0.749	0.174	0.585	0.313	0.143	0.563	0.529	0.083	0.183	0.098	0.544	1.164	0.689	0.766	1.876	0.504	0.062	0.062	3.431	4.152	0.116	0.145	1.207	1.004	0.164	0.247	3.656	3.468	0.425	0.952	3.694	1.758	0.013	0.310	0.993	1.071	0.531	0.143	0.016	0.605	0.063	0.351
2799	chr14	105788941	105818818	+	0	NA	intron (NM_015197, intron 1 of 23)	intron (NM_015197, intron 1 of 23)	-21965	NM_001242787	2972	Hs.424484	NM_001519	ENSG00000185024	BRF1	BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF	BRF1, RNA polymerase III transcription initiation factor subunit	protein-coding	1.442	0.616	2.212	0.493	0.322	0.222	0.875	0.293	0.097	0.163	0.225	0.257	1.013	0.134	0.078	2.436	3.500	0.304	0.517	1.466	1.183	1.429	0.467	0.600	0.585	0.743	1.168	0.560	0.794	0.787	0.793	1.613	1.357	0.334	0.399	0.234	0.351	0.145	0.130	0.524	0.199	0.076	0.154	0.875	0.257	0.235	0.214	0.689	0.050
8101	chr9	31388123	31394540	+	0	NA	Intergenic	Intergenic	-9843	NR_135134	101929620	Hs.547175	NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA	0.777	nan	0.896	0.192	0.501	0.161	0.419	0.047	0.101	0.250	0.220	0.094	1.134	0.017	0.105	0.185	0.173	0.411	1.416	0.332	0.409	10.974	5.263	0.107	0.133	2.016	2.442	0.168	0.258	0.527	0.217	0.111	0.267	1.336	0.908	0.295	0.322	0.918	0.900	0.053	0.055	0.089	0.267	0.419	0.094		0.047		0.080
4466	chr2	111614658	111631482	+	0	NA	intron (NM_001142807, intron 10 of 17)	intron (NM_001142807, intron 10 of 17)	132920	NM_001142807	55289	Hs.253320	NM_018308	ENSG00000153093	ACOXL	-	acyl-CoA oxidase-like	protein-coding	0.882	nan	0.747	0.138	0.191	0.076	0.248	0.151	0.066	0.254	0.139	0.329	nan	0.019	0.064	1.847	2.149	11.074	3.309	0.894	nan	2.155	0.605	2.495	2.591	0.178	0.294	1.384	1.277	0.231	0.147	0.651	1.225	0.472	0.458	0.063	0.146	0.699	0.406	0.136	0.186	0.135	0.057	0.248	0.329	0.040	0.145	0.679	0.045
5601	chr3	149681149	149696471	+	0	NA	promoter-TSS (NM_053024)	promoter-TSS (NM_053024)	-69	NM_053024	5217	Hs.91747	NM_002628	ENSG00000070087	PFN2	D3S1319E|PFL	profilin 2	protein-coding	5.673	nan	nan	3.949	3.500	2.089	2.671	3.600	0.480	2.523	1.368	2.436	10.420	1.486	0.108	2.397	2.026	2.859	4.148	5.551	4.476	nan	4.383	9.404	9.622	3.447	nan	6.263	nan	nan	8.140	2.634	6.203	3.841	4.334	5.661	4.625	2.393	1.362	4.952	2.637	0.889	1.705	2.671	2.436	0.988	2.907	2.075	1.619
348	chr1	65719263	65734086	+	0	NA	Intergenic	Intergenic	-3703	NM_001256865	9829	Hs.647643	NM_014787	ENSG00000116675	DNAJC6	DJC6|PARK19	DnaJ heat shock protein family (Hsp40) member C6	protein-coding	2.243	1.317	nan	1.801	1.233	0.726	1.785	0.291	0.130	0.895	0.645	1.773	2.648	0.400	0.132	2.410	2.695	0.555	1.138	4.869	4.344	5.047	1.478	1.693	1.652	nan	nan	3.466	nan	2.959	3.639	2.015	2.967	1.123	0.918	2.284	2.944	2.456	1.668	0.824	1.562	0.211	1.509	1.785	1.773	0.521	1.346	1.729	1.281
6735	chr6	35686585	35701152	+	0	NA	TTS (NR_027117)	TTS (NR_027117)	2492	NM_001145775	2289	Hs.407190	NM_004117	ENSG00000096060	FKBP5	AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10	FK506 binding protein 5	protein-coding	nan	3.518	nan	1.006	1.925	0.979	6.483	0.951	0.188	0.389	0.350	2.769	2.751	2.474	0.167	2.994	3.563	1.363	nan	nan	2.624	2.799	0.846	5.803	6.084	1.389	2.221	4.667	6.357	0.750	0.555	1.328	1.925	0.692	0.488	1.013	1.954	0.612	0.563	2.722	1.091	0.191	1.022	6.483	2.769	1.147	1.092	1.185	0.297
6190	chr5	14869599	14873931	+	0	NA	5' UTR (NM_054027, exon 1 of 12)	5' UTR (NM_054027, exon 1 of 12)	122	NM_054027	56172	Hs.156727	NM_054027	ENSG00000154122	ANKH	ANK|CCAL2|CMDJ|CPPDD|HANK|MANK	ANKH inorganic pyrophosphate transport regulator	protein-coding	nan	4.130	6.756	5.729	2.175	1.072	2.704	0.314	0.086	4.753	2.446	1.577	nan	1.652	0.153	3.362	4.546	4.245	3.903	8.412	6.311	4.165	1.642	3.154	2.852	nan	7.576	5.312	9.075	10.102	13.519	2.154	4.479	4.984	3.223	4.354	nan	6.194	3.255	0.244	6.676	0.986	1.942	2.704	1.577	1.513	6.800	1.002	1.892
7353	chr7	81714281	81727128	+	0	NA	intron (NM_000722, intron 6 of 38)	intron (NM_000722, intron 6 of 38)	82211	NR_110077	101927356	Hs.571348	NR_110076	ENSG00000223770	LOC101927356	-	uncharacterized LOC101927356	ncRNA	1.194	0.782	0.857	0.104	1.704	0.786	0.189	0.189	0.101	0.241	0.198	0.183	0.290	0.081	0.162	0.744	0.643	0.177	0.287	0.383	0.453	0.681	0.354	0.134	0.132	0.840	0.971	0.343	0.362	1.140	0.820	0.216	0.493	0.304	0.361	2.318	7.514	0.514	0.453	0.130	0.139	0.097	0.105	0.189	0.183	0.022	0.024	0.232	1.310
4496	chr2	131500483	131516917	+	0	NA	Intergenic	Intergenic	-4377	NM_152698	205147	Hs.369289	NM_152698	ENSG00000178171	AMER3	FAM123C	APC membrane recruitment protein 3	protein-coding	nan	0.853	nan	0.059	1.418	0.661	0.210	0.041	0.059	0.115	0.137	1.407	6.143	0.039	0.079	1.128	1.568	0.149	0.171	2.136	1.858	4.938	0.974	0.165	0.121	0.811	1.166	1.509	nan	0.786	0.764	1.017	1.797	0.933	0.487	0.374	0.425	0.160	0.178	3.025	0.949	0.127	0.068	0.210	1.407	0.736	0.019	0.673	0.076
1090	chr10	30721923	30730528	+	0	NA	5' UTR (NM_005204, exon 2 of 9)	5' UTR (NM_005204, exon 2 of 9)	2661	NM_001320961	1326	Hs.432453	NM_005204	ENSG00000107968	MAP3K8	AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	1.261	1.427	1.854	0.254	1.096	0.428	0.474	5.877	0.470	0.310	0.154	0.305	3.845	2.331	0.084	0.242	0.131	6.062	7.099	1.228	0.938	0.281	0.159	0.540	0.662	0.210	0.331	1.543	2.833	0.295	0.433	0.092	0.168	0.049	0.070	0.425	0.762	0.362	0.326	0.362	0.267	0.011	0.267	0.474	0.305	0.134	0.095	0.023	0.202
627	chr1	163330420	163338597	+	0	NA	Intergenic	Intergenic	42785	NM_145697	83540	Hs.651950	NM_031423	ENSG00000143228	NUF2	CDCA1|CT106|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0.924	nan	0.935	0.410	0.492	0.279	0.158	0.092	0.138	0.365	0.394	0.385	0.568	0.067	0.118	1.619	1.602	7.091	2.402	0.852	nan	0.981	0.280	0.184	0.175	2.445	2.231	0.476	nan	0.297	0.121	0.675	0.873	0.648	0.476	0.405	0.675	1.444	0.873	0.041	0.274	0.122	0.068	0.158	0.385	0.012	0.174	0.156	0.045
993	chr10	3269938	3297983	+	0	NA	Intergenic	Intergenic	-68927	NR_144639	10531	Hs.528300	NM_014889	ENSG00000107959	PITRM1	MP1|PreP	pitrilysin metallopeptidase 1	protein-coding	0.373	0.881	0.570	0.258	0.439	0.171	0.593	1.159	0.215	0.173	0.106	0.370	0.443	0.493	0.109	0.675	0.492	1.411	2.897	0.379	0.425	3.451	0.990	0.214	0.183	0.126	0.198	0.407	0.500	0.131	0.059	0.148	0.189	0.108	0.185	0.093	0.137	1.123	0.666	0.012	0.143	0.031	0.020	0.593	0.370	0.045	0.087	0.053	0.053
1308	chr11	12130969	12152069	+	0	NA	intron (NM_001346293, intron 2 of 26)	intron (NM_001346293, intron 2 of 26)	9396	NR_144418	9645	Hs.501928	NM_014632	ENSG00000133816	MICAL2	MICAL-2|MICAL2PV1|MICAL2PV2	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	1.072	nan	1.964	0.919	0.726	0.375	0.434	0.581	0.161	0.323	0.198	1.149	3.179	0.097	0.072	nan	1.201	0.390	0.496	3.348	3.315	3.633	0.931	0.902	0.997	0.534	nan	2.199	1.977	2.051	2.383	0.906	0.857	1.586	1.786	0.432	1.475	1.177	nan	1.340	3.715	0.414	0.649	0.434	1.149	0.645	0.231	0.155	0.370
6204	chr5	21272595	21279849	+	0	NA	Intergenic	AluSg|SINE|Alu	-183367	NR_027026	728411	Hs.88181	NM_207331	ENSG00000183666	GUSBP1	-	glucuronidase, beta pseudogene 1	pseudo	0.677	1.603	1.314	0.326	0.294	0.132	0.339	0.221	0.114	1.025	0.468	0.149	0.487	0.030	0.159	0.372	0.244	0.218	0.374	0.383	0.459	4.955	3.584	0.139	0.142	nan	1.829	0.356	0.363	0.623	0.259	0.109	0.181	6.132	7.975	0.146	0.318	nan	0.683	0.015	0.036	2.417	0.021	0.339	0.149	0.080	0.042	0.014	0.017
6844	chr6	71814762	71825869	+	0	NA	Intergenic	Intergenic	-153527	NM_080742	135152	Hs.713609	NM_080742	ENSG00000112309	B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding	nan	nan	0.714	0.342	0.163	0.060	0.458	0.769	0.173	0.134	0.087	0.057	1.047	0.099	0.097	0.556	0.565	0.317	0.622	0.177	0.246	0.146	0.098	0.368	0.317	4.326	4.650	0.415	0.419	0.624	0.384	0.743	0.878	0.692	0.651	0.290	0.700	0.817	0.503	0.025	0.064	0.095	0.050	0.458	0.057	0.043	0.262	0.738	0.111
4458	chr2	106239648	106251886	+	0	NA	Intergenic	Intergenic	-18751	NR_038891	285000	Hs.737917	NR_038891		LOC285000	-	uncharacterized LOC285000	ncRNA	0.781	nan	0.720	0.108	0.294	0.186	0.114	0.091	0.190	0.051	0.135	0.138	0.325	0.027	0.071	2.648	2.230	9.868	1.642	0.688	0.727	0.481	0.225	2.091	2.097	0.274	0.476	0.367	0.371	0.309	0.149	1.199	2.093	0.040	0.091	0.197	0.382	0.210	0.330	0.122	0.044	0.008	0.170	0.114	0.138	0.079	0.118	0.847	0.079
5792	chr3	194157888	194175788	+	0	NA	intron (NM_024524, intron 13 of 31)	intron (NM_024524, intron 13 of 31)	22130	NM_024524	79572	Hs.529609	NM_024524	ENSG00000133657	ATP13A3	AFURS1	ATPase 13A3	protein-coding	nan	1.380	0.730	2.748	1.568	0.801	0.129	0.564	0.135	0.700	0.572	1.507	nan	0.030	0.071	0.310	0.376	0.367	0.583	1.656	1.726	2.636	1.436	0.737	0.766	0.844	1.046	5.146	6.082	1.119	0.720	0.288	0.361	0.524	0.812	0.391	0.985	1.388	0.645	0.121	0.879	0.112	0.257	0.129	1.507	0.108	0.017	0.061	0.250
1425	chr11	57935047	57942426	+	0	NA	intron (NM_001005212, intron 2 of 2)	intron (NM_001005212, intron 2 of 2)	-19170	NM_001005283	219957	Hs.553643	NM_001005283	ENSG00000186513	OR9Q2	OR9Q2P	olfactory receptor family 9 subfamily Q member 2	protein-coding	0.472	0.670	0.383	0.070	0.182	0.065	0.087	0.113	0.022	0.044	0.079	0.048	0.234	0.037	0.149	1.722	1.564	8.042	3.289	0.286	0.306	0.091	0.066	0.105	0.172	0.214	0.260	0.214	0.231	0.188	0.074	0.151	0.200	0.080	0.089	0.060	0.195	0.227	0.276	0.015	0.024	0.013	0.011	0.087	0.048		0.007	0.040	
4826	chr20	5807862	5818993	+	0	NA	intron (NM_001303478, intron 3 of 3)	L1PA12|LINE|L1	-78547	NM_001819	1114	Hs.516874	NM_001819	ENSG00000089199	CHGB	SCG1	chromogranin B	protein-coding	1.995	1.537	2.114	0.134	0.480	0.160	0.374	0.114	0.029	0.492	0.203	0.140	0.422	0.039	0.087	0.895	1.260	0.210	0.326	0.392	0.464	1.007	0.434	0.244	0.229	3.901	4.494	0.706	0.685	1.420	1.073	0.390	0.462	1.888	1.348	1.228	2.163	1.242	0.859	0.010	0.169	0.505	0.043	0.374	0.140	0.977	2.621	0.304	0.301
3083	chr16	20815905	20822790	+	0	NA	intron (NM_030941, intron 2 of 19)	MER1B|DNA|hAT-Charlie	-1552	NM_001142725	112479	Hs.248437	NM_080663	ENSG00000196678	ERI2	EXOD1|ZGRF5	ERI1 exoribonuclease family member 2	protein-coding	3.510	2.607	nan	4.807	2.913	1.671	2.065	1.075	0.188	1.550	0.740	4.347	6.461	1.731	0.094	3.464	3.071	1.955	2.552	5.199	4.256	nan	3.941	9.592	9.557	2.858	3.759	8.227	11.995	3.979	4.032	2.161	3.210	4.399	4.631	2.220	3.184	3.205	1.751	3.345	1.954	0.689	1.531	2.065	4.347	0.803	1.577	1.017	1.058
1842	chr12	12865244	12882693	+	0	NA	intron (NM_004064, intron 2 of 2)	intron (NM_004064, intron 2 of 2)	3764	NM_004064	1027	Hs.238990	NM_004064	ENSG00000111276	CDKN1B	CDKN4|KIP1|MEN1B|MEN4|P27KIP1	cyclin dependent kinase inhibitor 1B	protein-coding	7.826	4.512	7.060	12.751	8.470	4.312	5.850	2.228	0.267	3.504	1.712	7.771	22.924	5.989	0.174	2.291	2.613	6.769	10.673	nan	16.704	4.452	1.983	12.268	12.390	4.567	5.965	5.469	6.975	9.467	10.525	4.666	9.225	4.580	4.610	3.938	3.527	2.438	1.210	10.296	8.637	1.457	4.178	5.850	7.771	0.840	1.639	4.911	1.262
2143	chr12	110839766	110842629	+	0	NA	intron (NM_016238, intron 1 of 10)	CpG	338	NM_001137664	51434	Hs.719935	NM_016238	ENSG00000196510	ANAPC7	APC7	anaphase promoting complex subunit 7	protein-coding	7.119	nan	3.522	8.601	6.369	4.021	7.782	5.241	0.454	3.119	2.044	7.310	11.916	5.997	0.330	12.681	8.674	11.103	15.798	nan	nan	12.269	10.683	23.691	25.981	7.931	9.026	nan	19.036	15.036	12.272	12.109	13.369	9.310	12.810	10.016	8.142	7.415	4.871	6.615	7.870	1.656	3.655	7.782	7.310	3.089	3.203	4.495	3.413
3881	chr18	67418701	67429197	+	0	NA	intron (NM_152721, intron 6 of 7)	intron (NM_152721, intron 6 of 7)	191140	NM_001303618	10666	Hs.660130	NM_006566	ENSG00000150637	CD226	DNAM-1|DNAM1|PTA1|TLiSA1	CD226 molecule	protein-coding	0.805	0.799	0.909	0.311	0.403	0.246	0.929	0.284	0.015	0.590	0.450	0.237	0.493	0.031	0.099	0.507	0.312	1.482	1.506	0.428	0.573	9.556	2.301	0.890	nan	0.389	nan	1.113	1.181	0.265	0.117	0.189	0.377	2.849	2.924	0.334	0.602	1.022	0.967	0.077	0.103	0.655	0.096	0.929	0.237	0.010	0.067	0.095	0.094
5318	chr3	395054	402387	+	0	NA	intron (NM_006614, intron 11 of 27)	L2a|LINE|L2	28758	NR_110739	101927193	Hs.677744	NR_110739	ENSG00000234661	CHL1-AS1	-	CHL1 antisense RNA 1	ncRNA	0.393	0.848	0.505	0.071	0.149	0.087	0.110	0.060	0.066	0.214	0.023	0.081	11.220	0.015	0.069	0.284	0.146	0.516	0.581	0.298	0.566	0.410	0.236	0.295	0.218	0.100	0.157	0.318	0.264	0.401	0.205	0.194	0.262	0.029	0.055	0.170	0.230	0.392	0.326	1.211	1.630		0.064	0.110	0.081	0.014	0.069	0.061	0.033
4223	chr2	15486618	15581031	+	0	NA	intron (NM_015909, intron 28 of 51)	L1ME1|LINE|L1	167648	NR_052013	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	neuroblastoma amplified sequence	protein-coding	0.887	0.782	0.862	0.391	0.227	0.103	0.178	0.134	0.082	0.136	0.161	0.080	0.362	0.074	0.123	0.447	0.276	0.279	0.314	0.306	0.366	0.371	0.163	0.221	0.183	0.516	0.771	0.410	nan	0.583	0.320	29.620	32.865	0.067	0.073	0.481	nan	0.461	0.449	0.036	0.121	0.008	0.090	0.178	0.080	0.065	0.268	28.453	0.255
5147	chr21	43979991	44005190	+	0	NA	intron (NM_018964, intron 18 of 20)	HAL1|LINE|L1	42615	NR_131192	101928233	Hs.534827	NR_131192	ENSG00000225431	LINC01671	-	long intergenic non-protein coding RNA 1671	ncRNA	nan	1.028	1.170	1.406	0.293	0.191	0.572	0.099	0.064	0.588	0.244	0.755	0.927	0.043	0.053	0.511	0.828	0.364	0.547	0.798	0.781	nan	0.298	0.416	0.463	0.176	nan	1.342	1.607	0.582	0.520	0.376	0.557	0.684	0.992	0.307	0.444	3.146	1.617	0.739	1.003	0.121	0.092	0.572	0.755	0.340	0.141	0.161	0.093
5031	chr20	60775474	60803472	+	0	NA	TTS (NM_007232)	TTS (NM_007232)	5850	NM_007232	11255	Hs.251399	NM_007232	ENSG00000101180	HRH3	GPCR97|HH3R	histamine receptor H3	protein-coding	0.877	1.093	0.627	0.571	2.154	1.163	1.012	0.072	0.098	1.089	0.739	0.738	5.631	0.082	0.071	1.550	nan	0.107	0.179	1.135	1.098	2.212	0.716	0.476	0.594	0.395	0.645	2.242	1.959	0.497	0.376	0.606	0.761	0.248	0.268	0.477	0.599	2.378	1.234	0.627	2.016	0.051	0.110	1.012	0.738	0.236	1.353	0.197	0.092
752	chr1	193019417	193032848	+	0	NA	TTS (NR_135615)	TTS (NR_135615)	413	NR_135615	107397392		NR_135615	ENSG00000238754	SCARNA18B	-	small Cajal body-specific RNA 18B	ncRNA	3.532	nan	2.876	1.594	1.733	0.774	1.804	1.384	0.277	2.254	1.147	1.934	3.445	1.372	0.117	2.857	3.169	5.795	6.683	4.956	4.362	3.633	1.458	12.523	12.539	3.634	nan	2.853	4.727	3.720	4.504	0.754	1.649	2.635	2.510	5.452	5.591	1.982	1.105	1.157	2.171	0.340	0.880	1.804	1.934	0.367	1.234	0.346	1.417
2899	chr15	61306893	61313919	+	0	NA	intron (NM_134261, intron 1 of 10)	MamRep434|DNA|TcMar-Tigger	211096	NM_134261	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding	0.609	0.898	nan	0.049	0.327	0.250	0.251	0.084		0.155	0.083	0.082	0.369	0.046	0.071	1.181	1.534	7.422	1.926	0.325	0.288	nan	0.047	0.177	0.134	0.106	0.195	0.280	0.270	0.545	0.306	0.395	0.588	0.070	0.080	0.239	0.504	0.345	0.298	0.016	0.012		0.034	0.251	0.082	0.046	0.082	0.125	0.122
3045	chr16	7409519	7423826	+	0	NA	intron (NM_145892, intron 1 of 12)	intron (NM_145892, intron 1 of 12)	33921	NM_145893	54715	Hs.459842	NM_018723	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog 1	protein-coding	0.871	nan	0.762	0.049	1.149	0.727	0.143	0.051	0.067	0.733	0.414	0.209	0.278	0.015	0.077	0.357	0.352	0.044	0.042	0.172	0.225	nan	0.133	0.143	0.140	0.149	nan	0.098	0.117	0.239	0.072	0.173	0.214	0.565	0.318	1.748	6.910	1.163	0.803	0.090	0.229	0.133	0.254	0.143	0.209	0.013	0.014	0.041	2.353
379	chr1	81766164	82102069	+	0	NA	Intergenic	Intergenic	89271	NR_125943	101927434	Hs.130394	NR_125943	ENSG00000234953	LOC101927434	-	uncharacterized LOC101927434	ncRNA	0.929	nan	nan	0.111	0.275	0.148	0.162	0.143	0.115	0.110	0.123	0.105	0.339	7.751	0.233	0.354	0.267	0.328	0.369	0.335	0.386	0.599	0.256	0.206	0.217	0.554	0.790	0.517	0.515	0.458	0.243	0.146	0.231	0.030	0.043	0.322	0.629	0.612	0.520	0.032	0.060	0.011	0.081	0.162	0.105	0.008	0.177	0.055	0.104
7282	chr7	50644616	50669885	+	0	NA	TTS (NM_005311)	TTS (NM_005311)	-24096	NM_001082971	1644	Hs.359698	NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase	protein-coding	nan	1.445	1.696	0.198	0.561	0.287	1.029	0.095	0.147	0.347	0.336	0.644	1.519	0.060	0.136	0.473	0.261	0.939	2.641	0.768	0.945	4.917	1.334	0.093	0.112	0.639	0.950	1.639	1.542	1.135	1.078	0.129	0.278	0.908	0.866	1.043	2.456	2.375	1.305	0.404	0.764	0.218	0.565	1.029	0.644	0.240	0.384	0.043	0.639
3404	chr17	40071988	40077041	+	0	NA	intron (NM_001303275, intron 1 of 27)	CpG	758	NM_198830	47	Hs.387567	NM_001096	ENSG00000131473	ACLY	ACL|ATPCL|CLATP	ATP citrate lyase	protein-coding	5.132	2.509	nan	1.512	2.906	1.462	3.330	1.827	0.482	2.080	1.149	3.200	7.386	2.634	0.126	3.819	3.746	2.875	4.983	4.647	nan	5.027	1.993	7.162	6.997	3.364	4.393	4.646	nan	10.629	12.781	1.196	3.205	4.023	3.497	6.814	8.434	2.449	1.278	4.079	2.881	1.243	1.394	3.330	3.200	1.594	1.647	1.449	4.577
5132	chr21	41038036	41050928	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	15235	NM_033170	10317	Hs.733638	NM_006057	ENSG00000183778	B3GALT5	B3GalT-V|B3GalTx|B3T5|GLCT5|beta-1,3-GalTase 5|beta-3-Gx-T5|beta3Gal-T5	beta-1,3-galactosyltransferase 5	protein-coding	nan	0.913	6.206	2.049	3.475	1.495	1.214	0.058	0.025	1.629	0.608	5.383	8.654	0.067	0.066	0.504	0.978	0.405	0.692	2.088	2.319	nan	2.523	0.282	0.329	0.156	nan	5.986	8.208	0.424	0.233	0.906	0.980	5.022	4.186	0.116	0.168	4.070	2.388	1.260	0.201	1.010	2.600	1.214	5.383	0.187	0.885	1.105	0.039
1894	chr12	31025708	31034088	+	0	NA	Intergenic	Intergenic	-49940	NM_001080509	441631	Hs.505141	NM_001080509	ENSG00000110900	TSPAN11	VSSW1971	tetraspanin 11	protein-coding	2.175	4.297	1.761	2.356	0.740	0.306	0.314	0.134	0.096	0.413	0.256	1.271	3.720	0.042	0.104	0.273	0.289	0.184	0.384	3.940	2.947	6.149	1.632	0.523	0.666	0.188	0.242	3.904	4.316	0.508	0.398	0.264	0.385	13.703	13.340	0.174	0.353	2.049	1.364	6.635	2.565	3.223	0.141	0.314	1.271	0.104	0.793	0.036	0.059
6260	chr5	51515385	51537678	+	0	NA	Intergenic	Intergenic	-557243	NM_015946	53918	Hs.644352	NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota homolog (Drosophila)	protein-coding	nan	nan	0.676	0.110	9.659	5.184	1.637	0.068	0.058	0.119	0.170	1.019	0.306	0.049	0.138	0.189	0.084	0.581	0.229	7.587	8.548	nan	1.165	0.083	0.054	0.419	0.634	0.267	0.282	nan	0.234	0.083	0.102	0.890	0.687	0.364	0.789	3.417	1.640	12.560	0.410	0.179	0.057	1.637	1.019	0.017	0.014		0.189
535	chr1	150945145	150961617	+	0	NA	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	-1118	NM_003568	8416	Hs.3346	NM_003568	ENSG00000143412	ANXA9	ANX31	annexin A9	protein-coding	nan	nan	2.106	1.106	1.239	0.704	1.534	1.188	0.352	1.113	0.678	2.378	4.190	1.548	0.158	2.260	2.784	1.955	3.199	3.551	nan	3.347	1.196	3.211	3.114	1.392	1.978	4.012	4.633	1.228	1.368	2.500	3.972	1.353	1.260	2.192	1.996	1.800	0.907	1.677	3.827	0.273	1.258	1.534	2.378	0.419	2.538	1.341	0.698
3138	chr16	49887566	49894009	+	0	NA	intron (NM_001271620, intron 1 of 7)	CpG	1043	NM_001271620	23090	Hs.443715	NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding	5.283	3.210	6.683	0.980	0.993	0.447	8.093	0.105	0.101	0.073	0.077	0.388	0.859	1.331	0.058	0.305	0.500	0.123	0.281	2.955	2.430	2.400	0.707	0.298	0.196	2.697	4.175	3.208	5.941	6.260	9.668	0.334	0.642	1.859	0.954	1.947	2.986	0.538	0.383	0.078	0.139	0.771	2.248	8.093	0.388	3.188	0.002	0.186	0.287
683	chr1	178984749	179015231	+	0	NA	intron (NM_001324311, intron 1 of 7)	intron (NM_001324311, intron 1 of 7)	4731	NM_001324311	9917	Hs.5737	NM_014864	ENSG00000116199	FAM20B	gxk1	FAM20B, glycosaminoglycan xylosylkinase	protein-coding	nan	nan	nan	0.984	1.079	0.536	1.007	1.011	0.286	0.533	0.317	0.817	1.612	0.703	0.116	1.442	1.874	1.822	3.127	nan	1.589	1.632	0.740	2.406	2.445	1.081	1.554	1.782	2.241	1.343	1.489	2.233	3.734	1.228	1.067	1.792	nan	1.403	0.999	0.433	2.328	0.199	0.421	1.007	0.817	0.314	0.554	1.514	0.803
2260	chr13	31320557	31335825	+	0	NA	intron (NM_001204406, intron 4 of 5)	AluSp|SINE|Alu	18546	NM_001629	241	Hs.507658	NM_001629	ENSG00000132965	ALOX5AP	FLAP	arachidonate 5-lipoxygenase activating protein	protein-coding	1.180	0.881	1.008	0.191	0.218	0.069	0.467	0.136	0.096	0.058	0.086	0.071	0.232	0.043	0.098	0.825	1.091	0.187	0.253	0.836	0.748	0.123	0.058	0.174	0.169	0.241	0.490	0.354	0.410	6.683	6.998	0.467	0.537	0.101	0.113	1.214	4.335	0.544	0.478	0.507	0.980	0.025	0.062	0.467	0.071	0.128	0.053	0.244	2.032
1215	chr10	114533850	114557793	+	0	NA	intron (NM_001318205, intron 7 of 7)	L1MEf|LINE|L1	-37434	NR_120684	103344931	Hs.458447	NR_120684	ENSG00000260917	LOC103344931	-	uncharacterized LOC103344931	ncRNA	0.818	nan	0.933	0.247	3.953	2.091	0.398	0.156	0.094	0.182	0.090	1.381	0.429	0.032	0.092	0.446	0.447	0.737	1.345	0.832	0.737	1.196	0.324	0.147	0.131	0.412	0.473	1.702	1.586	0.485	0.467	0.159	0.215	0.160	0.158	0.571	1.190	0.546	0.443	0.137	0.255	0.032	0.348	0.398	1.381	0.032	0.322	0.050	0.433
3886	chr18	68467218	68479214	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-155123	NM_001278515	220158	Hs.448217	NM_178506		GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1 (non-protein coding)	protein-coding	0.596	0.758	0.538	0.307	0.287	0.160	0.528	0.055	0.066	0.078	0.213	0.309	0.324	0.036	0.082	0.356	0.215	0.175	0.300	0.410	0.602	6.385	1.691	0.389	nan	0.090	nan	0.774	0.746	0.273	0.103	0.112	0.173	1.262	2.183	0.113	0.217	1.530	1.333	0.051	0.068	0.152	0.054	0.528	0.309	0.008	0.185	0.025	0.041
6176	chr5	11897386	11910776	+	0	NA	promoter-TSS (NM_001332)	promoter-TSS (NM_001332)	74	NR_109988	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding	nan	nan	nan	0.249	0.194	0.084	0.412	0.134	0.155	0.424	0.478	0.071	nan	0.025	0.089	0.753	0.915	0.541	0.809	0.311	0.393	0.142	0.097	0.297	0.273	nan	8.083	0.281	0.479	1.728	1.770	0.565	1.101	0.254	0.150	0.059	nan	0.681	0.566	0.029	0.106	0.077	0.030	0.412	0.071	0.305	0.038	0.311	
5937	chr4	74530917	74546608	+	0	NA	Intergenic	AluSq2|SINE|Alu	-52414	NM_001270392	166824	Hs.529677	NM_177532	ENSG00000169435	RASSF6	-	Ras association domain family member 6	protein-coding	0.749	0.876	0.604	0.621	0.607	0.409	1.108	0.199	0.076	0.127	0.103	1.205	2.587	0.035	0.059	0.709	0.563	0.715	0.649	0.446	0.540	1.724	0.360	3.933	4.109	0.129	0.177	7.244	6.032	0.450	0.239	0.197	0.409	0.538	0.590	0.175	0.421	0.950	0.517	0.121	0.401	0.097	0.192	1.108	1.205	0.049	0.687	0.145	0.110
5033	chr20	60840625	60883587	+	0	NA	intron (NM_001278649, intron 11 of 12)	intron (NM_001278649, intron 11 of 12)	-15846	NM_175573	11047	Hs.90107	NM_007002	ENSG00000130706	ADRM1	ARM-1|ARM1|GP110	adhesion regulating molecule 1	protein-coding	1.171	1.330	1.377	0.488	0.684	0.358	0.497	0.446	0.165	0.336	0.205	0.537	8.536	0.436	0.111	1.448	nan	0.722	0.868	1.004	0.948	1.048	0.471	2.464	2.478	0.679	1.170	1.989	2.461	0.762	0.707	0.599	0.943	0.242	0.227	0.779	0.883	0.807	0.511	1.189	3.711	0.084	0.348	0.497	0.537	0.188	0.571	0.210	0.215
765	chr1	198824486	198837231	+	0	NA	intron (NR_040073, intron 2 of 2)	intron (NR_040073, intron 2 of 2)	-2576	NR_029626	406995		NR_029626	ENSG00000207759	MIR181A1	MIR213|MIRN181A1|MIRN213|hsa-mir-181a-1|mir-181a-1|mir-213	microRNA 181a-1	ncRNA	0.940	nan	1.057	0.143	0.354	0.211	0.153	0.293	0.164	0.650	0.589	0.028	0.291	0.100	0.119	0.687	0.273	1.231	1.137	0.534	0.552	0.260	0.192	0.417	0.400	3.732	3.539	0.570	0.516	0.371	0.197	0.081	0.163	0.765	0.671	0.510	1.196	0.387	0.311	0.026	0.047	0.142	0.019	0.153	0.028		0.056	0.004	0.280
312	chr1	54134753	54154441	+	0	NA	intron (NM_147193, intron 1 of 9)	intron (NM_147193, intron 1 of 9)	55280	NM_147193	148979	Hs.306691	NM_147193	ENSG00000174332	GLIS1	-	GLIS family zinc finger 1	protein-coding	1.215	0.542	0.879	0.148	0.409	0.173	0.294	0.260	0.090	0.079	0.111	0.117	0.379	0.110	0.109	0.352	0.461	0.315	0.619	0.787	0.847	0.716	0.276	0.329	0.422	3.841	4.488	0.423	0.596	1.852	2.758	0.272	0.327	0.126	0.137	0.531	nan	0.403	0.498	0.070	0.109	0.029	0.126	0.294	0.117	0.639	0.061	0.066	0.275
2521	chr14	30104356	30126047	+	0	NA	intron (NM_002742, intron 4 of 17)	L2a|LINE|L2	281698	NM_002742	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding	1.163	0.867	0.913	0.269	0.262	0.156	0.112	0.478	0.126	0.123	0.113	0.401	0.804	0.070	0.104	0.191	0.151	0.728	0.610	0.398	0.527	0.296	0.151	0.269	0.280	2.610	3.445	0.567	0.513	0.620	0.313	0.150	0.265	0.432	0.484	0.233	0.458	0.364	0.285	0.395	0.083	0.080	0.590	0.112	0.401	0.018	0.122	0.069	0.073
7804	chr8	96121654	96127942	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-21151	NM_024613	79666	Hs.29724	NM_024613	ENSG00000175895	PLEKHF2	EAPF|PHAFIN2|ZFYVE18	pleckstrin homology and FYVE domain containing 2	protein-coding	nan	2.412	5.751	0.683	3.462	1.963	0.530	0.688	0.101	0.932	0.396	0.326	2.566	0.018	0.071	0.317	0.243	1.094	nan	0.729	0.923	6.693	1.192	0.222	0.356	4.678	5.555	2.581	3.080	0.896	0.808	0.328	0.442	9.542	8.693	0.424	0.853	1.531	0.978	0.513	0.141	2.771	0.146	0.530	0.326	0.141	1.060	0.089	0.282
7167	chr7	13863204	13900185	+	0	NA	Intergenic	L2|LINE|L2	144445	NM_001163150	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding	nan	1.006	nan	0.188	0.856	0.367	0.691	1.587	0.158	2.959	1.305	0.643	0.947	0.071	0.147	nan	0.524	0.871	0.923	0.694	0.797	1.060	0.414	0.312	0.323	1.795	2.143	0.741	0.733	0.295	0.149	0.092	0.158	1.984	2.399	0.211	0.437	1.307	0.756	0.039	0.209	0.459	0.183	0.691	0.643	0.108	0.487	0.036	0.053
1002	chr10	4804191	4823249	+	0	NA	Intergenic	Intergenic	-54649	NM_001271021	83592	Hs.657944	NM_031436	ENSG00000165568	AKR1E2	AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR	aldo-keto reductase family 1 member E2	protein-coding	0.363	0.707	0.565	0.130	0.258	0.168	0.316	1.261	0.209	0.075	0.106	0.094	0.252	3.788	0.136	0.400	0.249	2.079	3.728	0.257	0.310	0.318	0.174	0.188	0.233	0.328	0.453	0.242	0.276	0.197	0.061	0.121	0.150	0.026	0.093	0.071	0.130	0.412	0.406	0.018	0.047	0.020	0.025	0.316	0.094	0.005	0.016	0.032	0.032
2435	chr13	109089662	109094790	+	0	NA	Intergenic	Intergenic	-156274	NM_015011	23026	Hs.656587	NM_015011	ENSG00000041515	MYO16	MYAP3|MYR8|Myo16b|NYAP3|PPP1R107	myosin XVI	protein-coding	1.702	nan	0.749	0.085	0.189			0.058	0.124		0.083	1.257	0.339	0.022	0.073	8.262	7.683	0.570	0.698	9.580	13.555	0.176	0.077	0.080	0.053	1.324	1.427	0.215	0.337	6.510	6.178	1.839	2.480	0.081	0.132	0.128	0.222	0.117	0.115	0.032	0.163		0.311		1.257	0.151	0.020	1.684	0.052
6187	chr5	14569386	14590359	+	0	NA	Intergenic	L2c|LINE|L2	-2019	NM_019018	54491	Hs.155085	NM_019018	ENSG00000145569	FAM105A	NET20	family with sequence similarity 105 member A	protein-coding	nan	nan	nan	1.761	0.974	0.375	0.506	0.382	0.247	1.109	0.608	1.842	nan	0.274	0.131	0.619	0.731	0.575	0.784	1.844	1.926	1.701	0.502	0.223	0.261	nan	1.223	1.290	1.737	1.564	1.244	0.219	0.376	1.266	1.399	0.623	nan	2.199	1.274	0.175	0.456	0.386	0.344	0.506	1.842	0.213	1.132	0.075	0.278
4837	chr20	6900255	6903885	+	0	NA	Intergenic	Intergenic	153325	NM_001200	650	Hs.73853	NM_001200	ENSG00000125845	BMP2	BDA2|BMP2A	bone morphogenetic protein 2	protein-coding	0.730	1.753	0.611	0.241	0.262	0.266	0.140	0.082	0.001	0.087	0.158	0.167	0.513	0.030	0.068	1.057	1.089	12.202	6.659	0.452	0.302	3.066	0.963	0.292	0.220	0.193	0.244	0.680	0.654	0.654	0.567	0.611	0.586	3.169	2.912	0.101	0.239	0.594	0.683	0.336	0.440	0.423	0.260	0.140	0.167	0.026	0.196	0.135	0.068
370	chr1	72741796	72752619	+	0	NA	intron (NM_173808, intron 1 of 6)	intron (NM_173808, intron 1 of 6)	1070	NM_173808	257194	Hs.146542	NM_173808	ENSG00000172260	NEGR1	DMML2433|IGLON4|KILON|Ntra	neuronal growth regulator 1	protein-coding	nan	1.054	1.328	1.596	1.928	1.068	1.612	0.584	0.179	1.565	1.118	3.418	6.590	0.521	0.110	1.677	2.652	0.869	1.527	8.424	nan	7.808	2.660	3.570	3.600	5.816	nan	3.057	4.956	2.277	3.310	0.284	1.021	1.383	0.621	1.778	2.679	2.356	1.423	4.197	1.734	0.423	1.036	1.612	3.418	0.081	0.702	0.539	0.809
7508	chr7	139437587	139455760	+	0	NA	intron (NM_001113239, intron 1 of 14)	intron (NM_001113239, intron 1 of 14)	31020	NM_022740	28996	Hs.731417	NM_022740	ENSG00000064393	HIPK2	PRO0593	homeodomain interacting protein kinase 2	protein-coding	nan	nan	nan	0.598	0.490	0.211	0.147	0.262	0.099	1.146	0.486	0.646	0.586	0.060	0.125	0.757	1.181	0.426	0.624	1.334	1.460	nan	0.575	0.554	0.617	1.054	nan	1.174	1.278	nan	0.704	0.582	0.781	0.542	0.754	0.497	0.872	3.803	nan	0.991	0.727	0.073	0.091	0.147	0.646	0.182	1.112	0.201	0.198
6391	chr5	102756667	102781079	+	0	NA	Intergenic	Intergenic	108813	NR_104670	102467212	Hs.641885	NR_104670	ENSG00000248757	LINC02115	-	long intergenic non-protein coding RNA 2115	ncRNA	0.790	1.155	0.598	0.097	0.306	0.125	0.402	0.234	0.085	0.058	0.110	0.079	0.234	0.049	0.124	0.459	0.608	2.241	6.073	0.293	0.365	0.162	0.074	0.096	0.097	0.962	1.120	0.249	0.226	0.386	0.182	0.137	0.181	0.114	0.189	0.169	0.277	0.364	0.351	0.121	0.179	0.012	0.052	0.402	0.079	0.020	0.150	0.082	0.066
3398	chr17	38801129	38806144	+	0	NA	intron (NM_003079, intron 1 of 10)	MIRb|SINE|MIR	467	NM_003079	6605	Hs.743978	NM_003079	ENSG00000073584	SMARCE1	BAF57|CSS5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	nan	4.899	4.433	2.684	9.727	5.218	4.179	3.331	0.097	3.292	1.956	7.231	10.621	2.820	0.107	11.700	10.853	10.949	13.817	nan	13.799	9.731	7.716	25.049	26.858	4.744	5.662	11.302	17.536	nan	11.364	8.915	12.134	7.348	7.522	10.288	4.730	4.000	2.481	4.519	3.891	0.908	2.152	4.179	7.231	1.666	2.595	1.916	2.027
567	chr1	155096125	155109983	+	0	NA	intron (NM_182685, intron 1 of 3)	intron (NM_182685, intron 1 of 3)	2705	NM_182685	1942	Hs.516664	NM_004428	ENSG00000169242	EFNA1	B61|ECKLG|EFL1|EPLG1|LERK-1|LERK1|TNFAIP4	ephrin A1	protein-coding	nan	nan	2.795	2.169	1.213	0.783	2.845	0.815	0.244	0.909	0.474	2.673	9.800	3.010	0.156	4.592	5.411	7.023	14.554	3.317	nan	2.077	0.715	1.458	1.562	1.700	2.565	4.175	6.895	1.417	1.250	7.096	10.190	1.304	1.362	2.142	3.714	1.324	0.694	1.102	1.655	0.233	1.349	2.845	2.673	0.567	3.123	6.882	0.579
6120	chr5	366608	432194	+	0	NA	intron (NM_020731, intron 4 of 11)	intron (NM_020731, intron 4 of 11)	43874	NR_126522	116349	Hs.446702	NM_138464	ENSG00000221990	EXOC3-AS1	C5orf55	EXOC3 antisense RNA 1	ncRNA	0.809	2.021	2.817	0.928	1.499	0.801	4.227	0.573	0.180	2.965	1.557	2.367	1.617	0.114	0.109	2.117	2.901	1.827	nan	6.681	6.824	4.589	2.139	0.691	0.692	0.377	0.685	nan	4.652	nan	1.432	0.866	1.091	0.856	0.641	0.088	0.121	3.859	nan	2.716	3.876	0.103	0.078	4.227	2.367	1.349	3.342	0.361	0.021
4925	chr20	32102978	32123988	+	0	NA	intron (NM_001032999, intron 1 of 10)	AluJr|SINE|Alu	35555	NM_001032999	9139	Hs.153934	NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 translocation partner 2	protein-coding	1.412	2.302	3.378	2.623	2.297	1.062	0.367	0.895	0.398	1.310	0.669	1.732	1.601	0.133	0.151	0.987	1.111	0.555	0.722	2.773	nan	4.901	2.036	1.374	1.407	2.175	2.703	4.752	5.606	1.942	1.177	0.422	0.644	1.125	2.077	0.923	nan	1.710	0.904	0.811	1.351	0.399	0.521	0.367	1.732	0.184	0.750	0.170	0.694
8170	chr9	80925755	80931565	+	0	NA	intron (NM_058179, intron 6 of 8)	AluJr4|SINE|Alu	16669	NM_021154	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|NLS2|PSA|PSAT|PSATD	phosphoserine aminotransferase 1	protein-coding	0.662	0.813	1.135	0.450	0.522	0.269	0.226	0.154	0.027	0.352	0.258	0.231	0.496	0.094	0.121	1.876	2.772	9.018	4.434	0.460	0.560	0.402	0.084	2.245	2.306	0.344	0.725	1.206	2.093	0.327	0.320	0.955	1.304	0.238	0.252	0.140	0.347	0.641	0.532	0.110	0.176	0.050	0.041	0.226	0.231	0.478	0.035	0.492	0.087
4897	chr20	24940620	24954992	+	0	NA	intron (NM_020531, intron 8 of 8)	AluSx3|SINE|Alu	17940	NM_003650	8530	Hs.143212	NM_003650	ENSG00000077984	CST7	CMAP	cystatin F	protein-coding	1.666	1.440	nan	0.146	0.176	0.111	0.170	0.157	0.100	0.190	0.120	0.283	0.442	0.062	0.080	0.633	0.722	0.354	0.367	0.885	0.788	0.551	0.192	0.433	0.427	0.557	0.839	1.370	1.691	5.654	5.266	0.328	0.502	0.309	0.361	1.701	3.889	1.040	0.751	0.116	0.154	0.073	0.050	0.170	0.283	1.014	0.105	0.048	2.125
2079	chr12	92679340	92686855	+	0	NA	Intergenic	Intergenic	-132210	NR_027932	574028	Hs.730377	NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	protein-coding	0.812	0.779	0.767	0.189	0.215	0.171	0.185	0.157	0.043	0.107	0.205	0.126	nan	0.100	0.145	5.171	3.914	20.012	11.879	0.354	0.658	0.328	0.171	5.347	5.357	2.846	nan	0.402	nan	1.263	1.768	2.399	4.828	0.120	0.195	0.324	0.631	0.663	0.783	0.313	0.187	0.041	0.043	0.185	0.126	0.051	0.054	0.802	0.197
2974	chr15	85985822	86048605	+	0	NA	intron (NM_007200, intron 1 of 36)	intron (NM_007200, intron 1 of 36)	93366	NM_006738	11214	Hs.459211	NM_006738	ENSG00000170776	AKAP13	AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47	A-kinase anchoring protein 13	protein-coding	1.008	nan	1.003	0.158	0.457	0.205	0.283	0.335	0.143	0.108	0.152	0.255	0.388	0.066	0.078	0.621	0.615	0.687	1.294	0.306	0.371	0.512	0.134	0.209	0.173	0.525	0.838	0.601	0.816	0.763	0.420	0.713	0.903	0.631	0.894	1.447	3.914	0.604	0.389	0.057	0.085	0.218	0.156	0.283	0.255	0.157	0.178	0.893	0.309
5511	chr3	123302451	123306420	+	0	NA	promoter-TSS (NR_038266)	promoter-TSS (NR_038266)	75	NR_121654	100506826	Hs.556600	NR_038266	ENSG00000239523	MYLK-AS1	-	MYLK antisense RNA 1	ncRNA	9.506	nan	4.501	6.128	7.386	3.555	2.811	3.579	0.203	4.505	2.015	5.712	12.173	3.445	0.085	9.156	7.591	7.221	12.470	8.966	6.944	17.629	8.577	16.620	17.599	8.544	nan	5.875	9.715	14.676	17.255	5.731	6.477	4.663	5.214	9.347	7.157	4.415	2.662	6.502	5.635	0.744	3.455	2.811	5.712	2.317	2.248	2.319	2.177
800	chr1	203829402	203835979	+	0	NA	intron (NM_003094, intron 2 of 4)	AluSc|SINE|Alu	1712	NM_001328637	6635	Hs.334612	NM_003094	ENSG00000182004	SNRPE	HYPT11|SME|Sm-E|snRNP-E	small nuclear ribonucleoprotein polypeptide E	protein-coding	4.655	2.730	3.709	3.081	3.529	1.535	3.169	1.333	0.544	1.823	0.826	2.512	3.825	2.254	0.148	4.478	3.969	7.677	9.968	6.860	6.609	5.015	2.031	nan	nan	4.390	5.810	5.304	7.335	4.956	5.385	2.140	3.142	3.956	5.095	4.379	5.557	3.222	1.869	1.554	1.796	0.526	0.821	3.169	2.512	0.666	1.411	1.464	1.141
1365	chr11	31775459	31792952	+	0	NA	intron (NM_001288726, intron 10 of 11)	intron (NM_001288726, intron 10 of 11)	41580	NM_001310161	5080	Hs.270303	NM_000280	ENSG00000007372	PAX6	AN|AN2|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding	0.878	0.953	nan	0.101	0.248	0.110	0.388	0.138	0.074	0.161	0.123	0.062	0.300	0.068	0.121	0.490	0.387	0.202	0.243	0.261	0.388	0.294	0.183	0.290	0.263	5.942	6.420	0.140	0.182	0.509	0.220	0.200	0.357	0.299	0.258	0.290	nan	1.022	0.667	0.120	0.112	0.055	0.158	0.388	0.062	0.079	0.035	0.051	0.114
3613	chr17	79359532	79404136	+	0	NA	intron (NM_001291324, intron 1 of 27)	intron (NM_001291324, intron 1 of 27)	-7256	NR_039894	100616294		NR_039894	ENSG00000266392	MIR4740	-	microRNA 4740	ncRNA	2.085	3.569	2.759	2.301	2.550	1.398	4.270	2.975	0.558	0.380	0.207	3.384	6.961	1.641	0.103	5.148	5.593	2.806	4.565	6.047	4.798	2.711	0.927	2.346	2.440	nan	2.226	2.756	3.880	2.663	2.270	2.315	3.727	1.404	1.393	0.328	0.617	nan	0.870	3.777	3.436	0.416	1.132	4.270	3.384	0.544	3.806	1.508	0.146
7083	chr6	160141650	160153096	+	0	NA	promoter-TSS (NM_001270532)	promoter-TSS (NM_001270532)	603	NM_001322820	6648	Hs.487046	NM_000636	ENSG00000112096	SOD2	IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD	superoxide dismutase 2, mitochondrial	protein-coding	4.326	nan	3.954	4.074	3.767	1.711	3.134	1.283	0.196	1.024	0.695	3.221	5.746	2.636	0.117	6.012	4.945	4.923	6.972	6.957	6.728	7.592	5.021	10.010	9.957	2.182	2.750	3.933	6.499	nan	8.406	3.591	6.085	4.266	4.941	6.500	5.038	1.587	0.956	3.039	2.708	0.910	1.468	3.134	3.221	0.681	1.870	1.450	1.581
7128	chr7	2028016	2043575	+	0	NA	intron (NM_001013836, intron 14 of 18)	intron (NM_001013836, intron 14 of 18)	-55609	NM_001304525	8379	Hs.654838	NM_003550	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient like 1	protein-coding	1.471	1.699	2.228	0.787	0.346	0.134	0.971	0.206	0.088	0.141	0.126	1.489	nan	0.091	0.088	0.521	0.749	0.213	nan	5.065	4.104	nan	0.564	0.718	0.783	0.472	0.798	nan	6.333	0.409	0.338	0.282	0.376	0.300	0.334	0.572	1.010	0.608	0.448	4.567	0.314	0.067	0.215	0.971	1.489	0.126	2.302	0.044	0.285
1568	chr11	91955201	91976302	+	0	NA	Intergenic	Intergenic	-119511	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10|hFat3	FAT atypical cadherin 3	protein-coding	1.163	nan	0.626	1.037	0.194	0.116	1.039	0.419	0.129	0.122	0.122	0.091	5.812	0.493	0.131	7.399	9.537	2.431	nan	3.335	2.598	0.260	0.078	9.098	9.030	1.187	1.631	1.607	1.841	0.775	0.745	3.607	8.015	3.382	2.523	0.357	nan	1.122	0.693	1.575	0.249	1.244	0.509	1.039	0.091	0.023	0.534	5.105	0.146
5040	chr20	61445365	61472321	+	0	NA	intron (NM_001853, intron 16 of 31)	intron (NM_001853, intron 16 of 31)	10429	NM_001853	1299	Hs.716639	NM_001853	ENSG00000092758	COL9A3	DJ885L7.4.1|EDM3|IDD|MED	collagen type IX alpha 3 chain	protein-coding	1.925	1.436	0.832	0.315	0.417	0.166	0.385	0.172	0.101	0.163	0.140	0.434	1.076	0.293	0.096	3.046	nan	0.907	1.224	0.890	0.819	0.865	0.261	0.827	0.953	0.388	0.679	0.347	0.347	0.780	0.702	1.009	1.433	0.131	0.167	0.336	0.521	0.808	0.632	0.561	0.400	0.021	0.143	0.385	0.434	0.793	0.402	0.652	0.114
3399	chr17	39163583	39169517	+	0	NA	Intergenic	MER30|DNA|hAT-Charlie	-1184	NM_031958	83896	Hs.307027	NM_031958	ENSG00000212901	KRTAP3-1	KAP3.1|KRTAP3.1	keratin associated protein 3-1	protein-coding	nan	0.911	3.822	0.073	3.396	1.557	0.091	0.289	0.081	0.348	0.168	2.091	0.599	0.036	0.104	0.393	0.407	9.695	5.780	nan	3.487	1.231	0.136	2.051	2.066	0.134	0.226	6.249	5.178	nan	0.157	0.281	0.369	0.170	0.183	0.147	0.209	0.917	0.592	0.344	0.121	0.048	1.375	0.091	2.091	0.033	0.120	0.149	0.061
2844	chr15	37166608	37199312	+	0	NA	TTS (NM_170674)	TTS (NM_170674)	-4226	NR_024264	145845	Hs.302693	NM_001101327		LOC145845	-	uncharacterized LOC145845	ncRNA	0.972	nan	nan	0.064	0.299	0.172	0.297	0.313	0.044	0.316	0.314	0.056	0.286	2.466	0.109	0.529	1.163	0.610	0.536	0.269	0.304	0.359	0.159	0.229	0.238	0.841	1.030	0.219	0.256	0.741	0.351	0.606	1.015	2.722	2.146	1.330	2.345	0.661	0.522	0.029	0.074	0.941	0.153	0.297	0.056	0.021	0.034	0.660	0.994
6804	chr6	51212102	51218411	+	0	NA	Intergenic	Intergenic	-271412	NR_125840	101927082	Hs.730296	NR_125840		LOC101927082	-	uncharacterized LOC101927082	ncRNA	0.770	1.293	nan	0.172	0.348	0.255	0.306	0.082	0.205	0.050	0.117	0.580	0.509	0.035	0.089	0.983	0.716	9.041	7.499	0.379	0.561	0.107	0.161	0.728	0.643	0.188	0.307	0.529	0.390	0.270	0.092	0.390	0.652	0.217	0.386	0.245	0.624	0.219	0.478	0.009	0.126	0.060	0.351	0.306	0.580		0.016	0.095	0.077
5230	chr22	28765779	28780073	+	0	NA	intron (NM_001145418, intron 2 of 22)	L1MEc|LINE|L1	-82931	NR_106713	102466081		NR_106713	ENSG00000276162	MIR5739	hsa-mir-5739	microRNA 5739	ncRNA	nan	0.632	0.710	0.092	0.289	0.146	0.207	1.046	0.180	0.055	0.076	0.167	0.212	0.023	0.076	0.417	0.193	0.249	nan	0.191	0.295	0.548	0.117	0.450	0.379	4.176	nan	0.213	0.266	0.588	0.374	0.084	0.162	0.219	0.370	0.357	nan	1.131	0.934	0.058	0.087	0.027	0.039	0.207	0.167	0.047	0.057	0.014	0.182
3575	chr17	75717346	75746582	+	0	NA	Intergenic	Intergenic	-7323	NR_104134	100132174	Hs.640110	NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA	1.544	1.153	1.196	0.099	1.508	0.845	1.300	0.432	0.094	0.530	0.412	5.052	2.900	0.054	0.089	2.062	4.665	0.165	0.245	3.374	3.397	0.257	0.111	0.334	0.406	nan	0.879	4.355	4.418	1.448	1.121	0.902	1.306	0.164	0.184	0.847	2.286	nan	0.478	3.917	2.818	0.023	0.076	1.300	5.052	0.307	0.517	1.000	0.287
3031	chr16	3027122	3040346	+	0	NA	Intergenic	Intergenic	-3194	NM_001258450	9088	Hs.732385	NM_004203	ENSG00000127564	PKMYT1	MYT1|PPP1R126	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	2.543	nan	3.927	1.886	1.434	0.821	1.160	0.424	0.222	0.766	0.421	0.906	4.906	1.092	0.099	1.854	2.179	0.927	1.131	2.026	2.030	nan	1.281	2.501	2.562	1.474	nan	1.449	2.118	3.942	3.957	0.749	1.082	3.699	4.143	1.961	4.605	1.855	0.927	2.363	2.437	1.293	0.496	1.160	0.906	1.255	0.845	0.207	1.886
5775	chr3	191284609	191291619	+	0	NA	intron (NR_120606, intron 5 of 6)	L1M5|LINE|L1	109162	NM_001083308	152138	Hs.690618	NM_001083308		PYDC2	POP2|cPOP2	pyrin domain containing 2	protein-coding	nan	0.996	0.723	0.149	0.281	0.111	0.067	0.203	0.160	0.146	0.176	0.035	nan	0.031	0.060	0.294	0.161	6.648	2.133	0.267	0.367	0.344	0.164	0.412	0.668	0.736	0.881	0.300	0.266	0.750	0.244	0.136	0.248	0.162	0.105	0.380	0.805	0.399	0.518	0.039	0.037	0.041	0.112	0.067	0.035			0.027	0.152
7075	chr6	158422795	158465602	+	0	NA	intron (NM_003898, intron 2 of 26)	AluJo|SINE|Alu	6118	NM_001178088	8871	Hs.434494	NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding	nan	0.944	0.994	0.353	0.623	0.381	1.414	1.170	0.132	0.218	0.092	0.302	0.855	0.118	0.112	0.814	1.298	2.209	5.322	0.650	nan	2.096	0.541	0.672	0.802	0.339	0.713	0.805	1.029	0.672	0.492	0.350	0.466	0.974	2.438	0.417	nan	0.611	0.491	0.980	0.182	0.198	0.176	1.414	0.302	0.182	0.377	0.069	0.255
7767	chr8	81031972	81066948	+	0	NA	intron (NR_105035, intron 1 of 6)	L1MB7|LINE|L1	33975	NR_105037	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding	1.786	nan	nan	2.872	2.235	1.090	1.087	0.392	0.110	0.840	0.483	2.290	3.495	0.084	0.085	2.949	3.348	3.692	3.554	2.625	3.099	2.734	1.514	0.447	0.446	0.878	1.138	nan	4.142	1.413	1.643	1.960	3.469	1.505	1.215	0.924	2.194	3.041	1.736	2.779	1.700	0.302	0.238	1.087	2.290	0.114	0.278	3.408	0.233
1062	chr10	21260756	21293192	+	0	NA	intron (NM_001173484, intron 3 of 6)	L1M5|LINE|L1	-90443	NM_006393	10529	Hs.5025	NM_006393	ENSG00000078114	NEBL	LASP2|LNEBL	nebulette	protein-coding	0.744	0.865	0.649	0.184	0.251	0.119	0.130	0.132	0.114	0.082	0.086	0.124	0.211	0.421	0.093	0.512	0.367	0.368	0.573	0.211	0.244	4.702	1.417	0.134	0.106	0.148	0.218	0.278	0.310	0.186	0.090	0.317	0.632	0.510	0.554	0.262	0.769	0.342	0.274	0.005	0.162	0.111	0.096	0.130	0.124	0.012	0.080	0.226	0.084
3159	chr16	68766017	68795112	+	0	NA	intron (NM_004360, intron 2 of 15)	intron (NM_004360, intron 2 of 15)	4145	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA	nan	nan	1.435	2.446	2.462	1.179	0.299	0.173	0.156	0.544	0.238	2.691	3.405	0.077	0.071	1.110	1.320	0.398	0.782	1.752	1.539	1.366	0.379	1.683	1.755	0.082	nan	3.106	4.314	0.436	0.260	1.303	2.218	0.218	0.307	0.137	0.299	1.630	0.816	1.209	0.761	0.052	0.878	0.299	2.691	0.374	0.100	1.451	0.034
7392	chr7	95923738	95961638	+	0	NA	intron (NR_027662, intron 1 of 16)	L1PA16|LINE|L1	8771	NM_014251	10165	Hs.489190	NM_014251	ENSG00000004864	SLC25A13	ARALAR2|CITRIN|CTLN2	solute carrier family 25 member 13	protein-coding	nan	1.042	nan	0.516	1.581	0.811	0.744	0.575	0.085	0.461	0.358	0.764	1.598	0.558	0.164	1.179	1.408	6.724	7.905	1.023	1.010	1.658	0.615	1.914	1.982	1.147	1.400	0.777	1.102	1.009	1.159	0.592	1.346	1.740	1.949	1.023	nan	1.316	0.874	0.763	0.509	0.463	0.636	0.744	0.764	0.323	0.198	0.491	0.458
3112	chr16	30568139	30587111	+	0	NA	Intergenic	Intergenic	6103	NM_001024683	146542	Hs.301463	NM_145271	ENSG00000229809	ZNF688	-	zinc finger protein 688	protein-coding	2.971	1.998	1.963	4.239	2.728	1.251	2.101	0.662	0.268	0.559	0.413	2.611	6.578	1.122	0.109	2.552	2.487	1.423	2.311	3.120	2.929	4.771	1.909	4.246	4.457	1.889	2.514	4.906	6.792	3.794	3.659	1.882	2.493	2.849	2.923	2.279	3.476	1.771	1.077	1.848	1.607	0.657	1.192	2.101	2.611	1.099	1.319	0.712	1.012
7836	chr8	102083990	102106078	+	0	NA	Intergenic	HAL1|LINE|L1	30752	NR_033962	441374	Hs.652045	NR_033962	ENSG00000248599	FLJ42969	-	uncharacterized LOC441374	ncRNA	1.804	nan	nan	1.265	0.877	0.443	1.694	0.232	0.066	0.544	0.205	1.204	3.385	0.054	0.075	0.684	0.809	0.640	1.435	2.923	2.840	nan	1.284	1.387	1.526	0.414	nan	4.459	nan	nan	0.501	0.719	0.954	2.315	2.134	0.366	nan	2.091	1.156	3.017	1.600	0.409	0.273	1.694	1.204	0.475	0.537	0.410	0.095
3169	chr16	72228825	72246855	+	0	NA	Intergenic	Intergenic	-31491	NM_001160213	83449	Hs.714939	NM_031293	ENSG00000118557	PMFBP1	-	polyamine modulated factor 1 binding protein 1	protein-coding	0.911	2.597	nan	2.095	4.382	2.662	1.328	0.087	0.068	0.255	0.172	2.918	3.155	0.072	0.065	0.363	0.376	0.141	0.219	0.592	0.769	6.217	1.645	0.571	0.596	0.361	0.606	3.985	4.048	1.351	1.030	0.121	0.256	0.635	0.571	0.137	0.225	4.232	1.914	0.056	0.330	0.079	0.242	1.328	2.918	0.602	0.209	0.017	0.090
7381	chr7	94137637	94146570	+	0	NA	intron (NM_022900, intron 1 of 17)	MER104|DNA|TcMar-Tc2	2933	NM_022900	64921	Hs.260041	NM_022900	ENSG00000127995	CASD1	C7orf12|NBLA04196	CAS1 domain containing 1	protein-coding	nan	2.782	nan	3.018	5.669	2.979	3.071	1.079	0.107	3.819	2.745	5.422	4.995	3.677	0.208	4.352	4.405	3.520	4.952	8.633	9.813	4.714	2.313	7.296	7.269	6.263	7.280	3.839	5.382	6.918	7.296	5.119	7.568	4.786	4.301	4.744	nan	7.609	3.773	3.251	4.487	1.267	2.636	3.071	5.422	0.957	2.113	1.299	1.161
2609	chr14	57188317	57289452	+	0	NA	Intergenic	Intergenic	33497	NM_172337	5015	Hs.288655	NM_021728	ENSG00000165588	OTX2	CPHD6|MCOPS5	orthodenticle homeobox 2	protein-coding	nan	nan	3.068	0.339	0.591	0.321	0.473	0.090	0.093	0.126	0.147	0.308	0.285	0.049	0.112	0.287	0.232	2.400	2.100	0.462	0.542	0.837	0.320	0.421	0.436	0.137	0.208	0.689	0.608	7.227	6.767	0.229	0.332	0.906	1.283	7.893	15.311	nan	0.630	0.035	0.164	0.367	0.134	0.473	0.308	0.158	0.041	0.114	6.323
6476	chr5	140888484	140906206	+	0	NA	intron (NM_001079812, intron 26 of 26)	intron (NM_001079812, intron 26 of 26)	28537	NM_018929	56097	Hs.368160	NM_018929	ENSG00000240764	PCDHGC5	PCDH-GAMMA-C5	protocadherin gamma subfamily C, 5	protein-coding	nan	1.078	1.282	0.140	0.335	0.127	1.359	5.097	0.436	0.195	0.191	1.014	1.091	0.809	0.097	0.855	0.852	2.868	6.025	0.843	0.744	2.385	0.589	0.868	0.845	1.913	2.683	0.400	0.525	1.293	1.012	0.850	1.007	0.794	0.725	0.437	0.832	1.101	0.658	2.663	1.298	0.195	0.403	1.359	1.014	0.555	0.145	0.787	0.113
445	chr1	110774538	110787813	+	0	NA	Intergenic	L2b|LINE|L2	27839	NM_004978	3749	Hs.153521	NM_004978	ENSG00000116396	KCNC4	C1orf30|HKSHIIIC|KSHIIIC|KV3.4	potassium voltage-gated channel subfamily C member 4	protein-coding	nan	1.769	2.372	1.823	1.507	0.725	0.620	0.097	0.115	0.282	0.162	1.296	1.292	0.067	0.101	0.594	0.875	0.283	0.567	2.288	nan	2.592	0.506	0.418	0.490	0.957	1.792	4.295	3.594	0.786	0.564	0.472	0.633	0.656	0.657	0.367	0.628	0.865	0.622	6.126	0.461	0.131	0.726	0.620	1.296	0.177	0.512	0.127	0.084
5363	chr3	44035771	44042264	+	0	NA	Intergenic	CpG	-116687	NR_029700	406929		NR_029700	ENSG00000207954	MIR138-1	MIRN138-1|mir-138-1	microRNA 138-1	ncRNA	0.600	nan	nan	0.541	0.310	0.074	0.432	0.633		0.820	0.478	0.535	15.455	0.082	0.066	1.239	0.927	1.849	2.863	4.381	3.612	2.026	0.432	5.216	5.360	0.139	0.238	2.174	5.438	2.425	2.892	0.355	0.712	0.052	0.069	0.822	1.117	0.380	0.267	0.907	0.742		1.011	0.432	0.535	0.015	0.016	0.106	0.362
4002	chr19	24167468	24185394	+	0	NA	Intergenic	Intergenic	-39776	NM_001278661	9534	Hs.434406	NM_004876	ENSG00000213096	ZNF254	BMZF-5|HD-ZNF1|ZNF539|ZNF91L	zinc finger protein 254	protein-coding	nan	0.626	1.091	3.522	0.298	0.089	0.100	0.074	0.090	0.123	0.106	1.345	0.857	0.054	0.141	0.313	0.293	0.495	0.841	0.413	0.530	6.474	0.955	1.317	1.538	0.174	0.319	2.748	4.392	0.272	0.112	0.093	0.117	0.523	0.878	0.211	0.363	2.042	0.947	0.227	0.030	0.038	0.535	0.100	1.345	0.097	0.504	0.013	0.092
3866	chr18	60842707	60885650	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	122435	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding	0.866	1.105	1.727	2.034	1.475	0.855	0.445	0.126	0.068	0.541	0.240	0.851	4.893	0.063	0.072	0.976	1.162	2.122	2.220	1.581	1.720	3.889	1.449	1.629	nan	0.203	nan	5.161	4.826	0.357	0.167	1.750	2.625	1.028	1.885	0.131	0.188	5.050	2.814	3.213	1.186	0.258	0.385	0.445	0.851	0.106	1.159	2.252	0.069
4741	chr2	226262275	226274586	+	0	NA	intron (NM_020864, intron 1 of 5)	intron (NM_020864, intron 1 of 5)	2828	NM_020864	57624	Hs.224409	NM_020864	ENSG00000144460	NYAP2	KIAA1486	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	protein-coding	nan	0.736	0.609	0.350	3.928	2.085	0.646	0.073	0.039	1.323	1.156	2.137	nan	0.079	0.132	0.759	0.894	0.270	0.151	7.574	7.472	1.875	0.901	0.225	0.291	3.119	3.189	1.504	nan	2.189	2.070	0.173	0.162	2.433	1.884	0.341	nan	2.213	1.167	0.530	0.816	0.509	0.427	0.646	2.137	0.245	1.259	0.024	0.040
3781	chr18	45642537	45670478	+	0	NA	intron (NM_001318841, intron 3 of 4)	intron (NM_001318841, intron 3 of 4)	7173	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding	nan	2.599	1.056	1.507	1.116	0.515	1.035	0.045	0.080	0.124	0.091	3.968	3.802	0.031	0.070	0.386	0.396	2.029	1.940	2.659	2.920	2.281	0.702	0.198	0.258	0.276	0.505	1.875	1.966	1.253	1.514	0.263	0.295	1.459	1.442	0.417	nan	2.759	1.663	3.794	3.137	0.338	0.082	1.035	3.968	0.132	0.247	0.039	0.482
6763	chr6	41421113	41428474	+	0	NA	Intergenic	Intergenic	-45389	NR_120347	103106903	Hs.563396	NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA	1.829	1.232	1.405	1.574	2.575	1.155	1.002	0.131	0.111	0.957	0.322	6.815	1.640	0.059	0.078	0.705	0.957	0.288	0.585	4.798	4.952	5.936	3.742	0.397	0.397	0.112	0.264	7.037	8.421	0.507	0.282	0.506	1.191	3.127	1.798	0.202	0.575	3.211	2.021	0.173	0.701	0.786	0.151	1.002	6.815	0.074	0.844	0.633	0.055
7099	chr6	168456887	168468573	+	0	NA	intron (NM_024919, intron 7 of 10)	intron (NM_024919, intron 7 of 10)	13816	NM_001122841	79981	Hs.266746	NM_024919	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding	0.770	nan	1.655	3.181	1.632	0.728	1.221	0.020	0.027	0.295	0.303	5.844	2.923	0.093	0.067	0.440	0.402	0.267	0.398	9.931	10.721	1.562	0.265	0.142	0.128	0.029	0.147	4.477	4.682	nan	0.330	0.508	0.584	0.263	0.151	0.101	0.102	1.098	0.718	4.076	2.512	0.074	0.367	1.221	5.844	0.109	0.087	0.076	0.022
4603	chr2	175199482	175207775	+	0	NA	Intergenic	Intergenic	3807	NM_001145250	100131390	Hs.516603	NM_001145250	ENSG00000217236	SP9	ZNF990	Sp9 transcription factor	protein-coding	2.919	2.601	1.053	0.391	3.045	1.440	1.848	0.403	0.056	1.519	0.802	2.253	10.158	3.490	0.062	0.374	0.290	0.837	0.816	1.483	1.072	2.540	0.659	0.894	0.858	2.043	2.743	0.948	1.458	1.177	1.334	0.744	1.407	0.454	0.474	0.417	0.879	0.948	0.599	1.913	0.353	0.030	1.380	1.848	2.253	0.302	1.114	0.142	0.164
6284	chr5	59054945	59066152	+	0	NA	intron (NM_001165899, intron 3 of 16)	AluSz6|SINE|Alu	3890	NM_001197218	5144	Hs.117545	NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding	nan	nan	3.965	0.196	2.165	1.320	0.617	0.307	0.129	1.346	0.663	0.430	1.089	0.949	0.147	0.320	0.247	0.377	1.041	0.397	0.465	nan	2.164	0.009		2.722	3.761	1.032	1.370	nan	0.413	0.099	0.084	5.507	6.274	2.219	4.502	1.190	0.853	0.054	0.112	1.311	0.065	0.617	0.430		0.582	0.021	1.305
1858	chr12	18608127	18637482	+	0	NA	intron (NM_004570, intron 17 of 31)	intron (NM_004570, intron 17 of 31)	208330	NM_004570	5288	Hs.22500	NM_004570	ENSG00000139144	PIK3C2G	PI3K-C2-gamma|PI3K-C2GAMMA	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	0.722	0.665	1.057	0.224	0.303	0.148	0.168	0.258	0.044	0.134	0.181	0.045	0.304	0.032	0.132	0.256	0.179	0.237	0.320	nan	0.456	3.940	1.297	0.354	0.316	0.669	1.124	0.345	0.396	0.431	0.234	0.103	0.174	0.030	0.062	0.304	0.675	0.403	0.317	0.097	0.109	0.016	0.379	0.168	0.045	0.010	0.017	0.037	0.156
6486	chr5	143683677	143697386	+	0	NA	intron (NM_020768, intron 3 of 3)	intron (NM_020768, intron 3 of 3)	140094	NM_020768	57528	Hs.7093	NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding	nan	0.915	0.854	0.550	0.312	0.082	0.074	0.119	0.106	1.490	1.237	0.236	2.711	0.048	0.109	0.184	0.090	0.210	0.389	0.412	0.487	3.916	1.014	0.063	0.040	3.524	4.192	0.800	0.736	1.034	0.978	0.151	0.147	5.747	6.680	0.526	1.532	0.669	0.451	0.077	0.137	1.602	0.362	0.074	0.236	0.154	0.082	0.043	0.190
718	chr1	184019360	184034444	+	0	NA	intron (NM_001127394, intron 3 of 3)	intron (NM_001127394, intron 3 of 3)	6117	NR_125335	116461	Hs.548197	NM_052965	ENSG00000198860	TSEN15	C1orf19|PCH2F|sen15	tRNA splicing endonuclease subunit 15	protein-coding	nan	nan	2.403	1.332	0.877	0.384	0.953	3.013	0.267	0.880	0.423	0.873	1.853	6.286	0.191	1.842	2.062	2.453	3.287	2.395	nan	1.332	0.464	nan	3.778	2.645	3.072	1.915	1.762	1.536	1.378	2.089	3.341	1.526	1.305	1.551	nan	1.066	0.675	0.772	0.842	0.341	0.611	0.953	0.873	0.303	0.444	0.676	0.695
7678	chr8	53358330	53387182	+	0	NA	Intergenic	Intergenic	-50317	NM_014682	9705	Hs.655499	NM_014682	ENSG00000147488	ST18	NZF3|ZC2H2C3|ZC2HC10|ZNF387	ST18, C2H2C-type zinc finger	protein-coding	1.044	nan	1.598	0.213	0.306	0.089	0.169	0.071	0.077	0.065	0.115	0.133	0.602	0.053	0.115	8.180	7.256	8.635	5.342	0.455	0.615	0.424	0.166	14.733	15.022	0.290	nan	0.515	0.574	0.524	0.162	6.023	7.069	0.177	0.348	0.245	0.464	0.762	0.626	0.012	0.089	0.029	0.080	0.169	0.133	0.050	0.148	5.280	0.069
6520	chr5	154663252	154672799	+	0	NA	Intergenic	Intergenic	274710	NM_001099293	285643	Hs.567824	NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding	0.983	nan	1.001	0.113	0.524	0.281	0.361	0.077		0.099	0.194	0.295	0.431	0.022	0.091	0.312	0.124	0.263	0.279	0.402	0.280	0.269	0.103	0.039	0.087	0.272	0.469	0.330	0.297	0.566	0.312	0.092	0.119	4.223	6.008	0.745	2.574	1.012	0.656	0.234	0.259	1.365	0.140	0.361	0.295	0.116	0.032	0.052	1.825
4689	chr2	208254232	208278459	+	0	NA	Intergenic	Intergenic	-128271	NM_134442	1385	Hs.516646	NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding	1.048	nan	1.159	1.746	2.450	1.294	0.846	0.349	0.098	0.674	0.504	2.111	5.094	0.049	0.081	0.373	0.501	1.225	1.497	0.713	0.830	0.303	0.079	0.424	0.421	4.319	4.326	0.689	0.802	0.793	0.402	0.242	0.414	1.895	2.157	1.185	2.314	0.762	0.397	2.445	0.456	0.678	0.101	0.846	2.111	0.073	0.893	0.135	0.282
868	chr1	216853613	216902448	+	0	NA	intron (NM_001243511, intron 2 of 7)	intron (NM_001243511, intron 2 of 7)	18784	NM_001243519	2104	Hs.444225	NM_001438	ENSG00000196482	ESRRG	ERR3|ERRgamma|NR3B3	estrogen related receptor gamma	protein-coding	1.385	1.364	6.557	0.675	2.157	1.248	0.435	0.128	0.082	1.342	0.790	0.725	nan	0.058	0.112	0.425	0.337	0.449	0.654	1.047	1.156	nan	0.357	0.601	0.665	1.651	nan	0.357	0.422	3.182	2.940	0.110	0.198	3.710	4.072	4.700	6.720	0.985	0.775	0.019	0.096	0.729	1.430	0.435	0.725	0.296	0.293	0.057	2.319
5189	chr22	20066238	20073132	+	0	NA	intron (NM_022720, intron 1 of 13)	AluSx1|SINE|Alu	1930	NM_001190326	54487	Hs.643452	NM_022720	ENSG00000128191	DGCR8	C22orf12|DGCRK6|Gy1|pasha	DGCR8, microprocessor complex subunit	protein-coding	5.291	nan	3.027	2.419	5.080	2.672	4.850	1.412	0.236	1.733	0.815	5.159	6.555	2.348	0.114	4.721	4.702	6.074	8.477	6.057	6.108	5.884	4.090	10.297	10.222	4.526	6.058	5.113	9.000	6.642	6.829	2.403	3.888	5.532	7.644	4.514	4.499	5.616	3.230	2.200	1.745	1.371	1.521	4.850	5.159	1.168	2.181	0.935	1.374
2035	chr12	79065765	79077039	+	0	NA	Intergenic	Intergenic	-186371	NM_001135805	6857	Hs.310545	NM_005639	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin 1	protein-coding	nan	0.855	0.837	0.101	4.705	2.663	0.216	0.247	0.048	0.235	0.232	0.494	0.380	0.038	0.088	0.306	0.171	0.186	0.254	0.687	0.970	2.711	1.327	0.210	0.249	2.310	2.407	nan	0.584	1.473	1.187	0.118	0.181	0.748	0.642	0.427	0.856	nan	0.825	0.081	0.085	0.135	0.460	0.216	0.494	0.156	0.054	0.061	0.187
6073	chr4	169752449	169758058	+	0	NA	intron (NM_001166110, intron 1 of 11)	intron (NM_001166110, intron 1 of 11)	2097	NM_001166110	23022	Hs.151220	NM_016081	ENSG00000129116	PALLD	CGI-151|CGI151|MYN|PNCA1|SIH002	palladin, cytoskeletal associated protein	protein-coding	nan	8.775	nan	1.201	1.515	0.773	1.368	2.003	0.344	0.609	0.291	4.365	1.611	0.232	0.057	0.237	0.153	4.263	6.607	3.260	2.425	0.366	0.087	1.596	1.721	2.124	2.595	1.327	2.149	2.216	2.430	0.594	0.805	1.725	1.539	0.388	0.572	0.717	0.624	0.010	0.349	0.610	1.505	1.368	4.365	0.433	0.714	0.035	0.177
197	chr1	33720494	33727663	+	0	NA	intron (NM_152493, intron 1 of 8)	intron (NM_152493, intron 1 of 8)	1904	NM_152493	149076	Hs.743358	NM_152493	ENSG00000160094	ZNF362	RN|lin-29	zinc finger protein 362	protein-coding	5.057	nan	6.981	3.638	3.298	1.789	3.948	1.375	0.089	2.166	1.005	10.900	5.410	3.244	0.107	2.176	3.405	5.738	6.975	12.598	11.520	nan	1.286	2.668	2.515	3.212	4.368	8.506	12.666	nan	4.913	2.292	4.179	1.323	1.004	3.930	3.955	1.792	nan	2.529	1.947	0.290	2.666	3.948	10.900	0.925	1.334	1.035	1.586
853	chr1	212777795	212783932	+	0	NA	intron (NM_001030287, intron 1 of 3)	CpG	-1107	NM_001674	467	Hs.460	NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding	4.154	4.802	4.912	4.277	3.984	2.219	2.706	2.365	0.078	4.838	1.352	4.912	nan	2.050	0.137	1.446	1.903	7.987	14.383	4.114	3.217	nan	2.692	13.029	13.480	1.314	nan	2.668	6.308	1.552	2.148	0.879	1.426	2.363	2.719	1.765	4.740	1.603	1.308	1.616	3.015	0.281	1.683	2.706	4.912	0.699	1.786	0.342	1.232
4024	chr19	34662034	34670479	+	0	NA	intron (NM_001114093, intron 1 of 10)	AluSz|SINE|Alu	2904	NM_001114093	26065	Hs.744009	NM_015578	ENSG00000257103	LSM14A	C19orf13|FAM61A|RAP55|RAP55A	LSM14A, mRNA processing body assembly factor	protein-coding	6.499	2.511	4.136	6.122	3.701	1.710	2.792	1.843	0.286	2.346	1.182	3.617	9.397	3.412	0.180	3.471	3.664	5.547	8.328	5.628	5.442	6.012	3.055	9.969	10.104	3.978	4.758	5.077	8.756	11.448	10.410	5.301	9.193	4.300	4.735	5.798	5.446	2.905	1.660	3.781	2.274	0.889	1.203	2.792	3.617	1.177	2.070	2.592	2.179
5187	chr22	19592515	19611560	+	0	NA	Intergenic	Intergenic	-47675	NR_024381	150185	Hs.719752	NR_024381		LINC00895	-	long intergenic non-protein coding RNA 895	ncRNA	0.762	nan	0.754	0.443	0.652	0.424	0.370	0.108	0.051	0.849	0.380	1.142	0.588	0.017	0.077	0.455	0.492	0.226	0.303	1.932	1.570	1.657	0.615	0.425	0.415	0.290	0.483	2.408	2.481	0.493	0.244	0.196	0.258	0.308	0.419	0.133	0.208	3.216	1.948	0.114	0.682	0.065	0.071	0.370	1.142	0.141	3.861	0.057	0.013
7487	chr7	132042985	132088931	+	0	NA	intron (NM_020911, intron 3 of 31)	MIRb|SINE|MIR	120338	NR_134565	101928807	Hs.552131	NR_134565		LOC101928807	-	uncharacterized LOC101928807	ncRNA	nan	nan	nan	0.051	0.168	0.105	0.154	0.100	0.091	0.296	0.296	0.062	1.482	0.064	0.129	0.386	0.287	0.158	0.180	0.448	0.560	nan	0.076	0.127	0.148	0.512	nan	0.826	0.808	nan	0.424	0.154	0.194	0.300	0.165	0.299	0.526	3.047	nan	0.962	0.834	0.074	0.071	0.154	0.062	0.296	1.087	0.026	0.105
6265	chr5	53682133	53688317	+	0	NA	intron (NR_126379, intron 1 of 4)	THE1B|LTR|ERVL-MaLR	-66206	NM_006308	8988	Hs.41707	NM_006308	ENSG00000169271	HSPB3	DHMN2C|HMN2C|HSPL27	heat shock protein family B (small) member 3	protein-coding	nan	4.338	1.016	0.358	0.580	0.387	2.108	1.730	0.130	0.638	0.251	0.111	0.952	0.050	0.121	0.211	0.087	0.579	2.715	0.598	0.765	6.361	2.686	0.146	0.091	3.633	3.596	0.562	0.657	nan	0.723	0.040	0.130	6.594	11.006	0.280	1.013	1.609	0.676	0.009	1.858	1.541	0.563	2.108	0.111	2.302	0.050		0.143
4393	chr2	68148503	68183501	+	0	NA	Intergenic	Intergenic	-113308	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA	1.451	0.935	nan	0.359	1.712	0.876	0.469	0.171	0.088	0.323	0.243	0.557	2.443	0.071	0.124	0.307	0.188	0.272	0.466	1.430	1.184	nan	0.119	0.240	0.257	0.218	0.344	0.896	1.220	0.974	1.067	0.125	0.198	0.582	0.393	0.696	2.495	0.346	0.263	1.316	0.333	0.240	0.068	0.469	0.557	0.045	0.438	0.037	0.693
2136	chr12	109740283	109750577	+	0	NA	intron (NM_213596, intron 2 of 9)	intron (NM_213596, intron 2 of 9)	1595	NM_213596	121643	Hs.528316	NM_213596	ENSG00000139445	FOXN4	-	forkhead box N4	protein-coding	2.335	1.586	nan	1.238	2.450	1.503	0.799	0.180	0.108	0.599	0.302	2.290	2.207	0.704	0.094	1.657	2.357	0.648	2.097	2.561	2.418	4.057	1.542	0.497	0.647	1.353	1.965	1.624	2.223	1.846	2.309	1.403	3.672	3.812	3.248	1.234	1.620	2.148	1.032	0.726	6.859	1.322	2.878	0.799	2.290	0.537	0.020	2.963	0.831
2685	chr14	77562900	77578866	+	0	NA	intron (NM_033426, intron 1 of 3)	L2b|LINE|L2	6305	NM_033426	85457	Hs.709066	NM_033426	ENSG00000198894	CIPC	KIAA1737	CLOCK interacting pacemaker	protein-coding	2.961	1.324	3.555	1.569	1.281	0.592	1.505	1.193	0.219	0.824	0.656	1.553	2.638	1.143	0.151	1.404	1.648	1.543	2.030	2.844	2.616	1.761	1.109	3.962	4.232	1.796	2.622	2.219	nan	3.725	3.702	1.280	2.229	1.911	1.785	1.878	2.527	3.956	nan	4.500	1.772	0.387	1.109	1.505	1.553	0.608	0.778	0.469	0.596
3517	chr17	70109236	70182430	+	0	NA	Intergenic	Intergenic	28672	NM_000346	6662	Hs.647409	NM_000346	ENSG00000125398	SOX9	CMD1|CMPD1|SRA1|SRXX2|SRXY10	SRY-box 9	protein-coding	1.361	0.818	0.907	0.393	0.839	0.406	0.298	0.357	0.161	0.201	0.156	0.538	1.041	0.039	0.105	4.649	5.414	9.815	7.793	0.522	0.575	1.575	0.473	3.399	3.605	nan	1.408	0.907	0.866	1.227	1.125	2.232	3.788	0.406	0.467	0.120	0.226	nan	0.572	0.084	0.119	0.090	0.081	0.298	0.538	0.172	0.073	2.121	0.074
3028	chr16	2511341	2551533	+	0	NA	intron (NM_020705, intron 1 of 6)	intron (NM_020705, intron 1 of 6)	6290	NM_001199107	57465	Hs.353087	NM_020705	ENSG00000162065	TBC1D24	DFNA65|DFNB86|DOORS|EIEE16|FIME|TLDC6	TBC1 domain family member 24	protein-coding	3.388	nan	2.531	1.879	2.200	1.112	0.922	0.338	0.140	1.061	0.486	1.722	4.800	0.461	0.062	4.461	5.735	0.538	0.746	3.298	3.593	nan	1.070	1.552	1.546	1.991	nan	2.164	2.726	5.489	6.500	1.913	3.111	1.973	1.793	2.364	3.831	1.798	0.932	3.243	7.007	0.746	1.784	0.922	1.722	1.525	0.713	1.703	2.164
3978	chr19	13647013	13654514	+	0	NA	Intergenic	AluJr|SINE|Alu	-33489	NM_023035	773	Hs.501632	NM_000068	ENSG00000141837	CACNA1A	APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6	calcium voltage-gated channel subunit alpha1 A	protein-coding	1.137	1.013	0.798	0.634	0.655	0.428	0.229	0.081	0.064	1.045	0.438	1.324	0.828	0.059	0.113	0.206	0.129	0.279	0.374	1.061	0.986	9.834	3.883	0.178	0.110	0.193	0.360	2.328	3.553	0.654	0.273	0.086	0.157	3.625	4.525	0.248	0.288	2.535	1.312	0.593	0.048	0.454	0.096	0.229	1.324	0.273	0.150	0.052	0.066
1111	chr10	43571430	43590403	+	0	NA	intron (NM_020630, intron 1 of 18)	intron (NM_020630, intron 1 of 18)	8399	NM_020975	5979	Hs.350321	NM_000323	ENSG00000165731	RET	CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51	ret proto-oncogene	protein-coding	0.465	nan	1.686	2.794	0.184	0.101	0.135	0.079	0.034	0.139	0.061	0.044	0.769	0.098	0.047	0.573	0.960	0.448	0.559	0.267	0.202	4.286	1.098	0.151	0.168	0.065	0.161	3.228	2.969	0.145	0.054	0.109	0.167	0.344	0.259	0.130	0.130	2.209	1.011	0.193	0.075	0.025	0.016	0.135	0.044	0.036	1.882	0.031	0.033
3249	chr17	4849467	4856287	+	0	NA	promoter-TSS (NM_005022)	promoter-TSS (NM_005022)	-496	NM_005022	5216	Hs.494691	NM_005022	ENSG00000108518	PFN1	ALS18	profilin 1	protein-coding	6.948	2.908	5.158	5.022	9.754	4.701	7.208	2.842	0.330	2.691	1.137	6.442	10.528	4.044	0.115	6.187	9.333	5.334	6.346	8.277	5.706	7.291	2.356	11.647	11.527	2.546	4.398	9.873	12.346	7.352	8.300	2.037	4.421	3.409	2.839	6.280	10.609	2.275	0.856	7.473	5.117	0.976	3.154	7.208	6.442	2.493	7.181	2.815	6.708
4608	chr2	176044362	176047566	+	0	NA	intron (NM_001002258, intron 1 of 3)	intron (NM_001002258, intron 1 of 3)	427	NM_001002258	518	Hs.429	NM_001689	ENSG00000154518	ATP5G3	P3	ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9)	protein-coding	3.727	3.070	2.761	2.469	3.539	2.593	2.757	1.416	0.527	1.817	1.292	3.851	9.282	1.767	0.039	3.247	3.953	7.716	10.168	4.891	4.337	5.044	1.899	8.544	9.788	3.210	4.004	14.418	21.937	5.548	5.618	3.162	6.036	2.306	2.255	4.965	6.875	2.834	1.078	1.628	2.375	0.355	1.636	2.757	3.851	1.197	1.652	2.191	2.980
2238	chr13	23053379	23085750	+	0	NA	Intergenic	Intergenic	285140	NR_103810	100506622	Hs.255773	NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA	0.463	0.639	0.566	0.129	0.118	0.049	0.047	0.102	0.097	0.053	0.058	0.074	0.258	7.395	0.202	0.413	0.262	0.235	nan	0.397	0.441	0.065	0.045	0.206	0.172	0.159	0.283	0.178	0.217	0.463	0.167	0.223	0.288	0.043	0.053	0.153	0.222	0.683	0.588	0.098	0.083	0.023	0.223	0.047	0.074	0.015	0.085	0.095	0.026
6853	chr6	76747714	76751896	+	0	NA	intron (NM_001282368, intron 1 of 15)	intron (NM_001282368, intron 1 of 15)	32590	NM_001563	3617	Hs.590893	NM_001563	ENSG00000112706	IMPG1	GP147|IPM150|SPACR|VMD4	interphotoreceptor matrix proteoglycan 1	protein-coding	nan	nan	0.834	0.089	0.097	0.038	0.092	0.088	0.038	0.112	0.041	0.057	0.143	0.053	0.109	2.860	3.252	10.443	3.998	0.259	0.156	0.449	0.161	0.199	0.204	0.122	0.224	0.023	0.127	0.346	0.105	1.118	1.284	0.104	0.244	0.197	0.317	0.192	0.211	0.026	0.043	0.013	0.152	0.092	0.057		0.024	0.214	0.059
1878	chr12	26841079	26847964	+	0	NA	intron (NM_002223, intron 10 of 56)	intron (NM_002223, intron 10 of 56)	141610	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding	nan	nan	nan	0.312	0.269	0.106	0.187	0.282	0.023	0.298	0.301	0.047	0.421	0.095	0.102	0.270	0.187	0.482	0.895	0.428	0.463	10.890	1.905	0.740	0.844	0.408	0.635	0.932	0.732	0.407	0.187	0.264	0.518	0.938	1.768	0.365	0.988	0.888	0.505	0.063	0.108	0.139	0.058	0.187	0.047	0.097	0.766	0.172	0.351
7269	chr7	44251225	44327924	+	0	NA	intron (NM_172079, intron 5 of 19)	intron (NM_172079, intron 5 of 19)	48996	NM_006555	10652	Hs.520794	NM_006555	ENSG00000106636	YKT6	-	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	2.261	1.745	nan	0.315	0.379	0.184	0.606	0.124	0.082	0.559	0.425	0.510	0.605	0.092	0.100	0.671	0.870	0.251	0.357	2.065	1.851	2.464	0.685	0.577	0.591	0.370	0.671	1.646	2.104	2.110	2.335	0.387	0.403	1.158	1.089	0.804	1.562	1.682	0.930	1.715	0.255	0.265	0.187	0.606	0.510	0.544	0.232	0.050	0.619
5686	chr3	174977891	174994261	+	0	NA	intron (NM_207015, intron 4 of 13)	Tigger3b|DNA|TcMar-Tigger	2809	NR_046713	100874244	Hs.581176	NR_046713		NAALADL2-AS2	-	NAALADL2 antisense RNA 2	ncRNA	1.659	1.641	0.865	0.185	2.642	1.281	1.071	0.297	0.098	0.594	0.648	0.331	0.690	0.079	0.088	0.371	0.209	0.766	3.246	1.082	1.148	1.469	0.471	0.316	0.304	5.431	5.605	0.473	0.454	2.230	2.060	0.104	0.204	3.575	3.647	0.396	0.615	0.409	0.431	0.280	0.411	0.598	0.260	1.071	0.331	0.257	0.018	0.043	0.120
2388	chr13	98527777	98538794	+	0	NA	Intergenic	MER4B|LTR|ERV1	-72644	NM_002271	3843	Hs.712598	NM_002271	ENSG00000065150	IPO5	IMB3|KPNB3|Pse1|RANBP5|imp5	importin 5	protein-coding	0.689	2.581	0.534	0.159	0.215	0.203	0.373	0.110	0.088		0.063	0.269	0.732	0.039	0.095	0.809	0.563	0.259	0.304	0.360	0.344	1.541	0.341	0.164	0.187	0.231	0.355	0.867	0.965	0.267	0.112	2.053	2.389	0.077	0.115	0.190	0.243	0.193	0.192	6.644	0.570	0.043	0.144	0.373	0.269	0.027	0.037	0.952	0.069
8144	chr9	66517750	66528437	+	0	NA	TTS (NR_122077)	TTS (NR_122077)	26624	NR_135010	442421	Hs.585349	NR_024496		PTGER4P2-CDK2AP2P2	-	PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene	pseudo	1.524	3.048	3.534	1.780	1.093	0.629	0.710	0.181	0.083	0.848	0.616	1.352	1.944	0.223	0.206	1.217	1.353	0.900	1.357	1.579	1.790	7.261	2.115	1.393	1.313	4.250	5.023	1.715	1.445	1.586	1.214	1.179	1.896	0.964	0.932	0.989	1.809	2.652	1.984	0.272	0.143	0.258	0.090	0.710	1.352	0.462	0.530	1.399	1.060
1690	chr11	118658929	118669939	+	0	NA	Intergenic	Intergenic	-2462	NM_004397	1656	Hs.408461	NM_004397	ENSG00000110367	DDX6	HLR2|P54|RCK	DEAD-box helicase 6	protein-coding	2.365	2.157	2.150	3.263	3.553	1.940	3.139	0.800	0.131	1.792	1.157	5.233	6.018	3.587	0.146	4.856	nan	5.367	6.893	5.728	6.405	4.590	3.037	8.440	9.217	2.872	nan	5.708	8.574	5.147	4.612	6.628	10.009	3.629	4.058	2.998	2.531	2.201	1.537	3.209	2.551	0.684	2.207	3.139	5.233	0.731	1.548	3.219	1.133
2964	chr15	78348399	78361724	+	0	NA	intron (NM_144572, intron 1 of 12)	intron (NM_144572, intron 1 of 12)	14933	NM_144572	23102	Hs.567426	NM_015079	ENSG00000167202	TBC1D2B	-	TBC1 domain family member 2B	protein-coding	1.066	1.386	2.794	0.204	0.431	0.217	0.288	1.791	0.279	0.304	0.235	0.207	0.537	0.060	0.109	0.844	1.085	0.970	1.258	0.403	0.417	0.610	0.291	0.776	0.806	1.513	1.910	0.578	0.753	5.340	4.718	0.658	0.870	0.248	0.289	0.519	1.588	0.556	0.347	0.108	0.206	0.078	0.074	0.288	0.207	0.437	0.159	0.216	0.435
8224	chr9	101190233	101207781	+	0	NA	intron (NM_005458, intron 7 of 18)	intron (NM_005458, intron 7 of 18)	-181004	NM_018421	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family member 2	protein-coding	1.007	0.700	0.955	0.076	0.539	0.336	0.189	0.080	0.100	0.081	0.138	0.055	0.330	0.086	0.063	0.168	0.109	0.177	0.205	0.395	0.412	0.449	0.155	0.155	0.148	0.262	0.398	0.297	nan	2.335	2.056	0.158	0.159	0.248	0.297	1.471	5.283	nan	0.424	0.013	0.040	0.032	0.041	0.189	0.055	0.143	0.040	0.034	1.894
7090	chr6	162337423	162346490	+	0	NA	intron (NM_013987, intron 5 of 10)	Tigger3b|DNA|TcMar-Tigger	449947	NR_134594	105378098	Hs.691066	NR_134593		LOC105378098	-	uncharacterized LOC105378098	ncRNA	0.763	nan	0.787	0.108	0.421	0.141	1.326	0.106	0.146	0.956	0.330	0.514	0.390	0.025	0.156	0.554	0.405	0.639	0.984	1.059	1.156	4.507	1.531	0.310	0.284	0.208	0.269	0.875	0.976	nan	0.409	0.219	0.270	6.858	7.497	0.136	0.247	1.352	0.866	0.025	0.020	1.535	0.018	1.326	0.514	0.047	0.615	0.054	0.096
617	chr1	161409451	161442489	+	0	NA	Intergenic	CpG	-49235	NM_021642	2212	Hs.352642	NM_021642	ENSG00000143226	FCGR2A	CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2	Fc fragment of IgG receptor IIa	protein-coding	2.832	nan	3.686	0.656	1.465	0.869	1.663	0.467	0.398	1.249	0.658	0.768	3.168	0.717	0.370	0.960	0.564	0.564	0.766	0.789	nan	2.124	0.450	0.423	0.412	1.306	2.439	0.687	nan	3.166	2.780	1.914	2.647	0.975	1.370	2.118	3.768	1.015	0.798	0.234	1.068	0.278	0.240	1.663	0.768	0.465	0.646	0.503	0.716
3943	chr19	4057816	4068230	+	0	NA	intron (NM_015898, intron 1 of 2)	intron (NM_015898, intron 1 of 2)	2504	NM_001317990	51341	Hs.591384	NM_015898	ENSG00000178951	ZBTB7A	FBI-1|FBI1|LRF|TIP21|ZBTB7|ZNF857A|pokemon	zinc finger and BTB domain containing 7A	protein-coding	3.054	1.881	7.757	1.989	2.151	1.285	2.301	1.503	0.217	1.974	0.852	3.852	4.643	2.995	0.080	2.211	3.460	2.203	2.944	3.314	2.750	1.582	0.742	4.990	4.778	1.839	2.625	5.773	nan	4.718	5.130	1.005	1.994	2.193	1.644	2.532	3.898	1.588	0.787	0.902	4.566	0.843	1.373	2.301	3.852	0.878	1.930	0.964	1.582
6932	chr6	122866444	122876969	+	0	NA	intron (NM_001270393, intron 3 of 7)	HAL1|LINE|L1	-59671	NM_032471	5570	Hs.741340	NM_032471	ENSG00000135549	PKIB	PRKACN2	cAMP-dependent protein kinase inhibitor beta	protein-coding	0.932	1.013	0.846	0.310	0.514	0.217	0.193	0.113	0.091	0.701	0.368	1.209	0.297	0.061	0.130	0.418	0.250	0.221	0.206	1.706	2.321	8.365	2.644	0.208	0.170	0.206	0.322	0.396	0.410	0.819	0.601	0.141	0.200	1.362	1.326	0.320	0.818	1.373	0.675	0.021	0.227	0.273	0.128	0.193	1.209	0.175	0.941	0.037	0.094
5244	chr22	33504088	33513394	+	0	NA	intron (NR_134617, intron 3 of 3)	intron (NR_134617, intron 3 of 3)	4226	NR_134617	105373006	Hs.637171	NR_134617	ENSG00000231253	LINC01640	-	long intergenic non-protein coding RNA 1640	ncRNA	nan	1.325	2.817	1.107	0.506	0.189	0.807	0.087	0.087	0.135	0.054	0.856	0.320	0.012	0.076	0.418	0.432	0.184	nan	1.944	1.936	7.271	3.302	0.053	0.072	0.096	nan	1.130	1.700	4.066	4.266	0.154	0.116	0.832	0.869	0.538	nan	1.305	0.785	0.042	0.338	0.370	0.657	0.807	0.856	0.481	0.066	0.054	0.200
4061	chr19	40314109	40337877	+	0	NA	intron (NM_001436, intron 7 of 8)	AluSc|SINE|Alu	-1120	NM_004714	9149	Hs.130988	NM_004714	ENSG00000105204	DYRK1B	AOMS3|MIRK	dual specificity tyrosine phosphorylation regulated kinase 1B	protein-coding	2.416	1.190	2.856	4.027	1.556	1.085	0.840	0.429	0.102	1.119	0.655	1.269	5.794	1.208	0.108	2.219	2.470	1.683	2.421	3.022	2.834	4.514	1.795	4.572	4.874	1.630	2.145	2.175	3.701	4.685	4.327	1.544	2.480	1.971	2.437	2.547	2.747	2.581	1.383	0.928	1.483	0.361	0.416	0.840	1.269	0.383	2.000	0.904	0.668
8206	chr9	95182891	95195922	+	0	NA	intron (NM_001286969, intron 4 of 6)	L1MC1|LINE|L1	-2570	NM_005014	4958	Hs.94070	NM_005014	ENSG00000127083	OMD	OSAD|SLRR2C	osteomodulin	protein-coding	1.171	nan	1.911	0.432	3.853	1.946	0.443	2.018	0.381	0.764	0.495	0.734	0.237	0.075	0.091	0.516	0.929	0.487	nan	1.571	2.542	2.990	0.986	0.167	0.176	0.433	0.657	1.352	1.702	5.430	3.449	0.150	0.316	3.238	4.489	0.647	1.800	2.112	1.025	0.042	0.108	1.536	0.085	0.443	0.734	0.522	0.350	0.085	1.009
7727	chr8	66092516	66109302	+	0	NA	Intergenic	Intergenic	-8334	NR_038901	552859	Hs.156997	NR_038901	ENSG00000280725	LINC00251	C8orf25|NCRNA00251	long intergenic non-protein coding RNA 251	ncRNA	1.592	0.705	0.713	0.227	0.258	0.143	0.143	0.125	0.048	0.112	0.117	0.284	0.321	0.019	0.103	0.270	0.119	0.284	0.273	0.465	0.609	0.114	0.069	0.136	0.130	5.120	nan	0.209	0.227	nan	0.193	0.151	0.239	0.101	0.160	0.366	0.699	0.826	0.663	0.021	0.032	0.056	0.028	0.143	0.284	0.006	0.097	0.035	0.096
7515	chr7	140203495	140218463	+	0	NA	Intergenic	AluY|SINE|Alu	-31610	NM_001291663	23608	Hs.744883	NM_013446	ENSG00000133606	MKRN1	RNF61	makorin ring finger protein 1	protein-coding	1.745	0.711	2.503	1.164	0.354	0.171	1.247	0.217	0.289	0.921	0.682	3.815	1.759	0.188	0.139	0.416	0.461	0.285	0.621	4.095	4.282	3.144	0.862	1.988	1.885	0.625	0.869	3.476	3.535	1.201	0.912	1.118	2.819	2.485	2.103	0.267	0.674	3.697	nan	1.013	2.523	1.171	0.979	1.247	3.815	0.150	0.708	3.887	0.082
2918	chr15	67036481	67073275	+	0	NA	intron (NR_027654, intron 4 of 4)	intron (NR_027654, intron 4 of 4)	60204	NR_027654	4091	Hs.153863	NM_005585	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding	0.704	0.642	nan	0.102	0.305	0.145	0.388	2.168	0.333	0.089	0.081	0.316	0.857	0.138	0.083	0.319	0.353	2.383	7.056	0.396	0.454	nan	0.093	0.259	0.252	0.762	1.140	0.189	0.267	0.549	0.368	0.302	0.418	0.205	0.471	0.307	0.579	0.420	0.427	0.202	0.100	0.026	0.259	0.388	0.316	0.124	0.053	0.091	0.142
5704	chr3	178206756	178213511	+	0	NA	Intergenic	MIR|SINE|MIR	-43953	NM_181361	10242	Hs.478368	NM_005832	ENSG00000197584	KCNMB2	-	potassium calcium-activated channel subfamily M regulatory beta subunit 2	protein-coding	1.196	1.207	0.749	0.141	2.153	1.092	0.018	0.156	0.071	1.673	1.295	0.270	0.394	0.048	0.059	0.182	0.199	0.284	0.362	0.459	0.393	10.349	5.869	0.237	0.294	0.471	0.731	0.422	0.372	0.465	0.255	0.188	0.267	2.020	2.696	0.264	0.408	0.694	0.572	0.008	0.106	0.678	0.093	0.018	0.270		0.045		0.102
3821	chr18	53195061	53225285	+	0	NA	intron (NM_001330604, intron 3 of 19)	intron (NM_001330604, intron 3 of 19)	-32173	NM_001243231	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding	nan	0.868	0.905	0.162	0.336	0.186	0.315	0.156	0.049	0.394	0.281	0.288	0.550	0.449	0.095	0.750	0.596	4.699	2.732	0.939	1.081	4.246	1.474	2.345	2.339	0.856	1.026	0.493	0.515	0.528	0.301	0.443	0.772	3.885	4.181	0.351	0.652	nan	1.011	0.101	0.313	0.777	0.144	0.315	0.288	0.013	0.833	0.419	0.201
6447	chr5	132385502	132389649	+	0	NA	promoter-TSS (NM_002154)	promoter-TSS (NM_002154)	-87	NM_002154	3308	Hs.90093	NM_002154	ENSG00000170606	HSPA4	APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY	heat shock protein family A (Hsp70) member 4	protein-coding	7.024	3.907	5.380	4.523	7.398	3.529	2.340	4.306	0.448	2.201	0.838	4.929	8.914	6.736	0.222	5.705	4.791	9.898	14.901	8.056	7.237	7.974	4.510	23.632	25.556	5.576	7.375	8.502	14.109	12.169	11.899	5.555	10.528	7.213	10.167	8.159	9.026	2.562	1.656	2.701	3.013	1.287	2.885	2.340	4.929	1.509	4.308	1.891	4.494
8254	chr9	120157123	120179970	+	0	NA	intron (NM_014010, intron 1 of 21)	L2a|LINE|L2	8771	NM_014010	23245	Hs.601562	NM_014010	ENSG00000148219	ASTN2	bA67K19.1	astrotactin 2	protein-coding	nan	nan	2.616	2.119	1.146	0.589	0.665	0.048	0.043	0.261	0.147	3.172	nan	0.029	0.085	1.161	1.543	0.153	0.265	4.236	2.890	2.002	0.419	3.021	2.975	0.784	nan	2.338	2.076	1.403	1.172	1.360	3.421	1.403	1.287	0.761	1.982	nan	0.760	3.931	0.599	0.625	1.724	0.665	3.172	0.928	0.266	2.351	0.653
6435	chr5	124173575	124188138	+	0	NA	Intergenic	AluY|SINE|Alu	-100051	NM_020747	57507	Hs.266616	NM_020747	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding	nan	1.246	0.721	0.175	1.032	0.707	0.547	0.585	0.209	0.246	0.244	0.231	1.080	0.210	0.132	0.252	0.214	0.457	nan	0.478	0.411	1.378	0.420	0.395	0.260	1.351	1.487	0.386	0.361	0.456	0.212	0.110	0.139	3.526	4.051	0.246	0.596	0.615	0.398	0.414	0.246	1.466	0.457	0.547	0.231	0.245	0.104	0.055	0.135
2267	chr13	35291567	35294514	+	0	NA	Intergenic	Intergenic	-78218	NR_047036	100874179	Hs.569253	NR_047036	ENSG00000225179	LINC00457	-	long intergenic non-protein coding RNA 457	ncRNA	1.176	0.984	1.052	0.205	1.178	0.603	0.304	0.075		0.554	0.327	0.571	0.243	0.036	0.056	0.302	0.270	0.179	0.537	0.967	0.821	8.374	13.994	0.037	0.170	0.849	0.771	0.695	0.792	0.379	0.217	0.214	0.402	1.751	3.384	0.610	1.264	1.871	0.816	0.035	0.331	0.260	0.525	0.304	0.571		0.483	0.033	0.123
2537	chr14	32684199	32696238	+	0	NA	Intergenic	Intergenic	-17743	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA	1.790	0.918	1.069	0.522	0.493	0.292	0.734	0.968	0.173	0.559	0.219	0.288	0.649	0.098	0.108	0.277	0.178	0.354	1.360	0.794	1.108	1.484	0.296	0.347	0.433	1.075	1.415	0.876	0.715	6.491	5.125	0.239	0.349	0.813	1.111	2.693	6.411	1.561	1.024	0.065	0.139	0.132	1.534	0.734	0.288	0.306	0.321	0.071	2.200
887	chr1	225640936	225670357	+	0	NA	Intergenic	Intergenic	-39089	NM_194442	3930	Hs.435166	NM_002296	ENSG00000143815	LBR	DHCR14B|LMN2R|PHA|TDRD18	lamin B receptor	protein-coding	1.726	nan	2.269	0.878	1.885	0.945	0.768	0.189	0.110	0.796	0.740	1.414	2.000	0.136	0.107	0.732	0.894	0.619	1.045	2.609	nan	2.031	0.725	0.759	0.860	0.413	0.688	2.111	1.877	0.943	1.001	0.269	0.343	1.146	0.874	0.599	1.020	1.932	0.938	0.673	0.290	0.230	0.407	0.768	1.414	0.267	1.317	0.104	0.151
72	chr1	9959571	9973455	+	0	NA	intron (NM_020248, intron 1 of 5)	AluSq2|SINE|Alu	3803	NM_020248	56998	Hs.463759	NM_020248	ENSG00000178585	CTNNBIP1	ICAT	catenin beta interacting protein 1	protein-coding	1.869	nan	2.869	3.983	0.986	0.498	0.729	0.593	0.205	0.292	0.292	0.671	3.179	0.843	0.125	1.293	1.498	1.569	1.818	2.486	2.426	0.628	0.205	1.433	1.495	1.738	nan	nan	7.243	nan	0.803	0.559	0.787	0.508	0.486	1.082	1.851	1.408	0.807	0.598	0.914	0.082	0.216	0.729	0.671	0.293	0.489	0.229	0.325
3371	chr17	34979836	34987683	+	0	NA	Intergenic	Intergenic	25734	NM_024864	79922	Hs.194864	NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding	nan	1.758	1.264	0.358	8.402	4.411	0.621	0.077	0.061	1.964	1.097	4.247	1.030	0.069	0.086	0.490	0.573	0.171	0.333	nan	5.357	3.132	2.256	0.354	0.531	0.259	0.542	2.852	4.310	nan	0.694	0.531	0.697	2.332	1.091	0.331	0.605	2.531	1.779	2.217	2.798	0.839	0.040	0.621	4.247	0.714	3.259	0.263	0.144
7812	chr8	97708435	97806060	+	0	NA	intron (NM_016134, intron 1 of 7)	intron (NM_016134, intron 1 of 7)	99792	NM_016134	10404	Hs.156178	NM_016134	ENSG00000104324	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding	nan	4.308	7.361	0.175	0.328	0.167	0.152	0.337	0.127	0.054	0.069	0.249	0.519	0.060	0.087	0.303	0.162	0.277	nan	0.453	0.534	0.532	0.204	0.237	0.230	0.299	0.488	0.815	0.830	0.460	0.226	0.162	0.274	0.148	0.184	5.427	9.461	0.295	0.320	0.033	0.134	0.059	0.056	0.152	0.249	0.023	0.045	0.041	2.745
1682	chr11	117660144	117671244	+	0	NA	intron (NM_020693, intron 1 of 32)	intron (NM_020693, intron 1 of 32)	2282	NM_020693	57453	Hs.659513	NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding	0.771	1.549	0.587	0.297	0.365	0.154	0.367	0.047		0.114	0.102	0.830	1.056	0.065	0.077	4.006	nan	0.401	0.367	1.422	1.287	1.828	0.496	0.293	0.322	0.608	nan	0.770	0.776	0.484	0.477	4.300	7.926	0.206	0.168	0.278	0.893	0.803	0.662	4.204	0.137	0.067	0.350	0.367	0.830	0.436	0.038	4.159	0.223
2781	chr14	104022713	104037006	+	0	NA	promoter-TSS (NM_001015048)	promoter-TSS (NM_001015048)	565	NR_126431	84334	Hs.598441	NM_032374	ENSG00000256053	APOPT1	APOP|APOP1|C14orf153	apoptogenic 1, mitochondrial	protein-coding	3.198	1.729	2.131	2.338	1.808	0.906	2.951	1.340	0.274	1.430	0.950	1.955	3.639	1.233	0.140	1.596	1.705	1.909	3.104	3.037	3.401	5.651	2.378	2.163	1.921	1.521	2.221	2.605	3.762	2.758	2.495	1.372	2.066	3.313	3.730	1.036	1.543	3.232	1.642	1.539	1.609	0.768	1.206	2.951	1.955	0.332	0.582	0.444	0.303
7672	chr8	50819484	50828401	+	0	NA	promoter-TSS (NM_018967)	promoter-TSS (NM_018967)	-291	NM_001321776	54212	Hs.584914	NM_018967	ENSG00000147481	SNTG1	G1SYN|SYN4	syntrophin gamma 1	protein-coding	0.712	nan	0.809	0.089	0.089	0.109	0.187	0.058	0.094	1.105	0.399		0.969	0.049	0.045	0.443	0.403	0.155	0.147	0.248	0.349	3.475	1.871	0.046	0.086	3.850	nan	0.146	0.148	1.115	1.073	0.062	0.160	3.212	1.965	0.134	0.255	6.000	3.264	0.019	0.079	0.458	0.009	0.187		0.033	4.970	0.033	0.014
8234	chr9	110915689	110931931	+	0	NA	Intergenic	Intergenic	-671809	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel like factor 4	protein-coding	0.664	0.655	nan	0.254	0.654	0.307	0.234	0.226	0.010	0.087	0.090	0.195	0.362	0.026	0.058	1.791	2.178	4.150	2.791	0.326	0.405	0.877	0.293	8.399	8.582	0.080	0.166	0.368	nan	0.430	0.190	3.114	3.641	0.261	0.270	0.103	0.188	nan	0.549	0.027	0.049	0.030	0.062	0.234	0.195	0.114	0.082	3.276	0.031
2257	chr13	31035873	31041766	+	0	NA	promoter-TSS (NM_001313892)	promoter-TSS (NM_001313892)	-355	NM_001313892	3146	Hs.434102	NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding	4.821	3.304	4.311	6.632	2.367	1.228	2.305	3.729	0.409	1.326	0.872	5.696	5.277	3.076	0.071	8.324	9.066	7.381	9.329	10.471	8.491	6.932	2.939	8.956	8.985	2.926	4.404	5.483	8.369	13.507	15.995	4.780	10.368	3.565	2.867	10.661	7.189	2.193	1.136	2.711	2.636	0.890	2.345	2.305	5.696	0.688	2.338	3.477	2.561
3973	chr19	13056421	13068825	+	0	NA	intron (NM_001270363, intron 7 of 7)	L2b|LINE|L2	5445	NM_052850	90480	Hs.515164	NM_052850	ENSG00000179271	GADD45GIP1	CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1	GADD45G interacting protein 1	protein-coding	4.148	1.955	7.228	2.173	2.757	1.320	1.748	1.134	0.339	1.428	0.921	2.587	1.693	1.768	0.103	2.473	2.647	2.554	3.684	3.955	4.329	5.599	2.339	5.605	5.332	2.649	4.000	3.646	4.832	6.835	6.131	1.412	2.319	2.704	3.717	4.509	6.205	3.465	1.512	3.740	1.076	1.012	0.788	1.748	2.587	1.417	1.591	0.607	2.898
6454	chr5	134811729	134849557	+	0	NA	Intergenic	Intergenic	40996	NM_006161	4762	Hs.248149	NM_006161	ENSG00000181965	NEUROG1	AKA|Math4C|NEUROD3|bHLHa6|ngn1	neurogenin 1	protein-coding	2.488	1.016	nan	0.123	0.690	0.331	1.754	0.081	0.093	0.096	0.077	2.726	1.320	0.057	0.088	0.284	0.279	0.351	0.979	3.183	3.419	2.246	0.549	0.176	0.248	1.805	2.283	0.397	0.379	2.772	3.005	0.168	0.359	1.080	0.680	1.162	3.820	0.508	0.368	0.340	2.597	0.282	1.245	1.754	2.726	0.961	0.043	0.136	1.903
2444	chr13	110772464	110792225	+	0	NA	Intergenic	Intergenic	76712	NR_126387	104355146	Hs.508690	NR_126387	ENSG00000231428	LINC00396	-	long intergenic non-protein coding RNA 396	ncRNA	0.612	nan	1.014	2.472	0.661	0.413	0.455	0.557	0.086	0.681	0.191	2.000	8.493	0.131	0.074	0.535	0.324	0.487	1.035	2.818	2.248	10.212	4.304	0.314	0.379	0.035	0.073	1.630	2.483	0.465	0.382	0.414	0.653	0.112	0.185	0.179	0.262	0.829	0.575	2.445	2.070	0.019	2.252	0.455	2.000	0.010	2.119	0.120	0.125
725	chr1	185372661	185383145	+	0	NA	Intergenic	Intergenic	-73732	NR_038424	100288079	Hs.131220	NR_038424	ENSG00000261024	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo	nan	nan	0.894	0.150	0.318	0.122	0.438	0.307	0.218	0.136	0.133	0.194	0.740	0.675	0.112	1.043	0.974	3.754	9.489	0.432	nan	0.638	0.242	nan	0.491	0.521	0.658	0.252	0.349	0.367	0.191	1.235	1.856	0.079	0.076	0.268	nan	0.520	0.628	0.059	0.165	0.009	0.091	0.438	0.194	0.046	0.055	0.584	0.070
3921	chr18	77700694	77736408	+	0	NA	Intergenic	Intergenic	-6031	NM_001136180	440498	Hs.191582	NM_001136180	ENSG00000226742	HSBP1L1	-	heat shock factor binding protein 1 like 1	protein-coding	nan	nan	1.210	0.192	0.844	0.360	0.866	0.210	0.077	0.353	0.255	0.905	1.590	0.599	0.089	2.543	3.126	2.219	2.369	1.527	nan	1.840	0.713	1.451	1.348	0.386	0.601	0.940	nan	0.571	0.591	1.191	2.304	0.598	0.577	0.744	1.329	0.796	0.495	0.554	0.710	0.121	0.413	0.866	0.905	0.093	0.265	2.025	0.481
4088	chr19	43881255	43901559	+	0	NA	Intergenic	Intergenic	-1356	NM_031451	83639	Hs.97978	NM_031451	ENSG00000131126	TEX101	CT131|GTPR867|NYD-SP8|PRO1884|SGRG|SPATA44|TES101RP	testis expressed 101	protein-coding	0.661	1.536	1.514	0.749	0.189	0.158	0.152	0.092	0.095	0.737	0.266	1.191	0.246	0.066	0.083	1.487	1.251	1.340	1.089	0.242	0.325	5.082	1.125	0.932	0.962	0.220	0.357	0.171	0.190	0.203	0.056	0.587	0.726	2.036	1.954	0.138	0.265	3.584	1.963	0.045	0.100	0.593	0.014	0.152	1.191	0.066	0.499	0.116	0.024
4290	chr2	38292255	38345094	+	0	NA	Intergenic	Intergenic	-15351	NM_000104	1545	Hs.154654	NM_000104	ENSG00000138061	CYP1B1	CP1B|CYPIB1|GLC3A|P4501B1	cytochrome P450 family 1 subfamily B member 1	protein-coding	1.765	nan	nan	0.292	0.206	0.103	0.830	1.634	0.216	0.145	0.146	0.104	0.888	0.416	0.116	0.295	0.161	2.882	8.370	0.705	0.569	0.163	0.082	1.328	nan	0.842	1.038	1.271	1.674	nan	1.163	0.188	0.239	0.038	0.055	3.164	6.347	0.271	0.324	0.321	0.194	0.016	0.078	0.830	0.104	0.289	0.152	0.054	2.839
5754	chr3	186499541	186505160	+	0	NA	promoter-TSS (NR_002587)	promoter-TSS (NR_002587)	-235	NR_002587	619567		NR_002587	ENSG00000238942	SNORD2	R39B|SNR39B	small nucleolar RNA, C/D box 2	snoRNA	6.616	4.828	3.496	6.767	10.892	6.019	3.721	3.236	0.382	4.450	2.043	5.908	16.029	3.888	0.121	7.168	7.421	7.851	10.548	11.774	11.400	13.563	9.370	13.614	15.174	5.352	6.701	10.297	13.560	15.896	15.378	7.173	11.843	5.733	5.859	12.530	8.436	4.746	2.781	4.057	4.489	1.120	3.189	3.721	5.908	1.364	2.169	2.632	3.466
5348	chr3	29318623	29340092	+	0	NA	intron (NM_001003792, intron 1 of 13)	intron (NM_001003792, intron 1 of 13)	6554	NM_001177711	27303	Hs.221436	NM_014483	ENSG00000144642	RBMS3	-	RNA binding motif single stranded interacting protein 3	protein-coding	0.547	0.859	0.501	0.105	0.381	0.179	0.069	1.876	0.120	0.058	0.069	0.145	0.197	5.870	0.156	0.192	0.137	0.738	2.687	0.233	0.333	0.088	0.067	0.103	0.100	0.436	0.678	0.253	0.232	nan	2.211	0.126	0.191	0.199	0.249	0.199	0.387	0.288	0.320	0.268	0.036	0.054	0.063	0.069	0.145	0.104	0.382	0.046	0.087
3252	chr17	5671173	5675896	+	0	NA	Intergenic	Intergenic	-2020	NR_040000	339166	Hs.736088	NR_040000	ENSG00000179314	LOC339166	-	uncharacterized LOC339166	ncRNA	1.305	2.232	0.799	0.018	1.186	0.610	3.206	0.063	0.068	0.531	0.295	6.342	1.652	0.068	0.096	2.146	4.287	0.177	0.162	2.197	1.764	14.061	7.484	0.049	0.069	1.364	2.653	0.088	0.164	0.499	0.394	0.120	0.380	2.707	1.383	0.138	0.422	0.125	0.251	1.809	0.243	0.425	0.837	3.206	6.342	0.349	0.043	0.105	0.080
4048	chr19	38877510	38880739	+	0	NA	promoter-TSS (NM_152657)	promoter-TSS (NM_152657)	-456	NM_152657	199720	Hs.447948	NM_152657	ENSG00000179168	GGN	-	gametogenetin	protein-coding	1.340	2.176	1.568	2.751	3.365	1.829	1.599	0.838	0.099	0.676	0.231	0.814	24.789	5.812	0.194	0.506	0.665	1.629	2.130	4.294	2.605	5.133	2.217	1.024	1.308	1.230	1.308	2.994	5.536	nan	0.683	0.566	0.446	0.571	0.643	0.497	1.402	1.688	0.731	1.646	4.400	0.321	0.388	1.599	0.814	0.490	3.040	0.123	0.304
5429	chr3	89521352	89534785	+	0	NA	intron (NM_005233, intron 16 of 16)	MLT1C|LTR|ERVL-MaLR	371394	NM_182644	2042	Hs.123642	NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding	nan	0.619	0.627	0.053	0.170	0.048	0.020	0.045	0.032	0.058	0.080	0.107	0.161	0.056	0.098	0.151	0.088	6.855	2.308	0.167	0.196	0.591	0.203	0.219	0.193	0.482	0.661	0.107	0.104	0.336	0.143	0.065	0.074	0.038	0.041	0.184	0.317	0.399	0.442	0.013	0.019	0.007	0.006	0.020	0.107		0.030	0.015	0.037
4183	chr2	3423640	3440947	+	0	NA	intron (NM_016030, intron 5 of 11)	intron (NM_016030, intron 5 of 11)	48847	NM_016030	51112	Hs.252713	NM_016030	ENSG00000171853	TRAPPC12	CGI-87|TTC-15|TTC15	trafficking protein particle complex 12	protein-coding	0.873	0.542	1.076	0.489	0.572	0.324	0.348	0.126	0.037	0.350	0.162	0.815	0.617	0.101	0.113	0.397	0.546	0.371	0.405	1.294	1.067	0.805	0.224	0.165	0.198	0.468	0.774	5.299	4.146	0.422	0.254	0.229	0.376	0.082	0.076	0.705	1.389	1.820	0.989	0.272	4.458	0.010	0.257	0.348	0.815	0.442	3.639	0.091	0.344
4011	chr19	29797962	29820749	+	0	NA	intron (NR_040029, intron 9 of 9)	intron (NR_040029, intron 9 of 9)	-105219	NM_006003	7386	Hs.743307	NM_006003	ENSG00000169021	UQCRFS1	RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	nan	0.796	0.547	0.078	1.709	0.874	3.240	0.092	0.064	0.104	0.110	1.277	6.374	0.033	0.071	1.607	2.174	0.235	0.182	1.992	1.967	0.156	0.091	0.085	0.088	0.210	0.324	0.113	0.158	0.596	0.507	0.480	0.890	0.101	0.060	0.100	0.173	0.707	0.651	1.315	2.522	0.021	0.424	3.240	1.277	1.400	0.036	0.256	0.050
1326	chr11	16759180	16761495	+	0	NA	exon (NM_014267, exon 1 of 5)	exon (NM_014267, exon 1 of 5)	189	NM_014267	10944	Hs.368226	NM_014267	ENSG00000110696	C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding	7.658	6.899	7.176	10.880	10.357	5.618	7.548	3.806	0.230	4.032	1.565	13.514	19.301	4.861	0.083	18.384	15.381	17.600	22.950	23.628	23.111	15.154	14.169	31.847	35.487	11.036	12.265	11.882	22.311	18.162	18.435	12.295	15.465	12.034	15.025	12.524	8.167	8.119	5.174	6.041	7.247	1.467	2.611	7.548	13.514	1.345	1.791	3.688	2.110
6402	chr5	108783505	108792531	+	0	NA	Intergenic	Intergenic	-42343	NM_014819	9867	Hs.483036	NM_014819	ENSG00000198961	PJA2	Neurodap1|RNF131	praja ring finger ubiquitin ligase 2	protein-coding	0.750	1.052	0.591	0.057	0.231	0.107	0.125	0.273	0.089	0.138	0.047	0.040	0.313	0.085	0.126	0.276	0.226	0.654	1.134	0.236	0.236	0.147	0.074	0.143	0.123	7.964	7.746	0.473	0.393	0.393	0.168	0.088	0.148	0.488	1.196	0.218	0.274	0.495	0.368	0.080	0.149	0.116	0.042	0.125	0.040	0.033	0.369	0.045	0.114
3714	chr18	30379706	30385800	+	0	NA	Intergenic	Intergenic	-29779	NM_020805	57565	Hs.446164	NM_020805	ENSG00000197705	KLHL14	-	kelch like family member 14	protein-coding	nan	1.032	1.389	0.103	0.346	0.079	0.148	0.061	0.027	0.156	0.054	0.215	0.352	0.018	0.148	2.705	2.978	3.332	1.578	0.629	0.634	1.073	0.610	0.095	0.075	0.176	0.266	nan	1.280	0.247	0.149	0.675	1.468	8.982	14.025	0.276	0.512	0.787	0.835	0.099	0.087	4.537	0.738	0.148	0.215	0.112	0.050	1.412	0.078
2637	chr14	61222442	61235863	+	0	NA	intron (NM_002431, intron 1 of 7)	AluSx1|SINE|Alu	27693	NM_002431	4331	Hs.509523	NM_002431	ENSG00000020426	MNAT1	CAP35|MAT1|RNF66|TFB3	MNAT1, CDK activating kinase assembly factor	protein-coding	nan	nan	0.988	3.459	5.843	2.856	1.256	0.749	0.132	0.433	0.233	3.714	0.645	0.089	0.134	0.324	0.252	0.549	0.804	3.523	4.488	4.283	2.514	nan	0.675	0.461	0.729	2.752	nan	0.765	0.332	0.239	0.414	1.622	1.605	0.195	0.444	0.501	0.368	0.955	1.039	0.135	2.047	1.256	3.714	0.088	0.015	0.077	0.119
6234	chr5	36239410	36243785	+	0	NA	promoter-TSS (NM_001287340)	promoter-TSS (NM_001287340)	-104	NM_001287340	133686	Hs.81907	NM_153013	ENSG00000152620	NADK2	C5orf33|DECRD|MNADK|NADKD1	NAD kinase 2, mitochondrial	protein-coding	4.025	3.395	14.955	3.195	1.171	1.063	2.142	4.187	0.781	2.199	1.159	2.135	6.141	3.575	0.223	4.747	6.071	5.648	6.726	4.019	2.637	6.176	1.913	7.932	8.608	5.105	7.581	3.832	4.561	5.579	7.325	5.739	9.681	2.691	2.165	2.818	2.424	2.126	1.672	1.032	2.060	0.216	1.633	2.142	2.135	0.888	4.846	2.861	0.676
6509	chr5	149010640	149014335	+	0	NA	3' UTR (NM_001001669, exon 13 of 13)	3' UTR (NM_001001669, exon 13 of 13)	51352	NM_001001669	389337	Hs.256206	NM_001001669	ENSG00000183111	ARHGEF37	-	Rho guanine nucleotide exchange factor 37	protein-coding	nan	1.981	0.678	0.316	0.244	0.130	0.167	0.062	0.132	0.093	0.023	0.097	0.990	0.089	0.086	1.442	1.512	13.869	9.828	0.209	0.224	5.289	0.593	1.998	2.321	0.244	0.415	2.328	3.146	0.460	0.155	1.049	1.354	0.744	0.958	0.235	0.241	1.305	0.644		0.362	0.453	0.086	0.167	0.097		0.443	0.508	0.067
589	chr1	156297464	156315912	+	0	NA	promoter-TSS (NM_144627)	promoter-TSS (NM_144627)	-417	NM_144627	128229	Hs.534539	NM_144627	ENSG00000163467	TSACC	C1orf182|SIP|SSTK-IP	TSSK6 activating cochaperone	protein-coding	nan	nan	1.606	1.017	1.175	0.582	1.073	0.616	0.209	0.943	0.439	0.748	5.377	0.843	0.171	1.475	1.290	1.488	2.090	1.650	nan	2.230	0.774	1.316	1.394	1.438	1.912	2.292	2.474	1.948	1.824	1.468	2.421	1.065	1.351	1.842	5.098	1.211	0.568	0.487	1.147	0.301	0.345	1.073	0.748	0.357	0.573	0.783	1.329
150	chr1	26250789	26282997	+	0	NA	Intergenic	Intergenic	-33525	NM_203399	3925	Hs.209983	NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding	2.095	1.034	nan	0.391	0.375	0.149	0.527	0.095	0.100	0.263	0.177	0.245	0.456	0.106	0.101	0.472	0.536	0.234	0.278	0.995	1.029	2.258	0.647	0.412	0.399	1.450	2.213	0.537	0.625	2.028	1.855	0.333	0.402	0.443	0.418	1.300	4.246	1.245	0.768	0.215	0.113	0.073	0.222	0.527	0.245	0.190	0.138	0.110	0.783
7900	chr8	120924269	120933755	+	0	NA	intron (NM_001283012, intron 1 of 6)	LTR64|LTR|ERV1	43117	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR interacting protein	protein-coding	nan	nan	nan	0.497	1.465	0.678	0.832	0.418	0.068	0.763	0.428	2.404	nan	0.091	0.092	0.360	0.222	0.202	0.309	1.503	1.700	5.561	2.943	nan	nan	0.228	0.353	1.180	0.587	0.543	0.325	0.371	0.421	2.614	3.327	1.889	4.537	1.451	0.970	1.058	2.416	0.648	0.042	0.832	2.404	0.021	1.970	0.063	2.399
7000	chr6	138540009	138565528	+	0	NA	intron (NM_020340, intron 5 of 33)	intron (NM_020340, intron 5 of 33)	-13141	NM_021635	59351	Hs.302016	NM_021635	ENSG00000254440	PBOV1	UC28|UROC28|dJ171N11.2	prostate and breast cancer overexpressed 1	protein-coding	1.153	1.390	1.959	0.826	1.038	0.509	0.558	0.086	0.057	0.774	0.347	0.700	1.106	0.047	0.101	0.392	0.241	0.319	0.739	0.851	0.829	6.917	3.168	0.358	0.380	0.334	0.567	2.869	3.084	0.546	0.270	0.420	0.660	1.816	2.862	0.242	nan	1.882	0.936	2.749	2.283	0.544	0.189	0.558	0.700	0.332	0.556	0.564	0.062
245	chr1	40465962	40473313	+	0	NA	Intergenic	AluSq|SINE|Alu	-36618	NM_001105530	10487	Hs.370581	NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	adenylate cyclase associated protein 1	protein-coding	11.105	1.067	nan	1.125	0.123	0.112	5.089	0.154	0.114	0.170	0.134	0.309	0.286	0.015	0.136	0.275	0.324	0.227	0.257	0.348	0.512	0.268	0.174	0.269	0.219	0.846	nan	nan	0.921	0.646	0.601	0.186	nan	0.070	0.042	1.769	7.294	0.817	0.731	0.093	0.143	0.027	8.399	5.089	0.309	0.212	0.056	0.027	2.057
2511	chr14	29547319	29578596	+	0	NA	Intergenic	Intergenic	-307964	NR_135255	105370424	Hs.375809	NR_135255	ENSG00000257056	LOC105370424	-	uncharacterized LOC105370424	ncRNA	1.427	1.069	0.893	0.283	0.493	0.323	1.157	0.233	0.113	0.231	0.226	0.517	0.487	0.028	0.088	0.228	0.110	0.147	0.185	0.457	0.641	1.731	0.583	0.133	0.135	4.345	4.816	0.433	0.478	0.908	0.602	0.117	0.146	5.738	6.596	0.904	2.353	0.679	0.542	0.055	0.183	1.575	0.389	1.157	0.517	0.115	0.100	0.035	0.429
7203	chr7	24266355	24278450	+	0	NA	Intergenic	L1MD2|LINE|L1	-51405	NM_000905	4852	Hs.1832	NM_000905	ENSG00000122585	NPY	PYY4	neuropeptide Y	protein-coding	0.879	0.845	0.812	0.142	0.287	0.119	0.384	0.086	0.053	0.286	0.163	0.170	0.302	0.054	0.157	0.364	0.211	0.411	nan	0.388	0.582	7.232	2.624	0.205	0.219	0.303	0.429	0.441	0.389	0.380	0.311	0.138	0.168	0.238	0.195	0.122	nan	0.538	0.559	0.187	0.179	0.015	0.127	0.384	0.170	0.075	0.075	0.032	0.113
2546	chr14	35007111	35031719	+	0	NA	Intergenic	AluSx|SINE|Alu	-10472	NM_018453	55837	Hs.433269	NM_018453	ENSG00000129518	EAPP	BM036|C14orf11	E2F associated phosphoprotein	protein-coding	3.949	2.198	2.282	3.011	2.027	0.989	2.440	2.572	0.794	0.745	0.567	2.130	6.316	1.625	0.140	2.525	2.691	2.784	4.311	4.846	4.889	3.069	2.906	7.720	8.413	2.609	2.882	3.224	4.723	5.328	5.081	3.066	3.782	2.374	2.833	2.407	2.454	1.985	1.066	3.245	3.912	0.866	2.355	2.440	2.130	0.808	1.570	1.162	0.619
5943	chr4	77608449	77627448	+	0	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	121244	NR_039655	100616254		NR_039655	ENSG00000283682	MIR548AH	-	microRNA 548ah	ncRNA	1.397	1.009	1.343	1.395	1.274	0.692	0.693	0.447	0.136	0.805	0.397	1.761	2.634	0.880	0.075	1.227	1.246	1.930	5.027	2.102	1.962	3.109	1.658	0.656	0.608	0.241	0.331	2.191	4.531	0.485	0.300	0.329	0.684	0.560	0.535	0.267	0.599	1.148	0.759	0.191	1.774	0.075	0.410	0.693	1.761	0.036	1.041	0.142	0.111
8423	chrX	153596162	153609362	+	0	NA	intron (NM_001110556, intron 1 of 47)	CpG	244	NM_001110556	2316	Hs.195464	NM_001456	ENSG00000196924	FLNA	ABP-280|ABPX|CSBS|CVD1|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD	filamin A	protein-coding	4.269	3.194	6.054	2.141	4.074	2.123	4.899	1.442	0.196	0.630	0.422	2.259	6.332	1.451	0.039	2.655	3.348	3.050	5.181	5.365	4.106	4.195	1.531	8.096	8.059	1.948	2.711	4.068	6.289	2.868	3.087	2.293	4.449	1.996	1.879	3.139	4.088	1.504	0.867	2.587	2.295	0.484	2.164	4.899	2.259	0.787	1.415	1.212	1.344
5498	chr3	118654881	118671705	+	0	NA	intron (NR_046230, intron 1 of 3)	intron (NR_046230, intron 1 of 3)	1370	NR_046230	100506765	Hs.660823	NR_046230	ENSG00000239877	IGSF11-AS1	-	IGSF11 antisense RNA 1	ncRNA	1.121	nan	0.954	0.094	0.322	0.076	0.253	0.106	0.087	0.065	0.110	0.078	0.138	0.038	0.076	0.338	0.268	0.203	0.335	0.348	nan	0.216	0.150	0.259	0.269	nan	2.159	0.235	0.210	3.328	2.827	0.090	0.143	0.124	0.084	1.710	5.323	0.406	0.533	0.036	0.145	0.017	0.553	0.253	0.078	0.121	0.012	0.029	0.638
6946	chr6	124574242	124579316	+	0	NA	intron (NM_001300737, intron 2 of 7)	intron (NM_001300737, intron 2 of 7)	-27372	NM_001300740	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding	0.810	0.908	0.730	0.152	0.416	0.119	0.168	0.086	0.157	0.186	0.309	0.410	0.311	0.004	0.127	0.374	0.293	0.338	0.213	0.498	0.555	13.826	4.619	0.417	0.418	0.811	0.920	0.494	0.333	0.697	0.231	0.079	0.215	1.181	1.110	0.312	0.416	0.316	0.337	0.144	0.229	0.340	0.032	0.168	0.410		0.139	0.078	
4994	chr20	49339638	49367912	+	0	NA	intron (NM_032521, intron 1 of 2)	intron (NM_032521, intron 1 of 2)	5694	NM_032521	84612	Hs.589848	NM_032521	ENSG00000124171	PARD6B	PAR6B	par-6 family cell polarity regulator beta	protein-coding	nan	nan	1.372	0.938	0.690	0.432	0.745	0.363	0.227	0.288	0.216	0.583	1.528	0.698	0.141	2.324	3.027	1.352	2.412	1.144	1.122	nan	0.469	1.388	1.365	0.814	1.316	1.831	2.409	nan	1.489	1.434	3.011	0.274	0.250	1.686	4.809	0.908	0.649	0.469	0.663	0.068	0.528	0.745	0.583	0.177	0.330	1.677	1.581
2666	chr14	70232757	70235598	+	0	NA	non-coding (NR_029378, exon 1 of 1)	non-coding (NR_029378, exon 1 of 1)	253	NR_029378	100289511	Hs.729250	NR_029378		LOC100289511	-	uncharacterized LOC100289511	ncRNA	12.484	6.013	8.227	11.239	9.675	4.119	8.445	5.293	0.799	2.328	1.395	6.794	16.683	6.603	0.247	7.437	6.393	11.361	15.349	15.350	14.557	9.581	8.832	24.422	25.738	5.853	6.943	10.993	16.980	20.185	19.123	7.045	10.474	8.791	10.309	8.919	8.073	5.429	nan	7.009	6.501	1.196	4.920	8.445	6.794	2.292	2.488	2.555	2.386
3012	chr16	632299	647735	+	0	NA	promoter-TSS (NM_001172665)	promoter-TSS (NM_001172665)	-60	NM_001172666	57799	Hs.459630	NM_021168	ENSG00000197562	RAB40C	RARL|RASL8C	RAB40C, member RAS oncogene family	protein-coding	2.750	nan	3.519	3.569	2.197	1.185	1.558	0.833	0.177	1.512	0.568	2.321	6.514	1.136	0.073	2.411	3.030	1.091	1.692	2.455	2.406	nan	1.673	4.505	4.399	1.114	nan	4.371	6.752	2.093	2.344	1.373	2.227	3.154	3.021	1.183	1.607	3.440	1.717	4.691	6.562	0.611	0.488	1.558	2.321	1.190	1.394	1.217	0.649
1099	chr10	35921614	35933313	+	0	NA	3' UTR (NM_031866, exon 1 of 1)	3' UTR (NM_031866, exon 1 of 1)	2717	NR_039831	100616500		NR_039831	ENSG00000177283	MIR4683	-	microRNA 4683	ncRNA	1.867	3.411	4.481	0.497	2.501	1.410	1.872	0.167	0.152	0.338	0.086	0.130	7.213	2.168	0.084	0.203	0.147	1.043	nan	2.596	1.869	0.485	0.087	4.252	4.109	1.493	2.178	0.223	0.276	1.671	2.688	0.074	0.091	0.598	0.509	1.016	2.109	1.243	0.641	0.338	0.052	0.170	0.630	1.872	0.130	0.463	0.043		0.453
3599	chr17	78226290	78238221	+	0	NA	Intergenic	LTR7|LTR|ERV1	-2405	NM_001256071	57674	Hs.195642	NM_020914	ENSG00000173821	RNF213	ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57	ring finger protein 213	protein-coding	2.465	3.206	2.377	1.981	2.046	1.071	2.268	3.108	0.567	0.936	0.465	3.223	3.205	2.124	0.114	1.542	2.327	1.638	3.475	2.603	2.423	3.186	0.786	3.519	3.653	nan	1.733	4.755	8.612	3.430	3.088	1.611	2.166	1.665	3.111	1.901	3.939	nan	0.817	0.918	1.930	0.399	0.431	2.268	3.223	0.823	8.884	0.858	1.040
5311	chr22	49624625	49633560	+	0	NA	Intergenic	Intergenic	308022	NR_037440	100500882		NR_037440	ENSG00000264139	MIR3667	-	microRNA 3667	ncRNA	0.550	0.320	nan	0.039	6.699	3.220	0.028	0.041	0.018	0.946	0.294	1.217	2.406	0.024	0.087	0.197	0.168	0.053	0.093	0.903	0.926	4.501	1.894	0.063	0.075	0.117	0.178	5.632	5.051	0.410	0.349	0.862	0.481	1.215	1.815	0.089	0.078	2.528	1.324	0.988	0.923	0.424	0.017	0.028	1.217	0.314	2.230	0.097	
5083	chr21	28269896	28278187	+	0	NA	Intergenic	Intergenic	-52239	NR_039916	100616243		NR_039916	ENSG00000266133	MIR4759	-	microRNA 4759	ncRNA	0.736	0.735	0.955	0.064	0.242	0.096	0.077	0.117	0.193		0.059	0.044	0.280	0.013	0.063	0.512	0.397	0.189	0.284	0.228	0.222	0.072	0.065	0.183	0.205	0.510	0.730	0.181	0.204	0.538	0.200	0.057	0.168	0.048	0.083	0.141	nan	7.248	3.229	0.011	0.043	0.012	0.136	0.077	0.044		0.613	0.036	0.031
4962	chr20	44757160	44771708	+	0	NA	Intergenic	Intergenic	17541	NM_001322422	958	Hs.472860	NM_001250	ENSG00000101017	CD40	Bp50|CDW40|TNFRSF5|p50	CD40 molecule	protein-coding	nan	nan	0.818	0.615	0.633	0.363	0.633	0.122	0.044	0.311	0.206	0.238	7.474	0.127	0.088	1.030	1.670	0.301	0.273	2.743	3.035	nan	0.284	0.319	0.321	0.611	0.943	2.258	2.664	nan	1.036	0.695	0.941	0.320	0.373	0.963	2.840	0.775	0.491	5.058	1.311	0.116	0.076	0.633	0.238	0.257	0.258	0.414	1.093
34	chr1	3235019	3286010	+	0	NA	intron (NM_199454, intron 3 of 16)	L1MEf|LINE|L1	-110633	NM_014448	27237	Hs.87435	NM_014448	ENSG00000130762	ARHGEF16	GEF16|NBR	Rho guanine nucleotide exchange factor 16	protein-coding	1.311	nan	1.041	0.368	1.028	0.507	0.632	0.076	0.082	0.065	0.047	0.028	1.415	0.070	0.091	0.164	0.098	0.108	0.157	0.360	0.373	0.105	0.043	0.164	0.192	0.141	nan	nan	0.163	nan	0.151	0.207	0.145	0.082	0.080	0.108	0.119	0.195	0.265	6.609	0.517	0.017	0.006	0.632	0.028	0.621	0.267	0.015	0.022
2656	chr14	66387172	66411155	+	0	NA	Intergenic	AluSz|SINE|Alu	461343	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA	nan	nan	0.735	0.236	2.588	1.364	0.561	0.141	0.148	0.145	0.113	0.360	0.746	0.051	0.109	0.467	0.465	0.528	0.490	0.749	0.806	1.795	0.685	nan	0.486	0.243	0.456	0.885	nan	0.630	0.245	0.182	0.358	0.284	0.265	0.132	0.213	3.790	1.953	0.292	0.404	0.071	0.172	0.561	0.360	0.085	0.092	0.069	0.071
1410	chr11	47125073	47160584	+	0	NA	intron (NM_001003678, intron 3 of 8)	Tigger15a|DNA|TcMar-Tigger	55848	NM_001242832	84364	Hs.436204	NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding	nan	1.925	1.054	1.281	1.744	0.963	0.524	0.139	0.104	0.195	0.224	1.254	0.947	0.073	0.125	0.666	0.744	0.690	0.687	1.036	1.057	4.060	1.179	0.373	0.416	0.614	0.901	1.272	1.560	0.298	0.190	1.044	1.595	1.069	1.119	0.371	nan	1.682	0.960	1.122	2.715	0.507	0.101	0.524	1.254	0.036	0.371	2.000	0.269
2613	chr14	57728653	57743438	+	0	NA	promoter-TSS (NM_006544)	promoter-TSS (NM_006544)	-428	NM_006544	10640	Hs.743987	NM_006544	ENSG00000070367	EXOC5	HSEC10|PRO1912|SEC10|SEC10L1|SEC10P	exocyst complex component 5	protein-coding	nan	nan	3.393	2.349	1.743	1.010	1.475	1.067	0.152	0.600	0.389	1.618	2.971	1.057	0.166	1.877	1.699	2.671	3.687	3.466	2.857	2.143	0.963	6.027	6.312	1.608	1.882	2.342	4.041	4.578	4.246	0.935	1.754	2.599	3.308	8.386	8.844	nan	0.966	1.510	1.648	0.378	1.448	1.475	1.618	0.551	0.934	0.503	2.946
3056	chr16	14164066	14172339	+	0	NA	intron (NM_001308142, intron 1 of 16)	intron (NM_001308142, intron 1 of 16)	3031	NM_001308142	57496	Hs.49143	NM_014048	ENSG00000186260	MKL2	MRTF-B|MRTFB|NPD001	MKL1/myocardin like 2	protein-coding	2.084	1.550	nan	2.978	2.188	1.412	1.561	1.024	0.201	0.930	0.335	2.871	5.391	0.838	0.096	1.999	3.005	1.292	1.788	2.735	3.181	5.274	2.436	14.020	14.362	1.448	1.998	4.589	6.984	nan	2.424	2.400	4.519	2.528	2.267	1.939	1.906	1.851	1.045	1.293	0.984	0.391	0.761	1.561	2.871	0.445	1.056	1.436	0.427
2693	chr14	78328287	78352221	+	0	NA	intron (NM_020421, intron 4 of 10)	intron (NM_020421, intron 4 of 10)	73828	NM_020421	57143	Hs.413208	NM_020421	ENSG00000063761	ADCK1	-	aarF domain containing kinase 1	protein-coding	2.430	0.749	1.053	0.129	0.450	0.234	1.126	0.125	0.094	0.168	0.157	0.145	0.904	0.063	0.076	0.307	0.269	0.259	0.335	0.549	0.705	0.907	0.262	0.420	0.496	0.424	0.683	0.712	nan	0.702	0.566	0.185	0.287	2.612	2.445	0.495	0.716	2.812	nan	3.406	0.390	0.608	0.103	1.126	0.145	0.492	0.051	0.033	0.334
4449	chr2	100119871	100129211	+	0	NA	Intergenic	MER110-int|LTR|ERV1	-18023	NR_135650	51455	Hs.443077	NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1, DNA directed polymerase	protein-coding	1.085	nan	2.253	2.027	3.751	2.018	0.232	0.118	0.120	0.808	0.660	4.754	2.077	0.023	0.048	0.327	0.212	0.187	0.360	6.863	8.488	2.945	0.684	0.343	0.333	0.728	1.261	5.400	5.301	0.687	0.359	0.202	0.304	1.507	2.100	0.219	0.313	1.791	0.830	2.981	3.300	0.904	0.051	0.232	4.754	0.162	1.870	0.074	0.105
1434	chr11	60925673	60935905	+	0	NA	Intergenic	Intergenic	-1873	NM_017966	55048	Hs.523715	NM_017966	ENSG00000167987	VPS37C	-	VPS37C, ESCRT-I subunit	protein-coding	nan	4.201	2.209	6.188	2.686	1.363	1.198	1.371	0.172	1.164	0.498	2.814	6.547	2.599	0.183	2.304	2.733	1.708	2.427	3.087	2.617	5.656	3.120	3.740	3.687	1.853	2.432	8.754	11.658	2.507	2.764	1.367	2.235	2.915	3.173	2.218	4.355	2.117	1.182	2.354	6.693	0.598	0.495	1.198	2.814	0.821	2.383	1.025	1.049
1547	chr11	79635958	79661914	+	0	NA	Intergenic	Intergenic	-497241	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4	teneurin transmembrane protein 4	protein-coding	nan	0.740	0.568	0.071	0.194	0.099	0.242	0.043	0.054	0.526	0.335	1.365	0.430	0.042	0.106	0.572	0.370	0.173	0.240	0.515	0.744	0.126	0.060	19.696	20.693	0.226	0.290	0.692	0.887	0.347	0.132	3.668	5.688	0.736	0.466	0.126	0.198	0.528	0.510	0.032	1.590	0.066	0.215	0.242	1.365	0.028	0.015	3.074	0.053
2471	chr13	114536972	114586343	+	0	NA	intron (NM_000820, intron 2 of 14)	(TG)n|Simple_repeat|Simple_repeat	5419	NM_000820	2621	Hs.646346	NM_000820	ENSG00000183087	GAS6	AXLLG|AXSF	growth arrest specific 6	protein-coding	1.226	nan	0.847	0.502	0.207	0.104	1.246	0.388	0.144	0.219	0.175	0.359	2.882	0.145	0.071	1.108	1.406	0.251	0.527	1.054	1.067	1.108	0.380	0.231	0.221	0.321	0.461	1.330	1.949	0.804	0.720	0.873	1.280	0.389	0.366	0.187	0.224	0.164	0.145	5.400	1.288	0.049	0.061	1.246	0.359	0.649	0.340	0.597	0.055
3457	chr17	49229760	49236614	+	0	NA	intron (NM_001018136, intron 2 of 7)	intron (NM_001018136, intron 2 of 7)	2267	NM_000269	4830	Hs.463456	NM_000269	ENSG00000239672	NME1	AWD|GAAD|NB|NBS|NDKA|NDPK-A|NDPKA|NM23|NM23-H1	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	3.885	1.644	nan	1.814	1.861	1.066	1.394	1.193	0.117	1.227	0.893	1.828	2.481	2.479	0.132	3.101	3.067	2.131	2.873	4.063	nan	3.885	1.403	7.046	7.411	2.621	3.806	5.154	nan	9.415	10.724	2.121	4.003	3.707	3.370	4.056	6.954	2.661	1.769	0.826	1.285	0.415	1.191	1.394	1.828	1.246	1.356	1.027	1.936
7531	chr7	148578618	148583032	+	0	NA	promoter-TSS (NM_001203249)	promoter-TSS (NM_001203249)	-224	NM_001203249	2146	Hs.444082	NM_004456	ENSG00000106462	EZH2	ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	9.188	3.640	6.562	6.946	7.420	3.911	7.441	3.150	0.809	4.202	2.014	11.515	11.514	8.331	0.273	7.605	8.745	8.222	10.434	12.047	9.855	9.930	5.270	18.910	19.699	4.448	6.310	6.053	11.235	8.529	10.305	7.251	13.371	13.008	14.398	11.540	8.325	4.714	nan	5.216	7.183	3.581	3.806	7.441	11.515	1.929	5.529	3.121	2.140
1045	chr10	15181906	15210742	+	0	NA	TTS (NR_036506)	TTS (NR_036506)	1022	NR_036506	100192204	Hs.714691	NR_036506	ENSG00000206448	PPIAP30	-	peptidylprolyl isomerase A pseudogene 30	pseudo	nan	0.712	0.926	0.579	0.482	0.176	0.139	0.455	0.162	0.119	0.098	0.271	0.577	0.184	0.091	0.808	0.772	0.668	0.919	0.552	0.486	4.997	1.229	0.293	0.352	0.662	1.038	0.423	0.605	0.844	0.920	0.173	0.340	0.263	0.301	0.434	0.674	0.590	0.354	0.044	0.136	0.030	0.162	0.139	0.271	0.061	0.123	0.086	0.220
8365	chrX	10463193	10488992	+	0	NA	intron (NM_001193281, intron 2 of 2)	intron (NM_001193281, intron 2 of 2)	59551	NM_001193279	4281	Hs.27695	NM_000381	ENSG00000101871	MID1	BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding	0.643	nan	0.659	0.109	0.160	0.118	0.084	0.948	0.106	0.079	0.189	0.065	0.197	0.223	0.070	0.104	0.099	1.472	4.777	0.193	0.243	0.207	0.087	0.386	0.433	0.128	0.173	0.330	0.276	0.326	0.202	0.120	0.201	0.049	0.057	0.226	0.429	0.223	0.258	0.009	0.062	0.022	0.025	0.084	0.065	0.008	0.016	0.041	0.104
1069	chr10	23477423	23491150	+	0	NA	Intergenic	CpG	2826	NM_178161	256297	Hs.351503	NM_178161	ENSG00000168267	PTF1A	PACA|PAGEN2|PTF1-p48|bHLHa29	pancreas specific transcription factor, 1a	protein-coding	0.348	0.461	0.468	0.065	5.504	3.131	0.103	0.125	0.153	0.080	0.095	0.061	0.258	0.064	0.060	0.195	0.092	0.093	0.172	1.253	0.972	0.150	0.093	0.104	0.069	0.095	0.169	0.101	0.140	0.159	0.097	0.040	0.067	0.025	0.040	0.084	0.120	0.138	0.152	0.161	0.503	0.014	0.011	0.103	0.061		0.044	0.007	0.027
1224	chr10	119998241	120035706	+	0	NA	Intergenic	Intergenic	84866	NM_001134672	63877	Hs.105575	NM_022063	ENSG00000165669	FAM204A	C10orf84|bA319I23.1	family with sequence similarity 204 member A	protein-coding	0.946	nan	0.627	0.080	0.520	0.308	0.246	0.100	0.086	0.108	0.148	0.070	0.317	0.041	0.067	0.362	0.327	0.362	0.291	0.163	0.173	1.824	0.480	0.078	0.094	0.225	0.409	0.166	0.184	0.254	0.127	0.125	0.215	2.602	2.814	0.119	0.170	0.510	0.391	0.013	0.064	1.147	0.698	0.246	0.070	0.080	0.032	0.074	0.033
368	chr1	72095816	72110356	+	0	NA	intron (NM_173808, intron 4 of 6)	intron (NM_173808, intron 4 of 6)	199609	NR_046218	100852409	Hs.681780	NR_046218	ENSG00000228853	NEGR1-IT1	-	NEGR1 intronic transcript 1	ncRNA	nan	0.758	1.229	0.261	0.282	0.155	0.168	0.138	0.099	1.502	0.748	2.064	0.289	0.019	0.126	0.351	0.236	0.178	0.270	1.568	nan	9.436	3.376	0.425	0.442	2.267	nan	0.710	0.680	0.377	0.219	0.152	0.211	0.815	0.376	0.372	0.768	1.394	0.888	0.065	0.375	0.178	0.323	0.168	2.064	0.087	0.112	0.041	0.187
5998	chr4	116243984	116254079	+	0	NA	Intergenic	Intergenic	-213999	NM_022569	64579	Hs.591700	NM_022569	ENSG00000138653	NDST4	N-HSST|N-HSST 4|NDST-4|NHSST4	N-deacetylase and N-sulfotransferase 4	protein-coding	0.602	4.654	0.438	0.155	0.307	0.234	0.431	0.268	0.111	0.076	0.119	0.480	0.358	0.032	0.059	0.206	0.193	0.184	0.205	0.399	0.365	0.450	0.187	0.127	0.124	0.294	0.343	0.352	0.289	0.258	0.081	0.094	0.188	0.253	0.251	0.122	0.231	0.370	0.227	0.016	0.111	0.009	0.220	0.431	0.480		0.098	0.039	0.012
3078	chr16	19531478	19545225	+	0	NA	intron (NM_001323576, intron 2 of 13)	intron (NM_001323576, intron 2 of 13)	3172	NM_001199022	9738	Hs.279912	NM_014711	ENSG00000103540	CCP110	CP110|Cep110	centriolar coiled-coil protein 110	protein-coding	2.478	2.073	nan	2.406	2.488	1.168	1.533	0.820	0.189	1.435	0.682	1.563	4.617	0.595	0.111	1.178	1.132	1.536	2.152	2.257	2.024	5.743	2.222	1.489	1.580	2.110	2.420	4.448	7.152	nan	1.821	0.742	1.730	2.227	2.739	1.274	1.949	2.271	1.034	2.195	1.421	0.705	1.143	1.533	1.563	0.498	0.605	0.943	0.577
6293	chr5	66645614	66651564	+	0	NA	Intergenic	Intergenic	-155972	NM_005582	4064	Hs.87205	NM_005582	ENSG00000134061	CD180	LY64|Ly78|RP105	CD180 molecule	protein-coding	2.338	1.381	0.759	0.146	2.763	1.311	0.422	0.989	0.107	0.655	0.345	0.854	1.133	0.036	0.097	1.825	2.264	8.610	4.823	0.446	0.520	1.037	0.244	0.257	0.397	2.416	2.604	1.267	0.862	0.359	0.273	1.571	2.321	5.482	5.408	0.208	0.351	1.429	1.087	1.020	0.660	1.383	0.053	0.422	0.854	0.275	0.340	1.953	0.082
4705	chr2	213335251	213414740	+	0	NA	intron (NM_005235, intron 1 of 27)	intron (NM_005235, intron 1 of 27)	28357	NM_001042599	2066	Hs.390729	NM_005235	ENSG00000178568	ERBB4	ALS19|HER4|p180erbB4	erb-b2 receptor tyrosine kinase 4	protein-coding	nan	1.105	nan	0.244	0.347	0.154	0.130	0.111	0.033	0.219	0.179	0.123	0.796	1.791	0.163	0.747	0.678	1.021	1.952	0.248	0.264	1.171	0.461	0.535	0.513	4.763	5.876	0.395	nan	0.469	0.208	0.152	0.261	0.942	1.391	0.289	0.505	0.320	0.325	0.075	0.037	0.218	0.182	0.130	0.123	0.051	0.068	0.040	0.062
611	chr1	160323612	160346889	+	0	NA	Intergenic	Intergenic	-1611	NM_005598	4807	Hs.30956	NM_005598	ENSG00000171786	NHLH1	HEN1|NSCL|NSCL1|bHLHa35	nescient helix-loop-helix 1	protein-coding	3.956	nan	8.914	0.106	0.528	0.173	0.655	0.171	0.091	0.108	0.156	0.405	0.380	0.168	0.098	1.706	3.984	0.620	0.717	1.565	nan	0.638	0.264	0.241	0.258	2.821	3.708	0.413	nan	6.234	7.185	0.916	1.348	2.149	1.929	4.557	12.770	0.683	0.497	0.601	0.410	0.682	3.977	0.655	0.405	1.422	0.039	0.542	4.137
1849	chr12	14946777	14959135	+	0	NA	intron (NM_016312, intron 3 of 11)	intron (NM_016312, intron 3 of 11)	3445	NM_016312	51729	Hs.655138	NM_016312	ENSG00000084463	WBP11	NPWBP|PPP1R165|SIPP1|WBP-11	WW domain binding protein 11	protein-coding	2.542	1.187	1.820	1.988	1.462	0.716	0.696	0.434	0.052	1.278	0.736	1.017	2.177	0.973	0.159	1.056	0.886	1.639	2.533	nan	3.028	4.387	1.705	3.299	3.493	1.554	2.006	1.716	2.468	2.644	2.091	1.222	1.885	1.010	1.267	4.631	9.068	1.168	0.694	0.559	0.625	0.111	1.032	0.696	1.017	0.101	0.524	0.511	2.896
849	chr1	212093425	212108163	+	0	NA	Intergenic	L1ME3A|LINE|L1	96491	NR_135820	102723727	Hs.147656	NR_135818	ENSG00000229258	LOC102723727	-	uncharacterized LOC102723727	ncRNA	1.476	2.459	2.095	1.099	1.111	0.624	1.409	0.189	0.109	0.959	0.522	1.308	nan	0.029	0.141	0.686	1.108	0.559	1.181	1.600	1.851	nan	1.230	0.733	0.788	0.393	nan	3.431	3.482	0.445	0.370	0.167	0.207	5.686	6.474	0.508	0.795	2.044	1.044	1.261	0.672	2.498	0.139	1.409	1.308	0.237	1.078	0.088	0.185
4680	chr2	206631420	206653386	+	0	NA	TTS (NM_201267)	TTS (NM_201267)	95179	NM_201264	8828	Hs.471200	NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding	0.928	nan	0.873	0.260	0.444	0.183	0.745	0.139	0.051	0.203	0.204	0.748	4.831	0.034	0.065	0.302	0.153	0.237	0.438	0.769	0.637	1.468	0.922	0.463	0.557	0.596	0.971	2.358	2.226	0.513	0.360	0.180	0.237	0.515	0.856	0.436	0.977	1.112	0.696	2.653	0.838	0.260	0.105	0.745	0.748	0.159	0.352	0.041	0.216
492	chr1	145072607	145077613	+	0	NA	intron (NM_022359, intron 1 of 6)	intron (NM_022359, intron 1 of 6)	1076	NM_022359	9659	Hs.584841	NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding	3.668	4.668	2.939	0.867	0.669	0.539	0.776	2.015	0.575	1.690	1.163	0.918	14.702	0.599	0.460	1.228	1.216	0.771	1.410	4.864	5.810	4.567	0.945	2.100	2.078	4.122	5.835	3.300	3.563	1.803	1.593	5.435	7.404	2.744	2.344	1.198	2.184	4.687	3.203	0.361	0.836	0.955	0.220	0.776	0.918	0.078	3.430	2.118	0.322
2271	chr13	36557834	36571139	+	0	NA	intron (NM_001330071, intron 3 of 16)	intron (NM_001330071, intron 3 of 16)	-134488	NM_001195416	9201	Hs.507755	NM_004734	ENSG00000133083	DCLK1	CL1|CLICK1|DCAMKL1|DCDC3A|DCLK	doublecortin like kinase 1	protein-coding	0.832	1.546	0.771	0.324	1.034	0.431	0.485	0.381	0.084	2.298	1.073	2.314	1.618	0.041	0.064	0.641	0.567	0.210	0.505	1.939	1.784	3.830	1.956	0.139	0.119	0.421	0.664	1.469	1.422	0.434	0.349	0.259	0.450	2.845	2.406	0.240	0.398	1.630	0.989	0.259	0.369	0.560	0.262	0.485	2.314	0.044	0.910	0.074	0.075
3225	chr16	90084293	90090074	+	0	NA	promoter-TSS (NM_001288708)	promoter-TSS (NM_001288708)	-644	NM_001288709	79007	Hs.301394	NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding	nan	nan	3.703	6.366	6.632	3.906	9.805	0.837	0.084	1.383	0.853	8.913	7.517	0.804	0.072	nan	4.564	3.903	5.798	6.060	5.341	6.899	2.034	nan	4.877	2.733	nan	3.101	5.841	nan	4.022	2.455	5.893	4.644	7.434	4.039	4.440	nan	1.850	2.702	3.425	1.928	1.428	9.805	8.913	1.572	4.694	2.327	0.974
8032	chr9	6546720	6559678	+	0	NA	intron (NM_000170, intron 20 of 24)	intron (NM_000170, intron 20 of 24)	92493	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine decarboxylase	protein-coding	1.019	4.798	0.982	1.789	0.518	0.260	2.323	0.115	0.097	0.471	0.260	0.582	2.260	0.032	0.056	0.291	0.215	0.296	0.403	0.998	1.009	8.217	2.760	0.122	0.180	0.781	1.331	1.570	2.097	1.626	1.603	0.159	0.302	2.746	2.460	0.442	nan	2.796	1.558	0.214	1.095	0.492	0.296	2.323	0.582	0.025	1.498	0.023	0.191
8197	chr9	92794600	92817777	+	0	NA	Intergenic	Intergenic	-2407	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA	0.814	nan	1.337	4.596	3.897	2.014	1.638	0.057	0.062	1.419	0.620	1.830	2.999	0.019	0.095	0.376	0.475	1.273	nan	2.241	1.889	4.111	1.874	0.151	0.093	0.558	0.717	4.609	4.573	0.250	0.155	0.149	0.217	1.632	2.470	0.283	0.634	2.709	1.226	0.942	1.030	0.500	0.331	1.638	1.830	0.344	0.892	0.068	0.170
3071	chr16	18934881	18940352	+	0	NA	5' UTR (NM_015092, exon 1 of 63)	5' UTR (NM_015092, exon 1 of 63)	110	NM_015092	23049	Hs.460179	NM_015092	ENSG00000157106	SMG1	61E3.4|ATX|LIP	SMG1, nonsense mediated mRNA decay associated PI3K related kinase	protein-coding	3.457	2.261	nan	5.153	3.627	1.732	2.421	2.453	0.235	1.318	0.799	2.766	8.097	2.742	0.098	3.176	3.205	2.566	3.492	3.376	3.174	9.352	3.087	10.136	10.786	1.875	2.726	10.514	17.689	nan	4.556	1.663	3.842	4.726	5.546	3.832	5.184	2.614	1.269	2.072	2.869	1.370	1.768	2.421	2.766	1.034	1.155	1.761	2.204
3272	chr17	8277309	8287506	+	0	NA	intron (NM_001315530, intron 3 of 3)	MER5A|DNA|hAT-Charlie	-2378	NM_001304947	124751	Hs.304604	NM_213597	ENSG00000184619	KRBA2	-	KRAB-A domain containing 2	protein-coding	3.321	1.892	2.084	1.587	2.701	1.594	1.641	0.703	0.141	0.612	0.633	2.327	4.026	4.383	0.235	3.107	3.507	3.782	5.455	4.438	4.877	4.894	1.752	2.317	2.199	2.174	3.034	4.315	4.836	2.151	2.305	1.334	2.083	1.431	1.617	4.876	7.682	0.827	0.404	0.839	1.140	0.289	0.731	1.641	2.327	0.611	2.529	0.643	2.498
8287	chr9	130889046	130903396	+	0	NA	Intergenic	L1MB3|LINE|L1	5413	NR_024425	389791	Hs.632678	NM_001013652	ENSG00000232850	PTGES2-AS1	-	PTGES2 antisense RNA 1 (head to head)	ncRNA	nan	1.749	3.208	2.308	1.670	0.952	1.189	0.550	0.124	1.067	0.540	1.463	3.273	1.021	0.087	1.455	1.498	1.536	2.497	2.416	2.719	nan	1.349	2.926	2.924	1.120	1.695	3.001	3.651	6.129	5.951	1.049	1.579	2.314	2.401	1.674	1.826	2.969	1.381	0.837	0.952	0.657	0.426	1.189	1.463	1.745	1.666	0.354	0.628
5384	chr3	59751961	59768096	+	0	NA	intron (NM_002012, intron 8 of 9)	MER58A|DNA|hAT-Charlie	306825	NM_001320901	2272	Hs.655995	NM_002012	ENSG00000189283	FHIT	AP3Aase|FRA3B	fragile histidine triad	protein-coding	1.436	0.968	nan	0.066	0.119	0.060	0.127	0.124	0.048	0.068	0.072	0.104	0.328	0.027	0.076	0.239	0.173	0.212	0.369	0.274	0.321	0.319	0.154	0.159	0.153	0.546	0.695	0.195	0.231	nan	0.378	0.089	0.103	0.086	0.148	1.524	5.197	0.557	0.343	0.049	0.094	0.012	0.290	0.127	0.104	0.138	0.057	0.018	4.630
1939	chr12	51413097	51427534	+	0	NA	promoter-TSS (NM_001174127)	promoter-TSS (NM_001174127)	-116	NM_001174127	4891	Hs.505545	NM_000617	ENSG00000110911	SLC11A2	AHMIO1|DCT1|DMT1|NRAMP2	solute carrier family 11 member 2	protein-coding	nan	1.812	1.004	1.679	1.427	0.618	1.156	1.579	0.261	0.654	0.537	1.975	1.059	0.874	0.101	nan	1.855	2.632	3.990	3.124	nan	5.292	1.747	2.846	2.940	0.893	nan	1.776	nan	1.744	1.560	0.943	1.702	2.777	3.411	1.163	1.596	1.457	0.873	0.389	1.343	0.737	0.596	1.156	1.975	0.424	0.535	0.853	0.427
5054	chr20	62762889	62809524	+	0	NA	Intergenic	Intergenic	-9621	NM_004535	4661	Hs.279562	NM_004535	ENSG00000196132	MYT1	C20orf36|MTF1|MYTI|NZF2|PLPB1|ZC2H2C1|ZC2HC4A	myelin transcription factor 1	protein-coding	2.158	3.643	2.120	1.045	3.034	1.575	0.850	0.078	0.115	0.992	0.492	4.952	1.684	0.097	0.115	4.346	nan	0.107	0.139	4.360	4.437	2.868	1.210	0.477	0.566	0.720	1.068	2.743	3.813	2.430	2.394	1.518	1.850	0.900	0.673	2.037	3.647	1.887	1.207	5.298	4.401	0.202	0.680	0.850	4.952	0.522	1.076	1.023	1.455
6090	chr4	182349326	182373455	+	0	NA	Intergenic	Intergenic	-281088	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA	nan	0.659	nan	0.029	1.109	0.599	0.079	0.059	0.080	0.171	0.189	0.115	0.214	0.076	0.082	0.196	0.125	0.242	0.318	0.283	0.281	3.553	1.131	0.141	0.138	0.100	0.154	0.265	0.216	0.300	0.202	0.125	0.167	0.285	0.347	0.065	0.154	0.392	0.318	0.071	0.853	0.055	0.079	0.079	0.115	0.016	0.034	0.021	0.041
5853	chr4	25746498	25762102	+	0	NA	intron (NM_001297594, intron 23 of 23)	AluSq2|SINE|Alu	96214	NM_001177999	10568	Hs.479372	NM_006424	ENSG00000157765	SLC34A2	NAPI-3B|NAPI-IIb|NPTIIb	solute carrier family 34 member 2	protein-coding	0.619	0.718	nan	0.190	0.244	0.170	0.172	0.077	0.133	0.167	0.175	0.152	0.286	0.040	0.077	0.377	0.144	0.236	0.485	0.241	0.330	0.368	0.214	0.310	0.279	0.359	0.524	0.415	0.441	0.349	0.200	0.090	0.149	0.056	0.075	0.203	0.287	nan	0.579	0.749	4.250	0.024	0.101	0.172	0.152	0.025	0.033	0.057	0.042
5784	chr3	193428187	193432055	+	0	NA	Intergenic	Intergenic	-85000	NR_046634	100873941	Hs.679364	NR_046634	ENSG00000224855	OPA1-AS1	-	OPA1 antisense RNA 1	ncRNA	nan	1.413	1.030	7.494	3.379	1.792	0.006	0.193	0.373	6.996	2.220	4.748	nan		0.043	0.343	0.388	0.160	0.317	2.534	2.366	14.642	18.441	0.273	0.367	0.189	0.409	12.677	17.836	0.633	0.307	0.321	0.640	2.380	2.655	0.321	0.407	5.820	2.610	0.081	0.069	0.718	0.266	0.006	4.748		3.463	0.077	0.031
67	chr1	9362535	9424344	+	0	NA	intron (NM_025106, intron 1 of 2)	AluSx|SINE|Alu	40498	NM_025106	80176	Hs.8261	NM_025106	ENSG00000171621	SPSB1	SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	1.003	nan	0.894	0.802	0.271	0.163	0.259	0.391	0.123	0.185	0.164	0.170	0.498	0.123	0.105	0.338	0.433	0.336	0.493	2.180	1.749	0.099	0.069	0.451	0.446	0.213	nan	nan	5.052	nan	0.479	0.237	0.239	0.116	0.131	0.546	1.036	0.373	0.388	0.527	0.428	0.020	0.101	0.259	0.170	0.191	0.568	0.034	0.286
3335	chr17	27050866	27056742	+	0	NA	promoter-TSS (NM_138463)	promoter-TSS (NM_138463)	145	NM_001160407	116238	Hs.499952	NM_138463	ENSG00000160606	TLCD1	-	TLC domain containing 1	protein-coding	nan	nan	nan	3.736	8.339	3.800	2.968	2.690	0.471	1.229	0.643	3.251	16.807	5.786	0.194	6.484	7.692	4.652	8.323	4.326	3.391	8.233	2.558	9.750	10.521	2.845	4.470	14.200	16.983	11.567	14.125	2.386	5.399	5.094	5.402	6.192	9.787	2.857	1.602	6.089	6.199	1.535	4.346	2.968	3.251	1.336	4.405	4.276	5.111
3636	chr18	979819	991509	+	0	NA	Intergenic	Intergenic	80467	NM_001117	116	Hs.531719	NM_001117	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	1.338	0.936	1.695	3.659	0.936	0.500	0.095	0.129	0.055	0.430	0.261	1.790	nan	0.047	0.133	0.287	0.211	0.217	0.291	1.964	2.234	nan	2.568	0.405	0.352	1.017	nan	4.936	5.244	nan	1.388	0.195	0.295	1.481	2.265	0.372	nan	nan	2.048	1.308	0.236	0.369	0.362	0.095	1.790	0.433	2.158	0.144	0.095
3133	chr16	49052298	49062649	+	0	NA	Intergenic	MER113A|DNA|hAT-Charlie	258269	NM_004352	869	Hs.458423	NM_004352	ENSG00000102924	CBLN1	-	cerebellin 1 precursor	protein-coding	1.369	1.878	4.162	0.056	0.522	0.309	5.641	0.116	0.092	0.015	0.015	0.373	0.348	0.031	0.070	0.467	0.441	0.072	0.080	0.486	0.472	0.061	0.052	0.120	0.086	0.135	0.479	2.131	3.829	1.266	1.392	0.199	0.256	1.755	1.548	0.573	1.008	0.363	0.609	0.122	0.438	0.253	2.275	5.641	0.373	0.507	0.382	0.048	0.121
7394	chr7	96216580	96231528	+	0	NA	Intergenic	Arthur1|DNA|hAT-Tip100	69596	NR_038948	100506136	Hs.729869	NR_038948	ENSG00000127922	LOC100506136	-	uncharacterized LOC100506136	ncRNA	nan	2.738	nan	1.129	6.684	3.346	2.870	0.140	0.053	3.413	1.603	2.461	1.511	0.073	0.189	0.536	0.449	2.576	5.060	1.826	2.183	10.667	6.054	0.254	0.322	0.626	0.831	2.416	2.473	0.552	0.181	0.266	0.517	10.796	15.880	0.658	nan	4.628	2.237	0.754	0.422	3.928	1.819	2.870	2.461	0.125	0.489	0.107	0.468
6112	chr4	189896281	189918572	+	0	NA	Intergenic	Intergenic	530694	NR_033869	401164	Hs.435756	NR_033869	ENSG00000249378	LINC01060	-	long intergenic non-protein coding RNA 1060	ncRNA	nan	1.199	nan	0.669	0.730	0.415	0.385	0.066	0.131	0.162	0.158	1.966	0.513	0.047	0.089	0.302	0.214	0.451	0.932	0.747	0.857	4.976	1.672	0.220	0.267	0.086	0.123	1.379	1.332	0.342	0.202	0.217	0.243	0.955	0.909	0.084	0.160	0.896	0.432	0.002	0.445	0.128	0.531	0.385	1.966	0.043	1.278	0.214	0.024
327	chr1	59856589	59900980	+	0	NA	intron (NM_001244714, intron 3 of 13)	L2c|LINE|L2	-102517	NM_001278224	55277	Hs.444301	NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding	1.671	1.255	1.832	0.129	0.338	0.216	0.575	1.272	0.130	0.350	0.190	0.888	0.352	0.054	0.131	0.520	0.566	0.609	0.375	0.893	1.013	0.408	0.294	0.447	0.420	3.228	3.482	1.171	0.917	1.481	1.369	0.192	0.292	0.145	0.112	1.418	nan	1.050	0.743	0.176	0.363	0.045	0.798	0.575	0.888	0.528	0.254	0.067	1.276
1281	chr11	2398560	2416068	+	0	NA	intron (NM_004356, intron 1 of 7)	L1ME2z|LINE|L1	-8092	NR_108080	101927682	Hs.675920	NR_108080	ENSG00000238184	CD81-AS1	-	CD81 antisense RNA 1	ncRNA	1.454	0.900	1.506	0.226	0.614	0.367	1.352	0.452	0.128	0.271	0.154	0.783	1.659	0.462	0.058	2.452	3.440	0.965	1.421	0.487	0.464	0.756	0.386	2.403	2.391	0.540	0.875	0.505	1.187	0.673	0.737	5.624	7.110	0.471	0.427	0.459	0.462	0.419	0.377	0.108	0.051	0.119	0.167	1.352	0.783	0.323	0.580	5.993	0.156
3214	chr16	87881031	87906420	+	0	NA	intron (NM_003486, intron 1 of 9)	AluSq|SINE|Alu	9380	NM_003486	8140	Hs.513797	NM_003486	ENSG00000103257	SLC7A5	4F2LC|CD98|D16S469E|E16|LAT1|MPE16	solute carrier family 7 member 5	protein-coding	nan	1.234	2.106	1.655	3.878	1.986	1.741	0.792	0.130	1.009	0.534	1.954	2.504	2.851	0.094	3.443	3.932	2.762	4.056	1.529	1.502	1.531	0.432	2.465	2.368	0.695	1.152	2.045	2.208	2.228	3.007	2.466	4.600	0.800	1.014	1.338	3.040	1.511	0.805	1.040	0.930	0.270	0.725	1.741	1.954	0.750	2.602	1.986	0.645
4554	chr2	155997917	156014832	+	0	NA	Intergenic	Intergenic	451281	NM_001260509	3760	Hs.591606	NM_002239	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	potassium voltage-gated channel subfamily J member 3	protein-coding	nan	0.846	nan	0.373	0.302	0.246	0.128	0.123	0.046	0.435	0.332	0.219	0.272	0.038	0.062	0.644	0.707	0.227	0.282	0.130	0.186	1.875	0.869	0.460	0.396	6.183	6.479	0.815	0.741	3.099	2.759	0.304	0.593	1.308	1.325	0.363	0.766	0.351	0.406	0.032	0.063	0.465	0.060	0.128	0.219	0.386	0.114	0.229	0.066
6307	chr5	69972706	70044206	+	0	NA	Intergenic	Intergenic	-126827	NR_027386	653188	Hs.631974	NR_027386	ENSG00000253203	GUSBP3	-	glucuronidase, beta pseudogene 3	pseudo	0.936	nan	0.833	0.566	0.564	0.278	0.670	0.141	0.074	1.197	0.900	0.360	1.558	0.247	0.134	0.716	0.684	0.765	1.100	1.113	1.114	nan	2.263	0.879	0.710	1.967	nan	1.117	1.591	0.844	0.687	0.168	0.443	2.825	4.039	0.292	0.403	2.502	1.340	0.222	0.594	1.929	0.465	0.670	0.360	0.282	0.309	0.219	0.085
1603	chr11	102321641	102324918	+	0	NA	promoter-TSS (NR_135053)	promoter-TSS (NR_135053)	-371	NR_135053	101928424	Hs.647210	NR_135053	ENSG00000255337	LOC101928424	-	uncharacterized LOC101928424	ncRNA	5.276	4.390	4.231	6.942	7.877	3.857	4.681	1.487	0.148	5.434	2.244	6.840	17.644	8.209	0.238	7.917	9.332	8.893	11.828	19.747	14.919	11.061	2.944	27.376	28.336	5.925	7.310	12.269	18.388	7.216	10.099	7.097	18.813	13.993	11.968	6.466	6.601	6.393	4.207	5.609	4.107	2.788	3.385	4.681	6.840	0.760	4.024	6.896	3.466
1881	chr12	27862472	27865235	+	0	NA	exon (NM_001190864, exon 1 of 7)	exon (NM_001190864, exon 1 of 7)	147	NM_001190864	60488	Hs.714076	NM_021821	ENSG00000061794	MRPS35	HDCMD11P|MDS023|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding	nan	nan	nan	7.951	2.108	1.620	2.917	0.977	0.077	2.964	1.246	4.460	8.642	5.684	0.204	3.398	3.729	5.916	9.242	7.490	6.950	12.161	3.799	19.403	19.676	4.448	4.889	4.688	8.000	6.149	6.185	2.407	5.041	2.786	2.432	6.132	5.818	4.462	2.399	1.472	1.599	0.379	1.992	2.917	4.460	10.665	4.173	1.391	1.840
4403	chr2	74207712	74213609	+	0	NA	Intergenic	Intergenic	-2094	NR_104030	100874048	Hs.600674	NR_104029	ENSG00000237883	DGUOK-AS1	-	DGUOK antisense RNA 1	ncRNA	nan	nan	4.909	4.070	3.896	2.162	4.301	2.384	0.135	2.036	1.033	7.213	9.757	3.112	0.123	4.964	5.862	6.253	9.574	6.742	5.426	5.079	2.242	14.641	12.858	1.454	2.375	8.928	10.878	4.871	5.398	2.666	7.985	2.023	1.269	6.221	3.932	nan	1.270	3.685	1.235	0.387	2.307	4.301	7.213	1.217	2.305	3.459	2.629
5833	chr4	8007671	8056774	+	0	NA	intron (NM_001130083, intron 10 of 20)	intron (NM_001130083, intron 10 of 20)	-25114	NR_029511	407052		NR_029511	ENSG00000207807	MIR95	MIRN95|hsa-mir-95|miR-95	microRNA 95	ncRNA	1.246	0.843	nan	2.922	1.654	0.861	1.279	0.076	0.075	2.225	1.273	5.277	2.834	0.044	0.057	1.342	2.016	0.414	0.665	4.716	5.340	nan	1.014	0.405	0.496	0.265	0.421	3.689	4.260	1.704	1.376	1.299	1.443	0.479	0.659	0.139	0.183	nan	1.260	3.736	4.485	0.163	1.720	1.279	5.277	0.465	0.959	1.092	0.071
2049	chr12	81597938	81607347	+	0	NA	intron (NM_001330242, intron 9 of 15)	intron (NM_001330242, intron 9 of 15)	50475	NR_039848	100616133		NR_039848	ENSG00000265227	MIR4699	-	microRNA 4699	ncRNA	0.982	1.065	0.723	0.428	0.773	0.481	1.441	0.353	0.131	1.617	0.783	1.077	2.121	0.046	0.092	0.368	0.530	0.277	0.332	6.451	7.225	9.004	7.616	0.219	0.318	0.859	1.162	2.018	3.229	2.232	1.656	0.194	0.226	1.327	1.473	0.360	0.576	1.339	1.078	0.018	0.782	0.174	0.117	1.441	1.077	0.493	1.482	0.042	0.168
3197	chr16	84625578	84656083	+	0	NA	intron (NM_021149, intron 2 of 3)	L2a|LINE|L2	10872	NM_021149	23406	Hs.289092	NM_021149	ENSG00000103187	COTL1	CLP	coactosin like F-actin binding protein 1	protein-coding	nan	0.995	0.732	0.827	2.629	1.386	1.752	0.325	0.167	0.298	0.250	1.270	2.322	0.235	0.095	0.747	0.953	0.292	0.495	1.061	1.102	0.903	0.260	0.450	0.457	0.348	0.582	4.631	3.866	0.797	0.559	0.240	0.299	0.248	0.269	0.686	1.413	1.065	0.560	0.645	0.890	0.031	0.063	1.752	1.270	0.127	0.083	0.056	0.318
8336	chr9	139218582	139224365	+	0	NA	promoter-TSS (NM_001145638)	promoter-TSS (NM_001145638)	306	NR_026964	26102	Hs.561893	NR_026964	ENSG00000262075	DKFZP434A062	-	uncharacterized LOC26102	ncRNA	nan	1.890	6.866	0.770	1.511	0.661	2.369	0.724	0.149	0.682	0.352	2.087	3.660	2.116	0.069	1.188	2.023	1.785	2.947	5.791	4.970	nan	0.828	1.060	1.298	2.284	3.233	1.552	2.807	8.935	11.100	1.210	2.202	1.890	1.473	2.527	2.833	1.671	1.160	1.784	1.305	0.442	0.440	2.369	2.087	2.937	0.643	0.735	0.814
4241	chr2	17969571	17982722	+	0	NA	Intergenic	Intergenic	-21640	NM_001105569	343930	Hs.705359	NM_001105569	ENSG00000151379	MSGN1	MSOG|pMsgn1	mesogenin 1	protein-coding	1.150	0.620	0.781	0.087	0.222	0.136	0.437	0.103	0.098	0.430	0.174	0.105	0.480	0.069	0.120	0.397	0.388	0.227	0.490	0.512	0.468	0.710	0.217	0.265	0.332	0.389	0.726	0.499	nan	1.021	0.709	0.228	0.521	0.051	0.100	0.382	nan	3.152	1.817	0.669	0.162	0.028	0.267	0.437	0.105	0.346	0.031	0.231	0.297
1558	chr11	84285403	84320406	+	0	NA	intron (NM_001142699, intron 6 of 27)	MER5B|DNA|hAT-Charlie	-274522	NM_001206769	1740	Hs.367656	NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding	0.559	0.734	0.544	0.117	0.314	0.146	0.117	0.037	0.060	0.121	0.124	0.037	0.449	2.365	0.135	0.481	0.287	0.214	0.311	0.287	0.339	0.750	0.296	0.476	0.443	0.481	0.735	0.308	0.338	0.338	0.146	0.143	0.305	0.154	0.137	0.213	0.423	0.707	0.553	0.024	0.071	0.025	0.041	0.117	0.037	0.008	0.301	0.066	0.064
3370	chr17	34899397	34903472	+	0	NA	intron (NM_024835, intron 1 of 13)	CpG	697	NM_024835	79893	Hs.514116	NM_024835	ENSG00000278311	GGNBP2	DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403	gametogenetin binding protein 2	protein-coding	7.943	6.949	5.612	4.910	11.413	6.693	6.457	5.238	0.473	6.470	2.861	6.291	16.501	6.410	0.222	8.022	8.887	11.178	14.667	nan	12.700	13.105	6.414	20.429	21.478	5.132	6.702	11.043	18.164	13.587	15.349	5.718	10.425	10.961	12.348	10.396	10.712	4.584	1.753	6.803	6.993	2.677	4.459	6.457	6.291	2.680	3.721	2.924	3.646
5422	chr3	88855714	88884281	+	0	NA	Intergenic	AluSx1|SINE|Alu	-286677	NM_005233	2042	Hs.123642	NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding	nan	0.683	0.542	0.062	0.053	0.034	0.059	0.050	0.039	0.028	0.092	0.025	0.131	0.061	0.113	0.364	0.321	0.501	0.312	0.220	0.257	0.129	0.084	0.165	0.161	6.136	7.029	0.128	0.103	0.412	0.105	0.147	0.206	0.034	0.056	0.234	0.573	0.204	0.294	0.029	0.028	0.007	0.011	0.059	0.025	0.007	0.039	0.038	0.138
5239	chr22	30011073	30022782	+	0	NA	intron (NM_181831, intron 1 of 14)	MIR|SINE|MIR	17382	NM_181832	4771	Hs.187898	NM_000268	ENSG00000186575	NF2	ACN|BANF|SCH	neurofibromin 2	protein-coding	nan	0.725	0.718	0.156	0.282	0.151	0.537	1.196	0.545	0.129	0.074	0.220	0.592	0.213	0.109	0.610	0.687	2.104	7.945	0.304	0.352	0.358	0.199	0.459	0.550	1.090	nan	0.395	0.559	0.509	0.389	0.214	0.256	0.201	0.315	0.385	nan	0.894	0.904	0.091	0.085	0.049	0.054	0.537	0.220	0.150	0.109	0.085	0.138
5794	chr3	194228631	194235939	+	0	NA	Intergenic	Intergenic	24416	NR_033929	401106	Hs.407087	NR_033929		LINC00884	-	long intergenic non-protein coding RNA 884	ncRNA	nan	2.203	0.590	2.550	0.619	0.352	0.180	0.432	0.308	1.139	0.816	1.927	nan	0.045	0.060	0.333	0.352	0.466	0.502	0.735	0.808	9.391	3.791	0.548	0.491	0.472	0.902	8.313	11.071	0.723	0.376	0.326	0.692	1.122	0.739	0.428	0.676	2.408	1.421	0.682	0.884	0.285	0.868	0.180	1.927	0.160	0.069	0.430	0.136
5782	chr3	192593113	192616034	+	0	NA	intron (NM_178496, intron 1 of 1)	L1ME3C|LINE|L1	31377	NM_178496	151963	Hs.151443	NM_178496	ENSG00000180611	MB21D2	C3orf59	Mab-21 domain containing 2	protein-coding	nan	1.022	0.710	0.238	0.499	0.302	0.379	0.657	0.254	0.198	0.180	0.121	nan	0.057	0.073	0.310	0.278	1.448	5.734	0.359	0.395	0.273	0.174	0.511	0.562	0.180	0.265	0.483	0.478	0.727	0.413	0.198	0.308	0.073	0.095	0.492	0.910	0.584	0.598	0.044	0.135	0.029	0.243	0.379	0.121	0.038	0.026	0.044	0.210
4881	chr20	20888120	20894212	+	0	NA	Intergenic	L1M5|LINE|L1	-197900	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic alpha subunit 2	protein-coding	0.619	0.994	nan	1.329	1.139	0.509	0.504	0.070	0.214	1.434	0.785	6.761	0.640	0.018	0.090	0.558	0.546	0.199	0.306	0.973	0.923	8.816	5.678	0.256	0.269	0.207	0.344	0.581	0.869	0.471	0.193	0.196	0.250	0.418	0.346	0.092	0.145	3.432	1.448	0.044	0.116	0.016	0.171	0.504	6.761	0.047	0.067	0.009	0.062
8117	chr9	35161250	35181289	+	0	NA	intron (NM_001330653, intron 1 of 39)	AluSx1|SINE|Alu	9280	NM_006377	10497	Hs.493791	NM_006377	ENSG00000198722	UNC13B	MUNC13|UNC13|Unc13h2	unc-13 homolog B	protein-coding	0.818	nan	0.821	1.048	0.598	0.328	0.858	0.297	0.120	0.633	0.415	0.421	1.050	0.232	0.086	0.278	0.307	0.620	0.827	0.902	0.945	3.937	2.153	0.413	0.401	0.668	0.919	0.743	1.140	0.742	0.617	0.273	0.598	1.237	1.272	0.648	1.091	3.154	1.420	0.194	0.262	0.338	0.187	0.858	0.421	0.072	0.548	0.161	0.254
6809	chr6	52492587	52515556	+	0	NA	Intergenic	AluY|SINE|Alu	-25128	NR_024403	730101	Hs.7921	NR_024403	ENSG00000216775	LOC730101	-	uncharacterized LOC730101	ncRNA	1.301	0.843	nan	0.281	4.086	2.276	0.327	0.189	0.063	0.251	0.169	0.543	0.299	0.077	0.128	0.700	0.902	0.346	0.372	1.328	1.309	2.538	0.848	0.268	0.238	0.474	0.674	0.859	0.818	0.821	0.628	0.167	0.301	2.047	2.431	0.418	0.923	2.132	1.236	0.369	0.093	0.648	0.065	0.327	0.543	0.043	0.120	0.064	0.120
4468	chr2	111877340	111881893	+	0	NA	intron (NM_207003, intron 1 of 4)	CpG-15379	1125	NM_001204111	10018	Hs.469658	NM_006538	ENSG00000153094	BCL2L11	BAM|BIM|BOD	BCL2 like 11	protein-coding	6.933	nan	6.638	6.826	3.402	2.354	3.429	2.328	0.177	2.564	1.718	6.831	16.582	1.998	0.058	6.323	7.508	7.530	11.378	10.612	nan	9.080	3.602	12.050	11.937	1.545	2.701	9.781	15.332	4.095	6.368	3.813	7.950	2.940	2.793	3.937	3.402	2.340	1.513	4.548	5.027	0.920	2.766	3.429	6.831	1.362	3.115	2.717	1.111
159	chr1	27344516	27358851	+	0	NA	Intergenic	AluSz|SINE|Alu	-12350	NM_052943	115572	Hs.632378	NM_052943	ENSG00000158246	FAM46B	-	family with sequence similarity 46 member B	protein-coding	1.038	0.926	nan	2.358	0.686	0.415	0.196	0.184	0.157	0.707	0.273	0.712	0.754	0.144	0.152	0.305	0.323	0.246	0.400	0.877	1.240	3.664	1.427	0.450	0.458	0.347	0.632	3.080	3.423	0.594	0.369	0.500	0.559	2.363	2.292	0.789	1.675	3.047	1.305	0.082	1.392	0.526	0.046	0.196	0.712	0.167	0.604	0.158	0.364
747	chr1	192309699	192322375	+	0	NA	intron (NM_001039152, intron 2 of 4)	intron (NM_001039152, intron 2 of 4)	29915	NM_001039152	431704	Hs.558673	NM_001039152	ENSG00000253148	RGS21	-	regulator of G-protein signaling 21	protein-coding	0.949	nan	0.907	0.055	0.215	0.077	0.201	0.168	0.127	0.118	0.162	0.028	0.274	0.069	0.116	2.181	0.928	5.606	2.777	0.289	0.425	0.187	0.081	2.357	2.406	0.448	nan	0.214	0.273	1.146	0.903	0.118	0.335	0.053	0.116	0.640	1.081	0.181	0.318	0.019	0.099	0.015	0.006	0.201	0.028	0.123	0.032	0.094	0.235
1633	chr11	111599142	111609635	+	0	NA	intron (NM_181699, intron 15 of 15)	intron (NM_181699, intron 15 of 15)	32781	NM_001177562	5519	Hs.269128	NM_002716	ENSG00000137713	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2 scaffold subunit Abeta	protein-coding	1.784	2.590	2.203	2.422	1.953	1.436	0.462	0.927	0.122	2.423	0.805	3.503	2.483	0.194	0.081	6.869	12.785	1.312	3.057	6.960	8.381	0.956	0.483	0.824	0.939	4.119	nan	8.860	9.754	0.481	0.381	1.845	2.454	1.208	1.402	0.325	0.601	4.178	2.789	0.598	0.773	0.155	0.281	0.462	3.503	1.025	5.818	0.699	0.094
4540	chr2	145887777	145938832	+	0	NA	Intergenic	Intergenic	487770	NR_033870	401014	Hs.742290	NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA	6.605	nan	6.252	0.102	0.251	0.135	0.438	0.468	0.069	0.067	0.095	0.155	0.295	0.027	0.079	0.434	0.229	0.329	0.445	0.248	0.265	0.158	0.079	0.357	0.304	0.314	0.444	0.364	0.343	0.424	0.202	0.132	0.213	16.463	22.458	0.296	0.522	0.298	0.268	0.049	0.030	2.829	0.050	0.438	0.155	0.064	0.022	0.043	0.082
1942	chr12	52207550	52222250	+	0	NA	exon (NM_001013690, exon 2 of 2)	exon (NM_001013690, exon 2 of 2)	10801	NM_001013690	401720	Hs.648218	NM_001013690		FIGNL2	-	fidgetin like 2	protein-coding	nan	1.710	0.793	0.736	1.409	0.774	1.699	0.653	0.165	1.152	0.582	2.891	3.102	0.982	0.076	nan	3.016	0.713	1.036	5.690	nan	3.746	1.347	0.510	0.499	0.945	nan	3.360	nan	1.882	2.183	1.268	2.537	2.152	1.912	0.773	1.148	2.039	1.205	1.280	1.552	0.453	0.824	1.699	2.891	0.576	1.369	0.577	0.412
1427	chr11	58903325	58918074	+	0	NA	promoter-TSS (NR_110184)	promoter-TSS (NR_110184)	-418	NR_110184	101927204	Hs.659259	NR_110184	ENSG00000245571	LOC101927204	-	uncharacterized LOC101927204	ncRNA	0.875	1.713	1.442	1.699	2.164	1.112	0.157	1.580	0.087	0.997	0.414	0.480	5.424	2.125	0.112	0.534	0.353	6.770	7.033	3.131	2.980	2.084	0.583	4.608	4.694	0.288	0.383	1.705	2.314	0.421	0.139	0.419	0.462	1.677	2.336	0.113	0.257	0.825	0.727	2.205	1.172	0.386	0.037	0.157	0.480	0.039	0.048	0.094	0.068
4217	chr2	11882563	11919507	+	0	NA	intron (NM_145693, intron 1 of 19)	intron (NM_145693, intron 1 of 19)	-6535	NR_036071	100422862		NR_036071	ENSG00000265056	MIR548S	-	microRNA 548s	ncRNA	1.362	1.756	1.014	1.606	1.379	0.492	1.369	0.569	0.097	1.114	0.344	1.262	4.243	0.133	0.097	1.708	1.771	3.410	4.814	2.002	1.791	2.199	0.852	0.530	0.509	0.715	1.097	3.168	nan	1.113	1.184	1.368	1.670	0.791	0.984	0.791	nan	1.958	1.034	3.312	3.171	0.190	0.390	1.369	1.262	0.488	0.942	0.973	0.305
1484	chr11	67346564	67361748	+	0	NA	TTS (NM_000852)	TTS (NM_000852)	3090	NM_000852	2950	Hs.523836	NM_000852	ENSG00000084207	GSTP1	DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI	glutathione S-transferase pi 1	protein-coding	nan	2.574	0.893	3.035	1.012	0.581	0.195	0.275	0.138	0.062	0.143	2.328	4.776	1.057	0.128	2.335	2.476	2.047	3.759	3.201	2.830	1.292	0.336	4.064	4.177	0.873	1.376	7.121	8.042	0.484	0.294	2.342	3.270	1.232	1.359	1.570	2.040	0.406	0.423	1.958	0.656	0.182	0.381	0.195	2.328	0.051	0.742	2.375	0.686
1017	chr10	11476406	11488437	+	0	NA	Intergenic	MER41B|LTR|ERV1	91858	NM_001080491	9712	Hs.498661	NM_014688	ENSG00000148429	USP6NL	RNTRE|TRE2NL|USP6NL-IT1	USP6 N-terminal like	protein-coding	nan	0.486	0.541	0.176	0.299	0.160	0.192	0.133	0.121	0.079	0.083	0.080	0.213	0.045	0.102	0.429	0.311	0.221	0.281	0.241	0.258	6.112	1.606	0.179	0.179	0.188	0.334	0.165	0.187	0.147	0.070	0.123	0.144	0.372	0.454	0.097	0.122	0.657	0.417	0.393	0.097	0.055	0.053	0.192	0.080	0.032	0.034	0.016	0.010
2042	chr12	80075119	80088145	+	0	NA	intron (NM_002583, intron 2 of 6)	intron (NM_002583, intron 2 of 6)	3158	NM_002583	5074	Hs.643130	NM_002583	ENSG00000177425	PAWR	PAR4|Par-4	pro-apoptotic WT1 regulator	protein-coding	2.098	2.293	2.022	2.379	1.830	0.974	1.362	2.664	0.360	1.302	0.993	1.488	4.065	1.714	0.110	1.863	2.493	2.730	4.802	3.627	3.389	3.970	1.327	6.648	6.559	1.941	2.792	5.832	8.395	2.773	3.228	1.045	3.040	4.319	5.787	2.350	2.893	1.705	1.281	1.683	1.636	1.249	0.878	1.362	1.488	0.628	1.309	0.986	0.796
1057	chr10	18895999	18906803	+	0	NA	intron (NM_182543, intron 5 of 10)	intron (NM_182543, intron 5 of 10)	39165	NM_182543	221078	Hs.396175	NM_182543	ENSG00000241058	NSUN6	4933414E04Rik|ARL5B-AS1|NOPD1	NOP2/Sun RNA methyltransferase family member 6	protein-coding	nan	1.006	0.816	0.721	0.457	0.222	0.119	0.903	0.373	0.232	0.173	0.397	0.731	0.059	0.083	0.430	0.450	0.288	0.487	0.240	0.304	6.388	2.900	0.244	0.183	1.012	1.451	1.704	1.537	0.248	0.186	0.136	0.164	0.217	0.365	0.348	0.879	0.618	0.366	0.067	0.057	0.026	0.073	0.119	0.397	0.073	1.240	0.018	0.140
5375	chr3	53163463	53204862	+	0	NA	Intergenic	Intergenic	-11061	NM_212539	5580	Hs.155342	NM_006254	ENSG00000163932	PRKCD	ALPS3|CVID9|MAY1|PKCD|nPKC-delta	protein kinase C delta	protein-coding	1.193	1.290	nan	0.496	0.446	0.223	0.191	0.418	0.095	0.235	0.110	0.402	0.976	0.246	0.065	0.784	1.097	1.150	1.583	0.912	0.872	1.233	0.545	1.160	1.156	0.334	0.621	2.366	3.034	nan	0.816	0.850	0.952	0.475	0.512	0.589	0.847	0.780	0.543	0.368	0.251	0.118	0.121	0.191	0.402	0.092	0.342	0.488	0.140
3748	chr18	38843654	38856913	+	0	NA	Intergenic	Intergenic	250278	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA	nan	0.770	0.686	0.154	7.662	4.267	0.562	0.046	0.085	0.531	0.368	0.561	0.301	0.034	0.064	0.577	0.393	0.333	0.293	1.087	1.066	6.289	2.549	0.102	0.117	0.539	0.593	nan	0.904	0.325	0.177	0.101	0.205	1.449	1.004	0.312	0.540	1.270	1.199	0.104	0.327	0.169	0.276	0.562	0.561	0.044	0.336	0.022	0.019
6785	chr6	44820161	44829976	+	0	NA	intron (NM_003599, intron 10 of 10)	intron (NM_003599, intron 10 of 10)	-305450	NR_134609	105375075	Hs.123393	NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA	1.135	0.999	0.930	0.163	0.604	0.228	0.177	0.580	0.098	0.334	0.177	0.280	0.728	0.055	0.152	0.578	0.415	0.259	0.487	0.715	0.829	0.130	0.061	0.341	0.305	0.537	0.648	0.554	nan	0.316	0.172	0.477	0.937	2.251	1.941	0.437	0.919	1.201	0.765	5.919	1.269	0.703	0.057	0.177	0.280	0.023	0.021	0.766	0.153
5815	chr3	197675525	197679913	+	0	NA	promoter-TSS (NM_001323030)	promoter-TSS (NM_001323030)	624	NM_001316311	6165	Hs.529631	NM_000996	ENSG00000182899	RPL35A	DBA5|L35A	ribosomal protein L35a	protein-coding	nan	3.417	2.572	4.998	5.444	2.941	2.556	3.235	0.367	2.142	1.274	2.709	nan	3.164	0.166	4.487	4.688	6.387	9.682	8.261	8.487	13.001	10.453	16.725	18.389	4.868	6.787	12.210	19.000	14.274	12.876	6.252	8.049	6.086	6.673	11.820	8.105	4.539	2.945	2.550	1.617	0.603	1.230	2.556	2.709	1.263	1.204	1.121	1.784
1923	chr12	46116875	46129226	+	0	NA	promoter-TSS (NM_152641)	promoter-TSS (NM_152641)	-442	NM_001347839	196528	Hs.317304	NM_152641	ENSG00000189079	ARID2	BAF200|p200	AT-rich interaction domain 2	protein-coding	5.145	nan	3.346	4.520	5.350	3.077	3.568	2.622	0.300	2.111	1.660	5.396	4.654	2.859	0.141	5.941	7.075	6.764	7.863	11.013	9.960	6.250	3.488	19.245	19.603	4.120	4.723	5.617	9.435	7.430	7.875	3.761	7.983	5.742	5.730	7.230	5.857	2.550	1.356	4.466	5.474	1.538	2.759	3.568	5.396	1.340	2.377	3.181	2.500
162	chr1	27623436	27636742	+	0	NA	intron (NM_015023, intron 13 of 15)	intron (NM_015023, intron 13 of 15)	-18547	NM_032125	84065	Hs.469171	NM_032125	ENSG00000186501	TMEM222	C1orf160	transmembrane protein 222	protein-coding	1.463	2.033	nan	0.751	0.615	0.253	0.738	0.191	0.169	0.437	0.210	0.190	5.263	0.115	0.120	0.609	1.094	0.301	0.665	2.631	3.057	0.353	0.151	0.496	0.568	2.878	4.163	2.601	3.501	2.070	1.770	0.347	0.485	0.549	0.423	0.917	2.033	1.817	0.817	7.579	2.882	0.143	0.212	0.738	0.190	0.621	0.496	0.037	0.539
433	chr1	107832296	107839271	+	0	NA	intron (NM_001330665, intron 2 of 6)	L1M5|LINE|L1	145092	NM_001113228	22854	Hs.133046	NM_014917	ENSG00000162631	NTNG1	Lmnt1	netrin G1	protein-coding	1.607	nan	nan	0.125	0.340	0.183	0.220	0.118	0.107	0.068	0.035	0.017	0.513	0.016	0.090	0.321	0.131	0.244	0.162	0.317	nan	0.496	0.267	0.240	0.223	6.499	6.429	nan	nan	0.450	0.316	0.114	0.161	0.661	0.472	0.407	nan	0.400	0.385	0.036	0.103	0.163	0.102	0.220	0.017	0.180	0.029	0.084	0.196
880	chr1	223814790	223841204	+	0	NA	intron (NM_001143962, intron 2 of 16)	MIRb|SINE|MIR	25439	NM_001143962	388743	Hs.291487	NM_001143962	ENSG00000203697	CAPN8	nCL-2	calpain 8	protein-coding	0.932	nan	1.054	0.142	0.437	0.188	1.885	0.097	0.128	0.208	0.174	0.131	1.096	0.062	0.075	0.499	0.524	0.667	0.936	1.038	nan	0.597	0.215	0.407	0.460	0.305	0.562	1.960	2.291	0.456	0.344	0.114	0.216	0.229	0.244	0.403	1.059	3.002	1.590	0.131	0.175	0.015	0.063	1.885	0.131	0.080	1.338	0.034	0.229
6095	chr4	182709504	182732289	+	0	NA	Intergenic	Intergenic	344772	NR_125905	90768	Hs.175465	NR_027107		LOC90768	-	uncharacterized LOC90768	ncRNA	nan	1.018	nan	0.039	1.693	0.910	0.194	0.066	0.071	0.515	0.301	0.349	0.164	0.528	0.115	0.215	0.184	0.604	0.705	1.516	1.598	11.570	5.027	0.128	0.129	0.113	0.154	0.963	0.606	0.424	0.333	0.059	0.119	2.435	2.565	0.076	0.159	1.895	0.957	1.722	0.704	0.533	0.076	0.194	0.349	0.008	0.040	0.026	0.016
3461	chr17	54669969	54680544	+	0	NA	Intergenic	Intergenic	4196	NM_005450	9241	Hs.248201	NM_005450	ENSG00000183691	NOG	SYM1|SYNS1|SYNS1A	noggin	protein-coding	1.918	0.808	2.507	0.159	0.338	0.271	0.654	0.355	0.168	0.133	0.132	0.159	1.067	0.362	0.089	0.321	0.239	2.740	3.029	1.112	0.673	0.192	0.057	nan	0.192	0.661	1.080	nan	nan	1.380	2.066	0.135	0.213	0.087	0.142	5.566	6.359	0.200	0.216	0.084	0.078	0.045	1.028	0.654	0.159	0.183	0.010	0.038	2.229
5396	chr3	69118907	69144304	+	0	NA	Intergenic	FLAM_A|SINE|Alu	-2081	NM_003968	9039	Hs.154320	NM_003968	ENSG00000144744	UBA3	NAE2|UBE1C|hUBA3	ubiquitin like modifier activating enzyme 3	protein-coding	1.351	nan	1.890	0.751	0.436	0.194	0.349	0.776	0.107	0.252	0.149	0.574	1.721	0.465	0.080	0.595	0.761	1.014	1.535	1.013	1.047	1.043	0.388	0.532	0.527	0.883	1.245	0.737	1.009	1.176	0.929	0.549	1.043	0.309	0.334	2.012	nan	0.722	0.417	0.219	0.343	0.063	0.350	0.349	0.574	0.191	0.487	0.347	0.977
1008	chr10	5853048	5859965	+	0	NA	promoter-TSS (NM_001115156)	promoter-TSS (NM_001115156)	-994	NM_001494	2665	Hs.299055	NM_001494	ENSG00000057608	GDI2	HEL-S-46e|RABGDIB	GDP dissociation inhibitor 2	protein-coding	3.404	2.499	4.211	4.016	4.039	2.223	3.214	3.689	0.651	1.698	0.819	3.817	4.560	2.206	0.128	7.402	6.018	5.300	7.459	4.794	4.840	9.172	5.209	7.521	7.741	3.985	4.785	4.830	8.893	3.151	3.161	3.516	4.997	2.630	3.214	5.452	3.986	2.121	1.338	1.891	2.417	0.524	1.761	3.214	3.817	0.589	1.645	1.439	1.785
4530	chr2	143694211	143713387	+	0	NA	intron (NM_001199241, intron 5 of 14)	AluJb|SINE|Alu	68604	NM_001199241	8942	Hs.470126	NM_003937	ENSG00000115919	KYNU	KYNUU	kynureninase	protein-coding	0.587	nan	0.706	0.083	0.172	0.059	0.084	0.445	0.135	0.057	0.080	0.053	0.320	0.029	0.057	0.336	0.228	5.705	5.553	0.206	0.253	0.072	0.069	0.262	0.203	0.214	0.355	0.216	0.220	0.330	0.150	0.141	0.204	0.039	0.047	0.362	0.746	0.178	0.213	0.006	0.009	0.005	0.041	0.084	0.053		0.010	0.057	0.077
3022	chr16	2052661	2073177	+	0	NA	Intergenic	AluSx1|SINE|Alu	-3097	NM_178167	90850	Hs.343828	NM_178167	ENSG00000167962	ZNF598	-	zinc finger protein 598	protein-coding	2.197	nan	2.903	1.099	0.758	0.474	1.309	0.464	0.165	0.774	0.397	0.957	2.062	0.864	0.099	1.657	1.413	0.669	1.053	1.393	1.363	nan	1.017	1.881	1.787	1.307	nan	1.562	2.133	2.889	3.511	0.588	0.823	1.287	1.518	2.485	3.764	1.491	1.031	0.721	1.757	0.245	0.475	1.309	0.957	0.666	0.910	0.180	1.379
7221	chr7	27134606	27157790	+	0	NA	3' UTR (NM_030661, exon 3 of 3)	3' UTR (NM_030661, exon 3 of 3)	-3804	NM_006735	3199	Hs.445239	NM_006735	ENSG00000105996	HOXA2	HOX1K|MCOHI	homeobox A2	protein-coding	2.211	1.373	1.104	0.308	0.912	0.547	0.503	0.240	0.035	0.531	0.325	0.560	1.407	2.695	0.169	12.954	18.729	6.530	nan	1.152	1.252	1.206	0.388	2.027	1.981	1.222	1.835	1.630	1.686	1.177	1.104	3.845	8.003	2.455	1.692	0.349	nan	0.985	0.585	0.453	0.845	1.071	1.542	0.503	0.560	0.169	0.018	3.092	0.225
4297	chr2	39365715	39370591	+	0	NA	Intergenic	AluSz|SINE|Alu	-20549	NM_005633	6654	Hs.709893	NM_005633	ENSG00000115904	SOS1	GF1|GGF1|GINGF|HGF|NS4	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0.976	nan	nan	0.184	0.306	0.113	0.369	1.271	0.174	0.118	0.136	0.319	0.422	0.200	0.083	4.467	3.232	9.830	7.807	0.300	0.452	0.593	0.249	1.205	nan	0.365	0.386	0.352	0.315	nan	0.191	4.719	5.872	0.085	0.103	0.292	0.770	0.340	0.610	0.077	0.126	0.020	0.131	0.369	0.319	0.019	0.021	1.904	0.176
1401	chr11	45531233	45541971	+	0	NA	Intergenic	Intergenic	143654	NR_122071	399886	Hs.559970	NR_122071	ENSG00000255267	LOC399886	-	uncharacterized LOC399886	ncRNA	nan	0.762	0.557	0.125	0.382	0.209	0.190	0.064	0.030	0.073	0.068	0.093	0.478	0.041	0.115	0.516	0.458	0.139	0.290	0.415	0.352	0.212	0.084	0.163	0.149	0.559	1.001	0.107	0.164	3.214	3.189	0.224	0.350	0.257	0.288	0.574	nan	0.574	0.504	0.021	0.084	0.096	0.225	0.190	0.093	2.097	0.067	0.055	0.296
4305	chr2	42389081	42400540	+	0	NA	intron (NR_110584, intron 1 of 3)	MLT1J2|LTR|ERVL-MaLR	-1668	NM_001145076	27436	Hs.713173	NM_019063	ENSG00000143924	EML4	C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120	echinoderm microtubule associated protein like 4	protein-coding	3.008	nan	2.619	0.771	0.875	0.531	0.682	1.126	0.117	0.682	0.499	0.658	2.301	0.795	0.118	0.917	0.988	1.034	1.587	nan	1.387	2.209	0.805	3.099	3.165	2.267	2.648	1.939	2.431	4.622	4.734	0.618	1.305	0.558	0.593	3.276	nan	nan	0.879	0.299	1.019	0.092	0.361	0.682	0.658	0.996	0.702	0.275	2.783
5163	chr21	45788549	45801451	+	0	NA	intron (NR_038257, intron 5 of 31)	AluJb|SINE|Alu	21516	NM_003307	7226	Hs.369759	NM_003307	ENSG00000142185	TRPM2	EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7	transient receptor potential cation channel subfamily M member 2	protein-coding	nan	0.551	0.841	0.075	0.399	0.174	0.204	0.058	0.075	0.098	0.063	0.169	1.379	0.075	0.049	0.341	0.180	0.204	0.249	0.961	0.796	nan	0.242	0.218	0.238	0.113	nan	0.162	0.280	0.614	0.379	0.222	0.342	0.179	0.240	0.105	0.231	0.828	0.591	4.257	0.669	0.022	0.059	0.204	0.169	0.149	0.173	0.092	0.088
4289	chr2	37994184	38031154	+	0	NA	Intergenic	Intergenic	44185	NR_110011	101929559	Hs.468200	NR_110011	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA	1.311	nan	nan	0.497	0.609	0.301	0.704	1.640	0.158	0.382	0.311	2.040	1.771	0.065	0.121	0.304	0.173	0.950	3.800	1.091	1.222	1.420	0.291	0.452	nan	1.713	2.293	1.881	1.361	nan	0.373	0.172	0.316	0.851	0.990	0.344	1.065	1.771	0.927	0.609	0.123	0.305	0.202	0.704	2.040	0.215	1.632	0.235	0.444
902	chr1	228100868	228114796	+	0	NA	Intergenic	Intergenic	21552	NR_049806	100847072		NR_049806	ENSG00000264483	MIR5008	-	microRNA 5008	ncRNA	2.472	nan	2.068	0.383	0.251	0.150	0.938	0.092	0.034	0.316	0.367	0.129	1.785	0.054	0.095	0.474	0.540	0.339	0.418	0.793	nan	1.286	0.541	0.468	0.581	0.154	0.310	1.523	2.686	2.496	2.891	0.187	0.268	1.556	0.701	1.047	1.610	0.894	0.492	6.051	0.116	0.363	0.086	0.938	0.129	0.951	0.205	0.036	0.637
827	chr1	206857791	206888172	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	14616	NM_004759	9261	Hs.643566	NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	mitogen-activated protein kinase-activated protein kinase 2	protein-coding	2.116	1.339	6.784	1.900	1.733	0.997	1.870	0.984	0.143	0.939	0.373	3.076	1.976	0.258	0.104	1.132	1.607	1.322	2.148	6.798	5.863	3.510	0.950	nan	nan	1.543	2.319	2.247	2.625	1.494	1.724	0.329	0.393	1.504	1.811	1.006	2.113	2.067	1.190	0.736	1.880	0.299	1.567	1.870	3.076	0.444	0.714	0.055	0.695
266	chr1	43584443	43590352	+	0	NA	Intergenic	L1MB3|LINE|L1	-26197	NM_001101376	440585	Hs.657614	NM_001101376	ENSG00000186973	FAM183A	-	family with sequence similarity 183 member A	protein-coding	nan	0.980	nan	1.698	2.131	1.162	0.907	0.757	0.108	1.520	1.139	4.946	7.385	1.471	0.097	1.691	2.755	0.288	0.431	4.010	4.907	2.973	1.034	6.999	7.345	2.624	nan	12.166	15.797	0.892	0.828	3.998	nan	1.959	2.169	0.681	1.174	2.773	1.528	3.535	3.469	0.272	0.255	0.907	4.946	0.116	0.990	4.188	0.315
7770	chr8	82244088	82292410	+	0	NA	Intergenic	Intergenic	75531	NM_001444	2171	Hs.408061	NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding	1.367	nan	nan	1.053	0.922	0.572	0.198	0.130	0.080	0.210	0.153	0.068	1.138	0.037	0.068	0.406	0.328	0.478	0.375	0.740	0.796	1.093	0.341	0.269	0.249	5.420	6.008	nan	3.283	0.483	0.317	0.262	0.423	0.327	0.510	0.576	1.982	1.995	1.253	0.673	0.201	0.046	0.067	0.198	0.068	0.032	0.676	0.170	0.374
3128	chr16	46447655	46456540	+	0	NA	Intergenic	HSATII|Satellite|Satellite	150912	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo	4.782	5.831	4.218	0.506	1.080	0.648	0.819	0.665	5.152	0.602	1.385	0.297	1.931	0.355	1.590	1.168	0.513	0.248	0.373	0.818	1.457	0.528	0.369	0.559	0.607	0.986	1.331	0.883	1.051	1.547	0.428	0.431	1.077	0.335	0.602	0.570	1.255	0.342	0.507	0.193	0.414	0.277	0.242	0.819	0.297	0.122	0.171	0.371	0.473
6979	chr6	134903968	134907730	+	0	NA	Intergenic	Intergenic	-44706	NR_125855	101928304	Hs.555076	NR_125855		LOC101928304	-	uncharacterized LOC101928304	ncRNA	0.753	1.335	0.866	1.709	0.756	0.322	0.710	0.121	0.131	0.465	0.130	0.322	1.339	1.956	0.196	0.471	0.456	0.475	0.745	0.521	0.565	11.504	13.009	0.205	0.251	0.196	0.283	0.873	1.273	0.514	0.223	0.165	0.157	0.337	0.237	0.426	nan	1.204	0.994	0.059	0.094	0.051	0.085	0.710	0.322	0.129	0.271	0.036	0.164
1624	chr11	110299819	110303113	+	0	NA	intron (NM_004109, intron 1 of 3)	intron (NM_004109, intron 1 of 3)	805	NM_004109	2230	Hs.744	NM_004109	ENSG00000137714	FDX1	ADX|FDX|LOH11CR1D	ferredoxin 1	protein-coding	3.842	2.463	2.920	3.147	3.040	1.407	4.023	1.253		1.855	1.127	4.942	11.034	4.227	0.166	17.073	20.660	4.759	7.837	13.247	11.506	6.261	3.151	6.510	6.708	5.300	nan	4.859	8.414	5.059	6.293	5.663	12.495	6.251	5.254	2.863	3.059	2.975	1.907	3.175	1.922	1.337	2.852	4.023	4.942	0.415	2.250	2.676	0.769
7297	chr7	57545895	57556181	+	0	NA	Intergenic	HSATII|Satellite|Satellite	41155	NM_001159279	441234	Hs.533121	NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding	nan	3.957	3.559	0.476	1.105	0.875	0.837	0.468	5.651	0.605	1.566	0.307	1.577	0.296	1.654	1.156	0.490	0.362	0.532	0.876	1.324	0.475	0.347	0.725	0.512	1.089	1.453	0.695	0.823	1.468	0.450	0.564	1.047	0.427	0.688	0.616	0.997	0.361	0.674	0.223	0.449	0.275	0.232	0.837	0.307	0.196	0.175	0.425	0.413
4440	chr2	97592458	97601793	+	0	NA	intron (NM_001122646, intron 8 of 16)	intron (NM_001122646, intron 8 of 16)	12282	NR_110209	101927053	Hs.677537	NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA	1.832	0.864	1.987	1.135	0.849	0.361	0.451	0.071	0.123	3.283	1.501	2.779	5.707	0.082	0.103	1.593	1.636	0.343	0.768	5.549	4.060	3.018	0.672	1.081	1.282	2.325	2.872	2.907	2.705	0.750	0.823	0.587	1.093	1.396	1.212	1.065	1.678	1.401	0.865	5.415	1.993	0.469	0.137	0.451	2.779	0.740	1.523	0.465	0.671
2892	chr15	59031021	59036490	+	0	NA	intron (NM_001320570, intron 1 of 14)	intron (NM_001320570, intron 1 of 14)	8422	NM_001110	102	Hs.172028	NM_001110	ENSG00000137845	ADAM10	AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz	ADAM metallopeptidase domain 10	protein-coding	0.797	0.798	0.940	0.133	0.442	0.123	0.140	0.193		0.105	0.071	0.312	0.430	0.040	0.110	1.606	1.360	11.134	4.627	0.713	0.942	0.231	0.087	2.661	2.752	0.556	0.874	0.563	0.687	1.646	0.805	0.847	1.559	0.137	0.166	0.715	1.371	0.190	0.229	0.061	0.078	0.018	0.058	0.140	0.312			1.026	0.337
7911	chr8	125051151	125059329	+	0	NA	intron (NM_001039112, intron 20 of 40)	intron (NM_001039112, intron 20 of 40)	-2217	NR_040044	439941	Hs.683919	NM_001038706	ENSG00000181171	FER1L6-AS1	C8orf54	FER1L6 antisense RNA 1	ncRNA	nan	nan	nan	0.295	0.681	0.235	1.844	0.194	0.020	0.057	0.070	0.292	nan	0.105	0.081	0.637	0.831	0.342	0.697	3.911	3.327	1.850	0.530	nan	nan	0.185	0.356	0.702	0.998	0.502	0.340	0.339	0.273	1.291	1.117	0.503	1.357	0.473	0.572	7.389	1.656	0.315	0.098	1.844	0.292	0.130	0.208	0.109	0.534
1695	chr11	119551344	119611650	+	0	NA	intron (NM_203286, intron 1 of 5)	intron (NM_203286, intron 1 of 5)	17938	NM_203286	5818	Hs.334846	NM_002855	ENSG00000110400	NECTIN1	CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1	nectin cell adhesion molecule 1	protein-coding	1.072	0.730	0.919	0.650	0.740	0.474	1.179	0.046	0.056	0.478	0.248	0.928	2.130	0.380	0.098	1.219	nan	0.462	1.009	1.927	1.755	2.197	0.778	0.648	0.646	0.782	nan	2.542	2.841	1.658	1.982	2.126	3.245	0.585	0.531	0.825	2.539	1.354	0.919	2.890	0.905	0.145	1.161	1.179	0.928	0.353	0.827	1.926	0.576
6950	chr6	125373294	125383009	+	0	NA	intron (NR_104440, intron 3 of 6)	intron (NR_104440, intron 3 of 6)	73641	NR_104440	154214	Hs.12876	NM_152553	ENSG00000146373	RNF217	C6orf172|IBRDC1|OSTL|dJ84N20.1	ring finger protein 217	protein-coding	1.099	1.081	1.083	0.136	0.216	0.066	0.224	0.292	0.017	0.097	0.110	0.062	0.364	0.034	0.119	0.504	0.351	0.474	0.718	0.293	0.448	0.712	0.373	0.318	0.304	0.448	0.558	0.212	0.256	2.363	1.229	0.115	0.227	0.729	0.780	3.183	8.659	0.255	0.276	0.075	0.092	0.118	0.036	0.224	0.062	0.021	0.042	0.040	0.832
2378	chr13	95063047	95071656	+	0	NA	Intergenic	Intergenic	64585	NM_001129889	1638	Hs.301865	NM_001922	ENSG00000080166	DCT	TRP-2|TYRP2	dopachrome tautomerase	protein-coding	2.303	3.999	2.085	0.163	2.975	1.387	3.735	0.166	0.075	0.297	0.200	0.944	2.063	0.025	0.095	0.560	0.530	0.305	0.607	2.427	2.154	7.379	2.055	0.107	0.159	0.720	0.975	1.242	1.473	2.018	1.907	0.349	0.610	7.924	8.459	5.824	11.591	1.239	0.687	3.535	0.880	2.950	1.699	3.735	0.944	0.395	0.201	0.196	2.470
2983	chr15	90539813	90553622	+	0	NA	intron (NM_198526, intron 1 of 4)	intron (NM_198526, intron 1 of 4)	1994	NM_198526	374655	Hs.459311	NM_198526	ENSG00000140548	ZNF710	-	zinc finger protein 710	protein-coding	nan	nan	nan	1.001	1.884	0.951	1.316	0.934	0.164	1.040	0.592	3.683	3.765	1.067	0.101	2.073	2.897	1.819	2.247	2.491	1.930	nan	0.438	8.854	9.173	0.812	1.242	3.673	4.154	nan	1.659	1.620	2.863	0.914	0.674	1.139	nan	0.756	0.498	0.981	1.678	0.219	0.571	1.316	3.683	0.525	0.867	0.851	0.313
6665	chr6	23444598	23456570	+	0	NA	Intergenic	Intergenic	-675830	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding	1.498	0.930	nan	1.020	0.893	0.327	0.709	0.341	0.108	0.196	0.149	3.496	nan	0.395	0.117	0.594	0.356	0.720	nan	4.613	5.153	nan	0.296	0.364	0.369	1.761	2.023	0.580	0.361	0.960	0.582	0.134	0.240	0.449	0.336	0.451	1.179	1.169	0.763	0.075	0.119	0.127	0.066	0.709	3.496	0.275	0.212	0.049	0.249
6086	chr4	182174901	182192865	+	0	NA	Intergenic	Intergenic	-103581	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA	nan	0.725	nan	0.039	2.102	1.398	0.114	0.041	0.027	1.263	0.647	0.096	0.158	0.302	0.115	0.152	0.123	0.154	0.230	0.334	0.390	4.944	2.147	0.133	0.098	0.134	0.157	0.370	0.277	0.409	0.147	0.103	0.115	3.844	3.170	0.095	0.124	0.461	0.441	2.509	2.185	0.728	0.278	0.114	0.096	0.005	0.040	0.028	0.041
668	chr1	174127415	174139164	+	0	NA	intron (NM_014857, intron 1 of 20)	intron (NM_014857, intron 1 of 20)	4737	NM_014857	9910	Hs.585378	NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding	nan	nan	nan	0.890	0.886	0.326	0.877	0.987	0.234	0.791	0.491	1.099	2.707	0.978	0.113	1.836	2.187	2.111	2.960	nan	2.197	2.028	0.618	2.384	2.433	5.202	5.436	1.736	2.315	1.031	1.021	1.142	2.890	0.733	0.514	1.191	nan	1.288	0.933	0.550	1.611	0.098	0.479	0.877	1.099	0.223	0.848	0.953	0.401
5711	chr3	178614095	178621173	+	0	NA	Intergenic	Intergenic	-39441	NR_126561	104797538	Hs.478363	NR_126560		KCNMB2-AS1	-	KCNMB2 antisense RNA 1	ncRNA	1.728	1.352	1.024	1.895	8.322	4.376	0.617	0.187	0.267	3.477	2.252	3.435	1.731	0.031	0.091	0.564	0.502	0.418	0.316	3.920	4.158	12.953	4.649	0.311	0.394	0.402	0.556	3.767	3.539	0.737	0.442	0.270	0.245	3.872	4.064	0.414	0.942	2.860	1.386	0.117	0.915	1.346	3.639	0.617	3.435	0.222	1.189	0.139	0.226
910	chr1	230312346	230333475	+	0	NA	intron (NM_001291866, intron 2 of 15)	intron (NM_001291866, intron 2 of 15)	119968	NM_004481	2590	Hs.743964	NM_004481	ENSG00000143641	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	1.162	3.530	1.432	2.910	4.492	2.293	0.551	0.305	0.121	2.243	0.945	2.828	2.365	0.061	0.124	0.525	0.614	0.533	0.701	2.453	2.493	nan	3.723	0.493	0.504	1.028	1.467	nan	5.974	0.651	0.535	0.298	0.411	0.579	0.838	0.511	1.230	nan	1.514	0.835	0.921	0.150	0.094	0.551	2.828	0.155	3.093	0.230	0.323
3463	chr17	55107851	55132863	+	0	NA	Intergenic	(TTCC)n|Simple_repeat|Simple_repeat	-2482	NR_002818	376412	Hs.132299	NR_002818	ENSG00000261192	RNF126P1	-	ring finger protein 126 pseudogene 1	pseudo	0.944	2.152	0.932	1.183	2.027	1.109	1.664	0.245	0.122	0.259	0.211	3.075	8.321	0.030	0.116	0.544	0.524	0.335	0.969	1.443	1.474	1.496	0.481	nan	0.621	0.395	0.654	nan	nan	0.723	0.462	0.282	0.440	0.569	0.491	0.294	0.441	1.072	0.675	3.567	4.364	0.118	1.736	1.664	3.075	0.112	0.032	0.143	0.074
7863	chr8	106742237	106793371	+	0	NA	intron (NM_012082, intron 5 of 7)	intron (NM_012082, intron 5 of 7)	304927	NR_125797	102723356	Hs.571413	NR_125796		ZFPM2-AS1	-	ZFPM2 antisense RNA 1	ncRNA	1.040	nan	nan	0.155	0.288	0.129	0.055	0.291	0.110	0.046	0.081	0.070	0.857	0.106	0.103	0.319	0.199	0.320	0.331	0.344	0.415	nan	0.171	0.424	0.446	4.906	nan	0.178	nan	nan	0.663	0.135	0.273	0.069	0.096	0.490	nan	0.717	0.560	0.038	0.050	0.015	0.045	0.055	0.070	0.375	0.070	0.049	0.205
693	chr1	180916959	180946716	+	0	NA	Intergenic	Intergenic	49524	NM_020950	57710	Hs.734816	NM_020950	ENSG00000135835	KIAA1614	-	KIAA1614	protein-coding	nan	nan	6.099	0.396	0.286	0.152	0.949	0.340	0.113	1.013	0.520	0.748	1.054	0.164	0.083	0.597	0.943	0.719	1.164	1.029	nan	0.703	0.247	nan	0.762	1.547	2.460	0.887	1.012	0.544	0.619	1.467	1.943	1.949	2.008	0.409	nan	1.760	1.027	0.846	0.910	0.793	0.296	0.949	0.748	0.340	0.109	0.541	0.200
2701	chr14	78820004	78831894	+	0	NA	intron (NR_073547, intron 4 of 20)	intron (NR_073547, intron 4 of 20)	-44125	NM_004796	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding	1.100	1.056	0.624	0.060	0.388	0.189	0.611	0.099	0.082	0.090	0.131	0.176	1.913	0.109	0.136	0.269	0.144	0.093	0.123	0.378	0.440	0.468	0.176	0.182	0.221	0.398	0.592	0.375	nan	0.577	0.213	0.174	0.175	0.189	0.161	0.135	0.276	1.273	nan	5.132	1.184	0.055	0.382	0.611	0.176	0.049	0.008	0.121	0.052
4601	chr2	174822620	174832572	+	0	NA	intron (NM_001017371, intron 1 of 4)	intron (NM_001017371, intron 1 of 4)	1351	NM_001017371	6670	Hs.531587	NM_003111	ENSG00000172845	SP3	SPR2	Sp3 transcription factor	protein-coding	5.608	4.377	5.158	4.723	6.480	3.475	4.810	3.239	0.418	2.674	1.308	6.986	10.313	3.886	0.081	4.570	4.670	5.196	7.629	6.917	6.709	4.279	2.295	10.676	10.896	3.481	4.352	13.539	18.950	6.933	6.997	3.439	6.358	3.327	2.982	5.666	5.875	1.523	0.914	5.493	2.769	1.066	2.614	4.810	6.986	1.966	1.378	2.189	2.255
8305	chr9	133604330	133609592	+	0	NA	intron (NM_007313, intron 1 of 10)	L1ME3A|LINE|L1	17693	NM_007313	25	Hs.431048	NM_005157	ENSG00000097007	ABL1	ABL|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein-coding	nan	0.978	4.913	7.048	7.377	3.688	0.258	0.250	0.183	3.577	1.779	4.153	0.690	0.041	0.109	0.307	0.555	0.512	0.793	1.580	1.843	8.391	3.329	0.173	0.274	0.535	0.724	4.757	6.003	1.181	0.958	0.182	0.304	7.131	10.251	0.437	0.907	4.175	1.484	0.074	0.288	2.706	0.660	0.258	4.153	0.239	2.965	0.089	0.258
2309	chr13	52025048	52029118	+	0	NA	promoter-TSS (NR_103812)	promoter-TSS (NR_103812)	192	NM_012141	26512	Hs.439440	NM_012141	ENSG00000102786	INTS6	DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2	integrator complex subunit 6	protein-coding	6.977	nan	7.488	5.478	3.768	2.568	4.253	4.163	0.394	2.590	1.037	10.942	11.877	5.777	0.125	11.248	13.886	5.533	6.157	15.826	13.614	nan	3.724	14.235	13.363	3.660	4.613	7.549	11.387	9.948	11.261	5.915	12.977	4.716	4.022	12.435	nan	1.589	0.795	3.977	9.947	1.328	8.951	4.253	10.942	2.472	2.964	5.092	5.935
7341	chr7	79714352	79719693	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-47118	NM_002069	2770	Hs.134587	NM_002069	ENSG00000127955	GNAI1	Gi	G protein subunit alpha i1	protein-coding	nan	0.551	0.818	0.098	0.169	0.243	0.118	1.342	0.424	0.060	0.155	0.045	0.346	0.016	0.129	0.852	1.804	11.057	11.036	0.246	0.402	0.104	0.089	0.574	0.633	0.461	nan	0.244	nan	0.314	0.149	0.415	1.135	0.070	0.183	0.362	0.559	0.647	0.781	0.060	0.133	0.036	0.074	0.118	0.045		0.036	0.695	
8235	chr9	111518858	111530454	+	0	NA	Intergenic	L2b|LINE|L2	93619	NM_006686	10880	Hs.534390	NM_006686	ENSG00000148156	ACTL7B	Tact1	actin like 7B	protein-coding	0.888	0.983	nan	1.181	0.338	0.125	0.243	0.162	0.069	0.350	0.274	0.968	0.941	0.047	0.058	0.248	0.245	0.421	0.783	1.276	0.994	6.535	2.384	1.490	1.574	0.142	0.207	2.098	nan	0.690	0.431	0.212	0.252	1.457	0.937	0.279	0.676	nan	1.052	0.159	0.399	0.090	0.327	0.243	0.968	0.127	0.104	0.085	0.086
4348	chr2	52009514	52024214	+	0	NA	intron (NR_135237, intron 6 of 10)	MSTD|LTR|ERVL-MaLR	-580922	NR_135239	105374596		NR_135239	ENSG00000225444	LINC01867	-	long intergenic non-protein coding RNA 1867	ncRNA	1.094	nan	1.576	0.408	0.226	0.109	0.401	0.111	0.033	0.575	0.381	0.147	2.711	0.052	0.087	0.312	0.212	0.234	0.321	0.426	0.570	6.732	2.684	0.379	0.366	0.681	0.774	0.461	0.389	0.398	0.190	0.063	0.162	1.395	1.334	0.212	0.250	0.481	0.416	0.057	0.145	0.380	0.282	0.401	0.147	0.199	0.207	0.033	0.025
6823	chr6	56402087	56422438	+	0	NA	intron (NM_001144769, intron 55 of 96)	intron (NM_001144769, intron 55 of 96)	95432	NM_015548	667	Hs.604915	NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding	2.776	1.927	nan	0.693	0.748	0.287	4.294	1.020	0.143	1.043	0.593	0.141	1.435	0.579	0.140	1.045	1.192	3.758	3.713	1.573	1.500	4.221	1.682	0.660	0.805	1.816	2.413	2.426	3.281	2.233	1.946	0.616	1.192	1.434	1.893	3.461	5.536	1.676	1.004	0.671	0.965	0.295	0.744	4.294	0.141	0.153	1.012	0.297	1.817
4414	chr2	85120998	85135220	+	0	NA	Intergenic	Intergenic	-4654	NM_021103	9168	Hs.446574	NM_021103	ENSG00000034510	TMSB10	MIG12|TB10	thymosin beta 10	protein-coding	nan	1.828	nan	0.746	0.910	0.540	1.115	0.974	0.248	0.637	0.523	1.297	6.040	3.103	0.160	0.745	1.065	1.434	1.849	2.715	1.993	3.514	0.642	2.243	2.019	1.745	2.425	1.584	1.921	2.061	2.390	0.575	1.422	1.625	1.253	1.006	1.424	1.853	1.169	2.336	1.300	0.468	0.267	1.115	1.297	0.560	0.758	0.523	0.626
5065	chr21	18803696	18816065	+	0	NA	Intergenic	AluSq2|SINE|Alu	-1328	NR_037586	100505929	Hs.46707	NM_001005521	ENSG00000232560	LINC01549	C21orf37	long intergenic non-protein coding RNA 1549	ncRNA	1.161	0.924	nan	0.437	0.381	0.168	1.106	0.012	0.026	0.327	0.258	0.459	1.985	0.029	0.072	0.349	0.312	0.751	1.782	0.664	0.718	0.102	0.054	0.313	0.272	1.066	1.640	0.140	0.149	0.775	0.438	0.207	0.278	4.956	5.053	1.100	2.776	0.684	0.718	0.080	0.110	1.890	0.339	1.106	0.459	0.055		0.008	0.960
4859	chr20	14311848	14318379	+	0	NA	intron (NM_198391, intron 1 of 2)	intron (NM_198391, intron 1 of 2)	3200	NM_198391	23767	Hs.41296	NM_013281	ENSG00000125848	FLRT3	HH21	fibronectin leucine rich transmembrane protein 3	protein-coding	1.266	nan	1.230	0.312	0.365	0.248	0.803	1.737	0.148	0.136	0.306	0.184	0.606	0.116	0.067	0.879	0.734	1.953	2.892	0.674	0.684	5.063	1.372	11.549	11.949	6.628	7.264	0.702	1.215	3.043	2.109	0.281	0.579	2.315	2.186	1.729	2.882	0.888	0.735	0.009	0.014	0.260	0.111	0.803	0.184	0.182	0.292	0.075	2.002
6885	chr6	105388715	105409035	+	0	NA	Intergenic	Intergenic	-6048	NM_001004317	389421	Hs.23616	NM_001004317	ENSG00000187772	LIN28B	CSDD2	lin-28 homolog B	protein-coding	0.764	nan	nan	0.153	0.185	0.072	0.176	0.067	0.055	0.786	0.592	0.601	0.445	0.609	0.138	9.461	9.221	0.114	0.150	0.273	nan	0.307	0.105	0.436	0.478	3.719	4.135	1.084	1.495	nan	1.785	0.534	0.881	3.156	3.017	0.322	0.569	0.249	0.235	0.030	0.236	0.487	0.357	0.176	0.601	0.024	0.650	0.459	0.126
2558	chr14	36781417	36793045	+	0	NA	intron (NM_016586, intron 1 of 8)	intron (NM_016586, intron 1 of 8)	2651	NM_016586	51562	Hs.368647	NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding	2.623	5.736	1.259	5.049	2.637	1.223	1.966	0.837	0.111	1.966	0.901	1.393	10.540	0.514	0.098	0.589	0.538	1.563	1.963	4.225	4.218	1.563	0.780	2.707	2.767	1.897	2.270	4.151	5.020	3.289	2.484	0.648	1.029	1.288	1.989	1.260	1.578	2.396	0.904	8.748	5.869	0.311	0.486	1.966	1.393	0.234	1.062	0.222	0.287
5923	chr4	67947622	67952430	+	0	NA	Intergenic	Intergenic	337692	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA	nan	nan	0.518	0.297	0.293	0.267	0.481	0.063	0.133	0.170	0.144	0.129	0.571	0.044	0.087	1.821	1.295	11.856	7.751	0.261	0.266	0.209	0.113	1.166	1.171	0.808	1.055	0.536	0.591	0.337	0.107	0.363	1.401	0.077	0.063	0.205	0.344	0.377	0.339	0.023	0.111		0.050	0.481	0.129		0.041	0.253	0.025
4851	chr20	11185221	11218936	+	0	NA	Intergenic	Intergenic	51953	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA	0.600	nan	0.614	0.138	0.352	0.205	0.300	2.110	0.234	0.129	0.166	0.142	0.325	2.353	0.098	0.629	0.322	0.564	1.807	0.475	0.548	0.743	0.244	0.213	0.259	0.771	1.116	0.538	0.503	0.477	0.217	0.211	0.245	0.137	0.182	0.170	0.258	0.642	0.611	0.028	0.103	0.020	0.035	0.300	0.142	0.092	0.056	0.036	0.033
1085	chr10	28952826	28980003	+	0	NA	promoter-TSS (NM_012342)	promoter-TSS (NM_012342)	-10	NM_012342	25805	Hs.533336	NM_012342	ENSG00000095739	BAMBI	NMA	BMP and activin membrane bound inhibitor	protein-coding	1.008	0.922	1.107	0.626	1.244	0.596	0.329	0.191	0.171	0.373	0.180	1.354	2.646	0.124	0.088	0.258	0.176	4.817	6.606	1.739	1.526	1.646	0.484	0.845	0.839	0.119	0.241	0.710	1.260	0.387	0.356	0.102	0.263	0.869	0.950	0.506	0.863	0.859	0.499	0.107	0.344	0.254	0.359	0.329	1.354	0.075	0.500	0.029	0.086
1714	chr11	125233719	125253401	+	0	NA	intron (NM_022062, intron 5 of 12)	intron (NM_022062, intron 5 of 12)	-121550	NM_001301851	403312	Hs.450611	NM_203452		LOC403312	-	putative uncharacterized protein MGC39545	protein-coding	1.043	1.177	0.760	0.076	0.147	0.130	1.689	0.052	0.008	0.032	0.129	0.036	0.315	0.072	0.097	0.844	1.334	0.329	0.339	0.332	0.323	0.115	0.089	0.460	0.482	0.204	0.355	0.118	0.151	1.207	1.141	0.729	1.096	0.400	0.325	2.098	5.404	0.359	0.290	0.203	0.036	0.116	0.291	1.689	0.036	0.169	0.015	0.251	1.833
8168	chr9	79622818	79634906	+	0	NA	Intergenic	Intergenic	-5709	NM_001013735	442425	Hs.553843	NM_001013735	ENSG00000204612	FOXB2	bA159H20.4	forkhead box B2	protein-coding	nan	nan	nan	1.154	0.482	0.293	1.724	0.060	0.041	0.156	0.152	6.533	1.740	0.046	0.079	0.162	0.067	0.588	nan	1.073	nan	1.327	0.303	0.233	0.225	0.115	0.189	0.567	0.743	0.169	0.086	0.072	0.146	0.732	0.558	0.057	0.168	1.677	0.986	0.220	0.100	0.071	0.098	1.724	6.533	0.032	0.369	0.035	0.051
1403	chr11	45774095	45783803	+	0	NA	Intergenic	LTR79|LTR|ERVL	-14034	NR_027134	374387	Hs.632142	NM_199137	ENSG00000205106	DKFZp779M0652	-	uncharacterized DKFZp779M0652	ncRNA	nan	0.940	0.424	0.147	0.216	0.099	0.260	0.077	0.149	0.081	0.076	0.086	0.330	0.033	0.098	1.427	1.341	10.480	9.195	0.395	0.536	0.604	0.178	0.215	0.194	0.280	0.540	0.204	0.208	0.511	0.301	0.328	0.477	0.157	0.136	0.249	nan	0.798	0.579	0.035	0.101	0.029		0.260	0.086	0.092	0.041	0.095	0.062
1497	chr11	70340547	70353570	+	0	NA	intron (NM_012309, intron 16 of 22)	intron (NM_012309, intron 16 of 22)	102446	NM_138565	2017	Hs.596164	NM_005231	ENSG00000085733	CTTN	EMS1	cortactin	protein-coding	nan	1.053	1.635	0.027	0.894	0.369	1.707	0.075	0.024	0.602	0.322	2.932	3.926	0.075	0.078	1.988	3.921	0.256	0.518	11.024	9.281	2.621	0.625	0.690	0.716	0.439	0.885	5.622	5.908	0.973	1.561	0.792	1.180	1.103	0.796	0.425	0.643	2.775	2.094	2.764	2.770	0.210	0.030	1.707	2.932	0.968	0.413	0.283	0.285
497	chr1	145469445	145475328	+	0	NA	5' UTR (NM_001039888, exon 3 of 4)	5' UTR (NM_001039888, exon 3 of 4)	1878	NM_001039888	284615	Hs.620591	NM_001039888	ENSG00000272031	ANKRD34A	ANKRD34	ankyrin repeat domain 34A	protein-coding	3.447	nan	2.668	1.625	1.217	0.593	2.085	1.983	0.138	1.452	0.791	1.867	15.300	3.181	0.113	2.452	4.219	1.703	2.546	4.943	4.692	5.750	1.311	0.975	1.195	2.386	3.286	2.879	3.500	2.502	2.077	2.277	3.843	1.344	1.531	3.507	5.644	2.688	1.394	1.729	7.305	0.193	0.743	2.085	1.867	0.954	4.333	1.980	1.271
4236	chr2	16878107	16958379	+	0	NA	Intergenic	Intergenic	-71109	NM_030797	81553	Hs.467769	NM_030797	ENSG00000197872	FAM49A	-	family with sequence similarity 49 member A	protein-coding	0.576	0.441	0.532	0.082	0.210	0.144	0.168	0.065	0.044	0.125	0.121	0.048	0.587	0.024	0.095	0.940	0.859	1.012	0.670	0.274	0.309	0.580	0.293	0.482	0.502	0.227	0.370	0.322	nan	0.446	0.208	14.956	17.269	0.047	0.073	0.259	nan	0.381	0.467	0.039	0.173	0.016	0.048	0.168	0.048	0.022	0.061	15.317	0.054
4615	chr2	177753873	177762756	+	0	NA	Intergenic	Intergenic	255832	NR_110599	102724224	Hs.663125	NR_110599	ENSG00000224577	LINC01117	-	long intergenic non-protein coding RNA 1117	ncRNA	0.856	0.838	0.845	0.834	7.301	3.852	0.227	0.101	0.109	0.872	0.280	0.274	0.277		0.093	0.330	0.185	0.115	0.272	0.436	0.488	5.156	4.630	0.285	0.244	0.189	0.353	5.143	4.069	0.284	0.206	0.108	0.210	0.441	0.255	0.386	0.762	1.540	1.058	0.019	0.061	0.076	0.018	0.227	0.274	0.033	2.550	0.045	0.093
169	chr1	28968287	28976649	+	0	NA	Intergenic	AluSz|SINE|Alu	-2644	NR_004407	26824	Hs.640266	NR_004407	ENSG00000270103	RNU11	RNU11-1|U11	RNA, U11 small nuclear	snRNA	4.288	3.051	nan	5.982	3.843	1.606	3.200	2.033	0.617	1.835	1.155	1.735	7.999	3.300	0.172	7.100	7.043	5.590	7.890	8.897	8.656	5.862	3.979	11.988	13.068	5.675	6.569	5.502	8.111	7.821	7.841	6.235	6.894	3.259	3.545	6.560	8.521	3.802	2.093	4.597	3.627	0.363	1.347	3.200	1.735	1.054	1.948	2.121	2.863
6789	chr6	45665921	45684717	+	0	NA	Intergenic	L2a|LINE|L2	230015	NR_045674	53405	Hs.485489	NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding	1.221	0.815	0.758	0.074	0.332	0.176	0.285	0.881	0.095	0.075	0.091	0.168	0.396	0.069	0.102	0.722	0.614	2.485	7.367	0.317	0.359	0.120	0.094	0.616	0.733	0.127	0.227	0.385	nan	0.477	0.210	0.776	1.224	0.082	0.067	0.424	0.808	0.567	0.652	0.083	0.132	0.021	0.038	0.285	0.168	0.010	0.071	0.603	0.285
2579	chr14	46785143	46815382	+	0	NA	intron (NR_102702, intron 3 of 3)	intron (NR_102702, intron 3 of 3)	-140300	NR_102699	100506412	Hs.207545	NR_102699	ENSG00000258700	LINC00871	-	long intergenic non-protein coding RNA 871	ncRNA	nan	0.809	nan	0.128	0.317	0.158	0.148	0.113	0.112	0.037	0.089	0.103	0.304	0.047	0.124	0.314	0.197	0.187	0.285	0.284	0.322	0.217	0.071	0.259	0.224	6.565	7.805	0.196	0.259	0.568	0.244	0.100	0.169	0.079	0.128	0.315	0.694	0.373	0.435	0.042	0.065	0.013	0.066	0.148	0.103	0.006	0.040	0.013	0.122
398	chr1	89883180	89893211	+	0	NA	intron (NR_003133, intron 4 of 4)	intron (NR_003133, intron 4 of 4)	14957	NR_003133	400759	Hs.661968	NR_003133	ENSG00000225492	GBP1P1	-	guanylate binding protein 1 pseudogene 1	pseudo	1.020	nan	nan	2.673	1.120	0.574	0.182	0.212	0.032	0.661	0.174	1.010	5.010	0.018	0.145	1.404	1.228	0.287	0.369	0.935	0.924	9.288	3.486	2.722	2.534	0.303	0.541	8.786	6.886	0.451	0.287	0.887	2.294	3.606	3.568	0.233	0.346	4.833	2.531	1.776	1.447	1.055	0.444	0.182	1.010	0.069	0.417	2.158	0.050
7325	chr7	73645896	73651006	+	0	NA	intron (NM_181471, intron 10 of 10)	L1ME1|LINE|L1	20337	NM_001278791	5982	Hs.647062	NM_002914	ENSG00000049541	RFC2	RFC40	replication factor C subunit 2	protein-coding	nan	0.519	0.687	0.136	0.297	0.117	0.118	0.300	0.221	0.122	0.163	0.070	0.280	0.168	0.210	0.547	0.624	8.633	6.173	0.283	0.511	0.496	0.224	0.263	0.187	0.220	nan	0.292	nan	0.318	0.162	0.447	0.501	0.121	0.178	0.202	0.341	0.539	0.310	0.110	0.191	0.019	0.142	0.118	0.070		0.040	0.231	0.096
3182	chr16	76992553	77015271	+	0	NA	Intergenic	Intergenic	101079	NR_039870	100616172		NR_039870	ENSG00000266426	MIR4719	-	microRNA 4719	ncRNA	0.494	0.581	nan	0.090	0.339	0.170	0.178	0.073	0.057	0.104	0.040	0.106	0.182	0.028	0.098	0.616	0.458	0.103	0.067	0.336	0.382	3.427	0.949	0.484	0.535	0.087	0.170	0.322	0.322	0.437	0.138	0.157	0.191	0.127	0.239	0.103	0.177	0.635	0.587	0.017	0.074	0.015	0.017	0.178	0.106	0.039	0.072	0.065	0.028
3934	chr19	1847034	1865587	+	0	NA	intron (NM_031918, intron 1 of 1)	intron (NM_031918, intron 1 of 1)	7254	NM_031918	83855	Hs.136280	NM_031918	ENSG00000129911	KLF16	BTEB4|DRRF|NSLP2	Kruppel like factor 16	protein-coding	3.480	1.437	3.661	1.864	2.523	1.200	3.622	1.000	0.190	0.734	0.359	2.557	3.063	1.983	0.078	3.831	4.482	2.441	3.805	2.593	2.757	2.449	1.401	5.554	5.350	1.858	2.922	2.469	nan	7.259	8.314	1.540	2.306	3.360	3.444	3.581	4.820	1.900	1.092	1.631	2.284	1.072	0.679	3.622	2.557	1.542	1.359	0.909	2.267
955	chr1	243548202	243589177	+	0	NA	intron (NM_006642, intron 13 of 17)	intron (NM_006642, intron 13 of 17)	59211	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA	nan	1.177	nan	0.201	0.613	0.395	0.331	0.427	0.082	0.602	0.468	0.484	0.289	0.066	0.084	0.419	0.336	0.344	0.583	0.695	0.864	0.393	0.149	0.420	0.465	6.998	6.780	0.436	0.598	2.844	2.067	0.088	0.165	0.794	1.086	0.468	0.989	0.623	0.536	0.064	0.106	0.157	0.126	0.331	0.484	0.478	0.386	0.031	0.464
7358	chr7	81942265	81979550	+	0	NA	intron (NM_000722, intron 3 of 38)	intron (NM_000722, intron 3 of 38)	112215	NM_000722	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding	1.232	0.898	1.038	0.206	1.062	0.576	0.684	0.233	0.130	0.650	0.480	0.255	0.669	0.122	0.140	1.002	0.985	0.745	0.248	0.675	0.783	2.175	0.722	0.183	0.157	3.107	3.283	0.618	0.733	2.133	1.440	0.316	0.529	1.423	1.861	1.132	nan	0.735	0.573	1.067	0.252	0.486	0.294	0.684	0.255	0.169	0.060	0.103	0.507
1888	chr12	28342481	28344852	+	0	NA	intron (NM_018318, intron 1 of 12)	CpG	306	NM_001330367	55297	Hs.653125	NM_018318	ENSG00000123106	CCDC91	HSD8|p56	coiled-coil domain containing 91	protein-coding	6.779	nan	9.118	12.039	2.914	1.411	4.903	2.490	0.336	3.582	1.072	4.147	11.326	4.611	0.180	2.577	3.633	0.220	0.403	11.833	8.391	5.910	1.989	17.167	17.472	5.115	6.027	5.355	8.904	6.428	7.937	2.779	4.658	0.727	0.699	5.621	5.305	2.646	1.523	3.711	5.551	0.041	3.008	4.903	4.147	7.752	3.579	1.161	1.842
7692	chr8	60012142	60037449	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	6972	NM_014729	9760	Hs.491805	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding	2.948	2.543	2.567	3.370	5.844	2.865	2.165	0.101	0.071	1.710	0.840	3.696	7.444	0.205	0.069	1.862	2.847	0.374	0.420	9.420	7.061	1.874	0.921	0.086	0.097	3.436	nan	1.239	1.783	nan	0.474	0.085	0.141	6.176	6.052	0.132	0.221	3.707	1.871	2.257	3.041	1.780	2.693	2.165	3.696	0.061	2.981	0.035	0.102
3267	chr17	7896348	7907698	+	0	NA	Intergenic	AluJb|SINE|Alu	-3965	NM_000180	3000	Hs.592109	NM_000180	ENSG00000132518	GUCY2D	CORD5|CORD6|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC	guanylate cyclase 2D, retinal	protein-coding	1.127	0.803	1.023	0.069	0.266	0.098	0.178	0.024	0.071	0.110	0.102	0.093	0.274	0.057	0.102	0.610	0.919	0.251	0.323	0.475	0.506	0.258	0.064	0.148	0.178	0.200	0.308	0.211	0.224	0.555	0.339	0.252	0.384	0.055	0.058	3.032	7.882	0.257	0.164	0.068	0.251	0.017	0.042	0.178	0.093	0.035	0.054	0.113	2.029
4119	chr19	48342395	48372481	+	0	NA	Intergenic	MER90a|LTR|ERV1	32216	NM_003167	6822	Hs.515835	NM_003167	ENSG00000105398	SULT2A1	DHEA-ST|DHEAS|HST|ST2|ST2A1|ST2A3|STD|hSTa	sulfotransferase family 2A member 1	protein-coding	1.029	0.757	0.997	0.070	0.339	0.186	0.146	0.083	0.187	0.053	0.088	0.112	0.193	0.189	0.113	0.169	0.171	0.149	0.183	0.276	0.305	0.304	0.145	0.247	0.225	0.176	0.329	0.164	0.203	1.304	0.775	0.142	0.169	0.080	0.117	1.480	6.205	0.330	0.450	0.020	0.091	0.029	0.013	0.146	0.112	0.026	0.030	0.026	2.468
2647	chr14	64318832	64341413	+	0	NA	intron (NM_182914, intron 1 of 115)	intron (NM_182914, intron 1 of 115)	10439	NM_182914	23224	Hs.745014	NM_015180	ENSG00000054654	SYNE2	EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH	spectrin repeat containing nuclear envelope protein 2	protein-coding	nan	nan	1.860	1.888	1.992	0.991	1.050	1.234	0.258	0.539	0.317	1.469	3.379	0.782	0.147	0.781	0.861	1.860	3.623	2.643	2.442	1.433	0.463	nan	2.096	0.980	1.601	3.223	nan	1.508	1.347	0.609	0.976	1.447	2.139	1.217	1.388	1.223	0.833	2.489	3.742	0.395	0.682	1.050	1.469	0.270	0.472	0.311	0.461
190	chr1	32960647	32968035	+	0	NA	Intergenic	AluSz6|SINE|Alu	33683	NM_001145720	728116	Hs.647658	NM_001145720	ENSG00000273274	ZBTB8B	ZNF916B	zinc finger and BTB domain containing 8B	protein-coding	3.399	nan	2.533	3.945	1.896	1.042	2.448	1.127	0.371	1.357	0.683	7.773	3.162	2.308	0.170	2.268	2.281	2.603	2.887	4.184	3.997	nan	1.043	2.351	2.156	2.276	3.125	2.611	4.491	nan	1.606	1.840	2.713	0.928	0.890	1.101	1.783	2.772	nan	1.947	2.221	0.117	0.717	2.448	7.773	0.604	0.936	0.672	0.386
1808	chr12	7340859	7343725	+	0	NA	promoter-TSS (NM_001131023)	promoter-TSS (NM_001131023)	10	NM_001131025	5830	Hs.567327	NM_000319	ENSG00000139197	PEX5	PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5	peroxisomal biogenesis factor 5	protein-coding	3.085	nan	2.892	4.890	2.557	1.480	1.379	0.737	0.058	2.325	1.212	3.919	8.225	2.524	0.130	2.048	2.846	2.986	4.030	7.825	6.748	13.363	4.566	9.183	9.735	3.012	3.812	4.886	7.165	3.353	4.269	1.660	3.271	3.922	2.237	5.444	nan	2.506	1.226	2.520	4.140	0.360	1.081	1.379	3.919	6.319	2.087	0.948	2.438
1739	chr11	130899347	130913894	+	0	NA	Intergenic	Intergenic	-120238	NM_001347925	399979	Hs.444024	NM_014758	ENSG00000120451	SNX19	CHET8	sorting nexin 19	protein-coding	0.463	nan	0.431	0.060	0.965	0.550	0.326	0.051	0.033	0.042	0.107	0.058	nan	0.060	0.105	0.460	0.306	0.168	0.211	0.147	0.223	0.136	0.054	0.098	0.155	0.172	0.286	0.157	0.146	0.514	0.404	0.634	0.704	0.068	0.115	0.132	0.289	0.263	0.433	4.141	0.068	0.033	0.028	0.326	0.058	0.013	0.055	0.269	0.061
601	chr1	158968100	158983154	+	0	NA	Intergenic	Intergenic	-4055	NM_005531	3428	Hs.380250	NM_005531	ENSG00000163565	IFI16	IFNGIP1|PYHIN2	interferon gamma inducible protein 16	protein-coding	nan	nan	0.837	0.047	0.559	0.319	0.077	3.458	0.267	0.322	0.256	0.032	0.326	0.029	0.115	0.347	0.157	2.256	5.805	0.281	nan	0.105	0.064	0.086	0.077	0.374	0.494	0.503	0.948	0.229	0.124	0.237	0.318	0.061	0.078	0.232	0.499	1.711	1.038	0.038	0.107	0.006	0.021	0.077	0.032	0.013	0.460	0.072	0.091
822	chr1	205885826	205922780	+	0	NA	intron (NM_134325, intron 2 of 21)	intron (NM_134325, intron 2 of 21)	8285	NM_134325	115019	Hs.164073	NM_052934	ENSG00000174502	SLC26A9	-	solute carrier family 26 member 9	protein-coding	0.894	1.892	0.950	0.318	0.706	0.369	0.509	0.210	0.113	0.551	0.400	2.252	1.493	0.056	0.106	0.729	0.880	0.602	0.947	2.370	3.102	0.819	0.326	nan	nan	0.203	0.391	1.603	2.083	0.376	0.266	0.658	1.041	0.417	0.437	0.261	0.368	1.608	0.894	2.920	3.639	0.131	0.082	0.509	2.252	0.272	0.066	1.271	0.054
504	chr1	146707473	146715882	+	0	NA	Intergenic	Intergenic	-2614	NM_001256338	9557	Hs.191164	NM_004284	ENSG00000131778	CHD1L	ALC1|CHDL	chromodomain helicase DNA binding protein 1 like	protein-coding	2.035	5.618	2.565	2.832	1.265	0.821	0.882	0.633	0.174	1.085	0.615	0.875	5.551	1.121	0.126	2.215	2.345	1.863	2.943	2.968	2.403	2.196	0.993	2.461	2.436	1.619	2.012	2.401	3.029	1.724	2.158	3.202	5.908	1.663	1.192	2.525	3.750	1.469	1.086	0.690	2.562	0.297	0.576	0.882	0.875	0.263	2.581	1.599	0.748
8249	chr9	116394571	116423580	+	0	NA	Intergenic	L2|LINE|L2	52641	NM_001276262	5998	Hs.494875	NM_017790	ENSG00000138835	RGS3	C2PA|RGP3	regulator of G-protein signaling 3	protein-coding	1.077	1.034	nan	0.733	0.384	0.198	0.210	2.221	0.188	0.130	0.128	0.240	0.737	0.060	0.088	0.293	0.353	0.207	0.477	0.833	0.892	0.867	0.291	0.399	0.401	0.227	0.406	0.757	nan	1.370	1.244	0.208	0.264	0.400	0.454	1.113	3.666	nan	0.844	0.538	0.110	0.095	0.148	0.210	0.240	0.288	1.454	0.062	1.132
7190	chr7	20253670	20267764	+	0	NA	intron (NR_134569, intron 3 of 3)	intron (NR_134569, intron 3 of 3)	3517	NR_134569	100506098	Hs.59203	NR_134567	ENSG00000233834	LOC100506098	-	uncharacterized LOC100506098	ncRNA	0.977	1.654	1.201	1.930	0.795	0.497	0.227	0.122	0.126	0.722	0.361	0.970	1.713	0.032	0.176	2.896	2.632	5.699	nan	0.635	0.642	6.873	4.057	1.381	1.372	0.458	0.679	8.119	9.881	0.370	0.157	1.950	2.241	2.889	3.055	0.286	nan	1.284	0.908	2.002	0.152	0.521	0.056	0.227	0.970	0.034	0.891	0.828	0.036
3177	chr16	74450643	74460290	+	0	NA	promoter-TSS (NM_001011880)	promoter-TSS (NM_001011880)	-98	NM_001011880	497190	Hs.454670	NM_001011880	ENSG00000140839	CLEC18B	MRCL2	C-type lectin domain family 18 member B	protein-coding	1.856	0.885	nan	0.228	0.265	0.099	0.452	0.071	0.200	0.082	0.068	0.062	0.319	0.079	0.083	0.693	0.463	0.243	0.327	0.335	0.351	0.530	0.270	0.737	0.788	0.169	0.399	0.496	0.782	0.660	0.489	0.288	0.260	0.069	0.058	0.365	0.402	0.605	0.681	0.104	0.083	0.059	8.041	0.452	0.062	0.203	0.084	0.020	0.051
3387	chr17	37350722	37366819	+	0	NA	intron (NM_001330200, intron 3 of 5)	intron (NM_001330200, intron 3 of 5)	2194	NM_001330200	6143	Hs.381061	NM_000981	ENSG00000108298	RPL19	L19	ribosomal protein L19	protein-coding	nan	2.431	1.422	1.275	2.925	1.450	2.815	1.344	0.219	1.285	0.696	2.000	5.012	1.712	0.081	3.225	3.394	2.540	3.377	nan	4.405	3.887	2.443	6.756	7.434	1.989	2.722	4.149	5.271	nan	4.389	2.560	3.151	2.708	3.540	3.058	3.534	2.120	1.136	3.821	1.488	0.528	0.832	2.815	2.000	1.324	1.644	0.859	1.076
7617	chr8	22481881	22496700	+	0	NA	intron (NM_018688, intron 4 of 8)	intron (NM_018688, intron 4 of 8)	10432	NR_027715	80094	Hs.675917	NM_025026		BIN3-IT1	-	BIN3 intronic transcript 1	ncRNA	nan	0.526	nan	0.442	0.534	0.323	0.320	0.110	0.056	0.698	0.351	0.678	0.279	0.095	0.112	0.563	0.980	0.220	0.449	nan	3.248	nan	0.838	0.210	0.316	0.192	0.294	1.558	1.441	0.251	0.205	0.268	0.273	0.596	0.566	0.225	0.480	nan	nan	5.441	0.583	0.070	0.037	0.320	0.678	0.078	0.681	0.033	0.157
1966	chr12	56120965	56138401	+	0	NA	Intergenic	AluSx|SINE|Alu	-6226	NM_001257389	967	Hs.445570	NM_001780	ENSG00000135404	CD63	LAMP-3|ME491|MLA1|OMA81H|TSPAN30	CD63 molecule	protein-coding	nan	2.051	1.620	1.238	2.198	0.966	2.284	1.526	0.233	0.931	0.577	1.872	4.547	1.441	0.090	nan	3.707	2.002	2.549	2.866	nan	4.507	1.629	2.538	2.488	2.028	nan	3.153	nan	3.215	3.539	1.051	2.077	2.401	2.104	1.587	2.978	2.603	1.372	1.059	3.303	0.541	0.938	2.284	1.872	0.730	1.628	0.938	0.598
1665	chr11	115780603	115812921	+	0	NA	Intergenic	Intergenic	-165844	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA	0.682	0.811	0.734	0.337	0.882	0.516	0.391	0.028	0.055	0.496	0.319	2.013	0.927	0.047	0.107	0.744	nan	0.220	0.503	2.195	2.309	1.986	0.449	0.117	0.120	0.683	nan	3.570	2.366	0.693	0.483	0.520	0.616	0.583	0.576	0.327	0.763	1.714	1.005	1.088	0.228	0.146	0.430	0.391	2.013	0.410	0.148	0.107	0.373
8212	chr9	97542598	97589110	+	0	NA	intron (NM_032823, intron 5 of 14)	intron (NM_032823, intron 5 of 14)	-6390	NR_031755	100313780		NR_031755	ENSG00000252153	MIR2278	mir-2278	microRNA 2278	ncRNA	0.833	nan	0.859	0.288	1.255	0.617	0.342	0.652	0.153	0.298	0.182	0.763	0.612	0.081	0.090	0.351	0.598	2.147	nan	0.494	0.685	0.395	0.179	0.231	0.271	0.448	0.640	1.055	0.999	0.869	0.631	0.913	1.087	0.505	0.741	0.414	0.893	1.363	0.852	0.499	0.159	0.104	0.110	0.342	0.763	0.104	0.368	0.923	0.130
5446	chr3	106406319	106421068	+	0	NA	Intergenic	Intergenic	545792	NR_028303	100302640	Hs.648607	NR_028303	ENSG00000242759	LINC00882	-	long intergenic non-protein coding RNA 882	ncRNA	nan	nan	1.040	0.179	2.735	1.401	0.096	0.209	0.132	0.626	0.516	3.855	0.395	0.022	0.099	0.313	0.174	0.213	0.353	0.521	0.675	2.681	1.301	0.194	0.205	0.502	0.708	0.578	0.643	0.770	0.354	0.121	0.148	0.486	0.312	0.522	1.015	1.227	0.785	0.007	0.187	0.104	0.060	0.096	3.855	0.066	0.164	0.020	0.175
3873	chr18	64189279	64202987	+	0	NA	intron (NR_073130, intron 9 of 11)	intron (NR_073130, intron 9 of 11)	75242	NR_073130	28513	Hs.42771	NM_021153	ENSG00000071991	CDH19	CDH7|CDH7L2	cadherin 19	protein-coding	0.798	0.762	0.624	0.070	0.191	0.124	0.264	0.073	0.046	0.413	0.403	0.035	0.320	0.063	0.080	0.395	0.290	0.215	0.250	0.360	0.377	8.330	4.876	0.402	nan	0.282	nan	0.550	0.534	0.337	0.155	0.128	0.170	1.327	0.905	0.221	0.356	0.832	0.528	0.020	0.039	0.188	0.070	0.264	0.035	0.015	0.141	0.048	0.009
8005	chr8	145732236	145736158	+	0	NA	promoter-TSS (NM_138431)	promoter-TSS (NM_138431)	-222	NR_130120	113655	Hs.7678	NM_138431	ENSG00000167700	MFSD3	-	major facilitator superfamily domain containing 3	protein-coding	6.873	3.262	nan	9.012	7.815	4.190	3.479	1.356	0.168	1.555	0.906	9.328	8.661	1.998	0.053	6.717	7.548	4.326	6.719	nan	10.634	nan	2.651	11.903	12.900	2.466	3.212	6.508	8.576	5.523	7.238	9.987	12.589	6.739	5.448	6.089	6.518	4.441	2.046	6.528	7.553	1.445	3.330	3.479	9.328	1.665	4.850	3.948	2.200
2252	chr13	27578404	27592224	+	0	NA	Intergenic	Intergenic	-114356	NR_046547	100874070	Hs.524923	NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA	1.017	0.886	1.401	0.814	0.205	0.147	0.381	0.109	0.128	0.149	0.209	1.387	1.061	0.039	0.062	1.540	2.910	0.235	nan	3.322	2.653	2.767	0.731	0.191	0.187	0.970	1.331	2.599	3.061	5.211	6.069	0.627	1.105	0.194	0.099	0.401	0.663	1.050	0.653	0.486	0.845	0.034	0.249	0.381	1.387	0.302	0.919	0.523	0.204
5751	chr3	185079618	185129332	+	0	NA	intron (NM_004721, intron 1 of 13)	L1PA11|LINE|L1	23639	NM_004721	9175	Hs.591306	NM_004721	ENSG00000073803	MAP3K13	LZK|MEKK13|MLK	mitogen-activated protein kinase kinase kinase 13	protein-coding	1.981	1.617	1.391	0.289	1.150	0.570	0.397	0.200	0.142	0.844	0.567	0.227	0.450	0.044	0.086	0.456	0.497	1.418	1.020	0.641	0.658	0.772	0.200	0.333	0.365	2.331	2.829	0.621	0.699	4.884	4.255	0.514	0.658	2.510	2.759	2.815	7.181	1.561	0.877	0.045	0.353	0.805	0.386	0.397	0.227	0.518	0.088	0.402	2.227
2506	chr14	29119878	29132902	+	0	NA	Intergenic	Intergenic	108135	NR_125758	103695363	Hs.569360	NR_125758		FOXG1-AS1	FOXG1-AS	FOXG1 antisense RNA 1 (head to head)	ncRNA	0.943	0.919	0.932	0.960	0.270	0.228	0.609	0.120	0.099	0.168	0.109	0.377	0.758	0.041	0.141	0.192	0.141	0.258	0.353	0.441	0.590	11.309	5.295	0.243	0.226	0.445	0.522	0.691	0.795	0.702	0.317	0.115	0.117	2.292	2.701	0.195	0.222	0.437	0.506	0.074	0.403	0.411	0.091	0.609	0.377	0.022	0.078	0.015	0.029
6461	chr5	137908773	137912890	+	0	NA	intron (NM_004134, intron 1 of 16)	intron (NM_004134, intron 1 of 16)	487	NM_004134	3313	Hs.184233	NM_004134	ENSG00000113013	HSPA9	CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4	heat shock protein family A (Hsp70) member 9	protein-coding	5.795	5.182	nan	6.390	10.583	5.732	3.906	4.663	0.356	2.306	1.116	8.985	15.164	8.492	0.325	7.091	6.543	11.033	15.376	8.682	9.743	10.568	8.783	23.904	25.907	6.193	7.128	12.334	15.164	11.858	11.768	14.957	18.102	9.713	13.544	9.228	9.211	4.420	2.094	4.063	8.386	2.295	6.006	3.906	8.985	1.265	5.516	4.842	3.164
3122	chr16	33191857	33207406	+	0	NA	Intergenic	Intergenic	-5952	NM_001099687	729355	Hs.592038	NM_001099687	ENSG00000261509	TP53TG3B	TP53TG3E|TP53TG3F	TP53 target 3B	protein-coding	0.369	0.425	0.334	0.123	2.891	1.433	0.156	0.116	0.052	0.195	0.124	0.701	2.597	0.639	0.095	0.239	0.142	0.127	0.199	0.829	0.726	1.001	0.246	0.265	0.219	0.415	0.527	4.407	4.861	0.359	0.152	0.123	0.179	0.043	0.081	0.076	0.118	0.210	0.249	4.359	0.052	0.043	0.046	0.156	0.701	0.100	1.538	0.038	0.064
3368	chr17	33401554	33428302	+	0	NA	intron (NR_037713, intron 1 of 6)	intron (NR_037713, intron 1 of 6)	1420	NR_037713	117584	Hs.13680	NM_057178	ENSG00000092871	RFFL	CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein-coding	nan	1.302	0.886	0.192	0.847	0.406	0.623	0.412	0.163	0.639	0.325	0.756	1.509	0.408	0.112	1.780	1.423	1.369	1.437	nan	1.027	2.117	0.620	1.400	1.370	0.717	1.070	0.940	1.280	nan	0.366	0.393	0.633	1.562	3.147	0.246	0.534	1.557	0.893	0.419	0.420	0.297	0.176	0.623	0.756	0.211	0.685	0.189	0.073
2401	chr13	100601675	100655001	+	0	NA	Intergenic	Intergenic	-4160	NM_033132	85416	Hs.508570	NM_033132	ENSG00000139800	ZIC5	-	Zic family member 5	protein-coding	2.926	6.213	2.609	5.139	0.466	0.205	7.791	0.225	0.084	3.139	1.561	0.267	11.310	0.783	0.086	0.513	0.258	0.710	1.154	5.149	4.491	6.712	2.643	1.372	1.321	1.233	nan	1.666	2.842	1.283	1.893	0.155	0.192	10.758	9.165	0.156	nan	1.252	0.761	3.797	2.639	3.199	3.168	7.791	0.267	0.836	0.450	0.032	0.046
3994	chr19	18260382	18272849	+	0	NA	non-coding (NR_073517, exon 2 of 16)	non-coding (NR_073517, exon 2 of 16)	2627	NM_005027	5296	Hs.371344	NM_005027	ENSG00000105647	PIK3R2	MPPH|MPPH1|P85B|p85|p85-BETA	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	4.800	2.322	4.814	3.067	2.813	1.570	2.217	0.810	0.219	2.253	0.986	2.041	4.735	1.967	0.111	1.411	1.884	2.127	2.999	4.527	3.855	5.962	2.625	3.270	3.586	4.770	5.927	4.295	7.847	5.319	5.796	0.840	1.174	4.369	3.733	4.780	4.400	4.608	1.878	3.255	1.415	1.427	0.431	2.217	2.041	1.540	2.626	0.398	1.455
1516	chr11	72744242	72762368	+	0	NA	intron (NM_014824, intron 3 of 19)	L1MA4A|LINE|L1	99838	NM_014824	9873	Hs.744959	NM_014824	ENSG00000137478	FCHSD2	NWK|SH3MD3	FCH and double SH3 domains 2	protein-coding	nan	0.810	0.669	0.160	0.248	0.124	0.137	0.121	0.088	0.204	0.189	0.106	0.319	0.067	0.166	2.556	1.971	3.078	1.247	0.336	0.519	0.277	0.168	10.416	11.014	0.450	0.688	0.383	0.402	0.492	0.241	0.297	0.583	0.350	0.525	0.380	0.932	0.479	0.487	0.044	0.064	0.125	0.126	0.137	0.106	0.016	0.051	0.098	0.150
3733	chr18	33187588	33197781	+	0	NA	Intergenic	AluSq2|SINE|Alu	20983	NR_039771	100616257		NR_039771	ENSG00000283514	MIR3975	-	microRNA 3975	ncRNA	nan	0.989	1.804	0.398	0.331	0.142	0.252	0.237	0.045	0.182	0.204	0.693	0.571	0.071	0.112	1.768	2.353	0.241	0.440	0.555	0.735	0.335	0.176	0.153	0.212	0.460	0.659	nan	2.413	0.421	0.236	0.190	0.264	4.452	6.254	0.181	0.367	1.322	1.088	0.092	0.070	0.811	0.063	0.252	0.693	0.091	0.066	0.029	0.206
6779	chr6	44140555	44161147	+	0	NA	intron (NM_007058, intron 20 of 22)	intron (NM_007058, intron 20 of 22)	24303	NM_007058	11131	Hs.225953	NM_007058	ENSG00000137225	CAPN11	calpain11	calpain 11	protein-coding	1.019	0.687	0.890	0.259	0.737	0.494	0.199	0.102	0.071	0.207	0.157	0.516	0.424	0.142	0.120	1.068	0.908	0.393	0.440	0.462	0.602	5.019	1.566	0.615	0.695	0.184	0.388	0.827	nan	0.550	0.282	0.586	0.584	0.201	0.251	0.969	1.265	0.791	0.623	0.060	0.194	0.050	0.104	0.199	0.516	0.038	0.168	0.214	0.181
2053	chr12	82742230	82760695	+	0	NA	promoter-TSS (NM_001319675)	promoter-TSS (NM_001319675)	737	NM_014167	29080	Hs.582627	NM_014167	ENSG00000133773	CCDC59	BR22|HSPC128|TAP26	coiled-coil domain containing 59	protein-coding	1.455	1.265	1.165	0.882	1.094	0.617	0.651	0.656	0.157	0.588	0.432	0.829	1.942	0.600	0.087	1.302	1.538	1.481	1.922	3.081	3.243	2.402	1.180	3.107	3.276	1.611	2.153	2.192	2.783	2.145	2.141	0.923	1.586	2.689	2.747	1.650	1.257	1.565	1.067	0.494	0.698	0.848	0.506	0.651	0.829	0.348	0.395	0.321	0.248
4775	chr2	237751033	237787398	+	0	NA	Intergenic	MER30|DNA|hAT-Charlie	195595	NR_135202	93463	Hs.652810	NR_135202	ENSG00000124835	LOC93463	-	uncharacterized LOC93463	ncRNA	1.130	nan	0.962	0.408	0.284	0.149	0.961	0.077	0.027	0.052	0.066	0.271	0.749	0.066	0.091	1.969	2.996	0.265	0.653	0.686	0.786	0.128	0.083	0.320	0.373	0.545	0.773	0.484	nan	0.545	0.310	0.889	1.206	0.106	0.107	0.346	0.868	0.172	0.168	3.373	0.174	0.045	0.069	0.961	0.271	0.095	0.457	1.055	0.064
7043	chr6	150766777	150779103	+	0	NA	Intergenic	Intergenic	82912	NM_001318495	389434	Hs.310225	NM_203395	ENSG00000009765	IYD	C6orf71|DEHAL1|IYD-1|TDH4	iodotyrosine deiodinase	protein-coding	nan	0.851	0.584	1.005	0.211	0.153	0.311	0.066	0.117	0.078	0.075	0.872	0.523	0.200	0.092	0.328	0.287	0.212	0.442	0.492	nan	5.737	2.307	0.228	0.283	0.062	0.122	1.332	0.975	0.598	0.313	0.181	0.266	0.065	0.102	0.146	nan	0.117	0.194	0.134	0.236	0.008	0.046	0.311	0.872	0.016	0.024	0.048	0.060
4904	chr20	25840298	25849021	+	0	NA	Intergenic	SST1|Satellite|centr	-10002	NR_110001	101926935	Hs.737440	NR_110001		LOC101926935	-	uncharacterized LOC101926935	ncRNA	0.770	1.605	nan	0.256	0.753	0.276	0.734	0.210	0.111	0.252	0.139	0.396	2.700	0.634	0.080	4.576	7.911	1.029	1.502	1.406	1.617	0.472	0.166	1.240	1.200	1.225	1.594	0.765	0.639	1.754	0.907	0.879	1.440	0.135	0.226	0.305	0.722	0.397	0.399	0.373	0.353	0.088	0.036	0.734	0.396	0.753	1.083	0.443	0.185
172	chr1	29506119	29509294	+	0	NA	intron (NM_005626, intron 1 of 5)	intron (NM_005626, intron 1 of 5)	931	NM_005626	6429	Hs.469970	NM_005626	ENSG00000116350	SRSF4	SFRS4|SRP75	serine and arginine rich splicing factor 4	protein-coding	8.520	6.383	nan	12.181	8.110	4.426	6.539	4.450	0.587	4.231	2.307	7.926	13.800	6.960	0.252	9.618	8.150	11.617	16.716	14.757	15.444	7.595	5.169	19.958	21.073	8.739	10.025	7.562	12.872	11.087	10.613	6.404	11.146	5.873	8.005	11.295	9.284	4.224	2.513	9.416	6.444	1.382	3.228	6.539	7.926	1.807	5.201	2.942	4.234
7648	chr8	37739913	37763940	+	0	NA	intron (NM_001002814, intron 1 of 5)	intron (NM_001002814, intron 1 of 5)	5089	NM_025151	80223	Hs.191179	NM_025151	ENSG00000156675	RAB11FIP1	NOEL1A|RCP|rab11-FIP1	RAB11 family interacting protein 1	protein-coding	1.338	2.780	nan	3.954	0.834	0.446	1.564	0.228	0.116	0.679	0.304	1.324	1.386	0.727	0.118	0.930	1.206	1.437	3.990	1.177	1.160	2.730	1.472	0.772	0.807	0.412	0.704	2.528	3.594	0.615	0.476	0.419	0.660	1.083	1.626	0.633	1.074	1.843	1.287	0.221	1.245	0.211	0.118	1.564	1.324	0.089	0.300	0.178	0.173
5993	chr4	113801817	113831771	+	0	NA	intron (NM_001127493, intron 1 of 46)	intron (NM_001127493, intron 1 of 46)	77555	NM_001127493	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding	1.325	0.905	0.730	0.120	0.257	0.123	0.290	0.095	0.069	0.139	0.099	0.289	0.239	0.072	0.089	0.217	0.183	0.220	0.255	0.151	0.182	0.111	0.069	0.103	0.137	1.361	1.491	0.355	0.328	4.684	4.163	0.166	0.272	0.383	0.401	0.772	2.382	0.445	0.368	0.033	0.112	0.054	0.084	0.290	0.289	0.153	0.030	0.056	1.339
6332	chr5	73606264	73639517	+	0	NA	intron (NR_105010, intron 2 of 2)	intron (NR_105010, intron 2 of 2)	4579	NR_105010	101929082	Hs.434316	NR_105010	ENSG00000249343	LINC01333	-	long intergenic non-protein coding RNA 1333	ncRNA	1.009	nan	1.116	0.108	0.378	0.223	0.606	0.316	0.095	0.117	0.105	0.216	0.493	3.214	0.198	0.246	0.271	0.591	1.554	0.496	0.513	nan	0.358	0.148	0.126	1.373	nan	0.508	0.393	0.638	0.495	0.120	0.348	0.978	1.191	0.528	1.847	0.547	0.427	0.405	0.504	0.231	0.127	0.606	0.216	0.163	0.333	0.185	0.453
5431	chr3	89803952	89809697	+	0	NA	Intergenic	L1PA15-16|LINE|L1	650150	NM_182644	2042	Hs.123642	NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding	nan	0.659	0.528	0.027	0.139	0.083	0.090	0.026	0.028	0.163	0.070	0.166	0.146	0.037	0.157	0.464	0.451	10.719	3.601	0.133	0.173	0.709	0.260	0.145	0.115	0.210	0.246	0.141	0.108	0.365	0.126	0.041	0.081	0.052	0.070	0.270	0.281	0.257	0.549	0.010				0.090	0.166	0.017	0.018	0.034	0.043
4252	chr2	23745634	23790390	+	0	NA	intron (NM_052920, intron 2 of 13)	intron (NM_052920, intron 2 of 13)	159714	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding	2.256	1.590	1.194	1.298	0.804	0.387	0.754	0.205	0.104	1.957	1.024	1.316	14.067	0.076	0.099	0.480	1.069	0.661	1.230	0.860	1.034	2.181	0.727	0.817	0.945	1.768	2.639	1.616	nan	1.737	1.498	0.556	0.663	1.182	0.971	0.926	2.187	3.142	1.628	0.474	0.283	0.318	0.460	0.754	1.316	1.595	1.163	0.239	0.671
223	chr1	38153082	38164151	+	0	NA	exon (NM_001256875, exon 2 of 10)	exon (NM_001256875, exon 2 of 10)	543	NM_001256875	55143	Hs.524571	NM_018101	ENSG00000134690	CDCA8	BOR|BOREALIN|DasraB|MESRGP	cell division cycle associated 8	protein-coding	2.483	nan	2.456	4.647	1.642	0.803	1.386	1.051	0.231	1.121	0.767	3.084	4.094	2.351	0.196	1.348	1.363	2.026	2.895	4.303	3.911	nan	0.432	2.170	2.105	2.057	3.180	11.066	11.255	nan	2.186	1.815	3.287	1.250	1.663	1.571	3.183	1.715	nan	1.179	1.090	0.181	0.563	1.386	3.084	0.580	0.640	0.680	0.967
1043	chr10	14878027	14882089	+	0	NA	promoter-TSS (NM_001029954)	promoter-TSS (NM_001029954)	-75	NM_001029954	441549	Hs.559067	NM_001029954	ENSG00000185267	CDNF	ARMETL1	cerebral dopamine neurotrophic factor	protein-coding	nan	3.617	6.207	4.329	3.235	1.815	2.237	4.019	0.514	1.963	0.480	4.770	5.296	2.113	0.196	5.535	6.175	6.732	10.165	6.840	5.799	15.400	7.302	5.892	6.714	4.786	6.118	5.370	9.243	4.803	5.731	2.128	4.194	4.564	5.154	6.648	5.740	3.159	1.770	0.819	1.745	0.699	2.255	2.237	4.770	0.667	2.272	1.164	1.644
7370	chr7	91259998	91273374	+	0	NA	Intergenic	Intergenic	243348	NM_001301135	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF1	MTERF	mitochondrial transcription termination factor 1	protein-coding	nan	0.964	nan	1.267	1.116	0.736	0.468	0.157	0.048	0.385	0.307	2.876	1.582	0.071	0.112	0.375	0.278	0.262	0.292	1.095	1.004	6.867	3.438	0.242	0.297	0.772	1.044	3.185	2.509	0.418	0.183	0.202	0.494	0.465	0.518	0.249	nan	1.190	1.067	1.366	0.212	0.071	0.077	0.468	2.876	0.051	1.787	0.111	0.249
4999	chr20	50469312	50538010	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-24209	NR_110016	101927678	Hs.683840	NR_110016	ENSG00000227964	LINC01429	-	long intergenic non-protein coding RNA 1429	ncRNA	0.761	0.941	0.562	0.095	0.259	0.147	0.132	0.171	0.205	0.096	0.101	0.153	0.378	4.761	0.307	0.622	nan	0.251	0.442	0.243	0.284	0.748	0.220	0.316	0.338	0.281	0.484	0.248	0.348	0.442	0.228	0.253	0.314	0.140	0.182	0.235	0.575	0.314	0.434	0.035	0.078	0.028	0.097	0.132	0.153	0.043	0.067	0.050	0.070
6014	chr4	124568932	124574109	+	0	NA	Intergenic	Intergenic	-2420	NR_027105	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA	1.312	2.436	nan	0.363	4.855	2.385	0.620	1.642	0.224	1.105	0.633	2.044	2.535	0.041	0.104	0.216	0.250	5.834	9.357	3.428	3.024	5.488	4.405	11.391	11.735	0.075	0.203	1.565	2.554	0.266	0.208	10.622	12.425	3.775	1.729	0.298	0.452	2.040	1.528	0.138	0.845	0.467	0.092	0.620	2.044	0.113	0.956	12.963	
4571	chr2	164177486	164207527	+	0	NA	Intergenic	L3|LINE|CR1	400011	NM_018086	55137	Hs.593650	NM_018086	ENSG00000182263	FIGN	-	fidgetin, microtubule severing factor	protein-coding	1.103	0.974	nan	0.106	0.791	0.470	0.081	0.142	0.102	0.785	0.441	0.052	0.324	1.034	0.074	0.356	0.287	0.360	0.383	0.257	0.336	0.224	0.082	0.283	0.245	0.472	0.598	0.339	0.398	0.509	0.237	0.160	0.237	6.185	7.207	0.479	1.233	1.319	0.592	0.130	0.068	1.876	0.045	0.081	0.052	0.007	0.182	0.049	0.230
1852	chr12	16063290	16071205	+	0	NA	intron (NM_015954, intron 1 of 8)	AluSz6|SINE|Alu	3141	NM_015954	51071	Hs.39429	NM_015954	ENSG00000023697	DERA	CGI-26|DEOC	deoxyribose-phosphate aldolase	protein-coding	2.848	1.545	2.569	4.084	1.337	0.791	1.185	0.502	0.021	1.226	0.637	1.424	3.499	0.932	0.100	1.279	1.264	2.204	3.379	nan	2.874	4.911	1.847	1.916	1.914	2.020	2.479	4.281	5.963	2.130	2.236	0.834	1.335	1.505	1.661	6.079	7.877	1.693	0.845	1.766	2.082	0.155	1.027	1.185	1.424	0.371	0.704	0.579	2.877
7737	chr8	70548834	70570923	+	0	NA	intron (NR_132437, intron 16 of 16)	AluSp|SINE|Alu	54743	NR_132437	23213	Hs.409602	NM_015170	ENSG00000137573	SULF1	SULF-1	sulfatase 1	protein-coding	1.016	0.745	0.724	0.148	0.225	0.160	0.348	0.264	0.117	0.149	0.110	0.104	0.533	0.049	0.083	0.240	0.126	0.292	0.425	0.487	0.539	0.647	0.212	0.254	0.279	4.158	4.800	0.136	0.147	0.395	0.156	0.133	0.176	1.573	2.876	0.292	0.510	2.054	1.104	0.008	0.104	0.348	0.096	0.348	0.104	0.026	0.157	0.023	0.154
5470	chr3	112972018	112996573	+	0	NA	intron (NM_001301861, intron 4 of 19)	intron (NM_001301861, intron 4 of 19)	52951	NM_001301861	91653	Hs.591318	NM_033254	ENSG00000144857	BOC	CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding	2.203	nan	1.927	1.276	1.147	0.555	0.945	1.230	0.177	0.231	0.151	2.534	0.467	0.030	0.055	1.348	1.717	2.023	1.942	1.115	nan	3.998	1.059	0.627	0.644	nan	3.681	1.373	1.284	2.697	2.951	0.493	0.849	0.402	0.357	0.743	1.995	0.740	0.663	0.623	0.215	0.051	1.239	0.945	2.534	0.836	0.224	0.206	0.652
7956	chr8	139840775	139863693	+	0	NA	intron (NM_152888, intron 4 of 64)	MIR3|SINE|MIR	74015	NM_152888	169044	Hs.117169	NM_152888	ENSG00000169436	COL22A1	-	collagen type XXII alpha 1 chain	protein-coding	nan	0.684	0.824	1.370	0.777	0.409	0.492	0.065	0.063	0.474	0.099	2.583	3.874	0.033	0.073	0.270	0.178	0.108	0.142	2.088	1.993	4.295	1.458	nan	0.159	0.147	0.231	1.845	1.606	0.502	0.417	0.183	0.201	0.434	0.766	0.183	0.248	1.479	0.885	0.026	0.136	0.104	0.811	0.492	2.583	0.262	4.480	0.017	0.038
2248	chr13	27085403	27119927	+	0	NA	Intergenic	Intergenic	-29175	NM_006646	10810	Hs.618732	NM_006646	ENSG00000132970	WASF3	Brush-1|SCAR3|WAVE3	WAS protein family member 3	protein-coding	1.128	0.874	1.611	0.201	0.180	0.099	0.122	0.114	0.125	0.182	0.125	0.322	0.257	0.047	0.072	1.677	1.607	0.273	nan	0.420	0.469	1.356	0.278	0.074	0.077	0.898	1.327	0.220	0.269	3.291	3.342	0.773	0.996	0.123	0.238	2.445	7.150	1.026	0.814	0.018	0.067	0.022	0.154	0.122	0.322	0.104	0.059	0.441	1.744
6130	chr5	1311038	1359945	+	0	NA	intron (NM_030782, intron 5 of 16)	intron (NM_030782, intron 5 of 16)	9694	NM_030782	81037	Hs.444673	NM_030782	ENSG00000049656	CLPTM1L	CRR9	CLPTM1 like	protein-coding	0.846	1.913	6.084	1.849	1.353	0.652	0.476	0.332	0.125	0.618	0.493	2.330	1.672	3.278	0.196	1.338	1.520	0.615	nan	3.264	2.943	2.129	0.842	0.322	0.317	1.207	1.813	nan	2.381	nan	1.241	0.592	0.833	0.612	0.635	0.285	0.396	1.722	nan	1.369	1.514	0.134	0.395	0.476	2.330	0.368	0.944	0.461	0.195
4957	chr20	43319872	43332425	+	0	NA	Intergenic	Intergenic	-17337	NM_001323370	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding	nan	nan	0.896	0.580	0.387	0.205	0.303	0.895	0.155	0.100	0.097	0.228	0.541	0.096	0.087	0.696	0.726	0.218	0.350	0.356	0.363	nan	0.230	0.344	0.373	0.664	1.114	0.436	0.598	nan	4.616	0.378	0.548	0.166	0.171	1.853	4.719	0.448	0.404	0.114	0.106		0.102	0.303	0.228	0.140	0.121	0.229	1.633
5306	chr22	49038151	49050782	+	0	NA	intron (NM_015381, intron 2 of 3)	AluSg7|SINE|Alu	72348	NM_015381	25817	Hs.436854	NM_015381	ENSG00000219438	FAM19A5	QLLK5208|TAFA-5|TAFA5|UNQ5208	family with sequence similarity 19 member A5, C-C motif chemokine like	protein-coding	0.647	0.243	nan	0.035	0.437	0.127	0.181	0.012	0.051	0.125	0.111	0.365	0.413	0.061	0.069	0.389	0.515	0.075	0.171	0.580	0.586	0.484	0.282	0.063	0.117	0.243	0.488	2.004	1.978	0.772	0.848	0.246	0.283	0.216	0.280	0.064	0.065	1.004	0.608	0.269	0.077	0.030	0.122	0.181	0.365	0.224	2.282	0.023	0.020
1417	chr11	47999518	48059413	+	0	NA	intron (NM_002843, intron 1 of 24)	MIR3|SINE|MIR	27355	NM_002843	5795	Hs.318547	NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1	protein tyrosine phosphatase, receptor type J	protein-coding	nan	2.192	1.352	0.110	1.071	0.475	1.116	0.350	0.183	0.409	0.262	0.544	1.601	0.302	0.156	2.703	3.249	4.090	5.943	1.181	1.222	1.686	0.460	1.618	1.716	0.999	1.483	2.501	2.652	1.515	1.450	2.361	3.588	0.625	0.628	0.553	nan	1.910	1.075	2.332	2.392	0.081	0.515	1.116	0.544	0.569	0.202	2.086	0.408
216	chr1	37420703	37438654	+	0	NA	intron (NM_000831, intron 1 of 15)	intron (NM_000831, intron 1 of 15)	70166	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	glutamate ionotropic receptor kainate type subunit 3	protein-coding	0.989	nan	1.128	0.170	2.414	1.185	1.375	0.075	0.072	0.585	0.379	5.598	2.985	0.058	0.081	0.293	0.250	0.048	0.115	3.275	3.044	nan	0.756	0.162	0.110	1.274	2.022	12.546	11.584	nan	1.018	0.702	0.500	1.421	1.320	0.692	1.370	1.960	nan	0.641	0.411	0.432	0.182	1.375	5.598	0.433	0.260	0.066	0.344
7932	chr8	129178370	129198647	+	0	NA	Intergenic	Intergenic	26146	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA	nan	nan	nan	0.483	0.783	0.333	0.068	1.418	0.127	0.093	0.045	0.069	nan	0.423	0.073	3.709	3.056	1.698	8.184	0.452	0.522	2.110	0.456	nan	nan	0.451	0.604	2.960	1.816	0.384	0.210	0.685	0.658	0.192	0.466	0.195	0.246	0.319	0.347	0.335	0.102	0.023	0.265	0.068	0.069	0.047	0.686	0.088	0.128
3351	chr17	29643388	29648271	+	0	NA	exon (NM_001003927, exon 3 of 3)	exon (NM_001003927, exon 3 of 3)	2938	NM_001003927	2123	Hs.591198	NM_014210	ENSG00000126860	EVI2A	EVDA|EVI-2A|EVI2	ecotropic viral integration site 2A	protein-coding	nan	nan	nan	0.294	0.442	0.216	0.052	1.498	0.033	0.032	0.151	0.122	0.384	0.066	0.097	0.614	0.659	0.491	0.837	0.403	0.375	0.461	0.210	1.030	0.926	1.231	1.762	0.532	0.556	0.682	0.482	8.178	9.982	0.098	0.220	0.498	nan	0.592	0.479	0.192	0.186	0.019	0.191	0.052	0.122			8.078	0.075
7660	chr8	42395486	42411500	+	0	NA	intron (NM_001135675, intron 2 of 3)	intron (NM_001135675, intron 2 of 3)	-6137	NM_006749	6575	Hs.653173	NM_006749	ENSG00000168575	SLC20A2	GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1	solute carrier family 20 member 2	protein-coding	1.867	nan	2.409	1.528	1.303	0.557	1.459	1.485	0.223	0.664	0.337	1.788	2.656	1.463	0.138	1.823	2.165	1.812	2.772	3.021	2.824	2.332	1.025	4.145	3.977	1.296	1.918	1.644	2.351	2.942	3.015	0.744	1.673	2.254	2.541	2.625	2.543	2.859	1.365	0.754	1.894	0.487	0.286	1.459	1.788	0.240	1.662	0.331	0.968
5116	chr21	38429497	38448495	+	0	NA	intron (NM_016430, intron 5 of 5)	intron (NM_016430, intron 5 of 5)	-2630	NR_131189	105372795	Hs.528019	NR_131189		LOC105372795	-	uncharacterized LOC105372795	ncRNA	3.965	2.978	3.781	2.516	3.629	1.737	3.741	0.735	0.095	1.493	0.711	4.819	12.408	1.140	0.087	2.935	2.989	1.940	2.889	8.006	7.045	5.157	2.010	3.852	3.853	2.261	2.787	3.219	6.423	4.032	4.583	1.549	2.825	5.772	6.324	3.513	5.351	nan	2.464	5.727	4.856	1.523	1.814	3.741	4.819	0.685	1.782	0.809	1.446
1951	chr12	53334870	53352113	+	0	NA	non-coding (NR_045962, exon 1 of 9)	non-coding (NR_045962, exon 1 of 9)	159	NR_045962	3856	Hs.533782	NM_002273	ENSG00000170421	KRT8	CARD2|CK-8|CK8|CYK8|K2C8|K8|KO	keratin 8	protein-coding	nan	1.657	1.133	2.133	1.592	0.838	0.653	0.257	0.159	0.775	0.474	3.498	3.077	0.125	0.085	nan	4.627	2.522	3.226	3.377	nan	5.029	1.982	2.985	3.079	0.145	nan	7.662	nan	0.521	0.264	1.390	2.389	0.810	1.088	0.190	0.312	2.145	1.251	0.505	2.518	0.127	0.561	0.653	3.498	0.057	0.871	0.992	0.040
3600	chr17	78362312	78373216	+	0	NA	3' UTR (NM_001256071, exon 68 of 68)	3' UTR (NM_001256071, exon 68 of 68)	-21203	NM_001164638	284131	Hs.389678	NM_173627	ENSG00000173818	ENDOV	-	endonuclease V	protein-coding	1.133	0.887	1.125	0.269	0.514	0.208	0.448	0.242	0.206	0.173	0.115	0.157	0.666	0.128	0.130	4.143	6.889	0.598	0.575	0.676	0.814	0.634	0.201	0.421	0.468	nan	0.739	0.477	0.755	0.734	0.413	1.837	3.018	0.131	0.102	0.459	0.816	nan	0.570	0.010	0.218	0.017	0.102	0.448	0.157	0.072	0.130	2.268	0.231
5326	chr3	13055871	13071508	+	0	NA	intron (NM_001134382, intron 1 of 14)	intron (NM_001134382, intron 1 of 14)	-35153	NM_001330619	9922	Hs.475506	NM_014869	ENSG00000144711	IQSEC1	ARF-GEP100|ARFGEP100|BRAG2|GEP100	IQ motif and Sec7 domain 1	protein-coding	nan	1.197	1.198	0.782	0.751	0.422	0.270	0.165	0.021	0.389	0.130	0.475	0.558	0.041	0.081	0.429	0.631	0.296	0.391	0.501	0.579	1.941	0.336	0.395	0.313	0.406	0.643	1.954	2.138	5.727	6.689	0.293	0.282	1.147	1.163	1.238	3.057	1.159	0.713	1.080	0.746	0.207	0.269	0.270	0.475	0.803	0.496	0.019	0.848
2766	chr14	100841120	100893550	+	0	NA	intron (NM_024515, intron 2 of 6)	intron (NM_024515, intron 2 of 6)	24502	NM_024515	79446	Hs.497600	NM_024515	ENSG00000176473	WDR25	C14orf67	WD repeat domain 25	protein-coding	2.108	1.713	1.165	0.573	0.897	0.493	2.680	0.895	0.199	0.373	0.213	0.326	1.099	0.416	0.134	0.474	0.428	0.600	1.043	0.937	1.072	1.088	0.369	0.390	0.404	0.791	1.407	1.447	1.717	1.627	1.275	0.545	0.725	1.202	1.860	0.552	1.226	1.785	0.993	1.140	0.350	0.193	0.178	2.680	0.326	0.797	1.728	0.177	0.297
7135	chr7	3792753	3807923	+	0	NA	intron (NM_152744, intron 4 of 44)	Ricksha_0|DNA|MuDR	-368979	NM_001079653	221935	Hs.653013	NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding	1.125	1.262	1.447	0.306	0.227	0.153	0.159	0.094	0.085	0.223	0.230	0.492	nan	0.049	0.164	5.959	4.918	5.741	nan	0.436	0.622	nan	0.458	0.787	0.767	0.246	0.257	nan	0.493	0.243	0.132	2.713	4.030	0.812	1.303	0.094	0.221	1.063	0.711	0.044	0.109	0.063	0.200	0.159	0.492	0.045	0.126	3.006	0.057
5526	chr3	127307796	127320289	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-3158	NM_004526	4171	Hs.477481	NM_004526	ENSG00000073111	MCM2	BM28|CCNL1|CDCL1|D3S3194|DFNA70|MITOTIN|cdc19	minichromosome maintenance complex component 2	protein-coding	4.897	nan	2.780	2.611	3.906	2.135	2.675	3.278	0.504	3.108	1.374	2.916	3.694	1.405	0.063	3.497	3.290	3.211	5.268	5.728	5.326	9.997	4.888	6.120	6.237	3.568	nan	3.567	5.623	8.101	8.938	5.588	7.499	1.839	2.376	5.016	5.797	2.742	1.511	3.449	3.078	0.390	1.673	2.675	2.916	0.964	1.243	1.921	2.083
3661	chr18	9904682	9917064	+	0	NA	Intergenic	Intergenic	-3082	NM_194434	9218	Hs.165195	NM_003574	ENSG00000101558	VAPA	VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding	2.420	2.082	2.126	1.965	1.391	0.519	0.769	1.352	0.171	0.710	0.489	2.061	nan	1.683	0.161	1.778	2.447	2.037	3.389	3.526	2.792	nan	1.635	4.216	3.914	0.944	nan	1.445	2.291	nan	2.164	0.696	1.621	4.258	5.701	1.495	nan	nan	1.098	0.978	1.749	1.300	1.301	0.769	2.061	0.559	0.787	0.409	0.766
1794	chr12	6711332	6728256	+	0	NA	Intergenic	AluSp|SINE|Alu	-3195	NM_001273	1108	Hs.162233	NM_001273	ENSG00000111642	CHD4	CHD-4|Mi-2b|Mi2-BETA|SIHIWES	chromodomain helicase DNA binding protein 4	protein-coding	3.019	nan	nan	5.592	3.417	1.784	3.618	0.944	0.142	1.676	0.969	4.111	5.823	1.139	0.119	2.409	3.086	1.497	1.945	nan	6.627	6.820	2.314	3.873	3.893	2.568	3.385	4.946	5.034	5.323	4.589	2.012	3.299	2.306	2.041	2.675	nan	1.773	0.774	2.964	4.004	0.717	3.105	3.618	4.111	2.350	1.168	2.483	2.464
4755	chr2	233484845	233500067	+	0	NA	intron (NM_001243252, intron 1 of 3)	Charlie1a|DNA|hAT-Charlie	-5751	NM_001308395	80303	Hs.516769	NM_025202	ENSG00000115468	EFHD1	MST133|MSTP133|PP3051|SWS2	EF-hand domain family member D1	protein-coding	0.863	nan	1.455	0.255	0.272	0.190	0.387	0.093	0.147	0.687	0.524	0.735	6.194	1.360	0.113	1.076	1.432	0.596	1.017	0.708	0.767	0.675	0.230	0.402	0.393	0.463	0.728	0.496	nan	0.422	0.291	0.422	0.588	0.989	0.830	0.276	0.378	1.717	0.727	1.167	0.058	0.252	0.094	0.387	0.735	0.080	0.300	0.111	0.089
676	chr1	176739818	176745098	+	0	NA	intron (NM_020318, intron 17 of 22)	intron (NM_020318, intron 17 of 22)	256123	NR_030163	574441		NR_030163	ENSG00000202609	MIR488	MIRN488|hsa-mir-488|mir-488	microRNA 488	ncRNA	nan	nan	nan	0.082	0.241	0.107	0.145	0.156	0.093	0.080	0.155	0.091	0.365		0.071	2.721	2.779	13.474	3.598	nan	0.481	0.087	0.113	1.929	1.627	0.524	0.821	0.361	0.359	0.423	0.158	1.783	7.117	0.094	0.144	0.626	nan	0.572	0.650		0.120	0.017	0.015	0.145	0.091	0.056	0.097	5.906	0.534
7653	chr8	38422589	38445828	+	0	NA	Intergenic	MER41A|LTR|ERV1	24567	NR_003129	286140	Hs.512071	NR_003129		RNF5P1	-	ring finger protein 5 pseudogene 1	pseudo	0.647	1.834	nan	0.510	0.509	0.251	0.478	0.131	0.119	0.514	0.262	0.499	0.407	0.061	0.112	0.465	0.508	0.238	0.346	0.692	0.674	4.486	1.414	0.370	0.353	0.247	0.439	0.793	0.602	0.361	0.201	0.206	0.205	0.779	1.060	0.226	0.324	2.104	1.184	0.029	0.180	0.115	0.113	0.478	0.499	0.330	0.039	0.038	0.070
3191	chr16	82660357	82679265	+	0	NA	intron (NM_001257, intron 1 of 13)	L2b|LINE|L2	9412	NM_001257	1012	Hs.654386	NM_001257	ENSG00000140945	CDH13	CDHH|P105	cadherin 13	protein-coding	nan	0.470	1.113	0.555	0.893	0.609	0.965	0.513	0.095	0.232	0.092	2.378	0.441	0.034	0.083	0.264	0.136	0.215	0.775	0.600	0.611	0.058	0.072	0.731	0.693	0.067	0.204	1.187	0.960	0.574	0.343	0.177	0.376	0.282	0.267	0.240	0.536	0.239	0.323	0.009	0.062	0.050	0.105	0.965	2.378	0.041	0.032	0.115	0.065
3306	chr17	17407363	17451048	+	0	NA	intron (NM_001267551, intron 2 of 6)	AluSx3|SINE|Alu	-29496	NM_001199989	51655	Hs.25829	NM_016084	ENSG00000108551	RASD1	AGS1|DEXRAS1|MGC:26290	ras related dexamethasone induced 1	protein-coding	1.255	0.944	1.238	0.868	1.234	0.549	1.057	0.077	0.070	0.369	0.258	2.418	1.288	0.056	0.067	1.402	2.992	0.357	nan	2.254	2.771	2.983	1.205	0.348	0.375	0.421	0.818	3.337	3.876	nan	1.652	0.500	0.771	0.375	0.544	0.734	1.377	1.711	0.879	3.529	0.788	0.119	0.129	1.057	2.418	0.942	2.989	0.590	0.484
2640	chr14	61718633	61737069	+	0	NA	Intergenic	Intergenic	20679	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding	nan	nan	1.169	0.467	0.507	0.243	1.562	0.968	0.235	0.170	0.112	0.567	1.705	0.129	0.101	0.312	0.221	0.344	0.420	0.947	1.066	0.438	0.203	nan	0.705	0.319	0.505	1.389	nan	0.864	0.323	0.207	0.321	0.357	0.475	0.256	0.422	0.779	0.656	0.716	3.680	0.052	0.120	1.562	0.567	0.090	0.275	0.059	0.047
2700	chr14	78772099	78814962	+	0	NA	intron (NR_073547, intron 4 of 20)	intron (NR_073547, intron 4 of 20)	-76544	NM_004796	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding	1.534	0.955	0.875	0.068	2.293	1.096	1.365	0.122	0.100	0.326	0.278	1.108	1.166	0.098	0.163	0.343	0.173	0.116	0.135	1.383	1.355	1.625	0.379	0.200	0.183	0.963	1.151	0.799	nan	1.626	1.286	0.134	0.199	1.961	1.799	0.373	0.974	3.330	nan	3.980	0.894	0.732	2.125	1.365	1.108	0.244	0.021	0.032	0.264
6877	chr6	99271468	99296397	+	0	NA	exon (NM_005604, exon 1 of 1)	exon (NM_005604, exon 1 of 1)	1352	NM_005604	5454	Hs.182505	NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding	nan	1.873	nan	3.327	4.449	2.367	1.293	0.123	0.058	1.129	0.786	1.723	6.888	0.139	0.099	1.413	2.094	0.997	1.201	2.139	1.412	nan	1.149	0.939	0.932	1.166	nan	1.494	2.717	nan	2.461	0.909	2.435	0.929	0.603	0.673	1.081	1.120	0.706	0.405	2.364	0.149	0.248	1.293	1.723	0.019	1.093	0.944	0.486
7034	chr6	148122456	148191657	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	327228	NM_001030060	389432	Hs.567973	NM_001030060	ENSG00000203727	SAMD5	dJ875H10.1	sterile alpha motif domain containing 5	protein-coding	nan	0.846	nan	0.106	0.187	0.079	0.281	0.439	0.095	0.084	0.098	0.111	0.208	0.035	0.099	0.427	0.319	0.692	0.858	0.438	0.521	4.834	2.433	0.278	0.278	0.205	0.294	0.320	0.286	1.503	0.910	0.227	0.465	0.374	0.425	0.289	0.518	0.382	0.385	0.130	0.094	0.069	0.052	0.281	0.111	0.066	0.054	0.102	0.203
4312	chr2	44394044	44398870	+	0	NA	intron (NM_177969, intron 1 of 4)	CpG	515	NM_002706	5495	Hs.416769	NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding	4.998	nan	3.735	3.892	4.661	2.285	2.416	2.691	0.266	3.936	1.490	3.825	10.438	4.579	0.140	5.198	5.427	5.982	9.470	nan	7.934	9.426	7.944	21.951	23.331	3.855	4.452	7.719	13.628	10.102	9.272	3.713	5.402	3.413	4.601	6.232	nan	nan	1.349	2.729	4.951	0.377	2.085	2.416	3.825	1.431	1.833	1.252	1.516
123	chr1	19795085	19814861	+	0	NA	intron (NM_001206541, intron 1 of 8)	intron (NM_001206541, intron 1 of 8)	6228	NM_001282162	832	Hs.432760	NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line beta subunit	protein-coding	1.796	1.164	nan	1.529	1.037	0.623	0.930	0.660	0.253	0.294	0.303	0.622	3.014	1.240	0.115	1.005	1.716	1.254	1.794	2.330	2.444	0.984	0.339	2.804	nan	1.335	nan	5.238	5.830	nan	0.908	0.603	1.258	0.414	0.289	0.947	1.800	0.847	0.572	1.176	1.943	0.126	0.370	0.930	0.622	0.354	0.631	0.261	0.445
304	chr1	52519918	52523698	+	0	NA	promoter-TSS (NM_015913)	promoter-TSS (NM_015913)	35	NR_046406	51060	Hs.476033	NM_015913	ENSG00000117862	TXNDC12	AG1|AGR1|ERP16|ERP18|ERP19|PDIA16|TLP19|hAG-1|hTLP19	thioredoxin domain containing 12	protein-coding	9.908	4.125	7.486	11.166	9.600	4.776	7.059	6.311	0.382	6.575	2.586	3.774	20.242	10.479	0.288	8.845	8.050	8.259	12.365	15.992	11.942	13.879	7.646	20.808	22.752	8.692	10.450	12.282	19.161	8.463	11.138	4.849	9.377	5.579	5.614	9.123	13.690	5.254	3.152	8.183	8.484	0.733	5.670	7.059	3.774	2.449	3.925	3.964	4.712
5828	chr4	5950682	5966446	+	0	NA	Intergenic	Intergenic	-33509	NR_039608	100616201		NR_039608	ENSG00000263631	MIR378D1	mir-378d-1	microRNA 378d-1	ncRNA	1.302	0.862	nan	1.204	0.976	0.489	0.971	0.071	0.072	0.467	0.255	1.405	1.124	0.034	0.066	1.490	2.294	0.226	0.291	1.553	1.337	nan	0.875	0.527	0.612	0.325	0.556	3.265	3.353	1.225	1.035	0.803	1.019	0.979	1.079	0.631	1.242	nan	0.778	0.657	3.528	0.213	0.180	0.971	1.405	0.370	0.463	0.320	0.071
1631	chr11	111241658	111277757	+	0	NA	Intergenic	Intergenic	-9550	NM_006235	5450	Hs.654525	NM_006235	ENSG00000110777	POU2AF1	BOB1|OBF-1|OBF1|OCAB	POU class 2 associating factor 1	protein-coding	0.737	1.174	0.857	0.265	2.662	1.462	0.206	0.112	0.041	0.186	0.207	0.729	1.335	0.043	0.108	2.129	nan	1.498	3.328	0.584	0.774	0.769	0.250	0.335	0.317	2.484	nan	0.722	0.523	0.437	0.243	0.947	1.574	0.855	1.028	0.192	0.419	0.857	0.512	1.434	0.136	0.249	0.157	0.206	0.729	0.531	0.222	0.896	0.051
2294	chr13	48634299	48648215	+	0	NA	Intergenic	MER61-int|LTR|ERV1	-10016	NR_046511	100873965	Hs.616241	NR_046511	ENSG00000229111	MED4-AS1	MED4-AS	MED4 antisense RNA 1	ncRNA	1.129	0.927	1.105	0.083	0.166	0.058	0.086	0.087	0.117	0.057	0.073	0.292	0.500	0.078	0.095	0.445	0.375	0.128	0.192	0.447	0.588	0.234	0.158	0.182	0.194	0.177	0.428	0.099	0.164	5.112	4.966	0.149	0.272	0.103	0.105	1.460	4.144	0.604	0.524	0.183	0.091	0.007	0.069	0.086	0.292	0.850	0.088	0.050	0.810
7679	chr8	53469224	53480019	+	0	NA	intron (NM_207413, intron 1 of 4)	intron (NM_207413, intron 1 of 4)	3400	NM_207413	389658	Hs.527111	NM_207413	ENSG00000196711	FAM150A	AUGA|AUGB|UNQ9433	family with sequence similarity 150 member A	protein-coding	0.803	nan	0.828	0.243	0.215	0.105	0.191	0.083	0.078	0.176	0.105	0.133	1.397	0.141	0.123	6.535	9.457	1.443	0.384	0.733	0.732	0.392	0.152	8.997	9.342	0.112	nan	0.190	0.234	0.480	0.440	6.131	12.714	0.106	0.134	0.315	0.480	0.574	0.613	0.020	0.091	0.028	0.140	0.191	0.133	0.009	0.038	6.748	0.058
8026	chr9	4289361	4301097	+	0	NA	intron (NM_001042413, intron 1 of 10)	intron (NM_001042413, intron 1 of 10)	4806	NM_001042413	169792	Hs.162125	NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding	1.255	4.805	0.998	0.387	0.623	0.259	0.676	2.726	0.289	0.411	0.290	0.501	1.544	1.433	0.112	0.327	0.151	5.737	12.207	0.909	0.600	0.340	0.092	0.859	1.048	1.461	2.104	0.686	1.117	0.406	0.314	0.355	0.598	0.415	0.464	0.052	nan	1.153	1.123	0.260	0.136	0.048	0.122	0.676	0.501	0.092	2.300	0.236	0.031
839	chr1	209533132	209544783	+	0	NA	Intergenic	Intergenic	40156	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA	0.882	1.227	2.475	0.135	0.400	0.248	0.572	0.089	0.098	0.219	0.167	0.093	1.092	0.009	0.118	0.499	0.260	0.802	3.478	0.430	0.541	2.336	0.870	nan	nan	3.665	4.514	0.484	0.421	0.231	0.131	0.123	0.140	0.114	0.177	0.345	0.538	0.766	0.771	0.465	0.055	0.008	0.054	0.572	0.093	0.125	0.015	0.025	0.085
5175	chr22	16848753	16862640	+	0	NA	Intergenic	HSATII|Satellite|Satellite	218004	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding	5.001	nan	4.453	0.614	1.245	0.831	0.931	0.797	7.732	0.891	2.136	0.439	2.340	0.399	2.377	1.444	0.543	0.408	0.516	0.979	1.741	0.568	0.613	0.719	0.711	1.318	1.634	1.018	1.129	1.776	0.408	0.551	1.301	0.411	0.704	0.955	1.523	0.330	0.670	0.202	0.506	0.428	0.256	0.931	0.439	0.162	0.212	0.755	0.635
5844	chr4	17284324	17292105	+	0	NA	Intergenic	Intergenic	-100534	NR_125919	101929123	Hs.638913	NR_125919	ENSG00000250819	LOC101929123	-	uncharacterized LOC101929123	ncRNA	nan	nan	nan	0.101	0.052		0.054	0.174	0.103	0.483	0.274	0.015	0.188	0.081	0.120	0.370	0.159	0.547	0.525	0.191	0.135	0.118	0.078	0.278	0.475	0.079	0.193	0.091	0.084	0.392	0.380	0.130	0.095	0.064	0.046	0.071	0.164	5.076	2.509	0.021	0.046	0.012	0.010	0.054	0.015	0.161	0.223	0.077	0.066
5278	chr22	41089837	41143908	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	41690	NM_005297	2847	Hs.248122	NM_005297	ENSG00000128285	MCHR1	GPR24|MCH-1R|MCH1R|SLC-1|SLC1	melanin concentrating hormone receptor 1	protein-coding	1.084	nan	1.020	0.720	2.544	1.250	0.466	0.184	0.139	0.360	0.285	0.870	1.838	0.124	0.121	0.286	0.244	0.266	0.776	0.740	0.689	1.895	0.539	0.172	0.205	0.892	nan	1.070	1.441	nan	0.727	0.201	0.236	2.278	3.207	0.492	1.154	0.872	0.461	0.842	0.749	1.127	0.034	0.466	0.870	0.433	0.111	0.057	0.328
1829	chr12	11800587	11808094	+	0	NA	intron (NM_001987, intron 1 of 7)	intron (NM_001987, intron 1 of 7)	1552	NM_001987	2120	Hs.504765	NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant 6	protein-coding	4.044	3.244	5.084	12.486	5.219	2.778	2.607	1.565	0.136	4.473	2.268	8.557	13.722	3.685	0.188	4.397	5.555	7.358	10.056	nan	10.919	10.709	4.964	13.143	13.270	2.757	3.694	11.106	19.496	4.892	5.320	3.800	6.381	2.521	2.072	2.862	2.588	2.739	1.653	4.819	4.074	0.517	0.869	2.607	8.557	0.311	2.025	3.275	1.225
5803	chr3	195619728	195642224	+	0	NA	intron (NM_005781, intron 1 of 14)	AluJb|SINE|Alu	4904	NM_005781	10188	Hs.518513	NM_005781	ENSG00000061938	TNK2	ACK|ACK-1|ACK1|p21cdc42Hs	tyrosine kinase non receptor 2	protein-coding	nan	2.260	2.641	3.432	1.961	0.917	1.026	0.793	0.216	2.165	0.796	2.172	nan	0.642	0.083	0.774	1.200	1.039	1.502	3.336	3.017	2.362	1.117	1.664	1.749	1.231	1.765	3.807	4.871	2.634	2.374	0.769	1.321	1.428	1.795	1.427	2.995	2.276	1.235	1.900	1.398	0.313	0.421	1.026	2.172	0.380	0.983	0.393	1.040
3698	chr18	24531425	24545186	+	0	NA	intron (NM_031422, intron 4 of 5)	intron (NM_031422, intron 4 of 5)	-92497	NM_001317384	361	Hs.315369	NM_001650	ENSG00000171885	AQP4	MIWC|WCH4	aquaporin 4	protein-coding	0.669	0.816	0.778	0.102	0.154	0.116	0.679	0.048	0.046	0.126	0.108	0.052	0.294	0.047	0.079	0.531	0.318	1.127	nan	0.411	0.416	6.078	1.767	0.239	0.221	0.131	0.158	0.163	0.250	0.477	0.156	0.267	0.189	0.460	0.707	0.208	0.471	0.926	1.088		0.039	0.055	0.085	0.679	0.052	0.028	0.022	0.078	0.060
8039	chr9	8670194	8683382	+	0	NA	intron (NM_001040712, intron 1 of 29)	AluSp|SINE|Alu	57158	NM_001171025	5789	Hs.446083	NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type D	protein-coding	0.750	1.850	0.780	0.100	0.380	0.208	0.341	0.081	0.062	0.272	0.131	0.163	0.327	0.041	0.062	0.218	0.075	0.503	1.569	0.414	0.577	1.980	0.466	0.130	0.146	1.097	1.482	0.375	0.423	0.600	0.228	0.121	0.184	3.497	5.852	0.359	nan	1.309	1.070	0.450	0.121	1.201	0.172	0.341	0.163	0.029	0.062	0.053	0.138
5876	chr4	41358053	41372426	+	0	NA	intron (NM_014988, intron 1 of 26)	intron (NM_014988, intron 1 of 26)	2591	NM_001289122	22998	Hs.335163	NM_014988	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding	1.306	nan	nan	2.628	1.353	0.727	0.162	1.021	0.180	1.286	0.699	1.807	4.710	0.100	0.103	1.067	1.489	1.514	2.152	1.103	0.761	0.446	0.110	0.250	0.287	2.330	3.138	0.821	1.135	1.669	1.824	0.320	0.715	0.096	0.108	0.962	1.851	4.084	2.243	1.561	2.129		0.645	0.162	1.807	0.787	1.057	0.214	0.574
1918	chr12	34835356	34854304	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	669614	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding	6.437	nan	6.350	1.125	1.544	0.846	1.154	0.890	4.344	0.847	1.497	0.712	1.858	0.509	1.564	4.241	2.157	3.448	4.803	3.509	3.976	1.671	1.277	2.896	2.748	2.324	2.952	2.334	1.963	4.237	1.635	1.828	3.038	0.658	1.055	1.855	2.352	1.266	1.979	0.270	0.483	0.210	0.433	1.154	0.712	0.220	0.322	0.340	0.187
2755	chr14	96732096	96742446	+	0	NA	Intergenic	Intergenic	14724	NM_000710	623	Hs.525572	NM_000710	ENSG00000100739	BDKRB1	B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1	bradykinin receptor B1	protein-coding	1.853	0.921	nan	0.336	0.397	0.141	0.446	2.186	0.244	0.124	0.093	0.798	2.845	0.074	0.115	0.347	0.226	0.278	0.907	1.633	1.600	0.864	0.252	0.583	0.606	0.726	0.952	1.432	1.371	2.467	2.297	0.241	0.334	1.357	1.306	0.150	0.255	nan	0.776	0.322	0.345	0.189	0.071	0.446	0.798	0.393	3.215	0.067	0.095
3237	chr17	1616877	1629137	+	0	NA	intron (NM_001163673, intron 1 of 9)	intron (NM_001163673, intron 1 of 9)	3190	NM_001163673	124997	Hs.234572	NM_152348	ENSG00000167716	WDR81	CAMRQ2|PPP1R166|SORF-2	WD repeat domain 81	protein-coding	2.900	1.726	1.909	1.771	2.706	1.161	1.774	2.010	0.340	0.497	0.310	2.523	4.374	2.908	0.123	3.309	2.649	4.449	6.481	2.835	2.130	5.590	2.661	8.708	9.443	1.600	2.162	4.939	7.752	2.734	2.178	0.942	0.975	1.458	2.326	5.886	5.761	1.416	0.639	1.305	1.943	0.359	0.485	1.774	2.523	1.866	4.177	0.430	2.899
4487	chr2	127754048	127772537	+	0	NA	Intergenic	LTR39|LTR|ERV1	76349	NM_001320634	274	Hs.193163	NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding	1.005	nan	nan	0.057	0.153	0.052	0.122	0.121	0.035	0.076	0.124	0.059	0.292	0.065	0.070	0.252	0.165	0.159	0.266	0.236	0.265	0.137	0.096	0.172	0.162	0.154	0.305	0.312	0.322	2.220	2.321	0.124	0.179	0.029	0.033	1.797	4.873	0.314	0.365	0.009	0.039		0.026	0.122	0.059	0.053	0.016	0.020	1.929
3150	chr16	57638846	57673942	+	0	NA	intron (NM_005682, intron 1 of 14)	intron (NM_005682, intron 1 of 14)	2484	NM_001145770	9289	Hs.513633	NM_005682	ENSG00000205336	ADGRG1	BFPP|BPPR|GPR56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	nan	nan	nan	1.335	0.652	0.298	1.276	0.167	0.076	0.803	0.350	1.268	1.147	0.145	0.054	0.993	1.356	0.122	0.258	1.075	0.951	2.201	0.644	1.346	1.462	0.443	nan	nan	nan	nan	2.926	0.629	0.884	0.908	1.069	0.426	nan	nan	1.021	1.018	0.723	0.283	0.147	1.276	1.268	0.730	1.318	0.419	0.152
4678	chr2	206546490	206552482	+	0	NA	intron (NM_018534, intron 1 of 15)	intron (NM_018534, intron 1 of 15)	2262	NM_201264	8828	Hs.471200	NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding	5.258	nan	5.445	0.699	0.640	0.283	1.011	0.555	0.053	0.208	0.067	0.437	4.863	0.054	0.058	0.399	0.371	0.590	1.395	1.117	0.785	1.984	0.441	10.250	10.126	4.042	6.327	1.256	2.156	3.489	7.305	0.593	1.110	2.317	1.657	2.012	3.463	0.936	0.570	5.143	0.163	0.765	1.694	1.011	0.437	3.220	0.317	0.423	1.983
703	chr1	182356995	182368755	+	0	NA	Intergenic	Intergenic	-1534	NM_001033044	2752	Hs.132016	NM_002065	ENSG00000135821	GLUL	GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding	nan	nan	2.925	3.630	2.118	1.159	2.869	2.166	0.367	1.631	0.821	1.731	7.855	0.754	0.110	3.470	4.157	6.120	8.851	5.648	nan	2.820	1.260	nan	7.887	2.805	3.417	2.960	4.480	2.761	3.337	5.615	11.153	2.933	2.914	2.809	5.233	1.944	1.067	2.380	5.071	0.940	1.685	2.869	1.731	0.684	1.054	3.846	1.756
2729	chr14	89874947	89899304	+	0	NA	TTS (NR_036500)	TTS (NR_036500)	3427	NR_036500	400236	Hs.585207	NR_036500	ENSG00000258920	FOXN3-AS1	-	FOXN3 antisense RNA 1	ncRNA	3.865	1.746	nan	0.766	1.227	0.601	0.842	3.122	0.324	0.684	0.345	1.238	3.377	1.622	0.121	0.829	1.078	1.656	2.439	2.703	2.133	1.880	0.729	2.042	1.932	1.806	2.879	3.255	4.719	2.111	2.139	0.989	2.542	3.577	3.563	0.687	0.834	nan	1.359	1.580	0.708	1.036	2.239	0.842	1.238	0.292	0.797	2.114	0.135
3164	chr16	70203482	70211639	+	0	NA	promoter-TSS (NR_126007)	promoter-TSS (NR_126007)	-209	NR_126007	400541	Hs.461183	NR_126007	ENSG00000247228	LOC400541	-	uncharacterized LOC400541	ncRNA	0.804	0.407	nan	0.221	0.347	0.138	0.267	0.100	0.069	0.039	0.075	0.102	0.241	0.014	0.067	0.371	0.328	0.150	0.258	0.218	0.252	0.365	0.203	0.390	0.372	0.183	0.427	0.316	0.615	0.445	0.349	0.330	0.226	0.063	0.080	0.213	0.428	0.365	0.467	0.141	0.099	0.035	9.297	0.267	0.102	0.250	0.050	0.024	0.016
5575	chr3	139876074	139937863	+	0	NA	intron (NM_022131, intron 2 of 16)	L2c|LINE|L2	252941	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding	1.334	nan	nan	0.347	1.173	0.590	0.458	0.471	0.138	0.302	0.309	0.648	0.470	0.035	0.074	0.380	0.245	1.219	0.745	1.079	1.065	5.315	1.439	0.216	0.232	4.946	5.530	0.737	0.593	nan	1.634	0.299	0.475	0.665	0.553	0.835	2.470	0.780	0.527	1.281	0.328	0.217	0.773	0.458	0.648	0.697	0.206	0.082	0.495
7228	chr7	28991935	28999674	+	0	NA	exon (NM_014817, exon 3 of 3)	exon (NM_014817, exon 3 of 3)	2225	NM_014817	9865	Hs.744120	NM_014817	ENSG00000255690	TRIL	-	TLR4 interactor with leucine rich repeats	protein-coding	4.546	2.547	11.815	0.689	0.633	0.409	0.589	0.544	0.110	0.245	0.333	0.679	1.395	0.042	0.083	0.844	1.191	0.461	nan	1.472	0.980	3.350	0.717	3.022	3.153	0.125	0.256	0.630	1.258	0.337	0.181	1.232	2.180	2.901	2.721	0.160	nan	0.955	0.810	0.870	0.576	0.541	0.417	0.589	0.679	0.216	0.418	0.551	0.080
6897	chr6	109264001	109272138	+	0	NA	intron (NM_032131, intron 12 of 17)	Tigger15a|DNA|TcMar-Tigger	-22763	NR_104137	101929716		NR_104137		ARMC2-AS1	-	ARMC2 antisense RNA 1	ncRNA	3.419	nan	nan	0.166	0.269	0.137	0.218	0.111	0.079	0.269	0.131	0.599	0.469	0.040	0.103	0.524	0.468	0.413	1.615	0.357	nan	1.232	0.632	0.248	0.308	5.629	5.784	2.194	3.855	nan	0.511	1.045	1.801	5.728	6.314	0.517	0.851	0.446	0.467	0.469	0.469	2.000	0.080	0.218	0.599	0.314	4.078	3.721	0.124
3304	chr17	17301124	17347438	+	0	NA	Intergenic	Intergenic	-56019	NM_018019	55090	Hs.244595	NM_018019	ENSG00000141026	MED9	MED25	mediator complex subunit 9	protein-coding	1.622	1.188	1.289	1.668	0.825	0.420	0.495	0.116	0.059	0.603	0.210	2.210	0.926	0.056	0.080	0.465	0.776	0.365	nan	3.058	3.578	2.479	0.779	0.198	0.206	0.884	1.419	3.162	2.997	nan	1.936	0.201	0.183	0.674	0.910	1.104	3.689	1.492	0.850	0.753	0.670	0.135	0.106	0.495	2.210	0.345	5.403	0.034	1.381
1461	chr11	64083582	64092230	+	0	NA	intron (NM_181651, intron 2 of 4)	L2c|LINE|L2	2346	NM_181652	25824	Hs.502823	NM_012094	ENSG00000126432	PRDX5	ACR1|AOEB166|B166|HEL-S-55|PLP|PMP20|PRDX6|PRXV|SBBI10|prx-V	peroxiredoxin 5	protein-coding	nan	2.181	3.020	3.263	3.370	1.688	3.594	1.547	0.224	1.569	0.948	2.547	7.432	3.819	0.132	4.915	7.701	3.991	5.617	5.097	4.764	4.298	2.030	5.859	6.260	2.687	3.862	4.379	5.516	2.957	2.952	4.160	4.954	2.352	2.852	1.439	2.795	1.730	1.052	2.874	2.549	0.469	1.605	3.594	2.547	1.474	2.017	1.494	0.942
2487	chr14	23463851	23505692	+	0	NA	Intergenic	Intergenic	-5361	NM_001282970	60686	Hs.255874	NM_021944	ENSG00000100802	C14orf93	-	chromosome 14 open reading frame 93	protein-coding	nan	1.332	1.418	2.062	1.221	0.688	1.066	0.913	0.290	0.484	0.346	1.362	2.256	1.412	0.158	1.156	1.225	1.692	2.208	1.909	2.128	1.977	0.935	3.793	4.033	2.557	3.002	2.184	nan	7.695	7.277	1.218	1.527	1.536	1.755	2.374	4.412	1.921	0.975	1.692	1.376	0.339	1.246	1.066	1.362	1.994	0.873	0.549	1.951
3188	chr16	81477360	81483491	+	0	NA	intron (NM_198390, intron 1 of 20)	intron (NM_198390, intron 1 of 20)	1650	NM_198390	80790	Hs.594095	NM_030629	ENSG00000153815	CMIP	TCMIP	c-Maf inducing protein	protein-coding	nan	3.830	4.098	6.398	2.753	1.387	6.643	0.889	0.186	2.426	1.170	7.154	6.528	2.414	0.098	1.533	3.086	1.476	2.090	6.590	6.254	3.109	0.993	12.404	11.769	1.355	2.007	2.091	3.623	4.283	4.286	1.897	4.044	1.092	0.935	1.045	1.998	2.060	0.965	2.154	3.816	0.327	1.749	6.643	7.154	1.549	1.885	1.809	0.499
7322	chr7	73151516	73162594	+	0	NA	Intergenic	Intergenic	-3858	NM_001145364	83451	Hs.647045	NM_148912	ENSG00000106077	ABHD11	PP1226|WBSCR21	abhydrolase domain containing 11	protein-coding	nan	3.321	2.518	6.032	8.899	4.872	4.692	1.187	0.305	4.256	2.248	11.005	13.682	1.385	0.204	5.696	7.550	7.249	nan	11.138	10.512	9.644	6.472	3.197	3.413	0.892	nan	14.179	19.436	2.556	2.898	5.132	6.507	7.024	6.855	1.871	2.675	4.669	2.397	11.291	13.362	2.321	2.753	4.692	11.005	1.507	1.444	4.203	0.472
1691	chr11	118777793	118801823	+	0	NA	Intergenic	Intergenic	-8195	NM_182557	283149	Hs.414740	NM_182557	ENSG00000186174	BCL9L	BCL9-2|DLNB11	B-cell CLL/lymphoma 9-like	protein-coding	1.496	1.749	1.855	1.265	3.244	1.639	4.068	1.678	0.208	0.950	0.573	2.517	4.400	6.361	0.167	4.252	nan	4.036	8.194	2.269	1.957	2.640	0.866	4.161	4.416	2.546	nan	4.317	5.438	1.141	1.187	8.189	12.401	3.386	3.547	1.187	2.975	1.243	0.738	4.259	2.657	1.158	0.479	4.068	2.517	0.819	0.680	11.380	0.477
5505	chr3	119916831	119935796	+	0	NA	intron (NM_153002, intron 2 of 8)	L1MA9|LINE|L1	36829	NM_001168271	165829	Hs.333358	NM_153002	ENSG00000175697	GPR156	GABABL|PGR28	G protein-coupled receptor 156	protein-coding	1.766	nan	1.188	0.130	0.355	0.251	0.403	0.378	0.129	0.205	0.205	0.152	0.336	0.029	0.107	0.671	1.203	0.337	0.283	0.519	nan	3.127	0.773	0.401	0.382	nan	2.043	0.385	0.427	5.756	5.827	0.296	0.365	0.181	0.168	2.835	5.947	0.774	0.734	0.040	0.094	0.041	1.040	0.403	0.152	0.179	0.161	0.104	2.979
2003	chr12	67133457	67148866	+	0	NA	Intergenic	Intergenic	-68236	NM_021150	23426	Hs.505946	NM_021150	ENSG00000155974	GRIP1	GRIP	glutamate receptor interacting protein 1	protein-coding	0.684	1.157	0.630	0.280	0.623	0.313	0.468	0.092	0.063	0.656	0.426	0.333	0.891	0.050	0.092	0.303	0.171	0.215	0.364	0.833	nan	2.036	0.770	0.239	0.237	1.023	1.405	0.394	0.367	0.331	0.158	0.093	0.252	0.554	0.591	0.285	0.475	3.230	1.592	0.199	0.160	0.120	0.062	0.468	0.333	0.025	0.080	0.045	0.052
3666	chr18	11848976	11858397	+	0	NA	3' UTR (NM_020412, exon 1 of 1)	3' UTR (NM_020412, exon 1 of 1)	2297	NM_020412	57132	Hs.656244	NM_020412	ENSG00000255112	CHMP1B	C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2	charged multivesicular body protein 1B	protein-coding	3.802	2.670	1.669	1.891	1.079	0.494	0.746	2.345	0.293	0.567	0.421	1.827	2.898	0.895	0.078	2.169	2.089	2.938	4.746	4.330	4.734	6.363	3.063	3.778	3.882	0.804	1.102	3.504	5.071	3.019	2.559	0.730	1.434	2.732	4.832	1.790	2.369	3.725	2.482	0.705	0.905	0.162	0.329	0.746	1.827	1.260	2.322	0.249	0.869
7661	chr8	42574223	42601728	+	0	NA	intron (NM_000749, intron 5 of 5)	intron (NM_000749, intron 5 of 5)	35413	NM_000749	1142	Hs.654576	NM_000749	ENSG00000147432	CHRNB3	-	cholinergic receptor nicotinic beta 3 subunit	protein-coding	0.703	nan	0.669	0.130	0.324	0.140	0.343	0.098	0.147	0.125	0.122	0.800	0.385	0.067	0.117	0.403	0.405	0.384	0.855	1.379	1.534	1.453	0.498	0.287	0.315	0.178	0.265	0.271	0.287	1.315	1.128	0.163	0.211	0.145	0.141	0.718	2.106	0.798	0.725	0.061	2.781	0.052	0.058	0.343	0.800	0.081	0.100	0.050	0.530
1801	chr12	6998911	7001697	+	0	NA	Intergenic	(CCCCG)n|Simple_repeat|Simple_repeat	-1782	NR_135083	105369632	Hs.670096	NR_135083	ENSG00000111671	LOC105369632	-	uncharacterized LOC105369632	ncRNA	3.470	nan	nan	8.034	4.155	1.960	2.634	1.922	0.172	1.708	0.865	4.208	7.712	3.861	0.202	1.968	2.407	5.468	8.984	nan	5.983	14.835	6.705	8.856	10.157	6.585	6.719	7.038	8.886	2.877	1.799	2.600	3.480	4.573	6.528	5.411	7.209	2.535	1.350	4.494	4.617	0.683	4.889	2.634	4.208	6.604	2.401	2.187	1.913
3074	chr16	19140431	19158078	+	0	NA	Intergenic	MER30|DNA|hAT-Charlie	24000	NR_028028	162073	Hs.530899	NM_001034841	ENSG00000205730	ITPRIPL2	-	inositol 1,4,5-trisphosphate receptor interacting protein like 2	protein-coding	1.736	1.368	nan	1.024	0.648	0.409	3.182	1.067	0.358	0.239	0.172	0.911	3.296	0.050	0.106	0.225	0.096	0.117	0.357	0.538	0.639	1.933	0.538	0.119	0.128	0.167	0.284	7.628	7.430	nan	0.854	0.135	0.187	1.595	2.311	0.723	3.005	0.634	0.640	0.217	0.096	0.512	0.173	3.182	0.911	0.148	0.259	0.017	0.490
1178	chr10	92961371	92982388	+	0	NA	intron (NM_001257101, intron 1 of 9)	MIR|SINE|MIR	-8029	NM_001256549	84333	Hs.500512	NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding	0.704	1.569	0.988	2.473	3.946	2.041	0.079	0.306	0.139	1.193	0.617	4.379	3.063	0.140	0.094	0.436	0.612	0.749	1.025	4.007	3.918	4.454	1.616	0.814	0.792	0.549	0.822	nan	6.622	0.316	0.246	0.308	0.632	1.024	0.790	0.535	0.938	2.201	1.164	2.087	2.540	0.205	0.121	0.079	4.379	0.116	0.397	0.292	0.212
3163	chr16	69980858	69988738	+	0	NA	promoter-TSS (NM_001271197)	promoter-TSS (NM_001271197)	-7	NM_182619	348174	Hs.592064	NM_182619	ENSG00000157322	CLEC18A	MRCL|MRCL1|MRLP2	C-type lectin domain family 18 member A	protein-coding	nan	nan	0.451	0.182	0.287	0.150	0.286	0.039	0.104	0.060	0.106	0.045	0.260	0.110	0.010	0.325	0.360	0.145	0.252	0.287	0.303	0.383	0.138	0.454	0.521	0.108	nan	0.235	0.457	0.480	0.353	0.111	0.294	0.032	0.042	0.248	0.411	0.573	0.581	0.212	0.064	0.036	9.290	0.286	0.045	0.244	0.078	0.037	0.032
6459	chr5	137666374	137675773	+	0	NA	intron (NM_001318098, intron 1 of 13)	intron (NM_001318098, intron 1 of 13)	-2151	NM_001135647	51307	Hs.54056	NM_016605	ENSG00000120709	FAM53C	C5orf6	family with sequence similarity 53 member C	protein-coding	3.446	2.140	nan	1.652	3.274	1.920	1.402	1.801	0.154	1.133	0.550	3.411	6.243	2.608	0.123	2.242	2.818	3.718	5.195	4.047	4.894	4.235	3.402	8.632	9.227	2.743	3.472	4.079	5.333	4.588	4.228	3.483	4.765	4.448	5.718	3.338	4.506	1.362	0.762	0.756	2.120	0.816	1.090	1.402	3.411	0.871	1.514	1.293	1.319
6862	chr6	83276384	83291815	+	0	NA	Intergenic	Intergenic	210138	NM_001166392	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding	0.824	0.878	nan	1.483	0.808	0.364	0.259	0.185	0.083	0.597	0.250	1.505	4.090	0.049	0.133	0.462	0.288	0.442	0.527	1.653	1.676	5.848	1.666	0.298	0.321	0.106	0.167	2.765	2.340	0.396	0.162	0.311	0.594	2.223	1.586	0.121	0.221	1.458	0.758	0.623	0.289	0.609	0.036	0.259	1.505	0.006	1.318	0.141	0.048
458	chr1	114694378	114700661	+	0	NA	Intergenic	Intergenic	-1047	NM_001270805	148281	Hs.370963	NM_205848	ENSG00000134207	SYT6	sytVI	synaptotagmin 6	protein-coding	nan	0.673	0.854	0.071	0.290	0.114	0.834	0.083	0.077	0.050	0.130	0.038	1.593	0.211	0.139	3.854	2.563	0.109	0.085	1.212	nan	0.660	0.233	0.440	0.421	0.599	1.113	0.574	0.865	1.031	1.690	6.021	8.556	0.046	0.040	1.930	2.139	0.528	0.462	0.089	0.149		0.089	0.834	0.038	0.592	0.016	3.651	1.045
7004	chr6	139306875	139312235	+	0	NA	promoter-TSS (NM_001128617)	promoter-TSS (NM_001128617)	-157	NM_031922	85021	Hs.334603	NM_031922	ENSG00000135597	REPS1	RALBP1	RALBP1 associated Eps domain containing 1	protein-coding	5.040	3.270	4.539	4.463	3.743	1.980	4.000	1.258	0.060	1.816	0.849	3.721	7.539	3.152	0.137	2.681	3.255	4.366	7.832	6.540	5.334	14.104	5.487	6.268	6.683	2.620	3.014	3.864	6.219	5.968	7.237	2.192	4.860	6.840	6.555	2.795	nan	2.261	0.903	1.844	1.932	1.939	1.573	4.000	3.721	0.724	2.596	0.832	0.762
4361	chr2	54341445	54343794	+	0	NA	5' UTR (NM_138448, exon 1 of 4)	5' UTR (NM_138448, exon 1 of 4)	209	NM_001320590	98	Hs.516173	NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding	7.068	nan	4.701	6.659	7.009	4.339	5.339	5.051	0.337	3.547	1.592	5.790	11.043	5.396	0.306	7.811	6.542	4.558	6.400	12.204	12.318	9.958	7.189	25.980	27.984	6.097	6.863	11.986	15.820	12.501	10.827	5.541	7.586	4.105	5.019	12.137	9.292	3.910	1.330	4.357	4.695	0.813	3.238	5.339	5.790	2.662	7.490	2.776	3.185
5499	chr3	118729404	118754965	+	0	NA	intron (NM_152538, intron 3 of 8)	intron (NM_152538, intron 3 of 8)	11492	NM_001015887	152404	Hs.112873	NM_152538	ENSG00000144847	IGSF11	BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3	immunoglobulin superfamily member 11	protein-coding	1.141	nan	1.062	0.348	0.234	0.094	0.320	0.104	0.132	0.208	0.197	0.079	0.252	0.183	0.073	0.583	0.583	0.233	0.312	1.106	nan	0.446	0.154	0.367	0.322	nan	7.552	0.436	0.575	6.443	5.785	0.155	0.247	0.412	0.324	2.311	4.899	0.574	0.590	0.020	0.290	0.034	0.869	0.320	0.079	0.545	0.056	0.041	0.675
5521	chr3	126564523	126595311	+	0	NA	intron (NM_001320610, intron 5 of 7)	MIRb|SINE|MIR	-127520	NM_032242	5361	Hs.432329	NM_032242	ENSG00000114554	PLXNA1	NOV|NOVP|PLEXIN-A1|PLXN1	plexin A1	protein-coding	0.956	nan	1.140	0.523	0.370	0.234	0.295	0.195	0.099	0.565	0.310	0.132	0.644	0.074	0.088	0.321	0.260	0.204	0.402	0.566	0.592	2.991	0.625	0.333	0.321	0.427	nan	0.286	0.499	0.895	0.786	0.325	0.283	0.514	0.383	0.386	0.611	2.466	1.046	0.934	0.156	0.123	0.091	0.295	0.132	0.122	0.254	0.039	0.177
2507	chr14	29155589	29161560	+	0	NA	Intergenic	Intergenic	75951	NR_125758	103695363	Hs.569360	NR_125758		FOXG1-AS1	FOXG1-AS	FOXG1 antisense RNA 1 (head to head)	ncRNA	0.965	1.011	0.996	1.622	0.200	0.134	0.173	0.207	0.080	0.433	0.358	0.081	0.343	0.071	0.134	0.244	0.090	0.170	0.184	0.339	0.426	9.948	7.790	0.292	0.197	0.293	0.576	0.260	0.359	0.536	0.204	0.112	0.188	3.917	4.645	0.190	0.286	1.758	0.866	0.591	1.771	1.111	0.071	0.173	0.081	0.034	0.119	0.034	0.020
7862	chr8	106662888	106681684	+	0	NA	intron (NM_012082, intron 5 of 7)	intron (NM_012082, intron 5 of 7)	341139	NM_012082	23414	Hs.431009	NM_012082	ENSG00000169946	ZFPM2	DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding	0.924	nan	nan	0.149	0.232	0.103	0.075	0.154	0.099	0.033	0.070	0.038	0.466	0.109	0.074	0.332	0.398	0.446	0.350	0.345	0.438	nan	0.080	0.456	0.432	3.121	nan	0.519	nan	nan	0.306	0.211	0.303	0.068	0.072	0.352	nan	0.498	0.429	0.021	0.056	0.024	0.021	0.075	0.038	0.026	0.011	0.042	0.138
1630	chr11	111225998	111240794	+	0	NA	intron (NM_006235, intron 1 of 4)	intron (NM_006235, intron 1 of 4)	14914	NR_039712	100616330		NR_039712	ENSG00000264032	MIR4491	mir-4491	microRNA 4491	ncRNA	0.674	0.902	0.845	0.188	1.347	0.658	0.165	0.076	0.055	0.128	0.222	0.991	0.731	0.052	0.103	3.413	nan	1.052	1.284	0.636	0.788	1.265	0.271	0.375	0.349	1.044	nan	0.668	0.469	0.434	0.305	1.277	2.125	0.778	1.098	0.251	0.405	0.817	0.651	0.456	0.111	0.168	0.097	0.165	0.991	0.597	0.103	1.375	0.093
3109	chr16	30401130	30421103	+	0	NA	3' UTR (NM_001214906, exon 3 of 3)	3' UTR (NM_001214906, exon 3 of 3)	4376	NM_152652	197407	Hs.513501	NM_152652	ENSG00000180035	ZNF48	ZNF553	zinc finger protein 48	protein-coding	2.937	1.485	1.773	3.118	2.375	1.185	2.900	0.470	0.265	0.431	0.285	2.608	5.713	2.056	0.112	1.818	2.128	2.045	2.696	3.195	3.124	6.407	1.905	2.217	2.185	1.177	1.950	5.435	7.691	2.660	2.849	0.911	1.732	2.905	2.616	1.981	2.137	1.906	0.920	1.971	0.647	0.640	0.804	2.900	2.608	0.857	1.589	0.425	0.471
3185	chr16	77780363	77824771	+	0	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	-19894	NM_020927	57687	Hs.461405	NM_020927	ENSG00000171724	VAT1L	-	vesicle amine transport 1 like	protein-coding	1.035	0.702	nan	0.180	0.263	0.151	0.591	0.037	0.062	0.046	0.063	0.154	0.468	0.027	0.076	0.240	0.238	0.112	0.145	0.247	0.295	0.232	0.094	0.127	0.124	0.070	0.156	0.298	0.292	1.378	1.051	0.127	0.149	0.035	0.027	1.179	4.438	0.516	0.507	0.027	0.275	0.006	0.042	0.591	0.154	0.035	0.034	0.024	1.106
4340	chr2	50939335	50963110	+	0	NA	intron (NM_001135659, intron 5 of 23)	intron (NM_001135659, intron 5 of 23)	-27822	NR_130470	103504737		NR_130470	ENSG00000216191	MIR8485	hsa-mir-8485	microRNA 8485	ncRNA	1.175	nan	0.815	0.184	1.393	0.776	0.372	0.116	0.072	0.388	0.355	0.951	0.480	0.036	0.129	0.357	0.359	0.256	0.247	0.725	0.915	1.271	0.370	0.393	0.380	3.659	4.522	0.774	0.909	1.259	1.028	0.157	0.280	0.890	0.788	0.546	1.049	0.380	0.395	0.119	0.972	0.215	0.098	0.372	0.951	0.672	0.190	0.047	0.193
5060	chr21	11094051	11114867	+	0	NA	Intergenic	L1PA15-16|LINE|L1	-5522	NM_001187	574	Hs.545789	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding	1.476	0.939	nan	1.714	0.787	0.454	0.590	0.508	0.292	0.393	0.363	0.753	0.873	0.125	0.247	0.699	0.447	0.490	0.662	0.508	0.649	2.743	1.146	0.314	0.362	1.595	2.394	5.189	5.540	1.102	0.390	0.317	0.358	0.164	0.221	0.940	1.111	3.531	2.159	0.073	0.722	0.078	0.167	0.590	0.753	0.037	0.165	0.052	0.344
3936	chr19	2234214	2238866	+	0	NA	promoter-TSS (NM_001300836)	promoter-TSS (NM_001300836)	-188	NM_018049	55111	Hs.501353	NM_018049	ENSG00000104886	PLEKHJ1	GNRPX	pleckstrin homology domain containing J1	protein-coding	5.963	4.706	6.099	9.826	9.300	4.330	6.815	2.486	0.588	3.408	1.683	8.705	16.848	4.408	0.123	7.423	6.601	8.251	10.136	10.748	9.210	7.187	2.908	14.947	15.188	5.871	8.022	6.836	10.681	8.707	9.314	3.839	6.073	8.598	11.496	4.759	4.964	4.807	2.833	7.128	10.305	2.312	2.557	6.815	8.705	2.289	4.175	1.594	1.465
350	chr1	66720137	66745291	+	0	NA	intron (NM_001037340, intron 5 of 14)	intron (NM_001037340, intron 5 of 14)	-65077	NM_001037339	5142	Hs.198072	NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding	1.268	0.765	nan	0.230	1.380	0.855	0.244	0.600	0.187	0.180	0.138	0.171	0.464	0.112	0.104	0.907	1.149	4.263	5.559	0.499	0.543	0.152	0.070	0.348	0.321	nan	nan	0.975	nan	0.182	0.130	0.560	1.201	0.041	0.058	0.404	0.918	1.043	0.757	0.036	0.124	0.023	0.140	0.244	0.171	0.046	1.243	0.835	0.189
6541	chr5	168450458	168455571	+	0	NA	intron (NR_109897, intron 1 of 4)	intron (NR_109897, intron 1 of 4)	12782	NR_109897	728095	Hs.145601	NR_109897		LOC728095	-	uncharacterized LOC728095	ncRNA	nan	0.603	0.720	0.086	0.080	0.064	0.139	0.200	0.031	0.063	0.078		0.238	0.021	0.100	0.747	0.367	8.158	1.469	0.212	0.321	0.047	0.037	0.099	0.080	0.101	0.273	0.359	0.292	0.580	0.163	0.929	0.855	0.105	0.050	1.186	2.943	0.058	0.196	0.044	0.040	0.037	0.260	0.139		0.019	0.039	0.563	0.696
1810	chr12	7789664	7800131	+	0	NA	Intergenic	HUERS-P3-int|LTR|ERV1	23602	NM_005889	339	Hs.560	NM_001644	ENSG00000111701	APOBEC1	APOBEC-1|BEDP|CDAR1|HEPR	apolipoprotein B mRNA editing enzyme catalytic subunit 1	protein-coding	0.571	nan	nan	0.143	0.247	0.107	0.135	0.051	0.015	0.088	0.162	0.103	0.574	0.125	0.115	1.425	0.949	3.217	2.657	nan	0.524	0.468	0.250	10.839	11.656	0.162	0.233	0.152	0.142	0.870	0.816	1.204	1.467	0.138	0.135	0.184	nan	0.206	0.271	0.016	0.045		0.030	0.135	0.103	0.165	0.039	0.409	0.023
6233	chr5	36148267	36159949	+	0	NA	intron (NM_001243120, intron 2 of 7)	L2a|LINE|L2	1963	NM_005983	6502	Hs.23348	NM_005983	ENSG00000145604	SKP2	FBL1|FBXL1|FLB1|p45	S-phase kinase associated protein 2	protein-coding	2.075	2.693	8.289	3.609	1.286	0.766	1.093	2.064	0.289	1.990	0.904	2.717	3.797	0.813	0.115	2.333	2.731	2.383	3.932	4.187	3.770	2.837	1.039	2.126	2.135	4.526	5.582	2.711	3.537	6.113	5.661	1.964	4.604	2.508	2.336	1.990	4.767	2.353	1.265	1.350	1.420	0.455	0.805	1.093	2.717	0.698	1.461	1.356	1.350
2754	chr14	96667668	96693622	+	0	NA	intron (NM_000623, intron 1 of 2)	intron (NM_000623, intron 1 of 2)	9510	NM_000623	624	Hs.654542	NM_000623	ENSG00000168398	BDKRB2	B2R|BK-2|BK2|BKR2|BRB2	bradykinin receptor B2	protein-coding	1.934	0.952	nan	0.550	0.445	0.242	0.389	0.801	0.150	0.298	0.102	0.349	1.445	0.063	0.080	0.247	0.254	0.167	0.358	1.087	0.926	0.926	0.318	0.769	0.773	0.407	0.709	1.141	1.322	3.631	4.583	0.338	0.408	0.976	1.181	0.131	0.279	nan	0.664	0.178	0.354	0.158	0.100	0.389	0.349	0.223	1.005	0.108	0.038
1546	chr11	79560686	79584754	+	0	NA	Intergenic	Intergenic	-421025	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4	teneurin transmembrane protein 4	protein-coding	nan	1.155	0.471	0.090	0.226	0.093	0.134	0.022	0.034	0.143	0.136	0.889	0.414	0.049	0.116	0.547	0.381	0.186	0.354	0.446	0.499	0.115	0.078	9.890	9.749	0.166	0.374	0.427	0.468	0.305	0.178	0.861	1.409	0.289	0.208	0.090	0.173	0.423	0.499	0.030	1.026	0.064	0.092	0.134	0.889	0.040	0.060	1.025	0.056
7627	chr8	28504050	28539543	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	37185	NR_126027	101929402	Hs.667366	NR_126027	ENSG00000246339	EXTL3-AS1	C8orf50	EXTL3 antisense RNA 1	ncRNA	nan	1.454	nan	1.504	3.230	1.704	0.418	0.277	0.128	1.267	0.544	4.045	0.650	0.068	0.110	0.577	0.679	0.423	0.547	nan	1.886	nan	2.584	0.119	0.120	0.293	0.458	1.788	1.975	1.097	0.698	0.186	0.247	2.419	3.101	0.861	2.080	nan	nan	0.433	0.179	0.543	0.080	0.418	4.045	0.063	1.599	0.033	0.591
311	chr1	54082862	54098564	+	0	NA	intron (NM_147193, intron 1 of 9)	intron (NM_147193, intron 1 of 9)	109164	NM_147193	148979	Hs.306691	NM_147193	ENSG00000174332	GLIS1	-	GLIS family zinc finger 1	protein-coding	1.324	0.616	0.883	0.100	0.331	0.265	0.171	0.248	0.113	0.091	0.102	0.094	0.490	0.055	0.081	0.373	0.444	0.309	0.401	0.554	0.648	0.370	0.229	0.357	0.330	3.285	3.310	0.303	0.508	1.545	1.627	0.267	0.348	0.088	0.103	0.369	nan	0.515	0.484	0.068	0.125	0.016	0.110	0.171	0.094	0.507	0.045	0.032	0.172
3256	chr17	7106915	7125779	+	0	NA	intron (NR_135527, intron 3 of 20)	AluSg4|SINE|Alu	-4097	NM_001270447	37	Hs.437178	NM_000018	ENSG00000072778	ACADVL	ACAD6|LCACD|VLCAD	acyl-CoA dehydrogenase, very long chain	protein-coding	2.369	1.560	1.494	0.731	2.246	1.327	2.543	0.431	0.060	0.403	0.218	1.669	2.779	7.248	0.327	2.208	3.025	0.763	1.348	4.765	4.458	2.542	1.594	0.852	0.855	1.252	1.878	2.336	3.946	2.043	1.765	0.695	1.033	0.791	0.675	4.274	10.533	0.981	0.617	1.619	0.929	0.188	0.446	2.543	1.669	1.130	1.581	0.445	4.862
4537	chr2	145106922	145144362	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-35541	NM_001284234	79712	Hs.44780	NM_024659	ENSG00000121964	GTDC1	Hmat-Xa|mat-Xa	glycosyltransferase like domain containing 1	protein-coding	1.145	nan	1.563	0.099	0.301	0.136	0.194	0.344	0.069	0.130	0.120	0.153	0.312	0.073	0.095	0.310	0.276	2.397	2.670	0.279	0.327	0.135	0.077	0.243	0.277	0.981	1.435	0.326	0.345	0.622	0.354	0.144	0.327	0.042	0.046	0.419	0.621	0.337	0.372	0.043	0.038	0.013	0.049	0.194	0.153	0.135	0.034	0.087	0.145
825	chr1	206680184	206701374	+	0	NA	intron (NM_182664, intron 1 of 4)	AluJr|SINE|Alu	9916	NM_182663	83593	Hs.497579	NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding	1.134	1.028	4.116	0.177	0.530	0.235	1.668	0.356	0.108	0.342	0.263	1.629	1.548	0.108	0.113	0.476	0.517	0.428	0.651	1.703	1.827	1.122	0.475	nan	nan	1.133	1.545	1.758	1.909	0.515	0.340	0.232	0.288	0.148	0.165	0.629	1.105	0.966	0.675	0.637	2.254	0.040	0.094	1.668	1.629	0.272	0.162	0.065	0.263
917	chr1	232054824	232078591	+	0	NA	intron (NR_126441, intron 1 of 3)	intron (NR_126441, intron 1 of 3)	5127	NR_126441	104472714		NR_126441	ENSG00000226758	DISC1-IT1	-	DISC1 intronic transcript 1	ncRNA	1.426	1.149	2.514	1.983	0.892	0.382	0.716	0.272	0.197	0.738	0.259	1.143	1.318	0.036	0.100	0.377	0.512	0.780	2.716	0.890	0.883	nan	3.890	0.259	0.222	0.705	1.091	nan	2.537	0.619	0.374	0.152	0.200	0.642	0.538	0.548	1.154	nan	0.918	1.363	0.162	0.040	1.497	0.716	1.143	0.294	2.630	0.083	0.159
3431	chr17	44655266	44672106	+	0	NA	Intergenic	Intergenic	-4349	NM_006178	4905	Hs.431279	NM_006178	ENSG00000073969	NSF	SKD2	N-ethylmaleimide sensitive factor, vesicle fusing ATPase	protein-coding	3.237	2.748	nan	1.508	4.169	2.160	1.033	0.470	0.244	1.620	0.896	3.123	3.815	0.949	0.112	1.742	1.549	2.691	3.256	1.542	nan	2.880	0.842	12.892	12.931	1.807	2.483	2.328	nan	3.666	3.404	1.653	2.650	4.035	5.489	3.330	4.401	3.162	1.663	0.863	2.986	1.279	0.764	1.033	3.123	0.502	2.185	1.057	1.189
6003	chr4	117364516	117408451	+	0	NA	Intergenic	AluSx|SINE|Alu	165602	NR_031737	100302290		NR_031737	ENSG00000270394	MIR1973	hsa-mir-1973|mir-1973	microRNA 1973	ncRNA	0.507	0.640	0.480	0.170	0.174	0.110	0.073	0.076	0.066	0.057	0.096	0.040	0.173	0.037	0.086	0.189	0.148	0.169	0.229	0.139	0.138	0.114	0.066	0.117	0.117	7.184	8.638	0.206	0.219	0.375	0.181	0.130	0.209	0.067	0.055	0.331	0.737	0.194	0.212	0.012	0.038	0.015	0.049	0.073	0.040	0.007	0.041	0.027	0.126
495	chr1	145381066	145400181	+	0	NA	intron (NM_001039703, intron 68 of 85)	AluSx4|SINE|Alu	-8219	NR_125968	101928979	Hs.735893	NR_125967	ENSG00000233396	LINC01719	-	long intergenic non-protein coding RNA 1719	ncRNA	2.882	nan	2.997	1.334	1.333	0.547	1.099	1.738	0.429	1.473	0.877	1.237	10.956	2.432	0.234	2.110	3.149	1.743	2.730	2.157	1.844	4.053	1.413	3.715	3.753	1.919	2.423	2.549	3.625	2.231	2.203	4.399	4.796	2.631	2.383	2.923	4.754	1.569	0.756	1.267	3.448	0.334	0.725	1.099	1.237	0.418	1.481	2.000	1.169
4977	chr20	46649046	46708673	+	0	NA	Intergenic	AluJb|SINE|Alu	-59998	NR_110027	101927457	Hs.445823	NR_110027		LINC01522	-	long intergenic non-protein coding RNA 1522	ncRNA	nan	nan	0.563	0.080	0.314	0.191	1.011	0.346	0.118	0.094	0.114	2.105	7.786	0.049	0.114	0.472	0.300	0.248	0.472	2.862	3.468	nan	0.087	0.147	0.135	0.598	0.903	0.144	0.166	nan	0.568	0.204	0.250	0.075	0.091	0.323	0.536	0.089	0.169	0.588	0.411	0.018	0.166	1.011	2.105	0.353	0.017	0.057	0.144
4501	chr2	133327664	133349206	+	0	NA	intron (NM_001508, intron 1 of 1)	AluSg|SINE|Alu	89508	NM_144586	116372	Hs.432395	NM_144586	ENSG00000150551	LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding	nan	0.805	nan	0.900	0.997	0.558	0.226	0.055	0.097	0.109	0.091	0.862	2.501	0.020	0.066	0.347	0.282	0.196	0.297	2.672	2.744	0.137	0.084	0.172	0.181	0.176	0.206	4.054	nan	0.462	0.379	0.179	0.209	0.031	0.035	0.323	0.543	1.499	0.814	3.795	0.786	0.013	0.007	0.226	0.862	0.004	0.399	0.051	0.118
3302	chr17	17254563	17268722	+	0	NA	Intergenic	Intergenic	54962	NM_020201	56953	Hs.513977	NM_020201	ENSG00000205309	NT5M	dNT-2|dNT2|mdN	5',3'-nucleotidase, mitochondrial	protein-coding	1.418	0.804	1.070	0.699	0.859	0.425	0.369	0.074	0.057	0.378	0.204	1.150	0.553	0.056	0.084	0.512	0.686	0.328	nan	1.376	1.312	1.317	0.473	0.257	0.314	0.535	0.971	3.093	2.978	nan	1.866	0.297	0.308	0.264	0.264	0.935	2.234	0.835	0.513	1.106	0.625	0.020	0.045	0.369	1.150	0.276	2.981	0.048	0.738
8048	chr9	12808682	12819978	+	0	NA	promoter-TSS (NR_125775)	promoter-TSS (NR_125775)	58	NR_125775	101929467	Hs.586443	NR_125775	ENSG00000235448	LURAP1L-AS1	-	LURAP1L antisense RNA 1	ncRNA	nan	nan	1.188	2.052	2.370	1.532	1.379	2.872	0.071	1.429	0.553	0.848	2.915	0.618	0.074	0.325	0.244	1.545	5.212	0.364	0.554	6.370	3.664	1.997	2.124	6.375	6.582	3.367	4.154	4.104	3.151	0.675	0.602	6.226	10.785	0.345	0.819	2.998	2.194	0.044	0.368	1.666	0.246	1.379	0.848	0.233	0.863	0.491	0.100
1816	chr12	8833863	8852124	+	0	NA	intron (NR_123740, intron 1 of 8)	intron (NR_123740, intron 1 of 8)	-7503	NM_001297776	57494	Hs.504670	NM_020734	ENSG00000166532	RIMKLB	FAM80B|NAAGS|NAAGS-I	ribosomal modification protein rimK like family member B	protein-coding	1.645	nan	nan	1.142	1.376	0.657	0.836	0.043	0.027	0.637	0.329	1.384	4.281	1.401	0.132	0.829	1.174	1.407	1.757	nan	2.133	1.878	0.705	2.033	2.090	1.361	1.716	2.001	3.199	0.866	0.768	1.370	2.041	0.282	0.199	0.948	nan	0.685	0.509	1.536	1.764	0.088	0.031	0.836	1.384	0.101	0.039	1.916	0.459
2460	chr13	113339751	113349249	+	0	NA	promoter-TSS (NM_015205)	promoter-TSS (NM_015205)	-143	NM_032189	23250	Hs.29189	NM_015205	ENSG00000068650	ATP11A	ATPIH|ATPIS	ATPase phospholipid transporting 11A	protein-coding	1.474	nan	1.947	2.179	1.221	0.644	2.734	0.071	0.085	1.720	0.795	2.704	3.864	1.173	0.077	4.507	6.927	1.743	2.831	3.156	2.715	4.006	1.479	1.187	1.189	0.184	0.276	2.618	3.268	0.841	1.146	1.711	3.483	3.034	2.175	0.130	0.189	0.985	0.478	2.290	1.700	0.362	1.775	2.734	2.704	0.123	1.025	0.614	0.091
5174	chr22	16191714	16193850	+	0	NA	intron (NR_122113, intron 1 of 7)	CpG	227	NR_122113	503637	Hs.744284	NR_122113	ENSG00000206195	DUXAP8	-	double homeobox A pseudogene 8	pseudo	2.536	nan	3.424	0.611	4.549	2.714	2.153	6.307	0.306	2.540	1.221	0.842	5.117	5.026	0.258	5.307	7.662	5.806	9.793	0.497	0.495	7.152	2.013	5.856	6.143	8.822	9.791	9.308	11.516	4.708	6.557	5.140	9.381	3.533	2.364	2.946	4.392	6.907	3.660	0.884	0.962	1.117	0.038	2.153	0.842	9.888	5.651	4.648	2.852
4293	chr2	38618376	38637670	+	0	NA	Intergenic	L1ME3A|LINE|L1	-22297	NM_001330462	64225	Hs.594950	NM_022374	ENSG00000119787	ATL2	ARL3IP2|ARL6IP2|aip-2|atlastin2	atlastin GTPase 2	protein-coding	0.799	nan	nan	0.131	0.276	0.075	0.283	0.140	0.177	0.111	0.158	0.129	1.245	0.091	0.115	1.515	1.478	3.571	8.134	0.311	0.338	0.222	0.099	2.484	nan	0.200	0.400	0.283	0.258	nan	0.248	1.283	1.293	0.044	0.034	0.227	0.520	0.354	0.409	0.055	0.174	0.034	0.079	0.283	0.129	0.070	0.031	0.458	0.117
5067	chr21	19094665	19105406	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	64791	NR_038870	246312	Hs.473425	NR_038870	ENSG00000240770	C21orf91-OT1	D21S2089E|NCRNA00285	C21orf91 overlapping transcript 1	ncRNA	0.756	1.028	nan	0.350	0.460	0.183	0.217	0.007	0.060	0.102	0.092	0.279	7.387	0.020	0.086	0.293	0.200	0.189	0.274	1.509	1.268	0.102	0.039	0.204	0.219	0.328	0.429	0.100	0.180	0.544	0.164	0.031	0.107	0.597	0.537	0.364	0.988	1.070	0.743	5.519	2.195	0.131	0.022	0.217	0.279	0.018		0.036	0.263
2976	chr15	86980399	86993987	+	0	NA	intron (NM_152336, intron 18 of 24)	L1MA5|LINE|L1	-126994	NR_046012	727915	Hs.451281	NR_046012	ENSG00000260125	AGBL1-AS1	-	AGBL1 antisense RNA 1	ncRNA	0.753	nan	1.066	0.071	0.132	0.035	0.245	0.117	0.106	0.058	0.121	0.015	0.238	0.040	0.070	0.318	0.170	0.175	0.169	0.230	0.229	0.113	0.058	0.065	0.077	0.221	0.378	0.191	0.262	5.461	7.154	0.140	0.280	0.040	0.034	0.368	0.938	0.097	0.196	0.021	0.054	0.007	0.065	0.245	0.015	0.680	0.023	0.030	0.140
3574	chr17	75687506	75697979	+	0	NA	Intergenic	Intergenic	31899	NR_104134	100132174	Hs.640110	NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA	1.049	0.676	0.854	0.041	0.945	0.370	2.075	0.042	0.168	0.090	0.132	1.897	3.465	0.052	0.082	4.007	5.890	0.184	0.296	0.710	0.805	0.558	0.228	0.378	0.474	nan	0.474	1.278	2.136	1.233	0.927	0.943	1.324	0.142	0.183	0.645	1.765	nan	0.412	0.764	2.073	0.009	0.105	2.075	1.897	0.193	0.086	0.547	0.223
3824	chr18	53487220	53536209	+	0	NA	Intergenic	Intergenic	75716	NR_110755	101927273	Hs.434335	NR_110755	ENSG00000260930	LINC01416	-	long intergenic non-protein coding RNA 1416	ncRNA	nan	0.740	0.769	0.103	0.256	0.152	0.313	0.193	0.069	0.067	0.074	0.188	0.277	2.439	0.115	0.376	0.253	0.403	0.544	0.468	0.558	0.395	0.207	0.531	0.509	0.464	0.682	0.314	0.354	0.530	0.359	0.150	0.246	0.151	0.188	0.179	0.276	nan	1.114	0.034	0.057	0.031	0.067	0.313	0.188	0.032	0.045	0.034	0.076
3238	chr17	1943346	1946357	+	0	NA	promoter-TSS (NM_080822)	promoter-TSS (NM_080822)	-426	NM_080822	124641	Hs.513856	NM_080822	ENSG00000262664	OVCA2	-	ovarian tumor suppressor candidate 2	protein-coding	6.637	2.495	3.590	1.690	3.534	2.399	3.293	1.263	0.004	0.782	0.413	3.504	6.774	5.956	0.181	4.612	7.774	4.815	6.352	6.901	6.925	6.017	3.098	4.099	4.087	3.436	5.344	4.615	7.047	10.256	12.777	1.268	2.511	2.722	2.461	14.269	17.508	2.275	1.190	3.233	2.169	0.662	1.150	3.293	3.504	1.970	5.601	0.483	10.432
3421	chr17	43053157	43101863	+	0	NA	Intergenic	AluSq|SINE|Alu	-31866	NM_006688	10882	Hs.134012	NM_006688	ENSG00000131094	C1QL1	C1QRF|C1QTNF14|CRF	complement C1q like 1	protein-coding	1.731	1.217	nan	0.376	0.708	0.403	0.370	0.196	0.122	0.481	0.291	0.202	0.630	0.151	0.126	0.485	0.596	0.490	0.819	0.680	nan	2.256	0.586	0.782	0.855	0.747	1.162	4.002	nan	1.778	1.609	0.443	0.524	0.816	0.900	1.138	2.841	1.514	0.892	0.196	0.242	0.203	0.074	0.370	0.202	0.818	1.398	0.101	0.734
5531	chr3	127818792	127834361	+	0	NA	intron (NM_003707, intron 3 of 10)	intron (NM_003707, intron 3 of 10)	16095	NM_003707	8607	Hs.272822	NM_003707	ENSG00000175792	RUVBL1	ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A	RuvB like AAA ATPase 1	protein-coding	1.035	nan	0.725	0.202	0.439	0.257	0.464	0.484	0.279	0.521	0.286	0.131	0.260	0.077	0.105	0.350	0.440	0.364	0.481	0.577	0.563	1.372	0.376	0.454	0.444	0.463	nan	0.352	0.330	0.770	0.538	0.439	0.623	0.675	0.699	0.330	0.582	2.780	1.279	0.038	0.257	0.111	0.222	0.464	0.131	0.013	0.118	0.120	0.048
2274	chr13	37571745	37577027	+	0	NA	promoter-TSS (NM_001142364)	promoter-TSS (NM_001142364)	-292	NM_181503	11340	Hs.294041	NM_181503	ENSG00000120699	EXOSC8	CIP3|EAP2|OIP2|PCH1C|RRP43|Rrp43p|bA421P11.3|p9	exosome component 8	protein-coding	6.593	5.052	6.135	5.424	4.253	2.275	3.308	3.312	0.700	2.019	1.637	8.589	10.351	4.666	0.188	14.203	13.937	5.664	6.957	16.107	14.289	11.508	6.306	11.673	12.900	6.443	8.218	8.308	13.616	10.725	13.109	7.493	13.292	7.115	7.724	15.022	13.129	3.376	1.964	5.466	5.513	1.172	3.120	3.308	8.589	0.918	3.109	3.746	4.143
8173	chr9	81628061	81644493	+	0	NA	Intergenic	L2c|LINE|L2	124304	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA	0.684	1.394	1.220	3.132	5.650	3.036	1.364	0.154	0.117	1.188	0.621	0.648	1.840	0.053	0.072	0.210	0.108	0.247	0.761	1.424	1.551	3.842	1.602	0.105	0.090	0.065	0.145	2.428	2.963	0.225	0.137	0.068	0.134	4.158	4.135	0.200	0.457	1.349	0.820	0.632	0.996	0.967	0.385	1.364	0.648	0.226	0.032	0.042	0.060
5938	chr4	76596390	76600721	+	0	NA	promoter-TSS (NM_012297)	promoter-TSS (NM_012297)	112	NM_203504	9908	Hs.303676	NM_012297	ENSG00000138757	G3BP2	-	G3BP stress granule assembly factor 2	protein-coding	4.761	3.045	3.234	7.421	5.132	2.739	3.570	2.667	0.117	2.082	1.107	5.231	7.703	2.363	0.128	6.267	6.493	7.545	9.416	7.441	5.702	11.169	5.448	12.704	13.502	3.462	4.019	12.916	18.213	6.198	6.417	2.136	4.671	3.820	3.333	5.526	6.634	2.571	1.387	4.713	5.533	0.636	2.885	3.570	5.231	0.696	3.426	1.226	1.768
2002	chr12	66205913	66359179	+	0	NA	intron (NM_001300918, intron 3 of 4)	AluY|SINE|Alu	-6599	NM_001292024	100129940	Hs.685856	NM_001292023	ENSG00000197301	LOC100129940	-	uncharacterized LOC100129940	protein-coding	0.671	0.575	0.568	0.117	0.184	0.083	0.093	0.299	0.085	0.072	0.111	0.045	0.259	6.566	0.187	0.284	0.225	1.013	2.789	0.359	nan	0.122	0.067	0.145	0.136	0.187	0.299	0.317	0.371	0.469	0.313	0.169	0.324	0.037	0.045	0.527	0.975	0.231	0.370	0.013	0.061	0.014	0.019	0.093	0.045	0.015	0.030	0.091	0.340
4591	chr2	171668790	171675004	+	0	NA	Intergenic	Intergenic	-1303	NM_000817	2571	Hs.420036	NM_000817	ENSG00000128683	GAD1	CPSQ1|GAD|SCP	glutamate decarboxylase 1	protein-coding	2.097	3.149	2.382	2.807	3.192	1.905	2.764	0.242	0.078	1.347	1.071	1.575	22.176	0.360	0.028	0.313	0.416	1.025	1.773	5.566	4.558	4.452	1.111	1.108	1.099	2.032	2.433	7.726	9.919	3.151	3.612	1.131	2.450	3.484	2.193	0.358	0.960	1.979	1.040	3.660	1.987	0.659	1.020	2.764	1.575	0.668	0.930	1.224	0.118
5508	chr3	121963832	121981139	+	0	NA	intron (NM_001178065, intron 1 of 6)	intron (NM_001178065, intron 1 of 6)	69304	NM_001178065	846	Hs.435615	NM_000388	ENSG00000036828	CASR	CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1	calcium sensing receptor	protein-coding	0.718	nan	0.540	0.137	0.444	0.156	0.136	0.144	0.102	0.189	0.151	0.028	1.671	0.006	0.076	0.455	0.239	0.192	0.258	0.382	0.435	0.245	0.153	0.298	0.272	0.216	nan	0.432	0.492	0.593	0.288	0.249	0.276	0.146	0.154	0.153	0.303	1.811	1.115	6.959	2.937	0.033	0.165	0.136	0.028	0.023	0.041	0.034	0.036
5873	chr4	40838396	40859522	+	0	NA	intron (NM_001166051, intron 1 of 6)	intron (NM_001166051, intron 1 of 6)	10213	NM_001166051	323	Hs.479602	NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding	0.994	nan	nan	0.793	0.640	0.302	1.271	0.177	0.069	2.545	1.095	0.967	0.890	0.085	0.105	2.292	2.702	5.541	5.189	0.857	0.702	3.318	1.025	0.540	0.582	0.208	0.308	1.388	1.898	0.844	0.885	3.277	3.614	1.775	1.762	0.528	0.751	3.153	1.622	0.170	0.203	0.523	0.259	1.271	0.967	0.097	0.178	3.614	0.244
1068	chr10	22950623	22973885	+	0	NA	intron (NM_005028, intron 1 of 9)	L2c|LINE|L2	40783	NM_001330062	5305	Hs.57079	NM_005028	ENSG00000150867	PIP4K2A	PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK	phosphatidylinositol-5-phosphate 4-kinase type 2 alpha	protein-coding	0.620	0.815	0.728	0.261	0.465	0.255	0.077	0.801	0.276	0.141	0.046	0.125	0.308	0.059	0.086	1.633	2.857	0.625	0.717	0.272	0.299	1.152	0.366	0.252	0.197	1.245	1.705	0.727	0.772	0.235	0.162	0.315	0.454	0.117	0.113	0.211	0.575	0.715	0.457	0.036	0.075	0.008	0.331	0.077	0.125	0.067	0.470	0.298	0.160
2088	chr12	95609724	95613682	+	0	NA	promoter-TSS (NM_018351)	promoter-TSS (NM_018351)	181	NM_017599	55591	Hs.24135	NM_017599	ENSG00000028203	VEZT	VEZATIN	vezatin, adherens junctions transmembrane protein	protein-coding	6.734	4.070	4.579	4.097	4.348	2.043	3.135	4.799	0.369	2.256	1.519	5.933	15.155	4.041	0.163	6.349	6.481	9.437	13.072	17.102	13.615	7.849	3.067	12.835	13.357	6.369	nan	5.991	13.926	8.995	11.374	3.300	6.909	7.983	6.633	6.259	5.481	5.311	2.960	6.028	6.170	1.491	2.467	3.135	5.933	1.887	2.632	2.637	1.541
8344	chr9	140082073	140096529	+	0	NA	intron (NM_001128228, intron 1 of 3)	intron (NM_001128228, intron 1 of 3)	5862	NM_001128228	286262	Hs.323445	NM_173691	ENSG00000176058	TPRN	C9orf75|DFNB79	taperin	protein-coding	1.615	1.843	3.134	5.564	3.589	1.812	1.310	0.844	0.156	1.457	0.701	7.627	4.858	0.758	0.095	1.825	2.900	1.728	nan	7.807	nan	2.748	0.856	1.722	1.650	0.640	0.971	5.095	4.708	2.809	2.873	1.180	1.709	1.719	2.279	1.338	1.673	2.352	1.136	4.456	2.724	0.383	0.732	1.310	7.627	1.249	1.306	0.476	0.444
486	chr1	144322832	144342100	+	0	NA	intron (NR_024510, intron 1 of 1)	intron (NR_024510, intron 1 of 1)	8293	NR_109754	728855	Hs.456578	NR_024510		LINC00623	CH17-118O6.2	long intergenic non-protein coding RNA 623	ncRNA	1.170	nan	0.940	0.887	0.381	0.134	0.419	0.552	0.142	0.720	0.436	0.824	5.618	2.148	0.163	0.921	1.022	0.998	1.745	1.592	1.427	0.731	0.266	9.800	9.330	0.485	0.757	1.124	1.450	0.656	0.420	3.379	3.929	1.076	1.413	0.444	1.046	0.796	0.594	0.724	2.198	0.707	0.163	0.419	0.824	0.024	2.795	3.647	0.420
2134	chr12	109078649	109099344	+	0	NA	intron (NM_001276471, intron 2 of 10)	MLT1F|LTR|ERVL-MaLR	7778	NM_001105237	23603	Hs.330384	NM_014325	ENSG00000110880	CORO1C	HCRNN4	coronin 1C	protein-coding	1.812	2.227	nan	1.388	1.438	0.696	2.474	2.417	0.367	0.979	0.668	1.481	5.549	0.208	0.133	0.896	1.197	1.318	2.367	3.700	3.659	2.966	1.046	3.046	3.114	2.432	3.312	2.479	2.417	4.585	3.272	0.801	1.152	2.736	3.432	0.921	2.612	3.512	1.537	2.950	4.875	0.795	0.501	2.474	1.481	1.306	1.826	0.192	0.563
4213	chr2	10585826	10601605	+	0	NA	intron (NR_110597, intron 3 of 4)	intron (NR_110597, intron 3 of 4)	3861	NR_110597	101929715	Hs.634550	NR_110597		LOC101929715	-	uncharacterized LOC101929715	ncRNA	2.332	1.217	4.672	1.314	1.641	0.950	1.427	0.544	0.163	0.975	0.474	2.216	3.002	1.897	0.117	1.875	1.786	1.588	2.746	4.139	3.574	4.865	1.918	1.790	1.710	1.411	2.220	3.429	nan	2.095	2.845	1.354	2.934	1.605	1.596	3.355	nan	1.525	1.026	0.879	2.425	0.215	1.375	1.427	2.216	0.816	3.630	0.568	1.078
3239	chr17	2290699	2342983	+	0	NA	intron (NR_028335, intron 2 of 2)	AluSx|SINE|Alu	1889	NR_028335	284009	Hs.632244	NM_001025459		LOC284009	-	uncharacterized LOC284009	ncRNA	2.298	1.675	1.575	1.228	1.939	1.029	1.978	0.658	0.163	0.779	0.279	2.222	3.910	1.148	0.092	1.692	1.647	1.522	2.632	4.014	3.809	2.861	1.990	3.033	3.151	1.072	1.653	2.940	4.872	1.499	1.411	0.447	0.626	0.975	1.097	2.439	5.066	1.219	0.738	2.702	2.331	0.249	0.711	1.978	2.222	0.587	1.336	0.242	1.968
5309	chr22	49420805	49445925	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	170783	NR_038944	100128946	Hs.535676	NR_038944	ENSG00000205632	LINC01310	WI2-81516E3.1	long intergenic non-protein coding RNA 1310	ncRNA	0.552	0.293	nan	0.042	0.362	0.235	0.102	0.036	0.051	0.188	0.092	3.568	0.446	0.047	0.091	0.216	0.111	0.111	0.112	1.827	2.091	0.706	0.241	0.079	0.088	0.107	0.222	0.755	1.049	0.956	0.995	0.151	0.209	0.095	0.218	0.040	0.087	0.954	0.718	0.087	0.113	0.049	0.032	0.102	3.568	0.373	0.113	0.051	0.020
2045	chr12	80812506	80821354	+	0	NA	Intergenic	Intergenic	-21196	NM_001145026	374462	Hs.539284	NM_001145026	ENSG00000139304	PTPRQ	DFNB84|DFNB84A|PTPGMC1|R-PTP-Q	protein tyrosine phosphatase, receptor type Q	protein-coding	0.868	0.928	0.613	0.109	0.702	0.255	0.101	1.044	0.269	1.747	0.962	0.175	0.375	1.058	0.104	0.320	0.231	0.167	0.390	0.644	0.899	3.209	0.886	0.260	0.249	0.739	0.785	0.478	0.539	0.430	0.228	0.136	0.331	8.440	8.145	0.235	0.499	1.103	0.788	0.060	0.080	1.689	0.072	0.101	0.175	0.023	0.046	0.044	0.071
686	chr1	179844719	179853757	+	0	NA	Intergenic	Intergenic	-1939	NM_015602	26092	Hs.496459	NM_015602	ENSG00000143337	TOR1AIP1	LAP1|LAP1B|LGMD2Y	torsin 1A interacting protein 1	protein-coding	nan	nan	nan	2.887	2.962	1.551	2.944	3.525	0.522	2.043	1.154	3.197	6.374	3.792	0.196	5.286	5.585	6.642	10.673	nan	5.785	5.477	2.402	11.894	13.036	4.552	5.379	4.557	6.274	4.254	4.376	6.487	10.050	3.980	4.530	4.024	nan	2.765	1.246	1.820	4.254	0.580	2.024	2.944	3.197	0.614	1.924	3.297	1.395
3149	chr16	56963517	56975246	+	0	NA	exon (NM_001010989, exon 3 of 8)	exon (NM_001010989, exon 3 of 8)	3379	NM_001010989	9709	Hs.146393	NM_014685	ENSG00000051108	HERPUD1	HERP|Mif1|SUP	homocysteine inducible ER protein with ubiquitin like domain 1	protein-coding	nan	nan	nan	6.489	5.651	3.003	3.222	1.673	0.137	1.447	0.512	4.253	4.415	1.401	0.119	2.817	3.701	1.228	1.705	8.439	6.114	4.591	1.994	6.627	6.586	1.228	nan	nan	nan	nan	4.208	2.250	3.290	1.788	1.982	2.363	nan	nan	1.525	4.062	4.692	0.218	2.721	3.222	4.253	0.538	1.626	0.886	0.956
5310	chr22	49478832	49508147	+	0	NA	Intergenic	Intergenic	230907	NR_038944	100128946	Hs.535676	NR_038944	ENSG00000205632	LINC01310	WI2-81516E3.1	long intergenic non-protein coding RNA 1310	ncRNA	0.697	0.315	nan	0.024	1.628	0.694	0.109	0.056	0.060	0.712	0.311	2.870	0.919	0.026	0.097	0.214	0.121	0.120	0.137	2.061	2.059	2.650	0.759	0.102	0.109	0.093	0.218	5.888	6.249	0.650	0.430	0.144	0.149	0.660	1.040	0.053	0.110	1.727	1.084	0.589	0.219	0.181	0.118	0.109	2.870	0.574	0.840	0.024	0.026
943	chr1	236652317	236701447	+	0	NA	Intergenic	Charlie2b|DNA|hAT-Charlie	-4632	NM_201545	3964	Hs.4082	NM_006499	ENSG00000116977	LGALS8	Gal-8|PCTA-1|PCTA1|Po66-CBP	galectin 8	protein-coding	1.212	2.047	1.451	1.434	3.127	1.734	0.439	0.378	0.170	2.072	1.162	2.779	1.940	0.597	0.134	0.486	0.485	2.460	6.433	1.200	1.430	nan	0.798	0.753	0.758	0.143	0.297	nan	2.404	0.463	0.283	0.465	0.728	1.918	2.417	0.212	0.340	nan	0.896	1.060	0.166	0.661	0.138	0.439	2.779	0.105	0.926	0.969	0.080
1887	chr12	28177944	28181946	+	0	NA	Intergenic	Intergenic	-55029	NM_198965	5744	Hs.591159	NM_002820	ENSG00000087494	PTHLH	BDE2|HHM|PLP|PTHR|PTHRP	parathyroid hormone like hormone	protein-coding	3.185	nan	nan	0.307	0.174	0.040	0.307	0.116	0.040	0.121	0.103	0.061	0.578	0.055	0.098	0.132	0.134	0.602	1.796	1.805	1.444	0.299	0.090	0.435	0.453	2.186	2.280	0.997	1.256	2.946	3.441	0.118	0.132	0.106	0.198	0.202	0.416	0.410	0.411	1.711	0.577	0.024	0.020	0.307	0.061	5.825	1.242	0.024	0.095
4258	chr2	25006703	25017730	+	0	NA	TTS (NM_001013663)	TTS (NM_001013663)	-3768	NR_136184	79172	Hs.731569	NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding	2.703	1.285	2.165	1.968	2.524	1.128	1.223	0.970	0.145	1.135	0.768	3.967	6.707	2.107	0.130	2.774	2.483	2.391	3.408	5.187	4.867	3.772	1.872	6.023	7.018	2.053	2.816	3.429	nan	3.643	3.076	1.676	2.441	1.412	1.936	2.965	3.382	2.162	1.222	1.856	2.485	0.374	1.188	1.223	3.967	1.102	0.969	0.762	1.054
1585	chr11	94961839	94966549	+	0	NA	promoter-TSS (NM_144665)	promoter-TSS (NM_144665)	52	NM_144665	143686	Hs.120633	NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding	2.576	nan	2.488	0.728	2.876	1.710	1.654	0.457	0.203	1.511	1.235	0.179	15.074	0.093	0.094	2.189	2.432	1.551	nan	4.535	3.105	0.300	0.080	3.253	3.482	4.866	6.029	3.679	5.874	2.351	2.412	3.264	7.462	7.019	6.705	2.076	nan	4.052	1.786	5.653	3.442	1.954	2.864	1.654	0.179	0.598	2.401	6.066	1.341
4709	chr2	216863553	216871318	+	0	NA	intron (NM_018000, intron 1 of 4)	intron (NM_018000, intron 1 of 4)	10911	NM_018000	55686	Hs.620391	NM_018000	ENSG00000118242	MREG	DSU|WDT2	melanoregulin	protein-coding	nan	0.670	nan	0.126	0.319	0.255	0.399	0.117	0.146	0.122	0.116	0.292	0.304	0.054	0.127	0.530	0.738	0.434	0.576	0.394	0.391	0.359	0.136	0.387	0.398	0.431	0.730	0.636	nan	1.057	1.021	0.263	0.320	0.318	0.059	0.673	1.963	0.557	0.481	0.055	0.114	0.012	4.973	0.399	0.292	0.037	0.079	0.063	0.229
2705	chr14	79877143	79893764	+	0	NA	intron (NM_001105250, intron 1 of 6)	MIR|SINE|MIR	139771	NR_073546	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding	nan	0.807	1.344	0.092	0.522	0.241	0.288	0.161	0.142	0.130	0.101	0.073	0.454	0.078	0.106	0.277	0.182	0.178	0.268	0.682	0.780	0.138	0.073	0.875	0.825	1.682	2.220	0.838	0.631	1.385	1.293	0.159	0.192	2.745	4.809	0.237	0.483	1.329	0.909	0.259	0.365	1.224	0.322	0.288	0.073	0.778	0.127	0.029	0.163
4474	chr2	114325655	114351475	+	0	NA	Intergenic	Intergenic	2108	NR_031632	100302128		NR_031632	ENSG00000221055	MIR1302-3	MIRN1302-3|hsa-mir-1302-3	microRNA 1302-3	ncRNA	2.011	nan	2.027	1.056	1.097	0.642	1.922	0.473	0.267	0.570	0.393	1.460	nan	0.831	0.142	1.673	2.130	1.396	2.148	3.088	nan	2.652	1.029	2.282	2.196	1.264	1.761	1.540	1.950	2.393	1.987	1.180	1.778	0.834	0.754	1.902	3.550	1.809	1.057	0.650	1.314	0.274	0.448	1.922	1.460	0.648	1.457	0.482	1.996
7098	chr6	166718747	166732989	+	0	NA	Intergenic	Intergenic	-3997	NM_175922	285800	Hs.731862	NM_175922	ENSG00000176381	PRR18	-	proline rich 18	protein-coding	1.567	nan	0.942	1.825	0.494	0.350	0.841	0.078	0.079	0.417	0.134	0.512	1.188	0.151	0.097	0.666	0.692	0.265	0.413	2.476	2.179	6.219	3.355	0.343	0.300	0.098	0.176	2.544	4.276	nan	1.401	0.570	0.598	0.726	0.485	0.192	0.317	0.821	0.525	0.246	0.082	0.080	0.118	0.841	0.512	0.108	0.385	0.191	0.077
690	chr1	180501541	180523246	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-15717	NR_125716	148756		NR_125716	ENSG00000236719	OVAAL	LINC01131|OVAL	ovarian adenocarcinoma amplified long non-coding RNA	ncRNA	nan	nan	1.310	0.120	0.378	0.206	4.291	0.177	0.207	0.164	0.172	0.298	0.847	0.075	0.139	0.530	0.494	0.444	0.903	1.838	nan	1.661	0.404	nan	0.433	0.990	1.528	0.481	0.475	0.445	0.205	0.402	0.624	0.495	0.451	0.351	nan	1.596	0.848	2.861	0.289	0.084	0.080	4.291	0.298	0.116	0.080	0.105	0.083
61	chr1	8679372	8713615	+	0	NA	intron (NM_012102, intron 3 of 23)	FRAM|SINE|Alu	-141520	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA	1.128	nan	1.728	0.631	0.744	0.388	1.155	0.331	0.117	0.352	0.368	0.353	0.689	0.329	0.124	0.345	0.418	0.868	2.356	1.742	1.974	1.030	0.434	0.785	0.720	1.243	nan	nan	4.762	nan	0.579	0.323	0.411	0.466	0.837	0.786	1.730	1.325	0.692	0.335	0.878	0.137	0.886	1.155	0.353	0.167	0.089	0.081	0.383
5825	chr4	3653407	3666018	+	0	NA	Intergenic	Intergenic	19870	NR_034136	100133461	Hs.554274	NR_034136	ENSG00000250632	LOC100133461	-	uncharacterized LOC100133461	ncRNA	0.580	1.403	nan	0.091	0.217	0.038	0.609	0.078	0.059	0.329	0.158	0.082	2.970	0.067	0.048	4.266	5.724	0.216	0.377	3.250	2.391	nan	0.124	0.160	0.114	0.032	0.151	2.787	2.654	0.549	0.432	0.699	0.864	0.163	0.151	0.088	0.143	nan	0.831	1.626	2.089	0.008	0.182	0.609	0.082	0.153	0.242	0.323	0.091
4475	chr2	114731729	114739519	+	0	NA	non-coding (NR_034130, exon 1 of 1)	non-coding (NR_034130, exon 1 of 1)	-1522	NR_034128	440900	Hs.662205	NR_034128	ENSG00000234199	LINC01191	VIN|lnc-ACTR3	long intergenic non-protein coding RNA 1191	ncRNA	2.025	nan	1.024	0.204	0.270	0.166	0.547	0.116	0.084	0.082	0.173	0.092	nan	0.069	0.081	1.815	2.492	5.236	12.460	0.679	nan	1.382	0.341	0.432	0.405	0.674	1.111	0.308	0.492	0.806	0.897	0.214	0.346	0.324	0.765	0.762	1.746	0.670	0.574	0.028	0.050	0.095	0.132	0.547	0.092	1.104	0.259	0.038	0.760
7419	chr7	105277002	105296962	+	0	NA	intron (NM_020725, intron 4 of 11)	AluSx1|SINE|Alu	32627	NM_138495	222255	Hs.745056	NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding	nan	1.765	2.684	0.544	0.520	0.217	1.558	0.273	0.146	0.667	0.409	1.756	1.700	0.179	0.144	3.763	4.660	0.436	0.843	1.656	1.521	3.910	0.774	0.528	0.508	1.254	1.665	1.468	2.369	1.063	0.884	1.717	2.992	1.166	2.826	1.348	nan	1.334	0.958	3.075	1.783	0.119	0.267	1.558	1.756	0.386	0.208	1.771	0.454
8321	chr9	136794787	136817433	+	0	NA	intron (NM_001134398, intron 1 of 29)	L1MC4|LINE|L1	51336	NM_003371	7410	Hs.369921	NM_003371	ENSG00000160293	VAV2	VAV-2	vav guanine nucleotide exchange factor 2	protein-coding	nan	2.316	1.405	2.118	0.407	0.234	0.421	0.135	0.056	0.638	0.340	0.258	1.536	0.086	0.060	0.382	0.948	0.204	0.367	0.994	1.218	nan	0.279	0.388	0.400	0.248	0.423	3.263	3.026	1.183	1.147	0.325	0.415	0.425	0.521	0.380	0.637	2.141	0.981	4.246	0.277	0.074	0.126	0.421	0.258	0.319	1.549	0.092	0.120
8201	chr9	93562171	93569916	+	0	NA	intron (NM_001174168, intron 1 of 12)	intron (NM_001174168, intron 1 of 12)	1834	NM_001174168	6850	Hs.371720	NM_003177	ENSG00000165025	SYK	p72-Syk	spleen associated tyrosine kinase	protein-coding	3.028	nan	5.502	6.924	5.311	2.485	2.265	0.029	0.062	2.351	1.428	3.461	9.236	0.112	0.061	1.285	2.003	2.589	nan	15.019	13.639	7.014	2.852	1.555	1.544	0.942	1.309	7.360	10.214	2.550	2.351	0.582	0.857	6.385	6.649	1.359	2.450	4.524	2.260	2.663	2.842	1.657	0.176	2.265	3.461	0.252	3.929	0.115	0.175
6076	chr4	170035362	170132867	+	0	NA	intron (NM_020870, intron 2 of 11)	intron (NM_020870, intron 2 of 11)	108135	NM_020870	57630	Hs.301804	NM_020870	ENSG00000154447	SH3RF1	POSH|RNF142|SH3MD2	SH3 domain containing ring finger 1	protein-coding	nan	nan	0.658	0.227	0.370	0.158	0.084	0.445	0.094	0.077	0.094	0.174	0.273	0.051	0.089	0.271	0.223	3.149	nan	0.211	0.246	0.166	0.073	0.292	0.286	0.404	0.546	0.429	0.447	0.335	0.182	0.244	0.357	0.113	0.159	0.399	1.064	0.441	0.377	0.036	0.077	0.040	0.232	0.084	0.174	0.017	0.053	0.124	0.208
5780	chr3	192160543	192165477	+	0	NA	intron (NM_004113, intron 2 of 5)	intron (NM_004113, intron 2 of 5)	-36172	NM_021032	2257	Hs.390250	NM_004113	ENSG00000114279	FGF12	EIEE47|FGF12B|FHF1	fibroblast growth factor 12	protein-coding	nan	1.095	0.834	0.251	0.900	0.388	0.466	0.168	0.195	0.352	0.235	0.315	nan	0.243	0.076	0.970	0.618	15.428	12.017	0.797	0.815	1.940	0.551	1.279	1.666	0.700	1.409	0.656	0.555	1.390	1.178	0.226	0.480	0.291	0.816	0.780	1.669	1.226	0.951	0.086	0.125	0.059	0.436	0.466	0.315	0.060	0.104	0.061	0.403
2654	chr14	65877783	65906803	+	0	NA	intron (NR_038170, intron 1 of 10)	L1MA9|LINE|L1	12845	NR_038170	2530	Hs.597649	NM_004480	ENSG00000033170	FUT8	-	fucosyltransferase 8	protein-coding	nan	nan	1.638	0.712	1.182	0.648	0.993	1.077	0.320	0.353	0.280	0.714	2.560	0.673	0.174	0.646	0.706	0.799	1.506	1.644	1.409	0.490	0.152	nan	1.244	0.833	1.193	1.511	nan	1.442	1.409	0.417	1.187	0.670	0.428	0.517	0.975	1.333	0.683	2.922	2.296	0.148	0.612	0.993	0.714	0.270	0.388	0.350	0.288
4144	chr19	54691658	54696687	+	0	NA	promoter-TSS (NM_001282333)	promoter-TSS (NM_001282333)	53	NM_001282333	79042	Hs.15580	NM_024075	ENSG00000170892	TSEN34	LENG5|PCH2C|SEN34|SEN34L	tRNA splicing endonuclease subunit 34	protein-coding	6.577	3.846	6.763	4.634	9.608	4.570	3.293	2.472	0.287	1.584	0.738	4.572	9.218	5.998	0.175	4.791	6.037	5.564	8.036	10.782	8.376	9.535	7.383	24.025	25.492	4.561	6.083	8.786	15.630	7.129	7.123	7.200	9.373	5.122	5.707	7.457	6.784	3.897	1.762	4.002	7.629	1.039	2.657	3.293	4.572	0.868	2.751	3.698	2.304
3627	chr17	80784644	80852436	+	0	NA	intron (NM_005993, intron 13 of 38)	intron (NM_005993, intron 13 of 38)	-20609	NM_024702	79755	Hs.464391	NM_024702	ENSG00000141579	ZNF750	ZFP750	zinc finger protein 750	protein-coding	1.015	1.115	1.278	0.592	0.556	0.248	0.819	0.205	0.136	0.533	0.271	2.151	6.255	0.113	0.104	0.962	nan	0.604	1.274	nan	1.422	1.521	0.377	0.565	0.558	0.488	0.789	3.267	4.039	0.231	0.246	0.684	1.041	0.769	0.786	0.367	0.553	1.374	0.831	1.971	8.277	0.138	0.587	0.819	2.151	0.279	0.691	0.433	0.130
8008	chr8	146124220	146128687	+	0	NA	intron (NM_021061, intron 1 of 5)	CpG	393	NM_001109689	58500	Hs.532277	NM_021061	ENSG00000196150	ZNF250	ZFP647|ZNF647	zinc finger protein 250	protein-coding	8.358	3.773	nan	6.371	5.786	3.515	2.096	2.481	0.541	1.914	0.969	7.810	17.676	2.448	0.096	3.026	3.834	4.921	5.715	12.615	9.348	nan	3.237	11.341	12.283	2.437	3.261	3.363	5.636	4.537	6.255	3.034	6.117	4.978	3.902	4.767	4.688	3.305	1.927	4.628	8.528	0.811	2.074	2.096	7.810	1.476	5.010	2.094	1.603
5907	chr4	55446383	55454247	+	0	NA	Intergenic	Intergenic	22983	NR_134657	339978		NR_134657	ENSG00000250456	LOC339978	-	uncharacterized LOC339978	ncRNA	nan	1.097	0.502	1.767	0.895	0.691	0.226	0.102	0.124	0.181	0.177	0.366	0.880	0.014	0.102	0.685	0.676	0.692	2.163	2.119	1.835	1.246	0.412	0.228	0.265	0.267	0.320	5.737	4.479	0.492	0.383	0.335	0.766	0.222	0.070	0.078	0.144	5.923	3.212	0.743	1.139	0.025	0.123	0.226	0.366	0.013	0.194	0.113	0.032
7466	chr7	125202493	125211257	+	0	NA	Intergenic	L1P3|LINE|L1	-302530	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA	1.122	0.617	0.789	0.050	0.195	0.193	0.132	0.093	0.137	0.746	0.925	0.155	0.249	0.050	0.172	0.285	0.245	0.195	0.315	0.256	0.403	0.130	0.081	0.321	0.298	3.860	4.322	0.233	0.268	10.076	12.294	0.210	0.180	1.050	0.635	2.188	3.018	0.416	0.403	0.037	0.040	0.171	0.082	0.132	0.155	0.060	1.451	0.057	1.157
3200	chr16	85060448	85072461	+	0	NA	intron (NM_001286566, intron 1 of 11)	AluY|SINE|Alu	5097	NM_014732	9764	Hs.301658	NM_014732	ENSG00000135709	KIAA0513	-	KIAA0513	protein-coding	nan	0.977	1.580	0.467	0.576	0.214	2.685	0.440	0.108	0.320	0.139	0.925	0.915	0.298	0.098	0.750	0.927	0.592	0.784	0.903	0.899	1.087	0.345	0.819	0.982	0.399	0.677	0.581	0.931	1.035	0.808	0.487	0.560	0.436	0.595	0.617	0.905	0.841	0.601	0.168	0.252	0.102	0.270	2.685	0.925	0.332	3.616	0.190	0.267
5443	chr3	104311628	104324479	+	0	NA	Intergenic	Intergenic	-371948	NR_030330	693127		NR_030330	ENSG00000208032	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA	nan	nan	0.808	0.499	5.006	2.719	0.351	0.181	0.113	1.358	0.725	1.247	2.740	0.017	0.096	0.348	0.316	0.365	0.499	0.834	0.852	8.112	3.105	0.185	0.258	0.479	0.692	0.599	0.604	0.893	0.390	0.419	0.593	2.700	2.710	0.284	0.482	1.475	0.757	0.307	0.213	0.606	0.055	0.351	1.247	0.146	0.063	0.246	0.099
5503	chr3	119863845	119870443	+	0	NA	Intergenic	AluJb|SINE|Alu	-53880	NM_002093	2932	Hs.445733	NM_002093	ENSG00000082701	GSK3B	-	glycogen synthase kinase 3 beta	protein-coding	1.094	nan	2.459	1.885	0.746	0.289	0.350	0.262	0.097	1.502	0.601	0.815	3.631	0.066	0.034	0.489	0.358	0.590	1.661	0.467	nan	15.090	7.783	0.251	0.420	nan	0.731	6.210	5.676	0.714	0.348	0.311	0.286	1.329	1.538	0.418	0.661	1.799	1.118	0.220	0.270	0.173	0.191	0.350	0.815	0.014	0.107	0.150	0.150
5536	chr3	128897579	128905282	+	0	NA	intron (NM_001127192, intron 1 of 4)	intron (NM_001127192, intron 1 of 4)	1380	NM_001127196	7555	Hs.518249	NM_003418	ENSG00000169714	CNBP	CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9	CCHC-type zinc finger nucleic acid binding protein	protein-coding	7.094	nan	4.231	3.412	6.134	3.867	3.609	5.040	0.754	3.678	2.080	3.814	4.096	2.124	0.141	6.528	5.030	6.150	9.117	6.962	7.108	10.714	6.118	12.598	13.463	4.624	nan	4.590	8.367	14.784	16.357	5.194	8.233	4.062	4.863	10.948	7.969	3.314	1.800	2.345	1.955	0.717	2.132	3.609	3.814	1.307	1.320	1.570	2.816
573	chr1	155223029	155233288	+	0	NA	intron (NM_052837, intron 4 of 7)	AluSp|SINE|Alu	-2884	NM_198264	10712	Hs.348308	NM_006589	ENSG00000160767	FAM189B	C1orf2|COTE1	family with sequence similarity 189 member B	protein-coding	nan	nan	2.212	1.166	2.035	1.020	2.315	1.698	0.487	1.266	0.923	2.099	7.675	2.470	0.137	1.971	3.264	2.957	4.751	4.336	nan	2.756	0.965	1.532	1.486	3.096	4.051	2.209	2.786	2.229	1.836	3.054	5.542	1.517	1.427	2.051	3.932	1.786	0.923	1.273	3.191	0.296	1.041	2.315	2.099	0.645	3.095	1.763	1.298
2710	chr14	81026770	81042192	+	0	NA	intron (NM_152446, intron 19 of 23)	intron (NM_152446, intron 19 of 23)	-337084	NM_000793	1734	Hs.202354	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	iodothyronine deiodinase 2	protein-coding	nan	0.736	0.747	0.168	0.267	0.167	0.198	0.204	0.152	0.062	0.073	0.093	0.274	0.105	0.105	0.592	0.441	2.984	6.428	0.416	0.527	0.281	0.113	0.620	0.552	0.455	0.671	0.257	0.328	0.751	0.460	0.247	0.348	0.227	0.364	0.244	0.673	1.089	1.092	0.059	0.110	0.006	0.088	0.198	0.093	0.025	0.013	0.083	0.186
1084	chr10	28820459	28824358	+	0	NA	promoter-TSS (NM_100486)	promoter-TSS (NM_100486)	-13	NM_016628	51322	Hs.743224	NM_016628	ENSG00000095787	WAC	BM-016|DESSH|PRO1741|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	6.227	5.775	7.411	3.357	11.217	5.882	4.360	10.366	0.785	2.857	1.232	9.481	11.713	5.921	0.128	8.771	9.424	12.560	16.392	12.836	12.196	9.968	8.428	23.581	24.046	5.214	6.861	9.066	17.637	7.377	8.471	6.784	10.063	5.381	5.959	11.796	7.919	3.052	1.482	3.252	4.609	1.624	3.570	4.360	9.481	0.949	3.749	2.118	4.049
6824	chr6	56574174	56591349	+	0	NA	intron (NM_001144769, intron 5 of 96)	LTR8A|LTR|ERV1	-75067	NM_001723	667	Hs.604915	NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding	1.343	1.318	nan	0.332	0.216	0.112	0.434	0.617	0.140	0.138	0.177	0.077	0.393	1.063	0.138	0.435	0.279	0.473	0.736	0.329	0.382	0.542	0.184	0.280	0.285	1.516	2.296	0.700	0.668	1.880	1.075	0.208	0.219	0.341	0.744	2.435	5.187	0.581	0.579	0.058	0.099	0.094	0.061	0.434	0.077	0.034	0.012	0.074	1.903
5324	chr3	9436730	9448337	+	0	NA	intron (NM_001292043, intron 1 of 24)	intron (NM_001292043, intron 1 of 24)	3149	NM_001292043	55209	Hs.288164	NM_018187	ENSG00000168137	SETD5	-	SET domain containing 5	protein-coding	3.551	3.057	4.440	2.490	3.076	1.409	1.651	2.660	0.265	1.978	1.062	1.844	7.103	3.319	0.098	3.038	3.726	5.085	7.795	5.245	4.965	5.486	2.549	11.558	11.396	2.750	2.996	4.742	8.356	11.318	9.352	3.389	5.049	3.735	5.398	5.475	6.655	1.933	1.057	2.496	2.408	0.901	2.834	1.651	1.844	0.753	1.773	1.988	1.813
638	chr1	165187599	165212487	+	0	NA	intron (NM_177398, intron 4 of 8)	MIR3|SINE|MIR	125435	NM_001174069	4009	Hs.667312	NM_177398	ENSG00000162761	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1 alpha	protein-coding	2.602	nan	1.288	0.573	1.086	0.741	1.385	0.145	0.125	1.149	0.494	0.708	2.680	0.030	0.105	0.989	2.264	0.590	0.637	2.118	nan	0.554	0.213	0.127	0.125	0.635	0.880	1.543	nan	3.878	3.974	1.733	3.804	3.984	3.663	3.361	6.087	1.382	0.966	1.405	0.776	1.207	0.660	1.385	0.708	0.479	0.098	2.825	3.170
3446	chr17	47267919	47292860	+	0	NA	Intergenic	L1MD3|LINE|L1	6354	NM_031498	2793	Hs.181781	NM_031498	ENSG00000167083	GNGT2	G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8	G protein subunit gamma transducin 2	protein-coding	1.295	1.307	nan	0.890	0.838	0.455	0.235	0.204	0.109	0.383	0.370	0.202	1.847	0.905	0.149	1.842	2.660	0.629	0.860	0.906	nan	0.773	0.228	2.216	2.362	0.503	0.750	1.878	nan	1.955	1.903	1.018	1.511	0.466	0.556	2.973	6.854	0.568	0.479	0.328	1.088	0.055	0.125	0.235	0.202	0.323	0.316	0.397	2.214
3218	chr16	88989954	88996502	+	0	NA	intron (NM_005187, intron 1 of 11)	intron (NM_005187, intron 1 of 11)	-13217	NM_001290330	100129697	Hs.689377	NM_001290330		LOC100129697	-	uncharacterized LOC100129697	protein-coding	nan	0.480	3.329	1.386	0.553	0.341	0.348	0.035	0.024	1.059	0.324	3.031	0.297	0.115	0.081	0.690	1.003	0.197	0.336	1.930	1.690	2.100	0.273	0.234	0.215	0.311	0.552	0.444	0.686	0.916	1.062	0.680	0.986	0.950	0.992	0.141	0.171	2.663	1.234	0.887	0.291	0.175	0.593	0.348	3.031	0.326	4.323	0.460	0.039
2937	chr15	70543275	70552765	+	0	NA	Intergenic	Intergenic	-157764	NM_001105192	7090	Hs.287362	NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	transducin like enhancer of split 3	protein-coding	0.892	0.662	0.973	0.278	0.887	0.525	1.303	0.118	0.051	0.148	0.138	1.572	1.831	0.012	0.062	0.594	0.974	0.204	0.384	1.318	1.372	1.714	0.442	0.165	0.253	0.272	0.459	1.962	3.216	2.427	2.400	0.539	0.808	0.222	0.151	0.287	0.602	0.610	0.524	0.433	1.628	0.010	0.100	1.303	1.572	1.604	0.106	0.652	0.239
661	chr1	172311812	172332209	+	0	NA	intron (NM_015569, intron 17 of 20)	intron (NM_015569, intron 17 of 20)	-67818	NM_139240	92346	Hs.517991	NM_139240	ENSG00000180999	C1orf105	-	chromosome 1 open reading frame 105	protein-coding	nan	nan	nan	0.146	0.384	0.196	1.772	6.346	0.382	0.327	0.315	0.200	2.064	0.170	0.095	0.736	0.799	2.203	5.024	nan	0.585	1.022	0.350	0.355	0.373	2.994	3.387	1.080	1.078	0.372	0.199	3.105	5.876	2.051	1.967	0.373	nan	0.858	0.548	0.145	0.131	0.341	0.081	1.772	0.200	0.163	0.537	3.640	0.094
3157	chr16	67412117	67438951	+	0	NA	intron (NM_015964, intron 1 of 3)	intron (NM_015964, intron 1 of 3)	1904	NM_015964	51673	Hs.534458	NM_015964	ENSG00000159713	TPPP3	CGI-38|TPPP/p20|p20|p25gamma	tubulin polymerization promoting protein family member 3	protein-coding	nan	nan	2.378	1.323	1.782	0.825	1.571	0.112	0.042	0.901	0.364	3.025	1.707	0.109	0.067	1.119	1.619	0.271	0.526	2.484	2.627	2.298	1.180	1.864	1.970	0.693	nan	1.724	3.374	1.551	1.672	0.518	0.973	1.326	0.942	1.154	1.663	2.183	1.259	1.470	3.513	0.267	1.035	1.571	3.025	0.680	0.440	0.550	0.290
2482	chr14	21849043	21853545	+	0	NA	intron (NM_007192, intron 1 of 25)	intron (NM_007192, intron 1 of 25)	1131	NM_007192	11198	Hs.213724	NM_007192	ENSG00000092201	SUPT16H	CDC68|FACTP140|SPT16|SPT16/CDC68	SPT16 homolog, facilitates chromatin remodeling subunit	protein-coding	9.525	4.108	3.990	7.832	5.486	3.342	4.591	5.424	0.227	1.807	1.232	4.581	9.617	5.874	0.190	5.363	5.053	9.409	12.753	8.546	9.400	9.220	5.791	13.713	15.071	8.219	10.578	9.491	13.781	18.022	16.504	5.843	8.030	8.206	10.434	5.367	5.383	4.289	2.317	6.539	4.733	1.608	3.679	4.591	4.581	4.921	3.947	1.930	1.517
1935	chr12	49735649	49742553	+	0	NA	Intergenic	CpG	-1599	NM_001304944	79962	Hs.659300	NM_024902	ENSG00000178401	DNAJC22	wus	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	2.677	nan	1.025	0.694	1.192	0.768	0.501	0.570	0.026	0.389	0.379	0.762	0.875	0.379	0.060	0.690	0.885	1.734	2.215	1.755	1.444	4.048	0.925	1.576	1.464	1.469	1.852	1.458	2.408	1.475	1.399	1.332	1.774	4.675	3.251	0.865	1.819	2.255	1.346	4.916	10.547	1.923	0.081	0.501	0.762	0.253	2.126	1.690	0.090
2719	chr14	86440217	86679203	+	0	NA	intron (NR_110155, intron 2 of 3)	intron (NR_110155, intron 2 of 3)	158688	NR_110155	101928767	Hs.536380	NR_110155		LOC101928767	-	uncharacterized LOC101928767	ncRNA	nan	2.624	3.971	0.131	0.252	0.130	0.198	0.176	0.136	0.068	0.098	0.125	0.286	0.041	0.128	0.278	0.171	0.239	0.323	0.407	0.534	0.167	0.087	0.430	0.417	0.246	0.360	0.370	0.341	0.589	0.213	0.104	0.200	0.199	0.286	2.842	5.026	0.473	0.484	0.065	0.107	0.059	0.092	0.198	0.125	0.044	0.047	0.064	1.269
2690	chr14	77767189	77788931	+	0	NA	intron (NM_013382, intron 2 of 20)	L1MB7|LINE|L1	9165	NM_013382	29954	Hs.132989	NM_013382	ENSG00000009830	POMT2	LGMD2N|MDDGA2|MDDGB2|MDDGC2	protein O-mannosyltransferase 2	protein-coding	3.455	2.537	2.213	2.600	1.289	0.733	2.205	1.540	0.396	0.629	0.275	1.738	3.935	0.943	0.151	1.156	1.578	1.433	2.276	2.453	2.194	1.899	0.914	2.855	3.076	1.701	2.447	3.181	nan	2.968	2.958	0.703	1.025	2.300	3.089	2.174	5.204	2.570	nan	2.156	1.610	0.512	1.021	2.205	1.738	0.534	0.679	0.333	1.371
2727	chr14	89672102	89700166	+	0	NA	intron (NM_001085471, intron 4 of 6)	intron (NM_001085471, intron 4 of 6)	197320	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding	1.888	1.137	nan	0.518	0.831	0.409	0.511	0.255	0.178	0.857	0.341	2.300	1.486	0.042	0.120	0.302	0.279	0.264	0.527	1.061	1.231	0.903	0.565	0.407	0.453	2.182	2.811	2.385	3.777	0.767	0.557	0.141	0.322	1.055	0.858	0.207	0.382	nan	1.361	0.765	0.553	0.303	0.546	0.511	2.300	0.131	0.083	0.035	0.073
4046	chr19	38683144	38705206	+	0	NA	intron (NM_015073, intron 20 of 21)	intron (NM_015073, intron 20 of 21)	20715	NM_001289978	8193	Hs.631576	NM_004647	ENSG00000011332	DPF1	BAF45b|NEUD4|neuro-d4	double PHD fingers 1	protein-coding	1.344	1.982	1.436	2.544	0.499	0.349	1.426	0.184	0.080	0.356	0.267	0.873	5.023	0.274	0.111	0.612	0.738	0.290	0.398	1.578	1.295	2.519	0.981	0.652	0.697	0.427	0.803	3.358	4.585	nan	0.990	0.373	0.413	2.323	1.413	0.395	0.638	2.823	1.453	1.746	0.517	0.561	0.045	1.426	0.873	0.557	0.880	0.085	0.196
8128	chr9	37463912	37468524	+	0	NA	promoter-TSS (NM_014872)	promoter-TSS (NM_014872)	-811	NM_014872	9925	Hs.161276	NM_014872	ENSG00000168795	ZBTB5	-	zinc finger and BTB domain containing 5	protein-coding	4.976	9.519	4.882	5.577	4.299	2.048	4.434	2.880	0.527	2.063	1.171	4.800	12.003	5.813	0.225	3.401	3.604	7.597	9.262	7.046	4.622	12.072	5.385	10.399	9.792	2.725	3.567	5.847	10.174	5.421	5.761	2.961	5.474	7.794	8.292	5.066	5.529	5.102	2.839	5.045	4.139	1.678	3.610	4.434	4.800	0.693	1.951	2.829	1.302
4567	chr2	162270306	162282723	+	0	NA	intron (NM_006593, intron 4 of 5)	intron (NM_006593, intron 4 of 5)	3909	NM_006593	10716	Hs.210862	NM_006593	ENSG00000136535	TBR1	TBR-1|TES-56	T-box, brain 1	protein-coding	0.978	5.639	nan	0.628	0.531	0.297	0.282	0.120	0.013	0.205	0.205	0.414	1.098	0.174	0.063	0.455	0.307	0.532	0.739	0.822	0.848	1.204	0.526	0.607	0.586	0.340	0.583	0.270	0.285	0.847	0.855	0.310	0.418	0.215	0.187	0.644	1.090	0.812	0.482	0.040	0.086	0.027	0.336	0.282	0.414	0.062	0.432	0.085	1.716
4328	chr2	48128851	48135159	+	0	NA	intron (NM_001190274, intron 1 of 22)	intron (NM_001190274, intron 1 of 22)	927	NM_001190274	80204	Hs.352677	NM_012167	ENSG00000138081	FBXO11	FBX11|PRMT9|UBR6|UG063H01|VIT1	F-box protein 11	protein-coding	5.429	nan	4.692	3.362	4.404	2.191	4.203	2.736	0.203	3.434	1.511	5.972	9.746	5.152	0.156	3.801	5.527	4.528	6.434	nan	9.100	7.113	3.345	18.786	19.390	3.395	4.391	6.527	10.505	9.434	10.151	3.042	7.292	3.072	2.963	9.837	9.327	nan	1.381	3.696	6.132	0.831	2.642	4.203	5.972	1.864	2.545	2.593	2.786
6676	chr6	26115181	26143374	+	0	NA	Intergenic	Intergenic	4904	NM_003512	8334	Hs.484950	NM_003512	ENSG00000180573	HIST1H2AC	H2A/l|H2AFL|dJ221C16.4	histone cluster 1 H2A family member c	protein-coding	3.560	1.973	nan	2.417	2.371	1.256	1.343	1.229	0.228	1.022	0.580	2.810	nan	2.127	0.151	3.663	5.261	2.581	nan	4.354	2.819	nan	2.568	5.791	5.996	1.985	2.682	3.553	4.885	3.256	4.427	1.363	2.712	3.110	2.733	4.511	5.017	1.814	1.074	0.913	2.771	0.450	1.278	1.343	2.810	0.463	0.890	1.402	1.343
6837	chr6	65939222	65945668	+	0	NA	intron (NM_001292009, intron 12 of 43)	L1MC3|LINE|L1	-68866	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding	nan	0.871	0.723	0.178	0.263	0.173	0.207	0.126	0.025	1.051	0.995	0.018	0.289	0.051	0.131	2.880	3.331	2.139	0.385	0.130	0.275	1.708	0.378	0.843	0.813	0.950	0.827	0.320	0.357	0.706	0.427	0.286	0.876	6.355	9.363	0.297	0.456	0.524	0.457		0.056	1.818	0.012	0.207	0.018	0.090	0.298	0.492	0.039
6709	chr6	31800987	31805546	+	0	NA	TTS (NR_002745)	TTS (NR_002745)	226	NR_002745	26801		NR_002745	ENSG00000201823	SNORD48	RNU48|U48	small nucleolar RNA, C/D box 48	snoRNA	5.159	3.810	3.963	7.506	6.547	3.106	6.976	4.032	1.136	2.964	1.947	10.878	12.698	6.667	0.299	7.945	7.642	7.130	10.250	nan	8.535	9.430	4.681	12.654	13.524	4.492	5.570	11.288	12.253	9.977	8.825	4.966	8.843	6.754	7.949	6.965	10.262	4.133	1.984	5.147	4.859	1.907	3.818	6.976	10.878	2.268	2.762	3.210	3.324
6097	chr4	182773294	182784908	+	0	NA	Intergenic	Intergenic	286567	NR_125905	90768	Hs.175465	NR_027107		LOC90768	-	uncharacterized LOC90768	ncRNA	nan	0.637	nan	0.053	0.389	0.262	0.110	0.116	0.014	0.270	0.113	0.152	0.157	0.141	0.088	0.233	0.137	0.364	0.694	0.287	0.352	7.389	2.337	0.140	0.146	0.096	0.141	2.814	1.188	0.345	0.168	0.129	0.150	0.467	0.506	0.074	0.118	0.630	0.442	0.100	0.045	0.065	0.103	0.110	0.152				0.031
6780	chr6	44182305	44195758	+	0	NA	intron (NM_001304466, intron 1 of 12)	intron (NM_001304466, intron 1 of 12)	1789	NM_001304466	2030	Hs.25450	NM_004955	ENSG00000112759	SLC29A1	ENT1	solute carrier family 29 member 1 (Augustine blood group)	protein-coding	2.880	1.655	3.377	1.183	0.923	0.465	1.528	1.106	0.180	1.283	0.600	1.497	1.803	1.841	0.134	20.552	21.937	2.941	2.124	1.804	1.658	8.362	2.402	5.729	6.292	0.830	1.620	3.311	nan	1.976	1.865	3.902	5.859	1.472	1.138	2.358	4.717	1.823	0.721	0.833	0.898	0.383	0.697	1.528	1.497	0.353	1.030	3.614	0.937
3025	chr16	2194105	2206889	+	0	NA	intron (NM_014353, intron 2 of 8)	intron (NM_014353, intron 2 of 8)	1846	NM_014353	25837	Hs.3797	NM_014353	ENSG00000167964	RAB26	V46133	RAB26, member RAS oncogene family	protein-coding	2.624	nan	7.970	2.513	1.867	1.142	1.144	0.596	0.190	1.710	0.643	0.938	5.096	2.400	0.127	4.013	6.035	1.014	1.383	1.883	1.870	9.892	2.453	2.654	2.668	1.992	nan	3.437	3.045	6.233	9.595	0.762	1.543	2.209	1.939	7.109	7.045	2.583	1.404	0.861	2.778	0.464	1.412	1.144	0.938	1.018	1.661	0.384	2.205
2910	chr15	65595902	65597562	+	0	NA	Intergenic	Intergenic	-17551	NM_001316944	54956	Hs.30634	NM_017851	ENSG00000138617	PARP16	ARTD15|C15orf30|pART15	poly(ADP-ribose) polymerase family member 16	protein-coding	4.099	4.752	nan	3.533	3.757	1.404	4.776	4.473	0.288	2.505	1.728	3.055	13.039	6.512	0.208	14.746	12.838	9.084	14.462	8.608	7.968	8.113	12.480	16.472	18.204	7.554	8.392	7.690	14.876	15.407	13.232	12.853	12.978	11.529	11.856	12.594	7.732	4.273	2.507	2.351	3.083	0.889	2.249	4.776	3.055	1.023	4.163	4.274	0.894
1991	chr12	63174249	63183138	+	0	NA	intron (NM_020700, intron 4 of 9)	intron (NM_020700, intron 4 of 9)	149972	NM_020700	57460	Hs.435479	NM_020700	ENSG00000111110	PPM1H	ARHCL1|NERPP-2C|URCC2	protein phosphatase, Mg2+/Mn2+ dependent 1H	protein-coding	1.155	0.661	1.243	0.220	0.299	0.193	0.202	0.625	0.221	0.158	0.273	0.149	0.402	0.037	0.092	3.966	4.043	8.581	6.588	0.396	nan	0.514	0.256	1.105	1.242	0.629	0.884	0.997	0.977	0.477	0.315	2.721	5.449	0.164	0.282	0.337	0.579	1.310	1.215	0.085	0.199	0.022	0.067	0.202	0.149	0.022	0.103	2.824	0.104
8369	chrX	12988069	13008308	+	0	NA	Intergenic	Intergenic	4962	NM_021109	7114	Hs.437277	NM_021109	ENSG00000205542	TMSB4X	FX|PTMB4|TB4X|TMSB4	thymosin beta 4, X-linked	protein-coding	1.663	nan	1.694	2.269	2.172	0.998	0.593	2.011	0.167	0.317	0.189	1.508	5.237	2.871	0.080	0.446	0.470	1.459	3.023	2.548	1.967	6.612	2.503	1.037	1.008	1.481	1.853	2.286	2.553	2.122	2.268	0.646	1.017	2.120	2.015	1.070	1.864	1.344	0.791	0.455	0.273	0.381	0.506	0.593	1.508	0.454	1.354	0.356	0.293
927	chr1	233266578	233281801	+	0	NA	intron (NM_014801, intron 20 of 33)	intron (NM_014801, intron 20 of 33)	157270	NM_014801	80003	Hs.370605	NM_014801	ENSG00000135749	PCNX2	PCNXL2	pecanex homolog 2 (Drosophila)	protein-coding	0.952	1.136	0.751	0.287	0.434	0.223	0.202	0.241	0.130	0.125	0.180	0.101	0.281	0.056	0.120	0.473	0.407	5.507	6.474	0.410	0.486	nan	0.114	0.221	0.257	0.367	0.692	nan	0.491	0.342	0.170	0.109	0.139	0.107	0.164	0.223	0.393	nan	0.504	0.069	0.078	0.030	0.113	0.202	0.101	0.019	0.040	0.052	0.164
5475	chr3	114361925	114370900	+	0	NA	intron (NR_121662, intron 3 of 6)	MIRb|SINE|MIR	-22620	NM_001164346	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding	1.020	nan	0.684	0.146	0.491	0.197	0.212	1.659	0.214	0.105	0.193	0.118	0.157	0.119	0.116	0.443	0.223	6.590	4.544	0.346	nan	0.470	0.274	0.305	0.270	nan	1.454	0.265	0.235	0.707	0.254	0.071	0.243	0.070	0.091	0.262	0.273	0.478	0.476	0.167	0.060	0.011	0.107	0.212	0.118	0.022	0.009	0.055	0.082
5855	chr4	26228222	26250505	+	0	NA	Intergenic	MIRb|SINE|MIR	-81969	NM_203283	3516	Hs.479396	NM_005349	ENSG00000168214	RBPJ	AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	1.207	0.914	nan	1.826	1.282	0.588	0.963	0.108	0.080	1.140	0.621	2.667	2.524	0.044	0.082	0.343	0.145	0.219	0.337	1.797	1.802	1.999	0.598	0.288	0.252	0.899	1.162	2.071	2.167	2.450	2.396	0.135	0.305	1.018	1.124	0.724	1.409	nan	1.632	0.385	1.687	0.410	0.146	0.963	2.667	0.205	1.414	0.106	0.155
3180	chr16	75974158	75985425	+	0	NA	Intergenic	Intergenic	298156	NR_144545	54386	Hs.301419	NM_018975	ENSG00000166848	TERF2IP	DRIP5|RAP1	TERF2 interacting protein	protein-coding	0.517	0.498	nan	0.110	0.440	0.227	0.918	0.054	0.129	0.152	0.155	0.131	0.217	0.038	0.069	1.046	0.848	0.069	0.085	0.386	0.491	8.107	4.113	0.453	0.436	0.125	0.174	0.389	0.378	0.536	0.349	0.332	0.672	0.070	0.044	0.104	0.162	0.877	0.751	0.020	0.112	0.009	0.064	0.918	0.131	0.165	0.009	0.341	0.055
652	chr1	168662663	168684518	+	0	NA	intron (NM_001937, intron 2 of 3)	intron (NM_001937, intron 2 of 3)	24852	NM_001937	1805	Hs.80552	NM_001937	ENSG00000143196	DPT	TRAMP	dermatopontin	protein-coding	1.109	nan	1.171	0.107	0.244	0.139	1.145	0.494	0.155	0.143	0.129	0.132	0.398	0.045	0.125	0.610	0.651	2.302	8.633	0.417	nan	0.668	0.186	0.111	0.140	0.579	0.735	0.254	nan	0.374	0.185	0.317	0.455	0.194	0.280	0.561	1.158	0.455	0.485	0.028	0.166	0.083	0.245	1.145	0.132	0.075	0.047	0.091	0.168
7194	chr7	20817287	20845428	+	0	NA	Intergenic	Intergenic	-4849	NM_182700	221833	Hs.195922	NM_182700	ENSG00000164651	SP8	BTD	Sp8 transcription factor	protein-coding	3.282	1.800	2.199	1.024	2.050	1.162	0.884	0.127	0.068	3.086	1.993	1.503	7.318	0.443	0.135	0.303	0.231	0.672	nan	1.800	1.499	1.575	0.620	0.705	0.670	0.805	1.171	0.989	1.356	0.478	0.275	0.148	0.176	10.340	9.187	0.127	nan	1.355	0.868	0.053	1.159	3.044	1.882	0.884	1.503	0.021	0.952	0.035	0.035
7929	chr8	128759870	128889319	+	0	NA	intron (NR_003367, intron 1 of 8)	AluJo|SINE|Alu	16386	NR_031609	100302185		NR_031609	ENSG00000249859	MIR1204	hsa-mir-1204	microRNA 1204	ncRNA	nan	nan	nan	0.303	0.552	0.258	0.089	0.889	0.210	0.160	0.140	0.077	nan	0.623	0.106	6.406	7.221	0.856	1.577	0.526	0.513	0.920	0.355	nan	nan	9.722	12.222	2.392	2.592	35.252	25.940	0.416	0.780	0.207	0.292	5.322	8.949	0.276	0.371	0.290	0.073	0.062	0.082	0.089	0.077	3.171	0.517	0.318	3.909
4445	chr2	99075936	99083645	+	0	NA	intron (NM_001134225, intron 1 of 24)	intron (NM_001134225, intron 1 of 24)	18469	NM_001134224	3631	Hs.469386	NM_001566	ENSG00000040933	INPP4A	INPP4|TVAS1	inositol polyphosphate-4-phosphatase type I A	protein-coding	1.578	1.259	1.985	1.612	0.450	0.166	0.762	0.157	0.084	0.243	0.191	0.641	1.992	0.014	0.091	0.467	1.009	0.495	0.844	1.445	1.459	10.175	3.462	0.609	0.764	1.383	2.033	2.503	2.419	1.160	0.648	0.361	0.442	1.736	1.441	1.792	2.535	0.978	0.571	0.476	0.690	0.345	0.186	0.762	0.641	0.388	0.853	0.104	0.941
7745	chr8	73602339	73612044	+	0	NA	intron (NM_004770, intron 2 of 2)	intron (NM_004770, intron 2 of 2)	-37089	NR_110656	101926908	Hs.680588	NR_110656	ENSG00000253726	LOC101926908	-	uncharacterized LOC101926908	ncRNA	1.259	0.862	0.988	0.523	0.866	0.412	0.080	0.138	0.151	0.322	0.241	1.171	0.531	0.090	0.096	3.238	2.955	6.074	1.722	0.644	0.879	1.912	0.728	7.361	7.330	0.684	1.082	0.823	0.745	0.483	0.228	3.575	5.663	1.098	1.721	0.415	0.946	1.239	0.814	0.063	0.322	0.495	0.139	0.080	1.171		0.386	3.977	0.420
3851	chr18	57042577	57063651	+	0	NA	Intergenic	Intergenic	-26606	NM_005570	3998	Hs.465295	NM_005570	ENSG00000074695	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	lectin, mannose binding 1	protein-coding	nan	1.053	1.065	0.465	0.334	0.115	1.146	0.062	0.061	0.453	0.295	0.705	1.131	0.010	0.059	0.341	0.256	0.173	0.284	1.309	1.728	1.711	0.404	0.465	0.486	0.200	0.361	1.392	1.411	1.042	0.596	0.171	0.182	5.051	5.723	1.181	3.259	nan	1.848	0.095	0.688	2.079	0.220	1.146	0.705	0.156	0.505	0.071	0.714
844	chr1	211649710	211668887	+	0	NA	intron (NM_183059, intron 1 of 2)	AluSx3|SINE|Alu	6961	NM_001164688	343035	Hs.632495	NM_183059	ENSG00000198570	RD3	C1orf36|LCA12	retinal degeneration 3	protein-coding	1.667	1.679	2.232	0.109	0.409	0.259	0.984	0.147	0.075	0.246	0.168	0.136	nan	0.045	0.091	0.394	0.372	0.409	0.628	0.628	0.755	nan	0.372	0.507	0.506	0.453	nan	0.382	0.498	1.521	1.330	0.177	0.158	0.551	0.682	3.960	10.269	0.905	0.706	0.081	0.027	0.163	0.077	0.984	0.136	0.147	0.064	0.052	4.290
4447	chr2	99481849	99500136	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	61692	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211 like	protein-coding	1.272	1.527	3.089	2.482	3.714	1.996	0.521	0.099	0.079	0.925	0.707	5.532	5.683	0.029	0.082	0.297	0.203	0.211	0.485	8.903	8.124	4.093	1.257	0.886	0.838	0.171	0.377	3.674	5.056	0.435	0.298	0.247	0.413	1.228	0.945	0.213	0.337	1.980	1.162	5.729	3.245	0.244	0.152	0.521	5.532	0.311	0.621	0.158	0.054
4552	chr2	155847348	155893166	+	0	NA	Intergenic	L1MC4a|LINE|L1	315164	NM_001260509	3760	Hs.591606	NM_002239	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	potassium voltage-gated channel subfamily J member 3	protein-coding	nan	0.750	nan	0.104	0.283	0.154	0.064	0.086	0.098	0.115	0.127	0.086	0.304	0.028	0.075	0.318	0.260	0.177	0.189	0.119	0.151	0.463	0.166	0.283	0.245	7.536	8.108	0.209	0.257	0.457	0.240	0.135	0.247	0.112	0.155	0.325	0.478	0.299	0.284	0.039	0.029	0.023	0.048	0.064	0.086	0.056	0.033	0.065	0.068
5767	chr3	189507049	189525612	+	0	NA	intron (NM_001329146, intron 1 of 10)	intron (NM_001329146, intron 1 of 10)	8881	NM_001114981	8626	Hs.137569	NM_003722	ENSG00000073282	TP63	AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L	tumor protein p63	protein-coding	1.285	1.353	0.960	0.247	0.472	0.224	0.284	0.284	0.078	0.127	0.174	0.084	0.789	0.036	0.068	0.266	0.172	0.317	0.873	0.403	0.444	4.601	1.387	0.317	0.339	0.156	0.292	0.629	0.633	0.659	0.293	0.096	0.183	1.311	1.137	0.537	1.104	0.544	0.542	0.054	0.091	0.163	0.146	0.284	0.084	0.020	0.068	0.022	0.203
272	chr1	43931289	43944129	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	-18049	NM_001243526	81888	Hs.709864	NM_031207	ENSG00000178922	HYI	HT036	hydroxypyruvate isomerase (putative)	protein-coding	nan	0.902	nan	0.082	0.252	0.116	0.418	0.531	0.125	0.083	0.182	0.155	0.413	0.051	0.082	0.369	0.355	1.429	7.583	0.517	0.513	0.402	0.123	0.151	0.151	0.220	nan	nan	1.483	0.694	0.499	0.301	nan	0.084	0.184	0.446	0.891	0.639	0.492	0.212	0.091	0.015	0.036	0.418	0.155	0.061	0.047	0.077	0.326
4930	chr20	32306099	32322561	+	0	NA	Intergenic	AluSx|SINE|Alu	-5236	NM_032819	84905	Hs.516989	NM_032819	ENSG00000131061	ZNF341	-	zinc finger protein 341	protein-coding	1.413	2.620	1.934	1.639	1.127	0.633	1.296	0.651	0.331	0.580	0.494	1.827	3.420	1.260	0.174	2.445	3.215	1.047	1.839	1.603	nan	4.430	1.494	1.716	1.755	1.319	1.829	2.399	2.899	2.472	2.461	1.211	1.991	2.510	2.436	1.222	nan	0.992	0.644	0.456	1.023	0.483	0.935	1.296	1.827	0.484	0.610	0.692	0.482
2518	chr14	29807269	29831826	+	0	NA	Intergenic	Intergenic	-564554	NR_135255	105370424	Hs.375809	NR_135255	ENSG00000257056	LOC105370424	-	uncharacterized LOC105370424	ncRNA	1.316	0.834	0.710	0.193	0.252	0.163	0.211	0.249	0.099	0.090	0.134	0.210	0.322	0.080	0.130	0.233	0.115	0.227	0.226	0.410	0.589	1.574	0.500	0.122	0.137	7.157	7.419	0.292	0.341	0.975	0.600	0.105	0.155	0.510	0.555	0.288	0.465	0.532	0.465	0.036	0.148	0.225	0.184	0.211	0.210	0.075	0.074	0.020	0.126
8244	chr9	114791854	114815046	+	0	NA	3' UTR (NM_022486, exon 17 of 17)	3' UTR (NM_022486, exon 17 of 17)	109070	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA	0.669	0.705	nan	0.206	0.257	0.156	0.072	1.367	0.251	0.153	0.096	0.067	0.269	1.227	0.114	0.186	0.130	1.137	4.306	0.352	0.389	0.187	0.101	0.261	0.294	0.166	0.287	0.566	nan	0.442	0.203	0.110	0.111	0.332	0.338	0.223	0.441	nan	0.543	0.067	0.099	0.087	0.058	0.072	0.067	0.017	0.053	0.035	0.113
2376	chr13	94678435	94687167	+	0	NA	intron (NM_005708, intron 4 of 8)	intron (NM_005708, intron 4 of 8)	157444	NR_046535	100873972	Hs.670344	NR_046535	ENSG00000236520	GPC6-AS1	-	GPC6 antisense RNA 1	ncRNA	0.936	1.513	0.833	0.051	0.793	0.288	1.291	0.399		0.071	0.065	0.326	0.471	0.025	0.033	0.672	0.479	8.980	9.018	0.468	0.646	0.733	0.314	0.102	0.139	0.372	0.309	0.282	0.321	0.344	0.213	0.390	0.591	1.638	2.006	0.479	1.011	0.214	0.128	0.264	0.357	0.252	0.662	1.291	0.326	0.076	0.058	0.137	0.140
6010	chr4	118698345	118706661	+	0	NA	Intergenic	Intergenic	-252997	NM_004784	9348	Hs.480596	NM_004784	ENSG00000164100	NDST3	HSST3	N-deacetylase and N-sulfotransferase 3	protein-coding	0.493	0.735	0.731	0.074	0.235	0.264	0.015	0.172	0.038	0.205	0.095	0.043	0.230	0.039	0.062	0.172	0.110	0.147	0.258	0.170	0.268	0.171	0.037	0.157	0.146	5.825	5.465	0.243	0.180	0.595	0.223	0.086	0.199	1.042	1.223	0.276	0.685	0.113	0.198		0.097	0.146	0.029	0.015	0.043	0.011	0.012	0.012	0.015
7687	chr8	59569540	59573468	+	0	NA	intron (NM_003580, intron 1 of 30)	intron (NM_003580, intron 1 of 30)	462	NM_001144772	8439	Hs.372000	NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding	11.120	6.373	5.522	3.261	5.730	3.103	7.228	2.740	0.205	3.105	1.912	7.311	9.836	5.459	0.130	9.446	11.657	9.014	13.818	19.087	18.428	10.084	5.754	8.583	8.082	5.838	nan	6.239	9.662	10.900	11.949	6.131	11.150	10.724	7.610	11.360	7.430	5.937	3.916	4.159	4.581	1.434	5.372	7.228	7.311	0.886	5.268	2.325	5.171
3100	chr16	28920624	28937965	+	0	NA	intron (NM_024816, intron 3 of 12)	MIRb|SINE|MIR	7238	NM_024816	79874	Hs.555978	NM_024816	ENSG00000177548	RABEP2	FRA	rabaptin, RAB GTPase binding effector protein 2	protein-coding	1.539	1.158	nan	1.826	1.537	0.786	0.609	0.421	0.110	0.548	0.300	1.088	3.533	0.796	0.097	1.159	1.496	1.301	1.753	1.689	1.335	nan	1.403	3.135	3.240	0.813	0.985	6.028	6.961	1.331	1.371	0.925	1.489	0.976	0.745	1.514	3.252	1.114	0.702	1.814	0.788	0.147	0.403	0.609	1.088	0.454	0.800	0.799	0.486
5263	chr22	38567401	38600236	+	0	NA	Intergenic	L2a|LINE|L2	-5982	NM_001199562	8398	Hs.170479	NM_003560	ENSG00000184381	PLA2G6	CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta	phospholipase A2 group VI	protein-coding	1.739	nan	1.321	1.363	1.967	1.012	1.066	1.019	0.210	0.566	0.302	2.158	1.942	1.172	0.126	3.718	4.202	2.477	3.120	1.809	1.703	1.770	0.785	2.290	2.478	0.892	nan	3.061	3.799	nan	1.096	0.833	0.902	1.572	2.420	0.926	1.435	1.672	0.879	1.232	0.897	0.337	0.282	1.066	2.158	0.445	2.258	0.458	0.481
6172	chr5	11376894	11403185	+	0	NA	intron (NM_001288715, intron 5 of 20)	Tigger4b|DNA|TcMar-Tigger	198990	NM_001288715	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding	nan	nan	nan	0.117	0.168	0.093	0.298	0.199	0.177	0.421	0.341	0.069	nan	0.050	0.126	0.618	0.599	0.504	0.911	0.244	0.348	0.161	0.093	0.459	0.435	nan	4.000	0.249	0.245	1.115	0.983	0.390	0.623	0.405	0.275	0.246	nan	0.585	0.608	0.059	0.115	0.134	0.012	0.298	0.069	0.321	0.065	0.132	0.047
7750	chr8	73722008	73743956	+	0	NA	intron (NM_004770, intron 2 of 2)	intron (NM_004770, intron 2 of 2)	88702	NR_110656	101926908	Hs.680588	NR_110656	ENSG00000253726	LOC101926908	-	uncharacterized LOC101926908	ncRNA	1.967	1.464	1.617	2.826	2.319	1.180	0.732	0.132	0.139	1.321	0.503	6.516	2.336	0.020	0.089	0.580	0.814	0.341	0.435	6.107	6.199	6.044	3.502	0.673	0.597	0.754	1.223	3.453	5.264	0.850	0.727	0.429	0.728	4.076	4.595	1.009	3.101	4.689	2.172	2.331	3.171	1.169	0.228	0.732	6.516	0.098	1.393	0.437	0.985
3787	chr18	46450106	46488704	+	0	NA	promoter-TSS (NM_001190823)	promoter-TSS (NM_001190823)	-228	NM_001190823	4092	Hs.465087	NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding	nan	1.342	2.081	3.166	1.174	0.573	3.540	0.936	0.206	0.981	0.364	3.028	2.581	0.637	0.075	2.179	3.068	2.664	4.365	2.414	2.536	3.525	1.343	1.287	1.280	0.634	0.914	1.670	1.942	1.155	1.078	1.322	2.641	2.761	3.012	0.733	nan	3.074	1.713	1.395	0.308	0.783	0.855	3.540	3.028	0.367	1.934	1.722	0.288
1627	chr11	110873899	110885505	+	0	NA	Intergenic	L2c|LINE|L2	-247005	NM_198498	341032	Hs.298685	NM_198498	ENSG00000150750	C11orf53	-	chromosome 11 open reading frame 53	protein-coding	0.673	0.726	0.515	0.097	0.310	0.153	0.166	0.109	0.014	0.081	0.147	0.041	0.377	0.066	0.109	8.895	13.613	2.093	1.304	0.362	0.514	0.336	0.131	0.901	0.917	0.714	nan	0.343	0.357	0.329	0.136	2.821	4.578	0.153	0.167	0.196	0.465	0.661	0.700	0.072	0.053	0.008	0.083	0.166	0.041	0.036	0.044	4.309	0.086
3562	chr17	74577627	74596851	+	0	NA	Intergenic	AluSx1|SINE|Alu	-5094	NM_006456	10610	Hs.592105	NM_006456	ENSG00000070731	ST6GALNAC2	SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	1.892	2.414	0.891	0.558	3.895	1.859	0.430	0.301	0.226	0.401	0.211	1.028	8.949	0.253	0.124	0.633	0.604	1.100	1.667	2.055	1.821	3.695	0.753	0.416	0.493	nan	0.582	1.681	1.813	1.373	1.025	0.650	0.977	1.434	1.316	0.268	0.582	nan	1.237	0.689	2.382	0.256	1.632	0.430	1.028	0.947	0.338	0.416	0.084
6145	chr5	3749246	3756420	+	0	NA	Intergenic	Intergenic	156665	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding	0.367	0.735	0.758	0.099	0.128	0.067	0.123	0.067	0.181		0.147	0.056	0.349	0.031	0.119	3.292	1.638	7.847	nan	0.469	0.541	0.089	0.042	0.020	0.065	0.209	0.236	nan	0.216	nan	0.355	0.628	0.948	0.063	0.041	0.103	0.155	0.160	nan	0.024	0.049	0.013		0.123	0.056	0.081	0.028	0.389	0.017
700	chr1	182196064	182216845	+	0	NA	intron (NR_104175, intron 2 of 2)	intron (NR_104175, intron 2 of 2)	76742	NR_104175	400799	Hs.634884	NR_104175	ENSG00000228918	LINC01344	GS1-122H1.2	long intergenic non-protein coding RNA 1344	ncRNA	nan	nan	1.397	1.341	0.328	0.185	1.011	0.087	0.140	0.468	0.219	0.241	4.683	0.073	0.096	0.540	0.401	0.665	1.498	0.808	nan	0.213	0.090	nan	0.463	0.870	1.124	1.746	1.933	0.514	0.223	0.500	0.517	0.379	0.763	0.371	nan	0.964	0.688	0.665	0.786	0.083	0.076	1.011	0.241	0.094	0.025	0.116	0.170
1019	chr10	12304296	12309074	+	0	NA	Intergenic	Intergenic	-68542	NM_001321647	11164	Hs.555956	NM_014142	ENSG00000165609	NUDT5	YSA1|YSA1H|YSAH1|hNUDT5	nudix hydrolase 5	protein-coding	nan	2.530	1.045	3.812	2.053	1.340	1.043	0.569	0.235	1.078	0.469	2.175	3.451	0.226	0.072	1.340	0.786	2.009	4.695	2.907	2.342	12.792	8.896	1.000	1.157	1.011	1.716	6.175	11.095	0.665	0.614	0.659	1.177	2.859	1.995	0.228	0.654	1.576	1.097	1.160	1.547	0.400	0.332	1.043	2.175	0.406	1.126	0.538	0.076
3369	chr17	34889372	34892418	+	0	NA	5' UTR (NM_178517, exon 1 of 3)	5' UTR (NM_178517, exon 1 of 3)	306	NM_178517	284098	Hs.378885	NM_178517	ENSG00000277161	PIGW	Gwt1|HPMRS5	phosphatidylinositol glycan anchor biosynthesis class W	protein-coding	8.973	7.035	5.323	6.232	12.791	7.017	7.952	3.906	0.578	6.476	3.112	6.782	17.569	6.564	0.152	14.439	11.065	8.604	12.997	9.855	7.929	13.939	6.714	19.301	20.340	8.143	9.712	15.598	22.373	15.406	17.464	6.798	10.450	14.028	15.652	11.585	11.151	6.600	3.336	10.659	9.525	2.338	5.526	7.952	6.782	2.330	5.044	3.407	4.742
6274	chr5	56863392	56868521	+	0	NA	promoter-TSS (NR_120607)	promoter-TSS (NR_120607)	-213	NR_120607	100996645	Hs.582496	NR_120607		LINCR-0003	-	uncharacterized LincR-0003	ncRNA	nan	nan	0.655	0.035	0.158	0.125	0.051	0.162	0.157	0.007	0.094	0.023	0.245	0.227	0.110	0.562	0.644	10.078	9.376	0.187	0.178	nan	0.111	0.124	0.226	0.476	0.698	0.112	0.141	nan	0.190	0.092	0.116	0.065	0.074	0.202	0.305	0.737	0.520	0.011	0.085	0.074	0.078	0.051	0.023	0.038	0.020	0.019	0.024
4953	chr20	41375341	41381275	+	0	NA	intron (NM_007050, intron 6 of 30)	intron (NM_007050, intron 6 of 30)	64185	NR_110004	101927159	Hs.570383	NR_110004	ENSG00000229042	LOC101927159	-	uncharacterized LOC101927159	ncRNA	nan	nan	0.474	0.118	0.089	0.084	0.131	0.150	0.109	0.080	0.069	0.081	0.567	0.005	0.097	4.267	3.669	10.142	4.249	0.219	0.316	nan	0.112	0.187	0.176	0.240	0.369	2.437	1.527	nan	0.330	1.676	3.114	0.021	0.076	0.424	0.496	0.601	0.420	0.215	0.120	0.004	0.084	0.131	0.081		0.017	1.210	0.247
5342	chr3	21463340	21469100	+	0	NA	intron (NM_024697, intron 6 of 7)	intron (NM_024697, intron 6 of 7)	19002	NR_002311	391518	Hs.543226	NR_002311		VENTXP7	HPX42|VENTX1	VENT homeobox pseudogene 7	pseudo	0.561	0.639	0.557	0.061	0.051	0.028	0.156	0.314	0.057	0.054	0.262	0.084	0.111	0.019	0.076	0.184	0.144	9.059	6.214	0.207	0.207	0.083	0.054	0.199	0.137	0.413	0.629	0.308	0.397	nan	0.179	0.075	0.205	0.051	0.061	0.174	0.196	0.125	0.256	0.048	0.104		0.041	0.156	0.084		0.064	0.119	0.043
7614	chr8	20543834	20559096	+	0	NA	Intergenic	Intergenic	-259679	NR_130773	102467222	Hs.444226	NR_130773	ENSG00000253147	LOC102467222	-	uncharacterized LOC102467222	ncRNA	nan	0.991	nan	0.030	1.089	0.482	0.292	0.049	0.074	0.224	0.200	0.047	0.335	0.028	0.094	0.447	0.443	0.077	0.109	nan	0.765	nan	0.203	0.168	0.129	0.113	0.187	0.641	0.525	0.392	0.189	0.172	0.204	0.509	0.733	0.268	0.392	nan	nan	1.209	0.053	0.160	0.046	0.292	0.047		0.091	0.077	0.113
6044	chr4	151952361	151968337	+	0	NA	Intergenic	MER41B|LTR|ERV1	-23700	NM_006726	987	Hs.480938	NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA	LPS responsive beige-like anchor protein	protein-coding	nan	1.032	0.821	2.979	2.648	1.426	0.154	0.119	0.130	0.611	0.380	5.350	1.715	0.047	0.093	0.208	0.151	0.294	0.466	2.889	3.047	2.763	1.103	1.004	1.192	0.190	0.338	3.164	3.959	0.359	0.150	0.320	0.631	0.614	0.296	0.264	0.452	1.159	0.648	0.620	0.501	0.091	0.605	0.154	5.350	0.025	0.132	0.279	0.069
8028	chr9	5831756	5845282	+	0	NA	Intergenic	AluJo|SINE|Alu	-5438	NM_024896	79956	Hs.591078	NM_024896	ENSG00000099219	ERMP1	FXNA|KIAA1815|bA207C16.3	endoplasmic reticulum metallopeptidase 1	protein-coding	1.016	4.650	1.717	1.214	0.719	0.319	1.002	0.395	0.095	0.906	0.473	0.715	1.780	0.353	0.076	0.619	0.804	1.129	1.294	1.343	1.371	6.834	1.518	1.544	1.630	1.080	1.593	1.808	1.612	0.712	0.734	0.395	0.901	1.811	2.124	0.519	nan	2.639	1.704	0.323	0.506	0.176	0.423	1.002	0.715	0.286	1.889	0.227	0.110
3638	chr18	2569732	2575030	+	0	NA	promoter-TSS (NM_001308401)	promoter-TSS (NM_001308401)	871	NM_006101	10403	Hs.414407	NM_006101	ENSG00000080986	NDC80	HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80	NDC80, kinetochore complex component	protein-coding	4.232	3.662	3.070	6.170	5.413	2.996	1.257	3.100	0.247	2.550	1.230	8.727	nan	4.285	0.283	6.686	6.725	6.119	8.614	13.128	13.117	10.106	6.044	14.986	16.474	4.115	nan	7.426	9.544	nan	7.082	3.059	4.335	7.912	10.805	4.655	nan	5.007	2.807	6.224	2.989	1.865	3.047	1.257	8.727	1.024	1.580	1.246	1.972
2081	chr12	93962892	93970272	+	0	NA	5' UTR (NM_003877, exon 2 of 3)	5' UTR (NM_003877, exon 2 of 3)	280	NM_001270471	8835	Hs.485572	NM_003877	ENSG00000120833	SOCS2	CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2	suppressor of cytokine signaling 2	protein-coding	2.230	0.810	1.840	1.183	0.385	0.186	2.397	4.674	0.614	0.693	0.475	1.333	nan	0.990	0.111	2.012	2.880	1.372	1.157	1.412	0.820	5.639	1.626	4.004	4.047	5.786	7.491	0.809	nan	1.707	2.019	1.314	3.448	1.051	0.934	2.346	2.098	1.402	1.048	5.228	1.348	1.291	0.312	2.397	1.333	1.287	0.332	1.922	0.802
606	chr1	159747425	159753043	+	0	NA	promoter-TSS (NM_001319658)	promoter-TSS (NM_001319658)	-502	NM_017823	54935	Hs.425801	NM_017823	ENSG00000158716	DUSP23	DUSP25|LDP-3|MOSP|VHZ	dual specificity phosphatase 23	protein-coding	nan	nan	3.137	0.811	0.943	0.541	0.096	0.331	0.099	0.459	0.237	0.767	1.879	0.407	0.097	0.771	0.816	7.972	3.416	0.880	nan	1.599	0.418	0.936	0.758	0.524	1.170	1.957	2.958	0.710	0.541	1.140	1.983	1.436	1.577	0.552	0.813	0.639	0.545	0.385	1.996	0.372	0.269	0.096	0.767	0.070	0.054	0.821	0.132
4416	chr2	85472567	85487285	+	0	NA	intron (NM_031283, intron 3 of 11)	intron (NM_031283, intron 3 of 11)	39151	NR_136323	102724579	Hs.669216	NR_136323		LOC102724579	-	uncharacterized LOC102724579	ncRNA	nan	1.041	nan	0.274	0.746	0.316	0.355	2.093	0.207	0.159	0.089	0.878	1.064	0.133	0.113	0.850	0.449	1.257	2.491	0.893	0.965	0.990	0.376	0.270	0.339	0.105	0.218	1.120	0.936	0.845	0.527	0.243	0.334	0.148	0.199	2.218	7.572	1.513	0.993	0.584	0.127	0.059	0.103	0.355	0.878	0.052	0.094	0.064	3.451
1855	chr12	16735974	16768483	+	0	NA	intron (NM_001243613, intron 3 of 5)	intron (NM_001243613, intron 3 of 5)	6085	NM_001243611	55885	Hs.504908	NM_018640	ENSG00000048540	LMO3	RBTN3|RBTNL2|RHOM3|Rhom-3	LIM domain only 3	protein-coding	0.885	3.263	0.824	0.784	0.383	0.252	0.469	0.083	0.044	3.489	2.439	0.332	15.188	0.060	0.116	0.286	0.206	4.814	5.936	nan	1.493	7.158	2.610	0.320	0.392	0.204	0.359	2.711	4.119	0.415	0.245	0.234	0.299	1.766	1.051	0.479	0.877	2.406	1.310	2.299	0.085	0.454	0.190	0.469	0.332	0.015	0.065	0.046	0.206
432	chr1	107765643	107807709	+	0	NA	intron (NM_001330665, intron 2 of 6)	intron (NM_001330665, intron 2 of 6)	95985	NM_001113228	22854	Hs.133046	NM_014917	ENSG00000162631	NTNG1	Lmnt1	netrin G1	protein-coding	0.913	nan	nan	0.139	0.576	0.324	0.202	0.100	0.088	0.063	0.085	0.105	0.553	0.039	0.117	0.280	0.194	0.389	0.302	0.304	nan	3.888	1.269	0.223	0.208	2.698	2.954	nan	nan	0.456	0.253	0.201	0.302	0.403	0.289	0.352	nan	0.516	0.518	0.062	0.068	0.084	0.059	0.202	0.105	0.067	0.036	0.118	0.150
4235	chr2	16562157	16569949	+	0	NA	Intergenic	Intergenic	281081	NM_030797	81553	Hs.467769	NM_030797	ENSG00000197872	FAM49A	-	family with sequence similarity 49 member A	protein-coding	0.603	0.434	0.582	0.364	0.223	0.103	0.049	0.039	0.045	0.053	0.158	0.023	0.295	0.083	0.128	0.370	0.272	0.182	0.228	0.241	0.294	0.142	0.063	0.136	0.138	0.148	0.296	0.293	nan	0.341	0.183	4.874	10.092	0.022	0.058	0.194	nan	0.233	0.352	0.607	0.088	0.025	0.010	0.049	0.023			14.110	0.031
5349	chr3	29350125	29416270	+	0	NA	intron (NM_001003792, intron 1 of 13)	intron (NM_001003792, intron 1 of 13)	60394	NM_001177711	27303	Hs.221436	NM_014483	ENSG00000144642	RBMS3	-	RNA binding motif single stranded interacting protein 3	protein-coding	0.552	0.744	0.519	0.081	0.380	0.165	0.083	0.957	0.111	0.100	0.106	0.076	0.279	3.654	0.141	0.313	0.203	1.085	1.777	0.256	0.349	0.102	0.066	0.126	0.117	0.427	0.636	0.245	0.240	nan	1.321	0.154	0.250	0.167	0.214	0.228	0.460	0.380	0.319	0.108	0.059	0.036	0.060	0.083	0.076	0.041	0.059	0.082	0.103
5713	chr3	179369518	179374442	+	0	NA	intron (NM_003940, intron 1 of 20)	AluSx1|SINE|Alu	1047	NM_003940	8975	Hs.175322	NM_003940	ENSG00000058056	USP13	ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding	5.746	3.237	4.363	3.814	2.588	1.609	3.301	2.986	0.588	2.998	1.860	3.648	10.794	1.656	0.083	3.545	3.995	4.843	5.963	6.636	5.722	12.893	4.848	4.053	4.076	3.872	5.241	4.051	7.173	6.578	7.613	1.744	4.203	4.582	4.519	7.875	6.618	2.648	1.567	2.025	3.523	1.273	2.083	3.301	3.648	0.791	1.151	0.950	3.381
5217	chr22	25881121	25898942	+	0	NA	Intergenic	Intergenic	38418	NR_106875	102466198		NR_106875	ENSG00000277872	MIR6817	hsa-mir-6817	microRNA 6817	ncRNA	1.359	nan	2.322	0.138	0.349	0.217	0.470	0.186	0.101	0.053	0.088	0.132	0.385	0.061	0.083	0.548	0.711	0.192	0.300	0.596	0.851	0.643	0.137	0.302	0.278	1.840	2.545	0.451	0.516	3.373	2.823	0.241	0.386	0.916	1.332	2.081	6.413	1.718	1.121	0.052	0.055	0.283	0.232	0.470	0.132	0.516	0.200	0.123	2.052
708	chr1	182987548	183010551	+	0	NA	intron (NM_002293, intron 1 of 27)	intron (NM_002293, intron 1 of 27)	6454	NM_002293	3915	Hs.609663	NM_002293	ENSG00000135862	LAMC1	LAMB2	laminin subunit gamma 1	protein-coding	nan	nan	1.849	0.724	1.169	0.711	2.514	2.873	0.391	0.812	0.367	0.265	2.677	0.967	0.124	1.422	1.969	2.844	5.445	2.007	nan	2.049	0.613	nan	3.368	1.610	2.184	1.620	2.125	1.430	1.456	1.012	2.409	1.414	2.484	1.082	nan	1.106	0.785	0.149	0.755	0.333	1.594	2.514	0.265	0.283	0.626	0.592	0.361
2415	chr13	102973818	102997749	+	0	NA	intron (NM_001321941, intron 1 of 5)	intron (NM_001321941, intron 1 of 5)	-15729	NM_001321936	2259	Hs.508616	NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding	0.863	0.919	0.710	0.721	0.348	0.255	0.718	0.072	0.102	0.073	0.062	0.185	0.770	0.027	0.073	0.663	0.312	0.165	0.285	1.072	1.100	0.248	0.122	0.147	0.120	0.453	nan	0.378	0.510	0.335	0.172	0.133	0.180	2.229	4.610	0.381	nan	0.185	0.264	0.249	0.149	0.482	0.162	0.718	0.185	0.081	0.148	0.017	0.047
3286	chr17	15365944	15374769	+	0	NA	intron (NM_001204477, intron 1 of 3)	intron (NM_001204477, intron 1 of 3)	569	NM_001204477	284040	Hs.164595	NM_173622	ENSG00000239704	CDRT4	-	CMT1A duplicated region transcript 4	protein-coding	1.047	0.456	0.591	0.109	0.249	0.254	0.058	0.489	0.092	0.036	0.039	0.131	0.263	0.013	0.047	0.371	0.320	0.252	nan	0.247	0.334	0.152	0.076	0.178	0.218	0.166	0.362	0.261	0.349	nan	0.138	0.099	0.147	0.010	0.027	0.191	0.374	0.818	0.497	0.006	0.020	0.011	0.018	0.058	0.131		3.225	0.025	0.098
4764	chr2	235948004	235965178	+	0	NA	intron (NM_014521, intron 4 of 5)	intron (NM_014521, intron 4 of 5)	95963	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3 domain binding protein 4	protein-coding	0.948	nan	1.199	0.725	1.045	0.545	1.558	0.317	0.063	0.978	0.521	1.195	2.059	0.081	0.088	0.483	0.522	2.425	6.267	0.536	0.710	0.970	0.275	0.391	0.412	1.662	2.064	1.424	nan	0.790	0.634	0.258	0.255	0.789	1.018	0.307	0.627	1.225	0.626	0.367	0.125	0.106	0.870	1.558	1.195	0.304	1.044	0.047	0.108
1656	chr11	113703150	113720774	+	0	NA	intron (NM_001346260, intron 2 of 22)	intron (NM_001346260, intron 2 of 22)	34330	NM_001346259	57646	Hs.503891	NM_020886	ENSG00000048028	USP28	-	ubiquitin specific peptidase 28	protein-coding	0.588	0.770	0.531	0.170	0.192	0.254	0.167	0.077	0.072	0.071	0.123	0.088	0.335	0.086	0.111	5.626	nan	2.723	2.247	0.561	0.637	0.338	0.154	0.822	0.866	0.386	nan	0.371	0.388	0.323	0.178	3.881	6.568	0.096	0.180	0.230	0.587	0.503	0.424	0.091	0.095	0.027	0.084	0.167	0.088	0.016	0.035	5.155	0.048
856	chr1	212985422	212991877	+	0	NA	3' UTR (NM_001042552, exon 10 of 10)	3' UTR (NM_001042552, exon 10 of 10)	23479	NM_001146170	128387	Hs.530538	NM_001042552	ENSG00000203705	TATDN3	-	TatD DNase domain containing 3	protein-coding	1.193	1.936	2.301	0.481	0.641	0.367	0.317	0.101	0.226	0.567	0.491	0.576	nan	0.134	0.121	0.390	0.343	0.468	0.617	0.994	1.411	nan	0.478	0.514	0.393	0.493	nan	0.835	0.946	0.468	0.168	0.135	0.196	4.593	8.505	0.572	1.595	0.770	0.525	0.026	0.098	1.679	0.025	0.317	0.576	0.070	0.205	0.030	0.372
1664	chr11	115529551	115554045	+	0	NA	Intergenic	Intergenic	63682	NR_135066	101928985	Hs.398155	NR_135066		LOC101928985	-	uncharacterized LOC101928985	ncRNA	0.962	0.737	1.226	0.223	0.789	0.331	0.631	0.034	0.111	0.456	0.239	0.610	2.388	0.097	0.090	0.688	nan	0.364	0.957	3.826	3.779	1.054	0.326	0.095	0.077	2.851	nan	1.294	1.208	0.873	0.711	0.554	0.971	1.572	1.236	0.343	0.637	1.291	0.801	3.936	0.181	0.417	0.584	0.631	0.610	0.564	0.294	0.231	0.122
191	chr1	33113399	33121852	+	0	NA	exon (NM_005610, exon 2 of 12)	exon (NM_005610, exon 2 of 12)	666	NM_001135256	5928	Hs.16003	NM_005610	ENSG00000162521	RBBP4	NURF55|RBAP48|lin-53	RB binding protein 4, chromatin remodeling factor	protein-coding	5.281	nan	4.508	8.737	4.982	2.943	3.818	1.795	0.315	3.453	1.650	8.631	8.961	3.864	0.167	5.984	4.610	5.735	7.505	9.911	9.728	nan	3.468	10.114	10.843	5.322	6.464	5.305	8.209	nan	6.363	5.281	6.829	3.071	4.375	7.535	6.376	3.112	nan	3.999	3.503	0.667	2.850	3.818	8.631	1.524	1.790	1.911	2.341
3211	chr16	87733191	87777437	+	0	NA	intron (NM_017566, intron 7 of 11)	intron (NM_017566, intron 7 of 11)	44284	NM_017566	54758	Hs.123450	NM_017566	ENSG00000104731	KLHDC4	-	kelch domain containing 4	protein-coding	nan	0.466	0.573	0.411	0.593	0.380	0.927	0.075	0.080	0.238	0.157	5.410	0.408	0.073	0.081	0.361	0.496	0.194	0.301	1.632	1.548	0.570	0.205	0.460	0.459	0.248	0.441	2.156	2.603	0.371	0.340	0.180	0.229	0.191	0.348	0.348	0.724	1.164	0.581	0.548	0.851	0.094	0.065	0.927	5.410	0.204	0.749	0.051	0.105
4613	chr2	177357826	177370607	+	0	NA	Intergenic	Intergenic	101564	NR_031648	100302142		NR_031648	ENSG00000283203	MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA	1.085	1.118	0.821	0.305	0.492	0.186	0.261	0.071	0.102	0.197	0.070	0.666	1.209	0.026	0.090	0.505	0.503	0.194	0.335	0.698	0.854	0.476	0.250	0.283	0.293	0.203	0.358	1.055	0.907	0.585	0.400	0.198	0.287	0.632	0.432	0.607	1.538	0.615	0.551	4.588	0.156	0.133	0.055	0.261	0.666	0.083	0.080	0.077	0.174
3612	chr17	79312137	79324509	+	0	NA	Intergenic	CpG	-13849	NM_178520	284186	Hs.364191	NM_178520	ENSG00000185332	TMEM105	-	transmembrane protein 105	protein-coding	5.792	6.720	7.210	2.937	3.319	2.009	8.552	2.503	0.249	0.821	0.278	4.797	8.438	3.343	0.105	10.305	9.470	4.349	6.251	7.058	5.667	3.846	1.379	5.871	5.778	nan	5.036	4.882	6.594	4.112	4.636	4.540	7.867	4.320	4.070	0.567	0.901	nan	0.727	3.692	4.069	1.111	2.419	8.552	4.797	1.783	1.868	3.309	0.179
262	chr1	42920636	42933923	+	0	NA	TTS (NM_001287506)	TTS (NM_001287506)	5114	NM_001077447	79717	Hs.706662	NM_024664	ENSG00000127125	PPCS	-	phosphopantothenoylcysteine synthetase	protein-coding	21.357	2.420	nan	2.833	2.262	1.051	1.517	0.624	0.061	1.448	0.715	3.629	7.026	1.812	0.177	1.786	2.202	1.728	2.832	4.306	4.236	4.017	1.860	3.275	3.538	1.675	nan	nan	6.958	1.509	1.310	2.341	nan	2.051	2.172	1.591	2.105	2.703	1.774	2.249	1.926	0.459	0.496	1.517	3.629	0.469	1.358	1.208	0.270
1944	chr12	52396574	52487841	+	0	NA	intron (NM_001202234, intron 2 of 7)	AluY|SINE|Alu	-2979	NM_173157	3164	Hs.524430	NM_002135	ENSG00000123358	NR4A1	GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3	nuclear receptor subfamily 4 group A member 1	protein-coding	nan	1.212	0.912	0.661	1.318	0.768	0.656	0.332	0.091	0.903	0.539	1.111	1.642	0.429	0.068	nan	3.569	1.452	1.839	2.464	nan	2.609	1.198	1.402	1.470	0.652	nan	1.894	nan	1.145	0.952	1.334	2.013	1.103	1.207	0.674	0.882	2.541	1.399	0.723	1.674	0.197	0.710	0.656	1.111	0.516	1.383	0.746	0.186
5165	chr21	45987978	46003996	+	0	NA	TTS (NM_198687)	TTS (NM_198687)	2381	NM_198687	386672	Hs.567901	NM_198687	ENSG00000215454	KRTAP10-4	KAP10.4|KAP18-4|KRTAP10.4|KRTAP18-4|KRTAP18.4	keratin associated protein 10-4	protein-coding	nan	0.665	5.230	0.374	0.288	0.160	0.403	0.051	0.081	0.309	0.237	0.224	0.883	0.041	0.046	0.262	0.118	0.127	0.267	0.405	0.468	nan	0.321	0.139	0.158	0.131	nan	0.249	0.438	0.890	1.462	0.220	0.229	2.021	1.428	0.120	0.134	2.087	1.277	0.187	0.307	0.304	0.045	0.403	0.224	0.215	2.748	0.049	0.061
6959	chr6	128631038	128642101	+	0	NA	intron (NM_001291983, intron 2 of 18)	intron (NM_001291983, intron 2 of 18)	205250	NM_001291983	5796	Hs.155919	NM_002844	ENSG00000152894	PTPRK	R-PTP-kappa	protein tyrosine phosphatase, receptor type K	protein-coding	1.222	0.890	0.981	0.198	0.409	0.171	0.283	0.095	0.118	0.199	0.149	0.130	0.256	0.030	0.081	0.584	0.344	0.590	0.691	0.479	0.426	2.383	0.772	0.485	0.488	0.942	1.154	0.754	1.009	2.012	1.809	0.149	0.222	4.055	6.498	0.473	0.950	0.398	0.381	0.030	0.077	0.914	0.085	0.283	0.130	0.052	0.028	0.027	0.187
6109	chr4	187605103	187623738	+	0	NA	intron (NM_005245, intron 2 of 26)	intron (NM_005245, intron 2 of 26)	30567	NM_005245	2195	Hs.481371	NM_005245	ENSG00000083857	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding	nan	0.658	nan	0.804	0.167	0.095	0.159	0.085	0.069	0.186	0.134	3.945	1.373	0.105	0.077	0.235	0.382	1.075	3.123	0.643	0.763	0.060	0.032	0.229	0.207	0.079	0.122	1.092	1.107	0.294	0.184	0.140	0.274	0.100	0.117	0.038	0.123	0.082	0.096	0.003	0.024	0.020	0.085	0.159	3.945	0.016	0.570	0.053	0.039
2099	chr12	98477912	98485103	+	0	NA	Intergenic	Intergenic	-92281	NR_036189	100422924		NR_036189	ENSG00000263890	MIR4303	-	microRNA 4303	ncRNA	0.755	0.821	0.700	2.640	0.458	0.313	0.265	0.126	0.135	0.347	0.148	0.842	nan	0.060	0.106	0.444	0.244	0.298	0.324	1.764	1.472	9.966	5.543	0.386	0.450	0.400	nan	7.798	nan	0.451	0.137	0.122	0.156	1.168	0.923	0.260	0.358	4.317	2.293	2.353	2.431	0.121	0.241	0.265	0.842	0.013	0.156	0.057	0.067
2476	chr13	114859903	114866702	+	0	NA	intron (NM_007368, intron 1 of 23)	intron (NM_007368, intron 1 of 23)	-19848	NM_001320822	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding	0.806	nan	0.464	1.766	0.251	0.095	1.172	0.447		0.161	0.048	0.337	2.188	0.079	0.140	0.925	0.958	0.200	0.425	0.730	0.532	0.871	0.283	0.122	0.148	0.020	0.074	0.880	1.128	0.418	0.288	0.640	0.553	0.348	0.237	0.254	0.267	0.151	0.124	8.780	0.525	0.028	0.118	1.172	0.337	0.172	2.670	0.209	0.073
2988	chr15	91352393	91363718	+	0	NA	intron (NM_001287248, intron 21 of 21)	intron (NM_001287248, intron 21 of 21)	-53767	NM_002569	5045	Hs.513153	NM_002569	ENSG00000140564	FURIN	FUR|PACE|PCSK3|SPC1	furin, paired basic amino acid cleaving enzyme	protein-coding	nan	nan	nan	0.202	0.461	0.283	0.520	0.133	0.099	0.502	0.338	1.080	1.502	0.067	0.073	5.012	6.178	1.310	1.008	3.037	3.093	nan	0.174	2.061	2.060	0.470	0.757	0.486	0.719	nan	3.186	4.184	5.497	0.273	0.236	0.734	nan	1.819	0.989	0.269	0.874	0.051	0.313	0.520	1.080	0.537	0.167	2.719	0.381
1921	chr12	42310023	42336854	+	0	NA	Intergenic	L1ME3B|LINE|L1	165447	NR_135040	101927038	Hs.98588	NR_135040	ENSG00000257784	LOC101927038	-	uncharacterized LOC101927038	ncRNA	0.994	nan	0.634	1.620	1.392	0.671	1.712	0.086	0.096	1.169	0.451	3.558	1.185	0.032	0.093	0.452	0.441	0.543	0.375	5.782	5.343	4.707	2.280	0.330	0.320	1.377	1.604	0.986	1.278	0.770	0.729	0.127	0.273	1.756	1.876	0.370	0.750	1.197	0.738	1.513	2.481	0.332	0.950	1.712	3.558	0.094	0.585	0.059	0.079
3217	chr16	88868337	88879612	+	0	NA	intron (NM_030928, intron 9 of 9)	intron (NM_030928, intron 9 of 9)	3788	NM_030928	81620	Hs.122908	NM_030928	ENSG00000167513	CDT1	DUP|RIS2	chromatin licensing and DNA replication factor 1	protein-coding	nan	2.048	3.747	4.044	4.428	2.352	4.573	0.830	0.301	1.052	0.610	4.273	5.311	3.187	0.118	2.787	3.058	2.231	3.350	2.956	2.659	3.399	1.468	4.963	4.521	1.373	1.897	3.382	5.045	3.816	4.673	1.565	2.614	2.255	2.123	2.819	3.335	2.282	1.190	1.705	2.243	0.607	1.215	4.573	4.273	0.830	2.721	1.075	1.138
6181	chr5	14137983	14178839	+	0	NA	intron (NM_007118, intron 1 of 56)	AluSc|SINE|Alu	14600	NM_007118	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding	nan	nan	nan	2.499	0.893	0.456	1.416	2.564	0.473	0.824	0.573	1.135	nan	0.845	0.121	1.898	2.020	1.898	2.659	2.113	1.778	1.255	0.453	0.852	0.828	nan	3.748	3.224	5.445	3.957	4.368	2.026	3.780	1.356	1.785	1.044	nan	1.815	1.142	0.366	2.303	0.329	0.553	1.416	1.135	0.942	1.300	3.515	0.601
4923	chr20	31559122	31574634	+	0	NA	Intergenic	AluSz6|SINE|Alu	25361	NM_080675	140732	Hs.375186	NM_080675	ENSG00000167098	SUN5	SPAG4L|SPGF16|TSARG4|dJ726C3.1	Sad1 and UNC84 domain containing 5	protein-coding	1.614	1.034	0.776	0.210	0.229	0.094	0.197	0.173	0.155	0.118	0.117	0.190	0.468	0.125	0.107	0.608	0.581	0.271	0.434	0.596	nan	0.450	0.226	0.345	0.321	0.773	1.145	0.303	0.430	6.882	5.378	0.348	0.371	0.135	0.186	2.168	nan	0.249	0.243	0.086	0.141	0.025	0.097	0.197	0.190	0.183	0.071	0.051	1.617
8267	chr9	126864412	126876430	+	0	NA	Intergenic	Intergenic	96532	NM_004789	9355	Hs.696425	NM_004789	ENSG00000106689	LHX2	LH2|hLhx2	LIM homeobox 2	protein-coding	nan	nan	0.590	1.295	0.326	0.160	0.169	0.087	0.013	0.166	0.090	0.479	nan	0.027	0.058	0.212	0.316	0.082	0.129	1.149	1.118	0.613	0.196	0.178	0.216	0.284	nan	7.294	5.342	1.143	0.800	0.151	0.212	0.158	0.205	0.269	0.291	nan	0.898	0.955	0.140	0.040	0.040	0.169	0.479	0.227	1.037	0.033	0.031
1901	chr12	31494410	31525107	+	0	NA	Intergenic	AluSx|SINE|Alu	-30599	NM_001135812	58516	Hs.505154	NM_021238	ENSG00000139146	FAM60A	C12orf14|L4|TERA	family with sequence similarity 60 member A	protein-coding	1.872	nan	1.712	3.082	1.759	0.929	0.838	0.066	0.100	1.235	0.513	1.329	1.299	0.124	0.143	0.544	0.845	0.306	0.626	1.690	1.642	5.025	1.748	0.467	0.546	0.497	0.716	1.512	1.239	1.409	1.266	0.530	0.907	7.753	7.208	0.690	1.436	1.934	1.093	2.356	1.231	2.399	1.766	0.838	1.329	0.618	2.460	0.557	0.246
6966	chr6	131970141	131977287	+	0	NA	non-coding (NR_133007, exon 4 of 24)	non-coding (NR_133007, exon 4 of 24)	15339	NR_133007	5169	Hs.486489	NM_005021	ENSG00000154269	ENPP3	B10|CD203c|NPP3|PD-IBETA|PDNP3	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	0.630	1.158	1.732	0.499	0.664	0.420	0.497	0.073	0.047	0.876	0.274	1.169	0.770	0.076	0.136	0.401	0.225	0.322	0.285	0.368	0.555	9.889	3.187	0.239	0.322	0.208	0.339	0.754	0.796	0.610	0.282	0.089	0.287	2.180	1.942	0.243	nan	1.284	0.748	0.039	0.050	0.627	0.011	0.497	1.169	0.027	0.923	0.014	0.070
7409	chr7	101946227	101954322	+	0	NA	intron (NM_020979, intron 3 of 6)	intron (NM_020979, intron 3 of 6)	13905	NR_036245	100422858		NR_036245	ENSG00000264675	MIR4285	-	microRNA 4285	ncRNA	nan	0.638	2.512	0.366	0.867	0.376	0.459	0.212	0.139	0.173	0.151	0.252	0.360	0.121	0.119	5.104	6.297	1.488	2.153	0.359	0.419	0.308	0.238	1.209	1.208	0.355	0.823	0.493	1.053	2.153	1.585	7.638	8.362	0.551	0.813	1.244	nan	0.772	0.690	0.053	0.088	0.170	0.693	0.459	0.252	0.534	1.254	7.991	0.916
359	chr1	68176041	68191529	+	0	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	32925	NM_001924	1647	Hs.80409	NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding	2.121	1.214	nan	0.750	0.817	0.476	2.675	1.586	0.280	1.494	0.712	0.903	1.926	0.084	0.119	0.581	0.609	5.425	3.244	1.113	1.068	5.126	1.986	0.282	0.252	nan	nan	2.830	nan	0.465	0.353	0.251	0.498	1.817	1.719	0.925	3.200	2.944	1.568	1.204	1.508	0.604	0.286	2.675	0.903	0.214	1.063	0.186	0.655
7502	chr7	137665627	137687922	+	0	NA	intron (NM_194071, intron 1 of 11)	intron (NM_194071, intron 1 of 11)	10073	NM_194071	64764	Hs.490273	NM_194071	ENSG00000182158	CREB3L2	BBF2H7	cAMP responsive element binding protein 3 like 2	protein-coding	nan	nan	nan	0.192	0.554	0.206	0.395	0.879	0.167	1.125	0.505	0.102	1.234	0.379	0.109	1.298	2.108	0.839	1.263	0.704	0.593	nan	1.300	2.674	2.595	1.251	nan	1.287	1.418	nan	1.776	0.415	0.626	1.412	0.959	0.669	1.437	1.872	nan	0.575	3.141	0.205	0.464	0.395	0.102	0.208	1.014	0.094	0.398
1229	chr10	121088707	121104644	+	0	NA	intron (NM_005308, intron 2 of 15)	intron (NM_005308, intron 2 of 15)	-40809	NR_039829	100616398		NR_039829	ENSG00000265719	MIR4681	-	microRNA 4681	ncRNA	nan	0.719	2.598	0.320	0.371	0.154	0.217	0.179	0.152	0.117	0.125	0.081	0.372	0.060	0.073	0.345	0.482	0.273	0.412	1.025	1.114	0.787	0.284	0.295	0.339	0.285	0.551	2.253	2.178	1.349	1.289	0.268	0.349	0.145	0.222	1.395	5.617	0.260	0.341	0.400	0.188	0.012	0.123	0.217	0.081	0.104	1.117	0.112	1.862
1001	chr10	4692730	4770974	+	0	NA	Intergenic	Intergenic	-11590	NR_024475	100216001	Hs.634869	NR_024475	ENSG00000231298	LINC00704	-	long intergenic non-protein coding RNA 704	ncRNA	0.384	0.763	0.735	0.170	0.321	0.175	0.334	0.953	0.201	0.127	0.075	0.265	0.423	3.136	0.164	0.403	0.289	1.897	5.447	0.278	0.340	0.268	0.156	0.162	0.190	0.523	0.789	0.271	0.334	0.160	0.062	0.176	0.264	0.053	0.111	0.110	0.189	0.354	0.330	0.011	0.087	0.011	0.016	0.334	0.265	0.067	0.052	0.144	0.047
2608	chr14	57168918	57178373	+	0	NA	Intergenic	AluJb|SINE|Alu	98736	NM_172337	5015	Hs.288655	NM_021728	ENSG00000165588	OTX2	CPHD6|MCOPS5	orthodenticle homeobox 2	protein-coding	nan	nan	2.022	0.139	0.645	0.357	0.407	0.109		0.116	0.099	0.490	0.385	0.057	0.141	0.236	0.261	14.753	4.594	0.425	0.551	0.836	0.325	0.681	0.918	0.174	0.240	0.369	0.418	0.972	0.461	0.251	0.525	0.173	0.301	1.651	3.645	nan	0.636	0.049	0.178	0.081	0.211	0.407	0.490	0.051	0.032	0.120	0.872
2614	chr14	57810669	57863773	+	0	NA	Intergenic	L1PA7|LINE|L1	-20050	NM_001011713	122830	Hs.165465	NM_001011713	ENSG00000139977	NAA30	C14orf35|MAK3|Mak3p|NAT12|NAT12P	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	nan	nan	3.190	0.596	0.480	0.251	0.601	0.214	0.108	0.362	0.245	0.477	1.176	0.250	0.135	0.547	0.502	0.463	0.774	0.860	0.894	1.107	0.350	1.344	1.268	0.375	0.588	0.722	1.024	2.061	1.984	0.464	0.775	0.835	1.121	3.344	5.297	nan	0.720	0.186	0.512	0.139	0.406	0.601	0.477	0.317	0.550	0.207	2.533
3694	chr18	24125209	24133545	+	0	NA	promoter-TSS (NM_001142730)	promoter-TSS (NM_001142730)	22	NM_001136205	284252	Hs.526630	NM_198991	ENSG00000134504	KCTD1	C18orf5|SENS	potassium channel tetramerization domain containing 1	protein-coding	1.578	3.289	6.528	1.653	1.859	0.980	2.712	0.462	0.058	1.149	0.630	1.996	6.752	0.468	0.029	2.926	4.649	7.349	nan	4.162	3.287	0.406	0.232	10.114	9.554	0.809	1.089	1.729	3.169	0.950	0.853	3.104	6.404	0.874	0.481	0.719	1.035	2.452	1.633	0.753	0.727	0.127	0.793	2.712	1.996	0.478	0.596	2.988	0.131
225	chr1	38267359	38278644	+	0	NA	promoter-TSS (NM_001142726)	promoter-TSS (NM_001142726)	-472	NM_198446	127687	Hs.532749	NM_198446	ENSG00000197982	C1orf122	ALAESM	chromosome 1 open reading frame 122	protein-coding	2.455	nan	2.367	4.156	1.317	0.686	1.402	1.090	0.155	1.196	0.601	2.717	3.337	1.949	0.205	1.324	1.615	1.263	2.165	2.759	2.678	nan	0.640	2.112	2.163	1.658	2.485	10.664	10.175	nan	2.070	1.883	3.570	0.639	0.624	1.495	2.066	1.417	nan	0.990	1.081	0.143	0.683	1.402	2.717	0.431	1.035	1.018	0.692
142	chr1	24642998	24652625	+	0	NA	intron (NM_001195010, intron 1 of 15)	intron (NM_001195010, intron 1 of 15)	-1719	NM_021180	57822	Hs.657920	NM_021180	ENSG00000158055	GRHL3	SOM|TFCP2L4|VWS2	grainyhead like transcription factor 3	protein-coding	1.007	1.528	nan	0.955	0.747	0.267	1.118	1.674	0.118	0.036	0.087	0.462	2.495	0.045	0.104	0.439	0.491	2.330	9.400	1.215	1.239	0.729	0.140	0.705	0.860	0.215	0.429	2.702	3.136	0.308	0.230	0.606	0.704	0.451	0.407	0.299	0.456	0.372	0.395	0.924	0.939	0.040	0.116	1.118	0.462	0.151		0.206	0.064
5392	chr3	65835905	65870290	+	0	NA	intron (NM_015520, intron 1 of 24)	intron (NM_015520, intron 1 of 24)	-26394	NR_046575	100873983	Hs.663889	NR_046575	ENSG00000240175	MAGI1-AS1	-	MAGI1 antisense RNA 1	ncRNA	0.777	nan	0.712	1.729	0.493	0.275	0.194	0.089	0.037	0.437	0.142	0.460	0.738	0.057	0.068	0.290	0.259	0.238	0.393	0.534	0.503	1.509	0.399	0.153	0.135	0.082	0.175	3.015	2.511	0.684	0.557	0.180	0.260	0.431	0.515	0.413	nan	0.670	0.534	0.011	0.098	0.061	0.195	0.194	0.460	0.083	1.107	0.095	0.295
4491	chr2	129135848	129144352	+	0	NA	Intergenic	Intergenic	-63929	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.927	nan	nan	0.207	0.311	0.207	1.769	0.151	0.040	0.334	0.303	0.167	1.032	0.015	0.068	0.492	0.543	0.223	0.390	1.601	1.277	8.809	3.241	0.320	0.392	0.259	0.385	1.535	2.115	0.491	0.231	0.426	0.248	0.725	0.814	0.850	1.033	0.748	0.696	0.412	0.232	0.033	0.103	1.769	0.167	0.113	0.084	0.035	0.389
8190	chr9	91001795	91004989	+	0	NA	promoter-TSS (NM_006717)	promoter-TSS (NM_006717)	95	NM_006717	10927	Hs.146804	NM_006717	ENSG00000106723	SPIN1	SPIN|TDRD24	spindlin 1	protein-coding	5.212	nan	7.126	7.882	5.135	3.060	5.198	1.881	0.152	2.324	1.579	9.370	11.517	5.307	0.165	5.106	5.712	12.955	15.313	12.643	10.236	6.309	2.488	13.153	12.479	1.392	1.691	8.080	13.768	3.779	4.428	2.682	6.145	7.470	6.048	5.785	3.125	2.344	1.132	3.279	3.524	2.264	2.711	5.198	9.370	0.971	4.252	2.328	1.576
7202	chr7	24002344	24011376	+	0	NA	Intergenic	Intergenic	256915	NM_001260504	56164	Hs.309767	NM_031414	ENSG00000196335	STK31	SGK396|TDRD8	serine/threonine kinase 31	protein-coding	1.037	1.050	1.002	0.156	0.413	0.230	1.922	0.058	0.018	0.178	0.180	0.235	0.378	0.072	0.140	0.390	0.225	0.417	nan	0.413	0.538	9.290	2.291	0.337	0.231	0.273	0.455	0.353	0.304	0.303	0.231	0.112	0.220	1.649	2.606	0.180	nan	0.527	0.610	0.130	0.093	0.170	0.685	1.922	0.235	0.043	0.068	0.033	0.095
3170	chr16	72457581	72466582	+	0	NA	intron (NR_126330, intron 6 of 13)	intron (NR_126330, intron 6 of 13)	236827	NR_126330	101927957	Hs.637253	NR_126330	ENSG00000261008	LINC01572	-	long intergenic non-protein coding RNA 1572	ncRNA	1.554	0.616	nan	0.117	0.274	0.234	0.099	0.033	0.035	0.087	0.092	0.519	7.124	0.048	0.079	7.711	9.699	0.656	0.488	0.217	0.304	0.158	0.061	24.617	25.526	0.223	0.418	0.170	0.263	0.458	0.220	0.689	1.712	0.348	0.303	0.099	0.216	1.167	0.806	0.032	0.019	0.021	0.026	0.099	0.519	0.237	0.011	1.027	0.069
5795	chr3	194391935	194393969	+	0	NA	5' UTR (NM_018385, exon 1 of 14)	5' UTR (NM_018385, exon 1 of 14)	254	NM_018385	55341	Hs.744061	NM_018385	ENSG00000041802	LSG1	-	large 60S subunit nuclear export GTPase 1	protein-coding	6.316	4.337	3.378	11.991	8.155	3.813	3.919	6.141	0.414	3.303	1.767	4.229	15.549	3.784	0.103	8.281	6.770	8.836	13.413	9.073	9.584	14.877	14.305	20.508	21.692	5.074	7.076	12.923	17.562	13.328	12.032	9.355	10.670	7.165	8.867	5.277	6.241	5.178	3.247	4.943	3.876	0.970	3.225	3.919	4.229	1.735	1.006	1.560	2.581
5288	chr22	43187218	43197041	+	0	NA	TTS (NM_014570)	TTS (NM_014570)	61279	NM_001142293	26286	Hs.685225	NM_014570	ENSG00000242247	ARFGAP3	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein-coding	1.154	nan	0.976	0.836	0.420	0.192	0.679	0.191	0.180	0.188	0.135	0.305	0.361	0.103	0.104	0.726	0.802	0.244	0.420	0.671	0.682	1.442	0.631	0.311	0.197	0.639	nan	2.976	2.788	nan	1.386	0.287	0.208	0.679	0.782	0.460	0.820	1.245	0.546	0.088	0.196	0.137	0.173	0.679	0.305	2.705	2.622	0.061	0.189
3923	chr19	280330	291499	+	0	NA	intron (NM_003712, intron 3 of 5)	AluSx|SINE|Alu	5255	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PLPP2	LPP2|PAP-2c|PAP2-g|PPAP2C	phospholipid phosphatase 2	protein-coding	0.606	2.075	3.176	0.872	5.015	2.687	0.458	0.087	0.145	1.665	0.664	2.105	3.180	0.585	0.087	4.184	5.397	2.762	3.867	2.519	1.885	1.895	0.718	4.242	4.478	0.263	0.451	3.686	nan	0.417	0.193	1.512	2.295	1.256	1.522	0.149	0.315	2.174	1.220	2.803	2.324	0.136	0.043	0.458	2.105	0.512	0.145	0.735	0.033
3135	chr16	49574981	49603773	+	0	NA	intron (NM_001330533, intron 3 of 5)	MIR|SINE|MIR	-36881	NR_144553	1596	Hs.684517	NR_144553		ADAM3B	CYRN2	ADAM metallopeptidase domain 3B (pseudogene)	pseudo	1.074	1.849	1.109	0.076	0.390	0.167	1.617	0.065	0.045	0.037	0.038	0.093	0.175	0.034	0.064	0.332	0.379	0.064	0.080	0.914	0.969	3.259	0.859	0.094	0.118	0.940	1.156	0.486	0.687	5.362	6.347	0.209	0.362	1.189	1.061	0.805	1.226	0.932	0.623	0.014	0.623	0.591	0.173	1.617	0.093	2.209	0.092	0.141	0.407
3730	chr18	32617793	32623983	+	0	NA	promoter-TSS (NR_046177)	promoter-TSS (NR_046177)	-436	NM_014268	10982	Hs.532824	NM_014268	ENSG00000166974	MAPRE2	CSCSC2|EB1|EB2|RP1	microtubule associated protein RP/EB family member 2	protein-coding	nan	2.289	2.225	3.250	3.545	1.694	3.192	0.542	0.068	1.046	0.661	3.205	5.254	0.589	0.110	3.133	3.779	1.483	2.765	7.402	6.207	9.570	5.128	1.027	1.256	1.496	1.903	nan	10.365	2.616	2.871	0.605	1.678	4.230	3.951	1.924	2.392	6.978	4.043	1.237	1.123	1.121	0.808	3.192	3.205	0.644	2.446	0.672	0.444
3665	chr18	10723226	10729717	+	0	NA	intron (NM_022068, intron 33 of 51)	CpG	33176	NR_106846	102466735		NR_106846	ENSG00000274838	MIR6788	hsa-mir-6788	microRNA 6788	ncRNA	0.971	0.631	0.562	1.500	0.139	0.123	0.078	0.082	0.049	1.446	0.836	0.092	2.186	0.034	0.137	1.144	2.021	0.114	0.206	1.662	1.308	15.061	7.078	0.154	0.154	0.280	0.455	0.225	0.289	0.343	0.302	0.291	0.825	0.356	0.378	0.098	0.130	4.299	2.497	1.082	0.204	0.029	0.160	0.078	0.092	0.567	0.016	0.152	
4356	chr2	53782745	53807176	+	0	NA	Intergenic	L1ME3|LINE|L1	-199960	NM_001346127	494143	Hs.585944	NM_001008708	ENSG00000143942	CHAC2	-	ChaC cation transport regulator homolog 2	protein-coding	6.765	4.052	7.351	0.196	0.198	0.137	0.782	0.141	0.086	0.124	0.128	0.133	0.395	0.049	0.110	0.384	0.229	0.180	0.257	0.506	0.567	0.423	0.174	0.444	0.455	0.840	1.237	0.479	0.459	0.940	0.682	0.202	0.349	14.529	15.818	2.487	5.722	0.575	0.497	0.106	0.094	2.650	0.301	0.782	0.133	0.385	0.321	0.178	2.096
7054	chr6	154701006	154710625	+	0	NA	Intergenic	Intergenic	-27915	NM_001130700	26034	Hs.146100	NM_015553	ENSG00000074706	IPCEF1	PIP3-E	interaction protein for cytohesin exchange factors 1	protein-coding	nan	0.887	0.626	0.423	0.323	0.098	0.346	0.763	0.167	0.114	0.086	0.199	0.353	0.042	0.163	1.315	0.864	11.506	10.216	0.346	nan	0.678	0.421	1.148	1.591	0.077	0.134	0.332	0.300	0.452	0.220	0.297	0.369	0.093	0.095	0.122	nan	0.341	0.354	0.030	0.055	0.039	0.033	0.346	0.199	0.020	0.122		0.102
4343	chr2	51040929	51095048	+	0	NA	intron (NM_001135659, intron 5 of 23)	intron (NM_001135659, intron 5 of 23)	-144588	NR_130470	103504737		NR_130470	ENSG00000216191	MIR8485	hsa-mir-8485	microRNA 8485	ncRNA	1.236	nan	1.298	0.498	0.771	0.380	0.592	0.089	0.080	0.356	0.292	0.501	0.908	0.028	0.099	0.278	0.209	0.236	0.364	0.710	0.867	0.841	0.269	0.346	0.346	5.308	5.791	1.146	1.443	1.672	1.064	0.107	0.189	1.550	2.124	1.112	3.132	0.418	0.361	0.559	0.915	0.567	0.172	0.592	0.501	0.639	0.152	0.042	0.742
7041	chr6	149634781	149640983	+	0	NA	intron (NM_001292035, intron 2 of 6)	intron (NM_001292035, intron 2 of 6)	-1181	NM_001292034	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	nan	2.760	nan	4.150	2.107	1.110	4.490	3.153	0.258	1.226	0.718	3.653	6.400	3.922	0.153	2.985	4.000	4.033	5.006	6.296	4.452	7.306	3.005	7.069	6.560	1.166	1.473	3.145	4.847	9.498	11.392	1.380	3.194	3.321	2.504	3.964	3.996	1.157	0.665	1.375	3.588	1.219	2.171	4.490	3.653	1.124	2.412	1.073	1.979
659	chr1	171105852	171122174	+	0	NA	intron (NR_002601, intron 1 of 6)	MLT1J|LTR|ERVL-MaLR	7134	NR_002601	388714	Hs.448988	NR_002601	ENSG00000117507	FMO6P	FMO6	flavin containing monooxygenase 6 pseudogene	pseudo	nan	nan	nan	0.509	2.316	1.161	0.642	3.392	0.406	0.220	0.211	1.016	1.128	0.064	0.123	0.487	0.324	0.801	0.950	nan	3.846	0.658	0.301	0.269	0.289	0.236	0.306	1.667	1.983	0.616	0.433	0.492	1.100	1.089	0.629	1.214	nan	1.477	0.856	4.365	2.012	0.172	0.054	0.642	1.016	0.030	0.038	0.267	1.220
7978	chr8	143018316	143028146	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	56426	NR_130468	100616374		NR_130468	ENSG00000265612	MIR4539	-	microRNA 4539	ncRNA	1.229	0.683	nan	0.124	0.554	0.235	0.381	0.062	0.049	0.094	0.035	0.688	0.777	0.022	0.056	0.171	0.207	0.096	0.188	nan	2.218	nan	0.049	0.104	0.152	0.601	0.965	0.349	0.568	0.724	0.697	0.507	0.334	0.200	0.176	0.271	0.464	0.265	0.313	6.162	4.434		0.097	0.381	0.688	0.436	0.103	0.091	0.076
2774	chr14	101353118	101378626	+	0	NA	intron (NR_024149, intron 2 of 3)	intron (NR_024149, intron 2 of 3)	4765	NR_024149	79104	Hs.655789	NR_024149	ENSG00000225746	MEG8	Bsr|Irm|LINC00024|NCRNA00024|Rian	maternally expressed 8 (non-protein coding)	ncRNA	1.177	1.248	0.498	0.061	2.712	1.324	2.226	0.110	0.063	0.143	0.109	0.432	2.371	0.069	0.098	0.192	0.072	0.136	0.192	1.200	1.250	0.866	0.295	0.058	0.043	0.144	0.283	1.330	1.869	1.533	1.177	0.154	0.142	0.381	0.370	0.166	0.210	0.693	0.420	1.177	0.263	0.045	0.271	2.226	0.432	0.497	1.769	0.023	0.014
6017	chr4	130152798	130172149	+	0	NA	Intergenic	MIRb|SINE|MIR	145191	NM_001099783	132321	Hs.567679	NM_173487	ENSG00000151470	C4orf33	-	chromosome 4 open reading frame 33	protein-coding	nan	nan	0.615	3.677	0.340	0.174	0.183	0.081	0.033	0.057	0.093	0.383	0.883	0.084	0.060	0.194	0.133	0.140	0.283	0.423	0.826	0.761	0.253	0.122	0.122	0.155	0.173	0.802	2.912	0.320	0.142	0.164	0.261	0.625	0.575	0.316	nan	0.533	0.348	0.087	0.143	0.344	0.085	0.183	0.383	0.015	0.813	0.030	0.105
6716	chr6	33587403	33602236	+	0	NA	intron (NM_002224, intron 1 of 57)	AluSp|SINE|Alu	5663	NM_002224	3710	Hs.65758	NM_002224	ENSG00000096433	ITPR3	IP3R|IP3R3	inositol 1,4,5-trisphosphate receptor type 3	protein-coding	nan	2.170	nan	0.878	2.402	1.126	0.987	0.570	0.113	0.510	0.579	5.222	4.129	1.103	0.133	0.300	0.594	2.031	nan	nan	4.125	2.247	0.804	0.330	0.400	0.735	1.326	3.733	4.382	0.882	0.684	0.270	0.349	1.574	1.656	0.829	1.299	1.527	0.720	2.876	2.111	0.641	0.384	0.987	5.222	0.281	0.265	0.068	0.326
6815	chr6	53475605	53493725	+	0	NA	Intergenic	MER21B|LTR|ERVL	-8513	NR_125841	101927171	Hs.334005	NR_125841	ENSG00000235899	LINC01564	TCONS_00011314|XLOC_005327	long intergenic non-protein coding RNA 1564	ncRNA	1.267	1.691	nan	0.929	0.234	0.129	0.528	0.579	0.062	0.278	0.177	0.363	0.831	0.064	0.113	0.944	0.907	0.728	1.233	0.398	0.468	2.207	0.248	1.991	1.896	0.278	0.486	3.206	2.832	0.464	0.168	0.606	0.945	2.839	4.384	0.357	0.826	2.113	0.935	0.082	0.093	0.172	0.118	0.528	0.363	0.134	1.584	1.019	0.184
3372	chr17	35060454	35090141	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	117272	NM_024864	79922	Hs.194864	NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding	nan	1.372	0.666	0.568	7.743	3.880	0.940	0.118	0.081	0.166	0.152	1.125	1.320	0.087	0.105	0.612	0.712	0.144	0.231	nan	1.392	2.255	0.842	0.226	0.241	0.223	0.432	1.889	2.056	nan	0.517	0.690	1.206	0.848	0.910	0.484	0.827	1.859	1.006	0.700	0.500	0.357	0.094	0.940	1.125	0.218	0.323	1.396	0.262
1485	chr11	67387176	67399892	+	0	NA	Intergenic	HERV9-int|LTR|ERV1	3874	NM_001243750	254552	Hs.433329	NM_181843	ENSG00000167799	NUDT8	-	nudix hydrolase 8	protein-coding	nan	1.103	1.060	0.855	0.521	0.366	0.465	0.176	0.179	0.222	0.062	0.339	2.540	0.492	0.112	1.202	1.521	1.524	2.141	1.716	1.330	1.688	0.534	1.564	1.654	0.402	0.797	2.029	2.813	0.604	0.587	1.251	1.870	0.304	0.292	0.565	0.806	0.467	0.366	0.333	0.698	0.060	0.100	0.465	0.339	0.130	3.304	0.898	0.116
128	chr1	21344611	21350354	+	0	NA	intron (NM_001198803, intron 4 of 12)	intron (NM_001198803, intron 4 of 12)	-32557	NR_031657	100302155		NR_031657	ENSG00000221808	MIR1256	MIRN1256|hsa-mir-1256	microRNA 1256	ncRNA	1.917	2.819	nan	5.609	3.749	2.226	1.298	2.943	0.197	3.110	1.251	1.046	2.463	0.229	0.135	0.460	0.785	2.248	6.724	2.845	3.250	5.142	5.221	7.301	7.706	2.641	2.913	12.230	17.448	1.234	0.855	0.745	0.782	3.166	6.287	1.416	3.658	2.644	1.207	2.234	2.544	0.590	1.144	1.298	1.046	0.557	2.842	0.653	0.952
6592	chr6	5199314	5219987	+	0	NA	intron (NM_001164840, intron 2 of 2)	intron (NM_001164840, intron 2 of 2)	51533	NM_001164840	57128	Hs.387755	NM_020408	ENSG00000214113	LYRM4	C6orf149|CGI-203|COXPD19|ISD11	LYR motif containing 4	protein-coding	1.446	0.969	1.205	0.719	0.337	0.224	0.262	0.646	0.122	0.282	0.206	0.516	0.518	0.079	0.101	0.462	0.545	1.687	1.045	0.597	0.530	0.758	0.241	0.394	0.411	0.825	1.219	0.831	0.882	1.347	1.234	0.325	0.602	0.183	0.265	1.940	4.968	0.744	0.634	0.059	0.265	0.018	0.092	0.262	0.516	0.128	0.055	0.153	1.273
278	chr1	44454020	44466474	+	0	NA	intron (NM_152499, intron 5 of 8)	AluY|SINE|Alu	2967	NM_152499	149473	Hs.632394	NM_152499	ENSG00000159214	CCDC24	-	coiled-coil domain containing 24	protein-coding	nan	1.897	nan	2.352	1.235	0.465	0.662	0.454	0.039	0.263	0.275	1.141	3.420	0.738	0.115	0.880	1.645	0.744	1.114	1.955	1.898	2.936	0.965	1.411	1.322	0.996	nan	nan	12.555	1.027	0.853	1.082	nan	0.816	0.451	0.674	1.238	2.543	1.270	1.678	1.812	0.099	0.205	0.662	1.141	0.346	0.830	0.667	0.412
5809	chr3	196886699	196914723	+	0	NA	intron (NM_001098424, intron 5 of 25)	AluSz6|SINE|Alu	10291	NM_001204388	1739	Hs.292549	NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs large MAGUK scaffold protein 1	protein-coding	nan	1.196	0.754	0.586	0.622	0.281	0.237	0.502	0.112	0.376	0.355	0.405	nan	0.047	0.088	0.953	0.500	1.348	1.476	1.733	1.945	2.520	1.310	14.266	14.534	0.846	1.018	1.429	1.947	1.021	0.561	1.185	1.835	0.165	0.199	0.604	1.180	1.099	0.743	0.248	0.136	0.027	0.120	0.237	0.405	0.025	0.033	1.750	0.220
2626	chr14	59258914	59283764	+	0	NA	Intergenic	AluJb|SINE|Alu	-23667	NR_110547	102723742	Hs.232734	NR_110547	ENSG00000258583	LINC01500	-	long intergenic non-protein coding RNA 1500	ncRNA	nan	nan	0.918	0.471	0.205	0.124	0.865	0.716	0.215	0.179	0.172	0.147	0.281	0.051	0.149	0.342	0.254	0.243	0.610	0.390	0.444	1.332	0.610	nan	0.345	0.395	0.624	0.664	nan	1.184	0.667	0.198	0.214	1.464	1.288	0.355	1.101	0.485	0.333	5.218	0.271	0.551	0.822	0.865	0.147	0.070	0.029	0.068	0.547
5760	chr3	188689456	188700314	+	0	NA	Intergenic	L2a|LINE|L2	-29457	NR_046873	100874043	Hs.616287	NR_046873	ENSG00000234076	TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA	1.667	2.802	0.903	0.204	6.136	2.967	0.354	0.303	0.118	0.100	0.283	1.035	3.540	0.040	0.075	0.270	0.111	0.373	0.829	0.400	0.497	0.249	0.045	0.349	0.353	3.117	3.783	0.560	0.350	0.543	0.250	0.132	0.208	1.443	0.845	0.199	0.170	3.224	1.802	7.293	0.215	0.096	0.081	0.354	1.035	0.916	0.747		0.057
7361	chr7	82176021	82205177	+	0	NA	Intergenic	Intergenic	-117477	NM_001302890	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding	1.504	1.087	2.335	0.802	2.085	1.066	0.539	0.177	0.116	1.035	0.720	2.230	0.795	0.146	0.206	0.648	0.732	0.390	0.526	2.292	3.234	3.784	2.651	0.302	0.309	2.463	2.697	1.782	2.647	4.137	3.126	0.147	0.298	2.803	2.534	1.751	nan	2.862	1.849	0.331	0.394	0.539	0.139	0.539	2.230	0.207	0.609	0.071	0.651
7967	chr8	142044273	142055420	+	0	NA	Intergenic	AluJb|SINE|Alu	-38434	NM_001316342	5747	Hs.395482	NM_005607	ENSG00000169398	PTK2	FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK	protein tyrosine kinase 2	protein-coding	2.632	1.896	nan	2.952	1.225	0.576	0.599	0.535	0.052	0.112	0.112	1.491	3.869	0.106	0.089	0.417	0.607	0.324	0.705	nan	2.401	nan	0.543	0.658	0.762	0.501	0.961	8.806	8.974	1.411	1.277	0.428	0.644	0.907	1.050	0.440	0.692	1.566	0.882	2.102	0.625	0.212	0.220	0.599	1.491	0.307	0.510	0.213	0.158
2712	chr14	81420784	81443808	+	0	NA	intron (NM_001018036, intron 1 of 8)	intron (NM_001018036, intron 1 of 8)	10427	NM_000369	7253	Hs.160411	NM_000369	ENSG00000165409	TSHR	CHNG1|LGR3|hTSHR-I	thyroid stimulating hormone receptor	protein-coding	nan	0.774	1.638	0.142	1.224	0.655	0.290	2.037	0.293	0.265	0.243	0.140	0.675	0.099	0.113	0.293	0.337	0.240	0.376	1.266	1.220	0.191	0.071	0.586	0.572	0.887	1.457	0.440	0.479	2.822	2.349	0.156	0.259	4.374	6.239	0.715	1.473	2.182	1.336	0.387	0.298	1.824	0.180	0.290	0.140	1.276	0.096	0.047	0.257
1426	chr11	58340525	58352093	+	0	NA	promoter-TSS (NM_001143995)	promoter-TSS (NM_001143995)	-278	NR_024091	386607	Hs.524920	NM_170768		ZFP91-CNTF	-	ZFP91-CNTF readthrough (NMD candidate)	ncRNA	2.964	2.745	2.767	4.149	4.115	2.806	2.248	3.592	0.222	2.064	0.979	2.907	7.417	3.045	0.130	4.983	4.977	4.808	7.115	7.588	7.184	5.781	4.333	9.943	10.769	4.377	5.246	5.238	8.512	6.182	5.669	3.758	5.558	5.772	7.711	3.968	3.867	3.331	1.775	3.552	3.015	1.133	1.678	2.248	2.907	0.525	1.203	2.109	1.367
1562	chr11	86194553	86201745	+	0	NA	intron (NM_001014811, intron 6 of 13)	intron (NM_001014811, intron 6 of 13)	112371	NM_021827	60494	Hs.144913	NM_021827	ENSG00000149201	CCDC81	-	coiled-coil domain containing 81	protein-coding	1.156	0.714	1.087	0.419	0.485	0.239	0.603	1.328	0.090	0.088	0.115	0.066	0.516	0.074	0.097	2.621	3.165	0.730	2.020	0.462	0.594	0.779	0.159	0.875	0.782	1.273	1.596	1.313	1.208	0.302	0.218	0.566	0.967	1.930	2.891	0.460	0.633	0.940	0.675	0.077	0.214	0.361	0.397	0.603	0.066	3.693	0.043	0.147	0.069
7352	chr7	81673525	81682535	+	0	NA	intron (NM_000722, intron 10 of 38)	intron (NM_000722, intron 10 of 38)	39537	NR_110077	101927356	Hs.571348	NR_110076	ENSG00000223770	LOC101927356	-	uncharacterized LOC101927356	ncRNA	1.180	1.043	1.676	0.308	4.948	2.353	0.790	0.265	0.036	0.661	0.478	0.684	1.162	0.162	0.143	2.321	2.034	0.746	0.360	0.534	0.838	2.382	0.826	0.220	0.251	1.287	1.685	1.108	1.127	0.642	0.294	0.273	0.372	6.721	9.443	1.527	4.695	1.343	0.757	1.213	0.171	1.887	0.237	0.790	0.684	0.056	0.474	0.044	0.632
7759	chr8	77577389	77622684	+	0	NA	intron (NM_024721, intron 1 of 10)	intron (NM_024721, intron 1 of 10)	-4526	NR_024360	100192378	Hs.596420	NR_024360	ENSG00000253661	ZFHX4-AS1	-	ZFHX4 antisense RNA 1	ncRNA	1.269	0.657	0.976	0.276	0.322	0.198	1.059	1.959	0.234	0.352	0.208	0.064	0.311	3.839	0.120	1.172	0.945	4.511	4.778	1.764	1.706	0.605	0.187	5.730	5.817	1.033	1.343	0.377	0.437	1.122	0.819	0.609	1.718	3.709	3.529	0.365	0.711	1.033	0.660	0.169	1.604	0.901	0.032	1.059	0.064	0.011	0.549	0.420	0.131
3647	chr18	5139875	5145301	+	0	NA	TTS (NM_001330553)	TTS (NM_001330553)	54667	NM_001145194	642597	Hs.437160	NM_001145194	ENSG00000231824	AKAIN1	C18orf42	A-kinase anchor inhibitor 1	protein-coding	0.755	0.755	1.903	0.064	0.186	0.036		0.056	0.060	0.144	0.179	0.004	nan	0.040	0.107	0.402	0.161	0.281	0.359	0.462	0.696	13.007	3.945	0.148	0.142	0.083	nan	0.935	0.697	nan	0.433	0.044	0.186	4.192	4.889	0.293	nan	nan	0.467	0.011	0.082	0.946	0.015		0.004	0.291	0.019		0.046
1557	chr11	84123491	84133060	+	0	NA	intron (NM_001142699, intron 7 of 27)	MIRb|SINE|MIR	-99893	NM_001206769	1740	Hs.367656	NM_001364	ENSG00000150672	DLG2	PPP1R58|PSD-93|PSD93|chapsyn-110	discs large MAGUK scaffold protein 2	protein-coding	0.660	0.791	0.616	0.075	0.387	0.285	0.903	0.063	0.152	0.116	0.234	0.061	0.350	0.125	0.125	0.716	0.488	6.225	5.014	0.330	0.415	0.676	0.217	0.743	0.724	0.553	0.737	0.410	0.468	0.407	0.222	0.742	1.268	0.136	0.154	0.448	1.513	0.737	0.629	0.017	0.084	0.020	0.084	0.903	0.061	0.020	0.149	1.082	0.208
2281	chr13	40695749	40710388	+	0	NA	Intergenic	Intergenic	-52878	NR_046870	100874127	Hs.578028	NR_046870	ENSG00000230710	LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA	0.772	0.632	0.611	0.061	0.149	0.088	0.176	0.160	0.049	0.053	0.068	0.262	0.162	0.059	0.083	0.722	0.416	0.197	0.190	0.368	0.451	0.166	0.125	0.148	0.110	2.900	2.934	0.092	0.100	0.528	0.335	0.182	0.286	0.040	0.063	0.341	0.808	0.150	0.201	0.146	0.060	0.013	0.049	0.176	0.262	0.119	0.056	0.048	0.102
425	chr1	102357678	102397357	+	0	NA	intron (NM_058170, intron 1 of 5)	intron (NM_058170, intron 1 of 5)	39949	NR_033424	94236	Hs.606193	NR_033424		DNAJA1P5	HEJ1	DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5	pseudo	1.004	nan	nan	0.259	0.228	0.089	0.135	0.106	0.073	0.129	0.093	0.435	0.610	0.052	0.138	0.394	0.307	0.368	0.587	0.428	nan	0.057	0.041	0.273	0.252	6.120	6.597	nan	nan	0.584	0.370	0.128	0.272	0.466	0.843	0.648	nan	0.578	0.422	0.020	0.072	0.086	0.024	0.135	0.435	0.017	0.070	0.062	0.464
1486	chr11	67571796	67596960	+	0	NA	Intergenic	Intergenic	-11571	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo	nan	1.111	0.663	0.675	0.500	0.249	1.133	0.146	0.128	0.223	0.179	1.034	1.989	0.396	0.144	0.801	0.961	0.444	0.761	1.462	1.295	0.358	0.156	1.009	1.108	0.532	0.803	2.217	2.905	0.968	0.731	0.522	0.678	0.269	0.391	1.187	2.127	0.786	0.550	4.475	1.113	0.057	0.181	1.133	1.034	0.240	0.802	0.268	0.402
6874	chr6	94101829	94132816	+	0	NA	intron (NM_004440, intron 3 of 16)	intron (NM_004440, intron 3 of 16)	11978	NM_001288630	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK-3|EHK3|EK11|HEK11	EPH receptor A7	protein-coding	nan	1.253	nan	2.059	1.347	0.741	0.746	0.078	0.083	1.145	0.737	0.799	3.262	0.070	0.095	1.821	1.981	0.784	0.602	1.848	1.685	nan	1.325	7.135	6.932	1.916	nan	1.155	1.400	nan	0.773	0.147	0.290	2.030	1.639	0.462	0.815	0.495	0.348	0.350	0.328	0.507	0.838	0.746	0.799	0.085	0.655	0.051	0.365
2056	chr12	84257053	84261920	+	0	NA	Intergenic	Intergenic	1047122	NM_018057	55117	Hs.44424	NM_018057	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	solute carrier family 6 member 15	protein-coding	0.712	0.713	0.543	0.054	0.264	0.165	0.282	0.298	0.264	0.129	0.101	0.025	0.223	0.044	0.093	0.526	0.419	8.903	2.666	0.406	0.413	0.325	0.124	0.301	0.304	0.604	0.742	0.350	0.245	0.368	0.132	0.131	0.205	0.235	0.191	0.215	0.215	0.530	0.599	0.011	0.054	0.040	0.083	0.282	0.025	0.080	0.071	0.020	0.052
4987	chr20	48525978	48555984	+	0	NA	intron (NR_134564, intron 2 of 2)	MIR|SINE|MIR	8622	NR_134564	105372653	Hs.589895	NR_134564		LOC105372653	-	uncharacterized LOC105372653	ncRNA	nan	nan	1.855	1.378	1.404	0.637	0.948	1.416	0.317	0.726	0.470	1.318	2.609	0.983	0.134	2.197	2.430	1.366	2.322	1.960	1.903	nan	2.045	2.268	2.407	1.355	1.877	2.013	3.357	nan	2.478	1.430	2.067	1.170	1.326	2.719	4.231	1.868	1.412	0.517	1.206	0.134	0.512	0.948	1.318	0.572	0.919	0.503	1.157
6883	chr6	101889447	101907450	+	0	NA	intron (NM_001166247, intron 1 of 16)	intron (NM_001166247, intron 1 of 16)	51587	NM_021956	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding	0.957	nan	nan	0.133	0.217	0.122	0.210	0.515	0.102	0.114	0.118	0.026	0.252	0.030	0.124	0.437	0.277	0.607	1.069	0.288	nan	0.198	0.110	0.297	0.217	2.802	3.313	0.235	0.235	nan	0.229	0.212	0.184	0.597	0.531	0.360	0.733	0.245	0.255	0.080	0.211	0.117	0.048	0.210	0.026	0.016	0.609	0.084	0.144
5223	chr22	27035565	27070213	+	0	NA	promoter-TSS (NR_003491)	promoter-TSS (NR_003491)	-557	NR_033319	440823	Hs.517502	NR_003491	ENSG00000225783	MIAT	C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT	myocardial infarction associated transcript (non-protein coding)	ncRNA	nan	1.613	0.741	3.520	3.850	1.972	3.633	0.512	0.059	1.895	0.989	6.502	5.070	0.429	0.060	1.622	2.048	0.893	nan	7.745	7.779	5.814	1.796	1.932	2.112	1.014	nan	3.608	4.863	2.317	2.050	0.862	1.420	2.662	3.042	0.701	nan	4.808	2.480	1.173	1.770	1.074	2.080	3.633	6.502	0.706	1.977	1.353	0.222
2876	chr15	51315104	51318584	+	0	NA	Intergenic	MIRb|SINE|MIR	70058	NM_001311175	388121	Hs.306343	NM_207381	ENSG00000183578	TNFAIP8L3	TIPE3	TNF alpha induced protein 8 like 3	protein-coding	1.381	0.897	2.754	0.172	0.257	0.181	0.154	0.862	0.460	0.044	0.153	0.104	0.565	0.063	0.078	0.346	0.200	0.292	0.238	0.250	0.226	0.196	0.072	0.090	0.246	7.396	8.358	0.153	0.245	4.293	5.990	0.068	0.114	0.192	0.277	0.216	0.397	1.102	1.171	0.080	0.025	0.054	0.046	0.154	0.104	3.621	0.555	0.058	0.143
3428	chr17	43970903	43986777	+	0	NA	intron (NM_001123066, intron 1 of 14)	intron (NM_001123066, intron 1 of 14)	5691	NR_024560	100130148	Hs.669307	NR_024560	ENSG00000279685	MAPT-IT1	-	MAPT intronic transcript 1	ncRNA	1.939	1.611	nan	3.037	7.885	4.214	1.913	0.168	0.050	2.912	1.198	2.073	2.156	0.808	0.113	1.573	1.620	0.285	0.401	7.360	nan	4.775	1.423	0.991	1.066	2.488	3.155	1.596	nan	4.672	3.999	1.180	1.798	4.301	3.452	0.737	1.453	3.717	1.845	2.383	0.510	1.069	2.613	1.913	2.073	1.318	1.128	0.514	0.131
7426	chr7	107632849	107644205	+	0	NA	intron (NM_002291, intron 4 of 33)	intron (NM_002291, intron 4 of 33)	5277	NM_002291	3912	Hs.650585	NM_002291	ENSG00000091136	LAMB1	CLM|LIS5	laminin subunit beta 1	protein-coding	nan	0.875	3.162	0.263	0.365	0.248	0.731	3.332	0.317	0.383	0.334	0.165	1.054	0.163	0.157	0.494	0.459	1.655	3.997	1.167	1.113	3.724	0.856	0.275	0.327	1.174	1.938	0.277	0.291	1.754	2.096	0.488	0.723	4.074	4.520	2.597	nan	3.972	2.141	0.775	0.274	1.048	0.604	0.731	0.165	0.971	0.036	0.139	0.894
6889	chr6	107147527	107153629	+	0	NA	Intergenic	Intergenic	-72212	NM_001318746	84816	Hs.155839	NM_032730	ENSG00000130347	RTN4IP1	NIMP|OPA10	reticulon 4 interacting protein 1	protein-coding	0.916	nan	nan	5.438	6.509	3.149	0.464	0.086	0.026	1.422	0.522	4.442	5.544	0.018	0.183	8.907	7.867	0.262	0.270	3.051	nan	12.655	6.569	0.161	0.213	0.334	0.472	7.409	6.735	nan	0.249	0.468	0.709	3.177	2.343	0.192	0.279	2.656	1.409	2.588	4.291	0.327	0.105	0.464	4.442	0.186	2.512	0.568	0.100
5589	chr3	143813903	143839411	+	0	NA	Intergenic	Intergenic	134490	NM_001134470	205428	Hs.288954	NM_173552	ENSG00000181744	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding	1.477	nan	nan	0.393	0.660	0.342	0.500	0.164	0.124	0.258	0.243	0.066	0.564	0.012	0.073	0.312	0.245	0.318	0.548	0.271	0.403	nan	1.658	0.309	0.309	1.336	nan	0.439	nan	nan	0.919	0.158	0.218	0.402	0.564	1.496	3.607	0.604	0.564	0.041	0.070	0.142	0.728	0.500	0.066	0.054	0.083	0.074	1.165
6490	chr5	145704900	145726003	+	0	NA	Intergenic	Intergenic	-3136	NM_002700	5459	Hs.553499	NM_002700	ENSG00000091010	POU4F3	BRN3C|DFNA15|DFNA42|DFNA52	POU class 4 homeobox 3	protein-coding	nan	0.731	0.459	0.116	0.267	0.152	0.116	0.074	0.145	0.089	0.078	0.103	0.810	0.052	0.097	0.186	0.137	0.117	0.112	0.407	0.414	0.334	0.078	0.064	0.070	0.185	0.317	0.219	0.304	0.416	0.262	0.177	0.220	1.160	0.547	0.118	0.190	0.718	0.525	0.039	0.047	0.082	6.483	0.116	0.103	0.069	0.044	0.056	0.053
2782	chr14	104058938	104065339	+	0	NA	Intergenic	Intergenic	32844	NR_126431	84334	Hs.598441	NM_032374	ENSG00000256053	APOPT1	APOP|APOP1|C14orf153	apoptogenic 1, mitochondrial	protein-coding	2.142	1.298	6.349	2.910	2.034	0.784	4.648	0.249	0.202	1.314	1.392	7.313	3.191	0.059	0.100	3.316	4.402	3.011	5.861	14.666	13.651	5.933	1.275	0.343	0.284	1.513	2.282	6.240	5.253	2.835	3.449	1.398	2.782	2.928	1.938	0.432	0.876	3.323	1.739	6.911	3.847	0.518	1.111	4.648	7.313	0.795	1.832	1.715	0.135
5720	chr3	181055625	181063493	+	0	NA	intron (NR_075093, intron 2 of 4)	AluY|SINE|Alu	100715	NR_125407	102724604	Hs.570524	NR_125407	ENSG00000241231	LOC102724604	-	uncharacterized LOC102724604	ncRNA	0.814	0.905	0.630	0.156	0.219	0.102	0.491	0.106	0.206	0.261	0.186	0.030	0.422	0.054	0.069	0.233	0.123	0.088	0.149	0.522	0.595	10.812	3.173	0.145	0.100	0.164	0.362	0.333	0.240	0.794	0.354	0.101	0.158	0.149	0.168	0.196	0.306	0.465	0.469	0.021	0.201	0.025	0.646	0.491	0.030	0.028	0.038	0.037	0.063
2037	chr12	79321772	79334978	+	0	NA	intron (NM_001291901, intron 1 of 9)	intron (NM_001291901, intron 1 of 9)	69926	NM_001291901	6857	Hs.310545	NM_005639	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin 1	protein-coding	nan	1.192	0.853	2.546	2.698	1.215	0.224	0.435	0.107	2.558	1.439	1.310	0.771	0.042	0.085	0.207	0.191	0.104	0.154	3.097	2.974	5.497	2.743	0.201	0.250	3.039	3.779	nan	2.858	2.057	1.176	0.165	0.225	1.893	3.656	1.793	3.897	nan	1.617	0.118	0.928	0.411	0.154	0.224	1.310	0.015	1.367	0.022	1.430
5044	chr20	61846454	61859340	+	0	NA	Intergenic	Intergenic	-5359	NM_017798	54915	Hs.744852	NM_017798	ENSG00000149658	YTHDF1	C20orf21	YTH N6-methyladenosine RNA binding protein 1	protein-coding	1.916	2.162	1.917	1.516	1.088	0.617	1.516	0.833	0.138	0.508	0.307	1.794	2.799	1.054	0.107	2.820	nan	1.427	1.825	2.880	2.716	3.390	1.216	4.732	4.466	1.324	1.914	1.638	2.510	2.148	2.091	1.628	2.389	0.701	0.768	1.171	1.204	1.881	1.221	5.777	2.343	0.097	0.445	1.516	1.794	0.443	1.746	0.337	0.338
8297	chr9	132164015	132185915	+	0	NA	Intergenic	AluSz6|SINE|Alu	75763	NR_120686	100506119	Hs.624047	NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA	nan	1.700	1.816	1.880	3.057	1.574	3.659	1.478	0.301	0.860	0.480	3.345	2.656	1.874	0.114	1.931	2.379	1.164	2.414	3.264	3.440	nan	0.313	1.211	1.293	0.731	1.081	3.793	5.841	3.608	3.799	1.666	2.164	1.760	1.856	1.785	2.931	1.048	0.773	1.668	2.294	0.636	0.497	3.659	3.345	1.057	2.230	1.794	0.898
532	chr1	150597909	150603414	+	0	NA	intron (NM_207168, intron 1 of 1)	intron (NM_207168, intron 1 of 1)	948	NM_207045	2029	Hs.632456	NM_004436	ENSG00000143420	ENSA	ARPP-19e	endosulfine alpha	protein-coding	nan	nan	3.985	2.724	2.855	1.562	3.698	2.274	0.546	4.488	1.794	4.785	12.793	2.561	0.197	5.343	4.819	9.257	13.145	7.472	nan	6.674	5.669	12.407	13.608	3.937	4.613	3.910	6.265	4.259	2.948	8.324	9.973	4.526	5.330	4.986	5.699	2.839	1.476	2.137	5.984	0.759	1.438	3.698	4.785	0.634	2.538	3.938	1.406
1193	chr10	102801697	102812108	+	0	NA	Intergenic	Intergenic	-14097	NM_001319303	81621	Hs.534859	NM_030929	ENSG00000107821	KAZALD1	BONO1|FKSG28|FKSG40|IGFBP-rP10	Kazal type serine peptidase inhibitor domain 1	protein-coding	nan	nan	1.502	1.550	6.185	3.810	0.678	0.838	0.186	0.902	0.417	3.301	2.782	0.907	0.066	3.604	3.679	2.210	3.125	4.173	3.793	4.609	1.919	1.320	1.346	0.799	nan	4.884	6.317	0.827	0.669	1.213	1.633	1.431	1.297	1.283	nan	2.407	1.141	1.661	4.886	0.267	0.378	0.678	3.301	0.550	1.453	1.414	0.390
2455	chr13	112309009	112350376	+	0	NA	Intergenic	Intergenic	81336	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA	0.699	nan	0.903	1.930	2.128	1.129	4.835	0.069	0.066	0.496	0.287	2.856	2.081	0.036	0.074	0.418	0.201	0.175	0.261	3.259	3.109	2.726	0.887	0.054	0.039	0.027	0.058	1.673	1.940	0.819	0.919	0.402	0.471	1.274	1.218	0.089	0.157	0.610	0.299	2.992	1.301	0.338	1.380	4.835	2.856	0.007	0.082	0.133	0.030
3963	chr19	10757619	10769948	+	0	NA	non-coding (NR_024333, exon 1 of 1)	non-coding (NR_024333, exon 1 of 1)	765	NR_024333	147727	Hs.631616	NR_024333	ENSG00000267100	ILF3-AS1	-	ILF3 antisense RNA 1 (head to head)	ncRNA	4.144	2.291	4.145	2.994	4.092	2.227	3.827	1.274	0.273	1.847	0.677	3.150	6.583	1.805	0.094	4.497	4.299	4.635	6.074	7.180	6.672	6.798	3.265	8.432	8.891	2.821	4.145	5.739	7.977	7.688	9.059	1.940	3.777	4.730	5.264	5.120	3.802	2.771	1.887	3.734	1.768	1.056	1.294	3.827	3.150	1.361	1.524	0.675	1.276
55	chr1	8012923	8028532	+	0	NA	promoter-TSS (NM_001123377)	promoter-TSS (NM_001123377)	-987	NM_007262	11315	Hs.419640	NM_007262	ENSG00000116288	PARK7	DJ-1|DJ1|HEL-S-67p	Parkinsonism associated deglycase	protein-coding	2.079	nan	2.267	4.053	1.252	0.715	0.599	1.574	0.137	0.679	0.486	0.705	3.621	1.384	0.116	1.502	1.802	1.170	1.929	4.830	4.698	1.709	0.808	3.151	3.284	2.672	nan	nan	8.671	nan	1.513	1.244	1.815	1.019	1.065	1.918	2.821	2.242	1.338	0.873	0.933	0.225	0.470	0.599	0.705	0.550	0.850	0.784	0.886
3592	chr17	77668756	77682870	+	0	NA	Intergenic	Intergenic	5245	NR_039893	100616170		NR_039893	ENSG00000266665	MIR4739	mir-4739	microRNA 4739	ncRNA	0.979	0.754	0.779	0.143	0.417	0.227	0.380	0.043	0.092	0.122	0.104	0.085	0.871	0.091	0.097	0.384	0.475	0.176	0.181	1.486	1.267	0.289	0.102	0.190	0.162	nan	2.056	0.201	0.219	3.894	5.631	0.235	0.299	0.086	0.133	1.269	2.471	nan	0.368	0.382	0.602	0.054	0.118	0.380	0.085	0.494	0.067	0.014	0.929
1681	chr11	117621806	117653520	+	0	NA	intron (NM_020693, intron 3 of 32)	intron (NM_020693, intron 3 of 32)	30313	NM_020693	57453	Hs.659513	NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding	0.689	1.146	0.582	0.362	0.439	0.216	0.384	0.035	0.025	0.182	0.155	0.817	0.551	0.068	0.087	0.765	nan	0.237	0.336	1.148	1.380	2.707	0.644	0.307	0.302	0.471	nan	1.521	1.439	0.545	0.441	0.786	1.136	0.550	0.468	0.275	0.676	1.652	0.943	1.969	0.121	0.054	0.406	0.384	0.817	0.301	0.076	0.240	0.133
6134	chr5	1592718	1613026	+	0	NA	intron (NR_003713, intron 2 of 3)	intron (NR_003713, intron 2 of 3)	-8226	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	succinate dehydrogenase complex flavoprotein subunit A pseudogene 3	pseudo	0.936	3.053	2.066	0.749	2.105	1.041	0.757	0.340	0.191	0.535	0.506	9.146	2.102	0.775	0.096	1.029	1.385	0.421	nan	6.906	6.882	3.315	0.790	0.582	0.639	1.494	2.077	nan	6.571	nan	0.782	0.848	1.460	0.694	0.648	0.582	0.986	2.325	nan	3.767	1.563	0.121	0.207	0.757	9.146	0.345	0.760	0.353	0.448
6434	chr5	123955920	124101935	+	0	NA	intron (NM_020747, intron 2 of 8)	intron (NM_020747, intron 2 of 8)	51878	NM_020747	57507	Hs.266616	NM_020747	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding	nan	1.423	1.026	0.948	1.251	0.667	0.606	0.885	0.113	0.874	0.525	0.262	1.072	8.282	0.226	1.070	1.427	4.770	nan	0.742	0.744	1.894	0.852	2.205	2.149	1.963	2.579	0.735	0.826	1.368	1.114	0.720	1.387	2.626	3.222	0.813	1.756	0.787	0.469	0.376	0.377	0.789	0.325	0.606	0.262	0.184	0.585	1.201	0.416
395	chr1	87858159	87867696	+	0	NA	Intergenic	Intergenic	-25589	NR_038324	100505768	Hs.125247	NR_038324	ENSG00000227290	LINC01364	-	long intergenic non-protein coding RNA 1364	ncRNA	1.517	nan	nan	3.199	5.407	2.708	0.364	0.119	0.033	0.890	0.303	0.460	3.905	0.062	0.142	0.288	0.400	0.482	0.838	1.252	1.426	2.182	0.847	0.315	0.327	1.702	2.157	3.290	2.957	0.500	0.336	0.307	0.834	4.122	5.699	0.484	0.861	2.123	1.283	1.033	1.417	0.930	0.074	0.364	0.460		0.057	1.322	0.604
5848	chr4	23268429	23274471	+	0	NA	Intergenic	Intergenic	555738	NM_001277225	57733	Hs.653107	NM_020973	ENSG00000249948	GBA3	CBG|CBGL1|GLUC|KLRP	glucosylceramidase beta 3 (gene/pseudogene)	protein-coding	0.671	0.568	nan	0.189	1.033	0.558	0.271	0.124	0.028	2.046	1.101	0.059	0.234	0.036	0.084	0.371	0.275	0.423	0.632	0.276	0.267	5.001	2.358	0.325	0.236	0.423	0.391	0.201	0.208	0.329	0.147	0.183	0.185	1.502	1.575	0.244	0.189	6.166	2.579	0.036	0.249	0.393	0.092	0.271	0.059		0.016	0.049	0.021
2295	chr13	49156620	49170816	+	0	NA	Intergenic	LTR26E|LTR|ERV1	-8681	NR_051983	100129597	Hs.175225	NR_051983	ENSG00000233610	LINC00462	-	long intergenic non-protein coding RNA 462	ncRNA	0.750	nan	nan	0.174	0.120	0.079	0.172	0.173	0.113	0.077	0.123	0.051	0.117	0.069	0.078	5.542	8.658	2.167	1.636	0.364	0.422	nan	0.139	0.734	0.799	0.136	0.253	0.115	0.144	0.438	0.284	0.311	0.511	0.114	0.068	0.798	nan	0.291	0.211	0.043	0.069	0.027	0.056	0.172	0.051	0.034	0.028	0.126	0.453
3584	chr17	76373426	76416642	+	0	NA	intron (NR_111989, intron 3 of 8)	MLT1K|LTR|ERVL-MaLR	20335	NM_024419	9489	Hs.654671	NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding	1.187	1.874	1.783	1.395	4.352	2.199	0.759	0.342	0.207	0.793	0.423	5.058	2.377	0.302	0.131	0.961	1.219	0.687	1.307	4.866	5.364	3.142	1.166	0.838	0.849	nan	1.069	3.751	4.312	1.920	1.744	0.535	0.806	1.425	1.593	0.680	1.032	nan	0.748	1.548	3.599	0.441	0.426	0.759	5.058	0.196	0.630	0.160	0.258
1550	chr11	82419110	82437737	+	0	NA	Intergenic	Arthur1|DNA|hAT-Tip100	16483	NM_175885	220382	Hs.448218	NM_175885	ENSG00000182103	FAM181B	-	family with sequence similarity 181 member B	protein-coding	0.557	0.627	0.689	0.109	0.217	0.171	0.138	0.085	0.078	0.101	0.094	0.051	0.343	0.064	0.119	0.520	0.452	0.218	0.326	0.325	0.398	0.211	0.100	0.610	0.667	3.492	4.768	0.346	0.409	0.481	0.255	0.269	0.319	0.112	0.168	0.086	0.296	0.821	0.542	0.017	0.080	0.066	0.039	0.138	0.051	0.015	0.054	0.064	0.046
7982	chr8	143252570	143307803	+	0	NA	intron (NR_024378, intron 1 of 2)	intron (NR_024378, intron 1 of 2)	469	NR_024378	619434	Hs.393308	NR_024378	ENSG00000254008	LINC00051	C8orf43|NCRNA00051	long intergenic non-protein coding RNA 51	ncRNA	1.501	0.815	nan	0.138	1.654	0.864	0.514	0.050	0.076	0.198	0.102	2.111	2.008	0.047	0.065	0.753	1.371	0.087	0.130	nan	4.827	nan	0.100	0.196	0.209	0.589	0.817	1.361	1.516	1.462	1.177	0.741	1.038	0.575	0.569	0.847	1.856	0.793	0.577	2.730	1.161	0.105	0.265	0.514	2.111	0.359	0.201	0.479	0.734
2533	chr14	31493498	31497187	+	0	NA	promoter-TSS (NM_001254728)	promoter-TSS (NM_001254728)	265	NM_014574	29966	Hs.401843	NM_014574	ENSG00000196792	STRN3	PPP2R6B|S/G2NA|SG2NA	striatin 3	protein-coding	9.733	4.534	6.067	6.815	5.584	2.542	4.240	10.729	1.782	1.878	1.476	6.038	10.786	7.656	0.271	3.835	3.941	7.925	11.712	10.424	9.007	5.873	1.784	19.189	19.481	5.975	6.578	6.387	11.357	14.857	15.383	4.853	12.004	7.894	7.635	6.373	6.362	3.149	1.851	6.122	6.178	1.650	5.838	4.240	6.038	2.047	4.034	2.651	2.071
7454	chr7	116370024	116376652	+	0	NA	intron (NM_001127500, intron 3 of 20)	intron (NM_001127500, intron 3 of 20)	60894	NM_001324401	4233	Hs.132966	NM_000245	ENSG00000105976	MET	AUTS9|DFNB97|HGFR|RCCP2|c-Met	MET proto-oncogene, receptor tyrosine kinase	protein-coding	nan	0.552	0.747	0.304	0.150	0.097	0.096	0.352	0.080	0.143	0.267	0.090	0.345	0.213	0.184	1.292	0.770	13.659	6.671	0.224	0.294	0.240	0.110	0.590	0.524	0.279	0.430	0.625	0.748	0.394	0.142	0.345	0.942	0.220	0.236	0.188	0.258	0.603	0.775	0.424	0.243	0.044	0.023	0.096	0.090	0.014	0.046	0.077	0.149
4434	chr2	92289504	92299073	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	165129	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo	16.261	18.134	15.600	5.195	10.570	6.466	10.118	5.786	15.017	5.558	9.279	3.814	15.725	3.054	6.871	14.754	8.363	6.813	8.558	10.740	13.308	6.030	5.348	9.266	8.751	7.245	9.636	8.928	7.401	14.644	4.945	6.125	8.981	3.370	5.229	6.222	8.305	3.866	5.625	1.533	2.929	2.995	2.270	10.118	3.814	1.968	2.868	2.804	2.455
6038	chr4	143389656	143399706	+	0	NA	intron (NM_003866, intron 2 of 26)	L1PA14|LINE|L1	373007	NM_003866	8821	Hs.176376	NM_003866	ENSG00000109452	INPP4B	-	inositol polyphosphate-4-phosphatase type II B	protein-coding	0.618	1.197	1.789	2.452	0.318	0.160	0.039	0.102	0.032	0.219	0.091	3.434	1.528	0.021	0.075	0.217	0.176	0.339	0.865	2.426	3.134	0.135	0.048	0.690	0.733	0.429	0.561	10.086	11.993	0.520	0.176	0.106	0.170	0.556	0.526	0.285	0.624	0.840	0.577	0.005	0.115	0.115	0.110	0.039	3.434	0.019	0.132	0.039	0.136
5965	chr4	89909863	89945435	+	0	NA	intron (NM_014883, intron 3 of 23)	LTR1B|LTR|ERV1	50697	NM_014883	10144	Hs.97270	NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding	0.896	1.330	0.941	1.238	1.551	0.839	0.144	0.231	0.104	0.502	0.300	1.174	1.161	0.012	0.068	0.272	0.244	0.711	0.558	0.739	0.835	1.122	1.111	0.264	0.272	0.949	nan	1.773	1.821	0.464	0.281	0.241	0.232	0.865	1.389	1.301	nan	1.517	0.727	2.197	1.439	0.222	0.134	0.144	1.174	0.033	0.348	0.070	1.572
3348	chr17	28442971	28445897	+	0	NA	promoter-TSS (NR_036149)	promoter-TSS (NR_036149)	-256	NR_036149	100423003		NR_036149	ENSG00000266919	MIR3184	-	microRNA 3184	ncRNA	nan	nan	nan	2.630	8.280	4.064	4.737	6.912	0.293	1.662	0.639	5.345	9.195	6.490	0.288	7.177	6.677	12.137	16.296	8.854	8.649	10.072	5.108	21.980	24.281	8.844	9.833	8.955	14.596	19.129	17.084	7.677	11.548	9.383	11.135	11.253	nan	4.559	2.237	3.221	1.979	1.415	2.689	4.737	5.345	1.623	2.581	2.837	3.120
1908	chr12	32107886	32114893	+	0	NA	promoter-TSS (NM_018169)	promoter-TSS (NM_018169)	-964	NM_018169	55196	Hs.445129	NM_018169	ENSG00000174718	KIAA1551	C12orf35|UTA2-1	KIAA1551	protein-coding	2.296	nan	2.084	3.205	0.995	1.095	1.224	0.450	0.137	0.489	0.536	1.908	3.847	2.046	0.113	1.842	1.746	1.883	3.239	3.611	2.918	2.612	1.046	4.487	4.480	1.566	2.090	1.699	2.590	1.402	1.637	0.815	1.881	7.635	11.270	1.457	1.375	1.097	0.873	0.659	1.086	1.686	1.504	1.224	1.908	0.362	0.940	0.607	0.311
4291	chr2	38440130	38453871	+	0	NA	Intergenic	L1MB8|LINE|L1	88753	NR_027252	285154	Hs.353894	NM_173652	ENSG00000232973	CYP1B1-AS1	C2orf58	CYP1B1 antisense RNA 1	ncRNA	1.471	nan	nan	0.159	0.211	0.132	0.185	0.221	0.117	0.068	0.128	0.131	0.400	0.032	0.132	0.388	0.315	0.339	0.703	0.359	0.424	0.124	0.074	0.427	nan	0.788	1.303	0.315	0.313	nan	0.388	0.172	0.174	0.040	0.065	2.071	6.113	0.195	0.412	0.055	0.071	0.007	0.092	0.185	0.131	0.380	0.066	0.058	1.912
6480	chr5	141735350	141745384	+	0	NA	intron (NR_120664, intron 3 of 3)	intron (NR_120664, intron 3 of 3)	35509	NR_120664	101926941	Hs.658945	NR_120664	ENSG00000231185	LOC101926941	-	uncharacterized LOC101926941	ncRNA	nan	2.787	1.578	2.049	2.469	1.299	1.263	1.784	0.177	0.268	0.122	0.824	11.808	1.923	0.172	0.206	0.155	1.383	1.928	1.005	0.909	2.381	0.648	1.335	1.533	1.133	1.798	5.382	5.763	0.806	0.463	0.499	0.821	0.710	1.628	0.395	0.697	1.442	0.993	0.144	0.969	0.056	0.195	1.263	0.824	0.155	5.812	0.158	0.272
1098	chr10	35735167	35760286	+	0	NA	intron (NM_001282853, intron 2 of 10)	intron (NM_001282853, intron 2 of 10)	121924	NM_001282853	219771	Hs.14745	NM_145012	ENSG00000108100	CCNY	C10orf9|CBCP1|CCNX|CFP1	cyclin Y	protein-coding	0.914	1.759	1.250	0.132	1.350	0.743	0.648	0.635	0.225	0.389	0.184	0.360	0.665	0.099	0.090	0.717	0.793	0.628	nan	0.661	0.692	3.541	1.419	0.458	0.454	0.600	0.807	0.457	0.654	0.722	0.734	0.146	0.228	0.882	0.914	0.347	0.899	1.088	0.648	0.190	0.123	0.219	0.281	0.648	0.360	0.134	0.150	0.048	0.255
1718	chr11	126172748	126189822	+	0	NA	intron (NM_014026, intron 2 of 5)	L2b|LINE|L2	7638	NM_014026	28960	Hs.504249	NM_014026	ENSG00000110063	DCPS	ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015	decapping enzyme, scavenger	protein-coding	1.311	1.331	0.908	1.088	1.020	0.706	1.146	0.396	0.066	0.701	0.486	1.193	2.987	1.066	0.130	3.696	4.506	5.598	5.220	1.796	1.997	1.867	0.774	1.581	1.584	2.284	2.814	2.002	2.335	1.794	1.784	2.451	3.538	1.083	1.222	0.845	nan	1.359	0.872	2.135	0.605	0.273	0.595	1.146	1.193	0.256	0.451	1.362	0.687
2792	chr14	105063858	105072321	+	0	NA	intron (NM_001286390, intron 1 of 3)	intron (NM_001286390, intron 1 of 3)	3008	NM_001286390	388021	Hs.652298	NM_207379	ENSG00000258986	TMEM179	C14orf90|TMEM179A	transmembrane protein 179	protein-coding	2.993	2.833	0.568	0.665	2.117	0.928	4.655	0.178	0.090	1.429	0.745	0.469	4.109	0.128	0.120	2.562	3.336	0.622	1.234	10.036	9.113	4.492	2.095	0.055	0.027	1.375	1.667	5.842	8.773	2.248	2.193	1.777	1.878	0.819	0.895	0.119	0.139	2.713	1.660	8.314	0.357	0.190	0.141	4.655	0.469	1.219	0.228	0.526	0.029
8082	chr9	20639762	20647611	+	0	NA	Intergenic	Intergenic	-14622	NM_017794	54914	Hs.136247	NM_017794	ENSG00000188352	FOCAD	KIAA1797	focadhesin	protein-coding	1.069	nan	nan	0.091	0.307	0.119	0.261	0.134	0.083	0.201	0.267	0.122	0.565	0.027	0.068	0.143	0.283	0.497	0.830	0.350	0.422	1.061	0.350	0.113	0.161	5.439	5.929	0.283	0.237	0.515	0.249	0.253	0.549	1.407	1.929	0.216	1.022	1.142	0.981	0.063	0.124	0.364	0.152	0.261	0.122	0.248	0.026	0.114	0.174
6748	chr6	37444776	37486259	+	0	NA	intron (NM_138493, intron 1 of 3)	AluSx1|SINE|Alu	2183	NM_138493	154467	Hs.284207	NM_138493	ENSG00000198937	CCDC167	C6orf129|HSPC265	coiled-coil domain containing 167	protein-coding	nan	1.329	nan	1.024	3.016	1.550	3.204	0.304	0.073	0.855	0.423	3.255	3.209	0.287	0.103	1.066	1.633	0.642	nan	nan	1.673	3.080	1.449	1.102	1.191	2.251	2.772	2.017	2.922	2.205	2.343	0.554	0.826	1.518	1.106	1.103	1.847	2.778	1.267	2.727	1.148	0.458	0.550	3.204	3.255	0.584	0.568	0.447	0.766
3003	chr15	99189139	99195403	+	0	NA	non-coding (NR_126453, exon 1 of 1)	non-coding (NR_126453, exon 1 of 1)	503	NM_001291858	3480	Hs.643120	NM_000875	ENSG00000140443	IGF1R	CD221|IGFIR|IGFR|JTK13	insulin like growth factor 1 receptor	protein-coding	nan	nan	nan	2.146	0.913	0.486	1.610	0.333		2.003	0.876	2.081	5.879	5.198	0.134	4.822	6.032	0.538	0.598	3.168	1.967	nan	0.220	6.000	5.668	1.907	3.252	1.080	1.309	nan	12.749	2.423	6.193	2.326	2.017	8.266	nan	0.686	0.619	0.409	4.044	0.560	1.598	1.610	2.081	1.519	2.293	1.661	2.270
6242	chr5	40833129	40836683	+	0	NA	intron (NM_000997, intron 1 of 3)	intron (NM_000997, intron 1 of 3)	481	NM_000997	6167	Hs.447582	NM_000997	ENSG00000145592	RPL37	L37	ribosomal protein L37	protein-coding	4.466	4.855	9.302	6.282	3.768	2.383	3.937	6.667	1.090	4.427	1.767	4.142	1.579	4.284	0.294	7.997	6.930	9.529	13.021	7.586	8.483	6.464	3.254	11.020	11.609	9.536	11.534	16.407	20.342	18.692	21.067	6.468	9.123	5.428	5.805	9.211	8.226	5.773	3.275	1.472	0.498	0.536	1.372	3.937	4.142	2.149	6.208	1.445	2.876
7830	chr8	101316865	101326968	+	0	NA	intron (NM_001280539, intron 2 of 10)	CpG	478	NM_183419	25897	Hs.292882	NM_015435	ENSG00000034677	RNF19A	RNF19	ring finger protein 19A, RBR E3 ubiquitin protein ligase	protein-coding	5.356	nan	nan	4.899	9.127	5.145	2.597	2.970	0.397	1.151	0.615	7.606	14.330	1.082	0.126	2.993	3.836	3.377	4.983	10.832	10.915	nan	2.447	7.175	7.612	2.355	nan	6.291	nan	nan	3.528	2.612	6.048	2.453	2.404	5.136	nan	2.974	1.371	6.452	4.149	0.483	2.948	2.597	7.606	0.365	3.004	2.639	1.990
2665	chr14	70136003	70188055	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	-71775	NM_006925	6430	Hs.632326	NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding	2.656	2.480	3.839	2.376	1.696	0.865	1.716	0.504	0.130	1.239	0.838	1.672	2.195	0.113	0.120	0.537	0.887	0.436	0.649	3.113	3.111	3.988	1.051	0.591	0.628	2.012	2.574	4.551	nan	4.695	4.346	0.663	1.277	3.493	3.848	1.248	3.836	2.667	nan	6.894	2.837	1.322	1.564	1.716	1.672	0.248	0.304	0.842	1.773
5018	chr20	57457353	57484273	+	0	NA	intron (NM_001077489, intron 2 of 11)	intron (NM_001077489, intron 2 of 11)	3594	NR_132272	2778	Hs.125898	NM_000516	ENSG00000087460	GNAS	AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|POH|SCG6|SgVI	GNAS complex locus	protein-coding	2.907	2.372	1.811	1.332	1.306	0.797	1.559	1.684	0.194	0.886	0.521	1.637	3.359	2.292	0.129	2.316	nan	1.834	2.482	2.858	2.662	2.657	1.212	0.744	0.646	2.127	2.805	1.683	2.408	4.969	4.515	1.610	3.448	1.636	1.420	3.177	3.848	1.835	0.986	1.331	1.207	0.416	1.700	1.559	1.637	0.590	0.566	1.746	1.385
4609	chr2	176970389	177006199	+	0	NA	exon (NM_014213, exon 1 of 2)	exon (NM_014213, exon 1 of 2)	881	NM_014213	3235	Hs.236646	NM_014213	ENSG00000128709	HOXD9	HOX4|HOX4C|Hox-4.3|Hox-5.2	homeobox D9	protein-coding	2.179	2.241	1.533	2.427	3.779	1.988	1.152	0.335	0.108	1.489	0.949	8.434	5.409	0.935	0.089	0.738	1.088	1.990	2.481	6.248	5.801	2.254	0.908	0.836	0.892	1.038	1.475	3.142	3.732	1.523	1.696	2.759	4.952	1.686	1.477	0.444	0.948	1.798	0.929	6.000	0.973	0.552	0.294	1.152	8.434	0.198	2.434	2.182	0.104
7272	chr7	47489638	47501048	+	0	NA	intron (NM_022748, intron 4 of 30)	intron (NM_022748, intron 4 of 30)	126399	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding	1.931	2.958	nan	2.255	0.237	0.084	0.662	2.379	0.279	2.532	1.007	1.713	0.685	0.393	0.149	0.471	0.581	0.477	0.976	2.654	2.924	6.171	2.244	0.252	0.208	0.113	0.284	2.619	3.615	0.466	0.562	0.230	0.206	2.455	2.440	0.274	0.342	3.738	2.024		0.069	0.428	0.153	0.662	1.713	0.483	3.506	0.077	0.054
1269	chr11	792358	799047	+	0	NA	intron (NM_001191061, intron 1 of 9)	intron (NM_001191061, intron 1 of 9)	561	NM_024698	79751	Hs.99486	NM_024698	ENSG00000177542	SLC25A22	EIEE3|GC-1|GC1|NET44	solute carrier family 25 member 22	protein-coding	3.931	2.928	11.502	0.851	2.978	1.318	2.419	1.145	0.192	0.954	0.495	3.273	4.964	1.553	0.080	4.732	6.689	1.853	2.612	6.398	5.091	2.986	1.231	2.856	2.897	3.374	4.521	2.647	3.473	5.421	7.054	1.997	2.965	2.449	1.849	2.366	3.630	1.669	0.861	1.704	7.080	0.770	1.115	2.419	3.273	0.873	1.329	2.166	1.222
1671	chr11	116322398	116355655	+	0	NA	Intergenic	Intergenic	-171113	NR_135069	101929011	Hs.733911	NR_135069	ENSG00000237937	LOC101929011	-	uncharacterized LOC101929011	ncRNA	0.977	1.013	0.847	0.186	0.454	0.188	0.887	0.034	0.025	0.298	0.240	0.345	1.627	0.066	0.105	0.356	nan	0.159	0.334	0.375	0.518	2.095	0.587	0.117	0.124	1.588	nan	0.482	0.603	1.737	1.285	0.394	0.593	1.116	1.403	1.414	5.191	2.031	1.039	0.154	0.142	0.246	0.174	0.887	0.345	0.175	0.070	0.152	3.643
4242	chr2	18716950	18742919	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	12025	NM_020905	57665	Hs.120319	NM_020905	ENSG00000240857	RDH14	PAN2|SDR7C4	retinol dehydrogenase 14 (all-trans/9-cis/11-cis)	protein-coding	1.151	0.958	1.411	2.473	0.755	0.335	0.547	0.445	0.118	0.972	0.622	0.775	1.821	0.381	0.107	0.668	0.672	0.794	1.065	1.111	1.260	1.350	0.672	1.520	1.425	0.857	1.066	4.950	nan	1.116	0.914	0.355	0.611	0.958	1.177	0.893	nan	1.172	0.781	0.225	0.651	0.213	2.317	0.547	0.775	0.146	0.436	0.107	0.239
830	chr1	207482283	207496499	+	0	NA	Intergenic	LTR8|LTR|ERV1	-5426	NM_000574	1604	Hs.126517	NM_000574	ENSG00000196352	CD55	CR|CROM|DAF|TC	CD55 molecule (Cromer blood group)	protein-coding	1.733	2.166	1.341	0.680	0.859	0.258	0.974	0.884	0.114	0.735	0.413	0.615	1.614	0.206	0.137	1.590	1.874	2.921	7.165	2.160	2.016	0.330	0.111	nan	nan	0.319	0.681	1.195	2.426	1.325	1.306	0.622	1.166	0.103	0.212	1.959	3.165	1.253	0.994	0.063	0.866	0.020	0.369	0.974	0.615	0.252	0.271	0.370	0.995
7501	chr7	137523165	137533130	+	0	NA	5' UTR (NM_001321710, exon 2 of 33)	5' UTR (NM_001321710, exon 2 of 33)	2931	NM_001321709	9162	Hs.242947	NM_004717	ENSG00000157680	DGKI	DGK-IOTA	diacylglycerol kinase iota	protein-coding	nan	nan	nan	0.181	1.532	0.820	0.722	0.209	0.082	0.261	0.218	0.048	0.797	0.138	0.138	4.494	10.214	0.463	0.464	1.738	1.361	nan	1.080	10.313	10.543	0.158	nan	0.233	0.254	nan	0.667	3.097	6.009	0.172	0.105	0.188	0.320	1.403	nan	0.146	0.187	0.039	0.032	0.722	0.048	0.077	0.041	4.299	0.051
1101	chr10	38871574	38889063	+	0	NA	Intergenic	HSATII|Satellite|Satellite	-109409	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo	4.723	6.119	4.556	0.742	1.467	0.855	1.010	0.809	6.279	0.707	2.031	0.407	2.203	0.324	2.196	1.789	0.847	0.740	nan	1.336	2.068	0.780	0.782	1.012	0.961	1.628	1.824	1.390	1.446	2.042	0.676	1.246	1.707	0.621	1.104	1.244	1.624	0.678	0.963	0.203	0.719	0.436	0.300	1.010	0.407	0.112	0.245	0.520	0.599
1165	chr10	80997969	81037713	+	0	NA	intron (NM_020338, intron 7 of 24)	MER3|DNA|hAT-Charlie	-89379	NM_005729	10105	Hs.381072	NM_005729	ENSG00000108179	PPIF	CYP3|CyP-M|Cyp-D|CypD	peptidylprolyl isomerase F	protein-coding	1.716	0.895	4.017	0.352	0.752	0.452	0.475	0.350	0.053	0.280	0.192	1.869	0.423	0.172	0.067	1.468	2.251	0.547	0.872	1.395	1.306	1.026	0.360	0.319	0.300	0.963	1.225	1.017	1.586	1.161	1.774	0.396	0.667	0.451	0.372	0.574	1.154	0.611	0.489	0.164	0.676	0.082	0.484	0.475	1.869	1.048	0.074	0.282	0.505
6471	chr5	139173908	139192477	+	0	NA	intron (NM_032289, intron 1 of 14)	MIRb|SINE|MIR	7786	NM_032289	84249	Hs.21963	NM_032289	ENSG00000146005	PSD2	EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.905	0.536	nan	0.033	0.199	0.121	0.138	0.072	0.035	0.051	0.080	0.155	0.449	0.134	0.085	2.940	5.508	2.229	0.420	0.396	0.399	0.162	0.082	0.832	0.884	0.227	0.410	0.178	0.194	0.708	0.733	3.621	7.451	0.097	0.111	0.248	0.328	0.253	0.309	0.027	0.071	0.015	0.035	0.138	0.155	0.125	0.038	4.329	0.094
3940	chr19	3356113	3372554	+	0	NA	intron (NM_205843, intron 1 of 10)	MIR|SINE|MIR	-2232	NM_005597	4782	Hs.170131	NM_005597	ENSG00000141905	NFIC	CTF|CTF5|NF-I|NFI	nuclear factor I C	protein-coding	1.742	2.042	3.392	1.529	2.273	1.295	1.729	2.191	0.341	1.303	0.615	2.976	3.129	3.763	0.110	1.423	2.298	1.483	1.546	4.096	3.545	1.213	0.435	2.992	2.880	5.555	7.661	2.226	nan	5.557	5.753	0.952	1.525	1.694	1.434	0.655	0.964	1.446	0.912	1.793	1.569	0.603	0.180	1.729	2.976	0.751	1.831	0.766	0.420
335	chr1	60613113	60624261	+	0	NA	Intergenic	Intergenic	-79245	NM_152377	127795	Hs.47385	NM_152377	ENSG00000162598	C1orf87	CREF	chromosome 1 open reading frame 87	protein-coding	1.120	0.693	nan	0.110	0.305	0.158	0.137	0.184	0.159	0.140	0.178	0.205	0.515	0.020	0.137	0.350	0.204	0.210	0.341	0.524	0.573	0.968	0.277	0.290	0.395	nan	4.659	0.426	nan	0.558	0.418	0.128	0.249	0.325	0.231	0.216	0.383	2.207	1.029	0.124	0.052	0.111	0.053	0.137	0.205	0.321	0.091	0.035	0.122
3531	chr17	71487370	71508557	+	0	NA	intron (NM_001144952, intron 2 of 44)	MIRb|SINE|MIR	-11859	NR_135635	101928251	Hs.434726	NR_135635	ENSG00000264985	LOC101928251	-	uncharacterized LOC101928251	ncRNA	1.127	0.942	0.973	0.956	1.264	0.696	0.806	0.126	0.145	0.408	0.312	0.631	3.926	0.047	0.094	0.478	0.592	0.820	1.116	1.106	1.214	1.962	0.515	0.437	0.473	nan	0.428	3.641	4.571	1.703	1.588	0.356	0.412	0.372	0.569	1.086	3.628	nan	0.715	0.465	2.637	0.058	0.244	0.806	0.631	0.304	0.456	0.093	1.015
7691	chr8	59912150	59978077	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	86654	NM_014729	9760	Hs.491805	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding	1.732	nan	1.381	0.926	1.905	0.896	0.539	0.112	0.075	0.517	0.266	1.149	1.314	0.197	0.084	0.368	0.427	0.251	0.416	1.468	1.506	0.932	0.542	0.084	0.066	2.097	nan	0.746	0.741	0.445	0.220	0.086	0.138	3.793	5.153	0.149	0.247	1.622	0.833	0.494	0.523	1.078	0.717	0.539	1.149	0.044	1.216	0.025	0.101
7685	chr8	58764804	58775128	+	0	NA	Intergenic	Intergenic	111258	NR_134276	286178	Hs.255156	NR_134276	ENSG00000254139	LOC286178	-	uncharacterized LOC286178	ncRNA	0.762	nan	1.741	0.086	1.278	0.637	0.247	0.624	0.077	1.929	0.643	0.081	1.541	0.063	0.112	0.327	0.347	0.246	0.280	2.057	1.788	3.415	2.260	0.131	0.120	0.921	nan	0.172	0.168	0.529	0.259	0.242	0.351	1.420	0.922	0.126	0.195	3.884	2.422	0.027	0.034	0.203	0.031	0.247	0.081	0.038	0.167	0.171	0.201
5756	chr3	186581898	186615192	+	0	NA	Intergenic	Intergenic	-24633	NR_046662	100874095	Hs.80485	NR_046662	ENSG00000226482	ADIPOQ-AS1	-	ADIPOQ antisense RNA 1	ncRNA	1.457	2.108	1.084	0.209	0.411	0.236	0.357	0.115	0.116	0.080	0.150	0.088	0.655	0.059	0.083	0.618	0.595	0.175	0.444	0.319	0.380	0.250	0.108	0.276	0.235	0.145	0.293	0.415	0.515	1.144	0.725	0.293	0.282	0.117	0.128	1.864	4.892	0.244	0.300	0.112	1.183	0.051	0.275	0.357	0.088	0.226	0.043	0.196	2.457
3533	chr17	71630127	71647539	+	0	NA	intron (NM_001144952, intron 1 of 44)	MIR3|SINE|MIR	1394	NM_001144952	54549	Hs.435719	NM_019064	ENSG00000069188	SDK2	-	sidekick cell adhesion molecule 2	protein-coding	1.103	1.104	2.015	2.424	3.367	1.995	2.242	0.103	0.111	1.567	0.844	1.661	7.403	0.388	0.098	1.022	1.494	0.267	0.420	2.881	2.897	1.726	0.614	0.167	0.203	nan	0.740	1.882	2.045	1.122	0.816	0.325	0.584	0.482	0.347	0.770	1.982	nan	1.170	0.341	1.196	0.048	0.570	2.242	1.661	0.111	0.762	0.057	0.432
4856	chr20	12506795	12517398	+	0	NA	Intergenic	Intergenic	405515	NR_109872	102606466	Hs.602196	NR_109872		LOC102606466	-	uncharacterized LOC102606466	ncRNA	0.931	nan	1.699	0.209	0.696	0.445	0.267	0.154	0.151	0.118	0.140	0.197	0.518	0.020	0.076	1.366	1.159	0.462	0.368	2.093	1.697	1.197	0.356	0.316	0.289	1.382	1.440	0.869	0.946	1.721	1.580	0.174	0.494	0.641	0.818	0.607	1.363	0.835	0.670	0.288	1.148	0.070	0.592	0.267	0.197	2.007	0.451	0.102	0.187
440	chr1	109395735	109409820	+	0	NA	Intergenic	Intergenic	-1913	NR_049760	254268	Hs.729441	NM_152763	ENSG00000162641	AKNAD1	C1orf62	AKNA domain containing 1	protein-coding	1.720	nan	nan	0.069	0.200	0.171	0.227	0.233	0.125	0.056	0.087	1.245	0.320	0.046	0.110	0.312	0.317	0.194	0.213	0.675	nan	0.457	0.215	0.326	0.338	1.425	1.920	nan	nan	1.021	0.485	0.205	0.268	0.106	0.094	1.509	nan	0.320	0.365	0.039	0.120	0.013	4.017	0.227	1.245	0.318	0.073	0.183	2.718
2525	chr14	30353657	30369738	+	0	NA	intron (NM_001330069, intron 1 of 18)	intron (NM_001330069, intron 1 of 18)	35202	NM_002742	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding	1.661	1.042	1.275	0.307	0.607	0.358	0.103	0.353	0.212	0.185	0.225	0.439	0.566	0.074	0.131	0.363	0.284	0.186	0.414	0.697	0.845	1.058	0.466	0.268	0.252	4.141	4.488	0.916	1.144	1.344	0.751	0.355	0.722	1.128	2.069	0.159	0.457	1.033	0.739	0.262	0.291	0.273	0.108	0.103	0.439	0.213	0.411	0.659	0.031
1898	chr12	31252322	31274294	+	0	NA	Intergenic	Intergenic	-36527	NR_038927	100506660	Hs.586774	NR_038927	ENSG00000245614	DDX11-AS1	CONCR	DDX11 antisense RNA 1	ncRNA	1.895	nan	1.994	4.041	0.835	0.328	0.877	0.168	0.052	1.671	0.663	3.414	2.442	0.133	0.108	0.511	0.757	1.054	1.555	8.430	7.069	2.746	0.968	2.064	2.196	0.316	0.432	4.753	5.000	2.828	3.217	0.729	1.259	7.686	5.866	0.588	1.145	3.279	1.725	3.396	3.181	2.852	1.232	0.877	3.414	0.411	2.366	0.495	0.485
1044	chr10	14994222	15003839	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2408	NM_001080836	644890	Hs.257249	NM_001080836	ENSG00000197889	MEIG1	SPATA39|bA2K17.3	meiosis/spermiogenesis associated 1	protein-coding	nan	2.859	3.090	4.639	4.574	2.586	1.183	3.400	0.889	1.191	0.755	3.765	6.772	2.878	0.114	5.075	5.837	3.636	5.606	5.196	3.809	11.902	5.014	5.322	5.802	2.803	3.213	5.735	8.928	2.520	2.559	1.328	2.358	3.017	2.812	2.955	3.135	2.180	1.103	1.794	2.169	0.384	1.340	1.183	3.765	0.425	1.629	1.011	1.041
4668	chr2	202207096	202229386	+	0	NA	intron (NM_001289993, intron 1 of 14)	HAL1|LINE|L1	3880	NM_139163	130540	Hs.107944	NM_139163	ENSG00000155749	ALS2CR12	-	amyotrophic lateral sclerosis 2 chromosome region candidate 12	protein-coding	0.989	nan	0.868	0.103	0.339	0.140	0.326	0.172	0.115	0.063	0.112	0.097	0.392	0.034	0.094	0.308	0.269	0.625	0.612	0.235	0.242	0.158	0.075	0.479	0.499	0.362	0.613	0.267	0.337	0.441	0.212	0.180	0.314	0.077	0.074	1.240	4.339	0.361	0.389	0.024	0.092	0.004	0.068	0.326	0.097	0.043	0.066	0.071	1.055
3513	chr17	68648782	68666892	+	0	NA	Intergenic	Intergenic	492161	NM_000891	3759	Hs.1547	NM_000891	ENSG00000123700	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	potassium voltage-gated channel subfamily J member 2	protein-coding	0.996	nan	0.763	0.274	0.324	0.186	0.614	0.146	0.141	1.259	0.638	0.560	0.628	0.030	0.080	1.060	1.513	0.255	0.248	0.376	0.425	2.195	0.730	0.237	0.240	1.190	nan	1.407	1.326	0.491	0.235	0.175	0.396	3.956	2.764	0.143	0.251	0.949	0.542	0.040	0.128	0.539	0.101	0.614	0.560	0.061	0.033	0.105	0.065
5737	chr3	182831104	182836413	+	0	NA	Intergenic	MER51E|LTR|ERV1	-16383	NM_001293273	56922	Hs.47649	NM_020166	ENSG00000078070	MCCC1	MCC-B|MCCA	methylcrotonoyl-CoA carboxylase 1	protein-coding	1.136	2.257	1.707	3.028	7.199	3.766	2.204	0.057	0.152	2.339	2.167	8.420	7.180	0.256	0.072	0.786	1.226	0.354	0.357	12.169	8.814	9.852	3.321	1.506	2.120	0.593	0.816	5.503	7.416	3.545	5.085	0.582	1.040	2.332	1.077	0.291	0.454	2.867	1.795	4.956	5.026	0.180	1.954	2.204	8.420	0.182	0.727	0.281	0.095
8258	chr9	123677507	123699888	+	0	NA	intron (NM_001190945, intron 2 of 8)	intron (NM_001190945, intron 2 of 8)	476	NM_005658	7185	Hs.531251	NM_005658	ENSG00000056558	TRAF1	EBI6|MGC:10353	TNF receptor associated factor 1	protein-coding	nan	nan	1.335	0.743	0.722	0.393	0.297	0.798	0.130	0.375	0.203	0.616	nan	0.388	0.082	0.360	0.571	0.346	0.762	1.055	1.368	0.720	0.283	0.644	0.742	1.127	nan	1.334	1.514	1.441	1.230	0.362	0.518	0.594	0.524	1.778	5.741	nan	0.799	1.005	0.244	0.103	0.138	0.297	0.616	0.249	0.880	0.071	2.301
4029	chr19	35605079	35616211	+	0	NA	intron (NM_001136009, intron 4 of 5)	AluJo|SINE|Alu	-2959	NR_106947	102466205		NR_106947	ENSG00000089356	MIR6887	hsa-mir-6887	microRNA 6887	ncRNA	2.605	3.387	3.605	1.110	0.153	0.158	0.137	0.266	0.073	0.252	0.247	0.415	3.706	0.360	0.087	0.226	0.168	0.600	0.947	0.284	0.377	0.852	0.217	0.227	0.278	0.613	1.099	0.150	0.177	4.973	4.982	1.067	1.287	5.576	5.033	2.034	6.280	2.185	1.219	0.255	0.087	2.870	0.007	0.137	0.415	1.290	0.174	0.406	2.517
91	chr1	14587870	14619084	+	0	NA	Intergenic	L1ME3D|LINE|L1	-321736	NM_015209	23254	Hs.368823	NM_015209	ENSG00000189337	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding	0.696	0.852	nan	0.337	1.673	0.996	0.196	0.074	0.065	0.076	0.085	0.428	0.582	0.038	0.114	0.663	0.510	0.421	0.606	0.525	0.661	1.616	0.718	0.454	nan	0.215	nan	3.519	2.240	nan	0.279	0.326	0.451	0.099	0.104	0.261	0.435	0.842	0.565	0.083	0.154	0.022	0.023	0.196	0.428	0.081	0.042	0.142	0.035
2137	chr12	109946909	109968643	+	0	NA	intron (NM_183415, intron 19 of 27)	L3|LINE|CR1	42348	NM_183415	89910	Hs.374067	NM_130466	ENSG00000151148	UBE3B	BPIDS|KOS	ubiquitin protein ligase E3B	protein-coding	1.227	0.858	nan	0.802	0.380	0.151	0.255	0.192	0.111	0.395	0.301	0.104	0.555	0.131	0.095	0.376	0.468	0.345	0.504	0.731	0.893	0.549	0.224	0.539	0.474	0.392	0.677	2.673	2.835	4.543	4.366	0.274	0.438	0.126	0.222	1.099	2.103	0.993	0.735	0.690	2.873	0.035	0.121	0.255	0.104	1.130	0.331	0.073	0.384
7933	chr8	129363291	129371409	+	0	NA	Intergenic	L2a|LINE|L2	204988	NR_031613	100302281		NR_031613	ENSG00000221261	MIR1208	MIRN1208|hsa-mir-1208	microRNA 1208	ncRNA	nan	nan	nan	0.119	0.314	0.118	0.112	0.177	0.025	0.077	0.062	0.119	nan	0.107	0.061	6.614	8.284	0.637	0.384	0.438	0.566	0.684	0.194	nan	nan	1.180	1.660	1.513	1.469	1.478	1.691	0.128	0.182	0.359	0.432	0.205	0.407	0.224	0.262	0.027	0.089	0.024	0.491	0.112	0.119	0.298	0.189	0.036	0.075
4116	chr19	48268977	48283961	+	0	NA	Intergenic	L2a|LINE|L2	-4372	NR_132382	106144593	Hs.421907	NR_132382	ENSG00000269656	GLTSCR2-AS1	-	GLTSCR2 antisense RNA 1	ncRNA	1.536	2.586	1.477	2.498	5.580	3.050	1.236	0.452	0.237	1.398	0.747	3.959	3.840	1.955	0.150	1.145	1.567	1.317	1.981	3.095	3.867	5.545	3.467	2.204	2.313	0.822	1.325	4.759	6.892	1.913	1.610	1.368	1.896	1.918	1.615	1.365	2.440	3.167	1.771	1.780	1.761	0.310	0.217	1.236	3.959	0.355	0.834	0.399	0.926
467	chr1	116913912	116962366	+	0	NA	intron (NM_001160233, intron 13 of 22)	intron (NM_001160233, intron 13 of 22)	12147	NM_001160234	476	Hs.371889	NM_000701	ENSG00000163399	ATP1A1	-	ATPase Na+/K+ transporting subunit alpha 1	protein-coding	nan	1.372	1.349	0.788	0.756	0.430	0.759	0.861	0.146	0.245	0.169	0.745	1.982	0.491	0.111	0.984	1.215	3.381	5.722	1.559	nan	1.242	0.544	0.983	0.950	1.298	1.769	1.356	1.794	1.500	1.582	1.450	2.830	0.369	0.315	0.940	1.762	1.022	0.640	1.362	1.117	0.103	0.723	0.759	0.745	0.345	0.371	0.868	0.394
7146	chr7	7592136	7622271	+	0	NA	intron (NM_019005, intron 1 of 12)	intron (NM_019005, intron 1 of 12)	587	NM_019005	54468	Hs.520215	NM_019005	ENSG00000164654	MIOS	MIO|Sea4	meiosis regulator for oocyte development	protein-coding	2.350	1.863	1.914	0.532	0.958	0.485	0.686	0.489	0.155	0.417	0.378	2.531	nan	0.425	0.163	1.128	1.075	1.424	nan	1.099	1.216	nan	0.622	2.112	2.138	0.956	1.230	nan	1.209	0.858	0.707	0.514	0.779	1.098	1.440	2.441	5.780	0.923	0.472	0.195	0.253	0.350	0.655	0.686	2.531	0.135	0.346	0.164	2.201
8001	chr8	145548947	145562876	+	0	NA	3' UTR (NM_031309, exon 2 of 2)	3' UTR (NM_031309, exon 2 of 2)	4032	NM_031309	83482	Hs.31746	NM_031309	ENSG00000261678	SCRT1	SCRT|ZNF898	scratch family transcriptional repressor 1	protein-coding	3.188	1.509	nan	2.491	2.111	1.251	1.784	0.362	0.116	0.394	0.191	2.558	7.498	0.870	0.047	1.757	3.001	0.876	1.281	nan	4.283	nan	0.893	1.351	1.262	1.268	1.883	1.062	1.930	2.778	2.851	1.568	3.079	1.309	1.070	1.915	2.622	0.832	0.490	2.972	3.283	0.240	0.763	1.784	2.558	0.871	2.203	1.132	0.831
563	chr1	154904197	154936884	+	0	NA	intron (NM_001317734, intron 5 of 9)	intron (NM_001317734, intron 5 of 9)	-5414	NM_001323012	10654	Hs.30954	NM_006556	ENSG00000163344	PMVK	HUMPMKI|PMK|PMKA|PMKASE|POROK1	phosphomevalonate kinase	protein-coding	nan	nan	2.997	1.206	1.793	0.952	2.429	1.143	0.212	1.035	0.556	1.726	5.880	1.709	0.098	4.070	5.722	4.216	5.156	4.410	nan	2.733	1.864	2.641	2.923	2.134	2.766	3.171	4.640	3.044	2.787	6.500	9.073	1.796	1.894	2.483	3.276	1.560	0.950	1.347	2.275	0.304	1.008	2.429	1.726	0.417	1.721	4.956	0.867
2919	chr15	67122537	67147751	+	0	NA	Intergenic	CpG	113709	NR_135687	102723481	Hs.512978	NR_135687	ENSG00000259289	LOC102723481	-	uncharacterized LOC102723481	ncRNA	0.770	0.790	nan	0.101	0.318	0.155	0.418	1.204	0.159	0.092	0.124	0.252	0.617	0.167	0.075	0.292	0.224	1.629	7.561	0.320	0.349	nan	0.143	0.302	0.260	0.336	0.657	0.249	0.316	0.584	0.353	0.318	0.352	0.183	0.274	0.203	0.287	0.364	0.321	0.044	0.077	0.045	0.063	0.418	0.252	0.050	0.093	0.049	0.049
3248	chr17	4701984	4711852	+	0	NA	Intergenic	AluY|SINE|Alu	-3478	NM_001243108	5338	Hs.104519	NM_002663	ENSG00000129219	PLD2	PLD1C	phospholipase D2	protein-coding	1.475	0.725	1.139	0.470	0.693	0.406	0.824	0.342	0.133	0.160	0.153	0.636	1.487	0.824	0.169	0.969	1.271	1.090	1.618	1.219	1.150	1.397	0.359	0.863	0.899	0.619	1.137	3.272	3.713	0.694	0.596	0.300	0.423	0.260	0.247	0.840	1.157	0.502	0.234	0.459	0.450	0.049	0.128	0.824	0.636	0.512	5.148	0.122	0.203
6915	chr6	114745325	114754518	+	0	NA	Intergenic	Intergenic	-365880	NM_153612	222537	Hs.645477	NM_153612	ENSG00000249853	HS3ST5	3-OST-5|3OST5|HS3OST5|NBLA04021	heparan sulfate-glucosamine 3-sulfotransferase 5	protein-coding	nan	0.560	nan	0.098	0.546	0.262	0.250	0.089	0.006	0.120	0.132	0.199	0.208	0.047	0.128	0.397	0.344	0.166	0.211	0.345	nan	nan	0.066	0.176	0.278	1.562	nan	0.409	0.371	8.116	6.622	0.130	0.180	0.246	0.292	0.661	nan	0.230	0.315	0.024	0.049	0.061	0.089	0.250	0.199	0.971	0.043	0.033	0.282
7334	chr7	76007920	76039980	+	0	NA	intron (NM_080744, intron 7 of 10)	AluSx1|SINE|Alu	-2891	NM_007155	7784	Hs.656137	NM_007155	ENSG00000188372	ZP3	ZP3A|ZP3B|ZPC|Zp-3	zona pellucida glycoprotein 3	protein-coding	nan	0.911	1.283	0.699	0.586	0.331	0.610	0.683	0.390	0.502	0.376	0.681	0.812	1.122	0.164	0.848	0.908	0.732	nan	0.942	0.908	2.385	0.660	0.875	0.854	0.465	nan	0.704	nan	1.297	1.044	0.699	0.865	1.048	1.276	2.176	5.795	1.741	1.086	0.164	0.878	0.184	0.591	0.610	0.681	0.510	0.596	0.144	1.157
6851	chr6	76309934	76313973	+	0	NA	5' UTR (NM_001304792, exon 1 of 15)	5' UTR (NM_001304792, exon 1 of 15)	728	NM_001100409	26054	Hs.485784	NM_015571	ENSG00000112701	SENP6	SSP1|SUSP1	SUMO1/sentrin specific peptidase 6	protein-coding	8.247	nan	6.000	8.310	6.968	4.082	9.801	5.016	0.479	2.875	1.501	12.119	10.388	7.237	0.189	12.970	13.777	10.667	14.101	14.590	17.216	11.828	8.771	23.402	24.604	4.823	5.800	8.168	13.387	15.545	15.238	10.429	18.649	9.206	8.671	10.905	8.334	3.087	1.911	5.843	5.419	1.793	6.397	9.801	12.119	2.238	3.570	4.350	3.286
68	chr1	9444302	9520502	+	0	NA	Intergenic	Intergenic	6573	NR_104623	100506022	Hs.131775	NR_104622		LOC100506022	-	uncharacterized LOC100506022	ncRNA	1.379	nan	1.035	1.518	0.311	0.156	0.243	0.448	0.195	0.233	0.123	0.063	0.738	0.152	0.100	0.375	0.388	0.337	0.552	0.945	0.890	0.150	0.073	0.476	0.557	0.385	nan	nan	5.939	nan	1.012	0.246	0.273	0.112	0.098	0.847	2.281	0.479	0.487	0.925	0.331	0.026	0.209	0.243	0.063	0.341	0.803	0.067	0.608
2514	chr14	29628420	29638150	+	0	NA	Intergenic	Intergenic	-378292	NR_135255	105370424	Hs.375809	NR_135255	ENSG00000257056	LOC105370424	-	uncharacterized LOC105370424	ncRNA	1.264	0.872	0.686	0.171	0.097	0.066	0.158	0.983	0.201	0.113	0.060	0.318	0.397	0.034	0.113	0.216	0.149	0.190	0.216	0.460	0.579	1.574	0.524	0.076	0.176	8.847	9.624	0.421	0.387	0.615	0.291	0.130	0.141	2.059	3.196	0.234	0.580	0.604	0.476	0.057	0.118	0.548	0.183	0.158	0.318	0.069	0.105	0.040	0.075
5338	chr3	20205743	20229020	+	0	NA	intron (NR_131179, intron 4 of 6)	intron (NR_131179, intron 4 of 6)	1603	NR_132785	100874028	Hs.105153	NR_046723	ENSG00000231304	SGO1-AS1	SGOL1-AS1	SGO1 antisense RNA 1	ncRNA	1.137	1.145	1.510	0.464	0.572	0.241	0.286	0.486	0.187	0.362	0.261	0.386	1.175	0.546	0.093	0.825	1.016	1.617	2.005	2.312	3.037	1.051	0.490	3.210	3.240	1.077	1.324	1.065	1.463	nan	2.669	0.498	0.970	0.700	0.613	1.659	3.877	0.592	0.444	0.274	0.530	0.135	0.279	0.286	0.386	0.159	0.257	0.247	1.651
7209	chr7	26104004	26145661	+	0	NA	Intergenic	AluSx|SINE|Alu	-67015	NM_004289	9603	Hs.404741	NM_004289	ENSG00000050344	NFE2L3	NRF3	nuclear factor, erythroid 2 like 3	protein-coding	1.564	1.059	1.495	0.141	0.335	0.185	0.852	0.104	0.127	0.136	0.143	0.132	0.450	0.104	0.159	0.624	0.490	0.245	nan	0.432	0.566	1.131	0.352	0.432	0.481	0.646	0.962	0.475	0.546	1.295	1.025	0.230	0.288	0.151	0.197	1.149	nan	0.394	0.401	0.164	0.158	0.039	0.130	0.852	0.132	0.102	0.042	0.055	1.305
5081	chr21	27537991	27544496	+	0	NA	intron (NM_001136131, intron 1 of 15)	intron (NM_001136131, intron 1 of 15)	1895	NM_000484	351	Hs.434980	NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2	amyloid beta precursor protein	protein-coding	4.485	2.452	4.488	4.488	5.078	2.562	3.352	2.385	0.173	2.749	1.285	4.550	12.797	2.699	0.092	6.151	8.320	4.036	8.177	8.498	7.251	6.993	3.327	9.009	8.712	6.025	7.422	6.619	11.526	6.549	8.165	3.118	7.220	5.896	4.448	3.675	nan	5.713	2.555	2.045	0.822	1.175	1.618	3.352	4.550	1.579	1.869	1.612	0.983
5934	chr4	74122269	74126497	+	0	NA	exon (NM_015574, exon 1 of 34)	exon (NM_015574, exon 1 of 34)	132	NM_198889	26057	Hs.601206	NM_015574	ENSG00000132466	ANKRD17	GTAR|MASK2|NY-BR-16	ankyrin repeat domain 17	protein-coding	6.080	3.036	3.951	7.525	6.041	3.027	4.543	3.835	0.380	1.579	0.923	5.930	8.481	4.239	0.151	8.282	9.449	9.202	12.403	8.688	7.177	10.031	5.468	23.944	24.379	3.968	4.951	13.530	19.641	11.642	13.120	3.126	6.260	4.557	5.266	7.640	6.568	2.958	1.588	2.910	6.317	0.945	3.734	4.543	5.930	0.900	3.968	1.243	1.896
7164	chr7	12498244	12530428	+	0	NA	Intergenic	Intergenic	-21719	NR_136261	102725191	Hs.602382	NR_136261	ENSG00000226690	LOC102725191	-	uncharacterized LOC102725191	ncRNA	nan	1.001	nan	0.232	0.677	0.380	0.100	0.137	0.105	0.228	0.185	0.210	0.327	0.071	0.169	nan	1.833	0.509	0.329	0.600	0.850	0.756	0.270	5.759	5.646	1.397	1.562	0.739	0.646	0.312	0.146	2.090	3.715	0.165	0.348	0.288	0.421	1.012	0.624	0.024	0.094	0.066	0.123	0.100	0.210	0.051	0.126	3.996	0.058
5961	chr4	83347831	83354387	+	0	NA	promoter-TSS (NM_001292017)	promoter-TSS (NM_001292017)	269	NM_031372	9987	Hs.527105	NM_005463	ENSG00000152795	HNRNPDL	HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|laAUF1	heterogeneous nuclear ribonucleoprotein D like	protein-coding	5.321	2.498	3.740	4.718	7.648	4.140	5.723	2.601	0.440	2.540	0.915	7.466	8.722	3.985	0.125	7.359	6.353	8.439	10.681	10.648	8.686	10.294	5.552	15.196	15.494	2.901	nan	10.444	15.315	8.796	11.028	3.036	5.951	6.190	5.402	7.684	nan	2.475	1.547	4.701	7.005	1.151	3.774	5.723	7.466	0.993	3.328	1.143	1.916
3807	chr18	48266736	48288114	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	69009	NM_001127176	83876	Hs.30495	NM_031939	ENSG00000134042	MRO	B29|C18orf3	maestro	protein-coding	nan	0.980	1.172	0.127	0.337	0.158	1.261	0.091	0.045	0.059	0.085	0.219	0.406	0.033	0.079	0.450	0.316	0.264	0.404	0.505	0.555	5.284	1.388	0.132	0.133	0.141	0.266	0.452	0.572	0.823	0.627	0.196	0.272	3.107	2.829	1.411	6.145	2.165	1.722	0.248	0.262	0.903	0.297	1.261	0.219	0.085	0.052	0.152	2.288
222	chr1	38057610	38062997	+	0	NA	intron (NM_013285, intron 1 of 15)	AluSx1|SINE|Alu	1283	NM_001323624	29889	Hs.75528	NM_013285	ENSG00000134697	GNL2	HUMAUANTIG|NGP1|Ngp-1|Nog2|Nug2	G protein nucleolar 2	protein-coding	2.301	nan	1.735	3.482	1.012	0.564	1.199	1.282	0.148	1.386	0.704	1.939	3.234	2.040	0.221	1.163	1.319	1.729	2.839	2.746	3.312	nan	0.693	3.417	3.803	2.910	3.802	12.746	15.376	nan	1.988	2.360	4.042	1.168	1.186	2.169	3.325	1.932	nan	0.850	0.753	0.178	0.444	1.199	1.939	0.381	0.716	0.990	0.666
3995	chr19	18389384	18405927	+	0	NA	Intergenic	L2b|LINE|L2	4768	NR_036155	100422833		NR_036155	ENSG00000267959	MIR3188	mir-3188	microRNA 3188	ncRNA	4.921	2.900	4.867	3.094	4.028	2.035	3.131	1.808	0.359	2.191	0.873	4.008	4.646	3.852	0.172	2.351	3.787	2.865	4.401	6.751	6.054	5.965	3.384	8.186	8.279	2.799	3.654	5.703	7.167	5.697	6.520	1.264	2.001	4.933	3.622	6.480	7.764	2.383	1.501	3.050	2.241	1.042	1.530	3.131	4.008	0.904	2.416	0.891	2.755
6322	chr5	71984075	71992140	+	0	NA	Intergenic	Intergenic	-31611	NR_105007	102477328	Hs.254516	NR_105007	ENSG00000248371	LINC02056	-	long intergenic non-protein coding RNA 2056	ncRNA	0.870	nan	0.651	0.032	8.055	4.036	1.767	0.138	0.040	0.117	0.152	0.416	0.625	0.053	0.072	0.227	0.306	0.210	0.241	0.916	0.839	nan	0.134	0.161	0.116	0.973	nan	0.277	0.257	0.379	0.261	0.148	0.189	0.340	0.470	0.349	1.045	0.694	0.413	0.097	1.566	0.059	1.746	1.767	0.416	0.145	0.076	0.036	0.138
2911	chr15	65697429	65715327	+	0	NA	intron (NM_020962, intron 1 of 19)	intron (NM_020962, intron 1 of 19)	9032	NM_020962	57722	Hs.458607	NM_020962	ENSG00000103742	IGDCC4	DDM36|NOPE	immunoglobulin superfamily DCC subclass member 4	protein-coding	1.417	0.948	nan	0.115	0.372	0.249	0.718	0.179	0.099	0.229	0.166	0.308	0.606	0.408	0.071	0.630	0.950	0.486	0.897	0.689	0.698	nan	0.318	0.417	0.465	0.760	1.111	0.473	0.527	3.399	2.982	0.605	0.857	0.175	0.214	2.540	5.862	0.495	0.400	0.062	0.154	0.053	0.406	0.718	0.308	0.250	0.295	0.282	1.055
3132	chr16	48999220	49007259	+	0	NA	Intergenic	AluSz|SINE|Alu	312503	NM_004352	869	Hs.458423	NM_004352	ENSG00000102924	CBLN1	-	cerebellin 1 precursor	protein-coding	0.859	0.655	0.770	0.034	0.895	0.340	3.125	0.083	0.099	0.038	0.114	0.955	0.291	0.013	0.042	0.301	0.164	0.091	0.206	3.583	3.071	0.067	0.022	0.120	0.145	0.307	0.420	0.719	0.942	0.662	1.177	0.137	0.147	0.374	0.490	0.216	0.770	0.292	0.362	0.228	0.221	0.078	0.533	3.125	0.955	1.567	0.348	0.013	0.185
8313	chr9	135988336	136026008	+	0	NA	promoter-TSS (NM_001271774)	promoter-TSS (NM_001271774)	-628	NM_001271774	5900	Hs.106185	NM_006266	ENSG00000160271	RALGDS	RGDS|RGF|RalGEF	ral guanine nucleotide dissociation stimulator	protein-coding	nan	2.720	3.453	3.202	0.964	0.464	1.070	0.473	0.121	1.470	0.692	1.645	3.883	0.373	0.067	1.116	1.971	1.151	2.048	2.610	2.990	nan	1.163	1.257	1.261	0.516	0.993	3.782	6.474	2.802	3.585	0.677	0.929	2.283	1.649	0.875	1.115	2.325	1.512	1.501	0.812	0.366	0.226	1.070	1.645	0.879	1.207	0.299	0.270
1526	chr11	75036776	75064424	+	0	NA	intron (NM_020251, intron 1 of 14)	intron (NM_020251, intron 1 of 14)	-4370	NR_029891	442900		NR_029891	ENSG00000199090	MIR326	MIRN326|hsa-mir-326|mir-326	microRNA 326	ncRNA	nan	2.053	1.412	0.603	0.439	0.313	0.576	0.131	0.058	0.249	0.161	0.696	1.731	0.421	0.109	2.536	3.737	0.543	0.914	1.009	1.024	2.045	0.561	2.240	2.507	1.399	2.337	2.884	2.967	1.321	1.131	3.241	6.176	0.437	0.561	0.792	2.124	0.638	0.503	2.352	1.116	0.145	0.135	0.576	0.696	0.539	1.195	6.277	0.633
6506	chr5	148761683	148787733	+	0	NA	intron (NM_001317987, intron 1 of 2)	L1PA15|LINE|L1	9057	NM_001317987	27190	Hs.156979	NM_014443	ENSG00000127743	IL17B	IL-17B|IL-20|NIRF|ZCYTO7	interleukin 17B	protein-coding	nan	0.847	0.934	0.041	0.215	0.132	0.066	1.073	0.338	0.055	0.051	0.106	0.391	0.071	0.101	0.182	0.185	0.297	0.415	0.218	0.280	0.343	0.121	0.240	0.175	0.243	0.445	0.379	0.407	0.413	0.261	0.216	0.274	0.135	0.181	1.004	3.812	0.291	0.258	0.011	0.102	0.025	0.137	0.066	0.106	0.045	0.108	0.062	2.801
217	chr1	37491643	37545879	+	0	NA	Intergenic	Intergenic	-18917	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	glutamate ionotropic receptor kainate type subunit 3	protein-coding	1.303	nan	1.704	0.138	1.643	0.829	0.775	0.069	0.086	0.272	0.199	1.770	5.848	0.106	0.097	0.288	0.229	0.109	0.107	3.389	2.976	nan	0.430	0.138	0.118	1.372	2.176	2.660	3.608	nan	1.261	0.630	0.676	0.593	0.498	1.055	3.150	2.701	nan	6.597	1.033	0.198	0.284	0.775	1.770	0.479	0.086	0.117	1.169
3245	chr17	3779599	3799030	+	0	NA	intron (NM_172207, intron 1 of 15)	intron (NM_172207, intron 1 of 15)	4723	NM_172206	84254	Hs.8417	NM_032294	ENSG00000004660	CAMKK1	CAMKKA	calcium/calmodulin dependent protein kinase kinase 1	protein-coding	2.910	0.825	1.507	1.283	1.636	0.841	1.331	0.109	0.091	0.110	0.084	1.160	1.205	0.373	0.098	2.903	4.057	0.533	0.728	0.954	0.772	1.838	0.516	1.072	1.104	2.070	3.450	6.290	9.548	5.162	5.452	0.700	0.970	0.847	0.780	4.162	8.259	0.637	0.435	1.641	1.158	0.083	0.266	1.331	1.160	1.783	2.945	0.503	2.167
7143	chr7	5786483	5808459	+	0	NA	intron (NM_207111, intron 2 of 16)	L1ME1|LINE|L1	23890	NM_207111	54476	Hs.487458	NM_019011	ENSG00000011275	RNF216	CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN	ring finger protein 216	protein-coding	1.588	1.014	1.369	0.140	0.322	0.161	0.234	0.293	0.194	0.142	0.173	0.186	nan	0.148	0.177	1.733	1.421	1.242	nan	0.493	0.548	nan	0.214	0.784	0.850	3.160	4.143	nan	0.478	0.583	0.337	0.284	0.513	0.405	1.097	0.871	1.409	0.478	0.437	0.063	0.102	0.087	0.122	0.234	0.186	0.048	0.106	0.126	0.278
158	chr1	27234288	27250234	+	0	NA	Intergenic	Intergenic	-1694	NM_021969	8431	Hs.427055	NM_021969	ENSG00000131910	NR0B2	SHP|SHP1	nuclear receptor subfamily 0 group B member 2	protein-coding	1.979	1.373	nan	6.115	2.706	1.317	0.964	0.390	0.162	1.525	0.669	1.268	4.430	0.506	0.101	1.028	1.036	1.002	1.431	4.912	5.891	3.309	1.346	1.823	2.030	1.335	1.977	6.450	7.868	1.782	1.740	1.149	2.024	1.165	1.264	1.749	1.635	2.675	1.365	3.705	3.411	0.216	0.263	0.964	1.268	0.388	1.145	0.230	0.302
6415	chr5	120482873	120490090	+	0	NA	Intergenic	Intergenic	-171764	NR_104999	102467226		NR_104999		LOC102467226	-	uncharacterized LOC102467226	ncRNA	nan	0.630	0.585	0.085	0.138	0.067	0.018	0.094	0.113	0.044	0.092		0.161	0.046	0.086	0.307	0.171	6.503	nan	0.143	0.141	0.061	0.052	0.111	0.179	0.189	0.256	0.155	0.176	0.598	0.354	0.055	0.109	0.146	0.106	0.238	0.333	0.121	0.220	0.023	0.024	0.027		0.018			0.070	0.002	0.034
3658	chr18	8682962	8691120	+	0	NA	Intergenic	MIRb|SINE|MIR	20578	NR_120598	100287082	Hs.439434	NR_120598	ENSG00000265962	GACAT2	MTCL1-AS1|MTCL1AS1	gastric cancer associated transcript 2 (non-protein coding)	ncRNA	4.273	2.671	3.408	0.874	2.916	1.261	4.735	0.321	0.118	0.520	0.349	0.496	nan	0.040	0.139	0.603	0.729	0.466	0.477	1.296	1.682	nan	1.477	0.335	0.366	4.079	nan	1.357	1.958	nan	8.263	0.431	0.790	9.931	9.244	0.251	nan	nan	1.983	11.397	1.014	3.620	0.872	4.735	0.496	3.131	0.450	0.846	0.169
36	chr1	3690356	3696069	+	0	NA	TTS (NM_001288583)	TTS (NM_001288583)	3861	NM_001163724	388588	Hs.22047	NM_001163724	ENSG00000235169	SMIM1	Vel	small integral membrane protein 1 (Vel blood group)	protein-coding	1.394	nan	2.198	0.735	0.438	0.232	0.225	0.235	0.028	0.383	0.257	0.167	1.670	0.133	0.143	0.772	1.193	0.338	0.396	2.052	1.756	1.067	0.273	0.893	0.819	0.553	nan	nan	2.301	nan	0.403	0.514	0.696	0.443	0.183	0.667	0.554	1.640	1.307	9.957	0.765	0.066	0.126	0.225	0.167	0.695	0.531	0.329	0.130
1418	chr11	48068572	48089504	+	0	NA	intron (NM_002843, intron 1 of 24)	LTR79|LTR|ERVL	-39296	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA	nan	1.326	1.019	0.064	0.477	0.176	0.557	0.329	0.171	0.149	0.136	0.160	1.002	0.232	0.132	0.895	0.927	1.241	4.741	0.559	0.615	0.471	0.220	0.606	0.570	0.568	0.969	0.602	0.726	0.438	0.194	0.761	1.205	0.126	0.154	0.414	nan	0.740	0.588	0.346	0.281	0.041	0.143	0.557	0.160	0.108	0.053	0.297	0.206
472	chr1	117771814	117782626	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	-23638	NR_045604	79679	Hs.546434	NM_024626	ENSG00000134258	VTCN1	B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1	V-set domain containing T cell activation inhibitor 1	protein-coding	nan	1.271	0.767	0.138	0.252	0.030	0.248	0.128	0.092	0.160	0.119	0.077	1.197	0.030	0.087	0.221	0.298	4.519	12.356	0.360	nan	0.246	0.130	0.119	0.158	2.194	2.454	0.423	0.325	0.350	0.158	0.273	0.436	0.776	1.291	0.312	0.370	0.927	0.714	0.253	0.501	0.236	1.100	0.248	0.077	0.035	0.028	0.310	0.079
1368	chr11	32193415	32211071	+	0	NA	Intergenic	L1ME4a|LINE|L1	-36785	NR_132770	106635521		NR_132770		SNORA88	-	small nucleolar RNA, H/ACA box 88	snoRNA	0.773	0.742	nan	0.110	2.183	0.911	0.288	0.110	0.145	0.098	0.154	0.068	0.308	0.063	0.114	0.489	0.292	0.563	0.736	0.285	0.350	0.277	0.132	0.294	0.313	3.928	3.856	0.133	0.133	0.447	0.226	0.288	0.486	0.232	0.261	0.228	nan	0.951	0.662	0.025	0.050	0.070	0.063	0.288	0.068	0.313	0.023	0.070	0.066
7875	chr8	110141765	110149386	+	0	NA	Intergenic	Intergenic	45922	NM_003301	7201	Hs.3022	NM_003301	ENSG00000174417	TRHR	TRH-R	thyrotropin releasing hormone receptor	protein-coding	nan	nan	1.114	0.239	0.344	0.105	0.297	0.152	0.064	0.041	0.140	0.063	0.576	0.015	0.114	0.679	0.279	1.720	0.781	0.650	0.492	nan	0.452	19.097	nan	3.798	5.594	0.986	1.006	0.458	0.186	0.272	0.437	0.175	0.145	0.171	0.367	0.493	0.497	0.036	0.326	0.037	0.092	0.297	0.063		0.053	0.219	0.049
132	chr1	21912958	21920984	+	0	NA	Intergenic	Intergenic	61377	NM_001145658	5909	Hs.148178	NM_002885	ENSG00000076864	RAP1GAP	RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP	RAP1 GTPase activating protein	protein-coding	2.823	0.944	nan	0.220	0.602	0.259	0.654	0.103	0.079	0.117	0.103	0.060	1.479	0.147	0.099	0.418	0.658	0.218	0.618	1.396	1.663	0.392	0.180	0.237	0.261	1.144	1.931	0.283	0.633	0.952	1.024	0.160	0.231	0.500	0.960	1.493	2.445	0.865	0.530	0.193	0.144	0.111	0.222	0.654	0.060	2.602	0.031	0.037	0.487
711	chr1	183482299	183489901	+	0	NA	intron (NM_001331007, intron 4 of 23)	intron (NM_001331007, intron 4 of 23)	44594	NM_173156	9887	Hs.591463	NM_014837	ENSG00000116698	SMG7	C1orf16|EST1C|SGA56M	SMG7, nonsense mediated mRNA decay factor	protein-coding	nan	nan	1.218	0.103	0.508	0.359	0.294	0.400	0.275	0.535	0.342	0.206	0.372	0.115	0.117	0.507	0.604	3.580	2.548	0.492	nan	1.080	0.340	nan	0.661	0.794	1.214	0.648	0.417	0.405	0.217	1.963	3.491	3.645	7.633	0.433	nan	0.779	0.623	0.066	0.129	1.226	0.084	0.294	0.206		0.254	4.561	0.081
1791	chr12	6601640	6604442	+	0	NA	promoter-TSS (NM_016497)	promoter-TSS (NM_016497)	-257	NM_014865	9918	Hs.5719	NM_014865	ENSG00000010292	NCAPD2	CAP-D2|CNAP1|hCAP-D2	non-SMC condensin I complex subunit D2	protein-coding	7.386	nan	5.447	14.779	5.623	3.178	4.750	2.322	0.171	3.661	2.352	8.755	16.540	8.145	0.182	4.847	3.919	10.038	14.385	18.770	15.419	18.767	10.492	21.020	21.498	8.442	10.982	7.135	10.612	10.880	10.702	4.114	5.795	10.770	15.284	9.132	11.178	3.152	1.340	6.922	6.667	2.368	6.064	4.750	8.755	7.484	1.982	2.807	3.910
5412	chr3	78943896	78969677	+	0	NA	intron (NM_002941, intron 4 of 30)	intron (NM_002941, intron 4 of 30)	111823	NM_001145845	6091	Hs.744218	NM_002941	ENSG00000169855	ROBO1	DUTT1|SAX3	roundabout guidance receptor 1	protein-coding	0.998	0.617	0.763	0.392	1.393	0.620	0.060	0.397	0.044	1.275	0.946	0.287	0.294	0.094	0.089	0.213	0.158	4.609	nan	0.475	0.532	2.008	0.653	0.121	0.127	0.642	0.772	0.789	0.712	11.515	9.388	0.117	0.157	1.438	2.315	0.716	nan	0.215	0.166	0.008	0.169	0.339	0.181	0.060	0.287	0.120	1.188	0.031	0.363
2180	chr12	121123367	121127178	+	0	NA	promoter-TSS (NM_001303627)	promoter-TSS (NM_001303627)	345	NM_001303628	9761	Hs.744910	NM_014730	ENSG00000110917	MLEC	KIAA0152	malectin	protein-coding	4.328	3.036	2.839	5.770	5.249	3.411	3.504	2.336	0.126	2.475	1.245	5.334	12.291	4.814	0.127	5.533	5.175	5.279	8.368	7.944	7.301	7.785	6.274	8.884	9.848	4.326	4.667	9.752	17.174	4.956	4.968	5.149	7.357	5.463	6.969	5.076	4.530	4.114	1.975	3.353	6.385	1.807	2.896	3.504	5.334	0.962	4.065	3.040	1.773
1428	chr11	59294239	59334407	+	0	NA	Intergenic	MIRb|SINE|MIR	31937	NM_001004711	390199	Hs.553757	NM_001004711	ENSG00000172742	OR4D9	OR11-253	olfactory receptor family 4 subfamily D member 9	protein-coding	1.138	1.031	1.036	0.705	1.144	0.518	0.438	0.694	0.257	0.511	0.437	0.799	2.000	1.413	0.154	0.774	0.834	0.379	0.514	1.049	1.124	2.955	0.683	0.880	0.916	1.397	1.763	1.284	1.684	2.009	1.723	0.616	0.944	1.531	1.643	1.236	3.017	0.896	0.669	0.578	0.864	0.218	0.273	0.438	0.799	0.138	0.235	0.661	0.880
2769	chr14	101051906	101056655	+	0	NA	Intergenic	MIRc|SINE|MIR	-18149	NM_020836	57596	Hs.211751	NM_020836	ENSG00000183092	BEGAIN	-	brain enriched guanylate kinase associated	protein-coding	5.970	2.589	2.841	0.201	2.542	1.286	5.503	0.153	0.132	1.366	0.560	0.653	7.980	2.486	0.072	0.211	0.124	0.077	0.161	3.082	2.453	3.022	0.855	0.066	0.106	4.791	5.741	3.950	5.412	5.098	5.586	0.962	1.352	3.344	2.675	0.683	0.641	1.433	0.915	3.863	0.338	0.805	1.103	5.503	0.653	4.273	1.903	0.397	0.157
7700	chr8	61892885	61938375	+	0	NA	Intergenic	Intergenic	-35323	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA	2.231	1.040	2.116	1.183	1.611	0.888	0.646	0.063	0.071	1.779	0.969	1.178	1.198	0.026	0.071	0.366	0.496	0.293	0.413	1.621	1.671	2.939	0.819	0.113	0.121	0.614	nan	1.354	1.051	nan	0.853	0.271	0.460	3.824	3.422	0.444	1.102	5.130	2.383	0.285	0.195	1.041	0.408	0.646	1.178	12.991	3.539	0.214	0.344
4081	chr19	42615300	42621544	+	0	NA	intron (NM_001207025, intron 5 of 13)	intron (NM_001207025, intron 5 of 13)	18203	NM_001207025	5452	Hs.147381	NM_002698	ENSG00000028277	POU2F2	OCT2|OTF2|Oct-2	POU class 2 homeobox 2	protein-coding	1.831	0.781	1.710	0.183	2.682	1.413	0.369	0.189	0.052	0.101	0.077	1.437	1.067	0.017	0.130	2.200	2.744	0.257	0.184	2.445	2.419	3.344	0.796	0.216	0.237	0.405	0.767	3.263	3.191	2.441	2.133	2.006	2.835	0.415	0.295	2.016	6.303	1.735	1.001	3.219	8.462	0.045	0.889	0.369	1.437	0.232	0.205	1.634	2.403
4992	chr20	48954942	49000484	+	0	NA	Intergenic	Intergenic	-39834	NR_109950	101927586	Hs.637665	NR_109950	ENSG00000233077	LINC01271	-	long intergenic non-protein coding RNA 1271	ncRNA	nan	nan	1.283	0.780	0.452	0.202	0.385	0.644	0.135	0.135	0.136	0.371	6.236	0.100	0.103	0.719	0.877	0.445	1.429	0.576	0.581	nan	0.544	0.512	0.610	0.523	0.930	3.171	3.057	nan	0.714	0.513	0.501	0.147	0.247	0.381	0.500	1.141	0.752	0.797	0.215	0.017	0.076	0.385	0.371	0.312	0.917	0.167	0.077
2279	chr13	40022521	40143427	+	0	NA	intron (NM_005780, intron 2 of 3)	L1ME1|LINE|L1	94382	NM_005780	10186	Hs.507798	NM_005780	ENSG00000183722	LHFP	-	lipoma HMGIC fusion partner	protein-coding	0.929	1.298	0.936	0.444	0.220	0.131	0.181	0.247	0.088	0.318	0.167	1.078	0.563	2.491	0.084	0.572	0.406	0.373	0.553	0.741	0.962	3.909	1.317	0.141	0.152	1.609	1.971	0.528	0.476	0.506	0.291	0.388	0.812	0.395	0.541	0.680	1.799	0.769	0.488	0.348	0.113	0.087	0.046	0.181	1.078	0.013	0.075	0.377	0.435
5696	chr3	177181090	177199655	+	0	NA	intron (NR_047568, intron 1 of 3)	L1ME4a|LINE|L1	30663	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA	1.194	1.267	0.826	0.279	0.956	0.492	0.643	1.493	0.445	0.168	0.230	0.295	0.320	0.058	0.141	0.263	0.223	1.416	6.064	0.425	0.476	1.302	0.392	0.254	0.268	0.649	0.943	0.538	0.474	0.685	0.293	0.173	0.338	0.224	0.240	0.343	0.715	0.793	0.560	0.059	0.105	0.026	0.219	0.643	0.295	0.088	0.467	0.134	0.135
6126	chr5	1149850	1162291	+	0	NA	Intergenic	CpG	22650	NR_109911	101928857	Hs.593732	NR_109911	ENSG00000249201	CTD-3080P12.3	-	uncharacterized LOC101928857	ncRNA	0.652	1.270	3.205	0.646	0.515	0.189	0.533	0.434	0.151	0.841	0.803	1.045	1.391	0.052	0.087	0.521	0.907	0.658	nan	2.192	1.632	4.131	1.107	0.089	0.118	0.186	0.373	nan	3.788	nan	0.520	0.568	0.444	0.589	0.686	0.134	0.134	3.241	nan	0.954	0.347	0.159	0.087	0.533	1.045	0.167	0.289	0.167	0.043
998	chr10	3844395	3856968	+	0	NA	Intergenic	Intergenic	-23208	NM_001160124	1316	Hs.4055	NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel like factor 6	protein-coding	0.528	3.044	0.778	1.389	4.337	2.269	1.519	3.437	0.420	2.230	0.529	1.664	2.641	8.750	0.228	0.453	0.534	1.145	3.043	0.590	0.586	9.678	5.751	0.138	0.171	0.274	0.454	2.934	3.592	0.188	0.066	0.183	0.283	0.943	1.885	0.265	0.438	3.238	1.822	0.022	0.579	0.105	0.088	1.519	1.664	0.023	0.622	0.058	0.040
6792	chr6	46290004	46296955	+	0	NA	5' UTR (NM_005822, exon 1 of 4)	5' UTR (NM_005822, exon 1 of 4)	150	NM_005822	10231	Hs.440168	NM_005822	ENSG00000172348	RCAN2	CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4	regulator of calcineurin 2	protein-coding	1.404	2.820	0.719	0.400	1.194	0.713	1.989	0.236	0.089	0.658	0.427	0.103	3.190	0.031	0.145	0.741	0.444	0.341	0.591	0.773	0.655	0.215	0.131	0.315	0.388	0.133	0.298	1.187	nan	0.420	0.197	0.364	0.392	7.988	8.208	0.117	0.258	1.511	0.821	0.251	0.256	2.580	0.172	1.989	0.103	0.126	0.118	0.129	0.096
1789	chr12	6471038	6494500	+	0	NA	intron (NM_001159576, intron 1 of 11)	intron (NM_001159576, intron 1 of 11)	1621	NM_001159576	6337	Hs.591047	NM_001038	ENSG00000111319	SCNN1A	BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1	sodium channel epithelial 1 alpha subunit	protein-coding	1.061	nan	nan	9.855	3.798	2.064	1.188	0.667	0.103	2.313	1.190	6.346	5.263	0.120	0.120	0.853	1.391	0.624	1.379	nan	9.449	8.342	2.417	3.650	3.811	0.208	0.506	4.181	4.951	0.457	0.213	1.411	2.246	2.738	2.433	0.847	nan	1.196	0.531	3.100	3.404	1.155	5.090	1.188	6.346	0.929	0.436	1.523	0.273
4621	chr2	178479229	178492164	+	0	NA	Intergenic	Intergenic	-2002	NM_152275	92104	Hs.128384	NM_152275	ENSG00000197557	TTC30A	IFT70A	tetratricopeptide repeat domain 30A	protein-coding	2.744	1.671	2.326	1.543	2.451	1.342	1.246	0.521	0.086	0.364	0.350	1.695	3.218	0.450	0.099	2.111	2.787	3.828	3.474	1.377	1.306	3.695	1.780	2.394	2.508	5.947	6.758	2.778	3.895	2.478	2.724	1.458	3.162	1.716	1.810	1.909	2.453	0.949	0.838	0.769	1.608	0.317	0.425	1.246	1.695	0.737	0.601	1.883	0.498
4831	chr20	6492238	6499675	+	0	NA	intron (NR_109953, intron 3 of 3)	intron (NR_109953, intron 3 of 3)	88577	NR_109953	101929244	Hs.542488	NR_109953	ENSG00000229876	CASC20	-	cancer susceptibility candidate 20 (non-protein coding)	ncRNA	0.882	1.158	0.563	0.200	0.137	0.064	0.377	0.090	0.109	0.105	0.088	0.113	0.366	0.044	0.072	0.537	0.260	9.875	3.071	0.407	0.323	1.037	0.140	0.534	0.520	0.289	0.408	0.368	0.449	0.609	0.213	0.340	0.339	0.125	0.216	0.224	0.363	0.705	0.477	0.058	0.035	0.026	0.063	0.377	0.113		0.068	0.040	0.016
7385	chr7	95524981	95564881	+	0	NA	intron (NM_001278422, intron 5 of 15)	intron (NM_001278422, intron 5 of 15)	143113	NM_001135556	1780	Hs.440364	NM_004411	ENSG00000158560	DYNC1I1	DNCI1|DNCIC1	dynein cytoplasmic 1 intermediate chain 1	protein-coding	nan	1.075	nan	0.860	0.686	0.346	0.261	0.193	0.101	0.838	0.445	1.048	1.762	0.068	0.163	0.407	0.268	2.089	2.352	0.514	0.648	2.928	0.829	0.263	0.264	0.550	0.888	0.765	0.689	0.540	0.285	0.241	0.365	1.992	2.590	0.359	nan	3.976	1.932	0.270	0.873	0.539	0.097	0.261	1.048	0.069	0.287	0.077	0.103
2076	chr12	92498109	92504848	+	0	NA	intron (NR_132341, intron 1 of 4)	intron (NR_132341, intron 1 of 4)	34011	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA	1.861	1.151	1.092	4.042	0.732	0.333	0.432	1.388	0.310	0.746	0.501	0.727	nan	0.064	0.103	4.017	6.539	9.788	8.640	5.275	6.014	4.103	1.390	12.112	11.997	2.122	nan	2.557	nan	3.454	3.687	3.776	5.604	1.987	2.419	1.300	2.720	2.721	1.229	0.459	0.515	0.571	1.550	0.432	0.727	0.159	0.272	5.793	0.713
3947	chr19	5085808	5105743	+	0	NA	intron (NM_015015, intron 9 of 22)	intron (NM_015015, intron 9 of 22)	126651	NM_015015	23030	Hs.654816	NM_015015	ENSG00000127663	KDM4B	JMJD2B|TDRD14B	lysine demethylase 4B	protein-coding	0.925	0.960	1.412	0.284	0.569	0.366	3.908	0.169	0.089	0.498	0.279	0.763	0.899	0.049	0.071	0.807	1.645	0.337	0.737	1.558	1.884	0.748	0.191	0.457	0.418	0.888	1.345	0.862	nan	2.407	1.957	0.724	1.344	1.202	1.445	0.529	0.639	3.129	1.539	1.754	0.252	0.211	0.374	3.908	0.763	0.394	2.137	1.072	0.155
4757	chr2	235086223	235112895	+	0	NA	Intergenic	L1M5|LINE|L1	140213	NM_006944	6694	Hs.444488	NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding	0.713	nan	0.662	0.177	1.487	0.841	0.878	0.071	0.054	0.105	0.119	0.193	3.386	0.020	0.097	0.339	0.161	0.197	0.253	0.809	0.808	0.663	0.145	0.278	0.277	0.370	0.482	0.471	nan	0.368	0.181	0.230	0.137	0.082	0.072	0.232	0.415	0.492	0.356	1.165	0.380	0.011	0.039	0.878	0.193	0.051	0.644	0.041	0.044
6858	chr6	80273136	80285223	+	0	NA	Intergenic	MER4D1|LTR|ERV1	-32032	NM_001122769	167691	Hs.21945	NM_181714	ENSG00000135338	LCA5	C6orf152	LCA5, lebercilin	protein-coding	0.923	1.253	nan	0.459	0.622	0.424	0.902	0.189	0.094	0.379	0.237	1.209	0.851	0.260	0.120	0.858	0.700	6.193	10.010	0.940	1.189	1.115	0.407	0.659	0.625	1.265	1.572	0.996	0.864	0.660	0.321	1.078	2.159	0.355	0.688	0.225	0.439	1.111	0.648	1.322	0.324	0.078	0.276	0.902	1.209	0.121	0.310	1.122	0.101
6733	chr6	35435057	35476736	+	0	NA	intron (NM_003214, intron 1 of 12)	intron (NM_003214, intron 1 of 12)	8965	NM_003214	7005	Hs.485205	NM_003214	ENSG00000007866	TEAD3	DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5	TEA domain transcription factor 3	protein-coding	nan	1.554	nan	1.421	0.764	0.388	1.494	0.898	0.262	0.282	0.168	2.490	1.699	0.816	0.104	2.152	2.723	1.583	nan	nan	1.381	1.546	0.755	2.649	2.788	1.217	1.790	5.146	6.315	2.101	2.078	1.694	2.771	0.636	0.538	2.329	3.258	0.678	0.558	1.412	0.395	0.110	0.361	1.494	2.490	0.699	0.586	1.269	1.559
1838	chr12	12508975	12512940	+	0	NA	promoter-TSS (NR_024061)	promoter-TSS (NR_024061)	944	NM_058169	118426	Hs.504805	NM_058169	ENSG00000165714	BORCS5	LOH12CR1|LOH1CR12	BLOC-1 related complex subunit 5	protein-coding	6.447	2.876	6.062	8.782	4.047	2.455	3.151	0.566	0.080	3.753	1.733	6.087	8.438	2.870	0.257	3.263	4.047	4.225	6.148	nan	11.459	17.520	7.797	7.459	7.846	5.398	6.153	6.316	6.729	4.773	5.661	2.048	3.699	4.171	4.249	6.129	7.149	3.682	1.810	3.985	3.876	0.912	1.768	3.151	6.087	0.947	1.753	1.418	1.845
1773	chr12	3592924	3607047	+	0	NA	promoter-TSS (NM_019854)	promoter-TSS (NM_019854)	-379	NM_019854	56341	Hs.504530	NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding	1.101	nan	nan	1.110	0.509	0.295	1.069	0.116	0.069	0.188	0.159	0.383	8.630	0.027	0.074	0.183	0.205	0.049	0.108	nan	0.769	2.560	0.523	0.068	0.140	0.369	0.492	1.088	1.160	0.758	0.650	0.438	0.647	0.852	0.820	0.373	nan	0.861	0.571	0.458	1.004	0.080	1.833	1.069	0.383	0.371	0.552	0.231	0.071
3883	chr18	68187752	68193869	+	0	NA	Intergenic	Intergenic	127283	NM_001278515	220158	Hs.448217	NM_178506		GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1 (non-protein coding)	protein-coding	0.728	0.935	0.651	0.491	0.478	0.315	1.140	0.104	0.004	1.330	0.745	0.940	0.804	0.038	0.068	0.451	0.342	0.490	1.428	1.169	1.386	9.024	3.790	0.418	nan	0.244	nan	4.436	2.338	0.314	0.200	0.090	0.174	6.874	5.085	0.163	0.222	5.923	3.085	0.209	0.043	1.233	0.053	1.140	0.940	0.103	2.629	0.033	0.102
3166	chr16	70716981	70761118	+	0	NA	intron (NM_018052, intron 14 of 18)	intron (NM_018052, intron 14 of 18)	-19095	NM_138383	92154	Hs.432387	NM_138383	ENSG00000132613	MTSS1L	ABBA|ABBA-1|ABBA1	MTSS1L, I-BAR domain containing	protein-coding	2.490	0.742	nan	1.029	0.428	0.240	2.114	1.470	0.252	0.481	0.226	0.407	0.706	0.128	0.074	0.522	0.974	0.425	0.750	1.106	1.054	0.710	0.249	1.141	1.176	0.846	1.355	2.073	2.758	1.216	1.692	0.387	0.609	0.853	0.754	0.601	0.861	1.854	1.057	2.138	0.623	0.131	0.247	2.114	0.407	0.756	3.449	0.150	0.240
3704	chr18	25752560	25759947	+	0	NA	intron (NM_001792, intron 1 of 15)	CpG	1157	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding	1.421	2.394	0.659	4.029	2.820	1.086	8.580	0.484	0.022	1.751	1.151	4.380	15.580	0.560	0.078	3.497	4.450	0.937	nan	15.197	11.274	2.319	0.699	5.325	4.875	1.860	2.635	7.223	11.227	2.801	5.011	0.462	1.716	2.201	0.779	2.276	2.124	5.503	3.251	2.319	2.298	0.246	3.284	8.580	4.380	0.986	2.920	0.348	0.385
7279	chr7	48674189	48679761	+	0	NA	intron (NM_152701, intron 59 of 61)	intron (NM_152701, intron 59 of 61)	-287182	NR_003595	168448	Hs.567757	NM_152627		CDC14C	CDC14B2|CDC14Bretro|CDC14CP	cell division cycle 14C, pseuodgene	pseudo	0.905	0.810	nan	0.015	0.291	0.145	0.564	0.062	0.202	0.950	0.294	0.150	3.427	0.038	0.152	0.340	0.279	0.424	0.947	0.941	1.228	0.243	0.129	0.140	0.130	0.947	1.402	0.109	0.175	1.205	0.945	0.115	0.108	2.505	3.842	0.290	0.337	1.095	0.954	0.341	0.127	0.203	3.529	0.564	0.150	0.017	4.935	0.036	0.113
3392	chr17	37924368	37959165	+	0	NA	intron (NM_001284515, intron 5 of 7)	intron (NM_001284515, intron 5 of 7)	-7288	NM_001284516	22806	Hs.371680	NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|ZNFN1A3	IKAROS family zinc finger 3	protein-coding	nan	1.167	0.627	0.156	1.504	0.744	0.505	0.095	0.118	0.226	0.239	1.025	1.246	0.031	0.085	0.522	0.657	0.240	0.577	nan	0.886	0.374	0.178	0.673	0.710	0.193	0.341	1.541	1.170	nan	0.170	0.429	0.624	0.458	0.590	0.322	0.513	1.034	0.779	3.151	0.841	0.090	0.391	0.505	1.025	0.111	0.023	0.189	0.177
6374	chr5	94025967	94034702	+	0	NA	intron (NM_032290, intron 20 of 20)	intron (NM_032290, intron 20 of 20)	75943	NM_032290	84250	Hs.657315	NM_032290	ENSG00000133302	SLF1	ANKRD32|BRCTD1|BRCTx	SMC5-SMC6 complex localization factor 1	protein-coding	nan	5.719	1.086	0.231	0.379	0.110	0.808	0.291	0.110		0.076		0.558	0.394	0.132	0.279	0.265	0.286	0.484	0.313	0.471	1.303	0.408	0.177	0.128	1.440	1.772	1.154	0.796	0.632	0.325	0.182	0.202	2.012	2.969	0.248	nan	0.923	0.485	1.196	0.453	0.569	0.128	0.808		0.011	0.431	0.085	0.097
2860	chr15	44717786	44721955	+	0	NA	5' UTR (NM_016396, exon 1 of 13)	5' UTR (NM_016396, exon 1 of 13)	291	NM_016396	51496	Hs.497967	NM_016396	ENSG00000137770	CTDSPL2	HSPC058|HSPC129	CTD small phosphatase like 2	protein-coding	5.227	3.637	nan	4.760	8.251	4.401	4.121	5.231	0.701	3.542	2.049	6.402	10.608	5.280	0.165	7.815	6.917	11.222	15.670	11.584	10.585	9.200	4.854	11.953	11.967	5.707	nan	7.974	13.804	18.517	17.380	5.616	10.577	11.723	13.876	11.649	9.618	4.533	2.176	3.301	4.646	2.365	2.428	4.121	6.402	2.082	2.911	3.301	2.809
8225	chr9	101866579	101885185	+	0	NA	intron (NM_001130916, intron 1 of 7)	MIRb|SINE|MIR	8511	NM_004612	7046	Hs.494622	NM_004612	ENSG00000106799	TGFBR1	AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TGFR-1|tbetaR-I	transforming growth factor beta receptor 1	protein-coding	1.677	1.052	1.801	0.847	0.764	0.341	0.481	0.864	0.087	0.270	0.210	0.712	1.476	0.320	0.114	0.753	0.874	1.139	1.386	1.420	1.199	0.772	0.332	0.817	0.675	1.281	1.483	1.478	nan	4.680	3.894	0.374	0.870	0.418	0.396	2.030	3.398	nan	0.742	0.100	0.288	0.072	0.372	0.481	0.712	0.539	0.389	0.178	1.278
4253	chr2	23799854	23825788	+	0	NA	intron (NM_052920, intron 3 of 13)	intron (NM_052920, intron 3 of 13)	204523	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding	1.810	0.695	1.910	1.092	1.242	0.598	1.307	0.126	0.100	2.902	1.537	4.324	5.313	0.081	0.109	0.395	0.638	0.748	1.072	1.567	1.651	3.049	0.867	1.000	1.031	1.252	1.923	4.426	nan	1.534	1.303	0.386	0.645	2.175	2.166	0.593	1.149	2.985	1.517	0.138	0.360	0.641	0.361	1.307	4.324	1.339	2.409	0.276	0.308
6450	chr5	133249934	133263447	+	0	NA	Intergenic	L1MC4|LINE|L1	7322	NR_131252	105664404	Hs.582536	NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA	1.290	1.057	nan	0.248	0.340	0.206	0.313	0.105	0.096	0.220	0.208	0.266	1.076	0.062	0.114	0.419	0.477	0.266	0.374	2.940	2.695	2.616	0.694	0.461	0.487	1.238	1.648	2.280	1.774	0.955	1.290	0.170	0.224	4.604	3.768	0.250	0.474	0.884	0.465	0.568	0.065	2.311	1.039	0.313	0.266	0.289	0.313	0.083	0.154
7412	chr7	102230350	102257803	+	0	NA	intron (NM_001079877, intron 5 of 19)	intron (NM_001079877, intron 5 of 19)	13127	NM_001277335	100271927	Hs.530089	NM_001277335	ENSG00000170667	RASA4B	-	RAS p21 protein activator 4B	protein-coding	nan	1.622	3.468	0.667	1.276	0.660	2.695	0.418	0.277	0.862	0.520	1.048	2.093	0.795	0.194	1.342	2.528	0.990	1.280	2.396	2.279	1.942	0.614	1.958	1.923	0.599	0.852	2.747	3.252	2.081	1.923	0.657	0.947	1.277	0.942	1.690	nan	1.827	1.122	0.688	3.126	0.555	0.415	2.695	1.048	1.005	1.600	0.476	0.654
6741	chr6	36627402	36652921	+	0	NA	Intergenic	LTR16A|LTR|ERVL	2742	NR_109836	101154753	Hs.741557	NR_109836	ENSG00000281450	PANDAR	PANDA	promoter of CDKN1A antisense DNA damage activated RNA	ncRNA	nan	3.583	nan	1.370	1.361	0.703	2.751	2.095	0.240	1.485	0.608	1.724	9.528	0.320	0.128	0.565	0.794	1.111	nan	nan	1.869	4.415	1.254	0.744	0.664	2.840	3.948	5.979	7.768	1.831	1.736	1.870	2.733	6.187	5.817	0.295	0.430	2.777	1.477	4.864	2.983	1.854	0.766	2.751	1.724	0.706	1.463	2.012	0.053
3974	chr19	13075481	13088920	+	0	NA	intron (NM_152654, intron 1 of 1)	AluSx|SINE|Alu	1768	NM_152654	199699	Hs.331981	NM_152654	ENSG00000179284	DAND5	CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1	DAN domain BMP antagonist family member 5	protein-coding	2.361	0.957	8.372	0.486	1.085	0.429	0.540	0.722	0.622	0.398	0.215	1.000	0.692	0.630	0.108	0.627	1.292	1.061	1.534	2.224	2.062	2.049	0.638	0.523	0.633	3.524	3.868	1.151	1.532	5.260	5.385	0.449	0.554	1.763	1.955	1.120	2.212	2.861	1.349	1.214	0.362	0.478	0.271	0.540	1.000	0.941	0.574	0.060	1.406
3409	chr17	40681603	40690564	+	0	NA	Intergenic	Intergenic	-1868	NM_000263	4669	Hs.50727	NM_000263	ENSG00000108784	NAGLU	CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD	N-acetyl-alpha-glucosaminidase	protein-coding	3.812	3.028	nan	3.599	2.349	1.036	2.044	2.693	0.411	1.621	0.807	2.740	4.110	1.041	0.124	2.598	3.191	1.500	2.813	2.786	nan	4.009	1.436	4.462	4.178	1.692	2.430	4.793	nan	7.213	7.880	1.370	2.312	4.248	3.729	3.275	4.687	2.420	1.205	1.956	2.264	1.119	1.097	2.044	2.740	0.691	2.948	1.018	2.035
3918	chr18	77152333	77166742	+	0	NA	promoter-TSS (NM_001278675)	promoter-TSS (NM_001278675)	-737	NM_001278672	4772	Hs.534074	NM_006162	ENSG00000131196	NFATC1	NF-ATC|NF-ATc1.2|NFAT2|NFATc	nuclear factor of activated T-cells 1	protein-coding	nan	nan	0.728	0.116	1.916	1.035	1.953	0.037	0.033	0.556	0.229	2.039	3.605	0.526	0.046	5.390	7.115	7.088	8.588	2.853	nan	4.482	3.210	1.215	1.273	0.145	0.148	0.265	nan	0.349	0.224	2.385	4.259	0.545	0.696	0.103	0.111	0.310	0.343	2.064	0.062	0.046	0.850	1.953	2.039	0.180	0.141	2.242	0.017
8098	chr9	29202384	29218779	+	0	NA	intron (NM_001258282, intron 1 of 6)	intron (NM_001258282, intron 1 of 6)	2417	NM_001258282	158038	Hs.444665	NM_152570	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding	0.883	nan	nan	0.552	1.353	0.548	0.480	0.050	0.049	1.148	0.850	0.299	3.677	0.013	0.069	0.321	0.254	1.981	1.724	2.277	1.722	6.910	2.577	1.108	1.053	2.927	3.771	0.921	1.301	1.308	1.452	0.239	0.502	4.677	4.329	0.256	0.423	2.481	1.374	0.014	0.729	1.057	1.706	0.480	0.299	0.024	0.630	0.400	0.084
8106	chr9	33150767	33169144	+	0	NA	intron (NM_001497, intron 1 of 5)	intron (NM_001497, intron 1 of 5)	-6991	NR_108110	101929639	Hs.545818	NR_108108	ENSG00000233554	B4GALT1-AS1	-	B4GALT1 antisense RNA 1	ncRNA	1.535	nan	2.364	0.935	0.716	0.348	0.776	2.928	0.292	0.529	0.286	1.152	7.402	0.642	0.078	0.475	0.726	1.293	3.379	1.274	1.331	2.309	0.804	0.591	0.646	1.211	1.809	2.182	2.413	1.055	0.983	0.934	1.312	1.786	1.760	1.047	3.263	2.099	1.263	1.872	0.181	0.435	0.669	0.776	1.152	0.169	0.271	0.339	0.535
5011	chr20	53780686	53797167	+	0	NA	Intergenic	MER65A|LTR|ERV1	-250655	NR_110629	102723578	Hs.446269	NR_110629	ENSG00000235166	LINC01440	-	long intergenic non-protein coding RNA 1440	ncRNA	0.601	0.994	0.410	0.091	0.134	0.093	0.187	0.073	0.107	0.170	0.136	0.044	0.203	0.046	0.130	0.750	nan	0.299	0.255	0.212	0.235	8.504	2.674	0.102	0.115	0.177	0.286	0.160	0.186	0.290	0.077	0.165	0.216	0.707	0.626	0.075	0.226	0.126	0.171	0.027	0.108	0.121	0.049	0.187	0.044	0.006	0.061	0.018	0.030
5419	chr3	82190199	82213124	+	0	NA	Intergenic	Intergenic	-390711	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	1,4-alpha-glucan branching enzyme 1	protein-coding	nan	0.517	0.737	0.120	0.260	0.167	0.072	0.048	0.084	0.164	0.100	0.115	0.196	0.038	0.085	0.175	0.138	0.164	0.267	0.286	0.419	4.829	1.609	0.120	0.096	0.307	0.384	0.324	0.277	0.374	0.141	0.065	0.130	0.786	0.692	0.397	1.103	0.374	0.329	0.022	0.070	0.112	0.028	0.072	0.115	0.012	0.031	0.030	0.102
5442	chr3	102094735	102104372	+	0	NA	Intergenic	Intergenic	-54306	NM_175056	131368	Hs.352213	NM_175056	ENSG00000170044	ZPLD1	-	zona pellucida like domain containing 1	protein-coding	nan	nan	1.202	0.082	0.342	0.293	0.232	0.201	0.099	0.083	0.114	0.062	0.256	0.023	0.108	0.298	0.158	0.175	0.278	0.288	0.394	0.685	0.181	0.240	0.309	0.567	0.689	0.190	0.265	0.702	0.300	0.191	0.230	0.645	0.617	2.273	9.026	0.576	0.340	0.018	0.045	0.119	0.016	0.232	0.062	0.010	0.011	0.031	3.816
4490	chr2	129058702	129082077	+	0	NA	intron (NM_004807, intron 1 of 1)	AluSx1|SINE|Alu	5782	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding	1.356	nan	nan	1.067	1.174	0.480	1.258	0.280	0.055	0.507	0.309	1.313	3.197	0.350	0.067	1.052	1.495	1.359	2.169	2.566	2.255	3.621	0.817	1.885	1.799	0.567	0.998	6.076	7.010	1.012	0.975	0.840	1.761	0.602	0.734	1.401	2.864	1.710	0.886	3.353	2.714	0.106	0.497	1.258	1.313	0.476	1.922	0.507	0.500
5270	chr22	39317935	39324834	+	0	NA	Intergenic	Charlie25|DNA|hAT-Charlie	-32143	NM_145699	200315	Hs.226307	NM_145699	ENSG00000128383	APOBEC3A	A3A|ARP3|PHRBN|bK150C2.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3A	protein-coding	1.615	nan	1.068	1.197	3.134	1.255	2.599	0.240	0.255	0.385	0.213	6.164	3.964	0.567	0.187	0.313	0.630	1.646	3.813	4.098	4.638	3.930	3.600	0.114	0.126	1.189	nan	3.267	5.765	nan	1.905	0.392	0.694	5.200	5.891	0.465	1.745	1.379	0.557	2.118	3.308	1.862	0.103	2.599	6.164	0.490	0.771	0.403	0.129
729	chr1	185613125	185627821	+	0	NA	Intergenic	MIRc|SINE|MIR	-22853	NR_110793	101929093	Hs.535227	NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA	nan	nan	0.879	0.093	0.305	0.131	0.399	0.690	0.165	0.093	0.161	0.146	0.455	0.839	0.135	0.868	0.855	5.349	12.840	0.446	nan	0.218	0.099	nan	0.308	0.476	0.834	0.323	0.267	0.338	0.174	0.379	0.629	0.060	0.121	0.548	nan	0.535	0.410	0.030	0.127	0.013	0.114	0.399	0.146	0.047	0.124	0.099	0.159
2351	chr13	77899162	77905305	+	0	NA	Intergenic	Intergenic	-1056	NM_015057	23077	Hs.591221	NM_015057	ENSG00000005810	MYCBP2	Myc-bp2|PAM|Phr	MYC binding protein 2, E3 ubiquitin protein ligase	protein-coding	nan	2.475	4.535	3.887	5.256	2.949	4.939	2.443	0.183	1.416	0.696	3.662	11.471	1.657	0.129	6.643	10.030	3.438	4.492	7.034	4.961	6.880	1.893	3.693	3.628	1.565	2.015	4.148	4.632	nan	7.392	5.430	10.830	1.869	1.164	5.100	6.387	0.820	0.554	1.747	6.223	0.464	4.727	4.939	3.662	1.668	1.386	5.538	1.819
2	chr1	814454	819553	+	0	NA	Intergenic	Intergenic	-4821	NR_027055	284593	Hs.449006	NR_027055	ENSG00000230368	FAM41C	-	family with sequence similarity 41 member C	ncRNA	3.348	nan	1.024	0.221	0.447	0.219	0.060	0.178	0.127	0.154	0.066	0.023	0.616	0.044	0.191	0.597	0.575	0.187	0.237	0.410	0.634	0.519	0.247	0.650	0.788	9.890	10.481	nan	1.525	nan	0.540	0.724	0.807	0.098	0.165	0.243	0.380	0.853	0.519	0.076	0.173	0.019	0.078	0.060	0.023	0.633	0.008	0.264	0.049
4229	chr2	16023140	16038093	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-29905	NR_125783	103752554	Hs.269571	NR_125783	ENSG00000223850	MYCNUT	MYCNUN|lncUSMycN	MYCN upstream transcript (non-protein coding)	ncRNA	0.625	0.529	0.875	0.298	0.146	0.107	0.086	0.076	0.065	0.084	0.105	0.072	0.487	0.044	0.117	0.405	0.510	0.447	1.751	0.280	0.327	0.152	0.092	0.158	0.201	0.179	0.291	0.267	nan	0.646	0.610	23.261	31.859	0.023	0.060	0.462	nan	0.146	0.236	0.072	0.149	0.013	0.027	0.086	0.072	0.078	0.055	18.912	0.057
6319	chr5	71401700	71410682	+	0	NA	intron (NM_005909, intron 1 of 6)	intron (NM_005909, intron 1 of 6)	3096	NM_005909	4131	Hs.335079	NM_005909	ENSG00000131711	MAP1B	FUTSCH|MAP5|PPP1R102	microtubule associated protein 1B	protein-coding	4.229	nan	3.539	1.861	5.284	2.576	3.127	1.187	0.128	1.497	0.907	1.840	6.836	2.019	0.119	1.292	1.858	1.202	1.616	4.965	3.429	8.646	2.874	2.810	2.897	3.591	nan	2.857	4.208	5.948	7.297	1.097	1.646	6.647	6.053	2.630	3.860	1.756	1.142	1.854	3.861	1.609	2.509	3.127	1.840	0.782	2.080	0.574	1.793
2125	chr12	106518735	106535805	+	0	NA	intron (NM_014840, intron 1 of 6)	intron (NM_014840, intron 1 of 6)	6541	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding	2.590	1.866	nan	3.292	3.078	1.542	2.095	2.758	0.356	1.286	0.823	5.501	3.297	2.616	0.167	0.455	0.326	1.296	2.317	6.487	6.915	1.220	0.375	2.992	3.086	0.887	1.515	3.031	4.023	2.114	2.019	0.775	1.315	1.971	1.764	0.876	1.078	1.318	1.004	5.131	1.674	1.040	1.457	2.095	5.501	0.628	1.197	0.272	1.037
1231	chr10	122737356	122753185	+	0	NA	Intergenic	Intergenic	-134579	NR_033850	283089	Hs.568750	NR_033850	ENSG00000227165	WDR11-AS1	-	WDR11 antisense RNA 1	ncRNA	nan	1.015	1.081	0.056	0.302	0.172	0.138	0.097	0.110	0.010	0.043	0.061	0.446	0.049	0.075	0.302	0.170	0.803	2.591	0.255	0.274	0.963	0.284	0.149	0.132	0.863	0.898	0.880	1.103	0.852	0.707	0.135	0.182	0.111	0.106	1.722	5.997	0.109	0.164	0.053	0.286	0.018	0.092	0.138	0.061	0.283	0.036	0.044	4.061
973	chr1	245965591	245978002	+	0	NA	intron (NM_001167740, intron 10 of 11)	intron (NM_001167740, intron 10 of 11)	608918	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding	nan	3.278	nan	0.613	2.409	1.156	0.628	0.239	0.207	0.603	0.477	0.868	2.235	0.069	0.107	1.759	2.128	3.027	2.113	0.996	1.009	7.855	1.962	2.243	2.188	0.513	0.820	2.125	3.127	1.926	2.225	1.821	2.638	0.432	0.399	0.613	1.290	0.735	0.738	1.580	1.960	0.046	0.123	0.628	0.868	0.650	0.115	4.111	0.460
2446	chr13	111203161	111215913	+	0	NA	intron (NM_017817, intron 1 of 1)	MLT1D-int|LTR|ERVL-MaLR	4547	NM_017817	55647	Hs.743563	NM_017817	ENSG00000139832	RAB20	-	RAB20, member RAS oncogene family	protein-coding	0.490	nan	0.798	1.013	0.695	0.376	0.472	0.193	0.152	0.136	0.141	1.043	1.440	0.222	0.059	0.507	0.295	0.810	1.280	0.788	0.798	2.024	0.534	0.306	0.212	0.076	0.076	4.030	4.566	0.298	0.219	0.705	1.134	0.225	0.226	0.117	0.316	0.145	0.175	5.420	0.721	0.023	0.081	0.472	1.043	0.038	0.596	0.188	0.058
7904	chr8	123685594	123716205	+	0	NA	intron (NR_126348, intron 2 of 3)	intron (NR_126348, intron 2 of 3)	5446	NR_126348	104266958	Hs.575540	NR_126348	ENSG00000253819	LINC01151	-	long intergenic non-protein coding RNA 1151	ncRNA	nan	nan	nan	0.277	0.305	0.142	0.321	0.274	0.100	0.098	0.130	0.078	nan	0.039	0.077	0.267	0.185	0.411	1.279	0.569	0.629	1.133	0.303	nan	nan	1.699	2.047	0.619	0.511	1.295	1.333	0.200	0.335	1.828	2.872	0.406	0.728	1.158	0.673	0.457	0.134	0.648	0.044	0.321	0.078	0.818	0.829	0.055	0.198
1046	chr10	15383935	15402080	+	0	NA	intron (NM_001010924, intron 1 of 7)	L2c|LINE|L2	20051	NM_001010924	221061	Hs.66762	NM_001010924	ENSG00000148468	FAM171A1	C10orf38	family with sequence similarity 171 member A1	protein-coding	nan	0.637	0.831	1.127	1.571	0.786	0.078	0.120	0.115	0.355	0.232	0.907	0.326	0.060	0.085	2.193	2.662	2.893	2.098	0.747	0.544	6.253	2.151	0.328	0.339	0.526	0.772	1.475	1.018	0.819	0.968	1.226	1.171	0.425	0.565	0.375	0.687	0.181	0.204	0.061	0.049	0.037	0.054	0.078	0.907	0.032	0.022	0.353	0.246
5644	chr3	168331771	168355217	+	0	NA	intron (NR_021485, intron 4 of 15)	intron (NR_021485, intron 4 of 15)	73852	NR_030294	693136		NR_030294	ENSG00000207717	MIR551B	MIRN551B|mir-551b	microRNA 551b	ncRNA	1.038	1.073	0.852	0.105	0.282	0.158	0.420	0.236	0.193	0.335	0.226	0.071	0.169	0.174	0.096	0.328	0.200	0.290	0.326	0.408	0.543	3.590	1.357	0.251	0.252	1.178	1.474	nan	0.379	nan	0.474	0.183	0.237	1.050	1.333	0.401	0.797	0.920	0.707	0.017	0.080	0.298	0.179	0.420	0.071		0.035	0.030	0.159
7028	chr6	147522043	147534586	+	0	NA	intron (NM_001127715, intron 2 of 27)	intron (NM_001127715, intron 2 of 27)	-2564	NR_034115	729178	Hs.557608	NR_034115		STXBP5-AS1	-	STXBP5 antisense RNA 1	ncRNA	nan	2.828	nan	2.947	3.044	1.843	4.188	1.206	0.217	2.011	0.843	3.288	6.502	0.899	0.131	2.062	3.090	1.663	2.580	5.817	5.468	8.962	3.961	4.924	4.927	1.308	1.627	2.199	2.836	3.868	4.167	1.324	4.000	5.046	5.705	2.102	2.360	2.768	1.557	1.042	2.175	1.177	1.050	4.188	3.288	0.341	2.770	1.706	1.060
5864	chr4	38312086	38322290	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	195613	NM_001253915	23216	Hs.176503	NM_015173	ENSG00000065882	TBC1D1	TBC|TBC1	TBC1 domain family member 1	protein-coding	1.099	2.320	1.412	3.085	5.605	2.707	0.597	0.830	0.175	1.191	0.518	2.932	2.150	0.115	0.089	0.447	0.384	0.722	1.371	2.808	2.935	0.824	0.179	0.520	0.493	0.909	1.264	6.579	3.340	0.887	0.382	0.378	0.559	1.020	1.230	0.139	0.166	3.177	1.718	0.548	3.879	0.158	0.369	0.597	2.932	0.195	0.189	0.166	0.097
4021	chr19	33781376	33794821	+	0	NA	Intergenic	AluJr4|SINE|Alu	5372	NM_001287424	1050	Hs.76171	NM_004364	ENSG00000245848	CEBPA	C/EBP-alpha|CEBP	CCAAT/enhancer binding protein alpha	protein-coding	0.800	1.192	0.904	0.510	0.374	0.198	0.228	0.122	0.071	0.110	0.080	0.135	9.086	0.927	0.098	1.085	1.424	4.140	5.632	0.431	0.370	0.776	0.124	0.430	0.401	0.323	0.801	0.148	0.224	nan	0.929	1.973	2.541	0.214	0.338	0.258	0.297	0.369	0.422	0.730	0.456	0.022	0.053	0.228	0.135	0.353	0.279	1.138	0.074
2857	chr15	42395909	42403079	+	0	NA	Intergenic	Intergenic	-12742	NM_178034	283748	Hs.380225	NM_178034	ENSG00000159337	PLA2G4D	cPLA2delta	phospholipase A2 group IVD	protein-coding	0.643	0.804	nan	0.215	0.596	0.356	0.164	0.127	0.173	0.134	0.201	0.567	1.063		0.071	0.589	0.892	8.226	4.919	0.450	0.627	1.301	0.264	0.757	0.847	0.173	nan	1.457	1.241	0.751	0.424	0.331	0.428	0.093	0.154	0.257	0.687	1.200	0.565	0.256	0.319	0.027	0.133	0.164	0.567	0.378	0.112	0.124	0.052
3048	chr16	11728430	11736352	+	0	NA	Intergenic	AluSg|SINE|Alu	-29898	NM_003498	8303	Hs.618526	NM_003498	ENSG00000184602	SNN	-	stannin	protein-coding	1.300	1.228	nan	1.719	0.675	0.223	0.322	1.252	0.285	0.416	0.212	2.013	1.313	0.096	0.060	1.038	1.059	0.508	0.828	1.113	0.912	9.437	3.013	0.885	0.976	0.904	1.614	3.264	3.517	nan	0.967	0.453	0.416	1.248	1.940	0.313	0.305	0.788	0.661	0.528	0.332	0.254	0.110	0.322	2.013	0.598	0.558	0.101	0.015
7065	chr6	156656600	156671895	+	0	NA	Intergenic	Intergenic	396316	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA	nan	0.542	0.757	3.569	0.588	0.252	0.346	0.083	0.031	0.287	0.281	2.097	2.572	0.049	0.110	0.412	0.356	0.179	0.225	1.772	nan	6.051	1.561	0.243	0.259	0.077	0.160	1.865	2.324	1.776	1.796	0.167	0.219	1.398	0.971	0.157	nan	0.856	0.522	1.515	0.580	0.231	0.083	0.346	2.097	0.195	0.611	0.045	0.069
6394	chr5	105412351	105434000	+	0	NA	Intergenic	Intergenic	923540	NR_104671	102467213	Hs.570923	NR_104671	ENSG00000251027	LINC01950	-	long intergenic non-protein coding RNA 1950	ncRNA	0.702	1.180	0.825	0.366	4.951	2.858	0.456	0.097	0.089	0.367	0.186	0.574	0.581	0.045	0.131	0.247	0.221	0.313	0.546	0.298	0.378	1.998	0.521	0.143	0.101	0.507	0.765	0.447	0.359	0.362	0.161	0.121	0.255	1.630	1.299	0.151	0.193	0.553	0.314	0.041	0.045	0.197	0.230	0.456	0.574	0.149	0.112	0.167	0.023
7104	chr6	169414235	169420903	+	0	NA	Intergenic	L1PA15|LINE|L1	18169	NR_134622	101929460	Hs.355225	NR_134622	ENSG00000229720	LOC101929460	-	uncharacterized LOC101929460	ncRNA	0.603	nan	0.995	1.140	0.329	0.146	0.492	0.090	0.049	0.120	0.076	0.373	0.600	0.066	0.158	0.397	0.258	0.258	0.258	0.815	0.680	10.004	2.763	0.132	0.116	0.092	0.154	1.057	0.680	nan	0.088	0.214	0.218	0.102	0.118	0.112	0.189	0.785	0.498	0.009	0.208		0.036	0.492	0.373		0.001	0.044	0.018
8136	chr9	38465963	38477006	+	0	NA	Intergenic	Intergenic	-47040	NM_001007563	347252	Hs.349705	NM_001007563	ENSG00000137142	IGFBPL1	IGFBP-RP4|IGFBPRP4|bA113O24.1	insulin like growth factor binding protein like 1	protein-coding	0.666	nan	0.845	1.311	0.492	0.246	0.219	0.097	0.058	0.269	0.174	1.030	1.876	0.030	0.118	0.250	0.117	0.252	0.549	1.209	1.328	2.068	0.367	0.202	0.160	0.528	0.726	2.517	2.389	0.346	0.217	0.243	0.318	0.418	0.756	0.102	0.200	4.718	2.159	0.520	0.130	0.052	0.143	0.219	1.030	0.062	0.096	0.044	0.044
7801	chr8	95834223	95837529	+	0	NA	intron (NR_073445, intron 1 of 27)	CpG	358	NM_017864	55656	Hs.727669	NM_017864	ENSG00000164941	INTS8	C8orf52|INT8	integrator complex subunit 8	protein-coding	nan	3.059	6.641	6.325	5.325	2.332	2.051	1.729	0.252	1.179	0.771	4.511	15.887	2.468	0.157	4.703	5.360	3.784	nan	9.497	7.003	8.795	3.326	7.698	7.602	2.738	3.731	13.951	19.812	4.105	4.773	3.944	6.168	4.936	4.871	6.042	4.560	2.806	1.935	3.012	4.834	1.289	1.969	2.051	4.511	0.648	4.065	1.191	0.797
7987	chr8	143680445	143705763	+	0	NA	3' UTR (NM_015193, exon 3 of 3)	3' UTR (NM_015193, exon 3 of 3)	2729	NM_015193	23237	Hs.40888	NM_015193	ENSG00000198576	ARC	Arg3.1	activity regulated cytoskeleton associated protein	protein-coding	2.373	1.005	nan	0.152	1.421	0.827	1.780	0.081	0.082	0.254	0.193	0.491	2.226	0.072	0.043	0.834	1.288	0.095	0.205	nan	2.616	nan	0.163	0.262	0.215	0.410	0.746	0.730	0.982	1.561	1.787	0.558	0.677	0.607	0.411	0.432	0.686	1.702	0.937	1.420	0.901	0.079	0.047	1.780	0.491	0.928	1.257	0.214	0.064
344	chr1	65353110	65419980	+	0	NA	intron (NM_001321852, intron 1 of 24)	intron (NM_001321852, intron 1 of 24)	45707	NM_001321855	3716	Hs.207538	NM_002227	ENSG00000162434	JAK1	JAK1A|JAK1B|JTK3	Janus kinase 1	protein-coding	1.059	0.866	nan	0.216	0.525	0.252	0.224	0.691	0.125	0.169	0.145	0.188	0.628	0.110	0.128	0.904	0.653	1.244	1.788	0.494	0.588	0.398	0.131	2.163	2.218	nan	nan	0.769	nan	0.438	0.253	2.332	3.351	0.129	0.233	0.232	0.434	0.630	0.608	0.043	0.098	0.029	0.109	0.224	0.188	0.045	0.069	3.393	0.089
4682	chr2	207022090	207026060	+	0	NA	promoter-TSS (NM_001037663)	promoter-TSS (NM_001037663)	-157	NM_001199984	4719	Hs.471207	NM_005006	ENSG00000023228	NDUFS1	CI-75Kd|CI-75k|PRO1304	NADH:ubiquinone oxidoreductase core subunit S1	protein-coding	6.916	nan	5.269	7.281	5.812	3.310	5.801	2.801	0.534	2.941	1.417	5.480	11.575	4.583	0.103	7.075	5.069	8.611	10.942	7.414	6.410	7.195	3.723	25.504	26.503	6.450	7.733	9.756	18.068	11.811	12.418	5.653	10.073	5.021	6.084	11.804	9.777	3.721	2.168	3.723	2.864	1.302	2.453	5.801	5.480	2.820	3.381	2.345	3.672
7445	chr7	115102111	115139010	+	0	NA	Intergenic	Intergenic	-249151	NR_126407	104355291		NR_126407	ENSG00000233607	LINC01392	-	long intergenic non-protein coding RNA 1392	ncRNA	nan	0.629	0.899	0.112	0.272	0.126	0.742	0.182	0.104	0.195	0.208	0.517	0.245	0.059	0.175	0.431	0.231	0.167	0.280	0.161	0.219	0.116	0.088	0.228	0.242	0.402	0.585	0.302	0.364	0.415	0.218	0.160	0.262	7.471	8.437	0.292	0.594	0.517	0.498	0.041	0.093	2.431	0.069	0.742	0.517	0.050	0.036	0.053	0.081
6577	chr6	699179	717602	+	0	NA	Intergenic	Intergenic	-15249	NM_018303	55770	Hs.484412	NM_018303	ENSG00000112685	EXOC2	SEC5|SEC5L1|Sec5p	exocyst complex component 2	protein-coding	1.178	1.186	1.115	0.205	1.653	0.869	0.370	0.167	0.166	0.757	0.607	0.903	0.276	0.135	0.125	0.393	0.435	0.533	0.928	0.609	0.676	1.572	0.505	0.429	0.514	0.122	0.285	0.242	0.291	0.442	0.230	0.422	0.608	7.818	7.443	0.543	0.892	1.651	0.816	0.037	0.260	1.903	0.031	0.370	0.903	0.011	1.392	0.317	0.101
7129	chr7	2135028	2242264	+	0	NA	intron (NM_001013836, intron 11 of 18)	intron (NM_001013836, intron 11 of 18)	83937	NM_003550	8379	Hs.654838	NM_003550	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient like 1	protein-coding	1.260	1.010	1.915	0.837	0.414	0.208	0.746	0.686	0.126	0.280	0.212	1.576	nan	0.186	0.140	0.982	1.487	0.359	nan	3.133	3.198	nan	0.305	0.882	0.890	0.451	0.788	nan	5.915	0.385	0.348	0.597	0.819	0.818	1.058	0.509	1.055	0.427	0.352	1.838	0.449	0.167	0.411	0.746	1.576	0.143	0.634	0.437	0.328
2103	chr12	101146379	101152915	+	0	NA	Intergenic	Intergenic	-38727	NM_001286615	121601	Hs.58785	NM_178826	ENSG00000151572	ANO4	TMEM16D	anoctamin 4	protein-coding	0.735	0.812	nan	1.279	2.814	1.976	0.117	0.171	0.123	2.028	1.167	2.348	0.713	0.033	0.086	0.391	0.192	0.197	0.195	1.146	1.333	7.664	2.122	0.305	0.239	0.957	0.975	7.550	6.763	0.812	0.796	0.183	0.250	0.360	0.284	0.180	0.245	5.684	2.923	1.055	0.192	0.043	0.025	0.117	2.348	0.208	0.961	0.015	0.191
8396	chrX	93844845	93859306	+	0	NA	Intergenic	Intergenic	466150	NR_031667	100313772		NR_031667	ENSG00000221187	MIR548M	MIRN548M	microRNA 548m	ncRNA	0.503	3.898	0.613	0.760	0.183	0.100	0.123	0.079	0.044	0.273	0.279	0.016	0.112	0.106	0.209	0.188	0.138	0.135	0.108	0.098	0.196	0.851	0.386	0.152	0.122	0.113	0.109	0.189	0.211	0.370	0.139	0.055	0.118	0.195	0.148	0.094	0.187	0.061	0.063	0.019	0.043	0.047	0.006	0.123	0.016		0.490	0.027	0.052
2949	chr15	74212522	74221931	+	0	NA	intron (NR_040069, intron 1 of 2)	intron (NR_040069, intron 1 of 2)	-1573	NM_005576	4016	Hs.65436	NM_005576	ENSG00000129038	LOXL1	LOL|LOXL	lysyl oxidase like 1	protein-coding	2.634	1.194	1.154	0.491	1.335	0.804	1.490	3.147	0.310	0.292	0.220	0.953	3.842	0.432	0.072	2.521	3.587	0.707	1.121	1.388	1.213	1.450	0.344	0.618	0.791	1.907	2.500	1.759	2.375	9.279	11.346	1.424	2.058	0.201	0.160	1.050	2.915	0.836	0.496	0.993	1.376	0.061	2.121	1.490	0.953	2.399	0.290	1.138	0.825
6624	chr6	15242374	15250271	+	0	NA	5' UTR (NM_004973, exon 1 of 18)	5' UTR (NM_004973, exon 1 of 18)	116	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding	5.048	nan	4.090	4.027	2.411	1.420	3.348	1.812	0.468	1.277	0.623	5.170	2.878	2.923	0.190	2.200	4.052	10.610	10.197	5.449	4.439	4.338	1.493	5.918	5.479	2.817	3.606	3.704	5.126	8.520	11.446	2.014	4.739	3.752	3.158	3.632	6.076	1.566	0.947	1.179	4.463	0.955	2.571	3.348	5.170	1.454	1.662	2.104	2.644
2224	chr12	133410901	133415950	+	0	NA	Intergenic	Intergenic	-7999	NM_001172557	2802	Hs.507333	NM_005895	ENSG00000090615	GOLGA3	GCP170|MEA-2	golgin A3	protein-coding	0.818	0.428	0.482	0.123	0.241	0.089	1.156	0.119	0.032	0.187	0.048	0.213	0.319	0.086	0.083	0.264	0.502	0.233	0.442	3.277	1.872	0.220	0.141	0.462	0.314	0.328	0.580	nan	0.385	0.277	0.218	0.173	0.288	0.370	0.579	0.807	1.580	0.421	0.448	0.066	0.309	0.171	8.452	1.156	0.213	0.114	0.077	0.049	0.122
209	chr1	36830862	36854540	+	0	NA	intron (NM_032017, intron 1 of 11)	intron (NM_032017, intron 1 of 11)	8827	NM_001282547	83931	Hs.471768	NM_032017	ENSG00000196182	STK40	SHIK|SgK495	serine/threonine kinase 40	protein-coding	2.107	nan	2.122	2.949	1.106	0.566	1.351	2.293	0.394	1.476	0.597	2.576	4.010	1.052	0.119	1.299	1.676	1.476	2.816	1.685	1.702	nan	1.156	2.575	2.728	2.098	3.184	8.634	10.211	nan	1.865	1.490	2.172	0.692	1.125	2.578	4.338	1.619	nan	2.298	1.609	0.137	1.069	1.351	2.576	0.632	1.191	0.473	1.425
7442	chr7	114561919	114582087	+	0	NA	intron (NM_001166345, intron 2 of 4)	intron (NM_001166345, intron 2 of 4)	9794	NM_001166345	29969	Hs.741413	NM_199072	ENSG00000135272	MDFIC	HIC	MyoD family inhibitor domain containing	protein-coding	nan	0.710	1.601	0.113	0.403	0.182	0.254	1.561	0.208	0.163	0.171	0.765	0.957	0.672	0.150	0.428	0.269	0.796	1.339	0.223	0.241	0.235	0.101	0.595	0.597	2.646	3.337	0.399	0.780	0.451	0.334	0.151	0.337	1.017	0.928	0.533	0.882	0.463	0.630	0.074	0.177	0.173	0.126	0.254	0.765	0.062	0.202	0.064	0.171
5916	chr4	57251919	57260677	+	0	NA	Intergenic	LTR40c|LTR|ERVL	-2624	NM_001286670	132949	Hs.104347	NM_181806	ENSG00000157426	AASDH	ACSF4|LYS2|NRPS1098|NRPS998	aminoadipate-semialdehyde dehydrogenase	protein-coding	nan	1.338	1.247	2.449	2.309	1.209	1.095	0.899	0.289	0.822	0.648	1.661	2.705	0.817	0.068	2.778	2.899	2.322	3.390	2.571	1.658	6.580	2.368	4.623	4.961	2.887	3.357	3.983	5.458	2.851	3.114	1.179	2.387	1.739	1.529	1.726	2.283	7.015	3.627	0.801	1.899	0.328	0.903	1.095	1.661	0.266	1.772	0.882	0.623
4460	chr2	106566285	106580004	+	0	NA	Intergenic	Intergenic	104940	NM_001004720	8440	Hs.529244	NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding	0.912	nan	1.144	0.801	0.974	0.327	1.075	0.108	0.074	0.241	0.202	0.448	0.870	0.024	0.077	1.561	1.158	0.709	0.400	1.656	1.679	6.265	1.702	0.752	0.864	0.144	0.328	1.642	1.368	0.971	0.642	0.456	0.556	0.064	0.095	1.420	2.158	0.684	0.526	0.400	0.442	0.014	0.202	1.075	0.448	0.071	0.080	0.230	0.560
5080	chr21	27484585	27502004	+	0	NA	intron (NM_001136131, intron 1 of 15)	intron (NM_001136131, intron 1 of 15)	19414	NM_001136016	351	Hs.434980	NM_000484	ENSG00000142192	APP	AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2	amyloid beta precursor protein	protein-coding	1.240	1.000	1.342	0.695	1.815	0.911	0.505	1.137	0.194	1.192	0.615	2.069	0.862	0.181	0.083	0.598	0.665	1.704	5.602	1.388	1.639	2.346	1.961	0.684	0.651	1.951	2.564	0.907	1.804	0.809	0.540	0.341	0.620	1.000	1.322	0.461	nan	2.905	1.601	0.317	0.283	0.174	0.112	0.505	2.069	0.240	0.088	0.123	0.164
5683	chr3	174573969	174594817	+	0	NA	intron (NM_207015, intron 1 of 13)	intron (NM_207015, intron 1 of 13)	7282	NM_207015	254827	Hs.565848	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase like 2	protein-coding	1.074	1.503	1.329	0.228	1.731	0.939	0.149	0.198	0.172	0.761	0.650	0.560	0.944	0.063	0.087	0.579	0.528	5.184	8.061	0.560	0.647	2.214	0.596	4.378	4.231	0.897	0.968	0.858	0.837	0.749	0.287	0.400	0.516	1.896	1.907	0.412	0.572	0.603	0.493	0.112	0.098	0.472	0.038	0.149	0.560	0.023	0.039	0.514	0.092
6658	chr6	21173402	21209846	+	0	NA	intron (NM_017774, intron 13 of 15)	intron (NM_017774, intron 13 of 15)	320499	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA	1.390	1.658	nan	1.478	2.249	1.226	3.110	0.341	0.110	0.806	0.745	1.974	nan	0.063	0.100	0.415	0.409	0.623	nan	1.567	1.978	nan	0.891	0.597	0.599	1.593	1.678	1.434	1.444	2.132	1.493	0.183	0.283	1.645	1.877	0.482	1.309	1.786	0.838	3.356	1.024	0.480	0.192	3.110	1.974	0.534	0.309	0.070	0.457
7821	chr8	98434676	98448468	+	0	NA	intron (NR_125390, intron 1 of 2)	L1PA5|LINE|L1	17153	NR_125390	101927066	Hs.732112	NR_125390		LOC101927066	-	uncharacterized LOC101927066	ncRNA	nan	0.951	1.442	0.353	0.489	0.232	0.546	0.452	0.127	0.102	0.059	0.167	0.790	0.055	0.072	0.270	0.191	0.512	nan	0.495	0.532	3.181	0.855	0.257	0.235	0.395	0.422	0.914	0.683	0.459	0.290	0.201	0.567	0.677	1.241	0.414	1.204	0.591	0.537	0.020	0.136	0.200	0.069	0.546	0.167	0.050	2.739	0.716	0.291
4998	chr20	50409339	50434093	+	0	NA	Intergenic	AluSx|SINE|Alu	-2654	NM_001318031	57167	Hs.517113	NM_020436	ENSG00000101115	SALL4	DRRS|HSAL4|ZNF797	spalt like transcription factor 4	protein-coding	1.046	1.019	0.865	0.292	0.281	0.155	0.269	0.571	0.231	0.115	0.129	0.174	0.894	6.995	0.194	0.893	nan	0.231	0.422	0.394	0.383	1.948	0.508	1.337	1.348	0.496	0.778	0.590	0.975	1.695	1.738	0.560	0.686	1.456	1.170	1.217	1.737	0.335	0.430	0.090	0.090	0.604	0.656	0.269	0.174	0.316	0.028	0.120	0.455
6449	chr5	133177678	133194011	+	0	NA	Intergenic	L1MC3|LINE|L1	-63524	NR_131252	105664404	Hs.582536	NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA	1.471	1.301	nan	0.075	0.192	0.079	0.126	0.065	0.099	0.096	0.113	0.156	0.348	0.053	0.114	0.245	0.128	0.147	0.285	0.604	0.839	0.295	0.148	0.308	0.323	0.276	0.592	1.258	0.995	0.857	0.700	0.140	0.118	1.452	0.980	1.885	5.432	0.738	0.567	0.147	0.673	0.627	0.135	0.126	0.156	0.411	0.145	0.012	2.678
1873	chr12	25145728	25157637	+	0	NA	intron (NM_001321724, intron 1 of 17)	intron (NM_001321724, intron 1 of 17)	1186	NM_001321724	645177	Hs.569157	NM_001321724		LOC645177	-	uncharacterized LOC645177	protein-coding	nan	nan	nan	0.176	0.193	0.082	0.095	0.494	0.175	0.124	0.069	0.050	0.480	0.081	0.123	0.941	0.751	3.289	1.145	0.242	0.382	0.090	0.121	6.160	6.433	0.510	0.716	0.297	0.309	1.880	1.242	2.089	3.761	0.704	0.692	1.514	5.354	0.429	0.363	0.038	0.120	0.254	0.186	0.095	0.050	0.082	0.034	3.413	5.785
3651	chr18	6402613	6417953	+	0	NA	intron (NM_001330559, intron 1 of 18)	L2c|LINE|L2	4627	NM_173464	91133	Hs.128279	NM_173464	ENSG00000154655	L3MBTL4	HsT1031	l(3)mbt-like 4 (Drosophila)	protein-coding	1.606	1.159	3.388	0.075	0.240	0.061	0.819	0.115	0.084	0.735	0.412	0.101	nan	0.310	0.142	1.215	0.883	4.179	4.069	2.602	2.234	nan	0.164	1.343	1.469	0.065	nan	3.917	5.474	nan	0.605	1.819	3.658	5.518	8.286	0.114	nan	nan	0.341	2.360	0.430	1.117	2.136	0.819	0.101	0.303	0.246	1.611	0.024
4157	chr19	58173693	58179350	+	0	NA	Intergenic	Intergenic	-3782	NM_152677	201516	Hs.469663	NM_152677	ENSG00000180532	ZSCAN4	ZNF494	zinc finger and SCAN domain containing 4	protein-coding	1.449	1.220	0.960	0.624	0.654	0.453	0.700	0.278	0.327	0.330	0.205	8.041	0.741	0.959	0.112	0.431	0.727	0.463	0.788	2.543	3.147	4.036	0.937	0.115	0.225	0.362	0.684	0.273	0.233	1.051	0.866	0.697	0.734	0.699	0.374	0.228	0.738	0.929	0.573	0.256	0.062	0.034	2.145	0.700	8.041	0.172	0.035	0.180	0.044
6711	chr6	32152730	32169338	+	0	NA	promoter-TSS (NM_001276501).7	promoter-TSS (NM_001276501).7	-342	NM_001276501	63940	Hs.520046	NM_022107	ENSG00000213654	GPSM3	AGS4|C6orf9|G18|G18.1a|G18.1b|G18.2|NG1	G-protein signaling modulator 3	protein-coding	nan	1.736	nan	2.079	2.549	1.292	4.787	2.295	0.243	0.625	0.338	3.952	3.848	3.576	0.121	3.827	5.116	3.607	nan	nan	4.169	2.535	2.016	3.643	3.912	1.459	2.065	4.848	5.578	2.838	2.481	2.429	2.949	1.939	1.552	2.019	3.606	1.730	0.928	1.872	1.218	0.413	0.985	4.787	3.952	0.671	1.777	1.151	1.682
6842	chr6	70656734	70677164	+	0	NA	intron (NM_001858, intron 9 of 50)	intron (NM_001858, intron 9 of 50)	90501	NM_001858	1310	Hs.444842	NM_001858	ENSG00000082293	COL19A1	COL9A1L|D6S228E	collagen type XIX alpha 1 chain	protein-coding	nan	nan	1.188	0.186	0.189	0.110	0.113	0.124	0.109	0.108	0.126	0.088	0.346	0.037	0.120	0.376	0.247	0.211	0.275	0.205	0.271	0.152	0.095	0.208	0.250	2.638	2.858	0.470	0.451	3.580	3.022	0.107	0.174	0.049	0.081	0.338	0.615	0.363	0.340	0.129	0.157	0.005	0.012	0.113	0.088	0.342	0.065	0.043	0.303
8062	chr9	14298110	14331639	+	0	NA	promoter-TSS (NM_005596)	promoter-TSS (NM_005596)	-829	NM_001190737	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding	nan	nan	5.901	4.464	1.973	1.076	2.518	2.117	0.234	3.687	2.383	3.727	14.785	1.943	0.092	0.750	0.672	3.838	6.703	5.985	4.854	5.147	1.999	1.291	1.337	40.415	42.092	3.055	4.316	0.840	0.840	0.718	1.423	5.639	4.232	3.465	3.817	5.041	2.623	6.944	0.900	1.247	0.931	2.518	3.727	0.396	1.384	0.260	0.755
1212	chr10	112514495	112565592	+	0	NA	intron (NM_001134363, intron 1 of 13)	L1ME4a|LINE|L1	90619	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA	1.230	nan	1.776	0.884	2.558	1.250	0.351	0.298	0.085	0.077	0.093	0.926	0.815	0.047	0.076	0.476	0.440	0.323	0.714	0.741	0.767	0.795	0.303	0.062	0.069	0.973	1.327	3.740	4.295	0.499	0.494	0.182	0.382	0.154	0.251	0.738	3.040	0.854	0.601	1.559	2.020	0.068	0.222	0.351	0.926	0.241	0.157	0.131	1.191
4791	chr2	241621705	241631594	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-4332	NM_001102467	653437	Hs.437167	NM_001102467	ENSG00000185176	AQP12B	INSSA3	aquaporin 12B	protein-coding	0.498	nan	1.226	0.256	0.811	0.418	0.270	0.030	0.081	0.064	0.108	0.109	0.442	0.110	0.086	0.593	0.619	0.267	0.331	0.508	0.500	0.336	0.176	0.336	0.427	0.273	0.433	1.647	3.440	0.411	0.321	2.519	3.328	0.111	0.177	0.068	0.136	0.302	0.324	7.639	4.314	0.039	0.064	0.270	0.109	0.108	0.031	1.360	0.087
2253	chr13	27824235	27828733	+	0	NA	intron (NR_026911, intron 1 of 5)	intron (NR_026911, intron 1 of 5)	791	NR_026911	100131205	Hs.126774	NR_026911	ENSG00000220749	RPL21P28	RPL21_8_160	ribosomal protein L21 pseudogene 28	pseudo	4.889	3.275	4.522	7.970	3.678	1.884	2.367	3.564	0.179	2.124	1.215	5.454	7.584	3.202	0.134	15.070	11.515	9.597	12.744	9.965	11.707	9.718	9.030	12.895	13.742	6.164	7.946	9.409	13.070	18.283	18.540	9.765	14.566	3.970	4.799	17.344	12.361	3.674	2.287	1.877	2.909	0.737	1.637	2.367	5.454	0.717	3.403	3.936	4.025
2433	chr13	108515083	108522879	+	0	NA	5' UTR (NM_001080396, exon 1 of 3)	5' UTR (NM_001080396, exon 1 of 3)	479	NM_001080396	728215	Hs.535394	NM_001080396	ENSG00000204442	FAM155A	-	family with sequence similarity 155 member A	protein-coding	1.797	3.496	2.134	1.767	6.611	3.200	5.465	0.048	0.082	2.107	1.164	5.424	16.074	0.405	0.091	1.926	3.805	0.523	0.531	8.688	7.619	0.489	0.190	0.070	0.033	1.273	nan	4.523	6.963	1.568	1.872	0.163	0.333	2.330	1.195	0.291	nan	1.197	0.473	2.323	10.813	0.306	2.648	5.465	5.424	0.062	4.771	0.050	0.366
2787	chr14	104737455	104753256	+	0	NA	Intergenic	Intergenic	140295	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding	1.142	0.769	0.676	0.156	0.126	0.081	0.097	0.081	0.092	0.187	0.108	0.759	2.394	0.034	0.091	1.463	2.201	0.280	0.331	0.880	0.919	0.282	0.133	0.066	0.046	3.408	3.528	1.923	2.842	1.019	1.074	0.696	0.985	0.289	0.331	0.803	1.395	1.714	1.069	3.174	0.613	0.012	0.038	0.097	0.759	0.226	0.316	0.377	0.573
1477	chr11	66101417	66106959	+	0	NA	promoter-TSS (NM_004292)	promoter-TSS (NM_004292)	-188	NM_004292	9610	Hs.1030	NM_004292	ENSG00000174791	RIN1	-	Ras and Rab interactor 1	protein-coding	nan	1.123	3.057	0.377	0.354	0.116	1.255	0.338	0.058	0.989	0.418	0.299	0.707	0.494	0.057	0.747	1.299	0.380	0.622	3.558	3.188	1.061	0.230	0.383	0.315	2.916	3.568	0.380	0.921	5.583	8.790	0.744	0.958	2.820	1.505	0.434	0.592	1.416	0.975	0.182	0.201	0.518	0.068	1.255	0.299	3.949	2.026	0.248	0.134
6954	chr6	126174138	126196441	+	0	NA	intron (NM_001122842, intron 3 of 15)	L1ME4a|LINE|L1	-45285	NR_126386	104355145	Hs.590370	NR_126386	ENSG00000232131	NCOA7-AS1	-	NCOA7 antisense RNA 1	ncRNA	1.386	1.053	0.943	0.911	2.575	1.077	0.297	0.764	0.086	0.211	0.174	1.480	0.287	0.106	0.145	0.504	0.426	0.698	3.847	0.563	0.677	4.963	1.942	0.579	0.528	0.549	0.676	0.590	0.541	0.729	0.496	0.214	0.262	0.993	1.058	0.682	1.600	1.056	0.526	0.657	0.485	0.196	0.215	0.297	1.480	0.070	0.064	0.085	0.283
5777	chr3	191857497	191864501	+	0	NA	3' UTR (NM_021032, exon 5 of 5)	3' UTR (NM_021032, exon 5 of 5)	-95420	NR_046596	100873986	Hs.581652	NR_046596	ENSG00000231383	FGF12-AS1	-	FGF12 antisense RNA 1	ncRNA	nan	0.950	0.684	0.177	0.360	0.268	0.074	0.139	0.068	0.088	0.242	0.068	nan	0.032	0.084	0.774	0.352	9.072	1.717	0.295	0.397	0.256	0.180	4.948	5.007	0.639	0.865	0.470	0.353	0.599	0.280	0.340	0.638	0.077	0.152	0.418	0.854	0.486	0.276		0.077	0.014	0.068	0.074	0.068	0.055		0.193	0.177
6404	chr5	111089156	111101016	+	0	NA	intron (NM_001142474, intron 2 of 3)	intron (NM_001142474, intron 2 of 3)	-1171	NM_001142476	9315	Hs.36053	NM_004772	ENSG00000134986	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	3.072	2.130	2.376	1.284	2.659	1.459	1.114	2.016	0.162	0.953	0.626	1.552	3.646	1.397	0.114	2.008	2.070	11.214	7.101	4.722	4.383	3.636	1.581	4.166	4.130	2.985	nan	2.853	4.604	2.873	3.122	1.849	4.213	2.968	1.923	3.414	3.587	1.440	0.768	2.310	2.268	0.635	1.113	1.114	1.552	0.285	1.131	1.903	1.472
505	chr1	147509256	147512227	+	0	NA	Intergenic	Intergenic	-23553	NR_111936	100034743	Hs.696575	NR_003377		PDZK1P1	OTTHUMT00000038524|PDZK1P2	PDZ domain containing 1 pseudogene 1	pseudo	1.963	6.716	3.086	5.892	1.435	1.119	4.311	1.383	0.166	3.530	1.693	5.652	7.878	5.192	0.260	10.201	10.374	0.281	0.750	6.234	7.164	6.698	4.644	7.626	7.932	2.510	3.785	6.693	9.296	5.090	4.253	17.638	18.495	4.176	5.890	5.278	3.472	3.525	2.088	2.783	8.509	0.357	0.852	4.311	5.652	1.044	5.502	5.279	0.618
6310	chr5	70662922	70671962	+	0	NA	intron (NR_134268, intron 2 of 2)	intron (NR_134268, intron 2 of 2)	-4170	NR_003922	5370	Hs.742169	NM_031888	ENSG00000169040	PMCHL2	-	pro-melanin concentrating hormone like 2 (pseudogene)	pseudo	0.816	nan	0.700	0.146	0.411	0.228	0.177	0.058	0.179	1.295	1.295	0.146	0.348	0.037	0.097	0.217	0.142	0.146	0.233	0.300	0.364	nan	2.769	0.153	0.085	1.672	nan	0.967	0.738	0.674	0.472	0.096	0.174	5.106	6.511	0.206	0.269	3.785	1.396	0.044	0.670	2.246	0.106	0.177	0.146	0.011	1.024	0.087	0.028
7610	chr8	20333064	20347780	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	207138	NR_047509	100874051	Hs.385799	NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	ncRNA	nan	0.722	nan	0.059	0.221	0.033	0.296	0.079	0.055	0.117	0.142	0.065	0.179	0.052	0.102	0.441	0.394	0.113	0.117	nan	0.570	nan	1.548	0.066	0.104	0.207	0.348	0.230	0.235	0.429	0.162	0.135	0.122	0.589	0.573	0.194	0.227	nan	nan	0.057	0.030	0.085	0.038	0.296	0.065		0.076	0.040	0.041
8069	chr9	15507813	15514207	+	0	NA	promoter-TSS (NM_001317898)	promoter-TSS (NM_001317898)	7	NM_001128217	11168	Hs.658434	NM_021144	ENSG00000164985	PSIP1	DFS70|LEDGF|PAIP|PSIP2|p52|p75	PC4 and SFRS1 interacting protein 1	protein-coding	nan	6.424	3.433	5.824	6.769	3.530	4.598	1.505	0.029	3.839	1.753	4.649	9.961	2.588	0.105	3.317	3.684	4.479	5.427	12.750	11.752	7.325	4.416	4.489	4.607	4.270	4.770	5.212	7.745	7.406	7.753	6.833	10.444	8.359	8.289	4.762	4.190	6.929	3.212	6.130	4.088	2.257	4.765	4.598	4.649	0.743	1.268	3.795	1.117
670	chr1	174836623	174848513	+	0	NA	promoter-TSS (NM_001243763)	promoter-TSS (NM_001243763)	-956	NM_001243763	9910	Hs.585378	NM_014857	ENSG00000152061	RABGAP1L	HHL|TBC1D18	RAB GTPase activating protein 1 like	protein-coding	nan	nan	nan	2.350	2.399	1.410	0.578	0.239	0.270	2.523	1.236	3.458	4.631	0.073	0.131	1.595	1.630	10.422	14.845	nan	2.043	9.899	5.000	4.561	4.637	0.767	0.893	3.190	4.964	0.342	0.239	2.681	5.340	2.760	2.316	0.389	nan	2.495	1.404	0.144	2.928	0.443	0.616	0.578	3.458	0.048	0.282	3.826	0.217
2739	chr14	91973936	91978504	+	0	NA	5' UTR (NM_001284281, exon 1 of 13)	5' UTR (NM_001284281, exon 1 of 13)	604	NM_001284280	55671	Hs.533887	NM_017936	ENSG00000100796	PPP4R3A	FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1	protein phosphatase 4 regulatory subunit 3A	protein-coding	13.914	5.395	nan	10.623	6.971	4.417	9.861	5.063	0.840	4.084	2.086	9.191	14.300	6.175	0.163	9.032	8.522	12.717	18.390	17.698	17.160	7.503	5.096	27.599	29.582	6.384	8.748	15.289	23.962	16.252	17.085	8.338	13.818	9.389	9.763	8.491	6.365	5.863	3.773	9.292	8.340	1.731	5.665	9.861	9.191	1.891	3.083	2.485	2.772
1094	chr10	34084401	34093613	+	0	NA	Intergenic	AluSx1|SINE|Alu	-27399	NR_038932	100505583	Hs.568804	NR_038932	ENSG00000261683	LINC00838	-	long intergenic non-protein coding RNA 838	ncRNA	0.583	0.685	0.475	0.047	0.441	0.124	0.195	0.819	0.494	0.085	0.095	0.079	0.133	0.012	0.111	0.337	0.278	2.221	10.304	0.280	0.448	0.564	0.231	0.435	0.401	0.098	0.253	0.270	0.260	0.194	0.114	0.122	0.276	0.042	0.082	0.114	0.164	0.449	0.409	0.038	0.058	0.010	0.117	0.195	0.079	0.031	0.044	0.053	0.041
995	chr10	3405389	3410347	+	0	NA	intron (NR_131187, intron 1 of 1)	intron (NR_131187, intron 1 of 1)	46981	NR_131187	105376360	Hs.212226	NR_131187		LOC105376360	-	uncharacterized LOC105376360	ncRNA	0.366	2.323	1.584	5.366	3.528	2.174	0.874	0.492	0.195	2.685	0.922	5.375	4.639	0.835	0.088	0.426	0.355	0.220	0.527	1.425	2.074	12.137	10.918	0.142	0.135	0.100	0.232	3.571	4.863	0.109	0.030	0.111	0.249	3.490	5.433	0.103	0.184	3.102	1.423	0.011	1.146	0.959	0.064	0.874	5.375	0.038	1.018	0.020	
837	chr1	208903886	208912399	+	0	NA	Intergenic	Intergenic	-490477	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding	1.072	1.440	1.949	0.620	1.751	1.043	1.005	0.070	0.095	2.519	0.914	1.253	0.893	0.013	0.103	0.557	0.766	0.253	0.435	4.154	3.797	8.154	2.430	nan	nan	1.654	2.161	1.146	0.853	1.019	0.986	0.197	0.324	2.260	2.745	1.624	2.871	3.259	1.696	0.444	0.210	0.527	0.836	1.005	1.253	0.046	0.872	0.069	0.189
7708	chr8	62379436	62384985	+	0	NA	intron (NM_173519, intron 5 of 5)	intron (NM_173519, intron 5 of 5)	181685	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding	2.373	0.649	1.766	0.145	0.254	0.116	0.322	0.081	0.057	0.141	0.079	0.194	0.431	0.039	0.098	0.413	0.240	0.260	0.295	0.610	0.851	1.077	0.425	0.170	0.125	4.820	nan	0.227	0.264	nan	1.459	0.384	0.584	1.737	1.947	0.578	1.334	1.778	1.381	0.059	0.118	0.580	0.156	0.322	0.194	4.322	0.195	0.140	0.311
149	chr1	26215360	26242522	+	0	NA	intron (NM_203399, intron 3 of 4)	intron (NM_203399, intron 3 of 4)	3703	NM_203401	3925	Hs.209983	NM_005563	ENSG00000117632	STMN1	C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN	stathmin 1	protein-coding	3.262	1.896	nan	3.440	1.970	0.841	1.313	0.469	0.119	0.968	0.510	1.066	4.175	1.571	0.145	1.620	1.922	1.561	1.937	5.344	4.863	2.891	1.217	3.168	3.276	2.183	3.095	2.180	3.227	3.054	2.958	0.950	1.181	1.315	1.587	2.731	4.557	2.244	1.155	1.794	1.153	0.260	0.832	1.313	1.066	0.612	0.535	0.325	1.376
625	chr1	163023195	163028058	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	-12770	NM_001102445	5999	Hs.386726	NM_005613	ENSG00000117152	RGS4	RGP4|SCZD9	regulator of G-protein signaling 4	protein-coding	2.209	2.548	1.127	2.776	7.156	3.915	0.799	0.281	0.098	6.545	3.427	6.240	1.743	0.023	0.097	0.568	0.416	0.253	0.752	11.049	10.216	12.668	5.697	0.125	0.112	0.912	1.164	5.796	nan	0.784	0.724	0.310	0.545	2.977	2.875	0.631	1.414	3.987	2.278	0.585	1.883	0.426	0.033	0.799	6.240	0.098	0.957	0.060	0.404
6066	chr4	166698616	166709486	+	0	NA	Intergenic	Intergenic	-39828	NR_121677	101928131	Hs.406479	NR_121677		LOC101928131	-	uncharacterized LOC101928131	ncRNA	nan	nan	nan	0.127	0.280	0.075	0.094	0.335	0.065	0.129	0.117	0.152	0.613	0.060	0.090	0.241	0.257	7.000	9.200	0.157	0.172	0.374	0.131	0.777	0.844	0.592	0.736	0.334	0.214	0.375	0.205	0.086	0.130	0.253	0.163	0.221	0.331	0.649	0.414	0.203	0.041	0.017	0.132	0.094	0.152	0.115	0.057	0.046	0.091
406	chr1	94078208	94084429	+	0	NA	intron (NM_001261408, intron 5 of 13)	intron (NM_001261408, intron 5 of 13)	-1616	NM_001261410	8412	Hs.36958	NM_003567	ENSG00000137936	BCAR3	NSP2|SH2D3B	breast cancer anti-estrogen resistance 3	protein-coding	nan	nan	2.051	0.920	5.453	2.385	2.927	8.935	0.349	1.384	0.450	1.106	2.331	0.245	0.118	4.357	6.339	6.375	6.211	2.036	nan	3.780	1.181	2.137	2.023	2.586	nan	4.821	4.749	nan	0.381	5.506	5.684	1.547	1.236	0.597	1.120	2.215	1.467	3.776	0.527	0.537	0.396	2.927	1.106	0.095	4.384	3.821	0.278
7088	chr6	161854320	161866929	+	0	NA	intron (NM_013987, intron 8 of 10)	intron (NM_013987, intron 8 of 10)	-31385	NR_134593	105378098	Hs.691066	NR_134593		LOC105378098	-	uncharacterized LOC105378098	ncRNA	0.899	nan	0.708	0.125	2.133	1.311	0.488	1.818	0.458	0.297	0.162	0.269	0.242	0.120	0.082	2.172	3.135	7.507	8.842	0.369	0.309	3.589	1.454	0.611	0.643	0.093	0.239	0.202	0.248	nan	0.403	1.327	1.982	1.332	1.428	0.132	0.178	1.312	0.858	0.027	0.028	0.152	0.019	0.488	0.269	0.453	1.591	1.702	0.036
4798	chr20	326487	330020	+	0	NA	promoter-TSS (NM_001323685)	promoter-TSS (NM_001323685)	-296	NM_001323685	80023	Hs.416024	NM_024958	ENSG00000125841	NRSN2	C20orf98|dJ1103G7.6	neurensin 2	protein-coding	6.867	7.733	4.262	5.840	5.974	3.174	5.913	2.982	0.320	2.195	1.308	4.968	15.533	4.307	0.131	7.436	10.978	5.220	6.338	9.093	7.933	9.342	4.302	8.111	7.828	4.501	5.916	9.474	14.286	12.415	13.841	4.875	6.703	5.915	5.377	5.246	9.171	2.156	1.001	3.400	11.552	1.731	2.852	5.913	4.968	4.406	9.543	3.449	2.861
19	chr1	1507969	1517024	+	0	NA	Intergenic	Intergenic	-2234	NM_014188	29101	Hs.30026	NM_014188	ENSG00000160075	SSU72	HSPC182|PNAS-120	SSU72 homolog, RNA polymerase II CTD phosphatase	protein-coding	3.844	nan	4.697	3.456	2.747	0.933	1.037	1.775	0.202	0.986	0.580	1.257	3.408	2.049	0.181	2.717	2.531	2.898	5.248	4.999	4.262	2.907	1.746	8.497	8.975	2.404	nan	nan	10.244	nan	3.786	2.142	3.898	1.930	2.203	5.444	4.891	2.504	1.440	1.732	2.563	0.221	0.362	1.037	1.257	0.754	1.215	0.481	1.797
763	chr1	198639655	198655473	+	0	NA	intron (NM_002838, intron 2 of 32)	intron (NM_002838, intron 2 of 32)	39466	NM_002838	5788	Hs.654514	NM_002838	ENSG00000081237	PTPRC	B220|CD45|CD45R|GP180|L-CA|LCA|LY5|T200	protein tyrosine phosphatase, receptor type C	protein-coding	0.992	nan	1.225	0.155	0.398	0.284	1.521	1.055	0.121	0.338	0.363	0.053	0.872	0.071	0.110	0.586	0.690	0.754	1.311	1.189	1.309	0.612	0.221	0.321	0.344	2.917	nan	0.437	0.528	0.573	0.205	0.175	0.247	1.361	1.254	0.580	1.185	0.814	0.701	0.028	0.352	0.240	0.074	1.521	0.053	0.110	0.077	0.094	0.141
3332	chr17	26644068	26653857	+	0	NA	intron (NM_014573, intron 1 of 2)	intron (NM_014573, intron 1 of 2)	2841	NM_014573	27346	Hs.199695	NM_014573	ENSG00000109084	TMEM97	MAC30	transmembrane protein 97	protein-coding	nan	nan	nan	1.487	2.013	1.306	1.559	0.834	0.147	0.720	0.565	2.374	3.005	0.937	0.094	2.620	2.867	1.803	2.692	3.793	3.410	2.940	1.080	2.790	2.792	2.714	3.252	4.971	6.697	13.511	14.409	2.926	5.521	4.668	5.405	3.892	6.085	2.449	1.253	1.273	1.211	1.471	1.574	1.559	2.374	1.620	0.653	1.760	2.851
7853	chr8	103873940	103878170	+	0	NA	promoter-TSS (NR_126339)	promoter-TSS (NR_126339)	373	NM_001301668	51582	Hs.459106	NM_015878	ENSG00000155096	AZIN1	AZI|AZIA1|OAZI|OAZIN|ODC1L	antizyme inhibitor 1	protein-coding	13.247	nan	9.347	9.920	7.793	4.223	5.472	4.787	0.504	2.891	1.264	10.203	18.326	4.210	0.086	7.667	7.433	7.640	10.339	16.742	13.651	nan	3.692	21.556	22.274	4.546	6.237	6.669	11.306	nan	9.161	5.995	13.878	8.494	6.459	8.276	7.391	4.587	2.652	9.216	8.023	1.788	3.789	5.472	10.203	0.810	5.087	3.344	3.222
5948	chr4	80092887	80108299	+	0	NA	intron (NR_038342, intron 3 of 5)	intron (NR_038342, intron 3 of 5)	146578	NM_032693	84779	Hs.676048	NM_032693	ENSG00000156269	NAA11	ARD1B|ARD2|hARD2	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	1.346	0.652	2.024	0.172	0.291	0.249	0.358	0.110	0.104	0.142	0.167	0.148	0.509	0.027	0.120	0.832	0.924	0.396	0.301	0.359	0.511	1.057	0.295	0.379	0.335	1.761	nan	0.364	0.466	1.332	1.146	0.185	0.443	3.162	3.920	0.321	nan	0.520	0.313	0.014	0.098	1.341	0.784	0.358	0.148	0.212	0.079	0.160	0.231
7118	chr7	851178	873271	+	0	NA	intron (NM_001171945, intron 2 of 6)	intron (NM_001171945, intron 2 of 6)	5972	NM_025154	23353	Hs.438072	NM_025154	ENSG00000164828	SUN1	UNC84A	Sad1 and UNC84 domain containing 1	protein-coding	4.766	1.897	3.450	0.744	1.213	0.638	1.636	2.885	0.675	1.390	0.794	4.729	nan	1.223	0.157	1.789	2.692	0.965	nan	4.319	3.572	nan	0.663	1.826	1.816	1.913	2.629	nan	0.672	1.468	1.377	0.602	0.995	1.426	1.524	0.825	1.209	1.572	0.954	1.444	2.540	0.390	2.934	1.636	4.729	1.256	1.177	0.215	0.250
1880	chr12	27154738	27176751	+	0	NA	intron (NM_016551, intron 1 of 11)	AluSg|SINE|Alu	1595	NM_016551	51768	Hs.438641	NM_016551	ENSG00000064115	TM7SF3	-	transmembrane 7 superfamily member 3	protein-coding	nan	nan	nan	2.488	0.952	0.371	0.491	0.300	0.073	0.989	0.614	2.387	2.454	0.807	0.117	0.881	0.974	1.504	2.312	2.962	2.802	4.625	2.093	3.249	3.612	1.236	1.736	2.404	2.946	2.349	1.784	0.829	1.568	0.660	0.722	2.012	4.050	1.063	0.638	0.994	0.743	0.099	1.083	0.491	2.387	0.340	0.891	0.252	1.061
3389	chr17	37718462	37736446	+	0	NA	Intergenic	L2c|LINE|L2	36721	NM_006160	4761	Hs.322431	NM_006160	ENSG00000171532	NEUROD2	NDRF|bHLHa1	neuronal differentiation 2	protein-coding	nan	1.038	0.706	0.181	1.443	0.744	0.811	0.167	0.133	0.341	0.166	0.553	1.114	0.312	0.082	2.552	4.734	0.579	0.574	nan	1.201	0.863	0.417	0.839	0.945	1.255	2.135	1.364	2.804	nan	2.009	0.368	0.562	0.619	0.305	0.681	0.924	1.729	0.941	0.121	0.510	0.195	0.089	0.811	0.553	0.678	0.300	0.116	0.214
4063	chr19	40922574	40941172	+	0	NA	promoter-TSS (NM_013376)	promoter-TSS (NM_013376)	59	NM_013376	29950	Hs.269898	NM_013376	ENSG00000197019	SERTAD1	SEI1|TRIP-Br1	SERTA domain containing 1	protein-coding	3.128	1.612	3.012	1.512	1.122	0.610	1.209	1.531	0.497	0.538	0.434	1.356	6.531	5.498	0.270	1.206	1.847	1.977	3.444	2.111	1.989	2.280	0.512	3.429	3.846	1.427	2.026	3.061	4.703	3.421	2.960	1.303	1.603	1.425	1.334	1.393	2.787	1.868	0.961	1.139	1.651	0.322	0.539	1.209	1.356	0.713	1.752	0.559	0.642
4883	chr20	21069268	21087714	+	0	NA	Intergenic	Intergenic	-28133	NM_001163022	55857	Hs.187635	NM_018474	ENSG00000088970	KIZ	C20orf19|HT013|Kizuna|NCRNA00153|PLK1S1|RP69	kizuna centrosomal protein	protein-coding	1.068	0.984	nan	0.409	1.821	0.906	0.547	0.160	0.070	1.123	0.690	4.264	0.988	0.130	0.095	1.894	2.650	0.992	0.998	0.659	0.844	3.981	1.395	0.624	0.639	0.363	0.512	1.821	2.742	2.255	1.830	3.161	2.269	0.487	0.580	0.186	0.451	1.815	1.050	0.081	0.654	0.031	0.235	0.547	4.264	0.084	0.497	0.571	0.246
4805	chr20	1461970	1476093	+	0	NA	intron (NM_001122962, intron 1 of 4)	AluJb|SINE|Alu	3202	NM_001134836	284759	Hs.721685	NM_001122962	ENSG00000196209	SIRPB2	PTPN1L|PTPNS1L3|dJ776F14.2	signal regulatory protein beta 2	protein-coding	0.644	1.099	0.497	0.074	0.142	0.068	0.054	0.063	0.140	0.055	0.082	0.068	0.237	0.023	0.041	1.258	1.072	0.278	0.275	0.207	0.290	0.215	0.120	9.624	9.859	0.161	0.343	0.234	0.283	0.348	0.124	1.161	1.758	0.054	0.082	0.183	0.197	0.191	0.306	0.008	0.095	0.027	0.011	0.054	0.068	0.061	0.014	1.998	0.022
8420	chrX	153143169	153177203	+	0	NA	Intergenic	Intergenic	-7799	NR_027419	554	Hs.567240	NM_000054	ENSG00000126895	AVPR2	ADHR|DI1|DIR|DIR3|NDI|V2R	arginine vasopressin receptor 2	protein-coding	1.576	0.804	1.181	0.187	1.013	0.480	0.953	0.046	0.052	0.138	0.104	0.622	0.989	0.054	0.054	1.028	2.133	0.169	0.251	1.313	1.328	0.773	0.252	0.175	0.183	0.341	0.555	0.225	0.353	3.185	3.325	0.448	0.624	0.331	0.382	0.562	1.167	0.469	0.352	0.668	2.095	0.093	0.378	0.953	0.622	0.639	0.227	0.338	0.232
1998	chr12	64797487	64800136	+	0	NA	intron (NM_007235, intron 1 of 24)	CpG	658	NM_007235	11260	Hs.85951	NM_007235	ENSG00000184575	XPOT	XPO3	exportin for tRNA	protein-coding	7.772	3.408	5.317	9.582	9.733	6.652	8.466	6.364	0.797	3.729	2.306	9.742	14.379	6.938	0.307	9.001	10.566	6.582	10.717	13.005	nan	12.249	6.294	27.514	27.206	6.305	7.661	16.440	21.478	13.063	17.283	14.464	19.387	12.144	12.547	12.634	11.807	6.138	3.475	4.664	11.466	2.702	7.412	8.466	9.742	2.599	4.996	3.607	4.286
2930	chr15	69104212	69115848	+	0	NA	intron (NM_006305, intron 1 of 6)	CpG	3231	NM_006305	8125	Hs.458747	NM_006305	ENSG00000140350	ANP32A	C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32	acidic nuclear phosphoprotein 32 family member A	protein-coding	5.121	3.618	nan	3.962	6.861	3.625	4.963	3.440	0.262	3.363	1.605	7.511	14.531	4.026	0.115	5.099	5.571	6.866	8.775	7.056	5.419	nan	1.657	8.177	8.017	3.714	4.713	4.406	7.111	12.422	14.537	3.297	7.435	3.784	4.007	6.499	5.863	1.581	1.199	3.189	5.437	1.336	3.896	4.963	7.511	2.199	2.963	3.219	2.860
5387	chr3	62226749	62249306	+	0	NA	intron (NM_002841, intron 15 of 29)	intron (NM_002841, intron 15 of 29)	66595	NR_038281	100506994	Hs.656620	NR_038281	ENSG00000241472	PTPRG-AS1	-	PTPRG antisense RNA 1	ncRNA	0.879	nan	1.034	0.086	0.146	0.114	0.368	0.127	0.035	0.034	0.092	0.175	0.335	0.048	0.068	0.752	0.698	2.265	1.574	0.271	0.358	0.863	0.322	0.178	0.188	3.247	3.347	0.244	0.201	0.364	0.187	0.434	1.168	0.402	0.419	0.342	nan	0.457	0.406	0.059	0.083	0.085	0.170	0.368	0.175	0.052	0.054	1.733	0.275
6545	chr5	169638890	169666375	+	0	NA	Intergenic	L2b|LINE|L2	-7289	NR_131092	133874	Hs.519749	NM_001102609	ENSG00000234511	C5orf58	-	chromosome 5 open reading frame 58	protein-coding	nan	0.732	0.581	0.051	0.272	0.181	0.177	0.092	0.064	0.029	0.073	0.087	0.436	0.028	0.115	0.494	0.424	5.965	4.953	0.339	0.377	0.124	0.075	0.237	0.222	0.158	0.270	0.247	0.260	0.457	0.228	0.471	0.724	0.156	0.220	0.084	0.168	0.729	0.489	0.014	0.052	0.045	0.061	0.177	0.087	0.039	0.048	0.587	0.032
6774	chr6	43654119	43678573	+	0	NA	Intergenic	Intergenic	-10797	NM_018135	55168	Hs.520149	NM_018135	ENSG00000096080	MRPS18A	HumanS18b|MRP-S18-3|MRPS18-3|S18bmt	mitochondrial ribosomal protein S18A	protein-coding	2.387	1.417	2.798	1.095	1.102	0.584	2.290	0.704	0.217	0.289	0.279	1.666	1.861	0.195	0.103	1.089	1.948	0.675	1.148	0.909	1.176	8.053	3.341	1.597	1.710	0.508	0.819	3.012	nan	2.488	2.330	0.692	1.118	1.663	2.361	1.016	2.963	0.969	0.688	0.530	0.527	0.467	0.621	2.290	1.666	0.480	0.487	0.336	0.909
1367	chr11	32008430	32019844	+	0	NA	Intergenic	AluJb|SINE|Alu	48727	NR_120527	100506675	Hs.446169	NR_120526	ENSG00000254584	LOC100506675	-	uncharacterized LOC100506675	ncRNA	0.816	0.768	nan	0.077	0.326	0.198	0.270	0.092	0.142	0.240	0.137	0.021	0.371	0.057	0.076	0.552	0.455	0.261	0.279	0.177	0.267	0.510	0.169	0.257	0.243	1.119	1.843	0.107	0.138	1.105	1.326	0.179	0.288	0.485	0.323	0.342	nan	0.480	0.458	0.063	0.055	0.241	0.919	0.270	0.021	2.420	0.053	0.061	0.087
5236	chr22	29612128	29624095	+	0	NA	intron (NM_001267895, intron 3 of 14)	AluJb|SINE|Alu	16210	NM_001267895	129080	Hs.289106	NM_133455	ENSG00000186998	EMID1	EMI5|EMU1	EMI domain containing 1	protein-coding	nan	0.466	1.111	0.081	0.261	0.187	0.205	0.120	0.169	0.119	0.085	0.159	0.319	0.080	0.054	0.345	0.448	0.281	nan	0.382	0.335	0.413	0.192	0.533	0.588	0.530	nan	0.320	0.341	0.491	0.299	0.278	0.221	0.150	0.278	0.247	nan	4.055	2.106	0.079	0.089	0.063	0.053	0.205	0.159	0.187	1.247	0.033	0.031
1070	chr10	24525291	24554548	+	0	NA	intron (NM_001098500, intron 3 of 18)	AluSx|SINE|Alu	-24695	NR_030334	693188		NR_030334	ENSG00000207930	MIR603	MIRN603|hsa-mir-603	microRNA 603	ncRNA	0.566	1.183	2.232	0.069	0.144	0.103	0.183	0.367	0.214	0.021	0.070	0.053	0.150	0.052	0.069	0.842	0.780	2.483	6.022	0.273	0.257	0.203	0.103	0.178	0.157	0.120	0.222	0.096	0.098	0.241	0.111	0.615	1.388	0.043	0.033	0.176	0.214	0.110	0.173	0.491	0.364	0.006	0.066	0.183	0.053	0.073	0.021	1.002	0.085
7169	chr7	14016132	14033062	+	0	NA	intron (NM_004956, intron 5 of 13)	intron (NM_004956, intron 5 of 13)	1542	NM_001163150	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding	nan	2.544	nan	1.370	1.984	1.115	1.272	3.869	0.106	5.463	2.938	0.964	5.971	0.841	0.168	nan	0.574	0.376	0.436	3.011	2.684	3.295	1.127	2.002	1.992	5.571	6.313	2.783	4.382	1.130	0.985	0.121	0.133	3.387	3.611	0.286	0.415	1.492	0.852	0.750	0.985	0.780	0.711	1.272	0.964	0.149	2.492	0.023	0.051
3117	chr16	30932830	30936797	+	0	NA	promoter-TSS (NR_024348)	promoter-TSS (NR_024348)	-223	NR_024348	283932	Hs.711535	NM_175901	ENSG00000260852	FBXL19-AS1	NCRNA00095	FBXL19 antisense RNA 1 (head to head)	ncRNA	4.621	2.050	3.525	4.364	5.211	2.500	3.583	1.345	0.040	1.348	0.712	5.107	17.448	4.442	0.069	6.841	6.718	4.955	5.629	6.501	6.150	9.148	6.615	15.282	16.466	3.626	4.408	9.686	13.277	7.110	7.192	3.830	5.435	4.584	5.613	5.360	5.367	2.786	1.609	3.370	2.891	0.602	1.809	3.583	5.107	2.015	3.404	2.510	1.934
7992	chr8	144357984	144374838	+	0	NA	Intergenic	AluY|SINE|Alu	-2541	NR_120683	100507316	Hs.446671	NR_120682	ENSG00000253716	MINCR	LINC01604	MYC-induced long noncoding RNA	ncRNA	2.485	1.484	nan	1.578	1.399	0.725	1.536	0.590	0.143	0.438	0.216	1.916	5.168	1.138	0.079	2.426	2.291	1.905	2.891	nan	2.992	nan	0.825	2.339	2.380	1.215	1.914	1.234	1.405	1.467	1.484	1.804	2.767	1.254	1.418	1.402	1.972	1.617	0.990	1.271	2.099	0.188	0.340	1.536	1.916	0.516	3.810	0.648	0.592
4332	chr2	50126241	50143046	+	0	NA	Intergenic	Intergenic	66698	NM_001320156	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding	1.208	nan	1.127	0.089	0.150	0.152	0.412	0.072	0.057	0.139	0.132	0.158	0.300	0.023	0.125	0.287	0.160	0.212	0.383	0.348	0.468	0.430	0.143	0.398	0.434	0.595	0.682	0.391	0.389	2.493	1.743	0.099	0.220	0.058	0.120	1.316	3.073	0.505	0.476	4.571	0.196	0.026	0.019	0.412	0.158	0.052	0.055	0.018	1.207
111	chr1	17885975	17933633	+	0	NA	intron (NM_001319837, intron 1 of 25)	intron (NM_001319837, intron 1 of 25)	2756	NM_001011722	55160	Hs.443460	NM_018125	ENSG00000074964	ARHGEF10L	GrinchGEF	Rho guanine nucleotide exchange factor 10 like	protein-coding	1.176	0.799	nan	0.087	1.695	1.052	0.403	1.220	0.186	0.693	0.245	0.327	1.270	0.137	0.110	1.436	2.652	0.394	0.826	1.520	1.422	1.708	0.671	0.719	nan	0.507	nan	2.220	2.037	nan	0.613	0.977	1.508	0.416	0.384	0.424	1.245	0.759	0.626	1.001	1.989	0.096	0.179	0.403	0.327	0.491	0.880	1.263	0.143
4776	chr2	237808758	237828487	+	0	NA	Intergenic	Intergenic	146188	NR_135202	93463	Hs.652810	NR_135202	ENSG00000124835	LOC93463	-	uncharacterized LOC93463	ncRNA	1.152	nan	0.699	0.529	0.289	0.122	0.242	0.088	0.008	0.024	0.066	0.170	0.767	0.067	0.107	5.182	4.480	0.199	0.328	0.381	0.436	0.167	0.068	3.083	3.224	0.946	1.286	0.648	nan	1.280	0.779	1.424	1.289	0.083	0.131	0.248	0.546	0.281	0.321	0.199	0.141	0.038	0.060	0.242	0.170	0.152	0.175	0.826	0.073
5038	chr20	61366642	61377214	+	0	NA	intron (NM_002531, intron 1 of 3)	intron (NM_002531, intron 1 of 3)	31739	NM_002531	4923	Hs.590869	NM_002531	ENSG00000101188	NTSR1	NTR	neurotensin receptor 1	protein-coding	0.890	0.903	1.149	0.116	0.381	0.288	0.411	0.099	0.058	0.120	0.148	0.253	0.711	0.102	0.059	1.453	nan	0.104	0.133	1.302	1.074	0.331	0.171	0.367	0.355	0.190	0.538	0.163	0.171	1.160	1.057	1.002	1.209	0.060	0.085	0.415	0.772	0.596	0.718	6.774	0.543		0.030	0.411	0.253	0.449	0.113	0.145	0.213
6206	chr5	22154875	22196151	+	0	NA	intron (NM_001317227, intron 1 of 11)	intron (NM_001317227, intron 1 of 11)	33052	NR_003921	5369	Hs.247975	NM_031887	ENSG00000168967	PMCHL1	-	pro-melanin concentrating hormone like 1 (pseudogene)	pseudo	0.744	1.828	1.266	0.566	0.309	0.195	0.167	0.188	0.133	0.743	0.508	0.328	0.874	0.044	0.107	0.461	0.434	0.276	0.337	0.511	0.629	1.074	0.501	0.160	0.149	nan	2.325	0.807	0.791	1.133	0.708	0.215	0.386	4.313	5.176	0.229	0.453	nan	1.045	0.029	0.528	1.797	0.035	0.167	0.328	0.370	0.455	0.173	0.138
5517	chr3	124909169	124914668	+	0	NA	intron (NM_024628, intron 2 of 13)	intron (NM_024628, intron 2 of 13)	18325	NM_001195483	84561	Hs.658514	NM_024628	ENSG00000221955	SLC12A8	CCC9	solute carrier family 12 member 8	protein-coding	1.220	nan	2.139	0.099	0.258	0.029	0.163	0.272	0.119	0.085	0.193	0.109	0.160	0.001	0.046	0.978	1.180	8.699	6.346	0.396	0.639	1.304	0.482	0.882	1.002	0.556	nan	0.365	0.288	0.946	0.741	0.546	0.913	0.054	0.051	0.408	0.647	0.488	0.470	0.161	0.098	0.018	0.068	0.163	0.109	0.070	0.036	0.144	0.222
3577	chr17	75873694	75911450	+	0	NA	Intergenic	Intergenic	-12403	NR_028337	400624	Hs.514521	NM_001001685	ENSG00000204283	LINC01973	-	long intergenic non-protein coding RNA 1973	ncRNA	1.326	0.958	0.656	0.098	0.624	0.314	1.016	0.400	0.128	0.146	0.154	0.761	1.566	0.101	0.107	1.724	2.391	0.990	0.800	1.245	1.191	0.797	0.237	0.488	0.533	nan	0.818	1.573	1.757	2.251	2.113	0.650	0.900	0.136	0.210	0.459	0.767	nan	0.556	1.544	0.560	0.028	0.266	1.016	0.761	0.439	0.616	0.270	0.124
7808	chr8	97522369	97542354	+	0	NA	intron (NM_002998, intron 1 of 4)	intron (NM_002998, intron 1 of 4)	26479	NM_002998	6383	Hs.1501	NM_002998	ENSG00000169439	SDC2	CD362|HSPG|HSPG1|SYND2	syndecan 2	protein-coding	nan	0.895	1.533	0.171	0.482	0.296	0.408	1.271	0.203	0.070	0.112	0.278	0.879	4.388	0.148	0.261	0.196	0.522	nan	0.711	0.880	0.486	0.320	0.295	0.354	0.327	0.471	0.783	0.832	3.631	2.945	0.217	0.283	0.466	0.632	1.835	4.003	0.326	0.384	0.030	0.433	0.052	0.091	0.408	0.278	0.175	0.031	0.050	1.654
559	chr1	154528866	154548036	+	0	NA	Intergenic	Intergenic	-1806	NM_000748	1141	Hs.2306	NM_000748	ENSG00000160716	CHRNB2	EFNL3|nAChRB2	cholinergic receptor nicotinic beta 2 subunit	protein-coding	nan	nan	2.051	1.250	1.547	0.812	2.147	0.750	0.126	1.248	0.719	1.407	6.014	0.903	0.117	2.815	2.939	1.703	2.078	3.525	nan	2.855	0.853	0.838	0.702	2.302	2.837	3.004	4.025	1.760	1.781	3.697	5.606	1.603	1.805	1.514	2.325	1.765	0.845	0.838	2.231	0.210	0.781	2.147	1.407	0.449	1.893	3.171	0.490
5679	chr3	173958489	173973217	+	0	NA	intron (NM_014932, intron 4 of 6)	intron (NM_014932, intron 4 of 6)	-327267	NR_046664	100874010	Hs.624265	NR_046664	ENSG00000228213	NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA	1.131	1.204	0.769	0.137	0.404	0.304	0.270	0.301	0.093	0.320	0.247	0.195	0.180	0.015	0.115	0.379	0.214	0.275	0.360	0.399	0.459	4.121	0.839	0.250	0.233	5.598	6.016	0.358	0.285	0.776	0.451	0.157	0.211	1.166	1.321	0.370	0.625	0.542	0.496	0.139	0.092	0.124	0.102	0.270	0.195		0.062	0.047	0.104
7010	chr6	139907939	139914509	+	0	NA	Intergenic	Intergenic	-115491	NR_033919	645434	Hs.666240	NR_033919	ENSG00000238099	LINC01625	-	long intergenic non-protein coding RNA 1625	ncRNA	1.095	1.976	1.947	1.355	1.509	0.443	0.993	2.311	0.195	0.837	0.387	0.844	2.625	0.525	0.100	0.456	0.377	3.397	8.928	0.675	0.862	13.520	5.026	0.574	0.625	0.486	0.755	1.998	1.740	0.627	0.311	0.290	0.664	3.485	2.023	0.683	nan	1.295	0.856	0.921	0.934	0.535	0.256	0.993	0.844	0.101	0.295	0.422	0.074
6579	chr6	1669351	1694988	+	0	NA	intron (NM_001500, intron 9 of 10)	AluJo|SINE|Alu	71488	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding	1.009	0.957	1.463	0.846	0.565	0.366	0.329	1.044	0.164	0.365	0.178	0.319	0.219	0.063	0.114	0.473	0.342	2.062	4.421	0.521	0.485	0.330	0.177	0.455	0.427	0.675	1.062	0.513	0.805	0.470	0.332	0.207	0.301	0.223	0.245	0.258	0.383	1.056	0.597	0.055	0.106	0.018	0.136	0.329	0.319	0.170	0.435	0.078	0.077
5655	chr3	170971855	170988140	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-155449	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA	1.134	3.704	0.735	0.179	0.567	0.256	0.456	0.871	0.139	0.174	0.128	0.088	0.381	0.028	0.068	0.286	0.185	0.369	0.813	0.449	0.759	0.248	0.169	0.332	0.228	2.942	3.582	0.795	0.738	0.913	0.612	0.180	0.382	0.067	0.096	0.280	0.393	0.636	0.701	0.230	0.122	0.018	0.901	0.456	0.088	0.054	0.049	0.049	0.173
7951	chr8	138759724	138767204	+	0	NA	Intergenic	AluSp|SINE|Alu	-337633	NR_125428	101927915	Hs.695851	NR_125428		LOC101927915	-	uncharacterized LOC101927915	ncRNA	nan	0.668	1.239	0.141	0.226	0.107	1.210	0.106	0.021	0.357	0.174	2.747	18.239		0.085	0.289	0.179	0.136	0.222	1.351	1.425	2.148	1.201	nan	0.089	0.297	0.640	0.787	1.056	0.329	0.171	0.169	0.114	4.655	4.995	0.561	1.052	1.370	0.819	0.827	0.136	1.515	0.064	1.210	2.747	0.011	0.840	0.013	0.082
6777	chr6	43948037	43981712	+	0	NA	non-coding (NR_125865, exon 4 of 4)	non-coding (NR_125865, exon 4 of 4)	-3463	NM_001171992	221416	Hs.531926	NM_153246	ENSG00000181577	C6orf223	-	chromosome 6 open reading frame 223	protein-coding	1.596	1.619	1.069	0.723	2.015	1.005	0.704	1.158	0.243	0.283	0.182	1.152	1.091	0.129	0.103	0.528	0.920	0.809	1.844	1.036	1.014	1.895	0.947	1.187	1.364	0.354	0.581	2.480	nan	1.110	0.940	0.602	0.838	0.778	0.703	0.667	1.397	1.170	0.785	2.908	2.172	0.226	0.354	0.704	1.152	0.171	0.805	0.247	0.419
6236	chr5	36739912	36747571	+	0	NA	Intergenic	Intergenic	133055	NR_046262	646719	Hs.355684	NR_046262		NIPBL-AS1	NIPBL-AS	NIPBL antisense RNA 1 (head to head)	ncRNA	1.402	2.905	7.634	3.818	0.510	0.167	0.267	0.837	0.169	0.570	0.277	2.364	5.237	0.298	0.084	2.904	2.179	2.912	3.762	2.768	2.039	0.536	0.143	6.256	6.125	0.653	0.895	6.241	8.702	3.598	3.208	7.399	11.622	0.117	0.138	0.956	2.141	0.711	0.747	0.160	0.314	0.013	1.231	0.267	2.364	0.139	0.199	11.824	0.778
580	chr1	155879273	155882597	+	0	NA	promoter-TSS (NM_001256821)	promoter-TSS (NM_001256821)	-229	NM_001256821	6016	Hs.491234	NM_006912	ENSG00000143622	RIT1	NS8|RIBB|RIT|ROC1	Ras like without CAAX 1	protein-coding	nan	nan	2.356	1.399	2.469	1.148	1.331	2.282	0.388	2.146	0.848	1.994	19.348	2.055	0.156	1.721	3.493	4.079	5.681	4.805	nan	4.860	1.785	0.256	0.378	2.178	3.128	3.363	3.812	2.135	2.193	1.833	4.080	1.916	2.165	2.421	3.486	1.674	0.871	1.218	2.567	0.315	1.214	1.331	1.994	0.437	3.330	1.183	0.853
2800	chr14	105876651	105889365	+	0	NA	TTS (NR_125384)	TTS (NR_125384)	3068	NR_125384	100507437	Hs.676548	NR_125384	ENSG00000251602	LOC100507437	-	uncharacterized LOC100507437	ncRNA	4.282	1.620	3.202	2.114	1.949	0.918	3.138	1.069	0.257	1.220	0.517	3.193	2.871	1.593	0.117	1.957	2.542	1.578	2.200	5.373	5.231	5.910	1.751	1.831	1.713	1.750	2.540	2.939	4.588	4.876	5.243	1.442	2.532	1.703	1.770	1.330	1.724	0.690	0.351	2.202	1.493	0.422	1.207	3.138	3.193	0.834	0.974	0.621	0.790
7791	chr8	93964810	93979440	+	0	NA	intron (NM_001171797, intron 1 of 4)	L1M6|LINE|L1	5692	NM_001191036	286144	Hs.440643	NM_001171795	ENSG00000205133	TRIQK	C8orf83|PRO0845|UPF0599	triple QxxK/R motif containing	protein-coding	nan	1.643	2.378	2.319	2.793	1.565	0.874	1.220	0.153	0.495	0.276	4.255	10.381	0.407	0.083	1.093	1.174	1.411	nan	6.041	6.142	2.004	1.074	1.892	1.970	1.562	1.825	3.775	4.882	2.233	2.331	0.816	1.442	2.539	2.371	1.612	2.609	1.565	0.784	2.971	1.891	0.599	0.937	0.874	4.255	0.285	0.935	0.914	0.637
6632	chr6	16843975	16858455	+	0	NA	Intergenic	Intergenic	-89494	NM_000332	6310	Hs.434961	NM_000332	ENSG00000124788	ATXN1	ATX1|D6S504E|SCA1	ataxin 1	protein-coding	1.433	nan	0.667	0.060	0.797	0.433	2.139	1.407	0.154	0.227	0.127	0.339	0.146	0.045	0.070	0.455	0.297	0.404	0.894	0.463	0.395	1.618	0.309	0.280	0.317	1.097	1.259	0.162	0.159	1.095	0.884	0.270	0.237	3.263	5.346	0.394	0.860	2.348	1.246	0.015	0.130	0.767	0.198	2.139	0.339		0.042	0.171	0.248
5818	chr4	1711746	1715684	+	0	NA	exon (NM_006527, exon 2 of 8)	exon (NM_006527, exon 2 of 8)	753	NM_001306074	7884	Hs.298345	NM_006527	ENSG00000163950	SLBP	HBP	stem-loop binding protein	protein-coding	6.277	3.688	nan	7.752	6.585	3.591	5.955	3.111	0.328	2.344	1.763	7.202	10.447	4.883	0.074	9.475	8.868	10.206	13.065	8.146	9.322	nan	6.059	14.874	15.698	3.313	4.555	9.691	15.770	8.488	9.197	8.509	13.047	3.978	6.351	6.520	4.915	nan	2.027	4.404	8.863	1.301	5.380	5.955	7.202	0.570	1.712	2.852	2.709
2523	chr14	30259234	30300089	+	0	NA	intron (NM_001330069, intron 1 of 18)	intron (NM_001330069, intron 1 of 18)	117238	NM_002742	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding	1.263	1.222	0.873	0.280	0.786	0.349	0.222	0.772	0.185	0.226	0.241	0.438	1.402	0.103	0.111	0.259	0.201	0.458	0.412	0.697	0.776	0.854	0.295	0.354	0.273	4.325	4.671	0.810	0.755	0.640	0.330	0.134	0.250	1.075	1.205	0.188	0.314	0.679	0.439	1.317	0.413	0.267	0.147	0.222	0.438	0.037	0.246	0.036	0.056
4618	chr2	178103049	178132933	+	0	NA	intron (NM_001313902, intron 1 of 3)	intron (NM_001313902, intron 1 of 3)	2747	NR_036075	100422824		NR_036075	ENSG00000265396	MIR3128	mir-3128	microRNA 3128	ncRNA	2.776	2.369	2.465	1.861	2.010	1.159	1.533	2.279	0.318	1.142	0.485	1.741	3.516	1.839	0.104	1.576	2.013	4.067	8.632	2.107	1.741	2.281	0.841	3.437	3.494	2.040	2.779	4.389	6.867	2.538	2.934	1.634	3.101	1.439	1.816	1.690	2.370	1.043	0.717	1.393	1.114	0.335	1.043	1.533	1.741	0.673	0.488	1.586	0.631
5103	chr21	35756851	35784493	+	0	NA	Intergenic	Intergenic	2698	NM_001282537	101928147	Hs.303798	NM_001282537	ENSG00000222018	C21orf140	-	chromosome 21 open reading frame 140	protein-coding	0.759	0.613	0.817	0.143	0.271	0.111	0.505	0.122	0.093	0.091	0.069	0.169	0.914	0.047	0.060	0.441	0.407	0.307	0.413	0.774	0.889	0.532	0.209	0.348	0.309	0.250	0.489	0.985	0.906	0.436	0.257	0.212	0.258	0.210	0.277	0.206	0.365	nan	0.557	2.501	0.296	0.055	0.080	0.505	0.169	0.042	0.217	0.073	0.099
1257	chr10	131659291	131689009	+	0	NA	intron (NM_001005463, intron 7 of 15)	intron (NM_001005463, intron 7 of 15)	-32512	NR_036179	100422873		NR_036179	ENSG00000266676	MIR4297	-	microRNA 4297	ncRNA	1.108	0.669	1.907	0.042	4.283	2.649	0.604	0.066	0.060	0.116	0.061	1.388	0.432	0.036	0.088	1.998	2.734	0.119	0.184	1.096	0.926	0.056	0.036	0.383	0.391	0.584	0.836	0.113	0.127	0.644	0.953	0.663	1.058	0.946	0.710	1.769	2.668	1.567	0.867	0.127	0.069	0.388	2.111	0.604	1.388	0.588	0.038	1.034	0.506
31	chr1	2984263	3005056	+	0	NA	intron (NM_199454, intron 1 of 16)	intron (NM_199454, intron 1 of 16)	8917	NM_199454	63976	Hs.99500	NM_022114	ENSG00000142611	PRDM16	CMD1LL|KMT8F|LVNC8|MEL1|PFM13	PR/SET domain 16	protein-coding	0.714	nan	0.450	0.068	0.679	0.424	0.203	0.043	0.069	0.023	0.042	0.029	0.285	0.532	0.099	0.156	0.088	0.196	0.288	0.234	0.323	0.051	0.053	0.148	0.092	0.092	nan	nan	0.112	nan	0.055	0.123	0.133	0.049	0.070	0.063	0.075	0.128	0.178	7.022	0.030	0.019	0.015	0.203	0.029	0.140	0.010		0.018
8000	chr8	145128182	145139118	+	0	NA	exon (NM_019037, exon 1 of 3)	exon (NM_019037, exon 1 of 3)	128	NM_019037	54512	Hs.632041	NM_019037	ENSG00000178896	EXOSC4	RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A	exosome component 4	protein-coding	4.171	2.082	nan	3.457	3.445	1.684	2.312	1.766	0.385	0.774	0.375	4.446	6.968	1.380	0.084	3.479	3.736	5.533	5.392	nan	5.275	nan	1.230	7.564	7.598	2.139	2.895	2.322	3.184	2.438	2.910	2.547	4.512	2.057	2.109	2.151	3.267	1.982	1.087	1.627	2.273	0.324	0.807	2.312	4.446	0.827	3.962	1.023	0.793
4717	chr2	218781139	218809659	+	0	NA	intron (NM_022648, intron 1 of 32)	intron (NM_022648, intron 1 of 32)	-10440	NM_001308022	7145	Hs.471381	NM_022648	ENSG00000079308	TNS1	MST091|MST122|MST127|MSTP091|MSTP122|MSTP127|MXRA6|PPP1R155|TNS	tensin 1	protein-coding	nan	1.043	nan	0.569	0.529	0.213	0.188	0.192	0.046	0.181	0.116	0.525	0.827	0.068	0.091	0.614	0.924	0.226	0.336	0.561	0.529	0.189	0.071	0.642	0.663	0.678	1.213	5.167	nan	0.442	0.331	0.471	0.533	0.058	0.064	0.370	0.534	0.575	0.438	2.159	0.209	0.016	0.069	0.188	0.525	0.255	0.046	0.125	0.112
4093	chr19	44306939	44314112	+	0	NA	intron (NM_182573, intron 1 of 4)	MER1A|DNA|hAT-Charlie	-3912	NM_001031749	284348	Hs.44289	NM_182573	ENSG00000159871	LYPD5	PRO4356	LY6/PLAUR domain containing 5	protein-coding	0.720	0.828	0.780	0.074	0.236	0.135	0.212	0.106	0.090	0.195	0.105	0.134	0.258	0.128	0.107	0.453	0.374	9.041	8.828	0.384	0.410	0.931	0.274	0.374	0.441	0.134	0.367	0.233	0.239	0.278	0.123	0.347	0.371	0.204	0.222	0.171	0.229	1.435	0.973	0.039	0.125	0.039	0.033	0.212	0.134		0.021	0.069	0.035
7513	chr7	139863649	139878302	+	0	NA	intron (NM_030647, intron 1 of 19)	L1ME3|LINE|L1	5766	NM_030647	80853	Hs.308710	NM_030647	ENSG00000006459	KDM7A	JHDM1D	lysine demethylase 7A	protein-coding	nan	nan	nan	1.265	0.810	0.561	0.698	0.488	0.121	0.637	0.490	3.730	1.949	1.516	0.186	1.002	1.473	1.508	2.124	1.478	1.490	nan	0.456	4.252	3.991	0.977	nan	1.316	1.797	nan	0.998	1.121	1.951	0.581	0.441	1.035	1.636	1.533	nan	0.556	1.339	0.135	0.535	0.698	3.730	0.133	0.859	0.445	0.118
4439	chr2	97547840	97565401	+	0	NA	intron (NM_016490, intron 2 of 4)	intron (NM_016490, intron 2 of 4)	4279	NM_001172667	51252	Hs.107922	NM_016490	ENSG00000168754	FAM178B	-	family with sequence similarity 178 member B	protein-coding	1.259	1.211	2.013	1.877	0.700	0.374	0.252	0.093	0.137	1.267	0.414	1.550	2.249	0.064	0.042	1.220	1.771	0.242	0.627	2.697	2.092	1.799	0.681	1.445	1.703	0.725	1.234	7.887	6.829	0.531	0.536	0.485	0.707	0.714	0.686	0.433	0.681	1.180	0.749	3.409	0.928	0.183	0.222	0.252	1.550	0.214	1.506	0.209	0.091
4160	chr19	59048406	59058200	+	0	NA	promoter-TSS (NM_001316980)	promoter-TSS (NM_001316980)	-224	NM_001316980	84878	Hs.515662	NM_032792	ENSG00000119574	ZBTB45	ZNF499	zinc finger and BTB domain containing 45	protein-coding	2.904	1.770	2.444	2.447	5.194	2.620	2.992	0.930	0.330	0.980	0.471	4.277	4.119	1.897	0.115	4.586	6.196	2.197	3.127	5.095	4.723	7.689	3.496	2.502	2.684	1.771	2.571	2.571	4.195	4.230	3.969	2.545	3.860	3.533	3.005	3.585	4.120	2.623	1.389	1.933	2.426	0.743	1.988	2.992	4.277	1.152	0.858	1.220	1.466
7647	chr8	37698115	37708374	+	0	NA	intron (NM_018310, intron 3 of 3)	FRAM|SINE|Alu	4187	NM_018310	55290	Hs.709301	NM_018310	ENSG00000104221	BRF2	BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor subunit	protein-coding	1.707	2.406	nan	7.353	1.582	0.864	1.746	1.041	0.202	1.168	0.728	3.722	2.847	1.171	0.095	2.326	2.967	2.345	3.721	4.413	4.762	3.381	1.106	3.795	3.888	0.919	1.257	2.414	3.477	1.767	1.671	1.327	2.314	1.885	1.726	1.482	1.561	2.071	1.136	1.308	1.687	0.268	0.372	1.746	3.722	0.282	1.100	0.907	0.607
3336	chr17	27068963	27075042	+	0	NA	intron (NM_004295, intron 1 of 6)	intron (NM_004295, intron 1 of 6)	979	NM_004295	9618	Hs.8375	NM_004295	ENSG00000076604	TRAF4	CART1|MLN62|RNF83	TNF receptor associated factor 4	protein-coding	nan	nan	8.283	2.204	5.754	3.035	3.329	2.274	0.531	1.534	0.617	4.172	11.697	6.147	0.132	4.132	6.289	6.089	10.302	6.411	5.182	5.969	1.664	7.805	7.657	2.442	3.383	12.043	12.971	5.909	5.772	2.423	5.028	4.448	3.879	3.614	nan	2.429	1.421	5.547	4.630	1.201	1.977	3.329	4.172	1.880	3.051	3.147	2.827
4629	chr2	182435950	182463769	+	0	NA	intron (NM_001030311, intron 2 of 13)	L2a|LINE|L2	71975	NM_001160277	375298	Hs.732358	NM_201548	ENSG00000188452	CERKL	RP26	ceramide kinase like	protein-coding	1.871	1.033	1.044	0.104	1.134	0.611	0.483	0.109	0.063	0.140	0.115	0.314	1.027	0.027	0.071	0.327	0.183	0.162	0.217	0.558	0.843	2.399	0.781	0.352	0.404	nan	4.644	1.411	1.302	4.293	4.061	0.128	0.236	1.618	1.479	1.505	nan	0.635	0.397	0.173	0.112	0.535	0.276	0.483	0.314	0.460	0.033	0.082	1.086
5104	chr21	35813760	35837217	+	0	NA	intron (NM_001270404, intron 1 of 1)	L4|LINE|RTE	2619	NM_001127670	3753	Hs.121495	NM_000219	ENSG00000180509	KCNE1	ISK|JLNS|JLNS2|LQT2/5|LQT5|MinK	potassium voltage-gated channel subfamily E regulatory subunit 1	protein-coding	0.727	0.569	0.727	0.163	0.288	0.140	0.608	0.121	0.048	0.167	0.144	0.251	1.016	0.027	0.042	0.393	0.316	0.289	0.399	0.873	0.890	0.984	0.381	0.242	0.320	0.160	0.343	0.830	0.887	0.479	0.257	0.189	0.208	0.226	0.252	0.195	0.324	nan	0.664	3.520	1.213	0.032	0.064	0.608	0.251	0.090	0.067	0.031	0.060
968	chr1	245019029	245033092	+	0	NA	intron (NM_004501, intron 1 of 13)	intron (NM_004501, intron 1 of 13)	1767	NM_004501	3192	Hs.106212	NM_004501	ENSG00000153187	HNRNPU	HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	nan	5.290	nan	5.597	5.611	3.076	3.941	2.572	0.286	2.974	1.441	4.202	5.702	3.669	0.194	4.220	4.020	6.640	9.439	7.888	7.519	6.091	2.940	11.772	12.522	3.190	3.843	3.920	5.847	4.344	5.014	1.513	2.917	4.468	4.769	5.942	5.868	2.392	1.399	3.074	1.817	1.059	1.906	3.941	4.202	0.820	1.916	0.803	1.867
675	chr1	175829808	175842624	+	0	NA	Intergenic	Intergenic	-10263	NR_125964	101928751		NR_125964	ENSG00000224718	LINC01657	-	long intergenic non-protein coding RNA 1657	ncRNA	nan	nan	nan	0.055	0.227	0.176	0.268	0.111	0.042	0.106	0.143	0.075	0.355	0.051	0.053	5.438	6.500	7.775	7.004	nan	0.853	0.479	0.235	0.544	0.624	0.248	0.404	0.322	0.422	0.375	0.221	5.876	11.294	0.071	0.095	0.346	nan	0.713	0.672	0.025	0.194	0.045	0.099	0.268	0.075	0.112	0.063	7.302	0.124
7300	chr7	57925778	57929435	+	0	NA	Intergenic	Intergenic	417723	NM_001159279	441234	Hs.533121	NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding	nan	3.574	0.766	0.089	0.259	0.209	0.528	0.160	0.048		0.202	5.334	1.203	3.736	0.245	11.307	15.416	0.117	0.202	0.302	0.275	0.938	0.362	0.216	0.220	0.183	0.370	0.373	0.379	0.881	0.864	1.432	2.630	0.126	0.227	0.523	0.507	0.214	0.148	0.007	0.048		0.128	0.528	5.334	0.052	0.071	0.273	0.026
382	chr1	84626216	84634496	+	0	NA	promoter-TSS (NM_001300915)	promoter-TSS (NM_001300915)	33	NM_001300915	5567	Hs.487325	NM_002731	ENSG00000142875	PRKACB	PKA C-beta|PKACB	protein kinase cAMP-activated catalytic subunit beta	protein-coding	1.095	nan	nan	0.191	0.559	0.394	0.407	0.389	0.194	1.716	1.025	1.307	0.359	0.066	0.104	1.578	2.620	0.260	0.284	0.338	0.586	5.101	3.353	0.199	0.210	6.974	7.179	0.833	0.858	2.027	1.655	2.635	3.499	0.905	1.459	0.472	1.115	1.235	0.644	0.047	0.322	0.114	0.056	0.407	1.307	0.024	0.531	2.645	0.194
3541	chr17	72172920	72205112	+	0	NA	Intergenic	Intergenic	-10779	NM_000999	6169	Hs.380953	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding	1.950	1.820	1.966	1.026	6.118	3.037	1.517	0.271	0.116	0.690	0.496	1.068	2.847	0.427	0.095	1.582	2.045	0.940	1.188	2.674	2.579	3.602	1.085	0.480	0.498	nan	1.314	3.702	3.255	2.793	2.757	1.109	1.719	2.790	3.004	1.675	4.200	nan	1.025	0.389	1.206	0.672	0.565	1.517	1.068	0.275	1.320	1.198	1.438
2846	chr15	37883711	37888956	+	0	NA	Intergenic	Intergenic	-340475	NM_001330255	145942	Hs.179646	NM_152453	ENSG00000166069	TMCO5A	TMCO5	transmembrane and coiled-coil domains 5A	protein-coding	0.805	nan	nan	1.493	3.107	1.693	0.120	0.128	0.030	3.718	1.497	0.045	0.523	0.041	0.058	0.223	0.179	0.146	0.133	2.543	2.432	0.105	0.070	0.088	0.127	0.183	0.461	3.869	2.052	0.402	0.232	0.111	0.210	10.359	10.265	0.188	0.307	1.744	1.192	0.004	0.862	2.545	0.014	0.120	0.045	0.019	0.231	0.057	0.046
4208	chr2	8815496	8834221	+	0	NA	TTS (NM_002166)	TTS (NM_002166)	2745	NM_002166	3398	Hs.180919	NM_002166	ENSG00000115738	ID2	GIG8|ID2A|ID2H|bHLHb26	inhibitor of DNA binding 2, HLH protein	protein-coding	2.517	1.848	2.855	5.861	4.950	2.594	3.914	2.345	0.122	3.456	1.570	8.722	16.146	6.108	0.167	3.193	3.195	9.680	12.404	10.667	9.349	7.578	3.521	5.678	5.292	3.568	4.269	4.669	5.515	3.247	3.858	2.505	5.213	2.379	2.356	2.438	2.553	2.671	1.476	4.369	6.655	0.595	4.049	3.914	8.722	1.935	3.334	2.733	0.509
7019	chr6	144933936	144947417	+	0	NA	intron (NM_007124, intron 50 of 73)	intron (NM_007124, intron 50 of 73)	213885	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA	nan	0.889	nan	0.097	0.370	0.107	0.255	0.206	0.096	0.152	0.123	0.424	0.347	0.096	0.105	0.455	0.251	0.815	0.678	0.496	0.622	0.814	0.416	0.250	0.251	0.079	0.170	0.142	0.128	0.631	0.271	0.134	0.254	4.065	5.701	0.187	0.295	0.287	0.273	0.029	0.139	1.678	0.029	0.255	0.424	0.041	0.038	0.044	0.094
139	chr1	23849870	23859199	+	0	NA	non-coding (NR_110799, exon 3 of 3)	non-coding (NR_110799, exon 3 of 3)	3178	NM_004091	1870	Hs.194333	NM_004091	ENSG00000007968	E2F2	E2F-2	E2F transcription factor 2	protein-coding	4.742	2.867	nan	6.536	3.385	1.858	2.017	0.769	0.103	3.195	1.135	3.458	11.450	2.680	0.123	3.416	3.081	1.956	3.623	14.043	12.059	5.081	1.696	4.026	4.600	4.540	5.611	6.626	8.636	5.270	5.201	1.448	2.013	4.548	5.170	3.742	5.392	3.218	1.635	8.036	5.953	1.325	3.121	2.017	3.458	1.560	1.742	0.444	1.368
3863	chr18	60376353	60390580	+	0	NA	exon (NM_194449, exon 1 of 17)	exon (NM_194449, exon 1 of 17)	794	NM_194449	23239	Hs.465337	NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	2.286	2.060	2.120	1.324	0.679	0.322	2.082	0.648	0.102	1.266	0.531	1.998	3.516	0.525	0.061	2.499	3.192	2.165	3.277	3.662	2.922	6.458	2.599	8.657	nan	1.314	nan	3.095	5.158	1.669	2.075	1.291	3.253	5.542	6.175	1.882	1.907	3.124	2.045	0.759	2.221	1.728	0.727	2.082	1.998	0.298	0.870	1.072	0.633
3008	chr16	110023	155768	+	0	NA	intron (NM_001015054, intron 2 of 3)	intron (NM_001015054, intron 2 of 3)	4726	NM_001015052	4350	Hs.459596	NM_002434	ENSG00000103152	MPG	AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg	N-methylpurine DNA glycosylase	protein-coding	1.029	nan	0.981	1.201	0.395	0.249	0.422	0.329	0.109	0.410	0.232	0.388	2.886	0.581	0.074	0.601	0.928	0.336	0.553	0.832	0.902	nan	0.498	0.768	0.788	0.443	nan	1.707	1.774	0.590	0.426	0.364	0.374	0.353	0.397	0.350	0.602	0.968	0.560	4.820	0.927	0.066	0.066	0.422	0.388	0.129	0.511	0.067	0.165
1246	chr10	125256168	125286880	+	0	NA	Intergenic	Intergenic	-154347	NM_153442	2849	Hs.12751	NM_153442	ENSG00000154478	GPR26	-	G protein-coupled receptor 26	protein-coding	nan	0.451	0.813	0.074	0.644	0.347	0.209	0.091	0.042	0.046	0.067	0.176	0.508	0.025	0.069	2.313	2.076	4.046	3.622	0.158	0.191	1.070	0.453	0.204	0.223	0.076	0.183	0.269	0.413	0.151	0.093	2.251	3.187	0.049	0.059	0.109	0.175	0.454	0.375	0.031	0.101		0.102	0.209	0.176	0.041	0.017	2.635	0.040
4377	chr2	58723800	58751412	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-10282	NR_033873	400955	Hs.503210	NR_033873	ENSG00000233723	LINC01122	-	long intergenic non-protein coding RNA 1122	ncRNA	1.060	nan	0.925	0.223	0.679	0.436	0.771	0.193	0.099	0.874	0.536	0.485	0.687	0.110	0.101	0.390	0.348	0.225	0.486	0.780	0.787	4.416	1.694	0.316	0.343	1.874	2.005	1.954	1.232	1.553	1.216	0.167	0.230	1.060	0.674	0.501	1.186	1.105	0.765	0.047	0.483	0.436	0.956	0.771	0.485	0.070	0.102	0.075	0.205
7725	chr8	65887779	65911568	+	0	NA	Intergenic	Intergenic	-188325	NM_001324112	9420	Hs.657330	NM_004820	ENSG00000172817	CYP7B1	CBAS3|CP7B|SPG5A	cytochrome P450 family 7 subfamily B member 1	protein-coding	1.364	0.652	0.780	0.133	0.314	0.067	0.176	0.091	0.135	0.067	0.097	0.262	0.249	0.036	0.082	0.459	0.396	0.743	0.354	1.003	1.075	0.197	0.114	0.110	0.120	5.626	nan	0.131	0.122	nan	2.071	0.243	0.538	0.232	0.161	0.528	0.861	0.623	0.664	0.017	0.047	0.036	0.414	0.176	0.262	0.216	0.047	0.083	0.057
7958	chr8	140431726	140448583	+	0	NA	Intergenic	MER49|LTR|ERV1	275145	NR_104210	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding	1.435	0.924	nan	0.214	0.265	0.132	0.269	0.093	0.114	0.034	0.087	0.073	1.080	0.064	0.085	0.325	0.217	0.107	0.128	nan	0.694	nan	0.132	0.165	0.183	0.232	0.312	0.583	0.580	0.826	0.544	0.108	0.208	0.080	0.063	2.861	7.434	0.676	0.595	0.117	0.347	0.023	0.075	0.269	0.073	0.327	0.109	0.035	2.693
1293	chr11	8277855	8313798	+	0	NA	Intergenic	L1ME4a|LINE|L1	-5644	NM_001270428	4004	Hs.654426	NM_002315	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1	protein-coding	2.173	1.230	0.898	0.345	1.452	0.706	0.599	0.143	0.049	0.292	0.169	1.233	0.731	0.057	0.069	1.660	2.539	0.281	0.329	1.641	1.488	0.972	0.409	0.339	0.373	1.287	1.609	0.985	1.422	4.633	5.245	0.422	0.723	1.434	1.331	1.227	3.447	0.932	0.633	2.724	0.459	0.630	0.823	0.599	1.233	0.349	0.150	0.182	1.763
4000	chr19	19169034	19176501	+	0	NA	Intergenic	MIR|SINE|MIR	-2003	NM_001321544	284439	Hs.303669	NM_178526	ENSG00000181035	SLC25A42	-	solute carrier family 25 member 42	protein-coding	1.768	1.095	1.593	4.912	0.992	0.473	0.551	0.421	0.144	0.421	0.222	1.201	2.132	0.463	0.072	0.857	1.391	0.951	1.237	1.929	1.948	1.776	0.524	0.819	0.869	1.106	1.473	8.773	14.570	2.612	2.887	0.535	0.702	0.577	0.607	1.561	3.132	5.471	2.268	0.933	1.501	0.090	0.276	0.551	1.201	0.196	3.948	0.145	0.795
4789	chr2	241499197	241509193	+	0	NA	TTS (NM_001033575)	TTS (NM_001033575)	-3668	NM_001308375	51281	Hs.656615	NM_016552	ENSG00000144504	ANKMY1	ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding	2.766	nan	4.106	3.371	3.618	2.363	2.570	0.627	0.064	1.303	0.973	3.416	8.695	3.009	0.150	4.965	6.542	2.665	4.721	3.561	3.187	4.175	1.597	5.851	5.613	2.584	3.189	4.865	6.377	3.121	3.618	2.549	4.409	1.850	1.614	3.413	3.216	1.975	0.816	5.412	3.560	0.390	1.055	2.570	3.416	0.319	3.435	1.585	1.357
1518	chr11	73022688	73042339	+	0	NA	intron (NM_014786, intron 1 of 20)	MIRb|SINE|MIR	12850	NM_014786	9828	Hs.533719	NM_014786	ENSG00000110237	ARHGEF17	P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF	Rho guanine nucleotide exchange factor 17	protein-coding	nan	0.625	0.764	0.077	0.382	0.229	0.192	2.391	0.493	0.081	0.079	0.285	0.751	0.414	0.114	0.972	1.520	0.404	0.486	0.996	1.018	0.575	0.252	1.235	1.155	3.183	3.518	0.988	1.458	1.825	1.473	0.601	0.689	0.325	0.313	0.968	2.513	1.002	0.703	0.311	0.162	0.024	0.230	0.192	0.285	1.339	0.212	0.081	0.703
178	chr1	30346172	30356038	+	0	NA	Intergenic	Intergenic	159354	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA	0.691	nan	0.495	2.955	1.662	1.074	0.170	0.023	0.114	0.956	0.656	6.867	8.130	0.077	0.125	0.284	0.222	0.065	0.119	4.918	5.587	nan	0.067	0.120	0.133	0.181	0.414	2.617	2.567	nan	0.203	0.249	0.281	1.245	0.992	0.188	0.227	2.161	nan	4.106	3.871	0.298	0.024	0.170	6.867	0.147	0.091	0.030	0.038
3444	chr17	47037726	47054224	+	0	NA	promoter-TSS (NM_004123)	promoter-TSS (NM_004123)	-20	NM_004123	2695	Hs.1454	NM_004123	ENSG00000159224	GIP	-	gastric inhibitory polypeptide	protein-coding	1.169	0.928	nan	0.192	0.360	0.166	0.172	0.152	0.215	0.079	0.125	0.080	0.324	0.145	0.124	0.277	0.185	0.189	0.248	0.414	nan	0.373	0.114	0.294	0.329	0.203	0.466	0.467	nan	0.918	0.731	0.149	0.160	0.098	0.120	2.121	8.248	0.328	0.428	0.042	0.140	0.012	0.019	0.172	0.080	0.305	0.123	0.012	3.340
6267	chr5	55525139	55535504	+	0	NA	Intergenic	L2a|LINE|L2	-1135	NM_024669	79722	Hs.436214	NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding	nan	nan	0.711	0.228	0.240	0.123	0.262	0.116	0.095	0.318	0.095	0.046	0.392	0.063	0.089	0.233	0.129	0.200	0.267	0.400	0.493	nan	0.070	0.125	0.170	0.121	0.214	0.245	0.297	nan	8.883	0.103	0.038	0.115	0.071	0.286	0.601	0.698	0.529	0.005	0.422	0.028	0.062	0.262	0.046	0.056	0.020		0.985
1974	chr12	57844315	57856796	+	0	NA	exon (NM_031479, exon 2 of 2)	exon (NM_031479, exon 2 of 2)	1481	NM_031479	83729	Hs.632713	NM_031479	ENSG00000139269	INHBE	-	inhibin beta E subunit	protein-coding	nan	1.839	2.412	1.959	1.499	0.912	1.520	1.236	0.130	1.546	0.264	0.580	1.559	2.547	0.130	nan	1.972	0.899	1.335	1.274	nan	3.319	1.128	6.259	6.814	0.950	nan	5.402	nan	3.930	5.003	2.115	2.025	2.646	4.421	2.947	9.114	1.746	0.998	1.521	2.583	0.434	1.865	1.520	0.580	1.045	0.934	0.905	2.564
5702	chr3	177955144	177973332	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-172751	NR_046786	100874330	Hs.201902	NR_046786	ENSG00000223941	LINC01014	KCNMB2-IT1	long intergenic non-protein coding RNA 1014	ncRNA	1.304	1.162	1.195	1.367	0.565	0.283	0.682	0.292	0.151	0.251	0.269	0.230	0.662	0.077	0.074	0.252	0.168	0.263	0.381	0.460	0.478	7.722	4.695	0.194	0.205	0.998	0.976	0.572	0.558	0.725	0.300	0.118	0.163	0.614	0.688	0.572	1.292	0.508	0.393	0.040	0.112	0.124	1.488	0.682	0.230	0.038	0.051	0.022	0.354
8394	chrX	73509442	73513907	+	0	NA	intron (NR_028379, intron 1 of 6)	intron (NR_028379, intron 1 of 6)	1735	NR_028379	100302692	Hs.349570	NR_028379	ENSG00000230590	FTX	LINC00182|MIR374AHG|NCRNA00182	FTX transcript, XIST regulator (non-protein coding)	ncRNA	6.750	4.337	nan	5.478	8.058	3.622	3.504	2.233	0.435	2.756	1.139	4.286	11.975	4.806	0.181	7.724	6.803	3.576	5.129	12.738	10.767	9.861	3.774	12.808	13.180	5.800	6.339	7.675	13.028	15.092	14.092	4.304	6.866	5.311	7.421	5.088	5.091	4.560	1.908	5.141	2.971	0.943	3.730	3.504	4.286	1.082	2.294	2.943	1.111
4350	chr2	53489769	53533846	+	0	NA	Intergenic	MIRb|SINE|MIR	-483113	NM_001346127	494143	Hs.585944	NM_001008708	ENSG00000143942	CHAC2	-	ChaC cation transport regulator homolog 2	protein-coding	5.790	nan	5.379	0.092	0.194	0.117	0.128	0.183	0.067	0.089	0.161	0.097	0.287	0.047	0.119	0.319	0.180	0.164	0.235	0.280	0.362	0.137	0.066	0.371	0.346	0.392	0.645	0.378	0.339	0.430	0.279	0.122	0.221	7.236	9.191	0.275	0.434	0.311	0.317	0.038	0.135	1.100	0.067	0.128	0.097	0.051	0.143	0.036	0.065
1374	chr11	33711318	33724276	+	0	NA	Intergenic	L2a|LINE|L2	4489	NM_001166692	100131378	Hs.709466	NM_001166692	ENSG00000205177	C11orf91	-	chromosome 11 open reading frame 91	protein-coding	1.045	3.265	nan	0.469	0.356	0.296	2.391	0.763	0.012	0.797	0.310	0.703	8.084	0.334	0.118	0.844	0.974	1.839	5.908	1.221	1.100	0.770	0.282	0.610	0.569	3.561	4.247	0.417	0.715	0.615	0.479	0.371	0.536	1.762	1.776	0.472	nan	1.533	1.001	1.064	0.377	0.440	0.061	2.391	0.703	0.404	0.485	0.077	0.278
2303	chr13	50959484	50976272	+	0	NA	intron (NR_109974, intron 3 of 6)	MER1A|DNA|hAT-Charlie	133707	NR_125753	103689915	Hs.722230	NR_125753	ENSG00000229323	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA	1.951	nan	nan	0.780	0.271	0.143	0.530	0.520	0.134	0.439	0.264	0.920	0.164	0.058	0.101	0.600	0.507	0.977	0.876	0.850	1.041	nan	0.702	0.964	0.994	2.577	2.860	1.597	1.702	2.360	2.049	0.423	0.952	1.771	1.987	1.856	nan	0.236	0.242	0.102	0.811	0.544	0.312	0.530	0.920	0.882	0.230	0.617	2.429
2807	chr14	106195086	106222327	+	0	NA	Intergenic	Intergenic	-69562	NR_046211	2003	Hs.744419	NR_046211		ELK2AP	ELK2|ELK2.1|ELK2P1	ELK2A, member of ETS oncogene family, pseudogene	pseudo	1.209	0.651	3.253	0.070	0.189	0.106	0.139	0.071	0.116	0.052	0.076	0.053	0.284	0.056	0.080	0.403	0.433	0.104	0.126	0.293	0.239	0.295	0.130	0.061	0.082	0.158	0.333	0.119	0.138	0.437	0.483	0.331	0.331	0.241	0.310	0.043	0.092	0.067	0.094	3.370	0.059	0.087	0.058	0.139	0.053	0.393	0.022	0.051	0.018
5672	chr3	173514553	173521022	+	0	NA	intron (NM_014932, intron 3 of 6)	intron (NM_014932, intron 3 of 6)	120799	NR_046664	100874010	Hs.624265	NR_046664	ENSG00000228213	NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA	1.151	1.325	0.840	0.136	1.257	0.529	0.151	0.133	0.025	0.268	0.468	0.112	0.149	0.084	0.096	2.216	1.280	9.078	1.634	0.328	0.278	0.798	0.356	8.433	9.092	3.880	3.746	0.357	0.324	0.773	0.281	0.459	0.713	1.865	2.351	0.536	0.770	0.416	0.340	0.051	0.069	0.278	0.073	0.151	0.112		0.046	0.106	0.079
716	chr1	183964108	183979315	+	0	NA	intron (NM_001303421, intron 1 of 11)	intron (NM_001303421, intron 1 of 11)	35193	NM_001303420	23127	Hs.387995	NM_015101	ENSG00000198756	COLGALT2	C1orf17|GLT25D2	collagen beta(1-O)galactosyltransferase 2	protein-coding	nan	nan	2.287	0.115	0.234	0.105	0.228	0.302	0.083	0.119	0.186	0.032	0.312	0.186	0.121	0.629	0.523	0.528	0.778	0.353	nan	0.173	0.063	nan	0.343	4.602	5.158	0.409	0.373	0.407	0.221	0.384	0.552	0.214	0.251	0.584	nan	0.511	0.530	0.042	0.177	0.056	0.063	0.228	0.032	0.051	0.060	0.065	0.311
1972	chr12	57470968	57488931	+	0	NA	Intergenic	Intergenic	-2728	NM_005967	4665	Hs.159223	NM_005967	ENSG00000166886	NAB2	MADER	NGFI-A binding protein 2	protein-coding	nan	1.815	1.297	0.979	1.641	1.026	2.076	2.131	0.358	0.542	0.406	1.048	3.292	4.223	0.154	nan	2.346	2.929	4.171	2.830	nan	1.845	0.897	1.850	2.043	1.170	nan	1.714	nan	2.609	2.910	0.889	1.593	1.034	1.402	2.416	3.121	1.102	0.705	0.876	1.194	0.242	0.787	2.076	1.048	0.753	0.888	1.054	1.026
5294	chr22	45105685	45112697	+	0	NA	intron (NM_001017528, intron 2 of 8)	intron (NM_001017528, intron 2 of 8)	11113	NM_181333	55615	Hs.102336	NM_015366	ENSG00000186654	PRR5	FLJ20185k|PP610|PROTOR-1|PROTOR1	proline rich 5	protein-coding	1.055	nan	1.187	0.371	0.329	0.237	0.215	0.075	0.115	0.312	0.153	0.443	0.847	0.263	0.067	0.507	0.541	0.352	0.456	0.622	0.569	2.731	0.936	3.196	3.109	0.070	nan	3.027	2.992	nan	0.515	0.365	0.496	0.389	0.334	0.262	0.463	1.336	1.088	0.362	0.594	0.041	0.068	0.215	0.443	0.138	4.636	0.043	0.069
21	chr1	1587924	1595787	+	0	NA	intron (NM_033490, intron 5 of 18)	AluY|SINE|Alu	23696	NR_002946	8511	Hs.671760	NR_002946	ENSG00000215914	MMP23A	MIFR|MIFR-1|MMP21	matrix metallopeptidase 23A (pseudogene)	pseudo	3.157	nan	3.184	2.441	2.903	1.368	1.094	3.039	0.718	1.412	0.958	0.935	4.003	2.146	0.198	2.639	2.437	3.545	5.215	4.378	3.937	3.001	1.701	8.954	8.957	2.331	nan	11.186	12.867	nan	2.732	1.860	2.629	1.484	1.951	3.031	3.688	1.847	1.008	1.584	2.151	0.231	0.584	1.094	0.935	0.823	0.956	1.207	1.050
4169	chr2	897886	906074	+	0	NA	promoter-TSS (NR_110179)	promoter-TSS (NR_110179)	-843	NR_110179	101060385	Hs.385965	NR_110179	ENSG00000228799	LINC01939	-	long intergenic non-protein coding RNA 1939	ncRNA	0.412	0.399	0.513	0.029	0.281	0.136	0.532	0.083	0.059	0.995	0.647	0.702	0.873	0.043	0.105	0.408	0.256	0.188	0.242	4.785	4.582	0.173	0.067	0.317	0.416	0.222	0.476	1.813	1.620	0.441	0.179	0.353	0.492	0.302	0.233	0.068	0.197	3.256	1.504	0.183	6.013	0.035	0.039	0.532	0.702	0.335	0.124	0.159	0.030
5607	chr3	151602958	151615169	+	0	NA	intron (NR_110203, intron 1 of 2)	intron (NR_110203, intron 1 of 2)	17632	NM_033050	56670	Hs.133181	NM_033050	ENSG00000198829	SUCNR1	GPR91	succinate receptor 1	protein-coding	nan	1.159	0.635	0.157	0.363	0.184	0.220	0.497	0.126	0.336	0.527	0.216	0.204	0.018	0.088	0.447	0.277	1.085	0.801	0.411	0.549	9.758	3.436	0.275	0.247	0.122	nan	0.365	0.364	0.611	0.349	0.293	0.412	0.531	0.750	0.274	0.456	1.937	0.868	0.018	0.109	0.188	0.078	0.220	0.216	0.032	0.141	0.081	0.070
523	chr1	150119099	150126617	+	0	NA	promoter-TSS (NM_001304723)	promoter-TSS (NM_001304723)	82	NM_001304723	51177	Hs.438824	NM_016274	ENSG00000023902	PLEKHO1	CKIP-1|CKIP1|JBP|OC120	pleckstrin homology domain containing O1	protein-coding	nan	nan	2.199	2.133	3.627	2.273	4.508	1.939	0.321	2.242	1.271	5.480	9.343	2.221	0.139	3.854	4.322	4.577	6.442	11.052	nan	3.904	1.413	4.358	3.909	4.017	5.210	3.503	6.525	3.070	3.134	4.136	10.077	2.735	1.860	4.372	3.289	2.340	1.272	1.864	5.345	0.682	1.972	4.508	5.480	1.368	3.804	2.725	2.011
4862	chr20	15791968	15838606	+	0	NA	intron (NM_080676, intron 8 of 16)	L2c|LINE|L2	88672	NR_130925	613266	Hs.309149	NR_130924		LOC613266	-	uncharacterized LOC613266	ncRNA	1.050	nan	1.011	0.108	0.211	0.093	0.151	0.227	0.089	0.047	0.092	0.087	0.361	0.035	0.085	0.724	0.523	0.170	0.322	0.321	0.408	0.155	0.080	0.329	0.287	0.792	0.939	0.374	0.420	2.036	1.678	0.173	0.333	0.215	0.252	1.223	3.947	0.488	0.492	0.012	0.086	0.045	0.133	0.151	0.087	0.084	0.046	0.081	2.511
6344	chr5	82103369	82110745	+	0	NA	Intergenic	L2a|LINE|L2	-28917	NR_039773	100616297		NR_039773	ENSG00000283359	MIR3977	-	microRNA 3977	ncRNA	0.680	1.115	0.612	0.071	0.327	0.151	0.330	0.185	0.093	0.022	0.022	0.090	0.307	0.073	0.094	0.635	0.291	7.321	2.218	0.205	0.253	0.106	0.049	0.222	0.266	0.462	0.626	0.246	0.193	0.303	0.170	0.085	0.205	0.363	0.301	0.164	nan	0.269	0.306	0.015	0.132	0.052	0.010	0.330	0.090		0.056	0.015	0.067
453	chr1	113159612	113165678	+	0	NA	promoter-TSS (NM_001308264)	promoter-TSS (NM_001308264)	570	NM_006135	829	Hs.744974	NM_006135	ENSG00000116489	CAPZA1	CAPPA1|CAPZ|CAZ1	capping actin protein of muscle Z-line alpha subunit 1	protein-coding	nan	3.747	3.890	4.398	3.921	1.715	4.407	4.299	0.360	1.830	0.875	4.164	8.473	4.872	0.234	5.547	4.620	6.706	9.725	7.988	nan	8.243	4.710	15.924	17.109	6.380	7.658	7.325	9.560	6.722	6.085	5.939	9.213	3.650	4.319	6.187	6.888	3.774	1.937	3.758	3.462	0.586	3.024	4.407	4.164	1.794	2.617	2.577	2.694
1460	chr11	64066466	64074481	+	0	NA	intron (NR_133662, intron 8 of 10)	AluSg|SINE|Alu	-2527	NM_001282451	2101	Hs.110849	NM_004451	ENSG00000173153	ESRRA	ERR1|ERRa|ERRalpha|ESRL1|NR3B1	estrogen related receptor alpha	protein-coding	nan	2.456	1.545	2.326	2.141	1.015	1.647	1.492	0.199	0.925	0.563	1.177	8.807	2.116	0.123	3.617	4.685	3.142	3.999	2.528	2.080	3.758	1.447	6.277	6.583	2.285	3.162	2.923	4.873	2.987	3.646	3.406	3.358	3.766	3.021	1.814	2.019	1.802	0.909	1.439	3.409	0.710	0.932	1.647	1.177	0.773	2.644	1.462	0.837
1202	chr10	104208225	104224255	+	0	NA	TTS (NR_038938)	TTS (NR_038938)	-4930	NM_024789	79847	Hs.309069	NM_024789	ENSG00000138111	MFSD13A	C10orf77|TMEM180|bA18I14.8	major facilitator superfamily domain containing 13A	protein-coding	nan	nan	2.775	1.629	2.085	1.152	1.148	0.276	0.100	1.093	0.573	3.335	3.262	0.729	0.075	2.931	2.933	1.496	2.269	3.028	2.884	4.076	1.618	1.262	1.101	1.164	nan	3.924	5.136	2.034	2.466	1.727	2.435	1.583	1.153	3.653	9.190	1.569	0.850	2.193	2.508	0.255	0.944	1.148	3.335	0.815	1.236	1.018	3.074
595	chr1	156659206	156680428	+	0	NA	3' UTR (NM_001199723, exon 5 of 5)	3' UTR (NM_001199723, exon 5 of 5)	5642	NM_001878	1382	Hs.405662	NM_001878	ENSG00000143320	CRABP2	CRABP-II|RBP6	cellular retinoic acid binding protein 2	protein-coding	nan	nan	1.275	0.280	1.386	0.631	2.256	1.737	0.288	0.283	0.194	0.304	3.745	0.281	0.127	0.901	1.432	0.536	0.950	1.440	nan	0.846	0.324	0.320	0.402	0.508	1.057	2.435	3.049	1.201	1.432	1.661	2.085	0.316	0.470	1.647	4.740	0.852	0.513	3.284	5.189	0.085	0.360	2.256	0.304	0.683	0.160	0.947	1.030
2838	chr15	33103073	33163929	+	0	NA	intron (NM_001103184, intron 13 of 16)	intron (NM_001103184, intron 13 of 16)	-122435	NR_109767	100131315	Hs.610545	NR_109767	ENSG00000259721	LOC100131315	-	uncharacterized LOC100131315	ncRNA	0.822	nan	nan	0.091	1.430	0.774	0.484	0.980	0.150	0.243	0.206	0.071	0.243	0.014	0.077	0.316	0.229	2.701	5.109	0.222	0.275	0.084	0.046	0.136	0.150	0.142	0.237	0.250	0.263	0.652	0.337	1.060	1.062	1.447	2.010	0.174	0.286	1.126	0.716	0.209	0.165	0.515	0.030	0.484	0.071	0.046	0.200	0.790	0.070
6996	chr6	138349648	138360460	+	0	NA	Intergenic	MIR|SINE|MIR	73606	NM_022121	64065	Hs.201446	NM_022121	ENSG00000112378	PERP	KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1	PERP, TP53 apoptosis effector	protein-coding	0.896	2.213	0.835	0.655	0.452	0.275	0.763	0.075	0.015	0.116	0.077	0.235	5.015	0.020	0.099	0.338	0.208	0.453	1.337	0.459	0.559	nan	0.487	0.321	0.323	0.078	0.220	0.695	0.592	0.625	0.200	0.161	0.269	4.733	6.927	0.415	nan	0.692	0.510	0.213	0.254	0.750	0.066	0.763	0.235	0.179	0.123	0.073	0.092
2926	chr15	68559354	68574154	+	0	NA	Intergenic	Intergenic	-3387	NM_015322	10116	Hs.362733	NM_015322	ENSG00000169018	FEM1B	F1A-ALPHA|F1AA|FEM1-beta	fem-1 homolog B	protein-coding	1.981	2.040	nan	1.481	1.586	0.901	2.569	1.511	0.238	0.986	0.628	1.943	3.786	1.142	0.083	3.712	3.699	6.195	5.869	3.274	2.818	nan	1.365	3.181	3.200	1.448	1.921	3.234	4.292	4.921	4.331	3.317	4.933	1.495	1.733	1.995	2.363	1.244	0.695	0.824	2.116	0.249	1.176	2.569	1.943	0.630	1.991	1.674	0.644
835	chr1	208400818	208418932	+	0	NA	intron (NM_025179, intron 1 of 31)	intron (NM_025179, intron 1 of 31)	7790	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding	1.437	3.282	0.998	3.498	4.858	2.361	1.477	1.263	0.274	0.766	0.482	4.022	6.168	0.083	0.080	1.597	2.476	0.837	1.346	3.991	3.378	3.631	0.968	nan	nan	0.865	1.581	3.328	3.813	0.547	0.392	0.721	1.044	1.006	0.859	0.407	0.949	1.746	0.993	3.941	1.463	0.259	1.143	1.477	4.022	0.131	0.635	0.770	0.122
1267	chr11	690813	701229	+	0	NA	promoter-TSS (NM_021008)	promoter-TSS (NM_021008)	-267	NM_001293634	10522	Hs.243994	NM_021008	ENSG00000177030	DEAF1	MRD24|NUDR|SPN|ZMYND5	DEAF1, transcription factor	protein-coding	2.397	2.617	4.353	2.067	3.052	1.740	2.654	1.400	0.187	1.447	0.829	7.722	4.295	1.662	0.070	4.269	4.715	3.693	5.387	8.285	8.018	3.817	4.058	8.378	8.605	2.521	3.244	7.410	10.859	3.376	3.634	4.164	5.957	2.757	2.844	3.902	2.267	1.966	1.034	4.515	5.454	0.723	1.347	2.654	7.722	0.469	1.666	1.161	0.867
113	chr1	18154590	18196314	+	0	NA	Intergenic	AluY|SINE|Alu	93644	NM_030812	81569	Hs.2149	NM_030812	ENSG00000117148	ACTL8	CT57	actin like 8	protein-coding	0.895	0.667	nan	0.063	0.431	0.169	0.244	0.071	0.081	0.113	0.104	0.034	2.937	0.055	0.087	0.407	0.608	0.110	0.179	0.711	0.649	0.125	0.048	0.235	nan	1.037	nan	0.282	0.554	nan	1.147	0.212	0.209	0.081	0.086	0.374	0.879	1.458	0.795	1.515	0.179	0.034	0.023	0.244	0.034	0.342	0.037	0.037	0.313
4015	chr19	31138839	31162605	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	287422	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding	1.241	0.907	2.082	0.166	2.843	1.462	0.372	0.152	0.150	0.066	0.102	0.375	0.386	0.064	0.111	0.411	0.402	0.368	0.554	0.251	0.234	0.221	0.084	0.132	0.110	0.433	0.841	0.164	0.123	nan	0.105	0.794	0.740	0.037	0.082	0.514	1.808	0.582	0.461	3.194	0.146	0.020	0.066	0.372	0.375	0.313	0.047	0.126	0.270
5487	chr3	115942857	116029692	+	0	NA	intron (NM_002338, intron 1 of 6)	intron (NM_002338, intron 1 of 6)	-92597	NR_109998	101926903	Hs.26479	NR_109998	ENSG00000240922	LSAMP-AS1	-	LSAMP antisense RNA 1	ncRNA	1.299	nan	0.817	0.141	0.681	0.292	0.161	0.126	0.124	0.226	0.194	0.098	0.181	0.185	0.076	0.330	0.295	0.266	0.285	0.295	nan	0.450	0.191	0.251	0.269	nan	5.559	0.187	0.222	1.572	1.095	0.120	0.191	0.681	0.818	0.213	0.346	0.652	0.564	0.067	0.086	0.198	0.098	0.161	0.098	0.198	0.044	0.055	0.066
7021	chr6	145046853	145099522	+	0	NA	intron (NM_007124, intron 55 of 73)	intron (NM_007124, intron 55 of 73)	346396	NR_132778	106635530		NR_132778		SNORA98	-	small nucleolar RNA, H/ACA box 98	snoRNA	nan	0.999	nan	0.288	8.799	4.756	0.416	0.189	0.055	0.801	0.643	1.765	0.391	0.040	0.135	0.350	0.297	2.386	2.014	1.160	1.560	3.713	1.133	0.255	0.294	0.097	0.160	0.111	0.118	0.878	0.480	0.158	0.251	2.348	4.083	0.270	0.480	2.988	1.347	0.025	0.148	0.900	0.077	0.416	1.765	0.105	0.214	0.049	0.119
6388	chr5	101987218	102007636	+	0	NA	intron (NR_103753, intron 1 of 2)	Arthur1|DNA|hAT-Tip100	9741	NR_103756	285708	Hs.533011	NR_103753		LINC00491	-	long intergenic non-protein coding RNA 491	ncRNA	1.145	2.511	1.715	2.462	0.719	0.385	0.238	0.663	0.072	0.139	0.093	1.015	5.743	0.048	0.115	0.552	0.362	0.393	0.526	0.845	1.199	0.956	0.364	1.356	1.367	5.162	5.202	3.471	6.583	0.523	0.270	0.178	0.372	1.215	0.974	0.810	1.642	0.850	0.588	1.190	2.507	0.336	0.237	0.238	1.015	0.167	0.357	0.066	0.519
6049	chr4	154063210	154090823	+	0	NA	intron (NM_001130067, intron 1 of 11)	intron (NM_001130067, intron 1 of 11)	2746	NM_001130067	23321	Hs.435711	NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding	nan	1.475	1.509	0.759	0.842	0.382	0.710	0.970	0.158	0.239	0.182	1.593	2.082	0.917	0.087	0.648	0.668	2.666	6.139	1.907	1.377	0.841	0.242	0.408	0.397	0.356	0.621	0.854	1.114	1.134	1.025	0.894	1.247	1.091	0.999	0.354	0.687	0.587	0.423	0.994	1.066	0.266	0.323	0.710	1.593	0.191	0.301	0.608	0.085
4365	chr2	55361075	55369746	+	0	NA	promoter-TSS (NM_001321904)	promoter-TSS (NM_001321904)	-443	NM_001321904	57142	Hs.637850	NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding	1.216	nan	1.211	0.302	7.696	4.045	0.675	0.765	0.149	0.380	0.217	0.415	1.000	0.125	0.108	4.861	5.170	2.062	2.197	0.433	0.493	2.076	0.617	0.456	0.543	0.346	0.600	0.747	0.651	0.671	0.282	4.385	7.218	0.235	0.401	0.510	1.023	0.589	0.496	0.182	0.492	0.022	0.183	0.675	0.415	0.089	0.175	6.623	0.229
6970	chr6	133132774	133138527	+	0	NA	promoter-TSS (NM_001016)	promoter-TSS (NM_001016)	-58	NM_001016	6206	Hs.546289	NM_001016	ENSG00000112306	RPS12	S12	ribosomal protein S12	protein-coding	2.928	2.198	4.154	3.932	4.102	1.860	4.871	1.270	0.388	2.267	1.162	3.058	5.012	7.871	0.294	3.924	5.108	6.483	7.489	4.950	4.394	15.328	5.377	8.624	9.237	1.964	2.985	5.085	6.261	10.637	11.668	3.283	5.171	4.748	4.456	5.965	nan	2.689	1.451	2.055	4.112	0.527	0.608	4.871	3.058	1.068	2.677	1.703	1.546
7624	chr8	27587562	27609890	+	0	NA	intron (NM_001304529, intron 5 of 6)	intron (NM_001304529, intron 5 of 6)	31444	NR_130762	55246	Hs.445512	NM_018246	ENSG00000147419	CCDC25	-	coiled-coil domain containing 25	protein-coding	nan	0.842	nan	0.090	0.216	0.098	0.164	0.151	0.087	0.086	0.117	0.076	0.099	0.083	0.165	0.427	0.421	0.259	0.370	nan	0.685	nan	0.153	0.196	0.217	0.296	0.417	0.279	0.312	0.403	0.234	0.167	0.243	0.117	0.147	1.150	4.636	nan	nan	0.055	0.092	0.021	0.047	0.164	0.076	0.004	0.050	0.044	1.611
507	chr1	147804813	147808011	+	0	NA	TTS (NR_049810)	TTS (NR_049810)	266	NR_049810	100847044		NR_049810	ENSG00000283676	MIR5087	-	microRNA 5087	ncRNA	1.267	nan	2.894	5.697	0.348	0.250	0.553	0.230		3.789	2.110	2.240	13.694	4.118	0.219	9.394	12.275	3.988	5.414	5.605	6.274	0.978	0.945	5.652	6.333	1.394	1.878	8.100	8.694	1.135	0.877	14.897	17.523	0.998	2.162	8.289	7.340	1.245	0.892	0.556	9.309		0.148	0.553	2.240	0.030	3.787	4.664	1.508
6908	chr6	111967747	112017945	+	0	NA	intron (NM_002037, intron 13 of 13)	intron (NM_002037, intron 13 of 13)	48419	NM_153047	2534	Hs.390567	NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding	nan	0.960	nan	0.552	0.438	0.224	0.437	0.354	0.109	0.174	0.123	1.135	2.289	0.063	0.124	0.443	0.379	0.363	0.496	1.565	nan	nan	0.272	0.349	0.374	0.428	nan	0.388	0.440	1.007	0.777	0.240	0.402	0.141	0.253	1.205	nan	0.472	0.331	1.039	1.844	0.047	0.217	0.437	1.135	0.258	0.042	0.137	0.903
6110	chr4	187642777	187649500	+	0	NA	Intergenic	CpG-20331	-1151	NM_005245	2195	Hs.481371	NM_005245	ENSG00000083857	FAT1	CDHF7|CDHR8|FAT|ME5|hFat1	FAT atypical cadherin 1	protein-coding	nan	0.794	nan	1.061	0.297	0.164	1.434	0.077	0.025	0.422	0.531	4.961	8.103	2.190	0.069	2.064	2.547	9.103	12.755	1.709	1.190	0.170	0.113	3.755	3.840	0.108	0.166	1.434	2.545	0.981	1.424	1.088	2.950	2.260	1.898	0.047	0.034	0.163	0.209	0.058		0.650	0.544	1.434	4.961		4.253	0.478	
3843	chr18	55919885	55960433	+	0	NA	intron (NM_001144964, intron 5 of 30)	intron (NM_001144964, intron 5 of 30)	51405	NM_001144966	23327	Hs.185677	NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding	nan	0.900	0.930	0.146	0.261	0.158	0.360	0.300	0.051	0.070	0.077	0.238	0.558	0.045	0.072	0.495	0.502	1.376	5.361	0.614	0.658	0.760	0.383	0.687	0.692	0.353	0.564	0.956	1.170	0.521	0.369	0.379	0.529	0.213	0.356	0.357	0.754	nan	1.136	0.255	0.290	0.063	0.135	0.360	0.238	0.133	0.035	0.140	0.208
3565	chr17	74960916	74970007	+	0	NA	promoter-TSS (NR_136417)	promoter-TSS (NR_136417)	-180	NR_136416	105371899	Hs.634683	NR_136416	ENSG00000267568	LOC105371899	-	uncharacterized LOC105371899	ncRNA	2.342	3.187	0.885	1.460	7.507	3.456	2.183	0.108	0.083	2.376	1.182	1.421	5.516	0.164	0.095	8.316	10.390	5.027	2.942	4.118	3.365	6.032	3.318	2.071	2.144	nan	0.532	2.335	4.949	3.367	3.323	4.777	6.783	2.416	2.584	1.581	3.171	nan	1.616	1.573	0.615	0.627	0.981	2.183	1.421	0.481	1.020	5.888	0.677
1258	chr10	131748576	131763732	+	0	NA	intron (NM_001005463, intron 5 of 15)	intron (NM_001005463, intron 5 of 15)	5937	NM_001005463	253738	Hs.591374	NM_001005463	ENSG00000108001	EBF3	COE3|EBF-3|O/E-2|OE-2	early B-cell factor 3	protein-coding	2.425	0.510	2.009	0.041	7.822	3.771	1.800	0.069	0.011	0.103	0.049	2.185	3.429	0.062	0.063	1.104	0.962	0.103	0.080	0.593	0.521	0.089	0.040	0.496	0.428	1.294	2.067	0.108	0.148	0.384	0.408	0.163	0.228	1.001	0.713	0.610	0.454	1.014	0.554	0.632	0.053	0.169	2.756	1.800	2.185	0.903	0.007	0.014	0.123
4030	chr19	35737790	35741637	+	0	NA	5' UTR (NM_001260490, exon 1 of 7)	5' UTR (NM_001260490, exon 1 of 7)	154	NM_205834	51599	Hs.466507	NM_015925	ENSG00000105699	LSR	ILDR3|LISCH7	lipolysis stimulated lipoprotein receptor	protein-coding	1.667	4.635	5.980	13.372	6.599	4.095	0.761	0.040	0.041	2.072	1.146	5.945	27.074	7.023	0.201	5.295	8.264	7.377	11.740	11.336	12.189	9.843	6.696	17.446	19.048	0.106	0.197	12.136	13.453	nan	0.089	10.456	15.683	6.277	5.699	0.099	0.154	4.697	2.800	5.738	6.374	1.972	1.524	0.761	5.945	0.874	0.053	3.593	0.033
7009	chr6	139681715	139698589	+	0	NA	Intergenic	Intergenic	5198	NM_001168389	10370	Hs.82071	NM_006079	ENSG00000164442	CITED2	ASD8|MRG-1|MRG1|P35SRJ|VSD2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein-coding	2.736	2.113	4.117	1.937	2.035	1.342	2.115	1.506	0.124	0.895	0.557	1.544	6.133	2.304	0.154	2.792	3.618	3.665	5.540	3.543	2.721	nan	2.700	3.731	3.954	1.613	2.096	1.984	3.471	3.470	4.689	1.959	3.807	2.913	2.317	1.507	nan	1.082	0.657	2.182	1.937	0.666	1.749	2.115	1.544	0.580	1.328	1.974	0.688
2313	chr13	53022846	53036188	+	0	NA	promoter-TSS (NM_001286687)	promoter-TSS (NM_001286687)	22	NM_001286687	26586	Hs.444028	NM_018204	ENSG00000136108	CKAP2	LB1|TMAP|se20-10	cytoskeleton associated protein 2	protein-coding	2.610	nan	nan	2.046	1.372	0.755	0.890	1.155	0.157	1.316	0.779	2.919	4.946	1.678	0.121	3.689	4.035	1.361	2.209	5.832	5.358	nan	2.154	2.461	2.574	1.767	1.981	2.696	4.323	4.257	4.428	1.946	3.871	2.265	2.294	4.750	nan	0.808	0.338	2.158	3.488	0.544	1.761	0.890	2.919	0.790	0.975	2.031	2.259
3653	chr18	7939727	7948586	+	0	NA	intron (NM_001105244, intron 5 of 32)	intron (NM_001105244, intron 5 of 32)	376842	NM_001105244	5797	Hs.49774	NM_002845	ENSG00000173482	PTPRM	PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu	protein tyrosine phosphatase, receptor type M	protein-coding	0.680	0.673	0.874	0.080	0.928	0.469	0.288	0.037	0.109	0.964	0.460	0.936	nan	0.061	0.111	0.477	0.709	0.864	0.944	0.753	0.872	9.005	2.459	0.331	0.323	0.100	nan	3.341	2.188	nan	0.323	0.206	0.246	1.754	1.246	0.416	nan	nan	1.955	0.045	0.211	0.129	0.093	0.288	0.936	0.383	1.026	0.045	0.306
5463	chr3	112050916	112054121	+	0	NA	intron (NM_001318830, intron 1 of 4)	intron (NM_001318830, intron 1 of 4)	724	NM_001318830	4345	Hs.79015	NM_005944	ENSG00000091972	CD200	MOX1|MOX2|MRC|OX-2	CD200 molecule	protein-coding	2.766	nan	0.772	0.764	6.286	2.198	2.931	0.675	0.052	1.758	1.147	16.091	5.843		0.071	0.428	0.519	0.400	0.508	16.646	nan	9.787	3.229	0.381	0.470	nan	0.276	3.750	5.461	4.234	3.476	0.644	2.464	0.397	0.159	0.520	0.659	5.175	2.909	1.157	0.194	0.150	5.175	2.931	16.091	3.365	0.918	0.431	0.151
6998	chr6	138422493	138437889	+	0	NA	Intergenic	Intergenic	-1531	NM_022121	64065	Hs.201446	NM_022121	ENSG00000112378	PERP	KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1	PERP, TP53 apoptosis effector	protein-coding	1.719	3.339	2.242	2.769	2.832	1.426	2.614	0.097	0.073	1.112	0.598	1.942	13.432	1.697	0.129	0.433	0.356	3.917	5.564	3.639	3.079	nan	2.879	2.980	2.991	0.177	0.299	2.722	3.856	1.305	1.444	1.554	3.218	7.492	7.886	0.541	nan	2.786	1.578	3.742	2.566	1.663	0.407	2.614	1.942	0.801	1.364	1.286	0.184
3354	chr17	30582305	30611840	+	0	NA	intron (NM_138328, intron 2 of 8)	FLAM_C|SINE|Alu	3877	NM_138328	162494	Hs.655027	NM_138328	ENSG00000141314	RHBDL3	RHBDL4|VRHO	rhomboid like 3	protein-coding	nan	1.406	1.137	0.319	1.534	0.703	0.616	0.119	0.097	0.433	0.201	1.613	0.818	0.430	0.171	0.744	1.205	0.344	0.528	nan	2.428	1.280	0.527	0.693	0.681	1.020	1.736	0.429	0.697	nan	4.265	0.506	0.678	1.183	1.166	2.055	5.108	1.312	0.855	0.222	0.109	0.245	0.342	0.616	1.613	0.488	0.213	0.184	2.415
6895	chr6	107973299	107997222	+	0	NA	Intergenic	Intergenic	68340	NM_001286409	256380	Hs.486109	NM_198081	ENSG00000146285	SCML4	dJ47M23.1	sex comb on midleg-like 4 (Drosophila)	protein-coding	3.203	nan	nan	1.256	0.953	0.418	2.072	1.134	0.124	0.262	0.163	0.908	0.749	0.105	0.127	0.785	0.999	0.646	1.017	1.277	nan	4.485	1.485	0.897	1.028	1.226	1.504	0.881	0.983	nan	0.769	0.656	1.066	1.295	1.289	0.378	0.734	1.210	0.730	0.343	2.729	0.228	0.099	2.072	0.908	0.335	1.991	0.702	0.229
2014	chr12	69200482	69204083	+	0	NA	promoter-TSS (NM_001278462)	promoter-TSS (NM_001278462)	330	NM_002392	4193	Hs.484551	NM_002392	ENSG00000135679	MDM2	ACTFS|HDMX|hdm2	MDM2 proto-oncogene	protein-coding	6.088	6.671	4.243	6.888	8.511	4.978	9.365	4.156	0.722	4.165	2.456	8.016	18.604	4.012	0.174	5.189	5.648	10.637	16.226	16.667	nan	11.023	5.310	15.142	15.374	4.826	6.443	14.020	21.668	8.199	10.073	3.019	5.326	6.313	7.040	5.846	5.444	5.255	2.935	4.951	8.877	1.265	2.370	9.365	8.016	2.480	4.560	3.876	1.678
6641	chr6	19431812	19443810	+	0	NA	Intergenic	MER47B|DNA|TcMar-Tigger	-12241	NR_134615	105374960	Hs.519913	NR_134615		LOC105374960	-	uncharacterized LOC105374960	ncRNA	1.114	nan	1.117	0.596	1.174	0.737	0.374	0.290	0.095	0.261	0.198	0.933	3.492	0.099	0.102	0.364	0.197	0.166	0.334	0.566	0.558	2.872	0.837	0.240	0.210	1.148	1.494	0.406	0.409	0.430	0.188	0.176	0.202	1.281	1.020	0.277	0.510	0.780	0.651	5.514	0.956	0.143	0.106	0.374	0.933	0.195	0.203	0.057	0.100
7784	chr8	91795170	91806688	+	0	NA	Intergenic	Intergenic	-2992	NM_022351	64168	Hs.719466	NM_022351	ENSG00000123119	NECAB1	EFCBP1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	nan	1.342	1.291	0.528	5.548	3.051	0.204	0.227	0.098	0.040	0.051	0.104	1.043	0.047	0.065	0.170	0.107	0.255	nan	0.791	0.752	0.165	0.074	0.221	0.294	0.130	0.237	1.603	1.839	0.599	0.346	0.090	0.199	1.232	0.913	0.380	0.715	0.961	0.740	0.049	0.078	0.322	0.082	0.204	0.104	0.058	0.071	0.034	0.076
5140	chr21	43474081	43501377	+	0	NA	intron (NM_001199528, intron 1 of 22)	intron (NM_001199528, intron 1 of 22)	-3697	NM_001004416	89766	Hs.242520	NM_173568	ENSG00000177398	UMODL1	-	uromodulin like 1	protein-coding	nan	1.659	1.644	0.653	1.004	0.468	0.417	0.170	0.047	0.127	0.105	1.480	6.460	0.052	0.066	2.311	2.991	1.370	2.394	2.050	1.595	nan	0.280	1.166	1.335	0.461	nan	2.840	4.162	1.027	1.156	2.171	3.207	0.923	0.906	0.405	0.593	1.004	0.740	4.790	1.680	0.175	0.079	0.417	1.480	0.916	0.067	2.226	0.131
7294	chr7	56115943	56122028	+	0	NA	promoter-TSS (NM_001009186)	promoter-TSS (NM_001009186)	283	NM_004577	5723	Hs.512656	NM_004577	ENSG00000146733	PSPH	PSP|PSPHD	phosphoserine phosphatase	protein-coding	7.769	3.738	5.002	3.946	4.698	1.998	4.215	2.670	0.636	2.881	1.729	4.652	8.951	5.118	0.210	7.462	5.989	5.583	8.120	7.688	7.650	6.818	2.510	9.323	9.567	5.410	6.544	11.532	16.410	6.429	7.352	3.600	7.104	6.351	6.731	7.118	7.512	4.284	2.157	2.873	1.743	1.072	1.806	4.215	4.652	1.247	4.126	2.175	2.326
2110	chr12	103886763	103899921	+	0	NA	Intergenic	Intergenic	3524	NR_135004	105369945	Hs.742785	NR_135004		LOC105369945	-	uncharacterized LOC105369945	ncRNA	1.081	1.298	nan	1.883	1.951	1.333	1.359	0.080	0.043	1.448	0.511	4.157	3.866	0.049	0.112	0.278	0.135	0.195	0.318	3.363	3.176	3.060	1.045	0.144	0.197	0.581	0.731	2.600	2.856	0.603	0.631	0.111	0.183	1.021	0.659	0.303	0.323	2.302	1.214	1.648	1.662	0.211	0.344	1.359	4.157	0.201	1.296	0.007	0.033
5182	chr22	19205414	19223449	+	0	NA	intron (NM_007098, intron 11 of 32)	AluSz6|SINE|Alu	-48055	NR_046298	6576	Hs.111024	NM_005984	ENSG00000100075	SLC25A1	CTP|D2L2AD|SEA|SLC20A3	solute carrier family 25 member 1	protein-coding	0.841	nan	0.822	0.339	0.577	0.222	0.476	0.101	0.070	0.463	0.346	0.496	0.591	0.048	0.083	0.333	0.412	0.474	0.558	0.511	0.562	0.711	0.310	0.404	0.414	0.359	0.759	0.982	0.930	0.433	0.252	0.180	0.309	1.301	1.615	0.211	0.526	3.496	1.664	0.160	0.295	0.614	0.157	0.476	0.496	0.093	0.369	0.033	0.089
1342	chr11	20775883	20796238	+	0	NA	intron (NM_201551, intron 2 of 18)	intron (NM_201551, intron 2 of 18)	94963	NM_001288714	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding	0.781	1.044	0.897	3.067	0.652	0.271	1.161	0.043	0.087	0.719	0.261	3.278	1.699	0.031	0.063	2.806	2.570	0.662	1.072	2.305	2.639	4.030	1.782	0.191	0.165	0.391	0.664	1.212	1.513	0.420	0.171	0.959	1.931	4.084	4.962	0.259	0.599	2.386	1.334	0.041	0.805	1.452	2.757	1.161	3.278	0.005	0.045	1.769	0.183
1968	chr12	56543847	56556468	+	0	NA	intron (NM_002475, intron 5 of 7)	AluSx1|SINE|Alu	-1888	NM_021019	4637	Hs.632717	NM_021019	ENSG00000092841	MYL6	ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM	myosin light chain 6	protein-coding	nan	2.842	1.994	2.840	4.006	2.226	3.659	1.495	0.243	2.368	1.271	3.963	7.942	2.291	0.112	nan	4.372	3.598	4.741	7.139	nan	7.842	2.975	6.426	6.870	3.128	nan	5.484	nan	4.492	4.400	1.741	2.688	5.302	5.836	2.369	3.721	3.893	1.767	2.228	3.672	1.447	1.354	3.659	3.963	1.577	2.068	1.255	1.586
2457	chr13	112560044	112635967	+	0	NA	Intergenic	Intergenic	-28619	NR_120392	100505996	Hs.654853	NR_120392	ENSG00000224243	LINC00403	-	long intergenic non-protein coding RNA 403	ncRNA	0.588	nan	0.786	0.762	1.033	0.510	1.324	0.066	0.068	0.273	0.164	3.266	1.902	0.033	0.067	0.452	0.236	0.119	0.232	6.825	6.286	0.715	0.292	0.049	0.055	0.042	0.069	2.732	2.718	0.292	0.160	0.369	0.443	0.260	0.249	0.115	0.169	0.499	0.305	1.231	1.143	0.037	0.190	1.324	3.266	0.013	0.034	0.139	0.036
4359	chr2	53930536	53959895	+	0	NA	intron (NM_001164165, intron 5 of 9)	L1PA16|LINE|L1	-49705	NM_001346127	494143	Hs.585944	NM_001008708	ENSG00000143942	CHAC2	-	ChaC cation transport regulator homolog 2	protein-coding	6.156	3.604	5.799	0.152	0.254	0.120	0.227	0.150	0.144	0.144	0.186	0.129	0.307	0.089	0.131	0.417	0.236	0.285	0.398	0.424	0.505	0.292	0.140	0.405	0.496	0.642	0.784	0.431	0.351	0.442	0.241	0.196	0.329	10.980	10.400	0.351	0.840	0.490	0.337	0.034	0.099	1.821	0.084	0.227	0.129	0.030	0.246	0.074	0.139
7651	chr8	38236534	38245322	+	0	NA	Intergenic	Intergenic	-1138	NM_017778	54904	Hs.434966	NM_017778	ENSG00000147548	NSD3	KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328	nuclear receptor binding SET domain protein 3	protein-coding	5.802	6.440	nan	19.991	6.270	3.356	5.178	3.206	0.542	3.892	1.364	5.934	15.920	3.210	0.218	5.928	7.373	7.026	10.547	16.229	12.398	10.192	7.489	10.731	11.536	6.666	7.314	6.552	12.569	7.150	7.437	2.295	4.279	9.541	9.285	5.957	6.136	6.152	3.535	6.014	3.817	1.796	2.119	5.178	5.934	1.113	4.924	1.900	1.992
4009	chr19	29032046	29062365	+	0	NA	intron (NR_110759, intron 5 of 9)	MLT1K|LTR|ERVL-MaLR	-50390	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA	nan	0.536	0.471	0.075	0.216	0.112	0.102	0.079	0.059	0.051	0.077	0.041	4.606	0.057	0.098	0.201	0.119	0.195	0.245	0.162	0.192	0.155	0.064	0.094	0.096	0.176	0.278	0.139	0.153	0.227	0.097	0.255	0.292	0.060	0.082	0.141	0.170	1.614	0.966	0.029	0.052	0.024	0.010	0.102	0.041	0.051	0.014	0.083	0.049
4065	chr19	41046603	41055365	+	0	NA	intron (NM_020971, intron 20 of 35)	L1ME4a|LINE|L1	14589	NM_025213	57731	Hs.32706	NM_020971	ENSG00000160460	SPTBN4	QV|SPNB4|SPTBN3	spectrin beta, non-erythrocytic 4	protein-coding	1.517	0.764	2.003	0.186	0.644	0.292	0.126	0.222	0.260	0.110	0.067	0.287	0.911	0.161	0.099	0.365	0.442	0.212	0.315	0.480	0.469	0.394	0.104	0.250	0.343	1.044	1.328	0.293	0.310	7.463	5.465	0.408	0.376	0.263	0.340	1.066	3.636	2.244	0.953	1.637	0.153	0.065	0.574	0.126	0.287	1.779	0.774	0.068	0.972
5660	chr3	171588004	171597933	+	0	NA	Intergenic	Intergenic	25562	NR_046852	100874219	Hs.730556	NR_046852	ENSG00000234717	TMEM212-AS1	-	TMEM212 antisense RNA 1	ncRNA	1.261	1.252	0.956	0.222	0.403	0.114	0.351	4.531	0.340	0.109	0.165	0.168	0.176	0.312	0.107	0.432	0.192	6.001	10.998	0.412	0.481	0.262	0.179	0.258	0.315	0.432	0.653	1.685	1.838	0.579	0.291	0.189	0.369	0.077	0.134	0.250	0.415	0.500	0.583	0.280	0.098	0.010	0.024	0.351	0.168	0.020	0.041	0.056	0.186
3476	chr17	56488687	56495987	+	0	NA	intron (NM_017763, intron 2 of 9)	intron (NM_017763, intron 2 of 9)	2606	NM_017763	54894	Hs.584916	NM_017763	ENSG00000108375	RNF43	RNF124|SSPCS|URCC	ring finger protein 43	protein-coding	1.358	2.581	3.499	0.525	0.482	0.372	1.423	0.347	0.147	2.184	1.382	0.705	1.023	0.105	0.112	3.915	4.557	0.689	1.361	0.598	0.693	0.378	0.214	20.889	21.491	0.118	0.342	nan	nan	6.176	5.324	3.060	6.508	0.232	0.221	0.721	2.016	1.739	0.670	1.197	0.134		0.032	1.423	0.705	0.251	0.056	3.980	0.320
1355	chr11	27217874	27262318	+	0	NA	intron (NR_125767, intron 1 of 4)	intron (NR_125767, intron 1 of 4)	219	NR_125768	103695435	Hs.196133	NR_125766	ENSG00000254560	BBOX1-AS1	-	BBOX1 antisense RNA 1	ncRNA	1.454	1.465	1.662	0.401	0.916	0.491	0.992	1.585	0.240	0.511	0.294	0.725	6.177	0.112	0.102	0.510	0.356	0.708	1.681	0.902	1.152	1.331	0.359	0.904	0.943	0.824	1.291	1.275	1.341	1.705	1.583	0.358	0.629	2.645	2.957	0.795	2.691	1.738	0.912	1.520	0.474	0.861	0.199	0.992	0.725	0.419	0.628	0.323	1.322
3640	chr18	3243211	3270405	+	0	NA	TTS (NM_001303048)	TTS (NM_001303048)	4597	NM_001303049	10627	Hs.190086	NM_006471	ENSG00000101608	MYL12A	HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B	myosin light chain 12A	protein-coding	1.753	1.624	1.878	1.046	0.853	0.454	0.390	2.291	0.236	0.356	0.254	1.779	nan	5.697	0.213	1.607	1.757	2.952	5.707	2.025	2.169	nan	1.043	4.006	4.055	0.972	nan	1.813	2.035	nan	1.219	0.735	1.332	1.529	1.756	1.141	nan	nan	0.857	0.876	0.438	0.288	0.578	0.390	1.779	0.297	0.596	0.244	0.507
8084	chr9	21651101	21717199	+	0	NA	Intergenic	Intergenic	-118485	NM_002451	4507	Hs.193268	NM_002451	ENSG00000099810	MTAP	BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus	methylthioadenosine phosphorylase	protein-coding	0.576	nan	nan	0.088	0.185	0.117	0.202	0.750	0.095	0.119	0.108	0.069	0.273	4.267	0.132	0.207	0.089	0.232	0.346	0.335	0.384	0.186	0.097	0.072	0.068	0.584	0.969	0.128	0.145	0.462	0.223	0.159	0.218	0.085	0.115	0.145	0.251	1.011	0.946	0.020	0.091	0.022	0.024	0.202	0.069	0.010	0.092	0.038	0.075
3095	chr16	26076556	26102386	+	0	NA	intron (NM_006040, intron 1 of 1)	AluY|SINE|Alu	52913	NR_036146	100422923		NR_036146	ENSG00000265005	MIR548W	-	microRNA 548w	ncRNA	0.524	0.478	nan	0.079	0.503	0.316	0.273	0.057	0.045	0.018	0.094	0.071	0.258	0.013	0.082	0.265	0.202	0.071	0.060	0.093	0.151	nan	0.076	0.119	0.118	0.111	0.203	5.076	3.737	0.248	0.074	0.117	0.251	0.066	0.092	0.224	0.376	0.168	0.205	0.017	0.125	0.019	0.099	0.273	0.071		0.667	0.046	0.087
3617	chr17	79619754	79626824	+	0	NA	intron (NM_002602, intron 1 of 3)	intron (NM_002602, intron 1 of 3)	318	NR_026872	5148	Hs.654482	NM_002602	ENSG00000185527	PDE6G	PDEG|RP57	phosphodiesterase 6G	protein-coding	1.620	1.133	1.447	0.124	0.524	0.342	0.236	0.180	0.168	0.113	0.172	0.198	0.495	0.132	0.098	1.633	1.411	0.624	1.136	0.465	0.645	0.749	0.328	1.272	1.370	nan	0.515	0.276	0.526	1.833	1.646	0.949	0.916	0.171	0.281	2.851	7.619	nan	0.585	0.056	0.099	0.054	0.089	0.236	0.198	0.142	0.132	0.361	6.724
2043	chr12	80327209	80332584	+	0	NA	promoter-TSS (NM_001143885)	promoter-TSS (NM_001143885)	-661	NM_001244990	4659	Hs.49582	NM_002480	ENSG00000058272	PPP1R12A	M130|MBS|MYPT1	protein phosphatase 1 regulatory subunit 12A	protein-coding	4.550	3.352	2.498	3.992	4.203	2.773	3.123	5.503	0.600	2.433	1.179	3.833	10.600	3.269	0.096	4.159	5.244	10.238	8.781	10.625	9.071	8.707	3.618	11.330	12.314	4.418	5.204	7.336	10.751	5.247	6.103	3.000	5.663	5.413	5.581	4.186	5.724	3.544	1.747	3.456	4.135	1.492	2.052	3.123	3.833	1.141	2.153	1.838	1.751
7893	chr8	118177802	118191836	+	0	NA	exon (NM_001172811, exon 10 of 10)	exon (NM_001172811, exon 10 of 10)	37482	NM_001172814	169026	Hs.532270	NM_173851	ENSG00000164756	SLC30A8	ZNT8|ZnT-8	solute carrier family 30 member 8	protein-coding	nan	nan	0.871	1.317	0.198	0.128	1.310	0.125	0.091	0.491	0.255	0.119	2.870	0.016	0.080	0.242	0.112	0.147	0.402	1.322	1.564	8.315	4.142	0.665	nan	0.334	nan	0.846	1.640	0.432	0.259	0.114	0.231	3.282	3.047	0.399	0.684	1.352	0.888	3.833	0.134	1.067	0.628	1.310	0.119		0.195	0.015	0.142
329	chr1	60124543	60132068	+	0	NA	intron (NM_001278224, intron 6 of 9)	Tigger3a|DNA|TcMar-Tigger	70663	NR_039861	100616409		NR_039861	ENSG00000266150	MIR4711	-	microRNA 4711	ncRNA	0.988	0.823	nan	0.103	0.218	0.106	0.117	0.191	0.234	0.042	0.154	0.207	0.309	0.100	0.158	0.406	0.349	6.664	1.709	0.627	0.575	0.366	0.187	0.392	0.415	nan	nan	0.679	nan	0.364	0.265	0.262	0.415	0.043	0.128	0.403	1.134	0.610	0.440	0.074	0.151	0.026	0.053	0.117	0.207	0.115	0.093	0.112	0.412
525	chr1	150204862	150210240	+	0	NA	promoter-TSS (NM_001136479)	promoter-TSS (NM_001136479)	-525	NM_001136479	81611	Hs.656466	NM_030920	ENSG00000143401	ANP32E	LANP-L|LANPL	acidic nuclear phosphoprotein 32 family member E	protein-coding	6.989	nan	4.837	3.481	3.239	1.684	4.657	4.255	0.569	2.890	2.105	4.843	23.759	4.993	0.225	5.991	7.492	8.340	12.465	13.178	nan	8.862	3.006	13.397	14.310	6.802	8.238	4.988	6.508	6.827	8.520	5.507	12.337	4.939	4.910	10.295	9.006	3.385	1.646	4.375	10.458	0.866	3.757	4.657	4.843	1.451	5.321	5.459	3.307
8064	chr9	14421654	14439791	+	0	NA	Intergenic	AluSz6|SINE|Alu	-31740	NM_001190738	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding	nan	nan	1.052	0.295	0.387	0.228	1.113	0.535	0.044	0.730	0.594	0.566	2.234	0.070	0.074	0.249	0.304	2.949	6.184	0.826	0.925	1.237	0.382	0.128	0.166	31.837	36.362	0.384	0.401	0.483	0.215	0.290	0.600	0.697	0.663	0.638	2.768	2.443	1.517	1.121	0.108	0.090	0.048	1.113	0.566	0.082	0.335	0.109	0.705
787	chr1	203095708	203115262	+	0	NA	intron (NM_001048230, intron 2 of 2)	intron (NM_001048230, intron 2 of 2)	8649	NM_001048230	134	Hs.77867	NM_000674	ENSG00000163485	ADORA1	RDC7	adenosine A1 receptor	protein-coding	1.445	1.719	1.581	0.350	1.127	0.551	0.634	0.144	0.074	0.470	0.350	2.181	1.720	0.198	0.110	2.381	4.101	3.139	2.791	1.875	2.318	1.532	0.381	nan	nan	0.691	1.093	0.468	0.645	0.390	0.192	0.697	0.843	0.344	0.246	0.584	1.304	1.065	0.681	0.175	0.397	0.039	0.155	0.634	2.181	0.090	0.062	0.485	0.209
27	chr1	2274371	2276988	+	0	NA	intron (NM_024848, intron 10 of 13)	intron (NM_024848, intron 10 of 13)	8421	NR_024489	100129534	Hs.655313	NM_001127577	ENSG00000269896	LOC100129534	-	small nuclear ribonucleoprotein polypeptide N pseudogene	pseudo	1.817	nan	0.946	0.236	0.533	0.270	0.132	0.203		0.059	0.030		0.176	0.043	0.108	0.554	0.490	0.287	0.291	0.592	0.379	0.259	0.246	0.301	0.255	0.356	nan	nan	2.475	nan	1.235	0.791	1.290	0.097	0.058	0.305	0.320	0.460	0.435	4.898	0.947		0.061	0.132		4.530	0.246	0.632	
3909	chr18	75362095	75368562	+	0	NA	Intergenic	Intergenic	340355	NR_104127	101927715	Hs.385670	NR_104127		LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA	nan	nan	0.796	0.068	0.333	0.074	0.413	0.046	0.050	0.218	0.215	0.351	1.003		0.096	0.264	0.344	0.274	0.197	0.939	nan	10.712	2.700	0.366	0.424	0.227	0.276	0.855	nan	0.648	0.410	0.153	0.186	0.143	0.100	0.087	0.096	0.856	0.631	0.112	0.138		0.037	0.413	0.351	0.075	0.237	0.031	0.019
5255	chr22	36826448	36832822	+	0	NA	Intergenic	Intergenic	-45523	NM_002473	4627	Hs.474751	NM_002473	ENSG00000100345	MYH9	BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA	myosin heavy chain 9	protein-coding	1.232	nan	0.998	4.270	7.261	4.203	0.707	0.205	0.075	1.706	1.045	7.059	5.181	0.288	0.164	0.345	0.528	0.378	0.908	4.543	4.892	7.177	2.234	0.278	0.357	0.378	nan	10.829	8.601	nan	0.970	0.357	0.483	2.579	1.969	0.377	1.532	2.504	1.100	6.473	2.658	0.593	0.062	0.707	7.059	0.488	4.867	0.123	0.174
1866	chr12	24088180	24105906	+	0	NA	intron (NM_152989, intron 4 of 17)	intron (NM_152989, intron 4 of 17)	5594	NM_001330785	6660	Hs.434948	NM_006940	ENSG00000134532	SOX5	L-SOX5|L-SOX5B|L-SOX5F|LAMSHF	SRY-box 5	protein-coding	nan	nan	nan	0.555	0.685	0.446	0.534	0.055	0.063	0.619	0.503	1.443	0.718	0.717	0.124	0.195	0.248	0.271	0.340	2.397	2.633	2.585	0.793	0.396	0.421	5.931	7.045	0.505	0.497	7.261	8.071	0.264	0.333	1.148	1.040	0.507	1.207	0.948	0.627	0.015	0.059	0.327	0.093	0.534	1.443	0.224	0.333	0.100	0.471
5216	chr22	25796512	25822289	+	0	NA	Intergenic	MSTA-int|LTR|ERVL-MaLR	-31856	NM_001135772	91355	Hs.634058	NM_182492	ENSG00000100068	LRP5L	-	LDL receptor related protein 5 like	protein-coding	1.509	nan	1.143	0.412	4.626	2.490	0.739	0.374	0.168	0.635	0.345	1.232	4.637	0.190	0.083	0.608	1.041	0.389	0.749	6.274	5.058	1.491	0.535	0.538	0.541	2.635	3.270	1.332	1.886	1.281	1.364	0.394	0.699	3.618	3.967	0.402	0.504	3.876	2.106	0.296	0.540	1.446	0.422	0.739	1.232	0.925	1.154	0.149	0.126
3736	chr18	34829177	34850639	+	0	NA	intron (NM_001025087, intron 10 of 12)	intron (NM_001025087, intron 10 of 12)	-14515	NR_134588	105372068	Hs.569903	NR_134588	ENSG00000267202	LOC105372068	-	uncharacterized LOC105372068	ncRNA	nan	0.746	1.525	0.244	0.285	0.149	0.558	0.042	0.045	0.069	0.081	0.681	1.692	0.116	0.061	3.958	4.207	0.300	0.243	0.850	0.829	2.074	0.741	0.429	0.413	0.338	0.523	nan	2.311	0.677	0.725	0.890	1.101	0.488	0.464	0.288	0.377	1.611	1.372	0.108	0.237	0.114	0.248	0.558	0.681	0.223	0.033	0.208	0.086
1310	chr11	12250875	12280494	+	0	NA	intron (NR_144418, intron 20 of 25)	intron (NR_144418, intron 20 of 25)	-42763	NM_032867	84953	Hs.128196	NM_032867	ENSG00000133808	MICALCL	Ebitein1	MICAL C-terminal like	protein-coding	0.945	nan	3.285	3.877	0.598	0.358	0.559	0.351	0.097	0.984	0.691	2.626	6.743	0.044	0.074	nan	1.738	0.927	1.582	3.057	2.985	5.832	1.406	1.252	1.492	0.923	nan	3.708	2.954	1.428	1.743	1.594	2.879	3.583	3.374	0.401	0.879	2.557	nan	5.221	1.064	1.364	0.211	0.559	2.626	0.210	0.388	2.081	0.426
5901	chr4	54454876	54461272	+	0	NA	promoter-TSS (NM_001126328)	promoter-TSS (NM_001126328)	-321	NM_001126328	84708	Hs.518760	NM_032622	ENSG00000072201	LNX1	LNX|MPDZ|PDZRN2	ligand of numb-protein X 1	protein-coding	nan	2.118	1.324	3.672	4.009	1.724	0.299	0.139	0.126	1.758	0.542	2.486	1.053	0.034	0.077	0.897	1.170	4.185	5.610	0.247	0.371	11.739	5.247	0.281	0.363	0.361	0.771	6.355	7.842	0.367	0.145	0.893	1.802	2.827	4.246	0.405	1.329	2.080	1.458	0.035	0.208	0.788	1.104	0.299	2.486	0.030	0.265	0.994	0.171
3459	chr17	53489040	53529241	+	0	NA	Intergenic	AluJb|SINE|Alu	-9799	NM_012329	23531	Hs.463483	NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding	1.655	1.051	1.525	0.276	0.767	0.392	0.324	0.442	0.109	0.324	0.218	0.265	1.091	0.164	0.120	0.613	0.609	0.590	0.883	0.867	0.778	0.457	0.187	nan	0.855	0.829	1.243	nan	nan	1.337	1.161	0.241	0.458	0.349	0.334	2.135	6.484	0.734	0.588	0.104	0.291	0.096	0.478	0.324	0.265	0.133	0.232	0.120	1.629
2115	chr12	104447703	104459249	+	0	NA	intron (NM_031302, intron 1 of 11)	intron (NM_031302, intron 1 of 11)	4479	NM_001316967	83468	Hs.631650	NM_031302	ENSG00000120820	GLT8D2	-	glycosyltransferase 8 domain containing 2	protein-coding	1.987	1.540	nan	1.111	0.554	0.235	0.991	1.479	0.259	0.991	0.551	1.582	1.916	0.980	0.139	0.777	1.101	0.882	1.525	2.263	2.337	4.725	1.375	1.562	1.579	1.309	1.888	1.816	1.956	5.346	5.120	0.651	1.155	4.755	4.146	1.330	3.290	4.287	2.168	1.571	1.736	1.510	0.422	0.991	1.582	0.514	1.172	0.454	1.195
4703	chr2	213212657	213233920	+	0	NA	intron (NM_005235, intron 1 of 27)	intron (NM_005235, intron 1 of 27)	67796	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA	nan	0.965	nan	0.140	0.244	0.204	0.127	0.094	0.068	0.067	0.097	0.085	0.295	0.113	0.030	0.880	0.801	4.149	5.203	0.192	0.238	1.906	0.812	0.521	0.612	5.170	6.058	0.485	nan	0.380	0.168	0.519	0.804	1.148	2.390	0.363	0.556	0.221	0.278	0.038	0.059	0.352	0.235	0.127	0.085	0.036	0.038	0.453	0.117
6512	chr5	151149328	151154063	+	0	NA	promoter-TSS (NR_132346)	promoter-TSS (NR_132346)	42	NR_132345	100652758	Hs.587054	NM_001278082		LOC100652758	-	uncharacterized LOC100652758	ncRNA	6.417	nan	4.533	4.323	7.552	3.389	2.808	2.779	0.340	1.190	0.808	5.102	11.819	5.866	0.184	5.252	5.248	9.215	12.489	8.954	7.375	6.823	2.969	9.045	9.186	4.626	5.839	10.740	16.126	8.412	10.452	5.950	11.209	8.410	8.505	7.763	5.981	2.360	1.153	3.900	5.354	2.056	4.410	2.808	5.102	1.188	4.237	2.739	2.059
7112	chr6	170488267	170504101	+	0	NA	Intergenic	Intergenic	20318	NR_125878	102724511	Hs.550045	NR_125878		LOC102724511	-	uncharacterized LOC102724511	ncRNA	nan	1.062	nan	0.616	2.701	1.345	0.659	0.061	0.064	0.456	0.358	3.579	1.368	0.412	0.091	1.152	1.697	0.330	0.438	nan	3.406	nan	1.391	1.115	1.120	0.125	0.201	nan	2.076	1.507	1.447	1.075	1.028	3.327	2.848	0.523	1.262	2.180	1.037	2.398	0.672	0.755	0.455	0.659	3.579	0.579	2.226	0.551	0.305
4578	chr2	166042351	166077680	+	0	NA	intron (NM_001081677, intron 1 of 27)	intron (NM_001081677, intron 1 of 27)	562	NM_001081677	6328	Hs.435274	NM_006922	ENSG00000153253	SCN3A	NAC3|Nav1.3	sodium voltage-gated channel alpha subunit 3	protein-coding	0.785	1.260	nan	5.265	4.399	2.265	0.239	0.097	0.104	2.626	1.872	4.518	1.434	0.049	0.088	0.606	0.575	0.599	0.432	0.873	1.082	5.065	2.163	0.365	0.447	0.540	0.732	4.067	3.894	0.692	0.399	0.258	0.468	0.023	0.020	0.392	0.768	2.132	1.103	0.107	0.390	0.003	0.146	0.239	4.518	0.089	0.551	0.207	0.102
4489	chr2	129026537	129051500	+	0	NA	intron (NM_004807, intron 1 of 1)	MLT1J|LTR|ERVL-MaLR	37153	NM_004807	9394	Hs.512841	NM_004807	ENSG00000136720	HS6ST1	HH15|HS6ST	heparan sulfate 6-O-sulfotransferase 1	protein-coding	1.160	nan	nan	0.266	0.282	0.155	0.282	0.076	0.059	0.081	0.150	0.120	0.535	0.052	0.060	0.411	0.623	0.313	0.517	0.435	0.466	0.689	0.224	0.485	0.533	0.562	0.800	0.854	0.973	0.991	1.084	0.362	0.395	0.142	0.154	0.410	0.777	0.821	0.498	0.156	0.154	0.023	0.140	0.282	0.120	0.468	0.310	0.052	0.104
3035	chr16	3193491	3246115	+	0	NA	Intergenic	AluSx|SINE|Alu	25511	NR_132322	197350	Hs.434132	NR_132322	ENSG00000228146	CASP16P	CASP16	caspase 16, pseudogene	pseudo	0.898	nan	0.893	0.681	0.612	0.354	0.264	0.220	0.110	0.236	0.183	0.227	2.421	0.545	0.090	0.375	0.393	0.237	0.372	0.485	0.449	nan	0.734	0.648	0.742	0.336	nan	0.537	0.613	1.362	1.265	0.282	0.404	0.899	0.821	0.488	1.158	0.699	0.427	0.235	0.558	0.113	0.089	0.264	0.227	0.192	0.377	0.111	0.196
6306	chr5	69947560	69955928	+	0	NA	Intergenic	AluSg|SINE|Alu	-70115	NR_027386	653188	Hs.631974	NR_027386	ENSG00000253203	GUSBP3	-	glucuronidase, beta pseudogene 3	pseudo	0.806	1.801	0.611	0.117	0.339	0.153	0.496	0.094	0.060	1.907	1.160	0.109	0.309	0.118	0.102	0.397	0.346	0.134	0.387	0.312	0.454	7.327	7.197	0.166	0.131	2.793	2.967	0.271	0.333	0.450	0.192	0.096	0.134	6.494	7.561	0.170	0.142	1.050	0.709		0.200	3.382	0.029	0.496	0.109	0.047	0.037		0.045
6939	chr6	123639622	123681163	+	0	NA	intron (NM_006073, intron 21 of 40)	AluSx1|SINE|Alu	-100357	NR_110844	101927990	Hs.660877	NR_110844		HRAT13	-	heart tissue-associated transcript 13	ncRNA	0.751	0.839	0.819	0.261	0.288	0.223	0.163	0.093	0.074	0.197	0.167	0.386	0.340	0.044	0.110	0.380	0.239	0.226	0.225	0.485	0.673	2.983	1.169	0.253	0.261	0.382	0.491	0.749	0.554	0.387	0.191	0.128	0.288	0.217	0.157	0.206	0.336	3.219	1.841	0.047	0.144	0.028	0.059	0.163	0.386	0.007	0.049	0.110	0.062
769	chr1	200859428	200868381	+	0	NA	promoter-TSS (NM_001142569)	promoter-TSS (NM_001142569)	-45	NM_001142569	55765	Hs.518997	NM_018265	ENSG00000163362	C1orf106	-	chromosome 1 open reading frame 106	protein-coding	1.995	1.662	2.519	0.165	0.343	0.178	0.309	0.434	0.018	0.222	0.100	0.187	0.320	1.010	0.105	0.645	0.763	6.329	10.596	0.555	0.490	1.920	0.682	nan	nan	0.327	0.677	0.810	0.902	1.297	1.191	0.535	0.621	0.187	0.160	0.465	0.617	0.628	0.573	0.386	0.080	0.032	0.144	0.309	0.187	0.044	0.080	0.066	0.096
1181	chr10	95217212	95257488	+	0	NA	intron (NM_013451, intron 1 of 53)	AluSx1|SINE|Alu	4724	NM_133337	26509	Hs.602086	NM_013451	ENSG00000138119	MYOF	FER1L3	myoferlin	protein-coding	0.986	2.131	1.557	0.748	0.457	0.228	0.293	1.565	0.385	0.194	0.146	0.540	2.048	0.360	0.088	0.572	0.630	1.255	3.355	0.800	0.662	1.791	0.379	0.580	0.517	0.477	0.788	nan	3.143	0.347	0.225	0.187	0.344	0.268	0.311	0.324	0.515	0.626	0.413	0.631	0.581	0.050	0.166	0.293	0.540	0.104	0.491	0.104	0.110
5549	chr3	133156102	133173162	+	0	NA	intron (NR_135277, intron 2 of 3)	MER2|DNA|TcMar-Tigger	9988	NR_135278	85003	Hs.659202	NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA	0.938	nan	nan	0.251	2.943	1.497	0.277	0.324	0.236	0.359	0.238	0.324	0.432	0.038	0.067	0.344	0.305	0.881	1.630	0.499	0.503	6.841	0.859	0.519	0.549	0.702	1.025	0.678	0.457	nan	0.318	0.153	0.308	0.791	1.338	0.280	0.583	1.436	0.657	0.214	0.177	0.084	0.167	0.277	0.324	0.131	0.317	0.040	0.053
6009	chr4	118342075	118356657	+	0	NA	promoter-TSS (NR_125757)	promoter-TSS (NR_125757)	-188	NR_125757	103689918	Hs.582062	NR_125757		LINC01378	-	long intergenic non-protein coding RNA 1378	ncRNA	0.453	0.677	0.495	0.131	0.210	0.110	0.098	0.170	0.126	0.042	0.079	0.098	0.165	0.007	0.056	0.247	0.099	0.428	0.424	0.097	0.174	0.065	0.021	0.107	0.140	3.722	3.976	0.206	0.206	0.341	0.137	0.097	0.147	0.065	0.086	0.145	0.235	0.133	0.174	0.004	0.030	0.032	0.017	0.098	0.098	0.013	0.007	0.027	0.025
7962	chr8	140833176	140878300	+	0	NA	intron (NM_031466, intron 21 of 22)	MLT1D|LTR|ERVL-MaLR	-140439	NM_001282534	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding	1.389	0.890	nan	1.649	0.548	0.278	0.272	0.070	0.054	0.142	0.074	1.413	3.011	0.039	0.067	0.329	0.326	0.214	0.279	nan	1.368	nan	0.960	0.386	0.401	0.350	0.524	1.856	2.008	0.809	0.919	0.396	0.489	0.462	0.674	0.196	0.258	0.625	0.468	1.510	1.600	0.105	0.063	0.272	1.413	0.191	3.135	0.105	0.085
803	chr1	204218234	204259881	+	0	NA	intron (NM_014935, intron 3 of 22)	intron (NM_014935, intron 3 of 22)	-55837	NM_198447	127845	Hs.532401	NM_198447	ENSG00000174567	GOLT1A	CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b	golgi transport 1A	protein-coding	1.184	1.136	1.087	0.427	0.600	0.289	0.409	0.356	0.086	0.219	0.197	0.434	0.614	0.042	0.114	2.550	3.477	1.640	1.432	0.909	0.929	1.196	0.518	nan	nan	1.355	2.001	0.932	1.253	0.919	0.658	0.692	1.165	0.105	0.104	0.512	0.823	0.633	0.563	0.446	0.530	0.027	0.153	0.409	0.434	0.154	0.051	0.731	0.229
6027	chr4	140647769	140663136	+	0	NA	intron (NM_018717, intron 3 of 5)	intron (NM_018717, intron 3 of 5)	68530	NM_002413	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	1.496	1.172	1.769	1.524	2.939	1.732	0.559	0.513	0.143	1.222	0.784	3.689	1.563	0.033	0.080	0.394	0.397	0.264	0.533	3.149	3.162	2.386	0.819	0.185	0.229	1.729	2.040	1.875	2.340	1.306	1.551	0.455	0.730	1.301	1.332	1.736	2.614	1.973	1.279	0.856	1.306	0.384	0.943	0.559	3.689	0.378	0.468	0.275	0.633
2559	chr14	36812183	36820079	+	0	NA	Intergenic	Intergenic	-26249	NM_001308110	51562	Hs.368647	NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding	1.231	2.464	1.113	3.879	3.755	1.899	0.978	0.143	0.102	0.737	0.303	1.439	7.232	0.062	0.130	0.158	0.149	0.234	0.182	2.845	3.359	0.803	0.277	0.273	0.273	0.554	0.712	4.720	4.744	1.180	0.779	0.130	0.177	3.011	2.948	0.181	0.230	3.939	1.656	10.880	2.994	0.872	1.249	0.978	1.439	0.086	0.950	0.038	0.110
4133	chr19	49953829	49958325	+	0	NA	promoter-TSS (NM_001145396)	promoter-TSS (NM_001145396)	-396	NM_153329	126133	Hs.719998	NM_153329	ENSG00000161618	ALDH16A1	-	aldehyde dehydrogenase 16 family member A1	protein-coding	6.778	3.299	6.080	3.986	10.318	5.950	4.562	2.692	0.820	2.652	1.093	4.465	9.241	5.531	0.239	5.905	5.610	6.309	9.801	10.060	8.706	14.347	6.098	16.217	18.352	7.290	8.570	8.539	12.524	12.889	12.213	3.193	4.427	6.850	10.034	6.987	9.702	5.330	2.419	5.250	5.574	1.592	2.542	4.562	4.465	1.973	3.099	1.696	3.394
4796	chr2	242819278	242848181	+	0	NA	intron (NR_110220, intron 2 of 3)	intron (NR_110220, intron 2 of 3)	7562	NR_135768	285095	Hs.85890	NR_135766	ENSG00000216921	LOC285095	-	uncharacterized LOC285095	ncRNA	1.337	nan	2.622	1.596	1.055	0.611	0.683	0.045	0.028	0.293	0.154	1.309	4.710	0.299	0.102	0.816	0.860	0.465	0.602	1.355	1.230	1.171	0.287	0.710	0.771	0.437	0.669	3.445	4.973	1.403	1.541	0.490	0.661	0.311	0.344	1.394	1.990	1.299	0.568	4.877	1.053	0.027	0.172	0.683	1.309	0.225	1.221	0.186	0.656
5890	chr4	49145920	49146890	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	157746	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding	15.363	18.022	16.003	9.569	11.945	6.757	8.344	3.746	20.532	3.366	12.547	3.399	15.226	1.988	13.103	8.067	2.488	2.884	3.969	7.470	10.785	3.603	2.421	5.011	5.535	7.386	11.667	4.669	4.258	10.406	1.918	2.702	4.202	2.414	5.236	3.560	5.181	4.205	4.853	0.902	10.501	3.723	2.607	8.344	3.399	1.962	2.097	2.396	3.005
8070	chr9	15550180	15555170	+	0	NA	promoter-TSS (NM_001348002)	promoter-TSS (NM_001348002)	-330	NM_173550	203238	Hs.17267	NM_173550	ENSG00000164989	CCDC171	C9orf93|bA536D16.1|bA778P13.1	coiled-coil domain containing 171	protein-coding	nan	nan	2.440	3.406	5.093	2.637	3.656	1.075	0.313	1.621	1.463	3.673	9.787	2.283	0.113	0.776	1.473	1.963	2.668	8.230	5.901	7.112	2.359	3.275	3.011	2.389	3.225	4.064	6.154	3.497	3.815	2.327	2.977	7.854	5.907	1.875	2.798	7.341	3.782	3.469	2.820	1.465	2.697	3.656	3.673	0.894	2.079	2.355	1.194
1245	chr10	125231441	125246683	+	0	NA	Intergenic	MIR3|SINE|MIR	-186809	NM_153442	2849	Hs.12751	NM_153442	ENSG00000154478	GPR26	-	G protein-coupled receptor 26	protein-coding	nan	0.491	0.534	0.076	0.740	0.565	0.310	0.078	0.073	0.010	0.060	0.198	0.297	0.021	0.079	6.883	6.195	7.682	2.557	0.275	0.326	1.432	0.661	1.263	1.444	0.105	0.144	0.221	0.328	0.250	0.154	3.223	4.363	0.048	0.055	0.077	0.153	0.478	0.409	0.083	0.128	0.006	0.085	0.310	0.198	0.165	0.054	3.230	0.025
7596	chr8	11653675	11666754	+	0	NA	promoter-TSS (NM_001287745)	promoter-TSS (NM_001287745)	94	NM_001287745	2222	Hs.593928	NM_004462	ENSG00000079459	FDFT1	DGPT|ERG9|SQS|SS	farnesyl-diphosphate farnesyltransferase 1	protein-coding	1.693	1.959	nan	1.708	2.347	1.223	3.058	1.259	0.346	1.021	0.782	5.658	1.922	1.629	0.172	2.620	2.536	1.712	3.068	6.195	nan	3.414	2.286	5.492	5.502	1.786	2.418	2.056	3.705	3.228	2.700	1.254	2.846	1.789	1.536	2.510	4.171	2.928	1.390	3.064	2.789	0.723	0.556	3.058	5.658	0.461	1.393	1.489	2.034
5587	chr3	143312975	143319422	+	0	NA	intron (NM_173653, intron 6 of 15)	LTR18B|LTR|ERVL	251175	NM_173653	285195	Hs.302257	NM_173653	ENSG00000181804	SLC9A9	AUTS16|NHE9	solute carrier family 9 member A9	protein-coding	0.973	nan	nan	0.194	1.637	0.941	0.599	0.219	0.080	0.148	0.159	0.074	0.230	0.033	0.099	0.391	0.804	0.463	0.496	0.561	0.458	nan	5.061	0.345	0.251	0.630	nan	0.260	nan	nan	0.334	0.110	0.185	0.741	0.678	0.241	0.430	0.463	0.599	0.045	0.042	0.029	0.560	0.599	0.074	0.090	0.016	0.044	0.171
6004	chr4	117439831	117459789	+	0	NA	Intergenic	Intergenic	228929	NR_031737	100302290		NR_031737	ENSG00000270394	MIR1973	hsa-mir-1973|mir-1973	microRNA 1973	ncRNA	0.467	0.676	0.575	0.114	0.165	0.136	0.084	0.087	0.049	0.048	0.067	0.097	0.166	0.022	0.096	0.229	0.153	0.167	0.227	0.131	0.145	0.082	0.074	0.118	0.107	6.219	7.174	0.188	0.202	0.610	0.431	0.147	0.158	0.062	0.066	0.196	0.459	0.187	0.201	0.011	0.022	0.010	0.008	0.084	0.097	0.015	0.041	0.044	0.049
6301	chr5	69203905	69211585	+	0	NA	Intergenic	Intergenic	-113327	NM_021967	8293	Hs.726820	NM_021967	ENSG00000172058	SERF1A	4F5|FAM2A|H4F5|SERF1|SMAM1	small EDRK-rich factor 1A	protein-coding	2.465	6.009	2.572	0.447	0.552	0.337	0.473	0.355	0.255	0.163	0.147	0.257	0.477	0.226	0.174	0.398	0.402	1.127	1.355	0.820	0.995	1.524	0.649	0.883	0.761	1.388	2.311	0.815	1.013	1.166	0.765	0.248	0.605	0.456	0.599	0.719	1.000	1.047	0.615	0.065	0.401	0.248	0.318	0.473	0.257	0.052	0.079	0.039	0.151
7273	chr7	47508208	47536124	+	0	NA	intron (NM_022748, intron 3 of 30)	intron (NM_022748, intron 3 of 30)	99576	NM_022748	64759	Hs.520814	NM_022748	ENSG00000136205	TNS3	TEM6|TENS1	tensin 3	protein-coding	1.480	2.060	nan	2.226	0.331	0.173	1.715	0.782	0.161	1.835	0.813	2.973	1.112	0.517	0.147	0.451	0.503	0.739	2.718	2.284	2.957	4.824	1.738	0.509	0.541	0.131	0.271	1.993	3.209	0.347	0.253	0.282	0.295	1.950	1.909	0.245	0.334	1.733	0.998	0.024	0.048	0.477	0.348	1.715	2.973	0.337	0.386	0.350	0.039
1388	chr11	40198884	40212557	+	0	NA	intron (NM_020929, intron 3 of 4)	intron (NM_020929, intron 3 of 4)	108960	NR_047674	57689	Hs.745123	NM_020929	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding	nan	1.640	0.663	0.067	0.250	0.175	0.074	0.066	0.088	0.160	0.171	0.026	2.187	0.048	0.109	0.442	0.311	0.176	0.381	0.247	0.264	0.385	0.198	0.123	0.142	0.173	0.372	1.149	1.532	0.220	0.075	0.110	0.181	3.842	4.595	0.323	nan	1.506	1.009	1.618	0.143	1.647	0.018	0.074	0.026		0.496	0.050	0.160
1676	chr11	116965704	116970543	+	0	NA	intron (NM_025164, intron 1 of 23)	intron (NM_025164, intron 1 of 23)	1008	NM_025164	23387	Hs.167451	NM_025164	ENSG00000160584	SIK3	L19|QSK|SIK-3	SIK family kinase 3	protein-coding	2.768	2.940	2.210	2.879	3.988	2.780	3.040	0.827	0.033	1.981	0.794	3.490	7.176	3.333	0.171	5.427	nan	4.272	6.415	4.932	4.589	7.096	5.835	7.007	6.747	5.305	nan	7.003	9.556	4.833	5.350	8.283	16.095	5.229	5.277	5.430	4.890	2.699	1.828	3.083	3.938	0.918	1.996	3.040	3.490	1.179	3.086	4.524	0.991
346	chr1	65612494	65625422	+	0	NA	intron (NM_001330616, intron 1 of 4)	AluJb|SINE|Alu	4272	NM_001330616	205	Hs.10862	NM_013410	ENSG00000162433	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding	2.383	1.180	nan	0.762	1.048	0.562	0.692	0.256	0.151	0.471	0.401	0.871	2.023	0.898	0.127	4.419	5.593	1.976	1.874	2.519	2.293	3.035	0.575	3.037	3.169	nan	nan	1.237	nan	1.125	2.094	1.875	4.366	0.484	0.188	1.625	2.661	1.080	0.853	0.233	0.323	0.059	1.730	0.692	0.871	0.352	0.464	1.832	1.658
3085	chr16	20910328	20914198	+	0	NA	promoter-TSS (NR_126527)	promoter-TSS (NR_126527)	-132	NR_126527	57149	Hs.745012	NM_020424	ENSG00000102897	LYRM1	A211C6.1	LYR motif containing 1	protein-coding	5.942	2.916	nan	5.949	5.944	3.556	5.462	2.799	0.167	2.915	0.974	5.766	10.255	2.573	0.129	7.547	6.651	4.059	5.162	7.782	8.361	11.560	7.872	15.801	16.897	4.414	5.769	15.731	21.268	9.447	8.907	5.755	8.643	5.647	4.246	5.976	9.812	4.173	2.681	2.986	2.229	0.766	2.089	5.462	5.766	2.163	3.220	2.271	3.910
6503	chr5	147541827	147591964	+	0	NA	Intergenic	L1MD|LINE|L1	-15462	NM_001195290	404203	Hs.334274	NM_205841	ENSG00000178172	SPINK6	BUSI2|UNQ844	serine peptidase inhibitor, Kazal type 6	protein-coding	nan	0.761	0.511	0.098	0.288	0.109	0.020	0.107	0.064	0.053	0.074	0.121	0.301	0.035	0.098	0.233	0.161	12.716	8.770	0.208	0.259	0.412	0.138	0.115	0.140	0.343	0.468	0.377	0.361	0.406	0.184	0.161	0.233	0.096	0.140	0.230	0.472	0.451	0.405	0.009	0.069	0.028	0.022	0.020	0.121	0.017	0.021	0.049	0.111
650	chr1	168194335	168201049	+	0	NA	intron (NM_199344, intron 1 of 7)	intron (NM_199344, intron 1 of 7)	2437	NM_199344	375035	Hs.645435	NM_199344	ENSG00000213064	SFT2D2	UNQ512|dJ747L4.C1.2	SFT2 domain containing 2	protein-coding	4.050	nan	4.480	2.596	2.256	1.194	3.263	1.337	0.106	2.026	0.771	3.590	5.748	1.699	0.192	4.097	3.719	5.936	8.143	6.235	nan	4.440	1.874	3.209	3.407	3.248	4.044	4.214	nan	2.312	2.315	8.122	13.750	3.096	3.055	2.696	3.096	2.490	1.596	1.730	3.666	0.507	0.982	3.263	3.590	0.449	1.667	11.371	0.677
2202	chr12	125396285	125426483	+	0	NA	Intergenic	Intergenic	11291	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA	2.702	3.004	2.228	1.829	3.821	2.201	2.372	1.827	0.406	1.543	1.102	2.296	7.301	4.356	0.190	2.818	4.390	2.749	4.128	4.541	4.391	nan	3.195	5.292	5.578	2.706	3.482	5.219	8.518	3.593	3.513	2.296	4.295	2.748	3.306	2.662	4.479	3.117	1.734	2.948	3.032	0.476	0.926	2.372	2.296	0.551	2.311	2.113	1.270
1154	chr10	79253883	79292632	+	0	NA	intron (NM_001322832, intron 1 of 27)	L2b|LINE|L2	124320	NM_001322837	3778	Hs.144795	NM_002247	ENSG00000156113	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding	0.844	nan	1.208	1.261	0.456	0.269	0.314	0.218	0.103	0.084	0.081	0.738	1.393	0.034	0.078	0.334	0.305	0.185	0.325	0.973	0.953	1.699	0.554	0.145	0.170	0.428	0.675	4.360	nan	0.386	0.387	0.357	0.511	0.255	0.539	0.479	nan	0.673	0.525	0.159	1.156	0.044	0.140	0.314	0.738	0.189	0.100	0.158	0.375
4635	chr2	183382123	183389814	+	0	NA	intron (NM_001003683, intron 2 of 14)	intron (NM_001003683, intron 2 of 14)	1368	NM_005019	5136	Hs.191046	NM_005019	ENSG00000115252	PDE1A	CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A	phosphodiesterase 1A	protein-coding	1.989	0.966	1.264	0.526	2.143	1.586	0.833	0.147	0.167	1.911	0.793	0.563	1.372	0.028	0.092	0.393	0.335	0.224	0.284	3.381	3.670	7.508	3.837	0.324	0.275	7.573	8.729	0.924	0.992	0.904	0.971	0.238	0.395	1.955	1.288	0.680	nan	2.052	1.560	0.138	0.069	0.198	0.114	0.833	0.563	0.745	0.185	0.329	0.200
895	chr1	226185220	226191520	+	0	NA	Intergenic	AluSg|SINE|Alu	-1304	NM_152608	163859	Hs.520192	NM_152608	ENSG00000143751	SDE2	C1orf55|dJ671D7.1	SDE2 telomere maintenance homolog	protein-coding	3.606	nan	3.651	3.969	4.908	3.021	3.503	1.359	0.170	4.668	1.730	4.182	4.830	2.306	0.111	7.806	10.285	5.919	7.966	5.002	nan	7.397	4.676	8.862	9.889	3.035	3.727	5.712	7.993	2.665	2.804	1.845	3.196	5.271	5.226	3.765	6.094	4.572	2.468	1.733	2.311	0.672	0.793	3.503	4.182	1.331	3.097	2.162	0.895
7318	chr7	72236710	72258351	+	0	NA	intron (NM_001145440, intron 6 of 14)	intron (NM_001145440, intron 6 of 14)	51283	NM_001145440	441250	Hs.488614	NM_001145440	ENSG00000277149	TYW1B	LINC00069|NCRNA00069|RSAFD2	tRNA-yW synthesizing protein 1 homolog B	protein-coding	nan	0.681	1.247	0.197	0.521	0.276	0.291	0.411	0.240	0.484	0.280	0.260	0.436	0.085	0.198	0.457	0.406	0.419	nan	0.413	0.540	1.338	0.391	0.237	0.223	1.441	nan	0.320	nan	0.635	0.409	0.179	0.302	0.283	0.528	0.628	1.328	3.175	1.358	0.110	0.234	0.044	0.510	0.291	0.260	0.219	2.108	0.062	0.416
5237	chr22	29661511	29668043	+	0	NA	promoter-TSS (NM_001329536)	promoter-TSS (NM_001329536)	-625	NM_001329536	25807	Hs.106730	NM_012265	ENSG00000100263	RHBDD3	C22orf3|HS984G1A|PTAG	rhomboid domain containing 3	protein-coding	nan	2.691	4.440	4.193	8.493	4.384	7.446	3.779	0.276	1.898	0.972	8.025	8.306	4.384	0.124	9.267	7.874	10.226	nan	7.738	9.011	6.689	5.109	17.624	19.029	6.978	8.085	7.079	11.653	13.432	12.643	6.304	10.444	7.581	11.743	10.556	nan	6.745	3.507	3.060	3.805	2.462	3.106	7.446	8.025	3.384	3.221	3.286	3.569
1910	chr12	32258635	32270387	+	0	NA	intron (NM_001003398, intron 1 of 8)	intron (NM_001003398, intron 1 of 8)	4326	NM_001714	636	Hs.505202	NM_001714	ENSG00000151746	BICD1	BICD	BICD cargo adaptor 1	protein-coding	2.900	nan	2.262	2.067	1.028	0.615	1.827	0.985	0.166	0.893	0.528	1.999	2.965	1.125	0.142	1.786	1.783	2.010	4.207	4.159	3.963	2.366	0.830	3.451	3.709	2.980	3.467	1.176	1.770	3.790	4.009	1.042	1.979	4.929	6.677	2.215	4.104	1.275	0.995	0.828	1.433	1.270	1.678	1.827	1.999	0.538	0.882	0.522	1.184
2762	chr14	100606225	100626343	+	0	NA	intron (NM_206918, intron 1 of 2)	intron (NM_206918, intron 1 of 2)	9728	NM_206918	123099	Hs.159643	NM_206918	ENSG00000168350	DEGS2	C14orf66|DES2|FADS8	delta 4-desaturase, sphingolipid 2	protein-coding	1.380	2.445	1.481	0.532	0.417	0.250	0.304	0.223	0.219	0.264	0.142	0.472	1.415	0.111	0.076	0.428	0.726	0.269	0.498	1.358	1.102	0.583	0.157	0.186	0.223	0.467	0.788	0.735	1.267	0.585	0.472	0.798	1.034	0.279	0.276	0.160	0.181	0.828	0.537	5.326	0.860	0.047	0.093	0.304	0.472	0.139	0.076	0.754	0.066
3076	chr16	19247238	19260184	+	0	NA	intron (NM_001330509, intron 7 of 7)	L2b|LINE|L2	-43394	NM_001256720	728276	Hs.632180	NM_001256720	ENSG00000261210	CLEC19A	-	C-type lectin domain family 19 member A	protein-coding	0.689	0.867	nan	1.068	0.696	0.336	0.267	0.074	0.095	0.073	0.171	2.177	2.373	0.017	0.094	0.200	0.108	0.104	0.123	0.773	0.891	3.596	1.233	0.121	0.155	0.166	0.273	10.865	9.447	nan	0.152	0.080	0.145	0.257	0.277	0.200	0.252	0.841	0.575	1.954	0.728	0.051	0.239	0.267	2.177	0.127	0.039	0.031	0.029
7885	chr8	114374584	114453036	+	0	NA	intron (NM_052900, intron 1 of 68)	intron (NM_052900, intron 1 of 68)	-24428	NM_198124	114788	Hs.91381	NM_052900	ENSG00000164796	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding	nan	nan	1.042	0.118	0.233	0.133	0.081	0.096	0.083	2.353	1.650	0.098	1.629	0.036	0.079	0.412	0.308	0.053	0.066	0.337	0.459	nan	1.654	0.746	nan	2.064	nan	0.357	0.428	0.774	0.598	0.115	0.219	5.383	6.138	0.581	1.100	0.567	0.462	0.034	0.099	1.158	0.107	0.081	0.098	0.006	0.380	0.032	0.150
3608	chr17	79001875	79032298	+	0	NA	intron (NM_017451, intron 1 of 14)	intron (NM_017451, intron 1 of 14)	8139	NM_006340	10458	Hs.128316	NM_006340	ENSG00000175866	BAIAP2	BAP2|FLAF3|IRSP53	BAI1 associated protein 2	protein-coding	1.420	0.958	3.259	0.410	0.745	0.378	2.524	0.105	0.117	0.294	0.208	0.492	1.331	0.486	0.106	1.802	2.458	0.542	0.898	1.086	0.942	0.803	0.303	0.279	0.248	nan	1.266	0.866	1.281	2.029	2.159	0.921	1.348	0.540	0.563	1.107	1.889	nan	0.532	0.150	1.142	0.119	0.115	2.524	0.492	0.242	0.588	0.741	0.505
7558	chr7	155375357	155390846	+	0	NA	Intergenic	Intergenic	53999	NR_126344	100506302	Hs.87856	NR_126344	ENSG00000216895	LOC100506302	-	uncharacterized LOC100506302	ncRNA	0.994	0.589	nan	0.115	0.313	0.176	0.453	0.087	0.051	0.124	0.053	0.287	0.312	0.076	0.133	5.133	6.901	0.712	0.531	0.855	0.761	0.360	0.075	0.154	0.167	0.146	0.221	0.180	0.194	0.432	0.234	3.372	5.145	0.131	0.175	0.074	0.151	1.105	0.862	0.922	0.287	0.025	0.026	0.453	0.287	0.164	0.602	4.422	0.048
3264	chr17	7587022	7593658	+	0	NA	promoter-TSS (NM_001143991)	promoter-TSS (NM_001143991)	-418	NM_001143991	55135	Hs.408312	NM_018081	ENSG00000141499	WRAP53	DKCB3|TCAB1|WDR79	WD repeat containing antisense to TP53	protein-coding	6.587	3.574	3.872	4.696	10.117	4.710	6.553	2.171	0.169	2.536	1.119	6.905	12.900	14.652	0.575	15.388	15.202	9.771	12.589	15.030	13.149	10.447	7.664	11.470	11.813	5.185	6.909	10.791	14.448	5.957	8.342	10.095	12.461	6.291	5.860	11.195	13.159	2.918	1.546	7.967	4.910	0.789	4.391	6.553	6.905	2.707	4.271	3.500	3.566
3402	chr17	39843917	39847683	+	0	NA	intron (NM_005801, intron 1 of 3)	CpG	673	NM_005801	10209	Hs.150580	NM_005801	ENSG00000173812	EIF1	A121|EIF-1|EIF1A|ISO1|SUI1	eukaryotic translation initiation factor 1	protein-coding	nan	5.253	4.422	3.578	10.988	6.268	4.469	5.394	0.302	4.926	2.017	5.811	13.828	6.608	0.135	8.527	10.210	8.148	10.012	nan	9.279	9.700	7.070	22.252	24.266	3.623	4.335	12.672	14.783	nan	10.805	4.691	7.285	10.520	10.061	5.709	9.794	4.236	1.739	4.330	5.167	1.612	4.485	4.469	5.811	1.691	2.997	2.104	2.400
6050	chr4	154122387	154156613	+	0	NA	intron (NM_001302693, intron 1 of 2)	AluJo|SINE|Alu	13934	NM_015271	23321	Hs.435711	NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding	nan	1.587	0.767	0.365	0.804	0.501	0.453	0.732	0.089	0.144	0.067	0.683	0.828	0.174	0.095	1.254	1.118	4.111	6.630	0.696	0.708	0.601	0.162	0.631	0.646	0.389	0.586	0.563	0.626	1.513	1.409	2.019	3.620	0.386	0.528	0.801	1.074	0.473	0.474	0.140	0.269	0.052	0.188	0.453	0.683	0.079	0.089	2.153	0.206
3501	chr17	62150107	62209573	+	0	NA	intron (NM_001433, intron 1 of 21)	intron (NM_001433, intron 1 of 21)	27662	NM_001433	2081	Hs.133982	NM_001433	ENSG00000178607	ERN1	IRE1|IRE1P|IRE1a|hIRE1p	endoplasmic reticulum to nucleus signaling 1	protein-coding	1.507	nan	2.038	1.231	0.785	0.391	0.262	0.280	0.117	0.935	0.425	1.323	1.414	0.215	0.121	0.638	0.872	0.409	0.745	0.936	1.199	2.867	1.122	0.768	0.856	0.512	nan	4.076	4.102	1.291	1.051	0.510	0.636	0.761	1.113	1.437	5.715	1.490	0.907	0.178	0.423	0.112	0.403	0.262	1.323	0.156	0.558	0.121	1.311
1982	chr12	58916714	58936372	+	0	NA	Intergenic	L2c|LINE|L2	-58941	NR_126341	100506869	Hs.290456	NR_126341	ENSG00000258231	LOC100506869	-	uncharacterized LOC100506869	ncRNA	nan	0.952	0.669	0.887	0.439	0.261	0.320	0.775	0.066	0.897	0.609	0.432	0.596	0.064	0.089	nan	0.322	0.203	0.358	0.502	nan	5.430	1.953	0.335	0.266	0.363	nan	1.000	nan	0.354	0.119	0.166	0.289	0.679	0.627	0.220	0.342	2.913	1.670	0.023	0.150	0.117	0.085	0.320	0.432	0.064	0.175	0.060	0.208
5226	chr22	28268886	28279719	+	0	NA	intron (NM_012399, intron 7 of 11)	intron (NM_012399, intron 7 of 11)	40900	NM_001284278	23760	Hs.705323	NM_012399	ENSG00000180957	PITPNB	PI-TP-beta|PtdInsTP|VIB1B	phosphatidylinositol transfer protein beta	protein-coding	nan	0.662	0.643	0.149	0.954	0.530	0.226	0.753	0.236	0.218	0.188	0.543	0.435	0.151	0.106	0.415	0.466	0.695	nan	0.921	0.961	0.586	0.245	0.713	0.841	4.056	4.938	0.323	0.389	0.639	0.468	0.271	0.341	0.212	0.270	0.407	nan	2.844	1.487	0.113	0.231	0.062	0.389	0.226	0.543	0.134	0.075	0.064	0.137
3423	chr17	43223579	43240353	+	0	NA	Intergenic	AluSx|SINE|Alu	-5575	NM_001303439	124790	Hs.56382	NM_144608	ENSG00000168517	HEXIM2	L3	hexamethylene bisacetamide inducible 2	protein-coding	3.790	2.991	nan	3.192	5.233	2.642	2.945	2.920	0.409	1.872	0.988	3.595	6.751	4.857	0.237	3.890	4.401	4.245	6.280	4.775	nan	5.045	4.020	11.562	12.432	3.034	3.894	5.027	nan	6.549	5.508	4.552	6.145	3.337	4.315	4.504	4.930	2.189	1.049	2.775	2.570	0.839	1.832	2.945	3.595	0.928	1.863	1.705	1.888
5980	chr4	103745601	103750777	+	0	NA	5' UTR (NM_181892, exon 1 of 8)	5' UTR (NM_181892, exon 1 of 8)	151	NM_181892	7323	Hs.518773	NM_003340	ENSG00000109332	UBE2D3	E2(17)KB3|UBC4/5|UBCH5C	ubiquitin conjugating enzyme E2 D3	protein-coding	6.259	nan	nan	8.700	7.781	4.686	5.284	4.919	0.220	2.618	1.080	6.064	12.293	6.563	0.155	6.810	7.761	12.549	16.600	10.199	9.143	4.989	2.606	19.042	19.127	4.243	nan	7.770	12.257	10.744	11.017	4.626	9.041	6.059	6.371	9.864	8.640	2.768	1.704	3.201	8.235	1.039	5.190	5.284	6.064	0.916	2.276	2.423	2.709
6539	chr5	167579454	167594646	+	0	NA	intron (NM_001080428, intron 9 of 24)	intron (NM_001080428, intron 9 of 24)	72327	NR_109894	101927862	Hs.659376	NR_109894	ENSG00000253978	CTB-178M22.2	-	uncharacterized LOC101927862	ncRNA	nan	0.588	1.405	0.028	0.662	0.401	0.966	0.035	0.083	0.537	0.332	0.165	0.517	0.036	0.094	0.612	0.818	1.236	1.338	0.678	0.465	5.098	1.600	0.070	0.067	0.156	0.277	0.086	0.120	1.553	1.928	0.540	0.939	3.809	2.926	0.405	0.663	1.925	1.042	0.015	0.106	1.086	0.237	0.966	0.165	0.509	0.094	0.408	0.056
6798	chr6	49305506	49311926	+	0	NA	Intergenic	MER4A1|LTR|ERV1	122325	NM_000255	4594	Hs.485527	NM_000255	ENSG00000146085	MUT	MCM	methylmalonyl-CoA mutase	protein-coding	0.795	0.894	0.798	0.961	0.435	0.275	0.278	0.071	0.050	0.145	0.090	0.280	0.721	0.017	0.095	4.768	3.788	8.074	2.037	0.602	0.684	1.327	0.323	8.481	8.752	0.204	0.160	1.414	nan	0.257	0.066	0.656	1.091	0.422	0.536	0.379	0.770	0.443	0.563	0.078	0.055	0.030	0.062	0.278	0.280	0.015	0.032	0.493	0.174
4127	chr19	49135658	49142453	+	0	NA	exon (NM_001352, exon 2 of 4)	exon (NM_001352, exon 2 of 4)	1752	NM_001352	1628	Hs.414480	NM_001352	ENSG00000105516	DBP	DABP	D-box binding PAR bZIP transcription factor	protein-coding	3.810	3.796	4.220	3.762	12.648	6.536	3.988	3.505	0.772	2.187	0.973	4.449	8.748	6.344	0.174	4.178	5.675	3.766	6.452	5.687	5.294	5.701	2.505	9.787	10.515	5.355	5.926	6.561	9.636	6.201	6.110	4.517	5.863	2.825	2.718	2.259	7.294	4.072	1.655	4.686	10.846	0.938	2.018	3.988	4.449	2.146	2.579	3.952	3.672
8167	chr9	79330142	79355539	+	0	NA	intron (NM_001308047, intron 6 of 17)	AluSx|SINE|Alu	-35509	NM_001308050	158471	Hs.262857	NM_015225	ENSG00000106772	PRUNE2	BMCC1|BNIPXL|C9orf65|KIAA0367	prune homolog 2	protein-coding	nan	nan	nan	3.908	0.604	0.347	0.447	0.115	0.076	0.568	0.348	1.671	5.151	0.024	0.075	0.256	0.197	0.274	nan	1.072	nan	3.438	0.965	0.276	0.275	0.133	0.249	3.051	3.846	0.199	0.084	0.116	0.175	2.772	3.686	0.146	0.264	3.208	1.236	0.020	0.570	0.571	0.047	0.447	1.671		0.876	0.039	0.054
2408	chr13	101820269	101834234	+	0	NA	intron (NM_052867, intron 15 of 43)	intron (NM_052867, intron 15 of 43)	-230633	NR_047015	100874161	Hs.143791	NR_047015		LINC00411	-	long intergenic non-protein coding RNA 411	ncRNA	0.708	0.915	0.516	0.089	0.308	0.172	0.602	0.037	0.150	0.056	0.075	0.077	0.286	0.024	0.089	0.710	0.429	0.354	0.564	0.421	0.481	0.419	0.202	0.099	0.107	0.206	nan	0.171	0.217	0.769	0.549	0.116	0.147	0.069	0.105	0.804	nan	0.168	0.176	5.775	0.333	0.035	0.559	0.602	0.077	0.136	0.043	0.064	0.389
6569	chr5	179047575	179052475	+	0	NA	intron (NM_001257293, intron 2 of 13)	CpG	686	NM_001257293	3187	Hs.604001	NM_005520	ENSG00000169045	HNRNPH1	HNRPH|HNRPH1|hnRNPH	heterogeneous nuclear ribonucleoprotein H1 (H)	protein-coding	6.652	5.168	7.099	4.675	5.568	2.846	3.825	3.032	0.383	3.129	1.410	6.831	17.012	6.785	0.235	6.340	6.177	9.270	nan	10.928	9.348	7.201	3.720	8.059	8.606	5.086	nan	6.545	9.468	9.258	9.918	4.089	8.025	9.853	9.443	6.753	6.131	2.234	1.672	8.456	7.544	2.270	3.863	3.825	6.831	1.191	4.042	2.607	3.196
7139	chr7	5302179	5325590	+	0	NA	Intergenic	MIRc|SINE|MIR	-8677	NM_153247	222962	Hs.4302	NM_153247	ENSG00000164638	SLC29A4	ENT4|PMAT	solute carrier family 29 member 4	protein-coding	2.458	1.004	2.299	0.316	0.943	0.438	0.296	0.119	0.171	0.476	0.286	0.699	nan	0.425	0.136	0.426	0.404	0.332	nan	1.355	1.134	nan	0.278	0.660	0.658	0.895	1.249	nan	1.106	0.567	0.581	0.265	0.369	0.223	0.289	1.681	5.451	1.108	0.722	0.506	0.515	0.041	0.335	0.296	0.699	0.252	0.880	0.110	2.225
498	chr1	145506485	145508924	+	0	NA	exon (NM_005105, exon 1 of 6)	exon (NM_005105, exon 1 of 6)	147	NM_005105	9939	Hs.591455	NM_005105	ENSG00000265241	RBM8A	BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1	RNA binding motif protein 8A	protein-coding	9.091	6.289	7.351	8.348	7.878	3.822	11.342	5.827	0.717	5.318	3.236	8.082	24.989	6.868	0.265	14.167	9.101	15.356	21.015	16.824	16.915	13.792	8.372	22.935	24.727	8.847	10.905	12.209	18.430	10.926	10.486	15.603	18.092	6.990	9.207	11.242	11.656	6.561	3.488	7.617	9.977	1.396	3.476	11.342	8.082	2.394	7.527	7.643	4.332
3520	chr17	70556558	70593965	+	0	NA	intron (NR_137281, intron 1 of 4)	intron (NR_137281, intron 1 of 4)	13682	NR_036488	100499467	Hs.157726	NR_036488		LINC00673	HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1	long intergenic non-protein coding RNA 673	ncRNA	1.144	1.735	1.113	2.200	2.840	1.509	1.387	0.143	0.094	3.128	1.320	3.861	5.452	0.133	0.094	2.041	3.536	1.309	2.716	4.396	3.916	4.871	2.255	2.641	2.557	nan	0.641	2.884	3.987	1.070	0.959	0.425	0.946	2.303	2.817	0.176	0.301	nan	1.254	0.862	1.660	0.427	0.649	1.387	3.861	0.244	0.985	0.190	0.053
8012	chr9	2014025	2018947	+	0	NA	intron (NM_003070, intron 1 of 33)	CpG	1267	NM_139045	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	3.352	9.046	4.898	2.496	3.129	1.568	3.831	2.414	0.390	1.546	1.022	3.768	16.575	0.199	0.050	2.012	3.469	5.274	7.743	6.189	4.081	4.833	1.656	11.674	10.716	3.462	5.196	1.711	3.437	5.032	8.451	2.118	6.344	2.025	2.578	0.819	nan	3.122	2.547	0.406	7.772	0.542	4.545	3.831	3.768	2.388	1.867	2.653	0.725
4311	chr2	44314067	44326712	+	0	NA	Intergenic	MSTB2|LTR|ERVL-MaLR	-75553	NM_177969	5495	Hs.416769	NM_002706	ENSG00000138032	PPM1B	PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX	protein phosphatase, Mg2+/Mn2+ dependent 1B	protein-coding	1.951	nan	0.982	0.333	0.627	0.215	0.262	0.177	0.064	0.483	0.271	1.042	1.024	0.207	0.102	0.449	0.641	0.325	0.510	nan	1.050	2.071	0.785	1.087	1.104	0.642	0.890	2.247	1.790	7.135	6.068	0.282	0.393	0.258	0.280	0.996	nan	nan	0.680	0.184	0.591	0.075	0.271	0.262	1.042	0.168	0.280	0.086	1.231
2028	chr12	76175396	76181038	+	0	NA	Intergenic	MamGypLTR1a|LTR|Gypsy	247339	NM_007350	22822	Hs.602085	NM_007350	ENSG00000139289	PHLDA1	DT1P1B11|PHRIP|TDAG51	pleckstrin homology like domain family A member 1	protein-coding	nan	1.146	0.984	0.576	0.265	0.256	0.392	1.705	0.123	0.929	0.367	0.541	1.639	0.096	0.066	0.452	0.285	0.139	0.463	1.530	1.890	0.971	0.270	0.235	0.315	3.154	2.975	nan	2.444	0.395	0.272	0.166	0.268	0.630	0.528	0.262	0.381	nan	1.655	1.568	0.428	0.202	0.069	0.392	0.541	0.516	4.955	0.094	0.130
7218	chr7	26823733	26834035	+	0	NA	intron (NM_001303468, intron 4 of 12)	intron (NM_001303468, intron 4 of 12)	68458	NM_001303468	8935	Hs.200770	NM_003930	ENSG00000005020	SKAP2	PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R	src kinase associated phosphoprotein 2	protein-coding	1.589	1.067	1.425	0.187	0.316	0.133	0.216	0.167	0.108	0.212	0.175	0.105	0.312	0.158	0.165	1.350	1.589	0.905	nan	0.363	0.465	0.659	0.194	0.416	0.390	2.864	3.433	0.373	0.464	0.641	0.386	0.571	0.651	4.297	5.532	0.167	nan	1.199	0.629	0.027	0.103	2.044	0.141	0.216	0.105	0.138	0.030	0.346	0.049
1606	chr11	103302589	103306529	+	0	NA	intron (NM_001377, intron 84 of 88)	MLT1G1-int|LTR|ERVL-MaLR	324399	NM_001080463	79659	Hs.503721	NM_001377	ENSG00000187240	DYNC2H1	ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11	dynein cytoplasmic 2 heavy chain 1	protein-coding	0.507	0.783	0.672	0.155	0.229	0.081	0.154	0.056		0.078	0.109	0.010	0.244	0.143	0.109	6.972	7.267	2.507	2.184	0.376	0.509	0.169	0.091	1.400	1.488	0.660	0.946	0.318	0.288	0.374	0.237	12.384	10.397	0.288	0.192	0.219	0.508	0.514	0.442	0.056	0.091	0.024	0.059	0.154	0.010		0.039	11.559	0.164
6156	chr5	6565151	6584563	+	0	NA	Intergenic	Intergenic	-7392	NR_024423	255167	Hs.435515	NR_024423	ENSG00000250056	LINC01018	SRHC	long intergenic non-protein coding RNA 1018	ncRNA	0.498	0.826	1.397	1.280	0.407	0.163	0.113	0.800	0.315	0.344	0.282	2.961	0.949	0.084	0.106	0.481	0.368	0.663	nan	1.356	1.540	1.901	0.679	0.627	0.670	0.265	0.443	nan	0.665	nan	0.820	0.299	0.277	0.224	0.230	0.133	0.518	2.314	nan	0.100	0.201	0.024	0.132	0.113	2.961	0.030	0.768	0.057	0.026
8160	chr9	75584989	75615443	+	0	NA	Intergenic	Intergenic	-31983	NM_000689	216	Hs.76392	NM_000689	ENSG00000165092	ALDH1A1	ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1	aldehyde dehydrogenase 1 family member A1	protein-coding	nan	nan	nan	0.087	0.284	0.156	0.130	0.164	0.058	0.088	0.123	0.035	0.221	2.563	0.091	0.473	0.262	2.461	nan	0.320	nan	0.298	0.153	0.388	0.389	0.086	0.145	0.260	0.322	0.200	0.063	0.530	0.472	0.206	0.270	0.178	0.310	0.626	0.519	0.009	0.029	0.040	0.036	0.130	0.035		0.030	0.351	0.053
3553	chr17	73176696	73180898	+	0	NA	intron (NM_001005849, intron 1 of 2)	CpG	301	NM_001005849	6613	Hs.380973	NM_006937	ENSG00000188612	SUMO2	HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A	small ubiquitin-like modifier 2	protein-coding	6.514	4.871	4.930	7.171	8.290	4.692	5.003	5.004	0.577	3.785	1.778	7.035	12.683	5.106	0.134	9.282	8.201	8.410	11.999	8.334	9.294	8.425	5.437	8.509	9.558	nan	6.946	8.838	12.487	14.073	14.417	6.146	10.406	6.174	7.819	9.082	6.552	nan	1.985	3.776	4.720	1.765	4.074	5.003	7.035	1.331	3.622	1.919	3.048
1933	chr12	49579223	49629702	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-17247	NM_001303117	84790	Hs.652390	NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding	2.386	nan	1.186	1.653	4.863	2.801	3.837	0.720	0.333	2.200	1.619	4.150	2.431	0.346	0.111	4.461	5.880	0.910	1.249	7.949	6.618	4.517	2.319	1.944	1.935	3.892	4.502	2.508	3.875	2.456	2.172	1.258	2.172	4.592	3.927	2.218	5.213	5.170	2.620	5.218	6.227	1.039	0.934	3.837	4.150	0.774	0.777	1.662	0.852
4892	chr20	23071885	23109508	+	0	NA	Intergenic	Intergenic	22577	NR_034149	200261	Hs.352228	NM_182535	ENSG00000233746	LINC00656	-	long intergenic non-protein coding RNA 656	ncRNA	0.462	0.741	nan	0.535	0.374	0.179	0.372	0.117	0.068	0.243	0.134	0.878	0.546	0.026	0.067	0.363	0.300	0.158	0.265	0.740	0.615	2.012	0.523	0.150	0.169	0.280	0.530	5.377	3.598	0.417	0.235	0.196	0.253	0.267	0.211	0.089	0.142	2.268	1.274	0.311	0.135	0.051	0.017	0.372	0.878	0.107	0.736	0.050	0.040
790	chr1	203329632	203339042	+	0	NA	Intergenic	L1ME3A|LINE|L1	-13780	NR_103757	2331	Hs.519168	NM_002023	ENSG00000122176	FMOD	FM|SLRR2E	fibromodulin	protein-coding	1.382	1.168	2.323	1.371	1.248	0.482	2.351	0.200	0.137	3.021	1.370	5.748	1.337	0.035	0.073	0.573	1.385	0.330	0.509	5.613	5.749	5.060	1.735	nan	nan	1.041	1.574	1.376	1.118	0.482	0.492	0.447	0.594	1.350	0.879	0.414	1.007	4.773	2.171	0.190	1.100	0.302	0.158	2.351	5.748	1.015	0.379	0.085	0.302
2022	chr12	71832208	71853721	+	0	NA	intron (NM_003667, intron 1 of 17)	intron (NM_003667, intron 1 of 17)	9414	NM_001277226	8549	Hs.658889	NM_003667	ENSG00000139292	LGR5	FEX|GPR49|GPR67|GRP49|HG38	leucine rich repeat containing G protein-coupled receptor 5	protein-coding	nan	0.911	0.716	0.197	0.291	0.174	0.451	1.884	0.159	0.868	0.893	2.660	1.884	0.050	0.079	0.217	0.117	0.173	0.320	2.026	1.864	0.232	0.112	0.434	0.461	0.536	0.906	nan	0.547	0.760	0.887	0.152	0.405	1.336	1.779	0.242	0.357	nan	1.795	0.015	0.497	0.390	0.063	0.451	2.660	0.032	0.218	0.066	0.149
1122	chr10	62621028	62626246	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	80396	NM_001242359	9886	Hs.737374	NM_014836	ENSG00000072422	RHOBTB1	-	Rho related BTB domain containing 1	protein-coding	0.598	nan	0.551	0.034	0.305	0.154	0.024	0.252	0.125	0.090	0.135	0.091	0.178	0.021	0.115	0.965	1.140	9.993	1.767	0.251	0.223	0.293	0.166	1.458	1.772	0.203	0.429	0.209	0.285	0.221	0.064	1.703	2.973	0.041	0.048	0.250	nan	0.333	0.350	0.021	0.089	0.017	0.031	0.024	0.091	0.041	0.020	2.999	0.024
3551	chr17	73118910	73128837	+	0	NA	intron (NM_024585, intron 2 of 2)	AluJb|SINE|Alu	4017	NM_001252377	30833	Hs.67201	NM_014595	ENSG00000125458	NT5C	DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1	5', 3'-nucleotidase, cytosolic	protein-coding	2.646	2.317	1.776	3.399	2.654	1.329	2.081	1.326	0.277	0.899	0.464	1.978	4.799	2.014	0.124	2.669	3.245	1.730	3.419	2.444	2.188	3.804	1.213	1.713	1.638	nan	2.651	4.850	6.110	4.874	5.625	1.303	2.342	1.576	2.274	1.850	2.975	nan	0.751	0.851	1.548	0.327	0.961	2.081	1.978	1.368	4.761	0.666	1.135
5474	chr3	114264017	114308735	+	0	NA	intron (NR_121662, intron 3 of 6)	intron (NR_121662, intron 3 of 6)	56677	NM_001164347	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding	1.001	nan	0.692	0.102	0.411	0.218	0.115	0.567	0.158	0.108	0.119	0.190	0.221	0.039	0.088	0.810	0.474	4.705	4.566	0.328	nan	0.633	0.280	0.246	0.292	nan	1.025	0.211	0.230	0.744	0.304	0.242	0.305	0.065	0.097	0.324	0.559	0.508	0.471	0.051	0.093	0.013	0.055	0.115	0.190	0.037	0.027	0.106	0.123
6100	chr4	183047252	183219637	+	0	NA	Intergenic	Intergenic	-31140	NM_001080477	55714	Hs.130438	NM_001080477	ENSG00000218336	TENM3	MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3	teneurin transmembrane protein 3	protein-coding	nan	0.717	nan	0.031	0.383	0.187	0.196	0.064	0.084	0.111	0.101	0.143	0.180	7.678	0.181	0.163	0.089	0.460	0.741	0.454	0.462	1.177	0.464	0.982	0.953	0.073	0.138	0.898	0.861	0.538	0.441	0.092	0.160	0.425	0.449	0.088	0.138	0.496	0.381	0.349	0.211	0.104	0.121	0.196	0.143	0.024	0.002	0.038	0.032
4643	chr2	189148857	189171903	+	0	NA	intron (NR_045563, intron 2 of 12)	intron (NR_045563, intron 2 of 12)	-1839	NR_030287	693146		NR_030287	ENSG00000207951	MIR561	MIRN561|hsa-mir-561|mir-561	microRNA 561	ncRNA	0.817	0.926	2.171	0.972	0.214	0.125	0.177	1.303	0.266	0.838	0.703	0.031	5.426	1.457	0.099	0.303	0.270	1.465	4.337	0.126	0.186	3.051	0.940	0.576	0.535	nan	1.340	0.821	1.122	0.804	0.873	0.179	0.337	2.097	2.915	0.304	nan	0.591	0.372	0.024	0.077	0.337	0.069	0.177	0.031	0.034	1.342	0.034	0.017
1053	chr10	17155587	17189922	+	0	NA	promoter-TSS (NM_001081)	promoter-TSS (NM_001081)	-938	NM_001081	8029	Hs.166206	NM_001081	ENSG00000107611	CUBN	IFCR|MGA1|gp280	cubilin	protein-coding	nan	0.637	0.579	0.104	0.198	0.126	0.030	0.348	0.122	0.114	0.114	0.059	0.146	0.051	0.093	0.673	0.643	2.932	5.095	0.224	0.187	0.250	0.135	0.191	0.174	0.622	0.738	0.295	0.344	0.206	0.088	0.224	0.384	0.042	0.056	0.133	0.220	0.373	0.295	0.023	0.044	0.014	0.030	0.030	0.059	0.006	0.036	0.248	0.048
462	chr1	116378825	116386139	+	0	NA	intron (NM_001111061, intron 1 of 1)	intron (NM_001111061, intron 1 of 1)	851	NM_001111061	4808	Hs.46296	NM_005599	ENSG00000177551	NHLH2	HEN2|NSCL2|bHLHa34	nescient helix-loop-helix 2	protein-coding	nan	1.185	5.554	0.175	0.183	0.065	0.210	0.082	0.087	0.063	0.145	0.115	2.225	0.060	0.135	0.455	0.404	0.355	0.573	6.260	nan	0.078	0.041	1.189	1.288	1.434	2.093	1.621	2.611	11.549	16.122	5.664	7.620	4.112	3.171	0.111	0.239	2.690	1.436	0.045	0.108	0.862	4.867	0.210	0.115	1.568	0.041	3.684	0.017
414	chr1	98486521	98525093	+	0	NA	intron (NR_046105, intron 3 of 4)	intron (NR_046105, intron 3 of 4)	5100	NR_039604	100616452		NR_039604	ENSG00000225206	MIR2682	mir-2682	microRNA 2682	ncRNA	nan	nan	0.774	0.084	2.283	1.258	0.614	1.821	0.167	0.330	0.329	0.059	0.952	1.488	0.122	0.342	0.251	0.245	0.325	0.617	nan	0.308	0.138	0.211	0.219	6.468	nan	0.443	0.504	nan	1.170	0.202	0.280	0.374	0.321	0.307	0.566	0.773	0.504	0.038	0.064	0.143	0.082	0.614	0.059	0.217	0.195	0.033	0.061
8074	chr9	17517289	17534346	+	0	NA	Intergenic	Intergenic	-53135	NM_003026	6456	Hs.75149	NM_003026	ENSG00000107295	SH3GL2	CNSA2|EEN-B1|SH3D2A|SH3P4	SH3 domain containing GRB2 like 2, endophilin A1	protein-coding	nan	nan	1.159	0.282	0.499	0.301	0.255	0.087	0.085	0.249	0.288	0.217	0.449	0.031	0.075	0.172	0.145	0.352	0.367	0.584	0.717	7.114	2.647	0.116	0.122	0.540	0.937	0.352	0.393	0.814	0.607	0.190	0.219	2.083	1.268	0.222	0.607	1.824	1.205	0.036	0.068	0.369	0.078	0.255	0.217	0.046	0.089	0.052	0.145
6359	chr5	90672933	90682794	+	0	NA	intron (NR_027435, intron 1 of 2)	intron (NR_027435, intron 1 of 2)	1327	NM_001329672	57561	Hs.24684	NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding	nan	8.856	4.448	4.805	11.158	5.673	3.953	2.297	0.293	2.133	1.113		15.910	4.883	0.155	6.022	7.626	8.963	11.938	13.573	8.053	7.777	3.779	10.012	10.045	7.142	7.810	7.432	15.276	14.883	20.169	3.286	6.092	14.879	12.489	10.213	nan	2.751	1.558	3.599	6.297	2.302	2.832	3.953		0.749	2.787	3.294	2.605
7832	chr8	101463675	101478301	+	0	NA	Intergenic	Intergenic	75997	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA	2.373	nan	nan	1.356	3.789	2.062	0.652	0.243	0.164	0.781	0.275	2.903	3.241	0.049	0.086	0.375	0.313	0.367	0.636	2.610	3.223	nan	1.030	0.458	0.454	0.399	nan	3.311	nan	nan	0.399	0.299	0.373	1.605	1.418	0.313	nan	2.280	1.135	0.503	0.654	0.266	0.316	0.652	2.903	0.027	1.584	0.074	0.215
8154	chr9	73020399	73039181	+	0	NA	promoter-TSS (NM_001206)	promoter-TSS (NM_001206)	-217	NM_001206	687	Hs.150557	NM_001206	ENSG00000119138	KLF9	BTEB|BTEB1	Kruppel like factor 9	protein-coding	nan	nan	nan	4.278	5.905	3.039	2.839	3.066	0.351	3.019	1.455	6.868	6.267	3.318	0.132	2.447	3.087	5.681	nan	4.985	nan	2.353	1.250	8.164	8.435	2.678	3.274	4.721	7.293	3.480	4.611	2.806	3.784	5.916	5.658	3.038	4.673	1.549	1.059	1.630	3.800	1.982	2.467	2.839	6.868	1.253	3.069	2.567	1.879
4385	chr2	64833158	64882266	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	23266	NR_034023	339807	Hs.434736	NR_034023	ENSG00000233694	LOC339807	-	uncharacterized LOC339807	ncRNA	2.054	0.988	nan	0.857	0.591	0.202	1.169	0.736	0.095	0.472	0.341	0.458	2.142	0.994	0.136	0.633	0.767	1.029	1.828	1.083	0.996	nan	0.575	1.380	1.361	0.570	0.802	2.561	3.410	1.560	1.542	0.578	1.172	0.714	0.748	2.048	3.869	1.761	1.300	0.868	2.776	0.165	0.689	1.169	0.458	0.450	0.690	0.614	0.811
8021	chr9	3489693	3532568	+	0	NA	intron (NM_134428, intron 1 of 17)	intron (NM_134428, intron 1 of 17)	14871	NM_001282116	5991	Hs.136829	NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding	1.719	3.461	2.370	1.197	3.208	1.634	1.631	1.031	0.108	2.388	1.281	2.055	2.960	1.576	0.109	1.958	1.719	5.347	7.224	2.945	2.906	5.643	3.280	3.626	3.787	5.271	6.041	2.376	4.056	1.681	1.598	1.308	2.121	6.207	6.868	1.363	nan	2.672	1.692	1.573	1.297	1.326	1.249	1.631	2.055	0.371	0.883	1.060	0.202
6656	chr6	21100891	21118284	+	0	NA	intron (NM_017774, intron 13 of 15)	intron (NM_017774, intron 13 of 15)	402536	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA	1.254	1.447	nan	1.491	1.781	0.866	0.548	0.534	0.120	0.675	0.607	1.984	nan	0.169	0.085	0.481	0.359	0.623	nan	0.741	1.203	nan	0.428	0.682	0.734	1.031	1.349	1.587	1.230	0.616	0.346	0.175	0.356	1.482	2.234	0.379	0.972	2.427	0.995	1.135	0.646	0.490	0.087	0.548	1.984	0.039	0.192	0.102	0.235
7400	chr7	97705976	97716712	+	0	NA	Intergenic	AluSz|SINE|Alu	-24853	NM_014916	22853	Hs.444179	NM_014916	ENSG00000164715	LMTK2	AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK	lemur tyrosine kinase 2	protein-coding	nan	0.526	nan	0.227	0.329	0.074	0.738	0.083	0.178	0.922	0.636	0.567	1.448	0.079	0.118	0.421	0.535	0.241	0.421	0.667	0.764	1.660	0.406	0.364	0.369	0.186	0.303	0.898	0.646	0.343	0.246	0.244	0.310	0.410	0.334	0.162	nan	4.258	2.405	0.145	0.157	0.071	0.239	0.738	0.567	0.232	0.136	0.055	0.023
5932	chr4	72457164	72471813	+	0	NA	Intergenic	Intergenic	185591	NM_000583	2638	Hs.418497	NM_000583	ENSG00000145321	GC	DBP|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDBG|VDBP	GC, vitamin D binding protein	protein-coding	0.638	0.513	0.918	1.696	0.280	0.255	0.167	0.148	0.044	0.107	0.084	0.929	2.702	0.037	0.085	0.463	0.234	0.235	0.380	1.625	2.325	0.122	0.108	0.212	0.212	3.739	4.272	3.112	3.647	0.536	0.305	0.098	0.204	0.170	0.196	0.131	0.140	0.133	0.169	0.323	0.689	0.019	1.024	0.167	0.929	0.100	0.500	0.047	0.051
5709	chr3	178422280	178435669	+	0	NA	intron (NM_001278911, intron 1 of 4)	MIR|SINE|MIR	149219	NR_126560	104797538	Hs.478363	NR_126560		KCNMB2-AS1	-	KCNMB2 antisense RNA 1	ncRNA	2.259	1.483	1.413	0.567	6.515	3.008	0.163	0.562	0.216	1.741	0.765	0.849	0.913	0.040	0.096	0.371	0.388	0.249	0.390	0.743	0.809	1.447	0.789	0.516	0.581	0.849	1.396	2.811	4.178	0.965	0.458	0.261	0.386	1.183	1.453	0.453	1.005	0.797	0.758	0.033	0.236	0.347	0.732	0.163	0.849	0.516	0.114	0.059	0.287
3673	chr18	18513800	18520538	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	174643	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding	30.613	31.476	30.070	8.238	18.120	10.092	15.348	10.458	24.952	9.778	14.124	8.671	25.725	5.280	14.182	27.384	15.784	20.255	25.680	24.690	28.700	13.123	11.247	17.310	16.964	15.468	18.075	15.504	13.374	29.254	11.595	15.132	21.677	9.721	14.680	18.130	20.890	13.850	18.155	3.017	5.991	3.648	4.143	15.348	8.671	2.268	3.328	4.734	5.278
5665	chr3	172459419	172471047	+	0	NA	Intergenic	L2b|LINE|L2	-3242	NM_001258316	1894	Hs.518299	NM_018098	ENSG00000114346	ECT2	ARHGEF31	epithelial cell transforming 2	protein-coding	2.408	2.003	1.486	1.802	2.126	1.184	0.678	2.004	0.387	1.136	0.777	1.490	2.208	2.044	0.110	1.382	1.412	2.335	3.586	2.707	2.586	7.514	3.237	4.301	4.336	1.828	2.325	2.296	2.857	2.658	2.459	0.558	1.229	2.515	3.032	2.514	2.543	1.243	0.775	1.034	0.713	0.776	0.750	0.678	1.490	0.309	0.688	0.997	1.072
7604	chr8	17462322	17473252	+	0	NA	intron (NM_006207, intron 3 of 6)	intron (NM_006207, intron 3 of 6)	33845	NM_006207	5157	Hs.458573	NM_006207	ENSG00000104213	PDGFRL	PDGRL|PRLTS	platelet derived growth factor receptor like	protein-coding	0.901	1.084	nan	1.012	2.194	0.987	0.284	2.146	0.575	0.527	0.334	2.759	1.360	0.059	0.083	0.399	0.370	0.942	1.559	1.243	nan	2.655	0.455	0.368	0.484	0.259	0.470	2.924	4.894	0.580	0.295	0.203	0.260	0.886	1.221	0.519	1.058	3.445	1.815	0.167	0.097	0.209	0.015	0.284	2.759	0.036	7.157	0.111	0.226
4581	chr2	166418933	166435318	+	0	NA	intron (NM_001172173, intron 3 of 6)	intron (NM_001172173, intron 3 of 6)	-1721	NM_024969	80034	Hs.470479	NM_024969	ENSG00000178662	CSRNP3	FAM130A2|PPP1R73|TAIP-2|TAIP2	cysteine and serine rich nuclear protein 3	protein-coding	0.995	1.173	nan	1.275	1.255	0.606	1.686	0.344	0.039	1.128	0.702	0.622	2.838	0.041	0.066	2.397	2.893	2.017	2.325	1.014	0.995	2.991	1.644	1.682	1.590	4.145	4.306	1.261	1.292	2.963	2.368	1.439	2.602	0.054	0.012	1.375	2.025	1.528	0.717	0.044	1.688	0.006	0.341	1.686	0.622	0.279	0.390	1.865	0.218
7935	chr8	129548836	129571338	+	0	NA	intron (NR_121672, intron 2 of 7)	intron (NR_121672, intron 2 of 7)	16838	NR_121673	101927774	Hs.628730	NR_121672		LINC00824	LINC01263	long intergenic non-protein coding RNA 824	ncRNA	nan	nan	nan	2.792	0.959	0.581	0.071	0.325	0.129	0.174	0.104	0.189	nan	0.020	0.082	0.365	0.236	0.293	0.351	1.226	1.260	7.005	1.973	nan	nan	0.349	0.577	11.281	7.944	0.308	0.123	0.148	0.250	0.911	2.392	0.174	0.299	0.493	0.442	0.066	0.399	0.090	0.077	0.071	0.189	0.056	3.331	0.061	0.071
293	chr1	46917061	46933279	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-9794	NR_121680	101929651	Hs.638707	NR_121680	ENSG00000224863	LINC01398	-	long intergenic non-protein coding RNA 1398	ncRNA	nan	0.859	nan	0.142	0.712	0.268	0.419	0.138	0.089	0.385	0.187	1.410	0.857	0.227	0.113	0.295	0.454	0.312	0.341	4.206	4.457	0.551	0.186	0.453	0.529	0.207	nan	nan	1.156	0.867	0.829	0.352	nan	0.161	0.152	0.489	1.254	0.471	0.502	0.155	0.197	0.046	0.109	0.419	1.410	0.085	0.113	0.066	0.072
4219	chr2	12487036	12497039	+	0	NA	intron (NR_110196, intron 4 of 5)	intron (NR_110196, intron 4 of 5)	152781	NR_037452	100500884		NR_037452	ENSG00000264089	MIR3681	-	microRNA 3681	ncRNA	0.762	0.854	0.864	2.127	0.278	0.218	0.127	0.154	0.097	0.451	0.352	3.142	0.835	0.021	0.135	0.805	0.637	0.190	0.248	1.317	1.253	0.139	0.060	0.121	0.114	0.222	0.524	9.595	nan	0.427	0.127	0.064	0.119	0.084	0.049	0.216	nan	2.973	1.621	0.244	1.394		0.079	0.127	3.142	0.069	4.742	0.010	0.086
1272	chr11	835841	847097	+	0	NA	intron (NM_021128, intron 1 of 1)	AluJb|SINE|Alu	1060	NM_021128	5441	Hs.441072	NM_021128	ENSG00000177700	POLR2L	RBP10|RPABC5|RPB10|RPB10beta|RPB7.6|hRPB7.6	RNA polymerase II subunit L	protein-coding	1.887	1.900	6.539	0.733	1.206	0.480	1.374	1.939	0.314	0.598	0.251	2.250	1.920	2.006	0.074	2.977	3.951	2.187	3.453	3.296	3.660	1.653	1.222	2.515	2.562	1.027	2.224	1.380	2.035	2.126	1.936	2.468	3.565	1.370	1.619	1.154	1.266	1.136	0.587	0.522	1.788	0.341	0.326	1.374	2.250	0.252	0.629	0.446	0.384
2888	chr15	58530669	58563410	+	0	NA	Intergenic	Intergenic	116644	NM_001320635	366	Hs.104624	NM_020980	ENSG00000103569	AQP9	AQP-9|HsT17287|SSC1|T17287	aquaporin 9	protein-coding	0.724	1.834	2.649	1.734	4.634	2.291	0.212	0.161	0.079	0.709	0.223	3.389	3.018	0.030	0.085	0.455	0.546	0.291	0.603	3.734	3.377	0.365	0.138	0.565	0.508	0.254	0.433	3.459	3.384	1.691	1.678	1.201	1.663	1.083	1.338	0.320	0.765	0.809	0.629	1.666	1.878	0.209	1.298	0.212	3.389	0.077	0.142	1.085	0.169
3818	chr18	53013547	53025526	+	0	NA	intron (NM_001330604, intron 6 of 19)	intron (NM_001330604, intron 6 of 19)	-30446	NM_001243234	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding	nan	0.857	0.868	0.096	0.652	0.227	0.182	0.181	0.058	0.117	0.199	0.210	0.272	0.296	0.062	0.476	0.393	5.349	6.396	0.476	0.758	0.768	0.426	0.648	0.569	1.038	1.142	0.263	0.355	0.720	0.560	0.212	0.276	0.378	0.513	0.264	0.545	nan	1.247	0.029	0.142	0.087	0.080	0.182	0.210	0.048	0.106	0.058	0.132
5614	chr3	155579586	155595849	+	0	NA	promoter-TSS (NM_003875)	promoter-TSS (NM_003875)	-608	NM_003875	8833	Hs.591314	NM_003875	ENSG00000163655	GMPS	-	guanine monophosphate synthase	protein-coding	nan	2.177	2.481	2.086	2.257	1.190	1.157	1.583	0.397	1.386	0.728	1.532	2.187	0.928	0.059	1.631	1.627	2.151	2.904	2.785	2.589	4.736	2.255	3.182	3.150	2.169	nan	2.492	3.629	4.529	4.556	1.221	2.449	1.200	1.015	2.519	2.963	1.377	0.768	0.769	1.178	0.357	1.268	1.157	1.532	0.410	0.642	0.515	0.758
469	chr1	117361460	117376904	+	0	NA	Intergenic	Intergenic	72130	NM_001328609	914	Hs.523500	NM_001767	ENSG00000116824	CD2	LFA-2|SRBC|T11	CD2 molecule	protein-coding	nan	1.222	1.653	0.539	0.849	0.407	2.091	0.348	0.199	0.549	0.268	2.506	2.732	0.028	0.105	0.735	1.866	1.209	2.689	5.873	nan	0.798	0.256	0.229	0.295	3.339	3.728	1.794	1.251	2.651	2.790	0.673	1.302	1.716	2.377	0.776	1.993	2.133	1.267	0.113	1.160	0.393	0.092	2.091	2.506	1.453	2.814	0.786	0.481
6350	chr5	87774727	87814573	+	0	NA	Intergenic	LTR16D2|LTR|ERVL	-59743	NR_105021	102546226	Hs.535810	NR_105021	ENSG00000250156	LINC02060	-	long intergenic non-protein coding RNA 2060	ncRNA	0.844	1.249	0.832	0.054	0.209	0.108	0.053	0.438	0.103	0.150	0.148	0.030	0.358	0.047	0.133	0.201	0.168	0.331	0.404	0.137	0.177	0.107	0.051	0.110	0.132	1.052	1.259	0.243	0.242	0.517	0.314	0.097	0.192	5.546	7.563	0.218	nan	0.449	0.340	0.018	0.171	2.299	0.198	0.053	0.030	0.029	0.119	0.032	0.174
1566	chr11	88068495	88072089	+	0	NA	intron (NM_001114173, intron 1 of 3)	intron (NM_001114173, intron 1 of 3)	663	NM_001114173	1075	Hs.128065	NM_001814	ENSG00000109861	CTSC	CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS	cathepsin C	protein-coding	2.098	1.220	2.093	1.741	0.420	0.489	0.139	1.472	0.089	2.009	1.084	0.499	2.929	0.663	0.162	12.300	16.501	1.310	1.786	0.208	0.292	0.266	0.054	13.740	14.449	4.669	5.501	5.742	7.645	2.829	3.565	3.044	6.607	9.437	7.468	4.229	4.924	3.766	2.021	0.138	0.424	1.705	1.189	0.139	0.499	0.264	2.211	2.201	2.066
3737	chr18	34970776	34985376	+	0	NA	intron (NM_001025087, intron 2 of 12)	intron (NM_001025087, intron 2 of 12)	68391	NR_132967	106635546		NR_132967		SNORA111	-	small nucleolar RNA, H/ACA box 111	snoRNA	nan	0.983	0.808	0.646	0.598	0.308	1.016	0.061		0.493	0.357	0.726	1.024	0.059	0.048	1.172	2.344	0.185	0.458	1.369	1.304	2.462	1.172	0.139	0.148	1.296	1.667	nan	1.904	2.479	2.918	0.244	0.371	2.160	1.614	1.017	0.895	3.483	2.383	1.922	0.328	0.444	0.390	1.016	0.726	0.485	0.093	0.054	0.239
40	chr1	5368043	5374313	+	0	NA	Intergenic	Intergenic	-252953	NR_039612	100616489		NR_039612	ENSG00000264341	MIR4417	mir-4417	microRNA 4417	ncRNA	0.637	nan	0.613	3.041	0.164	0.200	0.143	0.073	0.088	0.302	0.063	0.152	3.697	0.103	0.089	0.115	0.128	0.083	0.061	1.186	1.255	0.084	0.040	0.215	0.184	0.151	nan	nan	4.255	nan	1.314	0.126	0.148	0.034	0.089	0.680	1.307	0.312	0.404	8.941	0.869	0.014	0.037	0.143	0.152		0.016	0.016	0.255
1115	chr10	50802172	50823208	+	0	NA	Intergenic	L1ME3C|LINE|L1	-4451	NM_020984	1103	Hs.302002	NM_020549	ENSG00000070748	CHAT	CHOACTASE|CMS1A|CMS1A2|CMS6	choline O-acetyltransferase	protein-coding	0.758	nan	0.439	0.130	0.323	0.129	0.146	0.068	0.038	0.052	0.069	0.097	3.930	0.036	0.062	1.481	1.994	0.182	0.177	0.393	0.367	0.428	0.136	0.823	0.790	0.444	0.752	0.205	0.316	0.225	0.123	0.482	0.504	0.066	0.089	0.301	0.535	0.355	0.420	3.197	0.017	0.023	0.175	0.146	0.097	0.097	0.112	0.094	0.088
5626	chr3	159569856	159585334	+	0	NA	intron (NM_001197109, intron 1 of 6)	MER5A|DNA|hAT-Charlie	19945	NM_001197109	29970	Hs.134665	NM_014575	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding	nan	1.169	0.939	0.198	0.447	0.197	0.752	2.368	0.093	0.296	0.207	0.730	0.415	0.734	0.090	0.962	1.633	0.575	0.946	1.088	1.356	0.858	0.437	0.177	0.157	2.937	nan	0.983	0.753	2.372	2.076	0.455	0.980	1.137	1.267	0.532	1.667	1.317	0.909	0.622	0.116	0.271	2.001	0.752	0.730	0.440	0.214	0.517	0.248
4421	chr2	86260868	86268303	+	0	NA	intron (NM_015425, intron 27 of 33)	intron (NM_015425, intron 27 of 33)	-13594	NR_026984	90784	Hs.594051	NR_026984		LOC90784	-	uncharacterized LOC90784	ncRNA	nan	0.673	nan	3.034	3.803	1.653	1.720	1.022	0.152	1.892	0.908	3.444	7.449	0.132	0.121	0.272	0.807	0.328	0.677	8.984	9.555	2.761	1.006	0.572	0.630	1.527	2.017	6.650	6.240	3.560	3.932	0.416	0.672	1.510	2.092	0.218	0.527	1.856	0.992	3.746	1.437	0.383	2.093	1.720	3.444	1.868	1.046	0.398	0.132
7124	chr7	1542735	1554178	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-4438	NM_001080453	26173	Hs.532188	NM_001080453	ENSG00000164880	INTS1	INT1|NET28	integrator complex subunit 1	protein-coding	2.077	2.598	3.720	1.311	4.101	2.177	1.618	0.499	0.295	1.022	0.819	4.846	nan	1.862	0.239	1.875	2.103	1.096	nan	3.779	3.412	nan	0.696	1.471	1.584	0.882	1.431	nan	5.101	1.336	1.175	1.101	1.948	2.125	1.948	1.127	1.750	1.917	0.857	0.885	2.199	0.548	1.018	1.618	4.846	1.452	3.885	0.942	0.627
3529	chr17	71293941	71309513	+	0	NA	intron (NM_012121, intron 1 of 1)	intron (NM_012121, intron 1 of 1)	6416	NM_012121	23580	Hs.3903	NM_012121	ENSG00000179604	CDC42EP4	BORG4|CEP4|KAIA1777	CDC42 effector protein 4	protein-coding	2.359	2.337	2.538	1.927	1.569	0.795	1.209	2.997	0.950	1.271	0.570	1.577	4.112	1.407	0.151	2.369	3.295	4.298	6.708	2.914	2.565	1.994	0.775	2.854	2.743	nan	0.990	2.744	3.961	2.826	2.080	1.478	2.888	1.747	2.214	1.419	2.473	nan	0.734	0.550	3.676	0.713	1.569	1.209	1.577	0.288	1.159	1.228	0.804
4406	chr2	74959852	74974816	+	0	NA	Intergenic	MIRb|SINE|MIR	85979	NR_073398	10505	Hs.25887	NM_004263	ENSG00000135622	SEMA4F	M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M	ssemaphorin 4F	protein-coding	nan	nan	1.144	0.315	0.765	0.310	1.796	0.241	0.097	0.219	0.183	0.152	1.896	0.102	0.111	0.295	0.278	0.246	0.553	0.800	0.791	5.368	1.296	0.306	0.320	0.679	0.973	0.418	0.436	1.380	1.455	0.197	0.196	0.127	0.298	1.537	5.603	nan	0.834	1.922	0.142	0.051	0.168	1.796	0.152	0.161	0.122	0.033	3.187
4303	chr2	40633512	40652377	+	0	NA	intron (NM_021097, intron 1 of 9)	AluSx|SINE|Alu	14500	NM_001112801	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding	1.160	nan	1.130	0.103	0.379	0.196	0.112	0.169	0.060	0.125	0.160	0.166	0.292	0.063	0.120	0.332	0.250	0.179	0.292	nan	0.401	0.446	0.199	0.284	0.290	0.761	0.926	0.483	0.418	0.455	0.239	0.135	0.189	0.078	0.117	2.252	6.907	nan	0.452	0.041	0.824	0.020	0.055	0.112	0.166	0.025	0.011	0.037	1.583
2293	chr13	47192848	47207964	+	0	NA	intron (NM_001164211, intron 1 of 19)	intron (NM_001164211, intron 1 of 19)	73110	NM_015116	23143	Hs.507971	NM_015116	ENSG00000136141	LRCH1	CHDC1|NP81	leucine rich repeats and calponin homology domain containing 1	protein-coding	1.269	1.233	1.021	0.087	0.198	0.222	0.025	0.323	0.049	0.228	0.255	0.055	0.265	0.086	0.078	0.574	0.428	0.262	0.350	0.362	0.465	0.695	0.305	0.198	0.190	2.033	2.519	0.125	0.163	3.666	2.851	0.315	0.601	0.274	0.242	3.133	7.663	0.695	0.536	0.167	0.077	0.057	0.063	0.025	0.055	0.367	0.047	0.301	1.517
543	chr1	151912967	151920899	+	0	NA	Intergenic	MIR|SINE|MIR	-34572	NM_053055	117145	Hs.164070	NM_053055	ENSG00000159445	THEM4	CTMP	thioesterase superfamily member 4	protein-coding	nan	7.512	1.200	0.133	1.718	1.029	2.730	1.572	0.261	0.691	0.186	0.634	0.635	0.108	0.118	0.311	0.181	0.522	1.458	0.362	nan	0.218	0.114	0.279	0.270	0.425	0.909	0.211	0.632	0.345	0.155	0.422	0.471	0.727	1.363	0.517	0.749	0.569	0.801	0.154	0.210	0.107	0.041	2.730	0.634	0.012	1.331	0.100	0.029
267	chr1	43735092	43752508	+	0	NA	Intergenic	AluSz|SINE|Alu	7450	NM_182517	149466	Hs.158963	NM_182517	ENSG00000253313	C1orf210	TEMP	chromosome 1 open reading frame 210	protein-coding	nan	1.176	nan	0.529	0.681	0.349	0.158	0.099	0.102	0.400	0.179	0.833	1.013	0.082	0.079	0.673	1.122	0.597	0.748	1.215	1.250	1.569	0.462	0.794	0.763	0.207	nan	nan	6.282	0.349	0.211	1.370	nan	0.209	0.175	0.229	0.326	0.779	0.571	0.834	0.581	0.027	0.127	0.158	0.833	0.113	0.060	1.277	0.093
1892	chr12	30904074	30910048	+	0	NA	promoter-TSS (NR_135046)	promoter-TSS (NR_135046)	387	NM_001206856	65981	Hs.234355	NM_023925	ENSG00000110888	CAPRIN2	C1QDC1|EEG-1|EEG1|RNG140	caprin family member 2	protein-coding	2.613	nan	2.872	4.097	1.810	1.206	0.986	0.374	0.109	1.183	0.571	1.689	5.513	1.866	0.163	1.296	1.689	1.965	2.448	4.887	4.563	5.089	1.634	2.832	2.826	1.511	2.387	2.967	3.822	1.635	1.869	0.821	1.489	11.919	11.269	1.441	2.344	2.761	1.537	1.302	1.577	3.179	1.411	0.986	1.689	0.866	4.323	0.498	0.519
8363	chrUn_gl000229	4225	9565	+	0	NA	NA	Intergenic	NA	NA									1.832	2.971	1.795	0.354	0.812	0.478	9.761	0.619	1.569	0.511	0.463	0.316	1.407	0.510	0.373	1.347	1.151	2.294	3.614	1.055	1.186	0.536	0.216	0.853	1.002	0.750	1.467	0.618	0.692	1.270	0.422	1.459	2.027	0.321	0.323	0.372	0.884	1.005	1.276	0.213	0.083	0.125	0.269	9.761	0.316	0.211	1.175	0.794	0.331
4561	chr2	160368432	160375723	+	0	NA	intron (NM_001329857, intron 2 of 36)	intron (NM_001329857, intron 2 of 36)	-99728	NR_110588	643072	Hs.632541	NR_110587		LOC643072	-	uncharacterized LOC643072	ncRNA	1.641	2.310	nan	2.480	7.683	3.772	0.621	0.812	0.068	2.238	1.528	0.943	1.446	0.090	0.055	1.011	1.406	1.823	2.691	2.070	2.940	3.667	2.779	1.729	1.794	1.231	1.276	3.142	4.934	2.771	2.005	1.305	1.653	1.369	2.894	2.871	6.165	1.973	0.973	1.285	0.755	0.079	0.098	0.621	0.943	0.092	0.319	0.870	1.586
2813	chr14	107113798	107147463	+	0	NA	Intergenic	Intergenic	37914	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA	0.791	0.536	0.516	0.076	0.246	0.166	0.087	0.095	0.118	0.074	0.131	0.128	0.309	0.035	0.113	0.856	0.975	0.066	0.115	0.250	0.373	0.373	0.174	4.593	4.655	0.153	0.287	0.258	0.280	0.422	0.122	0.398	0.771	0.066	0.122	0.156	0.193	0.041	0.075	0.039	0.166	0.017	0.030	0.087	0.128	0.043	0.018	0.472	0.033
4648	chr2	191454912	191473371	+	0	NA	Intergenic	Intergenic	-49480	NM_001321313	4664	Hs.107474	NM_005966	ENSG00000138386	NAB1	-	NGFI-A binding protein 1	protein-coding	0.877	nan	0.738	0.171	0.321	0.106	0.153	0.314	0.079	0.117	0.131	0.282	0.428	0.296	0.097	0.772	1.025	0.339	0.389	0.309	0.332	0.276	0.101	0.752	0.749	0.426	0.738	0.546	0.492	0.364	0.163	2.746	3.935	0.164	0.209	0.251	0.386	0.408	0.406	0.048	0.089	0.031	0.081	0.153	0.282	0.159	0.055	5.571	0.119
2724	chr14	89290112	89310006	+	0	NA	exon (NM_144596, exon 3 of 16)	exon (NM_144596, exon 3 of 16)	9562	NM_001288782	123016	Hs.303055	NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding	2.375	1.155	nan	1.035	0.628	0.314	0.921	0.611	0.139	0.292	0.181	0.704	1.608	0.515	0.156	1.650	1.805	0.996	1.408	1.447	1.547	2.524	1.001	1.599	1.804	1.260	1.554	1.638	2.230	6.860	5.447	0.638	0.856	1.731	1.539	2.993	5.275	nan	1.104	0.856	0.702	0.464	0.331	0.921	0.704	0.113	0.691	0.194	1.306
757	chr1	194695808	194710280	+	0	NA	Intergenic	Intergenic	1429169	NR_125789	101929184	Hs.146728	NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA	0.990	nan	0.865	0.092	0.299	0.044	0.178	0.155	0.078	0.174	0.185	0.033	0.396	0.052	0.110	0.338	0.191	0.369	0.532	0.349	0.444	0.161	0.096	0.429	0.409	5.595	nan	0.372	0.311	1.167	0.957	0.039	0.132	0.720	0.892	0.276	0.373	0.361	0.398	0.008	0.074	0.078	0.055	0.178	0.033	0.093	0.028	0.034	0.043
7899	chr8	120655896	120663529	+	0	NA	intron (NM_001330600, intron 1 of 25)	intron (NM_001330600, intron 1 of 25)	-8606	NM_006209	5168	Hs.190977	NM_006209	ENSG00000136960	ENPP2	ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	nan	nan	nan	0.133	0.188	0.149	0.114	0.227	0.108	0.062	0.044	0.047	nan	0.085	0.073	0.619	0.612	6.293	1.042	0.415	0.467	0.210	0.143	nan	nan	0.167	0.317	0.300	0.227	0.572	0.530	0.451	0.571	0.369	0.489	0.214	0.401	1.007	0.822	0.015	0.057	0.086	0.072	0.114	0.047	0.025	0.173	0.237	0.306
2577	chr14	46661912	46675163	+	0	NA	intron (NR_102702, intron 1 of 3)	intron (NR_102702, intron 1 of 3)	135175	NR_102702	100506412	Hs.207545	NR_102699	ENSG00000258700	LINC00871	-	long intergenic non-protein coding RNA 871	ncRNA	nan	0.771	nan	0.143	0.367	0.184	0.097	0.095	0.096	0.039	0.086	0.116	0.294	0.051	0.106	0.312	0.113	0.249	0.254	0.239	0.353	0.149	0.106	0.245	0.276	4.207	4.547	0.221	0.238	0.569	0.222	0.131	0.182	0.086	0.117	0.368	0.857	0.366	0.400	0.038	0.080	0.041	0.048	0.097	0.116		0.023	0.030	0.167
6210	chr5	22530530	22545841	+	0	NA	intron (NM_004061, intron 1 of 14)	intron (NM_004061, intron 1 of 14)	315546	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding	0.616	1.486	1.781	1.667	0.185	0.084	0.469	0.158	0.137	0.258	0.358	0.555	1.709	0.022	0.103	0.396	0.272	0.162	0.308	0.741	0.843	0.150	0.047	0.114	0.095	nan	5.395	1.208	1.343	0.965	0.502	0.084	0.154	0.570	1.119	0.359	0.666	nan	0.931	0.022	1.330	0.174	0.063	0.469	0.555	0.374	0.332	0.039	0.048
9	chr1	1108157	1115650	+	0	NA	intron (NM_001130045, intron 3 of 15)	intron (NM_001130045, intron 3 of 15)	2617	NM_001130045	254173	Hs.454835	NM_153254	ENSG00000162571	TTLL10	TTLL5	tubulin tyrosine ligase like 10	protein-coding	0.735	nan	1.255	2.888	1.716	0.884	0.257	0.101	0.106	0.769	0.443	2.409	2.126	0.100	0.086	0.708	1.341	0.209	0.408	13.153	10.356	0.876	0.248	1.780	1.746	0.135	nan	nan	17.265	nan	0.130	0.458	0.519	0.077	0.101	0.123	0.167	1.269	0.863	7.545	4.121	0.013	1.058	0.257	2.409		0.390	0.105	0.016
3359	chr17	30947946	30958426	+	0	NA	intron (NM_001303279, intron 20 of 21)	L2c|LINE|L2	139081	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding	nan	1.132	1.545	0.703	8.179	4.504	2.040	0.115	0.046	1.955	1.104	3.205	3.287	0.079	0.135	0.517	0.470	0.197	0.317	nan	8.310	7.355	3.402	0.301	0.253	3.506	4.217	0.906	1.177	nan	1.720	0.175	0.330	5.660	5.173	0.723	1.826	4.609	2.511	1.592	0.407	1.850	0.373	2.040	3.205	0.666	1.045	0.057	0.541
7379	chr7	94024094	94031339	+	0	NA	intron (NM_000089, intron 3 of 51)	intron (NM_000089, intron 3 of 51)	3843	NM_000089	1278	Hs.489142	NM_000089	ENSG00000164692	COL1A2	OI4	collagen type I alpha 2 chain	protein-coding	nan	0.710	nan	0.127	0.317	0.099	0.088	3.692	0.363	0.254	0.204	0.137	0.340	0.119	0.181	0.345	0.180	0.303	0.328	0.499	0.567	1.453	0.223	0.312	0.370	5.792	6.857	0.505	0.898	0.707	0.316	0.159	0.401	3.002	4.185	0.351	nan	4.468	2.025	0.008	0.074	0.785	0.092	0.088	0.137	0.066	0.106	0.041	0.104
6417	chr5	120954255	120972705	+	0	NA	Intergenic	Intergenic	-224170	NM_177478	94033	Hs.105324	NM_177478	ENSG00000181867	FTMT	MTF	ferritin mitochondrial	protein-coding	nan	0.736	0.496	0.110	0.217	0.104	0.024	0.114	0.026	0.059	0.067	0.027	0.116	0.020	0.108	0.261	0.189	6.662	nan	0.094	0.161	0.110	0.040	0.185	0.132	0.151	0.336	0.260	0.203	0.397	0.176	0.107	0.113	0.107	0.200	0.231	0.453	0.156	0.178	0.003	0.024	0.013	0.026	0.024	0.027		0.048	0.027	0.064
5423	chr3	88956261	88987500	+	0	NA	Intergenic	Intergenic	-184794	NM_005233	2042	Hs.123642	NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding	nan	0.710	0.562	0.061	0.099	0.046	0.127	0.050	0.026	0.073	0.092	0.042	0.156	0.031	0.108	0.208	0.173	0.437	0.589	0.195	0.260	0.223	0.105	0.139	0.113	7.973	9.250	0.129	0.133	1.395	1.095	0.081	0.130	0.037	0.055	0.357	0.820	0.299	0.371	0.013	0.020	0.015	0.010	0.127	0.042	0.094	0.035	0.025	0.239
3102	chr16	29814971	29821904	+	0	NA	exon (NM_001042539, exon 2 of 6)	exon (NM_001042539, exon 2 of 6)	579	NM_001276276	4150	Hs.23650	NM_002383	ENSG00000103495	MAZ	PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87	MYC associated zinc finger protein	protein-coding	5.238	3.137	nan	7.282	6.019	3.023	6.638	1.348	0.138	1.810	1.115	7.724	14.741	4.807	0.133	4.892	5.918	3.866	5.516	7.005	6.514	nan	3.718	9.260	8.503	3.176	4.073	8.512	12.041	6.672	7.670	4.088	8.497	6.174	6.322	4.830	5.808	2.790	1.285	5.939	4.760	2.623	4.149	6.638	7.724	2.670	4.519	4.547	2.441
7401	chr7	99002948	99008191	+	0	NA	intron (NM_014891, intron 1 of 5)	MIR|SINE|MIR	736	NM_014891	11333	Hs.632296	NM_014891	ENSG00000106244	PDAP1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	nan	2.367	nan	4.784	5.448	3.271	4.891	3.780	0.122	5.016	2.041	4.578	6.922	7.328	0.215	7.607	7.184	6.333	9.126	7.854	7.825	7.959	5.862	13.579	15.059	4.786	6.006	5.372	7.862	8.281	8.110	7.494	10.358	6.998	7.971	7.508	nan	7.367	3.362	3.077	4.725	0.907	2.768	4.891	4.578	1.367	1.930	2.072	1.622
5361	chr3	42209893	42226770	+	0	NA	exon (NM_001265608, exon 3 of 14)	exon (NM_001265608, exon 3 of 14)	16670	NM_014965	22906	Hs.535711	NM_014965	ENSG00000182606	TRAK1	MILT1|OIP106	trafficking kinesin protein 1	protein-coding	0.707	nan	nan	0.177	1.897	0.966	0.785	0.172	0.143	0.213	0.159	1.024	0.366	0.083	0.072	0.518	0.944	0.820	1.218	1.943	1.712	0.566	0.220	0.251	0.236	0.661	0.794	0.384	0.515	0.652	0.646	3.355	4.600	0.956	2.117	0.314	0.603	0.918	0.727	0.066	0.676	0.384	0.334	0.785	1.024	0.083	0.036	4.924	0.148
4057	chr19	39920884	39939399	+	0	NA	Intergenic	Intergenic	-3481	NM_001321111	6217	Hs.397609	NM_001020	ENSG00000105193	RPS16	S16	ribosomal protein S16	protein-coding	2.596	1.960	2.605	3.812	2.306	1.307	1.630	1.115	0.372	1.082	0.674	2.084	6.555	2.528	0.156	3.380	3.500	3.255	4.128	3.728	3.932	5.470	2.154	7.463	7.953	2.633	3.714	4.393	5.750	nan	4.235	2.294	3.628	1.928	2.191	2.886	4.055	2.703	1.388	1.187	1.725	0.278	0.446	1.630	2.084	0.578	1.968	0.848	0.887
8414	chrX	136435382	136454627	+	0	NA	Intergenic	Intergenic	-203282	NM_001330661	7547	Hs.111227	NM_003413	ENSG00000156925	ZIC3	HTX|HTX1|VACTERLX|ZNF203	Zic family member 3	protein-coding	0.455	0.890	1.122	0.032	1.027	0.482	1.264	0.024	0.033	0.238	0.115	0.012	0.229	0.011	0.037	0.251	0.114	0.160	0.288	0.119	0.142	5.856	3.035	0.121	0.117	0.117	0.200	0.106	0.095	0.293	0.121	0.073	0.095	0.024	0.058	0.131	0.245	1.361	0.772	0.023	0.046	0.005	0.016	1.264	0.012	0.025	0.047		0.032
8329	chr9	138162468	138203134	+	0	NA	Intergenic	HERVP71A-int|LTR|ERV1	-52294	NM_173520	157927	Hs.559511	NM_173520		C9orf62	-	chromosome 9 open reading frame 62	protein-coding	nan	0.939	0.663	0.070	0.467	0.233	0.087	0.079	0.081	0.085	0.073	0.115	1.487	0.037	0.055	0.333	0.526	0.098	0.165	0.391	0.430	nan	0.077	0.051	0.072	0.413	0.671	0.221	0.172	0.997	0.913	0.261	0.282	0.295	0.305	0.185	0.321	0.299	0.324	5.318	0.225	0.045	0.020	0.087	0.115	0.352	0.642	0.080	0.030
1360	chr11	30874385	30902426	+	0	NA	intron (NM_020869, intron 19 of 19)	MLT1A0|LTR|ERVL-MaLR	125828	NM_020869	100506627	Hs.530438	NM_020869	ENSG00000170959	DCDC5	-	doublecortin domain containing 5	protein-coding	0.614	0.848	nan	0.119	0.190	0.114	0.451	0.085	0.057	0.184	0.141	0.055	0.547	0.058	0.112	0.509	0.452	0.328	0.520	0.221	0.325	0.168	0.102	0.130	0.144	1.479	1.673	0.091	0.111	0.417	0.318	0.292	0.337	2.455	2.459	0.257	nan	0.750	0.622	0.057	0.117	0.846	0.423	0.451	0.055	0.055	0.013	0.159	0.162
2696	chr14	78629935	78650329	+	0	NA	intron (NM_001330195, intron 1 of 20)	intron (NM_001330195, intron 1 of 20)	3416	NR_073547	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding	1.028	0.829	0.620	0.082	0.887	0.508	0.610	0.119	0.110	0.077	0.073	0.249	5.250	0.519	0.127	0.298	0.151	0.135	0.091	0.925	1.059	0.993	0.289	0.191	0.192	0.572	0.825	0.336	nan	0.550	0.293	0.089	0.140	0.677	0.715	0.196	0.294	2.709	nan	3.224	1.385	0.197	0.910	0.610	0.249	0.058	0.029	0.024	0.061
3620	chr17	79847903	79857775	+	0	NA	intron (NM_001289419, intron 3 of 3)	AluSp|SINE|Alu	3036	NM_001002249	51529	Hs.534456	NM_016476	ENSG00000141552	ANAPC11	APC11|Apc11p|HSPC214	anaphase promoting complex subunit 11	protein-coding	3.502	2.652	3.649	2.267	3.698	2.170	5.156	1.970	0.600	1.348	0.545	2.447	4.204	1.575	0.179	2.717	2.808	2.701	3.785	3.341	3.265	2.645	1.636	4.169	4.181	nan	3.070	2.814	4.862	3.989	4.206	1.694	3.805	2.572	2.879	2.669	2.890	nan	0.735	0.893	1.301	0.670	2.179	5.156	2.447	0.851	1.867	0.702	0.855
5891	chr4	49150738	49153616	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	163518	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding	14.676	18.173	15.617	8.875	13.743	7.866	9.416	4.417	21.143	5.454	13.302	4.461	15.710	4.061	11.973	9.153	3.910	3.785	4.695	7.386	10.977	3.771	3.105	5.191	4.734	7.793	10.835	5.135	5.008	11.364	3.140	3.364	6.066	3.126	5.970	4.333	6.575	4.989	6.249	1.328	9.929	3.965	2.550	9.416	4.461	2.475	2.220	2.685	4.038
233	chr1	39567848	39574787	+	0	NA	intron (NM_012090, intron 1 of 92)	CpG	21478	NM_012090	23499	Hs.472475	NM_012090	ENSG00000127603	MACF1	ABP620|ACF7|MACF|OFC4	microtubule-actin crosslinking factor 1	protein-coding	26.554	nan	3.443	4.156	1.615	0.646	2.194	2.526	0.281	0.820	0.478	5.227	10.721	6.091	0.119	1.893	1.635	1.917	3.469	9.401	8.207	nan	0.697	2.800	2.959	3.514	4.971	27.719	32.886	nan	2.120	2.712	5.929	0.887	0.680	3.898	4.286	3.055	nan	8.548	4.234	0.137	0.643	2.194	5.227	0.467	3.562	0.954	0.980
6484	chr5	143574608	143594051	+	0	NA	intron (NM_020768, intron 2 of 3)	T-rich|Low_complexity|Low_complexity	33892	NM_020768	57528	Hs.7093	NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding	nan	1.316	0.771	1.445	0.311	0.135	0.373	0.175	0.098	1.203	0.836	0.222	6.514	0.055	0.085	0.147	0.102	0.270	0.240	1.330	1.278	4.087	0.934	0.075	0.079	3.365	4.108	0.662	1.237	0.748	0.523	0.148	0.144	4.253	4.368	0.290	0.770	1.106	0.672	0.243	0.261	1.167	0.053	0.373	0.222	0.169	0.214	0.021	0.223
6217	chr5	30094674	30102805	+	0	NA	Intergenic	L1PA7|LINE|L1	218072	NR_134264	105374704	Hs.151157	NR_134264		LOC105374704	-	uncharacterized LOC105374704	ncRNA	0.674	1.250	nan	1.677	0.210	0.079	0.128	0.201	0.119	3.568	1.192	0.114	1.149	0.054	0.158	0.432	0.228	0.172	0.204	0.277	0.400	6.627	3.084	0.137	0.103	0.278	0.386	3.282	1.917	0.886	0.314	0.147	0.218	3.705	5.332	0.268	1.322	1.361	0.728	0.035	0.108	0.633	0.030	0.128	0.114	0.012	2.693	0.037	0.063
6981	chr6	135023465	135066527	+	0	NA	Intergenic	Intergenic	-183853	NR_125855	101928304	Hs.555076	NR_125855		LOC101928304	-	uncharacterized LOC101928304	ncRNA	0.832	0.932	0.889	0.157	0.284	0.176	0.701	0.364	0.079	0.073	0.091	0.235	0.327	5.857	0.217	0.437	0.277	1.322	1.012	0.512	0.547	nan	0.296	0.253	0.262	0.305	0.486	0.330	0.318	0.603	0.293	0.157	0.247	0.126	0.145	0.473	nan	0.304	0.324	0.079	0.089	0.013	0.049	0.701	0.235	0.061	0.730	0.057	0.161
1490	chr11	68139841	68150388	+	0	NA	intron (NM_001291902, intron 5 of 22)	intron (NM_001291902, intron 5 of 22)	65037	NM_002335	4041	Hs.6347	NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP7|OPPG|OPS|OPTA1|VBCH2	LDL receptor related protein 5	protein-coding	nan	0.932	1.396	1.241	0.669	0.348	0.517	1.041	0.183	0.161	0.202	0.927	1.094	0.113	0.123	3.222	4.830	1.260	1.318	1.650	1.328	1.733	0.374	1.711	2.093	0.663	0.963	8.404	7.437	1.013	0.851	2.702	2.934	0.268	0.329	0.698	1.006	1.091	0.824	0.460	0.137	0.045	0.195	0.517	0.927	0.036	7.102	1.377	0.246
2198	chr12	124980447	125063176	+	0	NA	intron (NM_001077261, intron 1 of 47)	intron (NM_001077261, intron 1 of 47)	30199	NM_006312	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding	1.743	1.836	1.543	0.812	1.030	0.520	1.906	0.904	0.145	0.758	0.503	1.674	3.291	0.849	0.099	1.493	2.387	1.391	2.569	2.250	2.304	nan	0.662	0.819	0.814	1.691	2.487	2.674	3.673	3.928	3.764	0.717	1.183	1.137	1.270	1.484	3.196	1.683	1.053	1.355	1.439	0.373	0.515	1.906	1.674	0.964	1.216	0.562	0.693
2947	chr15	73335542	73348397	+	0	NA	Intergenic	Intergenic	-2856	NM_002499	4756	Hs.388613	NM_002499	ENSG00000067141	NEO1	IGDCC2|NGN|NTN1R2	neogenin 1	protein-coding	2.392	1.506	2.153	0.598	1.468	0.738	1.253	0.133	0.038	0.528	0.367	1.345	2.974	1.122	0.074	0.896	1.478	1.464	1.814	2.070	1.812	0.391	0.104	1.054	1.115	4.529	5.469	1.125	1.746	3.532	3.190	0.750	1.641	0.098	0.066	1.853	2.938	0.861	0.534	0.161	1.036	0.023	0.645	1.253	1.345	0.696	0.774	0.509	1.213
4199	chr2	7122946	7130506	+	0	NA	intron (NM_014746, intron 2 of 8)	intron (NM_014746, intron 2 of 8)	-67913	NR_033997	386597	Hs.559010	NR_033997	ENSG00000228203	RNF144A-AS1	-	RNF144A antisense RNA 1	ncRNA	1.007	0.877	0.965	2.674	1.772	0.792	1.208	0.177	0.129	1.900	0.863	1.663	2.789	0.081	0.063	0.320	0.418	0.481	0.713	1.950	1.784	13.326	7.647	0.232	0.255	0.708	1.100	0.857	1.293	0.462	0.271	0.304	0.689	1.467	1.473	0.332	0.761	3.549	2.003	0.278	0.442	0.339	0.094	1.208	1.663	0.050	0.231	0.106	0.232
4480	chr2	121094630	121106345	+	0	NA	Intergenic	Intergenic	-3231	NM_002193	3625	Hs.1735	NM_002193	ENSG00000163083	INHBB	-	inhibin beta B subunit	protein-coding	0.870	nan	nan	1.219	1.200	0.613	0.608	0.096	0.068	1.240	0.615	3.380	5.431	0.194	0.080	4.899	7.468	1.296	1.065	2.612	2.653	0.477	0.105	1.535	1.752	0.179	0.343	1.973	2.668	0.702	0.754	3.591	6.427	0.490	0.343	0.177	0.284	1.211	0.665	2.613	0.226	0.089	0.162	0.608	3.380	0.115	0.052	3.171	0.052
4105	chr19	46906682	46921408	+	0	NA	3' UTR (NM_032040, exon 1 of 1)	3' UTR (NM_032040, exon 1 of 1)	2874	NM_032040	83987	Hs.97876	NM_032040	ENSG00000169515	CCDC8	3M3|PPP1R20|p90	coiled-coil domain containing 8	protein-coding	1.485	0.881	0.942	0.963	1.617	0.772	2.365	0.132	0.120	0.061	0.129	1.821	0.756	5.220	0.306	0.157	0.189	1.001	1.626	1.756	1.762	0.936	0.284	0.405	0.473	0.589	0.994	2.695	4.469	1.078	0.894	0.934	1.632	0.293	0.212	1.085	2.025	0.697	0.653	0.565	3.356	0.041	0.220	2.365	1.821	0.487	0.242	0.847	0.410
2288	chr13	43181058	43195435	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	39955	NM_003701	8600	Hs.333791	NM_003701	ENSG00000120659	TNFSF11	CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf	tumor necrosis factor superfamily member 11	protein-coding	0.724	0.653	0.600	0.221	0.346	0.193	0.135	0.073	0.124	0.426	0.288	0.208	0.394	0.045	0.066	0.633	0.469	0.089	0.133	2.620	2.506	5.315	1.646	0.170	0.134	0.237	0.403	0.311	0.362	0.469	0.254	0.265	0.474	0.116	0.116	0.273	0.422	1.921	1.087	0.748	0.989	0.027	0.059	0.135	0.208	0.054	0.021	0.104	0.060
2954	chr15	75015893	75031044	+	0	NA	Intergenic	Intergenic	-5517	NM_000499	1543	Hs.72912	NM_000499	ENSG00000140465	CYP1A1	AHH|AHRR|CP11|CYP1|CYPIA1|P1-450|P450-C|P450DX	cytochrome P450 family 1 subfamily A member 1	protein-coding	0.557	0.999	0.521	0.245	0.504	0.180	0.483	0.137	0.126	0.249	0.141	0.213	7.152	0.215	0.086	0.364	0.337	0.960	2.165	0.745	0.784	1.016	0.287	0.144	0.160	0.144	0.292	0.700	0.810	0.892	0.650	0.289	0.342	0.088	0.127	0.229	0.476	0.796	0.468	0.307	0.745	0.025	0.052	0.483	0.213	0.180	0.242	0.039	0.074
4841	chr20	8131057	8143876	+	0	NA	intron (NM_182734, intron 2 of 32)	MIRb|SINE|MIR	24554	NM_015192	23236	Hs.431173	NM_015192	ENSG00000182621	PLCB1	EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B	phospholipase C beta 1	protein-coding	0.829	1.879	0.705	0.457	0.349	0.261	0.299	0.681	0.102	0.517	0.301	0.965	2.508	0.013	0.092	0.668	0.692	0.436	0.477	0.377	0.439	2.727	0.782	0.265	0.247	1.889	2.504	1.164	1.276	0.701	0.318	0.137	0.334	2.206	4.871	0.285	0.424	0.581	0.557	0.056	0.139	0.536	0.038	0.299	0.965	0.086	0.334	0.047	0.078
5120	chr21	39224335	39244235	+	0	NA	intron (NM_002240, intron 1 of 3)	intron (NM_002240, intron 1 of 3)	54456	NM_002240	3763	Hs.626242	NM_002240	ENSG00000157542	KCNJ6	BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|KPLBS|hiGIRK2	potassium voltage-gated channel subfamily J member 6	protein-coding	1.476	0.756	1.640	0.145	0.222	0.210	0.077	0.064	0.068	0.110	0.058	0.433	0.342	0.071	0.069	0.557	0.644	0.121	0.178	1.061	1.295	0.113	0.042	0.140	0.119	3.086	3.705	0.527	0.505	4.427	4.074	0.209	0.288	0.141	0.144	0.825	2.355	nan	0.792	0.034	0.085	0.070	0.139	0.077	0.433	0.962	0.189	0.080	1.267
842	chr1	211430352	211434997	+	0	NA	promoter-TSS (NM_001136224)	promoter-TSS (NM_001136224)	-34	NM_001136224	55758	Hs.356399	NM_018254	ENSG00000117625	RCOR3	-	REST corepressor 3	protein-coding	10.177	7.712	9.305	5.264	10.562	6.177	9.016	4.673	0.937	5.225	2.643	9.214	16.763	7.585	0.134	8.058	10.515	11.367	15.003	16.461	14.352	8.055	3.267	20.092	20.085	6.404	nan	11.358	14.881	8.495	10.392	3.441	6.170	9.401	7.109	9.246	11.863	4.015	1.969	7.812	4.994	2.600	4.880	9.016	9.214	2.439	4.958	2.850	4.534
4288	chr2	37894793	37900567	+	0	NA	intron (NM_001270436, intron 1 of 1)	intron (NM_001270436, intron 1 of 1)	1662	NM_006449	10602	Hs.369574	NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding	4.332	nan	nan	2.777	3.206	1.258	2.253	3.222	0.279	4.332	2.166	6.222	12.520	0.600	0.123	3.966	4.918	3.229	5.673	6.516	5.457	6.507	2.727	9.560	nan	4.093	6.374	4.402	6.086	nan	5.567	2.230	5.519	3.785	3.643	1.957	4.257	3.101	1.493	2.311	1.484	0.994	1.940	2.253	6.222	0.706	5.560	2.150	1.624
2000	chr12	65217603	65221491	+	0	NA	intron (NM_015279, intron 1 of 11)	intron (NM_015279, intron 1 of 11)	1195	NM_015279	23329	Hs.192492	NM_015279	ENSG00000111490	TBC1D30	-	TBC1 domain family member 30	protein-coding	4.757	0.523	2.306	6.693	4.950	1.896	4.179	0.095	0.125	3.131	1.785	4.589	14.570	0.333	0.063	10.559	9.723	0.054	0.164	16.168	12.311	11.724	3.886	0.481	0.451	4.987	5.932	13.305	25.221	3.663	5.660	4.111	8.752	4.969	4.234	3.180	2.910	6.695	4.826	2.756	2.424	1.032	2.453	4.179	4.589	1.031	0.652	3.666	1.692
2531	chr14	30967712	30972602	+	0	NA	Intergenic	Intergenic	-58172	NM_001308097	55632	Hs.509008	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding	1.427	1.651	0.720	0.340	0.574	0.375	2.739	0.124	0.163	1.963	1.003	1.883	0.527	0.044	0.216	0.186	0.154	0.675	0.367	2.636	2.777	7.103	10.742	0.282	0.270	1.399	2.133	0.341	0.542	0.942	0.286	0.145	0.147	4.326	2.044	0.380	0.387	1.632	1.528	1.399	1.228	0.753	0.070	2.739	1.883	0.011	0.021	0.061	0.051
8199	chr9	92885776	92905975	+	0	NA	Intergenic	Intergenic	-92094	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA	1.062	nan	0.906	3.012	3.055	1.482	0.330	0.094	0.080	1.476	0.525	0.881	1.521	0.065	0.084	0.315	0.345	0.224	nan	0.766	0.821	4.237	1.954	0.142	0.161	0.659	0.899	3.940	2.694	0.275	0.289	0.966	0.844	2.994	4.367	0.249	0.854	3.052	1.224	0.404	1.797	0.673	0.230	0.330	0.881	0.106	1.347	0.382	0.105
7211	chr7	26233538	26246345	+	0	NA	promoter-TSS (NM_007276)	promoter-TSS (NM_007276)	472	NM_031243	3181	Hs.487774	NM_002137	ENSG00000122566	HNRNPA2B1	HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	8.075	4.107	7.549	5.300	6.136	3.759	4.055	2.968	0.241	3.822	1.879	7.314	10.635	7.508	0.274	7.370	7.015	6.349	nan	11.056	9.337	7.145	3.929	12.136	12.466	5.216	6.432	7.153	9.822	7.782	9.572	3.042	7.790	9.344	8.498	9.068	8.128	3.077	1.560	4.454	4.564	2.020	3.817	4.055	7.314	1.300	3.197	2.724	3.492
2410	chr13	102060038	102071231	+	0	NA	intron (NM_052867, intron 1 of 43)	intron (NM_052867, intron 1 of 43)	3179	NM_052867	259232	Hs.525146	NM_052867	ENSG00000102452	NALCN	CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1	sodium leak channel, non-selective	protein-coding	0.776	0.776	0.518	0.213	0.513	0.264	2.155	0.071	0.059	0.647	0.321	0.707	1.826	0.106	0.050	0.804	0.693	0.718	1.308	1.926	2.107	2.404	1.085	0.189	0.179	0.838	nan	0.205	0.383	1.349	1.564	0.121	0.125	0.098	0.144	0.692	nan	0.444	0.321	7.730	0.549	0.060	0.398	2.155	0.707	0.336	0.122	0.026	0.221
6557	chr5	174775642	174794526	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	86079	NM_000794	1812	Hs.2624	NM_000794	ENSG00000184845	DRD1	DADR|DRD1A	dopamine receptor D1	protein-coding	0.591	0.707	0.754	0.152	0.113	0.043	0.045	0.036	0.043	0.075	0.119	0.304	1.959	0.069	0.087	0.241	0.167	0.291	nan	0.591	0.823	0.853	0.301	0.061	0.067	0.135	nan	2.140	3.011	0.423	0.299	0.143	0.210	0.137	0.130	0.125	0.274	0.670	0.545	0.148	2.565	0.031	0.013	0.045	0.304	0.057	0.048	0.067	0.059
1737	chr11	130180894	130194323	+	0	NA	Intergenic	L1M2|LINE|L1	-3001	NM_001301098	29068	Hs.721470	NM_014155	ENSG00000196323	ZBTB44	BTBD15|HSPC063|ZNF851	zinc finger and BTB domain containing 44	protein-coding	1.174	nan	1.200	1.437	1.531	0.823	0.754	0.222	0.024	0.778	0.544	1.452	nan	1.064	0.130	3.679	3.930	1.323	1.695	1.760	1.824	1.961	0.702	2.608	2.707	1.081	1.536	1.837	2.379	2.014	2.230	4.195	6.362	1.461	1.318	1.505	2.247	1.283	0.816	0.940	1.386	0.403	1.021	0.754	1.452	0.101	0.584	3.432	0.581
3143	chr16	53074547	53080295	+	0	NA	intron (NR_136518, intron 2 of 2)	intron (NR_136518, intron 2 of 2)	9364	NR_136518	105371267		NR_136518	ENSG00000277639	LOC105371267	PR-lncRNA-1	p53-regulated lncRNA 1	ncRNA	nan	nan	nan	0.184	0.315	0.362	0.536	0.183	0.028	0.136	0.123	0.104	1.187	0.133	0.039	4.765	11.789	0.750	1.071	0.453	0.403	0.364	0.189	1.689	1.732	2.790	nan	nan	nan	nan	0.462	1.740	3.370	0.138	0.115	0.309	nan	nan	0.545	0.431	0.079			0.536	0.104	1.184	0.104	2.167	0.110
4814	chr20	3624992	3668206	+	0	NA	Intergenic	MER41A|LTR|ERV1	-2553	NM_145762	64096	Hs.302025	NM_022139	ENSG00000125861	GFRA4	-	GDNF family receptor alpha 4	protein-coding	0.752	1.002	0.733	0.203	0.228	0.127	0.297	0.103	0.060	0.117	0.092	0.210	0.608	0.073	0.071	0.692	0.782	0.258	0.281	0.837	0.884	0.875	0.236	0.355	0.350	0.394	0.675	6.104	6.021	0.470	0.241	0.454	0.619	0.141	0.097	0.195	0.296	0.866	0.702	3.839	2.661	0.044	0.051	0.297	0.210	0.206	0.209	0.178	0.086
5128	chr21	40718858	40722827	+	0	NA	exon (NM_004965, exon 1 of 6)	exon (NM_004965, exon 1 of 6)	205	NM_004965	3150	Hs.356285	NM_004965	ENSG00000205581	HMGN1	HMG14	high mobility group nucleosome binding domain 1	protein-coding	7.092	3.523	6.179	7.302	8.477	4.830	4.548	1.325	0.245	2.143	0.766	7.448	19.744	4.714	0.136	6.898	9.084	7.884	11.296	10.838	9.421	nan	2.886	15.988	16.586	5.029	nan	10.679	16.761	10.544	11.568	4.297	8.509	8.177	6.645	8.708	8.876	4.605	2.327	7.563	7.700	2.041	4.292	4.548	7.448	1.977	3.298	2.928	4.017
5789	chr3	193834406	193861915	+	0	NA	Intergenic	Intergenic	-5771	NM_005524	3280	Hs.250666	NM_005524	ENSG00000114315	HES1	HES-1|HHL|HRY|bHLHb39	hes family bHLH transcription factor 1	protein-coding	nan	3.712	2.368	3.411	3.162	1.592	1.130	2.771	0.298	1.779	0.771	2.516	nan	1.604	0.079	1.856	2.560	2.762	8.699	2.050	1.559	4.964	2.719	2.771	2.644	0.590	1.123	4.140	5.053	2.566	2.593	1.188	1.681	2.472	2.352	1.282	1.607	1.346	0.751	4.157	0.677	0.686	1.049	1.130	2.516	0.712	1.081	1.151	0.606
6334	chr5	73756307	73818599	+	0	NA	intron (NR_126354, intron 1 of 2)	intron (NR_126354, intron 1 of 2)	45348	NR_126354	104310351	Hs.582291	NR_126354	ENSG00000248673	LINC01331	-	long intergenic non-protein coding RNA 1331	ncRNA	0.863	nan	0.909	0.082	0.309	0.159	0.348	0.129	0.067	0.085	0.092	0.137	0.315	3.339	0.186	0.443	0.414	1.480	1.128	0.929	0.802	nan	0.231	0.189	0.198	0.729	nan	0.497	0.366	0.465	0.245	0.269	0.370	0.434	0.385	0.429	1.056	0.508	0.401	0.233	0.699	0.110	0.051	0.348	0.137	0.045	0.155	0.106	0.344
3411	chr17	41183244	41195212	+	0	NA	Intergenic	Intergenic	11970	NM_005440	8153	Hs.603111	NM_005440	ENSG00000108830	RND2	ARHN|RHO7|RhoN	Rho family GTPase 2	protein-coding	1.470	1.022	nan	0.395	0.601	0.258	0.548	0.106	0.108	0.234	0.193	0.282	0.668	0.127	0.102	4.245	6.611	1.065	0.861	0.856	nan	0.707	0.303	1.182	1.233	0.450	1.013	0.430	nan	1.960	1.859	1.027	1.639	0.369	0.316	1.337	2.162	0.814	0.608	0.255	0.208	0.072	1.913	0.548	0.282	0.056	0.074	0.796	0.690
3284	chr17	14672141	14685782	+	0	NA	Intergenic	MIRc|SINE|MIR	-239161	NR_135638	101928475	Hs.638944	NR_135638	ENSG00000232058	LOC101928475	-	uncharacterized LOC101928475	ncRNA	0.465	0.430	0.565	0.020	3.290	2.256	0.057	0.027	0.047	0.023	0.048	0.017	0.192	0.064	0.083	1.390	1.932	3.354	15.069	0.148	0.203	0.172	0.089	0.276	0.400	0.066	0.155	0.133	0.158	nan	0.093	0.122	0.241	0.046	0.052	0.200	0.305	0.080	0.117	0.016	0.047	0.035	0.105	0.057	0.017		0.052	0.065	0.028
7048	chr6	151770667	151778616	+	0	NA	intron (NM_001286562, intron 1 of 3)	intron (NM_001286562, intron 1 of 3)	1248	NM_001286562	79624	Hs.15929	NM_024573	ENSG00000146476	ARMT1	C6orf211	acidic residue methyltransferase 1	protein-coding	nan	2.926	2.190	2.484	1.625	1.070	2.107	1.270	0.204	0.768	0.307	1.702	3.655	1.777	0.166	3.069	3.198	2.827	3.703	2.825	nan	5.389	1.819	3.424	3.099	1.399	2.024	2.503	3.679	5.721	6.363	1.628	3.598	1.870	1.962	8.063	10.200	1.615	0.605	0.906	1.580	0.308	0.686	2.107	1.702	0.379	1.471	1.022	3.530
2122	chr12	105708446	105716474	+	0	NA	intron (NR_131986, intron 1 of 2)	LTR24B|LTR|ERV1	8335	NR_131986	105369954	Hs.368938	NR_131986	ENSG00000257642	KCCAT198	-	renal clear cell carcinoma-associated transcript 198	ncRNA	0.864	0.988	nan	0.230	1.497	0.838	0.301	0.835	0.134	1.907	0.693	1.182	0.673	0.017	0.139	0.261	0.081	0.589	2.385	0.627	0.713	8.763	4.688	0.225	0.343	0.269	0.449	0.331	0.635	0.345	0.190	0.137	0.176	1.789	1.257	0.207	0.383	2.084	1.553	0.149	0.176	0.463	0.058	0.301	1.182	0.121	0.013	0.024	0.076
280	chr1	44725321	44787458	+	0	NA	intron (NM_001301701, intron 5 of 7)	intron (NM_001301701, intron 5 of 7)	-38158	NR_132966	106635545		NR_132966		SNORA110	-	small nucleolar RNA, H/ACA box 110	snoRNA	nan	1.156	nan	0.719	0.578	0.293	0.983	0.284	0.083	2.086	0.855	0.809	0.778	0.077	0.108	0.447	0.650	0.417	0.649	1.480	1.553	2.012	0.541	0.486	0.476	0.492	nan	nan	9.590	0.852	0.716	0.528	nan	0.690	0.733	0.541	1.249	1.788	1.045	0.572	1.938	0.219	1.333	0.983	0.809	0.209	0.561	0.128	0.309
3498	chr17	61817547	61821103	+	0	NA	promoter-TSS (NM_001165969)	promoter-TSS (NM_001165969)	5	NM_001165969	92335	Hs.514402	NM_153335	ENSG00000266173	STRADA	LYK5|NY-BR-96|PMSE|STRAD|Stlk	STE20-related kinase adaptor alpha	protein-coding	6.258	nan	5.664	8.662	9.256	5.385	4.714	2.602	0.589	4.540	1.782	6.591	14.880	4.681	0.115	10.366	8.922	6.361	8.898	10.163	9.673	11.443	4.251	13.227	13.675	3.922	nan	13.882	18.799	8.357	7.966	2.544	6.265	10.467	10.823	6.497	8.866	4.341	2.549	3.617	4.896	2.435	3.932	4.714	6.591	1.934	3.378	2.951	3.093
7619	chr8	23187744	23197833	+	0	NA	promoter-TSS (NR_038323)	promoter-TSS (NR_038323)	-933	NR_038323	100507156	Hs.661130	NR_038323	ENSG00000253837	LOC100507156	-	uncharacterized LOC100507156	ncRNA	nan	0.670	nan	0.084	0.354	0.250	0.277	0.572	0.153	0.061	0.050	0.178	0.140	0.097	0.084	0.556	0.899	0.341	0.865	nan	0.839	nan	0.148	0.116	0.164	0.590	0.913	0.648	1.109	1.313	1.247	0.164	0.174	0.255	0.262	1.440	3.935	nan	nan	0.117	0.071	0.057	0.055	0.277	0.178	0.261	1.732	0.029	1.389
8346	chr9	140188986	140211739	+	0	NA	TTS (NM_017820)	TTS (NM_017820)	-3659	NM_001004354	441478	Hs.535075	NM_001004354	ENSG00000198435	NRARP	-	NOTCH-regulated ankyrin repeat protein	protein-coding	1.734	1.459	1.247	4.193	0.989	0.502	1.503	0.291	0.219	0.497	0.182	1.737	0.970	1.224	0.078	1.148	2.069	0.806	nan	2.078	nan	2.238	0.619	0.736	0.712	0.279	0.436	3.994	6.693	1.534	1.682	0.826	1.039	1.772	1.877	0.838	0.937	0.679	0.552	0.964	0.383	0.371	0.532	1.503	1.737	1.015	3.365	0.482	0.135
1509	chr11	71931489	71944279	+	0	NA	intron (NM_001567, intron 1 of 27)	intron (NM_001567, intron 1 of 27)	2002	NM_001567	3636	Hs.523875	NM_001567	ENSG00000165458	INPPL1	OPSMD|SHIP2	inositol polyphosphate phosphatase like 1	protein-coding	nan	2.876	3.490	5.455	6.600	3.330	0.862	0.916	0.176	3.859	2.028	4.962	7.871	2.667	0.151	2.685	4.489	1.957	2.498	5.962	6.358	7.112	2.166	4.220	4.191	1.340	1.953	5.174	6.086	0.985	0.875	1.055	2.333	4.349	3.595	0.744	1.375	2.602	1.279	4.508	4.840	2.130	2.123	0.862	4.962	0.343	3.474	1.500	0.316
4177	chr2	2686880	2705029	+	0	NA	Intergenic	Intergenic	-360869	NM_015025	23040	Hs.434418	NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding	0.424	0.486	0.761	0.213	1.271	0.648	0.438	0.045	0.054	0.344	0.204	2.945	3.177	0.042	0.103	0.387	0.483	0.231	0.270	3.718	3.930	1.454	0.398	0.165	0.167	0.629	0.928	3.612	2.539	0.540	0.462	0.259	0.253	0.163	0.154	0.188	0.197	1.206	0.820	1.404	0.882	0.016	0.066	0.438	2.945	0.344	1.533	0.032	0.028
8099	chr9	31020420	31038562	+	0	NA	Intergenic	Intergenic	351997	NR_135134	101929620	Hs.547175	NR_135134	ENSG00000260720	LINC01243	-	long intergenic non-protein coding RNA 1243	ncRNA	0.627	nan	0.719	0.184	0.411	0.194	0.406	0.063	0.027	1.158	0.784	1.144	0.502	0.012	0.080	0.209	0.192	0.459	1.041	1.398	1.614	10.410	5.896	0.142	0.142	0.380	0.586	0.238	0.316	0.651	0.359	0.087	0.190	2.971	2.570	0.204	0.240	1.058	0.827	0.021	0.430	0.342	0.119	0.406	1.144		0.319	0.022	0.048
5631	chr3	164168053	164183434	+	0	NA	Intergenic	L1MB3|LINE|L1	-286399	NR_031665	100302148		NR_031665	ENSG00000221251	MIR1263	MIRN1263|hsa-mir-1263	microRNA 1263	ncRNA	1.089	1.066	0.909	0.262	0.366	0.250	0.075	2.146	0.417	2.563	1.873	0.409	0.139	0.029	0.096	0.368	0.220	0.225	0.279	0.351	0.428	1.901	0.588	0.327	0.282	3.351	4.100	nan	0.513	nan	0.309	0.093	0.216	0.127	0.125	0.402	0.711	0.475	0.378	0.040	0.052	0.056	0.120	0.075	0.409	0.032	0.047	0.058	0.136
6611	chr6	10393598	10431944	+	0	NA	promoter-TSS (NM_001032280)	promoter-TSS (NM_001032280)	-164	NM_001032280	7020	Hs.519880	NM_003220	ENSG00000137203	TFAP2A	AP-2|AP-2alpha|AP2TF|BOFS|TFAP2	transcription factor AP-2 alpha	protein-coding	1.411	nan	2.234	2.064	1.542	0.885	3.022	0.534	0.134	1.227	0.793	3.999	3.274	0.717	0.101	2.791	3.269	2.435	3.686	2.354	1.930	3.556	1.257	2.109	2.073	1.071	1.471	0.255	0.253	1.003	0.712	0.758	1.513	4.391	4.045	0.776	1.311	1.857	1.023	1.187	0.572	1.372	2.568	3.022	3.999	0.041	0.732	0.733	0.362
1325	chr11	16625562	16636539	+	0	NA	Intergenic	Intergenic	-129098	NM_014267	10944	Hs.368226	NM_014267	ENSG00000110696	C11orf58	IMAGE145052|SMAP	chromosome 11 open reading frame 58	protein-coding	1.008	nan	2.856	4.042	3.070	1.874	0.529	0.159	0.062	0.184	0.141	1.756	7.479	0.322	0.071	nan	0.434	5.098	6.932	9.544	7.016	0.413	0.138	0.868	0.743	1.376	nan	2.014	2.449	1.055	0.635	0.752	1.301	0.555	0.305	0.253	0.742	1.120	nan	2.023	0.251	0.069	0.058	0.529	1.756	0.036	1.410	0.117	0.647
1643	chr11	112666185	112680760	+	0	NA	Intergenic	L1MA8|LINE|L1	-158497	NM_181351	4684	Hs.503878	NM_000615	ENSG00000149294	NCAM1	CD56|MSK39|NCAM	neural cell adhesion molecule 1	protein-coding	1.239	1.897	0.814	0.182	0.462	0.263	0.683	0.026	0.072	0.367	0.285	0.299	0.607	0.037	0.105	5.133	nan	0.395	0.452	1.899	1.708	2.035	0.736	0.555	0.649	1.119	nan	1.557	2.231	1.728	1.428	1.046	1.538	0.639	0.850	0.716	2.335	1.265	0.986	0.622	0.176	0.177	0.627	0.683	0.299	0.373	0.175	0.700	0.949
8105	chr9	32549592	32554243	+	0	NA	promoter-TSS (NR_102376)	promoter-TSS (NR_102376)	202	NR_033992	100129250	Hs.664395	NR_033991	ENSG00000235453	TOPORS-AS1	C9orf133	TOPORS antisense RNA 1	ncRNA	4.745	8.350	3.542	6.030	5.092	3.256	2.911	2.906	0.206	2.965	1.498	4.000	15.803	3.129	0.100	3.222	3.644	12.309	12.181	9.906	7.788	9.065	5.191	10.565	11.215	5.724	6.754	5.403	7.900	7.083	7.643	2.515	5.215	5.862	7.213	4.664	4.496	4.862	2.584	3.988	2.610	1.127	3.324	2.911	4.000	0.356	1.268	1.940	1.454
8375	chrX	23796485	23864908	+	0	NA	Intergenic	AluSq|SINE|Alu	29421	NR_027783	6303	Hs.28491	NM_002970	ENSG00000130066	SAT1	DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1	spermidine/spermine N1-acetyltransferase 1	protein-coding	0.724	2.351	0.670	0.350	0.464	0.260	0.223	0.562	0.256	0.149	0.143	0.598	1.614	0.079	0.057	0.201	0.224	2.559	6.832	0.327	0.408	0.815	0.234	0.383	0.428	0.295	0.422	1.280	1.921	0.484	0.238	0.704	1.144	0.790	1.086	0.273	0.476	0.467	0.388	0.210	0.113	0.224	0.059	0.223	0.598	0.042	0.239	0.678	0.112
4277	chr2	28838809	28848350	+	0	NA	intron (NR_138141, intron 26 of 35)	intron (NR_138141, intron 26 of 35)	54355	NR_138141	151056	Hs.444933	NM_153021	ENSG00000163803	PLB1	PLB|PLB/LIP	phospholipase B1	protein-coding	1.081	1.507	0.932	0.627	0.735	0.351	2.324	0.287	0.100	0.674	0.243	0.477	5.323	0.069	0.153	0.430	0.495	0.520	0.900	0.589	0.722	2.827	4.786	0.585	0.553	0.545	0.736	1.918	nan	0.487	0.205	0.364	0.465	0.510	0.594	0.550	1.727	1.334	1.044	0.509	0.594	0.111	0.198	2.324	0.477	0.102	0.244	0.042	0.345
8037	chr9	7363987	7380205	+	0	NA	Intergenic	AluYf4|SINE|Alu	427710	NM_001318058	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding	0.686	1.817	0.797	0.195	0.342	0.158	0.378	1.024	0.098	0.193	0.144	0.452	0.675	0.027	0.079	0.157	0.152	0.181	0.306	0.453	0.472	2.790	0.742	0.157	0.135	0.492	0.798	0.498	0.496	0.350	0.189	0.729	1.397	0.382	0.462	0.298	nan	2.294	1.376	4.344	0.294	0.117	0.319	0.378	0.452	0.047	0.735	1.646	0.077
8080	chr9	19229235	19234111	+	0	NA	intron (NM_001330640, intron 1 of 32)	intron (NM_001330640, intron 1 of 32)	910	NM_017925	55667	Hs.249591	NM_017925	ENSG00000137145	DENND4C	C9orf55|C9orf55B|RAB10GEF|bA513M16.3	DENN domain containing 4C	protein-coding	nan	8.383	3.365	5.167	4.273	2.037	2.626	2.058	0.300	3.670	1.929	4.561	13.139	2.401	0.060	2.828	4.399	5.931	7.848	8.370	6.927	6.178	2.475	4.411	4.497	2.527	3.054	4.260	7.642	5.238	5.781	4.306	10.724	6.338	4.976	2.677	3.895	4.425	2.638	3.641	4.934	1.483	3.850	2.626	4.561	0.561	2.537	5.329	1.443
4075	chr19	42208779	42217756	+	0	NA	intron (NM_004363, intron 1 of 9)	L2a|LINE|L2	763	NM_001291484	1048	Hs.709196	NM_004363	ENSG00000105388	CEACAM5	CD66e|CEA	carcinoembryonic antigen related cell adhesion molecule 5	protein-coding	0.755	3.863	0.694	0.917	5.092	2.521	0.086	0.050	0.018	0.382	0.151	1.776	2.487	0.132	0.109	0.171	0.155	0.061	0.121	0.280	0.285	1.149	0.361	0.276	0.194	0.173	0.250	1.992	1.626	0.419	0.120	0.196	0.207	1.224	1.103	0.142	0.276	4.347	1.461	0.648	0.864	0.287	0.009	0.086	1.776		0.136	0.064	0.041
1502	chr11	70747413	70763780	+	0	NA	intron (NM_012309, intron 7 of 22)	MIRc|SINE|MIR	-37123	NR_037437	100500844		NR_037437	ENSG00000263744	MIR3664	mir-3664	microRNA 3664	ncRNA	nan	1.391	0.419	0.075	2.072	1.151	1.361	0.100	0.059	1.348	0.626	5.139	3.987	0.067	0.066	1.570	1.359	0.650	0.782	5.777	6.634	3.389	1.096	0.930	1.040	1.590	2.040	4.223	4.629	0.423	0.357	0.704	1.039	2.128	1.532	0.175	0.240	2.424	1.109	3.547	3.292	0.387	0.034	1.361	5.139	0.262	0.044	0.484	0.030
8057	chr9	13987860	13996085	+	0	NA	Intergenic	Intergenic	64002	NR_038194	100113404	Hs.149786	NR_038194	ENSG00000205636	LINC00583	C9orf146	long intergenic non-protein coding RNA 583	ncRNA	nan	nan	1.831	0.715	1.609	0.877	1.904	0.155	0.039	0.325	0.240	1.242	5.720	0.053	0.080	0.151	0.170	0.260	0.325	4.960	4.547	2.719	0.662	0.119	0.102	8.882	11.243	1.296	1.437	0.389	0.160	0.217	0.258	2.750	2.175	0.180	0.291	1.214	1.117	6.377	0.350	0.835	0.120	1.904	1.242	0.140	0.061	0.048	0.030
8175	chr9	84235254	84246140	+	0	NA	intron (NM_005077, intron 8 of 19)	intron (NM_005077, intron 8 of 19)	63753	NM_001303104	7088	Hs.197320	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	transducin like enhancer of split 1	protein-coding	0.895	1.015	1.245	0.516	1.280	0.502	0.923	0.144	0.045	0.560	0.435	0.366	0.289	0.061	0.089	0.174	0.323	1.315	1.778	0.554	0.591	0.476	0.206	0.270	0.196	0.449	0.561	0.507	0.560	0.222	0.107	0.385	0.664	2.954	4.959	0.329	0.590	1.878	0.934	0.036	0.195	0.830	0.277	0.923	0.366	0.204	0.127	0.337	0.079
4743	chr2	227655280	227666888	+	0	NA	exon (NM_005544, exon 1 of 2)	exon (NM_005544, exon 1 of 2)	2422	NM_005544	3667	Hs.471508	NM_005544	ENSG00000169047	IRS1	HIRS-1	insulin receptor substrate 1	protein-coding	nan	1.364	1.961	1.801	2.243	1.126	2.458	1.915	0.188	1.307	0.703	1.864	nan	4.527	0.145	2.206	2.794	1.823	2.922	3.103	2.582	1.975	0.937	5.557	5.620	3.642	4.415	3.758	nan	2.752	3.415	1.411	2.094	1.652	1.304	2.642	nan	1.286	0.858	0.882	0.122	0.349	0.866	2.458	1.864	0.386	1.679	0.879	1.106
6930	chr6	121850618	121855772	+	0	NA	Intergenic	Intergenic	96472	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CMDR|CX43|EKVP|GJAL|HLHS1|HSS|ODDD|PPKCA	gap junction protein alpha 1	protein-coding	1.564	0.922	0.834	0.204	1.403	0.752	3.924	0.036	0.156	0.673	0.353	0.209	0.154	1.201	0.101	0.265	0.146	0.396	0.947	0.201	0.203	4.583	1.050	0.264	0.234	0.103	0.134	0.252	0.181	0.446	0.186	0.062	0.114	9.889	10.482	0.203	0.379	1.511	0.761	0.041	0.104	3.037	0.031	3.924	0.209		0.039	0.038	0.025
3488	chr17	58819339	58827029	+	0	NA	intron (NM_001330413, intron 5 of 25)	intron (NM_001330413, intron 5 of 25)	68012	NM_001099432	54828	Hs.655028	NM_017679	ENSG00000141376	BCAS3	GAOB1|MAAB	BCAS3, microtubule associated cell migration factor	protein-coding	0.964	1.060	1.041	0.227	0.379	0.311	0.116	1.812	0.107	0.223	0.254	0.157	0.646	0.140	0.102	4.206	2.663	8.794	11.969	0.388	0.393	0.378	0.203	nan	5.259	0.391	0.677	nan	nan	0.539	0.267	2.095	3.782	0.119	0.197	0.342	0.499	0.471	0.536	0.007	0.081	0.013	0.616	0.116	0.157	0.012		1.206	0.141
4665	chr2	201752031	201755904	+	0	NA	promoter-TSS (NM_021824)	promoter-TSS (NM_021824)	-83	NM_001136039	60491	Hs.145284	NM_021824	ENSG00000196290	NIF3L1	ALS2CR1|CALS-7|MDS015	NGG1 interacting factor 3 like 1	protein-coding	6.529	6.150	5.058	5.799	5.799	2.728	3.339	2.118	1.067	2.138	1.335	5.013	10.549	4.562	0.162	5.868	6.015	7.534	10.727	5.219	3.851	7.982	3.271	23.313	25.308	5.020	6.144	9.448	13.707	8.840	10.676	6.413	7.371	4.525	4.890	7.360	9.562	2.444	1.236	4.597	2.409	0.644	2.809	3.339	5.013	1.630	3.136	2.750	2.541
2935	chr15	69976089	69996345	+	0	NA	intron (NR_126437, intron 5 of 5)	LTR50|LTR|ERVL	101678	NR_126437	104472713	Hs.430824	NR_126437	ENSG00000259641	PCAT29	-	prostate cancer associated transcript 29 (non-protein coding)	ncRNA	0.658	1.137	nan	0.712	1.803	0.915	0.208	0.151	0.079	0.257	0.179	3.235	2.774	0.029	0.067	1.070	1.082	0.194	0.303	2.058	2.049	nan	0.107	0.508	0.517	0.103	0.204	2.574	2.340	0.561	0.225	0.454	0.900	0.194	0.199	0.285	0.406	0.786	0.388	1.848	0.642	0.066	0.845	0.208	3.235	0.219	0.025	0.469	0.073
6949	chr6	125301572	125330805	+	0	NA	intron (NR_104440, intron 1 of 6)	intron (NR_104440, intron 1 of 6)	11678	NR_104440	154214	Hs.12876	NM_152553	ENSG00000146373	RNF217	C6orf172|IBRDC1|OSTL|dJ84N20.1	ring finger protein 217	protein-coding	0.944	1.059	0.991	0.191	0.219	0.164	0.323	0.952	0.142	0.049	0.109	0.115	0.285	0.067	0.114	0.599	0.439	4.637	3.574	0.360	0.507	1.263	0.428	0.312	0.283	0.298	0.421	0.341	0.322	0.572	0.270	0.060	0.193	0.370	0.650	0.567	1.848	0.348	0.296	0.272	0.121	0.072	0.011	0.323	0.115	0.063	0.056	0.037	0.199
4270	chr2	26906426	26917276	+	0	NA	Intergenic	Intergenic	-3730	NM_002246	3777	Hs.24040	NM_002246	ENSG00000171303	KCNK3	K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1	potassium two pore domain channel subfamily K member 3	protein-coding	1.407	2.218	3.657	3.563	1.092	0.487	0.608	0.074		2.966	0.734	3.307	6.175	0.082	0.076	0.810	1.586	0.122	0.129	2.691	2.714	9.221	2.501	0.197	0.230	1.061	1.551	9.441	nan	0.970	0.996	0.793	1.441	2.824	1.671	0.866	1.778	4.197	2.064	6.581	5.793	0.747	0.749	0.608	3.307	0.860	3.300	0.497	0.202
5078	chr21	25330802	25344112	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	356233	NR_109963	101927869	Hs.555591	NR_109963	ENSG00000224832	LINC01689	-	long intergenic non-protein coding RNA 1689	ncRNA	0.620	0.890	1.122	0.106	0.784	0.563	0.256	0.051	0.072	1.144	0.356	0.539	1.783	0.031	0.083	0.372	0.404	0.241	0.538	1.466	1.308	5.147	1.900	0.045	0.050	0.730	1.020	0.939	0.800	0.599	0.484	0.066	0.099	5.936	4.786	0.165	nan	3.469	1.711	0.030	0.059	0.997	0.115	0.256	0.539		1.140	0.015	0.018
1706	chr11	121964364	121976320	+	0	NA	TTS (NR_029671)	TTS (NR_029671)	210	NR_029671	406911		NR_029671	ENSG00000207971	MIR125B1	MIRN125B1|mir-125b-1	microRNA 125b-1	ncRNA	1.476	0.766	3.774	0.037	0.200	0.107	0.256	2.219	0.149	2.008	2.829	0.050	8.717	0.878	0.126	0.354	0.142	0.054	0.114	1.036	1.018	0.116	0.106	0.268	0.280	0.162	0.293	0.176	0.144	0.349	0.128	0.251	0.387	1.313	1.255	0.072	nan	0.564	0.441	6.526	4.820	0.349	0.034	0.256	0.050		0.017	0.075	0.023
6282	chr5	58956101	58962079	+	0	NA	intron (NM_001165899, intron 3 of 16)	AluSx1|SINE|Alu	-76766	NM_006203	5144	Hs.117545	NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding	nan	nan	2.597	0.088	1.365	0.666	0.388	0.376		1.020	0.415	0.206	0.374	0.846	0.163	0.209	0.099	0.453	0.652	0.214	0.338	5.738	2.548	0.163	0.202	2.167	2.876	1.167	1.038	nan	0.831	0.145	0.187	4.582	9.172	1.143	3.621	0.938	0.841	0.119	0.030	1.096	0.027	0.388	0.206	0.034	0.286	0.033	1.041
8359	chrUn_gl000220	4229	20304	+	0	NA	Intergenic	MIRb|SINE|MIR	-84863	NR_038958	100507412	Hs.426704	NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA	3.379	nan	3.370	2.380	nan	0.816	1.279	0.614	0.310	1.152	nan	1.302	6.232	1.360	0.271	1.854	1.952	2.134	3.553	0.984	1.064	1.387	0.317	3.405	3.527	1.733	2.630	0.542	0.552	nan	2.146	1.213	1.935	3.373	nan	1.205	nan	1.710	1.710	8.268	1.293	0.553	0.428	1.279	1.302	0.295	2.211	1.136	0.842
5658	chr3	171170077	171180706	+	0	NA	intron (NM_001161560, intron 1 of 31)	intron (NM_001161560, intron 1 of 31)	2806	NM_001161564	23043	Hs.34024	NM_015028	ENSG00000154310	TNIK	MRT54	TRAF2 and NCK interacting kinase	protein-coding	1.637	3.125	0.974	0.977	1.655	0.923	1.162	1.923	0.364	0.413	0.377	0.225	1.901	0.132	0.098	0.939	1.358	1.817	2.169	2.432	1.986	1.060	0.287	0.843	0.886	4.661	5.908	1.383	2.008	5.830	6.037	1.150	2.327	0.060	0.182	0.454	0.832	1.378	0.937	0.916	1.698		2.707	1.162	0.225	0.366	0.076	0.996	0.464
7719	chr8	64509772	64520922	+	0	NA	Intergenic	Intergenic	136940	NR_125825	102724612	Hs.97639	NR_125825	ENSG00000253894	LOC102724612	-	uncharacterized LOC102724612	ncRNA	0.991	0.629	0.700	0.072	0.198	0.122	0.068	0.074	0.101	0.403	0.420	0.086	0.549	0.010	0.082	0.734	1.155	0.305	0.236	0.327	0.406	6.400	2.721	0.140	0.123	0.209	nan	0.126	0.105	nan	0.832	0.592	0.939	0.922	0.827	0.331	0.592	1.956	0.877	0.029	0.176	0.101	0.022	0.068	0.086	0.017	0.073	0.290	0.343
1147	chr10	77466105	77477215	+	0	NA	promoter-TSS (NR_132791)	promoter-TSS (NR_132791)	-553	NR_132791	105378367	Hs.464836	NR_132791		LOC105378367	-	uncharacterized LOC105378367	ncRNA	0.817	nan	0.532	0.095	1.362	0.809	0.197	0.155	0.088	0.142	0.073	0.483	0.366	0.049	0.064	5.252	7.183	3.073	1.316	0.366	0.502	1.832	0.603	0.238	0.303	0.190	0.327	0.657	nan	0.373	0.199	3.499	5.196	0.544	0.254	0.195	nan	0.554	0.445	0.070	0.152	0.060	0.079	0.197	0.483	0.026	0.329	5.719	0.022
7173	chr7	14926046	14947924	+	0	NA	Intergenic	Intergenic	-55910	NM_004080	1607	Hs.567255	NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding	nan	1.536	nan	0.932	1.608	1.004	0.921	0.121	0.119	1.776	1.367	1.671	8.659	0.064	0.119	nan	0.394	0.216	0.326	3.596	3.631	3.429	1.054	0.350	0.415	3.443	3.651	1.232	1.302	0.574	0.318	0.094	0.100	4.831	5.248	0.938	1.976	1.622	0.842	0.797	0.772	1.076	0.279	0.921	1.671	0.121	0.626	0.028	0.101
8121	chr9	36398615	36401990	+	0	NA	promoter-TSS (NM_194329)	promoter-TSS (NM_194329)	-6	NM_194329	152006	Hs.333503	NM_022781	ENSG00000137075	RNF38	-	ring finger protein 38	protein-coding	6.356	10.999	6.701	6.289	6.527	3.572	3.105	2.633	0.241	5.211	1.746	5.661	13.872	2.914	0.121	7.562	6.912	8.822	10.527	15.343	13.930	15.393	11.137	14.844	15.726	5.842	6.881	8.506	15.819	9.723	10.651	5.818	6.993	9.527	12.066	8.444	4.463	7.708	4.088	6.004	4.591	1.497	5.052	3.105	5.661	0.458	1.551	2.458	1.431
4870	chr20	19736211	19739988	+	0	NA	Intergenic	CpG	-129066	NM_001242581	54453	Hs.472270	NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding	6.377	nan	6.739	1.876	2.624	1.275	2.603	4.854	0.370	0.582	0.434	3.650	11.649	0.365	0.082	6.404	9.662	2.783	5.036	7.100	5.877	7.487	2.359	3.755	4.182	1.483	1.732	6.675	8.716	4.971	5.814	2.524	4.262	0.873	0.665	2.848	5.120	2.154	1.436	2.511	1.831	0.223	1.506	2.603	3.650	5.150	2.241	2.438	0.788
3902	chr18	74389921	74421757	+	0	NA	TTS (NR_122073)	TTS (NR_122073)	3853	NR_122073	400661	Hs.514963	NR_122073	ENSG00000276397	LINC01879	-	long intergenic non-protein coding RNA 1879	ncRNA	nan	nan	0.600	0.315	0.457	0.248	3.455	0.061	0.076	0.395	0.187	1.146	0.541	0.065	0.067	0.478	0.507	0.397	0.589	1.270	nan	3.077	1.511	0.432	0.472	0.077	0.156	1.726	nan	0.485	0.230	0.159	0.272	0.546	0.756	0.245	0.341	1.226	0.859	0.022	0.206	0.060	0.093	3.455	1.146	0.040	0.340	0.091	0.085
7425	chr7	107577696	107604704	+	0	NA	intron (NM_002291, intron 24 of 33)	intron (NM_002291, intron 24 of 33)	52604	NM_002291	3912	Hs.650585	NM_002291	ENSG00000091136	LAMB1	CLM|LIS5	laminin subunit beta 1	protein-coding	nan	0.537	1.052	0.133	0.253	0.142	0.238	1.732	0.304	0.231	0.189	0.197	0.443	0.076	0.185	0.467	0.366	1.618	4.755	0.413	0.412	0.529	0.200	0.174	0.172	0.407	0.661	0.221	0.232	0.334	0.235	0.280	0.419	0.219	0.339	0.329	nan	1.500	0.917	0.084	0.201	0.085	0.097	0.238	0.197	0.077	0.121	0.069	0.133
4675	chr2	205088807	205106201	+	0	NA	Intergenic	Intergenic	296033	NM_012092	29851	Hs.56247	NM_012092	ENSG00000163600	ICOS	AILIM|CD278|CVID1	inducible T-cell costimulator	protein-coding	1.304	nan	0.880	0.412	0.607	0.304	1.146	0.061	0.093	0.343	0.198	0.758	0.804	0.031	0.063	2.683	2.488	0.450	0.194	0.741	0.930	2.215	0.559	15.650	16.753	0.418	0.685	0.841	0.915	0.491	0.265	0.332	0.429	0.103	0.107	0.210	0.281	1.035	0.542	0.055	0.046	0.011	0.745	1.146	0.758	0.112	0.233	0.051	0.051
7181	chr7	16500252	16535908	+	0	NA	Intergenic	AluSz|SINE|Alu	-12606	NM_015464	25928	Hs.648106	NM_015464	ENSG00000171243	SOSTDC1	CDA019|DAND7|ECTODIN|USAG1	sclerostin domain containing 1	protein-coding	nan	1.074	nan	0.098	0.239	0.184	0.384	0.261	0.163	0.123	0.139	0.130	0.376	0.089	0.150	nan	0.490	5.936	10.297	0.327	0.349	0.705	0.248	0.448	0.491	0.743	0.917	0.382	0.397	0.348	0.160	0.492	0.914	0.081	0.134	0.331	0.620	0.409	0.443	0.019	0.088	0.013	0.079	0.384	0.130	0.038	0.119	0.440	0.157
7383	chr7	94273493	94288742	+	0	NA	intron (NM_001346720, intron 1 of 11)	L3|LINE|CR1	4404	NM_001099400	8910	Hs.371199	NM_003919	ENSG00000127990	SGCE	DYT11|ESG|epsilon-SG	sarcoglycan epsilon	protein-coding	nan	1.272	nan	1.114	1.768	0.844	1.016	1.199	0.102	1.627	1.013	3.096	2.035	1.984	0.194	0.740	0.791	0.985	1.484	6.161	6.705	2.503	1.137	2.039	2.069	5.125	6.531	1.142	1.963	6.572	7.064	0.541	1.123	1.826	1.414	1.033	nan	5.073	3.029	0.635	1.204	0.457	0.402	1.016	3.096	0.401	1.089	0.233	0.275
1139	chr10	73003096	73031529	+	0	NA	intron (NM_170744, intron 1 of 16)	intron (NM_170744, intron 1 of 16)	-39327	NR_038453	728978	Hs.646725	NR_038453	ENSG00000237512	UNC5B-AS1	-	UNC5B antisense RNA 1	ncRNA	1.159	nan	2.109	0.306	5.215	2.895	0.376	0.619	0.045	0.551	0.152	0.534	1.481	0.152	0.076	4.485	5.198	1.907	1.190	0.517	0.536	1.277	0.581	1.174	1.242	0.802	1.253	1.472	nan	0.355	0.352	2.128	2.712	1.321	1.705	0.343	nan	1.671	0.813	1.425	1.191	0.402	0.602	0.376	0.534	0.520	0.253	1.590	0.086
1319	chr11	12843540	12870266	+	0	NA	intron (NM_021961, intron 3 of 12)	(TTGG)n|Simple_repeat|Simple_repeat	154192	NR_038904	100506305	Hs.153408	NR_038904	ENSG00000251381	LINC00958	-	long intergenic non-protein coding RNA 958	ncRNA	1.318	nan	1.884	1.996	2.745	1.440	2.538	1.753	0.181	1.678	0.944	3.382	4.524	0.248	0.110	nan	3.873	2.078	2.459	4.023	4.210	4.736	1.627	1.069	1.159	2.219	nan	2.577	3.552	1.077	1.018	1.499	3.037	4.068	4.579	1.117	3.896	2.814	nan	3.901	4.138	1.538	0.499	2.538	3.382	0.230	0.381	3.159	0.853
1826	chr12	10969240	10986831	+	0	NA	TTS (NM_023921)	TTS (NM_023921)	833	NM_023921	50839	Hs.533756	NM_023921	ENSG00000121318	TAS2R10	T2R10|TRB2	taste 2 receptor member 10	protein-coding	0.748	0.586	0.723	0.253	0.188	0.119	0.130	0.043	0.055	0.058	0.094	0.041	0.237	0.043	0.134	0.201	0.113	0.323	0.249	nan	0.451	0.279	0.148	20.669	21.757	0.271	0.385	0.325	0.310	0.322	0.114	0.133	0.217	0.033	0.052	0.218	0.373	0.198	0.190	0.038	0.124		0.032	0.130	0.041	0.022	0.006	0.033	0.091
1747	chr11	133797617	133828073	+	0	NA	intron (NM_001277285, intron 3 of 19)	intron (NM_001277285, intron 3 of 19)	13804	NM_001277285	22997	Hs.204121	NM_014987	ENSG00000080854	IGSF9B	-	immunoglobulin superfamily member 9B	protein-coding	1.125	nan	1.044	0.356	1.169	0.545	1.743	0.024	0.039	1.032	0.524	1.411	nan	0.288	0.103	1.785	2.712	0.128	0.170	1.740	1.701	1.438	0.390	0.106	0.094	0.786	1.286	2.108	3.540	2.166	2.237	1.854	3.142	1.076	0.825	1.058	2.580	1.074	0.723	2.167	1.714	0.251	0.536	1.743	1.411	0.456	0.398	1.201	0.830
820	chr1	205609163	205620258	+	0	NA	Intergenic	L2b|LINE|L2	-12710	NM_021795	2005	Hs.497520	NM_001973	ENSG00000158711	ELK4	SAP1	ELK4, ETS transcription factor	protein-coding	1.712	1.495	1.122	0.204	0.850	0.360	0.668	0.285	0.158	0.254	0.326	0.977	0.396	0.058	0.108	0.483	0.450	0.544	0.713	1.957	1.980	0.585	0.305	nan	nan	1.034	1.210	1.009	1.261	1.035	0.872	0.352	0.339	0.353	0.275	0.519	1.282	1.249	0.810	2.014	4.830	0.130	0.335	0.668	0.977	0.745	0.073	0.580	0.156
6988	chr6	136424961	136437612	+	0	NA	intron (NM_018945, intron 3 of 12)	intron (NM_018945, intron 3 of 12)	140187	NM_138419	113115	Hs.121536	NM_138419	ENSG00000146410	MTFR2	DUFD1|FAM54A	mitochondrial fission regulator 2	protein-coding	1.461	1.350	1.256	0.759	4.336	2.311	1.588	0.207	0.038	0.807	0.397	0.979	2.236	0.034	0.091	0.452	0.525	0.274	0.625	0.814	0.814	nan	1.487	0.205	0.276	0.671	0.800	1.019	1.204	0.553	0.296	0.170	0.205	4.129	3.625	0.805	nan	2.179	1.263	0.194	0.817	1.142	0.158	1.588	0.979	0.046	0.218	0.047	0.293
1799	chr12	6944904	6963657	+	0	NA	intron (NM_002075, intron 8 of 9)	L1MC4|LINE|L1	4262	NM_002075	2784	Hs.631657	NM_002075	ENSG00000111664	GNB3	CSNB1H	G protein subunit beta 3	protein-coding	2.390	nan	nan	2.385	1.294	0.753	0.703	0.228	0.077	0.740	0.387	1.223	3.673	1.001	0.122	0.655	1.021	1.538	1.995	nan	3.303	3.513	1.401	3.214	3.382	1.272	2.052	1.527	1.796	2.765	2.188	0.775	0.985	1.133	1.418	2.262	9.424	0.619	0.369	1.073	1.760	0.274	1.230	0.703	1.223	2.694	0.331	0.517	3.301
5698	chr3	177305528	177341565	+	0	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	163837	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA	1.369	2.841	1.612	1.994	3.445	1.731	0.408	2.897	0.414	1.531	0.625	0.966	1.980	0.066	0.131	0.958	1.332	2.084	6.726	1.291	1.315	5.588	3.285	0.337	0.340	0.616	1.046	3.440	1.989	0.731	0.338	0.448	0.791	0.878	1.111	0.472	1.083	2.060	1.044	0.651	0.278	0.133	0.186	0.408	0.966	0.087	1.544	0.481	0.235
6666	chr6	23625791	23660845	+	0	NA	Intergenic	Intergenic	-483096	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding	2.458	1.026	nan	2.369	2.664	1.321	1.021	0.080	0.110	0.328	0.181	4.388	nan	0.081	0.111	0.479	0.312	0.362	nan	4.910	5.764	nan	1.755	0.286	0.224	1.418	1.714	0.295	0.351	1.843	1.300	0.153	0.265	1.064	0.819	0.423	1.378	1.698	1.051	0.197	0.316	0.283	0.817	1.021	4.388	0.521	0.365	0.050	0.498
3716	chr18	30457624	30462871	+	0	NA	Intergenic	Intergenic	-107273	NM_020805	57565	Hs.446164	NM_020805	ENSG00000197705	KLHL14	-	kelch like family member 14	protein-coding	nan	1.124	1.054	1.034	0.402	0.152	0.354	0.071	0.061	0.148	0.124	0.912	0.774		0.055	0.381	0.234	2.505	1.620	0.823	0.687	0.813	0.313	0.152	0.072	0.052	0.143	nan	2.304	0.381	0.218	0.167	0.151	7.578	10.938	0.189	0.416	1.714	1.377	0.042	0.025	3.653	0.091	0.354	0.912	0.255	0.078	0.019	0.104
5579	chr3	140945591	140960150	+	0	NA	intron (NM_001282728, intron 1 of 6)	intron (NM_001282728, intron 1 of 6)	2203	NM_001037172	92370	Hs.657887	NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding	1.854	nan	nan	1.116	1.804	1.023	0.743	0.441	0.166	1.144	0.593	1.203	1.566	0.305	0.051	0.979	1.354	0.896	1.273	2.381	1.988	nan	2.371	1.352	1.267	1.109	nan	1.487	nan	nan	1.797	0.948	1.485	2.025	1.909	0.680	0.953	3.304	1.522	3.022	1.557	0.545	0.285	0.743	1.203	0.334	1.099	0.271	0.328
7307	chr7	66482563	66490691	+	0	NA	intron (NM_018264, intron 6 of 15)	L2c|LINE|L2	24835	NR_134540	55253	Hs.520917	NM_018264	ENSG00000198874	TYW1	RSAFD1|TYW1A|YPL207W	tRNA-yW synthesizing protein 1 homolog	protein-coding	nan	nan	nan	0.748	0.324	0.359	0.125	0.215	0.079	0.732	0.359	0.434	0.361	0.093	0.181	0.933	1.264	0.493	0.436	0.639	0.977	4.897	1.678	0.452	0.416	0.897	1.066	1.363	0.756	0.951	0.597	0.258	0.299	0.481	1.956	0.420	0.895	4.692	2.164	0.034	0.196	0.245	1.004	0.125	0.434	0.567	5.988	0.061	0.287
3014	chr16	725337	731714	+	0	NA	TTS (NM_001278720)	TTS (NM_001278720)	1252	NR_136337	105371184	Hs.121180	NR_136337	ENSG00000260394	LOC105371184	LA16c-313D11.9	uncharacterized LOC105371184	pseudo	2.758	nan	2.223	3.576	2.780	1.566	1.503	0.667	0.104	1.919	0.573	4.314	7.390	1.552	0.063	2.439	3.219	0.823	1.476	3.350	2.753	nan	2.519	3.186	3.321	1.308	nan	3.593	5.320	2.103	2.010	1.304	2.908	3.877	2.790	1.629	2.143	2.768	1.479	5.786	11.344	0.702	0.812	1.503	4.314	0.855	1.425	1.985	0.891
866	chr1	216393517	216398183	+	0	NA	intron (NM_007123, intron 14 of 20)	MLT1D|LTR|ERVL-MaLR	150043	NR_125993	102723833	Hs.232072	NR_125992	ENSG00000233620	LOC102723833	-	uncharacterized LOC102723833	ncRNA	1.143	1.087	1.555	0.730	1.495	1.307	0.428	0.194	0.034	0.890	0.478	0.697	nan	0.187	0.119	0.719	0.759	11.232	12.871	1.389	1.551	nan	0.182	1.981	1.987	0.713	nan	0.771	1.149	0.545	0.464	0.338	0.726	3.330	2.875	0.808	2.076	1.134	0.834		0.209	0.914	0.290	0.428	0.697	0.316	0.239	0.318	0.399
1453	chr11	62618582	62631664	+	0	NA	intron (NM_001012664, intron 1 of 9)	AluJb|SINE|Alu	1639	NM_002394	6520	Hs.502769	NM_002394	ENSG00000168003	SLC3A2	4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE	solute carrier family 3 member 2	protein-coding	nan	2.327	2.075	3.013	3.014	1.329	2.108	0.825	0.124	1.992	1.155	2.726	4.931	3.493	0.189	6.754	7.263	2.754	4.232	6.125	5.695	4.804	2.225	5.807	6.281	3.874	5.378	4.660	6.272	6.486	7.443	4.169	7.467	4.557	4.512	6.729	7.658	2.391	1.305	1.690	2.847	0.830	1.375	2.108	2.726	0.989	1.116	2.341	3.162
5454	chr3	108474169	108479758	+	0	NA	promoter-TSS (NM_032579)	promoter-TSS (NM_032579)	-833	NM_032579	84666	Hs.307047	NM_032579	ENSG00000163515	RETNLB	FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2	resistin like beta	protein-coding	nan	nan	0.529	0.555	2.733	1.375	0.809	0.162	0.193	0.029	0.086	4.645	0.472	0.019	0.031	0.362	0.116	0.182	0.246	2.206	2.539	18.346	6.336	0.272	0.196	0.092	0.183	3.628	2.260	0.747	0.360	0.100	0.059	0.114	0.171	0.199	0.233	0.750	0.604	0.289	0.223	0.035	0.885	0.809	4.645	0.051		0.018	0.110
5118	chr21	38737206	38744096	+	0	NA	intron (NM_001347723, intron 1 of 10)	intron (NM_001347723, intron 1 of 10)	792	NM_101395	1859	Hs.368240	NM_001396	ENSG00000157540	DYRK1A	DYRK|DYRK1|HP86|MNB|MNBH|MRD7	dual specificity tyrosine phosphorylation regulated kinase 1A	protein-coding	6.605	3.581	8.167	4.711	5.930	3.164	5.021	4.637	0.377	1.958	0.891	7.003	11.380	5.435	0.123	6.671	6.349	8.051	13.231	7.951	7.865	4.240	2.598	17.518	17.035	3.899	4.811	5.989	10.868	10.117	8.368	5.140	10.808	4.704	4.920	10.479	6.418	nan	1.238	3.811	5.786	1.662	4.267	5.021	7.003	0.720	3.329	2.393	2.840
7363	chr7	82284384	82290979	+	0	NA	Intergenic	Intergenic	-214559	NM_001302890	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding	1.126	0.718	3.966	0.079	0.197	0.171	0.241	0.080	0.024	0.308	0.364	0.018	0.233	0.017	0.160	0.507	0.197	0.143	0.251	0.313	0.346	0.304	0.130	0.175	0.092	7.215	7.701	0.199	0.197	0.519	0.579	0.119	0.219	0.101	0.166	0.787	nan	0.537	0.508	0.093	0.108	0.028	0.059	0.241	0.018	0.074	0.039	0.045	0.245
770	chr1	200978870	201002743	+	0	NA	intron (NM_017596, intron 1 of 33)	intron (NM_017596, intron 1 of 33)	2022	NM_001252103	23046	Hs.169182	NM_017596	ENSG00000116852	KIF21B	-	kinesin family member 21B	protein-coding	1.384	1.747	1.654	0.204	0.944	0.553	0.781	0.122	0.096	0.390	0.297	0.572	1.686	0.200	0.096	0.710	1.102	0.726	1.137	1.875	1.601	1.293	0.512	nan	nan	0.761	1.200	1.003	1.156	0.999	0.711	0.236	0.329	0.468	0.399	2.025	4.528	0.824	0.598	0.954	0.304	0.103	0.076	0.781	0.572	0.122	0.115	0.074	1.058
641	chr1	165561733	165568916	+	0	NA	Intergenic	Intergenic	-13932	NR_026744	400794	Hs.374847	NR_026744	ENSG00000237463	LOC400794	-	uncharacterized LOC400794	ncRNA	2.155	nan	1.998	1.001	1.196	0.446	1.601	0.653	0.158	1.188	0.471	0.655	4.165	0.892	0.172	1.236	1.344	1.150	1.476	2.582	nan	1.914	1.344	0.530	0.508	1.350	1.417	2.035	nan	1.396	1.651	2.112	2.496	4.574	7.710	3.258	3.963	1.037	0.685	0.689	1.347	1.179	0.189	1.601	0.655	0.186	0.546	0.838	0.564
4734	chr2	223286949	223298989	+	0	NA	intron (NM_152386, intron 1 of 4)	intron (NM_152386, intron 1 of 4)	3743	NM_001320833	130367	Hs.210043	NM_152386	ENSG00000163082	SGPP2	SPP2|SPPase2	sphingosine-1-phosphate phosphatase 2	protein-coding	nan	1.863	0.934	1.748	1.163	0.706	0.360	0.068	0.107	1.097	0.682	1.503	nan	0.209	0.139	2.666	3.796	0.658	1.296	1.769	1.599	1.691	0.682	1.416	1.503	0.117	0.166	1.469	nan	0.523	0.254	1.024	2.233	0.239	0.205	0.113	nan	1.066	0.890	0.157	1.724	0.016	0.614	0.360	1.503	0.739	0.050	0.781	0.041
616	chr1	161166457	161173883	+	0	NA	intron (NM_004550, intron 1 of 14)	intron (NM_004550, intron 1 of 14)	1065	NM_004550	4720	Hs.173611	NM_004550	ENSG00000158864	NDUFS2	CI-49	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding	6.396	nan	3.369	1.613	1.701	0.956	4.524	4.480	0.453	1.413	0.945	2.305	4.153	1.620	0.134	2.968	2.729	4.612	6.622	4.852	nan	8.025	3.823	3.155	3.318	7.615	8.809	3.302	nan	2.761	2.483	5.231	9.240	3.474	4.901	4.791	7.789	2.833	1.576	1.698	2.540	0.795	1.323	4.524	2.305	1.055	1.887	6.991	2.612
2962	chr15	77816722	77827419	+	0	NA	intron (NR_135692, intron 1 of 1)	intron (NR_135692, intron 1 of 1)	4133	NR_135692	101929457	Hs.637111	NR_135692	ENSG00000259362	LOC101929457	-	uncharacterized LOC101929457	ncRNA	1.448	0.908	1.259	0.062	0.537	0.267	0.299	0.549	0.070	0.075	0.140	0.224	3.464	0.074	0.066	0.636	0.733	0.290	0.637	0.394	0.416	0.505	0.206	0.316	0.245	0.618	1.056	0.527	0.597	0.721	0.344	1.143	2.634	0.077	0.128	2.814	8.542	0.275	0.300	0.210	0.075	0.026	0.029	0.299	0.224	0.217	0.111	1.992	2.672
6640	chr6	19288785	19313797	+	0	NA	Intergenic	Intergenic	-120580	NR_110860	101928519	Hs.551771	NR_110860		LOC101928519	-	uncharacterized LOC101928519	ncRNA	1.147	nan	0.959	1.259	1.234	0.719	1.082	0.244	0.161	0.401	0.230	3.719	4.510	0.056	0.094	0.455	0.426	0.537	0.847	2.753	3.156	3.017	0.888	0.267	0.232	1.134	1.460	0.828	0.980	0.600	0.403	0.314	0.411	1.935	1.702	0.270	0.458	1.281	0.816	3.374	1.661	0.452	1.214	1.082	3.719	0.565	0.467	0.170	0.074
870	chr1	217802599	217805957	+	0	NA	promoter-TSS (NM_138796)	promoter-TSS (NM_138796)	166	NM_018040	55105	Hs.362343	NM_018040	ENSG00000092978	GPATCH2	CT110|GPATC2|PPP1R30	G-patch domain containing 2	protein-coding	4.515	4.460	4.438	5.397	5.699	3.199	2.606	2.770	0.380	2.843	1.563	3.958	nan	2.712	0.227	6.991	8.657	9.014	13.954	8.567	9.962	9.626	9.657	16.166	18.504	5.095	5.783	6.951	11.755	7.492	6.842	3.974	5.594	7.473	6.106	10.881	7.348	4.000	2.883	1.559	1.476	0.937	0.951	2.606	3.958	0.756	2.111	0.975	1.139
6817	chr6	53785127	53795957	+	0	NA	Intergenic	AluSg|SINE|Alu	-4238	NR_125842	101927189	Hs.453592	NR_125842	ENSG00000236740	LOC101927189	-	uncharacterized LOC101927189	ncRNA	1.125	1.919	nan	0.588	0.537	0.186	1.178	1.504	0.193	0.071	0.091	1.107	2.231	0.050	0.122	0.451	0.313	0.467	1.682	1.110	0.937	0.296	0.179	0.434	0.522	0.959	1.308	4.805	4.521	0.843	0.304	0.248	0.422	0.175	0.222	0.316	0.877	0.952	0.679	5.161	0.284	0.053	0.673	1.178	1.107	0.467	0.066	0.175	0.288
6075	chr4	169982803	170027269	+	0	NA	Intergenic	Intergenic	-73568	NM_032783	84869	Hs.659311	NM_032783	ENSG00000145439	CBR4	SDR45C1	carbonyl reductase 4	protein-coding	nan	nan	nan	0.557	0.491	0.263	0.227	0.606	0.203	0.159	0.099	0.316	0.680	0.064	0.082	0.802	0.744	1.932	nan	0.230	0.240	0.628	0.155	0.474	0.458	0.393	0.581	0.508	0.539	0.355	0.232	0.526	0.832	0.211	0.206	0.502	1.302	0.376	0.292	0.097	0.064	0.043	1.045	0.227	0.316	0.029	0.171	0.711	0.245
5593	chr3	145870253	145880927	+	0	NA	intron (NM_182943, intron 1 of 19)	intron (NM_182943, intron 1 of 19)	3692	NM_000935	5352	Hs.477866	NM_000935	ENSG00000152952	PLOD2	BRKS2|LH2|TLH	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein-coding	4.118	nan	nan	2.113	2.994	1.564	1.378	3.833	0.469	1.940	1.386	0.809	4.527	0.090	0.087	0.399	0.836	4.368	6.338	3.322	3.193	nan	2.833	2.438	2.393	4.221	nan	2.155	nan	nan	4.992	1.305	2.758	1.785	1.480	1.907	2.261	1.719	1.309	0.275	0.105	0.365	1.725	1.378	0.809	0.270	1.213	0.630	0.994
2903	chr15	63367686	63373290	+	0	NA	Intergenic	Intergenic	29852	NM_001018008	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding	1.095	1.206	nan	0.034	0.284	0.199	0.412	1.071	0.057	0.140	0.111	0.084	0.491	0.014	0.065	0.490	0.305	8.484	1.467	0.347	0.322	nan	0.195	1.011	1.085	0.395	0.913	0.189	0.317	0.804	0.583	0.552	1.097	0.183	0.202	0.525	1.540	0.348	0.312	0.065	0.095	0.051	0.056	0.412	0.084	0.191	0.339	0.248	0.218
4934	chr20	34327340	34337186	+	0	NA	Intergenic	Intergenic	-2005	NM_004902	9584	Hs.282901	NM_004902	ENSG00000131051	RBM39	CAPER|CAPERalpha|FSAP59|HCC1|RNPC2	RNA binding motif protein 39	protein-coding	4.425	4.786	3.816	5.019	4.442	2.399	3.745	3.717	0.554	2.320	1.058	3.751	7.728	4.150	0.198	8.834	7.972	6.626	8.811	5.620	nan	7.872	5.954	13.138	14.410	4.582	5.507	7.008	10.521	10.323	10.318	6.044	9.337	4.953	6.031	7.641	nan	1.949	1.214	2.491	3.088	1.005	2.191	3.745	3.751	1.569	2.136	2.354	2.889
2165	chr12	118151238	118177910	+	0	NA	intron (NM_173598, intron 4 of 19)	L1ME2|LINE|L1	241454	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding	nan	nan	0.754	0.082	0.286	0.102	0.214	0.068	0.096	0.134	0.141	0.342	0.529	0.062	0.101	0.319	0.223	0.135	0.191	nan	nan	nan	0.116	0.240	0.285	0.118	0.215	nan	nan	0.623	0.643	0.183	0.144	0.104	0.193	0.159	0.250	nan	0.593	3.920	0.280	0.064	0.089	0.214	0.342	0.145	0.049	0.052	0.046
2347	chr13	75957828	75961108	+	0	NA	intron (NM_014832, intron 1 of 20)	intron (NM_014832, intron 1 of 20)	96836	NM_001286658	9882	Hs.210891	NM_014832	ENSG00000136111	TBC1D4	AS160|NIDDM5	TBC1 domain family member 4	protein-coding	nan	0.991	0.725	0.738	2.733	1.170	0.317	0.124	0.194	1.289	0.860	0.879	2.485	0.099	0.094	4.251	5.366	0.544	0.544	1.139	1.874	16.723	13.326	0.089	0.174	0.192	0.227	1.332	1.283	nan	0.195	1.653	3.189	2.383	1.755	0.457	nan	1.776	0.787		0.867	0.085	0.195	0.317	0.879	0.028	0.155	1.586	0.113
5096	chr21	34481525	34491856	+	0	NA	intron (NR_109961, intron 2 of 2)	intron (NR_109961, intron 2 of 2)	9316	NR_109961	101928107	Hs.382669	NR_109961	ENSG00000226527	LOC101928107	-	uncharacterized LOC101928107	ncRNA	1.600	0.560	0.890	0.419	0.378	0.171	0.295	0.101	0.141	0.045	0.056	0.149	0.635	0.084	0.040	6.586	7.757	2.945	1.968	0.727	0.629	0.055	0.098	2.339	2.125	0.225	0.383	1.763	1.797	2.664	2.847	1.894	1.922	0.044	0.064	0.303	0.551	nan	0.518	0.054	0.093	0.009	0.181	0.295	0.149	0.806	0.033	0.552	0.167
777	chr1	201883458	201915718	+	0	NA	intron (NM_012134, intron 1 of 2)	L2c|LINE|L2	16128	NM_012134	25802	Hs.519075	NM_012134	ENSG00000163431	LMOD1	1D|64kD|D1|SM-LMOD|SMLMOD	leiomodin 1	protein-coding	2.028	1.368	1.564	0.264	0.499	0.218	0.271	0.516	0.210	0.155	0.147	0.218	0.294	0.076	0.091	0.414	0.391	0.405	0.585	0.647	0.775	0.653	0.224	nan	nan	0.605	1.025	0.753	0.910	1.276	1.026	0.186	0.263	0.249	0.253	2.669	9.708	0.552	0.526	0.101	0.253	0.059	0.470	0.271	0.218	0.369	0.081	0.089	3.465
8252	chr9	117256118	117268626	+	0	NA	intron (NM_015404, intron 1 of 11)	intron (NM_015404, intron 1 of 11)	3123	NM_001083885	25861	Hs.93836	NM_015404	ENSG00000095397	WHRN	CIP98|DFNB31|PDZD7B|USH2D|WI	whirlin	protein-coding	2.133	2.271	nan	2.974	1.234	0.615	2.920	0.300	0.078	1.484	0.612	2.778	9.125	0.969	0.087	0.283	0.298	0.580	0.977	4.456	4.729	2.480	0.907	0.722	0.726	0.857	1.168	3.976	nan	1.659	1.179	0.775	1.581	3.929	3.070	0.553	0.994	nan	1.640	7.624	1.762	0.995	0.069	2.920	2.778	0.937	1.709	0.863	0.138
6129	chr5	1289186	1302213	+	0	NA	promoter-TSS (NM_001193376)	promoter-TSS (NM_001193376)	-537	NM_001193376	7015	Hs.492203	NM_198253	ENSG00000164362	TERT	CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT	telomerase reverse transcriptase	protein-coding	0.640	1.060	2.753	0.846	0.767	0.369	0.343	0.221	0.137	0.456	0.190	1.652	0.736	0.499	0.089	5.554	4.557	0.216	nan	8.936	6.922	2.774	0.772	0.276	0.325	0.232	0.528	nan	4.489	nan	0.762	0.530	0.432	0.748	0.645	0.207	0.492	3.186	nan	2.375	2.755	0.108	0.187	0.343	1.652	0.595	1.249	0.168	0.170
5747	chr3	183950587	183955840	+	0	NA	intron (NM_138345, intron 7 of 18)	intron (NM_138345, intron 7 of 18)	2009	NM_001320373	90113	Hs.584997	NM_138345	ENSG00000145198	VWA5B2	-	von Willebrand factor A domain containing 5B2	protein-coding	3.011	1.525	1.515	0.363	0.594	0.275	0.098	0.089	0.061	0.700	0.244	0.240	1.071	0.041	0.087	1.013	1.121	0.171	0.439	1.605	1.204	1.481	0.576	0.170	0.198	0.474	1.274	0.626	0.870	6.654	7.386	1.325	1.454	1.164	2.426	0.767	0.919	0.833	0.479	0.167	0.178	0.361	1.769	0.098	0.240	3.409	0.299	1.027	0.750
3968	chr19	12831523	12839031	+	0	NA	promoter-TSS (NM_001136195)	promoter-TSS (NM_001136195)	-467	NM_001136195	30000	Hs.416049	NM_013433	ENSG00000105576	TNPO2	IPO3|KPNB2B|TRN2	transportin 2	protein-coding	5.964	2.320	3.385	3.047	2.970	1.325	3.620	1.680	0.320	1.927	0.939	4.020	1.937	3.464	0.113	2.600	3.460	4.016	5.712	6.723	5.927	8.051	2.642	7.836	7.921	4.294	6.401	5.318	7.382	7.627	8.912	1.153	2.381	5.025	5.126	7.143	6.771	3.741	1.958	3.315	1.910	1.255	1.225	3.620	4.020	1.424	1.814	1.265	3.154
1685	chr11	118121876	118123879	+	0	NA	intron (NR_104405, intron 1 of 4)	intron (NR_104405, intron 1 of 4)	206	NR_104404	196264	Hs.15396	NM_198275	ENSG00000160588	MPZL3	-	myelin protein zero like 3	protein-coding	2.697	4.511	4.428	8.857	5.817	3.836	6.426			3.434	1.834	6.261	13.528	1.508	0.200	9.179	nan	5.413	8.106	12.715	11.738	13.979	9.610	18.870	19.307	1.853	nan	15.493	18.929	7.660	6.876	15.784	21.425	11.048	10.440	5.884	6.384	7.447	4.656	5.896	3.769	1.429	3.418	6.426	6.261	1.206	0.506	7.943	1.167
1891	chr12	30843235	30854484	+	0	NA	promoter-TSS (NM_006390)	promoter-TSS (NM_006390)	70	NM_006390	10526	Hs.505136	NM_006390	ENSG00000133704	IPO8	RANBP8	importin 8	protein-coding	1.953	nan	2.231	2.991	1.097	0.557	0.796	0.319	0.072	0.559	0.352	1.149	3.024	0.896	0.129	0.956	1.393	1.541	2.068	3.147	2.723	2.608	0.957	3.329	3.114	1.455	1.910	2.098	2.630	1.384	1.347	0.726	1.566	8.090	8.660	1.159	1.469	2.254	1.389	0.424	0.939	1.854	0.925	0.796	1.149	0.648	2.926	0.413	0.318
183	chr1	32244422	32256375	+	0	NA	Intergenic	Intergenic	-20734	NM_001294335	576	Hs.524138	NM_001703	ENSG00000121753	ADGRB2	BAI2	adhesion G protein-coupled receptor B2	protein-coding	1.569	nan	1.556	0.950	0.748	0.447	0.896	0.573	0.067	0.261	0.264	0.490	2.396	0.877	0.068	2.126	2.687	10.387	5.346	1.647	1.430	nan	0.288	1.581	1.669	0.874	1.534	0.607	1.148	nan	1.715	1.375	2.355	0.248	0.345	1.431	1.973	0.601	nan	0.468	0.775	0.087	0.120	0.896	0.490	0.471	0.453	1.402	0.353
5203	chr22	23842816	23886144	+	0	NA	Intergenic	AluY|SINE|Alu	-35313	NR_110539	388882	Hs.542766	NR_110539	ENSG00000178248	LINC01658	-	long intergenic non-protein coding RNA 1658	ncRNA	1.710	nan	0.712	0.761	5.802	2.972	3.051	0.329	0.175	0.609	0.374	4.286	5.450	0.843	0.074	2.662	2.933	1.725	3.024	2.222	2.558	1.964	1.133	1.920	2.122	1.698	2.098	1.014	1.544	1.455	1.207	1.974	3.174	1.922	2.304	1.269	1.562	2.036	1.311	1.483	1.462	1.074	1.383	3.051	4.286	0.813	1.163	2.715	0.396
2544	chr14	34398526	34427361	+	0	NA	intron (NM_001308103, intron 1 of 4)	intron (NM_001308103, intron 1 of 4)	7089	NM_001308103	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding	2.232	1.043	1.014	1.427	1.494	0.673	1.416	0.919	0.279	0.206	0.354	0.846	2.932	0.128	0.107	1.046	1.328	2.845	3.243	1.316	1.195	0.154	0.091	5.342	5.690	1.841	2.697	1.421	1.845	1.442	1.214	3.002	6.643	1.029	1.226	0.721	1.345	0.921	0.724	3.235	1.313	0.240	0.272	1.416	0.846	0.287	1.864	3.367	0.282
362	chr1	68344326	68364292	+	0	NA	intron (NR_040077, intron 1 of 9)	intron (NR_040077, intron 1 of 9)	-55154	NM_018841	55970	Hs.431101	NM_018841	ENSG00000172380	GNG12	-	G protein subunit gamma 12	protein-coding	1.190	1.000	nan	0.429	1.684	0.911	1.250	0.248	0.105	0.228	0.115	1.003	0.683	0.038	0.111	1.162	0.863	0.945	1.017	0.823	0.947	4.750	1.481	0.232	0.275	nan	nan	0.935	nan	0.497	0.370	0.370	0.543	0.403	0.638	0.298	0.759	1.560	0.952	0.008	0.236	0.062	0.108	1.250	1.003	0.199	0.301	0.089	0.211
7002	chr6	138798106	138831362	+	0	NA	intron (NM_001144060, intron 2 of 7)	intron (NM_001144060, intron 2 of 7)	5845	NM_001144060	57224	Hs.652741	NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding	1.336	1.107	1.270	0.536	0.456	0.231	0.496	0.086	0.113	0.136	0.136	0.353	0.603	0.147	0.141	0.483	0.377	1.447	5.565	0.852	0.860	nan	0.703	0.327	0.309	0.834	1.169	0.589	0.818	1.009	0.730	0.351	0.723	0.802	1.116	2.159	nan	0.843	0.601	0.202	0.605	0.156	1.359	0.496	0.353	0.068	0.040	0.405	1.699
1379	chr11	34605938	34613383	+	0	NA	Intergenic	Intergenic	-32928	NM_012153	26298	Hs.653859	NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding	0.651	1.311	nan	0.189	0.596	0.324	0.379	0.201	0.108	0.183	0.184	1.084	1.523	0.014	0.126	1.235	1.279	6.985	6.163	0.401	0.724	2.934	0.797	0.662	0.732	0.344	0.550	0.348	0.322	0.469	0.173	0.573	0.721	0.185	0.237	0.135	nan	0.717	0.622	0.105	0.116		0.032	0.379	1.084	0.017	0.031	0.096	0.016
6397	chr5	106876930	106914233	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	111015	NM_001962	1946	Hs.288741	NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding	1.204	1.676	0.953	0.170	0.935	0.616	0.285	0.170	0.036	0.224	0.204	0.037	0.836	0.171	0.107	0.307	0.265	1.674	6.632	0.494	0.529	0.901	0.268	0.204	0.197	2.041	2.574	0.553	0.613	0.580	0.314	0.301	0.490	1.811	2.617	0.283	0.548	0.498	0.408	0.057	0.236	0.361	0.189	0.285	0.037	0.159	0.627	0.321	0.133
4598	chr2	173839349	174091562	+	0	NA	intron (NM_133646, intron 2 of 11)	intron (NM_133646, intron 2 of 11)	24890	NM_016653	51776	Hs.444451	NM_016653	ENSG00000091436	MAP3K20	AZK|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk	mitogen-activated protein kinase kinase kinase 20	protein-coding	1.263	0.963	0.964	0.147	0.408	0.207	0.373	0.614	0.128	0.246	0.186	0.290	0.493	3.544	0.139	0.372	0.278	0.649	0.968	0.333	0.377	0.427	0.182	0.397	0.402	1.487	1.728	1.004	1.143	0.565	0.370	0.206	0.338	0.196	0.346	0.826	1.978	0.572	0.391	1.929	0.078	0.042	0.129	0.373	0.290	0.101	0.108	0.073	0.439
6420	chr5	121126878	121145279	+	0	NA	Intergenic	Intergenic	-51572	NM_177478	94033	Hs.105324	NM_177478	ENSG00000181867	FTMT	MTF	ferritin mitochondrial	protein-coding	nan	0.736	0.609	0.106	0.136	0.052	0.049	0.115	0.052	0.110	0.085	0.058	0.168	0.053	0.128	0.217	0.175	5.219	4.754	0.119	0.164	0.088	0.069	0.154	0.163	0.172	0.248	0.152	0.179	0.422	0.158	0.079	0.103	0.152	0.142	0.210	0.370	0.108	0.214	0.015	0.053	0.026	0.034	0.049	0.058	0.015	0.036	0.054	0.053
3798	chr18	47678328	47722286	+	0	NA	intron (NM_001080467, intron 1 of 39)	MLT2B2|LTR|ERVL	21144	NM_001080467	4645	Hs.720076	NM_001080467	ENSG00000167306	MYO5B	-	myosin VB	protein-coding	nan	0.995	1.406	0.455	0.357	0.193	0.639	0.046	0.051	0.109	0.069	0.890	2.292	0.039	0.064	0.548	0.712	0.534	1.249	1.138	1.016	0.431	0.155	0.711	0.694	0.186	0.267	0.907	1.146	0.347	0.190	0.625	1.160	2.537	3.400	0.186	nan	0.873	1.063	0.331	0.317	1.322	1.311	0.639	0.890	0.060	0.025	0.695	0.062
407	chr1	94309827	94314450	+	0	NA	promoter-TSS (NR_030621)	promoter-TSS (NR_030621)	-250	NR_030621	100126348		NR_030621	ENSG00000211575	MIR760	MIRN760|hsa-mir-760|mir-760	microRNA 760	ncRNA	nan	nan	6.008	3.155	5.972	3.120	5.212	2.138	0.488	1.867	1.137	5.348	12.388	5.434	0.169	3.704	5.304	2.079	3.540	10.584	nan	10.968	4.555	9.918	10.411	5.392	nan	13.103	20.587	nan	7.341	1.910	5.088	4.841	3.078	7.004	6.368	3.821	2.212	3.644	3.708	0.678	3.299	5.212	5.348	0.651	2.553	1.989	3.117
2496	chr14	24546766	24565374	+	0	NA	Intergenic	Intergenic	-2238	NM_006177	4901	Hs.652297	NM_006177	ENSG00000129535	NRL	D14S46E|NRL-MAF|RP27	neural retina leucine zipper	protein-coding	nan	1.871	2.196	2.088	1.572	0.923	0.954	1.729	0.301	0.607	0.319	1.543	3.020	2.088	0.130	1.098	1.691	1.085	1.770	2.235	2.164	3.241	1.032	2.329	2.379	2.478	3.237	3.176	nan	8.474	7.663	1.284	2.076	1.620	1.390	1.429	5.224	1.473	0.804	3.493	2.033	0.544	1.693	0.954	1.543	0.477	1.081	1.118	3.604
3686	chr18	21571237	21597634	+	0	NA	intron (NR_110796, intron 3 of 5)	intron (NR_110796, intron 3 of 5)	-9949	NM_001135993	125488	Hs.128576	NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding	1.739	2.238	2.459	1.571	1.775	1.050	2.520	0.762	0.201	0.684	0.270	4.230	3.785	0.472	0.073	2.207	3.162	1.808	nan	3.172	2.330	10.299	4.868	0.894	1.001	0.407	0.673	1.641	1.624	0.860	0.817	0.813	1.568	4.614	6.176	1.042	2.194	1.894	1.470	1.050	1.469	1.263	0.730	2.520	4.230	0.368	0.777	0.681	0.549
5351	chr3	30180440	30191543	+	0	NA	Intergenic	Intergenic	-210344	NR_046556	100873977	Hs.581453	NR_046556	ENSG00000235593	RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA	0.659	0.659	0.960	0.080	0.162	0.115	0.081	0.536	0.029	0.057	0.127	0.076	0.256	0.049	0.098	0.242	0.160	0.513	0.637	0.162	0.221	0.686	0.202	0.109	0.080	4.304	nan	0.231	0.224	0.413	0.315	0.071	0.182	0.255	0.338	0.151	0.197	0.569	0.396	0.045	0.037	0.026	0.058	0.081	0.076	0.087	0.054	0.036	0.033
4511	chr2	137133356	137146527	+	0	NA	Intergenic	Intergenic	-264216	NM_003467	7852	Hs.593413	NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS	C-X-C motif chemokine receptor 4	protein-coding	nan	0.780	nan	0.388	0.560	0.353	0.429	0.106	0.049	0.190	0.150	0.344	1.192	0.082	0.073	0.386	0.302	0.416	0.520	0.691	0.665	2.277	1.005	0.115	0.158	4.405	4.423	1.298	nan	1.208	1.428	0.284	0.387	0.502	0.970	0.254	0.610	0.851	0.512	0.913	0.142	0.094	0.043	0.429	0.344	0.309	0.208	0.052	0.142
7844	chr8	102613377	102622015	+	0	NA	intron (NM_001330593, intron 8 of 15)	intron (NM_001330593, intron 8 of 15)	113028	NM_024915	79977	Hs.661088	NM_024915	ENSG00000083307	GRHL2	BOM|DFNA28|ECTDS|TFCP2L3	grainyhead like transcription factor 2	protein-coding	1.325	nan	nan	1.023	1.434	0.927	1.067	0.262	0.130	0.181	0.133	2.382	2.120	0.091	0.055	0.722	1.069	5.585	10.443	3.047	3.081	5.570	2.548	0.587	0.606	0.709	nan	1.921	nan	nan	0.170	0.971	1.904	3.679	3.625	0.150	nan	1.804	1.058	0.401	0.445	0.996	0.222	1.067	2.382		0.877	0.470	0.128
1167	chr10	82159905	82178126	+	0	NA	intron (NM_001243781, intron 1 of 5)	intron (NM_001243781, intron 1 of 5)	773	NM_001243780	84293	Hs.500333	NM_032333	ENSG00000122378	FAM213A	C10orf58|PAMM	family with sequence similarity 213 member A	protein-coding	1.734	1.020	1.864	0.542	0.819	0.459	0.673	0.103	0.064	0.233	0.175	1.767	1.953	0.329	0.065	0.988	1.399	1.017	1.436	2.794	2.859	1.531	0.522	0.599	0.681	0.920	1.252	3.653	4.888	0.988	1.142	0.460	0.949	0.927	0.734	1.689	6.284	0.811	0.572	0.514	0.617	0.319	2.698	0.673	1.767	0.417	0.354	0.461	2.042
1393	chr11	43852089	43858054	+	0	NA	intron (NM_016142, intron 7 of 10)	MLT1J1|LTR|ERVL-MaLR	-47286	NM_139178	221120	Hs.720708	NM_139178	ENSG00000166199	ALKBH3	ABH3|DEPC-1|DEPC1|PCA1|hABH3	alkB homolog 3, alpha-ketoglutaratedependent dioxygenase	protein-coding	nan	0.959	0.766	0.132	0.424	0.165	0.470	0.306		0.393	0.206	0.378	0.384	0.151	0.133	0.647	0.363	0.549	1.762	0.465	0.444	3.463	10.007	0.240	0.294	0.560	1.190	0.229	0.236	0.343	0.164	0.186	0.370	0.314	0.404	1.263	nan	0.472	0.556	0.064	0.076	0.047	0.199	0.470	0.378	0.066	0.105	0.100	0.310
6252	chr5	50254241	50271060	+	0	NA	Intergenic	Intergenic	3371	NR_104653	100287592	Hs.519298	NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA	nan	nan	0.759	0.447	4.016	2.143	5.111	0.106	0.067	2.651	1.317	4.047	13.927	0.543	0.149	0.142	0.102	10.509	9.054	11.404	10.821	nan	1.480	0.083	0.096	0.174	0.330	0.294	0.497	nan	4.917	0.080	0.104	12.288	11.685	0.201	0.299	3.204	1.836	7.393	0.579	3.977	1.103	5.111	4.047	0.184	0.097	0.028	0.132
5490	chr3	116102046	116137614	+	0	NA	intron (NM_002338, intron 1 of 6)	intron (NM_002338, intron 1 of 6)	40959	NR_109998	101926903	Hs.26479	NR_109998	ENSG00000240922	LSAMP-AS1	-	LSAMP antisense RNA 1	ncRNA	1.375	nan	0.909	0.122	1.444	0.793	0.671	0.103	0.117	0.985	0.887	0.232	0.170	0.274	0.081	0.602	0.590	1.401	0.790	0.391	nan	1.335	0.410	0.395	0.428	nan	4.053	0.239	0.256	1.933	1.539	0.114	0.267	1.314	1.491	0.294	0.494	1.433	0.939	0.071	0.082	0.483	0.495	0.671	0.232	0.549	0.069	0.109	0.142
6705	chr6	31618518	31621900	+	0	NA	promoter-TSS (NR_045828).4	promoter-TSS (NR_045828).4	22	NM_001256169	55937	Hs.534468	NM_019101	ENSG00000204444	APOM	G3a|HSPC336|NG20|apo-M	apolipoprotein M	protein-coding	6.629	3.778	nan	8.431	7.286	3.378	5.960	6.146	0.341	2.769	1.232	8.150	15.079	7.252	0.161	8.702	8.628	9.962	14.091	nan	9.591	8.502	6.854	20.407	23.183	4.475	5.532	12.722	16.709	9.260	8.319	5.158	7.887	7.298	9.152	8.078	9.088	4.090	1.966	5.208	4.901	1.543	3.003	5.960	8.150	1.467	3.259	2.309	2.755
5248	chr22	35758038	35781438	+	0	NA	Intergenic	AluSp|SINE|Alu	-7322	NM_002133	3162	Hs.517581	NM_002133	ENSG00000100292	HMOX1	HMOX1D|HO-1|HSP32|bK286B10	heme oxygenase 1	protein-coding	nan	1.049	1.094	0.226	0.669	0.397	0.777	0.704	0.282	0.141	0.113	0.460	0.669	0.815	0.114	1.008	1.301	0.996	nan	0.500	0.541	3.373	0.354	0.862	0.859	0.873	nan	0.837	1.344	2.235	1.527	0.406	0.330	0.914	4.624	1.117	nan	0.778	0.502	0.241	0.201	0.062	0.129	0.777	0.460	0.257	0.903	0.152	0.514
5567	chr3	137892152	137915685	+	0	NA	Intergenic	Intergenic	-2172	NM_001282342	25852	Hs.744868	NM_014154	ENSG00000114098	ARMC8	GID5|HSPC056|S863-2|VID28	armadillo repeat containing 8	protein-coding	2.447	nan	nan	1.558	1.432	0.807	0.824	0.839	0.246	0.978	0.676	1.075	1.615	0.627	0.086	1.887	1.972	1.811	2.559	2.643	2.496	4.934	1.849	3.090	3.370	2.144	2.778	1.572	2.122	nan	3.194	1.397	2.351	0.848	0.850	1.616	2.092	1.472	0.857	0.953	0.865	0.177	0.782	0.824	1.075	0.322	0.587	0.528	0.522
2489	chr14	23759801	23783983	+	0	NA	5' UTR (NM_001276318, exon 1 of 5)	5' UTR (NM_001276318, exon 1 of 5)	165	NM_001276318	90673	Hs.601513	NM_001276318	ENSG00000235194	PPP1R3E	-	protein phosphatase 1 regulatory subunit 3E	protein-coding	nan	2.448	3.490	2.233	1.989	1.080	1.483	1.718	0.247	0.610	0.449	1.489	3.452	1.162	0.131	0.997	1.040	1.748	2.425	3.261	3.095	2.404	0.972	2.869	3.090	2.042	2.610	2.409	nan	3.521	3.387	1.169	1.627	1.901	1.871	7.132	11.297	1.438	0.739	2.091	2.092	0.303	1.031	1.483	1.489	0.572	1.224	0.446	4.378
4948	chr20	36614220	36631298	+	0	NA	intron (NM_014657, intron 8 of 8)	AluSx3|SINE|Alu	39111	NM_014657	9675	Hs.655481	NM_014657	ENSG00000101407	TTI1	KIAA0406|smg-10	TELO2 interacting protein 1	protein-coding	1.240	2.392	0.909	0.237	0.460	0.300	0.396	0.254	0.075	0.175	0.078	0.232	1.167	0.075	0.121	0.593	0.681	0.511	1.128	0.558	nan	1.049	0.766	0.372	0.393	0.404	0.747	0.685	1.097	2.086	1.973	0.402	0.936	0.088	0.134	1.841	nan	0.434	0.241	0.652	0.552	0.017	0.467	0.396	0.232	0.369	0.071	0.862	1.432
6805	chr6	51242981	51265171	+	0	NA	Intergenic	Intergenic	-232592	NR_125840	101927082	Hs.730296	NR_125840		LOC101927082	-	uncharacterized LOC101927082	ncRNA	0.773	0.905	nan	0.318	0.425	0.303	0.335	0.114	0.094	0.078	0.080	0.750	0.637	0.020	0.115	0.693	0.319	5.772	5.990	0.649	0.731	0.126	0.065	0.611	0.696	0.165	0.286	0.394	0.413	0.233	0.071	0.325	0.436	0.459	0.456	0.212	0.363	0.137	0.283	0.032	0.143	0.086	0.107	0.335	0.750	0.005	0.082	0.062	0.066
2509	chr14	29338440	29351094	+	0	NA	Intergenic	Intergenic	-89774	NR_135255	105370424	Hs.375809	NR_135255	ENSG00000257056	LOC105370424	-	uncharacterized LOC105370424	ncRNA	1.588	1.438	0.848	3.146	1.106	0.624	2.695	0.172	0.179	0.719	0.608	1.667	6.604	0.034	0.134	0.217	0.136	0.207	0.247	2.344	3.524	7.996	3.585	0.142	0.179	4.012	4.439	1.827	2.330	0.700	0.249	0.076	0.142	7.093	8.605	0.543	1.027	3.928	1.794	0.106	3.601	1.862	1.856	2.695	1.667	0.199	0.857	0.016	0.249
2955	chr15	75054739	75092861	+	0	NA	promoter-TSS (NM_004383)	promoter-TSS (NM_004383)	-625	NM_004383	1445	Hs.77793	NM_004383	ENSG00000103653	CSK	-	c-src tyrosine kinase	protein-coding	0.902	1.437	1.421	0.395	0.629	0.385	0.732	0.226	0.131	0.298	0.162	0.533	2.813	0.310	0.075	2.749	3.827	2.127	2.934	0.893	0.904	1.136	0.326	0.641	0.570	0.693	1.120	1.133	1.248	0.989	0.757	1.345	1.825	0.367	0.422	0.526	0.836	0.748	0.498	0.202	0.536	0.083	0.168	0.732	0.533	0.163	0.355	0.750	0.165
4919	chr20	31140778	31173315	+	0	NA	intron (NM_001256798, intron 1 of 10)	L2a|LINE|L2	15829	NM_001256798	140688	Hs.516978	NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113|dJ1184F4.2|dJ1184F4.4	nucleolar protein 4 like	protein-coding	2.425	2.959	1.263	0.570	1.224	0.657	1.053	0.205	0.085	0.443	0.272	0.876	2.001	0.680	0.108	1.530	2.775	0.334	0.505	1.457	nan	4.348	1.555	0.885	0.892	0.310	0.611	1.129	1.400	4.253	4.031	0.857	1.258	1.347	1.180	0.553	nan	0.960	0.566	2.510	2.076	0.176	0.914	1.053	0.876	0.851	0.161	0.829	0.202
964	chr1	244208062	244230466	+	0	NA	3' UTR (NM_001278196, exon 2 of 2)	3' UTR (NM_001278196, exon 2 of 2)	2757	NM_006352	10472	Hs.69997	NM_006352	ENSG00000179456	ZBTB18	C2H2-171|MRD22|RP58|TAZ-1|ZNF238	zinc finger and BTB domain containing 18	protein-coding	nan	1.782	nan	1.942	1.623	0.944	1.083	3.672	0.337	1.087	0.467	1.977	2.019	0.368	0.101	0.765	1.155	2.320	1.873	4.839	4.125	2.713	0.668	1.102	1.125	5.213	6.767	1.402	1.860	7.308	9.684	0.383	1.202	2.881	2.475	4.177	6.140	1.167	0.833	0.196	0.514	0.655	1.822	1.083	1.977	0.561	1.275	0.470	0.868
4210	chr2	9768882	9773045	+	0	NA	intron (NM_006826, intron 1 of 5)	CpG-14702	221	NM_006826	10971	Hs.74405	NM_006826	ENSG00000134308	YWHAQ	14-3-3|1C5|HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	4.889	2.847	4.816	4.472	5.505	3.083	6.246	1.946	0.230	3.144	1.282	7.678	17.119	4.723	0.125	5.669	6.001	6.479	8.949	10.152	9.717	7.431	4.679	6.401	6.299	3.516	4.701	8.986	11.627	7.198	8.185	4.465	8.612	3.829	3.807	7.224	5.702	3.736	1.832	3.982	9.368	1.008	3.234	6.246	7.678	2.526	4.318	2.722	2.535
6061	chr4	159912994	160000031	+	0	NA	promoter-TSS (NM_152543)	promoter-TSS (NM_152543)	-179	NM_152543	152940	Hs.415576	NM_152543	ENSG00000164123	C4orf45	-	chromosome 4 open reading frame 45	protein-coding	nan	1.487	0.644	0.236	0.733	0.315	0.305	0.590	0.161	0.224	0.153	0.401	0.469	5.041	0.204	0.228	0.186	0.500	0.614	0.269	0.338	0.846	0.317	0.132	0.141	0.609	0.782	0.410	0.429	0.332	0.170	0.147	0.251	0.344	0.446	0.203	0.338	0.576	0.450	0.015	0.060	0.080	0.191	0.305	0.401	0.027	0.061	0.042	0.071
6661	chr6	21662570	21673813	+	0	NA	intron (NR_015410, intron 1 of 11)	AluSz|SINE|Alu	1516	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA	1.855	1.023	nan	2.633	0.481	0.302	0.601	0.553	0.113	0.042	0.126	1.247	nan	8.250	0.244	0.507	0.368	2.607	nan	3.190	2.359	nan	0.565	11.920	11.659	0.326	0.556	1.268	1.549	0.607	0.280	0.375	0.438	0.513	0.494	0.220	0.362	0.690	0.584	1.696	0.032	0.093	0.288	0.601	1.247	0.069	0.018	0.097	0.045
6948	chr6	125265927	125288363	+	0	NA	intron (NR_026876, intron 1 of 6)	L1MA4A|LINE|L1	-6546	NM_001286398	154214	Hs.12876	NM_152553	ENSG00000146373	RNF217	C6orf172|IBRDC1|OSTL|dJ84N20.1	ring finger protein 217	protein-coding	1.002	1.447	2.497	0.492	0.225	0.164	0.884	0.799	0.115	0.167	0.160	0.518	2.237	0.576	0.114	1.176	1.247	2.770	2.629	1.583	1.527	4.457	1.470	1.614	1.601	0.481	0.734	0.632	0.864	1.427	1.503	0.117	0.319	3.069	2.973	2.460	4.117	0.592	0.477	0.590	0.142	0.763	0.032	0.884	0.518	0.277	0.018	0.040	0.648
935	chr1	235090037	235124787	+	0	NA	Intergenic	Intergenic	-7666	NR_125945	101927851	Hs.520684	NR_125945	ENSG00000238005	LOC101927851	-	uncharacterized LOC101927851	ncRNA	2.503	4.220	3.014	2.315	4.139	2.054	3.345	3.176	0.388	2.237	0.969	2.249	1.866	0.184	0.127	0.837	1.054	1.733	5.946	2.379	2.235	nan	1.190	0.744	0.811	1.094	1.819	nan	4.133	0.671	0.538	0.444	0.496	3.161	3.659	0.601	1.320	nan	1.184	2.601	0.984	1.029	0.609	3.345	2.249	0.265	2.218	0.387	0.445
4192	chr2	5825078	5839018	+	0	NA	promoter-TSS (NR_110580)	promoter-TSS (NR_110580)	-751	NM_003108	6664	Hs.432638	NM_003108	ENSG00000176887	SOX11	MRD27	SRY-box 11	protein-coding	4.252	1.835	0.762	0.060	5.404	2.662	3.193	0.048	0.127	2.644	1.674	2.027	14.521	0.055	0.089	3.905	5.334	0.287	0.683	9.781	7.305	6.340	2.594	0.036	0.039	0.930	1.508	4.899	8.866	5.349	7.062	0.618	0.943	0.583	0.298	3.932	3.794	0.106	0.126	3.408	6.053	0.198	4.892	3.193	2.027	1.488	3.124	0.234	2.228
81	chr1	10993769	11051174	+	0	NA	intron (NM_001170754, intron 5 of 12)	AluSz|SINE|Alu	19623	NM_001170754	148345	Hs.127026	NM_173507	ENSG00000175262	C1orf127	-	chromosome 1 open reading frame 127	protein-coding	1.175	1.073	nan	5.525	0.616	0.301	0.514	0.213	0.188	0.478	0.256	0.894	2.480	0.102	0.091	0.507	0.712	0.374	0.558	2.796	3.205	1.626	0.442	1.601	nan	0.310	nan	10.181	9.022	nan	0.498	0.539	0.605	0.499	0.437	0.500	1.298	1.890	0.917	1.022	1.228	0.147	0.039	0.514	0.894	0.139	0.743	0.222	0.179
1300	chr11	10877144	10882427	+	0	NA	promoter-TSS (NM_021211)	promoter-TSS (NM_021211)	21	NR_034137	729013	Hs.726427	NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA	4.672	nan	6.548	9.883	7.423	4.326	3.880	3.500	0.368	4.148	1.885	11.231	17.270	4.155	0.127	nan	9.009	7.361	12.040	17.550	15.797	12.182	6.249	18.309	18.598	6.522	7.515	5.806	8.874	7.834	7.854	5.616	10.267	9.208	10.817	4.788	4.933	4.649	nan	7.380	6.849	2.039	2.395	3.880	11.231	0.665	1.920	4.420	1.496
2598	chr14	55795172	55816213	+	0	NA	intron (NM_152231, intron 1 of 1)	intron (NM_152231, intron 1 of 1)	66820	NM_152231	55030	Hs.525348	NM_017943	ENSG00000178974	FBXO34	CGI-301|Fbx34	F-box protein 34	protein-coding	nan	nan	1.450	0.821	0.397	0.210	0.219	0.295	0.134	0.209	0.190	0.250	0.406	0.098	0.150	0.315	0.277	0.514	0.991	0.513	0.563	0.530	0.169	0.662	0.585	0.674	0.836	1.056	1.269	2.982	2.172	0.249	0.373	3.180	2.898	0.634	1.505	nan	0.760	0.097	0.144	1.189	0.791	0.219	0.250	0.060	0.208	0.047	0.541
7433	chr7	111029211	111035882	+	0	NA	intron (NM_001244606, intron 4 of 6)	intron (NM_001244606, intron 4 of 6)	169801	NM_032549	83943	Hs.655722	NM_032549	ENSG00000184903	IMMP2L	IMMP2L-IT1|IMP2|IMP2-LIKE	inner mitochondrial membrane peptidase subunit 2	protein-coding	nan	0.558	0.664	0.703	0.181	0.216	0.181	1.793	0.098	1.546	0.656	0.369	0.299	0.729	0.169	0.607	0.248	0.224	0.611	0.319	0.436	5.879	6.872	0.229	0.274	0.346	0.601	0.498	0.505	0.298	0.246	0.120	0.230	0.416	0.219	0.402	1.017	1.402	1.090	0.201	0.106	0.014	0.059	0.181	0.369	0.086	0.057	0.030	0.146
204	chr1	36232640	36236754	+	0	NA	intron (NM_001330490, intron 1 of 24)	MER96B|DNA|hAT	854	NM_001330490	63967	Hs.175613	NM_022111	ENSG00000092853	CLSPN	-	claspin	protein-coding	4.640	nan	3.873	6.717	2.993	1.904	2.142	1.751	0.359	2.803	1.491	6.654	8.662	2.977	0.164	4.218	3.313	4.155	5.301	7.782	6.556	nan	2.193	5.731	5.358	3.829	5.145	10.343	15.809	nan	5.234	3.632	5.256	2.619	2.877	5.886	4.824	2.718	nan	3.573	2.403	0.372	1.756	2.142	6.654	0.450	1.745	1.475	1.435
5190	chr22	20099254	20107021	+	0	NA	promoter-TSS (NM_001278639)	promoter-TSS (NM_001278639)	-324	NM_001278639	5902	Hs.24763	NM_002882	ENSG00000099901	RANBP1	HTF9A	RAN binding protein 1	protein-coding	3.998	nan	2.430	1.656	3.765	2.160	3.709	1.063	0.125	0.976	0.544	3.518	3.192	1.730	0.076	3.282	2.963	3.826	4.945	4.006	3.595	3.028	1.469	5.527	5.386	2.889	4.407	3.284	5.459	5.362	7.019	1.923	3.371	4.146	5.031	4.131	3.343	4.715	2.876	0.821	1.293	1.020	0.943	3.709	3.518	1.005	1.546	0.551	1.095
814	chr1	205241603	205295020	+	0	NA	Intergenic	AluY|SINE|Alu	22608	NM_030952	81788	Hs.497512	NM_030952	ENSG00000163545	NUAK2	SNARK	NUAK family kinase 2	protein-coding	1.549	2.966	1.584	1.090	1.055	0.524	1.379	0.972	0.298	0.761	0.546	1.697	3.829	3.053	0.207	0.675	0.785	1.664	5.332	2.139	2.372	1.533	0.423	nan	nan	0.421	0.817	3.020	3.414	0.856	0.623	0.297	0.316	0.823	0.752	0.856	1.929	1.480	0.870	3.021	2.293	0.246	0.419	1.379	1.697	0.227	1.016	0.087	0.298
4611	chr2	177035486	177044060	+	0	NA	non-coding (NR_110464, exon 4 of 4)	non-coding (NR_110464, exon 4 of 4)	3084	NR_110458	401022	Hs.98661	NR_033979	ENSG00000224189	HAGLR	HOXD-AS1|Mdgt	HOXD antisense growth-associated long non-coding RNA	ncRNA	1.967	1.452	0.874	1.348	2.145	1.016	3.770	0.053	0.131	1.517	0.742	5.465	3.929	0.199	0.076	4.755	5.969	0.588	1.101	1.244	1.218	2.637	1.098	3.509	3.619	0.806	1.317	2.426	3.139	7.159	10.427	3.331	6.497	2.160	1.453	0.315	0.575	1.376	0.571	3.572	1.120	0.356	1.943	3.770	5.465	0.445	0.014	3.372	0.044
7242	chr7	31565408	31595281	+	0	NA	intron (NM_001257968, intron 1 of 14)	LTR19-int|LTR|ERV1	11268	NM_001257968	223075	Hs.224269	NM_194300	ENSG00000180347	CCDC129	-	coiled-coil domain containing 129	protein-coding	1.040	1.230	1.320	0.462	0.889	0.424	0.081	0.136	0.092	0.226	0.180	0.652	0.522	0.043	0.175	3.269	4.656	7.346	6.881	0.525	nan	0.454	0.279	0.826	0.936	0.478	nan	nan	nan	0.349	0.165	1.478	2.150	0.478	0.700	0.184	nan	1.046	0.699	0.031	0.069	0.092	0.042	0.081	0.652	0.013	0.017	1.111	0.041
2492	chr14	23898937	23909299	+	0	NA	intron (NM_000257, intron 1 of 39)	intron (NM_000257, intron 1 of 39)	777	NM_000257	4625	Hs.719946	NM_000257	ENSG00000092054	MYH7	CMD1S|CMH1|MPD1|MYHCB|SPMD|SPMM	myosin heavy chain 7	protein-coding	nan	0.757	0.653	0.123	0.233	0.144	4.603	0.122	0.110	0.016	0.029	0.191	0.310	0.084	0.052	0.197	0.171	0.247	0.219	1.071	0.834	0.213	0.093	0.187	0.237	0.225	0.556	0.130	nan	0.641	0.547	0.275	0.378	0.127	0.068	0.266	0.608	0.470	0.525	0.242	0.045	0.019	0.046	4.603	0.191	0.075	0.030	0.114	0.143
5192	chr22	20724277	20729421	+	0	NA	Intergenic	L1M3de|LINE|L1	-21556	NM_003426	7625	Hs.517418	NM_003426	ENSG00000185252	ZNF74	COS52|ZFP520|ZNF520|hZNF7	zinc finger protein 74	protein-coding	1.315	nan	2.143	3.824	0.278	0.186	0.558	0.074	0.071	2.897	0.908	3.531	4.630		0.099	3.080	4.236	0.200	0.434	3.132	2.597	8.449	2.673	1.056	0.883	0.297	0.474	9.053	8.984	0.364	0.284	1.306	1.897	5.230	6.296	0.132	0.310	8.496	4.421	2.892	2.957	2.108	0.047	0.558	3.531	0.849	2.962	1.620	0.025
884	chr1	224031578	224035164	+	0	NA	exon (NM_001031685, exon 1 of 18)	exon (NM_001031685, exon 1 of 18)	303	NM_001031685	7159	Hs.523968	NM_005426	ENSG00000143514	TP53BP2	53BP2|ASPP2|BBP|P53BP2|PPP1R13A	tumor protein p53 binding protein 2	protein-coding	10.099	7.357	9.405	10.795	6.487	3.627	7.650	5.056	0.615	4.775	1.967	6.276	15.582	4.399	0.178	11.073	9.256	14.337	21.402	15.570	nan	8.967	4.215	26.259	26.870	5.110	6.435	10.615	18.196	7.230	7.634	2.915	5.477	8.182	7.117	10.787	8.066	4.247	2.893	5.516	2.647	1.070	3.362	7.650	6.276	1.522	2.872	0.913	2.966
4927	chr20	32197208	32201783	+	0	NA	intron (NM_001039709, intron 3 of 10)	AluJr|SINE|Alu	49324	NM_005093	9139	Hs.153934	NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 translocation partner 2	protein-coding	1.244	1.696	1.511	0.466	1.148	0.645	0.376	0.338	0.071	0.275	0.129	0.287	0.614	0.118	0.134	2.991	1.935	1.779	0.648	0.614	nan	1.332	0.605	19.592	19.844	1.212	1.738	0.706	0.833	0.902	0.462	9.146	8.312	0.174	0.209	0.924	nan	0.538	0.326	0.084	0.196	0.021	0.160	0.376	0.287	0.022	0.044	4.233	0.489
7710	chr8	62456174	62476781	+	0	NA	intron (NM_004318, intron 19 of 24)	intron (NM_004318, intron 19 of 24)	135931	NM_001164752	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding	2.505	0.766	1.083	0.107	0.233	0.124	0.297	0.123	0.038	0.138	0.197	0.162	0.333	0.026	0.079	0.336	0.263	0.234	0.329	0.736	0.929	0.409	0.138	0.136	0.164	5.659	nan	0.267	0.298	nan	3.162	0.181	0.335	0.577	0.531	0.601	2.092	0.878	0.751	0.049	0.242	0.111	0.277	0.297	0.162	13.340	0.079	0.060	0.380
749	chr1	192506087	192514634	+	0	NA	Intergenic	Intergenic	-34497	NM_002922	5996	Hs.75256	NM_002922	ENSG00000090104	RGS1	1R20|BL34|HEL-S-87|IER1|IR20	regulator of G-protein signaling 1	protein-coding	0.825	nan	0.910	0.102	0.095	0.131	0.138	0.665	0.218	0.204	0.144	0.042	0.291	0.101	0.100	0.986	0.903	13.166	11.173	0.427	0.458	0.180	0.090	0.475	0.594	0.395	nan	0.282	0.301	0.324	0.177	0.101	0.293	0.063	0.059	0.349	0.667	0.349	0.481	0.026	0.156		0.027	0.138	0.042		0.059	0.036	0.073
4910	chr20	30537928	30565248	+	0	NA	Intergenic	L1MC4a|LINE|L1	-4217	NM_001011718	343702	Hs.666444	NM_001011718	ENSG00000260903	XKR7	C20orf159|dJ310O13.4	XK related 7	protein-coding	2.189	1.854	1.220	0.747	0.925	0.399	0.849	0.369	0.095	0.533	0.308	1.114	2.008	0.382	0.117	3.019	3.753	0.651	0.781	1.400	nan	4.084	1.456	0.758	0.749	1.229	1.799	1.342	1.708	7.950	6.840	1.377	2.160	2.326	2.234	1.420	nan	0.858	0.475	0.460	0.531	1.053	0.383	0.849	1.114	1.849	0.643	1.008	1.746
4408	chr2	75693384	75731973	+	0	NA	Intergenic	Intergenic	-38516	NR_110281	101927884	Hs.671110	NR_110281	ENSG00000231172	LOC101927884	-	uncharacterized LOC101927884	ncRNA	nan	nan	0.770	0.637	1.982	0.999	0.699	0.206	0.125	0.538	0.395	0.440	0.574	0.048	0.110	0.502	0.364	0.211	0.453	0.861	0.956	5.170	1.971	0.211	0.193	0.310	0.526	1.116	0.955	0.383	0.202	0.136	0.213	1.220	1.585	0.181	0.292	nan	1.442	0.023	0.129	0.393	0.174	0.699	0.440	0.025	0.542	0.036	0.080
4846	chr20	10408694	10418238	+	0	NA	promoter-TSS (NM_018848)	promoter-TSS (NM_018848)	-893	NM_018848	8195	Hs.472119	NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	McKusick-Kaufman syndrome	protein-coding	3.634	nan	2.411	3.851	2.262	1.310	1.738	2.895	0.522	1.773	0.887	2.585	6.983	1.904	0.102	8.282	6.556	2.936	4.485	5.616	4.284	8.738	3.744	7.671	7.512	4.562	5.309	6.441	9.577	6.265	6.853	2.080	3.959	4.073	4.847	4.840	4.788	2.279	1.567	1.649	3.234	0.648	1.103	1.738	2.585	1.373	3.091	1.887	1.257
6059	chr4	159724584	159749150	+	0	NA	intron (NM_001323916, intron 1 of 16)	intron (NM_001323916, intron 1 of 16)	9621	NM_001323916	57600	Hs.652441	NM_020840	ENSG00000052795	FNIP2	FNIPL|MAPO1	folliculin interacting protein 2	protein-coding	nan	1.608	0.995	0.633	0.313	0.156	0.141	1.750	0.151	0.128	0.102	0.190	0.645	0.711	0.119	0.263	0.243	0.993	5.199	0.239	0.273	0.623	0.232	0.320	0.327	0.817	1.143	0.714	0.758	1.134	0.806	0.223	0.289	0.617	1.309	0.604	1.277	0.421	0.413	0.020	0.080	0.109	0.254	0.141	0.190	0.158	0.029	0.086	0.347
5286	chr22	42931442	42937212	+	0	NA	Intergenic	AluJo|SINE|Alu	-15541	NR_104301	253190	Hs.728878	NM_014509	ENSG00000183569	SERHL2	dJ222E13.1	serine hydrolase-like 2	protein-coding	0.811	nan	0.830	1.624	0.468	0.225	0.136	0.050	0.143	0.753	0.171	0.554	0.504	0.094	0.169	0.428	0.488	0.327	0.567	0.297	0.338	4.902	1.305	0.175	0.201	0.280	nan	4.983	4.033	nan	0.196	0.307	0.354	1.345	1.276	0.196	0.642	1.033	0.774	0.263	0.760	0.129		0.136	0.554		9.020	0.069	0.108
7248	chr7	32978962	32983373	+	0	NA	intron (NR_003500, intron 1 of 5)	MER57A-int|LTR|ERV1	1615	NR_003500	441212	Hs.648086	NM_001039754	ENSG00000205763	RP9P	-	retinitis pigmentosa 9 pseudogene	pseudo	5.349	2.664	4.448	2.545	2.037	1.240	1.614	1.816	0.377	1.598	1.017	4.317	5.284	5.565	0.144	14.622	16.273	10.340	8.291	5.419	nan	6.275	2.229	17.912	18.283	3.411	nan	nan	nan	1.603	2.080	5.058	9.803	2.731	2.087	3.996	nan	1.888	1.218	2.098	0.678	0.649	2.533	1.614	4.317	0.638	4.478	3.022	0.542
253	chr1	41155844	41160158	+	0	NA	promoter-TSS (NR_024567)	promoter-TSS (NR_024567)	-68	NR_024567	100130557	Hs.233458	NR_024567		NFYC-AS1	0808y08y	NFYC antisense RNA 1	ncRNA	27.539	3.527	nan	3.499	4.758	2.417	4.158	2.540	0.333	2.531	1.416	7.409	10.069	4.285	0.245	5.834	5.292	6.923	10.031	9.270	9.306	4.703	3.236	11.652	12.781	6.190	nan	10.707	14.443	8.546	7.988	9.434	nan	3.758	3.876	7.135	6.616	3.300	1.413	4.005	3.368	0.728	3.695	4.158	7.409	1.354	1.883	3.834	2.235
6685	chr6	26700797	26710664	+	0	NA	Intergenic	Intergenic	-45750	NM_001242799	79692	Hs.126280	NM_024639	ENSG00000181315	ZNF322	HCG12|ZNF322A|ZNF388|ZNF489	zinc finger protein 322	protein-coding	1.408	1.360	nan	11.922	0.747	0.293	0.173	0.222	0.141	1.336	0.698	7.136	nan	0.078	0.252	0.717	0.281	0.282	nan	4.474	4.172	nan	0.912	0.484	0.444	0.322	0.509	15.910	13.031	0.441	0.200	0.249	0.415	0.378	0.285	0.259	0.788	3.417	1.894	0.033	1.744	0.106	0.008	0.173	7.136	0.041	4.714	0.100	0.114
7252	chr7	36428479	36434585	+	0	NA	intron (NM_001284302, intron 1 of 22)	intron (NM_001284302, intron 1 of 22)	-1798	NM_001100425	23366	Hs.6224	NM_015314	ENSG00000164542	KIAA0895	-	KIAA0895	protein-coding	5.533	2.855	3.874	2.294	3.374	1.394	2.081	2.484	0.475	1.774	0.935	5.517	8.028	4.784	0.219	5.322	6.762	8.458	9.982	6.172	nan	6.642	2.360	9.314	8.990	4.207	nan	nan	nan	3.710	4.023	4.742	7.841	5.548	6.670	3.797	nan	3.223	1.771	2.237	2.632	1.448	2.105	2.081	5.517	0.764	1.998	6.943	1.618
5928	chr4	70183166	70190266	+	0	NA	Intergenic	MER52A|LTR|ERV1	40499	NM_053039	54490	Hs.653154	NM_053039	ENSG00000135226	UGT2B28	-	UDP glucuronosyltransferase family 2 member B28	protein-coding	0.392	0.824	0.530	1.197	0.854	0.316	0.180	0.056	0.022	0.290	0.232	0.709	0.019	0.015	0.041	0.365	0.325	0.022	0.018	1.469	1.464	6.455	1.042	1.370	1.479	0.143	0.144	8.254	5.330	0.408	0.173	0.135	0.162	0.371	0.197	0.079	0.166	5.411	2.683	0.118	0.414		0.382	0.180	0.709		0.143	0.099	
3278	chr17	9951293	9979634	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	-25399	NM_201432	8522	Hs.462214	NM_003644	ENSG00000007237	GAS7	MLL/GAS7	growth arrest specific 7	protein-coding	0.665	0.751	0.561	0.065	0.155	0.034	0.063	0.061	0.080	0.062	0.032	0.038	0.175	0.045	0.101	1.193	1.995	2.026	4.192	0.160	0.215	0.098	0.049	0.074	0.090	0.084	0.192	0.147	0.178	0.472	0.287	0.404	0.634	0.021	0.050	0.252	0.403	0.074	0.107	0.106	0.050	0.010	0.022	0.063	0.038	0.017	0.039	0.283	0.201
2427	chr13	105993664	105999312	+	0	NA	Intergenic	Intergenic	-121728	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding	0.733	0.885	0.542	0.124	0.343	0.028	0.339	0.066	0.086	0.061	0.030	0.211	0.327	0.097	0.082	2.610	1.686	9.170	5.398	0.489	0.421	0.111	0.074	0.275	0.276	0.477	nan	0.516	0.430	0.414	0.451	0.210	0.141	0.051	0.070	0.265	nan	0.038	0.118	0.020	0.347	0.016	0.054	0.339	0.211		0.036	0.017	0.087
7223	chr7	27182054	27220711	+	0	NA	TTS (NM_152739)	TTS (NM_152739)	3767	NM_152739	3205	Hs.659350	NM_152739	ENSG00000078399	HOXA9	ABD-B|HOX1|HOX1.7|HOX1G	homeobox A9	protein-coding	6.991	2.937	1.686	0.847	2.332	1.164	0.939	0.381	0.070	1.852	1.000	4.195	1.543	2.014	0.136	4.314	5.966	6.913	nan	8.846	7.145	2.758	0.970	1.987	2.093	3.738	5.164	7.045	8.371	2.570	2.763	3.792	8.735	3.422	2.936	0.351	nan	2.265	1.199	2.564	3.098	1.135	0.663	0.939	4.195	0.707	0.202	3.405	0.185
63	chr1	8873587	8891075	+	0	NA	Intergenic	Intergenic	-4632	NM_001042681	473	Hs.463041	NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding	2.551	nan	3.279	7.838	1.935	1.121	1.662	1.422	0.304	1.118	0.666	1.336	4.033	1.436	0.131	1.841	2.562	1.346	2.225	6.598	7.071	3.564	0.989	3.329	3.415	2.309	nan	nan	11.305	nan	3.806	2.005	3.127	1.560	1.710	2.734	4.790	1.988	0.991	2.555	3.475	0.423	0.650	1.662	1.336	0.580	1.488	1.700	1.378
5009	chr20	53596286	53635028	+	0	NA	Intergenic	L1MC4|LINE|L1	-423924	NR_110629	102723578	Hs.446269	NR_110629	ENSG00000235166	LINC01440	-	long intergenic non-protein coding RNA 1440	ncRNA	0.626	1.041	0.469	0.091	0.195	0.111	0.049	0.090	0.098	0.266	0.264	0.049	0.236	0.036	0.105	0.674	nan	0.139	0.199	0.180	0.234	8.503	3.146	0.107	0.150	0.202	0.321	0.151	0.191	0.293	0.091	0.145	0.183	0.702	0.618	0.160	0.287	0.171	0.227	0.013	0.087	0.144	0.021	0.049	0.049	0.007	0.050	0.033	0.057
1637	chr11	111846211	111860131	+	0	NA	exon (NM_001037954, exon 8 of 21)	exon (NM_001037954, exon 8 of 21)	5138	NM_033425	85458	Hs.655626	NM_033425	ENSG00000150764	DIXDC1	CCD1	DIX domain containing 1	protein-coding	0.654	0.879	1.164	0.276	0.386	0.312	0.260	0.150	0.077	0.090	0.241	0.642	0.521	0.209	0.114	4.796	nan	4.848	6.644	1.099	1.368	0.812	0.248	2.351	2.527	0.941	nan	0.653	0.739	0.540	0.391	3.386	6.623	0.240	0.311	0.349	0.616	0.918	0.700	0.096	0.128	0.055	0.515	0.260	0.642	0.084	0.169	5.632	0.115
7919	chr8	126434304	126449696	+	0	NA	promoter-TSS (NM_025195)	promoter-TSS (NM_025195)	-563	NM_025195	10221	Hs.444947	NM_025195	ENSG00000173334	TRIB1	C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1	tribbles pseudokinase 1	protein-coding	nan	nan	nan	3.292	6.223	3.499	1.727	1.625	0.221	1.811	0.604	3.902	nan	1.383	0.114	3.520	5.192	3.168	4.669	4.683	3.601	5.987	2.362	nan	nan	1.814	2.315	3.548	5.315	3.451	5.196	4.028	8.497	2.918	2.619	3.572	3.898	1.010	0.769	2.918	2.391	0.564	2.522	1.727	3.902	1.222	3.029	5.863	1.721
6377	chr5	95027329	95074251	+	0	NA	Intergenic	AluSc|SINE|Alu	-16060	NM_014899	22836	Hs.445030	NM_014899	ENSG00000164292	RHOBTB3	-	Rho related BTB domain containing 3	protein-coding	nan	2.704	1.689	0.379	0.400	0.273	0.779	1.044	0.148	0.377	0.180	0.284	2.466	0.335	0.133	0.467	0.398	6.265	8.147	1.067	0.871	1.038	0.336	0.288	0.301	0.734	1.097	1.478	1.849	0.736	0.671	0.157	0.337	1.528	2.356	0.504	nan	1.191	0.688	1.591	0.609	0.400	0.151	0.779	0.284	0.053	0.431	0.065	0.206
1105	chr10	42377112	42378268	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	485803	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo	14.111	19.110	15.189	4.893	7.202	4.452	5.776	2.460	14.934	3.713	8.302	2.126	9.216	2.679	8.390	6.616	2.183	1.686	3.314	5.344	8.005	2.134	1.108	3.966	3.362	5.433	7.865	3.152	3.226	7.451	1.782	2.016	4.073	1.955	3.203	2.640	4.268	2.149	3.468	0.872	5.035	1.456	1.066	5.776	2.126	1.761	1.655	1.258	2.867
1334	chr11	19259776	19267219	+	0	NA	promoter-TSS (NM_024680)	promoter-TSS (NM_024680)	-295	NM_001256372	79733	Hs.523526	NM_024680	ENSG00000129173	E2F8	E2F-8	E2F transcription factor 8	protein-coding	1.494	nan	1.561	2.439	1.130	0.689	1.117	1.291	0.107	0.451	0.266	1.388	10.086	1.238	0.076	nan	2.858	2.839	4.070	1.488	1.412	2.153	1.308	5.305	5.091	1.145	nan	2.004	2.552	1.585	1.253	0.986	1.609	1.598	2.157	0.892	0.795	0.889	nan	0.853	1.272	0.396	0.927	1.117	1.388	0.145	0.574	0.319	0.166
2096	chr12	97981731	97994114	+	0	NA	Intergenic	Intergenic	30332	NR_029678	406926		NR_029678	ENSG00000207586	MIR135A2	MIRN135-2|MIRN135A2|mir-135a-2	microRNA 135a-2	ncRNA	0.744	0.763	0.668	0.199	1.587	0.759	0.762	0.156	0.208	2.337	1.791	0.599	nan	0.062	0.110	0.316	0.182	0.175	0.238	0.830	1.070	3.555	0.828	0.209	0.329	0.567	nan	0.676	nan	0.393	0.279	0.127	0.212	2.639	2.204	0.137	0.185	5.378	2.129	0.350	0.220	0.453	0.076	0.762	0.599	0.016	1.026	0.040	0.058
2805	chr14	106108170	106117985	+	0	NA	Intergenic	Intergenic	6572	NR_107059	102466889		NR_107059	ENSG00000277030	MIR8071-2	hsa-mir-8071-2	microRNA 8071-2	ncRNA	1.237	0.700	2.129	0.089	0.135	0.098	0.144	0.054	0.130	0.028	0.076	0.036	0.236	0.055	0.066	0.350	0.405	0.092	0.084	0.273	0.343	0.312	0.123	0.071	0.097	0.159	0.263	0.137	0.143	0.317	0.236	0.339	0.293	0.252	0.322	0.077	0.058	0.112	0.122	5.944	0.055	0.039	0.081	0.144	0.036	0.348		0.050	0.025
3776	chr18	43976988	43995552	+	0	NA	intron (NM_001256758, intron 1 of 5)	intron (NM_001256758, intron 1 of 5)	72083	NM_001256758	494470	Hs.501114	NM_152470	ENSG00000141622	RNF165	ARKL2|RNF111L2	ring finger protein 165	protein-coding	nan	1.356	1.255	0.815	0.520	0.260	1.309	0.340	0.104	0.161	0.137	0.452	2.690	0.053	0.079	0.485	0.766	0.253	0.418	1.333	1.287	1.725	0.572	0.169	0.169	0.406	0.727	1.048	0.951	0.713	0.735	0.315	0.626	0.330	0.510	0.354	nan	2.172	1.401	4.266	1.265	0.097	0.256	1.309	0.452	0.241	0.049	0.964	0.307
1784	chr12	5339065	5355067	+	0	NA	TTS (NR_120477)	TTS (NR_120477)	5251	NR_120476	101929584	Hs.436529	NR_120476	ENSG00000256115	LOC101929584	-	uncharacterized LOC101929584	ncRNA	0.814	nan	nan	1.283	0.345	0.170	0.315	0.057	0.084	0.576	0.304	0.813	1.034	0.081	0.134	0.201	0.168	0.203	0.559	nan	0.556	10.729	3.282	0.291	0.348	0.719	0.911	1.055	0.721	0.373	0.279	0.178	0.247	1.520	1.072	0.364	nan	0.683	0.436	0.055	0.300	0.452	0.490	0.315	0.813	0.031	0.038	0.062	0.217
938	chr1	235665524	235669831	+	0	NA	5' UTR (NM_152490, exon 1 of 12)	5' UTR (NM_152490, exon 1 of 12)	104	NM_001277155	148789	Hs.498143	NM_152490	ENSG00000162885	B3GALNT2	B3GalNAc-T2|MDDGA11	beta-1,3-N-acetylgalactosaminyltransferase 2	protein-coding	10.903	6.330	7.834	8.809	6.029	3.874	5.670	4.669	1.141	3.814	2.094	6.297	11.014	4.544	0.171	8.559	9.121	11.911	19.664	12.105	9.634	11.628	5.123	18.981	20.298	4.887	6.852	nan	12.642	8.253	9.912	2.694	4.835	4.570	5.999	11.331	10.806	4.406	2.556	3.633	2.744	0.777	3.337	5.670	6.297	1.359	3.068	1.100	2.477
2149	chr12	114290190	114342948	+	0	NA	intron (NM_001146699, intron 21 of 24)	intron (NM_001146699, intron 21 of 24)	87607	NM_001146698	9904	Hs.7482	NM_016196	ENSG00000122965	RBM19	-	RNA binding motif protein 19	protein-coding	nan	nan	0.651	0.920	1.947	1.007	1.540	0.114	0.092	0.351	0.249	1.494	0.847	0.108	0.113	0.329	0.403	0.209	0.308	nan	nan	nan	0.639	0.470	0.537	0.340	0.578	nan	nan	0.488	0.418	0.359	0.603	0.577	0.492	0.446	1.026	nan	1.286	0.411	2.943	0.090	0.104	1.540	1.494	0.357	0.884	0.439	0.231
1620	chr11	108090431	108096973	+	0	NA	promoter-TSS (NM_001321307)	promoter-TSS (NM_001321307)	143	NM_000051	472	Hs.367437	NM_000051	ENSG00000149311	ATM	AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1	ATM serine/threonine kinase	protein-coding	2.702	2.750	2.199	3.771	3.036	1.468	2.661	1.405	0.114	1.526	0.814	2.756	7.413	2.960	0.162	13.658	13.051	3.783	5.643	8.079	7.390	6.061	3.106	7.613	8.417	5.934	7.096	5.168	7.946	7.065	7.159	6.609	11.149	4.566	4.918	4.318	5.289	3.112	1.575	3.303	2.748	0.817	1.794	2.661	2.756	0.787	2.094	3.666	1.438
2241	chr13	25736285	25769270	+	0	NA	intron (NR_120428, intron 1 of 3)	intron (NR_120428, intron 1 of 3)	1362	NR_120428	101928922	Hs.585620	NR_120428	ENSG00000234056	LINC00463	AMER2-AS1	long intergenic non-protein coding RNA 463	ncRNA	1.506	1.377	1.384	0.294	0.191	0.102	0.272	0.116	0.064	0.209	0.258	1.136	0.950	0.030	0.083	1.087	0.902	0.319	nan	1.377	1.319	1.402	0.613	0.134	0.164	0.307	0.410	0.341	0.373	5.190	4.739	1.357	3.504	0.041	0.065	6.638	12.252	1.088	0.946	0.111	0.172	0.009	0.070	0.272	1.136	0.035	0.012	1.812	5.602
5914	chr4	56914168	56918000	+	0	NA	Intergenic	Intergenic	-47511	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA	nan	1.574	2.690	4.483	3.315	1.891	3.862	0.139	0.125	1.972	1.136	4.178	6.377	2.679	0.071	7.830	8.697	5.009	7.429	7.188	6.069	9.836	2.511	4.224	4.510	5.712	7.211	8.090	13.431	4.990	6.515	3.076	8.350	4.972	5.527	4.865	3.477	9.867	5.608	1.629	3.001	0.818	4.318	3.862	4.178	0.804	4.031	2.292	1.204
6466	chr5	138506339	138534077	+	0	NA	intron (NM_022464, intron 1 of 9)	AluJr|SINE|Alu	13857	NM_022464	64374	Hs.483521	NM_022464	ENSG00000120725	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding	1.177	1.685	nan	0.678	0.697	0.346	0.524	0.421	0.180	0.332	0.191	0.652	3.416	0.449	0.141	0.439	0.426	0.953	1.389	1.339	1.441	0.980	0.349	0.902	0.895	1.101	1.475	1.491	1.713	0.959	0.817	0.890	1.194	1.269	1.480	1.220	3.719	0.957	0.529	1.099	1.884	0.248	0.275	0.524	0.652	0.287	0.526	0.331	0.929
6589	chr6	3608939	3633865	+	0	NA	Intergenic	Intergenic	130844	NM_183373	221749	Hs.484500	NM_183373	ENSG00000168994	PXDC1	C6orf145	PX domain containing 1	protein-coding	1.031	1.756	1.068	1.153	0.615	0.252	1.322	0.301	0.148	0.327	0.177	1.234	0.572	0.048	0.111	2.967	3.941	4.520	3.940	1.310	0.990	4.100	1.471	0.488	0.491	0.302	0.588	0.739	1.032	0.518	0.296	0.626	0.760	0.818	1.019	0.528	1.316	2.049	1.153	0.094	0.657	0.103	0.137	1.322	1.234	0.280	0.086	0.187	0.266
7456	chr7	116706730	116714225	+	0	NA	intron (NM_018412, intron 1 of 14)	L1MB2|LINE|L1	20358	NR_109980	93654	Hs.628891	NR_002331	ENSG00000226367	ST7-AS2	ST7AS2|ST7OT2	ST7 antisense RNA 2	ncRNA	nan	1.076	3.199	0.526	2.233	1.009	1.363	0.317	0.086	1.172	0.942	0.660	4.221	0.173	0.164	0.475	0.572	0.342	0.365	1.994	1.332	5.887	1.143	0.233	0.320	2.528	2.993	2.725	3.007	1.220	1.105	0.349	0.388	2.910	4.585	0.123	0.294	6.255	3.083	6.659	4.827	0.763	0.052	1.363	0.660	0.596	1.675	0.105	0.032
6142	chr5	3487901	3493139	+	0	NA	intron (NR_033898, intron 2 of 4)	intron (NR_033898, intron 2 of 4)	13598	NR_104618	102467075	Hs.652949	NR_104618	ENSG00000250716	LINC01017	-	long intergenic non-protein coding RNA 1017	ncRNA	0.559	0.690	0.743	0.065	0.746	0.148	1.274	0.129	0.091	0.061	0.111	0.526	1.099	0.041	0.116	0.655	0.430	0.247	nan	8.690	7.414	0.142	0.055	0.054	0.021	0.255	0.260	nan	0.097	12.803	15.220	0.251	0.404	0.033	0.039	0.096	0.168	0.194	nan	0.027	0.239	0.017	0.726	1.274	0.526	2.572	0.037	0.112	0.024
929	chr1	234504021	234510466	+	0	NA	Intergenic	MER63B|DNA|hAT-Blackjack	1906	NR_125962	101927765	Hs.596703	NR_125961	ENSG00000231663	LOC101927765	-	uncharacterized LOC101927765	ncRNA	2.893	2.846	2.610	4.461	4.186	2.161	3.154	1.935	0.225	2.310	1.443	2.898	5.724	2.226	0.194	4.736	4.628	6.836	10.099	5.621	5.634	5.130	1.856	7.148	7.843	2.539	2.691	nan	6.817	4.312	4.003	1.987	2.989	3.820	8.745	4.652	5.236	nan	1.309	1.552	2.078	0.678	1.367	3.154	2.898	0.721	1.794	0.859	1.969
2370	chr13	91991774	92003504	+	0	NA	Intergenic	Intergenic	-2435	NR_027350	407975	Hs.24115	NR_027349	ENSG00000215417	MIR17HG	C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92	miR-17-92a-1 cluster host gene	ncRNA	3.041	2.465	2.973	1.891	1.865	1.078	5.815	0.676	0.109	1.047	0.466	3.500	3.913	1.416	0.108	6.262	6.016	3.354	4.004	5.086	4.387	5.277	2.590	4.210	3.928	0.702	0.954	4.483	7.007	5.522	7.531	3.059	6.415	8.504	8.155	7.636	5.006	0.672	0.437	2.357	2.831	1.855	2.892	5.815	3.500	0.390	1.827	1.470	1.757
7825	chr8	98875469	98883947	+	0	NA	Intergenic	Intergenic	-1541	NM_030583	4147	Hs.189445	NM_002380	ENSG00000132561	MATN2	-	matrilin 2	protein-coding	nan	1.254	3.965	4.136	1.227	0.511	0.375	0.394	0.152	0.334	0.172	1.443	4.390	0.543	0.083	0.300	0.247	0.679	nan	1.674	1.495	2.200	0.610	0.894	0.851	0.596	0.856	13.742	17.113	2.056	2.666	0.525	0.895	2.336	4.712	1.125	1.954	2.635	1.464	0.098	0.302	0.517	0.237	0.375	1.443	0.106	2.994	0.116	1.218
5199	chr22	23448047	23461911	+	0	NA	intron (NM_002073, intron 2 of 2)	intron (NM_002073, intron 2 of 2)	29262	NM_014433	27156	Hs.526920	NM_014433	ENSG00000100218	RSPH14	RTDR1	radial spoke head 14 homolog	protein-coding	1.369	nan	2.989	0.688	0.492	0.246	1.121	0.092	0.012	1.132	0.283	1.251	1.331	0.071	0.052	0.568	1.167	0.312	0.503	3.729	2.853	2.532	1.249	0.820	0.804	1.101	1.855	1.830	2.888	1.307	1.540	0.334	0.364	2.376	2.775	0.553	0.911	5.772	3.305	1.536	0.926	0.736	0.127	1.121	1.251	0.778	3.068	0.100	0.329
2554	chr14	36393987	36410951	+	0	NA	Intergenic	L2c|LINE|L2	106872	NM_032352	84312	Hs.525299	NM_032352	ENSG00000100916	BRMS1L	BRMS1	breast cancer metastasis-suppressor 1-like	protein-coding	1.146	0.826	1.307	0.242	0.468	0.190	0.142	0.139	0.143	0.102	0.169	0.119	0.632	0.070	0.130	0.162	0.130	0.185	0.245	0.655	0.794	1.359	0.330	0.255	0.225	0.424	0.617	0.560	0.580	0.646	0.345	0.188	0.168	3.758	3.289	0.188	0.573	1.019	0.576	0.217	0.505	0.990	0.097	0.142	0.119	0.017	0.101	0.029	0.059
1538	chr11	77849396	77862141	+	0	NA	intron (NR_102280, intron 2 of 3)	AluSq4|SINE|Alu	4929	NR_102280	100289388	Hs.628183	NM_203432	ENSG00000246174	KCTD21-AS1	-	KCTD21 antisense RNA 1	ncRNA	nan	1.606	1.120	1.108	1.230	0.617	1.042	0.532	0.126	0.672	0.480	2.633	2.850	1.368	0.136	1.701	1.569	1.335	2.003	3.491	4.217	6.040	1.771	4.436	4.669	2.051	2.638	2.412	2.911	1.414	1.097	0.853	1.320	1.751	1.872	0.948	1.269	1.872	1.069	0.968	1.467	0.285	1.072	1.042	2.633	0.372	0.709	0.248	0.363
1583	chr11	94463358	94492563	+	0	NA	Intergenic	Intergenic	-4439	NR_135096	105369438	Hs.568921	NR_135093	ENSG00000255929	LOC105369438	-	uncharacterized LOC105369438	ncRNA	0.996	nan	0.888	0.413	0.951	0.502	0.989	0.268	0.077	0.477	0.256	0.302	2.375	0.085	0.111	0.895	0.780	0.689	nan	1.349	1.318	3.860	1.241	0.689	0.846	1.384	2.132	0.584	0.623	0.762	0.644	0.410	0.685	3.702	4.532	0.663	nan	1.280	0.931	0.842	0.213	0.847	0.630	0.989	0.302	0.324	0.066	0.092	0.446
8351	chr9_gl000201_random	28329	35740	+	0	NA	NA	L2c|LINE|L2	NA	NA									0.452	0.511	1.347	3.302	2.659	1.310	2.272	0.019		1.588	0.860	7.728	2.284	0.043	0.017	0.373	0.695	0.094	0.112	9.035	9.574	nan	0.484	0.049	0.045	0.061	0.077	4.279	3.766	0.651	0.483	0.428	0.614	1.532	1.261	0.267	0.373	0.972	0.589	4.810	1.787	0.760	0.203	2.272	7.728	0.287	3.012	0.613	0.016
5740	chr3	183043367	183069350	+	0	NA	intron (NM_015078, intron 5 of 29)	intron (NM_015078, intron 5 of 29)	85326	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0.882	1.071	0.678	2.251	3.219	1.634	0.127	0.188	0.107	0.656	0.336	2.284	1.349	0.041	0.109	1.370	1.194	0.254	0.305	0.659	0.782	2.281	0.664	0.250	0.242	0.234	0.456	1.782	1.773	0.627	0.330	0.203	0.365	0.156	0.209	0.225	0.357	1.500	0.928	0.126	0.292	0.029	0.107	0.127	2.284	0.027	0.043	0.027	0.116
7289	chr7	55494814	55509411	+	0	NA	TTS (NM_018697)	TTS (NM_018697)	68971	NM_018697	55915	Hs.595384	NM_018697	ENSG00000132434	LANCL2	GPR69B|TASP	LanC like 2	protein-coding	nan	1.882	1.412	0.820	0.467	0.320	0.313	0.165	0.121	0.973	0.386	1.780	1.794	0.129	0.131	0.574	0.680	0.344	0.404	4.300	3.537	2.100	0.570	0.146	0.232	0.383	0.627	3.648	5.076	0.445	0.252	0.273	0.344	0.160	0.139	0.402	0.736	3.540	1.848	1.221	0.309	0.033	0.130	0.313	1.780	0.061	2.162	0.048	0.175
5158	chr21	45335919	45366614	+	0	NA	intron (NM_001037553, intron 1 of 8)	intron (NM_001037553, intron 1 of 8)	5987	NM_001037553	56894	Hs.248785	NM_020132	ENSG00000160216	AGPAT3	LPAAT-GAMMA1|LPAAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	nan	0.719	3.929	0.206	0.326	0.152	0.955	0.133	0.089	0.219	0.144	0.994	0.530	0.139	0.066	0.750	0.955	0.718	0.807	1.910	1.592	nan	0.329	0.283	0.341	0.445	nan	0.496	0.832	0.632	0.485	0.483	0.588	3.098	3.293	0.509	1.187	1.116	0.662	0.106	0.229	0.689	0.535	0.955	0.994	0.642	0.245	0.092	0.290
5723	chr3	181522458	181527683	+	0	NA	Intergenic	L1MB8|LINE|L1	95358	NM_003106	6657	Hs.518438	NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY-box 2	protein-coding	0.815	0.984	0.593	0.273	0.489	0.222	0.245	0.058	0.280	0.240	0.243	0.160	0.418	0.315	0.104	0.250	0.267	0.203	0.248	0.451	0.493	12.726	3.356	0.134	0.105	0.534	0.775	0.719	0.806	0.667	0.259	0.184	0.297	0.174	0.219	0.109	0.259	0.458	0.584	0.021	0.153	0.037	0.091	0.245	0.160	0.037		0.039	0.117
6272	chr5	56746262	56755503	+	0	NA	Intergenic	Intergenic	27754	NM_001017992	345651	Hs.482167	NM_001017992	ENSG00000169067	ACTBL2	ACT	actin, beta like 2	protein-coding	nan	nan	0.753	0.044	2.203	1.185	0.207	1.596	0.070	0.035	0.097	0.013	1.294	0.092	0.103	0.121	0.076	3.024	10.622	0.152	0.174	nan	0.076	0.129	0.177	1.217	1.496	0.129	0.149	nan	0.301	0.043	0.104	0.450	1.040	0.194	0.563	0.608	0.615	0.137	0.097	0.144	0.095	0.207	0.013	0.062		0.011	0.146
7399	chr7	96624130	96662929	+	0	NA	promoter-TSS (NR_015448)	promoter-TSS (NR_015448)	-152	NR_015448	285987	Hs.34969	NR_015448		DLX6-AS1	DLX6-AS|DLX6AS|Evf-2|NCRNA00212	DLX6 antisense RNA 1	ncRNA	nan	2.602	nan	0.835	10.472	5.384	2.098	0.104	0.093	5.544	2.961	1.891	3.047	0.647	0.129	0.377	0.237	7.638	9.533	1.861	1.798	10.887	4.277	0.298	0.354	1.092	1.532	0.988	1.239	0.547	0.510	0.343	0.709	12.821	9.898	0.679	nan	5.932	3.462	0.918	0.703	3.639	2.582	2.098	1.891	0.168	0.543	0.161	0.385
1055	chr10	17427401	17433235	+	0	NA	intron (NR_034129, intron 1 of 2)	LTR80A|LTR|ERVL	1383	NR_034129	100128098	Hs.530588	NR_034129	ENSG00000204832	ST8SIA6-AS1	-	ST8SIA6 antisense RNA 1	ncRNA	nan	2.643	3.356	8.695	2.540	1.240	0.702	0.203	0.055	0.532	0.183	7.157	5.948	0.018	0.109	0.442	0.328	1.726	3.006	1.574	1.242	18.312	8.403	0.268	0.250	1.347	1.887	8.741	13.419	0.217	0.034	3.966	4.455	0.244	0.142	0.212	0.287	2.298	1.211	0.029	0.152	0.032	0.055	0.702	7.157		1.772	2.968	
3610	chr17	79065226	79072425	+	0	NA	intron (NM_017451, intron 6 of 14)	intron (NM_017451, intron 6 of 14)	30348	NR_030394	724027		NR_030394	ENSG00000207736	MIR657	MIRN657|hsa-mir-657	microRNA 657	ncRNA	1.658	2.228	1.537	0.622	1.775	0.445	9.823	0.279	0.199	0.412	0.116	0.998	2.839	0.378	0.092	1.784	2.589	0.709	2.244	1.851	1.450	2.528	1.085	0.366	0.351	nan	0.756	0.860	2.761	1.836	2.221	0.614	0.841	1.232	1.454	2.305	3.047	nan	0.978	0.745	1.532	0.225	0.459	9.823	0.998	0.378	0.458	0.165	0.488
4050	chr19	39171602	39187654	+	0	NA	intron (NM_001322033, intron 1 of 20)	AluSx3|SINE|Alu	41372	NM_004924	81	Hs.270291	NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding	1.831	1.744	1.411	1.112	1.020	0.466	0.772	1.842	0.500	0.565	0.147	0.365	3.518	0.210	0.114	0.473	0.816	2.115	7.059	0.685	0.986	2.493	0.611	1.766	1.894	0.945	1.520	1.223	1.654	nan	0.591	0.656	1.030	2.237	3.743	1.054	2.230	1.168	0.784	0.207	0.227	0.594	0.128	0.772	0.365	0.545	2.344	0.402	0.973
6695	chr6	30522694	30526135	+	0	NA	promoter-TSS (NM_001077497)	promoter-TSS (NM_001077497)	-72	NM_001077497	80742	Hs.118354	NM_025263	ENSG00000204576	PRR3	CAT56	proline rich 3	protein-coding	nan	6.339	nan	9.626	7.830	4.368	9.025	4.478	0.700	3.363	1.402	8.898	21.756	7.696	0.232	9.666	10.165	8.786	13.328	nan	8.737	13.191	8.913	16.671	17.689	8.941	9.517	12.994	17.602	8.142	9.122	3.621	6.334	11.850	9.776	5.762	8.667	6.135	3.719	6.030	6.494	2.219	4.805	9.025	8.898	2.588	5.606	2.892	2.585
2447	chr13	111350506	111370724	+	0	NA	Intergenic	Intergenic	-2088	NM_024537	79587	Hs.508725	NM_024537	ENSG00000134905	CARS2	COXPD27|cysRS	cysteinyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	3.646	nan	3.042	6.291	3.821	2.085	3.902	1.219	0.265	1.110	0.629	3.918	7.526	2.228	0.108	6.561	6.928	3.454	5.096	6.338	5.441	7.100	3.537	3.676	3.614	0.739	1.036	5.121	7.052	3.686	4.238	2.555	4.604	6.019	5.839	4.204	3.964	0.972	0.521	5.496	5.308	1.593	3.986	3.902	3.918	0.601	2.206	1.696	1.010
3140	chr16	51456004	51500636	+	0	NA	Intergenic	Intergenic	-293137	NM_002968	6299	Hs.135787	NM_002968	ENSG00000103449	SALL1	HEL-S-89|HSAL1|Sal-1|TBS|ZNF794	spalt like transcription factor 1	protein-coding	nan	nan	nan	0.190	0.262	0.144	0.656	0.065	0.065	0.098	0.095	0.123	0.251	0.029	0.076	0.336	0.223	0.166	0.238	0.255	0.289	0.080	0.049	0.342	0.377	0.103	nan	nan	nan	nan	0.150	0.135	0.169	0.038	0.059	1.089	nan	nan	0.544	0.026	0.056	0.013	0.211	0.656	0.123	0.024	0.043	0.073	0.816
6164	chr5	8836048	8850171	+	0	NA	intron (NR_109932, intron 1 of 2)	intron (NR_109932, intron 1 of 2)	3265	NR_109932	101929284	Hs.403715	NR_109932		LOC101929284	-	uncharacterized LOC101929284	ncRNA	0.570	0.904	1.420	0.587	0.205	0.068	0.218	0.122	0.217	3.409	0.704	0.071	1.093	0.031	0.108	1.099	1.129	0.400	nan	0.612	0.696	0.117	0.091	0.095	0.063	0.237	0.407	nan	3.144	nan	0.295	0.315	0.514	1.826	3.155	0.188	0.265	1.768	nan	1.091	0.802	0.250	0.056	0.218	0.071	0.041	1.906	0.099	0.026
4939	chr20	35482315	35494704	+	0	NA	promoter-TSS (NM_199181)	promoter-TSS (NM_199181)	-233	NM_199181	140710	Hs.460807	NM_080627	ENSG00000149639	SOGA1	C20orf117|KIAA0889|SOGA	suppressor of glucose, autophagy associated 1	protein-coding	3.383	3.241	3.438	1.338	1.166	0.753	1.932	1.460	0.274	0.925	0.313	1.730	4.990	1.255	0.124	2.659	3.589	1.389	2.078	2.162	nan	5.875	1.471	2.509	2.162	2.501	3.713	2.065	4.125	2.627	2.724	1.184	2.544	1.747	1.713	1.924	nan	0.890	0.503	1.397	2.007	0.543	0.462	1.932	1.730	0.597	1.266	0.499	0.439
8182	chr9	86736181	86782219	+	0	NA	Intergenic	AluJo|SINE|Alu	80842	NR_110995	101927575	Hs.459826	NR_110995	ENSG00000227463	LOC101927575	-	uncharacterized LOC101927575	ncRNA	1.002	1.119	1.134	0.789	6.755	3.634	0.468	0.255	0.082	0.738	0.362	3.787	0.915	0.031	0.086	0.267	0.173	0.278	0.466	1.551	1.860	1.063	0.478	0.198	0.200	0.125	0.186	2.809	4.001	0.265	0.126	0.136	0.214	0.695	0.898	0.279	0.555	2.123	1.128	0.024	0.246	0.114	0.125	0.468	3.787	0.055	0.136	0.052	0.191
4520	chr2	140644902	140656277	+	0	NA	Intergenic	Intergenic	693665	NR_106979	102465692		NR_106979	ENSG00000283506	MIR7157	hsa-mir-7157	microRNA 7157	ncRNA	0.991	nan	1.435	0.100	0.236	0.154	0.123	0.079	0.084	0.027	0.066	0.094	0.285	0.028	0.060	0.264	0.121	0.206	0.178	0.263	0.340	0.400	0.220	0.114	0.106	2.443	2.570	0.265	0.278	0.400	0.250	0.088	0.179	42.383	49.001	0.349	0.680	0.236	0.199	0.029	0.039	11.372	0.098	0.123	0.094	0.044	0.018	0.035	0.076
1917	chr12	33135744	33151368	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	-93776	NM_001005242	5318	Hs.164384	NM_004572	ENSG00000057294	PKP2	ARVD9	plakophilin 2	protein-coding	0.582	nan	0.509	1.117	7.354	3.736	0.260	0.052	0.030	0.413	0.178	3.198	0.541	0.070	0.117	0.402	0.216	0.292	0.477	2.399	2.372	0.509	0.175	0.350	0.281	0.139	0.319	0.109	0.172	0.419	0.164	0.106	0.159	0.008	0.048	0.151	0.304	2.249	1.302	0.039	0.075		0.369	0.260	3.198	0.031	0.052	0.028	0.079
2993	chr15	92452089	92474256	+	0	NA	intron (NM_013272, intron 2 of 9)	intron (NM_013272, intron 2 of 9)	65642	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding	nan	nan	nan	2.448	2.129	1.173	0.306	0.221	0.094	2.098	1.186	3.879	4.639	0.020	0.075	0.649	0.998	0.294	0.559	1.390	1.389	nan	1.534	0.601	0.587	0.929	1.853	3.112	4.533	nan	1.061	0.983	1.985	2.409	3.047	0.062	nan	1.619	1.000	0.522	2.613	0.945	0.082	0.306	3.879	0.123	0.978	1.298	0.023
8282	chr9	130284050	130348926	+	0	NA	intron (NM_001035534, intron 1 of 13)	intron (NM_001035534, intron 1 of 13)	14908	NM_022833	64855	Hs.522401	NM_022833	ENSG00000136830	FAM129B	C9orf88|MEG-3|MINERVA|OC58|bA356B19.6	family with sequence similarity 129 member B	protein-coding	nan	1.922	3.445	2.983	1.931	0.877	0.609	0.719	0.204	0.849	0.405	2.846	3.759	0.254	0.074	0.479	0.619	0.638	1.320	4.263	4.698	nan	0.389	1.238	1.365	0.636	0.970	4.262	5.096	1.684	1.586	0.276	0.377	1.725	1.679	0.416	0.533	1.342	0.715	0.962	0.490	0.721	0.267	0.609	2.846	0.912	0.510	0.108	0.160
1713	chr11	123430101	123453653	+	0	NA	intron (NM_001286564, intron 1 of 19)	intron (NM_001286564, intron 1 of 19)	10907	NM_001286564	57476	Hs.144725	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding	0.872	0.798	4.230	0.190	0.557	0.225	0.300	0.038	0.096	0.628	0.455	0.684	1.002	0.051	0.103	4.127	5.075	0.607	0.352	0.975	0.835	0.204	0.083	3.985	4.269	1.232	1.827	0.142	0.152	0.978	1.034	2.112	3.080	0.891	0.774	0.479	nan	1.702	1.226	0.676	0.265	0.162	0.098	0.300	0.684	0.206	0.761	0.959	0.236
2420	chr13	104167404	104180974	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	96639	NR_126374	104326190	Hs.334381	NR_126374	ENSG00000234551	LINC01309	TCONS_l2_00007459	long intergenic non-protein coding RNA 1309	ncRNA	0.720	0.740	0.730	0.260	0.637	0.295	0.482	0.093	0.083	0.637	0.321	1.180	0.721	0.071	0.064	0.839	0.472	0.167	0.197	0.993	1.597	7.276	2.844	0.217	0.231	0.087	nan	1.346	0.994	0.420	0.188	0.257	0.337	0.881	0.602	0.533	nan	0.866	0.420	0.258	0.370	0.078	0.083	0.482	1.180	0.065	0.501	0.051	0.064
3722	chr18	31493879	31508249	+	0	NA	intron (NM_001198548, intron 7 of 8)	MLT1C-int|LTR|ERVL-MaLR	127512	NM_001198549	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding	nan	1.066	0.832	1.546	3.154	1.598	0.950	0.055	0.001	0.922	0.627	2.081	0.594	0.023	0.070	0.397	0.291	0.241	0.295	1.222	1.769	6.338	2.834	0.201	0.145	0.380	0.588	nan	5.555	0.384	0.166	0.132	0.246	4.199	5.227	0.199	0.595	2.045	1.438	0.080	0.092	1.399	0.122	0.950	2.081	0.040	0.368	0.027	0.165
6364	chr5	91967808	91980932	+	0	NA	Intergenic	Intergenic	932679	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA	nan	2.074	1.031	0.428	0.744	0.341	2.923	0.313	0.097	0.785	0.481	0.006	1.317	0.091	0.135	0.216	0.154	0.292	0.450	0.602	0.655	6.414	1.990	0.166	0.131	0.581	0.791	0.541	0.679	0.443	0.224	0.097	0.169	5.344	6.153	0.315	nan	1.459	0.639	0.081	0.343	1.509	0.183	2.923	0.006		1.959	0.038	0.009
7066	chr6	157094432	157113285	+	0	NA	intron (NM_020732, intron 1 of 19)	intron (NM_020732, intron 1 of 19)	-2993	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA	nan	1.667	3.201	4.218	3.011	1.539	3.157	1.465	0.111	1.490	0.684	3.955	5.657	2.732	0.130	3.624	5.477	6.879	6.525	7.613	nan	6.228	2.558	6.519	6.384	1.659	2.167	3.383	5.175	7.876	9.234	1.539	3.744	4.315	4.127	5.082	nan	1.160	0.653	4.411	3.638	1.211	2.457	3.157	3.955	0.874	1.918	1.080	1.497
4450	chr2	100935686	100940633	+	0	NA	exon (NM_198461, exon 1 of 12)	exon (NM_198461, exon 1 of 12)	1036	NM_198461	164832	Hs.21380	NM_198461	ENSG00000170500	LONRF2	RNF192	LON peptidase N-terminal domain and ring finger 2	protein-coding	1.177	nan	4.894	1.333	2.127	0.985	3.271	0.104	0.064	2.494	1.259	7.935	12.988	0.461	0.105	1.501	2.204	0.818	1.113	16.793	15.356	7.998	3.390	5.744	5.930	0.113	0.249	4.008	5.793	1.767	2.716	1.534	3.142	1.221	0.458	0.114	0.101	2.215	1.545	2.012	2.507	0.038	2.749	3.271	7.935	0.316	0.541	0.663	0.050
900	chr1	226837602	226928024	+	0	NA	intron (NM_002221, intron 2 of 7)	AluSx|SINE|Alu	-20044	NR_103784	100506443	Hs.664293	NR_103784		ITPKB-IT1	-	ITPKB intronic transcript 1	ncRNA	1.679	nan	3.652	0.822	1.410	0.713	1.959	0.442	0.126	1.180	0.605	2.408	1.429	0.235	0.123	1.035	1.523	1.135	2.064	2.826	nan	1.753	0.522	1.051	1.144	2.999	3.716	2.274	1.907	1.606	1.412	0.283	0.383	2.249	2.291	0.875	1.716	1.182	0.827	2.523	0.670	0.757	0.546	1.959	2.408	0.581	0.693	0.093	0.372
318	chr1	55514773	55534285	+	0	NA	intron (NR_110451, intron 7 of 9)	intron (NR_110451, intron 7 of 9)	18634	NR_110451	255738	Hs.18844	NM_174936	ENSG00000169174	PCSK9	FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding	1.602	1.930	4.229	0.138	0.282	0.123	0.249	0.160	0.082	0.153	0.159	0.092	5.894	0.096	0.101	0.311	0.331	0.245	0.469	0.689	0.791	0.542	0.158	0.445	0.450	0.442	1.018	0.442	0.804	1.270	1.526	0.265	0.277	0.348	0.324	0.408	nan	1.013	0.690	1.040	0.173	0.103	0.106	0.249	0.092	0.339	0.241	0.055	0.267
473	chr1	117900773	117912578	+	0	NA	Intergenic	Intergenic	-3410	NM_006699	10905	Hs.435938	NM_006699	ENSG00000198162	MAN1A2	MAN1B	mannosidase alpha class 1A member 2	protein-coding	nan	2.075	2.913	2.234	1.677	0.853	1.786	1.486	0.191	0.691	0.379	2.991	4.113	1.967	0.100	2.042	2.498	2.193	3.951	3.557	nan	4.060	1.775	0.063	0.031	2.314	2.873	3.366	5.039	2.432	2.600	2.865	5.076	2.076	2.414	3.375	3.352	1.916	1.098	0.846	4.314	0.500	1.123	1.786	2.991	0.556	1.196	1.580	1.322
7562	chr7	157800312	157825042	+	0	NA	intron (NM_130843, intron 10 of 21)	intron (NM_130843, intron 10 of 21)	165400	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	ncRNA	1.055	0.660	nan	0.837	0.743	0.366	1.588	0.097	0.118	0.384	0.368	1.019	0.721	0.053	0.142	0.618	0.977	0.108	0.131	0.765	0.883	3.630	1.594	0.059	0.049	0.192	0.331	1.234	2.331	0.820	0.560	0.662	0.916	2.452	2.915	0.104	0.119	2.227	1.595	1.104	1.064	0.643	0.184	1.588	1.019	0.320	1.118	0.718	0.010
2572	chr14	45043479	45059302	+	0	NA	Intergenic	L1PA7|LINE|L1	74778	NR_135257	105370473	Hs.180134	NR_135257	ENSG00000258747	LOC105370473	-	uncharacterized LOC105370473	ncRNA	nan	1.104	nan	4.378	1.501	0.848	0.162	0.086	0.148	1.021	0.497	1.300	1.813	0.021	0.155	0.303	0.133	0.264	0.275	0.449	0.644	4.179	3.099	0.278	0.219	0.231	0.494	2.637	2.644	0.482	0.193	0.056	0.134	1.627	1.497	0.153	0.250	2.508	1.127	1.865	0.153	0.428	0.076	0.162	1.300		0.051	0.025	0.024
1774	chr12	3641720	3650854	+	0	NA	intron (NM_019854, intron 1 of 9)	L1ME4a|LINE|L1	-44302	NR_126055	100129223	Hs.586788	NR_126055		THCAT155	-	thyroid cancer-associated transcript 155	ncRNA	1.017	nan	nan	1.683	0.493	0.187	0.407	0.125	0.053	0.376	0.277	1.727	11.540	0.095	0.105	0.253	0.236	0.089	0.116	nan	2.197	1.983	0.711	0.308	0.352	0.503	0.922	6.015	7.046	0.588	0.500	0.729	1.332	1.452	1.986	0.489	nan	2.331	1.429	5.898	4.274	0.315	0.161	0.407	1.727	0.233	0.768	0.575	0.232
3888	chr18	68573231	68579011	+	0	NA	Intergenic	Intergenic	-258028	NM_001278515	220158	Hs.448217	NM_178506		GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1 (non-protein coding)	protein-coding	0.680	0.867	0.665	0.830	0.850	0.304	1.708	0.077	0.193	0.951	0.771	2.701	2.930		0.102	0.503	0.316	0.526	0.921	2.363	2.925	10.090	2.766	2.615	nan	0.166	nan	3.064	2.349	0.781	0.433	0.082	0.161	3.255	6.196	0.160	0.337	6.245	3.072	1.023	0.437	0.164	0.014	1.708	2.701	0.153	2.500	0.052	0.042
6469	chr5	139013256	139091760	+	0	NA	intron (NM_001317203, intron 2 of 3)	intron (NM_001317203, intron 2 of 3)	-2517	NM_001317211	51523	Hs.189119	NM_016463	ENSG00000171604	CXXC5	CF5|HSPC195|RINF|WID	CXXC finger protein 5	protein-coding	2.112	1.041	nan	0.520	0.685	0.339	1.008	0.864	0.195	0.283	0.152	0.846	1.667	0.593	0.101	2.333	3.417	2.158	2.131	1.045	0.916	0.915	0.308	5.147	5.223	1.333	1.954	1.933	2.201	1.796	1.849	1.971	3.386	0.760	0.754	0.853	1.596	0.577	0.442	0.871	1.017	0.161	0.214	1.008	0.846	0.764	1.451	2.548	0.274
4782	chr2	239142788	239168676	+	0	NA	intron (NM_022817, intron 22 of 22)	intron (NM_022817, intron 22 of 22)	-6967	NM_001282434	55502	Hs.42949	NM_018645	ENSG00000144485	HES6	C-HAIRY1|HES-6|bHLHb41|bHLHc23	hes family bHLH transcription factor 6	protein-coding	2.381	nan	11.859	2.792	3.255	1.640	1.148	0.142	0.049	1.279	0.726	4.199	3.202	0.222	0.127	3.023	2.625	0.648	0.924	6.523	5.879	3.562	1.403	2.284	2.341	1.047	1.755	3.683	nan	4.080	5.122	2.250	3.204	1.616	1.406	2.495	5.272	1.128	0.629	2.530	1.830	0.562	1.885	1.148	4.199	0.375	1.280	1.442	1.525
6428	chr5	123208952	123212847	+	0	NA	Intergenic	Intergenic	329788	NM_004384	1456	Hs.129206	NM_004384	ENSG00000151292	CSNK1G3	CKI-gamma 3|CSNK1G3L	casein kinase 1 gamma 3	protein-coding	nan	2.039	0.894	0.359	4.758	2.808	0.276	0.444	0.041	0.262	0.104	1.614	2.445	0.520	0.147	3.449	2.762	12.421	12.051	1.771	1.425	4.099	2.562	6.551	6.856	1.007	1.512	1.106	1.211	0.478	0.240	1.426	1.743	0.736	0.744	0.677	2.243	0.827	0.420	0.330	0.138	0.220	0.712	0.276	1.614	0.024	0.809	0.332	0.785
2063	chr12	85942288	85971454	+	0	NA	Intergenic	Intergenic	273447	NM_005447	9182	Hs.527881	NM_005447	ENSG00000198774	RASSF9	P-CIP1|PAMCI|PCIP1	Ras association domain family member 9	protein-coding	0.806	0.809	0.864	0.143	0.344	0.154	0.039	0.480	0.155	0.150	0.186	0.132	0.333	0.034	0.115	0.475	0.671	0.728	0.969	0.337	0.374	3.912	1.122	0.529	0.477	1.645	1.781	0.344	0.375	0.361	0.180	0.248	0.480	1.899	1.961	0.372	0.530	0.692	0.706	0.010	0.058	0.320	0.044	0.039	0.132	0.020	0.077	0.115	0.123
6922	chr6	118969722	118986473	+	0	NA	intron (NM_001178035, intron 1 of 13)	ERV3-16A3_LTR|LTR|ERVL	-5077	NM_206921	387119	Hs.656959	NM_206921	ENSG00000111860	CEP85L	C6orf204|NY-BR-15|bA57K17.2	centrosomal protein 85 like	protein-coding	nan	1.340	nan	1.066	1.090	0.527	1.118	0.578	0.070	0.328	0.182	0.522	9.451	0.446	0.102	1.243	1.249	0.756	1.090	2.693	nan	nan	0.597	1.499	1.542	1.159	nan	1.907	2.243	1.605	1.879	0.329	0.550	1.331	1.317	1.903	nan	1.039	0.641	2.963	4.611	0.294	0.610	1.118	0.522	0.334	1.015	0.148	0.546
3723	chr18	31695248	31712806	+	0	NA	intron (NM_001198546, intron 2 of 9)	L4|LINE|RTE	-75451	NM_001198549	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding	nan	0.975	0.894	1.027	0.410	0.182	0.240	0.203	0.046	0.635	0.466	1.446	0.483	0.117	0.096	0.576	0.455	1.218	1.700	1.157	1.759	1.212	0.492	0.203	0.170	0.785	0.935	nan	2.561	0.684	0.363	0.266	0.400	2.329	4.044	0.628	2.016	1.304	0.692	0.079	0.111	0.912	0.224	0.240	1.446	0.094	0.116	0.159	0.254
8040	chr9	8844799	8871731	+	0	NA	non-coding (NR_121599, exon 1 of 3)	non-coding (NR_121599, exon 1 of 3)	247	NR_121599	101929407	Hs.649971	NR_121599		PTPRD-AS1	-	PTPRD antisense RNA 1	ncRNA	0.687	1.937	0.958	0.182	0.517	0.303	0.736	0.105	0.073	0.555	0.303	0.535	0.881	0.065	0.091	0.199	0.102	0.253	0.360	1.065	1.136	1.717	0.524	0.329	0.349	1.279	2.012	0.549	0.641	1.420	1.123	0.150	0.345	2.626	2.609	0.602	nan	1.224	1.002	0.865	0.237	0.743	0.307	0.736	0.535	0.072	0.566	0.070	0.114
1049	chr10	16559346	16565336	+	0	NA	intron (NM_001010908, intron 1 of 1)	CpG	1663	NM_001010908	389941	Hs.676792	NM_001010908	ENSG00000165985	C1QL3	C1QTNF13|C1ql|CTRP13|K100	complement C1q like 3	protein-coding	nan	1.026	0.677	5.991	3.251	1.736	0.128	0.145	0.035	0.701	0.608	5.174	2.078	0.192	0.055	0.305	0.342	0.259	0.279	3.624	3.039	12.075	5.004	0.231	0.174	0.217	0.382	0.472	0.976	0.401	0.553	0.368	0.462	4.375	3.725	2.792	4.259	1.659	0.840	0.028	0.445	1.970	0.831	0.128	5.174			0.115	0.141
4544	chr2	150965246	151026393	+	0	NA	Intergenic	Intergenic	348390	NM_005168	390	Hs.6838	NM_005168	ENSG00000115963	RND3	ARHE|Rho8|RhoE|memB	Rho family GTPase 3	protein-coding	nan	0.649	nan	0.155	0.675	0.398	0.457	0.527	0.153	0.115	0.135	0.165	0.493	2.273	0.095	0.294	0.253	0.509	1.011	0.311	0.342	0.581	0.179	0.308	0.309	0.441	0.631	0.350	0.285	0.362	0.174	0.202	0.238	0.125	0.229	0.263	0.528	0.352	0.339	0.160	0.086	0.026	0.150	0.457	0.165	0.141	0.120	0.060	0.077
1488	chr11	67976079	67984324	+	0	NA	intron (NM_001300909, intron 1 of 8)	CpG	583	NM_016028	51111	Hs.632120	NM_016028	ENSG00000110066	KMT5B	CGI-85|CGI85|SUV420H1	lysine methyltransferase 5B	protein-coding	nan	2.117	2.666	2.824	2.622	1.744	2.684	1.035	0.118	1.252	0.620	4.351	6.138	2.750	0.109	4.990	5.745	3.126	3.726	5.230	5.219	3.961	2.423	9.245	8.826	1.871	2.627	6.410	10.030	3.742	3.478	4.472	7.551	2.910	2.489	2.793	2.196	1.410	0.973	2.429	2.625	0.787	2.085	2.684	4.351	0.600	3.828	1.751	0.748
2725	chr14	89421088	89427232	+	0	NA	Intergenic	Intergenic	133663	NM_001288782	123016	Hs.303055	NM_144596	ENSG00000165533	TTC8	BBS8|RP51	tetratricopeptide repeat domain 8	protein-coding	1.439	0.735	nan	0.157	0.295	0.079	0.291	0.221	0.101	0.203	0.223	0.039	0.252	0.052	0.135	0.264	0.092	0.155	0.207	0.530	0.483	4.945	0.851	0.234	0.250	0.470	1.161	1.360	0.715	1.729	1.708	0.180	0.231	0.623	0.746	0.271	0.834	nan	2.756	0.045	0.073	0.078	0.092	0.291	0.039	0.127	1.760	0.081	0.061
3892	chr18	72153187	72167611	+	0	NA	Intergenic	AluSz|SINE|Alu	-3101	NM_018235	55748	Hs.149185	NM_018235	ENSG00000133313	CNDP2	CN2|CPGL|HEL-S-13|HsT2298|PEPA	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	nan	nan	1.185	2.107	0.920	0.395	1.057	0.347	0.101	0.563	0.376	1.628	2.196	0.339	0.073	1.430	1.430	1.837	2.994	2.515	nan	6.048	2.188	3.100	3.220	0.352	0.603	5.981	nan	1.132	1.155	0.717	1.082	1.675	1.672	0.771	0.678	2.136	1.139	0.370	0.825	0.178	0.282	1.057	1.628	0.086	1.188	0.267	0.128
6147	chr5	4242407	4246965	+	0	NA	Intergenic	Intergenic	-528908	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA	0.334	0.793	0.817	0.173	0.293	0.107	0.086	0.099	0.320	0.138	0.122	0.117	0.320	0.040	0.124	8.054	8.898	14.434	nan	0.327	0.534	0.074	0.079	0.078	0.083	0.161	0.369	nan	0.349	nan	0.338	3.306	5.753	0.051	0.071	0.121	0.252	0.152	nan		0.098	0.041	0.035	0.086	0.117	0.021	0.021	1.676	0.028
4932	chr20	33286327	33298782	+	0	NA	promoter-TSS (NM_001329431)	promoter-TSS (NM_001329431)	8	NM_001329431	58476	Hs.516994	NM_021202	ENSG00000078804	TP53INP2	C20orf110|DOR|PIG-U|PINH|dJ1181N3.1	tumor protein p53 inducible nuclear protein 2	protein-coding	3.705	4.621	2.839	2.108	2.643	1.468	1.127	1.387	0.258	1.312	0.488	2.643	7.181	1.603	0.137	3.255	4.682	3.503	4.915	2.971	nan	4.195	2.131	6.806	7.385	2.232	2.580	3.796	5.439	6.267	5.796	1.061	1.860	2.313	1.904	2.467	nan	1.028	0.683	1.713	3.826	0.353	0.503	1.127	2.643	0.796	1.827	0.619	1.724
4316	chr2	45015155	45072345	+	0	NA	Intergenic	Intergenic	124896	NR_103785	100506108	Hs.503113	NR_103785	ENSG00000236502	SIX3-AS1	SIX3OS	SIX3 antisense RNA 1	ncRNA	1.423	nan	1.552	0.140	0.814	0.395	0.449	0.087	0.051	0.183	0.161	0.544	0.326	0.055	0.106	0.284	0.189	0.205	0.298	nan	0.625	0.856	0.307	0.409	0.399	0.212	0.397	0.370	0.467	0.593	0.391	0.157	0.202	0.501	0.523	1.346	nan	nan	0.622	0.063	0.196	0.165	0.055	0.449	0.544	0.036	0.060	0.053	2.025
8162	chr9	75721301	75800241	+	0	NA	Intergenic	Intergenic	-5876	NM_000700	301	Hs.494173	NM_000700	ENSG00000135046	ANXA1	ANX1|LPC1	annexin A1	protein-coding	nan	nan	nan	0.088	0.633	0.287	0.750	0.767	0.114	0.329	0.190	0.045	0.238	0.909	0.094	1.112	0.761	9.631	nan	0.328	nan	0.107	0.059	2.331	2.296	0.217	0.343	0.435	0.524	0.219	0.079	0.391	0.533	0.964	1.148	0.187	0.399	1.325	0.881	0.027	0.058	0.118	0.024	0.750	0.045	0.004	0.087	0.238	0.047
2516	chr14	29673068	29713474	+	0	NA	Intergenic	Intergenic	-438278	NR_135255	105370424	Hs.375809	NR_135255	ENSG00000257056	LOC105370424	-	uncharacterized LOC105370424	ncRNA	1.716	0.997	0.850	0.442	0.587	0.266	2.896	2.029	0.239	0.287	0.301	1.490	2.791	0.289	0.160	0.252	0.147	0.254	0.200	2.472	2.569	5.122	2.765	0.150	0.125	8.523	9.463	1.181	1.371	1.120	0.603	0.126	0.147	4.969	6.984	0.509	1.266	2.289	1.104	0.105	1.864	1.856	0.657	2.896	1.490	0.442	0.978	0.035	0.148
5911	chr4	56410833	56415005	+	0	NA	promoter-TSS (NM_001267843)	promoter-TSS (NM_001267843)	157	NM_004898	9575	Hs.436975	NM_004898	ENSG00000134852	CLOCK	KAT13D|bHLHe8	clock circadian regulator	protein-coding	nan	2.636	3.292	7.087	7.399	4.847	5.630	3.553	0.542	3.341	2.292	7.032	11.481	4.752	0.079	4.516	6.636	4.269	5.686	8.964	7.563	8.182	3.451	12.701	12.661	7.630	8.375	9.800	12.074	9.180	12.565	3.495	8.465	5.299	4.339	5.860	6.349	8.669	4.717	5.297	8.801	1.402	3.312	5.630	7.032	1.160	5.640	3.716	3.181
2616	chr14	58234776	58239515	+	0	NA	intron (NM_001206920, intron 1 of 7)	intron (NM_001206920, intron 1 of 7)	95447	NM_001306087	341880	Hs.28280	NM_001080455	ENSG00000151812	SLC35F4	C14orf36|c14_5373	solute carrier family 35 member F4	protein-coding	1.635	nan	1.371	0.149	0.339	0.129	0.190	0.032	0.136	0.134	0.036	0.050	0.301	0.024	0.159	5.344	3.786	10.458	1.349	0.315	0.402	0.050	0.013	1.245	1.173	0.131	0.306	0.243	0.222	0.650	0.297	3.289	7.414	0.053	0.085	1.189	1.990	nan	0.398	0.142	0.160	0.020	0.017	0.190	0.050	0.042	0.041	7.238	0.543
3362	chr17	32128898	32138644	+	0	NA	intron (NM_001094, intron 1 of 9)	intron (NM_001094, intron 1 of 9)	-272992	NR_037584	100506677	Hs.652571	NR_037584	ENSG00000265544	AA06	AA02|AA04|AA05	uncharacterized LOC100506677	pseudo	nan	0.924	0.505	0.027	0.247	0.190	0.026	0.077	0.050	0.032	0.093	0.012	1.321	0.056	0.098	1.272	2.116	0.119	0.137	nan	0.265	0.152	0.058	0.408	0.413	0.109	0.251	0.122	0.226	nan	0.111	0.582	0.897	4.989	8.114	0.175	0.260	0.170	0.320	1.395	0.183	2.688	0.025	0.026	0.012	0.041	0.042	0.835	0.050
1408	chr11	46347317	46391741	+	0	NA	intron (NM_003646, intron 1 of 30)	CpG	573	NM_001199266	8525	Hs.502461	NM_003646	ENSG00000149091	DGKZ	DAGK5|DAGK6|DGK-ZETA|hDGKzeta	diacylglycerol kinase zeta	protein-coding	nan	1.442	3.073	1.600	0.817	0.440	1.503	0.227	0.091	0.722	0.486	0.687	4.700	0.317	0.126	3.288	4.733	0.633	0.936	1.888	1.797	1.994	0.786	1.533	1.491	0.564	1.010	0.587	0.798	1.139	0.940	2.793	4.557	2.118	2.229	0.368	nan	1.293	0.738	1.793	0.836	0.908	0.836	1.503	0.687	0.801	0.558	3.505	0.120
6116	chr4_gl000193_random	1383	9278	+	0	NA	Intergenic	Intergenic	83045	NR_038377	441058	Hs.130535	NR_038377		LINC01667	-	long intergenic non-protein coding RNA 1667	ncRNA	nan	1.030	1.122	0.074	0.508	0.164	0.441	0.104	0.040	0.080	0.208	0.045	0.482	0.136	0.266	2.711	2.108	13.714	13.373	0.447	0.671	0.175	0.084	0.781	0.724	0.194	nan	0.012	0.042	0.515	0.146	0.843	1.907	0.144	0.091	0.226	0.324	0.267	0.521	0.035	0.126	0.084	0.051	0.441	0.045	0.018	0.026	0.387	0.073
4224	chr2	15586786	15603030	+	0	NA	intron (NM_015909, intron 21 of 51)	Tigger9b|DNA|TcMar-Tigger	106564	NR_052013	51594	Hs.467759	NM_015909	ENSG00000151779	NBAS	ILFS2|NAG|SOPH	neuroblastoma amplified sequence	protein-coding	0.917	0.858	0.791	0.359	0.303	0.148	0.235	0.382	0.108	0.087	0.162	0.072	0.480	0.074	0.142	0.361	0.226	0.248	0.311	0.260	0.328	0.293	0.176	0.142	0.114	0.556	0.802	0.448	nan	0.392	0.186	8.887	12.854	0.065	0.097	0.404	nan	0.458	0.463	0.261	0.131	0.006	0.160	0.235	0.072	0.118	0.124	6.680	0.162
4249	chr2	22894783	22927002	+	0	NA	Intergenic	Intergenic	151541	NR_110577	102723362	Hs.502887	NR_110577	ENSG00000233587	LINC01884	-	long intergenic non-protein coding RNA 1884	ncRNA	0.607	0.492	0.567	0.090	0.324	0.134	0.095	0.077	0.099	0.145	0.167	0.033	0.431	0.044	0.097	0.407	0.418	3.205	3.470	0.356	0.400	0.202	0.105	1.675	1.732	0.490	0.719	0.276	nan	0.510	0.259	0.199	0.263	0.130	0.096	0.176	0.300	0.737	0.548	0.017	0.075	0.036	0.058	0.095	0.033	0.157	0.034	0.052	0.119
578	chr1	155655988	155684859	+	0	NA	intron (NM_033657, intron 1 of 12)	SVA_F|Other|Other	11538	NM_004632	7818	Hs.516746	NM_004632	ENSG00000132676	DAP3	DAP-3|MRP-S29|MRPS29|bMRP-10	death associated protein 3	protein-coding	nan	nan	2.068	0.938	1.020	0.444	1.225	1.068	0.260	0.838	0.530	1.148	3.691	0.996	0.165	1.772	1.799	2.085	3.143	2.344	nan	2.043	1.123	2.069	2.120	1.293	1.851	1.569	2.622	1.711	1.750	2.660	3.968	1.093	1.464	4.246	7.617	0.864	0.548	0.757	1.858	0.332	0.621	1.225	1.148	0.361	1.179	1.221	2.599
695	chr1	181050073	181111928	+	0	NA	Intergenic	Intergenic	23362	NM_016545	51278	Hs.15725	NM_016545	ENSG00000162783	IER5	SBBI48	immediate early response 5	protein-coding	nan	nan	3.915	0.794	0.846	0.441	2.649	2.339	0.322	0.497	0.321	0.684	2.937	0.787	0.116	1.497	2.171	1.467	3.857	2.169	nan	1.944	0.662	nan	1.072	2.601	3.575	2.062	2.756	1.633	1.716	1.421	2.284	2.620	2.727	0.984	nan	1.516	0.890	1.157	1.845	1.097	1.026	2.649	0.684	0.694	1.001	0.890	0.406
4418	chr2	85761264	85774144	+	0	NA	intron (NM_005911, intron 1 of 8)	intron (NM_005911, intron 1 of 8)	1603	NM_005911	4144	Hs.516157	NM_005911	ENSG00000168906	MAT2A	MATA2|MATII|SAMS2	methionine adenosyltransferase 2A	protein-coding	nan	2.443	nan	3.801	5.697	2.687	4.481	2.067	0.125	2.376	1.309	4.002	8.737	4.158	0.142	6.338	5.999	4.617	6.154	8.118	8.232	6.700	3.570	10.333	10.973	3.397	4.966	7.160	8.580	7.197	8.384	5.529	9.067	3.077	2.895	6.481	7.210	4.503	2.539	4.346	4.528	0.621	2.521	4.481	4.002	1.378	2.227	2.778	2.880
6553	chr5	172190510	172206044	+	0	NA	promoter-TSS (NM_004417)	promoter-TSS (NM_004417)	-74	NM_004417	1843	Hs.171695	NM_004417	ENSG00000120129	DUSP1	CL100|HVH1|MKP-1|MKP1|PTPN10	dual specificity phosphatase 1	protein-coding	2.369	3.177	2.545	1.899	1.398	0.807	1.433	2.098	0.302	1.115	0.555	3.267	5.457	2.292	0.146	1.690	2.621	3.422	nan	3.898	3.098	3.261	2.360	3.195	3.285	2.267	nan	2.812	5.086	2.750	3.052	0.961	1.707	2.000	2.316	2.002	2.069	1.381	1.046	0.744	2.062	0.248	1.119	1.433	3.267	0.760	1.929	0.491	0.443
5372	chr3	52048952	52098063	+	0	NA	Intergenic	Intergenic	16954	NM_001947	1849	Hs.591664	NM_001947	ENSG00000164086	DUSP7	MKPX|PYST2	dual specificity phosphatase 7	protein-coding	1.194	1.324	nan	0.257	0.371	0.225	0.365	0.290	0.063	0.358	0.201	0.310	0.929	0.178	0.057	0.846	1.265	0.847	1.185	1.120	1.150	1.316	0.433	0.588	0.633	0.537	0.870	0.688	1.053	nan	3.771	0.645	0.921	0.845	0.786	1.291	3.144	1.314	0.649	0.293	0.529	0.194	0.313	0.365	0.310	0.461	0.808	0.284	1.278
5167	chr21	46098210	46109138	+	0	NA	intron (NM_144991, intron 1 of 11)	L1MEf|LINE|L1	-1596	NM_181686	353332	Hs.688628	NM_181686	ENSG00000187175	KRTAP12-1	KAP12.1|KRTAP12.1	keratin associated protein 12-1	protein-coding	nan	0.897	1.016	0.225	0.623	0.318	0.825	0.082	0.074	0.444	0.250	0.968	3.396	0.059	0.097	0.312	0.149	0.186	0.208	3.860	3.122	nan	0.281	0.144	0.168	0.128	nan	0.520	0.798	0.952	1.176	0.116	0.220	1.529	1.160	0.096	0.210	4.559	1.898	1.895	1.599	0.167	0.022	0.825	0.968	0.501	0.699	0.018	0.068
3137	chr16	49777364	49790807	+	0	NA	intron (NM_001271620, intron 2 of 7)	intron (NM_001271620, intron 2 of 7)	72564	NM_015069	23090	Hs.443715	NM_015069	ENSG00000102935	ZNF423	Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ	zinc finger protein 423	protein-coding	0.836	1.087	0.881	0.059	0.307	0.168	4.241	0.079	0.059	0.023	0.073	0.054	0.171	0.041	0.063	0.210	0.200	0.063	0.081	0.295	0.363	0.765	0.279	0.135	0.132	0.547	0.978	0.209	0.340	1.089	1.209	0.144	0.157	0.604	0.540	0.322	0.555	1.079	0.802	0.008	0.086	0.127	0.065	4.241	0.054	0.988	0.053	0.031	0.064
1732	chr11	129182267	129196376	+	0	NA	Intergenic	Intergenic	-56560	NM_003658	8538	Hs.591944	NM_003658	ENSG00000043039	BARX2	-	BARX homeobox 2	protein-coding	0.876	1.983	3.449	1.443	0.769	0.337	0.229	0.031	0.045	1.163	0.585	1.402	2.860	0.107	0.094	0.933	1.050	0.392	0.596	0.743	0.806	3.427	1.002	0.616	0.720	0.578	0.941	7.307	7.276	1.548	1.686	1.668	2.134	2.117	1.726	0.270	nan	1.604	1.083	0.412	0.408	0.472	0.056	0.229	1.402	0.217	1.580	1.229	0.189
861	chr1	214400250	214411133	+	0	NA	Intergenic	AluSc8|SINE|Alu	-48874	NM_020197	56950	Hs.66170	NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding	1.451	2.309	1.243	0.753	0.923	0.517	0.547	0.138	0.103	2.030	1.297	0.659	nan	0.049	0.118	0.323	0.316	0.350	0.474	1.036	1.242	nan	0.926	0.446	0.370	1.919	nan	2.530	3.078	0.458	0.355	0.116	0.129	2.595	3.767	0.566	1.099	4.010	1.745	0.031	1.605	1.108	0.088	0.547	0.659	0.054	1.475	0.036	0.239
337	chr1	61349841	61383755	+	0	NA	Intergenic	MER113B|DNA|hAT-Charlie	69650	NR_110617	100996570	Hs.46616	NR_110617	ENSG00000237928	NFIA-AS2	-	NFIA antisense RNA 2	ncRNA	2.363	0.832	nan	0.220	0.475	0.281	0.729	0.337	0.115	0.139	0.122	0.318	1.140	0.023	0.099	0.509	0.385	0.275	0.355	0.782	0.821	0.135	0.069	0.308	0.352	nan	nan	0.775	nan	2.611	2.913	0.188	0.260	0.710	0.472	0.436	1.124	1.186	0.896	0.244	0.139	0.160	0.240	0.729	0.318	1.353	0.162	0.032	0.208
3706	chr18	26722509	26745225	+	0	NA	Intergenic	Intergenic	-976457	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding	0.662	0.867	0.965	0.501	0.192	0.099	0.941	0.180	0.100	0.194	0.145	0.613	1.523	0.051	0.095	0.429	0.343	0.464	nan	1.003	1.158	8.280	4.113	0.145	0.103	0.148	0.261	1.023	1.493	0.461	0.198	0.066	0.131	0.938	1.260	0.346	0.596	1.797	1.002	0.096	0.618	0.172	0.118	0.941	0.613	0.041	0.076	0.017	0.099
3172	chr16	73264239	73268099	+	0	NA	Intergenic	Intergenic	-87823	NM_207385	388289	Hs.371893	NM_207385		C16orf47	-	chromosome 16 open reading frame 47	protein-coding	0.686	1.182	nan	0.228	0.474	0.136	0.099	0.884	0.071	0.323	0.254	0.621	3.005	0.140	0.033	1.245	2.820	14.726	14.073	0.328	0.403	0.144	0.098	1.344	1.330	0.344	0.438	0.188	0.304	0.695	0.446	0.515	0.913	0.077	0.117	0.114	0.190	0.545	0.624	0.302	0.069		0.021	0.099	0.621	0.182	0.202	0.243	0.094
2718	chr14	85046737	85055046	+	0	NA	Intergenic	L1PA16|LINE|L1	-802728	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA	nan	0.718	0.594	0.232	0.217	0.291	0.303	0.146	0.174	0.114	0.149	0.416	0.312	0.027	0.148	0.360	0.239	8.801	2.930	0.335	0.479	0.562	0.156	0.368	0.436	0.257	0.228	0.771	0.762	0.490	0.240	0.145	0.282	0.120	0.139	0.194	0.226	0.949	0.883	0.060	0.096	0.057	0.077	0.303	0.416	0.141	0.025	0.095	0.029
571	chr1	155188296	155198742	+	0	NA	intron (NR_002188, intron 1 of 12)	AluJo|SINE|Alu	3806	NR_002188	2630	Hs.719930	NR_002188	ENSG00000160766	GBAP1	GBAP	glucosylceramidase beta pseudogene 1	pseudo	nan	nan	2.532	2.209	2.540	1.031	2.852	2.534	0.771	1.387	1.041	2.301	8.413	2.105	0.165	3.019	2.549	3.601	5.613	4.385	nan	5.140	2.143	1.650	1.953	2.850	3.574	3.368	5.334	3.498	2.711	3.136	3.960	2.163	2.978	3.517	5.024	2.161	1.109	3.248	4.812	0.509	1.192	2.852	2.301	0.784	2.201	1.828	1.586
6331	chr5	73518329	73595299	+	0	NA	Intergenic	LTR16C|LTR|ERVL	47336	NR_105009	102503429	Hs.519391	NR_105009	ENSG00000248942	LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA	0.958	nan	1.041	0.082	0.299	0.182	0.272	0.340	0.084	0.115	0.087	0.207	0.361	6.455	0.191	0.319	0.303	2.524	2.946	0.354	0.384	nan	0.244	0.137	0.145	2.852	nan	0.324	0.266	0.711	0.526	0.139	0.262	0.829	1.069	0.439	1.596	0.601	0.463	0.104	0.140	0.217	0.110	0.272	0.207	0.138	0.246	0.153	0.535
1190	chr10	102073779	102091849	+	0	NA	intron (NM_016112, intron 2 of 15)	MIR|SINE|MIR	7429	NM_001253837	9033	Hs.159241	NM_016112	ENSG00000107593	PKD2L1	PCL|PKD2L|PKDL|TRPP3	polycystin 2 like 1, transient receptor potential cation channel	protein-coding	nan	nan	1.868	1.116	0.668	0.309	0.085	0.062	0.204	0.396	0.153	0.527	0.238	0.049	0.084	0.242	0.193	0.184	0.194	0.553	0.594	7.875	4.174	0.140	0.128	1.023	nan	0.254	0.372	0.616	0.459	0.120	0.158	0.218	0.255	0.699	nan	1.014	0.609	0.052	0.065	0.047	0.276	0.085	0.527	0.471	0.039	0.005	0.315
5428	chr3	89453328	89461068	+	0	NA	intron (NM_005233, intron 8 of 16)	intron (NM_005233, intron 8 of 16)	300524	NM_182644	2042	Hs.123642	NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding	nan	0.765	0.694	0.045	0.208	0.103	0.232	0.073	0.042	0.222	0.053	0.139	0.168	0.085	0.141	0.166	0.125	9.582	5.464	0.224	0.246	3.520	1.085	0.274	0.344	0.811	1.014	0.132	0.136	0.449	0.126	0.071	0.098	0.271	0.123	0.215	0.395	0.547	0.421	0.035	0.046	0.025		0.232	0.139		0.030	0.026	0.047
6091	chr4	182390513	182456869	+	0	NA	Intergenic	Intergenic	-343389	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA	nan	0.686	nan	0.035	4.175	2.087	0.240	0.061	0.083	0.616	0.389	0.200	0.154	0.106	0.089	0.203	0.111	0.210	0.305	0.410	0.468	13.383	6.052	0.137	0.136	0.091	0.139	0.630	0.499	0.435	0.192	0.085	0.124	3.293	4.207	0.093	0.144	0.751	0.451	0.475	1.137	1.084	0.111	0.240	0.200	0.013	0.325	0.039	0.015
6071	chr4	167318939	167326162	+	0	NA	Intergenic	Intergenic	528140	NM_001204760	7092	Hs.106513	NM_012464	ENSG00000038295	TLL1	ASD6|TLL	tolloid like 1	protein-coding	nan	nan	nan	0.294	1.405	0.597	0.088	0.088	0.088	1.521	1.137	5.305	0.630	0.045	0.118	0.280	0.141	0.219	0.304	0.993	1.236	1.835	1.002	0.123	0.132	0.268	0.270	1.454	1.377	0.220	0.136	0.274	0.689	1.358	0.977	0.195	0.246	1.259	0.638	0.015	0.061	0.353		0.088	5.305	0.026	0.913	0.396	0.034
7200	chr7	23502480	23518570	+	0	NA	promoter-TSS (NM_006547)	promoter-TSS (NM_006547)	-530	NM_006547	10643	Hs.700696	NM_006547	ENSG00000136231	IGF2BP3	CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3	insulin like growth factor 2 mRNA binding protein 3	protein-coding	6.957	1.470	1.707	4.787	4.078	1.985	2.737	5.153	0.609	4.002	2.389	6.987	9.840	7.684	0.282	5.124	4.889	0.787	nan	7.222	6.341	8.199	3.795	14.468	14.612	6.228	7.506	6.283	10.934	10.204	11.906	4.758	9.744	8.026	9.005	8.007	nan	3.571	1.559	3.885	5.353	2.151	4.985	2.737	6.987	0.385	3.822	3.374	3.994
1171	chr10	84375240	84390388	+	0	NA	intron (NM_001165973, intron 3 of 10)	intron (NM_001165973, intron 3 of 10)	-390138	NR_120666	101929590	Hs.733268	NR_120666	ENSG00000225738	NRG3-AS1	C10orf100|Em:AC010157.1	NRG3 antisense RNA 1	ncRNA	0.393	0.594	0.751	0.035	0.119	0.063	0.017	0.055	0.064	0.042	0.082	0.050	0.269	0.036	0.066	0.271	0.209	0.508	0.322	0.180	0.178	0.092	0.067	0.086	0.095	3.296	3.667	0.473	0.739	0.208	0.166	0.063	0.106	0.065	0.050	0.523	1.268	0.186	0.258		0.006	0.025	0.085	0.017	0.050	0.077	0.027		0.049
5715	chr3	179744421	179763473	+	0	NA	intron (NM_001256752, intron 1 of 13)	intron (NM_001256752, intron 1 of 13)	894	NM_001256752	51555	Hs.235331	NM_016559	ENSG00000114757	PEX5L	PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b	peroxisomal biogenesis factor 5 like	protein-coding	1.394	1.085	1.034	1.847	1.361	0.630	0.312	0.114	0.143	3.022	1.789	1.294	6.628	0.068	0.087	1.180	1.591	0.194	0.163	2.407	2.415	6.464	2.723	0.186	0.144	0.270	0.345	2.845	3.744	3.470	3.325	1.374	3.620	0.179	0.174	2.875	4.693	2.039	1.203	0.513	2.306	0.060	0.614	0.312	1.294	0.184	1.178	2.248	1.438
4153	chr19	56090956	56099053	+	0	NA	Intergenic	AluSz|SINE|Alu	-2793	NM_152600	163033	Hs.112529	NM_152600	ENSG00000218891	ZNF579	-	zinc finger protein 579	protein-coding	3.219	2.073	3.748	2.293	7.126	3.695	2.876	0.795	0.039	1.257	0.731	4.330	4.741	5.750	0.170	3.524	4.992	1.620	2.083	5.335	5.328	8.078	2.016	0.890	0.877	2.122	2.839	3.815	5.006	4.981	3.813	1.885	3.260	2.839	2.431	3.422	5.749	2.963	1.415	1.631	3.556	0.694	1.351	2.876	4.330	1.230	1.979	1.672	2.123
236	chr1	39855473	39878931	+	0	NA	intron (NM_012090, intron 52 of 92)	intron (NM_012090, intron 52 of 92)	-7974	NM_015038	643314	Hs.658760	NM_015038	ENSG00000127603	KIAA0754	-	KIAA0754	protein-coding	11.753	nan	1.530	3.300	0.902	0.525	0.887	2.170	0.358	1.087	0.522	1.676	1.409	0.885	0.154	1.004	1.111	0.944	1.615	1.949	1.912	nan	0.460	1.427	1.332	1.183	1.782	8.136	8.983	nan	0.594	1.741	2.875	0.302	0.376	0.945	1.555	1.311	nan	0.444	0.343	0.077	0.327	0.887	1.676	0.103	0.200	1.663	0.332
706	chr1	182666120	182674158	+	0	NA	Intergenic	Intergenic	-28072	NM_001102450	85397	Hs.20982	NM_033345	ENSG00000135824	RGS8	-	regulator of G-protein signaling 8	protein-coding	nan	nan	4.924	0.414	2.035	1.494	1.682	2.459	0.180	0.448	0.291	1.652	1.122	0.040	0.138	1.793	2.463	0.670	0.716	9.709	8.557	0.999	0.228	nan	0.998	3.384	3.629	0.914	0.857	2.902	3.249	1.237	4.087	4.324	4.076	2.536	7.615	1.070	0.757	4.326	0.975	1.997	1.083	1.682	1.652	1.059	0.281	3.095	1.646
4550	chr2	153572492	153576817	+	0	NA	promoter-TSS (NM_017892)	promoter-TSS (NM_017892)	247	NR_024526	151188	Hs.643580	NM_152522	ENSG00000177917	ARL6IP6	AIP-6|AIP6|PFAAP1	ADP ribosylation factor like GTPase 6 interacting protein 6	protein-coding	8.676	3.621	6.614	7.899	7.214	3.370	5.020	3.414	0.260	3.170	1.412	6.872	18.949	4.735	0.147	9.331	9.627	10.528	13.418	10.278	8.461	9.950	4.505	21.592	22.815	6.369	7.902	9.077	11.296	12.935	16.447	5.801	10.351	6.601	5.867	11.840	11.454	3.461	1.785	6.370	4.758	1.414	3.315	5.020	6.872	2.178	1.619	2.781	3.256
1608	chr11	105296615	105306163	+	0	NA	Intergenic	Intergenic	-179411	NM_000829	2893	Hs.503743	NM_000829	ENSG00000152578	GRIA4	GLUR4|GLUR4C|GLURD|GluA4	glutamate ionotropic receptor AMPA type subunit 4	protein-coding	0.388	0.675	0.490	0.102	0.163	0.100	0.068	0.078		0.101	0.177	0.059	0.236	0.048	0.098	10.133	10.880	0.170	0.343	0.189	0.180	0.371	0.206	0.334	0.309	1.415	1.438	0.347	0.372	0.716	0.548	0.186	0.336	0.079	0.079	0.269	0.490	0.356	0.379	0.038	0.119	0.020	0.025	0.068	0.059	0.010	0.106	0.042	0.053
2474	chr13	114739960	114759166	+	0	NA	intron (NM_007368, intron 23 of 23)	intron (NM_007368, intron 23 of 23)	93891	NM_001320822	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding	0.656	nan	0.642	0.735	0.189	0.142	1.028	0.137	0.036	0.292	0.181	0.100	1.982	0.039	0.049	0.528	0.641	0.211	0.292	0.841	0.785	1.493	0.387	0.165	0.180	0.059	0.160	1.634	1.775	0.294	0.242	0.365	0.365	0.452	0.352	0.178	0.273	0.242	0.200	5.119	1.337	0.099	0.041	1.028	0.100	0.123	0.523	0.132	0.045
3232	chr17	1010745	1030429	+	0	NA	intron (NM_001322841, intron 2 of 22)	intron (NM_001322841, intron 2 of 22)	-8247	NM_001092	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding	1.779	2.372	1.465	1.799	1.732	0.913	3.423	0.461	0.163	1.100	0.387	2.369	3.833	0.424	0.086	0.717	1.266	1.057	2.161	2.093	2.201	3.170	1.438	0.766	0.901	0.703	1.240	3.100	4.508	0.943	0.975	0.915	1.655	1.323	1.294	0.789	1.095	1.042	0.671	1.541	1.162	0.484	0.239	3.423	2.369	0.338	4.058	1.031	0.270
7923	chr8	127816815	127824026	+	0	NA	Intergenic	L1MA4A|LINE|L1	-204979	NR_045262	100750225	Hs.571530	NR_045262	ENSG00000253438	PCAT1	PCA1|PCAT-1	prostate cancer associated transcript 1 (non-protein coding)	ncRNA	nan	nan	nan	0.642	0.464	0.134	0.072	0.101	0.114	0.085	0.079	0.614	nan	0.150	0.040	0.374	0.253	0.550	0.745	0.871	0.907	1.060	0.457	nan	nan	6.712	9.625	1.819	2.563	0.341	0.183	0.596	0.606	0.080	0.113	0.155	0.359	1.110	0.612	0.035	0.283	0.038	0.083	0.072	0.614	1.003	1.014	0.106	0.034
1438	chr11	61319914	61371573	+	0	NA	intron (NM_001252065, intron 1 of 9)	intron (NM_001252065, intron 1 of 9)	2601	NM_004200	9066	Hs.131188	NM_004200	ENSG00000011347	SYT7	IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII	synaptotagmin 7	protein-coding	nan	0.921	1.214	0.612	0.504	0.269	0.337	0.090	0.053	0.362	0.184	0.774	1.905	0.141	0.082	1.566	2.636	0.161	0.263	1.512	1.619	2.271	0.657	0.229	0.256	0.668	1.023	4.084	4.262	0.854	0.751	0.870	1.155	1.013	0.800	0.567	1.169	1.694	0.973	0.951	1.329	0.288	0.190	0.337	0.774	0.329	1.419	0.307	0.201
1903	chr12	31667775	31676500	+	0	NA	intron (NM_001308339, intron 1 of 22)	intron (NM_001308339, intron 1 of 22)	-70720	NR_046909	100874249	Hs.627628	NR_046909	ENSG00000255867	DENND5B-AS1	-	DENND5B antisense RNA 1	ncRNA	1.850	nan	2.135	0.192	0.550	0.240	1.866	0.377	0.018	0.470	0.528	0.359	0.755	0.236	0.135	1.073	1.790	0.880	1.231	1.399	1.338	2.230	0.618	0.777	0.834	1.332	1.892	0.310	0.331	0.756	0.493	0.283	0.531	11.049	11.152	0.641	1.327	1.773	1.196	0.234	0.133	3.868	0.237	1.866	0.359	0.077	1.423	0.102	0.386
6957	chr6	127835644	127842558	+	0	NA	intron (NM_001012279, intron 1 of 11)	intron (NM_001012279, intron 1 of 11)	1399	NM_001012279	387104	Hs.319247	NM_001012279	ENSG00000214338	SOGA3	C6orf174|dJ403A15.3	SOGA family member 3	protein-coding	7.443	2.800	0.988	6.876	5.883	2.841	7.124	0.140	0.114	2.775	1.382	5.985	13.156	1.022	0.082	7.225	7.955	0.162	0.304	14.037	9.538	16.545	7.427	0.365	0.244	5.160	5.501	6.448	11.293	14.863	18.297	2.637	4.544	11.833	8.511	5.248	7.045	3.201	1.919	7.590	6.300	1.878	3.540	7.124	5.985	1.146	2.949	1.964	2.030
4766	chr2	236438962	236457958	+	0	NA	intron (NM_001037131, intron 1 of 17)	intron (NM_001037131, intron 1 of 17)	34065	NR_131900	100506749	Hs.684184	NR_131900	ENSG00000235529	AGAP1-IT1	-	AGAP1 intronic transcript 1	ncRNA	1.152	nan	1.713	0.795	0.358	0.144	0.302	0.075	0.025	0.133	0.120	1.569	0.706	0.120	0.088	0.422	0.480	0.298	0.469	0.901	0.850	0.396	0.136	0.544	0.512	0.431	0.703	1.650	nan	6.292	6.288	1.761	2.647	0.215	0.241	0.088	0.145	0.332	0.368	0.151	0.334	0.040	0.142	0.302	1.569	0.144	0.037	3.205	0.039
7045	chr6	151175711	151188937	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-4491	NM_001242769	25902	Hs.591343	NM_015440	ENSG00000120254	MTHFD1L	FTHFSDC1|MTC1THFS|dJ292B18.2	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	nan	1.384	1.971	1.514	1.494	0.652	2.141	1.019	0.196	0.561	0.215	1.420	2.619	2.875	0.149	1.975	2.209	3.431	8.460	1.630	nan	4.632	1.995	3.578	3.716	0.180	0.355	2.018	3.202	2.217	2.466	0.867	1.848	0.942	0.682	2.046	nan	0.602	0.435	0.807	0.678	0.158	0.691	2.141	1.420	0.310	0.881	0.331	0.702
7063	chr6	156348024	156355666	+	0	NA	Intergenic	Intergenic	83914	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA	nan	0.688	0.649	0.131	0.847	0.377	0.189	0.068	0.043	0.103	0.073	0.748	0.346	0.066	0.069	2.833	3.241	1.511	0.670	0.380	nan	7.304	5.750	1.225	1.120	0.070	0.220	0.528	0.858	0.703	0.329	0.835	1.623	0.177	0.211	0.410	nan	0.231	0.287	0.091	0.136	0.038	0.802	0.189	0.748	0.032	0.344	0.315	0.189
7504	chr7	138718475	138731896	+	0	NA	Intergenic	AluSp|SINE|Alu	-4410	NM_080660	92092	Hs.512833	NM_080660	ENSG00000146858	ZC3HAV1L	C7orf39	zinc finger CCCH-type containing, antiviral 1 like	protein-coding	nan	nan	nan	1.758	1.854	0.853	0.609	0.199	0.100	1.845	0.964	3.159	1.611	1.551	0.153	1.554	1.668	1.075	1.661	2.428	2.105	8.237	3.663	2.903	2.900	1.052	nan	3.133	4.486	nan	0.889	1.689	2.260	5.110	5.142	2.005	2.313	2.056	nan	1.032	0.782	1.154	0.597	0.609	3.159	0.538	1.024	0.627	0.762
6276	chr5	57071257	57087859	+	0	NA	Intergenic	Intergenic	115431	NR_109900	101928539	Hs.639385	NR_109900	ENSG00000249584	LOC101928539	-	uncharacterized LOC101928539	ncRNA	nan	nan	0.732	0.049	0.229	0.174	0.184	1.042	0.171	0.057	0.094	0.029	0.392	4.338	0.183	0.205	0.117	0.606	2.314	0.136	0.210	nan	0.092	0.127	0.169	0.313	0.423	0.170	0.186	nan	0.171	0.060	0.129	0.101	0.145	0.409	1.094	0.310	0.441	0.023	0.102	0.006	0.043	0.184	0.029	0.035	0.018	0.018	0.430
2776	chr14	102427516	102435007	+	0	NA	exon (NM_001376, exon 1 of 78)	exon (NM_001376, exon 1 of 78)	396	NM_001376	1778	Hs.614080	NM_001376	ENSG00000197102	DYNC1H1	CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22	dynein cytoplasmic 1 heavy chain 1	protein-coding	6.191	2.152	2.649	4.827	2.173	1.109	3.927	3.891	0.592	1.363	1.024	2.753	6.655	1.926	0.112	2.430	2.137	4.010	5.933	6.694	5.834	3.660	1.109	3.255	3.231	3.335	4.163	7.502	13.510	6.416	6.204	1.869	4.144	3.417	4.821	2.819	3.111	1.989	1.070	5.384	2.961	0.531	1.219	3.927	2.753	1.473	2.078	0.777	1.482
6410	chr5	114493995	114507920	+	0	NA	intron (NM_018700, intron 1 of 9)	THE1D-int|LTR|ERVL-MaLR	4703	NM_001300759	55521	Hs.519514	NM_018700	ENSG00000152503	TRIM36	HAPRIN|RBCC728|RNF98	tripartite motif containing 36	protein-coding	1.164	1.687	1.227	1.463	1.051	0.599	0.497	0.585	0.105	0.418	0.369	0.860	2.509	0.530	0.119	1.448	1.881	1.689	1.963	2.015	1.531	8.125	2.409	1.026	0.973	1.185	nan	1.519	2.282	0.779	0.940	0.868	1.808	1.974	1.488	0.263	0.315	0.826	0.584	0.467	1.354	0.288	0.343	0.497	0.860	0.223	1.072	0.894	0.054
4443	chr2	98609587	98616345	+	0	NA	promoter-TSS (NM_015348)	promoter-TSS (NM_015348)	-612	NM_015348	23505	Hs.469376	NM_015348	ENSG00000075568	TMEM131	CC28|PRO1048|RW1|YR-23	transmembrane protein 131	protein-coding	3.414	2.228	3.186	5.051	2.734	1.300	3.461	1.218	0.212	1.483	0.748	6.912	6.900	1.900	0.089	3.567	4.172	3.837	4.300	7.406	7.557	6.761	2.601	6.688	7.248	1.704	2.296	8.367	9.528	3.529	3.518	2.067	3.820	2.720	1.723	3.901	3.412	1.781	1.148	2.501	2.425	0.367	1.485	3.461	6.912	0.688	1.935	1.456	0.972
7747	chr8	73654365	73661921	+	0	NA	intron (NR_110656, intron 1 of 2)	MER77B|LTR|ERVL	13863	NR_110656	101926908	Hs.680588	NR_110656	ENSG00000253726	LOC101926908	-	uncharacterized LOC101926908	ncRNA	1.890	1.016	3.426	1.343	1.382	0.722	0.170	0.139	0.021	1.319	0.422	1.416	8.017	0.087	0.073	1.930	2.891	4.958	4.455	1.310	1.336	6.243	1.802	5.653	5.909	1.232	1.536	1.306	1.713	0.445	0.233	3.243	5.528	6.354	8.827	0.435	0.974	2.130	1.308	0.472	7.138	1.872	0.116	0.170	1.416		0.640	7.712	0.277
4759	chr2	235577634	235604438	+	0	NA	promoter-TSS (NR_132376)	promoter-TSS (NR_132376)	-276	NR_132376	106144537	Hs.580616	NR_132376	ENSG00000280744	LINC01173	-	long intergenic non-protein coding RNA 1173	ncRNA	1.112	nan	1.389	5.056	6.894	3.838	1.724	0.584	0.072	1.979	1.341	9.460	6.432	0.064	0.087	1.138	1.500	0.705	1.801	2.113	2.226	5.886	3.249	0.361	0.283	1.059	1.355	4.235	nan	0.591	0.365	0.868	1.851	1.661	1.552	0.392	0.658	2.733	1.073	3.732	0.861	0.531	1.493	1.724	9.460	0.137	0.734	2.545	0.055
1728	chr11	128388397	128404065	+	0	NA	intron (NR_120581, intron 1 of 3)	MIRb|SINE|MIR	194	NR_120581	101929517	Hs.562320	NR_120581	ENSG00000254588	LOC101929517	-	uncharacterized LOC101929517	ncRNA	1.075	1.198	1.081	0.776	1.400	0.605	0.594	1.544	0.093	1.287	0.704	1.031	2.320	0.654	0.106	0.875	1.372	0.974	1.582	1.893	1.895	2.210	0.659	0.245	0.294	0.270	0.341	2.217	2.867	0.619	0.484	1.002	1.282	3.454	3.765	0.620	nan	1.641	0.950	0.989	0.011	0.928	0.269	0.594	1.031		0.531	0.208	0.758
3763	chr18	42255320	42264278	+	0	NA	promoter-TSS (NM_001130110)	promoter-TSS (NM_001130110)	-339	NM_001130110	26040	Hs.435458	NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding	nan	2.544	0.842	3.367	3.183	1.571	9.074	1.480	0.109	1.486	0.889	4.615	8.180	0.072	0.057	3.740	4.937	3.429	4.451	9.687	7.684	3.310	1.537	0.103	0.074	1.892	2.595	1.986	3.535	4.722	5.698	1.524	3.794	5.330	4.665	0.697	nan	4.659	2.312	4.332	1.340	2.287	3.590	9.074	4.615	1.560	1.700	1.907	0.551
8200	chr9	92930104	92950832	+	0	NA	Intergenic	Intergenic	-136687	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA	0.770	nan	0.920	3.742	0.593	0.341	0.178	0.062	0.031	0.764	0.341	3.846	1.425	0.057	0.064	0.539	0.646	0.218	nan	1.263	1.332	3.762	1.876	0.129	0.115	0.172	0.269	2.894	1.726	0.209	0.071	0.120	0.192	1.547	1.586	0.155	0.246	2.852	1.190	0.294	0.145	0.238	0.062	0.178	3.846	0.042	1.019	0.038	0.024
3925	chr19	479352	490081	+	0	NA	Intergenic	L2a|LINE|L2	-9733	NM_182577	284451	Hs.104777	NM_182577	ENSG00000181781	ODF3L2	C19orf19	outer dense fiber of sperm tails 3 like 2	protein-coding	1.966	1.983	3.093	2.338	2.191	1.467	1.903	0.621	0.289	1.285	0.583	2.085	5.002	1.106	0.064	1.076	1.753	1.225	1.930	4.137	3.571	3.633	0.940	1.340	1.295	1.021	1.644	2.085	nan	2.927	3.636	0.969	1.511	3.404	3.792	0.824	1.265	3.414	1.802	2.946	1.698	0.434	1.086	1.903	2.085	0.800	1.155	0.536	0.230
4981	chr20	47114915	47119575	+	0	NA	Intergenic	Intergenic	128591	NR_026958	284749	Hs.299080	NR_026958	ENSG00000235621	LINC00494	-	long intergenic non-protein coding RNA 494	ncRNA	nan	nan	2.035	0.019	0.274	0.115	0.552	0.129	0.034	0.033	0.052	0.151	2.076	0.069	0.111	0.633	0.382	0.158	0.284	0.824	0.729	nan	0.127	0.177	0.190	4.997	5.248	0.190	0.173	nan	3.367	0.304	0.316	0.218	0.547	0.275	0.616	0.513	0.445	0.264	0.335		0.275	0.552	0.151	3.586	0.015	0.126	0.109
1180	chr10	93939389	93965688	+	0	NA	intron (NM_014912, intron 2 of 9)	(TTTA)n|Simple_repeat|Simple_repeat	50498	NM_001178137	22849	Hs.131683	NM_014912	ENSG00000107864	CPEB3	-	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.770	0.720	0.834	0.252	0.434	0.207	0.078	0.232	0.147	1.097	0.703	0.341	0.292	0.045	0.084	0.321	0.335	0.243	0.361	0.305	0.367	4.339	2.285	0.154	0.162	0.452	0.724	nan	1.119	0.344	0.225	0.123	0.210	0.270	0.299	0.450	1.062	1.337	0.659	0.248	0.372	0.120	0.051	0.078	0.341	0.011	0.323	0.050	0.620
3374	chr17	35860339	35881016	+	0	NA	intron (NM_007026, intron 1 of 2)	intron (NM_007026, intron 1 of 2)	20726	NM_007026	11072	Hs.91448	NM_007026	ENSG00000276023	DUSP14	MKP-L|MKP6	dual specificity phosphatase 14	protein-coding	nan	1.043	0.714	0.068	0.483	0.263	0.288	0.178	0.094	0.187	0.174	0.209	0.416	0.121	0.100	3.835	3.676	1.397	1.274	nan	0.601	0.448	0.154	0.763	0.690	0.525	0.743	0.423	0.544	nan	3.169	1.242	2.067	0.191	0.147	0.781	1.429	0.492	0.529	0.121	0.169	0.042	0.219	0.288	0.209	0.221	0.063	1.804	0.313
430	chr1	107597557	107602303	+	0	NA	exon (NM_018137, exon 1 of 1)	exon (NM_018137, exon 1 of 1)	663	NM_018137	55170	Hs.26006	NM_018137	ENSG00000198890	PRMT6	HRMT1L6	protein arginine methyltransferase 6	protein-coding	6.389	nan	nan	3.409	3.571	1.857	4.649	1.152	0.272	1.718	0.984	3.477	11.551	2.532	0.069	2.812	3.573	3.439	4.913	6.831	nan	9.870	3.650	5.735	6.088	8.007	10.110	nan	nan	6.650	8.137	1.709	3.570	4.104	2.919	6.903	nan	3.920	2.352	4.414	1.141	0.644	2.149	4.649	3.477	2.224	4.171	0.562	1.874
7870	chr8	108167442	108176304	+	0	NA	Intergenic	Intergenic	176870	NM_001314051	284	Hs.369675	NM_001146	ENSG00000154188	ANGPT1	AGP1|AGPT|ANG1	angiopoietin 1	protein-coding	1.562	nan	nan	8.556	0.371	0.199	0.361	0.219	0.145	0.760	0.458	0.040	4.372	0.073	0.127	0.414	0.361	0.301	0.275	1.467	1.749	8.074	3.970	0.776	0.543	3.470	nan	4.713	nan	nan	0.238	0.153	0.328	7.206	9.950	0.256	nan	2.298	1.211	1.114	0.110	1.691	0.270	0.361	0.040	0.055	0.264	0.079	0.028
447	chr1	111078988	111109283	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-32338	NM_005549	3744	Hs.248140	NM_005549	ENSG00000143105	KCNA10	Kcn1|Kv1.8	potassium voltage-gated channel subfamily A member 10	protein-coding	nan	0.623	1.083	0.119	0.177	0.148	0.262	0.088	0.066	0.063	0.079	0.055	0.593	0.043	0.087	3.605	4.220	0.158	0.173	0.397	nan	0.826	0.334	0.178	0.175	1.581	2.412	0.368	0.443	0.806	0.736	0.457	0.507	0.342	0.334	0.159	0.272	0.863	0.653	0.028	0.137	0.072	0.567	0.262	0.055	0.381	0.137	0.122	0.049
3602	chr17	78443109	78476354	+	0	NA	Intergenic	Intergenic	-9327	NM_002522	4884	Hs.514556	NM_002522	ENSG00000171246	NPTX1	NP1	neuronal pentraxin 1	protein-coding	1.160	0.920	2.344	2.003	0.729	0.317	1.164	0.092	0.078	0.223	0.150	4.346	2.071	0.118	0.084	0.585	0.623	0.233	0.295	4.205	3.323	1.786	0.495	0.266	0.290	nan	1.360	2.228	3.463	1.144	1.169	0.526	0.608	0.442	0.368	1.937	3.000	nan	0.653	1.023	1.727	0.057	0.955	1.164	4.346	0.301	0.766	0.188	1.364
1446	chr11	62192021	62213310	+	0	NA	intron (NM_024060, intron 5 of 5)	intron (NM_024060, intron 5 of 5)	16158	NM_003357	7356	Hs.523732	NM_003357	ENSG00000149021	SCGB1A1	CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1	secretoglobin family 1A member 1	protein-coding	nan	0.747	0.598	0.383	0.374	0.140	0.533	0.329	0.224	0.213	0.138	0.233	0.777	0.169	0.104	1.295	1.972	0.613	0.954	0.868	0.910	2.388	0.846	0.813	0.836	0.395	0.761	0.423	0.491	0.444	0.205	2.724	3.562	0.433	0.766	0.390	0.921	0.630	0.616	0.318	0.379	0.054	0.317	0.533	0.233	0.196	0.100	4.422	0.139
3258	chr17	7151735	7157357	+	0	NA	promoter-TSS (NM_203415)	promoter-TSS (NM_203415)	449	NM_001143775	23399	Hs.513913	NM_015343	ENSG00000175826	CTDNEP1	DULLARD|HSA011916|NET56	CTD nuclear envelope phosphatase 1	protein-coding	4.924	2.650	3.176	2.890	4.949	2.820	3.732	2.026	0.305	1.846	0.772	4.903	6.415	11.592	0.368	5.507	6.278	4.941	7.330	8.498	7.064	6.270	3.768	7.646	7.922	3.998	4.957	6.243	7.957	3.798	3.708	2.822	4.172	3.119	3.870	6.761	9.873	2.353	1.087	3.879	3.287	0.591	2.119	3.732	4.903	1.622	4.366	1.414	3.469
8308	chr9	135142234	135148411	+	0	NA	intron (NM_015046, intron 24 of 25)	intron (NM_015046, intron 24 of 25)	85050	NM_015046	23064	Hs.460317	NM_015046	ENSG00000107290	SETX	ALS4|AOA2|SCAR1|bA479K20.2	senataxin	protein-coding	nan	1.145	1.193	0.617	0.454	0.363	0.645	0.283	0.103	0.231	0.325	0.345	0.776	0.246	0.103	0.413	0.239	0.934	1.804	0.967	0.919	nan	0.248	1.600	1.591	0.594	0.820	2.271	2.737	1.155	0.720	0.223	0.204	1.317	9.326	0.523	0.947	0.942	0.411	0.449	0.088	0.062	0.063	0.645	0.345	0.330	0.870	0.032	0.179
6881	chr6	101798324	101806638	+	0	NA	Intergenic	Intergenic	-44380	NM_175768	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding	0.841	nan	nan	0.202	0.247	0.154	0.122	0.182	0.098	0.095	0.055	0.057	0.218	0.039	0.096	0.694	0.400	7.765	3.294	0.394	nan	0.132	0.113	0.256	0.173	0.357	0.560	0.258	0.311	nan	0.176	0.248	0.300	0.129	0.115	0.315	0.410	0.332	0.362	0.041	0.108	0.057	0.039	0.122	0.057	0.011	0.024	0.120	0.089
7180	chr7	16327866	16345429	+	0	NA	intron (NM_001101426, intron 5 of 9)	intron (NM_001101426, intron 5 of 9)	86536	NR_038947	100506025	Hs.649029	NR_038946	ENSG00000229688	ISPD-AS1	-	ISPD antisense RNA 1	ncRNA	nan	1.007	nan	0.120	0.189	0.064	0.065	0.140	0.037	0.134	0.122	0.061	0.265	0.075	0.142	nan	0.645	6.137	9.555	0.379	0.389	0.179	0.079	0.608	0.726	0.466	0.720	0.306	0.385	0.278	0.138	0.393	1.208	0.072	0.077	0.513	1.569	0.457	0.552	0.019	0.040	0.011	0.036	0.065	0.061	0.022	0.145	1.170	0.211
6303	chr5	69646395	69654006	+	0	NA	intron (NR_027386, intron 3 of 5).2	intron (NR_027386, intron 3 of 5).2	-60997	NR_033417	653238	Hs.607501	NM_001098729		GTF2H2B	-	general transcription factor IIH subunit 2B (pseudogene)	pseudo	0.618	1.173	0.372	0.127	0.285	0.112	0.355	0.060	0.063	1.856	1.170	0.141	0.244	0.043	0.108	0.268	0.236	0.126	0.303	0.253	0.354	6.826	6.391	0.121	0.115	2.433	2.752	0.192	0.201	0.424	0.131	0.052	0.141	6.091	7.914	0.114	0.178	0.933	0.481	0.007	0.163	3.679	0.025	0.355	0.141	0.088	0.013	0.039	0.017
6594	chr6	5604677	5616933	+	0	NA	intron (NM_006567, intron 5 of 6)	MER2|DNA|TcMar-Tigger	84700	NR_110842	101927950	Hs.571136	NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA	1.061	0.743	1.028	0.558	0.386	0.274	0.189	0.157	0.118	0.399	0.287	0.329	0.159	0.071	0.080	0.382	0.324	0.203	0.269	0.414	0.467	3.334	0.802	0.269	0.224	0.489	0.661	1.122	0.925	0.478	0.156	0.121	0.210	1.040	1.215	0.335	0.996	1.756	0.993	0.018	0.094	0.156	0.051	0.189	0.329	0.072	2.988	0.024	0.107
438	chr1	108190047	108242401	+	0	NA	intron (NM_006113, intron 19 of 26)	intron (NM_006113, intron 19 of 26)	14902	NM_001079874	10451	Hs.267659	NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding	1.085	nan	nan	0.135	0.410	0.204	0.155	0.666	0.157	0.057	0.095	0.062	1.212	0.049	0.113	0.284	0.218	0.384	1.012	0.337	nan	4.383	1.417	0.326	0.338	1.926	2.457	nan	nan	0.648	0.328	0.191	0.221	0.509	0.516	0.445	nan	0.530	0.482	2.540	0.074	0.098	0.043	0.155	0.062	0.086	0.068	0.081	0.245
5399	chr3	71613147	71636024	+	0	NA	intron (NM_001012505, intron 2 of 6)	intron (NM_001012505, intron 2 of 6)	8319	NM_001244808	27086	Hs.59368	NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding	1.672	0.909	2.165	1.322	0.878	0.409	0.582	0.464	0.070	1.350	0.634	1.183	3.179	0.205	0.075	0.574	0.709	3.228	nan	1.464	1.449	1.663	0.785	2.320	2.416	0.099	0.145	1.995	3.354	6.398	6.787	0.475	1.341	2.194	1.615	0.365	nan	1.409	0.817	0.176	1.321	0.578	1.120	0.582	1.183	0.217	1.616	0.626	0.168
1022	chr10	12539909	12611235	+	0	NA	intron (NM_020397, intron 1 of 9)	intron (NM_020397, intron 1 of 9)	-45180	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA	nan	1.682	0.489	3.247	0.568	0.316	0.548	0.216	0.164	0.677	0.354	2.054	3.601	0.058	0.081	0.362	0.242	0.246	0.510	1.674	1.765	4.070	1.657	0.155	0.146	0.542	0.758	3.729	5.289	0.253	0.164	0.187	0.292	0.403	0.400	0.163	0.324	1.321	0.723	1.231	0.913	0.080	0.084	0.548	2.054	0.054	0.600	0.090	0.095
4569	chr2	163692851	163697612	+	0	NA	promoter-TSS (NM_033272)	promoter-TSS (NM_033272)	26	NM_173162	90134	Hs.657413	NM_033272	ENSG00000184611	KCNH7	ERG3|HERG3|Kv11.3	potassium voltage-gated channel subfamily H member 7	protein-coding	2.965	3.981	nan	5.512	6.354	3.913	1.101	0.161		2.448	1.958	3.863	16.574	0.342	0.080	0.412	0.361	1.841	0.901	7.496	5.790	7.699	3.089	5.265	5.346	4.199	4.642	4.394	7.659	1.648	2.468	0.236	0.487	5.531	4.469	0.440	0.888	2.450	1.558	7.182	3.083	1.475	2.658	1.101	3.863	1.308	1.952	0.082	0.155
5861	chr4	37454448	37489185	+	0	NA	intron (NM_001104629, intron 1 of 3)	intron (NM_001104629, intron 1 of 3)	16264	NM_001104629	55286	Hs.107527	NM_018302	ENSG00000154274	C4orf19	-	chromosome 4 open reading frame 19	protein-coding	0.627	0.549	0.529	0.225	0.159	0.097	0.177	0.086	0.083	0.172	0.154	0.038	0.498	0.040	0.075	0.718	0.702	3.755	6.499	0.285	0.293	0.131	0.067	0.758	0.825	0.511	0.716	0.280	0.348	0.442	0.253	1.435	2.771	0.054	0.066	0.098	0.161	0.610	0.658	0.008	0.194	0.022	0.168	0.177	0.038	0.014	0.008	1.725	0.086
4395	chr2	68544954	68548262	+	0	NA	5' UTR (NM_001111101, exon 1 of 3)	5' UTR (NM_001111101, exon 1 of 3)	575	NM_001111101	25927	Hs.212885	NM_015463	ENSG00000119865	CNRIP1	C2orf32|CRIP1	cannabinoid receptor interacting protein 1	protein-coding	10.088	2.240	nan	1.981	2.306	1.684	9.262	3.883	0.344	3.181	1.854	3.006	6.656	0.163	0.113	1.148	0.909	0.194	0.770	10.636	8.312	13.596	4.859	0.235	0.302	7.736	9.422	8.440	16.355	17.646	21.003	2.751	2.483	2.241	1.997	11.375	11.558	4.439	3.514	2.682	3.337	0.423	1.621	9.262	3.006	1.240	5.703	0.782	2.656
953	chr1	243522585	243531733	+	0	NA	intron (NM_006642, intron 12 of 17)	intron (NM_006642, intron 12 of 17)	17681	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA	nan	1.144	nan	0.230	0.494	0.124	0.124	0.098	0.105	0.120	0.162	0.287	0.268	0.035	0.045	0.504	0.322	0.432	0.505	0.392	0.577	0.346	0.225	0.432	0.415	5.603	5.556	0.200	0.222	0.675	0.329	0.130	0.206	0.143	0.164	0.429	0.577	0.453	0.461	0.036	0.069	0.011	0.052	0.124	0.287	0.126	0.034	0.139	0.160
5515	chr3	124552231	124559330	+	0	NA	intron (NM_002213, intron 5 of 14)	intron (NM_002213, intron 5 of 14)	50372	NM_002213	3693	Hs.13155	NM_002213	ENSG00000082781	ITGB5	-	integrin subunit beta 5	protein-coding	1.524	nan	1.178	1.055	1.570	0.647	1.207	1.649	0.191	1.981	1.369	1.779	0.883	0.061	0.040	1.240	1.619	0.420	0.780	3.502	3.059	9.317	3.200	2.135	2.252	0.389	nan	2.642	2.369	1.611	1.945	0.289	0.731	0.897	0.615	0.358	0.645	1.521	1.194	0.799	2.117	0.095	0.395	1.207	1.779	0.343	0.415	0.280	0.158
8362	chrUn_gl000223	148522	151638	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-30350	NM_001330514	7574	Hs.489608	NM_019591	ENSG00000198393	ZNF26	HEL-179|KOX20	zinc finger protein 26	protein-coding	1.995	nan	1.487	1.625	1.772	0.713	2.209	0.675	0.109	1.154	0.698	2.884	3.429	3.963	0.093	0.190	0.792	0.172	0.409	2.907	2.718	3.801	1.022	4.820	4.645	0.767	1.330	2.617	3.359	1.992	2.095	1.604	1.762	1.205	0.824	1.506	2.321	0.069	0.106	2.144	0.515	0.217	13.019	2.209	2.884	0.616	1.632	0.476	0.638
5991	chr4	112711833	112717880	+	0	NA	Intergenic	Intergenic	-351697	NM_152400	132720	Hs.23439	NM_152400	ENSG00000174749	C4orf32	-	chromosome 4 open reading frame 32	protein-coding	0.688	0.782	0.480	0.083	0.217	0.090	0.148	0.112	0.161	0.124	0.041	0.020	0.214	0.035	0.075	1.798	1.689	12.416	8.944	0.112	0.250	0.090	0.019	0.396	0.430	0.196	0.284	0.206	0.271	0.372	0.105	0.774	2.683	0.163	0.176	0.246	0.924	0.048	0.129	0.009	0.014	0.046	0.027	0.148	0.020		0.012	1.853	0.061
6031	chr4	140876416	140897654	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	188198	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding	0.938	0.974	0.972	0.291	1.445	0.701	0.235	0.409	0.129	0.317	0.218	0.643	0.971	0.036	0.073	0.305	0.222	0.318	0.395	0.490	0.519	0.814	0.318	0.112	0.103	4.074	4.094	0.426	0.483	0.371	0.164	0.186	0.279	1.303	1.679	0.796	2.125	1.252	0.673	0.930	0.334	0.346	0.139	0.235	0.643	0.110	0.053	0.075	0.465
6201	chr5	19873432	19886864	+	0	NA	intron (NM_001291957, intron 1 of 12)	intron (NM_001291957, intron 1 of 12)	6233	NM_001291957	1016	Hs.317632	NM_004934	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18	protein-coding	nan	nan	nan	0.257	0.173	0.107	0.110	0.321	0.228	0.317	0.271	0.258	nan	0.032	0.106	0.335	0.204	0.187	0.464	0.430	0.515	0.143	0.085	0.114	0.068	nan	6.561	0.374	0.531	1.420	0.873	0.106	0.178	0.191	0.488	0.341	nan	0.491	0.424	0.025	0.066	0.035	0.002	0.110	0.258	0.117	0.577	0.044	0.165
1560	chr11	85778333	85781297	+	0	NA	exon (NM_007166, exon 1 of 20)	exon (NM_007166, exon 1 of 20)	324	NM_001008660	8301	Hs.163893	NM_007166	ENSG00000073921	PICALM	CALM|CLTH|LAP	phosphatidylinositol binding clathrin assembly protein	protein-coding	4.524	4.583	4.365	6.221	4.227	2.463	3.965	2.698	0.379	2.611	0.784	5.074	9.769	8.423	0.209	6.411	8.266	7.588	10.616	9.790	8.144	12.042	4.359	25.313	26.420	3.519	4.776	7.484	11.282	6.521	6.254	3.373	8.241	6.335	6.116	5.635	6.694	3.471	1.679	3.449	5.402	1.311	3.641	3.965	5.074	8.879	2.980	2.170	2.872
6968	chr6	132377789	132412369	+	0	NA	Intergenic	L1ME3B|LINE|L1	41324	NR_039673	100616191		NR_039673	ENSG00000265669	MIR548AJ1	-	microRNA 548aj-1	ncRNA	0.666	0.824	0.686	0.074	0.198	0.098	0.163	0.448	0.146	0.213	0.152	0.038	0.214	9.132	0.301	0.640	0.424	0.475	0.542	0.199	0.259	nan	0.247	0.480	0.475	0.335	0.422	0.110	0.135	0.987	0.765	0.137	0.214	0.141	0.147	0.154	nan	0.369	0.362	0.013	0.055	0.011	0.053	0.163	0.038	0.011	0.062	0.040	0.032
7225	chr7	28217983	28224841	+	0	NA	promoter-TSS (NM_175061)	promoter-TSS (NM_175061)	-975	NM_175061	221895	Hs.368944	NM_175061	ENSG00000153814	JAZF1	TIP27|ZNF802	JAZF zinc finger 1	protein-coding	2.459	2.054	2.224	0.664	1.416	1.007	1.435	1.394	0.398	1.547	0.616	3.510	2.092	0.508	0.115	3.104	3.699	2.123	nan	2.739	2.013	2.476	1.277	2.789	2.249	0.172	0.379	1.253	1.686	0.880	0.675	0.370	1.066	2.131	1.777	0.775	nan	1.726	0.802	0.097	0.803	0.815	0.737	1.435	3.510	0.525	4.008	0.345	0.522
4820	chr20	4128897	4156357	+	0	NA	intron (NM_175842, intron 1 of 8)	intron (NM_175842, intron 1 of 8)	13201	NM_175841	54498	Hs.433337	NM_175839	ENSG00000088826	SMOX	C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO	spermine oxidase	protein-coding	1.166	1.265	0.867	0.179	0.555	0.357	0.559	0.324	0.108	0.222	0.102	0.117	1.311	0.269	0.062	4.539	6.166	1.205	1.479	1.051	0.920	0.457	0.141	1.070	1.201	0.382	0.694	1.402	1.809	0.827	0.622	2.231	3.367	0.112	0.149	0.437	0.773	0.609	0.500	0.700	0.424	0.028	0.040	0.559	0.117	0.383	0.372	1.424	0.121
5553	chr3	134122418	134129579	+	0	NA	Intergenic	Intergenic	-30671	NR_039951	100616281		NR_039951		MIR4788	-	microRNA 4788	ncRNA	2.134	nan	nan	1.324	2.720	1.477	1.267	0.176	0.241	0.745	0.484	9.751	2.468	0.031	0.080	2.858	4.068	0.353	0.442	17.576	19.271	2.831	0.944	0.931	0.958	1.477	2.074	3.550	3.824	nan	2.833	0.753	1.166	0.192	0.189	3.352	5.618	2.286	1.269	1.507	0.893	0.013	2.183	1.267	9.751	0.272	1.765	0.220	1.785
1762	chr12	1950993	1953180	+	0	NA	intron (NM_172364, intron 25 of 37)	intron (NM_172364, intron 25 of 37)	22653	NM_001039029	654429	Hs.585579	NM_001039029	ENSG00000166159	LRTM2	-	leucine rich repeats and transmembrane domains 2	protein-coding	1.205	nan	nan	0.160	0.439	0.292	0.737	0.093	0.093	0.153	0.110	0.218	0.693	0.067	0.092	0.120	0.319	0.218	0.214	nan	0.684	0.297	0.134	0.064	0.116	1.068	1.452	0.192	0.397	0.579	0.269	0.362	0.456	0.329	0.207	0.641	nan	0.347	0.279	0.075	0.080	0.005	0.164	0.737	0.218	5.848		0.224	0.114
260	chr1	41960807	41985496	+	0	NA	3' UTR (NM_024503, exon 9 of 9)	3' UTR (NM_024503, exon 9 of 9)	-22797	NM_001956	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding	17.903	1.258	nan	0.419	0.368	0.304	0.836	0.824	0.145	0.297	0.209	0.776	1.918	0.455	0.087	0.601	0.870	0.453	0.849	1.251	1.247	1.122	0.373	1.475	1.527	0.827	nan	nan	6.858	1.537	1.823	1.113	nan	0.311	0.347	0.503	0.911	0.941	0.585	0.689	0.178	0.050	0.094	0.836	0.776	0.715	0.136	0.441	0.279
5172	chr21	47292828	47310599	+	0	NA	intron (NM_001130141, intron 1 of 12)	L1MA8|LINE|L1	31838	NM_020528	54039	Hs.474049	NM_020528	ENSG00000183570	PCBP3	ALPHA-CP3	poly(rC) binding protein 3	protein-coding	nan	0.738	0.946	0.280	0.552	0.218	0.418	0.071	0.081	0.378	0.136	0.431	0.594	0.025	0.085	0.355	0.106	0.199	0.362	1.347	1.106	nan	0.071	0.127	0.108	0.329	nan	0.265	0.661	1.181	1.231	0.351	0.336	0.491	0.358	0.277	0.370	3.695	2.261	0.083	0.261	0.027	0.053	0.418	0.431	0.326	3.568	0.088	0.049
2061	chr12	85231537	85244268	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	68706	NM_018057	55117	Hs.44424	NM_018057	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	solute carrier family 6 member 15	protein-coding	0.790	0.836	0.922	0.104	0.252	0.145	0.170	0.213	0.113	0.123	0.183	0.132	0.265	0.042	0.119	0.333	0.239	0.201	0.229	0.651	1.027	0.414	0.197	0.234	0.254	6.904	7.081	0.422	0.403	1.602	1.296	0.118	0.228	0.464	0.425	0.234	0.369	1.001	0.769	0.018	0.069	0.076	0.086	0.170	0.132	0.138	0.031	0.171	0.029
3080	chr16	19810922	19818647	+	0	NA	intron (NR_130968, intron 7 of 8)	MER5B|DNA|hAT-Charlie	81449	NM_016235	51704	Hs.148685	NM_016235	ENSG00000167191	GPRC5B	RAIG-2|RAIG2	G protein-coupled receptor class C group 5 member B	protein-coding	0.830	1.807	nan	3.097	1.696	0.683	1.242	0.195	0.126	1.109	0.666	3.941	2.385	0.042	0.097	0.711	1.401	0.410	0.822	3.752	2.850	9.318	3.139	0.408	0.495	0.491	0.915	10.692	10.587	nan	0.259	0.273	0.389	2.669	3.093	0.359	0.736	2.997	1.316	2.091	1.124	0.467	0.223	1.242	3.941	0.130	0.263	0.128	0.209
1144	chr10	74014137	74038023	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-7597	NM_019058	54541	Hs.744875	NM_019058	ENSG00000168209	DDIT4	Dig2|REDD-1|REDD1	DNA damage inducible transcript 4	protein-coding	2.230	nan	1.960	1.531	5.550	2.777	1.312	1.458	0.215	1.307	0.852	3.377	5.161	1.753	0.112	1.222	2.828	2.717	3.961	4.309	3.882	4.262	1.746	2.200	2.366	0.818	1.144	3.858	nan	1.956	2.897	1.367	2.825	2.144	1.746	1.422	nan	1.590	0.724	1.548	3.292	0.716	1.424	1.312	3.377	0.496	0.839	1.700	1.839
1723	chr11	126867903	126875456	+	0	NA	promoter-TSS (NM_001161707)	promoter-TSS (NM_001161707)	-913	NM_001301097	84623	Hs.376015	NM_032531	ENSG00000149571	KIRREL3	KIRRE|MRD4|NEPH2|PRO4502	kin of IRRE like 3 (Drosophila)	protein-coding	0.674	2.931	0.863	1.156	2.293	1.101	3.664	0.019	0.021	0.578	0.284	1.569	12.128	0.086	0.100	0.744	0.585	0.416	0.472	3.655	3.656	4.904	1.054	0.116	0.110	0.157	0.291	1.645	2.106	1.213	1.355	0.918	1.426	4.218	2.614	0.322	nan	2.373	1.213	0.437	1.101	1.392	0.264	3.664	1.569	0.139	0.041	0.118	0.387
6750	chr6	37632740	37683747	+	0	NA	intron (NM_153487, intron 1 of 16)	intron (NM_153487, intron 1 of 16)	7523	NM_153487	266727	Hs.437993	NM_153487	ENSG00000112139	MDGA1	GPIM|MAMDC3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	nan	0.929	nan	0.286	1.093	0.657	1.230	0.243	0.092	0.181	0.119	2.282	2.344	0.440	0.110	0.453	0.621	0.265	nan	nan	2.171	0.881	0.235	0.410	0.448	2.071	2.419	0.909	1.344	1.420	1.236	0.394	0.525	0.536	0.628	0.930	2.505	1.303	0.790	1.666	1.413	0.160	0.674	1.230	2.282	0.583	0.060	0.156	0.697
2047	chr12	81169648	81175776	+	0	NA	Intergenic	Intergenic	15779	NR_120469	101928420	Hs.739989	NR_120468	ENSG00000257741	LINC01490	-	long intergenic non-protein coding RNA 1490	ncRNA	1.796	2.300	0.989	2.787	2.043	0.956	2.499	1.624	0.237	0.771	0.579	1.013	4.070		0.058	0.359	0.383	1.773	3.536	2.758	2.887	10.148	2.023	0.897	1.198	3.607	4.171	6.097	4.309	1.371	0.657	0.299	0.314	9.473	14.073	0.583	1.068	1.557	1.094	2.149	0.838	2.038	1.021	2.499	1.013	0.689	2.665	0.113	0.182
144	chr1	25056866	25077249	+	0	NA	Intergenic	AluSq2|SINE|Alu	-4703	NM_013943	25932	Hs.440544	NM_013943	ENSG00000169504	CLIC4	CLIC4L|H1|MTCLIC|huH1|p64H1	chloride intracellular channel 4	protein-coding	2.290	1.586	nan	1.537	1.496	0.850	1.337	1.121	0.520	1.255	0.689	0.536	3.213	1.098	0.130	0.996	1.180	1.319	1.958	3.279	2.558	1.772	0.539	1.989	2.055	1.847	2.353	1.848	2.974	1.017	1.040	0.700	1.420	1.267	1.048	3.129	6.127	1.720	0.844	1.412	1.846	0.341	1.090	1.337	0.536	0.379	1.119	0.407	2.969
3696	chr18	24256341	24283767	+	0	NA	intron (NR_024259, intron 1 of 1)	intron (NR_024259, intron 1 of 1)	13548	NR_024259	728606	Hs.170599	NR_024259	ENSG00000265369	PCAT18	LINC01092	prostate cancer associated transcript 18 (non-protein coding)	ncRNA	0.706	0.895	0.753	0.128	0.216	0.085	1.047	0.070	0.083	0.108	0.122	0.083	0.440	0.028	0.079	1.576	1.827	2.652	nan	0.352	0.571	0.254	0.178	5.587	5.586	0.080	0.161	0.257	0.235	0.317	0.125	2.142	3.431	0.132	0.144	0.289	0.608	0.983	1.048	0.016	0.026	0.007	0.078	1.047	0.083	0.021	0.055	2.687	0.054
5787	chr3	193520505	193551393	+	0	NA	Intergenic	Intergenic	176078	NR_027764	100128023	Hs.730112	NR_027764		DPPA2P3	-	developmental pluripotency associated 2 pseudogene 3	pseudo	nan	4.056	0.896	1.899	2.069	1.111	0.490	0.255	0.216	0.298	0.283	0.539	nan	0.049	0.090	1.277	1.462	0.617	1.407	1.458	1.105	5.358	1.815	0.443	0.474	0.887	1.280	1.995	1.977	0.893	0.832	0.491	0.613	1.399	1.442	0.350	0.522	2.587	1.408	5.446	0.668	0.154	1.307	0.490	0.539	0.358	0.804	0.203	0.505
906	chr1	228673075	228681003	+	0	NA	intron (NM_001010858, intron 2 of 3)	AluJr|SINE|Alu	1971	NM_001010858	149603	Hs.356377	NM_001010858	ENSG00000168159	RNF187	RACO-1|RACO1	ring finger protein 187	protein-coding	2.823	nan	8.979	12.725	17.502	9.836	4.252	1.973	0.461	7.007	2.594	7.428	20.310	4.183	0.166	8.350	11.937	5.578	7.536	13.255	nan	9.305	5.374	17.455	18.676	2.184	2.959	11.415	8.289	3.194	4.811	5.442	6.417	6.145	7.234	3.776	8.000	3.895	1.869	10.681	7.593	0.962	3.262	4.252	7.428	1.087	3.425	1.437	1.340
1349	chr11	23604900	23624713	+	0	NA	Intergenic	Intergenic	-174070	NR_107021	102465860		NR_107021	ENSG00000275868	MIR8054	hsa-mir-8054	microRNA 8054	ncRNA	0.483	0.859	0.565	0.089	0.168	0.073	0.034	0.060	0.073	0.073	0.086	0.054	0.364	0.033	0.077	0.394	0.329	0.253	0.230	0.248	0.317	0.106	0.078	0.158	0.210	2.745	3.133	0.245	0.239	0.235	0.059	0.144	0.273	0.168	0.258	0.169	0.270	0.420	0.472	0.293	0.112	0.024		0.034	0.054	0.005	0.026	0.045	0.056
177	chr1	30266020	30280580	+	0	NA	Intergenic	Intergenic	237159	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA	0.670	nan	0.529	0.374	2.598	1.575	0.391	0.075	0.067	0.129	0.156	4.704	1.088	0.067	0.087	0.327	0.383	0.093	0.183	2.403	3.495	nan	0.062	0.134	0.124	0.168	0.346	0.706	0.807	nan	0.350	0.464	0.466	0.132	0.146	0.432	1.132	0.708	nan	0.355	0.402	0.020	0.017	0.391	4.704	0.113	0.175	0.122	0.166
7969	chr8	142230372	142256700	+	0	NA	intron (NM_001286646, intron 1 of 7)	AluSz6|SINE|Alu	-4863	NM_001286648	57210	Hs.372492	NM_001080431	ENSG00000022567	SLC45A4	-	solute carrier family 45 member 4	protein-coding	1.375	1.112	nan	1.164	1.323	0.677	0.508	0.119	0.055	0.233	0.122	2.023	2.042	0.058	0.064	0.631	0.956	0.359	0.532	nan	2.406	nan	0.736	1.192	1.264	0.282	0.504	5.173	7.766	0.522	0.491	1.134	1.420	0.557	0.470	0.392	0.435	1.133	0.783	5.035	2.737	0.028	0.449	0.508	2.023	0.233	0.803	0.551	0.170
2213	chr12	132194700	132196738	+	0	NA	promoter-TSS (NM_001261411)	promoter-TSS (NM_001261411)	87	NM_001261411	6433	Hs.308171	NM_004592	ENSG00000061936	SFSWAP	SFRS8|SWAP	splicing factor SWAP homolog	protein-coding	6.337	4.456	4.686	5.425	6.736	3.775	7.656	3.129	0.313	3.769	2.544	7.967	11.281	5.714	0.156	11.178	8.784	10.489	15.602	11.103	13.765	12.178	9.127	15.775	15.655	5.799	7.770	10.378	13.740	13.967	12.162	15.068	17.662	7.020	10.136	10.417	6.930	7.261	4.109	3.831	6.324	1.268	2.004	7.656	7.967	2.755	3.552	2.761	1.947
8035	chr9	7283152	7291745	+	0	NA	Intergenic	Intergenic	512358	NM_001318058	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding	0.609	1.697	0.674	0.206	0.268	0.244	0.606	0.057	0.038	0.567	0.292	0.195	0.712	0.025	0.102	0.146	0.125	0.187	0.253	0.471	0.877	8.557	2.336	0.091	0.082	0.257	0.537	0.509	0.453	0.387	0.153	0.184	0.169	1.661	0.906	0.325	nan	4.349	1.944	6.979	0.371	0.267	0.110	0.606	0.195	0.023	0.201	0.058	0.044
3346	chr17	27907473	27931760	+	0	NA	promoter-TSS (NM_152345)	promoter-TSS (NM_152345)	-911	NM_152345	124930	Hs.662164	NM_152345	ENSG00000198720	ANKRD13B	-	ankyrin repeat domain 13B	protein-coding	nan	nan	nan	0.502	2.856	1.437	2.249	0.571	0.124	0.467	0.306	1.488	3.812	2.650	0.153	2.863	3.983	1.340	2.098	2.190	1.899	2.812	0.876	2.231	2.224	1.828	2.670	2.933	4.045	3.912	4.504	1.775	3.688	1.699	1.276	2.119	nan	1.199	0.760	2.151	1.031	0.472	0.707	2.249	1.488	1.606	1.092	1.777	1.855
2940	chr15	70982317	71015019	+	0	NA	intron (NM_018003, intron 1 of 18)	L1M3|LINE|L1	-4048	NM_001008224	55075	Hs.108049	NM_018003	ENSG00000137831	UACA	NUCLING	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.712	0.826	0.720	0.132	0.287	0.132	0.203	1.282	0.172	0.084	0.132	0.134	0.347	4.497	0.150	0.312	0.234	0.789	1.093	0.228	0.336	0.452	0.150	0.167	0.167	0.230	0.299	0.283	0.285	0.540	0.196	0.185	0.275	0.031	0.068	0.173	0.304	0.394	0.321	0.024	0.057	0.006	0.056	0.203	0.134	0.056	0.025	0.030	0.060
3072	chr16	19077206	19081955	+	0	NA	promoter-TSS (NR_119382)	promoter-TSS (NR_119382)	341	NM_001190983	10229	Hs.157113	NM_016138	ENSG00000167186	COQ7	CAT5|CLK-1|CLK1|COQ10D8	coenzyme Q7, hydroxylase	protein-coding	3.464	2.743	nan	4.446	3.790	2.096	2.358	0.965	0.177	1.635	0.568	2.834	7.583	1.432	0.137	2.463	2.924	2.054	3.377	4.307	3.254	8.900	7.167	9.559	9.965	2.449	3.055	14.177	17.936	nan	3.570	2.656	2.993	6.937	5.828	3.854	3.275	3.441	1.893	1.995	1.841	0.642	1.342	2.358	2.834	1.049	0.980	1.180	1.375
4345	chr2	51179127	51194489	+	0	NA	intron (NM_001330081, intron 2 of 5)	L1MB7|LINE|L1	72866	NM_001330085	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding	0.948	nan	1.074	0.218	1.277	0.573	0.245	0.122	0.083	0.915	0.510	0.576	0.701	0.048	0.115	0.357	0.234	0.187	0.523	0.573	0.728	1.225	0.326	0.307	0.345	2.500	3.362	1.164	1.219	0.667	0.322	0.130	0.172	1.374	2.378	0.329	0.727	0.653	0.380	0.136	0.818	0.621	0.052	0.245	0.576	0.120	0.152	0.038	0.202
6601	chr6	7049745	7053829	+	0	NA	Intergenic	CpG	-56043	NM_001168344	6239	Hs.298248	NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding	3.292	2.418	2.988	3.006	1.833	0.901	0.898	0.129	0.096	0.884	0.379	9.713	1.490	0.424	0.176	0.599	1.274	0.284	0.463	1.934	1.568	6.755	1.959	5.235	5.620	0.292	0.488	6.880	9.006	1.292	1.546	0.466	0.792	1.697	1.134	1.385	2.148	1.355	1.118	0.423	0.325	0.282	4.018	0.898	9.713	0.569	1.081	0.144	0.880
3213	chr16	87833075	87846890	+	0	NA	Intergenic	Intergenic	-27228	NR_120309	102724467	Hs.587857	NR_120309		LOC102724467	-	uncharacterized LOC102724467	ncRNA	nan	1.828	1.210	3.218	6.872	3.879	2.250	0.514	0.104	1.844	0.892	5.027	3.655	0.252	0.081	1.422	2.720	0.483	1.263	2.931	2.681	5.128	2.221	2.412	2.627	0.141	0.303	2.347	2.387	0.791	0.742	2.758	2.705	1.920	1.785	0.664	3.272	2.802	1.566	1.511	2.890	0.399	1.206	2.250	5.027	0.790	1.304	1.428	0.525
7316	chr7	70076172	70098421	+	0	NA	intron (NM_015570, intron 5 of 18)	intron (NM_015570, intron 5 of 18)	-510227	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding	nan	1.534	0.858	0.044	1.059	0.498	3.014	0.444	0.145	0.626	0.377	0.320	1.412	0.049	0.114	0.481	0.350	0.263	nan	2.198	2.075	3.522	0.684	0.120	0.139	0.970	nan	0.195	nan	2.397	2.944	0.213	0.310	2.457	3.498	0.291	0.674	1.246	0.882	0.090	1.144	1.001	1.415	3.014	0.320	0.955	0.050	0.044	0.084
7774	chr8	83956743	83964098	+	0	NA	Intergenic	Intergenic	136081	NR_134295	101927141	Hs.128557	NR_134295	ENSG00000254394	LOC101927141	-	uncharacterized LOC101927141	ncRNA	1.045	nan	nan	0.275	3.033	1.415	0.087	0.181	0.153	0.575	0.203	0.406	0.222	0.015	0.089	0.330	0.204	0.186	0.130	0.577	0.565	5.646	4.223	0.286	0.242	0.741	0.813	nan	4.505	0.469	0.153	0.226	0.189	1.079	1.135	0.251	0.543	7.400	3.362	0.030	0.108	0.181	0.074	0.087	0.406		2.070	0.027	0.033
493	chr1	145089868	145118532	+	0	NA	intron (NM_004892, intron 2 of 5)	intron (NM_004892, intron 2 of 5)	7793	NM_004892	9554	Hs.632438	NM_004892	ENSG00000265808	SEC22B	ERS-24|SEC22L1	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)	protein-coding	4.094	nan	3.340	0.668	1.069	0.543	1.071	3.666	0.508	0.514	0.461	0.601	2.546	0.405	0.426	1.390	1.204	1.416	2.015	1.958	2.258	1.916	0.598	2.034	2.149	1.419	2.137	1.620	1.852	2.455	1.555	1.532	2.122	1.543	2.019	3.305	7.546	1.734	1.392	0.559	0.726	0.397	0.425	1.071	0.601	0.090	0.376	0.570	1.866
4795	chr2	242354495	242361637	+	0	NA	intron (NM_014808, intron 8 of 26)	MER112|DNA|hAT-Charlie	-59254	NR_036083	100422942		NR_036083	ENSG00000263752	MIR3133	-	microRNA 3133	ncRNA	1.035	nan	1.316	1.256	0.743	0.473	0.124	0.043	0.181	0.308	0.270	7.233	0.523	0.091	0.112	0.934	1.578	0.360	0.485	1.269	2.038	2.388	0.560	0.708	0.619	0.405	0.651	3.054	3.554	0.346	0.164	1.078	1.755	0.247	0.435	0.234	0.548	0.568	0.513	0.612	0.161	0.080	0.011	0.124	7.233	0.068	0.528	0.501	0.086
1436	chr11	61270066	61284843	+	0	NA	3' UTR (NM_001145077, exon 1 of 1)	3' UTR (NM_001145077, exon 1 of 1)	1182	NM_001145077	390205	Hs.441122	NM_001145077	ENSG00000204950	LRRC10B	-	leucine rich repeat containing 10B	protein-coding	nan	1.556	3.901	1.601	0.566	0.325	0.460	0.111	0.108	0.290	0.128	0.402	2.284	0.161	0.096	4.200	6.227	0.521	0.799	2.517	2.294	2.371	0.741	1.227	1.197	0.469	0.888	5.668	6.583	0.788	0.591	2.807	3.504	0.771	0.740	0.618	0.763	0.893	0.643	0.879	1.090	0.088	1.582	0.460	0.402	0.634	1.142	2.012	0.121
3719	chr18	31315472	31345837	+	0	NA	3' UTR (NM_030632, exon 12 of 12)	3' UTR (NM_030632, exon 12 of 12)	172113	NM_030632	80816	Hs.464876	NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	additional sex combs like 3, transcriptional regulator	protein-coding	nan	0.893	0.777	1.210	3.300	1.747	0.497	0.049	0.032	0.452	0.495	5.521	1.357	0.050	0.083	0.429	0.246	0.369	0.382	19.959	20.902	1.356	0.427	0.156	0.126	1.246	1.550	nan	3.410	0.848	0.670	0.081	0.141	1.028	1.919	0.377	0.774	9.689	5.047	1.568	3.170	0.253	0.174	0.497	5.521	0.305	0.197	0.030	0.134
4699	chr2	211705957	211728484	+	0	NA	Intergenic	Intergenic	234925	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA	nan	0.961	nan	0.158	1.062	0.521	0.416	0.096	0.050	0.494	0.299	0.426	0.273	0.014	0.085	0.401	0.252	0.166	0.204	0.331	0.397	4.295	2.647	0.440	0.340	0.176	0.233	0.648	nan	0.751	0.468	0.123	0.234	0.520	0.392	0.539	0.999	0.871	0.517	0.025	0.103	0.037	0.085	0.416	0.426	0.060	0.050	0.048	0.339
5506	chr3	121280263	121294557	+	0	NA	intron (NM_001012659, intron 1 of 4)	intron (NM_001012659, intron 1 of 4)	632	NM_001012659	503582	Hs.224976	NM_001012659	ENSG00000186103	ARGFX	-	arginine-fifty homeobox	protein-coding	1.491	nan	1.041	0.203	0.499	0.224	0.100	0.173	0.180	0.160	0.235	0.140	0.205	0.045	0.106	0.393	0.188	0.243	0.337	0.373	0.373	1.148	0.266	0.320	0.322	2.245	nan	0.329	0.433	2.571	1.855	0.233	0.309	0.073	0.128	1.922	6.185	0.623	0.493	0.035	0.137	0.047	0.177	0.100	0.140	0.055	0.029	0.070	3.497
6543	chr5	169573066	169592841	+	0	NA	Intergenic	Intergenic	43192	NR_108022	100507267	Hs.634846	NR_108022		LINC01187	CTB-27N1.1|KIDR	long intergenic non-protein coding RNA 1187	ncRNA	nan	0.702	0.566	0.044	0.127	0.065	0.071	0.163	0.033	0.008	0.074	0.054	0.401	0.121	0.088	0.403	0.339	12.986	10.383	0.199	0.268	0.110	0.054	0.952	0.949	0.126	0.227	0.285	0.437	0.634	0.539	0.186	0.637	0.108	0.152	0.131	0.188	0.508	0.368	0.026	0.094	0.009	0.016	0.071	0.054	0.078	0.030	0.140	0.122
4493	chr2	131095913	131115341	+	0	NA	TTS (NM_001320304)	TTS (NM_001320304)	-5373	NR_104471	84317	Hs.104203	NM_032357	ENSG00000136710	CCDC115	CDG2O|ccp1	coiled-coil domain containing 115	protein-coding	nan	0.882	nan	0.972	1.053	0.608	0.790	0.500	0.141	0.398	0.312	1.049	3.218	0.737	0.091	8.599	11.588	7.120	5.560	1.319	1.108	2.837	1.038	10.869	11.441	0.976	1.611	2.033	nan	1.476	1.605	9.905	15.388	0.585	0.611	0.993	1.363	0.808	0.504	0.640	0.842	0.128	0.319	0.790	1.049	0.431	0.693	10.230	0.403
2752	chr14	96111061	96138414	+	0	NA	intron (NR_028288, intron 3 of 7)	AluJo|SINE|Alu	7222	NR_028288	27004	Hs.510368	NM_012468	ENSG00000187621	TCL6	TNG1|TNG2	T-cell leukemia/lymphoma 6 (non-protein coding)	ncRNA	0.776	0.737	nan	0.539	0.288	0.245	0.519	0.165	0.106	0.269	0.192	0.214	1.918	0.048	0.107	0.926	1.394	0.100	0.149	0.758	0.815	2.241	0.362	8.358	8.748	0.282	0.514	1.287	2.065	0.609	0.416	1.575	2.241	0.794	0.768	0.166	0.293	nan	0.785	0.809	0.318	0.175	0.029	0.519	0.214	0.050	0.056	2.166	0.040
5750	chr3	184454673	184483792	+	0	NA	Intergenic	Intergenic	21711	NR_110043	101928992	Hs.507129	NR_110043	ENSG00000229433	LINC02069	-	long intergenic non-protein coding RNA 2069	ncRNA	1.147	0.901	0.734	0.318	0.566	0.270	0.492	0.175	0.132	0.194	0.183	0.162	0.578	0.067	0.071	2.444	3.641	2.207	0.818	0.485	0.558	0.663	0.198	3.589	3.887	0.278	0.557	1.415	1.484	0.717	0.395	2.869	5.046	0.176	0.207	0.446	0.716	0.731	0.574	0.029	0.091	0.010	0.143	0.492	0.162	0.190	0.313	4.622	0.247
6913	chr6	113905496	113921819	+	0	NA	Intergenic	Arthur1C|DNA|hAT-Tip100	57620	NR_125844	101927686	Hs.402044	NR_125844	ENSG00000230943	LOC101927686	-	uncharacterized LOC101927686	ncRNA	nan	1.630	nan	1.340	4.291	2.571	1.613	0.899	0.236	0.157	0.110	1.175	1.424	0.259	0.127	0.480	0.437	0.449	1.285	2.907	nan	nan	1.242	0.239	0.246	1.144	nan	0.693	0.586	0.532	0.322	0.191	0.417	0.789	0.662	0.309	nan	0.637	0.509	0.328	0.229	0.181	0.576	1.613	1.175	0.264	0.224	0.428	0.122
1993	chr12	64293523	64314198	+	0	NA	intron (NM_020762, intron 1 of 21)	MLT2C1|LTR|ERVL	65327	NM_020762	57522	Hs.210751	NM_020762	ENSG00000196935	SRGAP1	ARHGAP13|NMTC2	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.931	0.925	0.778	0.234	3.045	1.623	0.380	0.629	0.171	0.871	0.689	0.534	0.858	1.559	0.110	0.599	0.877	1.321	4.132	0.425	nan	1.213	0.613	0.441	0.571	1.587	1.847	1.444	1.396	0.671	0.393	0.394	0.577	2.464	3.195	0.168	0.407	1.034	0.774	0.219	0.319	0.595	0.457	0.380	0.534	0.070	0.631	0.655	0.185
1499	chr11	70660218	70693485	+	0	NA	intron (NM_012309, intron 8 of 22)	intron (NM_012309, intron 8 of 22)	-32044	NR_073536	220070	Hs.326766	NM_145308	ENSG00000171671	SHANK2-AS3	C11orf76	SHANK2 antisense RNA 3	ncRNA	nan	0.605	0.741	0.056	0.573	0.322	0.676	0.052	0.077	0.425	0.276	2.484	1.226	0.070	0.098	1.701	1.977	0.141	0.247	2.157	2.338	1.786	0.608	0.657	0.635	0.730	1.102	1.331	1.508	0.287	0.181	0.531	0.557	0.846	0.606	0.162	0.158	1.457	0.837	3.016	2.061	0.126	0.041	0.676	2.484	0.212	0.049	0.169	0.063
919	chr1	232145608	232152620	+	0	NA	intron (NM_001164537, intron 12 of 13)	intron (NM_001164537, intron 12 of 13)	87534	NR_126441	104472714		NR_126441	ENSG00000226758	DISC1-IT1	-	DISC1 intronic transcript 1	ncRNA	1.237	2.014	1.849	1.317	1.002	0.646	0.725	0.182	0.088	1.653	0.539	0.409	1.354	0.062	0.111	0.314	0.323	1.142	1.192	1.432	1.187	10.065	2.429	0.306	0.329	0.596	0.847	nan	1.557	0.466	0.228	0.196	0.144	1.235	1.329	0.488	1.065	nan	1.504	1.732	0.482	0.327	0.225	0.725	0.409	0.097	1.951	0.056	0.265
400	chr1	90454292	90465977	+	0	NA	promoter-TSS (NM_182975)	promoter-TSS (NM_182975)	391	NR_002830	492303	Hs.550796	NR_002830		GEMIN8P4	-	gem nuclear organelle associated protein 8 pseudogene 4	pseudo	nan	nan	4.299	1.726	1.630	0.918	1.383	0.934	0.235	0.617	0.312	1.692	3.332	1.261	0.138	2.292	2.232	3.225	4.346	4.054	nan	3.420	1.603	4.496	4.684	3.276	nan	4.534	6.333	nan	5.647	1.426	2.714	2.287	2.616	3.346	8.327	1.859	1.081	1.260	1.508	0.562	1.576	1.383	1.692	0.819	0.852	0.567	2.679
7984	chr8	143412970	143442095	+	0	NA	intron (NM_145003, intron 2 of 13)	intron (NM_145003, intron 2 of 13)	57078	NM_001291931	203062	Hs.370931	NM_145003	ENSG00000171045	TSNARE1	-	t-SNARE domain containing 1	protein-coding	1.332	0.870	nan	0.659	0.555	0.276	0.218	0.057	0.056	0.237	0.151	2.374	1.563	0.022	0.056	0.744	1.338	0.209	0.260	nan	4.963	nan	0.184	0.517	0.438	0.459	0.712	2.281	2.791	1.020	1.490	0.376	0.478	0.351	0.312	0.200	0.344	1.240	0.747	5.205	1.024	0.075	0.169	0.218	2.374	0.349	0.665	0.047	0.086
633	chr1	163939560	163954143	+	0	NA	Intergenic	L2|LINE|L2	-553870	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3 subunit J pseudogene	pseudo	0.899	nan	1.186	3.147	1.377	0.560	0.369	0.112	0.066	0.573	0.238	1.424	1.195	0.059	0.084	0.914	0.601	3.690	1.083	0.577	nan	5.303	1.831	0.226	0.200	0.584	0.806	2.319	nan	0.470	0.204	0.525	0.608	1.114	2.157	0.420	1.045	2.182	1.056	0.123	0.347	0.254	0.870	0.369	1.424	0.026	0.487	0.105	0.132
5963	chr4	87973739	87997040	+	0	NA	intron (NM_001313959, intron 3 of 19)	intron (NM_001313959, intron 3 of 19)	57236	NM_005935	4299	Hs.480190	NM_005935	ENSG00000172493	AFF1	AF4|MLLT2|PBM1	AF4/FMR2 family member 1	protein-coding	1.541	0.931	1.218	1.072	2.116	1.029	0.694	0.313	0.096	0.601	0.375	0.858	2.430	0.061	0.057	0.756	1.139	0.760	1.344	2.491	2.318	0.175	0.101	0.311	0.286	1.798	nan	2.570	3.213	2.586	2.306	0.642	1.081	1.241	1.536	1.493	nan	1.028	0.675	1.212	2.548	0.352	0.105	0.694	0.858	0.355	1.205	0.707	2.237
1372	chr11	33179201	33184991	+	0	NA	intron (NM_001033506, intron 1 of 1)	intron (NM_001033506, intron 1 of 1)	941	NM_001033505	1479	Hs.44402	NM_001326	ENSG00000176102	CSTF3	CSTF-77	cleavage stimulation factor subunit 3	protein-coding	3.570	3.391	nan	3.443	4.090	1.992	2.546	1.375	0.247	2.435	1.328	2.771	7.356	4.863	0.299	6.941	5.950	6.298	8.425	6.681	5.565	7.994	4.245	12.984	12.922	7.712	8.619	4.584	8.562	6.712	5.848	5.476	7.838	5.990	7.878	4.889	nan	3.781	2.004	3.586	2.337	0.803	1.522	2.546	2.771	1.716	1.647	3.849	1.962
7551	chr7	153626687	153642603	+	0	NA	intron (NM_001039350, intron 1 of 25)	AluSx1|SINE|Alu	50463	NM_001039350	1804	Hs.490684	NM_001936	ENSG00000130226	DPP6	DPL1|DPPX|MRD33|VF2	dipeptidyl peptidase like 6	protein-coding	0.485	0.660	nan	0.028	0.597	0.386	1.836	0.075	0.060	1.130	0.383	0.240	1.837	0.021	0.137	1.505	1.483	0.154	0.304	2.370	1.759	5.406	1.715	0.058	0.038	0.117	0.226	0.089	0.087	0.422	0.230	0.149	0.163	0.588	0.758	0.140	0.161	0.706	0.676	0.014	0.032	0.161	0.020	1.836	0.240	0.024	0.032	0.006	0.046
5468	chr3	112921625	112941693	+	0	NA	intron (NM_001301861, intron 1 of 19)	intron (NM_001301861, intron 1 of 19)	315	NM_001301861	91653	Hs.591318	NM_033254	ENSG00000144857	BOC	CDON2	BOC cell adhesion associated, oncogene regulated	protein-coding	1.981	nan	1.226	0.442	0.593	0.280	1.208	0.920	0.201	0.151	0.212	0.951	1.699	0.087	0.081	0.876	1.678	1.915	3.434	0.895	nan	0.496	0.165	0.295	0.420	nan	5.137	0.491	0.562	0.755	0.630	0.126	0.251	0.660	0.591	0.298	0.598	0.440	0.493	0.119	0.058	0.299	0.779	1.208	0.951	0.356	0.046	0.040	0.156
3309	chr17	17638849	17696852	+	0	NA	intron (NR_130894, intron 1 of 1)	AluSz6|SINE|Alu	1766	NR_130894	100861516	Hs.624874	NR_130894	ENSG00000237328	RAI1-AS1	-	RAI1 antisense RNA 1	ncRNA	2.164	1.034	1.893	0.983	2.625	1.496	1.559	0.310	0.077	0.686	0.339	2.046	1.921	0.358	0.039	2.335	4.028	0.488	nan	3.760	3.703	1.598	0.497	0.630	0.576	1.080	1.569	4.505	5.267	nan	5.489	0.568	0.829	0.683	0.828	2.302	3.818	1.486	0.743	0.943	1.619	0.270	1.102	1.559	2.046	0.799	2.391	0.348	2.715
3594	chr17	77803160	77827163	+	0	NA	Intergenic	CpG	-1948	NM_003655	8535	Hs.405046	NM_003655	ENSG00000141582	CBX4	NBP16|PC2	chromobox 4	protein-coding	1.924	1.987	2.109	1.671	2.659	1.256	1.491	1.042	0.316	0.668	0.386	0.911	3.840	1.854	0.131	1.370	2.092	1.541	2.496	1.926	1.716	1.972	0.545	1.925	1.808	nan	1.271	2.190	2.497	1.463	1.091	1.360	1.656	0.536	0.725	0.554	1.395	nan	0.478	2.270	2.543	0.080	0.530	1.491	0.911	0.529	1.608	0.649	0.210
1549	chr11	81559397	81569328	+	0	NA	Intergenic	L1MEc|LINE|L1	37516	NR_036186	100422823		NR_036186	ENSG00000264110	MIR4300	-	microRNA 4300	ncRNA	0.689	0.659	0.675	0.027	0.176	0.114	0.283	0.080	0.064	0.047	0.165	0.036	0.321	0.032	0.106	0.470	0.324	0.193	0.173	0.174	0.239	0.198	0.073	0.587	0.450	1.941	1.674	0.304	0.371	0.409	0.127	0.159	0.142	6.575	5.456	0.124	0.313	0.460	0.508	0.022	0.081	2.074	0.096	0.283	0.036		0.071	0.090	0.074
6336	chr5	74343406	74350883	+	0	NA	intron (NR_126375, intron 1 of 1)	intron (NR_126375, intron 1 of 1)	1324	NR_126375	104326191	Hs.582288	NR_126375	ENSG00000250889	LINC01336	-	long intergenic non-protein coding RNA 1336	ncRNA	0.813	nan	0.685	0.224	0.823	0.366	0.273	2.570	0.174	0.126	0.110	0.128	0.881	3.123	0.155	0.400	0.194	11.583	4.783	0.555	0.506	nan	0.139	0.242	0.219	0.219	nan	0.217	0.394	0.685	0.518	0.202	0.089	0.136	0.105	0.274	0.519	0.341	0.339	0.022	0.143	0.025	0.062	0.273	0.128	0.065	0.014	0.041	0.084
1208	chr10	106199693	106206238	+	0	NA	intron (NM_001008723, intron 15 of 17)	intron (NM_001008723, intron 15 of 17)	37068	NR_120624	101927523	Hs.407539	NR_120624	ENSG00000225768	LOC101927523	-	uncharacterized LOC101927523	ncRNA	nan	nan	0.623	0.045	0.277	0.112	0.020	0.114	0.024	0.048	0.025	0.110	0.188	0.050	0.083	1.330	1.509	7.307	8.097	0.200	0.133	0.205	0.074	0.419	0.285	0.468	nan	0.161	0.251	0.145	0.082	0.704	1.051	0.032	0.062	0.297	nan	0.257	0.306	0.009	0.035	0.044	0.012	0.020	0.110	0.015	0.031	1.272	0.220
1803	chr12	7032606	7041199	+	0	NA	promoter-TSS (NM_001940)	promoter-TSS (NM_001940)	-578	NM_001940	1822	Hs.143766	NM_001940	ENSG00000111676	ATN1	B37|D12S755E|DRPLA|HRS|NOD	atrophin 1	protein-coding	3.977	nan	nan	3.123	3.562	1.963	5.565	1.072	0.151	1.720	1.064	3.774	5.731	5.448	0.209	2.019	3.603	3.202	4.078	nan	10.885	5.042	1.954	5.704	5.739	4.382	5.874	2.227	2.837	2.631	2.423	2.258	4.290	2.586	2.158	2.261	nan	1.472	0.720	4.314	1.968	0.842	4.440	5.565	3.774	6.295	1.084	1.661	1.805
5533	chr3	128199824	128217340	+	0	NA	intron (NR_125398, intron 1 of 2)	CpG-18893	536	NR_125398	101927167	Hs.287582	NR_125398		GATA2-AS1	-	GATA2 antisense RNA 1	ncRNA	2.973	nan	1.756	0.838	0.812	0.314	0.827	1.486	0.260	0.744	0.302	1.401	1.104	0.990	0.064	2.412	2.220	3.141	4.119	2.074	1.426	3.790	1.093	1.044	1.123	1.689	nan	1.172	2.038	1.499	1.083	3.971	8.553	1.163	1.072	0.336	0.476	1.022	0.678	1.139	0.609	0.218	1.874	0.827	1.401	1.069	1.242	3.080	0.057
1201	chr10	104168082	104183017	+	0	NA	intron (NM_002779, intron 3 of 16)	intron (NM_002779, intron 3 of 16)	3352	NM_002779	5662	Hs.154658	NM_002779	ENSG00000059915	PSD	EFA6|EFA6A|PSD1|TYL	pleckstrin and Sec7 domain containing	protein-coding	nan	nan	1.410	1.966	3.409	1.767	1.720	0.281	0.108	1.300	0.615	3.655	4.464	0.701	0.079	3.098	4.199	0.911	1.303	6.371	5.209	5.037	2.247	0.794	0.753	1.414	nan	5.699	7.574	1.912	2.173	1.112	1.815	2.071	1.671	2.778	nan	1.569	0.951	1.569	2.347	0.627	1.310	1.720	3.655	0.786	1.859	1.055	1.734
5492	chr3	116488545	116516804	+	0	NA	Intergenic	Intergenic	66540	NR_039649	100616485		NR_039649	ENSG00000265433	MIR4447	-	microRNA 4447	ncRNA	0.864	nan	0.747	0.109	0.362	0.170	0.086	0.079	0.119	0.078	0.112	0.038	0.186	3.065	0.078	0.315	0.185	0.161	0.228	0.307	nan	0.209	0.139	0.206	0.177	nan	1.039	0.212	0.218	1.005	0.661	0.076	0.150	0.031	0.061	0.557	1.715	0.576	0.556	0.056	0.101	0.007	0.095	0.086	0.038	0.045	0.075	0.021	0.462
3300	chr17	17182381	17186318	+	0	NA	promoter-TSS (NM_001199125)	promoter-TSS (NM_001199125)	268	NM_001316358	8533	Hs.6076	NM_003653	ENSG00000141030	COPS3	CSN3|SGN3	COP9 signalosome subunit 3	protein-coding	6.502	3.442	4.049	4.345	7.658	3.744	5.710	1.844	0.486	1.756	0.946	6.056	7.627	2.587	0.109	5.357	5.708	7.504	nan	11.253	10.262	9.303	5.606	6.917	7.994	4.931	5.637	8.863	12.645	nan	8.361	3.460	5.768	4.521	5.203	9.502	7.524	2.925	1.648	3.132	3.295	1.033	2.577	5.710	6.056	1.950	8.750	1.307	1.896
5069	chr21	20975971	20981161	+	0	NA	Intergenic	MER57A-int|LTR|ERV1	-846436	NR_109925	101927797	Hs.551743	NR_109925		MIR548XHG	-	MIR548X host gene	ncRNA	0.856	0.766	0.668	0.002	0.134	0.062	0.150			2.111	1.580	0.046	0.457	0.041	0.123	0.400	0.365	1.402	1.309	0.328	0.402	0.438	0.261	0.088	0.126	8.602	8.537	0.186	0.193	0.733	0.325	0.123	0.166	10.612	8.223	0.300	nan	5.654	2.385	0.011	0.036	2.148	0.061	0.150	0.046		0.020	0.095	
17	chr1	1385959	1410770	+	0	NA	intron (NM_001039211, intron 11 of 11)	intron (NM_001039211, intron 11 of 11)	-8771	NM_031921	83858	Hs.729021	NM_031921	ENSG00000160072	ATAD3B	AAA-TOB3|TOB3	ATPase family, AAA domain containing 3B	protein-coding	1.882	nan	2.083	1.281	0.638	0.316	0.313	0.347	0.156	0.302	0.244	0.399	1.144	0.472	0.101	0.825	1.027	1.046	1.552	1.324	1.390	1.034	0.380	2.413	2.313	0.853	nan	nan	6.877	nan	0.960	0.821	0.919	0.442	0.458	1.345	1.536	1.484	0.882	0.688	0.463	0.054	0.064	0.313	0.399	1.293	0.782	0.225	0.364
7762	chr8	77909692	77914614	+	0	NA	intron (NM_001172086, intron 2 of 4)	CpG	371	NM_001079867	5828	Hs.437966	NM_000318	ENSG00000164751	PEX2	PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3	peroxisomal biogenesis factor 2	protein-coding	5.054	2.572	4.667	4.893	4.438	2.348	2.568	5.318	0.330	1.461	0.837	5.053	6.380	4.102	0.102	2.561	3.849	6.891	9.467	9.304	8.280	6.677	4.147	23.560	23.512	4.029	5.033	5.722	10.281	4.370	4.297	2.987	6.405	6.038	5.399	4.797	5.664	3.063	1.583	2.098	3.164	1.429	1.225	2.568	5.053	0.295	3.172	1.753	0.817
5870	chr4	40475972	40487307	+	0	NA	intron (NM_001098634, intron 2 of 6)	AluJb|SINE|Alu	22497	NR_039966	100616274		NR_039966	ENSG00000263642	MIR4802	-	microRNA 4802	ncRNA	0.815	nan	nan	1.144	5.292	2.629	0.223	0.102	0.122	0.292	0.283	1.117	1.193	0.086	0.078	0.463	0.241	0.796	1.108	0.589	0.730	0.345	0.128	0.426	0.415	0.160	0.225	2.596	3.206	0.535	0.211	0.575	0.643	0.513	0.565	0.578	2.590	1.216	1.226	0.526	1.834	0.076	0.092	0.223	1.117	0.017	0.098	0.685	0.785
2356	chr13	79975241	79981891	+	0	NA	intron (NM_001286631, intron 1 of 21)	L2a|LINE|L2	1790	NM_001286632	64062	Hs.558528	NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding	nan	nan	3.419	5.679	4.195	2.309	6.380	1.931	0.096	2.094	1.021	4.139	6.647	2.088	0.081	10.031	8.079	5.843	7.218	9.546	8.329	9.925	5.727	8.621	8.997	1.692	2.136	2.274	4.905	8.411	9.414	7.140	12.319	2.804	3.027	11.247	8.434	1.228	0.700	1.550	5.067	0.458	5.070	6.380	4.139	0.961	1.206	3.380	2.184
4721	chr2	219743207	219762937	+	0	NA	intron (NM_025216, intron 2 of 3)	intron (NM_025216, intron 2 of 3)	7817	NM_025216	80326	Hs.121540	NM_025216	ENSG00000135925	WNT10A	OODD|SSPS|STHAG4	Wnt family member 10A	protein-coding	nan	0.909	nan	0.129	0.503	0.189	1.564	0.118	0.040	0.203	0.219	0.451	2.955	2.569	0.137	2.285	4.910	0.480	1.103	0.754	0.588	0.684	0.131	0.254	0.246	0.483	0.637	0.626	nan	1.000	0.834	0.503	0.878	0.432	0.384	0.862	2.020	0.551	0.430	0.501	0.104	0.144	0.990	1.564	0.451	0.319	0.755	0.255	0.394
7625	chr8	27929372	27952639	+	0	NA	intron (NM_001010906, intron 1 of 18)	L1MC3|LINE|L1	383	NM_001010906	389643	Hs.370129	NM_001010906	ENSG00000189233	NUGGC	C8orf80|HMFN0672|SLIP-GC	nuclear GTPase, germinal center associated	protein-coding	nan	0.868	nan	0.479	0.630	0.263	0.806	0.296	0.124	0.406	0.223	0.549	0.456	0.586	0.082	1.471	1.428	0.857	1.231	nan	1.526	nan	0.840	1.393	1.445	0.452	0.661	0.909	1.420	1.422	1.182	1.879	2.919	0.763	0.924	0.814	1.131	nan	nan	0.311	0.336	0.106	0.073	0.806	0.549	0.126	0.584	4.669	0.292
6548	chr5	169832659	169841512	+	0	NA	intron (NR_109899, intron 1 of 2)	intron (NR_109899, intron 1 of 2)	-20404	NM_004137	3779	Hs.484099	NM_004137	ENSG00000145936	KCNMB1	BKbeta1|K(VCA)beta|SLO-BETA|hbeta1|hslo-beta|k(VCA)beta-1|slo-beta-1	potassium calcium-activated channel subfamily M regulatory beta subunit 1	protein-coding	nan	0.571	0.492	0.020	0.199	0.018	0.204	0.120	0.074	0.144	0.048	0.054	0.577	0.062	0.084	0.989	1.271	5.661	3.652	0.746	0.666	0.274	0.123	0.210	0.220	0.120	0.293	0.218	0.366	0.410	0.412	0.430	0.863	0.211	0.146	0.118	0.129	0.542	0.545	0.031	0.090	0.022	0.314	0.204	0.054	0.205	0.035	0.222	0.014
3700	chr18	24717157	24727635	+	0	NA	intron (NM_031422, intron 2 of 5)	intron (NM_031422, intron 2 of 5)	42906	NM_001256316	83539	Hs.44584	NM_031422	ENSG00000154080	CHST9	GALNAC4ST-2|GalNAc4ST2	carbohydrate sulfotransferase 9	protein-coding	0.734	0.817	0.940	0.158	0.173	0.092	0.244	0.036	0.118	0.342	0.226	0.057	0.327	0.031	0.064	0.310	0.256	0.465	nan	0.502	0.509	4.364	1.179	0.233	0.236	0.134	0.152	0.240	0.193	0.379	0.149	0.099	0.118	5.215	5.823	0.242	0.397	1.446	1.042	0.027	0.101	1.320	0.152	0.244	0.057	0.177	0.022	0.047	0.047
5823	chr4	3292271	3326149	+	0	NA	Intergenic	Intergenic	-6664	NM_198229	6002	Hs.527061	NM_002926	ENSG00000159788	RGS12	-	regulator of G-protein signaling 12	protein-coding	1.253	1.261	nan	1.976	1.009	0.540	0.990	0.270	0.075	0.614	0.342	6.008	1.689	0.263	0.080	2.404	3.083	1.117	1.415	5.276	4.544	nan	0.883	2.788	2.919	0.392	0.676	3.398	5.349	1.084	0.920	1.453	2.350	0.186	0.315	0.325	0.391	nan	0.773	3.167	4.976	0.034	0.422	0.990	6.008	0.042	0.355	1.214	0.131
5871	chr4	40611165	40634982	+	0	NA	intron (NM_001098634, intron 1 of 6)	intron (NM_001098634, intron 1 of 6)	8810	NM_001098634	54502	Hs.518727	NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding	1.013	nan	nan	0.591	0.754	0.371	0.264	0.334	0.101	0.180	0.145	0.366	0.858	0.209	0.100	0.385	0.309	4.243	7.897	0.360	0.363	0.389	0.123	2.689	2.656	0.134	0.229	1.313	1.705	0.400	0.212	1.069	3.112	0.199	0.273	0.609	2.557	1.091	0.988	0.261	0.257	0.044	0.260	0.264	0.366	0.049	0.028	1.186	1.706
6298	chr5	68994544	69034023	+	0	NA	Intergenic	AluSz6|SINE|Alu	-7929	NR_027386	653188	Hs.631974	NR_027386	ENSG00000253203	GUSBP3	-	glucuronidase, beta pseudogene 3	pseudo	0.768	1.931	0.641	0.874	0.767	0.395	0.891	0.182	0.057	2.001	1.447	0.581	2.535	0.374	0.109	0.857	0.865	0.845	1.463	1.353	1.364	4.144	2.122	0.991	0.886	2.555	2.598	1.408	1.830	0.986	0.773	0.187	0.509	3.875	6.204	0.326	0.490	3.576	1.864	0.367	0.947	3.334	0.649	0.891	0.581	0.455	0.466	0.374	0.157
5380	chr3	54582099	54598622	+	0	NA	intron (NM_018398, intron 5 of 37)	MLT1C|LTR|ERVL-MaLR	83524	NR_027122	790952	Hs.720658	NR_027122	ENSG00000265992	ESRG	HESRG	embryonic stem cell related (non-protein coding)	ncRNA	0.544	1.214	nan	0.129	1.148	0.714	0.247	0.101	0.058	0.121	0.079	0.152	0.374	0.014	0.069	0.221	0.171	3.898	10.058	0.254	0.353	1.225	0.316	0.105	0.083	0.126	0.281	0.214	0.262	nan	0.165	0.154	0.259	0.056	0.111	0.109	0.160	0.830	0.541	0.034	0.167	0.035	0.072	0.247	0.152	0.035	0.049	0.030	0.044
5807	chr3	196625108	196626017	+	0	NA	intron (NM_152699, intron 2 of 9)	AluY|SINE|Alu	30835	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding	9.989	9.060	9.279	5.173	8.546	5.829	7.213	5.507	21.581	7.931	10.356	1.709	nan	2.512	7.700	17.052	13.270	13.223	16.219	14.091	15.274	10.934	14.861	12.148	14.005	14.858	12.013	12.282	9.705	16.065	12.327	20.407	17.300	10.652	12.655	16.445	12.567	13.829	14.261	1.804	4.188	3.954	1.938	7.213	1.709	1.050	1.575	4.238	4.895
1220	chr10	115825407	115835862	+	0	NA	Intergenic	Intergenic	26828	NM_000684	153	Hs.99913	NM_000684	ENSG00000043591	ADRB1	ADRB1R|B1AR|BETA1AR|RHR	adrenoceptor beta 1	protein-coding	0.485	nan	0.557	0.068	0.432	0.284	0.086	0.476	0.199	0.230	0.117	0.080	0.290	0.002	0.088	0.623	0.469	7.788	2.719	0.115	0.089	0.912	0.232	0.224	0.227	0.199	0.318	0.520	0.533	0.167	0.112	0.174	0.257	0.109	0.086	0.131	0.116	0.608	0.415	0.043	0.233	0.028	0.058	0.086	0.080		0.231	0.114	0.082
7493	chr7	133441392	133560651	+	0	NA	intron (NR_120513, intron 3 of 3)	Tigger6a|DNA|TcMar-Tigger	8620	NR_120513	101928861	Hs.675747	NR_120513		LOC101928861	-	uncharacterized LOC101928861	ncRNA	nan	nan	nan	0.109	0.353	0.214	0.197	0.205	0.114	0.159	0.219	0.285	1.405	0.094	0.154	0.423	0.308	0.405	0.570	0.430	0.547	nan	0.134	0.269	0.275	2.529	nan	0.267	0.342	nan	0.212	0.194	0.324	1.723	1.945	0.456	1.029	1.639	nan	4.191	0.603	0.655	0.063	0.197	0.285	0.054	0.117	0.073	0.149
3663	chr18	10069779	10093562	+	0	NA	Intergenic	Intergenic	167715	NM_003574	9218	Hs.165195	NM_003574	ENSG00000101558	VAPA	VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding	1.130	0.823	1.134	0.155	0.269	0.135	0.081	0.142	0.142	0.053	0.097	0.311	0.341	0.043	0.108	0.423	0.351	0.211	0.327	0.456	0.485	5.174	1.619	0.201	0.223	0.448	0.686	0.424	0.459	0.779	0.785	0.163	0.244	0.398	0.518	0.297	0.492	0.915	0.719	0.029	0.176	0.091	0.115	0.081	0.311	0.122	0.039	0.100	0.253
5266	chr22	38899238	38904047	+	0	NA	intron (NM_006386, intron 1 of 12)	CpG	703	NM_006386	10521	Hs.528305	NM_006386	ENSG00000100201	DDX17	P72|RH70	DEAD-box helicase 17	protein-coding	7.647	nan	4.527	4.872	8.245	4.504	7.194	3.153	0.430	2.675	1.246	9.995	9.861	8.261	0.259	8.658	7.501	10.361	14.702	7.356	6.679	9.020	7.504	16.503	16.196	4.985	6.736	8.747	15.902	nan	15.426	7.429	9.217	8.962	12.426	11.421	7.312	2.254	1.044	3.041	5.100	2.855	4.780	7.194	9.995	2.398	4.313	3.056	3.698
5276	chr22	40813116	40825147	+	0	NA	intron (NM_001282661, intron 8 of 13)	intron (NM_001282661, intron 8 of 13)	40313	NM_001282660	57591	Hs.654688	NM_020831	ENSG00000196588	MKL1	BSAC|MAL|MRTF-A	megakaryoblastic leukemia (translocation) 1	protein-coding	1.283	nan	0.791	0.720	0.397	0.259	0.775	0.168	0.013	0.602	0.340	2.103	0.309	0.062	0.076	1.521	3.027	0.319	0.512	5.950	5.177	1.994	0.472	0.380	0.368	0.437	nan	1.640	2.500	nan	0.676	0.217	0.270	0.357	0.348	0.643	1.385	0.957	0.632	0.138	0.835	0.056	0.710	0.775	2.103	0.359	0.978	0.024	0.372
7031	chr6	147860932	147893398	+	0	NA	intron (NM_001030060, intron 1 of 1)	Charlie1a|DNA|hAT-Charlie	47337	NM_001030060	389432	Hs.567973	NM_001030060	ENSG00000203727	SAMD5	dJ875H10.1	sterile alpha motif domain containing 5	protein-coding	nan	0.702	nan	0.073	0.177	0.084	0.126	0.349	0.110	0.070	0.092	0.060	0.189	0.027	0.116	0.539	0.278	4.311	6.650	0.255	0.293	0.690	0.311	0.353	0.414	0.280	0.438	0.196	0.196	1.032	0.572	0.646	1.225	0.087	0.102	0.249	0.427	0.236	0.334	0.020	0.065	0.018	0.022	0.126	0.060	0.054	0.041	0.848	0.138
2652	chr14	65313224	65333098	+	0	NA	Intergenic	Intergenic	-33295	NM_001024858	6710	Hs.417303	NM_000347	ENSG00000070182	SPTB	EL3|HS2|HSPTB1|SPH2	spectrin beta, erythrocytic	protein-coding	nan	nan	1.154	0.731	0.384	0.194	0.367	0.151	0.077	0.070	0.097	0.235	0.662	0.066	0.119	0.835	0.994	0.304	0.426	0.494	0.564	0.899	0.281	nan	0.561	0.227	0.430	4.828	nan	0.683	0.419	0.267	0.385	0.344	0.589	0.159	0.256	1.251	0.992	3.675	2.398	0.058	0.159	0.367	0.235	0.029	0.398	0.055	0.075
2337	chr13	71462957	71471684	+	0	NA	Intergenic	Intergenic	-121953	NR_047699	100885781	Hs.372660	NR_047699	ENSG00000226846	LINC00348	-	long intergenic non-protein coding RNA 348	ncRNA	nan	1.072	0.666	0.067	0.250	0.074	0.172	0.069	0.091	0.035	0.066	0.042	0.207	0.037	0.108	1.733	1.264	8.409	7.036	0.281	0.393	nan	0.221	0.243	0.158	0.394	0.373	0.195	0.200	nan	0.174	0.939	1.093	0.062	0.052	0.426	nan	0.064	0.083	0.032	0.091	0.011	0.150	0.172	0.042	0.011	0.037	0.163	0.113
4263	chr2	25561624	25566171	+	0	NA	intron (NM_175630, intron 1 of 3)	intron (NM_175630, intron 1 of 3)	887	NM_022552	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding	4.699	1.774	5.361	4.859	4.637	2.851	4.946	0.661	0.070	6.060	2.408	4.645	13.889	4.104	0.088	1.578	5.645	2.409	2.149	8.422	7.213	5.014	1.765	9.873	7.958	1.393	2.192	6.950	nan	2.165	2.968	2.044	6.116	3.407	2.134	2.062	2.841	1.942	0.894	7.497	9.833	1.125	3.652	4.946	4.645	1.346	5.117	1.803	1.253
5014	chr20	55944631	56078183	+	0	NA	Intergenic	Intergenic	44953	NM_001291780	55544	Hs.236361	NM_017495	ENSG00000132819	RBM38	HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2	RNA binding motif protein 38	protein-coding	1.357	1.507	1.082	0.747	0.534	0.296	0.521	0.313	0.124	0.277	0.192	0.433	0.977	0.216	0.093	5.685	nan	1.822	1.596	0.918	0.908	1.400	0.431	7.994	8.175	0.297	0.522	1.375	1.999	0.607	0.467	4.301	6.682	0.191	0.171	0.361	0.488	1.137	0.876	0.661	0.500	0.030	0.244	0.521	0.433	0.261	0.477	5.265	0.087
2243	chr13	25945571	25955572	+	0	NA	intron (NM_016529, intron 1 of 36)	MIRc|SINE|MIR	4422	NM_016529	51761	Hs.444957	NM_016529	ENSG00000132932	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase phospholipid transporting 8A2	protein-coding	0.695	0.866	0.799	0.258	0.210	0.160	0.218	0.089	0.080	0.204	0.205	0.469	1.066	0.108	0.066	7.134	9.005	0.542	nan	1.665	1.518	0.655	0.141	0.133	0.117	0.122	0.285	0.321	0.341	0.913	0.810	0.405	0.887	0.034	0.069	0.500	1.164	1.256	0.889	0.384	0.142	0.010	0.080	0.218	0.469	0.010	0.031	0.158	0.120
8046	chr9	11647011	11653447	+	0	NA	Intergenic	Intergenic	1037023	NR_110696	101929428	Hs.434446	NR_110696	ENSG00000226717	PTPRD-AS2	-	PTPRD antisense RNA 2 (head to head)	ncRNA	nan	nan	0.641	1.171	2.209	1.142	0.399	0.083	0.167	1.023	0.361	1.298	0.418	0.051	0.137	0.194	0.200	0.148	0.148	0.261	0.280	5.912	4.190	0.152	0.081	0.825	1.047	3.050	2.077	0.438	0.178	0.137	0.236	0.685	0.804	0.143	0.177	6.382	2.952			0.060	0.087	0.399	1.298	0.044	0.205	0.121	0.019
1288	chr11	4690168	4742918	+	0	NA	intron (NM_030774, intron 1 of 1)	intron (NM_030774, intron 1 of 1)	2533	NM_030774	81285	Hs.501758	NM_030774	ENSG00000167332	OR51E2	OR51E3P|OR52A2|PSGR	olfactory receptor family 51 subfamily E member 2	protein-coding	0.532	0.863	0.656	1.171	1.358	0.813	0.087	0.150	0.070	1.791	0.869	0.402	2.301	0.029	0.084	0.365	0.227	0.201	0.379	1.042	1.550	2.519	1.317	0.133	0.139	0.194	0.313	10.331	9.608	0.416	0.205	0.306	0.367	1.395	1.887	0.150	0.326	3.268	1.485	1.553	0.831	0.263	0.016	0.087	0.402	0.007	2.466	0.161	0.075
1087	chr10	29297686	29303098	+	0	NA	Intergenic	Intergenic	165055	NM_001278522	283080		NM_001278522		C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding	0.500	0.598	0.521	0.064	0.346	0.268	0.024	0.166	0.297	0.087	0.108	0.151	0.395		0.108	0.299	0.198	8.992	8.786	0.171	0.268	0.499	0.210	0.255	0.235	0.190	0.189	0.267	0.252	0.196	0.063	0.126	0.190	0.054	0.084	0.272	0.563	0.297	0.245	0.031	0.047	0.035	0.059	0.024	0.151		0.075	0.018	0.064
810	chr1	204606432	204621875	+	0	NA	intron (NM_201630, intron 1 of 1)	intron (NM_201630, intron 1 of 1)	40328	NM_006338	10446	Hs.26312	NM_006338	ENSG00000170382	LRRN2	FIGLER7|GAC1|LRANK1|LRRN5	leucine rich repeat neuronal 2	protein-coding	1.563	2.208	2.776	0.627	3.706	1.947	2.169	0.202	0.062	0.473	0.278	0.507	3.811	0.099	0.113	0.655	0.670	0.662	0.993	2.169	2.188	1.686	0.262	nan	nan	1.416	2.098	2.113	1.857	0.754	0.472	0.315	0.466	0.674	1.499	1.448	4.007	1.422	0.878	2.357	0.676	0.199	0.132	2.169	0.507	0.108	1.074	0.199	0.811
5425	chr3	89070372	89082776	+	0	NA	Intergenic	Intergenic	-80100	NM_005233	2042	Hs.123642	NM_005233	ENSG00000044524	EPHA3	EK4|ETK|ETK1|HEK|HEK4|TYRO4	EPH receptor A3	protein-coding	nan	0.700	0.474	0.043	0.049	0.013	0.123	0.507	0.065	0.064	0.039	0.058	0.146	0.026	0.138	0.185	0.108	0.433	1.069	0.182	0.223	0.151	0.055	0.138	0.120	6.746	7.648	0.111	0.114	0.353	0.198	0.052	0.095	0.030	0.020	0.149	0.319	0.206	0.291	0.018	0.036	0.008	0.013	0.123	0.058	0.016	0.065	0.016	0.020
1587	chr11	95031260	95073218	+	0	NA	Intergenic	Intergenic	-86534	NM_001271594	143686	Hs.120633	NM_144665	ENSG00000149212	SESN3	SEST3	sestrin 3	protein-coding	1.016	nan	1.234	0.079	0.479	0.225	0.420	0.048	0.065	0.135	0.132	0.074	1.139	0.067	0.083	0.672	0.521	0.742	nan	0.607	0.835	0.144	0.074	0.576	0.599	1.710	2.054	0.344	0.320	1.011	0.831	0.947	1.383	0.545	0.592	0.915	nan	0.723	0.614	0.674	0.253	0.204	0.203	0.420	0.074	0.409	0.116	0.603	0.913
5838	chr4	15146558	15153681	+	0	NA	intron (NR_125911, intron 2 of 5)	intron (NR_125911, intron 2 of 5)	145821	NM_001177381	132864	Hs.656937	NM_182485	ENSG00000137449	CPEB2	CPE-BP2|CPEB-2|hCPEB-2	cytoplasmic polyadenylation element binding protein 2	protein-coding	nan	nan	nan	4.189	0.883	0.427	0.702	0.515	0.158	0.987	0.397	0.675	0.719		0.080	0.627	0.452	0.692	1.529	0.672	0.663	11.263	1.535	2.675	2.648	0.477	0.410	1.407	1.429	0.889	0.459	0.111	0.186	0.778	1.849	0.555	0.634	nan	1.002	0.023	0.476	0.148	0.515	0.702	0.675	0.056	1.384	0.014	0.132
227	chr1	38389464	38421798	+	0	NA	intron (NM_005540, intron 6 of 23)	intron (NM_005540, intron 6 of 23)	7098	NM_005540	3633	Hs.449942	NM_005540	ENSG00000204084	INPP5B	5PTase	inositol polyphosphate-5-phosphatase B	protein-coding	1.152	nan	2.137	2.561	0.550	0.312	0.448	0.522	0.205	0.839	0.527	1.292	1.202	1.044	0.135	1.147	1.270	1.648	1.459	1.162	1.195	nan	0.371	1.340	1.503	0.683	1.180	6.396	7.300	nan	0.514	2.467	3.063	0.585	0.549	0.562	1.251	1.589	nan	0.192	0.296	0.128	0.214	0.448	1.292	0.118	0.446	1.769	0.335
4256	chr2	24449343	24466822	+	0	NA	intron (NM_006277, intron 29 of 39)	L1MC1|LINE|L1	60170	NM_001040710	653140	Hs.741736	NM_001040710	ENSG00000186453	FAM228A	C2orf84	family with sequence similarity 228 member A	protein-coding	1.014	0.772	1.020	0.581	0.731	0.285	0.129	0.115	0.129	0.225	0.254	0.226	0.482	0.075	0.120	0.505	0.386	0.352	0.363	1.815	1.740	0.557	0.246	0.645	0.634	0.462	0.647	2.210	nan	0.522	0.174	0.257	0.363	0.335	0.218	0.442	0.880	4.123	1.564	0.043	0.208	0.055	0.086	0.129	0.226	0.067	0.087	0.109	0.207
6462	chr5	138050299	138073979	+	0	NA	Intergenic	Intergenic	26859	NR_134245	105379194	Hs.445981	NR_134244	ENSG00000253404	LOC105379194	-	uncharacterized LOC105379194	ncRNA	1.243	2.851	nan	1.667	1.563	0.637	0.541	0.145	0.122	0.318	0.167	1.594	3.373	0.128	0.124	0.370	0.582	0.673	1.647	0.960	0.803	5.576	1.469	0.806	0.790	0.665	1.001	3.502	2.850	0.537	0.382	0.794	1.345	2.323	1.859	0.345	0.807	1.490	0.828	0.798	1.740	0.569	0.686	0.541	1.594	0.284	0.142	1.100	0.166
7658	chr8	41641862	41651188	+	0	NA	intron (NM_001142446, intron 1 of 42)	intron (NM_001142446, intron 1 of 42)	8615	NM_000037	286	Hs.654438	NM_000037	ENSG00000029534	ANK1	ANK|SPH1|SPH2	ankyrin 1	protein-coding	1.274	nan	1.117	0.283	1.385	0.741	1.504	0.747	0.155	0.657	0.454	0.972	1.185	0.017	0.111	0.829	1.036	0.215	0.443	1.128	1.390	2.949	0.913	0.285	0.300	0.256	0.582	1.686	1.773	4.029	3.651	0.342	0.397	1.573	1.384	1.334	5.595	2.053	1.351	0.533	3.256	0.224	0.059	1.504	0.972	0.417	0.447	0.137	5.276
1860	chr12	19281776	19289025	+	0	NA	intron (NM_001143821, intron 3 of 27)	intron (NM_001143821, intron 3 of 27)	2774	NM_001190860	54477	Hs.188614	NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding	2.167	2.471	3.799	4.619	1.912	1.105	1.811	0.656	0.022	1.605	0.861	2.009	7.512	1.228	0.114	0.767	1.185	2.258	3.421	nan	5.487	6.427	2.799	3.449	3.450	1.776	2.518	3.547	5.054	3.284	3.415	0.461	1.775	0.858	1.050	4.840	6.453	1.413	0.750	4.390	1.864	0.171	5.821	1.811	2.009	0.066	0.842	0.383	2.586
4829	chr20	6397801	6408566	+	0	NA	Intergenic	Intergenic	-4196	NR_109953	101929244	Hs.542488	NR_109953	ENSG00000229876	CASC20	-	cancer susceptibility candidate 20 (non-protein coding)	ncRNA	0.758	1.682	0.668	0.373	0.273	0.210	0.299	0.064	0.074	0.173	0.154	0.189	0.371	0.010	0.102	0.697	0.358	11.121	6.822	0.477	0.592	2.782	0.902	0.692	0.583	0.173	0.371	1.371	1.562	0.518	0.213	0.207	0.306	0.681	1.137	0.206	0.494	0.967	0.563	0.005	0.116	0.130	0.045	0.299	0.189	0.019	0.041	0.065	0.120
8270	chr9	127410673	127462860	+	0	NA	intron (NR_038975, intron 1 of 1)	MIR|SINE|MIR	16051	NR_038975	100379345	Hs.660412	NR_038975	ENSG00000224020	MIR181A2HG	-	MIR181A2 host gene	ncRNA	nan	nan	1.218	1.280	0.529	0.342	0.544	0.911	0.143	0.421	0.334	0.405	nan	2.909	0.147	1.081	1.132	1.894	2.567	1.175	0.888	1.120	0.351	2.576	2.734	0.579	nan	1.068	1.385	1.606	1.442	1.007	1.282	1.212	1.077	1.082	1.561	nan	0.737	0.303	0.109	0.148	0.189	0.544	0.405	0.052	0.192	0.586	0.485
5379	chr3	54451831	54473331	+	0	NA	intron (NM_018398, intron 4 of 37)	intron (NM_018398, intron 4 of 37)	211303	NR_027122	790952	Hs.720658	NR_027122	ENSG00000265992	ESRG	HESRG	embryonic stem cell related (non-protein coding)	ncRNA	0.755	1.845	nan	1.245	3.630	1.750	0.687	0.523	0.060	0.664	0.288	2.544	2.549	0.045	0.087	0.275	0.327	1.161	4.817	3.904	4.290	5.345	1.426	0.126	0.144	0.225	0.395	0.668	0.768	nan	0.271	1.000	1.752	1.554	1.268	0.299	0.974	1.596	0.750	0.667	1.245	0.475	0.657	0.687	2.544	0.108	0.166	2.198	0.162
8277	chr9	129168155	129214373	+	0	NA	intron (NM_033446, intron 7 of 9)	intron (NM_033446, intron 7 of 9)	-18481	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	non-protein coding RNA, repressor of NFAT	ncRNA	nan	nan	0.870	3.103	5.807	3.074	0.478	0.098	0.059	1.240	0.422	2.720	nan	0.036	0.078	0.485	0.777	0.554	0.645	2.236	2.361	2.474	0.745	0.922	0.868	0.734	nan	5.956	4.988	0.920	0.809	0.659	0.702	1.177	1.361	0.337	0.835	nan	1.057	1.906	6.687	0.206	0.660	0.478	2.720	0.254	1.034	0.478	0.130
4477	chr2	119579844	119613954	+	0	NA	Intergenic	Intergenic	8860	NM_001426	2019	Hs.271977	NM_001426	ENSG00000163064	EN1	-	engrailed homeobox 1	protein-coding	0.481	nan	0.418	0.044	0.204	0.103	0.088	0.734	0.090	0.065	0.102	0.060	nan	0.102	0.054	0.239	0.118	0.366	0.478	0.217	nan	0.132	0.085	0.256	0.246	0.101	0.155	0.194	0.222	0.317	0.107	7.609	13.322	0.239	0.145	0.151	0.285	0.108	0.191	0.091	0.036	0.087	0.042	0.088	0.060	0.015	0.009	6.980	0.095
6099	chr4	182966522	183018245	+	0	NA	Intergenic	Intergenic	73285	NR_125905	90768	Hs.175465	NR_027107		LOC90768	-	uncharacterized LOC90768	ncRNA	nan	0.656	nan	0.030	0.301	0.152	0.104	0.072	0.088	0.040	0.061	0.072	0.155	4.943	0.165	0.192	0.097	0.208	0.361	0.267	0.285	0.762	0.412	0.120	0.153	0.082	0.143	0.419	0.339	0.373	0.229	0.068	0.119	0.110	0.178	0.082	0.157	0.444	0.375	0.124	0.177	0.031	0.136	0.104	0.072	0.024	0.006	0.030	0.036
1817	chr12	9557039	9573591	+	0	NA	Intergenic	Intergenic	-5305	NR_144634	728715		NR_144634		LOC728715	-	ovostatin homolog 2	ncRNA	1.303	nan	nan	1.822	0.261	0.165	0.519	0.045	0.039	0.633	0.378	0.466	0.473	0.032	0.115	0.275	0.495	0.498	0.698	nan	1.452	1.864	0.607	0.799	0.764	0.267	0.449	2.005	3.168	0.766	0.882	0.255	0.311	3.609	2.414	0.257	nan	1.150	0.661	0.844	0.345	0.810	0.097	0.519	0.466	0.124	0.446	0.117	0.119
7499	chr7	137338520	137361889	+	0	NA	intron (NM_001321709, intron 4 of 33)	intron (NM_001321709, intron 4 of 33)	180874	NM_001321709	9162	Hs.242947	NM_004717	ENSG00000157680	DGKI	DGK-IOTA	diacylglycerol kinase iota	protein-coding	nan	nan	nan	0.041	0.536	0.261	0.262	0.235	0.089	0.199	0.173	0.067	0.259	0.047	0.156	2.216	4.411	1.988	2.135	0.396	0.531	nan	0.282	10.074	10.955	0.167	nan	0.182	0.158	nan	0.255	1.967	4.258	0.088	0.095	0.286	0.407	1.042	nan	0.047	0.153	0.020	0.028	0.262	0.067	0.146	0.035	3.907	0.063
5300	chr22	46493274	46506240	+	0	NA	intron (NR_027033, intron 4 of 5)	intron (NR_027033, intron 4 of 5)	-8872	NR_029478	406883		NR_029478	ENSG00000197182	MIRLET7A3	LET7A3|MIRNLET7A3|let-7a-3	microRNA let-7a-3	ncRNA	1.511	3.107	nan	1.182	2.968	1.357	0.793	0.606	0.111	1.322	0.682	0.890	1.737	0.475	0.085	2.258	3.463	0.715	1.929	7.157	6.605	0.637	0.196	0.849	0.722	1.023	1.623	1.026	1.344	1.574	1.238	0.550	0.765	1.286	1.281	0.114	0.148	2.570	1.390	1.090	0.314	0.440	0.911	0.793	0.890	0.506	1.559	0.244	0.019
6795	chr6	47623325	47641537	+	0	NA	intron (NM_153839, intron 2 of 10)	intron (NM_153839, intron 2 of 10)	8105	NM_153839	222611	Hs.724860	NM_153839	ENSG00000164393	ADGRF2	GPR111|PGR20|hGPCR35	adhesion G protein-coupled receptor F2	protein-coding	1.106	0.985	0.989	1.512	0.523	0.204	0.288	0.108	0.086	0.878	0.273	0.427	1.147	0.100	0.106	0.503	0.318	0.286	0.342	0.243	0.285	4.596	2.327	0.355	0.261	0.964	1.515	2.806	nan	0.989	0.624	0.178	0.322	1.322	1.971	0.731	1.895	0.868	0.765	0.015	0.054	0.268	0.074	0.288	0.427	0.186	0.481	0.131	0.434
2707	chr14	80028267	80055078	+	0	NA	intron (NM_001105250, intron 2 of 6)	intron (NM_001105250, intron 2 of 6)	295990	NR_073546	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding	nan	0.792	1.208	0.111	0.299	0.133	0.531	0.803	0.309	0.100	0.123	0.062	0.501	0.077	0.117	0.379	0.232	0.848	3.861	0.534	0.611	0.081	0.049	4.635	5.022	1.362	2.189	0.319	0.382	0.651	0.310	0.188	0.267	0.418	0.792	0.223	0.398	0.797	0.861	0.338	0.157	0.232	0.157	0.531	0.062	0.253	0.042	0.040	0.130
6078	chr4	170189945	170192962	+	0	NA	intron (NM_020870, intron 1 of 11)	CpG	796	NM_020870	57630	Hs.301804	NM_020870	ENSG00000154447	SH3RF1	POSH|RNF142|SH3MD2	SH3 domain containing ring finger 1	protein-coding	nan	5.976	3.465	3.817	3.913	2.623	1.196	4.563	0.512	0.884	0.736	5.591	6.104	2.123	0.115	2.291	2.692	13.393	18.532	5.064	4.146	1.622	0.654	5.346	5.207	1.439	2.576	3.790	6.970	3.455	5.299	1.730	5.182	3.152	2.154	4.522	4.621	1.827	1.134	0.959	1.290	0.974	4.127	1.196	5.591	0.705	2.913	1.505	1.108
4854	chr20	11883177	11907404	+	0	NA	intron (NM_001282550, intron 1 of 4)	L1PA8|LINE|L1	-3223	NM_001282554	22903	Hs.709366	NM_014962	ENSG00000132640	BTBD3	dJ742J24.1	BTB domain containing 3	protein-coding	1.954	nan	1.765	2.126	1.507	0.701	0.331	0.222	0.131	1.132	0.593	0.585	3.611	0.040	0.077	1.600	2.195	1.168	2.883	2.740	2.484	4.388	2.351	0.498	0.545	1.168	1.512	2.603	3.505	3.264	3.108	0.736	1.449	3.371	3.335	2.333	4.295	2.116	1.275	1.845	1.165	0.776	0.206	0.331	0.585	0.169	1.797	1.135	1.605
3998	chr19	18805119	18821764	+	0	NA	intron (NM_001098482, intron 1 of 14)	AluSp|SINE|Alu	19016	NM_001098482	23373	Hs.371096	NM_015321	ENSG00000105662	CRTC1	MECT1|TORC-1|TORC1|WAMTP1	CREB regulated transcription coactivator 1	protein-coding	1.255	1.616	2.465	0.744	0.723	0.385	0.342	0.130	0.078	0.293	0.283	1.021	0.661	0.039	0.094	0.487	0.842	0.477	0.777	2.549	2.001	2.254	0.567	0.615	0.696	0.668	1.159	5.488	6.429	0.894	0.884	0.251	0.291	0.381	0.496	0.640	1.484	1.447	0.958	2.511	0.383	0.091	0.052	0.342	1.021	0.123	0.188	0.052	0.309
671	chr1	174920204	174936538	+	0	NA	intron (NM_001330989, intron 4 of 9)	intron (NM_001330989, intron 4 of 9)	-4973	NR_121196	101928696	Hs.666680	NR_121196	ENSG00000229531	LOC101928696	-	uncharacterized LOC101928696	ncRNA	nan	nan	nan	2.348	2.700	1.445	0.904	0.294	0.176	1.536	0.810	3.709	2.089	0.060	0.105	0.655	1.049	0.807	1.410	nan	3.690	1.428	1.289	0.489	0.506	1.096	1.435	3.212	6.259	1.275	0.879	0.980	1.298	0.920	0.596	0.631	nan	1.965	1.224	0.587	1.992	0.199	0.877	0.904	3.709	0.564	0.298	1.305	0.196
1511	chr11	72446685	72464121	+	0	NA	intron (NM_001040118, intron 1 of 34)	MIR3|SINE|MIR	8031	NM_001040118	116985	Hs.503165	NM_015242	ENSG00000186635	ARAP1	CENTD2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	nan	1.233	1.360	0.448	0.785	0.405	0.308	0.455	0.048	0.198	0.122	0.662	1.762	0.510	0.112	2.084	4.361	1.000	0.970	1.690	1.871	1.117	0.501	2.764	2.987	0.628	1.165	1.770	2.476	1.197	1.260	1.909	2.451	0.504	0.646	0.913	1.962	0.808	0.569	0.466	0.791	0.093	0.188	0.308	0.662	0.138	0.669	0.813	0.475
6317	chr5	71217937	71242259	+	0	NA	Intergenic	L1MEf|LINE|L1	-172997	NM_005909	4131	Hs.335079	NM_005909	ENSG00000131711	MAP1B	FUTSCH|MAP5|PPP1R102	microtubule associated protein 1B	protein-coding	0.970	nan	1.921	0.470	2.791	1.549	1.471	0.446	0.079	0.555	0.372	0.153	1.954	0.076	0.099	0.233	0.137	0.226	0.534	0.725	0.760	nan	2.005	0.126	0.134	0.485	nan	1.882	1.683	1.280	1.133	0.104	0.224	4.371	4.986	0.401	1.045	1.450	0.805	0.493	0.550	1.053	0.139	1.471	0.153	0.100	0.450	0.049	0.396
5538	chr3	129216519	129227547	+	0	NA	intron (NM_001280546, intron 18 of 27)	intron (NM_001280546, intron 18 of 27)	-25449	NM_000539	6010	Hs.247565	NM_000539	ENSG00000163914	RHO	CSNBAD1|OPN2|RP4	rhodopsin	protein-coding	1.668	nan	1.454	0.767	0.304	0.172	0.453	0.325	0.178	1.277	0.795	0.570	0.613	0.076	0.088	0.452	0.572	0.306	0.466	2.987	3.162	1.911	0.852	0.464	0.507	1.477	nan	1.316	1.595	2.240	2.251	0.247	0.423	0.201	0.127	0.645	1.263	3.224	1.598	1.453	1.137	0.043	0.083	0.453	0.570	1.990	1.930	0.089	0.279
5857	chr4	27269039	27282758	+	0	NA	intron (NR_125921, intron 3 of 5)	intron (NR_125921, intron 3 of 5)	56797	NR_125921	101929199	Hs.570815	NR_125921	ENSG00000249699	LOC101929199	-	uncharacterized LOC101929199	ncRNA	0.539	1.503	nan	4.189	0.241	0.224	0.661	0.076	0.035	3.202	1.422	0.610	2.345	0.050	0.082	0.339	0.176	0.121	0.167	0.309	0.393	7.695	2.755	0.148	0.118	0.110	0.229	1.425	1.167	0.353	0.121	0.133	0.124	5.386	7.569	0.081	0.156	nan	1.233	0.012	0.079	1.449	0.098	0.661	0.610	0.015	0.326	0.058	0.009
2423	chr13	105736304	105745664	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-377232	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding	0.794	0.821	0.681	0.160	0.634	0.240	0.289	0.096	0.119	0.084	0.124	0.681	1.097	0.035	0.102	1.041	0.670	9.099	5.572	1.073	1.255	0.176	0.123	9.835	9.838	0.325	nan	1.042	1.196	0.849	0.541	0.143	0.263	0.050	0.059	0.746	nan	0.118	0.160	0.030	0.485	0.060	0.084	0.289	0.681	0.123	0.107	0.092	0.621
6488	chr5	143743163	143786920	+	0	NA	intron (NM_020768, intron 3 of 3)	intron (NM_020768, intron 3 of 3)	214604	NM_020768	57528	Hs.7093	NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding	nan	0.856	0.668	0.228	0.289	0.120	0.076	0.075	0.052	0.397	0.225	0.139	1.042	0.037	0.106	0.153	0.086	0.220	0.316	0.496	0.471	1.817	0.524	0.079	0.076	3.217	3.491	0.412	0.517	0.414	0.204	0.110	0.167	1.956	1.919	0.284	0.723	0.775	0.538	0.157	0.357	0.661	0.054	0.076	0.139	0.035	0.060	0.031	0.144
663	chr1	173223308	173249936	+	0	NA	intron (NR_037845, intron 2 of 2)	Charlie25|DNA|hAT-Charlie	-60170	NM_003326	7292	Hs.181097	NM_003326	ENSG00000117586	TNFSF4	CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1	tumor necrosis factor superfamily member 4	protein-coding	nan	nan	nan	0.122	0.166	0.111	0.222	0.520	0.133	0.099	0.146	0.032	0.310	0.064	0.115	0.586	0.572	6.653	5.089	nan	0.376	0.146	0.083	0.238	0.266	0.209	0.374	0.248	0.280	0.349	0.141	0.440	0.833	0.065	0.095	0.170	nan	0.220	0.347	0.017	0.056	0.018	0.033	0.222	0.032		0.046	0.327	0.079
4301	chr2	40466333	40486308	+	0	NA	intron (NM_021097, intron 1 of 9)	intron (NM_021097, intron 1 of 9)	181124	NM_001112801	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding	0.935	nan	1.079	1.153	3.155	1.701	0.973	0.484	0.080	0.691	0.494	2.253	1.325	0.027	0.161	0.345	0.290	0.313	0.482	nan	2.173	5.511	3.468	0.289	0.259	1.584	1.693	2.013	3.651	0.512	0.319	0.127	0.296	0.540	0.459	0.669	nan	nan	0.836	0.586	1.423	0.043	0.378	0.973	2.253	0.044	0.078	0.052	0.426
5050	chr20	62579230	62590789	+	0	NA	non-coding (NR_027287, exon 1 of 1)	non-coding (NR_027287, exon 1 of 1)	272	NR_027287	100113386	Hs.551552	NR_027287		UCKL1-AS1	UCKL1-AS|UCKL1AS|UCKL1OS	UCKL1 antisense RNA 1	ncRNA	3.007	3.040	3.981	3.419	1.908	1.067	1.350	0.663	0.208	0.831	0.459	2.188	6.096	1.643	0.119	4.962	nan	1.462	2.007	3.424	3.404	3.813	1.369	9.666	10.364	2.205	3.515	4.626	6.821	2.598	3.172	1.863	3.325	1.229	1.287	2.034	2.721	2.220	1.391	1.734	2.904	0.231	1.101	1.350	2.188	1.626	2.643	1.990	1.264
4326	chr2	47554815	47575811	+	0	NA	intron (NR_110208, intron 1 of 4)	L1MEc|LINE|L1	6900	NR_110207	101927043	Hs.515976	NR_110207	ENSG00000234690	LOC101927043	-	uncharacterized LOC101927043	ncRNA	1.270	nan	1.783	2.482	1.647	0.885	1.328	0.377	0.161	1.132	0.739	2.100	7.982	0.769	0.125	3.071	3.680	0.441	0.645	nan	3.595	3.922	1.585	6.391	6.942	0.410	0.702	8.162	8.892	3.080	2.842	2.116	2.643	1.267	1.179	1.672	nan	nan	1.165	5.759	3.508	0.203	0.701	1.328	2.100	0.560	0.668	1.676	0.324
5184	chr22	19465004	19468836	+	0	NA	promoter-TSS (NM_001178010)	promoter-TSS (NM_001178010)	-182	NM_005659	7353	Hs.474213	NM_005659	ENSG00000070010	UFD1L	UFD1	ubiquitin fusion degradation 1 like (yeast)	protein-coding	5.102	nan	3.972	4.037	5.666	3.196	3.373	4.890	0.380	2.859	0.972	4.599	8.020	3.941	0.090	8.730	7.006	8.115	11.295	7.397	8.687	7.404	7.266	16.447	17.457	5.570	7.083	8.183	12.089	9.929	9.837	5.932	7.801	8.172	11.845	7.649	4.915	6.493	3.990	1.861	2.530	1.689	1.754	3.373	4.599	1.427	2.812	1.239	1.388
4295	chr2	38976281	38982927	+	0	NA	promoter-TSS (NM_001031684)	promoter-TSS (NM_001031684)	-968	NM_001195446	6432	Hs.309090	NM_006276	ENSG00000115875	SRSF7	9G8|AAG3|SFRS7	serine and arginine rich splicing factor 7	protein-coding	4.853	nan	nan	4.176	5.012	2.705	3.163	1.507	0.193	2.496	1.548	3.997	8.681	4.798	0.125	5.767	6.671	6.179	7.762	8.601	7.415	7.516	3.877	11.292	nan	3.625	4.988	8.052	10.838	nan	8.527	3.664	6.943	3.540	2.664	8.737	10.698	3.770	2.517	3.284	4.316	0.704	2.301	3.163	3.997	1.086	2.561	2.318	3.725
5802	chr3	195527504	195538882	+	0	NA	intron (NM_018406, intron 1 of 24)	L2a|LINE|L2	5651	NM_001322468	4585	Hs.369646	NM_004532	ENSG00000145113	MUC4	ASGP|HSA276359|MUC-4	mucin 4, cell surface associated	protein-coding	nan	0.977	2.216	0.221	0.834	0.539	0.158	0.135	0.133	0.165	0.202	0.290	nan	0.028	0.061	0.250	0.165	0.264	0.410	0.698	0.585	1.026	0.336	0.350	0.398	0.176	0.378	1.873	2.246	0.579	0.332	0.721	0.806	0.212	0.236	0.489	0.509	0.874	0.661	2.711	8.681	0.033	0.191	0.158	0.290	0.092	0.107	0.355	0.151
1946	chr12	52537541	52560407	+	0	NA	Intergenic	Intergenic	36810	NM_182507	144501	Hs.140978	NM_182507	ENSG00000167767	KRT80	KB20	keratin 80	protein-coding	nan	0.999	0.728	0.187	0.467	0.240	1.238	0.696	0.169	0.274	0.182	0.977	1.819	0.148	0.058	nan	0.937	1.487	4.885	0.915	nan	1.928	0.799	1.054	1.136	0.425	nan	0.737	nan	0.560	0.442	0.654	0.669	0.904	0.747	0.300	0.474	1.088	0.795	0.444	0.249	0.271	0.168	1.238	0.977	0.480	0.115	0.126	0.054
2276	chr13	39552152	39561825	+	0	NA	intron (NM_001144033, intron 1 of 7)	PRIMA4_LTR|LTR|ERV1	8008	NM_145286	161003	Hs.327794	NM_145286	ENSG00000133115	STOML3	Epb7.2l|SRO	stomatin like 3	protein-coding	0.638	1.116	1.449	0.429	0.374	0.283	1.439	0.100	0.116	0.684	0.150	0.235	0.829	0.104	0.058	0.483	0.566	0.105	0.205	0.304	0.384	9.801	5.030	0.144	0.126	0.333	0.519	0.115	0.150	0.362	0.208	0.375	0.369	3.019	3.539	0.319	0.458	2.470	1.251	0.070	0.128	0.474	0.309	1.439	0.235		0.536	0.050	0.089
3465	chr17	55332591	55339787	+	0	NA	intron (NM_170721, intron 3 of 9)	intron (NM_170721, intron 3 of 9)	1815	NM_170721	124540	Hs.658922	NM_138962	ENSG00000153944	MSI2	MSI2H	musashi RNA binding protein 2	protein-coding	3.098	2.482	2.943	3.338	8.722	4.471	2.176	0.752	0.136	4.107	1.829	9.199	7.315	1.115	0.128	2.509	3.955	2.494	3.110	8.305	8.674	3.443	1.752	nan	6.928	1.808	2.378	nan	nan	3.242	3.455	1.470	3.946	3.687	3.817	2.788	5.014	2.788	1.754	1.603	3.294	0.899	2.275	2.176	9.199	1.421	2.050	1.663	2.510
3629	chr17_gl000205_random	32337	35740	+	0	NA	Intergenic	Intergenic	-82585	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo	nan	2.152	7.435	5.609	3.413	2.052	4.278	2.056	0.324	2.772	1.669	5.121	7.945	2.765	0.155	5.585	4.866	nan	nan	4.625	4.499	10.257	3.824	10.526	11.604	4.695	6.278	1.742	2.546	16.756	14.466	3.853	6.995	3.279	4.107	11.911	9.800	3.947	2.178	2.572	2.251	1.236	4.597	4.278	5.121	2.627	2.565	3.344	3.723
5501	chr3	119181074	119188764	+	0	NA	Intergenic	AluSz6|SINE|Alu	-2390	NM_018266	55254	Hs.594171	NM_018266	ENSG00000176142	TMEM39A	-	transmembrane protein 39A	protein-coding	3.836	nan	1.933	2.392	2.282	1.251	1.777	2.142	0.293	0.871	0.577	2.241	2.955	1.396	0.088	3.157	3.052	2.573	3.948	3.839	nan	9.961	4.337	7.508	8.299	nan	4.563	3.349	5.245	6.866	6.458	1.861	1.943	1.989	2.302	4.375	4.877	3.478	2.081	2.490	1.546	0.186	1.408	1.777	2.241	0.659	1.394	0.413	1.022
2644	chr14	63506630	63514916	+	0	NA	intron (NM_172375, intron 1 of 9)	intron (NM_172375, intron 1 of 9)	1183	NM_172375	27133	Hs.27043	NM_139318	ENSG00000140015	KCNH5	EAG2|H-EAG2|Kv10.2|hEAG2	potassium voltage-gated channel subfamily H member 5	protein-coding	nan	nan	0.559	0.852	1.070	0.620	0.990	0.162	0.097	1.536	0.979	2.776	3.139	5.747	0.175	0.259	0.170	0.259	0.492	10.301	9.312	5.316	1.872	nan	0.425	0.191	0.281	1.191	nan	0.921	0.571	0.136	0.187	1.845	0.709	0.129	0.213	4.634	2.272	0.234	0.333	0.127	2.751	0.990	2.776	0.280	0.613	0.012	0.073
6678	chr6	26184805	26212939	+	0	NA	promoter-TSS (NM_003522)	promoter-TSS (NM_003522)	649	NM_003530	8351	Hs.532144	NM_003530	ENSG00000197409	HIST1H3D	H3/b|H3FB	histone cluster 1 H3 family member d	protein-coding	4.228	1.628	nan	4.128	4.425	2.326	0.795	2.016	0.407	1.661	1.043	3.454	nan	7.104	0.215	7.056	9.602	5.435	nan	6.101	3.575	15.288	6.344	9.360	9.550	3.009	3.939	5.684	5.960	5.999	7.562	1.326	3.109	7.300	6.033	6.822	6.700	2.115	1.224	1.261	4.436	0.945	1.590	0.795	3.454	0.842	1.787	1.697	2.397
6063	chr4	160183399	160237338	+	0	NA	intron (NM_014247, intron 1 of 23)	L2a|LINE|L2	21370	NM_014247	9693	Hs.744884	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor 2	protein-coding	nan	nan	nan	0.148	0.282	0.147	0.065	0.759	0.099	0.064	0.088	0.111	0.265	1.505	0.116	0.197	0.162	0.317	0.418	0.180	0.236	0.229	0.096	0.207	0.213	0.316	0.491	0.393	0.434	0.389	0.176	0.156	0.274	0.083	0.111	0.237	0.408	0.285	0.266	0.012	0.048	0.023	0.102	0.065	0.111	0.031	0.115	0.079	0.054
5811	chr3	197210915	197250907	+	0	NA	Intergenic	Intergenic	51947	NM_203314	622	Hs.274539	NM_004051	ENSG00000161267	BDH1	BDH|SDR9C1	3-hydroxybutyrate dehydrogenase 1	protein-coding	nan	1.117	1.357	0.191	0.582	0.305	0.645	0.907	0.218	0.556	0.263	0.270	nan	0.197	0.074	0.563	0.657	0.667	1.335	0.855	0.791	0.864	0.290	1.383	1.432	0.713	1.183	0.787	0.981	2.679	2.609	0.468	0.592	0.361	0.572	1.130	3.180	1.044	0.745	2.603	0.319	0.086	0.705	0.645	0.270	0.374	0.191	0.235	1.061
3155	chr16	66349147	66380670	+	0	NA	Intergenic	Intergenic	-35602	NM_001795	1003	Hs.76206	NM_001795	ENSG00000179776	CDH5	7B4|CD144	cadherin 5	protein-coding	nan	nan	1.151	1.989	1.740	0.896	0.454	0.100	0.067	0.746	0.336	6.324	2.979	0.055	0.069	0.326	0.211	0.123	0.148	4.185	4.729	3.349	1.087	0.251	0.317	0.285	nan	3.388	3.612	0.583	0.438	0.154	0.239	0.732	0.395	0.193	0.314	2.835	1.331	1.778	1.725	0.154	0.043	0.454	6.324	0.218	1.342	0.041	0.036
8169	chr9	80407984	80423970	+	0	NA	intron (NM_002072, intron 3 of 6)	intron (NM_002072, intron 3 of 6)	-152745	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	G protein subunit alpha 14	protein-coding	0.752	2.080	0.808	4.803	0.694	0.422	0.284	0.347	0.131	0.424	0.176	0.425	1.434	0.089	0.084	0.222	0.242	0.739	0.691	0.431	0.568	0.937	0.566	0.182	0.190	0.341	0.479	2.046	2.939	0.201	0.096	0.129	0.302	0.864	1.354	0.310	0.437	1.731	1.200	0.181	0.497	0.065	0.070	0.284	0.425	0.030	0.222	0.054	0.048
7510	chr7	139636630	139655393	+	0	NA	intron (NM_001130966, intron 9 of 16)	AluJo|SINE|Alu	117059	NM_001061	6916	Hs.520757	NM_001061	ENSG00000059377	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1	protein-coding	nan	nan	nan	0.084	0.273	0.232	0.239	0.112	0.123	0.410	0.289	0.398	0.270	0.063	0.164	0.493	0.335	0.235	0.268	0.405	0.462	nan	0.425	0.421	0.377	0.123	nan	0.469	0.473	nan	0.172	0.262	0.317	0.264	0.188	0.195	0.474	3.231	nan	0.074	0.134	0.041	0.029	0.239	0.398	0.036	0.086	0.069	0.079
7327	chr7	73866541	73905454	+	0	NA	intron (NM_001199207, intron 1 of 26)	BC200|scRNA|scRNA	17877	NM_001199207	9569	Hs.647056	NM_005685	ENSG00000006704	GTF2IRD1	BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1	GTF2I repeat domain containing 1	protein-coding	nan	1.227	1.126	0.815	2.712	1.455	1.435	1.525	0.464	1.097	0.600	4.063	2.367	3.780	0.243	1.054	1.449	1.654	nan	2.733	2.427	1.185	0.455	0.855	0.898	0.425	nan	2.761	nan	1.404	1.399	1.088	1.745	1.316	1.459	1.328	1.624	1.578	0.936	0.862	2.165	0.258	1.276	1.435	4.063	0.613	0.644	1.313	0.441
3280	chr17	10598254	10610906	+	0	NA	intron (NM_020233, intron 1 of 3)	intron (NM_020233, intron 1 of 3)	3653	NM_020233	56985	Hs.47668	NM_020233	ENSG00000170222	ADPRM	C17orf48|MDS006|NBLA03831	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding	1.959	1.010	1.384	0.449	0.838	0.506	0.636	0.579	0.089	0.229	0.104	0.710	1.307	1.235	0.104	1.543	1.429	1.555	nan	1.149	1.145	1.296	0.373	1.227	1.204	0.934	1.333	1.359	1.722	nan	1.548	0.547	0.999	0.417	0.391	3.393	7.423	0.390	0.272	0.168	0.315	0.052	0.258	0.636	0.710	0.306	1.073	0.109	3.378
1465	chr11	64900411	64903892	+	0	NA	promoter-TSS (NM_032431)	promoter-TSS (NM_032431)	-148	NM_172230	84447	Hs.75859	NM_032431	ENSG00000162298	SYVN1	DER3|HRD1	synoviolin 1	protein-coding	nan	4.827	4.598	7.227	5.266	3.268	4.579	2.962	0.279	2.953	1.117	6.864	12.995	5.670	0.170	9.848	11.479	7.840	11.878	12.141	14.184	11.355	9.269	13.126	15.290	4.662	5.680	10.339	17.142	7.904	8.010	8.608	12.524	7.635	10.057	6.802	5.465	4.824	2.271	5.793	5.109	1.792	2.860	4.579	6.864	1.305	3.880	3.800	2.057
2990	chr15	91656509	91661909	+	0	NA	intron (NM_001323039, intron 1 of 12)	(CATA)n|Simple_repeat|Simple_repeat	14323	NM_001323040	9899	Hs.21754	NM_014848	ENSG00000185518	SV2B	HsT19680	synaptic vesicle glycoprotein 2B	protein-coding	nan	nan	nan	1.935	2.511	1.397	0.143	0.068	0.030	2.768	1.361	0.731	2.620	0.021	0.039	1.529	4.052	9.612	10.011	0.515	0.951	6.822	3.443	0.747	0.518	0.160	0.370	2.731	2.437	nan	0.826	2.918	2.953	2.670	2.617	1.504	5.444	2.554	0.992		0.626	0.741	0.044	0.143	0.731	0.019	0.443	1.290	1.190
7366	chr7	85403867	85407954	+	0	NA	Intergenic	Intergenic	355472	NR_134240	105375380	Hs.679608	NR_134240	ENSG00000225128	LINC00972	-	long intergenic non-protein coding RNA 972	ncRNA	0.798	0.602	0.688	0.095	0.246	0.236	0.094	2.987	0.236	0.184	0.224	0.029	0.191	0.187	0.178	7.500	11.227	1.703	0.385	0.245	0.253	0.161	0.042	5.308	4.761	1.022	1.289	0.418	0.359	0.448	0.109	9.716	12.232	1.057	1.238	0.318	nan	1.120	0.875	0.013	0.088	0.279	0.038	0.094	0.029		0.075	6.050	0.120
941	chr1	236061550	236089210	+	0	NA	Intergenic	L2c|LINE|L2	-28372	NM_001301365	1130	Hs.532411	NM_000081	ENSG00000143669	LYST	CHS|CHS1	lysosomal trafficking regulator	protein-coding	1.451	2.106	1.896	0.474	2.274	1.129	1.544	3.442	0.442	0.790	0.312	0.841	1.091	0.228	0.104	0.407	0.499	0.865	1.816	0.654	0.674	nan	0.728	0.315	0.330	0.825	1.181	nan	1.210	0.765	0.649	0.149	0.235	2.300	3.230	0.374	0.743	nan	0.634	0.711	0.055	0.716	0.371	1.544	0.841	0.243	0.356	0.036	0.116
6826	chr6	56654713	56719929	+	0	NA	intron (NM_001144769, intron 4 of 96)	L1MEc|LINE|L1	21142	NM_183380	667	Hs.604915	NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding	1.709	1.163	nan	0.466	0.231	0.096	0.645	1.389	0.200	0.425	0.293	0.118	1.333	0.617	0.136	0.430	0.360	0.431	0.799	0.690	0.624	1.006	0.421	0.530	0.557	2.043	2.619	1.020	1.264	1.191	1.055	0.205	0.443	2.401	3.772	1.835	4.224	0.811	0.674	0.410	0.564	0.777	0.557	0.645	0.118	0.178	0.290	0.091	1.395
3436	chr17	46120685	46140649	+	0	NA	intron (NM_001330261, intron 2 of 5)	intron (NM_001330261, intron 2 of 5)	4981	NM_003204	4779	Hs.514284	NM_003204	ENSG00000082641	NFE2L1	LCR-F1|NRF1|TCF11	nuclear factor, erythroid 2 like 1	protein-coding	1.712	1.701	nan	2.018	3.032	1.513	1.959	2.452	0.299	1.604	0.726	1.878	4.355	1.567	0.140	3.165	3.503	2.600	3.903	2.478	nan	2.915	1.334	10.350	10.605	1.689	2.133	6.036	nan	3.350	2.780	4.263	4.484	1.976	2.419	2.286	4.888	1.434	0.796	1.544	3.406	0.506	1.163	1.959	1.878	0.588	1.267	1.523	0.922
4848	chr20	10500617	10509768	+	0	NA	intron (NM_001009608, intron 2 of 7)	intron (NM_001009608, intron 2 of 7)	89241	NM_001009608	128710	Hs.668782	NM_001009608	ENSG00000149346	SLX4IP	C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3	SLX4 interacting protein	protein-coding	1.319	nan	0.918	2.285	0.583	0.369	2.005	0.918	0.282	0.308	0.173	0.301	2.204	0.095	0.100	0.871	1.018	0.561	0.659	0.710	0.547	9.727	2.684	0.272	0.358	2.396	3.752	3.043	5.005	1.355	1.075	0.230	0.356	0.943	1.459	0.422	1.002	1.431	0.973	0.201	0.622	0.052	0.551	2.005	0.301	0.604	4.444	0.087	0.179
1869	chr12	24829907	24872971	+	0	NA	Intergenic	L2c|LINE|L2	-114337	NR_029451	144360	Hs.350668	NM_144667	ENSG00000197503	LINC00477	C12orf67|FAM191B	long intergenic non-protein coding RNA 477	ncRNA	nan	nan	nan	0.207	0.296	0.160	0.249	0.043	0.049	0.143	0.125	0.128	0.243	2.343	0.166	0.196	0.117	0.310	0.335	0.389	0.498	0.161	0.093	0.388	0.380	0.164	0.265	0.320	0.344	0.379	0.184	0.138	0.171	0.063	0.083	0.357	0.600	0.324	0.382	0.016	0.058	0.011	0.096	0.249	0.128	0.020	0.019	0.027	0.077
3190	chr16	81756265	81786524	+	0	NA	Intergenic	AluSz6|SINE|Alu	-41469	NM_002661	5336	Hs.372303	NM_002661	ENSG00000197943	PLCG2	APLAID|FCAS3|PLC-IV|PLC-gamma-2	phospholipase C gamma 2	protein-coding	nan	1.009	0.742	0.734	0.783	0.400	2.030	0.120	0.097	0.140	0.166	1.636	1.164	0.106	0.084	1.523	1.445	0.691	0.748	1.116	1.089	1.881	0.736	4.055	4.297	0.297	0.538	0.889	1.071	0.661	0.424	0.639	0.764	0.540	0.543	0.228	0.375	0.876	0.663	0.350	0.430	0.123	0.228	2.030	1.636	0.195	1.015	0.189	0.036
6860	chr6	82458865	82464308	+	0	NA	exon (NM_017633, exon 2 of 3)	exon (NM_017633, exon 2 of 3)	842	NM_017633	55603	Hs.10784	NM_017633	ENSG00000112773	FAM46A	C6orf37|XTP11	family with sequence similarity 46 member A	protein-coding	2.453	2.918	4.812	4.163	1.766	0.752	2.581	6.785	0.533	1.061	0.443	2.130	14.924	0.598	0.067	3.393	6.181	2.355	3.709	0.351	0.353	3.823	1.927	4.163	3.794	1.131	1.938	2.457	4.363	1.601	2.242	1.139	3.817	3.371	1.961	0.533	1.369	2.058	1.015	0.677	2.121	0.334	1.619	2.581	2.130	0.303	6.523	0.543	0.241
7096	chr6	166073040	166085900	+	0	NA	Intergenic	Intergenic	-3882	NM_001130690	10846	Hs.348762	NM_006661	ENSG00000112541	PDE10A	ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19	phosphodiesterase 10A	protein-coding	0.450	nan	0.525	0.937	0.155	0.080	0.129	0.059	0.038	0.048	0.059	2.126	0.286	0.058	0.084	2.123	2.069	0.805	1.008	3.655	2.802	0.212	0.089	0.101	0.114	0.069	0.093	0.744	2.182	nan	0.358	0.188	0.394	0.047	0.094	0.086	0.137	0.609	0.363	0.026	0.069	0.015	0.030	0.129	2.126	0.015	4.894	0.038	0.019
3481	chr17	57574936	57593615	+	0	NA	intron (NR_110813, intron 1 of 2)	MIR|SINE|MIR	19943	NR_110813	101927728	Hs.569720	NR_110813	ENSG00000265313	LINC01476	-	long intergenic non-protein coding RNA 1476	ncRNA	1.404	1.451	1.422	0.268	0.499	0.318	0.849	0.221	0.129	0.330	0.283	0.161	0.755	0.110	0.102	0.614	0.602	0.280	0.521	0.477	0.547	0.978	0.292	nan	0.488	1.557	2.331	nan	nan	1.952	1.126	0.277	0.405	2.743	2.569	2.408	5.639	0.748	0.598	0.060	0.216	0.917	0.370	0.849	0.161	0.482	0.071	0.121	1.473
3583	chr17	76347057	76363190	+	0	NA	exon (NM_003955, exon 2 of 2)	exon (NM_003955, exon 2 of 2)	1037	NM_003955	9021	Hs.527973	NM_003955	ENSG00000184557	SOCS3	ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3	suppressor of cytokine signaling 3	protein-coding	1.600	2.763	1.121	0.710	1.986	0.924	1.751	1.361	0.384	0.276	0.251	1.922	3.364	3.388	0.129	1.497	1.965	1.248	2.474	2.614	2.513	1.543	0.585	0.847	0.986	nan	0.983	1.943	4.450	1.225	0.818	0.395	0.438	0.529	0.472	0.630	0.806	nan	0.619	0.973	1.631	0.060	0.299	1.751	1.922	0.199	3.216	0.121	0.107
4149	chr19	55830857	55853462	+	0	NA	Intergenic	L2a|LINE|L2	-5451	NM_001282011	284417	Hs.382625	NM_001085488	ENSG00000180061	TMEM150B	TMEM224|TTN2	transmembrane protein 150B	protein-coding	1.864	1.320	2.062	1.313	2.261	1.318	1.216	0.301	0.139	0.825	0.483	1.771	2.116	1.007	0.118	2.630	3.837	1.413	2.170	3.358	2.946	3.362	1.965	1.298	1.297	1.098	1.584	2.157	3.219	2.080	1.945	1.572	1.755	1.573	1.298	1.537	1.985	1.425	0.931	1.638	2.349	0.468	1.108	1.216	1.771	0.671	0.717	0.802	0.557
7798	chr8	95446279	95451505	+	0	NA	exon (NM_001256141, exon 1 of 2)	exon (NM_001256141, exon 1 of 2)	288	NM_001205263	25788	Hs.30561	NM_006550	ENSG00000197275	RAD54B	RDH54	RAD54 homolog B (S. cerevisiae)	protein-coding	2.848	1.265	1.676	0.375	2.410	1.252	1.370	1.567	0.186	0.714	0.367	2.373	0.605	0.510	0.077	1.955	2.478	9.643	11.251	0.910	0.980	2.924	1.280	1.526	1.452	2.357	2.137	1.085	0.848	3.058	2.133	1.786	4.424	0.715	1.130	3.874	8.239	0.991	0.649	0.086	0.224	0.169	0.198	1.370	2.373	0.074	0.503	1.978	2.420
102	chr1	16466229	16509133	+	0	NA	Intergenic	AluSc|SINE|Alu	-5077	NM_004431	1969	Hs.171596	NM_004431	ENSG00000142627	EPHA2	ARCC2|CTPA|CTPP1|CTRCT6|ECK	EPH receptor A2	protein-coding	1.555	0.852	nan	0.225	0.309	0.196	0.765	1.140	0.266	0.322	0.191	0.129	0.765	2.233	0.119	0.868	1.254	1.024	3.764	1.017	1.096	1.188	0.310	0.835	nan	0.569	nan	0.801	1.189	nan	0.537	0.503	0.628	0.244	0.344	0.467	0.928	0.870	0.593	0.042	0.043	0.026	0.148	0.765	0.129	0.218	0.294	0.201	0.211
5414	chr3	79113462	79139202	+	0	NA	intron (NM_002941, intron 3 of 30)	L1MA9|LINE|L1	-57723	NM_133631	6091	Hs.744218	NM_002941	ENSG00000169855	ROBO1	DUTT1|SAX3	roundabout guidance receptor 1	protein-coding	0.636	0.581	0.636	0.077	0.122	0.074	0.074	0.058	0.006	0.042	0.080	0.107	0.188	0.047	0.087	0.208	0.136	0.321	nan	0.304	0.440	0.161	0.089	0.096	0.135	3.803	3.645	0.216	0.264	0.445	0.211	0.076	0.115	0.040	0.069	0.226	nan	0.291	0.290	0.011	0.066	0.015	0.052	0.074	0.107	0.015	0.039	0.027	0.068
1218	chr10	115610616	115616999	+	0	NA	promoter-TSS (NM_198514)	promoter-TSS (NM_198514)	168	NM_014881	9937	Hs.1560	NM_014881	ENSG00000198924	DCLRE1A	PSO2|SNM1|SNM1A	DNA cross-link repair 1A	protein-coding	3.568	nan	4.111	3.676	6.912	3.640	1.921	2.680	0.326	2.276	1.116	5.692	8.136	2.497	0.128	6.034	5.524	7.568	9.781	4.063	4.205	9.157	5.550	14.126	15.001	3.517	3.968	11.507	17.020	4.126	3.698	4.711	7.047	4.152	4.746	4.694	3.560	3.007	1.323	2.365	3.161	0.841	1.856	1.921	5.692	0.640	3.308	2.799	1.881
3483	chr17	57763544	57797114	+	0	NA	intron (NM_001015509, intron 1 of 2)	MER47A|DNA|TcMar-Tigger	-4497	NM_001329395	81671	Hs.444569	NM_030938	ENSG00000062716	VMP1	EPG3|TANGO5|TMEM49	vacuole membrane protein 1	protein-coding	1.714	1.437	0.973	0.737	1.150	0.603	0.552	0.663	0.187	0.487	0.334	0.470	1.143	2.423	0.206	1.716	1.795	1.328	2.085	1.182	1.310	1.876	0.714	nan	3.629	1.232	1.679	nan	nan	2.107	1.908	1.202	1.739	0.978	1.322	1.598	2.353	0.937	0.716	0.209	0.472	0.133	0.457	0.552	0.470	0.128	0.335	0.393	0.564
4227	chr2	15812026	15820204	+	0	NA	Intergenic	Intergenic	-14791	NR_110201	101926966	Hs.502835	NR_110201	ENSG00000231031	LINC01804	-	long intergenic non-protein coding RNA 1804	ncRNA	0.608	0.523	0.650	0.248	0.135	0.138	0.047	0.052	0.059	0.072	0.124	0.029	1.793	0.028	0.077	0.305	0.210	0.285	0.654	0.283	0.329	0.236	0.096	0.164	0.102	0.180	0.299	0.332	nan	0.534	0.324	6.863	9.696	0.042	0.039	0.415	nan	0.270	0.399	0.429	0.133	0.052	0.049	0.047	0.029	0.024	0.050	2.733	0.114
2398	chr13	100373628	100413167	+	0	NA	intron (NR_120421, intron 4 of 4)	intron (NR_120421, intron 4 of 4)	-12142	NR_120383	101927465	Hs.130690	NR_046525		CLYBL-AS1	-	CLYBL antisense RNA 1	ncRNA	0.924	1.091	0.786	0.208	0.283	0.182	5.155	0.115	0.078	0.307	0.277	0.172	0.449	0.055	0.076	0.651	0.440	0.195	0.209	0.599	0.738	1.148	0.400	0.130	0.145	0.437	nan	0.243	0.365	1.097	1.116	0.194	0.283	3.301	3.405	0.357	nan	0.578	0.286	0.098	0.260	1.285	0.185	5.155	0.172	0.406	0.070	0.058	0.140
7877	chr8	110422729	110429969	+	0	NA	intron (NM_177531, intron 21 of 77)	intron (NM_177531, intron 21 of 77)	51643	NM_177531	93035	Hs.170128	NM_177531	ENSG00000205038	PKHD1L1	PKHDL1	polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1	protein-coding	nan	nan	1.107	0.364	0.624	0.288	0.288	0.130	0.133	0.195	0.193	0.563	1.439	0.045	0.062	0.306	0.254	0.089	0.198	4.556	4.552	nan	0.439	0.559	nan	2.014	nan	4.637	5.217	2.400	1.777	0.077	0.273	4.996	7.761	0.335	0.477	2.110	0.892	0.905	0.313	1.488	0.077	0.288	0.563	0.175	2.394	0.014	0.309
5036	chr20	61272869	61300457	+	0	NA	intron (NM_016354, intron 1 of 11)	intron (NM_016354, intron 1 of 11)	11310	NR_024470	100127888	Hs.671273	NR_024470	ENSG00000232803	SLCO4A1-AS1	-	SLCO4A1 antisense RNA 1	ncRNA	1.315	1.853	0.863	0.280	0.484	0.173	0.383	0.272	0.070	0.206	0.111	0.239	1.482	0.427	0.101	3.344	nan	1.511	1.540	1.104	1.039	0.472	0.106	0.601	0.571	0.552	1.031	0.152	0.166	1.424	1.642	1.399	2.344	0.233	0.313	0.466	0.646	0.724	0.591	1.034	0.540	0.034	0.040	0.383	0.239	0.389	0.941	0.801	0.197
6743	chr6	36963244	36975968	+	0	NA	Intergenic	MLT2F|LTR|ERVL	-3817	NM_173558	221472	Hs.509664	NM_173558	ENSG00000146192	FGD2	ZFYVE4	FYVE, RhoGEF and PH domain containing 2	protein-coding	nan	1.390	nan	0.291	0.449	0.195	0.687	0.236	0.138	0.259	0.205	0.471	5.280	0.111	0.075	0.843	0.993	0.268	nan	nan	2.515	0.988	0.300	0.414	0.490	0.818	1.242	5.025	3.769	0.662	0.621	0.581	0.905	0.335	0.292	0.342	0.474	1.419	0.936	7.228	3.247	0.060	0.144	0.687	0.471	0.365	0.462	0.311	0.067
259	chr1	41931703	41954049	+	0	NA	Intergenic	Intergenic	7478	NM_001302269	1907	Hs.1407	NM_001956	ENSG00000127129	EDN2	ET-2|ET2|PPET2	endothelin 2	protein-coding	18.984	0.976	nan	0.309	0.427	0.241	0.653	0.638	0.238	0.375	0.220	0.605	4.262	0.121	0.080	0.362	0.744	0.232	0.510	2.000	2.297	0.981	0.308	0.623	0.688	1.431	nan	nan	6.508	1.901	1.811	0.674	nan	0.782	0.734	0.378	0.625	1.497	1.008	4.505	0.258	0.302	0.075	0.653	0.605	0.952	0.168	0.258	0.141
5290	chr22	43828381	43846755	+	0	NA	intron (NM_001044370, intron 3 of 6)	intron (NM_001044370, intron 3 of 6)	29548	NM_001044370	758	Hs.159538	NM_001044370	ENSG00000186732	MPPED1	239AB|C22orf1|FAM1A	metallophosphoesterase domain containing 1	protein-coding	0.850	nan	0.441	1.137	3.425	1.642	0.664	0.053	0.062	0.264	0.113	3.369	2.124	0.094	0.123	0.278	0.235	0.143	0.166	2.380	2.454	1.539	0.508	0.101	0.092	0.585	nan	2.505	2.915	nan	1.371	0.213	0.261	1.371	1.199	0.176	0.223	1.569	0.751	1.928	0.923	0.265	0.060	0.664	3.369	0.310	0.138	0.043	0.038
6194	chr5	16720035	16743535	+	0	NA	intron (NM_012334, intron 19 of 40)	intron (NM_012334, intron 19 of 40)	-114618	NM_001034850	54463	Hs.481704	NM_019000	ENSG00000154153	FAM134B	JK-1|JK1	family with sequence similarity 134 member B	protein-coding	nan	nan	nan	2.136	1.739	0.996	0.547	0.497	0.153	1.657	1.244	1.965	nan	0.074	0.104	3.324	4.048	4.863	5.548	0.834	0.771	5.329	2.382	1.360	1.467	nan	2.677	3.556	2.889	1.315	1.375	2.628	3.389	4.106	5.419	0.420	nan	1.267	1.159	0.558	0.538	0.921	0.487	0.547	1.965	0.107	0.264	0.951	0.231
6518	chr5	154235993	154239660	+	0	NA	promoter-TSS (NM_001301083)	promoter-TSS (NM_001301083)	17	NM_001301083	9337	Hs.26703	NM_004779	ENSG00000155508	CNOT8	CAF1|CALIF|Caf1b|POP2|hCAF1	CCR4-NOT transcription complex subunit 8	protein-coding	7.517	nan	4.557	5.977	9.893	5.829	3.666	3.487	0.331	2.508	1.649	8.296	19.194	8.491	0.347	7.188	6.938	8.111	11.300	12.470	10.270	9.405	5.006	11.689	12.306	6.587	8.399	9.728	14.935	10.771	12.412	6.321	8.665	12.177	11.118	8.211	7.679	3.514	2.348	4.160	7.254	2.292	3.441	3.666	8.296	1.531	4.426	4.405	3.841
7752	chr8	74080255	74099417	+	0	NA	Intergenic	Intergenic	81901	NM_001243237	100130301	Hs.202296	NM_001243237	ENSG00000274443	C8orf89	-	chromosome 8 open reading frame 89	protein-coding	1.665	1.087	2.509	0.372	1.337	0.668	0.283	0.152	0.134	0.566	0.298	2.005	1.935	0.130	0.083	0.327	0.445	1.246	1.414	1.977	1.993	2.738	0.977	0.412	0.390	2.440	3.172	0.317	0.395	0.562	0.365	0.399	0.500	3.238	3.629	0.477	1.310	3.634	2.116	0.636	0.221	0.947	0.102	0.283	2.005	0.045	1.164	0.118	0.328
1836	chr12	12390234	12399878	+	0	NA	intron (NM_002336, intron 2 of 22)	intron (NM_002336, intron 2 of 22)	24755	NM_002336	4040	Hs.584775	NM_002336	ENSG00000070018	LRP6	ADCAD2|STHAG7	LDL receptor related protein 6	protein-coding	1.114	0.634	1.183	0.455	0.274	0.099	0.198	0.069	0.083	0.167	0.181	0.246	0.310	0.212	0.138	1.390	1.430	9.105	6.039	nan	1.152	0.548	0.319	0.653	0.708	1.030	1.226	0.548	0.493	0.368	0.196	0.692	1.088	0.144	0.167	0.341	0.929	0.223	0.226	0.044	0.147	0.009	0.082	0.198	0.246	0.010	0.021	0.298	0.074
6610	chr6	10380240	10390169	+	0	NA	Intergenic	CpG	-27347	NR_033910	100130275	Hs.661431	NR_033910		TFAP2A-AS1	-	TFAP2A antisense RNA 1	ncRNA	0.921	nan	0.938	0.976	1.400	0.612	0.293	0.085	0.048	0.887	0.456	0.835	0.358	0.054	0.099	4.284	4.160	8.094	7.382	0.555	0.452	3.213	0.833	1.882	1.976	0.154	0.376	0.112	0.114	0.443	0.203	1.739	3.803	5.412	5.926	0.242	0.421	0.573	0.566	0.090	0.233	0.988	1.876	0.293	0.835	0.020	0.366	2.509	0.049
3976	chr19	13179260	13207389	+	0	NA	intron (NM_002501, intron 8 of 9)	intron (NM_002501, intron 8 of 9)	20650	NM_005583	4066	Hs.46446	NM_005583	ENSG00000104903	LYL1	bHLHa18	LYL1, basic helix-loop-helix family member	protein-coding	2.396	0.714	4.315	0.256	0.815	0.460	1.430	0.300	0.120	0.272	0.158	0.475	0.786	0.499	0.051	1.075	1.806	0.418	0.846	1.850	2.047	2.362	0.655	0.431	0.566	1.340	1.938	1.133	1.124	1.144	0.865	0.418	0.420	0.906	0.997	0.708	1.340	1.380	0.759	1.950	0.233	0.303	0.245	1.430	0.475	0.772	0.461	0.084	0.260
5160	chr21	45540509	45558041	+	0	NA	intron (NM_005049, intron 20 of 20)	intron (NM_005049, intron 20 of 20)	-4219	NR_135220	8209	Hs.413482	NM_004649	ENSG00000160221	C21orf33	ES1|GT335|HES1|KNPH|KNPI	chromosome 21 open reading frame 33	protein-coding	nan	0.894	4.466	1.010	0.833	0.347	0.913	0.353	0.161	0.366	0.183	0.631	2.350	0.732	0.078	1.285	1.453	0.847	1.462	1.424	1.341	nan	0.423	1.800	1.891	1.088	nan	1.686	2.430	1.856	2.049	0.868	1.369	0.979	0.943	0.755	1.376	1.484	0.770	0.515	0.717	0.235	0.314	0.913	0.631	0.474	0.935	0.317	0.541
6731	chr6	34621012	34633085	+	0	NA	intron (NM_024294, intron 1 of 4)	intron (NM_024294, intron 1 of 4)	-36883	NR_134625	101929243	Hs.643498	NR_134625	ENSG00000272288	LOC101929243	-	uncharacterized LOC101929243	ncRNA	nan	2.321	nan	3.823	2.391	1.115	0.859	2.521	0.598	0.849	0.497	2.103	2.275	0.744	0.154	1.922	1.921	2.864	nan	nan	1.494	7.964	3.168	6.261	6.555	1.733	2.313	7.681	11.690	0.751	0.347	1.384	1.938	2.050	4.108	1.034	2.177	1.959	1.070	1.871	0.722	0.226	0.402	0.859	2.103	0.160	0.925	2.419	0.564
8138	chr9	41953067	41958099	+	0	NA	promoter-TSS (NR_126046)	promoter-TSS (NR_126046)	-406	NR_126045	389741	Hs.380240	NM_203448	ENSG00000278175	GLIDR	LINC01172|TCONS_00015562	glioblastoma down-regulated RNA	ncRNA	3.353	5.243	4.063	4.609	4.067	1.913	3.968	0.965	0.122	2.046	1.045	3.830	5.385	2.448	0.150	3.901	3.928	4.367	5.537	7.955	6.971	7.325	4.298	11.769	12.119	6.275	7.190	4.015	5.863	6.323	6.246	4.599	6.143	6.876	6.537	4.629	4.975	7.528	4.628	1.799	1.009	2.519	1.408	3.968	3.830	1.427	1.814	1.728	2.177
2929	chr15	68968410	68998565	+	0	NA	intron (NM_001190456, intron 2 of 11)	AluYf4|SINE|Alu	49645	NM_001324015	10391	Hs.551213	NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding	1.273	0.885	nan	0.169	0.523	0.274	0.609	0.113	0.053	0.223	0.200	0.663	2.045	0.029	0.067	0.526	0.774	0.240	0.382	0.771	0.632	nan	0.404	0.177	0.204	0.592	0.875	0.510	0.817	2.871	2.624	0.285	0.492	0.218	0.312	1.458	4.668	0.413	0.375	0.185	1.296	0.028	0.351	0.609	0.663	0.335	0.067	0.085	2.195
5681	chr3	174155699	174164299	+	0	NA	Intergenic	Intergenic	-417112	NM_207015	254827	Hs.565848	NM_207015	ENSG00000177694	NAALADL2	-	N-acetylated alpha-linked acidic dipeptidase like 2	protein-coding	3.289	4.929	2.060	2.764	2.940	1.438	2.027	5.685	0.277	3.386	2.389	1.602	3.629	4.381	0.121	1.357	1.666	2.282	3.384	3.634	3.797	7.001	3.032	4.639	4.628	5.590	6.476	2.597	3.779	3.214	3.600	0.776	1.464	11.150	9.829	1.719	1.958	2.098	1.256	2.035	0.689	2.459	1.330	2.027	1.602	0.520	1.211	0.254	0.620
7071	chr6	158134197	158142162	+	0	NA	Intergenic	AluJr|SINE|Alu	-106024	NM_016224	51429	Hs.191213	NM_016224	ENSG00000130340	SNX9	SDP1|SH3PX1|SH3PXD3A|WISP	sorting nexin 9	protein-coding	nan	0.557	0.703	0.153	0.427	0.157	8.840	1.994	0.223	0.060	0.074	0.465	0.559	0.095	0.091	0.473	0.490	0.279	0.445	1.949	nan	1.454	0.391	0.335	0.376	0.127	0.315	0.180	0.270	0.471	0.357	0.138	0.296	0.185	0.272	0.431	nan	0.441	0.474	1.035	2.634	0.036	0.147	8.840	0.465	0.269	0.089	0.098	0.123
2738	chr14	91816521	91872794	+	0	NA	intron (NM_001080414, intron 3 of 29)	intron (NM_001080414, intron 3 of 29)	39531	NM_001080414	440193	Hs.525536	NM_001080414	ENSG00000015133	CCDC88C	DAPLE|HKRP2|KIAA1509|SCA40	coiled-coil domain containing 88C	protein-coding	1.618	1.413	nan	1.864	0.828	0.406	0.852	0.149	0.119	1.295	0.816	1.972	1.749	0.094	0.101	0.549	0.934	0.394	0.744	5.365	4.917	1.438	0.314	1.034	1.127	1.305	2.012	5.364	7.135	5.658	5.354	0.435	0.516	1.178	1.249	0.814	1.766	nan	1.419	3.026	2.107	0.278	1.884	0.852	1.972	0.301	0.484	0.183	0.761
7447	chr7	115337269	115374997	+	0	NA	Intergenic	Intergenic	252234	NM_001244583	22797	Hs.125962	NM_012252	ENSG00000105967	TFEC	TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L	transcription factor EC	protein-coding	nan	0.720	0.885	0.484	0.529	0.242	0.906	0.197	0.123	0.433	0.441	0.638	0.947	0.095	0.171	0.436	0.316	0.517	0.622	0.301	0.413	0.186	0.113	0.301	0.265	0.641	0.754	0.907	1.469	0.453	0.213	0.263	0.556	6.987	9.532	0.514	1.250	1.033	0.598	0.050	0.532	2.815	0.238	0.906	0.638	0.057	0.430	0.168	0.140
5629	chr3	164032449	164052460	+	0	NA	Intergenic	L1MC1|LINE|L1	-153110	NR_031665	100302148		NR_031665	ENSG00000221251	MIR1263	MIRN1263|hsa-mir-1263	microRNA 1263	ncRNA	1.043	1.072	0.783	0.228	0.332	0.145	0.097	0.216	0.088	0.201	0.150	0.181	0.201	0.033	0.081	0.319	0.219	0.151	0.210	0.328	0.479	0.268	0.136	0.246	0.253	3.589	3.981	nan	0.333	nan	0.296	0.163	0.224	0.098	0.126	0.483	1.176	0.494	0.350	0.022	0.098	0.014	0.024	0.097	0.181	0.020	0.020	0.042	0.218
5179	chr22	18110079	18123525	+	0	NA	Intergenic	L2b|LINE|L2	-4548	NM_001270735	23786	Hs.631672	NM_015367	ENSG00000099968	BCL2L13	BCL-RAMBO|Bcl2-L-13|MIL1	BCL2 like 13	protein-coding	3.106	nan	2.133	1.505	2.408	1.336	1.843	2.133	0.269	1.209	0.554	2.184	3.756	1.802	0.087	2.734	2.486	3.919	7.585	2.513	2.482	3.491	1.767	9.978	10.571	3.260	4.124	3.097	4.686	4.580	4.199	1.521	2.480	3.286	5.094	2.626	2.877	3.355	2.088	0.802	1.191	0.406	0.773	1.843	2.184	0.837	1.501	0.641	0.865
8399	chrX	107973496	107984014	+	0	NA	exon (NM_003604, exon 1 of 1)	exon (NM_003604, exon 1 of 1)	852	NM_003604	8471	Hs.407141	NM_003604	ENSG00000133124	IRS4	IRS-4|PY160	insulin receptor substrate 4	protein-coding	nan	nan	nan	0.233	0.313	0.137	0.062	0.036	0.061	0.208	0.180	0.045	0.500	0.145	0.171	1.055	1.005	0.438	0.472	0.120	0.132	0.805	0.196	0.424	0.434	0.097	0.193	0.376	0.578	0.960	1.060	0.060	0.195	0.068	0.105	0.084	0.187	0.103	0.150	0.385	5.329	0.036	0.015	0.062	0.045		0.010	0.028	0.082
5447	chr3	107562934	107592117	+	0	NA	intron (NR_024276, intron 3 of 7)	AluJr|SINE|Alu	19390	NR_024276	151658	Hs.159043	NR_015414	ENSG00000241469	LINC00635	-	long intergenic non-protein coding RNA 635	ncRNA	nan	nan	0.738	0.123	0.492	0.220	0.374	0.190	0.132	0.375	0.230	0.410	0.200	0.045	0.070	0.321	0.178	0.316	0.457	0.483	0.551	7.219	3.269	0.254	0.275	0.238	0.476	0.253	0.296	0.671	0.303	0.187	0.276	0.400	0.335	0.415	0.836	0.693	0.577	0.611	0.085	0.069	0.133	0.374	0.410	0.073	0.063	0.248	0.221
3087	chr16	21565542	21572210	+	0	NA	Intergenic	AluSz|SINE|Alu	-37111	NR_002594	387254	Hs.448808	NR_002594		SLC7A5P2	IMAA|MMAA	solute carrier family 7 member 5 pseudogene 2	pseudo	2.356	1.182	nan	0.674	2.708	1.732	0.990	0.167	0.120	1.623	0.521	0.883	1.660	0.260	0.194	0.538	0.320	0.537	0.768	1.814	2.217	nan	2.596	1.066	1.121	0.629	1.126	1.770	2.035	0.927	0.544	0.382	0.333	0.616	1.372	0.571	0.920	6.352	3.196	0.215	0.067	0.087	0.429	0.990	0.883	0.454	1.690	0.059	0.102
442	chr1	109921559	109940564	+	0	NA	intron (NM_002959, intron 1 of 19)	AluJr|SINE|Alu	4918	NM_001205228	6272	Hs.485195	NM_002959	ENSG00000134243	SORT1	Gp95|LDLCQ6|NT3|NTR3	sortilin 1	protein-coding	1.571	nan	nan	0.513	0.550	0.253	0.322	1.095	0.153	0.293	0.160	0.485	0.937	0.333	0.169	0.631	0.715	0.807	1.358	1.058	nan	0.732	0.302	0.979	0.920	2.909	3.553	nan	nan	0.642	0.389	0.833	1.278	0.312	0.320	0.689	nan	0.791	0.716	0.230	0.324	0.030	0.250	0.322	0.485	0.146	0.255	0.305	0.240
6208	chr5	22344751	22356186	+	0	NA	intron (NM_004061, intron 3 of 14)	intron (NM_004061, intron 3 of 14)	-136559	NM_001317228	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding	0.724	1.140	1.856	0.288	0.115	0.070	0.202	0.202	0.294	0.219	0.261	0.210	0.388	0.037	0.084	0.413	0.230	0.244	0.375	0.521	0.741	0.128	0.089	0.117	0.106	nan	4.693	0.325	0.304	0.884	0.528	0.112	0.156	0.479	0.515	0.244	0.518	nan	0.710	0.044	0.132	0.277	0.140	0.202	0.210	0.094	0.142	0.017	0.054
4044	chr19	38418332	38459930	+	0	NA	intron (NM_015073, intron 1 of 21)	AluJb|SINE|Alu	41270	NM_015073	23094	Hs.655502	NM_015073	ENSG00000105738	SIPA1L3	CTRCT45|SPAL3|SPAR3	signal induced proliferation associated 1 like 3	protein-coding	1.285	1.155	4.185	1.478	0.553	0.258	0.557	0.207	0.123	0.402	0.270	0.574	2.554	0.643	0.130	0.683	0.927	2.418	4.964	0.877	0.901	2.067	0.581	2.105	2.188	0.908	1.499	1.687	1.938	nan	0.822	0.640	0.696	0.680	0.660	0.447	0.997	1.253	0.831	1.090	0.960	0.140	0.485	0.557	0.574	0.272	0.276	0.680	0.278
5524	chr3	127253762	127267271	+	0	NA	Intergenic	Intergenic	-3893	NR_125397	101927149	Hs.407798	NR_125397	ENSG00000239921	LINC01471	-	long intergenic non-protein coding RNA 1471	ncRNA	1.772	nan	1.760	1.303	1.820	1.065	1.594	0.178	0.060	3.586	1.220	2.787	3.257	0.176	0.053	0.451	0.667	0.329	0.387	4.941	5.321	2.407	0.670	0.554	0.597	0.906	nan	1.041	1.936	2.855	3.404	0.892	0.931	0.871	0.545	2.759	4.256	1.697	0.891	1.496	1.313	0.156	0.223	1.594	2.787	0.332	0.707	0.191	1.451
6771	chr6	43056852	43096465	+	0	NA	intron (NM_001270398, intron 1 of 19)	L1MC5|LINE|L1	32106	NM_001270398	5754	Hs.90572	NM_002821	ENSG00000112655	PTK7	CCK-4|CCK4	protein tyrosine kinase 7 (inactive)	protein-coding	1.606	1.097	2.812	0.352	0.612	0.401	1.362	0.518	0.181	0.439	0.212	0.614	1.518	0.205	0.125	1.814	2.656	1.055	1.631	0.747	0.765	2.572	0.831	1.130	1.086	1.372	1.856	1.287	nan	0.866	0.620	1.345	1.594	3.525	3.590	0.695	1.407	1.236	0.768	1.695	1.298	1.154	1.281	1.362	0.614	0.182	0.125	1.611	0.353
6893	chr6	107770866	107786015	+	0	NA	intron (NM_020381, intron 1 of 7)	L1MD1|LINE|L1	2339	NM_020381	57107	Hs.745008	NM_020381	ENSG00000164494	PDSS2	C6orf210|COQ10D3|DLP1|bA59I9.3|hDLP1	decaprenyl diphosphate synthase subunit 2	protein-coding	1.461	nan	nan	2.154	1.005	0.561	0.814	0.386	0.116	0.260	0.181	0.854	2.012	0.803	0.138	14.275	16.713	1.227	1.624	1.447	nan	2.957	0.853	1.893	1.828	0.836	1.139	1.290	1.635	nan	0.944	0.874	1.576	1.204	0.988	0.842	1.357	0.731	0.561	0.768	0.853	0.265	0.303	0.814	0.854	0.212	0.804	0.523	0.391
7375	chr7	92383421	92400620	+	0	NA	intron (NM_001145306, intron 3 of 7)	AluSx3|SINE|Alu	71211	NM_001259	1021	Hs.119882	NM_001259	ENSG00000105810	CDK6	MCPH12|PLSTIRE	cyclin dependent kinase 6	protein-coding	nan	1.329	nan	0.318	1.078	0.581	1.079	0.891	0.178	0.584	0.423	0.167	0.577	1.162	0.216	1.116	1.634	0.324	0.673	0.244	0.327	1.280	0.427	1.396	1.379	3.562	3.956	0.961	1.012	5.501	5.062	0.475	0.684	1.717	3.209	0.639	nan	2.753	1.790	0.036	0.212	0.507	0.529	1.079	0.167	0.261	0.077	0.329	0.753
5440	chr3	100118218	100123403	+	0	NA	promoter-TSS (NM_014820)	promoter-TSS (NM_014820)	-568	NM_014820	9868	Hs.227253	NM_014820	ENSG00000154174	TOMM70	TOMM70A|Tom70	translocase of outer mitochondrial membrane 70	protein-coding	nan	nan	3.298	3.845	5.285	3.156	4.002	3.377	0.214	4.001	2.390	6.822	8.406	3.100	0.160	4.231	5.305	3.254	5.797	7.878	5.708	10.631	4.064	14.300	15.672	6.256	7.156	5.238	6.950	15.048	17.168	3.205	6.910	4.826	5.244	7.655	11.489	4.663	2.282	3.434	5.423	0.732	3.108	4.002	6.822	2.126	2.759	5.009	5.500
4186	chr2	3604829	3625778	+	0	NA	Intergenic	AluSx|SINE|Alu	-7550	NM_001011	6201	Hs.534346	NM_001011	ENSG00000171863	RPS7	DBA8|S7	ribosomal protein S7	protein-coding	2.309	1.341	1.793	1.686	1.802	0.886	1.536	0.690	0.123	0.878	0.453	2.173	3.554	1.741	0.156	1.871	1.723	2.369	3.661	3.156	2.861	3.476	1.624	2.405	2.372	1.885	2.752	5.100	6.394	3.232	3.771	1.395	1.974	1.079	1.196	3.387	4.492	2.030	1.144	0.705	2.903	0.164	0.585	1.536	2.173	0.859	1.580	0.311	1.457
8227	chr9	104383455	104402596	+	0	NA	intron (NM_133445, intron 3 of 8)	MIRb|SINE|MIR	-35742	NM_147180	5535	Hs.151167	NM_147180	ENSG00000188386	PPP3R2	PPP3RL	protein phosphatase 3 regulatory subunit B, beta	protein-coding	0.663	0.736	1.192	0.291	0.332	0.231	0.166	0.102	0.092	0.130	0.087	0.105	0.381	0.011	0.082	0.196	0.169	0.163	0.266	0.332	0.431	0.465	0.153	0.107	0.112	0.433	0.583	0.632	nan	0.580	0.389	0.092	0.112	1.603	3.194	0.187	0.343	nan	0.597	0.056	0.065	0.607	0.091	0.166	0.105	0.043	0.069	0.047	0.064
5642	chr3	168172583	168179053	+	0	NA	intron (NR_021485, intron 3 of 15)	intron (NR_021485, intron 3 of 15)	-93824	NR_030294	693136		NR_030294	ENSG00000207717	MIR551B	MIRN551B|mir-551b	microRNA 551b	ncRNA	1.069	1.026	0.891	0.125	0.235	0.132	0.397	0.766	0.173	0.459	0.257	0.037	0.194	0.085	0.083	0.262	0.238	0.164	0.246	0.417	0.603	1.289	0.549	0.282	0.259	8.436	7.997	nan	0.558	nan	0.358	0.152	0.275	2.494	6.201	0.441	0.938	1.193	0.507	0.009	0.291	0.794	0.218	0.397	0.037	0.136	0.172	0.046	0.194
8408	chrX	124322717	124340651	+	0	NA	Intergenic	Intergenic	-122285	NM_001195272	100129520	Hs.728728	NM_001195272	ENSG00000282815	TEX13C	-	TEX13 family member C	protein-coding	1.394	nan	3.362	0.268	0.211	0.116	0.136	0.038	0.036	0.852	0.612	0.039	0.949	0.048	0.038	0.263	0.371	0.322	0.270	0.125	0.221	3.723	1.342	0.287	0.253	3.107	3.721	0.477	0.527	0.603	0.638	0.084	0.077	3.026	2.422	0.920	2.610	0.714	0.435	0.025	0.020	0.703	0.203	0.136	0.039		0.034	0.016	1.473
3243	chr17	2785621	2816140	+	0	NA	intron (NM_001330058, intron 2 of 24)	AluSz|SINE|Alu	68309	NR_110818	101927911	Hs.626373	NR_110818	ENSG00000262884	LOC101927911	-	uncharacterized LOC101927911	ncRNA	1.782	0.921	1.514	0.433	0.591	0.294	0.687	0.041	0.115	0.262	0.116	2.675	0.415	0.068	0.078	0.515	0.628	0.235	0.461	1.791	2.406	2.863	0.670	1.906	1.988	1.124	1.533	2.583	3.436	2.889	2.843	0.447	0.423	0.364	0.400	1.366	2.835	1.266	0.692	0.979	1.152	0.086	0.450	0.687	2.675	1.121	0.905	0.564	0.655
7702	chr8	61986992	61993733	+	0	NA	Intergenic	Intergenic	-110055	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA	2.937	1.072	5.097	3.166	2.960	1.903	2.520	0.067	0.119	3.046	1.116	1.368	3.211	0.048	0.080	0.418	0.363	0.245	0.251	2.627	2.156	9.666	2.541	0.096	0.058	1.834	nan	4.063	2.773	nan	2.310	0.298	0.326	9.475	10.121	0.531	1.402	5.720	2.810	0.248	1.224	2.913	0.128	2.520	1.368	14.794	4.984	0.073	0.405
7633	chr8	30577563	30587502	+	0	NA	intron (NM_000637, intron 1 of 12)	MER4C|LTR|ERV1	2954	NM_001195104	2936	Hs.271510	NM_000637	ENSG00000104687	GSR	HEL-75|HEL-S-122m	glutathione-disulfide reductase	protein-coding	1.929	1.446	nan	0.906	1.232	0.742	1.418	0.950	0.292	0.727	0.390	1.593	4.369	1.349	0.169	2.738	2.918	2.913	5.657	3.985	3.245	3.336	1.148	11.892	12.386	1.432	1.930	1.767	2.870	2.043	1.931	0.797	1.384	2.188	3.099	3.047	2.590	1.920	1.212	1.221	0.894	0.385	0.386	1.418	1.593	0.235	1.248	0.199	0.867
7102	chr6	168770303	168795137	+	0	NA	Intergenic	Intergenic	-59111	NM_022138	64094	Hs.487200	NM_022138	ENSG00000112562	SMOC2	DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1	SPARC related modular calcium binding 2	protein-coding	0.649	nan	2.300	2.952	0.568	0.297	0.556	0.054	0.013	0.529	0.261	7.533	1.554	0.035	0.078	0.269	0.233	0.214	0.331	7.554	7.950	3.265	1.458	0.144	0.171	0.059	0.108	4.713	4.924	nan	0.178	0.236	0.327	0.638	0.339	0.107	0.117	1.452	0.794	0.137	0.308	0.067	0.029	0.556	7.533	0.047	0.929	0.061	0.035
7780	chr8	89309366	89316286	+	0	NA	intron (NM_005941, intron 1 of 9)	Tigger7|DNA|TcMar-Tigger	26891	NM_005941	4325	Hs.492187	NM_005941	ENSG00000156103	MMP16	C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP	matrix metallopeptidase 16	protein-coding	1.159	nan	nan	0.293	0.529	0.163	0.129	0.571	0.014	0.067	0.012	0.103	0.410	0.048	0.099	3.321	5.028	6.610	7.474	0.365	0.341	0.615	0.191	12.829	12.689	1.000	1.416	nan	1.001	0.393	0.169	5.428	6.086	0.337	0.398	0.152	0.365	0.434	0.395	0.210	0.189	0.014	0.002	0.129	0.103	0.014	0.098	2.429	0.124
6184	chr5	14282996	14303788	+	0	NA	intron (NM_007118, intron 6 of 56)	intron (NM_007118, intron 6 of 56)	149581	NM_007118	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding	nan	nan	nan	0.381	0.319	0.185	0.154	0.895	0.219	0.939	0.442	0.254	nan	0.177	0.162	0.389	0.435	0.331	0.521	0.937	1.007	0.318	0.147	0.216	0.206	nan	3.816	0.565	0.695	1.253	1.367	0.237	0.393	0.121	0.196	1.440	nan	2.810	1.555	0.054	0.192	0.032	0.103	0.154	0.254	0.251	0.150	0.047	1.911
249	chr1	40721977	40725633	+	0	NA	promoter-TSS (NM_005857)	promoter-TSS (NM_005857)	83	NM_005857	10269	Hs.132642	NM_005857	ENSG00000084073	ZMPSTE24	FACE-1|FACE1|HGPS|PRO1|STE24|Ste24p	zinc metallopeptidase STE24	protein-coding	34.669	3.032	nan	20.708	3.962	1.563	89.235	3.915	0.528	2.575	1.350	6.634	6.818	5.034	0.194	5.497	4.911	6.387	9.409	9.573	9.779	6.499	2.609	12.867	14.153	4.948	nan	nan	18.317	8.555	7.472	8.675	nan	2.778	3.059	6.444	6.769	8.109	4.158	2.537	1.851	0.396	22.209	89.235	6.634	1.364	1.332	3.276	1.932
1612	chr11	105944886	105953232	+	0	NA	promoter-TSS (NM_152433)	promoter-TSS (NM_152433)	-594	NM_001330359	143879	Hs.101949	NM_152433	ENSG00000182359	KBTBD3	BKLHD3	kelch repeat and BTB domain containing 3	protein-coding	1.947	2.003	1.855	2.670	2.067	0.921	1.334	0.367	0.057	1.879	0.961	2.342	4.293	1.509	0.124	19.419	22.327	2.786	3.833	5.310	5.497	4.915	2.267	9.279	10.211	3.546	4.292	4.260	6.908	5.701	5.797	5.719	8.300	3.293	3.182	3.270	3.421	2.574	1.419	1.590	1.552	0.488	1.460	1.334	2.342	0.301	1.502	3.631	0.741
8096	chr9	26797927	26804462	+	0	NA	Intergenic	Intergenic	91632	NM_001167575	79886	Hs.178357	NM_024828	ENSG00000120159	CAAP1	C9orf82|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.628	3.283	nan	0.483	4.159	2.305	0.155	0.124	0.024	1.061	0.993	3.952	0.402	0.016	0.106	0.089	0.066	0.283	0.527	2.034	1.788	9.741	2.726	0.167	0.150	0.232	0.400	1.452	0.646	0.284	0.150	0.099	0.204	0.473	0.364	0.230	0.315	5.367	2.583	0.093	0.122	0.029	0.390	0.155	3.952		0.046	0.046	0.074
1748	chr11	133901874	133921911	+	0	NA	TTS (NR_027276)	TTS (NR_027276)	9725	NR_027276	100128239	Hs.423734	NR_027276	ENSG00000204241	LOC100128239	-	uncharacterized LOC100128239	ncRNA	1.286	nan	1.589	0.498	1.300	0.687	1.529	0.030	0.056	1.556	0.866	1.121	nan	0.744	0.099	1.231	2.324	0.389	0.635	1.610	1.593	2.557	0.684	0.116	0.095	1.754	2.265	2.226	3.289	2.131	1.937	3.063	4.399	1.369	1.035	1.017	2.047	2.675	1.532	2.007	2.800	0.180	0.318	1.529	1.121	0.443	3.214	1.326	0.733
858	chr1	213820706	213855044	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-260217	NR_046189	100861504	Hs.742586	NR_046189		LINC00538	PROX1UT|Yiya	long intergenic non-protein coding RNA 538	ncRNA	1.073	1.282	1.203	3.103	1.104	0.675	0.254	0.100	0.142	0.963	0.554	3.085	nan	0.042	0.100	0.437	0.336	0.367	0.468	2.110	2.710	nan	0.727	0.788	0.826	0.289	nan	4.979	3.878	0.561	0.367	0.118	0.175	0.379	0.396	0.393	0.926	1.429	0.807	0.076	0.635	0.089	0.081	0.254	3.085	0.051	0.314	0.040	0.227
2127	chr12	106838209	106842232	+	0	NA	intron (NM_001160708, intron 19 of 27)	(A)n|Simple_repeat|Simple_repeat	88360	NM_001160708	55703	Hs.62696	NM_018082	ENSG00000013503	POLR3B	C128|HLD8|INMAP|RPC2	RNA polymerase III subunit B	protein-coding	0.916	0.875	nan	2.850	8.267	3.918	0.544	0.112	0.079	2.137	0.723	2.174	0.936	0.168	0.131	0.325	0.360	0.438	0.572	3.917	2.623	13.283	12.955	0.537	0.402	0.515	0.744	0.428	0.823	0.331	0.133	2.146	3.204	3.125	3.801	0.293	0.534	5.982	3.049	0.068	0.883	0.424	0.468	0.544	2.174		3.226	2.206	0.090
5131	chr21	40980590	41016455	+	0	NA	intron (NM_001278650, intron 1 of 2)	L1MB3|LINE|L1	13655	NM_001278650	10317	Hs.733638	NM_006057	ENSG00000183778	B3GALT5	B3GalT-V|B3GalTx|B3T5|GLCT5|beta-1,3-GalTase 5|beta-3-Gx-T5|beta3Gal-T5	beta-1,3-galactosyltransferase 5	protein-coding	nan	0.688	1.067	0.684	0.762	0.354	0.225	0.092	0.103	0.218	0.101	0.786	13.095	0.045	0.073	1.494	1.644	0.175	0.333	0.507	0.614	nan	0.440	0.225	0.246	0.145	nan	0.931	1.194	0.331	0.131	1.642	1.927	0.825	0.875	0.096	0.183	0.975	0.752	0.278	0.126	0.200	0.949	0.225	0.786	0.019	0.038	2.450	0.051
1479	chr11	66619208	66637306	+	0	NA	TTS (NM_024036)	TTS (NM_024036)	3381	NM_024036	78999	Hs.209979	NM_024036	ENSG00000173621	LRFN4	FIGLER6|SALM3|SALM3.	leucine rich repeat and fibronectin type III domain containing 4	protein-coding	nan	1.346	1.248	0.841	0.753	0.398	0.885	0.429	0.148	0.596	0.326	2.290	1.773	1.229	0.088	3.641	4.938	1.062	1.598	4.487	4.058	1.597	0.562	1.898	1.906	1.060	1.569	2.978	3.587	1.403	1.599	2.097	4.072	1.493	1.184	1.089	1.854	0.918	0.421	2.965	2.001	0.335	0.593	0.885	2.290	0.506	1.097	2.265	0.520
1359	chr11	30651115	30660996	+	0	NA	Intergenic	Intergenic	-48125	NM_001145399	744	Hs.289795	NM_001584	ENSG00000066382	MPPED2	239FB|C11orf8	metallophosphoesterase domain containing 2	protein-coding	0.668	0.922	nan	0.133	0.153	0.178	0.059	0.054	0.065	0.094	0.116	0.097	0.242	0.023	0.096	0.463	0.288	0.243	0.217	0.250	0.379	0.088	0.044	0.172	0.105	0.249	0.271	0.142	0.105	0.383	0.154	0.264	0.324	6.460	7.912	0.337	nan	0.273	0.447	0.124	1.447	2.430	0.603	0.059	0.097	0.038	0.020	0.050	0.113
8142	chr9	66454581	66467492	+	0	NA	intron (NR_121647, intron 2 of 4)	L1PREC2|LINE|L1	3747	NR_121647	103352539	Hs.351215	NR_121647	ENSG00000238113	LINC01410	-	long intergenic non-protein coding RNA 1410	ncRNA	3.622	5.878	3.370	2.232	2.729	1.169	1.267	0.499	0.388	1.214	1.003	3.471	2.691	5.145	0.476	3.956	4.379	1.283	1.955	4.189	4.723	8.987	2.539	5.656	5.983	3.040	3.961	3.096	3.959	4.117	2.965	3.230	3.978	3.570	3.965	1.682	1.984	4.321	3.659	1.484	0.435	0.684	0.856	1.267	3.471	0.585	1.744	0.838	0.459
7436	chr7	111800109	111821175	+	0	NA	intron (NM_014705, intron 1 of 51)	Tigger15a|DNA|TcMar-Tigger	35820	NM_014705	9732	Hs.654652	NM_014705	ENSG00000128512	DOCK4	-	dedicator of cytokinesis 4	protein-coding	nan	0.882	1.058	0.262	1.082	0.518	0.932	0.128	0.061	0.597	0.551	0.995	0.534	0.062	0.104	0.407	0.410	0.260	0.390	0.758	0.873	2.601	0.789	0.211	0.264	2.230	2.857	0.484	0.485	1.317	0.937	0.170	0.390	1.567	2.576	0.789	2.585	1.645	1.135	0.226	0.157	0.380	0.064	0.932	0.995	0.124	0.126	0.052	0.585
5344	chr3	24225586	24243373	+	0	NA	intron (NM_001252634, intron 5 of 11)	intron (NM_001252634, intron 5 of 11)	41664	NR_121667	101927854	Hs.570625	NR_121667		LOC101927854	-	uncharacterized LOC101927854	ncRNA	0.775	0.766	0.796	0.030	0.143	0.063	0.151	1.898	0.127	0.097	0.061	0.189	0.185	0.030	0.090	0.162	0.133	0.269	0.422	0.339	0.523	0.709	0.199	0.132	0.127	0.369	0.515	0.191	0.209	nan	0.688	0.107	0.190	0.168	0.173	1.650	5.503	0.395	0.419	0.078	0.151	0.021	0.177	0.151	0.189	0.027	0.029	0.039	1.163
8289	chr9	131416631	131421099	+	0	NA	exon (NM_052844, exon 1 of 9)	exon (NM_052844, exon 1 of 9)	264	NM_052844	89891	Hs.495240	NM_052844	ENSG00000119333	WDR34	DIC5|FAP133|SRTD11|bA216B9.3	WD repeat domain 34	protein-coding	nan	4.663	4.932	9.507	6.358	3.341	5.671	3.371	0.360	1.780	1.035	6.873	12.458	3.697	0.179	5.825	5.333	6.774	9.443	9.421	10.992	nan	6.034	8.560	8.865	3.377	3.616	10.146	15.911	9.466	8.697	9.333	10.866	9.395	11.224	7.613	4.519	3.548	2.048	8.919	2.884	2.416	3.185	5.671	6.873	1.175	3.965	2.348	1.317
971	chr1	245395987	245412657	+	0	NA	intron (NM_018012, intron 2 of 14)	intron (NM_018012, intron 2 of 14)	86035	NM_018012	55083	Hs.143134	NM_018012	ENSG00000162849	KIF26B	-	kinesin family member 26B	protein-coding	nan	2.424	nan	0.623	0.587	0.303	1.405	0.140	0.097	0.262	0.185	0.293	0.589	0.130	0.097	0.470	0.328	0.805	1.534	0.789	0.936	4.675	0.887	0.649	0.581	0.108	0.304	1.141	1.203	0.363	0.257	0.198	0.321	1.967	2.114	0.365	0.593	0.274	0.270	0.033	0.235	0.651	0.081	1.405	0.293	0.105	1.455	0.053	0.117
5605	chr3	150261698	150266845	+	0	NA	promoter-TSS (NM_001319046)	promoter-TSS (NM_001319046)	157	NM_014445	27230	Hs.518326	NM_014445	ENSG00000120742	SERP1	RAMP4	stress associated endoplasmic reticulum protein 1	protein-coding	nan	4.486	3.706	6.056	5.074	2.636	2.884	3.579	0.362	3.248	2.323	3.280	5.314	2.042	0.117	5.227	4.585	4.773	6.392	6.691	5.360	14.711	8.264	13.503	14.118	5.337	nan	7.216	9.994	9.889	10.337	5.645	10.059	3.563	4.405	7.197	7.164	3.614	2.055	2.738	2.697	0.425	2.476	2.884	3.280	1.606	2.503	2.494	1.921
6818	chr6	54710791	54730294	+	0	NA	intron (NM_001010872, intron 1 of 4)	intron (NM_001010872, intron 1 of 4)	8973	NM_001010872	222584	Hs.152423	NM_001010872	ENSG00000168143	FAM83B	C6orf143	family with sequence similarity 83 member B	protein-coding	1.049	1.099	nan	0.064	0.414	0.362	0.348	0.111	0.090	0.145	0.127	0.074	0.238	0.061	0.113	0.423	0.325	1.013	1.408	0.149	0.217	0.091	0.071	0.781	0.762	0.403	0.577	0.748	0.938	0.375	0.188	0.681	1.469	2.972	3.602	0.361	0.729	0.829	0.631	2.482	0.338	0.684	0.040	0.348	0.074	0.005	0.052	0.905	0.070
847	chr1	211990889	212013030	+	0	NA	intron (NM_014873, intron 2 of 7)	intron (NM_014873, intron 2 of 7)	-1020	NR_135818	102723727	Hs.147656	NR_135818	ENSG00000229258	LOC102723727	-	uncharacterized LOC102723727	ncRNA	1.712	1.968	1.635	1.534	1.196	0.622	0.815	0.595	0.199	1.065	0.461	1.266	nan	0.568	0.141	0.924	1.214	2.268	3.847	2.323	2.219	nan	1.043	2.057	2.096	1.006	nan	1.968	2.093	1.122	0.933	0.274	0.650	4.147	4.799	1.355	3.036	1.335	0.752	0.940	0.618	1.534	1.330	0.815	1.266	0.894	0.669	0.103	0.516
479	chr1	120448550	120455536	+	0	NA	Intergenic	L1ME3|LINE|L1	-12896	NM_021794	11085	Hs.283011	NM_021794	ENSG00000134249	ADAM30	svph4	ADAM metallopeptidase domain 30	protein-coding	1.417	0.692	1.941	0.543	0.739	0.275	0.147	0.116	0.144	0.202	0.107	0.446	0.500	0.048	0.133	0.439	0.561	0.173	0.247	2.324	3.229	0.136	0.060	0.179	0.191	0.159	0.410	0.330	0.536	0.606	0.650	0.262	0.195	0.437	0.354	0.248	0.395	2.832	1.282	0.048	0.317	0.123	5.449	0.147	0.446	0.028	0.043	0.129	0.054
7038	chr6	148743510	148765962	+	0	NA	intron (NM_015278, intron 2 of 19)	AluSg|SINE|Alu	-74535	NM_001346508	23328	Hs.193133	NM_015278	ENSG00000111961	SASH1	SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding	nan	0.846	nan	0.067	0.213	0.078	0.361	0.283	0.122	0.381	0.182	0.064	0.354	0.093	0.121	0.473	0.341	0.369	0.705	0.402	0.359	1.525	0.454	0.280	0.228	0.126	0.241	2.416	2.994	0.815	0.443	0.249	0.467	0.742	0.801	0.339	0.764	1.098	0.567	0.045	0.106	0.217	0.255	0.361	0.064	0.116	3.082	0.292	0.227
2821	chr15	27304065	27318967	+	0	NA	intron (NM_033223, intron 3 of 9)	intron (NM_033223, intron 3 of 9)	94950	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	GABRG3-AS1	-	GABRG3 antisense RNA 1	ncRNA	nan	0.468	nan	0.170	0.182	0.096	0.121	0.081	0.021	0.179	0.155	0.166	2.136	0.044	0.090	0.517	0.325	0.676	0.649	0.514	0.572	0.131	0.029	0.158	0.133	0.268	0.388	4.600	4.375	nan	0.543	0.160	0.258	0.094	0.107	0.167	0.243	1.857	0.985	4.399	2.893	0.013	0.155	0.121	0.166	0.065	0.143	0.054	0.024
8141	chr9	45433535	45451004	+	0	NA	Intergenic	SST1|Satellite|centr	-436979	NR_121606	102723709	Hs.743015	NR_121606		LOC102723709	-	uncharacterized LOC102723709	ncRNA	1.412	3.694	2.235	1.802	1.228	0.476	0.981	0.370	0.106	1.393	0.786	1.226	2.474	0.247	0.078	2.107	2.613	1.198	1.534	2.292	2.249	4.891	2.061	6.677	5.800	2.403	2.652	0.906	1.619	2.136	2.046	2.640	4.806	3.252	3.183	2.438	3.028	2.458	1.496	0.276	0.846	0.960	1.081	0.981	1.226	1.479	1.750	1.353	1.016
619	chr1	162128923	162190203	+	0	NA	intron (NM_014697, intron 2 of 9)	L2a|LINE|L2	32666	NR_039798	100616386		NR_039798	ENSG00000266144	MIR4654	mir-4654	microRNA 4654	ncRNA	1.452	nan	1.802	0.221	2.573	1.283	0.425	0.201	0.097	0.917	0.599	1.327	0.897	0.074	0.109	0.494	0.402	0.987	2.127	0.780	nan	1.653	0.871	0.152	0.171	1.400	1.913	0.595	nan	0.712	0.584	0.554	0.833	0.800	0.718	1.076	2.743	2.098	1.121	0.196	0.748	0.226	0.056	0.425	1.327	0.273	0.098	0.392	0.567
2101	chr12	98766265	98796620	+	0	NA	Intergenic	Intergenic	69481	NR_033801	121456	Hs.620643	NR_033801	ENSG00000227825	SLC9A7P1	-	solute carrier family 9 member 7 pseudogene 1	pseudo	1.106	0.856	0.811	0.302	0.318	0.211	0.655	0.246	0.207	0.534	0.452	0.591	nan	0.075	0.108	0.317	0.204	0.541	0.508	0.917	1.017	4.426	0.782	0.344	0.338	0.490	nan	0.804	nan	0.678	0.476	0.164	0.266	1.114	1.391	0.303	0.453	3.146	1.573	0.245	0.288	0.191	0.164	0.655	0.591	0.064	0.501	0.048	0.188
8390	chrX	54068892	54075265	+	0	NA	promoter-TSS (NM_001184896)	promoter-TSS (NM_001184896)	-509	NM_001184896	23133	Hs.133352	NM_015107	ENSG00000172943	PHF8	JHDM1F|KDM7B|MRXSSD|ZNF422	PHD finger protein 8	protein-coding	2.408	3.049	1.324	6.144	6.541	2.854	1.164	1.047	0.075	1.330	0.955	2.734	7.783	2.111	0.093	1.353	1.572	2.525	3.677	7.086	6.667	5.466	2.411	7.171	7.128	1.866	2.159	9.783	10.517	5.553	4.819	3.025	4.242	4.859	4.460	4.065	4.828	2.690	1.246	1.741	1.622	1.749	1.410	1.164	2.734	0.576	5.896	2.022	1.557
7676	chr8	53240382	53267403	+	0	NA	intron (NM_014682, intron 2 of 25)	intron (NM_014682, intron 2 of 25)	68547	NM_014682	9705	Hs.655499	NM_014682	ENSG00000147488	ST18	NZF3|ZC2H2C3|ZC2HC10|ZNF387	ST18, C2H2C-type zinc finger	protein-coding	1.757	nan	0.780	3.253	3.213	1.597	0.493	0.103	0.035	1.454	0.576	2.993	2.011	0.028	0.118	0.576	0.717	0.455	0.747	2.672	2.861	4.669	2.418	0.823	0.884	1.360	nan	3.054	3.435	0.847	0.687	0.479	0.904	2.269	2.913	0.197	0.484	4.493	2.181	0.041	1.651	0.397	0.064	0.493	2.993	0.179	2.549	0.802	0.078
7995	chr8	144690863	144701874	+	0	NA	exon (NM_001317783, exon 7 of 11)	exon (NM_001317783, exon 7 of 11)	3281	NM_001317783	7264	Hs.404119	NM_003313	ENSG00000104522	TSTA3	FX|P35B|SDR4E1	tissue specific transplantation antigen P35B	protein-coding	3.820	1.687	nan	2.745	2.083	1.038	1.340	0.971	0.257	0.741	0.389	2.582	5.962	1.170	0.072	1.777	2.049	1.750	2.807	nan	3.694	nan	0.954	4.658	4.878	1.708	2.531	2.198	2.937	2.374	2.862	1.298	1.979	1.804	1.857	2.650	2.951	1.887	1.035	1.650	2.670	0.406	0.678	1.340	2.582	1.075	3.007	0.486	0.880
4996	chr20	49573918	49576292	+	0	NA	promoter-TSS (NM_003859)	promoter-TSS (NM_003859)	-4	NM_001317034	8813	Hs.654951	NM_003859	ENSG00000000419	DPM1	CDGIE|MPDS	dolichyl-phosphate mannosyltransferase subunit 1, catalytic	protein-coding	11.019	8.892	7.323	7.367	7.541	3.902	5.278	6.348	0.406	2.785	1.247	6.034	12.306	5.306	0.054	15.735	13.049	10.046	16.211	12.279	14.119	17.100	14.953	20.614	21.493	7.846	8.325	11.139	17.025	18.323	17.900	11.830	17.324	5.761	7.480	15.581	8.025	6.773	4.913	4.406	3.955	0.599	2.825	5.278	6.034	1.665	3.020	2.002	2.481
7680	chr8	54567774	54573186	+	0	NA	Intergenic	Intergenic	185122	NM_213620	51606	Hs.491737	NM_015941	ENSG00000047249	ATP6V1H	CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13	ATPase H+ transporting V1 subunit H	protein-coding	5.494	nan	2.025	2.920	8.976	4.927	8.287	0.765	0.029	2.856	1.135	9.612	10.726	0.195	0.138	0.885	2.112	1.394	2.154	14.065	13.014	6.247	3.464	7.546	7.257	0.209	nan	5.197	9.047	2.747	2.544	1.394	2.642	6.573	5.858	3.438	4.637	5.434	2.996	1.258	2.997	1.699	1.917	8.287	9.612	0.806	4.443	1.705	1.320
6768	chr6	42703143	42717325	+	0	NA	Intergenic	LTR33|LTR|ERVL	3650	NM_003192	6903	Hs.75064	NM_003192	ENSG00000124659	TBCC	CFC	tubulin folding cofactor C	protein-coding	3.605	1.792	3.369	2.644	4.304	2.068	2.122	1.492	0.320	1.768	0.900	4.668	4.108	2.940	0.172	2.543	3.184	1.800	2.488	4.726	3.802	7.257	2.576	2.789	3.098	3.134	3.970	6.091	nan	4.809	5.204	0.999	1.789	5.572	5.796	3.800	7.181	1.986	1.080	1.374	2.723	1.472	2.250	2.122	4.668	1.152	1.518	0.545	2.450
3395	chr17	38374519	38402516	+	0	NA	intron (NM_133264, intron 1 of 7)	AluSz|SINE|Alu	12943	NM_133264	147179	Hs.421622	NM_133264	ENSG00000171475	WIPF2	WICH|WIRE	WAS/WASL interacting protein family member 2	protein-coding	nan	1.472	1.252	0.323	0.992	0.461	0.625	0.608	0.244	0.387	0.351	0.444	1.615	0.391	0.092	0.778	0.943	0.727	1.138	nan	0.959	1.508	1.220	1.801	1.936	0.971	1.508	1.143	1.740	nan	0.744	0.459	0.701	0.493	0.577	1.792	3.335	0.718	0.613	0.469	0.560	0.099	0.297	0.625	0.444	0.252	0.276	0.176	0.911
4908	chr20	30145410	30202380	+	0	NA	Intergenic	AluSx|SINE|Alu	-12829	NR_046853	100874042	Hs.373741	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA	2.206	4.615	1.377	2.834	2.383	1.178	20.464	1.396	0.706	1.266	0.717	5.722	8.475	4.432	0.218	3.083	3.231	3.620	5.812	4.187	nan	8.861	2.041	6.110	6.224	2.548	3.406	1.939	2.269	1.943	1.651	1.303	2.301	3.466	4.064	1.677	nan	1.827	0.873	5.232	1.899	1.078	2.329	20.464	5.722	1.401	2.713	1.427	0.547
2322	chr13	62131168	62133906	+	0	NA	Intergenic	LTR17|LTR|ERV1	-130458	NR_134946	101926951	Hs.732367	NR_134946	ENSG00000279797	LOC101926951	-	uncharacterized LOC101926951	ncRNA	nan	1.082	nan	1.541	0.156	0.049	0.189	0.056	0.116		0.150	0.261	0.290		0.013	0.479	0.431	0.097	0.205	0.223	0.379	17.218	14.611	0.116	0.163	0.083	0.155	0.103	0.066	0.459	0.090	0.438	0.411	0.051	0.090	0.340	0.340	0.296	0.087	0.062	0.064	0.070	0.029	0.189	0.261	0.106		0.072	0.044
7620	chr8	23620057	23642924	+	0	NA	Intergenic	AluJb|SINE|Alu	-67379	NM_001136271	137814	Hs.532654	NM_001136271	ENSG00000180053	NKX2-6	CSX2|CTHM|NKX2F|NKX4-2	NK2 homeobox 6	protein-coding	nan	0.884	nan	0.046	0.172	0.098	0.280	0.056	0.085	0.068	0.075	0.047	0.085	0.067	0.106	0.357	0.246	0.166	0.248	nan	0.473	nan	0.098	0.053	0.056	0.099	0.159	0.266	0.258	4.257	3.932	0.163	0.166	0.098	0.147	1.287	4.642	nan	nan	0.012	0.062	0.007	0.055	0.280	0.047	0.004	2.050	0.038	1.979
3334	chr17	27043300	27049831	+	0	NA	promoter-TSS (NM_000984)	promoter-TSS (NM_000984)	-435	NM_000984	6147	Hs.419463	NM_000984	ENSG00000198242	RPL23A	L23A|MDA20	ribosomal protein L23a	protein-coding	6.434	nan	nan	1.686	5.539	2.435	2.855	3.934	0.760	0.885	0.519	3.333	5.641	7.712	0.202	7.489	7.822	6.238	9.643	4.873	4.749	6.635	2.690	9.645	10.250	2.765	4.056	10.595	13.265	10.503	11.882	6.005	9.130	3.677	4.134	8.047	8.570	3.750	1.496	4.460	1.536	0.409	1.676	2.855	3.333	1.399	1.671	3.664	5.250
4778	chr2	237892741	237909182	+	0	NA	Intergenic	L2a|LINE|L2	63849	NR_135202	93463	Hs.652810	NR_135202	ENSG00000124835	LOC93463	-	uncharacterized LOC93463	ncRNA	0.791	nan	1.404	1.543	0.704	0.322	0.435	0.087	0.068	0.087	0.064	0.793	4.292	0.033	0.107	0.859	0.762	0.178	0.386	1.567	1.697	0.137	0.063	0.340	0.277	0.398	0.669	1.082	nan	0.386	0.171	0.313	0.382	0.232	0.332	0.094	0.212	0.762	0.461	7.599	0.654	0.058	0.378	0.435	0.793	0.229	0.191	0.154	0.007
6801	chr6	50781507	50818926	+	0	NA	intron (NM_003221, intron 3 of 6)	intron (NM_003221, intron 3 of 6)	13777	NM_003221	7021	Hs.33102	NM_003221	ENSG00000008196	TFAP2B	AP-2B|AP2-B|PDA2	transcription factor AP-2 beta	protein-coding	0.760	1.403	nan	0.179	1.374	0.707	0.586	0.124	0.095	0.071	0.076	0.891	1.234	0.026	0.102	0.797	0.509	11.466	13.870	0.617	0.786	0.112	0.082	1.049	1.070	0.129	0.228	0.342	0.410	0.223	0.075	0.735	1.083	1.770	1.564	0.164	0.303	0.212	0.241	0.033	0.099	0.237	0.623	0.586	0.891	0.013	0.038	0.569	0.036
7312	chr7	69196538	69259053	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	163890	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding	nan	nan	nan	0.062	0.914	0.426	1.002	0.389	0.152	0.448	0.293	0.400	0.484	0.146	0.134	0.754	0.763	1.721	3.273	0.506	0.599	1.449	0.479	0.157	0.143	0.305	0.539	0.473	0.368	0.717	0.486	0.700	0.908	1.387	1.740	0.693	1.822	1.133	0.843	0.176	0.176	0.497	0.487	1.002	0.400	0.308	0.063	0.741	0.230
5355	chr3	35680689	35708150	+	0	NA	intron (NM_016300, intron 1 of 19)	intron (NM_016300, intron 1 of 19)	10570	NM_016300	10777	Hs.475902	NM_016300	ENSG00000172995	ARPP21	ARPP-21|R3HDM3|RCS|TARPP	cAMP regulated phosphoprotein 21	protein-coding	0.800	1.478	0.764	0.143	0.161	0.123	0.153	0.098	0.035	0.080	0.100	0.048	0.947	0.027	0.085	0.371	0.332	0.181	0.257	0.726	0.612	0.136	0.071	0.283	0.301	4.065	nan	0.712	0.574	0.739	0.451	0.144	0.258	0.047	0.047	0.402	1.105	0.587	0.462	0.292	0.084	0.007	0.211	0.153	0.048	0.070	0.540	0.086	0.238
377	chr1	78955565	78966834	+	0	NA	intron (NM_000959, intron 2 of 2)	intron (NM_000959, intron 2 of 2)	4471	NM_000959	5737	Hs.654365	NM_000959	ENSG00000122420	PTGFR	FP	prostaglandin F receptor	protein-coding	nan	0.771	1.096	0.161	0.215	0.169	0.184	0.673	0.057	0.098	0.078	0.021	1.291	0.076	0.134	0.257	0.289	0.245	0.270	0.425	nan	0.115	0.056	0.322	0.311	4.877	5.205	0.595	0.686	0.670	0.365	0.114	0.261	0.030	0.022	2.545	5.177	0.142	0.286	0.010	0.039	0.009	0.147	0.184	0.021		0.054	0.017	2.033
602	chr1	159022260	159029093	+	0	NA	TTS (NM_005531)	TTS (NM_005531)	20971	NM_004833	9447	Hs.733411	NM_004833	ENSG00000163568	AIM2	PYHIN4	absent in melanoma 2	protein-coding	nan	nan	0.800	0.026	0.222	0.047	0.075	0.212	0.105	0.091	0.084	0.017	0.316	0.016	0.134	0.390	0.283	4.457	13.232	0.281	nan	0.094	0.036	0.041	0.064	0.597	0.912	0.202	0.180	0.276	0.057	0.229	0.309	0.063	0.079	0.218	0.334	0.461	0.487	0.055	0.091	0.014	0.035	0.075	0.017		0.089	0.096	0.077
612	chr1	160369044	160382869	+	0	NA	intron (NM_020335, intron 1 of 7)	MIRb|SINE|MIR	5592	NM_020335	57216	Hs.99477	NM_020335	ENSG00000162738	VANGL2	LPP1|LTAP|STB1|STBM|STBM1	VANGL planar cell polarity protein 2	protein-coding	1.995	nan	1.025	0.584	0.945	0.558	5.499	0.086	0.092	0.250	0.151	2.751	3.051	0.889	0.118	1.380	1.974	1.664	2.610	4.854	nan	0.702	0.326	1.009	1.107	0.526	0.844	0.951	nan	1.104	1.085	1.432	2.639	0.374	0.246	1.607	2.593	0.432	0.573	0.544	1.812	0.083	3.129	5.499	2.751	0.345	0.030	0.799	0.924
5057	chr21	10551347	10556361	+	0	NA	Intergenic	Intergenic	437089	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding	1.713	1.562	nan	0.175	0.514	0.191	0.180	0.089	0.098	0.080	0.149	0.024	0.436	0.032	0.307	0.546	0.473	0.354	0.508	0.433	0.745	0.284	0.144	0.277	0.197	0.669	0.752	0.093	0.083	12.049	9.596	0.205	0.473	0.094	0.187	5.588	9.669	0.488	0.603	0.011	0.079	0.007	0.079	0.180	0.024	0.077	0.061	0.138	2.714
6547	chr5	169820688	169829247	+	0	NA	intron (NR_109899, intron 1 of 2)	MER4B|LTR|ERV1	-8286	NM_004137	3779	Hs.484099	NM_004137	ENSG00000145936	KCNMB1	BKbeta1|K(VCA)beta|SLO-BETA|hbeta1|hslo-beta|k(VCA)beta-1|slo-beta-1	potassium calcium-activated channel subfamily M regulatory beta subunit 1	protein-coding	nan	0.818	0.544	0.092	0.141	0.075	0.199	0.117	0.057	0.055	0.087	0.104	1.004	0.013	0.138	2.855	2.907	11.415	4.581	0.389	0.449	0.103	0.058	1.107	1.186	0.141	0.290	0.294	0.376	0.359	0.165	1.582	3.444	0.079	0.139	0.123	0.177	0.358	0.474	0.027	0.083	0.012	0.523	0.199	0.104	0.102	0.012	2.658	0.072
1391	chr11	41397418	41482917	+	0	NA	intron (NM_001258419, intron 1 of 6)	L3|LINE|CR1	41019	NM_001258419	57689	Hs.745123	NM_020929	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding	nan	0.915	0.633	0.073	0.383	0.202	0.071	0.065	0.060	0.243	0.199	0.058	0.265	3.517	0.171	0.739	0.640	0.217	0.258	0.214	0.300	1.640	0.811	0.127	0.133	0.222	0.391	0.222	0.207	0.252	0.079	0.135	0.192	1.156	0.793	0.239	nan	1.395	0.863	0.025	0.098	0.211	0.031	0.071	0.058	0.009	0.020	0.040	0.091
3579	chr17	76075313	76082097	+	0	NA	intron (NM_018996, intron 11 of 20)	MER11D|LTR|ERVK	29175	NR_040071	100131096	Hs.635442	NR_040071	ENSG00000204282	TNRC6C-AS1	-	TNRC6C antisense RNA 1	ncRNA	1.163	1.055	0.933	0.335	0.540	0.120	3.527	0.166	0.213	0.326	0.231	0.215	3.229	0.047	0.078	0.524	0.588	0.251	0.356	1.163	1.216	5.531	1.090	0.504	0.454	nan	0.772	2.994	3.514	0.918	0.666	0.502	0.520	0.308	0.343	0.301	0.857	nan	1.367	0.354	0.302	0.014	0.164	3.527	0.215	0.758	4.348	0.116	0.201
5234	chr22	29212455	29225478	+	0	NA	Intergenic	Intergenic	-22406	NM_005080	7494	Hs.437638	NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding	nan	1.753	1.419	0.966	5.582	2.826	0.394	0.177	0.161	0.653	0.267	2.718	1.158	0.100	0.092	0.563	0.697	0.542	nan	1.433	1.263	4.114	1.248	1.808	1.993	0.556	nan	5.544	5.407	0.669	0.350	0.325	0.644	1.522	1.969	0.332	nan	4.231	1.752	1.618	0.498	0.445	0.891	0.394	2.718	0.082	1.894	0.182	0.152
2794	chr14	105210843	105220649	+	0	NA	Intergenic	MER54A|LTR|ERVL	-3724	NM_006427	10572	Hs.112058	NM_006427	ENSG00000184990	SIVA1	CD27BP|SIVA|Siva-1|Siva-2	SIVA1 apoptosis inducing factor	protein-coding	4.506	1.765	2.704	4.585	1.909	0.929	1.853	1.041	0.412	1.221	1.098	2.222	4.131	1.361	0.101	1.952	1.653	2.033	2.974	4.577	4.857	3.953	1.900	1.376	1.424	1.756	2.568	3.301	5.388	3.480	3.476	1.275	2.044	2.317	2.425	1.531	1.357	4.742	2.166	2.229	1.925	0.388	0.991	1.853	2.222	0.867	3.046	0.314	0.392
5884	chr4	47074098	47093017	+	0	NA	intron (NM_000812, intron 3 of 8)	intron (NM_000812, intron 3 of 8)	50262	NM_000812	2560	Hs.27283	NM_000812	ENSG00000163288	GABRB1	EIEE45	gamma-aminobutyric acid type A receptor beta1 subunit	protein-coding	0.934	nan	nan	0.112	0.180	0.094	0.087	0.075	0.047	0.239	0.190	0.070	0.153	0.023	0.092	0.438	0.346	0.171	0.249	0.137	0.179	0.132	0.093	0.236	0.239	1.382	1.529	0.179	0.208	2.310	2.749	0.125	0.227	0.035	0.083	1.971	5.595	0.385	0.383	0.015	0.047	0.010	0.084	0.087	0.070	0.257	0.054	0.031	1.959
214	chr1	37289440	37303537	+	0	NA	intron (NM_000831, intron 10 of 15)	MLT1C|LTR|ERVL-MaLR	203356	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	glutamate ionotropic receptor kainate type subunit 3	protein-coding	0.998	nan	1.053	0.169	0.527	0.182	0.268	0.064	0.079	0.133	0.267	0.480	1.075	0.085	0.081	0.273	0.206	0.090	0.136	0.794	0.814	nan	0.147	0.141	0.151	3.425	4.271	18.936	15.120	nan	0.673	0.517	0.627	0.230	0.276	0.529	1.036	1.077	nan	0.656	0.171	0.074	0.101	0.268	0.480	0.254	0.422	0.133	0.409
6622	chr6	14765723	14827104	+	0	NA	Intergenic	Intergenic	-449793	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding	1.399	nan	1.115	0.773	0.537	0.309	1.127	0.250	0.094	0.133	0.105	0.898	0.353	0.062	0.077	0.508	0.538	1.706	2.145	0.811	0.745	0.790	0.319	0.340	0.322	0.645	0.878	0.596	0.594	0.843	0.613	0.444	0.650	0.703	1.083	0.750	3.320	0.655	0.525	0.158	0.352	0.144	0.207	1.127	0.898	0.175	0.042	0.251	0.865
2789	chr14	104826589	104866723	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-199365	NM_001286399	400258	Hs.153827	NM_001008404	ENSG00000184601	C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding	0.885	0.689	0.442	0.480	0.178	0.116	0.137	0.113	0.080	0.153	0.148	0.125	4.127	0.051	0.088	0.514	0.755	0.154	0.211	2.499	2.815	0.258	0.105	0.062	0.054	1.822	2.052	1.638	2.017	0.951	0.803	0.886	1.167	0.243	0.325	0.265	0.350	1.679	1.039	5.701	0.201	0.076	0.018	0.137	0.125	0.140	0.276	0.533	0.145
6718	chr6	33708738	33730379	+	0	NA	Intergenic	Intergenic	-4796	NM_001142883	117283	Hs.17253	NM_054111	ENSG00000161896	IP6K3	IHPK3|INSP6K3	inositol hexakisphosphate kinase 3	protein-coding	nan	2.232	nan	1.576	0.867	0.459	1.018	0.221	0.097	0.240	0.233	2.018	4.575	0.175	0.079	0.431	0.675	0.607	nan	nan	4.357	2.153	0.575	0.857	0.846	0.457	0.823	8.042	7.240	2.754	2.616	0.471	0.840	0.968	0.742	0.706	1.644	0.931	0.657	8.689	4.379	0.281	1.567	1.018	2.018	1.027	1.463	0.764	0.492
2074	chr12	92258639	92263127	+	0	NA	Intergenic	Intergenic	274606	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA	1.018	1.265	0.650	5.959	0.539	0.144	0.379	0.180	0.217	0.585	0.279	1.465	nan	0.073	0.118	0.423	0.211	0.304	0.241	1.782	2.234	13.298	9.691	0.276	0.271	0.507	nan	1.926	nan	0.340	0.267	0.213	0.187	1.667	2.499	0.235	0.448	0.721	0.550	0.050	0.080	0.085	0.124	0.379	1.465	0.088	0.091	0.022	0.196
731	chr1	186387638	186452650	+	0	NA	intron (NM_002597, intron 1 of 3)	intron (NM_002597, intron 1 of 3)	-2288	NM_022576	5132	Hs.654381	NM_002597	ENSG00000116703	PDC	MEKA|PHD|PhLOP|PhLP	phosducin	protein-coding	nan	nan	1.221	0.159	0.261	0.138	0.175	0.275	0.157	0.221	0.210	0.092	0.295	0.048	0.125	0.547	0.438	0.414	0.610	0.433	nan	0.406	0.175	nan	0.503	0.506	0.735	0.576	0.686	0.527	0.262	0.357	0.494	0.120	0.170	1.956	nan	0.975	0.582	0.038	0.129	0.023	0.032	0.175	0.092	0.018	0.167	0.124	1.855
2547	chr14	35161859	35172436	+	0	NA	Intergenic	AluJo|SINE|Alu	15876	NM_021914	1073	Hs.180141	NM_021914	ENSG00000165410	CFL2	NEM7	cofilin 2	protein-coding	2.101	0.891	1.095	0.335	0.561	0.287	0.666	2.247	1.110	0.284	0.229	0.611	0.434	0.597	0.109	0.271	0.573	0.385	0.873	1.109	1.071	1.628	0.426	0.704	0.677	4.153	5.157	0.750	1.197	2.991	3.242	0.324	0.414	1.863	1.680	0.655	1.807	0.777	0.663	0.131	0.733	0.470	1.452	0.666	0.611	1.321	0.287	0.301	0.633
8067	chr9	15176332	15188603	+	0	NA	intron (NM_152574, intron 16 of 19)	intron (NM_152574, intron 16 of 19)	67731	NM_001168342	158219	Hs.563630	NM_152574	ENSG00000155158	TTC39B	C9orf52	tetratricopeptide repeat domain 39B	protein-coding	nan	nan	1.509	0.720	0.505	0.288	1.074	0.312	0.092	2.429	0.743	0.781	0.674	0.062	0.093	0.227	0.321	0.225	0.311	0.891	0.940	4.810	5.716	0.151	0.169	1.965	2.597	0.369	0.433	5.493	5.331	0.297	0.456	3.645	3.472	1.836	4.610	4.766	2.386	0.082	0.161	1.275	2.130	1.074	0.781	0.737	0.033	0.089	3.573
4281	chr2	29263108	29277062	+	0	NA	intron (NM_001321538, intron 18 of 18)	intron (NM_001321538, intron 18 of 18)	27042	NM_001029883	388939	Hs.354243	NM_001029883	ENSG00000179270	C2orf71	RP54	chromosome 2 open reading frame 71	protein-coding	1.668	0.850	1.497	0.082	0.304	0.125	0.403	0.119	0.114	0.213	0.203	0.077	0.623	0.046	0.138	0.473	0.571	0.238	0.493	0.814	0.659	2.797	0.468	0.580	0.615	0.186	0.319	0.747	nan	2.444	1.758	0.357	0.306	0.475	0.908	2.413	7.663	1.002	0.777	2.401	0.172	0.048	0.093	0.403	0.077	0.362	1.114	0.035	2.999
1928	chr12	47966946	47975641	+	0	NA	Intergenic	Intergenic	128551	NM_001146075	79657	Hs.437855	NM_024604	ENSG00000005175	RPAP3	-	RNA polymerase II associated protein 3	protein-coding	1.073	nan	0.693	0.253	1.049	0.461	1.568	0.104	0.073	0.414	0.347	0.269	0.294	0.075	0.125	0.422	0.406	0.365	0.275	0.653	0.694	3.377	1.095	0.260	0.533	0.141	0.204	0.228	0.227	0.330	0.261	0.145	0.212	2.660	2.792	0.730	1.273	5.250	2.409	0.038	0.072	1.261	0.129	1.568	0.269	0.011	0.059	0.070	0.624
1092	chr10	32633693	32642829	+	0	NA	intron (NR_104163, intron 1 of 1)	intron (NR_104163, intron 1 of 1)	1969	NR_104163	102031319	Hs.128132	NR_104163	ENSG00000229327	LOC102031319	-	uncharacterized LOC102031319	ncRNA	3.454	2.909	3.434	1.510	4.782	2.698	2.353	5.210	0.454	1.096	0.542	6.392	5.061	2.649	0.135	6.414	5.582	5.940	nan	6.367	6.534	4.473	4.655	9.835	10.744	3.206	4.124	4.753	7.639	3.788	4.298	5.078	6.318	3.384	3.333	5.942	2.922	1.714	1.092	2.374	2.231	0.614	2.303	2.353	6.392	0.562	1.839	1.161	1.530
6396	chr5	106789164	106811653	+	0	NA	intron (NM_001962, intron 1 of 4)	intron (NM_001962, intron 1 of 4)	206188	NM_001962	1946	Hs.288741	NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding	0.890	1.166	0.737	0.122	0.855	0.490	0.233	0.110	0.058	0.146	0.076	0.037	0.577	0.168	0.105	0.268	0.213	1.933	5.579	0.430	0.507	0.432	0.219	0.171	0.194	1.416	1.756	0.586	0.908	0.526	0.304	0.269	0.454	0.633	1.085	0.267	0.448	0.439	0.365	0.065	0.184	0.114	0.277	0.233	0.037	0.173	0.185	0.252	0.131
1756	chr12	655154	663687	+	0	NA	intron (NM_173593, intron 10 of 19)	intron (NM_173593, intron 10 of 19)	36232	NR_134624	105369595	Hs.504422	NR_134624		LOC105369595	-	uncharacterized LOC105369595	ncRNA	1.161	nan	nan	0.348	0.424	0.282	0.232	0.230	0.151	0.130	0.143	0.237	0.431	0.127	0.110	0.231	0.357	0.359	0.552	nan	1.240	0.879	0.338	0.542	0.588	0.661	1.017	0.414	0.664	0.593	0.341	0.559	0.451	0.326	0.520	0.421	nan	1.222	0.676	0.105	0.389	0.011	5.625	0.232	0.237	1.387	0.083	0.082	0.086
2255	chr13	28013659	28030199	+	0	NA	intron (NM_001166263, intron 1 of 5)	L1ME2z|LINE|L1	2397	NM_001166262	219402	Hs.534582	NM_152912	ENSG00000122033	MTIF3	IF3mt	mitochondrial translational initiation factor 3	protein-coding	1.345	1.785	2.401	2.665	1.179	0.687	0.500	0.636	0.215	0.619	0.308	1.723	3.047	0.940	0.120	2.399	3.291	2.103	nan	3.574	3.323	3.262	1.020	1.645	1.665	1.022	1.432	2.491	3.410	2.666	2.420	3.588	4.735	1.010	0.767	1.283	2.639	1.016	0.673	1.275	1.142	0.144	0.543	0.500	1.723	0.124	0.967	4.207	0.702
7086	chr6	161301283	161307249	+	0	NA	Intergenic	MER4A1|LTR|ERV1	-108493	NM_005922	4216	Hs.390428	NM_005922	ENSG00000085511	MAP3K4	MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.871	nan	0.799	0.089	0.287	0.083	0.258	0.138	0.089	1.735	0.838	0.020	0.195	0.074	0.161	0.488	0.287	0.155	0.566	0.294	0.318	1.687	0.718	0.191	0.244	0.856	1.384	0.152	0.123	nan	0.317	0.160	0.283	8.490	9.797	0.329	0.596	0.211	0.244	0.019	0.030	1.911	0.013	0.258	0.020	0.341	0.017	0.053	0.061
4885	chr20	21550150	21579456	+	0	NA	intron (NR_109880, intron 1 of 3)	intron (NR_109880, intron 1 of 3)	14141	NR_109880	101929625	Hs.542413	NR_109880		LINC01727	-	long intergenic non-protein coding RNA 1727	ncRNA	0.748	1.031	nan	0.288	2.287	1.405	0.192	0.094	0.083	0.824	0.536	1.143	1.085	0.044	0.081	0.625	0.460	0.134	0.201	2.437	2.562	2.864	1.167	0.154	0.163	0.202	0.306	0.391	1.129	0.574	0.338	0.176	0.258	0.584	0.611	0.111	0.184	3.570	1.600	0.025	0.109	0.177	0.071	0.192	1.143	0.168	0.881	0.047	0.038
4748	chr2	232326703	232335772	+	0	NA	Intergenic	Intergenic	-2032	NM_005381	4691	Hs.79110	NM_005381	ENSG00000115053	NCL	C23	nucleolin	protein-coding	4.325	nan	3.849	3.722	3.173	1.610	2.576	0.777	0.143	1.478	0.519	3.157	5.526	3.104	0.134	5.406	5.348	3.964	5.314	4.710	4.291	4.241	2.249	8.386	8.131	2.685	3.649	8.474	nan	6.828	9.236	3.488	6.070	2.983	2.733	7.250	6.347	1.840	1.123	2.343	1.674	0.440	1.194	2.576	3.157	0.652	1.645	1.646	1.965
738	chr1	187203785	187223483	+	0	NA	intron (NR_126347, intron 1 of 3)	intron (NR_126347, intron 1 of 3)	151660	NR_126347	104169671		NR_126347		LINC01036	-	long intergenic non-protein coding RNA 1036	ncRNA	nan	nan	0.913	0.134	0.561	0.201	0.285	0.125	0.179	0.221	0.230	0.194	0.763	0.041	0.183	0.722	0.413	1.019	1.480	0.499	nan	0.909	0.385	nan	0.450	3.758	3.895	0.385	0.381	0.378	0.152	0.259	0.536	0.735	0.698	0.330	nan	0.406	0.393	0.061	0.123	0.072	0.121	0.285	0.194	0.015	0.062	0.097	0.051
484	chr1	143909987	143920815	+	0	NA	promoter-TSS (NR_144320)	promoter-TSS (NR_144320)	-554	NR_144320	728833	Hs.535577	NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding	6.104	nan	5.381	2.192	2.210	0.811	3.016	3.169	0.447	1.398	0.772	2.410	10.487	2.779	0.161	4.080	4.519	6.090	8.522	8.180	6.304	3.753	1.454	6.752	5.975	5.116	7.228	3.797	5.262	4.214	4.303	1.584	3.454	2.133	2.563	5.485	6.748	2.166	1.255	2.482	3.068	1.004	2.100	3.016	2.410	1.401	4.117	1.028	1.504
1243	chr10	124891741	124916470	+	0	NA	Intergenic	Intergenic	-3533	NM_005519	3167	Hs.444756	NM_005519	ENSG00000188816	HMX2	H6L|Nkx5-2	H6 family homeobox 2	protein-coding	nan	0.959	0.777	0.700	3.178	1.653	0.714	0.629	0.137	0.282	0.146	2.029	1.916	0.981	0.088	10.109	16.917	7.332	9.026	1.446	1.118	2.516	1.065	0.805	0.862	0.730	1.033	1.105	1.399	0.717	0.746	5.543	12.880	0.381	0.541	0.363	0.690	0.587	0.338	0.546	0.391	0.084	0.421	0.714	2.029	0.181	0.456	4.261	0.199
3408	chr17	40426596	40442081	+	0	NA	Intergenic	MIRb|SINE|MIR	-5227	NM_003152	6776	Hs.437058	NM_003152	ENSG00000126561	STAT5A	MGF|STAT5	signal transducer and activator of transcription 5A	protein-coding	2.086	1.910	nan	1.354	1.512	0.798	1.230	0.564	0.197	1.981	1.006	3.389	2.385	0.447	0.086	2.327	2.585	0.860	1.341	4.401	nan	3.314	1.157	2.950	3.065	0.946	1.396	3.296	nan	2.520	2.309	1.069	1.824	1.484	1.217	1.218	1.326	2.640	1.430	2.553	1.754	0.245	0.388	1.230	3.389	0.513	1.247	0.427	0.496
4833	chr20	6527642	6535698	+	0	NA	Intergenic	Intergenic	124291	NR_109953	101929244	Hs.542488	NR_109953	ENSG00000229876	CASC20	-	cancer susceptibility candidate 20 (non-protein coding)	ncRNA	0.782	1.273	0.589	0.164	0.113	0.016	0.048	0.066	0.023	0.077	0.095	0.068	0.319	0.032	0.097	0.615	0.298	7.331	3.855	0.306	0.374	0.436	0.132	0.709	0.885	0.231	0.378	0.590	0.518	0.458	0.280	0.196	0.343	0.152	0.236	0.187	0.410	0.533	0.485	0.021	0.011	0.023	0.030	0.048	0.068	0.012	0.075	0.109	0.022
7860	chr8	106326523	106340107	+	0	NA	intron (NM_012082, intron 1 of 7)	intron (NM_012082, intron 1 of 7)	2168	NM_012082	23414	Hs.431009	NM_012082	ENSG00000169946	ZFPM2	DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding	0.787	nan	nan	0.184	0.266	0.165	0.066	0.911	0.077	0.046	0.075	0.071	2.045	1.500	0.105	0.305	0.279	0.326	0.407	0.359	0.422	nan	0.247	0.593	0.655	4.765	nan	1.219	nan	nan	4.676	0.134	0.315	0.046	0.093	0.606	nan	0.291	0.297	0.012	0.046	0.021		0.066	0.071	0.580	0.029	0.047	1.094
623	chr1	162789237	162795263	+	0	NA	Intergenic	CpG	31758	NM_001304513	51478	Hs.492925	NM_016371	ENSG00000132196	HSD17B7	PRAP|SDR37C1	hydroxysteroid 17-beta dehydrogenase 7	protein-coding	1.785	nan	1.403	0.354	0.765	0.400	0.771	0.246	0.167	0.337	0.462	0.596	1.315	0.071	0.095	0.993	0.891	12.726	12.465	2.747	nan	7.135	1.729	0.533	0.614	1.091	1.520	1.079	nan	0.702	0.840	4.432	7.292	0.611	0.545	0.972	2.595	2.404	1.382	0.056	0.193	0.047	0.236	0.771	0.596	0.208	0.068	3.839	0.690
3885	chr18	68396499	68402960	+	0	NA	Intergenic	Intergenic	-81636	NM_001278515	220158	Hs.448217	NM_178506		GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1 (non-protein coding)	protein-coding	0.618	0.759	0.592	0.506	0.884	0.434	0.476	0.073		1.189	0.598	2.323	0.341	0.033	0.077	0.342	0.385	0.346	0.377	2.044	1.874	7.527	5.612	0.413	nan	0.069	nan	0.722	0.628	0.262	0.092	0.061	0.215	3.000	4.193	0.047	0.163	7.224	3.837	0.017	0.055	0.323	0.025	0.476	2.323		0.032	0.015	0.113
4091	chr19	44122243	44125375	+	0	NA	5' UTR (NM_182498, exon 1 of 3)	5' UTR (NM_182498, exon 1 of 3)	205	NM_182498	126299	Hs.99093	NM_182498	ENSG00000131116	ZNF428	C19orf37|Zfp428	zinc finger protein 428	protein-coding	7.843	4.347	7.729	6.569	8.499	4.781	5.925	2.014	0.421	2.364	1.233	5.901	7.700	4.365	0.180	12.223	13.776	13.708	15.543	13.182	11.138	15.037	6.004	12.859	12.915	6.905	8.871	9.787	12.711	11.284	12.538	8.361	14.462	8.099	7.579	8.070	9.487	5.584	2.933	7.184	6.836	1.404	2.997	5.925	5.901	2.535	3.281	4.864	2.405
2382	chr13	95358389	95366551	+	0	NA	3' UTR (NM_007084, exon 1 of 1)	3' UTR (NM_007084, exon 1 of 1)	-1730	NR_120417	101927248	Hs.626095	NR_120417		LOC101927248	-	uncharacterized LOC101927248	ncRNA	0.854	4.189	1.960	5.154	1.754	0.770	2.793	0.139	0.040	0.362	0.324	2.530	17.728	1.082	0.110	0.321	0.191	0.221	0.320	5.573	3.349	1.898	1.092	0.102	0.115	0.069	0.122	0.473	1.661	0.537	0.421	0.313	0.267	0.509	0.488	0.379	0.764	1.020	0.565	0.047	0.554	0.012	0.504	2.793	2.530	0.071	0.424	0.061	0.062
2564	chr14	37252542	37278936	+	0	NA	intron (NM_030631, intron 3 of 9)	L2c|LINE|L2	138966	NM_006194	5083	Hs.132576	NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding	1.376	0.869	0.937	1.241	1.492	0.832	0.213	0.167	0.085	0.434	0.351	0.635	6.923	0.054	0.114	0.220	0.163	0.176	0.266	2.622	2.828	2.384	0.823	0.271	0.275	0.349	0.488	2.454	2.816	0.576	0.233	0.448	0.445	4.916	4.286	0.150	0.194	0.696	0.606	5.052	1.975	1.651	0.081	0.213	0.635	0.110	0.220	0.506	0.089
4502	chr2	134111140	134138705	+	0	NA	intron (NM_207481, intron 3 of 17)	Charlie15a|DNA|hAT-Charlie	101155	NR_110294	101928161	Hs.661917	NR_110294	ENSG00000226953	LOC101928161	-	uncharacterized LOC101928161	ncRNA	nan	0.673	nan	0.149	0.223	0.093	0.222	0.271	0.070	0.086	0.089	0.100	0.337	0.043	0.092	0.325	0.130	1.910	3.378	0.212	0.229	0.164	0.105	0.113	0.109	0.166	0.235	0.307	nan	0.472	0.178	0.164	0.191	0.038	0.062	0.414	0.977	0.227	0.345	0.089	0.076	0.007	0.006	0.222	0.100	0.018	0.118	0.036	0.103
4462	chr2	109145800	109254451	+	0	NA	intron (NM_001193483, intron 1 of 9)	intron (NM_001193483, intron 1 of 9)	-4632	NM_004987	3987	Hs.597715	NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding	1.360	nan	1.166	0.421	0.900	0.477	0.317	0.432	0.122	0.581	0.445	0.694	1.891	3.428	0.153	0.496	0.559	0.494	0.844	1.289	1.249	1.913	0.697	0.725	0.700	1.371	1.839	1.612	2.121	0.841	0.741	0.321	0.525	0.976	1.107	0.627	0.924	1.032	0.662	0.618	0.399	0.369	0.268	0.317	0.694	0.311	0.714	0.164	0.209
5779	chr3	192121083	192128798	+	0	NA	intron (NM_004113, intron 2 of 5)	intron (NM_004113, intron 2 of 5)	1898	NM_021032	2257	Hs.390250	NM_004113	ENSG00000114279	FGF12	EIEE47|FGF12B|FHF1	fibroblast growth factor 12	protein-coding	nan	1.576	0.935	0.203	0.592	0.278	0.468	0.076		0.264	0.254	0.544	nan	0.606	0.111	1.061	0.724	0.222	0.219	1.864	1.370	2.697	1.135	4.899	5.272	5.714	7.163	0.479	0.899	2.246	2.492	0.474	0.790	1.343	0.894	3.004	4.558	0.700	0.737	0.014	0.084	0.256	0.122	0.468	0.544	0.353		0.122	1.176
7347	chr7	81125989	81137140	+	0	NA	Intergenic	Intergenic	59571	NR_136264	105369146	Hs.730390	NR_136264		LOC105369146	-	uncharacterized LOC105369146	ncRNA	0.977	0.822	0.835	0.124	0.467	0.189	0.126	0.763	0.216	0.521	0.418	0.246	0.327	0.426	0.211	0.530	0.373	0.432	0.572	0.591	0.693	1.044	0.150	0.212	0.191	6.216	5.461	0.581	0.403	0.577	0.269	0.214	0.449	3.026	6.425	0.408	nan	2.040	1.408	0.145	0.087	0.398	0.122	0.126	0.246	0.267	1.432	0.062	0.077
3538	chr17	71994924	72052811	+	0	NA	Intergenic	Intergenic	-175928	NM_000999	6169	Hs.380953	NM_000999	ENSG00000172809	RPL38	L38	ribosomal protein L38	protein-coding	1.367	1.042	1.466	0.740	0.704	0.371	0.846	0.115	0.092	0.320	0.247	0.427	1.421	0.054	0.097	0.747	1.157	0.361	0.429	2.550	2.872	0.996	0.349	0.114	0.112	nan	0.691	1.910	2.080	1.641	1.267	0.484	0.658	0.161	0.220	1.244	3.778	nan	0.965	0.309	0.441	0.028	0.461	0.846	0.427	0.062	0.498	0.289	1.363
3745	chr18	38154512	38159314	+	0	NA	Intergenic	Intergenic	510663	NR_110791	101927900	Hs.385522	NR_110791	ENSG00000261715	LINC01477	-	long intergenic non-protein coding RNA 1477	ncRNA	nan	1.022	0.801	0.135	1.172	0.749	0.389	0.134	0.033	0.559	0.191	0.196	0.379		0.083	0.476	0.200	0.266	0.253	0.650	0.783	14.192	5.267	0.153	0.167	0.563	0.734	nan	0.440	0.467	0.255	0.068	0.219	0.416	0.543	0.297	0.626	1.137	1.040	0.080	0.075	0.039	0.280	0.389	0.196		0.422	0.062	
7078	chr6	158878322	158901743	+	0	NA	intron (NM_001007466, intron 6 of 12)	MLT1A0|LTR|ERVL-MaLR	-67436	NM_020823	57583	Hs.99145	NM_020823	ENSG00000146433	TMEM181	GPR178|KIAA1423	transmembrane protein 181	protein-coding	nan	0.771	1.546	1.320	0.682	0.350	0.580	0.254	0.110	0.755	0.460	2.150	3.063	0.069	0.096	0.447	0.497	1.032	1.480	1.496	nan	4.140	1.539	0.379	0.390	0.461	0.568	2.876	3.188	0.851	0.579	0.298	0.502	2.707	3.469	0.799	nan	1.416	0.701	3.106	2.380	1.211	0.083	0.580	2.150	0.135	3.108	0.218	0.438
997	chr10	3815281	3831058	+	0	NA	intron (NR_027653, intron 2 of 3)	L3|LINE|CR1	4304	NM_001300	1316	Hs.4055	NM_001300	ENSG00000067082	KLF6	BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9	Kruppel like factor 6	protein-coding	1.558	2.569	2.580	3.025	3.677	1.929	2.982	5.317	0.521	1.888	0.723	4.030	5.134	7.452	0.131	2.645	3.320	4.005	7.549	3.820	2.922	8.652	8.772	5.238	5.223	1.715	2.011	2.695	5.775	1.522	2.316	0.838	1.723	2.858	3.032	3.075	3.173	1.869	1.102	0.500	2.233	0.445	0.924	2.982	4.030	0.331	1.165	0.458	1.096
7015	chr6	143159475	143176938	+	0	NA	intron (NM_006734, intron 1 of 9)	intron (NM_006734, intron 1 of 9)	98132	NM_006734	3097	Hs.510172	NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	nan	1.331	nan	0.246	0.211	0.101	0.762	1.036	0.055	0.089	0.091	0.322	1.513	0.709	0.149	1.100	1.306	1.746	6.159	0.560	0.704	0.232	0.162	0.409	0.429	0.532	0.981	0.419	0.406	0.783	0.456	0.681	1.253	0.105	0.097	0.355	0.952	0.192	0.167	0.647	0.113	0.005	0.095	0.762	0.322	0.123	0.222	0.505	0.128
6840	chr6	69417561	69440198	+	0	NA	intron (NM_001704, intron 3 of 31)	MER58A|DNA|hAT-Charlie	83247	NM_001704	577	Hs.13261	NM_001704	ENSG00000135298	ADGRB3	BAI3	adhesion G protein-coupled receptor B3	protein-coding	nan	0.953	0.738	0.649	0.415	0.198	0.158	0.080	0.129	0.152	0.150	0.053	0.702	0.033	0.115	1.078	0.717	0.290	0.457	0.632	0.765	0.122	0.073	0.331	0.245	3.153	3.591	0.678	0.769	3.777	2.950	0.109	0.206	0.810	0.777	0.649	1.228	0.423	0.294	0.533	0.578	0.114	0.093	0.158	0.053	0.208	0.134	0.061	0.360
3394	chr17	38247445	38281501	+	0	NA	Intergenic	Intergenic	-7495	NM_021724	9572	Hs.724	NM_021724	ENSG00000126368	NR1D1	EAR1|THRA1|THRAL|ear-1|hRev	nuclear receptor subfamily 1 group D member 1	protein-coding	nan	2.352	1.826	1.143	3.284	1.878	1.938	3.419	0.630	1.289	0.689	2.290	3.591	1.311	0.105	1.819	2.074	1.624	2.592	nan	2.723	2.751	0.912	4.898	5.055	1.779	2.526	3.734	4.805	nan	2.763	1.370	1.972	0.898	1.040	1.899	3.833	1.681	0.986	1.504	2.588	0.284	1.080	1.938	2.290	0.642	1.538	0.865	1.342
608	chr1	159849961	159896584	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-3366	NM_012337	25790	Hs.647705	NM_012337	ENSG00000213085	CFAP45	CCDC19|NESG1	cilia and flagella associated protein 45	protein-coding	nan	nan	1.699	0.659	1.578	0.784	0.716	0.844	0.173	0.719	0.388	2.176	0.931	0.290	0.113	0.820	0.967	2.820	6.535	1.587	nan	1.355	0.827	0.863	0.952	0.869	1.293	1.500	2.975	0.514	0.280	0.916	1.653	2.369	2.634	0.791	1.124	1.003	0.760	0.498	0.834	0.509	0.161	0.716	2.176	0.121	0.212	0.654	0.145
1649	chr11	113029963	113051773	+	0	NA	intron (NM_001076682, intron 2 of 19)	intron (NM_001076682, intron 2 of 19)	103755	NR_034101	100288346	Hs.661826	NR_034101	ENSG00000227487	NCAM1-AS1	-	NCAM1 antisense RNA1	ncRNA	0.926	1.407	0.770	0.294	0.765	0.375	2.143	0.130	0.026	1.224	0.644	0.604	1.217	0.044	0.125	2.632	nan	3.807	3.168	1.132	1.206	5.383	2.705	1.215	1.161	0.921	nan	1.019	1.226	0.541	0.356	0.574	1.157	1.425	2.071	0.378	0.893	1.990	1.297	0.275	0.105	0.334	0.747	2.143	0.604	0.187	0.502	0.330	0.295
5731	chr3	182127901	182136137	+	0	NA	Intergenic	Intergenic	72131	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA	1.139	1.234	0.858	0.506	0.364	0.274	0.109	0.072	0.116	0.133	0.191	0.233	0.430	0.064	0.076	0.255	0.165	0.182	0.370	0.416	0.640	0.925	0.325	0.117	0.104	0.475	1.023	0.514	0.562	0.803	0.326	0.273	0.433	0.454	0.318	0.225	0.236	0.824	0.768	0.080	0.537	0.026	5.852	0.109	0.233	0.058	0.050	0.108	0.089
7994	chr8	144675182	144681285	+	0	NA	intron (NM_001130055, intron 1 of 8)	intron (NM_001130055, intron 1 of 8)	1350	NM_001130057	1936	Hs.333388	NM_001960	ENSG00000104529	EEF1D	EF-1D|EF1D|FP1047	eukaryotic translation elongation factor 1 delta	protein-coding	6.375	3.469	nan	5.087	4.882	2.796	3.273	2.012	0.345	1.158	0.657	6.267	10.640	1.923	0.055	3.591	3.520	3.839	6.661	nan	8.568	nan	2.583	8.984	10.060	1.850	2.957	3.910	6.360	3.792	4.487	3.181	4.600	4.572	3.851	4.171	3.431	3.122	1.559	5.204	3.420	0.751	2.024	3.273	6.267	0.847	3.985	0.956	1.175
6036	chr4	141347110	141350096	+	0	NA	intron (NM_001130675, intron 1 of 15)	CpG	212	NM_004362	1047	Hs.86368	NM_004362	ENSG00000153132	CLGN	-	calmegin	protein-coding	4.711	2.680	1.713	5.689	6.122	2.857	1.224	0.605	0.053	0.930	0.432	3.941	7.634	1.989	0.073	1.592	3.302	3.135	4.492	5.957	4.789	4.336	2.118	6.449	5.858	1.542	1.962	3.924	5.353	3.432	5.030	12.770	10.755	4.100	4.950	3.234	3.702	2.013	1.437	0.519	2.810	1.046	2.854	1.224	3.941	0.778	1.329	3.762	1.114
2226	chr12	133483561	133486919	+	0	NA	Intergenic	CpG	20812	NR_110919	101928530	Hs.560003	NR_110919	ENSG00000236617	LOC101928530	-	uncharacterized LOC101928530	ncRNA	1.365	2.269	0.586	2.230	1.025	0.575	4.245	0.312	0.122	0.371	0.394	1.782	6.120	4.065	0.252	0.573	1.087	0.048	0.133	3.745	3.274	3.762	1.270	1.089	0.939	0.083	0.241	nan	3.760	0.953	1.026	0.803	1.367	0.822	0.542	1.071	1.306	0.332	0.183	2.768	3.014	0.054	14.615	4.245	1.782	1.012		0.473	0.256
2878	chr15	51649582	51673846	+	0	NA	intron (NM_181789, intron 1 of 9)	intron (NM_181789, intron 1 of 9)	-7729	NM_001330297	342035	Hs.526441	NM_181789	ENSG00000186417	GLDN	CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112	gliomedin	protein-coding	0.833	1.274	1.510	0.109	6.634	3.460	0.231	0.176	0.119	0.533	0.398	1.025	0.360	0.022	0.096	0.516	0.365	2.646	1.291	0.295	0.298	2.735	1.364	0.227	0.292	0.322	0.517	0.308	0.301	0.579	0.208	1.891	2.712	2.151	2.693	0.375	0.978	1.303	0.890	0.037	0.085	0.615	0.245	0.231	1.025	0.028	0.247	2.766	0.438
4535	chr2	144183708	144200373	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	305141	NM_018460	55843	Hs.171011	NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding	0.883	nan	1.366	0.095	0.246	0.114	0.191	1.061	0.122	0.064	0.151	0.108	0.317	0.026	0.076	0.340	0.161	0.297	0.822	0.224	0.278	0.215	0.068	0.232	0.215	3.591	3.853	0.310	0.271	0.385	0.168	0.078	0.170	0.040	0.061	0.356	0.683	0.318	0.352	0.029	0.016	0.017	0.137	0.191	0.108	0.024	0.018	0.065	0.106
1474	chr11	65812808	65821107	+	0	NA	promoter-TSS (NM_033036)	promoter-TSS (NM_033036)	-306	NM_033036	89792	Hs.208343	NM_033036	ENSG00000175229	GAL3ST3	GAL3ST-3|GAL3ST2	galactose-3-O-sulfotransferase 3	protein-coding	nan	2.356	2.163	2.883	3.743	1.624	2.488	0.938	0.324	0.937	0.575	3.412	4.147	1.646	0.121	4.870	4.135	2.810	3.533	8.278	8.192	4.440	1.896	3.656	3.885	2.538	3.521	4.349	5.223	3.749	3.392	2.730	3.956	1.540	2.197	2.202	3.469	1.929	0.951	5.091	3.259	0.253	1.648	2.488	3.412	0.913	1.469	2.313	1.030
125	chr1	20124389	20152448	+	0	NA	Intergenic	Intergenic	3353	NM_019062	54546	Hs.124835	NM_019062	ENSG00000178828	RNF186	-	ring finger protein 186	protein-coding	0.944	1.042	nan	2.108	0.579	0.286	0.233	0.238	0.212	0.213	0.142	0.948	1.034	0.232	0.099	0.412	0.501	0.534	0.969	2.837	2.854	1.329	0.412	1.385	1.387	0.178	0.351	8.872	10.045	0.441	0.351	0.414	0.497	0.094	0.130	0.264	0.425	1.459	1.059	0.612	0.945	0.038	0.057	0.233	0.948	0.087	0.076	0.293	0.058
44	chr1	6293412	6310299	+	0	NA	Intergenic	CpG	-2397	NM_001024598	390992	Hs.532677	NM_001024598	ENSG00000173673	HES3	bHLHb43	hes family bHLH transcription factor 3	protein-coding	2.375	nan	1.457	0.202	1.306	0.719	0.984	0.615	0.153	0.632	0.361	0.784	4.320	1.104	0.101	1.140	1.601	1.147	1.522	2.762	2.584	1.917	0.734	1.760	1.712	1.400	nan	nan	9.270	nan	1.688	1.299	1.807	0.938	1.206	1.821	2.273	1.036	0.605	2.374	0.939	0.181	0.420	0.984	0.784	0.534	0.661	0.381	0.553
5967	chr4	90823041	90851510	+	0	NA	intron (NM_007351, intron 3 of 7)	intron (NM_007351, intron 3 of 7)	21223	NM_007351	22915	Hs.268107	NM_007351	ENSG00000138722	MMRN1	ECM|EMILIN4|GPIa*|MMRN	multimerin 1	protein-coding	0.683	0.800	0.576	0.191	0.639	0.318	0.162	0.094	0.063	0.116	0.111	0.042	0.742	0.019	0.077	0.457	0.262	0.879	0.918	0.213	0.363	0.119	0.057	0.457	0.496	0.712	0.871	0.373	0.360	0.567	0.236	0.132	0.212	3.292	3.606	0.210	0.544	0.370	0.274	0.029	0.099	0.961	0.069	0.162	0.042	0.065	0.074	0.059	0.053
2152	chr12	115100050	115144330	+	0	NA	promoter-TSS (NM_005996)	promoter-TSS (NM_005996)	-221	NM_005996	6926	Hs.744016	NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box 3	protein-coding	nan	nan	0.429	0.593	0.823	0.457	0.846	0.078	0.075	0.035	0.095	0.791	2.736	0.380	0.104	0.836	1.129	0.245	0.343	nan	nan	nan	0.050	21.399	21.768	0.117	0.210	nan	nan	0.237	0.091	3.984	8.117	0.572	0.402	0.955	1.163	nan	0.326	7.512	1.104	0.130	0.274	0.846	0.791	0.011	0.598	3.286	0.447
7258	chr7	39052169	39057118	+	0	NA	intron (NM_001166018, intron 2 of 10)	intron (NM_001166018, intron 2 of 10)	-1476	NR_138047	100689074	Hs.675876	NR_138047		POU6F2-AS2	-	POU6F2 antisense RNA 2	ncRNA	0.942	0.779	0.991	1.075	0.422	0.355	0.180	0.240		0.195	0.101	3.507	0.401	0.109	0.170	1.984	2.572	0.483	0.360	0.272	nan	0.755	0.357	23.113	25.777	0.774	nan	nan	nan	0.280	0.180	0.671	0.592	3.453	2.757	0.901	nan	0.474	0.353	0.139	2.174	0.789	0.081	0.180	3.507	0.226	3.703	0.332	0.320
5312	chr22	50326540	50333744	+	0	NA	Intergenic	Intergenic	17864	NM_001284317	79174	Hs.211282	NM_024324	ENSG00000184164	CRELD2	-	cysteine rich with EGF like domains 2	protein-coding	1.225	0.879	nan	0.611	3.123	2.004	3.984	2.603	0.271	0.282	0.305	2.557	1.114	2.957	0.132	1.670	4.646	0.832	1.291	3.017	2.508	1.054	0.508	1.379	1.170	0.161	0.321	3.322	6.684	1.192	1.074	0.601	0.963	0.617	0.653	0.876	1.562	1.318	0.724	0.449	0.477	0.079	0.705	3.984	2.557	0.696	4.978	1.170	0.511
7207	chr7	25920750	25934496	+	0	NA	Intergenic	AluJb|SINE|Alu	61983	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA	2.320	1.165	2.777	0.313	0.400	0.275	0.550	0.097	0.140	0.356	0.249	0.314	0.482	0.177	0.155	3.172	3.034	0.697	nan	0.734	0.892	5.557	1.917	0.925	0.973	1.416	1.929	0.809	0.942	2.853	2.031	4.594	5.374	0.360	0.369	1.276	nan	0.700	0.564	0.123	0.148	0.028	0.752	0.550	0.314	0.169	0.209	5.694	0.804
5016	chr20	56242296	56261665	+	0	NA	intron (NM_199171, intron 1 of 3)	L2a|LINE|L2	13700	NM_001255976	56937	Hs.517155	NM_020182	ENSG00000124225	PMEPA1	STAG1|TMEPAI	prostate transmembrane protein, androgen induced 1	protein-coding	1.687	3.570	0.730	0.068	1.843	0.879	0.540	0.132	0.091	0.428	0.175	1.949	0.465	0.115	0.124	1.356	nan	0.570	0.628	3.914	2.881	0.692	0.214	0.140	0.143	0.821	1.376	0.139	0.146	1.350	1.340	0.530	0.765	0.297	0.274	0.978	1.640	1.157	0.884	1.660	0.513	0.069	0.103	0.540	1.949	0.643	2.940	0.240	0.384
2008	chr12	67908233	67914987	+	0	NA	Intergenic	Intergenic	-2252	NR_103861	100507175	Hs.505986	NR_103861	ENSG00000203585	LOC100507175	-	uncharacterized LOC100507175	ncRNA	1.089	1.339	1.563	1.961	2.436	1.089	1.551	0.505	0.168	4.590	2.552	1.892	5.990	0.048	0.078	0.505	0.640	0.635	0.759	5.536	nan	7.641	3.449	0.281	0.321	1.677	2.090	7.552	6.953	0.521	0.345	0.755	0.901	3.211	3.409	0.384	0.577	4.315	2.585	0.707	1.578	1.174	0.258	1.551	1.892	0.525	0.301	1.025	0.091
2862	chr15	45457576	45468055	+	0	NA	intron (NM_001301170, intron 3 of 3)	MIR3|SINE|MIR	10590	NM_001301171	90525	Hs.310399	NM_138356	ENSG00000138606	SHF	-	Src homology 2 domain containing F	protein-coding	1.926	1.460	5.252	1.190	2.364	1.469	4.693	1.224	0.125	1.015	0.679	3.064	1.722	1.253	0.085	1.611	2.441	1.169	1.812	3.183	3.877	2.576	1.096	2.652	2.558	1.387	nan	2.044	4.065	3.663	2.865	1.900	2.591	3.150	3.710	1.793	1.718	2.733	1.306	0.953	0.939	1.066	2.288	4.693	3.064	1.135	1.008	0.604	0.861
1564	chr11	86379069	86384566	+	0	NA	intron (NM_001014811, intron 1 of 13)	intron (NM_001014811, intron 1 of 13)	1423	NM_001014811	10873	Hs.199743	NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding	3.485	3.117	1.696	4.616	4.699	3.096	1.120	0.978	0.117	2.100	1.142	0.436	11.133	0.553	0.151	10.171	12.994	2.704	4.921	6.998	6.569	2.083	0.965	6.908	7.539	0.198	0.394	4.183	5.803	6.591	8.392	3.627	3.992	6.768	5.583	2.510	4.878	3.458	2.177	3.676	2.434	1.074	1.588	1.120	0.436	8.022	1.643	0.813	1.692
6504	chr5	148348252	148359886	+	0	NA	Intergenic	Intergenic	88668	NM_024577	79628	Hs.483784	NM_024577	ENSG00000169247	SH3TC2	CMT4C|MNMN	SH3 domain and tetratricopeptide repeats 2	protein-coding	nan	0.734	0.934	0.038	0.621	0.314	0.242	2.137	0.247	0.242	0.179	0.124	1.136	0.038	0.070	0.182	0.152	0.410	1.194	0.293	0.382	0.116	0.060	0.097	0.110	0.780	1.218	0.292	0.355	0.398	0.181	0.219	0.189	2.853	4.608	0.279	0.494	0.966	0.528	0.010	0.337	0.701	0.020	0.242	0.124	0.033	0.682	0.042	0.129
6935	chr6	123031490	123077127	+	0	NA	Intergenic	Intergenic	-16038	NM_001319042	2173	Hs.26770	NM_001446	ENSG00000164434	FABP7	B-FABP|BLBP|FABPB|MRG	fatty acid binding protein 7	protein-coding	1.415	1.602	1.471	0.236	2.134	1.102	0.430	0.104	0.056	1.079	0.450	1.438	3.046	0.033	0.110	0.297	0.147	0.337	0.499	2.876	2.847	6.100	4.008	0.300	0.318	0.722	0.936	1.432	2.662	1.286	1.219	0.213	0.511	3.052	4.101	0.574	1.157	1.462	0.779	1.764	4.075	0.732	0.651	0.430	1.438	0.155	0.209	0.395	0.181
2663	chr14	69862413	69871028	+	0	NA	intron (NM_018375, intron 1 of 6)	AluJb|SINE|Alu	1335	NM_001252148	55334	Hs.432690	NM_018375	ENSG00000029364	SLC39A9	ZIP-9|ZIP9	solute carrier family 39 member 9	protein-coding	6.463	2.498	3.189	4.435	3.423	1.976	3.768	2.653	0.412	1.202	0.965	2.734	6.589	2.598	0.209	4.008	3.565	4.993	6.628	6.853	6.366	4.805	3.045	11.335	11.882	4.023	4.927	6.003	nan	9.903	9.393	4.220	6.569	4.726	6.406	4.739	3.730	3.582	nan	3.991	2.461	0.691	2.428	3.768	2.734	1.193	1.497	1.448	0.905
4690	chr2	208327532	208340732	+	0	NA	Intergenic	Intergenic	-60484	NM_134442	1385	Hs.516646	NM_004379	ENSG00000118260	CREB1	CREB|CREB-1	cAMP responsive element binding protein 1	protein-coding	0.985	nan	1.634	0.523	1.143	0.559	1.074	0.255	0.185	0.426	0.313	0.707	3.137	0.197	0.070	0.433	0.471	0.432	0.604	0.389	0.388	0.290	0.105	0.596	0.740	4.758	5.236	0.528	0.529	0.683	0.633	0.277	0.347	1.425	1.491	0.503	1.160	0.747	0.320	1.793	0.366	0.528	0.232	1.074	0.707	0.162	0.622	0.046	0.131
7428	chr7	107875431	107907414	+	0	NA	intron (NM_005010, intron 3 of 27)	intron (NM_005010, intron 3 of 27)	-10808	NM_001037132	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding	nan	1.516	1.120	0.563	1.166	0.598	0.817	0.199	0.110	0.441	0.346	1.324	1.356	0.061	0.149	0.425	0.421	0.310	0.436	1.637	1.822	3.154	0.528	0.251	0.270	0.492	0.709	1.526	1.418	0.619	0.437	0.548	0.733	1.253	2.347	0.600	nan	2.294	1.304	2.959	1.992	0.305	0.209	0.817	1.324	0.228	0.201	0.588	0.240
397	chr1	89718575	89730748	+	0	NA	TTS (NM_052942)	TTS (NM_052942)	13883	NM_052942	115362	Hs.513726	NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding	0.873	nan	nan	0.990	0.273	0.184	1.319	1.050	0.118	0.115	0.141	0.148	11.323	0.018	0.102	0.352	0.228	1.068	0.824	0.687	0.657	0.594	0.180	0.371	0.425	3.053	3.972	0.672	0.619	0.522	0.285	0.140	0.260	1.461	1.915	0.208	0.364	1.786	0.898	1.028	0.458	0.299	0.632	1.319	0.148	0.072	0.011	0.040	0.061
1096	chr10	34824946	34842827	+	0	NA	intron (NM_001184785, intron 2 of 24)	intron (NM_001184785, intron 2 of 24)	270367	NM_001184791	56288	Hs.131489	NM_019619	ENSG00000148498	PARD3	ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2	par-3 family cell polarity regulator	protein-coding	0.688	1.043	0.703	0.063	0.852	0.459	0.111	1.629	0.382	0.150	0.143	0.261	0.259	0.110	0.102	0.461	0.291	0.898	nan	0.331	0.355	0.979	0.528	8.350	8.616	0.440	0.630	0.675	0.549	0.192	0.074	0.267	0.554	0.305	0.288	0.267	0.473	0.408	0.361	0.056	0.048	0.107	0.142	0.111	0.261	0.044	0.051	0.232	0.145
5368	chr3	50159171	50195247	+	0	NA	intron (NR_135301, intron 1 of 3)	intron (NR_135301, intron 1 of 3)	-15269	NM_001318798	6405	Hs.32981	NM_004186	ENSG00000001617	SEMA3F	SEMA-IV|SEMA4|SEMAK	semaphorin 3F	protein-coding	1.678	1.475	nan	0.123	0.392	0.200	0.818	0.326	0.130	0.104	0.082	0.483	0.828	0.314	0.062	0.509	0.698	0.490	0.615	0.866	0.765	0.818	0.287	0.379	0.324	0.383	0.696	0.724	1.292	nan	1.915	0.523	0.818	0.202	0.184	2.308	7.325	0.410	0.357	1.268	0.564	0.047	0.844	0.818	0.483	0.522	0.093	0.424	4.422
2934	chr15	69843362	69858737	+	0	NA	Intergenic	Intergenic	-3010	NR_026979	145837	Hs.410126	NR_026979		DRAIC	-	downregulated RNA in cancer, inhibitor of cell invasion and migration	ncRNA	0.701	1.050	nan	0.809	3.251	1.603	0.342	0.280	0.073	2.182	2.120	5.316	2.865	0.056	0.085	0.345	0.264	0.338	0.727	1.570	2.634	nan	0.643	0.144	0.130	0.183	0.390	2.376	5.147	0.555	0.335	0.237	0.429	1.952	1.531	0.308	0.711	2.458	1.245	0.284	0.659	0.661	0.300	0.342	5.316	0.067	0.841	0.212	0.114
6088	chr4	182280082	182320188	+	0	NA	Intergenic	Intergenic	-219833	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA	nan	0.767	nan	0.033	2.052	1.104	0.109	0.084	0.080	1.408	0.704	0.101	0.136	0.074	0.093	0.187	0.155	0.234	0.265	0.246	0.323	8.985	4.973	0.161	0.139	0.087	0.154	0.275	0.257	0.271	0.152	0.129	0.207	3.905	4.586	0.074	0.134	0.367	0.336	0.074	0.674	1.048	0.172	0.109	0.101	0.005	0.013	0.034	0.025
5757	chr3	186990746	186995194	+	0	NA	intron (NR_033519, intron 1 of 9)	intron (NR_033519, intron 1 of 9)	-16090	NR_135551	101929130		NR_135551	ENSG00000283175	LOC101929130	-	uncharacterized LOC101929130	ncRNA	1.069	0.969	0.611	0.079	0.439	0.144	0.485	0.120	0.036	0.129	0.093	0.055	0.554	0.048	0.110	8.466	8.491	13.450	11.609	0.344	0.378	0.185	0.096	0.554	0.392	0.052	0.230	0.314	0.233	3.337	3.513	5.983	7.731	0.038	0.044	0.209	0.256	0.105	0.279	0.026	0.059	0.022	0.037	0.485	0.055	0.021		4.895	0.029
2185	chr12	122231704	122251735	+	0	NA	promoter-TSS (NR_002809)	promoter-TSS (NR_002809)	-329	NR_002809	338799	Hs.524804	NR_002809	ENSG00000212694	LINC01089	LIMT	long intergenic non-protein coding RNA 1089	ncRNA	5.120	4.102	5.259	6.129	6.669	3.396	5.278	2.343	0.337	3.943	1.945	8.725	14.687	7.618	0.150	5.372	6.334	5.979	9.052	11.671	10.593	nan	3.832	11.710	12.178	3.796	5.082	10.155	11.693	7.571	7.512	4.565	8.005	8.289	7.713	6.023	6.391	4.264	2.205	7.619	9.504	2.833	4.249	5.278	8.725	1.668	4.256	3.772	2.354
4432	chr2	91595126	91615348	+	0	NA	Intergenic	HSATII|Satellite|Satellite	242738	NR_027238	654342	Hs.469287	NR_027238		LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo	6.268	8.261	7.076	1.019	3.041	1.673	0.570	1.182	5.904	0.994	2.418	0.840	3.493	0.697	3.553	2.916	1.099	0.707	0.731	1.749	2.893	0.961	0.864	1.218	1.101	2.378	3.386	2.324	2.456	3.117	0.728	1.228	2.407	0.500	1.086	1.523	2.760	1.174	1.765	0.398	0.569	0.510	0.482	0.570	0.840	0.284	0.361	0.786	0.830
1191	chr10	102651975	102673649	+	0	NA	Intergenic	L2c|LINE|L2	-9514	NM_001136123	55719	Hs.447458	NM_018121	ENSG00000119906	SLF2	C10orf6|FAM178A	SMC5-SMC6 complex localization factor 2	protein-coding	nan	nan	1.282	0.508	1.013	0.445	0.414	0.548	0.125	0.214	0.166	0.941	1.660	0.628	0.084	3.331	3.981	2.154	1.484	0.928	0.985	1.771	0.700	0.461	0.450	0.624	nan	1.309	1.847	0.512	0.525	0.931	1.267	0.418	0.522	1.101	nan	0.739	0.581	0.239	0.583	0.113	0.249	0.414	0.941	0.107	0.574	1.053	0.557
8384	chrX	45617666	45676733	+	0	NA	Intergenic	Intergenic	-40669	NR_029636	407007		NR_029636	ENSG00000207725	MIR222	MIRN222|miRNA222|mir-222	microRNA 222	ncRNA	0.634	0.747	nan	0.034	0.140	0.087	0.054	1.137	0.101	0.178	0.137	0.030	0.220	2.955	0.097	0.101	0.042	1.412	3.405	0.157	0.230	0.852	0.344	0.107	0.116	0.080	0.149	0.209	0.223	0.525	0.467	0.078	0.084	0.139	0.136	0.303	0.747	0.584	0.346	0.059	0.032	0.031	0.011	0.054	0.030	0.015	0.024	0.017	0.253
823	chr1	206132443	206141331	+	0	NA	promoter-TSS (NM_001317901)	promoter-TSS (NM_001317901)	-378	NM_001317901	729533	Hs.339665	NM_001123168	ENSG00000196550	FAM72A	LMPIP|Ugene	family with sequence similarity 72 member A	protein-coding	4.033	3.256	3.415	2.607	2.273	1.055	3.678	3.673	0.414	1.686	0.786	2.805	12.080	3.510	0.190	3.680	3.966	6.057	8.470	7.561	6.152	3.921	1.265	nan	nan	5.136	6.603	3.457	4.497	3.571	3.924	1.199	2.253	1.834	2.290	4.373	6.420	1.765	1.117	2.637	4.040	1.242	2.120	3.678	2.805	1.768	4.297	0.961	1.852
5722	chr3	181402806	181486221	+	0	NA	intron (NR_004053, intron 4 of 4)	CpG	14801	NM_003106	6657	Hs.518438	NM_003106	ENSG00000181449	SOX2	ANOP3|MCOPS3	SRY-box 2	protein-coding	1.310	5.472	2.103	1.938	2.268	1.156	0.693	0.123	0.156	1.275	0.712	0.275	1.633	5.177	0.168	0.345	0.368	0.662	0.940	0.832	0.812	8.705	3.739	0.119	0.127	2.748	3.347	1.151	1.610	0.803	0.387	0.177	0.252	5.169	4.303	0.141	0.214	1.613	0.936	0.078	0.242	1.392	1.732	0.693	0.275	0.076	0.293	0.045	0.043
6264	chr5	51835272	51857839	+	0	NA	Intergenic	Intergenic	-237219	NM_015946	53918	Hs.644352	NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota homolog (Drosophila)	protein-coding	nan	nan	0.640	0.086	0.974	0.494	0.401	0.084	0.043	0.202	0.205	0.359	0.498	0.053	0.125	0.173	0.114	0.438	0.318	1.063	1.533	nan	0.232	0.078	0.034	0.365	0.470	0.258	0.221	nan	0.228	0.049	0.109	0.294	0.436	0.674	2.462	0.618	0.472	7.813	2.631	0.055	0.084	0.401	0.359	0.017	0.036	0.022	0.425
6360	chr5	90932525	90941415	+	0	NA	Intergenic	Intergenic	-257780	NR_138072	57561	Hs.24684	NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding	nan	5.093	0.566	0.079	0.247	0.251	0.188	0.160	0.127	0.035	0.047		0.291	0.061	0.121	0.235	0.133	1.886	0.437	0.288	0.407	0.333	0.121	0.162	0.180	0.446	0.472	0.303	0.333	0.547	0.140	0.079	0.186	0.148	0.182	0.242	nan	0.564	0.351	0.013	0.050	0.010	0.018	0.188			0.332	0.044	0.112
4666	chr2	201848721	201854115	+	0	NA	intron (NM_001321621, intron 10 of 10)	intron (NM_001321621, intron 10 of 10)	-22994	NM_006190	4999	Hs.444870	NM_006190	ENSG00000115942	ORC2	ORC2L	origin recognition complex subunit 2	protein-coding	0.823	nan	0.728	0.096	0.384	0.118	0.047	0.153	0.120	0.071	0.156	0.022	0.338	0.040	0.039	0.451	0.321	8.797	4.041	0.191	0.322	0.248	0.099	0.700	0.664	0.479	0.667	0.302	0.423	0.355	0.121	0.352	0.469	0.087	0.038	0.319	0.679	0.280	0.344	0.061	0.033	0.017	0.161	0.047	0.022		0.057	0.073	0.164
7270	chr7	44428873	44439076	+	0	NA	intron (NM_015332, intron 4 of 5)	intron (NM_015332, intron 4 of 5)	-68744	NM_172078	816	Hs.351887	NM_001220	ENSG00000058404	CAMK2B	CAM2|CAMK2|CAMKB	calcium/calmodulin dependent protein kinase II beta	protein-coding	1.198	2.470	nan	3.904	0.422	0.188	0.375	0.390	0.154	0.774	0.469	1.670	1.421	0.117	0.158	0.517	0.495	0.218	0.459	1.151	1.216	4.861	1.320	0.185	0.247	0.596	0.903	9.634	7.546	0.711	0.569	0.265	0.274	0.531	0.578	0.365	0.606	5.020	1.928	1.905	1.597	0.038	0.085	0.375	1.670	0.125	2.277	0.029	0.099
1797	chr12	6860628	6889245	+	0	NA	promoter-TSS (NM_002824)	promoter-TSS (NM_002824)	-547	NM_002824	5763	Hs.504613	NM_002824	ENSG00000159335	PTMS	ParaT	parathymosin	protein-coding	2.889	nan	nan	3.588	2.567	1.364	2.336	0.564	0.123	1.288	0.798	2.656	5.435	2.880	0.120	1.173	1.542	1.548	2.280	nan	4.848	6.200	2.675	4.036	4.359	2.870	3.861	2.936	3.152	3.879	3.339	1.410	2.572	2.415	2.094	3.573	nan	1.112	0.527	2.953	2.597	1.067	1.894	2.336	2.656	5.618	0.741	1.057	2.873
1119	chr10	60934878	60940473	+	0	NA	intron (NM_001143774, intron 1 of 4)	intron (NM_001143774, intron 1 of 4)	448	NM_001143774	84457	Hs.499704	NM_032439	ENSG00000165443	PHYHIPL	-	phytanoyl-CoA 2-hydroxylase interacting protein like	protein-coding	1.067	nan	0.700	3.423	5.134	2.685	2.036	0.835	0.030	2.119	1.082	2.953	8.296	0.098	0.086	6.852	8.320	0.586	0.727	6.976	5.794	7.631	3.052	0.274	0.454	4.393	5.636	3.866	6.124	4.004	5.147	0.032	0.165	9.324	8.127	8.864	7.190	2.221	1.381	2.097	2.104	1.664	3.405	2.036	2.953	0.017	1.365	0.018	1.805
3039	chr16	4569517	4590381	+	0	NA	intron (NM_001199056, intron 1 of 5)	intron (NM_001199056, intron 1 of 5)	8522	NM_001199054	29965	Hs.654653	NM_013399	ENSG00000089486	CDIP1	C16orf5|CDIP|I1|LITAFL	cell death inducing p53 target 1	protein-coding	2.065	nan	1.840	0.682	0.256	0.130	0.675	0.218	0.127	0.346	0.249	0.528	1.964	0.343	0.072	0.659	0.858	0.292	0.504	1.333	1.018	nan	1.173	0.997	1.006	1.860	nan	0.958	1.210	2.206	2.404	0.210	0.430	1.104	1.141	1.253	2.268	1.417	0.786	2.310	0.869	0.187	0.490	0.675	0.528	1.272	0.480	0.151	0.564
6022	chr4	136129266	136201221	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	644005	NR_103762	100507528	Hs.518987	NR_103762	ENSG00000248330	LINC00613	-	long intergenic non-protein coding RNA 613	ncRNA	nan	nan	0.541	0.116	0.161	0.137	4.657	2.071	0.239	0.054	0.085	0.098	0.158	0.038	0.078	0.196	0.142	0.150	0.337	0.178	0.224	0.183	0.077	0.117	0.123	0.310	0.365	0.179	0.203	0.734	0.436	0.104	0.173	0.170	0.167	0.316	nan	0.098	0.087	0.012	0.022	0.036	0.048	4.657	0.098	0.019	0.013	0.039	0.170
6432	chr5	123790953	123801344	+	0	NA	Intergenic	Intergenic	-21935	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA	nan	1.165	0.900	2.140	3.568	2.020	0.911	0.302	0.047	1.279	0.496	1.235	1.323	0.181	0.088	0.335	0.294	1.496	nan	2.962	2.997	7.092	3.243	0.168	0.232	1.029	1.316	1.074	1.026	0.530	0.336	0.107	0.312	2.364	2.471	0.336	0.924	1.399	0.886	0.621	1.063	0.650	1.153	0.911	1.235	0.019	0.096	0.098	0.274
915	chr1	231661474	231665542	+	0	NA	promoter-TSS (NM_005999)	promoter-TSS (NM_005999)	-891	NR_028395	100303453	Hs.13318	NR_028393	ENSG00000270106	TSNAX-DISC1	-	TSNAX-DISC1 readthrough (NMD candidate)	ncRNA	4.717	3.641	4.000	7.351	5.791	2.730	4.160	3.090	0.239	3.262	1.684	3.166	6.622	2.529	0.130	6.032	6.047	10.801	13.228	8.200	9.048	9.369	7.060	10.509	12.391	3.740	5.017	nan	10.162	5.603	4.983	3.797	3.947	4.522	4.430	5.779	5.764	nan	1.893	2.540	1.377	0.681	1.894	4.160	3.166	0.658	1.617	1.047	1.816
2978	chr15	88286085	88308944	+	0	NA	Intergenic	Intergenic	177354	NR_026869	145978	Hs.350808	NM_152454	ENSG00000259527	LINC00052	NCRNA00052|TMEM83	long intergenic non-protein coding RNA 52	ncRNA	0.450	nan	0.666	0.042	0.295	0.126	0.134	0.079	0.050	0.032	0.091	1.231	0.630	0.038	0.067	0.747	0.465	6.442	4.889	0.607	0.631	0.159	0.069	0.056	0.046	0.284	0.427	2.695	2.197	0.476	0.247	0.181	0.255	0.047	0.033	0.119	0.185	1.329	0.680	0.117	0.117	0.008	0.246	0.134	1.231	0.034	0.129	0.052	0.021
6492	chr5	146045577	146055316	+	0	NA	intron (NM_181675, intron 5 of 9)	MER113|DNA|hAT-Charlie	-154770	NM_194251	134391	Hs.483732	NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|PGR7	G protein-coupled receptor 151	protein-coding	nan	0.950	0.694	0.148	0.422	0.271	0.936	0.068	0.100	0.203	0.245	1.064	0.811	0.068	0.092	0.760	0.457	0.558	0.647	0.697	0.687	3.022	1.325	0.052	0.051	4.849	4.894	0.609	0.506	0.681	0.512	0.106	0.136	0.820	1.189	0.257	0.602	1.099	0.680	0.499	0.704	0.225	0.025	0.936	1.064	0.488	0.324	0.020	0.141
8316	chr9	136465941	136480923	+	0	NA	Intergenic	Intergenic	-28053	NM_000787	1621	Hs.591890	NM_000787	ENSG00000123454	DBH	DBM	dopamine beta-hydroxylase	protein-coding	nan	0.850	1.578	2.006	0.928	0.591	0.512	0.075	0.150	0.631	0.472	1.764	0.925	0.044	0.078	0.261	0.484	0.101	0.098	2.972	3.253	nan	0.384	0.061	0.084	0.057	0.136	3.805	4.049	2.618	2.858	0.370	0.443	0.306	0.231	0.264	0.462	1.807	0.925	5.158	0.651	0.045	0.073	0.512	1.764	0.109	0.796	0.185	0.049
4037	chr19	36656168	36680599	+	0	NA	Intergenic	AluSq2|SINE|Alu	-24612	NM_001864	1346	Hs.421621	NM_001864	ENSG00000161281	COX7A1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit 7A1	protein-coding	1.114	0.869	0.819	1.051	0.882	0.427	0.286	0.195	0.290	0.191	0.208	2.380	2.393	3.301	0.266	0.443	0.563	1.863	1.907	0.903	0.897	3.000	1.068	0.652	0.679	0.379	0.670	0.373	0.547	nan	1.078	0.485	0.628	0.271	0.231	0.883	1.874	1.769	1.009	0.135	0.130	0.031	0.545	0.286	2.380	0.089	0.117	0.150	0.628
2606	chr14	57044922	57061294	+	0	NA	intron (NM_017799, intron 3 of 15)	intron (NM_017799, intron 3 of 15)	6597	NM_017799	54916	Hs.497253	NM_017799	ENSG00000070269	TMEM260	C14orf101	transmembrane protein 260	protein-coding	nan	nan	2.937	3.022	8.639	4.691	2.139	0.454	0.088	0.863	0.495	3.041	1.774	0.475	0.151	2.144	1.783	3.239	2.742	2.934	2.950	2.963	1.313	7.922	8.705	0.751	0.959	1.687	2.680	2.791	1.870	2.026	2.058	3.731	5.993	4.641	7.999	nan	0.920	1.020	1.306	0.473	0.899	2.139	3.041	0.274	0.514	0.315	1.354
6811	chr6	52854637	52861532	+	0	NA	intron (NM_001512, intron 2 of 6)	L1MC3|LINE|L1	2094	NM_001512	2941	Hs.485557	NM_001512	ENSG00000170899	GSTA4	GSTA4-4|GTA4	glutathione S-transferase alpha 4	protein-coding	4.951	2.655	nan	1.967	2.118	0.932	2.254	2.366	0.327	2.092	1.292	2.801	6.225	2.683	0.125	8.521	11.834	9.516	7.535	6.289	5.647	7.811	4.017	5.754	6.642	3.785	4.275	9.069	10.408	6.782	7.560	3.750	5.828	5.540	6.494	5.651	5.821	4.175	2.127	2.409	1.734	1.139	1.275	2.254	2.801	0.664	2.159	1.618	2.391
1551	chr11	82440445	82445486	+	0	NA	TTS (NM_175885)	TTS (NM_175885)	1941	NM_175885	220382	Hs.448218	NM_175885	ENSG00000182103	FAM181B	-	family with sequence similarity 181 member B	protein-coding	0.494	0.598	0.572	0.630	0.337	0.158	0.403	0.059	0.032	0.312	0.136		2.158	0.321	0.108	0.552	0.586	0.252	0.549	0.745	0.417	0.555	0.154	2.138	1.731	7.519	9.473	1.093	1.908	0.605	0.489	0.186	0.696	0.233	0.280	0.170	0.292	1.162	0.875	0.055	0.233	0.093	0.287	0.403		0.019		0.040	0.049
3981	chr19	13946341	13977625	+	0	NA	Intergenic	Intergenic	-14510	NR_029495	407010		NR_029495	ENSG00000207980	MIR23A	MIRN23A|hsa-mir-23a|miRNA23A|mir-23a	microRNA 23a	ncRNA	3.454	2.399	2.466	1.093	2.133	1.284	3.613	2.883	0.597	1.415	0.407	3.034	2.513	5.937	0.189	1.033	2.220	2.014	4.244	2.399	2.215	3.990	2.851	1.799	1.844	1.789	2.355	3.243	5.673	1.493	1.125	0.448	0.595	4.059	3.966	1.672	2.196	1.836	1.368	1.144	0.419	0.814	0.394	3.613	3.034	0.744	3.004	0.287	0.505
6857	chr6	80230231	80263224	+	0	NA	intron (NM_181714, intron 1 of 8)	intron (NM_181714, intron 1 of 8)	420	NM_181714	167691	Hs.21945	NM_181714	ENSG00000135338	LCA5	C6orf152	LCA5, lebercilin	protein-coding	1.679	1.685	nan	0.820	1.956	0.968	1.024	0.410	0.146	0.532	0.351	1.160	2.455	4.874	0.175	0.692	0.840	1.967	4.495	1.873	1.799	2.078	1.546	0.529	0.564	1.659	1.907	1.101	1.621	1.851	1.522	0.477	1.031	2.772	2.982	0.527	1.135	1.146	0.624	0.987	0.614	0.689	0.912	1.024	1.160	0.147	0.859	0.449	0.165
4607	chr2	176030181	176036036	+	0	NA	promoter-TSS (NR_045772)	promoter-TSS (NR_045772)	-174	NM_001880	1386	Hs.592510	NM_001880	ENSG00000115966	ATF2	CRE-BP1|CREB-2|CREB2|HB16|TREB7	activating transcription factor 2	protein-coding	4.405	2.648	2.805	2.952	3.838	2.132	2.334	2.349	0.193	1.197	0.851	2.546	9.572	2.347	0.112	2.368	3.404	4.250	5.048	4.789	4.218	3.870	1.908	8.918	9.015	3.421	3.969	9.601	18.325	5.628	5.627	2.016	4.183	2.100	2.121	6.141	5.876	1.563	0.806	2.855	2.003	0.409	1.666	2.334	2.546	0.761	0.771	1.538	2.131
8188	chr9	90078260	90082607	+	0	NA	Intergenic	AluY|SINE|Alu	-31710	NM_001288731	1612	Hs.380277	NM_004938	ENSG00000196730	DAPK1	DAPK	death associated protein kinase 1	protein-coding	0.581	nan	0.560	0.081	0.279	0.110	0.117	1.385	0.110	0.190	0.281	0.211	0.279	0.049	0.103	1.729	2.064	9.891	8.671	0.366	0.352	0.090	0.084	0.843	0.840	0.080	0.089	0.204	0.190	0.282	0.113	0.546	1.186	0.201	0.396	0.085	0.228	1.276	0.892	0.026	0.021	0.089	0.018	0.117	0.211		0.024	0.545	0.028
5042	chr20	61605456	61618006	+	0	NA	Intergenic	Intergenic	26656	NM_080606	128408	Hs.551230	NM_080606	ENSG00000125533	BHLHE23	BETA4|BHLHB4|Beta3b|bA305P22.3	basic helix-loop-helix family member e23	protein-coding	1.306	2.110	3.413	0.171	0.839	0.485	2.006	0.084	0.025	0.264	0.304	5.976	0.715	0.096	0.074	1.664	nan	0.157	0.239	2.068	1.680	0.771	0.235	0.439	0.467	0.186	0.355	0.216	0.251	2.145	2.384	0.682	0.839	0.381	0.247	0.214	0.261	1.534	1.111	0.921	0.341	0.076	0.254	2.006	5.976	0.291	0.120	0.221	0.117
561	chr1	154703010	154725541	+	0	NA	intron (NM_001204087, intron 3 of 8)	intron (NM_001204087, intron 3 of 8)	-113819	NM_001025107	103	Hs.12341	NM_001111	ENSG00000160710	ADAR	ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136	adenosine deaminase, RNA specific	protein-coding	nan	nan	2.349	0.284	1.009	0.647	2.253	0.099	0.079	0.389	0.192	0.262	4.004	0.055	0.099	0.680	0.966	0.378	0.662	2.265	nan	2.277	0.658	0.206	0.191	0.541	0.968	2.967	4.058	0.893	0.708	0.889	1.150	0.452	0.750	0.511	0.830	0.996	0.783	1.087	2.428	0.076	0.103	2.253	0.262	0.233	0.413	0.215	0.083
2112	chr12	104304664	104311738	+	0	NA	intron (NR_027249, intron 2 of 15)	MIRb|SINE|MIR	15788	NR_027249	253724	Hs.506549	NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo	0.940	0.801	nan	0.549	0.529	0.431	1.207	0.174	0.228	0.467	0.312	3.932	0.273	0.154	0.156	2.115	1.735	0.256	0.398	2.094	2.554	10.368	3.843	0.970	1.215	0.528	0.799	0.599	0.449	1.902	2.047	0.191	0.330	1.136	0.455	0.250	0.505	1.955	1.217	0.042	0.225	0.204	0.755	1.207	3.932	0.398	0.270	0.069	0.105
6478	chr5	141217968	141247500	+	0	NA	TTS (NM_032420)	TTS (NM_032420)	13033	NM_001278615	5097	Hs.79769	NM_002587	ENSG00000156453	PCDH1	PC42|PCDH42	protocadherin 1	protein-coding	nan	1.517	0.934	0.899	1.936	0.987	0.811	0.718	0.136	0.296	0.165	1.729	2.574	0.793	0.094	1.244	1.314	1.108	2.130	2.110	1.820	1.106	0.485	1.162	1.306	0.724	1.060	3.659	4.501	0.931	0.747	0.917	1.352	0.314	0.269	0.411	0.915	0.985	0.640	1.089	0.832	0.067	0.272	0.811	1.729	0.351	0.653	0.555	0.163
2221	chr12	133335944	133340328	+	0	NA	intron (NM_015114, intron 1 of 12)	CpG	338	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding	4.053	3.483	2.847	3.822	4.703	2.888	3.784	2.707	0.693	2.465	1.424	4.571	6.682	4.140	0.183	3.984	5.068	8.241	11.402	8.497	8.653	6.131	5.073	11.519	10.397	3.332	4.567	nan	14.026	6.130	6.617	3.689	7.367	5.434	6.476	7.307	5.145	3.445	1.878	3.170	4.335	1.344	21.437	3.784	4.571	1.147	2.523	1.412	1.298
2982	chr15	89901697	89956988	+	0	NA	intron (NR_133001, intron 3 of 6)	intron (NR_133001, intron 3 of 6)	8069	NR_015411	254559	Hs.136313	NR_015411	ENSG00000255571	MIR9-3HG	LINC00925	MIR9-3 host gene	ncRNA	1.223	nan	0.539	0.278	1.807	0.872	1.215	0.239	0.064	0.669	0.422	2.152	1.838	0.367	0.071	4.318	5.666	2.347	1.622	2.141	1.785	0.777	0.267	0.105	0.124	0.920	1.341	0.893	1.298	2.059	2.077	1.496	2.466	0.474	0.350	0.767	1.816	0.839	0.504	0.516	0.639	0.105	0.386	1.215	2.152	0.467	0.270	0.961	0.255
1307	chr11	12107003	12118180	+	0	NA	Intergenic	Intergenic	-19532	NM_001346299	9645	Hs.501928	NM_014632	ENSG00000133816	MICAL2	MICAL-2|MICAL2PV1|MICAL2PV2	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	1.209	nan	1.280	1.217	0.576	0.359	1.073	1.808	0.114	0.112	0.192	0.831	10.054	0.020	0.043	nan	1.932	0.435	0.702	1.935	2.049	7.330	1.310	0.878	0.926	0.404	nan	1.318	1.017	1.349	1.487	0.681	0.918	4.863	5.871	0.461	1.344	0.847	nan	4.154	1.311	1.392	0.149	1.073	0.831	0.182	0.140	0.301	0.767
1812	chr12	8111722	8130728	+	0	NA	Intergenic	AluSx3|SINE|Alu	-32333	NM_006931	6515	Hs.419240	NM_006931	ENSG00000059804	SLC2A3	GLUT3	solute carrier family 2 member 3	protein-coding	0.801	nan	nan	0.152	1.108	0.688	1.187	0.090	0.076	0.091	0.173	0.044	1.367	5.006	0.327	0.254	0.387	0.427	0.824	nan	3.040	0.293	0.154	0.580	0.596	0.503	0.625	0.091	0.115	1.521	1.928	0.511	0.588	0.112	0.117	0.748	nan	0.123	0.236	0.644	0.065	0.030	0.096	1.187	0.044	1.753	0.032	0.296	1.180
1769	chr12	3308206	3362853	+	0	NA	intron (NM_006675, intron 3 of 8)	intron (NM_006675, intron 3 of 8)	149008	NM_006675	10867	Hs.504517	NM_006675	ENSG00000011105	TSPAN9	NET-5|NET5|PP1057	tetraspanin 9	protein-coding	1.933	nan	nan	0.535	0.422	0.232	0.568	0.175	0.081	0.333	0.287	0.257	2.829	0.097	0.103	0.260	0.337	0.208	0.353	nan	0.805	1.900	0.526	0.418	0.443	0.905	1.319	0.785	1.040	4.242	4.825	0.324	0.427	1.214	0.990	1.941	nan	2.363	1.285	3.123	0.415	0.330	0.127	0.568	0.257	2.012	0.902	0.060	1.666
1875	chr12	25537094	25540981	+	0	NA	Intergenic	CpG	-135172	NM_033360	3845	Hs.505033	NM_004985	ENSG00000133703	KRAS	C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2	KRAS proto-oncogene, GTPase	protein-coding	nan	nan	5.769	3.906	1.454	0.937	2.738	1.873	0.082	2.368	0.888	1.630	11.203	7.914	0.199	2.008	2.250	9.746	13.018	1.667	1.010	4.665	3.705	25.206	27.339	1.477	1.953	3.902	7.484	3.309	2.789	1.212	2.840	1.924	2.946	5.282	6.207	3.626	2.211	0.442	1.628	0.344	1.330	2.738	1.630	0.272	4.550	0.765	1.916
7148	chr7	7817877	7850336	+	0	NA	intron (NM_001302350, intron 3 of 4)	MER4D|LTR|ERV1	-75868	NM_002947	6119	Hs.487540	NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding	1.663	1.345	1.532	0.286	0.606	0.262	0.162	0.152	0.124	0.391	0.186	0.753	nan	0.110	0.171	0.583	0.458	0.314	nan	0.573	0.856	nan	0.374	0.492	0.449	1.327	1.669	nan	0.563	0.769	0.509	0.169	0.269	0.387	0.855	1.669	4.377	0.704	0.628	0.094	0.076	0.056	0.117	0.162	0.753	0.069	0.359	0.098	1.493
5087	chr21	30584752	30611062	+	0	NA	intron (NR_027072, intron 1 of 1)	intron (NR_027072, intron 1 of 1)	32092	NR_027072	193629	Hs.720711	NM_138968	ENSG00000215533	LINC00189	C21orf109|NCRNA00189	long intergenic non-protein coding RNA 189	ncRNA	1.352	0.915	2.269	0.401	0.409	0.207	0.159	0.191	0.073	0.114	0.082	0.227	1.339	0.025	0.067	0.398	0.300	0.317	0.879	0.414	0.452	0.486	0.146	0.200	0.189	0.661	1.071	1.067	0.501	1.350	0.915	0.362	0.482	0.318	0.568	1.483	4.862	nan	0.876	0.027	0.040	0.059	0.014	0.159	0.227	0.044	0.120	0.187	1.105
1673	chr11	116447051	116454648	+	0	NA	Intergenic	CpG	-59290	NR_135069	101929011	Hs.733911	NR_135069	ENSG00000237937	LOC101929011	-	uncharacterized LOC101929011	ncRNA	0.902	1.326	0.643	0.461	1.036	0.654	0.338	0.020	0.022	2.993	1.293	2.296	0.810	0.086	0.057	0.186	nan	0.147	0.201	0.408	0.387	2.284	0.634	0.073	0.088	3.127	nan	0.533	0.612	2.569	1.709	0.430	0.545	5.218	3.792	0.341	0.801	5.430	2.885	1.842	0.134	1.416	0.042	0.338	2.296	0.180	0.093	0.079	0.605
4027	chr19	35079320	35090960	+	0	NA	exon (NM_001025591, exon 2 of 3)	exon (NM_001025591, exon 2 of 3)	350	NM_001025591	284402	Hs.656990	NM_001025591	ENSG00000205209	SCGB2B2	SCGB4A2|SCGBL	secretoglobin family 2B member 2	protein-coding	0.627	0.542	1.124	0.476	0.183	0.042	0.130	0.086	0.112	0.067	0.115	0.051	0.787	0.019	0.069	0.247	0.194	0.238	0.285	0.411	0.300	0.285	0.114	0.289	0.311	0.308	0.424	0.149	0.187	nan	0.211	0.279	0.317	0.112	0.127	0.112	0.169	3.316	1.705	0.057	0.062	0.025	0.006	0.130	0.051	0.003	0.283	0.059	0.043
6707	chr6	31761112	31765596	+	0	NA	5' UTR (NM_006295, exon 1 of 30).5	5' UTR (NM_006295, exon 1 of 30).5	358	NM_006295	7407	Hs.520026	NM_006295	ENSG00000204394	VARS	G7A|VARS1|VARS2	valyl-tRNA synthetase	protein-coding	nan	2.411	nan	3.956	3.627	2.142	10.969	3.497	0.600	2.620	1.049	7.747	4.226	5.462	0.235	8.079	6.762	5.083	nan	nan	7.586	6.937	4.096	15.023	15.562	4.065	6.098	10.203	12.825	7.663	7.125	4.505	7.255	6.907	7.560	5.759	7.542	4.515	2.141	2.050	3.895	1.606	1.910	10.969	7.747	2.759	3.152	1.104	3.263
5582	chr3	141090775	141134139	+	0	NA	intron (NM_001080412, intron 5 of 7)	intron (NM_001080412, intron 5 of 7)	69402	NM_001080412	253461	Hs.518301	NM_152535	ENSG00000177311	ZBTB38	CIBZ|PPP1R171|ZNF921	zinc finger and BTB domain containing 38	protein-coding	1.901	nan	nan	0.662	2.114	1.124	1.176	2.000	0.204	1.928	1.223	1.617	0.554	0.242	0.082	2.828	3.973	1.939	2.707	0.598	0.649	nan	2.837	0.630	0.575	1.081	nan	0.763	nan	nan	1.250	2.160	2.780	1.677	1.760	1.335	3.393	2.480	1.481	0.209	1.520	0.396	0.966	1.176	1.617	0.083	0.986	1.955	0.812
8003	chr8	145686766	145693230	+	0	NA	intron (NM_138496, intron 1 of 4)	intron (NM_138496, intron 1 of 4)	420	NM_138496	50626	Hs.459379	NM_032687	ENSG00000187954	CYHR1	CHRP	cysteine and histidine rich 1	protein-coding	3.374	1.851	nan	4.337	2.859	1.766	1.912	1.241	0.150	0.871	0.231	5.626	12.305	1.559	0.079	2.147	2.967	3.237	4.619	nan	5.929	nan	1.099	6.750	6.155	1.679	2.506	2.897	4.062	1.976	1.743	2.465	3.679	1.902	1.859	1.812	2.694	1.429	0.586	2.772	4.818	0.380	1.035	1.912	5.626	0.972	2.850	1.522	0.810
6367	chr5	93123240	93146309	+	0	NA	intron (NM_032042, intron 8 of 10)	intron (NM_032042, intron 8 of 10)	-57465	NM_153216	134187	Hs.678995	NM_153216	ENSG00000248483	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding	nan	4.159	1.208	0.103	0.472	0.288	2.879	0.231	0.083	0.218	0.124		0.324	0.555	0.150	0.240	0.202	0.255	0.342	0.281	0.343	2.351	0.797	0.297	0.289	0.813	1.051	0.878	0.654	0.535	0.220	0.124	0.198	5.855	8.606	0.281	nan	1.577	0.697	0.061	0.290	1.541	0.101	2.879		0.042	0.453	0.074	0.097
7236	chr7	30173261	30229850	+	0	NA	3' UTR (NM_152793, exon 3 of 3)	3' UTR (NM_152793, exon 3 of 3)	27003	NM_152793	222166	Hs.200100	NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding	2.197	2.624	3.719	0.993	4.066	2.106	2.810	0.428	0.100	1.297	0.841	6.445	3.914	0.254	0.132	1.098	1.267	0.743	1.191	3.074	nan	2.720	0.887	0.820	0.855	1.646	nan	nan	nan	0.744	0.612	0.643	1.077	3.395	4.257	0.644	nan	1.713	1.100	1.344	1.604	1.124	0.739	2.810	6.445	0.266	0.543	0.528	0.232
5169	chr21	46150727	46166635	+	0	NA	Intergenic	Intergenic	-27186	NM_001272037	54084	Hs.660703	NM_144991	ENSG00000175894	TSPEAR	C21orf29|DFNB98|TSP-EAR	thrombospondin type laminin G domain and EAR repeats	protein-coding	nan	1.014	2.026	0.072	0.541	0.333	0.305	0.061	0.081	0.118	0.092	0.202	0.663	0.027	0.066	0.337	0.194	0.231	0.199	0.400	0.450	nan	0.301	0.128	0.150	0.156	nan	0.299	0.400	1.050	0.920	0.164	0.159	1.322	0.995	0.396	0.918	3.690	1.854	0.063	0.206	0.174	0.049	0.305	0.202	0.159	2.869	0.038	0.156
7721	chr8	65285210	65291647	+	0	NA	intron (NR_109792, intron 1 of 2)	intron (NR_109792, intron 1 of 2)	-1456	NR_034103	100130155	Hs.7023	NR_034102	ENSG00000254377	MIR124-2HG	LINC00966	MIR124-2 host gene	ncRNA	1.029	0.563	0.790	0.063	0.126	0.012	0.060	0.059	0.125	0.217	0.191	0.075	0.350	0.034	0.120	0.282	0.642	0.102	0.119	0.313	0.292	0.209	0.104	0.042	0.038	0.086	nan	0.100	0.080	nan	3.268	0.392	0.669	0.299	0.258	4.548	3.121	0.348	0.423	0.017	0.042	0.014	0.023	0.060	0.075		0.015	0.123	7.935
7765	chr8	80864322	80879893	+	0	NA	intron (NM_014018, intron 2 of 2)	intron (NM_014018, intron 2 of 2)	70399	NM_014018	28957	Hs.521124	NM_014018	ENSG00000147586	MRPS28	HSPC007|MRP-S28|MRP-S35|MRPS35	mitochondrial ribosomal protein S28	protein-coding	1.652	nan	nan	3.266	3.127	1.696	1.192	0.505	0.072	0.906	0.479	2.397	1.960	1.246	0.086	0.479	0.412	0.341	0.662	2.243	1.959	5.288	2.025	0.293	0.291	1.579	1.826	nan	2.452	1.626	1.195	0.297	0.546	3.596	5.612	0.881	2.156	2.621	1.557	0.194	0.162	1.162	0.318	1.192	2.397	0.352	0.711	0.126	0.436
1569	chr11	92058997	92066017	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-22755	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10|hFat3	FAT atypical cadherin 3	protein-coding	0.719	nan	0.548	0.255	0.275	0.092	0.147	0.396		0.152	0.095	0.089	0.743	0.263	0.093	11.168	10.334	2.988	nan	0.735	0.757	0.176	0.103	3.652	3.687	1.114	1.255	1.105	0.909	0.464	0.384	1.756	2.822	1.678	1.731	0.313	nan	1.018	0.777	0.126	0.127	0.392	0.067	0.147	0.089	0.029	0.188	1.244	0.214
6244	chr5	42977895	43022120	+	0	NA	Intergenic	Intergenic	-6572	NR_104643	643977	Hs.535791	NR_104643		FLJ32255	-	uncharacterized LOC643977	ncRNA	1.260	3.481	1.628	5.654	1.287	0.697	0.774	2.496	0.527	1.067	0.798	1.572	7.858	1.379	0.129	0.268	0.223	0.803	1.318	3.534	2.676	0.789	0.210	0.423	0.398	1.060	1.332	1.349	1.628	1.164	0.867	0.937	1.678	0.176	0.200	0.406	0.746	0.501	0.439	1.864	4.900	0.034	0.406	0.774	1.572	1.056	2.588	0.993	0.191
7915	chr8	125573818	125588578	+	0	NA	intron (NM_014751, intron 6 of 13)	intron (NM_014751, intron 6 of 13)	29855	NM_001278645	4715	Hs.15977	NM_005005	ENSG00000147684	NDUFB9	B22|CI-B22|LYRM3|UQOR22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding	nan	nan	nan	1.835	1.581	0.763	0.333	0.151	0.087	0.263	0.164	2.564	nan	0.022	0.083	0.314	0.436	0.248	0.420	1.034	1.202	7.316	2.335	nan	nan	0.439	0.708	2.290	2.140	0.479	0.285	0.328	0.437	0.294	0.367	0.319	0.689	1.333	0.812	0.268	0.492	0.060	0.069	0.333	2.564	0.092	1.261	0.073	0.145
2542	chr14	33738423	33780918	+	0	NA	intron (NM_173159, intron 3 of 11)	intron (NM_173159, intron 3 of 11)	351211	NM_173159	64067	Hs.657892	NM_022123	ENSG00000151322	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding	1.539	0.738	0.918	0.154	0.241	0.126	0.236	0.236	0.121	0.111	0.119	0.281	0.331	1.898	0.116	0.214	0.153	0.261	0.917	0.353	0.366	0.131	0.077	0.235	0.203	0.166	0.298	0.329	0.386	0.619	0.266	0.157	0.288	0.101	0.113	0.226	0.457	0.442	0.563	0.036	0.134	0.015	0.124	0.236	0.281	0.050	0.150	0.063	0.088
6001	chr4	117127514	117162414	+	0	NA	Intergenic	L1MC3|LINE|L1	-75917	NR_031737	100302290		NR_031737	ENSG00000270394	MIR1973	hsa-mir-1973|mir-1973	microRNA 1973	ncRNA	0.520	0.648	0.523	0.106	0.150	0.074	0.055	0.092	0.092	0.029	0.076	0.086	0.162	0.037	0.066	0.208	0.146	0.166	0.226	0.119	0.160	0.166	0.080	0.083	0.114	4.334	4.750	0.210	0.195	0.303	0.128	0.116	0.172	0.059	0.071	0.231	0.478	0.243	0.249	0.016	0.028	0.014	0.050	0.055	0.086	0.007	0.043	0.029	0.078
6289	chr5	59775458	59794620	+	0	NA	intron (NR_024617, intron 1 of 3)	intron (NR_024617, intron 1 of 3)	-1114	NM_001165899	5144	Hs.117545	NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding	nan	nan	0.857	0.070	0.163	0.147	0.148	0.106	0.092	0.098	0.089	0.169	0.311	0.051	0.099	0.218	0.151	0.397	0.599	0.295	0.356	nan	0.107	0.162	0.147	3.537	4.117	0.529	0.665	nan	0.117	0.074	0.240	0.088	0.127	0.189	0.338	0.199	0.286	0.655	0.092	0.030	0.141	0.148	0.169	0.005	0.312	0.077	0.078
530	chr1	150532256	150553803	+	0	NA	intron (NR_104133, intron 2 of 3)	intron (NR_104133, intron 2 of 3)	3999	NR_104133	574406	Hs.516243	NM_001025493	ENSG00000203804	ADAMTSL4-AS1	C1orf138	ADAMTSL4 antisense RNA 1	ncRNA	nan	nan	4.551	2.314	2.650	1.378	2.405	3.214	0.692	2.905	1.271	2.320	7.691	5.332	0.179	3.054	3.764	5.444	11.249	5.490	nan	3.991	1.733	7.537	7.882	2.996	3.657	4.538	7.240	3.481	3.267	3.197	6.133	2.805	3.514	3.542	4.248	2.409	1.208	1.340	2.631	0.721	1.898	2.405	2.320	0.672	4.210	2.912	1.049
3805	chr18	48143919	48166773	+	0	NA	intron (NM_001292039, intron 1 of 4)	intron (NM_001292039, intron 1 of 4)	68862	NM_001292039	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK	mitogen-activated protein kinase 4	protein-coding	nan	1.134	0.830	0.534	0.621	0.260	1.279	0.062	0.036	0.206	0.177	1.190	1.622	0.024	0.087	0.569	0.502	0.303	0.435	2.167	3.111	1.626	0.622	0.170	0.179	0.206	0.342	1.841	1.736	0.504	0.334	0.307	0.514	1.090	0.638	0.314	nan	3.826	2.255	4.840	0.905	0.150	0.062	1.279	1.190	0.101	0.035	0.372	0.206
3067	chr16	16642900	16671681	+	0	NA	Intergenic	Intergenic	184188	NM_001282507	101059938	Hs.634612	NM_001282507	ENSG00000214967	NPIPA7	-	nuclear pore complex interacting protein family member A7	protein-coding	1.057	1.253	nan	1.703	0.334	0.150	0.685	0.095	0.089	0.267	0.225	0.054	5.882	0.072	0.097	0.370	0.373	0.187	0.109	1.102	1.222	0.320	0.133	0.163	0.152	0.266	0.559	4.841	6.269	nan	0.633	0.124	0.190	0.714	0.865	0.321	0.645	1.460	0.684	0.400	0.589	0.332	0.898	0.685	0.054	0.309	0.346	0.041	0.344
7971	chr8	142397655	142431817	+	0	NA	Intergenic	Intergenic	-16752	NM_007079	11156	Hs.43666	NM_007079	ENSG00000184489	PTP4A3	PRL-3|PRL-R|PRL3	protein tyrosine phosphatase type IVA, member 3	protein-coding	3.070	0.740	nan	1.567	1.450	0.892	0.784	1.182	0.213	0.847	0.428	2.714	3.999	0.599	0.054	1.500	1.915	0.504	0.703	nan	4.579	nan	0.812	5.026	5.104	0.785	1.088	5.971	8.743	3.430	3.155	1.241	1.507	1.226	1.163	1.204	1.825	2.321	1.200	4.549	3.420	0.300	0.145	0.784	2.714	0.804	1.530	0.359	0.666
470	chr1	117523439	117534793	+	0	NA	intron (NM_020440, intron 8 of 8)	intron (NM_020440, intron 8 of 8)	-15256	NM_004258	9398	Hs.654598	NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding	nan	1.927	4.430	0.131	0.719	0.430	0.283	0.789	0.171	0.466	0.203	0.509	0.381	0.048	0.102	0.367	0.345	0.417	0.583	0.363	nan	7.058	1.596	0.173	0.167	2.602	3.823	0.320	0.398	0.289	0.198	0.261	0.538	0.205	0.272	0.314	0.805	2.006	1.033	0.015	0.125	0.041	0.131	0.283	0.509	0.646	0.089	0.061	0.184
1524	chr11	74344931	74362855	+	0	NA	non-coding (NR_046409, exon 11 of 11)	non-coding (NR_046409, exon 11 of 11)	50243	NR_046410	10714	Hs.82502	NM_006591	ENSG00000077514	POLD3	P66|P68|PPP1R128	DNA polymerase delta 3, accessory subunit	protein-coding	nan	0.898	0.731	0.225	0.341	0.223	0.788	0.182	0.127	0.457	0.249	0.573	0.393	0.095	0.133	0.458	0.545	0.377	0.644	1.468	1.857	1.135	0.319	0.755	0.755	0.602	0.904	0.560	0.673	0.389	0.191	0.301	0.469	0.690	1.302	0.548	1.891	1.905	0.981	4.195	0.644	0.107	0.278	0.788	0.573	0.016	0.212	0.078	0.294
4142	chr19	50594190	50643178	+	0	NA	Intergenic	AluSx|SINE|Alu	2413	NR_024228	100169958	Hs.723094	NR_024228		SNAR-A8	-	small ILF3/NF90-associated RNA A8	snRNA	1.811	1.573	1.669	0.220	1.257	0.636	0.374	0.183	0.315	0.233	0.292	0.163	0.510	12.447	0.939	0.488	0.328	0.278	0.341	0.649	0.915	1.659	0.444	0.712	0.677	0.499	0.894	0.665	0.691	1.240	0.421	0.369	0.523	0.226	0.447	0.628	1.335	0.773	0.833	0.089	0.166	0.113	0.087	0.374	0.163	0.152	0.356	0.095	0.270
6652	chr6	20862707	20911778	+	0	NA	intron (NM_017774, intron 9 of 15)	L1ME2z|LINE|L1	352554	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding	1.186	1.485	nan	1.994	4.607	2.251	0.827	0.435	0.114	0.551	0.492	3.475	nan	0.060	0.102	0.593	0.457	1.048	nan	1.126	1.427	nan	0.518	0.994	1.005	1.141	1.369	2.162	2.365	1.483	1.095	0.232	0.372	1.836	3.250	0.416	1.192	1.240	0.644	2.768	0.863	0.621	0.151	0.827	3.475	0.183	0.103	0.085	0.214
5142	chr21	43722093	43742142	+	0	NA	3' UTR (NM_003226, exon 3 of 3)	3' UTR (NM_003226, exon 3 of 3)	3589	NM_003226	7033	Hs.82961	NM_003226	ENSG00000160180	TFF3	ITF|P1B|TFI	trefoil factor 3	protein-coding	nan	1.366	3.810	3.982	1.219	0.608	0.340	0.056	0.056	1.100	0.833	3.598	5.963	0.049	0.060	1.165	2.112	0.573	0.500	6.481	6.329	nan	1.334	2.594	2.692	0.152	nan	4.554	4.244	1.498	1.700	2.110	3.176	1.258	1.015	0.309	0.426	2.215	1.330	2.061	1.467	0.319	0.135	0.340	3.598	0.577	1.230	2.414	0.149
2360	chr13	86209736	86221973	+	0	NA	Intergenic	Intergenic	157629	NM_032229	84189	Hs.525105	NM_032229	ENSG00000184564	SLITRK6	DFNMYP	SLIT and NTRK like family member 6	protein-coding	nan	nan	0.504	0.208	0.159	0.092	0.261	0.104	0.066	0.585	0.527	0.108	0.293	0.026	0.075	0.506	0.276	0.202	0.279	0.333	0.304	6.334	2.303	0.118	0.113	0.059	0.081	0.464	0.439	0.283	0.147	0.168	0.244	0.629	0.279	0.291	0.480	0.112	0.103	0.027	0.051	0.046	0.143	0.261	0.108		0.075	0.040	0.034
654	chr1	169854159	169864368	+	0	NA	intron (NM_181093, intron 1 of 13)	Charlie8|DNA|hAT-Charlie	3837	NM_181093	57147	Hs.435560	NM_020423	ENSG00000000457	SCYL3	PACE-1|PACE1	SCY1 like pseudokinase 3	protein-coding	2.810	nan	3.106	1.970	1.753	0.880	1.696	1.661	0.283	1.455	0.623	1.979	4.706	1.750	0.149	3.207	3.546	5.647	9.769	5.035	nan	3.180	2.477	2.980	3.515	2.310	2.777	4.158	nan	2.837	2.892	3.946	5.473	2.710	2.634	3.471	3.540	1.918	0.963	1.022	2.618	0.448	0.741	1.696	1.979	0.454	1.279	1.479	1.082
2403	chr13	101039306	101053734	+	0	NA	intron (NM_001127692, intron 18 of 22)	intron (NM_001127692, intron 18 of 22)	86749	NR_047686	100885777	Hs.662554	NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA	0.854	1.418	0.893	0.226	0.410	0.145	1.382	1.330	0.146	0.188	0.113	0.347	0.424	0.158	0.076	0.726	0.383	0.263	0.357	0.609	0.660	2.182	0.483	0.161	0.160	0.448	nan	0.295	0.332	0.350	0.194	0.178	0.373	2.951	5.697	0.396	nan	0.308	0.272	0.667	0.174	0.855	0.137	1.382	0.347	0.243	0.190	0.061	0.076
2261	chr13	31397028	31411871	+	0	NA	Intergenic	Intergenic	27106	NR_047012	100874158	Hs.577982	NR_047012	ENSG00000237879	LINC00398	-	long intergenic non-protein coding RNA 398	ncRNA	1.231	1.661	0.950	0.943	0.188	0.065	0.759	0.172	0.108	0.328	0.149	1.007	1.907	0.059	0.069	5.214	6.410	1.849	2.852	1.819	2.080	0.771	0.130	0.964	0.876	0.187	0.446	0.841	1.430	1.412	1.161	7.548	9.906	0.622	0.902	0.593	1.220	0.909	0.572	0.680	0.490	0.115	0.398	0.759	1.007	0.287	0.247	8.568	0.199
156	chr1	27012315	27033755	+	0	NA	exon (NM_006015, exon 1 of 20)	exon (NM_006015, exon 1 of 20)	513	NM_139135	8289	Hs.468972	NM_006015	ENSG00000117713	ARID1A	B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1	AT-rich interaction domain 1A	protein-coding	4.901	2.925	nan	5.119	3.381	1.845	2.943	1.867	0.174	1.334	0.605	1.808	6.220	5.596	0.183	3.588	3.670	3.916	5.437	7.542	6.641	3.701	1.413	9.529	9.819	4.246	5.541	4.273	6.271	4.566	5.172	3.061	5.470	2.805	2.700	4.868	5.952	2.047	1.175	3.189	3.723	0.609	2.076	2.943	1.808	1.152	1.368	2.825	2.155
3993	chr19	18153090	18161380	+	0	NA	Intergenic	L2a|LINE|L2	38258	NM_001286826	27106	Hs.515249	NM_015683	ENSG00000105643	ARRDC2	CLONE24945|PP2703	arrestin domain containing 2	protein-coding	4.587	1.650	2.449	0.464	0.411	0.251	0.298	0.272	0.370	0.209	0.272	0.231	0.521	0.104	0.106	0.264	0.188	0.308	0.772	0.850	0.832	0.674	0.241	0.230	0.198	3.286	4.436	2.987	4.089	8.250	7.998	0.250	0.209	1.011	1.728	4.071	9.341	2.036	1.073	0.448	0.278	0.324	0.095	0.298	0.231	2.035	1.007	0.060	4.688
6324	chr5	72560139	72581317	+	0	NA	Intergenic	Intergenic	-72940	NR_134291	340090	Hs.434311	NR_134291		LOC340090	-	uncharacterized LOC340090	ncRNA	1.357	nan	4.764	0.245	0.260	0.177	0.804	0.184	0.075	0.059	0.061	0.271	0.552	0.056	0.105	0.268	0.329	0.326	0.563	0.280	0.312	nan	0.413	0.129	0.140	0.656	nan	0.351	0.551	3.109	3.063	0.169	0.196	0.186	0.219	0.289	0.721	0.332	0.348	0.222	0.180	0.036	0.052	0.804	0.271	0.456	0.298	0.107	0.181
7150	chr7	8006856	8013980	+	0	NA	intron (NM_138426, intron 1 of 7)	intron (NM_138426, intron 1 of 7)	-2035	NR_110018	100505921	Hs.634989	NR_110018		LOC100505921	-	uncharacterized LOC100505921	ncRNA	5.768	2.339	4.573	3.158	3.662	1.706	2.048	0.784	0.083	2.950	1.169	7.417	nan	1.610	0.183	5.553	6.843	3.112	nan	14.267	11.002	5.624	1.867	5.912	5.906	3.676	5.012	nan	5.935	3.281	3.728	2.140	5.270	5.054	4.757	5.868	6.389	2.869	1.449	3.537	3.290	1.438	2.957	2.048	7.417	0.382	2.492	2.243	2.386
2913	chr15	66245073	66264933	+	0	NA	intron (NM_032445, intron 9 of 22)	intron (NM_032445, intron 9 of 22)	-77568	NR_036196	100422905		NR_036196	ENSG00000263512	MIR4311	-	microRNA 4311	ncRNA	0.990	1.621	nan	1.099	1.969	1.003	0.986	0.109	0.081	0.581	0.328	1.236	1.768	0.082	0.066	1.328	2.323	0.855	1.972	1.573	1.476	nan	0.668	0.379	0.472	0.359	0.626	5.548	4.079	0.834	0.688	1.137	1.425	0.818	1.079	0.565	1.799	1.010	0.665	0.744	1.308	0.111	0.479	0.986	1.236	0.451	1.557	0.438	0.268
5138	chr21	43181247	43208043	+	0	NA	Intergenic	Intergenic	-7396	NM_020639	54101	Hs.517310	NM_020639	ENSG00000183421	RIPK4	ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4	receptor interacting serine/threonine kinase 4	protein-coding	nan	0.782	1.585	0.409	0.610	0.281	0.446	0.612	0.180	0.380	0.166	0.785	1.894	0.068	0.061	0.989	1.069	1.377	4.675	1.083	0.842	nan	0.264	0.867	0.825	0.160	nan	3.892	4.359	0.550	0.336	1.362	2.311	1.292	1.285	0.876	1.816	1.367	0.932	4.292	0.869	0.174	0.543	0.446	0.785	0.390	0.596	1.580	0.398
7206	chr7	25884999	25912911	+	0	NA	Intergenic	Intergenic	90651	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA	6.018	1.114	6.296	1.099	0.454	0.265	0.665	2.269	0.151	0.478	0.340	0.759	1.723	0.191	0.167	3.488	3.475	1.402	nan	2.363	1.905	4.486	1.996	2.579	2.612	2.729	3.651	2.862	4.140	5.543	4.634	1.405	2.166	1.017	0.849	2.088	nan	1.157	0.574	0.407	1.146	0.182	1.243	0.665	0.759	0.590	1.082	1.692	1.098
3382	chr17	36852968	36892477	+	0	NA	exon (NM_005937, exon 10 of 20)	exon (NM_005937, exon 10 of 20)	-3222	NR_039879	100616153		NR_039879	ENSG00000273627	MIR4726	-	microRNA 4726	ncRNA	nan	1.760	1.632	1.004	2.354	1.433	1.035	0.784	0.208	1.270	0.697	1.641	2.748	0.952	0.087	2.213	2.945	1.713	2.228	nan	2.313	2.332	0.757	5.194	5.476	1.016	1.538	3.764	4.647	nan	2.031	1.003	1.672	1.306	1.274	1.560	2.695	1.836	1.043	1.539	1.540	0.242	0.296	1.035	1.641	0.507	1.542	0.668	1.157
1896	chr12	31158765	31164547	+	0	NA	Intergenic	Intergenic	-65123	NM_004399	1663	Hs.443960	NM_004399	ENSG00000013573	DDX11	CHL1|CHLR1|KRG2|WABS	DEAD/H-box helicase 11	protein-coding	2.572	nan	3.563	0.213	0.211	0.166	0.072	0.066	0.056	0.162	0.074	0.097	0.358	0.044	0.091	0.635	0.969	0.295	0.486	0.854	0.938	0.847	0.325	0.537	0.670	0.533	0.900	0.425	0.886	10.766	13.866	0.285	0.271	2.907	2.678	0.889	1.830	0.547	0.515	0.067	0.134	0.686	0.122	0.072	0.097	1.085	0.389	0.035	0.597
5985	chr4	106195776	106200828	+	0	NA	3' UTR (NM_001127208, exon 11 of 11)	3' UTR (NM_001127208, exon 11 of 11)	75736	NR_126420	104384744	Hs.624109	NR_126420		TET2-AS1	-	TET2 antisense RNA 1	ncRNA	0.694	nan	nan	0.785	1.232	0.539	0.251	0.193	0.128	0.313	0.134	0.982	0.577	0.128	0.058	0.297	0.202	8.327	nan	1.387	1.309	0.243	0.012	0.224	0.209	0.349	nan	1.071	1.591	0.946	0.759	0.140	0.315	0.780	1.414	0.248	nan	1.025	0.573	0.133	0.544	0.169	0.203	0.251	0.982	0.039	0.080	0.019	0.072
2895	chr15	59621299	59649504	+	0	NA	intron (NM_004998, intron 1 of 27)	L1MA3|LINE|L1	29670	NM_004998	4643	Hs.654506	NM_004998	ENSG00000157483	MYO1E	FSGS6|HuncM-IC|MYO1C	myosin IE	protein-coding	0.717	0.840	0.714	0.157	0.289	0.194	0.186	0.411	0.120	0.111	0.123	0.323	0.517	0.053	0.077	0.601	0.787	0.614	0.719	0.299	0.383	0.698	0.219	0.211	0.220	0.122	0.205	1.096	1.074	0.445	0.235	2.887	3.432	0.802	1.284	0.107	0.220	0.178	0.264	0.071	0.167	0.183	0.076	0.186	0.323	0.090	0.033	4.299	0.087
1042	chr10	14658524	14670309	+	0	NA	intron (NM_001282695, intron 2 of 5)	AluSg|SINE|Alu	-17999	NM_001282696	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding	nan	0.869	0.678	0.698	0.526	0.317	0.333	0.189	0.246	0.330	0.295	0.801	1.011	0.037	0.083	0.735	0.467	0.438	0.383	1.026	0.988	10.163	2.620	0.151	0.150	0.446	0.700	0.387	0.429	0.404	0.258	0.155	0.236	0.811	0.503	0.280	0.619	1.932	1.012	0.029	0.090	0.078	0.020	0.333	0.801	0.107	0.017	0.092	0.083
7616	chr8	22445294	22463558	+	0	NA	3' UTR (NM_176871, exon 10 of 10)	3' UTR (NM_176871, exon 10 of 10)	-2688	NM_173686	541565	Hs.743508	NM_173686	ENSG00000241852	C8orf58	-	chromosome 8 open reading frame 58	protein-coding	nan	1.326	nan	0.511	1.829	0.777	1.807	1.380	0.158	0.887	0.390	1.151	0.841	2.195	0.120	1.478	2.000	2.033	3.375	nan	3.323	nan	1.062	0.825	0.854	0.715	1.195	1.312	1.876	1.565	1.902	0.627	0.852	1.518	1.368	1.282	1.681	nan	nan	0.664	0.468	0.260	0.321	1.807	1.151	0.290	1.097	0.217	0.464
38	chr1	3815582	3830385	+	0	NA	intron (NR_024455, intron 2 of 3)	intron (NR_024455, intron 2 of 3)	6015	NR_024455	100133612	Hs.307652	NR_024455	ENSG00000236423	LINC01134	-	long intergenic non-protein coding RNA 1134	ncRNA	2.128	nan	2.313	4.722	1.901	1.076	0.571	0.534	0.164	0.681	0.350	0.808	6.158	1.272	0.103	1.664	1.900	1.326	1.784	7.247	6.696	2.284	0.937	4.296	4.639	1.079	nan	nan	5.561	nan	2.660	1.648	1.779	1.301	1.146	2.153	2.056	1.977	1.138	2.795	1.978	0.216	0.927	0.571	0.808	0.610	1.055	0.711	0.822
3874	chr18	64561049	64581007	+	0	NA	Intergenic	Intergenic	-177793	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA	0.937	0.964	0.723	0.768	0.256	0.130	0.255	0.045	0.032	0.260	0.276	0.030	1.185	0.027	0.083	0.377	0.222	0.149	0.267	0.513	0.554	3.681	1.297	0.443	nan	0.357	nan	2.279	2.189	0.711	0.607	0.092	0.217	4.533	4.396	0.316	0.499	1.044	0.797	0.031	0.129	0.921	0.059	0.255	0.030	0.093	0.138	0.040	0.037
196	chr1	33633627	33652355	+	0	NA	promoter-TSS (NM_001330483)	promoter-TSS (NM_001330483)	-840	NM_001330483	55223	Hs.656006	NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding	2.316	nan	5.032	1.121	0.520	0.308	0.402	0.183	0.112	0.318	0.192	0.810	2.134	0.285	0.099	0.724	0.987	0.529	0.549	1.892	1.582	nan	0.245	0.896	0.971	1.236	1.604	1.480	2.155	nan	2.595	0.479	0.794	0.241	0.206	1.262	2.332	1.280	nan	0.459	0.752	0.025	0.831	0.402	0.810	0.280	1.002	0.420	0.908
7693	chr8	61324557	61331452	+	0	NA	Intergenic	MIRb|SINE|MIR	-1627	NR_103854	100505532	Hs.720321	NR_103854		LINC01301	-	long intergenic non-protein coding RNA 1301	ncRNA	1.313	1.155	1.484	1.945	0.547	0.326	4.172	0.086	0.072	0.476	0.192	0.814	1.256	0.016	0.061	0.339	0.307	0.555	0.851	1.170	1.053	2.306	0.553	0.181	0.119	0.427	nan	1.114	0.806	nan	0.481	0.344	0.703	1.941	1.533	0.260	0.392	2.164	1.282	0.032	0.130	0.330	0.012	4.172	0.814	0.105	4.141	0.050	0.090
1169	chr10	83633907	83645254	+	0	NA	intron (NM_001165973, intron 1 of 10)	intron (NM_001165973, intron 1 of 10)	2137	NM_001165973	10718	Hs.125119	NM_001010848	ENSG00000185737	NRG3	HRG3|pro-NRG3	neuregulin 3	protein-coding	0.539	0.710	0.696	0.047	0.195	0.056	0.022	0.047		0.097	0.073	0.053	1.537	0.067	0.081	0.283	0.235	5.785	3.895	0.092	0.163	0.150	0.116	0.081	0.073	2.130	2.534	0.502	0.771	1.606	1.879	0.085	0.133	0.033	0.053	0.519	0.982	0.080	0.159	0.005	0.028	0.015	0.035	0.022	0.053	0.197	0.017	0.035	0.186
5669	chr3	173300926	173310252	+	0	NA	intron (NM_014932, intron 2 of 6)	intron (NM_014932, intron 2 of 6)	189351	NM_014932	22871	Hs.478289	NM_014932	ENSG00000169760	NLGN1	NL1	neuroligin 1	protein-coding	0.940	2.318	0.740	0.214	1.942	0.890	0.305	0.162	0.069	1.898	1.463	0.282	1.178	0.175	0.054	1.031	0.794	0.255	0.253	1.655	1.555	0.554	0.273	0.305	0.219	8.167	8.258	0.443	0.604	0.916	0.960	0.162	0.181	3.528	4.106	0.278	0.378	2.002	1.035	0.860	0.038	0.683	0.034	0.305	0.282	0.010	0.443	0.033	0.120
118	chr1	19032360	19059398	+	0	NA	intron (NM_002584, intron 7 of 7)	intron (NM_002584, intron 7 of 7)	88379	NM_002584	5081	Hs.113253	NM_002584	ENSG00000009709	PAX7	HUP1|PAX7B|RMS2	paired box 7	protein-coding	0.847	0.740	nan	0.072	0.241	0.106	0.081	0.086	0.060	0.058	0.076	0.053	0.343	0.098	0.084	0.205	0.181	0.110	0.123	0.338	0.423	0.080	0.048	0.244	nan	0.151	nan	0.147	0.168	nan	0.424	0.183	0.239	0.037	0.063	1.477	5.463	0.272	0.310	0.039	0.141	0.007	0.041	0.081	0.053	0.266	0.034	0.022	2.117
3816	chr18	52946803	52961028	+	0	NA	intron (NM_001243228, intron 8 of 19)	intron (NM_001243228, intron 8 of 19)	15937	NM_001243236	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding	nan	1.037	0.863	0.143	0.438	0.214	0.287	0.478	0.057	0.198	0.214	0.461	0.289	0.186	0.082	0.437	0.430	0.321	0.672	1.171	1.365	0.694	0.373	0.573	0.490	1.174	1.344	0.625	0.521	1.577	1.030	0.190	0.330	0.617	0.934	0.404	0.657	nan	1.895	0.087	0.176	0.067	0.261	0.287	0.461	0.230	0.107	0.052	0.155
4872	chr20	19914297	19918978	+	0	NA	intron (NM_001242581, intron 3 of 11)	intron (NM_001242581, intron 3 of 11)	46427	NM_018993	54453	Hs.472270	NM_018993	ENSG00000132669	RIN2	MACS|RASSF4	Ras and Rab interactor 2	protein-coding	1.018	8.784	5.990	0.676	2.071	1.119	0.243	0.347	0.079	0.417	0.196	1.649	6.395	0.070	0.068	0.628	0.644	0.180	0.573	3.015	2.602	1.935	0.732	0.305	0.375	0.239	0.602	2.930	3.746	0.647	0.452	0.171	0.300	0.279	0.368	0.297	0.569	1.831	1.406	1.079	1.245	0.019	0.118	0.243	1.649	0.103	0.279		0.097
1659	chr11	114266901	114273274	+	0	NA	3' UTR (NM_001271562, exon 1 of 1)	3' UTR (NM_001271562, exon 1 of 1)	-1164	NM_001286045	10179	Hs.7527	NM_016090	ENSG00000076053	RBM7	-	RNA binding motif protein 7	protein-coding	2.914	2.812	2.927	5.308	4.873	2.594	2.634	1.138	0.075	2.897	1.616	3.680	7.517	3.271	0.170	7.478	nan	5.162	7.544	9.647	9.537	9.056	5.466	12.670	13.245	3.915	nan	7.754	11.029	6.353	6.612	7.010	11.775	8.777	12.482	4.675	5.109	3.929	1.804	3.651	3.738	2.028	2.292	2.634	3.680	0.957	2.299	4.051	1.427
767	chr1	198858615	198908856	+	0	NA	intron (NR_040073, intron 1 of 2)	MLT2D|LTR|ERVL	22823	NR_040073	100131234	Hs.711077	NR_040073		MIR181A1HG	-	MIR181A1 host gene	ncRNA	0.994	nan	1.402	0.159	0.672	0.387	1.154	1.429	0.180	1.786	1.172	0.085	1.017	0.795	0.132	0.965	1.059	4.338	8.023	1.198	1.086	0.788	0.269	1.328	1.377	4.562	nan	0.991	0.949	1.659	1.492	0.366	0.709	1.872	2.090	0.932	1.809	0.778	0.512	0.020	0.053	0.336	0.039	1.154	0.085	0.063	0.505	0.253	0.532
6638	chr6	18386921	18406670	+	0	NA	intron (NM_182757, intron 1 of 7)	intron (NM_182757, intron 1 of 7)	9214	NM_182757	255488	Hs.148741	NM_182757	ENSG00000137393	RNF144B	IBRDC2|PIR2|bA528A10.3|p53RFP	ring finger protein 144B	protein-coding	1.059	nan	0.980	0.375	0.546	0.268	0.261	0.826	0.106	0.308	0.220	0.779	1.284	0.055	0.097	0.924	1.162	5.180	5.473	0.971	0.916	0.665	0.211	0.364	0.361	0.444	0.809	0.767	0.589	0.491	0.306	0.459	0.752	0.534	0.669	0.355	0.796	0.958	0.750	0.307	0.265	0.115	0.097	0.261	0.779	0.093	0.360	0.332	0.181
805	chr1	204287918	204322003	+	0	NA	intron (NM_014935, intron 1 of 22)	intron (NM_014935, intron 1 of 22)	24097	NM_014935	22874	Hs.253146	NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding	1.730	1.754	1.276	0.442	0.684	0.297	0.689	0.252	0.151	0.217	0.199	0.444	0.600	0.061	0.109	1.028	1.708	0.701	1.123	0.850	0.922	1.352	0.583	nan	nan	3.631	4.149	0.951	1.034	2.831	2.406	0.320	0.478	0.141	0.120	0.631	1.849	0.382	0.366	0.185	1.577	0.014	0.093	0.689	0.444	0.332	0.348	0.189	0.521
1020	chr10	12472486	12479060	+	0	NA	intron (NM_020397, intron 1 of 9)	intron (NM_020397, intron 1 of 9)	84231	NM_153498	57118	Hs.600547	NM_020397	ENSG00000183049	CAMK1D	CKLiK|CaM-K1|CaMKID	calcium/calmodulin dependent protein kinase ID	protein-coding	nan	1.162	0.639	1.947	0.569	0.237	0.366	0.248	0.102	0.787	0.652	2.870	2.754	0.045	0.066	0.253	0.367	0.224	0.283	2.561	2.396	10.964	3.219	0.126	0.168	0.477	0.864	3.237	3.841	0.297	0.162	0.265	0.313	0.835	0.752	0.219	0.427	2.108	1.113	1.214	1.691	0.189	0.012	0.366	2.870	0.115	1.508	0.075	0.170
2173	chr12	119788606	119852048	+	0	NA	intron (NM_178499, intron 1 of 13)	L2b|LINE|L2	47810	NM_178499	160777	Hs.98188	NM_178499	ENSG00000183273	CCDC60	-	coiled-coil domain containing 60	protein-coding	nan	nan	0.578	0.067	0.695	0.357	0.448	0.057	0.082	0.263	0.251	2.007	5.852	0.062	0.103	0.346	0.318	0.179	0.357	nan	nan	nan	0.807	0.094	0.106	1.166	1.428	nan	nan	0.576	0.245	0.311	0.520	0.728	0.618	0.390	0.799	nan	1.273	1.563	1.491	0.170	0.261	0.448	2.007	0.075	0.206	0.213	0.193
6287	chr5	59181108	59202030	+	0	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	-1948	NM_001104631	5144	Hs.117545	NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding	nan	nan	0.676	0.080	0.297	0.137	0.157	0.092	0.069	0.082	0.107	0.063	0.678	0.078	0.111	0.157	0.137	0.140	0.131	0.419	0.386	nan	0.095	0.078	0.088	5.337	5.405	0.250	0.203	nan	0.210	0.053	0.094	0.221	0.219	0.244	0.391	0.244	0.308	0.024	0.072	0.146	0.052	0.157	0.063	0.005	0.019	0.014	0.082
5707	chr3	178300091	178326201	+	0	NA	intron (NM_001278911, intron 1 of 4)	MIRc|SINE|MIR	36658	NM_001278911	10242	Hs.478368	NM_005832	ENSG00000197584	KCNMB2	-	potassium calcium-activated channel subfamily M regulatory beta subunit 2	protein-coding	1.387	2.493	1.000	0.454	4.094	2.321	0.544	0.181	0.197	1.997	1.179	0.461	1.232	0.087	0.097	0.326	0.187	0.253	0.309	0.856	1.028	5.935	1.807	0.228	0.223	0.577	0.817	2.110	1.434	0.585	0.244	0.158	0.257	2.143	2.198	0.352	0.691	1.353	0.824	0.089	0.465	0.427	0.806	0.544	0.461	0.251	0.255	0.031	0.175
194	chr1	33336429	33360124	+	0	NA	Intergenic	Intergenic	-3822	NM_002143	3208	Hs.632391	NM_002143	ENSG00000121905	HPCA	BDR2|DYT2	hippocalcin	protein-coding	3.407	nan	1.972	0.639	0.854	0.450	0.547	0.059	0.102	0.173	0.193	1.157	1.546	0.521	0.126	1.591	2.181	0.305	0.274	2.931	3.008	nan	0.234	0.435	0.441	0.900	1.506	0.749	1.147	nan	3.209	1.635	1.967	1.176	0.954	2.497	6.653	0.614	nan	0.366	0.345	0.726	1.151	0.547	1.157	1.437	0.107	1.076	2.902
3503	chr17	62317615	62342209	+	0	NA	intron (NM_018469, intron 1 of 11)	AluJr|SINE|Alu	10771	NM_001288732	55852	Hs.175414	NM_018469	ENSG00000136478	TEX2	HT008|TMEM96	testis expressed 2	protein-coding	1.551	nan	1.421	1.102	0.641	0.450	0.265	0.298	0.105	0.320	0.248	0.579	1.050	0.309	0.132	1.129	1.233	0.712	0.990	1.106	1.073	3.250	0.871	1.459	1.778	0.712	nan	6.637	5.868	1.499	1.322	0.596	1.052	0.882	0.598	1.811	4.095	1.031	0.836	0.366	0.391	0.112	0.268	0.265	0.579	0.122	0.343	0.241	1.062
8014	chr9	2228243	2244466	+	0	NA	Intergenic	Intergenic	77898	NM_001289400	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	1.137	2.227	1.693	1.048	1.254	0.675	0.979	0.325	0.150	1.371	0.661	1.877	4.950	0.081	0.069	0.406	0.348	0.701	1.190	3.334	3.154	3.977	2.156	0.550	0.699	1.677	2.255	2.201	3.194	1.611	2.012	0.724	1.123	1.462	0.996	0.864	nan	2.600	1.682	1.890	3.316	0.195	0.250	0.979	1.877	0.898	0.598	0.583	0.139
6501	chr5	147327750	147353870	+	0	NA	Intergenic	Intergenic	-54709	NM_206966	389336	Hs.660038	NM_206966	ENSG00000178776	C5orf46	SSSP1	chromosome 5 open reading frame 46	protein-coding	nan	0.724	0.580	0.106	0.331	0.129	0.088	0.106	0.061	0.072	0.113	0.105	0.478	0.039	0.109	0.225	0.140	12.086	11.149	0.203	0.243	0.252	0.117	0.297	0.293	0.308	0.432	1.204	1.430	0.455	0.184	0.291	0.370	0.226	0.313	0.306	0.963	0.305	0.384	0.017	0.079	0.049	0.037	0.088	0.105	0.037	0.074	0.121	0.176
7888	chr8	116430723	116446246	+	0	NA	intron (NM_001330599, intron 4 of 5)	intron (NM_001330599, intron 4 of 5)	241755	NM_001282902	7227	Hs.657018	NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding	nan	nan	1.050	0.089	0.252	0.126	0.024	1.124	0.104	0.060	0.073	0.075	0.435	0.042	0.084	0.235	0.145	0.157	0.342	0.365	0.419	nan	0.090	0.676	nan	2.556	nan	0.223	0.284	0.557	0.250	0.096	0.205	2.958	3.480	0.394	0.702	0.545	0.478	0.032	0.097	0.612	0.041	0.024	0.075	0.012	0.052	0.044	0.162
2395	chr13	99645022	99663680	+	0	NA	intron (NM_001130049, intron 1 of 32)	intron (NM_001130049, intron 1 of 32)	-24013	NM_001130050	23348	Hs.596105	NM_015296	ENSG00000088387	DOCK9	ZIZ1|ZIZIMIN1	dedicator of cytokinesis 9	protein-coding	0.915	4.115	1.292	0.221	2.011	1.071	0.690	0.475	0.082	0.117	0.103	0.388	0.802	0.041	0.082	0.639	0.630	0.498	0.663	0.520	0.552	2.008	0.727	0.113	0.162	0.332	nan	1.542	1.521	0.708	0.476	0.307	0.428	0.624	0.544	0.622	nan	0.499	0.377	3.084	0.380	0.132	0.247	0.690	0.388	0.120	0.294	0.064	0.299
4129	chr19	49370813	49381160	+	0	NA	intron (NM_014330, intron 1 of 2)	MSR1|Satellite|Satellite	337	NM_014330	23645	Hs.631593	NM_014330	ENSG00000087074	PPP1R15A	GADD34	protein phosphatase 1 regulatory subunit 15A	protein-coding	2.287	2.892	2.273	1.277	3.021	1.728	5.052	3.239	0.357	0.508	0.309	1.389	3.903	3.131	0.218	0.997	1.712	3.203	5.109	2.955	2.499	4.231	2.271	4.941	5.482	1.834	2.490	2.589	4.350	1.973	2.179	1.180	1.638	2.916	3.125	2.174	5.862	2.662	1.775	1.921	6.466	0.246	0.829	5.052	1.389	0.818	1.905	0.403	1.162
4937	chr20	35345497	35378870	+	0	NA	intron (NM_032013, intron 1 of 15)	intron (NM_032013, intron 1 of 15)	12358	NM_032013	57446	Hs.437338	NM_022477	ENSG00000101079	NDRG3	-	NDRG family member 3	protein-coding	1.235	1.438	1.012	0.434	0.439	0.284	0.280	0.306	0.246	0.216	0.203	0.438	0.874	0.269	0.117	0.946	1.108	0.463	0.660	0.594	nan	1.187	0.525	0.814	0.803	0.839	1.245	0.995	1.199	1.063	0.763	0.587	0.812	0.192	0.235	1.782	nan	0.477	0.357	0.112	0.245	0.043	0.147	0.280	0.438	0.116	0.234	0.152	2.040
1989	chr12	63012106	63027355	+	0	NA	Intergenic	Intergenic	22264	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i|let-7i	microRNA let-7i	ncRNA	1.285	1.088	0.801	0.745	0.588	0.231	0.245	0.495	0.189	1.177	1.097	1.341	5.581	0.028	0.082	0.449	0.554	1.787	1.136	0.593	nan	2.153	0.487	0.380	0.431	0.780	1.003	1.646	1.825	0.765	0.578	0.318	0.508	2.470	2.092	0.456	0.985	3.283	1.971	0.792	1.115	0.561	0.082	0.245	1.341	0.164	0.246	0.091	0.261
5797	chr3	194960298	194982176	+	0	NA	intron (NM_152531, intron 1 of 3)	AluSq2|SINE|Alu	-2588	NM_001308069	152002	Hs.478741	NM_152531	ENSG00000173950	XXYLT1	C3orf21	xyloside xylosyltransferase 1	protein-coding	nan	1.328	1.794	1.041	1.473	0.770	0.690	2.382	0.472	0.622	0.456	2.720	nan	0.348	0.095	0.641	0.835	1.178	2.102	3.660	3.960	1.776	0.687	1.232	1.341	4.019	4.370	2.013	2.168	4.262	3.559	1.257	1.799	0.431	0.488	1.259	2.355	1.034	0.699	1.659	1.342	0.109	1.937	0.690	2.720	0.891	0.219	0.880	1.910
4035	chr19	36604418	36608035	+	0	NA	promoter-TSS (NM_006233)	promoter-TSS (NM_006233)	-20	NM_006233	5438	Hs.47062	NM_006233	ENSG00000105258	POLR2I	RPB9|hRPB14.5	RNA polymerase II subunit I	protein-coding	5.064	3.025	3.356	9.971	3.881	2.439	3.258	1.750	0.134	2.256	0.933	5.226	20.300	5.141	0.181	2.707	4.226	4.135	5.903	8.989	6.965	8.001	3.853	10.686	10.577	3.773	5.454	6.131	10.626	nan	8.029	3.407	5.510	3.578	2.908	4.296	6.238	3.801	2.133	3.671	4.852	0.970	1.487	3.258	5.226	1.374	2.834	3.268	1.504
4120	chr19	48406569	48420955	+	0	NA	Intergenic	L1P4|LINE|L1	-2546	NR_024220	100170225	Hs.717052	NR_024220		SNAR-C1	-	small ILF3/NF90-associated RNA C1	snRNA	1.711	1.398	1.569	0.147	1.105	0.557	0.472	0.216	0.199	0.105	0.202	0.141	0.373	12.263	0.792	0.544	0.340	0.238	0.332	0.531	0.614	0.914	0.387	0.626	0.528	0.510	0.899	0.606	0.661	1.120	0.306	0.313	0.464	0.189	0.383	0.789	1.741	0.680	0.869	0.058	0.174	0.101	0.121	0.472	0.141	0.088	0.333	0.108	0.352
5955	chr4	81942042	81961369	+	0	NA	promoter-TSS (NM_001201)	promoter-TSS (NM_001201)	-414	NM_001201	651	Hs.387411	NM_001201	ENSG00000152785	BMP3	BMP-3A	bone morphogenetic protein 3	protein-coding	0.675	0.597	0.713	0.185	0.782	0.400	0.238	0.088	0.050	0.114	0.089	0.230	0.773	0.045	0.073	0.248	0.133	0.330	0.974	1.621	1.114	1.561	0.485	0.227	0.255	0.100	nan	0.382	0.385	0.375	0.198	0.090	0.102	0.301	0.185	0.266	nan	0.368	0.404	0.533	5.119	0.020	0.111	0.238	0.230	0.010	0.084	0.010	0.077
6119	chr5	294501	323843	+	0	NA	intron (NM_001267558, intron 5 of 6)	intron (NM_001267558, intron 5 of 6)	4881	NM_001242412	57491	Hs.50823	NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl-hydrocarbon receptor repressor	protein-coding	0.555	1.806	1.810	1.200	2.501	1.177	1.695	0.407	0.195	0.970	0.796	7.967	3.283	0.206	0.110	0.973	1.535	0.511	nan	8.160	7.159	2.638	0.822	0.778	0.888	0.434	0.856	nan	8.199	nan	0.502	0.720	1.158	0.258	0.227	0.147	0.218	1.946	nan	3.784	2.630	0.042	0.079	1.695	7.967	0.292	0.490	0.638	0.071
2160	chr12	117463216	117491633	+	0	NA	intron (NR_031766, intron 7 of 7)	MIRc|SINE|MIR	-52282	NR_103809	100506551	Hs.657861	NR_103809	ENSG00000257279	LOC100506551	-	uncharacterized LOC100506551	ncRNA	nan	nan	1.473	0.475	1.083	0.575	0.464	0.085	0.068	0.265	0.219	0.824	3.227	0.104	0.066	1.278	1.523	0.282	0.363	nan	nan	nan	0.311	1.066	1.115	0.518	0.784	nan	nan	0.610	0.528	0.609	0.986	0.901	0.922	0.570	0.853	nan	1.986	3.468	2.755	0.115	1.089	0.464	0.824	0.226	0.389	0.723	0.122
3785	chr18	46350363	46370081	+	0	NA	intron (NM_014772, intron 10 of 11)	intron (NM_014772, intron 10 of 11)	108955	NM_001190823	4092	Hs.465087	NM_005904	ENSG00000101665	SMAD7	CRCS3|MADH7|MADH8	SMAD family member 7	protein-coding	nan	0.804	0.956	0.151	0.500	0.325	5.911	0.799	0.114	0.126	0.133	1.343	0.840	0.072	0.066	0.517	0.635	0.358	0.775	1.346	1.616	2.925	0.774	0.191	0.205	0.456	0.654	0.292	0.535	0.518	0.430	0.294	0.728	1.542	1.231	0.353	nan	3.555	1.978	0.973	0.198	0.221	0.213	5.911	1.343	0.414	0.185	0.570	0.183
5228	chr22	28534315	28548511	+	0	NA	intron (NM_001145418, intron 6 of 22)	intron (NM_001145418, intron 6 of 22)	-224813	NR_036169	100423034		NR_036169	ENSG00000264073	MIR3199-1	mir-3199-1	microRNA 3199-1	ncRNA	nan	0.620	0.890	0.081	0.338	0.241	0.268	1.956	0.113	0.087	0.096	0.190	0.223	0.069	0.076	0.333	0.263	0.309	nan	0.389	0.526	0.286	0.144	0.328	0.332	2.886	3.785	0.218	0.286	0.911	0.575	0.178	0.272	0.585	0.442	0.381	nan	0.882	0.986	0.078	0.078	0.099	0.747	0.268	0.190	0.109	0.050	0.140	0.271
8089	chr9	22199625	22220453	+	0	NA	Intergenic	AluY|SINE|Alu	-200727	NM_078487	1030	Hs.72901	NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0.707	3.561	5.750	0.227	0.462	0.248	0.215	1.368	0.147	0.249	0.146	0.063	1.159	0.073	0.069	0.183	0.136	1.067	1.967	0.548	0.535	0.298	0.155	0.118	0.122	0.789	1.240	0.597	0.609	0.458	0.231	0.143	0.319	0.623	0.897	0.364	0.664	1.261	1.061	0.029	4.325	0.105	0.068	0.215	0.063	0.009	0.389	0.054	0.202
2450	chr13	111765779	111776279	+	0	NA	intron (NM_001113512, intron 1 of 17)	intron (NM_001113512, intron 1 of 17)	-3004	NR_046667	100874238	Hs.569218	NR_046667	ENSG00000235875	ARHGEF7-AS2	-	ARHGEF7 antisense RNA 2	ncRNA	2.136	nan	3.346	1.851	1.312	0.823	3.015	0.203	0.061	0.446	0.303	5.649	2.670	0.145	0.088	0.600	0.392	2.095	1.486	5.933	5.100	1.103	0.409	0.205	0.284	0.048	0.067	4.708	6.312	0.398	0.247	0.930	1.566	0.471	0.584	0.148	0.212	0.659	0.400	1.288	1.839	0.173	1.978	3.015	5.649	0.351	1.639	0.370	0.065
1398	chr11	45101559	45114290	+	0	NA	Intergenic	Intergenic	-7640	NR_046338	56981	Hs.178715	NM_020229	ENSG00000019485	PRDM11	PFM8	PR/SET domain 11	protein-coding	nan	1.508	0.983	0.451	1.703	0.882	2.148	1.062	0.202	0.665	0.199	0.236	1.008	0.076	0.106	1.540	2.977	0.190	0.320	0.784	0.666	9.714	2.914	0.143	0.168	1.191	1.577	0.734	0.541	2.658	2.153	0.381	0.483	0.472	0.476	0.362	nan	1.983	1.025	0.168	1.757	0.127	0.013	2.148	0.236	1.660	0.230	0.093	0.050
6639	chr6	18465379	18470233	+	0	NA	3' UTR (NM_182757, exon 8 of 8)	3' UTR (NM_182757, exon 8 of 8)	80225	NM_182757	255488	Hs.148741	NM_182757	ENSG00000137393	RNF144B	IBRDC2|PIR2|bA528A10.3|p53RFP	ring finger protein 144B	protein-coding	1.030	nan	1.236	0.547	0.455	0.132	0.157	0.202	0.167	2.001	0.834	0.497	2.538	0.044	0.160	0.541	0.321	8.859	4.838	0.628	0.841	1.200	0.299	0.342	0.194	0.881	1.301	0.270	0.257	0.386	0.270	0.151	0.325	2.695	2.716	0.256	0.725	3.048	1.562	0.118	0.079	0.530	0.065	0.157	0.497	0.061		0.062	0.154
3986	chr19	16829196	16849546	+	0	NA	intron (NM_001290355, intron 3 of 20)	AluSx1|SINE|Alu	-2632	NM_001347994	284434	Hs.406014	NM_001007525	ENSG00000188039	NWD1	-	NACHT and WD repeat domain containing 1	protein-coding	1.926	2.266	1.829	0.865	0.490	0.228	1.258	0.617	0.261	0.239	0.361	0.358	1.472	0.739	0.120	0.285	0.253	0.303	0.915	1.250	1.308	2.079	0.786	0.182	0.149	0.343	0.635	0.247	0.402	0.504	0.406	0.132	0.226	1.548	1.042	0.301	0.606	4.096	1.850	2.165	0.463	0.140	0.055	1.258	0.358	0.268	0.908	0.116	0.158
5677	chr3	173842532	173850745	+	0	NA	intron (NM_014932, intron 4 of 6)	intron (NM_014932, intron 4 of 6)	-208052	NR_046664	100874010	Hs.624265	NR_046664	ENSG00000228213	NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA	0.988	1.281	0.751	0.237	0.777	0.156	0.297	0.501	0.100	0.764	0.646	0.264	0.678	0.079	0.086	0.303	0.226	0.651	1.099	0.563	0.679	11.319	3.818	0.337	0.372	2.422	2.780	1.013	1.582	0.612	0.328	0.117	0.227	2.163	2.727	0.468	0.952	1.337	1.064	0.511	0.099	0.244	0.023	0.297	0.264	0.024	0.109	0.064	0.150
8122	chr9	36757570	36775482	+	0	NA	Intergenic	AluSq2|SINE|Alu	57070	NR_039686	100616289		NR_039686	ENSG00000266255	MIR4475	-	microRNA 4475	ncRNA	0.601	nan	0.724	0.605	1.517	0.770	0.321	0.055	0.064	0.393	0.296	2.917	2.467	0.351	0.070	0.657	0.932	0.343	0.402	1.748	1.611	3.538	0.967	0.237	0.256	0.731	1.126	2.429	2.460	1.747	1.898	0.578	0.732	0.781	0.575	0.306	0.475	2.385	1.648	0.430	2.705	0.155	0.588	0.321	2.917	0.152	0.295	0.376	0.069
527	chr1	150334430	150345976	+	0	NA	intron (NM_001297674, intron 1 of 9)	AluSx|SINE|Alu	3616	NM_001297674	23248	Hs.213666	NM_015203	ENSG00000163125	RPRD2	HSPC099|KIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	nan	nan	4.338	3.391	3.672	2.084	2.879	2.279	0.361	3.467	1.976	4.203	11.705	3.829	0.222	5.339	5.826	4.723	7.295	8.348	nan	6.732	3.042	8.082	8.264	4.410	5.145	6.047	9.360	6.301	6.063	5.647	10.015	5.439	5.944	7.495	8.254	2.981	1.486	3.772	7.570	1.015	2.435	2.879	4.203	1.096	3.723	4.644	2.452
1870	chr12	24889946	24915305	+	0	NA	Intergenic	Intergenic	152697	NM_001178094	586	Hs.438993	NM_005504	ENSG00000060982	BCAT1	BCATC|BCT1|ECA39|MECA39|PNAS121|PP18	branched chain amino acid transaminase 1	protein-coding	nan	nan	nan	0.237	0.352	0.202	0.153	0.077	0.013	0.136	0.157	0.434	0.311	3.350	0.165	0.207	0.168	1.455	2.287	0.489	0.503	0.125	0.099	0.368	0.347	0.256	0.352	0.385	0.413	0.410	0.122	0.153	0.307	0.090	0.130	0.346	0.518	0.299	0.366	0.033	0.074	0.011	0.099	0.153	0.434	0.027	0.056	0.098	0.068
5214	chr22	25389179	25398602	+	0	NA	Intergenic	L1ME3|LINE|L1	-30051	NM_001145206	85379	Hs.419171	NM_001145206	ENSG00000197077	KIAA1671	-	KIAA1671	protein-coding	1.323	nan	0.762	0.542	0.864	0.458	0.907	0.390	0.238	0.066	0.080	1.195	0.768	0.061	0.086	0.560	0.848	0.329	0.602	0.581	0.573	0.564	0.199	1.107	1.150	0.285	0.658	1.553	2.707	2.479	1.814	0.697	1.044	1.690	1.810	1.559	4.352	3.881	1.989	0.107	0.429	0.182	0.185	0.907	1.195	0.784	0.304	1.173	0.987
833	chr1	208271952	208277920	+	0	NA	intron (NM_025179, intron 5 of 31)	intron (NM_025179, intron 5 of 31)	142729	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding	1.601	2.819	1.216	2.113	4.216	1.910	2.222	0.628	0.136	1.491	1.025	7.967	8.795	0.093	0.029	0.621	1.079	0.492	0.644	7.527	6.946	2.865	0.730	nan	nan	1.848	2.509	4.783	4.090	0.649	0.542	0.216	0.266	1.283	0.930	0.751	1.554	2.582	1.472	5.713	5.461	0.223	0.267	2.222	7.967	0.226	0.445	0.033	0.497
5112	chr21	36624609	36631440	+	0	NA	Intergenic	Intergenic	-206429	NM_001754	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding	1.395	1.074	1.845	1.384	1.368	0.667	0.749	3.477	0.282	0.416	0.216	3.034	4.811	0.031	0.067	0.423	0.417	0.879	2.795	3.122	2.613	3.018	0.845	0.338	0.502	0.145	0.231	6.776	5.570	1.038	0.792	0.116	0.265	0.356	0.258	0.201	0.277	nan	1.312	2.447	8.169	0.041	0.046	0.749	3.034		1.176	0.087	0.036
4513	chr2	137579339	137602281	+	0	NA	intron (NM_001316349, intron 1 of 27)	AluYk4|SINE|Alu	67678	NM_001316349	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin type 1 domain containing 7B	protein-coding	nan	3.875	6.408	0.088	0.200	0.098	0.126	0.081	0.035	0.068	0.118	0.062	0.282	0.038	0.091	0.290	0.173	0.138	0.183	0.364	0.483	0.121	0.058	0.133	0.112	0.642	0.865	0.294	nan	1.917	1.688	0.135	0.203	20.039	19.791	0.406	0.727	0.349	0.415	0.046	0.093	6.135	0.059	0.126	0.062	0.441	0.036	0.031	0.333
2743	chr14	93382259	93391652	+	0	NA	Intergenic	AluSx|SINE|Alu	-2490	NM_001301690	1113	Hs.150793	NM_001275	ENSG00000100604	CHGA	CGA	chromogranin A	protein-coding	2.281	1.332	nan	1.926	4.137	2.199	1.829	0.112	0.086	1.880	0.998	2.937	5.160	0.057	0.095	1.046	1.653	0.096	0.101	4.292	4.043	2.502	1.327	0.238	0.334	1.352	1.930	2.852	4.425	3.710	4.493	1.073	2.069	2.922	3.171	2.513	5.650	nan	2.046	2.206	3.471	0.516	1.258	1.829	2.937	0.308	0.991	0.653	2.132
4588	chr2	169374103	169415575	+	0	NA	intron (NM_203463, intron 1 of 9)	L2a|LINE|L2	-44614	NR_039933	100616356		NR_039933	ENSG00000265694	MIR4774	-	microRNA 4774	ncRNA	1.117	1.015	nan	0.503	0.361	0.163	0.275	0.714	0.143	0.140	0.141	0.190	0.492	0.076	0.093	0.612	0.485	4.127	2.984	0.302	0.347	0.593	0.189	1.706	1.714	1.007	1.209	0.606	0.572	1.374	1.111	1.232	2.058	0.142	0.283	1.058	3.407	0.279	0.262	0.044	0.088	0.030	0.136	0.275	0.190	0.066	0.044	1.471	0.816
3276	chr17	9098252	9124103	+	0	NA	intron (NM_004822, intron 5 of 6)	intron (NM_004822, intron 5 of 6)	-28742	NR_110828	101928266	Hs.639880	NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA	1.042	0.898	3.013	0.048	0.294	0.149	0.265	0.052	0.081	0.134	0.096	0.099	0.745	0.100	0.151	0.515	0.547	0.268	0.446	0.241	0.262	1.867	0.424	0.165	0.194	0.161	0.288	0.141	0.158	0.696	0.577	0.185	0.289	0.082	0.064	0.236	0.475	0.410	0.315	0.015	0.031	0.011	0.012	0.265	0.099	0.045	0.083	0.092	0.130
7892	chr8	118159016	118171250	+	0	NA	intron (NM_173851, intron 2 of 7)	intron (NM_173851, intron 2 of 7)	17796	NM_001172814	169026	Hs.532270	NM_173851	ENSG00000164756	SLC30A8	ZNT8|ZnT-8	solute carrier family 30 member 8	protein-coding	nan	nan	0.952	0.707	0.343	0.145	0.313	0.115	0.210	0.230	0.145	0.137	1.436	0.027	0.062	0.255	0.119	0.140	0.243	0.782	0.972	nan	0.847	0.653	nan	0.268	nan	1.046	1.734	0.437	0.181	0.122	0.198	1.234	0.802	0.284	0.612	0.958	0.876	8.174	0.131	0.477	0.155	0.313	0.137		0.033	0.016	0.131
3649	chr18	5474389	5479698	+	0	NA	intron (NM_001330557, intron 3 of 21)	intron (NM_001330557, intron 3 of 21)	63512	NM_001281533	23136	Hs.213394	NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1 like 3	protein-coding	1.099	0.823	1.131	0.093	1.397	0.887	0.242	0.045	0.153	0.323	0.231	0.045	nan	0.082	0.130	0.362	0.292	1.279	0.515	3.135	3.321	nan	0.184	0.167	0.166	0.139	nan	1.896	2.973	nan	0.311	0.286	0.649	6.508	9.762	0.210	nan	nan	0.515	0.514	0.166	2.383	0.697	0.242	0.045		0.039	0.728	0.086
548	chr1	153533771	153561402	+	0	NA	Intergenic	SVA_C|Other|Other	-9280	NM_005978	6273	Hs.516484	NM_005978	ENSG00000196754	S100A2	CAN19|S100L	S100 calcium binding protein A2	protein-coding	nan	nan	1.898	0.654	0.754	0.353	2.280	1.577	0.250	0.839	0.298	0.598	7.951	0.230	0.131	0.398	0.406	1.022	2.431	1.237	nan	2.158	0.559	0.797	0.795	2.540	3.483	2.060	2.685	2.608	2.700	0.873	0.864	2.438	3.229	2.919	9.165	1.106	0.785	1.819	1.081	0.851	0.075	2.280	0.598	1.148	2.337	0.168	3.975
2575	chr14	45718331	45723799	+	0	NA	intron (NM_018353, intron 1 of 16)	intron (NM_018353, intron 1 of 16)	1540	NM_018353	55320	Hs.732769	NM_018353	ENSG00000129534	MIS18BP1	C14orf106|HSA242977|KNL2|M18BP1	MIS18 binding protein 1	protein-coding	nan	2.026	nan	4.115	3.040	1.580	1.345	3.843	0.587	1.591	0.887	1.512	5.678	4.657	0.210	4.502	4.819	8.490	11.058	4.017	3.673	2.117	0.643	13.334	13.774	4.660	5.690	8.414	11.566	5.879	5.401	2.287	4.619	4.985	5.336	2.461	2.869	2.421	1.534	1.620	3.790	0.800	3.021	1.345	1.512	0.464	2.421	3.157	1.305
3450	chr17	48735384	48741696	+	0	NA	intron (NM_003786, intron 8 of 30)	intron (NM_003786, intron 8 of 30)	26322	NM_003786	8714	Hs.463421	NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding	2.293	1.897	nan	0.954	0.880	0.561	1.016	1.758	0.203	0.372	0.078	0.248	0.739	0.121	0.118	0.654	0.663	0.450	1.282	0.696	nan	2.872	0.604	2.635	2.864	0.595	1.074	8.899	nan	1.076	0.873	0.621	0.487	1.592	4.449	0.722	1.276	1.315	0.990	0.901	0.339	0.198	0.370	1.016	0.248	0.755	7.166	0.112	0.312
1110	chr10	43424645	43429526	+	0	NA	Intergenic	Intergenic	49870	NR_126352	104266963	Hs.559152	NR_126352	ENSG00000229630	LINC01264	-	long intergenic non-protein coding RNA 1264	ncRNA	0.695	nan	0.574	1.091	0.121	0.164	0.043	0.032	0.033		0.065	0.085	2.473	0.088	0.026	0.303	0.631	0.143	0.402	0.487	0.310	1.708	0.324	0.230	0.220	0.056	0.144	1.049	1.038	0.106	0.051	0.146	0.149	0.385	0.269	0.033	0.093	0.801	0.458	0.130	0.055	0.020		0.043	0.085	0.041	6.485	0.041	
4641	chr2	185306309	185319531	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	69218	NR_039638	100616305		NR_039638	ENSG00000266808	MIR548AE1	-	microRNA 548ae-1	ncRNA	0.986	1.033	1.029	0.147	0.313	0.123	0.125	0.175	0.121	0.155	0.121	0.082	0.254	0.033	0.080	0.433	0.511	0.290	0.425	0.239	0.308	0.457	0.139	0.444	0.355	nan	1.256	0.621	0.571	1.165	0.712	0.132	0.284	0.042	0.065	3.018	nan	0.354	0.349	0.038	0.061	0.022	0.709	0.125	0.082	0.146	0.031	0.074	2.322
2204	chr12	127335161	127355421	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	13945	NR_033970	440117	Hs.127100	NR_033970	ENSG00000249873	LOC440117	-	uncharacterized LOC440117	ncRNA	0.714	0.680	0.577	0.084	0.193	0.063	0.272	0.047	0.112	0.109	0.160	0.065	0.254	0.037	0.146	0.345	0.190	0.124	0.226	0.268	0.370	nan	0.077	0.239	0.211	0.161	0.221	0.488	0.425	0.371	0.151	0.129	0.141	0.063	0.084	1.577	4.737	0.539	0.553	0.030	0.039	0.010	0.016	0.272	0.065	0.028	0.055	0.020	1.317
6494	chr5	146699167	146717331	+	0	NA	intron (NM_001287740, intron 5 of 13)	intron (NM_001287740, intron 5 of 13)	93670	NM_145001	202374	Hs.585069	NM_145001	ENSG00000169302	STK32A	YANK1	serine/threonine kinase 32A	protein-coding	nan	1.553	0.514	0.930	2.896	1.468	0.162	0.139	0.054	0.621	0.194	4.146	1.382	0.042	0.130	0.216	0.145	0.176	0.238	2.355	2.880	1.600	0.614	0.086	0.071	0.627	0.970	1.793	1.462	0.768	0.701	0.110	0.196	0.407	0.270	0.195	0.363	1.785	1.001	0.216	0.430	0.052	0.803	0.162	4.146	0.053	0.124	0.011	0.061
7964	chr8	141466130	141478177	+	0	NA	Intergenic	Intergenic	-3475	NM_031466	83696	Hs.654911	NM_031466	ENSG00000167632	TRAPPC9	IBP|IKBKBBP|MRT13|NIBP|T1|TRS120	trafficking protein particle complex 9	protein-coding	4.292	3.014	nan	4.212	5.245	2.731	1.996	1.012	0.281	1.190	0.373	4.640	8.058	1.135	0.094	2.907	3.186	2.233	3.689	nan	7.770	nan	3.794	6.434	6.876	2.128	2.811	4.858	6.896	4.051	4.037	1.856	2.841	4.404	4.628	2.054	2.606	3.454	1.695	4.353	4.164	0.725	1.030	1.996	4.640	1.224	3.483	1.035	0.719
783	chr1	202774365	202781138	+	0	NA	5' UTR (NM_001314042, exon 1 of 28)	5' UTR (NM_001314042, exon 1 of 28)	847	NM_006618	10765	Hs.18891	NM_006618	ENSG00000117139	KDM5B	CT31|JARID1B|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1	lysine demethylase 5B	protein-coding	4.929	3.745	3.978	3.233	4.791	2.714	4.774	1.839	0.259	3.715	1.371	4.727	10.399	3.660	0.203	2.283	3.516	7.453	9.481	7.715	6.953	7.945	2.757	nan	nan	3.357	4.098	6.631	9.033	3.647	3.802	1.467	3.951	1.819	2.067	3.395	5.114	2.822	1.621	4.713	8.519	0.339	1.751	4.774	4.727	0.927	3.292	1.932	1.048
1357	chr11	27432712	27495591	+	0	NA	intron (NM_018490, intron 1 of 17)	intron (NM_018490, intron 1 of 17)	-29127	NR_131169	105376671	Hs.568999	NR_131169	ENSG00000254862	LOC105376671	lnc-BBOX1-1	uncharacterized LOC105376671	ncRNA	1.116	1.730	0.980	0.327	1.554	0.833	0.784	0.377	0.107	0.807	0.442	0.638	1.560	0.113	0.090	1.575	1.571	1.146	1.817	0.629	0.707	4.654	2.299	0.370	0.363	0.879	1.244	0.351	0.447	0.719	0.601	0.754	1.014	3.018	5.361	0.242	0.500	1.297	0.806	0.412	0.224	0.833	0.752	0.784	0.638	0.089	0.145	0.364	0.124
6439	chr5	124519654	124571598	+	0	NA	intron (NR_109882, intron 4 of 5)	intron (NR_109882, intron 4 of 5)	173102	NR_109882	101927421	Hs.121305	NR_109882		LOC101927421	-	uncharacterized LOC101927421	ncRNA	nan	1.032	0.781	0.077	0.529	0.283	0.359	0.346	0.090	0.133	0.177	0.171	0.564	3.345	0.162	0.237	0.185	0.434	nan	0.452	0.470	0.629	0.247	0.292	0.270	0.888	1.092	0.288	0.290	0.563	0.318	0.108	0.149	1.801	2.004	0.615	2.259	0.369	0.367	0.073	0.159	0.513	0.136	0.359	0.171	0.142	0.119	0.055	0.447
7602	chr8	17012681	17021345	+	0	NA	intron (NM_016353, intron 1 of 12)	intron (NM_016353, intron 1 of 12)	3177	NM_016353	51201	Hs.728241	NM_016353	ENSG00000104219	ZDHHC2	DHHC2|ZNF372	zinc finger DHHC-type containing 2	protein-coding	1.877	2.150	nan	1.627	1.793	0.944	1.665	0.130	0.148	2.094	0.958	3.136	1.747	1.550	0.124	1.953	2.477	2.281	3.165	3.967	nan	6.612	2.824	3.747	3.302	0.227	0.353	2.932	3.626	1.151	1.267	1.631	2.914	6.675	7.003	0.785	1.584	5.430	2.800	0.147	0.792	2.067	0.422	1.665	3.136	0.080	1.995	1.267	0.344
1152	chr10	79149956	79190430	+	0	NA	intron (NM_001322832, intron 1 of 27)	intron (NM_001322832, intron 1 of 27)	59563	NR_126365	101929286	Hs.568867	NR_126365		KCNMA1-AS3	-	KCNMA1 antisense RNA 3	ncRNA	1.072	nan	1.424	1.339	0.608	0.325	0.182	0.139	0.028	0.622	0.283	0.960	4.563	0.035	0.081	0.419	0.521	0.240	0.384	0.546	0.645	2.379	0.802	0.165	0.184	0.757	1.092	3.674	nan	0.437	0.348	0.421	0.633	1.077	1.118	0.427	nan	1.246	0.744	0.122	0.733	0.356	0.404	0.182	0.960	0.184	0.278	0.611	0.491
49	chr1	7005386	7026286	+	0	NA	intron (NM_015215, intron 3 of 22)	intron (NM_015215, intron 3 of 22)	170452	NR_038934	23261	Hs.397705	NM_015215	ENSG00000171735	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding	1.144	nan	0.794	0.639	0.507	0.213	0.294	0.133	0.085	0.121	0.095	0.224	2.471	0.161	0.112	0.229	0.190	0.270	0.351	0.972	0.883	0.264	0.072	0.289	0.272	0.267	nan	nan	3.447	nan	0.401	0.918	1.017	0.073	0.089	2.021	6.319	0.839	0.589	1.759	2.328	0.018	0.174	0.294	0.224	0.149	0.286	0.352	0.533
789	chr1	203219127	203301221	+	0	NA	Intergenic	Intergenic	3346	NR_117098	100506775	Hs.443859	NR_117097	ENSG00000231507	LINC01353	-	long intergenic non-protein coding RNA 1353	ncRNA	3.160	2.745	3.522	1.450	3.505	1.880	1.229	0.340	0.127	1.684	0.840	3.561	2.848	0.322	0.115	1.833	2.431	1.137	1.794	4.994	4.853	2.606	0.894	nan	nan	2.608	3.254	4.547	3.991	1.953	1.633	0.447	0.607	2.383	2.489	2.254	5.369	2.185	1.180	1.485	2.918	0.752	1.278	1.229	3.561	0.752	2.199	0.317	1.424
4684	chr2	207903681	207912255	+	0	NA	Intergenic	Intergenic	66829	NR_036227	100423036		NR_036227	ENSG00000253008	MIR2355	mir-2355	microRNA 2355	ncRNA	0.914	nan	0.850	0.171	3.990	2.100	0.594	0.175	0.095	4.046	1.807	0.627	0.977	0.153	0.053	0.363	0.369	0.191	0.267	0.267	0.336	1.797	0.932	0.385	0.348	0.431	0.741	1.317	1.064	0.336	0.127	0.175	0.155	3.191	3.549	0.422	0.673	1.940	0.838	0.130	0.072	0.809	0.056	0.594	0.627	0.033	0.209	0.023	0.088
7786	chr8	92077590	92086176	+	0	NA	promoter-TSS (NM_001286745)	promoter-TSS (NM_001286745)	534	NR_110439	100506365	Hs.153412	NR_110438	ENSG00000253738	OTUD6B-AS1	GS1-251I9.4	OTUD6B antisense RNA 1 (head to head)	ncRNA	nan	1.598	2.302	3.052	2.577	1.363	1.028	1.114	0.117	0.544	0.368	1.866	3.838	0.851	0.114	1.779	2.122	2.020	nan	3.688	3.372	3.241	1.476	5.375	5.535	2.162	2.597	10.631	12.193	1.917	1.876	1.683	2.870	2.913	2.765	1.739	3.017	1.291	0.876	1.324	1.545	0.431	0.656	1.028	1.866	0.201	1.190	0.818	0.677
6228	chr5	33996450	34014271	+	0	NA	intron (NM_001167595, intron 2 of 5)	intron (NM_001167595, intron 2 of 5)	2860	NM_203382	23600	Hs.508343	NM_014324	ENSG00000242110	AMACR	AMACRD|CBAS4|P504S|RACE|RM	alpha-methylacyl-CoA racemase	protein-coding	1.744	2.794	nan	9.070	1.574	0.688	0.669	2.417	0.482	2.668	1.814	4.819	3.562	0.907	0.169	1.186	1.517	1.237	1.632	3.910	3.699	6.608	3.722	1.525	1.438	2.406	3.117	4.321	5.193	3.803	3.531	1.166	2.166	2.292	2.054	1.012	1.994	4.243	2.024	0.612	2.070	0.572	0.423	0.669	4.819	0.493	3.856	0.877	0.826
2967	chr15	79164379	79167834	+	0	NA	intron (NM_001265604, intron 1 of 11)	intron (NM_001265604, intron 1 of 11)	775	NM_001265604	10933	Hs.374503	NM_006791	ENSG00000185787	MORF4L1	Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6	mortality factor 4 like 1	protein-coding	5.448	4.904	6.410	5.385	8.492	4.622	4.394	4.343	0.238	3.293	1.720	7.762	16.345	5.752	0.129	8.032	7.830	10.049	12.883	10.365	9.236	7.105	5.221	12.035	12.401	4.444	6.025	8.302	13.047	15.654	16.092	6.014	9.894	6.156	6.696	9.858	7.415	2.714	1.849	3.627	4.160	0.778	3.450	4.394	7.762	2.817	3.872	2.744	1.909
8418	chrX	152330750	152353775	+	0	NA	Intergenic	Intergenic	4003	NM_032882	84968	Hs.533301	NM_032882	ENSG00000235961	PNMA6A	MA6|PNMA6|PNMA6C	paraneoplastic Ma antigen family member 6A	protein-coding	0.317	2.852	0.468	1.001	0.253	0.175	0.499	0.033	0.028	0.131	0.072	0.075	2.137	0.142	0.030	0.099	0.100	0.200	0.230	0.559	0.717	0.369	0.131	0.097	0.074	0.088	0.151	0.053	0.062	0.418	0.360	0.259	0.324	0.046	0.028	0.083	0.216	0.811	0.422	4.054	1.849	0.033	0.024	0.499	0.075	0.130	0.013	0.141	0.011
2117	chr12	104606156	104622950	+	0	NA	intron (NM_001093771, intron 1 of 16)	intron (NM_001093771, intron 1 of 16)	4996	NM_001093771	7296	Hs.654922	NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR	thioredoxin reductase 1	protein-coding	0.762	1.679	nan	0.877	0.503	0.362	0.359	1.021	0.409	0.176	0.146	0.278	0.587	8.014	0.353	0.380	0.275	0.740	2.929	0.372	0.514	1.701	0.280	0.842	0.887	0.689	0.963	1.306	1.721	0.647	0.441	0.363	0.400	0.713	2.311	0.232	0.550	1.158	0.673	0.380	0.168	0.126	0.222	0.359	0.278	0.258	0.526	0.071	0.124
4860	chr20	14498399	14528304	+	0	NA	intron (NM_080676, intron 4 of 16)	intron (NM_080676, intron 4 of 16)	-21679	NR_104193	140848	Hs.570367	NR_104193	ENSG00000227927	MACROD2-IT1	C20orf68|NCRNA00227|bA467D7.4	MACROD2 intronic transcript 1	ncRNA	1.120	nan	0.695	0.158	0.238	0.124	0.188	0.214	0.139	0.078	0.095	0.116	0.317	0.037	0.079	0.595	0.407	0.173	0.280	0.346	0.377	0.387	0.174	0.272	0.266	4.834	4.645	0.427	0.424	0.672	0.371	0.101	0.168	0.136	0.164	0.259	0.662	0.476	0.525	0.013	0.057	0.022	0.057	0.188	0.116	0.468	0.042	0.043	0.149
7110	chr6	170333976	170348513	+	0	NA	Intergenic	MIRb|SINE|MIR	-134622	NR_125878	102724511	Hs.550045	NR_125878		LOC102724511	-	uncharacterized LOC102724511	ncRNA	nan	0.892	nan	0.449	1.106	0.409	0.686	0.072	0.011	0.237	0.231	5.809	1.476	0.067	0.095	0.573	0.769	0.439	0.849	nan	3.208	nan	0.989	0.983	1.132	0.079	0.152	nan	1.156	0.448	0.304	0.303	0.442	0.813	0.941	0.114	0.180	1.019	0.578	3.970	0.221	0.203	0.283	0.686	5.809	0.159	0.608	0.095	0.076
4398	chr2	70309708	70323281	+	0	NA	TTS (NM_006196)	TTS (NM_006196)	1909	NM_006196	5093	Hs.2853	NM_006196	ENSG00000169564	PCBP1	HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X	poly(rC) binding protein 1	protein-coding	nan	nan	5.746	7.506	10.045	6.002	6.203	1.921	0.213	3.633	1.576	7.268	9.262	3.443	0.194	8.457	6.869	6.836	9.393	11.539	12.850	8.657	7.810	12.374	13.365	5.545	6.337	10.557	13.342	7.654	6.809	7.088	9.233	4.593	5.363	8.705	7.048	nan	1.232	6.305	6.585	1.085	2.767	6.203	7.268	2.047	3.353	3.647	2.889
6262	chr5	51637050	51676050	+	0	NA	Intergenic	Intergenic	-427224	NM_015946	53918	Hs.644352	NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota homolog (Drosophila)	protein-coding	nan	nan	0.842	0.286	7.718	4.310	2.394	0.108	0.079	0.321	0.309	0.787	0.449	0.051	0.109	0.132	0.094	0.594	0.444	3.732	4.870	nan	0.422	0.061	0.063	0.545	0.683	0.298	0.276	nan	0.251	0.071	0.107	0.424	0.481	0.381	0.924	2.200	0.961	3.987	1.231	0.090	0.104	2.394	0.787	0.022	0.028	0.023	0.139
715	chr1	183771274	183890999	+	0	NA	intron (NM_001297670, intron 3 of 17)	intron (NM_001297670, intron 3 of 17)	56921	NM_001297672	23179	Hs.497148	NM_015149	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator like 1	protein-coding	nan	nan	1.493	0.220	0.303	0.157	0.367	1.497	0.211	0.193	0.217	0.063	0.649	0.137	0.120	2.690	3.347	9.880	7.884	0.556	nan	0.436	0.175	nan	1.689	1.644	2.143	0.518	0.467	0.428	0.272	2.048	3.097	0.282	0.352	1.190	nan	0.584	0.599	0.069	0.209	0.058	0.171	0.367	0.063	0.076	0.244	2.095	0.876
2201	chr12	125216534	125256983	+	0	NA	Intergenic	Intergenic	111761	NM_005505	949	Hs.731377	NM_005505	ENSG00000073060	SCARB1	CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1	scavenger receptor class B member 1	protein-coding	1.639	1.723	1.625	0.219	0.745	0.384	0.850	0.579	0.195	0.248	0.210	0.565	2.004	0.426	0.133	1.442	2.156	0.462	0.932	1.128	1.168	nan	0.344	0.425	0.475	2.682	3.220	0.829	1.170	4.630	3.781	0.761	0.916	0.548	0.833	1.262	3.469	1.533	0.952	1.258	1.276	0.249	0.099	0.850	0.565	1.063	0.307	0.690	0.987
3615	chr17	79446952	79462791	+	0	NA	Intergenic	CpG	25021	NR_037688	71	Hs.514581	NM_001614	ENSG00000184009	ACTG1	ACT|ACTG|BRWS2|DFNA20|DFNA26|HEL-176	actin gamma 1	protein-coding	1.785	2.404	2.928	1.865	2.128	1.171	1.938	0.844	0.297	0.650	0.430	2.347	3.605	1.146	0.101	4.202	5.301	1.104	1.438	4.490	3.498	3.087	0.946	1.753	2.083	nan	3.013	2.818	3.457	3.494	3.072	1.696	2.138	2.305	2.170	1.256	1.957	nan	0.976	2.633	2.378	0.609	0.822	1.938	2.347	0.783	4.179	0.613	0.629
23	chr1	1653980	1662163	+	0	NA	TTS (NM_182838)	TTS (NM_182838)	-2067	NM_033529	728642	Hs.651228	NM_024011	ENSG00000008128	CDK11A	CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA	cyclin dependent kinase 11A	protein-coding	3.121	nan	2.889	2.569	1.863	1.037	0.824	3.070	0.650	1.474	1.031	0.860	3.659	1.801	0.230	1.766	1.925	2.962	3.909	3.188	3.070	2.390	1.307	7.398	7.416	1.936	nan	nan	10.567	nan	2.143	1.089	1.568	1.334	1.678	2.240	3.238	1.769	0.986	1.387	1.274	0.270	0.514	0.824	0.860	0.688	0.930	0.950	0.735
364	chr1	70032380	70041921	+	0	NA	intron (NM_001330635, intron 1 of 26)	intron (NM_001330635, intron 1 of 26)	4282	NM_001330635	57554	Hs.479658	NM_020794	ENSG00000033122	LRRC7	DENSIN	leucine rich repeat containing 7	protein-coding	nan	0.762	0.917	0.644	0.854	0.537	0.645	0.248	0.063	0.556	0.306	0.147	4.976	0.887	0.109	0.419	0.255	0.283	0.568	2.927	nan	0.445	0.170	0.283	0.277	5.873	7.194	1.981	2.814	0.752	1.051	0.274	0.600	0.993	0.456	0.318	0.386	1.494	0.829	0.029	0.722	0.331	2.536	0.645	0.147	0.030	0.032	0.125	0.116
3069	chr16	18265339	18288289	+	0	NA	Intergenic	L2a|LINE|L2	149705	NM_001282511	101059953	Hs.636569	NM_001282511	ENSG00000214940	NPIPA8	LCR16a9	nuclear pore complex interacting protein family member A8	protein-coding	0.714	0.732	nan	0.504	0.286	0.126	0.378	0.093	0.106	0.062	0.089	0.086	3.729	0.065	0.091	0.325	0.234	0.156	0.108	0.319	0.436	0.236	0.152	0.178	0.137	0.221	0.341	2.062	2.327	nan	0.328	0.142	0.192	0.137	0.204	0.178	0.324	0.752	0.536	0.089	0.101	0.050	0.097	0.378	0.086	0.065	0.089	0.013	0.103
3931	chr19	1394613	1417065	+	0	NA	Intergenic	AluJr|SINE|Alu	-1729	NM_170711	26528	Hs.222510	NM_018959	ENSG00000071626	DAZAP1	-	DAZ associated protein 1	protein-coding	1.510	1.763	2.957	1.163	1.379	0.689	1.593	0.577	0.096	0.905	0.374	2.105	4.179	1.023	0.077	1.662	1.905	1.952	3.252	2.198	2.260	1.250	0.414	2.836	2.658	1.640	2.223	1.183	nan	2.209	2.147	1.633	2.560	1.332	1.565	1.194	1.375	1.329	0.685	0.774	1.740	0.429	0.489	1.593	2.105	0.468	0.943	0.967	0.595
2680	chr14	76287703	76301845	+	0	NA	intron (NM_015072, intron 28 of 31)	Tigger2a|DNA|TcMar-Tigger	153591	NM_003239	7043	Hs.592317	NM_003239	ENSG00000119699	TGFB3	ARVD|ARVD1|LDS5|RNHF|TGF-beta3	transforming growth factor beta 3	protein-coding	1.864	0.789	1.837	0.697	1.596	0.717	0.245	2.939	0.253	0.462	0.296	0.466	0.339	0.088	0.107	0.281	0.251	0.408	0.632	0.494	0.561	3.043	0.894	0.399	0.402	0.605	0.932	2.316	nan	1.347	0.677	0.267	0.284	1.149	1.237	0.481	1.081	5.709	nan	0.207	0.157	0.140	0.107	0.245	0.466	0.200	0.856	0.062	0.218
2957	chr15	75486139	75496044	+	0	NA	Intergenic	MER51A|LTR|ERV1	-3130	NM_015492	56905	Hs.17936	NM_015492	ENSG00000167173	C15orf39	-	chromosome 15 open reading frame 39	protein-coding	2.217	2.691	2.666	1.767	4.092	2.199	1.849	0.999	0.258	2.077	1.186	2.138	4.434	0.635	0.071	3.339	5.020	1.885	2.835	2.947	2.808	4.170	1.353	1.862	1.893	1.689	2.386	6.627	7.581	3.631	4.607	1.493	2.810	3.423	3.207	1.556	2.028	2.428	1.132	2.002	2.087	0.945	0.378	1.849	2.138	1.754	2.144	1.389	0.690
1845	chr12	14407909	14416487	+	0	NA	Intergenic	AluSx|SINE|Alu	-106368	NM_018179	55729	Hs.504856	NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding	2.497	1.548	1.352	5.786	1.842	0.822	4.728	1.144	0.244	0.635	0.492	4.723	2.886	9.618	0.186	0.840	1.295	6.368	7.501	nan	3.434	7.288	2.802	3.623	3.611	2.839	3.019	6.399	9.580	3.050	2.497	2.443	3.857	0.657	0.793	1.887	4.832	2.352	1.198	3.491	3.067	0.063	5.437	4.728	4.723	0.690	1.661	5.059	1.156
1678	chr11	117414517	117434152	+	0	NA	intron (NM_020693, intron 3 of 32)	L1MB3|LINE|L1	225763	NM_014956	22897	Hs.504009	NM_014956	ENSG00000110274	CEP164	NPHP15	centrosomal protein 164	protein-coding	0.576	0.679	0.566	0.116	0.333	0.229	0.462	0.038	0.016	0.217	0.160	0.416	0.572	0.059	0.083	1.600	nan	0.208	0.214	0.920	0.964	0.973	0.440	0.244	0.253	0.659	nan	0.883	0.800	0.448	0.323	1.501	2.169	0.282	0.191	0.366	0.693	0.708	0.580	5.493	0.381	0.044	0.447	0.462	0.416	0.078	0.062	1.235	0.308
1025	chr10	12725799	12736044	+	0	NA	intron (NM_020397, intron 3 of 9)	AluSq2|SINE|Alu	-35725	NR_039701	100616320		NR_039701	ENSG00000283699	MIR4481	-	microRNA 4481	ncRNA	nan	1.262	0.527	1.626	0.714	0.441	0.676	0.248	0.186	2.347	1.218	2.348	0.964	0.021	0.083	0.361	0.414	0.222	0.360	0.893	1.406	12.750	12.741	0.167	0.104	0.485	0.687	3.336	6.218	0.202	0.105	0.147	0.342	3.056	3.037	0.211	0.505	1.029	0.606	0.269	0.466	0.624	0.070	0.676	2.348	0.057	0.110	0.038	0.134
4692	chr2	210245245	210269009	+	0	NA	Intergenic	Intergenic	-31644	NM_001039538	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding	nan	2.141	nan	0.194	0.657	0.403	0.343	0.298	0.068	0.096	0.158	0.241	0.544	3.762	0.156	0.309	0.165	0.215	0.593	0.252	0.318	0.914	0.277	0.369	0.362	0.442	0.640	1.044	nan	0.445	0.199	0.111	0.236	0.114	0.229	0.267	0.449	0.323	0.334	0.111	0.116	0.030	0.135	0.343	0.241	0.027	0.107	0.033	0.062
8291	chr9	131485126	131498259	+	0	NA	TTS (NM_006336)	TTS (NM_006336)	4951	NR_046240	100506100	Hs.62946	NR_046240	ENSG00000223478	LOC100506100	-	uncharacterized LOC100506100	ncRNA	nan	1.224	1.836	1.335	0.936	0.432	0.645	0.490	0.208	0.440	0.251	0.846	2.404	0.503	0.059	0.768	0.905	1.299	1.614	2.712	2.463	nan	0.441	0.827	0.950	0.789	1.244	1.950	2.706	6.091	6.434	0.464	0.516	1.165	1.258	1.168	2.633	1.380	0.586	0.527	0.506	0.227	0.562	0.645	0.846	0.962	0.712	0.106	0.627
4375	chr2	58094260	58135443	+	0	NA	Intergenic	Intergenic	-19935	NM_001288837	7444	Hs.715298	NM_006296	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding	0.839	nan	0.760	0.428	2.946	1.549	0.233	0.196	0.093	1.786	1.464	2.676	3.689	0.055	0.124	2.119	2.462	5.780	5.017	3.485	4.238	3.713	2.085	0.306	0.332	5.107	5.275	1.856	1.755	1.126	0.716	1.609	2.560	0.991	0.706	0.536	1.134	2.363	1.245	0.560	2.129	0.264	0.308	0.233	2.676	0.186	0.810	1.448	0.235
2478	chr13	115044497	115048979	+	0	NA	promoter-TSS (NM_080687)	promoter-TSS (NM_080687)	-321	NM_080687	65110	Hs.533855	NM_023011	ENSG00000169062	UPF3A	HUPF3A|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	5.556	6.111	6.993	11.102	6.355	3.642	11.293	2.805	0.686	2.061	1.211	8.618	14.801	4.960	0.189	13.216	12.916	6.588	9.856	11.155	10.647	11.892	5.516	8.592	9.050	1.529	1.929	9.894	13.565	9.459	9.986	6.318	10.815	10.754	12.180	10.035	7.843	1.632	0.843	11.802	12.229	2.354	6.678	11.293	8.618	2.141	4.330	4.281	2.344
7498	chr7	135741953	135761113	+	0	NA	Intergenic	Intergenic	-89329	NM_001128619	767558	Hs.602015	NM_001128619	ENSG00000267697	LUZP6	MPD6|MTPNUT	leucine zipper protein 6	protein-coding	nan	nan	nan	0.264	0.777	0.403	0.174	0.414	0.092	0.236	0.136	0.068	0.331	0.085	0.183	0.544	0.603	0.403	0.245	0.373	0.426	nan	2.765	0.230	0.224	0.155	nan	0.773	0.932	nan	0.182	0.261	0.340	2.062	1.791	0.731	2.034	2.687	nan	0.247	0.163	0.451	0.095	0.174	0.068	0.045	0.584	0.042	0.303
2340	chr13	72175844	72199581	+	0	NA	intron (NM_080759, intron 4 of 11)	L2b|LINE|L2	253618	NM_080759	1602	Hs.129452	NM_004392	ENSG00000276644	DACH1	DACH	dachshund family transcription factor 1	protein-coding	nan	1.230	0.863	0.171	2.508	1.047	1.924	0.057	0.068	0.487	0.271	0.704	0.613	0.018	0.064	0.712	0.645	0.203	0.391	1.591	1.819	nan	1.213	0.144	0.155	1.116	1.082	0.414	0.453	nan	2.155	0.271	0.501	1.280	2.433	0.890	nan	0.252	0.187	0.108	0.438	0.393	1.708	1.924	0.704	0.390	0.051	0.144	0.444
8079	chr9	19125791	19131843	+	0	NA	Intergenic	Intergenic	-1213	NM_001122	123	Hs.3416	NM_001122	ENSG00000147872	PLIN2	ADFP|ADRP	perilipin 2	protein-coding	nan	10.413	0.712	0.146	1.250	0.414	1.216	1.110	0.238	0.328	0.303	0.614	0.962	2.529	0.110	0.118	0.203	1.905	2.614	0.733	0.811	3.539	1.978	0.849	0.893	1.204	1.686	4.086	5.970	1.801	1.740	0.940	2.108	5.238	4.212	0.399	0.548	1.706	1.464	0.136	0.148	0.862	0.445	1.216	0.614	0.223	0.516	0.649	0.205
3555	chr17	73256373	73259368	+	0	NA	promoter-TSS (NM_014001)	promoter-TSS (NM_014001)	121	NM_015971	51081	Hs.71787	NM_015971	ENSG00000125445	MRPS7	MRP-S|MRP-S7|RP-S7|RPMS7|S7mt|bMRP27a	mitochondrial ribosomal protein S7	protein-coding	8.460	5.601	8.486	8.594	9.727	5.444	5.371	6.178	0.595	4.477	1.648	6.798	15.347	6.163	0.204	16.135	12.434	11.217	16.410	10.846	12.556	11.741	9.030	21.354	23.258	nan	9.516	11.923	18.451	18.570	17.028	10.166	15.793	7.929	12.421	13.157	9.269	nan	3.352	2.640	5.733	1.630	3.062	5.371	6.798	1.232	5.599	2.449	2.438
720	chr1	185035662	185041387	+	0	NA	intron (NM_007212, intron 1 of 6)	AluJb|SINE|Alu	23973	NM_007212	6045	Hs.591490	NM_007212	ENSG00000121481	RNF2	BAP-1|BAP1|DING|HIPI3|RING1B|RING2	ring finger protein 2	protein-coding	nan	nan	1.207	0.109	0.280	0.339	0.223	0.250	0.198	0.301	0.200	0.140	0.469	0.091	0.048	0.519	0.328	9.531	9.214	0.458	nan	0.318	0.180	nan	0.513	0.714	1.055	0.470	0.393	0.375	0.290	0.691	1.055	0.120	0.186	0.793	nan	0.420	0.494	0.141	0.170	0.034	0.188	0.223	0.140	0.051	0.018	0.223	0.235
4430	chr2	89864862	89880154	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	760624	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA	nan	17.058	nan	6.063	8.654	5.058	6.083	3.191	17.469	3.664	8.972	2.813	11.142	2.271	8.491	8.104	3.255	3.121	4.029	6.806	10.480	3.283	2.626	4.731	4.459	7.116	9.475	4.763	4.568	9.065	2.640	2.994	4.911	2.557	4.865	3.668	5.907	3.396	5.335	0.823	6.011	2.728	1.691	6.083	2.813	1.639	1.801	1.849	2.612
460	chr1	115973442	115991575	+	0	NA	Intergenic	Intergenic	-101651	NM_002506	4803	Hs.2561	NM_002506	ENSG00000134259	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor	protein-coding	nan	1.204	0.828	0.080	2.019	1.211	0.760	0.252	0.062	0.103	0.103	1.772	1.213	0.024	0.146	0.284	0.163	1.055	1.465	3.813	nan	1.183	0.389	0.639	0.652	0.208	0.336	0.582	0.678	0.417	0.170	0.362	0.424	0.044	0.087	0.229	0.279	2.872	1.486	1.638	1.075		0.057	0.760	1.772	0.149	0.463	0.175	0.185
2449	chr13	111558523	111570879	+	0	NA	intron (NR_104586, intron 1 of 4)	intron (NR_104586, intron 1 of 4)	2753	NR_104586	55608	Hs.525163	NM_017664	ENSG00000088448	ANKRD10	-	ankyrin repeat domain 10	protein-coding	2.749	nan	2.944	4.054	3.258	1.621	3.430	1.503	0.156	0.916	0.494	2.499	4.969	1.674	0.105	6.379	6.390	7.166	13.378	4.315	4.140	5.557	2.041	4.475	4.289	0.663	0.770	4.013	6.273	3.245	3.884	3.060	6.650	3.781	4.382	3.771	3.374	0.490	0.336	3.337	5.049	0.918	3.906	3.430	2.499	0.565	2.013	1.723	0.794
4627	chr2	180127067	180141097	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-4732	NM_178123	91404	Hs.30977	NM_178123	ENSG00000187231	SESTD1	SOLO	SEC14 and spectrin domain containing 1	protein-coding	2.058	2.251	1.965	3.484	3.671	2.050	1.021	1.147	0.057	1.422	0.686	1.904	4.092	0.410	0.114	1.394	1.381	1.591	2.273	2.200	2.033	4.612	2.123	2.432	2.437	nan	1.231	6.467	9.805	1.140	1.120	0.697	1.468	4.404	4.262	1.224	nan	2.246	1.240	0.740	1.562	0.770	0.776	1.021	1.904	0.278	0.650	0.221	0.133
244	chr1	40404541	40430028	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-3500	NM_001136493	84879	Hs.655177	NM_032793	ENSG00000168389	MFSD2A	MCPH15|MFSD2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	12.221	1.380	nan	5.473	0.978	0.572	9.449	0.250	0.158	0.343	0.279	2.175	1.735	0.183	0.121	0.648	0.885	0.676	1.293	3.435	2.422	1.077	0.263	0.626	0.684	0.843	nan	nan	4.693	0.547	0.518	0.754	nan	0.227	0.179	0.658	1.040	1.612	1.136	1.557	0.882	0.038	8.110	9.449	2.175	0.247	0.266	0.237	0.243
4107	chr19	47273220	47302028	+	0	NA	intron (NM_001145145, intron 1 of 6)	MIR|SINE|MIR	510	NM_001145145	6510	Hs.631582	NM_005628	ENSG00000105281	SLC1A5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC	solute carrier family 1 member 5	protein-coding	2.362	1.945	1.507	3.335	0.898	0.517	1.345	1.320	0.308	0.703	0.219	1.617	3.084	2.262	0.172	1.218	1.498	0.610	0.971	1.411	1.474	1.491	0.545	3.866	4.122	1.649	2.175	3.813	4.141	1.452	1.699	1.176	2.013	0.298	0.485	1.618	3.812	1.315	0.781	2.631	2.711	0.068	0.569	1.345	1.617	0.445	0.739	0.706	0.873
7723	chr8	65517570	65531941	+	0	NA	intron (NM_004820, intron 4 of 5)	L3|LINE|CR1	31960	NM_152414	27319	Hs.388788	NM_152414	ENSG00000180828	BHLHE22	BHLHB5|Beta3|Beta3a|CAGL85|TNRC20	basic helix-loop-helix family member e22	protein-coding	1.635	0.746	0.760	0.085	1.072	0.580	0.151	0.094	0.166	0.182	0.215	0.167	0.276	0.053	0.085	0.279	0.228	0.333	0.488	0.469	0.733	4.045	1.986	0.203	0.144	1.303	nan	0.097	0.121	nan	0.361	0.168	0.221	2.980	3.606	0.210	0.339	3.157	1.404	0.020	0.024	1.405	0.104	0.151	0.167	0.040	0.138	0.074	0.026
8411	chrX	131606427	131627356	+	0	NA	intron (NM_001170704, intron 1 of 8)	intron (NM_001170704, intron 1 of 8)	7105	NM_001170704	55796	Hs.105134	NM_018388	ENSG00000076770	MBNL3	CHCR|MBLX|MBLX39|MBXL	muscleblind like splicing regulator 3	protein-coding	1.852	2.992	1.823	2.497	5.283	2.517	1.498	0.071	0.054	0.705	0.436	2.593	1.755	0.016	0.036	3.026	3.474	2.478	2.593	7.567	6.190	3.162	1.198	1.828	1.776	0.144	0.199	3.232	4.213	1.870	2.123	1.264	1.970	0.325	0.464	0.337	0.279	2.013	1.073	0.705	0.927	0.095	1.289	1.498	2.593	0.181	0.680	0.974	0.272
4838	chr20	7340092	7351637	+	0	NA	intron (NR_110610, intron 2 of 2)	THE1B-int|LTR|ERVL-MaLR	-6391	NR_107029	102465865		NR_107029	ENSG00000278159	MIR8062	hsa-mir-8062	microRNA 8062	ncRNA	0.749	1.266	0.573	0.160	0.298	0.124	0.476	0.051	0.042	0.284	0.176	0.155	0.288	0.028	0.084	0.488	0.377	0.218	0.298	0.337	0.372	7.106	1.730	0.200	0.219	0.214	0.313	0.830	0.475	0.541	0.183	0.144	0.347	2.402	4.645	0.107	0.163	0.985	0.602	0.049	0.046	0.462	0.040	0.476	0.155		0.963	0.034	0.031
2811	chr14	106853230	106858845	+	0	NA	Intergenic	L1PA2|LINE|L1	-82408	NR_027457	338005	Hs.322826	NR_027457	ENSG00000270816	LINC00221	C14orf98|NCRNA00221	long intergenic non-protein coding RNA 221	ncRNA	0.652	0.521	0.417	0.089	0.201	0.142	0.470	0.615	0.344	0.057	0.087	1.281	0.216	0.039	0.112	0.467	0.470	0.048	0.091	0.235	0.249	11.661	5.039	1.046	1.055	0.473	0.809	2.398	3.994	0.337	0.096	0.306	0.361	2.730	2.248	0.109	0.081	0.067	0.128	0.010	0.236	0.714	0.340	0.470	1.281		1.490	0.209	
6672	chr6	25623078	25674986	+	0	NA	Intergenic	Intergenic	-3397	NM_006998	10590	Hs.116428	NM_006998	ENSG00000079689	SCGN	CALBL|DJ501N12.8|SECRET|SEGN|setagin	secretagogin, EF-hand calcium binding protein	protein-coding	1.098	1.110	nan	1.644	0.373	0.164	0.448	0.123	0.093	1.245	0.451	0.588	nan	0.044	0.131	0.856	0.912	0.168	nan	0.778	0.812	nan	1.351	0.255	0.250	0.744	1.077	2.729	2.354	0.466	0.233	0.257	0.455	3.037	3.584	0.562	1.133	2.147	1.117	0.095	0.597	0.703	0.353	0.448	0.588	0.159	1.477	0.202	0.222
5149	chr21	44435823	44458102	+	0	NA	intron (NM_004571, intron 9 of 10)	intron (NM_004571, intron 9 of 10)	41552	NM_001321072	875	Hs.533013	NM_000071	ENSG00000160200	CBS	HIP4	cystathionine-beta-synthase	protein-coding	nan	0.674	1.036	0.122	0.322	0.170	0.184	0.122	0.079	0.090	0.090	0.107	0.463	0.087	0.081	0.916	1.221	4.522	7.535	0.452	0.501	nan	0.111	0.397	0.451	0.489	nan	0.368	0.483	0.510	0.316	0.344	0.482	0.109	0.124	0.384	0.741	0.617	0.466	0.175	0.158	0.022	0.079	0.184	0.107	0.031	0.046	0.084	0.105
4901	chr20	25250824	25264119	+	0	NA	intron (NM_002862, intron 6 of 19)	intron (NM_002862, intron 6 of 19)	28765	NM_002862	5834	Hs.368157	NM_002862	ENSG00000100994	PYGB	GPBB	glycogen phosphorylase B	protein-coding	0.967	1.717	nan	0.891	0.270	0.084	0.202	0.158	0.073	0.741	0.383	0.472	0.837	0.041	0.052	0.728	0.969	0.316	0.489	1.117	0.787	2.587	0.571	0.320	0.348	1.430	2.044	5.264	4.543	1.156	1.164	0.729	1.075	0.313	0.520	0.242	0.561	2.295	1.356	3.320	2.017	0.137	0.085	0.202	0.472	0.235	3.301	0.277	0.168
6348	chr5	87062264	87091642	+	0	NA	Intergenic	Intergenic	-368103	NM_001239	902	Hs.292524	NM_001239	ENSG00000134480	CCNH	CAK|CycH|p34|p37	cyclin H	protein-coding	0.787	1.233	0.691	0.075	0.229	0.055	0.074	0.227	0.060	0.058	0.092	0.025	0.252	0.037	0.104	0.171	0.152	0.317	0.303	0.166	0.173	0.178	0.094	0.179	0.192	0.948	1.133	0.251	0.278	0.467	0.190	0.089	0.176	10.283	12.275	0.164	nan	0.554	0.428	0.007	0.090	2.933	0.109	0.074	0.025		0.045	0.047	0.093
1386	chr11	35832819	35844330	+	0	NA	Intergenic	Intergenic	-126957	NM_174902	143458	Hs.745134	NM_174902	ENSG00000179241	LDLRAD3	LRAD3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.832	1.237	nan	2.167	1.116	0.543	0.436	0.260	0.112	0.873	0.475	5.220	0.949	0.076	0.104	0.696	0.634	1.130	2.470	4.278	4.329	3.375	1.361	0.546	0.591	1.103	1.791	1.307	1.255	1.005	1.017	0.263	0.425	2.352	1.763	0.642	nan	1.876	0.872	0.158	0.223	0.685	0.332	0.436	5.220	0.228	0.273	0.138	0.377
1536	chr11	77732550	77757875	+	0	NA	intron (NM_001203261, intron 2 of 2)	AluJo|SINE|Alu	-10892	NM_023930	65987	Hs.709780	NM_023930	ENSG00000151364	KCTD14	-	potassium channel tetramerization domain containing 14	protein-coding	nan	1.832	1.208	0.991	1.210	0.595	1.611	1.005	0.287	0.848	0.425	2.035	3.603	0.232	0.133	0.665	1.473	0.484	1.043	4.338	4.700	2.494	0.903	0.877	1.031	2.650	3.522	1.607	2.097	0.996	0.951	0.418	0.488	3.102	3.224	0.359	0.716	2.543	1.450	2.997	0.369	0.516	0.235	1.611	2.035	0.399	1.475	0.075	0.127
7851	chr8	103724116	103760650	+	0	NA	Intergenic	Intergenic	-74253	NM_005655	7071	Hs.435001	NM_005655	ENSG00000155090	KLF10	EGR-alpha|EGRA|TIEG|TIEG1	Kruppel like factor 10	protein-coding	1.705	nan	nan	0.561	0.574	0.325	0.302	0.891	0.211	0.138	0.093	0.276	1.003	0.098	0.062	0.345	0.382	0.242	0.361	0.858	1.012	nan	0.485	0.629	0.643	0.592	nan	3.192	nan	nan	0.817	0.359	0.429	0.317	0.415	0.687	nan	1.800	0.974	0.549	0.175	0.058	0.181	0.302	0.276	0.184	2.677	0.082	0.469
452	chr1	112489731	112524542	+	0	NA	intron (NM_004980, intron 2 of 7)	intron (NM_004980, intron 2 of 7)	24641	NM_172198	3752	Hs.666367	NM_004980	ENSG00000171385	KCND3	BRGDA9|KCND3L|KCND3S|KSHIVB|KV4.3|SCA19|SCA22	potassium voltage-gated channel subfamily D member 3	protein-coding	nan	1.730	1.526	1.319	0.409	0.161	0.508	0.101	0.046	0.265	0.100	0.041	2.172	0.062	0.109	0.296	0.248	0.160	0.191	0.573	nan	1.981	0.718	0.133	0.151	1.742	2.303	0.937	1.297	0.554	0.443	0.287	0.392	0.074	0.099	0.300	0.537	3.848	1.726	1.805	1.019	0.008	0.094	0.508	0.041	0.466	0.808	0.054	0.145
295	chr1	48986704	48997197	+	0	NA	Intergenic	MIRb|SINE|MIR	-54070	NM_019073	54558	Hs.538103	NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding	nan	2.029	nan	0.921	6.765	3.614	0.667	0.093	0.138	3.002	0.795	3.991	11.126	0.041	0.109	0.300	0.509	0.178	0.244	3.934	3.333	1.660	0.505	0.172	0.182	0.387	nan	nan	1.192	0.442	0.330	0.332	nan	3.115	3.582	0.930	3.671	3.033	1.743	2.857	0.885	0.935	1.835	0.667	3.991	0.389	1.082	0.095	0.532
7051	chr6	153300923	153307881	+	0	NA	promoter-TSS (NM_012177)	promoter-TSS (NM_012177)	-185	NM_012177	26271	Hs.520506	NM_012177	ENSG00000112029	FBXO5	EMI1|FBX5|Fbxo31	F-box protein 5	protein-coding	nan	4.018	4.111	7.001	6.748	3.656	6.260	2.051	0.359	1.899	1.041	5.999	12.577	5.310	0.164	5.944	5.340	5.773	6.672	11.151	nan	9.894	6.562	8.700	9.003	3.479	4.087	4.324	7.643	11.958	13.694	2.374	5.388	9.338	10.347	6.452	nan	2.071	0.875	6.669	4.081	2.396	3.043	6.260	5.999	1.543	3.353	1.424	3.540
3956	chr19	7174465	7198961	+	0	NA	intron (NM_001079817, intron 2 of 20)	AluSg|SINE|Alu	107600	NM_001079817	3643	Hs.465744	NM_000208	ENSG00000171105	INSR	CD220|HHF5	insulin receptor	protein-coding	0.989	1.254	1.486	0.616	0.577	0.263	0.290	0.076	0.158	0.333	0.304	2.861	1.142	0.339	0.085	0.491	0.580	0.414	0.672	2.739	3.790	0.946	0.170	0.144	0.124	0.442	0.751	4.075	nan	1.083	0.817	0.242	0.272	0.095	0.114	0.443	1.094	2.247	0.921	0.477	0.294	0.031	0.178	0.290	2.861	0.112	0.283	0.133	0.342
7377	chr7	92665522	92685214	+	0	NA	Intergenic	Intergenic	71968	NM_001193307	54809	Hs.65641	NM_017654	ENSG00000205413	SAMD9	C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2	sterile alpha motif domain containing 9	protein-coding	nan	0.595	nan	0.111	0.207	0.098	0.316	0.137	0.123	0.103	0.088	0.104	0.229	4.695	0.239	0.369	0.229	0.305	0.430	0.210	0.290	0.613	0.182	0.469	0.436	0.222	0.381	0.281	0.272	0.501	0.252	0.281	0.348	0.057	0.112	0.378	nan	0.448	0.569	0.038	0.082	0.005	0.036	0.316	0.104	0.060	0.057	0.060	0.081
1618	chr11	107799091	107801174	+	0	NA	intron (NM_017516, intron 1 of 1)	intron (NM_017516, intron 1 of 1)	931	NM_017516	54734	Hs.354906	NM_017516	ENSG00000179331	RAB39A	RAB39	RAB39A, member RAS oncogene family	protein-coding	7.627	6.613	0.710	5.746	6.585	3.361	6.727	1.543	0.027	3.224	2.041	3.837	15.703	3.359	0.140	24.656	27.378	2.113	3.607	14.122	11.023	9.152	3.938	0.679	0.639	9.990	12.921	9.357	14.946	16.281	20.106	8.135	16.415	11.350	9.565	8.531	6.899	4.821	2.759	7.154	5.071	3.077	5.323	6.727	3.837	2.999	2.974	3.963	3.377
77	chr1	10610547	10622496	+	0	NA	intron (NM_004565, intron 3 of 8)	intron (NM_004565, intron 3 of 8)	81518	NM_004565	5195	Hs.149983	NM_004565	ENSG00000142655	PEX14	NAPP2|PBD13A|Pex14p|dJ734G22.2	peroxisomal biogenesis factor 14	protein-coding	1.100	0.973	nan	1.707	2.639	1.354	1.212	0.197	0.179	0.274	0.162	0.933	0.733	0.198	0.139	0.906	1.395	0.402	0.480	1.103	1.156	0.454	0.220	0.555	nan	0.651	nan	6.179	4.990	nan	0.662	2.170	1.910	0.216	0.201	0.437	1.003	0.870	0.714	0.981	5.621	0.008	0.733	1.212	0.933	0.709	0.136	1.441	0.196
541	chr1	151680877	151694405	+	0	NA	intron (NM_001172649, intron 1 of 11)	intron (NM_001172649, intron 1 of 11)	1151	NM_001172648	11189	Hs.26047	NM_007185	ENSG00000159409	CELF3	BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4	CUGBP, Elav-like family member 3	protein-coding	nan	nan	1.499	0.485	0.642	0.383	4.075	0.213	0.107	0.716	0.416	1.155	4.421	0.101	0.123	1.007	1.441	0.196	0.309	4.046	nan	2.334	1.114	0.338	0.400	1.384	2.149	2.756	4.403	3.051	2.862	1.497	2.054	1.091	0.821	4.338	9.366	1.601	1.380	1.026	1.940	0.148	0.244	4.075	1.155	0.900	1.352	1.850	3.850
6873	chr6	94001706	94019144	+	0	NA	intron (NM_004440, intron 5 of 16)	intron (NM_004440, intron 5 of 16)	118875	NM_001288630	2045	Hs.73962	NM_004440	ENSG00000135333	EPHA7	EHK-3|EHK3|EK11|HEK11	EPH receptor A7	protein-coding	nan	0.929	nan	1.045	1.806	0.901	0.408	0.073	0.065	0.931	0.633	0.540	0.411	0.050	0.104	0.486	0.459	0.166	0.245	0.588	0.814	nan	2.350	0.861	0.750	0.496	nan	0.540	0.499	nan	0.204	0.101	0.174	1.866	2.295	0.220	0.584	0.362	0.364	0.058	0.066	0.279	0.069	0.408	0.540	0.011	0.146	0.022	0.134
3890	chr18	71422022	71428656	+	0	NA	Intergenic	L2|LINE|L2	389660	NM_152676	201456	Hs.664011	NM_152676	ENSG00000141665	FBXO15	FBX15	F-box protein 15	protein-coding	nan	nan	1.166	0.344	0.638	0.218	1.294	0.034	0.024	0.189	0.113	0.109	0.770	0.061	0.052	0.350	0.194	0.144	0.332	1.073	nan	14.940	2.995	0.165	0.215	0.087	0.236	1.958	nan	0.358	0.261	0.106	0.105	1.414	1.426	0.082	0.241	0.834	0.821	0.009	0.040	0.087	0.437	1.294	0.109	0.044	0.229	0.059	0.053
8072	chr9	16568364	16587617	+	0	NA	intron (NM_001317939, intron 3 of 6)	intron (NM_001317939, intron 3 of 6)	292796	NM_017637	54796	Hs.656581	NM_017637	ENSG00000173068	BNC2	BSN2	basonuclin 2	protein-coding	nan	nan	0.794	0.150	0.245	0.183	0.526	0.320	0.118	0.081	0.146	0.062	0.514	0.566	0.087	0.265	0.131	0.582	0.372	0.824	0.986	0.152	0.126	0.169	0.142	3.156	3.594	0.100	0.099	0.497	0.306	0.555	0.629	0.811	0.713	0.270	0.566	1.423	1.049	0.026	0.148	0.282	0.164	0.526	0.062	0.108	0.063	0.371	0.071
897	chr1	226294995	226301506	+	0	NA	Intergenic	CpG	47822	NR_002315	440926	Hs.533624	NR_002315		H3F3AP4	p13	H3 histone, family 3A, pseudogene 4	pseudo	4.887	nan	14.163	4.473	3.557	1.918	2.122	1.127	0.322	3.581	1.587	3.295	4.169	1.599	0.091	1.438	2.323	3.292	5.278	6.928	nan	5.294	1.755	5.393	5.011	2.006	2.504	6.083	9.635	3.130	3.722	0.674	1.162	2.479	1.744	3.520	6.002	1.816	1.193	2.597	0.914	0.568	0.366	2.122	3.295	0.238	2.981	0.501	1.864
7897	chr8	119906899	119912638	+	0	NA	Intergenic	Intergenic	54615	NM_002546	4982	Hs.81791	NM_002546	ENSG00000164761	TNFRSF11B	OCIF|OPG|PDB5|TR1	TNF receptor superfamily member 11b	protein-coding	nan	nan	1.604	0.325	0.328	0.328	0.068	0.176	0.028	0.273	0.212	0.113	0.772		0.094	0.218	0.215	0.311	0.422	0.427	0.575	nan	1.821	0.720	nan	0.578	nan	0.583	0.375	0.409	0.209	0.166	0.346	1.378	3.840	0.281	0.733	1.265	0.642	0.010	0.124	0.545	0.013	0.068	0.113		4.492	0.087	0.086
3671	chr18	13498577	13515184	+	0	NA	intron (NM_181481, intron 3 of 5)	Tigger6a|DNA|TcMar-Tigger	46934	NR_049822	100847080		NR_049822	ENSG00000266146	MIR5190	-	microRNA 5190	ncRNA	1.323	1.616	0.587	0.691	2.485	1.139	0.498	0.195	0.078	1.011	0.362	6.250	1.844	0.069	0.106	0.521	0.611	0.339	0.709	4.066	3.564	0.503	0.255	0.559	0.647	0.084	0.166	1.173	2.083	0.448	0.292	0.316	0.506	1.584	0.516	0.142	0.363	1.626	1.161	1.214	1.311	0.185	0.288	0.498	6.250	0.082	1.124	0.507	0.207
3871	chr18	61630146	61640648	+	0	NA	Intergenic	L2|LINE|L2	-1866	NM_001031848	5271	Hs.368077	NM_002640	ENSG00000166401	SERPINB8	CAP2|PI8|PSS5	serpin family B member 8	protein-coding	1.124	2.138	0.990	3.366	1.759	0.962	3.214	0.700	0.060	0.890	0.435	0.539	4.114	0.600	0.112	0.666	0.744	3.671	4.939	6.600	5.581	9.938	4.355	4.674	nan	0.851	nan	5.494	6.503	1.929	1.880	0.204	0.362	4.480	3.533	0.608	0.799	4.084	2.744	2.209	0.930	0.696	0.726	3.214	0.539	0.427	1.460	0.038	0.142
3911	chr18	75519972	75527009	+	0	NA	Intergenic	Intergenic	182193	NR_104127	101927715	Hs.385670	NR_104127		LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA	nan	nan	0.553	0.102	4.062	1.914	1.356	0.065		0.247	0.361	8.739	0.661	0.030	0.079	0.402	0.092	0.143	0.308	9.293	nan	14.919	5.499	0.165	0.134	0.087	0.118	4.506	nan	0.234	0.105	0.092	0.039	0.572	0.409	0.091	0.200	1.222	0.573	0.052	0.972	0.014	0.394	1.356	8.739		0.116	0.070	0.053
7231	chr7	29417186	29427963	+	0	NA	intron (NM_001293069, intron 4 of 13)	intron (NM_001293069, intron 4 of 13)	-96754	NM_001293076	1124	Hs.654611	NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding	1.588	1.378	2.887	1.108	3.067	1.544	0.286	0.126	0.119	0.852	0.406	0.960	0.496	0.071	0.149	0.562	0.527	0.194	nan	0.374	0.467	4.452	2.356	0.671	0.787	0.126	0.305	0.591	0.869	0.341	0.147	0.356	0.571	1.753	3.584	0.427	nan	3.658	1.277	0.082	0.108	0.294	2.088	0.286	0.960	0.125	0.133	0.120	0.463
2584	chr14	50358515	50363332	+	0	NA	exon (NM_001663, exon 2 of 2)	exon (NM_001663, exon 2 of 2)	1187	NM_001663	382	Hs.525330	NM_001663	ENSG00000165527	ARF6	-	ADP ribosylation factor 6	protein-coding	9.724	4.826	6.486	7.390	5.752	3.437	6.106	4.005	0.605	2.549	1.172	6.193	12.814	4.377	0.281	5.507	4.563	8.307	11.563	10.075	9.413	7.924	4.231	13.981	13.867	4.059	5.112	8.314	12.513	14.029	14.591	4.707	8.085	8.192	8.500	5.381	6.364	nan	2.411	6.769	6.290	2.396	4.420	6.106	6.193	2.075	2.932	2.011	2.162
6473	chr5	139397480	139424083	+	0	NA	intron (NM_013983, intron 1 of 10)	intron (NM_013983, intron 1 of 10)	12103	NM_004883	9542	Hs.408515	NM_004883	ENSG00000158458	NRG2	DON1|HRG2|NTAK	neuregulin 2	protein-coding	1.671	1.367	nan	0.112	0.671	0.464	0.226	0.137	0.103	0.054	0.070	0.103	0.753	0.563	0.120	1.112	1.644	1.022	1.440	0.439	0.463	0.184	0.104	0.462	0.453	0.176	0.303	0.210	0.320	2.364	2.243	1.344	2.659	0.099	0.126	2.476	6.445	0.234	0.292	0.077	0.094	0.014	0.045	0.226	0.103	0.502	0.371	1.626	2.337
2722	chr14	88811849	88821265	+	0	NA	Intergenic	Intergenic	-23301	NM_021161	54207	Hs.560255	NM_021161	ENSG00000100433	KCNK10	K2p10.1|PPP1R97|TREK-2|TREK2	potassium two pore domain channel subfamily K member 10	protein-coding	nan	3.906	0.577	1.894	2.534	1.248	1.566	0.160	0.163	0.216	0.169	1.259	1.881	0.046	0.103	0.209	0.114	0.140	0.251	2.865	2.318	3.046	0.925	0.227	0.247	0.204	0.377	5.096	9.896	1.325	1.250	0.278	0.638	1.517	2.146	0.100	0.208	4.166	2.604	1.346	4.398	0.130	0.232	1.566	1.259	0.805	0.711	0.137	0.066
2923	chr15	68049454	68076199	+	0	NA	intron (NM_002757, intron 19 of 20)	intron (NM_002757, intron 19 of 20)	-49216	NM_001258024	390598	Hs.451224	NM_001031807	ENSG00000188779	SKOR1	CORL1|FUSSEL15|LBXCOR1	SKI family transcriptional corepressor 1	protein-coding	0.774	0.766	nan	0.141	0.401	0.287	0.475	0.138	0.088	0.286	0.190	0.479	0.422	0.041	0.083	1.307	1.602	2.922	0.681	0.689	0.646	nan	0.512	0.454	0.493	0.428	0.696	0.402	0.420	0.768	0.472	1.984	3.531	0.135	0.151	0.305	0.728	0.671	0.501	0.037	0.099	0.018	0.603	0.475	0.479	0.109	0.102	5.198	0.125
5200	chr22	23499835	23506909	+	0	NA	intron (NM_004914, intron 10 of 10)	intron (NM_004914, intron 10 of 10)	15859	NM_004914	9609	Hs.353024	NM_004914	ENSG00000100228	RAB36	-	RAB36, member RAS oncogene family	protein-coding	1.399	nan	0.991	0.177	0.144	0.091	0.149	0.054		0.327	0.243	3.139	0.329	0.130	0.081	0.452	0.584	0.340	0.504	3.390	3.410	4.029	1.045	0.389	0.508	1.406	2.174	0.279	0.341	0.621	0.372	0.238	0.249	0.905	0.945	0.218	0.281	5.027	2.755	0.047	0.163	0.136	2.025	0.149	3.139	0.898	0.100	0.057	
416	chr1	98834308	98856235	+	0	NA	Intergenic	Intergenic	169004	NR_046088	729987	Hs.683961	NR_046088	ENSG00000226053	LINC01776	-	long intergenic non-protein coding RNA 1776	ncRNA	nan	nan	0.778	0.074	0.569	0.344	0.208	0.312	0.096	0.036	0.076	0.044	0.319	0.287	0.142	0.341	0.228	0.235	0.453	0.413	nan	0.112	0.093	0.249	0.228	6.233	7.103	0.363	0.329	nan	0.204	0.160	0.238	0.207	0.191	0.371	0.667	0.499	0.531	0.013	0.068	0.117	0.032	0.208	0.044	0.018	0.083	0.055	0.222
2950	chr15	74419306	74430658	+	0	NA	intron (NM_001130136, intron 3 of 3)	intron (NM_001130136, intron 3 of 3)	2239	NM_020851	57611	Hs.254775	NM_020851	ENSG00000167178	ISLR2	LINX	immunoglobulin superfamily containing leucine rich repeat 2	protein-coding	2.077	3.343	0.715	0.718	2.257	0.919	2.218	0.841	0.227	0.777	0.648	3.805	6.575	0.411	0.043	0.478	0.530	0.555	0.839	4.831	4.157	1.777	0.554	0.116	0.119	2.105	2.586	1.534	2.413	2.109	1.912	0.412	0.524	1.458	1.115	1.184	1.669	0.876	0.483	3.667	3.141	0.572	1.517	2.218	3.805	0.490	0.692	0.131	0.316
100	chr1	15927858	15962417	+	0	NA	intron (NM_032341, intron 1 of 9)	intron (NM_032341, intron 1 of 9)	1184	NM_032341	84301	Hs.718857	NM_032341	ENSG00000197312	DDI2	-	DNA damage inducible 1 homolog 2	protein-coding	1.562	1.326	nan	3.281	0.718	0.376	0.608	0.461	0.187	0.524	0.429	0.406	2.056	0.621	0.137	0.714	0.862	0.962	1.519	1.895	1.896	1.232	0.423	1.139	nan	1.240	nan	2.904	4.559	nan	0.921	0.690	1.129	0.411	0.353	1.895	4.159	1.219	0.698	0.582	0.825	0.077	0.220	0.608	0.406	0.158	0.429	0.644	1.284
2405	chr13	101124443	101187290	+	0	NA	intron (NM_001178004, intron 21 of 22)	intron (NM_001178004, intron 21 of 22)	-22597	NR_047686	100885777	Hs.662554	NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA	1.083	1.741	0.919	0.482	0.433	0.239	1.599	0.136	0.090	1.162	0.619	0.712	1.867	0.056	0.085	0.683	0.528	0.269	0.372	1.854	1.841	3.676	1.346	0.185	0.201	0.701	nan	0.460	0.555	0.789	0.747	0.237	0.332	4.696	5.983	0.365	nan	0.676	0.342	0.811	0.925	1.534	0.274	1.599	0.712	0.360	0.501	0.091	0.096
4710	chr2	216971851	216983715	+	0	NA	exon (NM_021141, exon 2 of 21)	exon (NM_021141, exon 2 of 21)	3763	NM_021141	7520	Hs.388739	NM_021141	ENSG00000079246	XRCC5	KARP-1|KARP1|KU80|KUB2|Ku86|NFIV	X-ray repair cross complementing 5	protein-coding	nan	2.120	nan	2.825	3.559	1.689	2.686	1.712	0.095	1.336	0.668	2.988	5.654	2.195	0.103	5.181	4.041	4.784	6.777	4.813	5.412	4.515	2.861	8.494	9.866	3.891	4.810	6.626	nan	5.953	5.029	2.903	3.453	2.157	3.199	5.636	7.169	2.530	1.163	1.672	1.056	0.313	1.145	2.686	2.988	0.879	1.055	1.012	1.855
2232	chr13	21631841	21656017	+	0	NA	Intergenic	Intergenic	-8207	NM_014572	26524	Hs.78960	NM_014572	ENSG00000150457	LATS2	KPM	large tumor suppressor kinase 2	protein-coding	0.910	0.689	0.873	0.200	0.108	0.046	0.063	1.493	0.273	0.088	0.051	0.105	0.247	4.186	0.182	0.319	0.271	1.142	nan	0.572	0.554	0.213	0.071	0.316	0.315	1.080	1.469	0.312	0.370	0.687	0.367	0.237	0.349	0.040	0.052	0.174	0.290	0.592	0.561	0.021	0.100	0.024	0.072	0.063	0.105	0.052	0.029	0.045	0.035
8245	chr9	116056404	116065258	+	0	NA	intron (NM_145051, intron 1 of 1)	intron (NM_145051, intron 1 of 1)	489	NM_145051	138065	Hs.729641	NM_145051	ENSG00000165188	RNF183	-	ring finger protein 183	protein-coding	0.887	3.675	nan	6.416	2.273	1.431	0.188	0.102	0.058	1.826	0.755	6.642	3.337	0.067	0.058	0.502	0.968	0.298	0.496	9.662	10.996	5.517	2.248	0.587	0.715	0.135	0.300	9.359	nan	1.025	0.715	0.130	0.359	4.455	3.540	0.859	2.651	nan	1.766	5.978	4.303	0.841	0.226	0.188	6.642	0.389	0.412	0.055	0.812
3642	chr18	3441763	3467179	+	0	NA	intron (NM_173211, intron 1 of 2)	intron (NM_173211, intron 1 of 2)	699	NM_173211	7050	Hs.373550	NM_003244	ENSG00000177426	TGIF1	HPE4|TGIF	TGFB induced factor homeobox 1	protein-coding	2.814	3.127	3.594	1.384	0.877	0.492	0.481	2.424	0.253	0.913	0.534	2.719	nan	7.241	0.249	0.861	1.181	4.163	7.484	5.326	4.332	nan	0.190	3.049	3.039	0.928	nan	4.064	5.636	nan	0.884	0.902	2.178	4.263	4.886	1.689	nan	nan	1.473	3.700	2.031	0.810	1.713	0.481	2.719	0.436	1.225	1.133	1.245
5600	chr3	149373614	149379245	+	0	NA	promoter-TSS (NM_001168280)	promoter-TSS (NM_001168280)	432	NR_040250	100128025	Hs.594912	NR_040250	ENSG00000241313	WWTR1-AS1	-	WWTR1 antisense RNA 1	ncRNA	4.466	nan	nan	1.246	0.903	0.393	1.619	5.578	0.626	0.327	0.262	0.998	1.613	1.773	0.063	0.853	0.886	7.842	14.597	1.812	1.579	nan	0.684	2.965	3.025	2.864	nan	3.014	nan	nan	2.108	1.301	1.682	0.146	0.124	0.289	0.525	1.627	1.392	0.039	0.095	0.017	0.541	1.619	0.998	0.017	0.142	0.176	0.048
4646	chr2	191329111	191347514	+	0	NA	intron (NM_017694, intron 4 of 7)	L1PA4|LINE|L1	61156	NM_001142645	100131211	Hs.659824	NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding	1.539	nan	1.611	2.376	3.070	1.490	2.696	1.544	0.300	0.901	0.623	2.059	8.201	0.071	0.114	0.749	1.757	2.588	4.675	1.545	1.699	2.987	2.794	1.594	1.536	2.529	2.938	4.637	6.940	1.200	1.060	0.456	1.029	2.159	1.940	0.770	1.909	1.433	0.820	2.951	1.579	0.516	0.919	2.696	2.059	0.452	1.436	1.286	0.370
6308	chr5	70066815	70078555	+	0	NA	Intergenic	Intergenic	-123805	NM_021967	8293	Hs.726820	NM_021967	ENSG00000172058	SERF1A	4F5|FAM2A|H4F5|SERF1|SMAM1	small EDRK-rich factor 1A	protein-coding	3.073	6.294	2.739	0.663	0.585	0.465	0.428	0.230	0.220	0.564	0.348	0.311	0.396	0.230	0.230	0.619	0.649	1.201	1.147	0.856	0.943	nan	1.367	0.986	0.886	1.600	nan	0.910	1.530	1.803	1.293	0.333	0.545	2.565	2.589	0.588	1.101	1.447	0.945	0.241	0.388	1.064	0.309	0.428	0.311	0.156	0.131	0.084	0.189
2432	chr13	108460021	108501232	+	0	NA	intron (NR_046848, intron 1 of 1)	intron (NR_046848, intron 1 of 1)	7180	NR_046848	100874375	Hs.653972	NR_046848		FAM155A-IT1	-	FAM155A intronic transcript 1	ncRNA	0.818	1.102	0.670	0.278	0.582	0.233	0.504	0.034	0.078	0.179	0.159	0.495	1.379	0.056	0.088	0.666	0.478	0.166	0.262	0.903	0.866	0.142	0.122	0.071	0.066	0.316	nan	1.334	1.466	0.477	0.193	0.077	0.220	0.162	0.200	0.292	nan	0.256	0.198	0.180	3.064	0.018	0.151	0.504	0.495	0.009	0.272	0.043	0.171
7947	chr8	135934074	135944696	+	0	NA	Intergenic	Intergenic	77207	NR_125427	101927845	Hs.559609	NR_125427	ENSG00000251218	LOC101927845	-	uncharacterized LOC101927845	ncRNA	nan	0.627	4.475	0.149	0.303	0.301	0.227	0.070	0.241	0.161	0.130	0.304	0.503	0.016	0.077	0.258	0.224	0.266	0.258	0.383	0.410	8.939	1.551	nan	0.617	0.177	0.197	1.396	1.433	0.785	0.662	0.209	0.412	0.371	0.251	0.344	0.870	1.372	0.820	0.042	0.142	0.009	0.293	0.227	0.304	0.313	0.269	0.084	0.255
5289	chr22	43798559	43811125	+	0	NA	Intergenic	Intergenic	-3178	NM_001044370	758	Hs.159538	NM_001044370	ENSG00000186732	MPPED1	239AB|C22orf1|FAM1A	metallophosphoesterase domain containing 1	protein-coding	0.883	nan	0.318	1.022	1.868	1.023	0.601	0.070	0.052	0.075	0.074	2.683	4.696	0.353	0.099	0.415	0.543	0.127	0.531	1.195	1.252	0.721	0.271	0.086	0.109	0.685	nan	0.765	0.797	nan	0.936	0.559	0.677	0.997	0.677	0.102	0.131	0.569	0.587	4.416	1.830	0.229	0.088	0.601	2.683	0.551	0.089	0.275	0.019
2581	chr14	50098106	50110000	+	0	NA	Intergenic	AluSx1|SINE|Alu	-2105	NM_001083908	55172	Hs.231761	NM_018139	ENSG00000165506	DNAAF2	C14orf104|CILD10|KTU|PF13	dynein axonemal assembly factor 2	protein-coding	nan	nan	2.299	3.648	2.299	1.402	2.890	1.068	0.309	1.042	0.820	2.075	4.387	2.222	0.135	2.718	2.834	1.898	3.128	3.322	3.039	6.370	2.064	5.812	6.031	2.110	2.686	3.777	6.260	5.739	7.714	1.941	3.509	4.572	3.490	3.592	3.866	nan	2.028	2.292	3.821	0.680	2.093	2.890	2.075	0.711	1.991	1.066	1.404
6166	chr5	10245633	10253208	+	0	NA	promoter-TSS (NM_001306153)	promoter-TSS (NM_001306153)	601	NR_047669	134145	Hs.481569	NM_199133	ENSG00000150756	FAM173B	JS-2	family with sequence similarity 173 member B	protein-coding	nan	nan	9.050	8.093	4.569	2.290	1.660	5.294	0.960	4.145	2.211	4.817	nan	4.337	0.142	7.574	6.821	6.208	8.387	8.900	9.159	6.916	4.835	6.624	6.867	nan	11.658	8.228	10.643	12.334	12.286	4.781	7.812	5.778	7.123	5.422	nan	5.193	3.155	3.145	3.801	1.374	1.343	1.660	4.817	2.262	3.813	1.761	1.878
7355	chr7	81770507	81808770	+	0	NA	intron (NM_000722, intron 4 of 38)	HAL1b|LINE|L1	151145	NR_110077	101927356	Hs.571348	NR_110076	ENSG00000223770	LOC101927356	-	uncharacterized LOC101927356	ncRNA	1.082	0.803	0.981	0.776	3.341	1.637	0.288	0.169	0.055	0.773	0.578	0.603	1.640	0.127	0.166	0.482	0.364	0.194	0.192	0.582	0.781	3.199	1.832	0.133	0.117	1.150	1.366	1.491	2.110	0.617	0.390	0.200	0.303	2.578	3.531	1.180	nan	0.648	0.542	0.913	0.213	0.817	0.323	0.288	0.603	0.054	0.162	0.049	0.388
4760	chr2	235745996	235751368	+	0	NA	Intergenic	Intergenic	-111946	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3 domain binding protein 4	protein-coding	0.711	nan	0.548	0.199	0.330	0.238	1.203	0.753	0.150	0.202	0.075	0.558	0.452	0.080	0.108	0.439	0.380	11.558	13.680	0.204	0.336	0.384	0.256	0.375	0.298	0.304	0.717	0.475	nan	0.304	0.127	0.278	0.275	0.070	0.107	0.311	0.411	0.483	0.430	0.125	0.314		0.064	1.203	0.558	0.074	0.365	0.038	0.046
42	chr1	6050722	6072706	+	0	NA	intron (NM_001199861, intron 1 of 15)	intron (NM_001199861, intron 1 of 15)	-9181	NM_001291593	261734	Hs.462348	NM_015102	ENSG00000131697	NPHP4	POC10|SLSN4	nephrocystin 4	protein-coding	1.455	nan	1.391	0.367	0.813	0.547	0.583	0.331	0.051	0.599	0.386	0.656	2.284	0.394	0.083	1.048	1.768	0.643	0.994	3.765	3.032	1.398	0.509	1.328	1.386	0.760	nan	nan	8.803	nan	1.800	0.702	1.096	0.903	0.805	1.255	2.087	2.132	0.990	5.354	1.432	0.130	0.261	0.583	0.656	0.736	1.136	0.176	0.648
759	chr1	197236692	197257631	+	0	NA	intron (NR_047564, intron 1 of 11)	MLT1I|LTR|ERVL-MaLR	9827	NR_047564	23418	Hs.126135	NM_012076	ENSG00000134376	CRB1	LCA8|RP12	crumbs 1, cell polarity complex component	protein-coding	1.156	nan	1.362	0.412	1.444	0.708	0.381	0.199	0.153	1.415	0.847	0.276	0.892	0.088	0.130	0.428	0.431	0.348	0.513	1.715	1.678	0.190	0.098	0.362	0.406	1.812	nan	0.501	0.592	1.104	0.810	0.247	0.517	2.897	3.474	1.904	3.605	1.332	0.930	0.026	0.354	0.344	0.046	0.381	0.276	0.018	0.355	0.468	0.797
5710	chr3	178518396	178528398	+	0	NA	intron (NR_126561, intron 2 of 5)	MER5A1|DNA|hAT-Charlie	54796	NR_126560	104797538	Hs.478363	NR_126560		KCNMB2-AS1	-	KCNMB2 antisense RNA 1	ncRNA	2.136	2.076	2.018	0.493	2.807	1.432	0.257	0.135	0.065	3.046	2.024	0.730	0.931	0.022	0.060	0.437	0.252	0.351	0.458	0.906	1.055	3.328	1.176	0.302	0.295	0.768	1.187	1.664	2.984	1.080	0.672	0.087	0.224	4.480	4.768	0.491	0.976	3.128	1.520	0.050	0.239	1.651	0.429	0.257	0.730	0.263	1.552	0.069	0.138
4898	chr20	24962482	24976271	+	0	NA	intron (NM_020531, intron 1 of 8)	intron (NM_020531, intron 1 of 8)	4049	NM_020531	57136	Hs.472330	NM_020531	ENSG00000101474	APMAP	BSCv|C20orf3	adipocyte plasma membrane associated protein	protein-coding	1.677	2.350	nan	1.112	0.886	0.533	0.860	0.842	0.036	0.441	0.234	1.021	4.236	0.432	0.073	1.836	2.039	1.149	1.894	1.997	1.897	2.298	0.738	1.184	1.323	1.560	2.027	3.737	3.863	2.511	2.065	1.000	1.714	2.511	4.205	0.976	1.627	2.157	0.999	1.453	0.465	0.938	0.115	0.860	1.021	0.555	1.287	0.481	0.465
235	chr1	39718240	39752659	+	0	NA	intron (NM_012090, intron 5 of 92)	intron (NM_012090, intron 5 of 92)	-139727	NM_015038	643314	Hs.658760	NM_015038	ENSG00000127603	KIAA0754	-	KIAA0754	protein-coding	14.548	nan	1.488	3.783	0.587	0.317	0.439	0.849	0.154	1.236	0.640	1.275	1.217	0.336	0.145	0.327	0.342	0.323	0.450	2.380	2.413	nan	0.653	0.429	0.365	1.342	1.934	9.744	9.132	nan	0.968	0.491	0.594	0.634	0.696	1.032	3.291	2.396	nan	1.629	1.223	0.125	0.055	0.439	1.275	0.130	0.778	0.109	0.449
2291	chr13	45149092	45155159	+	0	NA	intron (NR_038381, intron 2 of 2)	CpG-6410	-1424	NM_183422	8848	Hs.436383	NM_006022	ENSG00000102804	TSC22D1	Ptg-2|TGFB1I4|TSC22	TSC22 domain family member 1	protein-coding	4.610	4.659	3.494	3.203	2.908	1.061	2.659	2.923	0.317	2.345	1.296	7.575	7.020	3.018	0.076	7.675	8.110	1.983	2.801	10.388	7.952	8.265	4.249	5.911	6.328	2.582	3.521	2.974	4.954	4.427	5.428	5.230	8.748	4.583	3.655	6.377	4.037	2.239	1.300	2.732	8.181	1.208	2.887	2.659	7.575	0.653	1.437	2.635	1.957
6106	chr4	185811016	185816112	+	0	NA	TTS (NR_039976)	TTS (NR_039976)	7051	NR_039975	100506229	Hs.378150	NR_039975		LINC01093	-	long intergenic non-protein coding RNA 1093	ncRNA	nan	0.606	nan	0.061	0.306	0.046	0.243	0.044	0.031	0.039	0.066	0.211	0.224		0.073	0.213	0.137	9.904	4.725	0.413	0.337	0.117	0.012	0.271	0.247	0.145	0.171	0.238	0.374	0.503	0.422	0.108	0.179	0.050	0.039	0.160	0.252	0.231	0.237	0.018	0.054		0.077	0.243	0.211	0.056	0.020	0.019	0.096
1931	chr12	49207928	49218479	+	0	NA	intron (NM_001206915, intron 1 of 11)	intron (NM_001206915, intron 1 of 11)	949	NM_001206915	784	Hs.250712	NM_000725	ENSG00000167535	CACNB3	CAB3|CACNLB3	calcium voltage-gated channel auxiliary subunit beta 3	protein-coding	2.648	nan	1.538	0.820	2.013	1.170	1.809	0.572	0.199	0.808	0.578	3.129	2.453	1.988	0.063	2.075	3.458	2.405	3.046	6.619	6.087	4.070	1.337	2.334	2.439	1.477	2.110	6.132	6.468	1.190	1.416	0.811	1.560	2.002	1.199	1.125	2.095	3.049	1.670	4.504	4.879	0.467	0.473	1.809	3.129	0.574	0.933	0.536	0.739
2591	chr14	52326277	52341648	+	0	NA	intron (NM_001243774, intron 1 of 2)	L2c|LINE|L2	6940	NM_001243773	54331	Hs.187772	NM_053064	ENSG00000186469	GNG2	-	G protein subunit gamma 2	protein-coding	nan	nan	0.926	0.205	1.505	0.814	3.517	0.425	0.105	1.356	0.987	1.189	2.520	0.064	0.116	0.291	0.189	0.261	0.516	1.449	1.698	3.829	1.640	0.523	0.589	1.438	2.004	0.224	0.301	1.246	0.915	0.286	0.386	4.918	5.512	0.490	1.488	nan	1.440	1.001	0.568	0.873	1.391	3.517	1.189	0.151	0.370	0.051	0.162
7733	chr8	67973203	67978381	+	0	NA	promoter-TSS (NM_024790)	promoter-TSS (NM_024790)	-811	NM_024790	79848	Hs.370147	NM_024790	ENSG00000104218	CSPP1	CSPP|JBTS21	centrosome and spindle pole associated protein 1	protein-coding	7.673	3.090	3.488	5.469	4.199	1.824	3.016	4.887	0.304	2.448	1.257	3.956	11.831	2.955	0.095	4.950	4.395	6.982	10.509	8.324	8.563	9.442	4.003	9.271	9.928	5.520	6.386	5.058	7.851	nan	6.188	5.147	8.304	9.474	10.705	4.700	4.952	5.043	2.691	2.689	5.509	2.057	2.120	3.016	3.956	0.623	4.564	2.717	1.891
8339	chr9	139580241	139593637	+	0	NA	Intergenic	CpG	-5028	NM_006412	10555	Hs.320151	NM_006412	ENSG00000169692	AGPAT2	1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2	protein-coding	nan	3.653	4.755	2.950	0.414	0.277	0.811	0.252	0.084	0.853	0.467	0.436	3.441	0.321	0.059	0.608	1.768	1.022	1.506	2.476	2.392	nan	0.670	0.569	0.632	0.328	0.613	5.644	5.936	3.377	3.902	0.439	0.620	1.722	1.232	0.394	0.597	2.147	1.021	4.506	0.646	0.368	0.377	0.811	0.436	0.623	0.788	0.185	0.101
1103	chr10	39104173	39114433	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	119576	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo	4.822	5.427	4.975	0.241	1.252	0.764	0.838	0.689	3.320	0.503	1.342	0.363	1.232	0.255	1.002	2.856	1.229	1.079	nan	2.341	3.602	0.738	0.579	1.103	1.043	1.929	2.650	1.520	1.304	3.212	0.770	0.880	1.434	1.120	2.044	1.077	1.860	0.983	1.545	0.093	0.380	0.353	0.210	0.838	0.363	0.039	0.148	0.107	0.204
6357	chr5	89418988	89430046	+	0	NA	Intergenic	Intergenic	-111980	NR_037433	100500825		NR_037433	ENSG00000264342	MIR3660	mir-3660	microRNA 3660	ncRNA	0.657	1.017	0.617	0.443	5.444	2.611	0.183	0.109	0.132	0.728	0.489		0.361	0.075	0.133	0.181	0.166	0.193	0.249	0.730	0.953	2.737	2.350	0.188	0.142	0.369	0.388	0.226	0.198	0.329	0.120	0.080	0.162	1.644	2.753	0.190	nan	1.812	0.890		0.138	0.240	0.043	0.183			0.064	0.072	0.045
4268	chr2	26560336	26570693	+	0	NA	intron (NM_153835, intron 1 of 11)	intron (NM_153835, intron 1 of 11)	3196	NM_001321975	165082	Hs.631878	NM_153835	ENSG00000173567	ADGRF3	GPR113|PGR23	adhesion G protein-coupled receptor F3	protein-coding	2.829	1.459	1.964	1.746	1.532	0.759	1.790	0.947	0.274	1.038	0.672	1.861	4.937	1.589	0.181	2.146	1.962	5.235	9.770	3.596	2.681	3.819	1.691	6.754	7.295	1.915	2.473	2.647	nan	3.224	3.752	1.370	2.542	0.900	1.309	3.077	3.198	1.677	1.063	1.331	1.977	0.137	1.186	1.790	1.861	0.740	0.812	0.735	0.869
265	chr1	43388125	43435448	+	0	NA	intron (NM_006516, intron 1 of 9)	intron (NM_006516, intron 1 of 9)	-12934	NR_033967	440584	Hs.260928	NR_033967	ENSG00000227533	SLC2A1-AS1	-	SLC2A1 antisense RNA 1	ncRNA	nan	1.506	nan	0.795	0.829	0.451	1.139	1.320	0.293	0.777	0.394	1.867	2.012	0.519	0.104	0.818	1.311	0.918	1.502	3.460	3.221	2.005	0.489	2.645	2.660	0.773	nan	nan	9.045	1.315	1.403	1.123	nan	0.486	0.628	0.835	1.555	1.230	0.715	1.704	0.890	0.058	0.452	1.139	1.867	0.270	0.730	0.634	0.497
296	chr1	49380983	49405745	+	0	NA	intron (NM_001323573, intron 5 of 12)	intron (NM_001323573, intron 5 of 12)	-150723	NM_001302082	79656	Hs.475348	NM_024603	ENSG00000162373	BEND5	C1orf165	BEN domain containing 5	protein-coding	nan	0.969	nan	0.265	0.315	0.231	0.356	0.081	0.136	0.186	0.192	0.149	0.464	0.077	0.084	0.477	0.360	0.292	0.372	0.609	0.717	0.295	0.100	0.239	0.331	1.141	nan	nan	0.509	0.639	0.566	0.132	nan	0.088	0.132	1.361	4.099	0.743	0.545	0.075	0.109	0.015	0.557	0.356	0.149	0.219	0.102	0.044	0.866
171	chr1	29209644	29256322	+	0	NA	intron (NM_001166007, intron 1 of 17)	intron (NM_001166007, intron 1 of 17)	-8105	NM_001166006	2035	Hs.175437	NM_004437	ENSG00000159023	EPB41	4.1R|EL1|HE	erythrocyte membrane protein band 4.1	protein-coding	1.641	1.243	nan	2.609	1.218	0.553	0.581	0.396	0.138	0.558	0.332	0.500	1.479	0.493	0.121	0.984	1.171	0.825	1.364	1.825	1.792	1.521	0.613	1.695	1.767	1.495	2.082	2.070	2.345	1.824	1.649	1.049	1.268	0.754	1.246	1.580	3.638	1.776	0.860	0.575	0.987	0.147	0.432	0.581	0.500	0.413	0.608	0.344	0.677
7696	chr8	61669501	61724337	+	0	NA	intron (NM_017780, intron 3 of 37)	intron (NM_017780, intron 3 of 37)	43101	NM_001316690	55636	Hs.20395	NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding	1.846	1.327	1.742	1.815	3.045	1.640	1.615	0.078	0.071	1.019	0.603	5.242	1.824	0.075	0.077	0.352	0.338	0.573	0.513	3.286	4.199	4.038	1.826	0.153	0.122	1.095	nan	2.535	2.555	nan	1.448	0.344	0.569	2.094	4.327	1.124	3.349	2.718	1.372	0.635	1.978	0.610	0.625	1.615	5.242	3.955	1.388	0.233	1.011
5435	chr3	97675783	97704806	+	0	NA	intron (NM_001261829, intron 1 of 9)	Charlie19a|DNA|hAT-Charlie	1001	NM_001261829	84864	Hs.570562	NM_032778	ENSG00000170854	RIOX2	JMJD10|MDIG|MINA|MINA53|NO52|ROX	ribosomal oxygenase 2	protein-coding	1.689	1.075	1.364	0.240	0.331	0.102	0.243	0.269	0.150	0.389	0.337	0.351	0.452	0.255	0.097	0.422	0.279	0.379	0.520	1.118	0.953	0.559	0.182	1.221	1.199	3.793	4.228	0.408	0.625	5.701	5.519	0.235	0.360	0.170	0.139	2.531	4.074	0.617	0.537	0.322	0.442	0.027	0.066	0.243	0.351	0.204	0.312	0.055	3.253
5449	chr3	107699634	107727811	+	0	NA	Intergenic	Intergenic	96213	NM_198793	961	Hs.446414	NM_001777	ENSG00000196776	CD47	IAP|MER6|OA3	CD47 molecule	protein-coding	nan	nan	0.754	0.115	0.431	0.195	0.166	1.051	0.149	0.106	0.117	0.268	0.410	0.027	0.100	0.508	0.456	2.622	4.311	0.281	0.393	1.185	0.436	0.424	0.470	0.365	0.634	0.192	0.253	0.601	0.255	0.118	0.184	0.820	0.807	0.315	0.558	0.917	0.658	0.087	0.069	0.297	0.082	0.166	0.268	0.127	0.032	0.035	0.149
4206	chr2	8630053	8693301	+	0	NA	Intergenic	Intergenic	62245	NR_110257	101929567	Hs.634706	NR_110257	ENSG00000236008	LINC01814	-	long intergenic non-protein coding RNA 1814	ncRNA	0.784	0.693	0.990	0.978	1.359	0.766	0.522	0.209	0.056	0.682	0.343	2.631	2.619	0.125	0.108	1.255	1.596	0.518	1.078	1.719	1.863	4.216	1.568	0.735	0.773	0.614	0.874	4.655	3.602	0.593	0.356	0.654	0.957	0.442	0.463	0.294	0.459	1.619	0.926	0.510	0.453	0.063	0.192	0.522	2.631	0.183	2.004	0.452	0.112
6838	chr6	66403985	66419872	+	0	NA	intron (NM_001142801, intron 1 of 11)	intron (NM_001142801, intron 1 of 11)	5190	NM_001142801	346007	Hs.25067	NM_198283	ENSG00000188107	EYS	C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1	eyes shut homolog (Drosophila)	protein-coding	nan	0.995	0.947	0.679	4.817	2.626	4.375	0.110	0.102	0.424	0.288	0.312	0.468	0.055	0.109	0.498	0.609	0.192	0.200	3.257	3.805	1.355	0.717	0.227	0.226	3.499	3.445	0.270	0.257	8.977	7.989	0.124	0.217	5.928	6.196	3.758	4.975	0.532	0.311	0.046	0.033	1.501	1.009	4.375	0.312	0.359	0.127	0.061	2.861
2687	chr14	77606058	77625965	+	0	NA	Intergenic	Intergenic	-7877	NM_174976	283576	Hs.525485	NM_174976	ENSG00000177108	ZDHHC22	C14orf59	zinc finger DHHC-type containing 22	protein-coding	2.998	1.232	0.925	0.807	0.795	0.411	1.721	0.146	0.167	0.426	0.267	0.800	1.699	0.295	0.114	0.527	0.523	0.140	0.208	2.172	2.185	2.240	0.549	0.346	0.374	1.249	1.793	2.969	nan	4.389	5.139	0.374	0.491	0.919	0.904	1.318	2.205	2.779	nan	2.419	0.288	0.172	0.396	1.721	0.800	0.562	1.139	0.101	0.559
6382	chr5	96267950	96273899	+	0	NA	promoter-TSS (NM_005575)	promoter-TSS (NM_005575)	-422	NM_005575	4012	Hs.527199	NM_005575	ENSG00000113441	LNPEP	CAP|IRAP|P-LAP|PLAP	leucyl and cystinyl aminopeptidase	protein-coding	nan	6.374	3.840	3.414	4.985	2.293	3.875	3.083	0.358	2.189	1.253	2.715	10.459	5.255	0.259	3.171	4.511	4.551	6.745	8.646	6.685	4.995	1.916	8.480	8.591	5.787	6.301	5.438	8.680	6.595	8.026	2.584	3.910	8.936	8.865	3.184	nan	3.058	1.468	5.775	6.316	2.361	2.333	3.875	2.715	1.256	3.322	2.560	1.448
2012	chr12	68713476	68771010	+	0	NA	Intergenic	Intergenic	-16082	NM_020128	56890	Hs.655702	NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding	0.925	1.645	0.942	0.541	4.213	2.100	5.293	0.354	0.120	0.411	0.347	1.559	2.704	0.106	0.091	0.691	0.634	0.821	0.837	4.936	nan	2.471	0.713	0.792	0.826	2.053	2.749	0.866	1.037	0.913	0.694	0.368	0.384	0.749	0.872	0.492	0.780	3.324	1.606	1.031	2.285	0.203	2.168	5.293	1.559	0.627	0.199	0.094	0.188
6745	chr6	37122760	37144238	+	0	NA	Intergenic	AluJo|SINE|Alu	-4423	NM_002648	5292	Hs.81170	NM_002648	ENSG00000137193	PIM1	PIM	Pim-1 proto-oncogene, serine/threonine kinase	protein-coding	nan	1.373	nan	2.213	1.085	0.547	2.095	1.472	0.316	0.729	0.338	2.475	4.930	3.525	0.176	1.633	1.809	1.234	nan	nan	2.837	3.717	1.823	1.333	1.468	1.156	1.678	2.694	5.164	2.716	2.854	1.192	1.502	1.208	1.853	1.500	2.408	1.240	0.810	1.863	1.859	0.262	1.478	2.095	2.475	0.440	0.554	0.579	0.495
5111	chr21	36584164	36613480	+	0	NA	Intergenic	Intergenic	-177227	NM_001754	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding	0.774	0.714	1.158	0.482	1.340	0.509	0.415	0.993	0.137	0.272	0.102	2.510	2.158	0.037	0.051	1.048	1.304	0.924	1.751	2.713	2.320	3.329	0.932	1.019	1.039	0.146	0.277	4.022	3.645	0.608	0.294	0.276	0.450	0.127	0.165	0.156	0.213	nan	0.981	2.321	2.938	0.026	0.062	0.415	2.510	0.016	0.139	0.128	0.047
8132	chr9	38224866	38235805	+	0	NA	Intergenic	Intergenic	-161125	NM_003028	6461	Hs.521482	NM_003028	ENSG00000107338	SHB	bA3J10.2	SH2 domain containing adaptor protein B	protein-coding	1.305	nan	3.666	1.188	1.345	0.699	2.120	0.643	0.074	0.346	0.263	1.414	3.034	0.109	0.057	0.322	0.529	0.610	1.456	2.505	2.044	6.435	1.548	0.464	0.588	0.246	0.500	3.199	2.991	1.158	1.053	0.435	0.578	1.367	1.624	0.896	3.067	2.773	1.553	2.191	1.031	0.260	0.160	2.120	1.414	0.071	0.317	0.126	1.531
582	chr1	155930529	155959483	+	0	NA	intron (NM_001162384, intron 1 of 21)	intron (NM_001162384, intron 1 of 21)	2960	NM_004723	9181	Hs.743352	NM_004723	ENSG00000116584	ARHGEF2	GEF|GEF-H1|GEFH1|LFP40|P40	Rho/Rac guanine nucleotide exchange factor 2	protein-coding	nan	nan	2.132	1.657	2.006	1.042	2.591	2.114	0.272	1.673	0.736	3.940	15.846	0.863	0.112	3.321	4.930	2.769	2.724	6.565	nan	2.055	0.805	3.003	3.223	1.789	2.674	2.852	2.797	2.385	2.160	4.435	5.876	1.575	1.837	1.941	5.599	1.603	0.759	2.031	1.233	0.736	0.950	2.591	3.940	0.594	1.455	2.886	1.307
1884	chr12	28020994	28024301	+	0	NA	Intergenic	Intergenic	89460	NM_020782	57542	Hs.505104	NM_020782	ENSG00000087448	KLHL42	Ctb9|KLHDC5	kelch like family member 42	protein-coding	2.499	nan	nan	0.106	0.182	0.193	0.193	0.714	0.145	0.190	0.252	0.072	0.437		0.047	0.199	0.148	0.259	0.952	0.316	0.342	0.166	0.073	0.352	0.439	1.685	1.877	0.123	0.229	1.160	0.894	0.119	0.206	0.417	0.355	0.761	2.274	0.329	0.470	0.050	0.135	0.146		0.193	0.072	5.247	0.062	0.030	0.566
5296	chr22	45897558	45901552	+	0	NA	intron (NM_006486, intron 1 of 16)	intron (NM_006486, intron 1 of 16)	836	NM_001996	2192	Hs.24601	NM_001996	ENSG00000077942	FBLN1	FBLN|FIBL1	fibulin 1	protein-coding	9.619	nan	4.183	0.439	1.883	1.512	8.437	4.057	0.385	0.356	0.165	1.948	3.910	4.531	0.112	0.649	1.236	3.192	5.194	2.480	1.908	2.608	1.044	6.652	6.054	0.665	nan	2.140	3.928	nan	3.077	1.909	2.075	0.989	1.285	0.811	0.853	0.438	0.482	2.945	0.112	0.216	0.606	8.437	1.948	3.892	0.056	0.544	0.349
5555	chr3	134192336	134207281	+	0	NA	intron (NM_001242375, intron 2 of 2)	intron (NM_001242375, intron 2 of 2)	-4767	NM_001042384	80254	Hs.443301	NM_025180	ENSG00000182923	CEP63	SCKL6	centrosomal protein 63	protein-coding	4.076	nan	nan	1.819	2.867	1.577	2.195	2.814	0.384	2.372	0.976	2.358	2.882	1.173	0.094	2.572	2.396	4.263	7.353	4.914	4.198	5.961	3.313	8.656	9.259	3.293	4.345	2.643	4.694	nan	4.487	1.718	2.598	1.467	1.573	3.190	3.068	2.064	1.200	1.649	1.960	0.221	1.503	2.195	2.358	0.684	1.211	1.252	1.074
7639	chr8	32955676	32989171	+	0	NA	Intergenic	L1MD|LINE|L1	358241	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding	0.584	0.778	nan	0.078	0.212	0.096	0.339	0.143	0.101	0.056	0.097	0.068	0.322	0.272	0.137	0.270	0.163	0.445	1.377	0.426	0.633	4.521	1.621	0.122	0.161	0.309	0.456	0.460	0.364	0.511	0.347	0.062	0.120	0.191	0.221	0.256	0.501	1.035	0.680	0.061	0.048	0.020	0.050	0.339	0.068	0.073	0.057	0.021	0.148
4868	chr20	18035932	18041097	+	0	NA	promoter-TSS (NM_021220)	promoter-TSS (NM_021220)	12	NM_021220	58495	Hs.661013	NM_021220	ENSG00000125850	OVOL2	EUROIMAGE566589|PPCD1|ZNF339	ovo like zinc finger 2	protein-coding	1.808	5.681	3.923	6.881	6.858	3.414	1.772	0.058	0.032	2.579	1.744	8.242	11.953	0.191	0.122	2.404	4.950	3.249	3.798	13.407	10.538	6.996	1.421	7.747	7.234	0.099	0.374	4.498	5.539	1.310	1.520	3.205	7.836	9.158	6.686	0.204	0.557	2.909	1.736	4.214	4.513	3.456	2.039	1.772	8.242	0.505	0.676	8.061	0.055
4167	chr2	738569	743204	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-63447	NM_152834	129787	Hs.43899	NM_152834	ENSG00000151353	TMEM18	-	transmembrane protein 18	protein-coding	2.079	0.737	0.778	0.362	0.999	0.590	3.707	0.048	0.139	0.338	0.392	0.749	21.755	0.533	0.136	1.151	1.538	1.938	2.999	4.802	4.400	0.800	0.312	0.904	1.002	1.336	1.848	3.773	5.154	1.319	1.718	2.087	5.342	0.107	0.065	0.751	1.105	1.193	0.722	0.823	14.447	0.021	0.360	3.707	0.749	0.313	0.815	6.111	0.509
7952	chr8	139141752	139159056	+	0	NA	intron (NM_015912, intron 18 of 19)	LTR16A|LTR|ERVL	358661	NM_015912	51059	Hs.126024	NM_015912	ENSG00000147724	FAM135B	C8ORFK32	family with sequence similarity 135 member B	protein-coding	nan	0.641	1.101	0.086	0.278	0.115	0.208	0.056	0.120	0.018	0.066	0.076	0.518	0.019	0.084	0.289	0.184	0.108	0.154	0.397	0.484	5.785	3.132	nan	0.181	0.152	0.213	0.203	0.214	0.333	0.169	0.165	0.207	0.540	0.849	0.369	0.637	0.410	0.471	0.032	0.133	0.094	0.055	0.208	0.076	0.017	0.064	0.108	0.227
557	chr1	154297065	154307721	+	0	NA	intron (NM_020452, intron 2 of 27)	intron (NM_020452, intron 2 of 27)	2117	NM_020452	57198	Hs.435700	NM_020452	ENSG00000143515	ATP8B2	ATPID	ATPase phospholipid transporting 8B2	protein-coding	nan	nan	1.267	0.798	1.028	0.395	2.418	1.534	0.135	0.553	0.472	2.477	6.244	1.525	0.101	1.297	2.274	1.684	2.684	4.318	nan	1.594	0.637	1.754	1.945	1.309	2.118	2.674	4.233	1.171	1.350	1.454	2.467	0.986	0.675	0.627	1.359	1.161	0.773	0.407	1.524	0.153	7.713	2.418	2.477	0.572	1.483	0.661	0.286
6372	chr5	93802061	93808420	+	0	NA	intron (NM_001145678, intron 10 of 20)	intron (NM_001145678, intron 10 of 20)	149069	NM_173665	285600	Hs.425123	NM_173665	ENSG00000185261	KIAA0825	C5orf36	KIAA0825	protein-coding	nan	6.737	0.694	0.777	0.872	0.403	0.330	0.633	0.141	0.149	0.117		0.347	0.034	0.173	0.274	0.194	0.251	0.381	0.760	0.789	2.499	0.557	0.145	0.159	1.012	1.000	4.018	5.062	2.498	1.968	0.385	0.536	0.481	0.428	0.319	nan	0.927	0.680	0.157	0.112	0.030	0.088	0.330		0.076	3.725	0.203	0.192
3325	chr17	20943530	20948458	+	0	NA	exon (NM_015276, exon 1 of 13)	exon (NM_015276, exon 1 of 13)	358	NM_015276	23326	Hs.462492	NM_015276	ENSG00000124422	USP22	USP3L	ubiquitin specific peptidase 22	protein-coding	nan	nan	nan	5.755	10.011	5.597	6.116	1.594	0.391	1.871	1.017	7.127	8.220	7.077	0.229	7.215	7.049	7.218	9.124	9.619	8.949	9.069	4.501	6.836	6.753	4.484	5.621	9.854	14.273	12.631	14.136	2.707	4.694	5.876	6.352	10.376	nan	2.278	1.055	4.146	3.988	1.218	2.527	6.116	7.127	1.751	6.248	1.392	3.949
5653	chr3	170347855	170363504	+	0	NA	intron (NR_135556, intron 2 of 5)	intron (NR_135556, intron 2 of 5)	-51816	NM_020949	57709	Hs.596660	NM_020949	ENSG00000013293	SLC7A14	PPP1R142	solute carrier family 7 member 14	protein-coding	1.126	1.140	0.898	0.212	0.378	0.185	0.810	0.305	0.123	0.291	0.233	0.138	0.537	0.048	0.073	0.318	0.297	0.181	0.232	0.787	0.807	0.365	0.179	0.219	0.208	1.355	1.834	1.098	0.985	0.742	0.382	0.294	0.414	0.340	0.465	0.244	0.395	0.927	0.692	4.519	2.148	0.122	0.136	0.810	0.138	0.112	0.052	0.209	0.095
983	chr10	179851	183007	+	0	NA	promoter-TSS (NM_001202464)	promoter-TSS (NM_001202464)	5	NM_001202464	10771	Hs.292265	NM_006624	ENSG00000015171	ZMYND11	BRAM1|BS69|MRD30	zinc finger MYND-type containing 11	protein-coding	6.672	4.445	6.174	5.709	6.423	3.650	4.864	5.616	0.869	3.473	0.898	13.302	11.465	4.993	0.141	10.957	10.827	8.139	13.036	12.319	10.125	16.071	8.522	12.694	12.350	4.362	6.706	6.583	12.676	5.441	6.686	5.381	10.372	4.565	3.280	5.292	2.064	1.444	0.953	2.097	6.838	0.962	4.761	4.864	13.302	0.806	3.060	2.415	1.570
8152	chr9	71733909	71752654	+	0	NA	intron (NM_001170414, intron 1 of 21)	L1MB8|LINE|L1	7101	NM_001170414	9414	Hs.50382	NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2	tight junction protein 2	protein-coding	nan	nan	nan	4.547	1.867	0.865	0.601	0.256	0.043	0.918	0.455	3.256	3.936	0.805	0.100	1.206	1.371	2.820	nan	3.555	nan	1.805	0.501	4.307	4.473	0.150	0.224	5.724	6.992	0.194	0.103	0.487	0.914	0.673	0.387	0.449	1.085	0.682	0.581	1.267	1.299	0.117	0.634	0.601	3.256	0.032	0.098	0.475	0.444
4482	chr2	121704992	121722826	+	0	NA	intron (NM_005270, intron 4 of 12)	L2a|LINE|L2	159042	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding	0.922	nan	nan	0.059	0.186	0.091	0.395	0.148	0.054	0.080	0.097	0.060	0.542	0.061	0.087	0.412	0.496	0.353	0.424	0.370	0.445	0.237	0.117	0.588	0.497	0.454	0.737	1.470	1.166	0.618	0.601	0.307	0.386	0.072	0.082	0.610	1.048	0.549	0.393	3.632	0.190	0.027	0.044	0.395	0.060	0.158	0.025	0.051	0.331
3496	chr17	61588800	61609717	+	0	NA	Intergenic	Intergenic	-1437	NM_001278920	81033	Hs.591177	NM_030779	ENSG00000173826	KCNH6	ERG-2|ERG2|HERG2|Kv11.2|hERG-2	potassium voltage-gated channel subfamily H member 6	protein-coding	1.438	nan	1.328	1.803	2.259	1.009	0.153	0.136	0.108	0.556	0.306	3.724	1.872	0.083	0.114	1.101	2.027	0.185	0.238	1.678	1.998	2.204	0.669	0.791	0.970	0.439	nan	4.755	5.601	2.036	1.718	0.726	0.787	0.877	0.550	1.241	3.924	1.340	0.936	1.049	1.874	0.163	4.125	0.153	3.724	0.649	0.384	0.945	0.784
5540	chr3	129308852	129327785	+	0	NA	intron (NM_015103, intron 1 of 35)	intron (NM_015103, intron 1 of 35)	7264	NM_015103	23129	Hs.301685	NM_015103	ENSG00000004399	PLXND1	PLEXD1	plexin D1	protein-coding	1.945	nan	1.335	1.609	1.032	0.438	1.555	2.023	0.442	0.696	0.757	1.760	1.944	1.281	0.085	0.467	0.516	0.631	0.865	1.890	1.794	2.268	0.681	0.603	0.560	0.792	nan	6.684	6.566	1.115	0.839	0.439	0.584	0.664	0.681	1.188	2.247	1.352	0.825	1.069	0.540	0.201	0.390	1.555	1.760	0.846	2.789	0.182	0.503
7132	chr7	2636206	2682704	+	0	NA	Intergenic	AluSz6|SINE|Alu	-12148	NM_025250	80727	Hs.440899	NM_025250	ENSG00000136295	TTYH3	-	tweety family member 3	protein-coding	2.430	1.917	5.381	0.407	0.691	0.359	0.651	1.080	0.177	0.513	0.278	0.999	nan	0.629	0.133	1.210	1.993	0.705	nan	1.785	1.641	nan	0.437	1.397	1.351	1.321	2.034	nan	1.612	0.404	0.307	0.615	0.783	0.566	0.555	0.744	1.169	1.066	0.602	1.918	0.813	0.092	0.494	0.651	0.999	0.367	1.141	0.306	0.233
7251	chr7	35838168	35843627	+	0	NA	promoter-TSS (NR_120511)	promoter-TSS (NR_120511)	301	NM_001011553	989	Hs.191346	NM_001788	ENSG00000122545	SEPT7	CDC10|CDC3|NBLA02942|SEPT7A	septin 7	protein-coding	8.422	4.902	6.668	4.535	4.860	3.438	4.540	4.964	0.726	2.881	1.668	8.034	11.072	6.823	0.229	8.216	8.692	6.818	8.293	11.463	nan	7.585	4.737	22.415	23.898	7.375	nan	nan	nan	8.204	9.824	5.165	8.095	6.896	6.175	8.442	nan	3.296	1.926	3.885	4.169	1.608	4.143	4.540	8.034	1.423	4.033	2.617	2.835
2167	chr12	118493376	118501958	+	0	NA	intron (NM_001278557, intron 1 of 8)	intron (NM_001278557, intron 1 of 8)	1349	NM_018639	55884	Hs.506985	NM_018639	ENSG00000176871	WSB2	SBA2	WD repeat and SOCS box containing 2	protein-coding	nan	nan	2.736	4.422	4.740	2.437	2.607	2.681	0.225	2.225	1.272	6.403	8.127	4.575	0.134	3.679	4.798	4.162	4.197	nan	nan	8.185	2.960	5.248	5.360	1.481	2.167	9.337	11.520	2.136	1.782	3.756	5.111	4.450	5.212	1.072	1.490	nan	1.659	3.715	4.380	1.771	0.472	2.607	6.403	0.496	2.835	1.719	0.524
1980	chr12	58738640	58753403	+	0	NA	Intergenic	Intergenic	-239463	NR_126341	100506869	Hs.290456	NR_126341	ENSG00000258231	LOC100506869	-	uncharacterized LOC100506869	ncRNA	nan	0.793	0.668	1.405	0.362	0.229	0.377	0.424	0.121	0.694	0.484	0.294	0.387	0.022	0.089	nan	0.301	0.279	0.310	0.303	nan	6.746	2.222	0.307	0.347	0.349	nan	0.648	nan	0.420	0.168	0.108	0.295	0.294	0.224	0.248	0.441	2.509	1.349	0.019	0.060	0.078	0.059	0.377	0.294	0.105	0.048	0.053	0.208
8216	chr9	97849871	97872493	+	0	NA	TTS (NM_000136)	TTS (NM_000136)	-12806	NR_036109	100422842		NR_036109	ENSG00000207617	MIR3074	mir-3074	microRNA 3074	ncRNA	1.065	nan	4.518	0.572	0.421	0.114	0.537	0.270	0.022	0.195	0.106	0.196	0.572	0.076	0.065	0.250	0.303	0.882	nan	0.897	0.931	0.270	0.141	0.223	0.181	0.375	0.577	1.013	1.349	1.000	1.094	0.266	0.501	0.432	0.635	0.315	0.436	0.682	0.523	0.468	0.311	0.110	0.154	0.537	0.196	0.219	0.230	0.131	0.192
4004	chr19	28777559	28817319	+	0	NA	Intergenic	AluSq2|SINE|Alu	-300156	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA	nan	0.633	0.770	0.064	0.430	0.197	0.129	0.069	0.114	0.032	0.079	1.282	6.184	0.060	0.089	0.293	0.328	0.617	1.150	0.175	0.216	0.139	0.081	0.102	0.095	0.163	0.301	0.110	0.150	0.297	0.086	0.324	0.561	0.059	0.085	0.133	0.188	1.541	1.079	0.084	0.076	0.015	0.020	0.129	1.282	0.182	0.491	0.384	0.164
4890	chr20	22460533	22517969	+	0	NA	Intergenic	L2c|LINE|L2	70029	NR_001558	140828	Hs.9842	NR_001558	ENSG00000259974	LINC00261	ALIEN|C20orf56|DEANR1|HCCDR1|NCRNA00261|onco-lncRNA-17	long intergenic non-protein coding RNA 261	ncRNA	0.789	1.178	nan	2.429	1.749	0.847	0.261	0.077	0.081	1.771	0.819	1.343	0.925	0.037	0.071	0.451	0.217	0.122	0.174	2.404	2.199	7.259	2.819	0.089	0.121	0.134	0.241	2.912	2.808	0.344	0.102	0.246	0.299	2.622	2.328	0.405	0.898	2.809	1.489	0.013	0.186	0.667	0.018	0.261	1.343	0.012	2.480	0.148	0.054
5024	chr20	58626218	58638711	+	0	NA	non-coding (NR_126504, exon 2 of 2)	non-coding (NR_126504, exon 2 of 2)	1484	NM_001302813	284756	Hs.335319	NM_173644		C20orf197	-	chromosome 20 open reading frame 197	protein-coding	1.848	1.441	0.643	0.351	3.411	1.565	0.594	0.167	0.090	0.063	0.093	2.870	0.446	0.058	0.079	1.680	nan	0.127	0.189	2.798	2.825	3.146	0.691	1.317	1.321	0.222	0.522	7.735	8.946	1.648	1.462	0.660	0.972	0.071	0.196	0.608	0.911	2.317	1.355	3.075	4.152		0.051	0.594	2.870	1.259	4.265	0.632	0.352
677	chr1	177944490	177954712	+	0	NA	Intergenic	Intergenic	-10551	NM_033127	89866	Hs.149540	NM_033127	ENSG00000120341	SEC16B	LZTR2|PGPR-p117|RGPR|SEC16S	SEC16 homolog B, endoplasmic reticulum export factor	protein-coding	nan	nan	nan	0.086	0.284	0.047	0.188	0.300	0.095	0.150	0.168	0.093	0.349	0.055	0.096	0.371	0.310	0.335	0.453	nan	0.479	0.532	0.179	0.205	0.254	4.513	5.674	0.299	0.297	0.763	0.686	0.417	0.498	0.649	0.494	0.287	nan	1.182	0.758	0.049	0.155	0.103	0.071	0.188	0.093	0.095	0.020	0.077	0.172
7622	chr8	26432829	26438541	+	0	NA	promoter-TSS (NM_001244604)	promoter-TSS (NM_001244604)	-236	NM_001244604	1808	Hs.593187	NM_001386	ENSG00000092964	DPYSL2	CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2	dihydropyrimidinase like 2	protein-coding	nan	4.420	nan	3.205	5.574	3.071	6.923	3.040	0.198	1.836	1.119	6.255	4.502	2.793	0.153	7.110	6.668	4.613	5.992	nan	12.698	9.712	5.125	2.827	2.780	2.852	3.354	4.938	10.147	8.477	10.794	2.614	5.671	5.554	5.047	7.313	6.255	nan	nan	5.256	4.367	1.719	2.014	6.923	6.255	0.758	4.232	1.661	3.071
1210	chr10	112025595	112038166	+	0	NA	intron (NM_005962, intron 3 of 5)	intron (NM_005962, intron 3 of 5)	32827	NM_005871	10285	Hs.632093	NM_005871	ENSG00000119953	SMNDC1	SMNR|SPF30|TDRD16C	survival motor neuron domain containing 1	protein-coding	1.351	nan	1.134	0.077	0.480	0.192	0.147	0.464	0.063	0.025	0.078	0.154	0.311	0.082	0.094	0.363	0.329	0.614	1.085	0.150	0.181	0.465	0.162	0.184	0.127	3.886	4.199	0.437	0.501	2.013	1.307	0.182	0.221	0.759	0.583	0.753	2.172	0.311	0.294	0.331	0.314	0.243	0.138	0.147	0.154	0.694	0.073	0.100	0.680
590	chr1	156348273	156416241	+	0	NA	intron (NM_006365, intron 4 of 6)	intron (NM_006365, intron 4 of 6)	7964	NR_029691	407046		NR_029691	ENSG00000207933	MIR9-1	MIRN9-1|hsa-mir-9-1|miRNA9-1|mir-9-1	microRNA 9-1	ncRNA	nan	nan	0.819	0.171	0.335	0.166	0.299	0.113	0.136	0.253	0.184	0.137	1.474	0.130	0.107	6.470	8.578	1.638	1.338	0.709	nan	1.022	0.321	1.730	1.818	0.688	1.108	1.065	1.527	0.565	0.318	6.788	11.027	0.163	0.274	0.368	0.839	0.666	0.533	0.046	0.267	0.027	0.044	0.299	0.137	0.296	0.271	5.780	0.062
5062	chr21	16372109	16379674	+	0	NA	intron (NM_003489, intron 3 of 3)	intron (NM_003489, intron 3 of 3)	61235	NM_003489	8204	Hs.155017	NM_003489	ENSG00000180530	NRIP1	RIP140	nuclear receptor interacting protein 1	protein-coding	1.487	1.077	nan	0.476	3.585	2.048	0.646	0.019	0.021	1.941	1.051	0.016	0.346	0.073	0.076	0.936	1.048	0.780	0.906	0.747	0.929	5.607	2.052	0.111	0.137	0.147	0.204	0.346	0.386	3.224	2.882	0.744	1.240	6.187	7.553	0.964	2.626	4.076	1.686	0.014	0.023	1.332	0.649	0.646	0.016			0.955	0.776
7793	chr8	94503919	94510433	+	0	NA	intron (NR_033858, intron 7 of 10)	(CA)n|Simple_repeat|Simple_repeat	205485	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	ncRNA	nan	2.225	8.261	3.850	2.140	1.220	0.179	0.324	0.076	0.241	0.195	0.258	1.038	0.224	0.115	0.233	0.066	0.165	nan	0.395	0.498	0.145	0.074	0.152	0.184	0.472	0.766	1.447	1.833	1.664	1.281	0.098	0.206	7.342	7.680	0.227	0.378	0.738	0.543	2.417	0.121	2.015	0.099	0.179	0.258		3.338	0.031	0.076
4201	chr2	7191465	7199085	+	0	NA	Intergenic	L2c|LINE|L2	22736	NR_110252	101929452		NR_110252	ENSG00000223884	LOC101929452	-	uncharacterized LOC101929452	ncRNA	0.773	0.883	0.857	0.699	0.462	0.212	0.236	0.113	0.064	0.434	0.230	2.340	1.029	0.071	0.088	0.794	1.316	0.272	0.157	2.439	2.224	2.720	0.698	0.182	0.244	0.420	0.574	2.247	2.532	0.707	0.538	0.293	0.556	0.149	0.114	0.300	0.408	3.623	1.560	0.636	6.897	0.025	0.210	0.236	2.340	0.555	0.190	0.182	0.129
5832	chr4	7956490	7989380	+	0	NA	intron (NM_001130083, intron 20 of 20)	intron (NM_001130083, intron 20 of 20)	-31282	NM_001134647	60312	Hs.529369	NM_021638	ENSG00000196526	AFAP1	AFAP|AFAP-110|AFAP110	actin filament associated protein 1	protein-coding	1.066	0.925	nan	0.572	0.226	0.092	0.392	0.432	0.191	0.231	0.186	0.444	1.053	0.046	0.064	1.341	1.711	4.051	8.247	0.454	0.658	nan	0.385	0.668	0.730	0.373	0.608	1.010	1.129	0.702	0.501	0.764	1.020	0.487	0.541	0.158	0.200	nan	0.567	0.200	0.604	0.154	0.369	0.392	0.444	0.168	0.081	0.268	0.045
4363	chr2	55274694	55282839	+	0	NA	promoter-TSS (NM_001321859)	promoter-TSS (NM_001321859)	-813	NM_001321859	57142	Hs.637850	NM_007008	ENSG00000115310	RTN4	ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C	reticulon 4	protein-coding	4.729	nan	3.875	3.458	4.367	2.715	3.878	4.632	0.437	2.341	1.337	4.037	9.651	3.980	0.160	3.716	4.820	3.564	5.550	6.813	5.495	4.457	1.332	11.275	11.282	3.335	4.107	5.153	6.755	6.721	7.768	2.631	5.090	3.246	4.282	4.455	6.005	1.568	1.050	3.735	6.075	0.908	2.626	3.878	4.037	1.395	3.431	2.131	2.556
79	chr1	10679386	10877944	+	0	NA	intron (NM_017766, intron 2 of 15)	intron (NM_017766, intron 2 of 15)	78068	NM_001079843	54897	Hs.439894	NM_017766	ENSG00000130940	CASZ1	CAS11|CST|SRG|ZNF693|dJ734G22.1	castor zinc finger 1	protein-coding	1.429	1.263	nan	4.287	1.377	0.734	1.261	0.114	0.096	0.515	0.283	1.087	1.944	0.132	0.090	1.110	1.495	1.202	1.652	2.348	2.648	0.298	0.161	1.304	nan	0.423	nan	6.387	7.921	nan	1.193	1.140	1.650	0.444	0.470	1.273	3.090	1.346	0.775	1.796	1.080	0.139	0.378	1.261	1.087	0.583	0.972	1.172	1.657
6342	chr5	79248030	79259513	+	0	NA	intron (NR_131226, intron 2 of 2)	(TGAA)n|Simple_repeat|Simple_repeat	21369	NR_131226	105616916	Hs.590325	NR_131226	ENSG00000250888	LINC01455	MDONA|TCONS_00009433	long intergenic non-protein coding RNA 1455	ncRNA	1.991	nan	1.161	0.068	0.306	0.095	0.111	0.103	0.079	0.013	0.085	0.062	0.236	0.057	0.100	0.200	0.084	0.291	0.349	0.220	0.252	nan	0.099	0.113	0.145	0.448	nan	0.238	0.225	5.929	6.637	0.088	0.173	0.062	0.118	1.540	4.335	0.380	0.412	0.072	0.069	0.017	0.091	0.111	0.062	1.018	0.061	0.046	3.147
3845	chr18	56525744	56538901	+	0	NA	intron (NM_001318728, intron 1 of 10)	intron (NM_001318728, intron 1 of 10)	999	NM_001318728	55205	Hs.529023	NM_018181	ENSG00000074657	ZNF532	-	zinc finger protein 532	protein-coding	nan	2.982	3.664	3.038	3.778	2.143	8.472	0.823	0.147	1.503	0.691	9.151	6.426	1.386	0.063	3.977	5.091	3.639	4.216	13.954	12.708	6.808	3.225	9.269	9.964	2.081	2.503	6.696	8.731	3.319	3.531	2.744	4.331	5.450	4.757	4.419	5.193	nan	3.111	3.903	3.368	1.849	2.718	8.472	9.151	0.548	1.774	1.352	2.087
3295	chr17	16384827	16396439	+	0	NA	intron (NM_207387, intron 1 of 2)	intron (NM_207387, intron 1 of 2)	4872	NM_001113567	388341	Hs.25425	NM_207387	ENSG00000181350	LRRC75A	C17orf76|FAM211A	leucine rich repeat containing 75A	protein-coding	1.279	1.463	1.624	2.278	1.808	0.925	2.201	0.347	0.041	1.340	0.828	5.115	5.711	0.185	0.043	1.768	3.496	1.375	nan	6.931	5.713	3.110	0.879	1.009	1.165	1.193	1.576	7.151	7.329	nan	0.840	0.663	1.389	0.933	1.054	0.479	0.563	2.068	0.926	4.160	2.931	0.205	0.156	2.201	5.115	1.021	12.116	0.490	0.296
352	chr1	66861117	66880103	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	50549	NM_001297442	5142	Hs.198072	NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding	1.486	0.952	nan	0.097	0.369	0.152	0.108	0.257	0.127	0.090	0.091	0.089	0.470	0.017	0.122	0.389	0.412	0.261	0.370	0.362	0.433	0.136	0.092	0.222	0.215	nan	nan	0.304	nan	0.957	1.495	0.167	0.266	0.043	0.056	1.223	5.050	0.872	0.754	0.079	0.206	0.036	0.075	0.108	0.089	0.090	0.096	0.058	1.838
6606	chr6	9130940	9142958	+	0	NA	Intergenic	Intergenic	484507	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA	1.355	1.814	1.710	0.599	1.255	0.749	0.845	0.188	0.080	0.662	0.457	2.102	1.438	0.090	0.104	0.426	0.357	0.185	0.320	1.743	1.531	2.983	0.839	0.216	0.205	0.151	0.252	0.217	0.210	0.420	0.204	0.087	0.151	4.679	6.753	0.210	0.375	1.238	0.676	1.089	0.999	1.039	0.205	0.845	2.102	0.309	0.753	0.025	0.091
3865	chr18	60796810	60830902	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	172757	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding	0.830	0.797	1.813	2.213	1.703	0.796	0.431	0.227	0.071	0.606	0.260	1.593	5.463	0.045	0.066	2.158	2.517	2.415	2.209	2.155	1.994	2.810	0.823	9.049	nan	0.209	nan	5.022	4.505	0.469	0.293	2.574	3.780	1.136	1.849	0.141	0.183	5.175	2.814	1.873	2.426	0.322	0.572	0.431	1.593	0.302	1.570	3.699	0.051
1034	chr10	14031834	14037243	+	0	NA	intron (NM_018027, intron 2 of 24)	intron (NM_018027, intron 2 of 24)	15994	NM_001318336	55691	Hs.330463	NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding	nan	1.855	0.507	0.216	0.201	0.156	0.360	6.248	0.768	0.261	0.092	0.155	2.332	0.059	0.081	2.927	3.359	8.130	7.132	0.442	0.441	1.706	0.603	0.315	0.186	0.588	0.899	0.529	0.470	0.144	0.122	0.193	0.205	0.281	0.325	0.181	0.340	0.751	0.482	0.041	0.049	0.107	0.058	0.360	0.155	0.036		0.073	0.185
2803	chr14	106023140	106050090	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	38423	NR_135205	105370697	Hs.148580	NR_135205		LOC105370697	-	uncharacterized LOC105370697	ncRNA	2.104	0.977	1.637	0.088	0.246	0.137	0.749	0.092	0.078	0.069	0.104	0.107	0.377	0.073	0.088	0.671	0.848	0.146	0.237	0.393	0.428	0.649	0.203	0.169	0.162	0.376	0.609	0.199	0.246	1.071	1.180	0.816	0.998	0.781	0.960	0.095	0.169	0.147	0.129	6.619	0.069	0.463	0.050	0.749	0.107	1.603	0.105	0.348	0.023
3679	chr18	19758628	19774735	+	0	NA	intron (NM_005257, intron 6 of 6)	intron (NM_005257, intron 6 of 6)	17283	NM_005257	2627	Hs.514746	NM_005257	ENSG00000141448	GATA6	-	GATA binding protein 6	protein-coding	0.699	0.869	1.449	0.376	0.450	0.209	0.160	0.117	0.040	0.552	0.212	0.052	0.329	0.051	0.079	0.330	0.236	1.218	2.068	0.368	0.472	4.500	1.836	0.257	0.299	0.130	0.122	0.112	0.118	0.481	0.265	0.236	0.431	0.291	0.233	0.300	0.645	0.437	0.555	0.017	0.121	0.022	0.024	0.160	0.052	0.024	0.025	0.092	0.163
6991	chr6	136832654	136852080	+	0	NA	intron (NM_001198616, intron 1 of 16)	MER102b|DNA|hAT-Charlie	4984	NM_001198611	9053	Hs.486548	NM_003980	ENSG00000135525	MAP7	E-MAP-115|EMAP115	microtubule associated protein 7	protein-coding	1.049	1.502	1.336	0.508	1.161	0.554	0.702	0.050	0.150	0.452	0.221	0.626	1.062	0.072	0.096	0.849	0.937	0.298	0.383	0.986	0.777	nan	1.682	0.411	0.489	0.272	0.430	0.692	0.952	0.674	0.418	0.417	1.159	3.214	5.303	0.238	nan	1.467	0.832	0.198	0.148	0.921	0.242	0.702	0.626	0.060	0.645	0.581	0.120
3145	chr16	53955521	53973339	+	0	NA	intron (NM_001080432, intron 7 of 8)	AluY|SINE|Alu	-108875	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1	ncRNA	nan	nan	nan	0.279	0.493	0.208	0.395	0.135	0.127	0.053	0.078	0.609	1.385	0.031	0.062	0.301	0.130	0.127	0.199	0.988	1.182	0.469	0.200	0.290	0.290	0.738	nan	nan	nan	nan	0.348	0.115	0.143	0.550	0.983	0.181	nan	nan	0.706	3.676	0.303	0.203	0.118	0.395	0.609	0.196	0.451	0.034	0.089
8103	chr9	32336052	32351155	+	0	NA	Intergenic	Intergenic	-40998	NM_001278352	48	Hs.567229	NM_002197	ENSG00000122729	ACO1	ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1	aconitase 1	protein-coding	0.641	nan	0.790	0.122	0.333	0.085	0.262	0.073	0.053	0.070	0.197	0.099	0.467	0.021	0.103	2.666	2.562	2.520	0.798	0.329	0.490	1.201	0.288	9.701	9.883	0.865	1.234	0.156	0.162	0.325	0.189	6.228	8.040	0.150	0.244	0.216	0.501	0.798	1.040	0.019	0.074	0.019	0.161	0.262	0.099		0.027	3.207	0.091
947	chr1	241751648	241776859	+	0	NA	intron (NM_014322, intron 2 of 3)	L2c|LINE|L2	34979	NM_001821	1122	Hs.654545	NM_001821	ENSG00000203668	CHML	REP2	CHM like, Rab escort protein 2	protein-coding	nan	1.253	nan	0.205	0.452	0.179	0.419	0.163	0.147	0.273	0.214	0.176	0.365	0.083	0.120	0.428	0.285	1.443	6.338	0.453	0.595	1.426	0.271	0.255	0.265	0.221	0.421	0.273	0.262	0.427	0.183	0.132	0.148	0.113	0.126	0.292	0.532	0.649	0.602	0.035	0.049	0.015	0.066	0.419	0.176	0.019	0.068	0.063	0.060
5071	chr21	22448381	22487556	+	0	NA	intron (NM_004540, intron 1 of 17)	intron (NM_004540, intron 1 of 17)	97335	NM_004540	4685	Hs.473450	NM_004540	ENSG00000154654	NCAM2	NCAM21	neural cell adhesion molecule 2	protein-coding	0.679	0.713	0.718	0.074	0.182	0.094	0.130	0.065	0.068	0.085	0.073	0.064	0.377	0.032	0.085	0.407	0.311	0.236	0.354	0.291	0.367	0.259	0.117	0.125	0.107	3.315	3.477	0.218	0.296	0.781	0.322	0.091	0.148	2.342	2.943	0.267	nan	0.329	0.325	0.132	0.045	0.708	0.014	0.130	0.064	0.015	0.022	0.020	0.133
920	chr1	232453808	232472678	+	0	NA	Intergenic	Intergenic	188111	NM_020808	57568	Hs.745009	NM_020808	ENSG00000116991	SIPA1L2	SPAL2	signal induced proliferation associated 1 like 2	protein-coding	1.133	2.675	1.210	1.219	0.548	0.331	0.430	0.132	0.122	0.199	0.188	0.368	2.375	0.046	0.077	0.391	0.262	0.918	3.539	0.980	0.853	nan	0.432	0.140	0.148	1.034	1.393	nan	1.118	0.552	0.350	0.172	0.291	0.274	0.204	0.397	0.907	nan	0.681	4.395	0.312	0.080	0.257	0.430	0.368	0.379	0.403	0.162	0.248
428	chr1	102934663	102945056	+	0	NA	Intergenic	L2a|LINE|L2	-477069	NR_110211	118427	Hs.484475	NM_058170	ENSG00000118733	OLFM3	NOE3|NOELIN3|OPTIMEDIN	olfactomedin 3	protein-coding	0.641	nan	nan	0.050	0.193	0.077	0.050	0.109	0.103	0.030	0.048	0.023	0.245	0.053	0.087	0.295	0.150	0.177	0.208	0.273	nan	0.114	0.075	0.204	0.196	4.664	4.427	nan	nan	0.526	0.206	0.076	0.224	0.033	0.054	0.179	nan	0.341	0.449	0.027	0.060	0.009	0.110	0.050	0.023		0.019	0.038	0.023
2305	chr13	51482874	51492203	+	0	NA	intron (NM_001142279, intron 1 of 9)	intron (NM_001142279, intron 1 of 9)	-2690	NR_046552	100874255	Hs.741501	NR_046552		RNASEH2B-AS1	-	RNASEH2B antisense RNA 1	ncRNA	3.097	nan	nan	1.722	1.430	0.601	0.991	1.451	0.085	1.044	0.768	3.673	5.037	1.026	0.072	5.227	4.586	1.419	2.123	4.336	4.164	nan	2.402	4.145	4.265	6.378	6.434	2.855	4.491	3.967	4.252	3.400	5.170	3.499	4.117	3.500	nan	0.858	0.532	1.468	2.241	0.975	1.826	0.991	3.673	0.927	0.620	1.535	1.115
3545	chr17	72666178	72682698	+	0	NA	intron (NM_175738, intron 1 of 8)	intron (NM_175738, intron 1 of 8)	7182	NM_175738	326624	Hs.351413	NM_175738	ENSG00000172794	RAB37	-	RAB37, member RAS oncogene family	protein-coding	1.691	0.877	0.857	0.041	0.396	0.161	0.221	0.091	0.137	0.086	0.075	0.073	1.160	0.052	0.104	3.997	7.173	0.096	0.100	0.931	0.805	0.208	0.093	0.068	0.078	nan	3.140	2.016	2.006	10.498	10.331	1.157	1.455	0.083	0.102	1.588	5.290	nan	0.428	0.383	0.534	0.023	0.044	0.221	0.073	0.810	0.172	1.680	1.558
3758	chr18	40469705	40477719	+	0	NA	intron (NM_002930, intron 4 of 4)	intron (NM_002930, intron 4 of 4)	221945	NM_001272077	6014	Hs.464985	NM_002930	ENSG00000152214	RIT2	RIBA|RIN|ROC2	Ras like without CAAX 2	protein-coding	nan	0.922	0.894	1.129	0.402	0.393	0.443	0.028	0.100	0.508	0.315	0.179	0.410	0.041	0.077	0.345	0.241	0.210	0.230	0.725	0.836	11.067	5.499	0.088	0.055	0.522	0.607	4.134	2.456	0.383	0.134	0.064	0.107	1.291	1.394	0.376	nan	1.852	1.453	0.014	0.090	0.238	0.099	0.443	0.179	0.048	4.465	0.012	0.024
7576	chr8	3429749	3445288	+	0	NA	intron (NM_033225, intron 9 of 69)	AluSx1|SINE|Alu	-851527	NR_125425	101927815	Hs.571467	NR_125423	ENSG00000254319	LOC101927815	-	uncharacterized LOC101927815	ncRNA	0.508	0.623	0.533	0.034	0.394	0.103	0.112	0.048	0.093	0.533	0.276	0.054	0.089	0.035	0.110	0.376	0.359	0.264	0.348	0.531	0.600	5.983	2.283	0.147	0.208	0.086	0.159	0.328	0.357	nan	0.203	0.095	0.108	1.622	1.656	0.108	0.160	1.088	0.854	0.087	0.045	0.188	0.015	0.112	0.054		0.039	0.019	0.008
500	chr1	145573749	145577849	+	0	NA	promoter-TSS (NM_006099)	promoter-TSS (NM_006099)	-189	NM_006099	10401	Hs.435761	NM_006099	ENSG00000131788	PIAS3	ZMIZ5	protein inhibitor of activated STAT 3	protein-coding	3.620	nan	3.091	2.483	1.592	0.821	2.565	2.116	0.078	1.940	0.806	3.261	18.862	3.177	0.149	1.244	1.769	2.943	3.546	5.618	4.589	4.454	1.130	1.618	2.119	2.193	3.103	3.911	4.976	1.629	1.848	1.544	2.861	2.820	2.117	2.449	4.376	2.172	1.067	1.286	4.948	0.763	1.838	2.565	3.261	0.423	2.322	0.872	1.173
5336	chr3	18455902	18472899	+	0	NA	intron (NM_001322874, intron 1 of 10)	intron (NM_001322874, intron 1 of 10)	2429	NM_002971	6304	Hs.517717	NM_002971	ENSG00000182568	SATB1	-	SATB homeobox 1	protein-coding	nan	1.318	2.029	0.883	1.520	0.604	0.399	0.189	0.047	1.034	0.525	1.180	2.879	0.058	0.061	2.534	2.567	1.001	1.235	3.129	2.611	1.747	0.544	1.558	1.651	0.104	0.168	1.466	1.562	1.197	1.362	3.103	5.400	1.600	1.554	0.652	1.130	1.424	0.795	0.036	1.074	0.499	2.716	0.399	1.180	0.399	1.071	3.115	0.524
4386	chr2	65084274	65093146	+	0	NA	intron (NR_110224, intron 1 of 4)	L2a|LINE|L2	2055	NR_110224	101927438	Hs.580313	NR_110224	ENSG00000234572	LINC01800	-	long intergenic non-protein coding RNA 1800	ncRNA	2.454	1.494	nan	1.896	1.510	0.552	1.033	1.906	0.234	1.204	0.399	1.000	5.565	2.741	0.151	0.526	0.847	0.575	1.084	1.951	1.637	nan	0.719	1.654	1.984	0.608	0.847	6.352	7.344	1.591	1.580	0.984	1.318	0.930	0.650	0.723	1.430	2.212	1.418	2.350	6.327	0.075	0.766	1.033	1.000	0.970	2.638	0.323	0.531
1275	chr11	1121214	1126965	+	0	NA	Intergenic	Intergenic	-27491	NM_001304359	4586	Hs.534332	NM_017511	ENSG00000215182	MUC5AC	MUC5|TBM|leB|mucin	mucin 5AC, oligomeric mucus/gel-forming	protein-coding	0.459	0.615	0.485	1.123	1.178	0.665	0.134	0.052		0.110	0.087	7.432	0.524	0.019	0.041	0.529	0.218	0.176	0.214	4.471	3.280	1.540	0.351	0.241	0.375	0.157	0.185	0.129	0.224	0.288	0.111	0.482	0.521	1.507	0.806	0.088	0.040	0.773	0.642	1.448	0.370	0.151		0.134	7.432	0.151	0.089	0.137	
2211	chr12	131114064	131153971	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-131607	NM_015347	23504	Hs.657441	NM_015347	ENSG00000060709	RIMBP2	PPP1R133|RBP2|RIM-BP2	RIMS binding protein 2	protein-coding	0.974	1.249	0.568	0.520	1.236	0.667	0.753	0.070	0.080	0.589	0.307	2.138	1.548	0.046	0.114	1.415	1.841	0.122	0.160	4.169	3.884	2.603	1.060	3.438	3.483	0.126	0.216	nan	4.731	1.104	0.960	1.845	2.701	0.155	0.148	0.358	0.677	1.672	1.090	2.280	2.455	0.007	0.952	0.753	2.138	0.674	0.471	2.681	0.031
6326	chr5	72914440	72940755	+	0	NA	intron (NM_001177693, intron 1 of 35)	intron (NM_001177693, intron 1 of 35)	5614	NM_001080479	64283	Hs.482521	NM_001080479	ENSG00000214944	ARHGEF28	RGNEF|RIP2|p190RHOGEF	Rho guanine nucleotide exchange factor 28	protein-coding	1.207	nan	1.111	0.327	0.898	0.437	0.322	0.489	0.129	0.274	0.113	0.469	1.053	0.554	0.144	0.239	0.157	0.937	1.225	0.677	0.711	nan	0.531	0.271	0.381	1.690	nan	0.714	0.771	3.455	3.504	0.265	0.421	1.218	1.687	0.901	2.021	0.998	0.648	0.047	0.545	0.289	0.329	0.322	0.469	0.136	0.248	0.082	0.435
4941	chr20	35847851	35905684	+	0	NA	Intergenic	L2a|LINE|L2	8544	NM_001184731	2691	Hs.37023	NM_021081	ENSG00000118702	GHRH	GHRF|GRF|INN	growth hormone releasing hormone	protein-coding	1.146	1.852	1.080	1.647	3.689	1.886	2.585	0.225	0.153	0.226	0.159	0.765	2.565	0.111	0.103	0.828	1.194	0.296	0.434	3.169	nan	4.632	1.119	0.658	0.629	0.514	0.823	0.461	0.560	0.789	0.542	0.435	0.505	0.755	0.551	0.491	nan	0.746	0.469	1.071	0.767	0.222	1.395	2.585	0.765	0.313	0.244	0.073	0.226
1362	chr11	31042916	31065413	+	0	NA	Intergenic	Intergenic	-39931	NM_020869	100506627	Hs.530438	NM_020869	ENSG00000170959	DCDC5	-	doublecortin domain containing 5	protein-coding	0.683	1.000	nan	0.220	0.252	0.243	0.643	0.051	0.043	0.459	0.274	0.048	0.386	0.058	0.125	0.520	0.300	0.173	0.242	0.240	0.290	2.070	0.585	0.217	0.239	1.398	1.577	0.104	0.152	0.337	0.192	0.176	0.315	4.638	6.001	0.141	nan	1.229	0.707	0.055	0.511	1.621	0.092	0.643	0.048	0.026	0.030	0.075	0.039
4155	chr19	56158516	56170395	+	0	NA	promoter-TSS (NM_007279)	promoter-TSS (NM_007279)	-961	NM_007279	11338	Hs.528007	NM_007279	ENSG00000063244	U2AF2	U2AF65	U2 small nuclear RNA auxiliary factor 2	protein-coding	4.477	2.702	4.183	3.452	6.261	3.728	2.940	1.873	0.231	2.190	1.294	3.869	5.196	4.499	0.161	7.162	7.770	4.258	6.412	8.458	9.182	6.157	5.358	6.480	6.972	4.977	6.039	5.631	8.828	9.642	8.583	5.953	9.196	5.058	6.314	6.702	6.164	3.707	1.821	4.055	5.086	1.483	2.635	2.940	3.869	1.668	2.459	3.219	2.869
2484	chr14	23234924	23236868	+	0	NA	exon (NM_005015, exon 1 of 10)	exon (NM_005015, exon 1 of 10)	165	NM_005015	5018	Hs.151134	NM_005015	ENSG00000155463	OXA1L	OXA1	OXA1L, mitochondrial inner membrane protein	protein-coding	7.282	4.076	5.408	6.806	4.198	3.200	4.020	5.293	0.582	1.660	1.150	4.396	9.934	5.583	0.066	4.124	3.947	7.853	12.145	6.968	6.270	11.663	5.834	16.846	17.993	9.614	11.354	6.210	nan	24.048	25.466	8.621	9.194	6.543	8.905	7.069	6.440	5.610	2.909	6.374	4.078	0.476	2.586	4.020	4.396	11.191	4.038	2.327	3.507
8159	chr9	75561940	75572440	+	0	NA	intron (NM_000689, intron 1 of 12)	intron (NM_000689, intron 1 of 12)	1043	NM_000689	216	Hs.76392	NM_000689	ENSG00000165092	ALDH1A1	ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1	aldehyde dehydrogenase 1 family member A1	protein-coding	nan	nan	nan	0.092	1.794	1.195	0.159	0.201	0.061	1.895	0.675	0.120	0.222	2.065	0.102	2.199	2.893	1.613	nan	0.593	nan	4.909	1.730	0.818	0.762	0.120	0.147	1.272	1.231	0.228	0.097	0.935	1.133	6.253	5.391	0.190	0.237	4.117	1.953	0.032	0.170	1.247	0.030	0.159	0.120		0.038	0.480	0.059
2659	chr14	68399302	68417219	+	0	NA	intron (NM_001321809, intron 7 of 11)	intron (NM_001321809, intron 7 of 11)	117951	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding	nan	nan	0.904	0.200	0.376	0.143	0.395	3.080	0.153	0.062	0.101	0.221	0.903	4.408	0.173	0.256	0.224	0.525	2.237	0.400	0.525	0.310	0.146	nan	0.532	0.437	0.745	0.498	nan	0.631	0.359	0.280	0.413	0.429	0.347	0.207	0.606	1.765	1.024	0.698	0.183	0.095	0.125	0.395	0.221	0.011	0.078	0.132	0.084
8044	chr9	11192521	11202819	+	0	NA	Intergenic	LTR12C|LTR|ERV1	584464	NR_110696	101929428	Hs.434446	NR_110696	ENSG00000226717	PTPRD-AS2	-	PTPRD antisense RNA 2 (head to head)	ncRNA	nan	nan	0.644	0.111	0.938	0.568	0.414	0.084	0.062	0.629	0.396	0.199	0.366	0.031	0.072	0.236	0.099	0.295	0.272	0.173	0.247	0.439	0.192	0.113	0.085	4.613	4.830	0.285	0.226	1.097	0.776	0.046	0.128	0.768	0.446	0.164	0.229	3.169	1.776	0.011	0.027	0.140	0.046	0.414	0.199	0.459	0.049	0.085	0.024
7017	chr6	143856719	143878464	+	0	NA	Intergenic	Intergenic	15597	NR_110148	285740	Hs.432656	NR_027113	ENSG00000235740	PHACTR2-AS1	-	PHACTR2 antisense RNA 1	ncRNA	nan	1.022	nan	0.425	0.170	0.095	0.500	0.191	0.052	0.151	0.101	0.472	0.683	0.429	0.125	0.849	0.819	1.330	2.064	0.683	0.576	5.078	1.446	0.614	0.535	0.256	0.446	0.154	0.129	0.816	0.642	0.321	0.534	3.145	2.401	0.197	0.360	0.332	0.332	0.036	0.075	0.697	0.807	0.500	0.472	0.049	0.158	0.068	0.079
513	chr1	148759633	148768671	+	0	NA	intron (NR_104217, intron 2 of 17).2	intron (NR_104217, intron 2 of 17).2	-41863	NM_001144032	730262		NM_001144032	ENSG00000271567	PPIAL4E	COAS2	peptidylprolyl isomerase A like 4E	protein-coding	1.600	nan	1.488	2.136	0.930	0.315	1.140	0.340	0.179	1.699	1.258	1.378	7.715	2.144	0.128	2.320	2.956	0.829	1.047	1.969	1.672	2.661	1.516	2.835	3.004	0.793	1.258	3.253	3.980	2.437	2.756	4.608	6.678	1.534	1.401	1.906	3.090	0.899	0.513	1.576	2.224	0.580	0.359	1.140	1.378	0.614	4.159	2.832	0.522
50	chr1	7305508	7345852	+	0	NA	intron (NM_015215, intron 5 of 22)	MER33|DNA|hAT-Charlie	480296	NR_038934	23261	Hs.397705	NM_015215	ENSG00000171735	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding	0.955	nan	1.135	3.883	0.983	0.410	1.659	0.141	0.118	0.294	0.203	0.616	4.126	0.048	0.115	0.284	0.269	0.121	0.156	1.208	1.260	2.811	1.182	0.175	0.147	0.181	nan	nan	6.405	nan	0.200	0.405	0.569	1.099	1.127	0.278	0.458	1.589	0.871	0.788	0.604	0.214	0.228	1.659	0.616	0.207	0.795	0.343	0.059
3938	chr19	2962175	2988380	+	0	NA	Intergenic	AluSz|SINE|Alu	-2254	NR_138612	79816	Hs.334507	NM_024760	ENSG00000104953	TLE6	GRG6|PREMBL	transducin like enhancer of split 6	protein-coding	1.037	2.085	1.791	0.778	1.568	0.896	1.739	0.641	0.394	0.640	0.409	2.698	5.036	0.265	0.088	0.555	1.175	0.455	0.812	3.184	3.399	1.661	0.539	0.224	0.207	1.415	1.827	2.369	nan	1.755	1.563	0.277	0.351	1.695	1.493	0.478	1.144	2.343	1.177	2.694	1.629	0.446	0.112	1.739	2.698	0.263	1.616	0.136	0.247
5903	chr4	54567148	54579287	+	0	NA	intron (NR_125918, intron 1 of 2)	intron (NR_125918, intron 1 of 2)	11149	NR_125918	100506444	Hs.636176	NR_125918	ENSG00000249341	LOC100506444	-	uncharacterized LOC100506444	ncRNA	nan	0.537	1.101	1.909	0.674	0.435	0.536	0.871	0.079	0.841	0.387	0.930	1.247	0.021	0.083	1.598	2.647	0.816	1.292	0.954	1.163	6.283	1.895	0.360	0.361	0.721	1.096	4.907	3.673	0.365	0.309	0.593	0.883	0.641	0.703	0.173	0.306	3.972	2.637	0.197	0.217	0.171	0.195	0.536	0.930	0.103	1.863	0.318	0.051
2633	chr14	60714275	60718838	+	0	NA	intron (NM_021003, intron 1 of 5)	CpG	590	NM_021003	5494	Hs.130036	NM_021003	ENSG00000100614	PPM1A	PP2C-ALPHA|PP2CA|PP2Calpha	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein-coding	11.172	nan	7.002	8.205	6.066	3.182	6.889	5.403	0.522	2.560	1.121	5.905	12.281	3.763	0.147	6.579	7.053	6.914	9.482	10.349	7.366	5.150	3.387	nan	17.853	3.672	4.581	8.478	nan	14.764	15.896	4.734	6.910	9.909	9.187	7.646	8.927	4.204	2.376	6.048	9.205	2.175	6.127	6.889	5.905	1.792	3.309	3.055	3.152
797	chr1	203617861	203633794	+	0	NA	intron (NM_001684, intron 1 of 20)	intron (NM_001684, intron 1 of 20)	29912	NM_001684	493	Hs.343522	NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding	1.357	1.504	1.769	0.210	0.619	0.281	1.576	0.391	0.319	0.196	0.187	0.624	0.592	0.114	0.133	1.782	3.493	4.575	8.309	0.899	1.105	2.279	0.920	nan	nan	0.522	0.890	0.639	0.789	0.443	0.333	1.615	2.361	0.395	0.564	0.381	0.844	0.645	0.518	0.282	0.415	0.054	0.402	1.576	0.624	0.229	0.089	2.494	0.207
7246	chr7	32323229	32342279	+	0	NA	intron (NM_001322059, intron 1 of 17)	intron (NM_001322059, intron 1 of 17)	6262	NM_001191058	5137	Hs.143821	NM_005020	ENSG00000154678	PDE1C	Hcam3|cam-PDE 1C|hCam-3	phosphodiesterase 1C	protein-coding	2.207	1.115	1.600	0.184	0.246	0.101	0.531	0.141	0.076	0.148	0.169	0.151	0.687	0.074	0.160	0.486	0.244	0.169	0.324	1.135	nan	0.132	0.082	0.465	0.497	1.594	nan	nan	nan	3.773	3.434	0.141	0.174	0.079	0.118	0.955	nan	0.798	0.731	0.168	0.052	0.010	1.228	0.531	0.151	0.616	0.112	0.021	0.540
2459	chr13	113239716	113245321	+	0	NA	promoter-TSS (NM_006322)	promoter-TSS (NM_006322)	-19	NM_001286279	10426	Hs.224152	NM_006322	ENSG00000126216	TUBGCP3	104p|GCP3|Grip104|SPBC98|Spc98|Spc98p	tubulin gamma complex associated protein 3	protein-coding	3.399	nan	4.076	6.995	6.013	3.721	8.962	1.682	0.317	1.710	0.674	6.180	7.603	1.917	0.088	9.095	8.625	4.596	7.287	7.741	6.848	10.418	5.853	3.330	3.575	0.899	1.274	7.167	8.619	5.568	6.254	6.529	10.589	6.927	7.477	4.951	5.108	1.052	0.565	14.263	4.142	1.799	7.714	8.962	6.180	0.932	2.843	2.379	1.167
3543	chr17	72348381	72377091	+	0	NA	promoter-TSS (NM_001331077)	promoter-TSS (NM_001331077)	-909	NM_181790	350383	Hs.574368	NM_181790	ENSG00000257008	GPR142	GPRg1b|PGR2	G protein-coupled receptor 142	protein-coding	2.335	1.178	2.541	0.666	1.051	0.427	0.837	0.080	0.079	0.136	0.098	0.683	2.971	0.061	0.087	0.749	0.969	0.229	0.283	3.510	3.174	0.549	0.140	0.076	0.079	nan	0.848	2.136	3.064	3.760	4.423	0.396	0.403	0.773	0.850	0.458	1.044	nan	0.691	1.186	0.843	0.178	0.279	0.837	0.683	0.586	0.472	0.098	0.117
5570	chr3	139390570	139415164	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-5975	NM_178177	349565	Hs.208673	NM_178177	ENSG00000163864	NMNAT3	FKSG76|PNAT-3|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	1.371	nan	nan	0.625	5.378	3.086	0.589	0.097	0.132	0.694	0.410	0.982	0.786	0.084	0.079	0.473	0.277	0.401	0.269	2.030	1.720	3.581	1.261	0.795	0.918	0.943	1.391	0.267	0.333	nan	1.113	0.696	1.159	0.549	0.658	0.400	0.698	1.547	0.919	0.974	0.982	0.100	0.279	0.589	0.982	0.256	0.149	0.439	0.208
6972	chr6	134286859	134305447	+	0	NA	intron (NM_004865, intron 1 of 6)	L1M5|LINE|L1	21852	NM_004865	9519	Hs.486507	NM_004865	ENSG00000028839	TBPL1	MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2	TATA-box binding protein like 1	protein-coding	1.143	0.918	1.527	0.408	0.349	0.112	0.358	0.537	0.069	0.093	0.092	0.277	0.549	0.257	0.109	1.818	1.460	5.372	3.515	0.971	1.025	nan	0.493	0.339	0.350	2.818	3.050	0.386	0.344	2.248	2.045	0.300	0.739	0.907	1.261	0.723	nan	0.596	0.456	0.045	0.347	0.133	0.116	0.358	0.277	0.109	0.108	0.271	0.416
4318	chr2	45392280	45399025	+	0	NA	Intergenic	Intergenic	86428	NR_033831	400952	Hs.468368	NR_033831	ENSG00000205054	LINC01121	UNQ6975	long intergenic non-protein coding RNA 1121	ncRNA	1.207	nan	1.769	1.904	0.400	0.182	0.459	2.880	0.193	0.606	0.489	3.161	15.737	0.273	0.142	1.324	1.623	0.373	0.913	nan	2.376	2.828	0.732	3.309	3.584	2.365	3.896	5.508	6.948	1.020	1.003	0.981	0.984	1.230	0.535	0.481	nan	nan	1.337	0.273	0.410	0.085	0.248	0.459	3.161	0.316	7.158	0.214	0.128
5207	chr22	24235391	24257608	+	0	NA	Intergenic	Intergenic	-5382	NR_038911	284889	Hs.632772	NR_038911		MIF-AS1	MIF-AS	MIF antisense RNA 1	ncRNA	2.759	nan	2.106	1.121	1.793	1.098	1.493	0.466	0.137	0.539	0.288	1.531	6.350	1.065	0.075	1.424	1.778	1.716	2.355	2.134	2.033	3.075	1.038	2.756	2.839	2.006	2.548	3.279	3.441	2.408	2.983	0.818	1.325	2.149	2.201	1.717	2.681	3.681	2.007	1.407	1.039	0.510	0.518	1.493	1.531	0.881	3.163	0.557	1.031
7645	chr8	37653787	37662876	+	0	NA	intron (NM_032777, intron 1 of 18)	intron (NM_032777, intron 1 of 18)	3930	NM_032777	25960	Hs.274136	NM_032777	ENSG00000020181	ADGRA2	GPR124|TEM5	adhesion G protein-coupled receptor A2	protein-coding	1.290	0.942	nan	0.889	0.519	0.141	0.770	3.304	0.507	0.311	0.182	0.481	1.086	0.466	0.092	6.364	8.174	3.536	3.297	1.893	1.835	0.976	0.307	0.762	0.697	0.742	1.083	0.353	0.401	0.529	0.593	1.392	2.959	0.389	0.323	0.770	1.430	0.757	0.773	0.128	0.264	0.106	0.061	0.770	0.481		0.695	1.348	0.256
5323	chr3	8529661	8548988	+	0	NA	intron (NR_033378, intron 2 of 3)	L2a|LINE|L2	4020	NR_033378	100288428	Hs.651576	NR_033378	ENSG00000227110	LMCD1-AS1	-	LMCD1 antisense RNA 1 (head to head)	ncRNA	0.695	1.145	1.099	0.507	0.292	0.142	0.187	0.759	0.151	0.113	0.107	0.635	0.885	0.297	0.078	1.902	1.789	3.975	6.821	0.704	0.741	0.839	0.218	0.653	0.653	0.382	0.641	1.179	1.249	0.524	0.291	0.764	1.200	0.213	0.240	0.399	0.861	0.181	0.246	0.110	0.208	0.030	0.316	0.187	0.635	0.025	0.579	0.538	0.327
645	chr1	167071477	167080421	+	0	NA	intron (NM_001080426, intron 2 of 5)	intron (NM_001080426, intron 2 of 5)	12622	NM_001080426	92235	Hs.632462	NM_001080426	ENSG00000198842	DUSP27	-	dual specificity phosphatase 27 (putative)	protein-coding	1.467	nan	4.351	0.119	0.248	0.179	3.526	0.162	0.073	0.384	0.232	0.093	1.244	0.048	0.072	0.595	0.511	0.382	0.667	0.563	nan	8.295	1.793	0.204	0.243	0.354	0.563	1.376	nan	0.327	0.237	1.109	1.780	5.014	6.996	0.947	2.119	0.501	0.447	0.072	0.486	2.056	0.232	3.526	0.093	0.467	0.137	1.717	0.619
2566	chr14	37714113	37742616	+	0	NA	intron (NM_138731, intron 4 of 13)	intron (NM_138731, intron 4 of 13)	61246	NM_001195296	145282	Hs.660396	NM_138731	ENSG00000151338	MIPOL1	CCDC193	mirror-image polydactyly 1	protein-coding	1.159	1.540	0.726	0.384	0.416	0.202	0.112	0.114	0.146	0.205	0.188	0.248	0.536	0.073	0.119	0.214	0.133	0.302	0.368	0.590	0.781	0.768	0.283	0.286	0.262	0.848	1.156	0.741	0.718	0.706	0.295	0.200	0.242	2.314	3.226	0.261	0.593	1.081	0.619	0.086	0.297	0.685	0.100	0.112	0.248	0.027	0.228	0.049	0.113
6406	chr5	112311346	112315935	+	0	NA	intron (NR_038352, intron 1 of 8)	intron (NR_038352, intron 1 of 8)	1233	NM_001242377	167227	Hs.443875	NM_152624	ENSG00000172795	DCP2	NUDT20	decapping mRNA 2	protein-coding	3.403	2.117	2.486	2.326	3.298	1.240	1.269	1.631	0.349	1.209	0.647	1.175	5.086	2.364	0.220	3.674	4.487	10.631	10.681	3.839	2.986	9.863	3.602	4.524	4.594	4.240	5.374	3.413	5.590	5.374	4.966	1.703	3.059	4.373	7.011	4.439	6.453	2.412	1.076	2.099	2.148	0.956	0.973	1.269	1.175	0.485	2.176	1.285	1.537
1176	chr10	88425285	88437676	+	0	NA	intron (NM_001080115, intron 1 of 6)	intron (NM_001080115, intron 1 of 6)	3054	NM_007078	11155	Hs.657271	NM_007078	ENSG00000122367	LDB3	CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP	LIM domain binding 3	protein-coding	1.899	0.815	1.363	0.887	1.143	0.698	0.454	0.248	0.039	0.240	0.065	1.620	0.480	0.080	0.076	1.842	2.369	0.290	0.355	4.359	3.080	2.703	0.910	0.441	0.538	0.984	1.262	3.508	3.352	2.960	3.355	0.501	0.856	1.552	1.212	1.173	2.660	2.399	1.263	3.446	3.768	0.576	8.310	0.454	1.620	1.096	0.578	0.496	0.485
1039	chr10	14383735	14426087	+	0	NA	Intergenic	AluJb|SINE|Alu	20365	NR_036181	100422843		NR_036181	ENSG00000266321	MIR4293	-	microRNA 4293	ncRNA	nan	0.752	1.175	0.256	0.332	0.231	0.103	0.253	0.120	0.153	0.099	0.747	0.326	0.056	0.075	0.448	0.356	0.374	0.877	0.372	0.355	5.645	1.422	0.139	0.148	0.747	1.088	1.332	1.201	0.386	0.251	0.356	0.508	1.817	1.366	0.331	0.842	0.963	0.549	0.018	0.071	0.629	0.370	0.103	0.747	0.030	0.021	0.420	0.221
2881	chr15	56533139	56548992	+	0	NA	Intergenic	Intergenic	-5582	NM_022841	64864	Hs.745089	NM_022841	ENSG00000181827	RFX7	RFXDC2	regulatory factor X7	protein-coding	1.779	1.464	2.544	0.747	1.832	1.121	1.415	0.821	0.122	0.931	0.739	1.233	2.549	0.919	0.082	0.805	1.236	0.878	1.336	1.651	1.691	1.877	0.681	2.072	2.001	2.329	2.756	1.336	1.994	5.762	6.224	0.943	1.977	4.056	3.962	1.682	2.698	1.072	0.640	0.315	0.651	1.595	0.433	1.415	1.233	0.442	0.993	1.105	0.838
28	chr1	2361760	2371315	+	0	NA	Intergenic	Intergenic	-22527	NM_153818	5192	Hs.732228	NM_002617	ENSG00000157911	PEX10	NALD|PBD6A|PBD6B|RNF69	peroxisomal biogenesis factor 10	protein-coding	1.525	nan	1.420	0.129	0.357	0.194	0.314	0.095	0.017	0.017	0.076		0.583	0.027	0.068	0.847	1.472	0.123	0.141	0.695	0.747	1.002	0.231	0.256	0.266	0.920	nan	nan	0.415	nan	0.923	0.431	0.570	0.162	0.090	0.189	0.236	0.342	0.379	2.318	0.092	0.030	0.192	0.314		1.946	0.063	0.237	0.055
4723	chr2	219844386	219850284	+	0	NA	intron (NM_017521, intron 2 of 2)	MER91A|DNA|hAT-Tip100	3044	NM_017521	54738	Hs.234759	NM_017521	ENSG00000163497	FEV	HSRNAFEV|PET-1	FEV, ETS transcription factor	protein-coding	nan	2.167	nan	0.773	1.687	0.722	3.971	0.052	0.044	0.375	0.152	1.089	2.471	0.767	0.076	1.064	1.241	0.152	0.167	1.872	1.228	1.939	0.352	0.165	0.193	1.052	1.220	0.958	nan	2.702	2.289	0.941	2.124	0.192	0.289	0.414	1.563	0.440	0.217	9.809	0.136	0.130	0.253	3.971	1.089	0.408	1.249	1.693	0.413
2087	chr12	94754489	94762964	+	0	NA	intron (NM_001346459, intron 10 of 15)	L1MC4a|LINE|L1	95038	NM_016122	51134	Hs.279209	NM_016122	ENSG00000173588	CEP83	CCDC41|NPHP18|NY-REN-58	centrosomal protein 83	protein-coding	0.743	0.830	0.571	0.070	0.345	0.042	0.130	0.240	0.277	0.094	0.217	0.084	nan	0.064	0.090	0.322	0.196	8.307	1.851	0.342	0.472	0.177	0.073	0.230	0.247	0.448	nan	0.294	nan	0.297	0.144	0.132	0.203	0.133	0.123	0.275	0.455	0.488	0.375	0.023	0.063	0.023	0.047	0.130	0.084	0.022	0.059	0.058	0.087
3474	chr17	56060511	56086739	+	0	NA	Intergenic	AluSx3|SINE|Alu	-8000	NM_001330393	7716	Hs.463569	NM_007146	ENSG00000136451	VEZF1	DB1|ZNF161	vascular endothelial zinc finger 1	protein-coding	3.611	3.408	3.941	3.689	4.851	2.558	2.235	2.303	0.235	2.480	1.156	3.835	7.037	2.134	0.142	4.254	4.443	3.093	4.303	6.128	5.953	4.599	2.293	nan	7.686	3.072	3.755	nan	nan	6.402	5.864	2.448	4.717	4.696	5.698	5.057	6.301	2.335	1.149	1.438	2.756	1.578	2.273	2.235	3.835	1.123	1.770	1.731	2.587
3320	chr17	19549875	19553773	+	0	NA	promoter-TSS (NM_000382)	promoter-TSS (NM_000382)	-240	NM_000382	224	Hs.499886	NM_000382	ENSG00000072210	ALDH3A2	ALDH10|FALDH|SLS	aldehyde dehydrogenase 3 family member A2	protein-coding	6.305	3.630	4.527	4.743	6.965	4.493	3.217	2.289	0.240	0.650	0.289	3.105	11.534	1.531	0.044	6.542	6.945	4.750	nan	11.211	8.817	5.824	1.141	3.626	3.267	4.864	5.980	11.373	14.597	nan	12.585	1.977	3.524	2.892	4.467	3.484	5.667	0.561	0.375	3.904	3.633	0.414	2.360	3.217	3.105	1.285	7.602	1.060	1.461
8332	chr9	138880972	138886437	+	0	NA	Intergenic	AluJo|SINE|Alu	-30478	NM_016172	10422	Hs.9194	NM_016172	ENSG00000130560	UBAC1	GBDR1|KPC2|UBADC1	UBA domain containing 1	protein-coding	nan	2.080	4.733	2.405	1.350	0.939	1.213	0.180	0.029	1.027	0.832	1.580	3.781	0.417	0.112	0.616	0.681	0.509	1.058	2.421	2.270	nan	0.288	0.162	0.100	0.363	0.564	6.243	10.332	1.059	1.052	0.536	1.145	1.207	1.031	0.710	0.896	0.798	0.582	2.021	1.804	0.087	0.058	1.213	1.580	0.667	5.273	1.431	0.068
5106	chr21	35947589	35993124	+	0	NA	intron (NM_004414, intron 1 of 3)	L1M5|LINE|L1	15786	NM_001285389	1827	Hs.282326	NM_004414	ENSG00000159200	RCAN1	ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.945	0.891	1.125	1.237	0.719	0.415	1.395	0.211	0.089	0.544	0.423	1.456	6.364	0.064	0.081	0.670	0.621	0.785	1.483	3.828	3.974	3.013	0.923	0.512	0.479	0.297	0.538	2.873	2.579	0.582	0.438	0.354	0.535	1.879	2.016	0.329	0.556	nan	1.009	5.912	3.598	0.436	0.174	1.395	1.456	0.083	0.391	0.102	0.241
2184	chr12	122109365	122135307	+	0	NA	Intergenic	AluSx1|SINE|Alu	-14776	NM_173855	283385	Hs.434154	NM_173855	ENSG00000139714	MORN3	-	MORN repeat containing 3	protein-coding	1.327	1.464	1.492	1.053	0.996	0.556	1.113	0.252	0.245	0.357	0.357	0.885	1.530	0.482	0.141	1.119	1.591	1.706	1.748	1.373	1.273	nan	1.208	1.038	1.115	0.636	1.105	2.999	3.636	1.037	0.736	0.617	0.728	1.975	2.183	0.668	1.318	1.820	0.989	0.615	1.017	0.501	0.550	1.113	0.885	0.250	0.516	0.271	0.329
2298	chr13	49548697	49554573	+	0	NA	intron (NR_103528, intron 1 of 25)	intron (NR_103528, intron 1 of 25)	890	NM_001278438	22862	Hs.508010	NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding	4.078	nan	nan	2.693	3.270	1.689	2.176	2.690	0.220	2.257	0.920	4.644	3.773	2.974	0.082	7.193	10.346	3.192	4.369	10.957	8.899	9.129	3.740	10.356	9.788	2.765	3.373	2.546	4.270	6.010	7.588	4.715	9.031	2.682	2.205	10.516	10.217	1.101	0.695	2.927	6.190	0.404	3.132	2.176	4.644	1.058	2.181	3.548	2.660
3161	chr16	69121877	69143044	+	0	NA	Intergenic	Intergenic	-7007	NM_001199280	3038	Hs.592069	NM_005329	ENSG00000103044	HAS3	-	hyaluronan synthase 3	protein-coding	nan	nan	0.741	1.473	1.083	0.628	0.656	0.191	0.129	0.105	0.109	0.914	5.969	0.158	0.090	1.048	2.223	0.161	0.245	1.298	1.450	1.169	0.373	0.422	0.522	0.351	nan	2.454	3.246	0.937	0.822	0.326	0.758	0.273	0.210	0.313	0.538	2.352	1.120	3.023	1.488	0.063	0.256	0.656	0.914	0.211	0.216	0.469	0.109
8341	chr9	139734162	139745506	+	0	NA	exon (NM_001080482, exon 1 of 1)	exon (NM_001080482, exon 1 of 1)	967	NM_001080482	389813	Hs.495485	NM_001080482	ENSG00000232434	C9orf172	-	chromosome 9 open reading frame 172	protein-coding	nan	2.435	3.263	4.264	2.311	1.159	2.515	1.397	0.395	1.224	0.703	1.783	8.028	2.037	0.075	1.013	2.576	1.799	2.516	4.280	4.204	nan	0.912	1.502	1.447	1.259	2.016	5.040	5.495	2.468	3.316	0.881	1.168	2.322	1.960	1.431	2.877	1.740	0.838	2.965	2.952	0.695	1.401	2.515	1.783	1.132	3.353	0.721	1.049
6643	chr6	19714393	19739073	+	0	NA	Intergenic	Intergenic	78257	NR_134649	100506885	Hs.346489	NR_134649	ENSG00000228412	LOC100506885	-	uncharacterized LOC100506885	ncRNA	1.236	nan	1.312	0.249	0.494	0.220	0.702	0.424	0.156	0.393	0.209	0.934	0.709	2.690	0.147	0.491	0.530	0.223	0.483	0.536	0.703	1.260	0.345	0.343	0.359	0.860	1.178	0.305	0.270	0.746	0.460	0.483	0.512	0.741	1.293	1.374	3.998	0.738	0.629	0.151	0.570	0.097	0.264	0.702	0.934	0.337	0.066	0.121	0.836
7936	chr8	131053638	131074941	+	0	NA	TTS (NM_018482)	TTS (NM_018482)	32725	NR_045385	100507117	Hs.106015	NR_045385	ENSG00000280543	ASAP1-IT2	-	ASAP1 intronic transcript 2	ncRNA	nan	0.751	0.810	0.322	0.497	0.263	0.381	1.034	0.148	0.096	0.116	0.234	4.421	0.041	0.071	0.425	0.627	0.761	0.917	0.865	0.986	0.406	0.231	nan	3.040	0.468	0.702	1.173	1.658	0.390	0.278	0.381	0.870	0.237	0.265	0.351	0.650	1.468	0.760	2.631	0.893	0.050	0.119	0.381	0.234	0.041	0.129	0.247	0.116
8113	chr9	34177946	34199972	+	0	NA	intron (NM_001171201, intron 1 of 5)	AluSq2|SINE|Alu	9956	NM_001171203	51271	Hs.268963	NM_016525	ENSG00000165006	UBAP1	NAG20|UAP|UBAP|UBAP-1	ubiquitin associated protein 1	protein-coding	1.178	nan	1.123	0.680	0.771	0.356	0.630	0.748	0.249	0.548	0.395	0.784	1.904	0.459	0.100	0.574	0.785	3.048	4.235	1.141	1.106	1.964	0.901	3.125	3.185	1.154	1.576	0.996	1.425	1.248	0.928	0.721	1.159	0.992	1.119	1.060	1.485	1.490	0.964	0.601	0.385	0.139	0.464	0.630	0.784	0.141	0.323	0.396	0.306
5465	chr3	112344049	112363185	+	0	NA	intron (NM_199512, intron 2 of 7)	intron (NM_199512, intron 2 of 7)	6373	NM_199512	151887	Hs.477128	NM_199511	ENSG00000091986	CCDC80	DRO1|SSG1|URB|okuribin	coiled-coil domain containing 80	protein-coding	1.951	nan	0.808	0.385	0.680	0.368	0.481	2.514	0.075	0.278	0.170	1.149	0.600	0.080	0.086	0.418	0.367	0.366	0.538	0.633	nan	6.084	2.943	0.345	0.393	nan	1.123	0.823	0.645	0.742	0.358	0.211	0.254	0.345	0.471	0.519	0.747	1.308	1.029	0.039	0.912	0.080	0.157	0.481	1.149	0.031	0.982	0.037	0.152
1344	chr11	21574069	21591669	+	0	NA	intron (NM_201551, intron 16 of 18)	intron (NM_201551, intron 16 of 18)	-631853	NM_213599	203859	Hs.154329	NM_213599	ENSG00000171714	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding	0.868	1.042	1.014	0.330	0.294	0.200	0.124	0.068	0.073	0.934	0.422	0.536	0.471	0.049	0.085	0.856	0.560	2.164	3.743	0.414	0.587	2.195	1.107	0.262	0.228	0.335	0.517	0.726	0.892	0.412	0.190	0.418	0.875	3.265	3.613	0.291	0.481	0.774	0.485	0.054	0.152	1.075	0.086	0.124	0.536		0.035	0.428	0.143
2494	chr14	24006113	24027274	+	0	NA	intron (NM_033400, intron 1 of 9)	intron (NM_033400, intron 1 of 9)	4165	NM_033400	85446	Hs.508937	NM_033400	ENSG00000136367	ZFHX2	ZFH-5|ZNF409	zinc finger homeobox 2	protein-coding	nan	1.391	1.405	2.212	2.178	1.230	1.501	0.718	0.266	0.884	0.432	2.233	2.977	1.159	0.137	1.707	2.251	1.363	1.635	3.731	3.674	3.823	1.108	2.289	2.393	2.175	3.169	2.442	nan	2.869	2.635	1.759	2.640	2.071	2.120	0.843	2.236	2.980	1.411	1.093	1.848	0.453	0.906	1.501	2.233	0.715	2.890	1.617	0.538
3840	chr18	55709789	55790021	+	0	NA	intron (NM_001144964, intron 1 of 30)	AluSx|SINE|Alu	35447	NM_001144964	23327	Hs.185677	NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding	nan	1.302	1.963	0.448	1.304	0.680	0.602	0.149	0.084	0.119	0.115	0.656	1.356	0.185	0.076	1.732	1.790	4.206	8.057	1.236	1.162	3.152	0.930	3.221	3.288	0.468	0.726	0.924	1.084	1.151	1.267	1.310	1.853	1.759	2.142	1.173	3.125	nan	1.528	0.405	0.569	0.413	0.307	0.602	0.656	0.218	0.232	1.226	1.373
7849	chr8	103422439	103426050	+	0	NA	intron (NM_015902, intron 1 of 58)	CpG	673	NM_015902	51366	Hs.492445	NM_015902	ENSG00000104517	UBR5	DD5|EDD|EDD1|HYD	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	12.740	nan	9.965	10.349	9.264	4.580	6.910	6.137	0.847	3.323	1.048	10.345	16.460	4.449	0.103	4.941	4.517	6.977	9.143	17.197	13.086	nan	3.476	24.220	24.686	4.941	5.995	13.978	20.929	nan	11.872	3.710	8.621	6.838	5.952	7.910	9.237	3.407	1.624	5.210	7.404	2.086	5.270	6.910	10.345	1.524	4.784	4.583	4.259
2329	chr13	67790821	67818502	+	0	NA	promoter-TSS (NM_020403)	promoter-TSS (NM_020403)	-193	NM_203487	5101	Hs.654709	NM_020403	ENSG00000184226	PCDH9	-	protocadherin 9	protein-coding	nan	1.340	nan	0.289	0.182	0.105	0.841	0.082	0.082	0.243	0.210	0.325	1.821	0.129	0.075	0.826	0.756	0.264	0.361	0.929	0.896	2.144	0.667	0.293	0.299	0.834	1.023	0.693	0.871	0.771	0.604	0.198	0.308	6.316	7.402	1.041	1.963	0.322	0.182	0.028	0.135	1.500	0.672	0.841	0.325	0.227	0.293	0.111	0.354
3338	chr17	27275278	27281249	+	0	NA	5' UTR (NM_001033561, exon 1 of 15)	5' UTR (NM_001033561, exon 1 of 15)	245	NM_001033561	57649	Hs.444173	NM_020889	ENSG00000109118	PHF12	PF1	PHD finger protein 12	protein-coding	nan	nan	nan	3.153	8.360	4.398	4.407	3.539	0.242	1.834	1.021	6.149	15.383	8.357	0.244	7.510	6.804	6.690	9.489	7.864	7.196	6.772	3.081	10.187	10.830	4.605	5.367	9.144	14.165	13.666	11.888	6.113	8.838	3.539	4.579	5.101	7.250	2.551	1.178	6.861	6.584	1.152	4.243	4.407	6.149	2.768	2.856	5.139	3.889
4437	chr2	96713122	96738744	+	0	NA	Intergenic	Intergenic	-24211	NM_001321531	150763	Hs.348629	NM_207328	ENSG00000186281	GPAT2	CT123	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	0.997	0.568	1.009	0.553	0.395	0.250	0.595	0.076	0.056	1.411	0.764	1.112	1.355	0.055	0.095	1.110	1.230	0.302	0.407	1.996	1.814	3.700	0.888	0.470	0.528	0.266	0.445	0.253	0.310	0.737	1.098	0.433	0.379	1.286	0.974	0.537	0.824	1.543	0.898	0.415	0.311	0.436	0.330	0.595	1.112	0.570	0.420	0.054	0.193
6150	chr5	4531081	4559999	+	0	NA	Intergenic	Intergenic	-228054	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA	0.417	0.785	0.829	0.128	0.547	0.276	0.706	0.181	0.138	0.167	0.154	0.269	1.087	0.033	0.097	0.436	0.304	4.112	6.698	0.930	0.929	0.613	0.231	0.056	0.061	0.206	0.363	nan	0.510	nan	0.641	0.408	0.841	0.039	0.058	0.082	0.133	0.224	nan	0.017	1.450	0.013	1.115	0.706	0.269	0.348	0.109	0.514	0.039
620	chr1	162598668	162608741	+	0	NA	intron (NM_001014796, intron 1 of 18)	MIRb|SINE|MIR	1476	NM_001014796	4921	Hs.275757	NM_006182	ENSG00000162733	DDR2	MIG20a|NTRKR3|TKT|TYRO10	discoidin domain receptor tyrosine kinase 2	protein-coding	1.385	nan	1.311	0.081	0.353	0.144	0.266	4.760	0.336	0.140	0.224	0.237	0.306	0.095	0.094	0.444	0.261	0.321	0.664	0.404	nan	0.229	0.108	0.200	0.131	4.752	5.704	0.343	nan	0.423	0.223	0.332	0.497	0.348	0.347	0.647	1.786	0.724	0.582	0.023	0.278	0.019	0.095	0.266	0.237	0.067	0.010	0.167	2.145
5477	chr3	114606181	114623208	+	0	NA	intron (NM_001164343, intron 3 of 11)	MIRb|SINE|MIR	4775	NR_121662	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding	1.385	nan	1.866	0.273	2.482	1.264	0.192	0.356	0.121	1.134	0.700	1.800	0.372	0.038	0.111	0.425	0.410	0.370	0.454	1.491	nan	4.835	2.486	1.124	1.056	nan	4.816	0.924	1.590	2.346	2.071	0.140	0.229	0.640	0.403	0.390	0.888	1.550	1.092	2.251	0.265	0.056	0.099	0.192	1.800	0.473	0.486	0.076	0.236
5565	chr3	136937749	136952756	+	0	NA	Intergenic	Intergenic	268545	NM_144717	53833	Hs.61232	NM_144717	ENSG00000174564	IL20RB	DIRS1|FNDC6|IL-20R2	interleukin 20 receptor subunit beta	protein-coding	0.727	nan	nan	0.082	0.328	0.213	1.846	0.081	0.107	0.125	0.114	0.048	0.595	0.043	0.070	0.309	0.258	0.436	0.349	4.817	4.330	0.197	0.153	0.189	0.170	0.189	0.335	0.460	0.710	nan	0.352	0.160	0.274	0.031	0.080	0.284	0.303	0.180	0.305	4.154	0.118		0.216	1.846	0.048	0.190	0.007	0.086	0.124
8389	chrX	53709307	53714226	+	0	NA	intron (NM_031407, intron 2 of 83)	intron (NM_031407, intron 2 of 83)	1908	NM_031407	10075	Hs.136905	NM_031407	ENSG00000086758	HUWE1	ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1	HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase	protein-coding	5.852	3.932	2.770	4.614	8.129	4.673	2.902	2.287	0.167	2.682	1.004	4.448	12.117	5.235	0.131	3.456	3.218	7.940	9.080	11.806	9.928	8.209	4.851	18.935	19.501	4.000	5.026	9.270	17.412	13.536	14.575	5.391	8.503	5.017	5.573	11.616	9.038	3.748	1.834	2.858	3.030	0.828	2.679	2.902	4.448	1.274	5.012	2.452	2.582
4194	chr2	6191770	6198839	+	0	NA	Intergenic	Intergenic	73194	NR_026833	400940	Hs.378814	NM_207479		LOC400940	-	uncharacterized LOC400940	ncRNA	0.858	0.802	0.914	0.417	0.510	0.377	2.229	0.054	0.068	0.423	0.246	0.984	2.649	0.107	0.120	0.313	0.266	0.282	0.405	0.664	0.774	8.905	3.384	0.015	0.088	0.557	0.709	1.421	1.703	1.024	0.663	0.092	0.162	2.445	2.031	0.310	0.602	0.216	0.145	0.198	7.517	0.719	0.068	2.229	0.984	0.178	0.545	0.042	0.243
7240	chr7	30632802	30638187	+	0	NA	intron (NM_002047, intron 1 of 16)	intron (NM_002047, intron 1 of 16)	985	NM_002047	2617	Hs.404321	NM_002047	ENSG00000106105	GARS	CMT2D|DSMAV|GlyRS|HMN5|SMAD1	glycyl-tRNA synthetase	protein-coding	7.797	4.532	6.108	5.292	4.550	2.229	4.011	5.639	0.238	4.001	1.880	8.008	9.516	9.784	0.301	10.111	10.664	5.068	6.997	9.324	nan	9.678	4.668	23.752	25.518	5.449	nan	nan	nan	5.714	6.975	5.053	8.321	8.672	9.442	5.753	9.421	3.477	1.989	3.658	4.572	1.181	4.679	4.011	8.008	1.404	3.618	3.043	2.292
937	chr1	235488332	235495243	+	0	NA	promoter-TSS (NM_001206794)	promoter-TSS (NM_001206794)	34	NM_001037277	9453	Hs.730768	NM_004837	ENSG00000152904	GGPS1	GGPPS|GGPPS1	geranylgeranyl diphosphate synthase 1	protein-coding	6.928	5.570	4.502	6.474	5.760	3.314	3.693	3.653	0.280	4.191	2.372	5.245	8.712	3.972	0.157	5.548	5.681	10.562	15.953	11.619	10.068	nan	3.513	18.590	19.225	4.255	5.224	nan	7.920	6.334	6.842	2.037	4.597	2.307	2.842	6.852	8.222	nan	1.441	3.619	3.072	0.386	2.502	3.693	5.245	0.958	2.473	0.920	1.823
3266	chr17	7779526	7798290	+	0	NA	promoter-TSS (NM_001330111)	promoter-TSS (NM_001330111)	-202	NM_001330111	84316	Hs.565094	NM_032356	ENSG00000183011	NAA38	LSMD1|PFAAP2	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	3.121	1.704	3.326	2.109	4.170	2.109	3.162	1.543	0.239	1.993	1.030	5.866	6.728	1.819	0.099	5.069	6.777	2.919	4.698	9.188	8.564	2.890	1.046	2.676	2.663	2.091	2.936	6.947	6.639	3.102	2.883	1.825	3.608	2.179	2.002	3.082	5.696	2.033	0.889	4.944	3.226	1.039	1.247	3.162	5.866	1.630	3.946	2.901	2.275
3833	chr18	55364656	55387501	+	0	NA	intron (NM_005603, intron 2 of 27)	intron (NM_005603, intron 2 of 27)	78544	NM_001242804	100505549	Hs.660645	NM_001242804		LOC100505549	-	uncharacterized LOC100505549	protein-coding	nan	1.026	1.075	0.290	0.808	0.445	0.658	0.245	0.085	0.324	0.207	2.382	0.487	0.066	0.082	0.505	0.472	0.516	1.621	0.674	0.898	8.494	4.500	3.711	4.055	0.265	0.403	1.289	1.364	0.574	0.768	1.049	1.495	1.314	1.887	0.296	0.522	nan	1.973	0.188	0.308	0.359	0.289	0.658	2.382	0.064	0.357	0.618	0.251
2311	chr13	52351926	52397369	+	0	NA	intron (NM_001031719, intron 1 of 7)	intron (NM_001031719, intron 1 of 7)	3651	NM_001031719	79758	Hs.266728	NM_024705	ENSG00000102796	DHRS12	SDR40C1	dehydrogenase/reductase 12	protein-coding	1.579	nan	nan	0.402	0.550	0.265	0.637	0.384	0.075	0.257	0.145	1.644	1.742	0.257	0.071	1.415	1.845	0.397	0.681	2.404	2.328	nan	0.611	0.867	0.912	0.767	1.036	1.083	1.509	2.454	2.683	0.755	1.099	0.869	0.849	2.047	nan	0.479	0.291	0.881	1.999	0.174	0.664	0.637	1.644	1.198	0.245	0.310	1.188
3631	chr18	266486	269746	+	0	NA	promoter-TSS (NM_005131)	promoter-TSS (NM_005131)	-57	NM_005131	9984	Hs.712543	NM_005131	ENSG00000079134	THOC1	HPR1|P84|P84N5	THO complex 1	protein-coding	6.683	4.070	4.318	5.881	3.593	2.016	2.299	2.115	0.222	2.215	1.057	16.020	nan	3.914	0.260	6.268	6.239	7.448	11.397	14.101	10.360	12.888	6.147	19.001	21.891	2.439	nan	8.557	13.026	nan	6.607	2.356	4.085	8.002	7.210	4.782	nan	nan	3.237	2.745	1.885	1.220	1.629	2.299	16.020	1.607	2.552	0.876	1.873
5002	chr20	52176964	52244595	+	0	NA	Intergenic	CpG	-11143	NM_006526	7764	Hs.155040	NM_006526	ENSG00000171940	ZNF217	ZABC1	zinc finger protein 217	protein-coding	1.807	1.796	1.443	0.528	0.630	0.341	1.215	2.391	0.423	0.090	0.107	0.122	0.757	6.508	0.286	0.846	nan	1.235	3.255	0.942	0.957	0.306	0.133	0.775	0.793	1.194	1.515	0.835	1.155	1.815	1.536	0.741	1.257	0.085	0.107	1.616	2.607	0.314	0.366	0.712	0.915	0.048	0.837	1.215	0.122	0.295	0.148	0.536	0.682
2556	chr14	36668901	36689183	+	0	NA	Intergenic	Intergenic	-33185	NR_049735	100886964	Hs.742592	NR_049735		PTCSC3	-	papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding)	ncRNA	1.168	3.394	0.593	2.025	0.400	0.301	0.308	0.373	0.190	1.618	0.633	0.370	0.729	0.100	0.099	0.165	0.096	0.851	0.339	0.541	0.747	0.685	0.717	0.270	0.265	0.366	0.612	1.924	1.973	0.683	0.236	0.129	0.203	0.721	1.022	0.138	0.253	1.850	0.693	0.892	1.850	0.280	0.108	0.308	0.370	0.095	1.849	0.039	0.055
6399	chr5	107139462	107146210	+	0	NA	Intergenic	L2a|LINE|L2	-136240	NM_001962	1946	Hs.288741	NM_001962	ENSG00000184349	EFNA5	AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS	ephrin A5	protein-coding	1.807	1.333	1.052	0.052	4.459	1.846	3.355	0.138	0.075	0.115	0.098	0.088	0.450	0.079	0.048	0.224	0.334	0.475	0.597	1.530	1.238	4.929	1.080	0.212	0.131	0.934	1.267	0.343	0.412	1.768	2.432	0.116	0.210	6.797	6.395	1.909	4.538	2.495	1.704	0.148	0.425	2.217	4.920	3.355	0.088	0.993	0.151	0.088	1.817
1786	chr12	5483649	5507220	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-45846	NM_001102654	4908	Hs.99171	NM_002527	ENSG00000185652	NTF3	HDNF|NGF-2|NGF2|NT-3|NT3	neurotrophin 3	protein-coding	0.832	nan	nan	3.107	0.260	0.102	0.240	0.070	0.055	1.546	0.785	1.472	3.173	0.041	0.112	0.221	0.173	0.265	0.692	nan	0.981	5.758	1.775	0.441	0.385	0.382	0.654	4.300	3.614	0.348	0.198	0.136	0.197	2.464	2.335	0.481	nan	1.935	1.044	0.768	0.840	0.526	0.137	0.240	1.472	0.024	0.116	0.054	0.400
6057	chr4	158475700	158481754	+	0	NA	Intergenic	MER74C|LTR|ERVL	-14915	NR_026992	340017	Hs.428275	NR_026992	ENSG00000234111	LOC340017	-	uncharacterized LOC340017	ncRNA	nan	1.110	0.537	0.104	0.181	0.053	0.042	0.049	0.081	0.051	0.068	0.118	0.167	0.055	0.092	0.570	0.337	11.473	4.611	0.173	0.268	0.201	0.081	0.738	0.809	0.649	0.640	0.146	0.167	0.507	0.245	0.211	0.662	0.050	0.110	0.306	0.632	0.419	0.230	0.028	0.030		0.066	0.042	0.118		0.017	0.339	0.111
8110	chr9	33712582	33722415	+	0	NA	Intergenic	HAL1b|LINE|L1	20916	NR_109755	101929688	Hs.372465	NR_109755	ENSG00000233776	LINC01251	-	long intergenic non-protein coding RNA 1251	ncRNA	1.364	nan	0.871	0.313	0.647	0.164	0.274	0.115	0.066	4.173	2.280	0.671	0.537	0.055	0.089	0.200	0.158	0.298	0.346	1.137	0.975	7.394	2.409	0.329	0.315	0.288	0.660	0.323	0.294	1.174	1.250	0.225	0.310	2.940	1.695	0.470	1.026	3.890	1.918	0.116	0.090	0.389	1.117	0.274	0.671	0.070	0.315	0.071	0.255
2320	chr13	60834053	60845555	+	0	NA	intron (NR_047022, intron 1 of 2)	intron (NR_047022, intron 1 of 2)	2434	NR_047022	100874169	Hs.171027	NR_047022		LINC00434	-	long intergenic non-protein coding RNA 434	ncRNA	nan	2.048	nan	1.870	0.791	0.391	0.512	0.123	0.071	0.450	0.183	2.301	3.428	0.075	0.087	0.759	0.591	0.568	0.448	3.260	2.731	5.077	1.631	0.152	0.159	0.077	0.117	1.924	1.862	0.304	0.167	0.400	0.888	6.117	5.385	0.392	0.814	1.321	0.601	0.059	2.330	1.448	0.198	0.512	2.301	0.047	0.333	0.284	0.065
2440	chr13	110338626	110361208	+	0	NA	Intergenic	Intergenic	-30704	NR_103846	101409253	Hs.578072	NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA	0.822	nan	1.244	1.324	1.769	1.006	0.559	0.057	0.106	0.306	0.111	0.970	2.234	0.081	0.085	0.719	0.625	0.238	0.399	1.169	0.926	6.714	2.103	0.182	0.230	0.043	0.107	2.385	1.468	0.367	0.193	2.956	2.689	0.737	0.986	0.237	0.468	0.404	0.213	0.705	1.870	0.081	1.468	0.559	0.970	0.294	1.906	1.489	0.171
5257	chr22	36923610	36935508	+	0	NA	Intergenic	THE1B|LTR|ERVL-MaLR	-4282	NM_003753	8664	Hs.55682	NM_003753	ENSG00000100353	EIF3D	EIF3S7|eIF3-p66|eIF3-zeta	eukaryotic translation initiation factor 3 subunit D	protein-coding	2.103	nan	1.748	1.225	1.887	0.970	1.362	0.645	0.232	0.857	0.563	4.208	3.117	1.372	0.145	1.755	1.968	1.736	2.648	5.789	5.088	1.955	0.823	1.862	2.112	1.564	nan	2.427	3.171	nan	3.263	0.724	1.325	2.864	3.316	1.522	2.165	1.837	0.915	1.973	1.936	0.592	0.661	1.362	4.208	0.803	1.571	0.598	0.689
6924	chr6	119393748	119401340	+	0	NA	intron (NM_001100411, intron 1 of 16)	intron (NM_001100411, intron 1 of 16)	2268	NM_024581	79632	Hs.443789	NM_024581	ENSG00000111879	FAM184A	C6orf60	family with sequence similarity 184 member A	protein-coding	nan	1.633	nan	1.546	1.040	0.592	1.534	0.371	0.085	0.678	0.199	0.591	3.766	1.152	0.113	2.575	3.591	0.168	0.185	2.424	nan	nan	1.653	2.486	2.552	1.283	nan	1.227	2.696	2.850	3.507	1.367	3.287	3.462	3.119	2.297	nan	1.392	0.917	0.805	0.935	0.501	4.609	1.534	0.591	0.245	0.974	0.741	0.570
7789	chr8	93063521	93084477	+	0	NA	intron (NM_001198633, intron 1 of 10)	intron (NM_001198633, intron 1 of 10)	1192	NM_004349	862	Hs.368431	NM_004349	ENSG00000079102	RUNX1T1	AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2	RUNX1 translocation partner 1	protein-coding	nan	0.955	3.387	0.330	0.364	0.153	0.898	1.699	0.122	0.150	0.099	0.846	0.695	0.018	0.092	0.309	0.156	0.218	nan	1.363	1.333	1.154	0.400	0.188	0.198	1.046	1.328	1.316	1.334	3.346	3.028	0.179	0.235	0.451	0.304	1.012	2.808	0.420	0.369	0.218	0.190	0.154	0.501	0.898	0.846	0.237	0.276	0.061	1.409
93	chr1	14728806	14750861	+	0	NA	Intergenic	AluY|SINE|Alu	-185380	NM_015209	23254	Hs.368823	NM_015209	ENSG00000189337	KAZN	KAZ	kazrin, periplakin interacting protein	protein-coding	0.538	0.661	nan	0.311	0.312	0.186	0.100	0.048	0.088	0.074	0.078	0.158	0.507	0.057	0.115	2.045	1.473	0.622	0.397	0.380	0.406	0.587	0.216	7.025	nan	0.134	nan	1.191	1.125	nan	0.094	0.441	0.683	0.026	0.077	0.146	0.228	0.445	0.410	0.061	0.060	0.013	0.014	0.100	0.158	0.009	0.064	0.197	0.034
5735	chr3	182449056	182460397	+	0	NA	Intergenic	MIR|SINE|MIR	-56565	NM_014616	23200	Hs.478429	NM_014616	ENSG00000058063	ATP11B	ATPIF|ATPIR	ATPase phospholipid transporting 11B (putative)	protein-coding	1.043	1.019	1.091	0.805	1.119	0.539	0.783	0.553	0.283	0.385	0.182	0.986	0.577	0.047	0.075	0.265	0.170	0.314	0.782	0.849	0.809	6.666	1.200	0.930	1.161	0.303	0.367	3.306	3.049	0.676	0.339	0.245	0.280	0.259	0.501	0.236	0.317	0.475	0.615	0.034	0.165	0.025	1.142	0.783	0.986	0.637	0.054	0.120	0.092
3055	chr16	13122882	13151182	+	0	NA	intron (NM_001145204, intron 2 of 4)	MLT1J1|LTR|ERVL-MaLR	141555	NM_001145204	729993	Hs.130661	NM_001145204	ENSG00000237515	SHISA9	CKAMP44	shisa family member 9	protein-coding	1.086	0.616	nan	0.050	0.550	0.325	0.100	0.064	0.046	0.055	0.094	0.038	0.355	0.039	0.078	0.267	0.200	0.054	0.052	0.167	0.225	0.253	0.115	0.238	0.226	0.766	1.098	0.160	0.187	nan	0.464	0.196	0.300	0.107	0.160	1.822	5.730	0.714	0.537	0.055	0.064	0.027	0.033	0.100	0.038	0.058	0.047	0.042	2.717
6807	chr6	52147544	52158314	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3250	NM_001270472	4172	Hs.179565	NM_002388	ENSG00000112118	MCM3	HCC5|P1-MCM3|P1.h|RLFB	minichromosome maintenance complex component 3	protein-coding	3.378	1.342	nan	1.871	2.346	1.116	1.974	1.485	0.180	1.200	0.579	1.912	2.889	1.018	0.146	2.385	1.966	1.629	2.126	2.252	2.396	3.330	1.558	2.475	2.764	1.988	2.611	5.063	7.426	4.552	4.371	1.460	2.017	3.851	4.941	3.566	3.971	2.441	1.379	1.271	0.570	0.838	0.398	1.974	1.912	0.486	1.262	0.523	1.030
7839	chr8	102213406	102221227	+	0	NA	intron (NM_001267708, intron 1 of 5)	intron (NM_001267708, intron 1 of 5)	644	NM_001042510	51123	Hs.374485	NM_016096	ENSG00000120963	ZNF706	HSPC038|PNAS-106|PNAS-113	zinc finger protein 706	protein-coding	7.708	nan	10.177	7.067	7.850	3.909	2.713	3.633	0.472	1.792	0.881	8.072	24.199	1.475	0.131	3.267	3.257	4.020	6.541	10.926	8.608	nan	4.220	12.445	12.582	4.096	nan	14.897	20.038	nan	3.710	1.927	4.561	7.746	7.888	5.179	nan	4.062	2.149	5.430	5.970	2.145	2.841	2.713	8.072	0.983	3.051	1.242	1.680
2429	chr13	107151196	107189209	+	0	NA	intron (NM_004093, intron 1 of 4)	intron (NM_004093, intron 1 of 4)	17186	NM_004093	1948	Hs.149239	NM_004093	ENSG00000125266	EFNB2	EPLG5|HTKL|Htk-L|LERK5	ephrin B2	protein-coding	1.196	0.946	0.806	0.292	0.677	0.380	1.004	0.101	0.064	0.143	0.121	0.576	1.381	0.057	0.093	1.972	1.629	2.810	4.315	1.450	1.151	0.369	0.170	3.366	3.397	0.929	nan	0.971	1.035	0.586	0.558	0.644	1.799	1.295	0.871	1.345	nan	0.251	0.215	0.066	0.355	0.177	0.432	1.004	0.576	0.175	0.250	0.551	0.475
2790	chr14	104883888	104910635	+	0	NA	Intergenic	CpG	-148760	NM_001286399	400258	Hs.153827	NM_001008404	ENSG00000184601	C14orf180	C14orf77|NRAC	chromosome 14 open reading frame 180	protein-coding	1.341	1.181	0.535	0.144	0.147	0.106	0.144	0.141	0.079	0.264	0.151	0.067	2.716	0.053	0.101	1.000	1.519	0.213	0.267	1.632	1.711	0.237	0.124	0.074	0.072	3.397	3.628	1.530	2.326	1.298	1.331	1.265	1.433	0.601	0.764	0.309	0.415	2.528	1.329	6.620	0.198	0.114	0.080	0.144	0.067	0.312	0.178	0.823	0.129
3876	chr18	64794820	64814572	+	0	NA	Intergenic	MLT1H-int|LTR|ERVL-MaLR	55875	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA	0.871	1.446	0.792	0.494	0.605	0.308	0.613	0.080	0.050	0.494	0.441	0.066	1.098	0.011	0.074	0.363	0.237	0.164	0.293	0.916	1.277	9.561	5.002	0.434	nan	1.383	nan	3.350	3.626	0.456	0.248	0.144	0.139	6.140	6.640	0.226	0.426	6.238	2.508	0.613	0.327	1.799	0.248	0.613	0.066	0.093	0.610	0.035	0.057
3688	chr18	22000401	22016815	+	0	NA	intron (NM_018439, intron 2 of 10)	intron (NM_018439, intron 2 of 10)	1999	NM_018439	55364	Hs.515317	NM_018439	ENSG00000154059	IMPACT	RWDD5	impact RWD domain protein	protein-coding	1.674	1.213	1.472	1.526	0.744	0.304	0.941	0.359	0.118	0.627	0.420	0.518	1.287	0.561	0.118	1.613	1.327	0.294	nan	1.042	1.053	5.493	2.054	0.991	0.938	1.280	1.593	1.037	1.302	2.056	1.907	0.513	0.603	2.325	2.346	1.294	1.650	3.131	1.818	0.567	0.395	0.398	0.434	0.941	0.518	0.431	0.569	0.181	0.702
4576	chr2	165681238	165734420	+	0	NA	Intergenic	L1MA9|LINE|L1	-9151	NM_001278460	22837	Hs.470457	NM_014900	ENSG00000082438	COBLL1	COBLR1	cordon-bleu WH2 repeat protein like 1	protein-coding	1.511	1.352	nan	0.347	0.765	0.405	0.292	0.271	0.087	0.473	0.336	0.531	1.317	0.163	0.080	0.524	0.548	0.758	1.143	0.437	0.468	0.810	0.291	0.924	0.986	5.427	5.987	0.509	0.529	1.298	1.246	0.274	0.421	0.006	0.001	1.226	3.358	0.497	0.409	0.034	0.134	0.004	0.254	0.292	0.531	0.227	0.114	0.072	1.018
8426	chrX	153988906	153993361	+	0	NA	non-coding (NR_110021, exon 1 of 14)	non-coding (NR_110021, exon 1 of 14)	116	NM_001363	1736	Hs.4747	NM_001363	ENSG00000130826	DKC1	CBF5|DKC|DKCX|NAP57|NOLA4|XAP101	dyskerin pseudouridine synthase 1	protein-coding	4.913	2.511	3.533	5.074	5.209	2.343	2.753	0.803	0.036	1.147	0.572	2.311	6.933	1.503	0.082	5.121	5.246	2.677	4.093	6.959	6.423	7.106	2.539	10.008	9.745	2.631	3.643	5.944	7.887	11.975	16.091	3.600	6.199	6.059	5.193	4.981	5.891	3.272	1.933	3.504	4.476	1.525	2.059	2.753	2.311	1.418	1.454	3.780	2.304
7388	chr7	95743422	95784118	+	0	NA	intron (NR_027662, intron 13 of 16)	intron (NR_027662, intron 13 of 16)	85298	NR_030322	693176		NR_030322	ENSG00000208025	MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA	nan	0.778	nan	0.187	1.160	0.592	0.557	0.152	0.072	0.705	0.569	1.314	1.297	0.085	0.168	0.949	1.201	7.457	7.950	0.435	0.537	2.537	0.665	0.357	0.296	0.596	0.832	0.268	0.245	0.391	0.191	0.703	1.101	2.155	2.801	0.305	nan	1.967	0.960	0.241	0.123	0.975	0.217	0.557	1.314	0.052	0.043	0.650	0.074
1328	chr11	16990618	17011794	+	0	NA	intron (NM_001329631, intron 3 of 22)	intron (NM_001329631, intron 3 of 22)	34757	NM_001329630	144100	Hs.12332	NM_175058	ENSG00000166689	PLEKHA7	-	pleckstrin homology domain containing A7	protein-coding	1.169	nan	1.310	0.821	0.557	0.206	0.526	0.085	0.107	0.173	0.155	0.668	1.027	0.075	0.073	nan	2.291	3.162	8.159	0.909	0.971	0.761	0.385	0.854	0.888	0.546	nan	1.735	1.635	0.431	0.317	1.188	2.030	0.303	0.363	0.880	2.624	1.009	nan	0.607	1.088	0.068	0.250	0.526	0.668	0.028	0.010	0.830	0.583
3097	chr16	28301011	28310784	+	0	NA	intron (NM_001024401, intron 1 of 3)	intron (NM_001024401, intron 1 of 3)	2057	NM_001024401	388228	Hs.97837	NM_001024401	ENSG00000188322	SBK1	SBK	SH3 domain binding kinase 1	protein-coding	2.829	1.840	nan	4.079	3.437	2.099	2.614	0.070	0.098	1.860	0.981	3.976	7.073	1.029	0.075	2.952	3.449	1.605	2.007	6.154	4.870	nan	2.775	6.182	6.216	1.704	2.668	10.116	13.359	2.943	3.540	1.828	3.886	2.772	1.775	2.362	3.299	3.061	1.797	3.232	2.591	0.508	0.967	2.614	3.976	1.073	2.512	1.296	0.974
3767	chr18	42414587	42439458	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	123109	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA	nan	0.990	1.428	0.468	0.613	0.445	0.986	0.215	0.039	0.540	0.444	0.699	2.825	0.031	0.063	0.688	0.696	0.607	0.592	1.573	1.376	1.519	0.476	0.054	0.078	0.912	1.420	0.569	0.546	1.261	1.139	0.208	0.328	2.048	2.710	0.475	nan	4.251	2.270	3.868	0.190	0.691	0.172	0.986	0.699	0.232	0.411	0.079	0.480
409	chr1	95328575	95334754	+	0	NA	intron (NM_001258340, intron 11 of 14)	intron (NM_001258340, intron 11 of 14)	45564	NM_152369	126969	Hs.483423	NM_152369	ENSG00000143036	SLC44A3	CTL3	solute carrier family 44 member 3	protein-coding	nan	nan	1.833	0.167	0.308	0.208	0.498	4.220	0.340	0.228	0.164	0.653	1.184	0.035	0.123	6.678	6.266	8.551	3.884	0.763	nan	1.997	0.833	1.321	1.330	1.788	nan	0.770	0.741	nan	0.277	0.909	1.361	0.287	0.231	0.382	0.775	0.990	0.693	0.251	0.688	0.029	1.962	0.498	0.653	0.032	0.146	0.514	0.165
4049	chr19	39137316	39163066	+	0	NA	intron (NM_001322033, intron 1 of 20)	intron (NM_001322033, intron 1 of 20)	11935	NM_004924	81	Hs.270291	NM_004924	ENSG00000130402	ACTN4	ACTININ-4|FSGS|FSGS1	actinin alpha 4	protein-coding	2.413	1.642	3.422	2.618	0.846	0.460	0.681	2.566	0.754	0.646	0.350	1.321	5.665	0.649	0.152	0.862	1.028	2.215	5.660	1.232	1.636	1.408	0.428	2.092	2.155	1.811	2.779	2.257	2.808	nan	2.389	1.118	1.916	1.155	1.901	1.487	3.231	1.609	1.022	0.769	0.384	0.391	0.535	0.681	1.321	0.550	1.135	0.704	1.230
5353	chr3	32440123	32456556	+	0	NA	intron (NM_138410, intron 1 of 4)	LTR16A1|LTR|ERVL	15176	NM_181472	112616	Hs.440494	NM_138410	ENSG00000153551	CMTM7	CKLFSF7	CKLF like MARVEL transmembrane domain containing 7	protein-coding	1.345	3.690	4.509	0.565	0.853	0.420	0.263	0.215	0.108	0.822	0.536	0.457	2.113	0.401	0.101	1.233	1.342	0.726	1.268	0.772	0.712	1.031	0.277	0.501	0.674	0.698	nan	4.207	3.818	2.533	3.124	0.706	0.639	0.421	0.352	1.044	1.470	1.741	1.141	0.443	0.071	0.053	2.339	0.263	0.457	0.297	1.085	0.150	0.523
7858	chr8	105283012	105293645	+	0	NA	Intergenic	LOR1-int|LTR|ERV1	52765	NM_001282882	9699	Hs.655271	NM_014677	ENSG00000176406	RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding	0.977	nan	nan	0.898	0.676	0.379	0.118	0.146	0.075	0.050	0.113	0.405	4.164	0.030	0.087	0.252	0.198	0.268	0.371	0.861	0.875	nan	0.234	0.718	0.637	0.223	nan	6.765	8.156	nan	0.121	0.210	0.263	0.111	0.110	0.231	nan	0.494	0.539	6.785	1.287	0.027	0.222	0.118	0.405	0.009	0.020	0.055	0.058
7137	chr7	4749869	4754564	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	30286	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding	1.374	2.136	0.917	1.072	0.621	0.478	1.112	0.623	0.317	0.200	0.230	0.944	nan	0.189	0.178	0.867	1.038	2.078	nan	1.115	0.945	nan	0.170	2.412	2.636	0.575	0.700	nan	6.198	0.314	0.126	0.575	0.626	0.107	0.128	0.236	0.560	0.709	0.382	1.736	0.718	0.062	0.099	1.112	0.944	0.042	5.604	0.684	0.106
1958	chr12	54517865	54543335	+	0	NA	Intergenic	Intergenic	10745	NR_026656	400043	Hs.19193	NR_026656	ENSG00000250742	LOC400043	-	uncharacterized LOC400043	ncRNA	nan	0.783	1.392	0.077	0.252	0.135	0.183	0.258	0.082	0.094	0.110	0.113	0.782	0.115	0.072	nan	3.309	0.786	1.049	0.309	nan	0.295	0.155	2.478	2.445	0.538	nan	0.928	nan	0.961	0.855	1.342	2.186	0.522	0.397	1.343	4.670	0.504	0.554	0.119	0.342	0.170	0.022	0.183	0.113	0.253	0.052	1.346	2.113
812	chr1	204970467	205003819	+	0	NA	3' UTR (NM_001005388, exon 30 of 30)	3' UTR (NM_001005388, exon 30 of 30)	-24922	NM_001346083	6900	Hs.519220	NM_005076	ENSG00000184144	CNTN2	AXT|FAME5|TAG-1|TAX|TAX1	contactin 2	protein-coding	1.880	1.099	2.563	0.099	0.563	0.308	0.456	0.092	0.087	0.268	0.284	0.219	0.960	0.069	0.069	0.579	0.676	0.334	0.511	0.908	1.055	0.481	0.205	nan	nan	1.732	2.547	0.544	0.739	1.299	1.466	0.186	0.288	0.543	0.609	1.390	6.472	0.924	0.650	0.290	0.320	0.212	0.446	0.456	0.219	0.601	0.131	0.052	0.993
8275	chr9	128639084	128683624	+	0	NA	intron (NR_024123, intron 2 of 6)	intron (NR_024123, intron 2 of 6)	150876	NM_001134778	5090	Hs.428027	NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding	nan	nan	1.003	1.430	1.421	0.702	0.388	0.371	0.102	1.049	0.766	0.693	nan	0.149	0.084	0.311	0.240	0.361	0.465	0.862	1.064	2.100	0.897	0.342	0.331	0.933	nan	1.692	2.354	2.581	1.862	0.164	0.230	2.362	3.012	1.241	2.101	nan	0.769	0.281	0.431	0.396	0.263	0.388	0.693	0.188	1.563	0.047	0.693
585	chr1	156115544	156153602	+	0	NA	intron (NM_001193302, intron 8 of 12)	HAL1|LINE|L1	11204	NM_001193302	64218	Hs.408846	NM_022367	ENSG00000196189	SEMA4A	CORD10|RP35|SEMAB|SEMB	semaphorin 4A	protein-coding	nan	nan	1.578	0.132	0.323	0.173	0.602	0.288	0.185	0.170	0.171	0.258	1.803	0.142	0.116	1.012	1.543	0.641	0.885	0.783	nan	0.854	0.283	0.240	0.291	0.376	0.708	0.828	1.166	0.694	0.418	0.922	0.990	0.180	0.234	2.153	4.254	0.632	0.515	0.124	0.383	0.030	0.090	0.602	0.258	0.067	0.150	0.192	1.641
3711	chr18	30014882	30031150	+	0	NA	intron (NM_022751, intron 1 of 5)	intron (NM_022751, intron 1 of 5)	27431	NM_022751	64762	Hs.444314	NM_022751	ENSG00000141441	GAREM1	C18orf11|FAM59A|GAREM|Gm944	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	nan	1.040	1.327	0.271	3.596	2.085	0.360	0.125	0.069	0.303	0.277	0.174	0.610	0.033	0.070	0.419	0.270	0.242	0.409	0.423	0.632	3.350	0.944	0.173	0.176	0.408	0.646	nan	0.885	0.568	0.317	0.248	0.584	7.144	10.874	0.628	1.507	1.310	1.312	0.072	0.229	2.397	0.127	0.360	0.174	0.220	0.097	0.535	0.978
4633	chr2	182905859	182924770	+	0	NA	intron (NM_001080545, intron 2 of 4)	intron (NM_001080545, intron 2 of 4)	64763	NM_001261425	151242	Hs.10941	NM_001080545	ENSG00000150722	PPP1R1C	IPP5	protein phosphatase 1 regulatory inhibitor subunit 1C	protein-coding	1.048	0.906	0.825	0.116	0.470	0.237	0.231	1.141	0.120	0.157	0.203	0.127	0.277	0.034	0.088	0.328	0.196	0.175	0.232	0.246	0.283	0.451	0.115	0.342	0.382	nan	5.299	0.546	0.551	0.486	0.197	0.135	0.207	0.245	0.240	0.423	nan	0.464	0.375	0.395	0.054	0.020	0.076	0.231	0.127	0.031	0.070	0.041	0.131
732	chr1	186616209	186623175	+	0	NA	Intergenic	Intergenic	29867	NM_000963	5743	Hs.196384	NM_000963	ENSG00000073756	PTGS2	COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2	prostaglandin-endoperoxide synthase 2	protein-coding	nan	nan	0.983	0.130	0.187	0.070	0.278	0.147	0.138	0.157	0.111	0.069	0.325	0.108	0.133	0.883	0.666	2.369	0.881	0.356	nan	0.160	0.026	16.404	17.347	0.354	0.664	0.227	0.220	0.336	0.140	0.496	0.863	0.109	0.108	0.331	nan	0.554	0.539	0.032	0.103	0.042	0.046	0.278	0.069	0.070	0.044	0.294	0.053
5480	chr3	114979383	114992093	+	0	NA	Intergenic	Intergenic	-119611	NM_015642	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding	0.996	nan	0.661	0.132	0.512	0.152	1.526	0.152	0.090	0.273	0.214	0.113	0.421	0.051	0.104	0.376	0.244	0.213	0.258	0.352	nan	8.591	6.275	0.282	0.269	nan	0.947	0.255	0.252	0.631	0.269	0.106	0.098	0.099	0.188	0.404	0.825	0.772	0.731	0.113	0.161	0.022	0.056	1.526	0.113	0.023	0.810	0.023	0.187
6906	chr6	111794904	111807923	+	0	NA	intron (NM_001286432, intron 2 of 33)	intron (NM_001286432, intron 2 of 33)	-3262	NR_034109	643749	Hs.486228	NR_034108	ENSG00000231889	TRAF3IP2-AS1	C6UAS|C6orf3|NCRNA00248|TRAF3IP2-AS2	TRAF3IP2 antisense RNA 1	ncRNA	nan	3.715	nan	4.987	5.496	2.822	4.801	2.355	0.222	1.939	1.010	5.659	14.572	3.385	0.136	4.751	5.479	4.268	7.462	11.359	nan	nan	3.192	10.039	10.508	2.735	nan	2.129	4.101	6.474	6.816	3.479	6.214	3.903	4.231	5.922	nan	2.181	1.044	4.972	5.821	1.007	2.098	4.801	5.659	1.257	2.094	2.422	1.820
8023	chr9	3872529	4001246	+	0	NA	intron (NM_001042413, intron 5 of 10)	intron (NM_001042413, intron 5 of 10)	38241	NR_026663	84850	Hs.676113	NM_032764	ENSG00000237009	GLIS3-AS1	C9orf70	GLIS3 antisense RNA 1	ncRNA	0.820	1.910	0.742	0.229	0.404	0.180	0.293	0.392	0.095	0.281	0.178	0.198	0.702	0.113	0.084	0.341	0.361	7.367	12.743	0.462	0.556	0.168	0.111	0.266	0.277	1.070	1.658	0.549	0.754	0.841	0.646	0.376	0.684	0.578	0.534	0.248	nan	1.313	1.082	0.229	0.279	0.126	0.119	0.293	0.198	0.182	0.171	0.262	0.083
4653	chr2	193175112	193180174	+	0	NA	Intergenic	Intergenic	-117984	NM_001305145	23671	Hs.144513	NM_016192	ENSG00000144339	TMEFF2	CT120.2|HPP1|TENB2|TPEF|TR|TR-2	transmembrane protein with EGF like and two follistatin like domains 2	protein-coding	0.516	nan	0.705	0.017	0.255	0.044	0.000	0.073	0.280	0.032	0.112	0.024	0.139	0.021	0.075	0.736	0.318	8.430	6.285	0.194	0.197	0.155	0.085	0.437	0.702	0.268	0.450	0.303	0.301	0.384	0.085	0.237	0.209	0.009	0.051	0.240	0.396	0.331	0.140		0.062	0.038	0.016	0.000	0.024	0.020	0.060		0.024
6831	chr6	58773148	58780357	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-489028	NR_132996	106660612	Hs.561539	NR_125727	ENSG00000215190	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA	37.036	34.894	nan	23.836	43.776	28.673	18.046	40.068	74.892	22.826	28.307	28.564	57.093	18.783	30.995	37.280	21.598	30.345	40.440	40.862	46.006	13.885	11.690	28.540	28.949	25.185	30.142	30.260	26.094	49.832	24.174	17.700	27.855	14.445	20.138	23.847	28.778	16.588	22.110	6.768	15.410	6.565	11.462	18.046	28.564	3.801	7.636	9.931	10.232
6961	chr6	128829088	128843587	+	0	NA	intron (NM_001135648, intron 1 of 30)	intron (NM_001135648, intron 1 of 30)	5482	NM_001291983	5796	Hs.155919	NM_002844	ENSG00000152894	PTPRK	R-PTP-kappa	protein tyrosine phosphatase, receptor type K	protein-coding	2.894	0.950	2.935	0.634	0.997	0.520	0.952	1.536	0.101	0.227	0.180	0.214	0.484	0.576	0.100	1.679	1.347	2.620	4.633	1.349	0.881	3.532	1.216	4.165	4.184	2.508	2.905	1.695	3.317	4.707	5.383	0.151	0.368	3.834	4.396	0.739	0.817	0.860	0.624	0.249	0.160	1.028	0.770	0.952	0.214	0.722	0.071	0.047	0.366
2381	chr13	95246145	95270761	+	0	NA	intron (NM_180989, intron 2 of 8)	AluSx|SINE|Alu	4349	NM_180989	160897	Hs.439363	NM_180989	ENSG00000152749	GPR180	ITR	G protein-coupled receptor 180	protein-coding	1.724	1.800	1.618	0.563	1.087	0.494	1.296	0.469	0.091	0.363	0.271	0.729	2.017	0.640	0.114	1.551	1.908	1.016	1.462	1.402	1.337	2.372	0.763	0.675	0.629	0.503	0.790	1.445	1.844	1.592	1.552	0.962	1.725	1.224	1.303	3.125	7.018	0.503	0.215	1.503	1.074	0.264	1.101	1.296	0.729	0.303	0.569	0.548	2.299
1416	chr11	47934096	47951075	+	0	NA	Intergenic	AluSg|SINE|Alu	-59525	NM_001098503	5795	Hs.318547	NM_002843	ENSG00000149177	PTPRJ	CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1	protein tyrosine phosphatase, receptor type J	protein-coding	nan	2.931	1.039	0.199	0.960	0.509	0.836	0.671	0.303	0.250	0.207	0.655	2.499	0.062	0.125	1.214	1.926	0.366	0.638	1.476	1.378	0.889	0.227	0.445	0.570	1.008	1.527	2.120	2.092	1.132	1.147	0.364	0.429	0.495	0.390	0.362	nan	1.085	0.860	6.394	3.413	0.096	0.088	0.836	0.655	0.851	0.083	0.099	0.350
2771	chr14	101174107	101195744	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-8277	NM_003836	8788	Hs.116631	NM_003836	ENSG00000185559	DLK1	DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2	delta like non-canonical Notch ligand 1	protein-coding	1.399	1.117	0.644	0.106	0.715	0.394	0.665	0.106	0.052	0.064	0.130	0.395	1.967	0.077	0.104	0.190	0.092	0.157	0.194	1.187	1.134	0.806	0.386	0.073	0.075	0.129	0.256	0.873	1.223	3.968	4.182	0.232	0.279	0.997	0.835	0.315	0.676	1.102	0.641	1.189	0.404	0.247	3.272	0.665	0.395	1.247	2.330	0.055	0.091
1658	chr11	114090161	114116473	+	0	NA	intron (NM_001018011, intron 4 of 6)	(GGCTG)n|Simple_repeat|Simple_repeat	-63218	NM_006169	4837	Hs.503911	NM_006169	ENSG00000166741	NNMT	-	nicotinamide N-methyltransferase	protein-coding	0.947	0.839	0.716	0.207	0.301	0.128	0.289	0.045	0.049	0.149	0.135	0.141	0.300	0.021	0.108	0.733	nan	0.111	0.131	0.619	0.656	0.683	0.179	0.147	0.148	0.400	nan	0.429	0.471	1.040	1.062	0.575	0.844	0.758	0.694	1.071	3.568	0.867	0.669	0.042	0.139	0.221	0.161	0.289	0.141	0.059	0.073	0.200	0.697
1635	chr11	111748023	111751203	+	0	NA	promoter-TSS (NM_022761)	promoter-TSS (NM_022761)	-335	NM_001330371	64776	Hs.17546	NM_022761	ENSG00000137720	C11orf1	-	chromosome 11 open reading frame 1	protein-coding	3.233	3.331	3.058	4.870	5.754	2.778	3.781	0.735	0.100	2.630	1.410	6.734	10.417	3.900	0.114	21.131	21.868	8.848	12.735	10.221	8.682	11.705	6.672	15.289	16.604	6.294	7.663	8.298	11.641	8.494	8.983	9.083	10.321	9.499	8.746	4.840	5.634	5.360	3.223	5.229	3.480	1.698	3.042	3.781	6.734	1.934	2.489	5.427	1.943
1237	chr10	123813012	123831112	+	0	NA	intron (NM_206861, intron 3 of 19)	AluSp|SINE|Alu	-50492	NM_001291879	10579	Hs.501252	NM_006997	ENSG00000138162	TACC2	AZU-1|ECTACC	transforming acidic coiled-coil containing protein 2	protein-coding	nan	1.136	0.965	0.262	0.611	0.340	0.135	0.569	0.150	0.180	0.060	0.376	0.509	0.096	0.088	0.210	0.205	0.348	0.575	0.255	0.217	0.866	0.328	0.196	0.239	0.355	0.652	1.757	1.959	0.226	0.176	0.233	0.204	0.251	0.424	0.494	1.172	0.951	0.566	0.065	0.250	0.052	0.066	0.135	0.376	0.065	1.605	0.016	0.245
6937	chr6	123137214	123147228	+	0	NA	Intergenic	Intergenic	32027	NM_006714	10924	Hs.486357	NM_006714	ENSG00000172594	SMPDL3A	ASM3A|ASML3a|yR36GH4.1	sphingomyelin phosphodiesterase acid like 3A	protein-coding	1.262	1.393	1.196	0.319	5.190	2.905	0.307	0.132	0.016	0.563	0.373	0.911	0.913	0.098	0.138	0.317	0.199	0.233	0.303	1.544	1.246	7.710	2.980	0.364	0.274	0.426	0.465	0.615	0.855	0.654	0.382	0.328	0.475	5.476	5.795	0.811	2.314	0.708	0.402	0.218	0.426	1.587	0.205	0.307	0.911	0.039	0.244	0.504	0.530
5315	chr22	50741622	50766384	+	0	NA	intron (NM_001001794, intron 9 of 19)	(CA)n|Simple_repeat|Simple_repeat	-8002	NM_012401	23654	Hs.3989	NM_012401	ENSG00000196576	PLXNB2	MM1|Nbla00445|PLEXB2|dJ402G11.3	plexin B2	protein-coding	1.979	1.477	nan	0.776	1.574	0.901	2.447	0.852	0.190	0.379	0.250	2.046	2.116	1.836	0.086	1.109	1.916	1.455	2.902	2.072	1.948	1.490	0.603	1.489	1.565	1.301	2.075	3.490	4.682	1.944	1.894	0.711	1.226	1.397	1.579	0.746	0.777	1.452	0.897	1.164	0.520	0.476	0.436	2.447	2.046	0.445	2.636	0.454	0.163
5691	chr3	176618415	176640353	+	0	NA	Intergenic	Intergenic	-94595	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA	1.410	2.453	1.196	2.468	1.065	0.628	0.418	0.558	0.154	0.703	0.312	0.792	3.736	0.047	0.143	0.452	0.287	2.165	5.868	0.873	0.827	3.290	1.671	0.285	0.305	0.735	0.988	4.378	3.894	0.652	0.250	0.188	0.296	1.812	1.997	0.411	0.783	1.382	0.747	1.891	0.469	0.390	0.188	0.418	0.792	0.084	0.717	0.056	0.112
2490	chr14	23788327	23793427	+	0	NA	exon (NM_004643, exon 1 of 7)	exon (NM_004643, exon 1 of 7)	1480	NM_004643	8106	Hs.707712	NM_004643	ENSG00000100836	PABPN1	OPMD|PAB2|PABII|PABP-2|PABP2	poly(A) binding protein nuclear 1	protein-coding	9.867	3.686	5.958	6.310	3.841	2.322	4.543	3.243	0.199	1.945	1.147	5.183	7.108	3.506	0.127	3.813	3.250	5.953	7.843	6.228	6.342	7.176	3.960	11.368	11.091	4.219	5.603	6.433	nan	12.179	10.775	3.304	6.213	6.018	7.156	17.793	16.113	2.807	1.311	4.141	3.602	0.921	2.330	4.543	5.183	1.953	3.434	1.181	8.191
7823	chr8	98624408	98668512	+	0	NA	Intergenic	AluJb|SINE|Alu	-9947	NM_178812	92140	Hs.377155	NM_178812	ENSG00000147649	MTDH	3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3	metadherin	protein-coding	nan	1.099	2.128	0.908	1.067	0.588	0.595	0.969	0.238	0.356	0.219	1.066	2.066	0.310	0.103	0.629	0.672	0.946	nan	1.810	1.640	2.245	0.973	2.168	2.134	9.916	11.580	2.482	3.054	1.534	1.310	0.718	1.397	0.977	1.072	1.155	1.329	1.022	0.774	0.405	0.594	0.188	0.351	0.595	1.066	0.101	0.592	0.353	0.294
5000	chr20	50547090	50591718	+	0	NA	Intergenic	Intergenic	-89952	NR_110016	101927678	Hs.683840	NR_110016	ENSG00000227964	LINC01429	-	long intergenic non-protein coding RNA 1429	ncRNA	1.153	1.055	0.782	0.128	0.271	0.176	0.266	0.284	0.231	0.162	0.160	0.231	0.337	3.951	0.239	1.018	nan	0.370	0.375	0.278	0.286	1.344	0.352	0.344	0.390	0.485	0.848	0.266	0.364	0.616	0.310	0.302	0.464	0.780	0.906	0.505	1.671	0.378	0.437	0.035	0.092	0.246	0.371	0.266	0.231	0.250	0.173	0.117	0.155
3991	chr19	18051964	18064110	+	0	NA	Intergenic	Intergenic	-4074	NM_002248	3780	Hs.158173	NM_002248	ENSG00000105642	KCNN1	KCa2.1|SK1|SKCA1|hSK1	potassium calcium-activated channel subfamily N member 1	protein-coding	2.553	1.375	1.675	0.730	3.637	1.850	1.694	0.202	0.080	0.323	0.252	2.795	2.226	0.502	0.094	0.974	1.086	0.456	0.656	7.382	5.903	1.983	0.680	0.479	0.460	1.305	1.687	1.943	3.887	4.035	3.697	0.319	0.399	2.747	2.131	4.072	6.061	1.341	0.767	4.197	2.158	0.558	1.058	1.694	2.795	2.204	0.223	0.138	2.796
4929	chr20	32250332	32263644	+	0	NA	TTS (NM_001024675)	TTS (NM_001024675)	2684	NM_001024675	170487	Hs.592151	NM_001024675	ENSG00000182584	ACTL10	C20orf134|dJ63M2.2	actin like 10	protein-coding	2.486	4.982	3.214	5.303	3.075	1.588	1.703	1.640	0.229	1.486	0.774	4.587	7.608	2.206	0.095	4.514	6.371	1.739	2.796	3.499	nan	6.675	1.962	3.521	3.841	2.240	3.205	5.931	6.306	2.987	2.886	1.819	3.282	1.388	1.410	1.950	nan	0.995	0.502	2.257	2.987	0.400	0.647	1.703	4.587	0.488	1.917	0.922	1.183
5194	chr22	21126564	21152548	+	0	NA	intron (NM_000185, intron 3 of 4)	AluJr|SINE|Alu	11173	NM_000185	3053	Hs.474270	NM_000185	ENSG00000099937	SERPIND1	D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10	serpin family D member 1	protein-coding	0.775	nan	0.856	0.378	0.437	0.216	0.354	0.181	0.055	0.423	0.208	0.321	0.547	0.058	0.075	0.546	0.806	0.487	0.783	0.424	0.534	1.106	0.469	1.075	1.061	0.459	0.823	1.351	0.965	0.545	0.437	0.207	0.375	0.073	0.102	0.335	1.009	3.445	1.678	0.156	0.355	0.018	0.080	0.354	0.321	0.059	0.323	0.076	0.163
7528	chr7	147737403	147758612	+	0	NA	intron (NM_014141, intron 15 of 23)	Tigger3b|DNA|TcMar-Tigger	121322	NR_036093	100422849		NR_036093	ENSG00000221296	MIR548T	-	microRNA 548t	ncRNA	1.090	2.249	1.896	3.331	1.684	0.825	0.843	0.092	0.060	2.798	1.793	6.238	5.361	0.067	0.145	0.498	0.397	0.322	1.005	5.081	4.500	2.563	1.164	0.116	0.129	0.739	0.915	3.219	4.337	0.454	0.217	0.187	0.233	4.875	4.096	0.350	0.752	2.884	nan	1.059	0.395	1.124	0.235	0.843	6.238	0.332	1.202	0.051	0.076
6683	chr6	26532851	26540296	+	0	NA	Intergenic	Intergenic	-1999	NM_006353	10473	Hs.236774	NM_006353	ENSG00000182952	HMGN4	HMG17L3|NHC	high mobility group nucleosomal binding domain 4	protein-coding	5.262	2.644	nan	3.746	3.255	1.487	3.246	3.004	0.611	1.412	0.994	3.584	nan	5.708	0.218	3.776	5.971	2.914	nan	5.904	4.876	7.308	2.026	8.087	8.268	4.610	5.689	6.051	7.072	7.445	7.633	2.160	3.620	4.290	4.272	7.157	10.010	2.448	1.234	1.045	2.775	0.643	2.206	3.246	3.584	0.673	2.195	1.836	3.838
8382	chrX	41189370	41195875	+	0	NA	promoter-TSS (NR_126093)	promoter-TSS (NR_126093)	61	NM_001356	1654	Hs.728563	NM_001356	ENSG00000215301	DDX3X	CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102	DEAD-box helicase 3, X-linked	protein-coding	5.470	5.762	nan	6.332	4.779	2.396	2.693	4.010	0.273	3.284	1.351	4.471	10.696	5.094	0.140	4.651	5.660	14.256	17.543	11.000	10.300	9.815	6.921	19.212	19.893	3.290	4.021	9.570	14.608	11.188	12.346	8.816	11.350	6.448	5.882	10.293	7.739	2.568	1.850	2.998	4.636	0.806	3.263	2.693	4.471	0.747	2.310	5.595	2.627
1332	chr11	18081403	18095710	+	0	NA	Intergenic	Arthur1A|DNA|hAT-Tip100	-26221	NM_004179	7166	Hs.591999	NM_004179	ENSG00000129167	TPH1	TPRH|TRPH	tryptophan hydroxylase 1	protein-coding	1.227	nan	2.872	3.596	1.226	0.506	0.135	0.100	0.067	2.139	0.750	0.536	0.987	0.030	0.110	nan	0.383	0.282	0.309	0.975	1.051	4.565	1.799	0.263	0.267	0.443	nan	2.345	3.575	1.945	1.777	0.216	0.335	7.997	9.203	1.393	5.056	5.130	nan	0.436	1.098	2.480	0.033	0.135	0.536		2.747	0.076	1.560
5156	chr21	45230116	45236575	+	0	NA	promoter-TSS (NR_026961)	promoter-TSS (NR_026961)	-897	NR_026961	284837	Hs.592159	NM_194310	ENSG00000215458	AATBC	-	apoptosis associated transcript in bladder cancer	ncRNA	nan	2.750	3.035	0.558	0.701	0.496	0.653	0.105	0.168	0.171	0.114	0.771	11.274	0.066	0.032	0.678	0.997	0.508	0.721	1.681	1.338	nan	0.222	0.456	0.381	0.765	nan	1.922	3.600	1.235	1.345	1.015	0.893	2.618	2.112	0.438	1.091	2.557	1.232	7.040	1.278	0.506	0.232	0.653	0.771	2.386	0.316	0.214	0.250
5409	chr3	77568943	77585889	+	0	NA	intron (NM_001290040, intron 7 of 27)	intron (NM_001290040, intron 7 of 27)	430253	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding	0.947	0.634	0.636	0.133	1.114	0.474	0.038	0.334	0.048	0.082	0.174	0.091	0.198	0.051	0.085	0.175	0.139	0.219	nan	0.440	0.897	0.447	0.153	0.084	0.084	5.143	5.032	0.861	0.716	0.917	0.622	0.098	0.109	0.568	0.596	0.244	nan	0.514	0.410	0.587	0.099	0.252	0.230	0.038	0.091	0.235	0.096	0.023	0.101
6389	chr5	102081753	102101036	+	0	NA	intron (NM_001319943, intron 1 of 26)	intron (NM_001319943, intron 1 of 26)	907	NM_001319943	5066	Hs.369430	NM_000919	ENSG00000145730	PAM	PAL|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding	1.685	4.426	1.145	3.143	1.898	0.998	0.970	0.781	0.117	0.351	0.190	0.664	8.609	0.450	0.097	1.752	1.892	3.491	7.940	1.450	1.176	2.209	0.835	0.649	0.747	2.740	3.516	2.266	3.832	0.898	1.211	1.053	3.170	4.420	3.933	0.554	1.036	2.017	1.095	1.808	0.919	1.183	0.559	0.970	0.664	0.216	1.094	0.871	0.371
7287	chr7	55111095	55182195	+	0	NA	intron (NM_001346941, intron 1 of 21)	intron (NM_001346941, intron 1 of 21)	-30865	NM_001346900	1956	Hs.488293	NM_005228	ENSG00000146648	EGFR	ERBB|ERBB1|HER1|NISBD2|PIG61|mENA	epidermal growth factor receptor	protein-coding	nan	1.326	1.609	0.084	0.626	0.264	0.425	1.606	0.129	0.117	0.098	0.264	1.076	3.631	0.195	0.367	0.205	3.388	2.363	0.859	0.872	0.107	0.069	0.064	0.056	0.165	0.277	0.903	0.844	0.413	0.301	0.111	0.161	0.128	0.189	0.125	0.181	0.707	0.594	0.946	0.146	0.033	0.039	0.425	0.264	0.076	0.575	0.015	0.070
6464	chr5	138378643	138399076	+	0	NA	intron (NM_001037633, intron 4 of 10)	intron (NM_001037633, intron 4 of 10)	145206	NM_022464	64374	Hs.483521	NM_022464	ENSG00000120725	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding	1.074	2.147	nan	0.340	0.430	0.283	0.287	0.245	0.079	0.085	0.077	0.422	1.340	0.053	0.106	0.199	0.255	0.357	0.481	0.471	0.606	0.710	0.294	0.283	0.370	1.069	1.481	1.538	1.547	0.683	0.535	0.517	1.127	0.729	0.880	1.015	4.348	0.558	0.412	1.050	0.704	0.248	0.172	0.287	0.422	0.231	0.134	0.820	0.875
1117	chr10	58769948	58780282	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	289204	NR_037490	100500834		NR_037490	ENSG00000264747	MIR3924	-	microRNA 3924	ncRNA	0.416	nan	0.946	0.473	0.261	0.047	0.261	0.043	0.047	0.275	0.103	0.081	1.307	0.059	0.063	0.842	0.639	2.276	0.952	0.100	0.188	9.466	1.366	0.227	0.243	0.077	0.111	2.546	1.812	0.214	0.166	0.147	0.162	1.067	1.318	0.152	0.198	0.981	0.555	0.630	0.061	0.266	0.016	0.261	0.081		0.404	0.057	0.033
740	chr1	187621547	187626495	+	0	NA	Intergenic	Intergenic	211261	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA	nan	nan	0.913	0.142	0.161	0.098	0.155	0.180	0.098	0.191	0.158	0.120	0.428	0.043	0.116	0.516	0.261	10.516	8.304	0.410	nan	0.370	0.122	nan	0.458	0.710	1.210	0.416	0.230		0.010	0.224	0.387	0.136	0.145	0.341	nan	0.377	0.243	0.045	0.103		0.097	0.155	0.120	0.035		0.087	0.097
3434	chr17	46017364	46039572	+	0	NA	TTS (NM_024320)	TTS (NM_024320)	6775	NM_024320	79170	Hs.368260	NM_024320	ENSG00000167183	PRR15L	ATAD4	proline rich 15 like	protein-coding	1.313	2.672	nan	1.973	3.026	1.574	0.785	0.324	0.119	2.065	1.282	3.669	5.393	0.318	0.106	1.556	2.331	0.892	1.465	3.095	nan	4.436	1.282	3.266	3.598	0.906	1.439	7.930	nan	1.167	0.862	1.696	3.230	4.917	4.657	0.818	1.456	2.857	1.381	3.548	4.121	2.113	2.293	0.785	3.669	0.463	0.586	2.452	0.416
871	chr1	218503480	218524873	+	0	NA	Intergenic	Intergenic	-4450	NR_138148	7042	Hs.133379	NM_003238	ENSG00000092969	TGFB2	G-TSF|LDS4|TGF-beta2	transforming growth factor beta 2	protein-coding	1.777	1.118	1.426	1.253	0.848	0.425	0.622	1.846	0.279	0.836	0.416	0.191	nan	0.197	0.114	0.603	0.634	0.845	2.915	1.029	0.932	nan	0.565	0.688	0.600	0.388	nan	1.343	1.197	0.577	0.466	0.146	0.257	3.015	3.119	0.515	0.844	0.984	0.694	0.031	0.117	0.791	0.104	0.622	0.191	0.055	0.337	0.051	0.156
5374	chr3	52488031	52509804	+	0	NA	intron (NM_001276294, intron 3 of 13)	AluSx|SINE|Alu	9393	NM_007184	11188	Hs.435290	NM_007184	ENSG00000010322	NISCH	I-1|IR1|IRAS|hIRAS	nischarin	protein-coding	1.778	1.209	nan	0.521	0.395	0.266	0.388	0.487	0.074	0.247	0.227	0.522	1.161	0.639	0.115	0.685	0.902	1.173	1.517	1.316	1.410	1.349	0.481	0.753	0.816	0.965	1.320	1.442	1.619	nan	3.498	1.216	2.223	0.501	0.548	1.780	5.789	0.722	0.419	0.622	0.486	0.141	0.542	0.388	0.522	0.293	0.423	1.567	2.627
2039	chr12	79716127	79730424	+	0	NA	intron (NM_001291901, intron 7 of 9)	intron (NM_001291901, intron 7 of 9)	-89762	NR_031700	100302136		NR_031700	ENSG00000221788	MIR1252	MIRN1252|hsa-mir-1252	microRNA 1252	ncRNA	nan	0.929	0.661	0.121	0.400	0.336	0.360	0.157	0.203	0.326	0.309	0.268	0.551	0.023	0.096	0.283	0.219	0.289	0.193	0.827	1.051	0.593	0.212	0.323	0.384	3.602	3.790	nan	0.949	0.478	0.270	0.134	0.246	0.073	0.073	0.298	0.586	nan	0.960	0.311	0.590	0.020	0.065	0.360	0.268	0.034	0.106	0.049	0.068
5725	chr3	181655325	181667108	+	0	NA	Intergenic	Intergenic	-8936	NR_104146	100996490	Hs.606987	NR_104146	ENSG00000242512	LINC01206	-	long intergenic non-protein coding RNA 1206	ncRNA	0.995	2.063	1.235	0.150	0.922	0.396	0.333	0.141	0.123	0.347	0.238	0.211	0.885	3.025	0.161	0.323	0.200	0.213	0.486	0.513	0.466	7.626	1.877	0.208	0.149	0.592	1.022	0.550	0.429	0.606	0.264	0.141	0.244	1.306	2.039	0.131	0.188	1.286	0.630	0.070	0.088	0.357	0.324	0.333	0.211	0.108	0.051	0.017	0.084
6212	chr5	23010136	23015746	+	0	NA	Intergenic	Intergenic	-159210	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding	0.736	2.254	4.204	1.342	0.178	0.199	0.410	0.226	0.315	1.729	0.880	0.363	4.744	0.078	0.178	0.369	0.394	1.257	2.047	0.523	0.608	0.132	0.068	0.167	0.122	nan	2.935	1.263	1.289	1.346	0.963	0.254	0.135	7.343	9.158	0.221	0.407	nan	1.371	0.091	0.331	1.555	0.071	0.410	0.363	0.190	2.143	0.036	0.022
3826	chr18	54302582	54307089	+	0	NA	intron (NR_024546, intron 1 of 8)	intron (NR_024546, intron 1 of 8)	1085	NM_004786	9352	Hs.114412	NM_004786	ENSG00000091164	TXNL1	HEL-S-114|TRP32|TXL-1|TXNL|Txl	thioredoxin like 1	protein-coding	nan	2.992	4.390	4.694	3.662	2.120	5.137	1.855	0.102	1.503	0.607	4.428	6.987	2.677	0.125	5.363	5.440	6.260	9.430	9.457	8.747	12.112	6.222	20.706	22.206	2.779	3.522	6.512	9.754	6.643	6.203	3.403	6.431	6.462	7.995	6.021	4.765	nan	3.704	1.660	1.895	1.285	2.134	5.137	4.428	1.030	2.442	2.168	1.920
4042	chr19	37996310	37999533	+	0	NA	promoter-TSS (NR_110723)	promoter-TSS (NR_110723)	68	NR_110723	101927720	Hs.18070	NR_110723		ZNF793-AS1	-	ZNF793 antisense RNA 1 (head to head)	ncRNA	8.553	3.774	0.844	16.645	5.702	3.306	4.941	2.795	0.200	2.719	1.196	8.436	19.495	7.493	0.209	6.136	7.575	4.292	5.552	16.185	14.779	13.087	7.681	26.637	28.485	0.087	0.243	10.885	17.940	nan	10.050	7.271	8.758	8.581	8.710	1.706	2.516	8.148	4.783	6.987	6.316	1.415	2.488	4.941	8.436	2.009	1.471	2.944	0.238
3774	chr18	43675378	43686247	+	0	NA	intron (NM_001001937, intron 1 of 12)	AluSx1|SINE|Alu	-2493	NM_004046	498	Hs.298280	NM_004046	ENSG00000152234	ATP5A1	ATP5A|ATP5AL2|ATPM|COXPD22|HEL-S-123m|MC5DN4|MOM2|OMR|ORM|hATP1	ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle	protein-coding	nan	2.643	2.819	3.858	2.515	1.076	5.145	0.888	0.147	1.330	0.878	3.724	6.205	1.872	0.091	4.428	4.010	3.652	5.052	6.186	5.662	9.188	5.146	3.140	3.121	2.379	3.323	2.687	4.303	5.994	5.882	1.805	2.784	5.337	6.434	4.575	nan	5.622	3.119	2.837	2.186	1.258	1.475	5.145	3.724	0.811	1.628	0.926	2.682
1704	chr11	121403476	121444702	+	0	NA	intron (NM_003105, intron 16 of 47)	intron (NM_003105, intron 16 of 47)	101177	NM_003105	6653	Hs.368592	NM_003105	ENSG00000137642	SORL1	C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250	sortilin related receptor 1	protein-coding	0.781	1.480	0.770	0.421	0.444	0.194	0.169	0.134	0.094	0.241	0.207	0.070	1.023	0.074	0.099	0.428	0.312	0.188	0.252	0.610	0.577	1.448	0.382	0.273	0.263	1.099	1.494	0.150	0.168	1.351	1.193	0.542	0.894	0.488	0.921	0.180	nan	1.117	0.684	3.002	0.573	0.120	0.054	0.169	0.070	0.128	0.183	0.294	0.171
688	chr1	180235767	180272281	+	0	NA	Intergenic	AluJr|SINE|Alu	-10208	NR_037642	100527964	Hs.496545	NR_037642	ENSG00000230124	LHX4-AS1	-	LHX4 antisense RNA 1	ncRNA	nan	nan	1.413	0.174	0.324	0.168	0.267	0.273	0.127	0.159	0.183	0.320	0.379	0.122	0.123	0.577	0.534	0.598	0.706	0.541	nan	0.335	0.180	nan	0.492	0.834	1.094	0.484	0.472	0.747	0.473	0.582	0.702	0.128	0.148	1.129	nan	0.797	0.606	0.052	0.258	0.015	0.141	0.267	0.320	0.072	0.056	0.114	1.199
750	chr1	192593295	192620027	+	0	NA	intron (NM_002927, intron 1 of 6)	intron (NM_002927, intron 1 of 6)	1393	NM_144766	6003	Hs.497220	NM_002927	ENSG00000127074	RGS13	-	regulator of G-protein signaling 13	protein-coding	0.844	nan	0.962	0.063	0.191	0.114	0.130	0.177	0.114	0.194	0.216	0.040	0.294	0.052	0.126	11.656	14.324	12.497	7.271	0.380	0.423	0.154	0.094	17.611	17.986	0.322	nan	0.310	0.240	0.346	0.179	1.684	3.294	0.076	0.070	0.439	0.849	0.351	0.434	0.019	0.070	0.011	0.012	0.130	0.040	0.007	0.057	1.357	0.267
1126	chr10	63626324	63873506	+	0	NA	intron (NM_032199, intron 3 of 9)	intron (NM_032199, intron 3 of 9)	-59055	NM_001244638	84159	Hs.535297	NM_032199	ENSG00000150347	ARID5B	DESRT|MRF-2|MRF2	AT-rich interaction domain 5B	protein-coding	0.790	nan	0.964	0.109	0.808	0.410	0.102	1.688	0.163	0.176	0.153	0.478	0.664	4.780	0.165	0.327	0.234	2.848	5.263	0.465	0.477	0.867	0.448	0.822	0.848	0.532	0.722	0.487	0.521	0.243	0.144	0.139	0.201	0.517	0.660	0.176	nan	0.632	0.463	0.013	0.219	0.135	0.175	0.102	0.478	0.051	0.123	0.052	0.114
6738	chr6	36275325	36318268	+	0	NA	intron (NM_001010903, intron 2 of 11)	intron (NM_001010903, intron 2 of 11)	7866	NM_001010903	389384	Hs.162104	NM_001010903	ENSG00000189325	C6orf222	-	chromosome 6 open reading frame 222	protein-coding	nan	0.933	nan	0.582	0.436	0.194	0.817	0.088	0.067	0.324	0.166	0.645	0.882	0.100	0.107	3.481	4.386	3.494	nan	nan	0.706	1.621	0.534	1.729	1.805	0.225	0.448	2.851	2.860	0.543	0.385	1.399	2.109	0.574	0.800	0.358	0.560	1.675	1.102	0.749	0.801	0.116	0.564	0.817	0.645	0.128	0.827	1.342	0.097
1534	chr11	76836524	76867302	+	0	NA	intron (NM_001127179, intron 2 of 26)	intron (NM_001127179, intron 2 of 26)	12597	NM_001127180	4647	Hs.370421	NM_000260	ENSG00000137474	MYO7A	DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B	myosin VIIA	protein-coding	nan	0.953	1.852	0.512	0.290	0.151	0.201	0.151	0.063	0.193	0.124	0.317	1.450	0.106	0.094	0.733	1.044	0.346	0.375	1.869	1.850	1.889	0.626	1.951	2.119	1.470	2.044	1.029	1.601	2.265	2.570	0.866	0.838	0.878	0.891	0.648	1.069	1.148	0.717	3.871	0.134	0.193	0.778	0.201	0.317	0.628	0.366	0.219	0.358
2570	chr14	39637784	39647006	+	0	NA	Intergenic	AluJr|SINE|Alu	-1992	NM_002687	5411	Hs.409965	NM_002687	ENSG00000100941	PNN	DRS|DRSP|SDK3|memA	pinin, desmosome associated protein	protein-coding	7.693	2.916	nan	5.512	4.560	2.624	2.587	3.928	0.840	1.612	0.974	3.973	8.378	3.904	0.209	2.737	2.707	5.644	7.452	7.535	6.299	7.721	4.060	11.834	13.067	4.788	6.304	7.281	11.491	10.374	10.604	2.847	4.395	6.586	6.821	5.008	4.618	3.802	1.750	4.841	5.100	1.276	2.524	2.587	3.973	1.137	2.538	1.575	1.394
7972	chr8	142603444	142609857	+	0	NA	Intergenic	Intergenic	-89320	NR_102364	389690	Hs.689547	NM_207414	ENSG00000226807	MROH5	-	maestro heat like repeat family member 5	protein-coding	1.058	0.518	nan	0.051	0.220	0.174	0.325	0.059	0.050	0.055	0.039	0.112	0.553	0.017	0.065	0.907	0.561	9.926	7.800	nan	0.868	nan	0.094	0.271	0.297	0.410	0.716	0.389	0.455	0.412	0.298	0.555	0.665	0.092	0.150	0.154	0.222	0.240	0.257	0.111	0.138	0.045	0.085	0.325	0.112	0.091		0.093	
6697	chr6	30649921	30659672	+	0	NA	5' UTR (NM_133471, exon 1 of 3)	5' UTR (NM_133471, exon 1 of 3)	297	NM_001134870	170954	Hs.101150	NM_133471	ENSG00000146112	PPP1R18	HKMT1098|KIAA1949	protein phosphatase 1 regulatory subunit 18	protein-coding	5.443	2.526	nan	1.991	4.420	2.383	2.152	5.265	0.456	1.207	0.356	3.908	9.282	4.368	0.159	3.366	4.079	3.205	nan	nan	4.077	4.713	1.224	5.161	4.916	2.959	4.615	3.368	4.134	3.240	2.508	1.075	2.001	3.186	3.838	2.929	4.716	2.093	0.890	4.404	2.395	0.992	0.767	2.152	3.908	0.650	1.711	0.864	1.468
1915	chr12	32650597	32657401	+	0	NA	promoter-TSS (NM_139241)	promoter-TSS (NM_139241)	-978	NM_001330373	121512	Hs.117835	NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	2.757	nan	3.223	1.090	0.504	0.212	0.686	0.076	0.073	1.100	0.817	1.058	1.149	0.064	0.112	3.949	4.778	1.300	1.570	1.930	1.712	5.542	1.245	0.627	0.602	3.179	3.823	0.830	0.867	2.783	3.429	0.654	1.855	8.506	8.435	3.871	6.612	1.187	0.776	0.068	3.866	1.614	1.704	0.686	1.058	0.370	0.120	0.857	2.482
3729	chr18	32273069	32292911	+	0	NA	intron (NM_001128175, intron 2 of 11)	intron (NM_001128175, intron 2 of 11)	-7206	NM_032978	1837	Hs.643454	NM_001390	ENSG00000134769	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin alpha	protein-coding	nan	1.447	0.759	2.221	0.559	0.243	3.139	0.786	0.065	0.357	0.248	0.576	2.488	0.624	0.105	0.456	0.276	0.891	1.053	1.153	1.210	9.824	4.053	0.167	0.209	0.538	0.921	nan	7.158	0.795	0.448	0.144	0.190	4.061	6.073	0.351	0.804	1.910	1.628	0.076	0.730	0.880	0.309	3.139	0.576	0.265	0.830	0.060	0.094
4523	chr2	142245886	142267785	+	0	NA	intron (NM_018557, intron 2 of 90)	MIR|SINE|MIR	632435	NM_018557	53353	Hs.656461	NM_018557	ENSG00000168702	LRP1B	LRP-1B|LRP-DIT|LRPDIT	LDL receptor related protein 1B	protein-coding	0.900	nan	0.771	0.088	0.224	0.088	0.070	0.041	0.103	0.107	0.087	0.098	0.250	0.020	0.069	0.301	0.172	0.286	0.666	0.211	0.306	0.102	0.044	0.122	0.144	2.902	2.536	0.298	0.294	0.434	0.285	0.095	0.148	0.081	0.078	0.357	0.689	0.106	0.137	0.015	0.037	0.047	0.050	0.070	0.098	0.048	0.028	0.041	0.113
83	chr1	11104821	11134911	+	0	NA	exon (NM_003132, exon 1 of 8)	exon (NM_003132, exon 1 of 8)	225	NM_003132	6723	Hs.76244	NM_003132	ENSG00000116649	SRM	PAPT|SPDSY|SPS1|SRML1	spermidine synthase	protein-coding	1.330	1.341	nan	5.853	0.903	0.486	1.558	0.347	0.101	0.537	0.242	0.457	2.938	0.498	0.131	0.811	0.954	0.562	0.833	5.209	5.046	2.297	0.621	0.955	nan	0.913	nan	6.085	6.489	nan	1.194	0.448	0.627	1.184	1.528	1.131	1.876	1.696	0.933	1.503	1.110	0.494	0.075	1.558	0.457	0.188	0.574	0.124	0.571
3375	chr17	36354912	36379035	+	0	NA	intron (NR_036750, intron 3 of 11)	intron (NR_036750, intron 3 of 11)	-18324	NM_001001418	414060	Hs.735975	NM_001001418	ENSG00000278299	TBC1D3C	TBC1D3D	TBC1 domain family member 3C	protein-coding	nan	1.596	1.311	0.124	0.829	0.483	0.557	0.362	0.247	0.398	0.590	0.195	0.848	0.148	0.144	0.869	0.817	1.279	1.088	nan	1.686	0.615	0.334	6.380	6.448	0.673	0.934	0.764	0.862	nan	0.785	0.557	0.680	0.200	0.236	0.554	1.176	0.851	0.903	0.113	0.238	0.063	0.191	0.557	0.195	0.064	0.046	0.224	0.184
6183	chr5	14236713	14272812	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	110951	NM_007118	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding	nan	nan	nan	2.963	0.725	0.364	0.968	1.469	0.247	1.407	0.742	1.171	nan	0.802	0.145	0.983	0.958	1.166	2.241	1.977	1.614	1.748	0.626	0.501	0.519	nan	3.626	2.560	4.124	3.255	3.632	0.833	1.341	1.960	2.250	0.934	nan	3.086	1.898	0.516	0.822	0.346	0.248	0.968	1.171	0.906	0.496	0.824	0.862
6422	chr5	121516284	121520979	+	0	NA	TTS (NM_001195535)	TTS (NM_001195535)	22760	NM_001195535	100505841	Hs.733368	NM_001195535		LOC100505841	-	zinc finger protein 474-like	protein-coding	nan	0.722	0.756	0.093	0.186	0.170		1.670	0.036	0.101	0.036	0.025	2.458	0.046	0.133	0.715	1.028	12.380	7.608	0.169	0.234	0.181	0.143	0.308	0.339	2.076	3.105	0.231	0.342	0.430	0.283	0.151	0.294	1.373	1.516	0.493	1.152	0.434	0.387	0.191	0.170	0.384	0.016		0.025		0.065	0.042	0.241
8353	chrUn_gl000214	55794	61009	+	0	NA	NA	L1MB8|LINE|L1	NA	NA									1.728	nan	nan	0.305	0.527	0.306	0.371	0.508	0.214	0.150	0.372	1.013	0.727	0.103	0.147	nan	1.339	0.389	0.681	0.747	1.006	1.347	0.409	0.389	0.316	0.773	1.557	1.479	1.984	1.937	nan	0.884	0.953	0.215	0.478	0.436	0.746	7.555	nan	0.086	0.648	0.163	0.077	0.371	1.013	0.207	2.124	0.567	0.093
2672	chr14	73796110	73813736	+	0	NA	intron (NM_001005743, intron 4 of 12)	AluJr|SINE|Alu	-92214	NR_135248	101928123	Hs.660593	NR_135248		LOC101928123	-	uncharacterized LOC101928123	ncRNA	2.172	0.937	1.141	0.229	0.286	0.145	0.150	0.270	0.198	0.071	0.068	0.200	0.315	0.122	0.142	0.467	0.551	0.247	0.361	0.355	0.432	0.235	0.126	0.573	0.580	1.757	2.075	0.739	nan	4.320	3.718	0.230	0.428	0.155	0.181	2.613	7.188	0.856	nan	0.103	0.120	0.032	0.117	0.150	0.200	0.200	0.030	0.096	1.931
962	chr1	243907082	243917899	+	0	NA	intron (NM_001206729, intron 2 of 13)	intron (NM_001206729, intron 2 of 13)	94094	NM_181690	10000	Hs.498292	NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding	nan	1.200	nan	0.734	1.762	0.829	0.529	0.289	0.219	0.173	0.252	1.006	0.389	0.080	0.134	0.554	0.360	0.337	0.506	0.936	1.555	0.717	0.260	0.353	0.370	3.972	4.072	0.414	0.463	1.573	0.889	0.190	0.335	0.641	0.864	0.738	1.177	0.804	0.600	0.041	0.065	0.185	0.254	0.529	1.006	0.152	0.075	0.192	0.172
2094	chr12	97843622	97872288	+	0	NA	promoter-TSS (NR_024037)	promoter-TSS (NR_024037)	-844	NR_024037	196475	Hs.652568	NR_024037	ENSG00000255794	RMST	LINC00054|NCRMS|NCRNA00054	rhabdomyosarcoma 2 associated transcript (non-protein coding)	ncRNA	0.740	0.808	0.537	0.122	0.601	0.279	0.284	0.153	0.101	2.578	2.454	1.041	nan	0.029	0.106	0.400	0.397	0.296	0.253	1.378	1.333	1.380	0.544	0.201	0.226	1.450	nan	0.773	nan	0.346	0.159	0.180	0.251	1.811	1.304	0.158	0.191	7.417	4.174	2.011	1.748	0.256	0.047	0.284	1.041	0.027	1.297	0.097	0.074
3778	chr18	45100593	45134118	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	210488	NR_039753	100616264		NR_039753	ENSG00000266582	MIR4527	-	microRNA 4527	ncRNA	nan	0.834	0.874	0.063	2.646	1.431	4.984	0.058	0.048	0.070	0.066	0.472	0.667	0.046	0.056	0.349	0.237	0.301	0.387	1.241	1.341	1.856	0.661	0.124	0.126	0.112	0.215	0.178	0.275	0.416	0.318	0.112	0.142	1.070	1.075	0.292	nan	0.933	0.827	0.043	0.173	0.375	0.028	4.984	0.472	0.009	0.015	0.030	0.296
3090	chr16	23950057	23964724	+	0	NA	intron (NM_212535, intron 2 of 16)	MIRb|SINE|MIR	110090	NM_212535	5579	Hs.460355	NM_002738	ENSG00000166501	PRKCB	PKC-beta|PKCB|PRKCB1|PRKCB2	protein kinase C beta	protein-coding	0.748	1.370	nan	0.083	0.401	0.251	0.604	0.056	0.045	0.082	0.073	0.068	1.795	0.044	0.072	0.226	0.121	0.080	0.113	0.146	0.167	nan	0.122	0.097	0.103	0.130	0.338	0.240	0.261	0.237	0.074	0.092	0.132	2.249	3.947	0.199	0.362	0.353	0.364	0.223	0.182	0.372	0.016	0.604	0.068	0.020	0.014	0.020	0.574
7663	chr8	48290900	48299093	+	0	NA	intron (NR_104581, intron 5 of 16)	AluSc|SINE|Alu	121526	NM_001080394	23514	Hs.381058	NM_001080394	ENSG00000164808	SPIDR	KIAA0146	scaffolding protein involved in DNA repair	protein-coding	1.278	nan	1.083	3.082	5.761	2.903	0.531	1.614	0.118	0.346	0.321	8.935	0.575	0.207	0.141	0.335	0.341	0.332	0.724	6.773	6.808	2.764	0.537	0.516	0.445	0.661	0.875	8.163	6.279	0.361	0.171	0.212	0.332	0.286	0.306	0.263	0.559	1.160	0.912	0.285	0.152	0.057	2.620	0.531	8.935	0.096	0.322	0.072	0.137
6068	chr4	166886489	166916591	+	0	NA	intron (NM_012464, intron 1 of 20)	intron (NM_012464, intron 1 of 20)	107130	NM_001204760	7092	Hs.106513	NM_012464	ENSG00000038295	TLL1	ASD6|TLL	tolloid like 1	protein-coding	nan	nan	nan	0.085	0.290	0.144	0.034	0.267	0.086	0.530	0.437	0.099	0.146	0.079	0.057	0.170	0.102	2.513	6.351	0.115	0.180	2.379	1.411	0.099	0.105	0.235	0.339	0.181	0.181	0.288	0.102	0.068	0.149	0.576	0.526	0.168	0.204	0.720	0.384	0.020	0.026	0.082	0.071	0.034	0.099	0.006	0.040	0.030	0.041
1051	chr10	16703618	16718620	+	0	NA	intron (NM_152724, intron 7 of 7)	intron (NM_152724, intron 7 of 7)	-147115	NM_001010908	389941	Hs.676792	NM_001010908	ENSG00000165985	C1QL3	C1QTNF13|C1ql|CTRP13|K100	complement C1q like 3	protein-coding	nan	1.540	0.777	2.612	2.485	1.411	0.117	0.245	0.172	0.899	0.362	2.308	1.422	0.044	0.090	0.723	0.603	0.330	0.238	2.320	1.984	9.972	5.698	0.107	0.099	0.318	0.468	1.100	1.300	0.160	0.045	0.133	0.186	0.966	1.087	0.453	1.643	1.429	0.936	0.059	0.628	0.216	0.450	0.117	2.308	0.007	0.291	0.033	0.172
3033	chr16	3142335	3163974	+	0	NA	Intergenic	AluJo|SINE|Alu	-3836	NM_001282415	84891	Hs.334515	NM_032805	ENSG00000130182	ZSCAN10	ZNF206	zinc finger and SCAN domain containing 10	protein-coding	1.170	nan	1.346	1.720	1.102	0.590	0.798	0.310	0.171	0.455	0.303	0.658	2.164	0.594	0.064	0.747	0.859	0.506	0.776	1.163	1.145	nan	1.379	0.906	0.921	0.780	nan	1.030	1.489	1.168	0.962	0.687	0.794	1.187	1.096	0.835	1.274	1.435	0.973	0.394	1.090	0.185	0.274	0.798	0.658	0.260	0.586	0.347	0.246
518	chr1	149782831	149786107	+	0	NA	promoter-TSS (NM_001161334)	promoter-TSS (NM_001161334)	-541	NM_001024599	440689	Hs.632451	NM_001024599	ENSG00000203814	HIST2H2BF	-	histone cluster 2 H2B family member f	protein-coding	6.797	5.561	7.229	4.259	4.998	2.745	2.795	2.180	0.394	4.000	1.960	2.774	26.568	5.653	0.164	8.074	13.017	7.891	12.381	10.548	6.637	13.990	5.875	13.601	13.547	5.320	6.555	8.709	10.415	7.663	13.011	2.985	10.136	6.145	3.433	10.077	9.293	3.086	1.920	2.915	9.567	0.782	0.219	2.795	2.774	1.258	4.756	2.922	2.491
4802	chr20	678087	714271	+	0	NA	Intergenic	L1MEc|LINE|L1	-39356	NM_033129	85508	Hs.355284	NM_033129	ENSG00000215397	SCRT2	ZNF898B	scratch family transcriptional repressor 2	protein-coding	1.002	1.079	1.063	0.121	0.298	0.124	0.274	0.084	0.077	0.139	0.140	0.064	0.828	0.192	0.082	3.611	5.030	0.229	0.284	0.282	0.275	0.376	0.128	0.267	0.273	0.446	0.703	0.229	0.219	0.920	0.726	0.609	0.724	0.082	0.108	0.422	0.657	0.209	0.234	0.042	0.076	0.027	0.046	0.274	0.064	0.793	0.108	0.292	0.058
5268	chr22	39094950	39103640	+	0	NA	Intergenic	MIR|SINE|MIR	-2512	NM_004286	9567	Hs.276925	NM_004286	ENSG00000100226	GTPBP1	GP-1|GP1|HSPC018	GTP binding protein 1	protein-coding	4.163	nan	2.762	2.714	3.519	2.000	3.189	2.410	0.352	1.332	0.504	4.155	5.716	3.317	0.190	4.250	4.365	5.072	8.211	3.843	3.003	5.165	2.709	4.167	4.179	4.397	nan	3.489	7.186	nan	5.248	2.149	3.539	4.825	6.383	3.226	3.774	2.073	1.128	1.759	2.668	1.140	1.855	3.189	4.155	0.972	2.899	1.557	0.951
2906	chr15	63755848	63809301	+	0	NA	Intergenic	MSTC|LTR|ERVL-MaLR	-14136	NR_046341	9960	Hs.458499	NM_006537	ENSG00000140455	USP3	SIH003|UBP	ubiquitin specific peptidase 3	protein-coding	1.467	1.537	nan	0.741	0.609	0.342	0.315	0.824	0.166	0.791	0.500	0.852	1.482	0.385	0.100	1.649	2.174	1.192	2.018	0.927	0.927	nan	0.663	0.889	0.900	1.276	1.717	2.137	2.892	2.411	2.027	0.697	0.978	2.518	2.809	1.644	3.562	1.220	0.693	0.155	0.443	0.848	0.178	0.315	0.852	0.220	0.586	0.254	0.890
2732	chr14	90961550	90992490	+	0	NA	Intergenic	Intergenic	6533	NR_135274	105370619	Hs.525530	NR_135274		LOC105370619	-	uncharacterized LOC105370619	ncRNA	3.840	2.022	nan	1.430	1.373	0.737	1.149	0.254	0.136	1.023	0.608	2.621	3.124	0.163	0.086	1.202	2.391	0.676	1.598	2.537	2.735	3.585	1.880	1.138	1.094	1.815	2.475	5.095	5.432	1.816	1.692	1.577	2.533	1.656	1.330	0.451	0.631	nan	1.302	2.896	1.986	0.468	0.260	1.149	2.621	1.250	0.975	1.052	0.191
2852	chr15	41074371	41083680	+	0	NA	intron (NM_018163, intron 1 of 10)	intron (NM_018163, intron 1 of 10)	16866	NM_001130448	643338	Hs.631715	NM_001130448	ENSG00000188277	C15orf62	-	chromosome 15 open reading frame 62	protein-coding	0.904	2.603	nan	2.933	4.371	2.203	0.867	0.335	0.259	1.582	0.701	7.223	3.283	0.100	0.071	2.328	3.454	1.525	4.313	4.552	4.413	3.100	0.624	2.003	2.007	0.654	nan	7.160	7.763	0.668	0.538	1.072	2.022	0.659	1.278	0.477	0.956	1.707	1.046	1.162	0.240	0.081	0.993	0.867	7.223	0.219	0.221	0.926	0.247
3221	chr16	89571012	89576224	+	0	NA	Intergenic	MIRb|SINE|MIR	-1178	NM_003119	6687	Hs.185597	NM_003119	ENSG00000197912	SPG7	CAR|CMAR|PGN|SPG5C	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	nan	1.647	2.302	3.273	2.877	1.354	3.968	1.188	0.214	0.552	0.224	3.301	2.924	1.978	0.040	4.092	4.424	2.327	4.122	2.489	2.472	3.007	1.094	5.042	4.685	1.679	2.446	3.292	5.423	4.325	4.260	1.605	2.881	1.409	1.955	3.632	3.183	2.393	1.316	0.821	1.225	0.202	0.854	3.968	3.301	1.139	5.481	0.552	0.856
6025	chr4	139784423	139801934	+	0	NA	intron (NR_133945, intron 2 of 2)	intron (NR_133945, intron 2 of 2)	140622	NR_133945	105377448	Hs.200280	NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA	nan	nan	0.954	0.534	1.469	0.636	0.161	0.138	0.037	0.887	0.361	1.885	3.540	0.056	0.081	0.187	0.110	0.355	0.991	0.515	0.813	1.292	0.429	0.153	0.108	0.389	0.622	0.636	0.724	0.398	0.248	0.241	0.283	0.736	0.408	0.545	nan	1.291	0.703	4.868	1.092	0.129	0.072	0.161	1.885	0.022	0.191	0.108	1.217
2155	chr12	116004160	116024146	+	0	NA	Intergenic	Intergenic	572306	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA	nan	nan	0.366	0.192	0.315	0.153	0.647	0.102	0.057	0.039	0.117	0.592	0.508	0.038	0.111	0.314	0.188	0.116	0.137	nan	nan	nan	0.044	0.568	0.597	0.142	0.212	nan	nan	0.215	0.073	0.194	0.265	0.073	0.092	0.274	0.362	nan	0.332	3.590	0.199	0.010	0.212	0.647	0.592	0.010	0.091	0.099	0.080
1711	chr11	123214457	123237442	+	0	NA	Intergenic	MIR3|SINE|MIR	26271	NR_039714	100616319		NR_039714	ENSG00000265357	MIR4493	-	microRNA 4493	ncRNA	1.068	0.990	1.863	0.092	0.373	0.196	0.297	0.078	0.105	0.422	0.309	0.591	0.873	0.052	0.103	0.608	0.537	0.180	0.155	0.437	0.565	0.124	0.109	0.343	0.359	3.428	4.036	0.113	0.144	1.923	1.655	0.591	1.101	0.656	0.528	0.649	nan	2.113	1.161	0.448	0.145	0.253	0.031	0.297	0.591	0.299	0.058	0.831	0.505
2991	chr15	91723681	91743681	+	0	NA	intron (NM_001323040, intron 2 of 12)	L1M2|LINE|L1	88795	NM_001323040	9899	Hs.21754	NM_014848	ENSG00000185518	SV2B	HsT19680	synaptic vesicle glycoprotein 2B	protein-coding	nan	nan	nan	1.327	0.618	0.288	0.291	0.083	0.105	0.947	0.615	0.233	2.916	0.038	0.099	0.586	1.381	0.192	0.187	0.459	0.512	nan	1.073	0.242	0.234	0.364	0.550	1.686	1.317	nan	0.410	0.713	1.033	1.480	1.637	0.319	nan	1.598	0.782	0.003	4.637	0.357	0.107	0.291	0.233	0.267	0.422	1.135	0.111
2836	chr15	32905282	32911702	+	0	NA	exon (NM_014783, exon 1 of 12)	exon (NM_014783, exon 1 of 12)	815	NM_001286480	9824	Hs.591130	NM_014783	ENSG00000198826	ARHGAP11A	GAP (1-12)	Rho GTPase activating protein 11A	protein-coding	4.211	nan	nan	2.827	4.484	2.721	4.282	2.930	0.375	3.079	2.113	5.290	8.427	4.171	0.131	4.583	5.064	6.735	8.443	6.798	5.928	5.321	2.277	7.812	7.893	4.895	5.736	5.549	7.932	8.719	9.464	2.936	6.829	6.855	8.984	4.692	6.315	3.042	1.608	3.059	3.220	2.465	2.830	4.282	5.290	1.782	3.009	3.838	1.858
4780	chr2	238599524	238644777	+	0	NA	intron (NM_001137551, intron 2 of 11)	intron (NM_001137551, intron 2 of 11)	21343	NM_001137553	9208	Hs.471779	NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding	1.122	nan	2.394	2.201	1.240	0.588	1.126	0.503	0.130	1.164	0.557	1.684	1.533	0.271	0.106	0.987	1.326	0.563	1.070	0.852	0.790	2.347	0.838	0.679	0.639	0.850	1.143	3.032	nan	0.647	0.436	0.748	1.169	1.536	2.338	0.648	1.339	1.240	0.685	0.582	0.606	0.385	0.368	1.126	1.684	0.088	1.045	0.354	0.175
3720	chr18	31354832	31365820	+	0	NA	Intergenic	Intergenic	201785	NM_030632	80816	Hs.464876	NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	additional sex combs like 3, transcriptional regulator	protein-coding	nan	0.972	1.000	1.984	1.112	0.555	0.501	0.041	0.059	0.686	0.499	10.215	0.683	0.038	0.083	0.265	0.244	0.169	0.232	8.019	9.793	2.004	0.589	0.138	0.127	0.409	0.605	nan	1.919	0.945	0.697	0.087	0.102	3.398	3.411	1.084	2.547	3.130	1.923	0.126	1.359	0.921	0.101	0.501	10.215	0.053	0.176	0.027	0.532
384	chr1	85033219	85050525	+	0	NA	Intergenic	AluJr|SINE|Alu	-1709	NM_004388	1486	Hs.513557	NM_004388	ENSG00000117151	CTBS	CTB	chitobiase	protein-coding	2.149	nan	nan	0.731	0.966	0.332	0.312	0.458	0.168	0.420	0.331	0.499	1.296	0.704	0.123	0.568	0.929	1.869	2.148	1.786	1.626	2.512	0.768	0.732	0.887	2.261	2.877	3.610	4.756	2.639	2.899	0.468	0.811	1.678	1.907	3.433	7.905	1.329	0.981	0.173	0.133	0.381	0.239	0.312	0.499	0.130	0.511	0.468	2.292
3242	chr17	2495878	2500434	+	0	NA	intron (NM_000430, intron 1 of 10)	intron (NM_000430, intron 1 of 10)	1233	NM_000430	5048	Hs.77318	NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding	8.916	3.055	4.072	3.057	6.036	3.653	5.048	2.215	0.261	1.946	0.973	7.285	10.673	3.866	0.172	5.966	6.342	5.808	8.085	9.527	8.280	7.555	4.397	12.556	12.745	4.024	4.781	4.776	8.091	7.809	7.789	3.102	5.588	3.081	3.784	10.562	11.395	2.306	1.157	4.588	4.536	1.049	3.137	5.048	7.285	2.284	5.017	1.802	4.936
4052	chr19	39320958	39325603	+	0	NA	promoter-TSS (NM_001398)	promoter-TSS (NM_001398)	-783	NM_001398	1891	Hs.196176	NM_001398	ENSG00000104823	ECH1	HPXEL	enoyl-CoA hydratase 1	protein-coding	2.928	2.751	2.500	4.974	2.615	1.398	1.651	1.196	0.345	1.014	0.676	2.320	15.540	2.520	0.233	2.409	3.650	1.666	3.142	3.032	2.537	4.974	3.151	6.666	7.221	3.794	4.965	4.806	8.769	nan	2.920	2.371	4.452	2.126	2.450	3.427	5.363	3.117	1.882	1.760	2.391	0.474	1.403	1.651	2.320	0.740	3.740	1.851	1.405
5628	chr3	160573156	160596390	+	0	NA	intron (NM_001317911, intron 1 of 3)	AluJb|SINE|Alu	-3613	NR_134243	151742	Hs.389027	NM_139245	ENSG00000163590	PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent 1L	protein-coding	1.912	1.969	1.330	0.389	0.598	0.303	0.270	0.189	0.104	0.229	0.214	0.155	0.205	0.018	0.080	1.012	0.987	0.908	0.819	0.422	0.489	4.743	1.891	0.282	0.190	1.123	1.515	nan	0.717	nan	1.264	0.657	0.985	2.253	3.179	1.056	2.681	1.198	0.941	0.057	0.262	0.431	0.499	0.270	0.155	0.336	0.096	0.337	0.739
7868	chr8	107447070	107463529	+	0	NA	intron (NM_001198533, intron 2 of 16)	L1PA8A|LINE|L1	-4853	NM_001198532	55074	Hs.127286	NM_018002	ENSG00000164830	OXR1	Nbla00307|TLDC3	oxidation resistance 1	protein-coding	1.293	nan	nan	0.303	0.616	0.318	0.285	0.431	0.109	0.199	0.144	2.604	0.623	0.026	0.083	0.323	0.280	0.463	0.739	0.354	0.394	nan	1.119	0.739	0.650	0.783	nan	3.980	nan	nan	0.363	0.169	0.306	0.056	0.070	2.251	5.551	0.411	0.473	0.047	0.066	0.023	0.142	0.285	2.604	0.035	0.371	0.060	2.001
5956	chr4	82263709	82278899	+	0	NA	Intergenic	Intergenic	121778	NM_001300735	153020	Hs.591696	NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding	0.991	0.687	0.923	0.083	0.260	0.155	0.118	0.378	0.096	0.082	0.067	0.110	0.273	0.028	0.071	0.253	0.148	0.395	0.461	0.264	0.273	0.347	0.231	0.200	0.274	0.470	nan	0.235	0.247	0.918	0.640	0.089	0.087	0.068	0.093	1.880	nan	0.498	0.451	0.154	0.159	0.013	0.037	0.118	0.110	0.051	0.261	0.026	1.386
7403	chr7	99538684	99552492	+	0	NA	Intergenic	AluJr|SINE|Alu	-18345	NM_181538	349149	Hs.647524	NM_181538	ENSG00000176402	GJC3	CX29|CX30.2|CX31.3|GJE1	gap junction protein gamma 3	protein-coding	nan	0.513	nan	1.199	0.313	0.148	0.147	0.130	0.140	0.473	0.247	0.321	0.434	0.075	0.185	5.743	5.836	6.745	8.395	3.066	3.135	6.448	3.239	0.324	0.417	0.188	0.254	0.199	0.228	0.358	0.151	3.720	5.194	0.475	0.442	0.173	nan	0.894	0.814	0.080	0.122	0.083	0.052	0.147	0.321	0.014	0.059	2.567	0.018
1735	chr11	129870370	129879000	+	0	NA	non-coding (NR_024233, exon 1 of 1)	non-coding (NR_024233, exon 1 of 1)	-1955	NM_020228	56980	Hs.275086	NM_020228	ENSG00000170325	PRDM10	PFM7	PR/SET domain 10	protein-coding	3.681	3.887	3.306	5.055	4.774	2.503	5.618	1.450	0.244	2.432	1.110	5.962	7.627	4.204	0.140	7.555	8.253	5.833	8.489	8.664	8.084	6.834	4.893	13.510	13.726	4.222	5.168	8.087	12.265	7.808	9.635	11.451	16.054	7.507	7.519	5.697	nan	3.027	1.931	5.405	4.470	1.689	3.390	5.618	5.962	0.782	2.374	5.625	1.762
5250	chr22	35930256	35951112	+	0	NA	intron (NM_014310, intron 1 of 2)	intron (NM_014310, intron 1 of 2)	3332	NM_014310	23551	Hs.474711	NM_014310	ENSG00000100302	RASD2	MGC:4834|Rhes|TEM2	RASD family member 2	protein-coding	nan	0.712	0.984	0.140	0.535	0.313	0.393	0.123	0.123	0.236	0.141	0.477	1.535	0.117	0.079	1.602	3.224	0.727	nan	0.777	0.731	0.814	0.316	0.695	0.717	0.303	nan	0.425	0.674	0.874	0.553	1.834	3.342	0.489	0.563	0.307	nan	0.983	0.491	0.238	0.299	0.100	0.538	0.393	0.477	0.231	0.225	1.257	0.083
2030	chr12	77819647	77834789	+	0	NA	Intergenic	Intergenic	-367858	NM_203394	144455	Hs.416375	NM_203394	ENSG00000165891	E2F7	-	E2F transcription factor 7	protein-coding	nan	0.732	0.581	0.122	0.357	0.221	0.085	0.612	0.159	0.113	0.119	0.063	0.298	0.036	0.070	0.347	0.263	0.221	0.223	0.485	0.532	0.183	0.079	0.275	0.279	4.788	5.255	nan	0.380	0.466	0.227	0.157	0.246	0.091	0.174	0.367	0.656	nan	0.633	0.073	0.325	0.006	0.062	0.085	0.063	0.025	0.033	0.033	0.132
2286	chr13	42613669	42624004	+	0	NA	intron (NM_001204504, intron 1 of 29)	intron (NM_001204504, intron 1 of 29)	-4008	NM_178009	160851	Hs.630380	NM_152910	ENSG00000102780	DGKH	DGKeta	diacylglycerol kinase eta	protein-coding	2.942	3.192	1.672	2.162	0.919	0.373	1.201	1.952	0.173	0.793	0.476	3.115	7.430	2.523	0.101	3.532	4.386	1.683	2.395	4.780	3.551	3.941	1.490	1.544	1.347	2.567	3.508	1.230	2.002	2.667	3.122	1.712	4.318	2.530	1.929	1.528	1.686	1.314	0.839	3.030	2.701	0.607	1.687	1.201	3.115	0.310	0.999	1.076	0.327
1595	chr11	95961573	96001126	+	0	NA	intron (NM_032427, intron 1 of 4)	AluSx1|SINE|Alu	-93253	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA	1.079	nan	0.832	0.178	0.600	0.329	0.821	0.557	0.072	0.286	0.193	0.076	0.682	2.274	0.178	0.754	0.729	1.076	nan	1.079	0.889	0.355	0.140	0.867	0.877	1.908	2.501	0.186	0.199	1.285	0.823	0.331	0.604	1.317	1.734	1.037	nan	0.618	0.582	0.711	0.450	0.310	0.150	0.821	0.076	0.184	0.046	0.161	0.714
8327	chr9	138007968	138043041	+	0	NA	Intergenic	Intergenic	45990	NM_001282611	10439	Hs.522484	NM_006334	ENSG00000130558	OLFM1	AMY|NOE1|NOELIN1|OlfA	olfactomedin 1	protein-coding	nan	1.014	0.727	0.065	0.702	0.357	0.164	0.066	0.082	0.045	0.071	0.055	2.865	0.039	0.048	0.664	0.991	0.112	0.143	0.217	0.254	nan	0.036	0.051	0.071	1.094	1.253	0.139	0.129	1.570	1.488	0.302	0.369	1.123	1.912	0.559	1.179	0.214	0.292	2.625	0.621	0.188	0.029	0.164	0.055	1.130	1.754	0.155	0.179
7519	chr7	141394915	141411314	+	0	NA	Intergenic	Intergenic	-1161	NM_001080392	57189	Hs.521240	NM_001080392	ENSG00000257093	KIAA1147	LCHN|PRO2561	KIAA1147	protein-coding	1.366	0.771	2.021	0.832	1.277	0.696	0.953	0.301	0.069	0.686	0.371	1.658	1.629	0.372	0.185	1.413	1.977	0.880	1.359	1.537	1.561	5.764	1.612	5.115	4.662	0.599	0.854	1.167	1.304	1.096	1.012	1.103	2.230	2.461	2.092	0.733	1.103	2.304	nan	0.408	0.615	0.595	0.483	0.953	1.658	0.144	0.538	0.706	0.227
1750	chr11	134477182	134485902	+	0	NA	Intergenic	LTR16A|LTR|ERVL	175166	NR_033852	283177	Hs.504390	NR_033852		LOC283177	-	uncharacterized LOC283177	ncRNA	0.305	nan	0.525	0.020	0.149	0.055	0.163	0.035		0.072	0.075	0.234	nan	0.025	0.041	0.436	0.374	0.056	0.088	0.414	0.302	0.095	0.102	0.105	0.120	0.125	0.258	0.053	0.130	0.338	0.207	0.715	0.950	0.073	0.064	0.024	0.124	0.276	0.313	7.276	0.563		0.009	0.163	0.234	0.022		0.329	
5664	chr3	172050511	172078295	+	0	NA	intron (NM_001135095, intron 20 of 25)	intron (NM_001135095, intron 20 of 25)	101843	NM_198407	2693	Hs.130212	NM_004122	ENSG00000121853	GHSR	GHDP	growth hormone secretagogue receptor	protein-coding	1.540	1.255	0.858	0.260	1.192	0.646	0.321	0.890	0.203	1.031	0.619	0.212	0.210	0.066	0.107	0.290	0.226	0.472	0.813	0.418	0.497	5.395	2.292	0.286	0.320	0.783	1.078	0.771	0.766	0.655	0.312	0.243	0.387	0.684	1.138	0.314	0.622	2.186	1.056	0.072	0.103	0.117	0.145	0.321	0.212	0.052	0.194	0.125	0.148
5971	chr4	91155101	91176017	+	0	NA	intron (NM_207491, intron 1 of 7)	intron (NM_207491, intron 1 of 7)	9377	NM_207491	401145	Hs.654735	NM_207491	ENSG00000184305	CCSER1	FAM190A	coiled-coil serine rich protein 1	protein-coding	0.679	0.739	0.646	0.117	0.625	0.431	0.152	0.075	0.054	0.112	0.114	0.023	0.300	0.047	0.046	0.543	0.529	3.338	5.210	0.224	0.228	0.058	0.034	0.555	0.521	1.177	1.526	0.331	0.298	0.470	0.287	0.745	1.150	0.426	0.771	0.259	0.589	0.369	0.370	0.032	0.106	0.055	0.084	0.152	0.023	0.018	0.005	0.717	0.117
1610	chr11	105745254	105754065	+	0	NA	intron (NM_001077243, intron 5 of 16)	L1PA7|LINE|L1	143355	NM_001318750	84437	Hs.266782	NM_032424	ENSG00000170903	MSANTD4	KIAA1826	Myb/SANT DNA binding domain containing 4 with coiled-coils	protein-coding	0.533	0.835	0.467	0.069	0.115	0.127	0.116	0.025	0.068	0.053	0.114	0.149	0.344	0.030	0.127	8.433	5.517	1.572	0.513	0.202	0.340	0.253	0.103	1.623	1.571	0.537	0.579	0.435	0.340	0.284	0.169	0.647	1.097	0.116	0.144	0.253	0.348	0.354	0.476	0.069	0.051	0.031	0.124	0.116	0.149		0.012	0.423	0.028
4715	chr2	217846238	217854000	+	0	NA	Intergenic	Intergenic	114624	NR_130782	101928327	Hs.350698	NR_130782	ENSG00000223874	LINC01921	-	long intergenic non-protein coding RNA 1921	ncRNA	nan	1.196	nan	2.509	2.157	1.138	1.215	0.074	0.145	1.024	0.673	6.984	2.703	0.055	0.084	0.466	0.220	0.185	0.239	4.803	5.240	3.351	1.688	0.281	0.293	0.715	1.014	7.219	nan	0.380	0.166	0.316	0.383	0.705	0.668	0.296	0.320	1.975	0.921	2.377	0.379	0.209	0.114	1.215	6.984	0.127	2.584	0.076	0.112
779	chr1	202125203	202140627	+	0	NA	Intergenic	Intergenic	-2199	NM_002832	5778	Hs.402773	NM_002832	ENSG00000143851	PTPN7	BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI	protein tyrosine phosphatase, non-receptor type 7	protein-coding	1.418	0.993	2.716	0.148	0.392	0.259	0.305	0.174	0.104	0.174	0.174	0.202	0.444	0.105	0.077	3.291	5.375	1.441	1.284	0.972	0.978	0.764	0.197	nan	nan	0.768	1.455	0.589	0.916	1.309	1.497	1.648	2.417	0.218	0.302	0.630	1.056	0.657	0.457	0.380	0.342	0.048	0.140	0.305	0.202	0.282	0.235	2.007	0.535
7268	chr7	44212623	44230634	+	0	NA	intron (NM_000162, intron 1 of 9)	ERV3-16A3_I-int|LTR|ERVL	7394	NM_000162	2645	Hs.1270	NM_000162	ENSG00000106633	GCK	FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2	glucokinase	protein-coding	1.533	2.675	nan	0.601	0.218	0.151	1.411	0.139	0.116	0.663	0.413	0.483	0.553	0.096	0.120	0.669	0.588	0.234	0.304	0.747	0.622	4.384	1.196	0.429	0.464	0.292	0.553	2.045	2.456	0.860	0.629	0.274	0.348	1.133	1.010	0.413	0.669	1.959	1.094	1.711	1.178	0.152	0.242	1.411	0.483	0.177	0.096	0.067	0.147
697	chr1	181469952	181491784	+	0	NA	intron (NM_001205294, intron 3 of 45)	intron (NM_001205294, intron 3 of 45)	28182	NM_001205294	777	Hs.437444	NM_000721	ENSG00000198216	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3|gm139	calcium voltage-gated channel subunit alpha1 E	protein-coding	nan	nan	0.808	0.500	0.520	0.337	0.935	0.088	0.073	0.295	0.170	0.102	0.759	0.036	0.139	0.506	0.356	0.344	0.492	0.901	nan	5.103	1.918	nan	0.236	0.219	0.427	1.749	1.735	0.429	0.165	0.342	0.393	1.772	2.219	0.221	nan	1.752	1.110	0.330	0.540	0.433	0.113	0.935	0.102	0.098	0.061	0.072	0.079
981	chr1	249118862	249121583	+	0	NA	promoter-TSS (NM_001322463)	promoter-TSS (NM_001322463)	-68	NM_030645	80851	Hs.298573	NM_030645	ENSG00000175137	SH3BP5L	-	SH3 binding domain protein 5 like	protein-coding	6.587	5.692	6.448	10.170	9.226	6.489	2.254	4.320	0.341	4.072	1.557	4.651	13.756	4.857	0.174	9.271	10.088	14.292	19.427	13.007	12.501	13.924	6.645	19.341	23.065	5.897	6.459	8.084	10.750	9.055	9.167	2.651	4.911	7.338	6.914	7.917	11.405	4.731	2.542	2.963	2.537	1.295	2.323	2.254	4.651	2.170	2.907	1.642	3.231
3001	chr15	94951862	94962187	+	0	NA	intron (NM_001159643, intron 16 of 19)	intron (NM_001159643, intron 16 of 19)	57860	NM_001159644	55784	Hs.33368	NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding	nan	nan	nan	0.026	1.263	0.467	4.973	0.079	0.079	2.402	1.619	4.051	0.658	0.021	0.085	0.368	0.385	0.412	0.395	3.954	4.498	nan	0.681	0.308	0.280	0.740	0.985	0.143	0.205	nan	0.314	0.277	0.468	3.198	3.676	0.139	nan	2.639	1.030	0.022	0.383	1.640	0.254	4.973	4.051		0.039	0.164	0.023
6559	chr5	175173063	175183395	+	0	NA	Intergenic	Intergenic	-45381	NM_006650	10814	Hs.193235	NM_006650	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding	1.038	0.712	0.738	0.094	0.126	0.124	0.260	0.051	0.016	0.080	0.128	0.279	0.642	0.063	0.098	0.205	0.208	0.093	nan	0.886	1.010	0.974	0.495	0.063	0.075	4.393	nan	0.195	0.246	1.991	2.113	0.116	0.170	0.638	0.685	0.388	0.595	0.386	0.374	0.032	0.077	0.240	0.354	0.260	0.279	1.424	0.134	0.048	0.048
1010	chr10	8066608	8096536	+	0	NA	Intergenic	Intergenic	12882	NR_104329	399717	Hs.158992	NM_207423	ENSG00000197308	GATA3-AS1	-	GATA3 antisense RNA 1	ncRNA	0.344	0.438	0.440	0.108	0.191	0.129	0.094	0.133	0.075	0.152	0.107	0.068	0.233	0.083	0.073	0.262	0.183	0.471	0.750	0.162	0.228	2.795	0.965	0.083	0.072	0.115	0.244	0.095	0.112	0.233	0.100	0.139	0.125	0.063	0.072	0.062	0.166	0.197	0.258	0.024	0.021	0.013	0.005	0.094	0.068	0.003	0.048	0.036	0.038
8377	chrX	24893673	24909648	+	0	NA	intron (NM_016937, intron 34 of 36)	intron (NM_016937, intron 34 of 36)	132405	NM_139058	170302	Hs.300304	NM_139058	ENSG00000004848	ARX	CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS	aristaless related homeobox	protein-coding	0.713	0.837	0.506	0.160	0.345	0.171	0.128	0.109	0.081	0.366	0.221	0.090	0.300	0.149	0.046	0.089	0.077	0.496	0.797	0.305	0.333	2.532	2.821	0.443	0.358	0.330	0.554	0.391	0.696	0.325	0.233	0.144	0.209	0.740	0.828	0.278	0.632	0.685	0.533	0.038	0.072	0.079	0.055	0.128	0.090	0.031	0.031	0.037	0.112
7309	chr7	66642039	66660455	+	0	NA	intron (NM_018264, intron 14 of 15)	intron (NM_018264, intron 14 of 15)	-71863	NR_039793	100616310		NR_039793	ENSG00000266525	MIR4650-1	-	microRNA 4650-1	ncRNA	nan	nan	nan	0.441	0.624	0.235	0.548	2.003	0.497	0.350	0.334	0.409	0.518	0.071	0.173	1.100	1.495	1.024	0.901	0.543	0.519	8.092	2.978	0.490	0.415	0.948	1.312	1.608	1.876	1.224	1.241	0.418	0.972	3.694	4.561	0.541	1.252	3.532	1.621	0.052	0.204	1.112	0.461	0.548	0.409	0.206	1.028	0.495	0.296
3310	chr17	17724080	17754638	+	0	NA	intron (NM_001005291, intron 1 of 19)	L2b|LINE|L2	966	NM_001005291	6720	Hs.592123	NM_004176	ENSG00000072310	SREBF1	SREBP-1c|SREBP1|SREBP1a|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	3.940	1.996	3.028	2.005	5.407	2.728	2.133	1.159	0.216	0.958	0.501	1.299	2.676	1.637	0.054	1.805	2.994	1.601	nan	1.726	1.627	2.506	1.337	2.894	3.156	1.293	1.771	4.563	5.301	nan	2.149	1.257	2.454	1.664	0.936	2.570	5.384	0.847	0.427	1.806	3.151	0.524	0.707	2.133	1.299	0.920	3.526	1.682	2.362
4077	chr19	42363029	42369172	+	0	NA	intron (NM_001321485, intron 3 of 5)	intron (NM_001321485, intron 3 of 5)	1584	NM_001321483	6223	Hs.438429	NM_001022	ENSG00000105372	RPS19	DBA|DBA1|S19	ribosomal protein S19	protein-coding	5.040	2.881	4.890	3.265	3.466	1.460	2.322	1.451	0.132	2.344	1.048	3.290	4.785	4.571	0.169	4.375	3.812	4.727	6.256	6.134	6.506	7.174	3.673	12.580	13.323	3.501	5.694	8.580	10.564	7.819	8.784	6.564	10.823	4.302	5.325	7.953	6.708	3.603	2.122	2.985	4.182	0.571	0.813	2.322	3.290	0.916	2.000	2.468	2.075
4279	chr2	28931166	28942158	+	0	NA	Intergenic	Intergenic	-37952	NM_206876	5500	Hs.702907	NM_002709	ENSG00000213639	PPP1CB	HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD	protein phosphatase 1 catalytic subunit beta	protein-coding	1.017	1.617	1.203	0.769	0.336	0.219	0.700	0.711	0.265	0.487	0.240	0.398	8.231	0.118	0.117	0.358	0.291	0.346	1.405	0.458	0.488	1.611	0.475	0.459	0.461	1.033	1.401	3.856	nan	0.447	0.249	0.224	0.335	0.869	1.371	0.439	1.234	1.114	0.756	0.512	2.442	0.086	0.188	0.700	0.398	0.129	0.839	0.073	0.091
4083	chr19	42745435	42761713	+	0	NA	exon (NM_006494, exon 4 of 4)	exon (NM_006494, exon 4 of 4)	4477	NM_001308402	2077	Hs.655969	NM_006494	ENSG00000105722	ERF	CHYTS|CRS4|PE-2|PE2	ETS2 repressor factor	protein-coding	3.988	2.286	2.648	2.029	2.736	1.531	3.170	1.831	0.404	1.242	0.749	2.860	4.809	6.165	0.160	2.443	3.322	2.765	4.124	3.456	3.445	4.419	1.780	6.348	6.521	3.310	4.940	3.739	5.193	2.725	2.568	1.764	2.935	3.105	3.182	2.832	4.269	2.611	1.470	1.471	2.502	0.944	1.673	3.170	2.860	1.332	1.702	1.641	1.420
7925	chr8	128012462	128032428	+	0	NA	Intergenic	Intergenic	-2954	NR_045262	100750225	Hs.571530	NR_045262	ENSG00000253438	PCAT1	PCA1|PCAT-1	prostate cancer associated transcript 1 (non-protein coding)	ncRNA	nan	nan	nan	0.138	0.309	0.207	0.083	0.183	0.111	0.063	0.067	0.126	nan	0.038	0.089	0.230	0.122	5.745	3.011	0.343	0.415	0.162	0.140	nan	nan	3.843	5.986	0.174	0.283	0.245	0.103	0.111	0.176	0.073	0.085	0.216	0.271	0.291	0.395	0.036	0.048	0.019	0.063	0.083	0.126	0.116	0.015	0.039	0.100
3739	chr18	35062752	35108418	+	0	NA	intron (NM_001025087, intron 1 of 12)	intron (NM_001025087, intron 1 of 12)	-39118	NR_132967	106635546		NR_132967		SNORA111	-	small nucleolar RNA, H/ACA box 111	snoRNA	nan	0.911	0.612	0.461	1.035	0.494	2.038	0.043	0.056	0.591	0.349	1.026	0.826	0.055	0.063	0.627	0.854	0.660	0.483	1.278	1.252	4.976	1.257	0.140	0.122	0.366	0.521	nan	1.681	0.624	0.601	0.217	0.318	1.608	1.397	0.373	0.564	2.483	1.703	2.892	1.211	0.407	0.161	2.038	1.026	0.219	0.058	0.103	0.160
321	chr1	56181485	56195494	+	0	NA	Intergenic	MIRc|SINE|MIR	497175	NR_039618	100616272		NR_039618	ENSG00000265822	MIR4422	mir-4422	microRNA 4422	ncRNA	1.064	0.713	0.977	0.164	0.235	0.068	0.138	0.856	0.164	0.077	0.117	0.119	0.378	0.039	0.109	0.367	0.280	2.558	6.712	0.457	0.492	0.122	0.077	0.538	0.537	0.619	0.953	0.409	0.469	0.385	0.165	0.175	0.283	0.045	0.040	0.490	nan	0.589	0.536	0.083	0.070	0.006	0.080	0.138	0.119	0.119	0.058	0.040	0.167
5700	chr3	177789315	177808558	+	0	NA	Intergenic	L2a|LINE|L2	264283	NR_110826	102724550	Hs.570526	NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA	1.991	2.589	1.822	2.943	6.898	3.478	1.165	0.905	0.150	3.000	1.500	2.106	4.330	0.056	0.076	0.442	0.628	0.370	0.646	3.021	3.025	8.203	4.515	0.280	0.265	3.303	3.575	3.140	3.326	1.365	1.459	0.368	0.599	3.067	3.302	1.969	4.483	2.387	1.630	1.290	1.319	0.890	0.536	1.165	2.106	0.238	0.922	0.565	1.371
3209	chr16	87347006	87359388	+	0	NA	Intergenic	AluJr|SINE|Alu	2082	NR_135180	101928659	Hs.667450	NR_135180	ENSG00000270006	LOC101928659	-	uncharacterized LOC101928659	ncRNA	nan	1.115	3.584	1.858	1.725	0.840	2.458	0.630	0.091	0.432	0.232	2.034	1.956	0.676	0.106	1.719	1.764	1.328	2.094	1.749	1.732	2.074	0.853	2.756	2.779	0.976	1.557	1.501	2.794	6.255	6.807	0.945	1.375	0.855	0.972	1.855	2.639	1.480	0.858	0.569	0.532	0.140	0.441	2.458	2.034	1.268	0.977	0.249	0.790
1079	chr10	26138157	26149492	+	0	NA	Intergenic	Intergenic	78815	NR_120650	101929073	Hs.409816	NR_120650	ENSG00000226304	LOC101929073	-	uncharacterized LOC101929073	ncRNA	0.633	0.771	0.946	0.131	0.454	0.244	0.479	0.226	0.283	0.145	0.190	0.032	0.138	0.071	0.096	0.387	0.228	0.264	0.309	0.202	0.256	2.397	0.549	0.140	0.111	1.860	2.542	0.107	0.139	0.165	0.143	0.072	0.198	3.507	5.428	0.250	0.427	0.666	0.559	0.020	0.061	1.099	0.021	0.479	0.032		0.062		0.065
7154	chr7	8629988	8646790	+	0	NA	intron (NM_152745, intron 2 of 2)	intron (NM_152745, intron 2 of 2)	164804	NM_152745	30010	Hs.487564	NM_152745	ENSG00000122584	NXPH1	NPH1|Nbla00697	neurexophilin 1	protein-coding	1.009	1.587	1.596	0.231	0.318	0.190	0.182	0.132	0.057	0.299	0.270	0.494	nan	0.032	0.177	0.511	0.399	0.120	nan	0.597	0.726	nan	1.381	0.457	0.355	0.671	0.853	nan	0.443	0.267	0.122	0.184	0.240	2.799	3.402	0.368	0.632	1.128	0.702	0.027	0.172	0.867	0.095	0.182	0.494		0.163	0.087	0.264
2422	chr13	105675855	105691679	+	0	NA	Intergenic	Intergenic	-434449	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding	0.692	0.791	0.706	0.109	0.285	0.111	0.315	0.038	0.095	0.107	0.085	0.140	0.311	0.007	0.101	2.249	1.150	5.124	1.134	0.349	0.439	0.134	0.138	27.208	27.151	0.369	nan	0.286	0.321	0.427	0.169	0.334	0.533	0.049	0.060	0.294	nan	0.177	0.200	0.043	0.078	0.012	0.135	0.315	0.140	0.049	0.026	0.119	0.031
5977	chr4	102563075	102574063	+	0	NA	Intergenic	Intergenic	-143195	NM_017935	55024	Hs.480400	NM_017935	ENSG00000153064	BANK1	BANK	B-cell scaffold protein with ankyrin repeats 1	protein-coding	0.714	nan	nan	0.265	0.283	0.189	0.108	0.089	0.044	0.184	0.138	0.240	0.632		0.065	0.183	0.109	0.338	nan	0.178	0.241	0.182	0.055	0.102	0.151	5.209	5.501	0.307	0.295	0.440	0.188	0.130	0.115	0.100	0.078	0.208	nan	0.427	0.292	0.020	0.056	0.018	0.080	0.108	0.240	0.072	0.102	0.045	0.034
1590	chr11	95520765	95532317	+	0	NA	intron (NM_014679, intron 1 of 10)	intron (NM_014679, intron 1 of 10)	2916	NM_001243777	9702	Hs.101014	NM_014679	ENSG00000166037	CEP57	MVA2|PIG8|TSP57	centrosomal protein 57	protein-coding	2.736	nan	1.984	2.752	2.902	1.666	2.075	0.890	0.112	2.421	0.958	2.658	7.419	2.707	0.183	6.336	5.655	4.176	nan	7.034	5.603	11.711	6.536	13.415	14.743	3.625	4.408	3.585	5.635	4.677	5.225	3.049	5.363	6.507	6.584	3.544	nan	3.501	1.586	3.706	2.231	1.084	2.150	2.075	2.658	0.965	1.360	1.829	0.914
1652	chr11	113325134	113387176	+	0	NA	Intergenic	AluY|SINE|Alu	-10154	NM_000795	1813	Hs.73893	NM_000795	ENSG00000149295	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding	0.748	0.997	0.735	0.224	0.342	0.187	0.396	0.047	0.049	0.173	0.160	0.309	0.730	0.047	0.107	7.547	nan	0.717	1.000	0.680	0.635	1.245	0.345	0.592	0.618	0.449	nan	0.791	0.771	1.037	0.814	1.697	2.621	1.133	1.460	0.678	2.406	0.625	0.619	0.107	0.380	0.534	0.075	0.396	0.309	0.265	0.080	1.054	0.527
4816	chr20	3868208	3880397	+	0	NA	intron (NM_001324191, intron 2 of 7)	intron (NM_001324191, intron 2 of 7)	3853	NM_001324193	80025	Hs.114180	NM_024960	ENSG00000125779	PANK2	C20orf48|HARP|HSS|NBIA1|PKAN	pantothenate kinase 2	protein-coding	3.862	3.907	5.884	3.448	2.732	1.688	2.102	1.431	0.249	1.235	0.830	2.477	6.195	2.206	0.119	3.545	3.998	3.247	4.128	5.260	4.494	4.706	1.939	2.826	2.909	3.001	3.518	6.687	9.314	4.950	5.062	1.851	3.829	3.020	3.315	3.046	4.009	2.149	1.019	2.334	2.717	0.758	1.148	2.102	2.477	0.750	1.344	1.071	1.301
760	chr1	197880872	197887244	+	0	NA	intron (NM_001014434, intron 1 of 5)	intron (NM_001014434, intron 1 of 5)	2423	NM_001014434	56956	Hs.442578	NM_020204	ENSG00000143355	LHX9	-	LIM homeobox 9	protein-coding	3.250	nan	1.515	0.467	1.140	0.731	2.991	0.457	0.051	1.118	0.926	0.258	3.264	0.318	0.099	0.398	0.500	0.799	1.441	3.855	3.176	0.085	0.067	0.645	0.802	7.009	8.639	0.940	1.098	1.487	1.469	0.304	0.351	4.775	3.374	0.562	1.072	2.042	1.227	0.036	0.330	1.638	1.668	2.991	0.258	0.350	0.583	0.109	0.240
863	chr1	214587310	214670199	+	0	NA	intron (NM_005401, intron 2 of 18)	intron (NM_005401, intron 2 of 18)	96270	NM_005401	5784	Hs.193557	NM_005401	ENSG00000152104	PTPN14	PEZ|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	1.404	1.336	1.572	0.196	0.518	0.213	0.270	1.022	0.217	0.159	0.200	0.240	nan	3.048	0.179	1.074	0.879	2.457	4.892	0.494	0.621	nan	0.129	2.003	2.212	1.405	nan	0.543	0.641	1.979	1.761	0.221	0.353	0.283	0.388	1.245	3.266	0.775	0.702	0.021	0.131	0.049	0.143	0.270	0.240	0.202	0.376	0.191	0.743
5459	chr3	111577485	111592757	+	0	NA	intron (NM_001134439, intron 1 of 17)	AluSx|SINE|Alu	6553	NM_001134439	90102	Hs.603252	NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding	2.018	nan	2.325	0.373	1.125	0.551	0.289	4.211	0.452	0.306	0.166	0.641	1.464	0.078	0.094	0.438	0.380	0.873	2.114	2.162	nan	3.425	0.920	0.405	0.551	nan	0.290	0.571	0.728	1.986	1.746	0.170	0.340	0.414	0.417	3.733	7.895	1.361	0.794	0.477	0.105	0.087	2.464	0.289	0.641	0.178	0.404	0.058	3.945
7815	chr8	97938995	97958453	+	0	NA	intron (NM_016134, intron 4 of 7)	intron (NM_016134, intron 4 of 7)	291269	NM_016134	10404	Hs.156178	NM_016134	ENSG00000104324	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding	7.164	3.938	8.231	0.240	0.449	0.256	0.444	1.167	0.058	0.008	0.060	0.971	0.909	0.079	0.087	0.651	0.372	3.746	nan	1.076	1.114	1.585	0.515	0.369	0.381	0.464	0.790	0.804	0.906	0.635	0.553	0.243	0.384	0.552	0.679	7.011	14.233	0.278	0.330	0.037	0.124	0.191	0.135	0.444	0.971	0.185	0.062	0.101	8.040
4975	chr20	46473228	46477991	+	0	NA	Intergenic	Intergenic	-60249	NM_198596	55959	Hs.162016	NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding	nan	nan	1.745	0.093	0.294	0.068	0.695	0.075	0.081	0.132	0.111	0.200	2.074	0.045	0.092	0.481	0.282	0.244	0.434	0.658	0.775	nan	0.088	0.223	0.283	3.316	4.078	0.200	0.153	nan	5.239	0.350	0.427	0.115	0.287	0.479	0.613	0.126	0.292	0.140	0.060	0.100	0.093	0.695	0.200	3.710	0.042	0.084	0.130
2469	chr13	114299411	114309687	+	0	NA	intron (NM_000705, intron 6 of 6)	intron (NM_000705, intron 6 of 6)	7964	NM_000705	496	Hs.434202	NM_000705	ENSG00000186009	ATP4B	ATP6B	ATPase H+/K+ transporting beta subunit	protein-coding	1.231	nan	1.157	1.771	0.536	0.359	0.974	0.345	0.016	1.039	0.475	1.786	12.227	0.052	0.058	0.707	0.824	0.269	0.548	3.109	2.412	2.564	0.997	0.154	0.127	0.392	0.509	1.766	1.569	1.550	1.813	0.248	0.418	1.608	1.170	0.157	0.197	0.786	0.350	13.784	1.071	0.177	0.116	0.974	1.786	0.302	4.120	0.048	0.060
3317	chr17	19013173	19017209	+	0	NA	Intergenic	AluSx|SINE|Alu	-15591	NM_001129778	400581	Hs.647426	NM_001129778	ENSG00000189152	GRAPL	-	GRB2 related adaptor protein like	protein-coding	5.171	3.882	3.282	5.083	14.009	8.082	9.989	2.193	0.408	2.533	1.160	7.881	13.877	10.182	0.338	11.877	13.312	6.651	nan	21.526	17.784	8.676	9.883	11.521	11.628	4.709	4.970	14.762	21.404	nan	13.124	6.464	7.713	6.349	6.149	9.977	10.035	2.477	1.162	3.598	6.739	1.502	4.161	9.989	7.881	2.789	5.710	1.663	2.545
1745	chr11	132906308	132935255	+	0	NA	intron (NM_001012393, intron 1 of 7)	intron (NM_001012393, intron 1 of 7)	-107118	NM_001319105	4978	Hs.4817	NM_002545	ENSG00000183715	OPCML	IGLON1|OBCAM|OPCM	opioid binding protein/cell adhesion molecule like	protein-coding	0.374	nan	0.789	0.046	0.316	0.111	0.625	0.026	0.055	0.131	0.120	0.092	9.463	0.026	0.109	0.661	0.618	0.265	0.624	0.523	0.636	0.280	0.101	0.206	0.260	0.147	0.273	0.593	1.068	0.631	0.517	0.540	0.734	0.083	0.099	0.118	0.190	0.259	0.379	0.065	0.070	0.023	0.057	0.625	0.092	0.017	0.024	0.095	0.137
2594	chr14	53614072	53625311	+	0	NA	promoter-TSS (NR_110062)	promoter-TSS (NR_110062)	355	NM_001160147	80821	Hs.125525	NM_030637	ENSG00000100523	DDHD1	PA-PLA1|PAPLA1|SPG28	DDHD domain containing 1	protein-coding	nan	nan	1.870	2.238	2.389	0.985	1.595	0.958	0.086	0.423	0.289	2.913	3.287	0.908	0.110	2.497	3.032	1.869	2.018	3.722	2.699	5.401	1.583	3.806	3.846	0.966	1.391	1.652	2.276	3.086	3.923	0.974	2.059	0.991	0.875	1.040	1.414	nan	1.027	1.244	1.913	0.109	6.005	1.595	2.913	0.320	1.139	0.617	0.344
3966	chr19	11198257	11207969	+	0	NA	intron (NM_001195799, intron 1 of 16)	intron (NM_001195799, intron 1 of 16)	3075	NM_001195800	3949	Hs.213289	NM_000527	ENSG00000130164	LDLR	FH|FHC|LDLCQ2	low density lipoprotein receptor	protein-coding	4.044	5.269	4.394	3.624	5.708	3.224	6.829	4.038	0.977	2.972	1.014	5.449	2.690	2.517	0.098	3.591	4.169	6.490	13.200	5.095	3.636	5.902	5.230	8.846	9.015	3.326	4.063	3.956	8.631	3.015	3.016	1.584	3.169	3.304	2.675	3.639	4.362	2.950	1.538	3.281	2.925	0.940	0.775	6.829	5.449	1.037	2.835	1.973	2.105
3702	chr18	25437142	25444814	+	0	NA	Intergenic	Intergenic	175571	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding	1.160	1.982	1.628	0.368	0.603	0.422	5.776	0.116	0.062	0.590	0.485	2.095	6.554	0.029	0.083	0.476	0.581	0.533	nan	4.085	4.026	2.943	0.566	0.114	0.252	2.614	2.408	3.478	3.249	2.285	3.477	0.357	0.786	1.325	0.617	0.901	2.285	6.117	2.788	0.873	1.205	0.313	0.311	5.776	2.095	0.827	0.862	0.634	1.199
7743	chr8	73445843	73462810	+	0	NA	intron (NM_004770, intron 1 of 2)	intron (NM_004770, intron 1 of 2)	4700	NM_004770	9312	Hs.661102	NM_004770	ENSG00000182674	KCNB2	KV2.2	potassium voltage-gated channel subfamily B member 2	protein-coding	4.137	1.103	3.838	3.296	1.640	0.955	0.489	0.119	0.067	1.626	0.953	3.872	6.467	0.300	0.099	3.270	4.199	4.047	2.471	10.034	8.548	4.149	1.427	17.264	17.385	2.434	3.115	2.588	3.959	3.478	3.692	2.683	6.318	5.720	6.259	4.309	5.365	3.692	1.911	1.393	2.636	1.310	1.000	0.489	3.872	0.354	2.359	2.497	2.101
2124	chr12	106192002	106225650	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	108274	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA	0.777	1.093	nan	1.677	1.341	0.716	0.434	0.488	0.128	0.410	0.251	4.111	1.261	0.043	0.150	0.367	0.277	0.178	0.257	2.076	3.374	1.367	0.286	0.358	0.428	0.384	0.656	1.939	1.596	0.562	0.277	0.264	0.342	0.303	0.426	0.248	0.454	1.137	0.735	1.107	0.336	0.076	0.684	0.434	4.111	0.035	0.171	0.086	0.243
6104	chr4	185481825	185486293	+	0	NA	Intergenic	Intergenic	61967	NR_131967	105377586	Hs.338354	NR_131965	ENSG00000254233	LVCAT8	-	liver cancer-associated transcript 8	ncRNA	nan	0.613	nan	0.059	0.238	0.143	0.087	0.099	0.071		0.090	0.139	0.309	0.024	0.063	2.504	2.426	10.199	11.771	0.231	0.340	0.124	0.041	1.206	1.227	0.030	0.136	0.114	0.289	0.360	0.077	0.499	0.756	0.037	0.069	0.082	0.211	0.228	0.191		0.071			0.087	0.139		0.046	0.221	
6755	chr6	39148935	39158038	+	0	NA	Intergenic	L2c|LINE|L2	43765	NM_003740	8645	Hs.444448	NM_003740	ENSG00000164626	KCNK5	K2p5.1|KCNK5b|TASK-2|TASK2	potassium two pore domain channel subfamily K member 5	protein-coding	nan	2.742	nan	0.204	0.687	0.380	0.071	0.096	0.088	0.378	0.190	0.306	2.334	0.073	0.099	0.525	0.505	0.204	nan	nan	0.505	11.326	3.145	0.391	0.401	0.218	0.455	4.783	3.405	0.339	0.260	0.278	0.430	0.149	0.121	0.433	0.892	2.119	1.099	2.929	0.292	0.011	0.009	0.071	0.306	0.022	0.089	0.077	0.328
282	chr1	44870109	44891813	+	0	NA	intron (NM_001319956, intron 2 of 14)	intron (NM_001319956, intron 2 of 14)	-8535	NM_001319957	55182	Hs.456557	NM_018150	ENSG00000187147	RNF220	C1orf164	ring finger protein 220	protein-coding	nan	0.631	nan	0.345	0.249	0.147	0.724	1.059	0.199	0.300	0.287	0.039	0.671	0.115	0.105	1.060	1.737	0.239	0.465	0.912	0.882	1.546	0.375	0.366	0.405	0.268	nan	nan	1.791	1.467	1.221	7.226	nan	0.758	0.735	0.807	1.843	0.629	0.623	0.075	0.291	0.263	0.311	0.724	0.039	0.081	0.253	11.568	0.301
7594	chr8	11265184	11289052	+	0	NA	intron (NR_026814, intron 3 of 6)	AluSc8|SINE|Alu	47158	NM_053279	83648	Hs.124299	NM_053279	ENSG00000154319	FAM167A	C8orf13|D8S265	family with sequence similarity 167 member A	protein-coding	0.862	0.672	nan	0.560	0.692	0.436	0.701	0.085	0.040	0.152	0.186	0.998	2.207	0.141	0.088	0.395	0.420	0.220	0.419	1.541	nan	0.970	0.331	0.644	0.632	0.774	1.261	1.830	1.507	0.567	0.512	0.360	0.347	0.231	0.206	0.589	1.346	5.016	2.211	4.911	2.690	0.080	0.007	0.701	0.998	0.281	2.999	0.131	0.275
3622	chr17	80158597	80171328	+	0	NA	intron (NM_198082, intron 1 of 16)	AluJb|SINE|Alu	5727	NM_198082	284001	Hs.631724	NM_152675	ENSG00000176155	CCDC57	-	coiled-coil domain containing 57	protein-coding	2.245	3.057	2.131	1.887	1.614	0.797	3.016	0.844	0.368	2.884	1.478	1.724	5.250	1.288	0.141	2.024	nan	1.463	2.606	nan	2.675	5.210	1.802	1.397	1.363	1.353	2.080	2.360	3.824	0.559	0.628	1.050	1.621	3.387	3.419	1.939	2.503	1.505	0.961	1.250	2.132	0.625	0.376	3.016	1.724	0.940	1.445	0.300	0.735
5489	chr3	116086225	116099058	+	0	NA	intron (NM_002338, intron 1 of 6)	intron (NM_002338, intron 1 of 6)	13770	NR_109998	101926903	Hs.26479	NR_109998	ENSG00000240922	LSAMP-AS1	-	LSAMP antisense RNA 1	ncRNA	1.135	nan	0.677	0.055	0.482	0.276	0.240	0.104	0.101	0.441	0.342	0.159	0.120	0.144	0.066	0.251	0.201	0.266	0.343	0.252	nan	0.369	0.231	0.281	0.311	nan	4.812	0.228	0.221	0.890	0.609	0.087	0.180	0.245	0.255	0.313	0.434	0.759	0.482	0.043	0.076	0.067	0.123	0.240	0.159	0.126	0.016	0.044	0.212
989	chr10	1549549	1568225	+	0	NA	intron (NM_018702, intron 1 of 9)	intron (NM_018702, intron 1 of 9)	-9938	NR_033387	642394	Hs.568831	NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	ncRNA	0.440	0.426	0.558	0.528	0.420	0.195	0.550	0.123	0.121	0.804	0.389	2.984	0.312	0.062	0.094	0.546	0.478	0.133	0.136	0.784	0.863	0.492	0.180	0.250	0.226	0.097	0.213	2.229	2.235	0.146	0.064	0.340	0.602	0.032	0.073	0.060	0.118	0.363	0.371	0.056	0.465	0.005	0.128	0.550	2.984	0.058	0.252	0.233	0.033
6668	chr6	24717628	24723212	+	0	NA	Intergenic	CpG	-1017	NM_030939	81688	Hs.744857	NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding	8.432	5.196	nan	8.206	7.373	3.164	7.198	6.036	0.605	3.516	1.476	8.292	nan	5.910	0.192	9.435	9.571	9.931	nan	12.421	11.059	10.813	6.916	20.566	21.697	5.537	6.497	10.683	15.885	10.940	11.259	6.728	9.049	9.195	10.936	9.429	7.547	4.245	2.310	6.067	6.521	1.615	5.516	7.198	8.292	2.340	2.724	3.076	3.100
7585	chr8	6670207	6699646	+	0	NA	intron (NM_207411, intron 2 of 7)	intron (NM_207411, intron 2 of 7)	-8150	NR_045217	100652791	Hs.369771	NR_045217	ENSG00000245857	GS1-24F4.2	-	uncharacterized LOC100652791	ncRNA	0.642	1.193	1.277	0.584	1.351	0.660	1.137	0.092	0.076	0.747	0.280	1.841	0.828	0.419	0.122	0.710	0.786	0.713	0.934	2.158	2.067	2.703	0.894	0.358	0.419	0.567	0.910	0.935	1.316	nan	1.097	0.319	0.440	0.443	0.541	0.302	0.424	4.337	1.894	1.525	0.550	0.061	0.210	1.137	1.841	0.062	2.127	0.164	0.076
2372	chr13	92977195	92985278	+	0	NA	intron (NM_004466, intron 7 of 7)	intron (NM_004466, intron 7 of 7)	23224	NR_120382	100873970	Hs.567269	NR_120382		GPC5-AS2	-	GPC5 antisense RNA 2	ncRNA	1.033	1.035	1.014	0.615	0.494	0.240	0.268	0.082	0.020	0.156	0.103	1.228	0.286	0.013	0.080	0.516	0.359	0.217	0.205	1.790	2.585	2.343	0.523	0.126	0.136	0.149	0.266	11.151	5.731	1.232	0.857	0.225	0.304	0.555	0.538	0.740	1.601	0.346	0.192	0.035	0.319	0.105	0.203	0.268	1.228	0.059	0.534		0.168
4630	chr2	182472520	182525345	+	0	NA	intron (NM_001030311, intron 1 of 13)	intron (NM_001030311, intron 1 of 13)	22902	NM_001160277	375298	Hs.732358	NM_201548	ENSG00000188452	CERKL	RP26	ceramide kinase like	protein-coding	2.685	1.083	1.476	0.122	0.991	0.468	0.273	0.084	0.092	0.178	0.169	0.210	0.363	0.029	0.077	0.322	0.199	0.181	0.224	0.238	0.295	0.958	0.232	0.352	0.333	nan	6.355	0.680	0.719	11.052	11.829	0.127	0.212	2.449	2.165	1.406	nan	0.614	0.431	0.219	0.041	0.871	0.183	0.273	0.210	0.777	0.039	0.051	1.527
2945	chr15	72765182	72768598	+	0	NA	promoter-TSS (NR_135678)	promoter-TSS (NR_135678)	223	NM_005744	25820	Hs.268787	NM_005744	ENSG00000166233	ARIH1	ARI|HARI|HHARI|UBCH7BP	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	6.948	6.905	6.640	5.191	10.280	4.412	7.276	5.640	0.565	4.436	1.771	8.955	16.454	5.136	0.123	8.653	10.263	12.618	16.404	12.534	11.927	10.138	7.963	19.415	20.900	7.011	8.581	9.564	17.077	15.914	18.341	6.231	10.642	6.600	5.630	11.854	8.656	4.412	2.466	3.557	6.235	0.582	2.899	7.276	8.955	1.653	5.426	2.573	1.839
4673	chr2	204442079	204450975	+	0	NA	Intergenic	AluSc5|SINE|Alu	-46468	NM_001329728	65059	Hs.471162	NM_025252	ENSG00000173166	RAPH1	ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0.997	3.486	1.694	1.554	0.422	0.235	0.160	0.175	0.038	0.072	0.102	1.233	9.153	0.036	0.051	0.507	0.531	1.602	5.285	0.393	0.420	0.609	0.144	4.027	3.883	0.575	0.763	6.118	11.306	0.586	0.302	1.709	3.303	0.056	0.034	0.555	1.261	0.393	0.533	1.275	0.195		0.339	0.160	1.233	0.051	0.080	3.215	0.153
6533	chr5	162883939	162890790	+	0	NA	promoter-TSS (NM_001142557)	promoter-TSS (NM_001142557)	-153	NM_012485	3161	Hs.740467	NM_012484	ENSG00000072571	HMMR	CD168|IHABP|RHAMM	hyaluronan mediated motility receptor	protein-coding	nan	3.776	2.396	3.710	5.852	3.512	1.399	2.095	0.585	2.178	1.530	5.697	12.167	6.024	0.262	4.191	4.241	7.287	10.915	8.128	6.599	6.468	2.916	8.332	8.526	6.210	6.334	6.371	9.238	9.375	10.111	1.994	3.850	8.333	9.670	6.709	7.070	2.285	1.274	2.998	4.776	1.763	2.767	1.399	5.697	0.807	2.707	1.837	2.730
577	chr1	155558152	155581228	+	0	NA	Intergenic	LTR5_Hs|LTR|ERVK	-10271	NR_046295	55154	Hs.656547	NM_018116	ENSG00000125459	MSTO1	LST005|MST	misato 1, mitochondrial distribution and morphology regulator	protein-coding	nan	nan	1.518	0.577	0.718	0.348	1.216	0.402	0.194	0.414	0.383	0.519	2.553	0.432	0.140	0.926	0.964	1.046	2.066	1.487	nan	3.012	1.262	0.715	0.819	1.031	1.526	1.101	1.983	1.259	1.095	1.300	1.654	0.796	0.862	2.136	4.163	0.978	0.618	0.466	1.173	0.115	0.310	1.216	0.519	0.384	0.693	0.449	1.509
3511	chr17	66504204	66511785	+	0	NA	promoter-TSS (NM_212471)	promoter-TSS (NM_212471)	73	NM_212471	5573	Hs.280342	NM_002734	ENSG00000108946	PRKAR1A	ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1	protein kinase cAMP-dependent type I regulatory subunit alpha	protein-coding	4.991	nan	6.980	7.454	7.795	4.240	3.308	2.401	0.187	4.229	1.932	5.292	13.135	3.135	0.109	4.168	5.380	4.050	5.075	9.130	7.843	5.558	2.973	5.055	5.367	2.433	nan	13.631	17.280	6.183	5.655	2.000	4.547	6.357	5.871	3.232	3.580	5.152	2.348	1.519	4.209	1.134	2.274	3.308	5.292	1.194	3.744	1.609	0.738
7684	chr8	58440603	58460789	+	0	NA	Intergenic	Intergenic	194350	NR_125818	101929488	Hs.407557	NR_125818	ENSG00000253871	LOC101929488	-	uncharacterized LOC101929488	ncRNA	0.777	nan	0.782	0.048	0.357	0.236	0.215	0.168	0.104	1.140	0.439	0.036	0.418	0.047	0.122	0.395	0.342	0.654	0.511	0.478	0.551	1.962	0.939	0.140	0.133	0.254	nan	0.097	0.127	0.494	0.262	0.218	0.326	0.253	0.292	0.195	0.488	4.264	1.990	0.011	0.035	0.010	0.090	0.215	0.036	0.005	0.744	0.086	0.277
8265	chr9	126523496	126541278	+	0	NA	intron (NM_024820, intron 3 of 20)	intron (NM_024820, intron 3 of 20)	160030	NM_020946	57706	Hs.744995	NM_020946	ENSG00000119522	DENND1A	FAM31A|KIAA1608	DENN domain containing 1A	protein-coding	nan	nan	1.413	0.224	0.391	0.223	0.159	0.263	0.090	0.187	0.200	0.175	nan	0.120	0.089	0.787	0.384	1.065	0.710	0.374	0.527	0.249	0.134	0.969	0.826	4.036	nan	0.432	0.453	2.317	1.498	0.227	0.425	0.632	0.698	1.287	2.683	nan	0.617	0.029	0.035	0.237	0.045	0.159	0.175	0.316	0.080	0.250	0.824
7305	chr7	65951611	65971923	+	0	NA	Intergenic	AluY|SINE|Alu	3089	NR_134571	100289098	Hs.662276	NR_134570	ENSG00000237310	GS1-124K5.4	-	uncharacterized LOC100289098	ncRNA	nan	nan	nan	1.173	0.957	0.467	1.027	0.613	0.166	1.056	0.699	1.407	1.588	0.727	0.180	1.460	1.427	1.103	1.559	1.576	1.538	3.937	2.034	2.174	2.330	0.904	1.075	1.696	2.183	1.310	1.127	0.838	1.200	1.291	1.349	0.965	1.197	3.085	1.490	0.268	0.855	0.202	0.464	1.027	1.407	0.333	1.108	0.312	0.206
4843	chr20	9041185	9071027	+	0	NA	intron (NM_001172646, intron 1 of 37)	intron (NM_001172646, intron 1 of 37)	6405	NM_001172646	5332	Hs.472101	NM_000933	ENSG00000101333	PLCB4	ARCND2|PI-PLC	phospholipase C beta 4	protein-coding	1.038	1.142	0.875	1.216	0.928	0.447	0.653	0.619	0.135	1.571	0.958	0.775	3.130	0.294	0.117	0.801	1.250	0.498	0.639	2.071	2.023	3.249	1.039	0.667	0.597	2.000	2.410	2.652	2.548	2.534	2.429	0.474	1.203	4.022	3.823	0.380	0.651	1.121	0.805	0.093	0.887	1.415	0.527	0.653	0.775	0.437	0.330	0.408	0.281
643	chr1	166939856	166951647	+	0	NA	intron (NM_001286378, intron 1 of 12)	L2c|LINE|L2	932	NM_001286378	84944	Hs.651245	NM_032858	ENSG00000143194	MAEL	CT128|SPATA35	maelstrom spermatogenic transposon silencer	protein-coding	0.874	nan	1.262	0.424	2.414	1.099	1.283	0.121	0.190	0.526	0.425	1.277	1.701	0.128	0.089	0.486	0.492	0.568	0.719	6.713	nan	5.988	1.507	0.198	0.192	0.736	1.253	0.843	nan	0.401	0.248	0.517	0.851	0.348	0.278	0.257	0.619	3.307	1.654	0.085	2.526	0.049	0.082	1.283	1.277	0.066	0.063	0.193	0.096
6528	chr5	158632309	158639543	+	0	NA	promoter-TSS (NM_001199381)	promoter-TSS (NM_001199381)	637	NM_001199383	153830	Hs.349306	NM_144726	ENSG00000145860	RNF145	-	ring finger protein 145	protein-coding	4.511	nan	2.307	2.370	3.976	1.973	1.522	2.494	0.209	2.077	1.018	2.169	4.646	2.549	0.111	2.884	3.242	8.337	12.178	3.689	3.106	2.858	0.947	2.387	2.572	3.590	4.479	2.181	2.965	8.574	9.913	1.873	3.666	6.403	6.276	5.231	8.878	1.966	1.197	1.131	3.528	1.690	2.296	1.522	2.169	1.085	1.751	1.712	3.962
8055	chr9	13852512	13860962	+	0	NA	Intergenic	Intergenic	-71233	NR_038194	100113404	Hs.149786	NR_038194	ENSG00000205636	LINC00583	C9orf146	long intergenic non-protein coding RNA 583	ncRNA	nan	nan	0.723	0.136	0.442	0.228	0.222	0.093	0.038	0.222	0.213	0.328	0.480	0.052	0.076	0.265	0.140	9.453	5.166	0.373	0.386	0.464	0.215	0.149	0.091	3.425	5.099	0.446	0.356	0.252	0.115	0.133	0.230	0.171	0.254	0.155	0.365	0.957	0.864	0.273	0.085		0.067	0.222	0.328	0.034	0.036	0.101	0.029
6193	chr5	16567729	16599535	+	0	NA	intron (NM_001034850, intron 1 of 8)	AT_rich|Low_complexity|Low_complexity	-32403	NR_109946	101929524	Hs.734029	NR_109946	ENSG00000246214	LOC101929524	-	uncharacterized LOC101929524	ncRNA	nan	nan	nan	2.727	1.518	0.680	0.504	0.289	0.168	0.636	0.533	1.246	nan	0.078	0.114	0.414	0.305	0.374	0.535	1.274	1.134	2.846	0.845	0.147	0.146	nan	3.120	1.065	1.277	0.677	0.484	0.173	0.243	3.296	4.620	0.193	nan	2.040	1.398	0.089	0.067	0.899	0.512	0.504	1.246	0.129	1.000	0.037	0.055
1120	chr10	62146408	62161238	+	0	NA	intron (NM_001204403, intron 2 of 43)	intron (NM_001204403, intron 2 of 43)	-4081	NM_001320874	288	Hs.499725	NM_001149	ENSG00000151150	ANK3	ANKYRIN-G|MRT37	ankyrin 3	protein-coding	0.851	nan	1.018	0.364	0.630	0.272	0.140	0.264	0.130	0.696	0.400	0.159	2.116	0.052	0.080	0.313	0.242	0.288	0.309	0.437	0.555	0.732	0.541	0.293	0.246	2.156	2.637	0.186	0.473	4.246	5.441	0.122	0.144	0.669	0.443	0.380	nan	1.154	0.790	0.008	0.132	0.172	0.134	0.140	0.159	0.300	0.157	0.007	0.325
5402	chr3	73545745	73578596	+	0	NA	intron (NM_015009, intron 3 of 9)	intron (NM_015009, intron 3 of 9)	-8303	NR_121660	101927296	Hs.662049	NR_121660		LOC101927296	-	uncharacterized LOC101927296	ncRNA	0.790	0.586	0.872	0.235	0.908	0.572	0.137	0.046	0.040	0.589	0.346	0.643	0.617	0.026	0.068	0.875	0.939	4.782	nan	0.387	0.497	1.410	1.320	0.138	0.127	0.470	0.635	0.926	1.169	0.345	0.154	2.325	3.330	0.629	0.723	0.463	nan	1.433	0.683	0.012	0.143	0.099	0.147	0.137	0.643	0.009	0.474	3.283	0.322
1187	chr10	100119955	100137657	+	0	NA	Intergenic	Intergenic	26258	NR_031619	100302133		NR_031619	ENSG00000119943	MIR1287	MIRN1287|hsa-mir-1287|mir-1287	microRNA 1287	ncRNA	nan	nan	0.659	0.895	0.459	0.226	0.243	0.154	0.063	0.093	0.061	0.595	0.750	0.037	0.099	0.466	0.597	0.255	0.335	0.376	0.508	1.760	0.556	0.164	0.178	0.289	nan	6.241	6.027	0.156	0.097	0.211	0.395	0.060	0.086	0.171	nan	0.279	0.246	0.046	0.442	0.005	0.026	0.243	0.595	0.188	0.779	0.106	0.042
7474	chr7	129410608	129422847	+	0	NA	Intergenic	AluSq|SINE|Alu	-1873	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA	4.255	1.083	6.329	1.617	2.138	1.061	1.008	0.133	0.113	0.616	0.355	5.588	2.692	1.371	0.127	3.989	4.617	1.825	3.023	3.728	2.463	2.955	0.846	3.673	3.547	0.824	1.151	1.488	2.898	3.093	4.040	3.735	6.285	1.186	1.045	2.783	3.744	1.464	0.973	2.465	5.027	0.204	4.308	1.008	5.588	2.153	0.838	2.992	0.920
2092	chr12	97374656	97418718	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	95443	NM_001135175	121441	Hs.270084	NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding	0.810	0.859	0.734	0.325	1.183	0.612	0.241	0.198	0.128	0.881	0.662	1.578	nan	0.074	0.104	0.494	0.482	0.292	0.249	1.180	1.437	2.055	0.767	0.268	0.283	0.562	nan	1.196	nan	0.455	0.203	0.173	0.242	0.941	0.532	0.245	0.317	5.760	2.945	1.693	0.837	0.156	0.032	0.241	1.578	0.160	0.346	0.053	0.093
1251	chr10	126421709	126433765	+	0	NA	intron (NM_014661, intron 1 of 4)	intron (NM_014661, intron 1 of 4)	5193	NM_014661	9679	Hs.129195	NM_014661	ENSG00000189319	FAM53B	KIAA0140|bA12J10.2|smp	family with sequence similarity 53 member B	protein-coding	nan	0.799	3.443	0.569	6.763	3.938	0.286	0.298	0.107	0.753	0.519	1.418	1.852	0.638	0.056	1.382	2.025	1.424	1.975	0.418	0.424	1.891	0.535	1.222	1.129	1.129	1.754	2.688	4.145	0.331	0.500	0.594	1.485	0.953	0.585	0.550	0.592	1.628	1.003	1.535	1.849	0.185	0.085	0.286	1.418	0.242	0.824	0.345	0.092
3904	chr18	74549834	74574697	+	0	NA	intron (NM_001306089, intron 2 of 30)	intron (NM_001306089, intron 2 of 30)	26149	NM_007345	7776	Hs.719137	NM_007345	ENSG00000130856	ZNF236	ZNF236A|ZNF236B	zinc finger protein 236	protein-coding	nan	nan	0.704	0.189	0.681	0.299	0.385	0.118	0.129	0.163	0.168	4.131	0.447	0.119	0.098	0.428	0.395	1.315	0.847	0.726	nan	0.951	0.364	0.522	0.519	0.330	0.479	1.174	nan	0.435	0.243	0.166	0.325	0.193	0.255	0.232	0.479	0.716	0.461	0.107	0.157	0.104	0.143	0.385	4.131	0.020	0.033	0.052	0.096
879	chr1	222883802	222887847	+	0	NA	promoter-TSS (NM_022831)	promoter-TSS (NM_022831)	40	NM_022831	64853	Hs.156625	NM_022831	ENSG00000186063	AIDA	C1orf80	axin interactor, dorsalization associated	protein-coding	7.154	nan	5.998	10.151	8.543	4.163	5.129	4.969	0.549	4.938	2.023	7.136	17.213	5.030	0.124	8.535	9.862	11.780	16.118	14.312	nan	10.976	5.009	20.704	21.935	4.283	5.545	10.283	14.105	7.078	7.092	1.835	3.645	7.072	9.195	5.876	8.200	4.015	1.804	5.709	4.154	1.926	3.400	5.129	7.136	1.250	3.835	1.989	2.648
5452	chr3	107862328	107877813	+	0	NA	Intergenic	Intergenic	25402	NR_110028	101929623	Hs.570653	NR_110028	ENSG00000271856	LINC01215	-	long intergenic non-protein coding RNA 1215	ncRNA	nan	nan	0.748	0.085	0.710	0.470	0.172	0.160	0.168	0.285	0.252	0.637	0.226	0.016	0.065	0.343	0.201	0.416	0.604	0.380	0.487	4.926	1.300	0.236	0.243	0.346	0.629	0.282	0.329	0.716	0.425	0.117	0.177	0.197	0.203	0.468	0.908	1.336	0.803	0.077	0.070	0.074	0.083	0.172	0.637		0.026	0.043	0.158
3899	chr18	74197939	74209857	+	0	NA	intron (NR_136504, intron 1 of 1)	CpG	290	NR_136504	101927989	Hs.665186	NR_136504	ENSG00000265778	LOC101927989	-	uncharacterized LOC101927989	ncRNA	nan	nan	1.408	2.722	3.782	2.131	4.105	0.025	0.027	2.702	1.212	7.220	7.793	0.745	0.083	2.358	3.275	4.367	4.999	6.460	nan	7.781	4.023	4.319	4.142	0.100	0.230	6.357	nan	3.645	3.545	0.980	2.816	5.313	3.891	3.257	4.501	1.945	1.213	0.206	2.415	0.848	2.291	4.105	7.220	0.861	2.209	1.682	1.889
3104	chr16	30005206	30017611	+	0	NA	intron (NR_134855, intron 3 of 10)	intron (NR_134855, intron 3 of 10)	3878	NM_001304563	283899	Hs.434864	NM_173618	ENSG00000169592	INO80E	CCDC95	INO80 complex subunit E	protein-coding	2.703	1.903	nan	5.117	4.434	2.035	2.539	0.718	0.169	1.007	0.474	2.973	6.563	1.032	0.067	3.229	2.810	2.110	2.950	5.186	4.650	nan	3.217	4.062	4.389	2.538	3.309	7.188	8.421	3.924	3.489	2.781	3.229	2.985	3.523	2.007	2.386	2.607	1.371	3.886	2.197	0.627	1.019	2.539	2.973	0.874	1.924	1.349	1.097
3961	chr19	10611064	10629395	+	0	NA	Intergenic	AluSz6|SINE|Alu	-6175	NM_203500	9817	Hs.465870	NM_012289	ENSG00000079999	KEAP1	INrf2|KLHL19	kelch like ECH associated protein 1	protein-coding	2.668	1.911	1.550	2.608	2.343	1.128	2.145	0.966	0.283	1.120	0.621	2.664	4.221	1.928	0.110	2.619	2.415	2.261	3.611	4.660	4.201	4.147	1.978	5.625	5.994	2.310	2.883	4.280	6.026	4.388	4.189	1.399	1.889	2.441	2.832	2.540	2.111	2.030	1.130	2.645	1.272	0.562	1.038	2.145	2.664	0.875	1.876	0.548	1.034
1444	chr11	61591931	61604416	+	0	NA	intron (NM_004265, intron 1 of 11)	intron (NM_004265, intron 1 of 11)	2668	NM_004265	9415	Hs.502745	NM_004265	ENSG00000134824	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding	nan	2.539	2.130	3.826	9.409	5.253	3.254	2.436	0.338	2.394	1.498	4.223	5.362	2.757	0.158	6.242	8.211	2.895	4.050	12.748	10.928	4.691	1.934	3.423	3.721	2.994	3.653	5.122	6.446	4.067	4.722	4.124	8.678	3.110	2.645	2.329	3.509	2.401	1.465	6.291	3.667	1.217	1.704	3.254	4.223	1.363	1.713	3.927	1.640
2600	chr14	56145641	56176246	+	0	NA	Intergenic	Intergenic	-72020	NR_004844	645683	Hs.663461	NR_004844	ENSG00000177350	RPL13AP3	RPL13A_11_1370	ribosomal protein L13a pseudogene 3	pseudo	nan	nan	0.862	0.462	0.539	0.253	0.526	0.191	0.105	0.261	0.167	0.372	1.162	0.064	0.117	0.556	0.309	2.151	1.573	0.611	0.607	1.427	0.734	9.519	10.201	0.379	0.681	1.015	1.220	0.742	0.437	0.694	1.145	0.547	0.608	0.289	0.667	nan	0.748	0.750	0.452	0.159	0.107	0.526	0.372	0.022	0.412	0.630	0.137
5749	chr3	184427708	184437058	+	0	NA	Intergenic	Intergenic	-2547	NM_022149	64110	Hs.306123	NM_022149	ENSG00000177383	MAGEF1	-	MAGE family member F1	protein-coding	5.130	2.713	2.098	3.189	3.864	1.980	3.344	2.231	0.383	1.280	0.979	3.335	5.524	1.461	0.119	3.637	4.817	2.544	3.394	4.569	4.215	4.848	2.529	4.029	4.154	4.095	5.089	7.784	10.154	5.777	5.052	2.897	5.480	2.072	2.073	3.026	3.950	1.732	1.057	2.226	0.763	0.421	3.216	3.344	3.335	0.903	1.216	2.515	1.692
4616	chr2	178025920	178046827	+	0	NA	Intergenic	LTR54B|LTR|ERV1	-41049	NM_001330247	220988	Hs.516539	NM_194247	ENSG00000170144	HNRNPA3	2610510D13Rik|D10S102|FBRNP|HNRPA3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	2.028	2.703	1.967	0.623	1.600	1.037	0.910	0.532	0.122	0.411	0.224	0.995	4.942	0.455	0.094	0.961	1.225	2.786	5.489	1.342	1.555	2.796	0.750	0.904	0.869	2.586	3.116	4.066	3.971	1.753	1.681	2.407	4.241	2.301	2.756	0.607	1.237	1.344	0.758	2.582	0.408	0.606	0.209	0.910	0.995	0.237	0.953	4.879	0.127
1828	chr12	11307763	11345433	+	0	NA	3' UTR (NM_001271592, exon 1 of 1)	3' UTR (NM_001271592, exon 1 of 1)	-2374	NR_037918	100533464	Hs.732031	NR_037918	ENSG00000275778	PRH1-PRR4	PRH1	PRH1-PRR4 readthrough	ncRNA	1.321	0.776	1.384	1.474	0.666	0.397	0.545	0.198	0.051	0.590	0.428	0.676	1.651	0.524	0.126	0.536	0.523	1.504	1.436	nan	1.734	2.085	1.135	20.867	21.432	1.152	1.330	1.452	2.010	1.270	1.074	0.443	0.842	0.426	0.540	1.795	3.349	0.526	0.316	0.951	0.542	0.092	0.360	0.545	0.676	0.080	0.153	0.236	0.713
3006	chr15	101250985	101274362	+	0	NA	Intergenic	Intergenic	119918	NM_198243	140460	Hs.31845	NM_024708	ENSG00000183475	ASB7	-	ankyrin repeat and SOCS box containing 7	protein-coding	0.492	nan	0.641	0.034	0.144	0.027	0.429	0.238	0.069	0.089	0.115	0.077	nan	0.032	0.059	0.377	0.202	1.575	7.730	0.347	0.282	0.190	0.067	0.280	0.267	0.100	0.178	0.107	0.078	0.508	0.345	0.160	0.230	0.102	0.128	0.299	0.366	0.316	0.325	0.565	0.235	0.025	0.034	0.429	0.077	0.054	0.922	0.046	0.095
306	chr1	53743908	53795229	+	0	NA	intron (NM_001018054, intron 2 of 17)	intron (NM_001018054, intron 2 of 17)	24253	NM_004631	7804	Hs.280387	NM_004631	ENSG00000157193	LRP8	APOER2|HSZ75190|LRP-8|MCI1	LDL receptor related protein 8	protein-coding	2.079	1.108	2.232	0.427	0.469	0.237	1.246	0.590	0.091	0.284	0.219	0.296	0.925	0.311	0.088	1.543	2.631	0.801	1.356	1.396	1.259	1.335	0.440	1.985	2.093	2.328	3.395	1.079	2.179	1.891	1.959	0.717	1.013	0.691	0.744	2.287	nan	1.025	0.656	0.370	0.426	0.230	0.423	1.246	0.296	0.564	0.422	0.419	1.899
70	chr1	9647752	9663804	+	0	NA	intron (NM_001010866, intron 1 of 5)	intron (NM_001010866, intron 1 of 5)	6846	NM_001010866	199953	Hs.632365	NM_001010866	ENSG00000188807	TMEM201	Ima1|NET5|SAMP1	transmembrane protein 201	protein-coding	1.813	nan	1.675	7.491	1.002	0.550	0.876	0.402	0.181	0.714	0.256	0.478	1.943	0.431	0.088	0.995	1.895	1.005	1.433	2.575	2.245	1.723	0.459	1.200	1.045	1.067	nan	nan	5.060	nan	2.330	0.510	1.227	0.586	0.445	1.962	3.081	0.922	0.591	0.566	2.081	0.143	0.308	0.876	0.478	0.510	0.551	0.480	0.702
7095	chr6	164779737	164786093	+	0	NA	Intergenic	L3b|LINE|CR1	452637	NR_131926	105378111		NR_131926		MEAT6	-	melanoma-associated transcript 6	ncRNA	0.627	nan	0.738	3.816	0.662	0.303	0.884	0.060	0.051	0.917	0.593	7.400	0.781		0.082	0.354	0.245	0.158	0.220	6.266	7.773	7.757	2.784	0.174	0.080	0.231	0.167	1.596	2.643	nan	0.198	0.099	0.094	1.678	1.086	0.088	0.195	2.814	1.111	0.043	0.014	0.268		0.884	7.400		0.110	0.055	0.020
166	chr1	27915710	27933860	+	0	NA	intron (NM_001029882, intron 1 of 6)	intron (NM_001029882, intron 1 of 6)	5220	NM_001029882	27245	Hs.469280	NM_001029882	ENSG00000126705	AHDC1	MRD25	AT-hook DNA binding motif containing 1	protein-coding	2.971	1.538	nan	1.180	1.830	0.963	1.841	0.580	0.116	0.380	0.275	0.787	4.139	0.627	0.100	1.102	2.199	0.640	0.931	6.052	6.070	0.909	0.341	1.283	1.413	2.290	3.429	1.962	2.551	2.705	2.280	0.715	1.227	0.684	0.627	2.863	4.767	1.123	0.632	1.631	1.012	0.279	2.313	1.841	0.787	1.213	0.568	0.429	1.131
1578	chr11	92790429	92823996	+	0	NA	Intergenic	LTR39|LTR|ERV1	104423	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding	0.700	nan	0.563	0.317	3.455	1.807	0.433	0.078	0.033	0.093	0.137	0.218	11.178	0.045	0.110	0.848	0.591	0.236	nan	0.524	0.715	0.378	0.093	0.585	0.577	2.596	2.991	0.792	0.518	0.379	0.166	0.281	0.428	0.992	1.463	0.176	nan	1.302	0.786	4.698	0.334	0.168	0.076	0.433	0.218	0.017	0.423	0.104	0.081
4352	chr2	53652254	53713144	+	0	NA	Intergenic	Intergenic	-312221	NM_001346127	494143	Hs.585944	NM_001008708	ENSG00000143942	CHAC2	-	ChaC cation transport regulator homolog 2	protein-coding	6.250	nan	6.070	0.232	0.223	0.140	0.252	0.132	0.069	0.164	0.170	0.145	0.336	0.052	0.122	0.350	0.216	0.311	0.297	0.550	0.596	0.726	0.217	0.381	0.372	0.676	0.958	0.943	0.651	0.481	0.267	0.172	0.289	8.665	7.853	0.444	0.921	0.620	0.552	0.213	0.144	1.158	0.084	0.252	0.145	0.055	1.015	0.063	0.305
6728	chr6	34452185	34464083	+	0	NA	intron (NM_020804, intron 1 of 9)	AluJo|SINE|Alu	24296	NM_020804	29993	Hs.520087	NM_020804	ENSG00000124507	PACSIN1	SDPI	protein kinase C and casein kinase substrate in neurons 1	protein-coding	nan	0.975	nan	0.361	0.909	0.426	1.174	0.146	0.101	1.465	0.619	0.385	0.637	0.113	0.106	0.468	0.450	0.206	nan	nan	0.713	4.505	1.215	0.335	0.403	0.518	0.804	1.981	3.174	0.757	0.576	0.176	0.251	1.218	1.645	1.105	1.753	3.092	1.627	0.164	0.188	0.394	0.140	1.174	0.385	0.068	0.795	0.016	0.351
466	chr1	116847794	116880282	+	0	NA	Intergenic	MIRc|SINE|MIR	-51757	NM_000701	476	Hs.371889	NM_000701	ENSG00000163399	ATP1A1	-	ATPase Na+/K+ transporting subunit alpha 1	protein-coding	nan	1.189	1.480	0.928	0.611	0.324	0.363	0.151	0.075	0.163	0.117	0.724	1.049	0.074	0.112	1.006	1.221	4.376	5.539	0.652	nan	1.473	0.503	0.430	0.500	0.409	0.688	3.191	2.443	0.518	0.286	3.536	5.765	0.440	0.355	0.381	0.851	0.834	0.589	0.573	0.208	0.085	0.896	0.363	0.724	0.107	0.349	4.993	0.141
134	chr1	22831596	22855547	+	0	NA	intron (NM_001330398, intron 10 of 15)	intron (NM_001330398, intron 10 of 15)	-46424	NM_020526	2046	Hs.283613	NM_020526	ENSG00000070886	EPHA8	EEK|EK3|HEK3	EPH receptor A8	protein-coding	1.034	0.826	nan	0.710	0.382	0.131	0.354	0.097	0.091	0.325	0.247	0.030	1.067	0.095	0.120	0.322	0.440	0.266	0.387	1.106	1.106	0.423	0.175	0.354	0.383	0.671	0.899	1.946	2.232	0.520	0.353	0.251	0.326	0.281	0.293	0.456	1.042	1.246	0.675	1.564	4.003	0.131	0.084	0.354	0.030	0.252	0.110	0.050	0.268
3290	chr17	16117396	16121700	+	0	NA	promoter-TSS (NM_004278)	promoter-TSS (NM_004278)	-674	NM_006311	9611	Hs.462323	NM_006311	ENSG00000141027	NCOR1	N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR	nuclear receptor corepressor 1	protein-coding	6.586	3.104	4.368	3.430	4.651	2.119	4.030	1.756	0.222	1.519	1.123	6.308	5.874	2.291	0.036	8.135	7.960	7.854	10.847	8.573	7.867	9.888	3.485	8.457	9.117	2.713	3.675	8.111	11.127	nan	11.894	2.893	5.878	3.815	3.638	9.101	8.959	2.350	0.984	2.249	2.910	0.797	2.891	4.030	6.308	1.996	11.190	1.611	3.417
4732	chr2	222250171	222263631	+	0	NA	Intergenic	L1ME3A|LINE|L1	180177	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding	nan	0.911	1.110	0.137	0.319	0.131	0.133	0.079	0.107	0.117	0.155	0.169	nan	0.024	0.112	0.432	0.275	0.234	0.332	0.184	0.263	0.158	0.088	0.239	0.296	3.826	3.959	0.365	nan	0.822	0.450	0.131	0.218	0.105	0.127	1.480	nan	0.361	0.377	0.050	0.066	0.064	0.047	0.133	0.169	0.311	0.038	0.044	1.378
7183	chr7	18392000	18399147	+	0	NA	intron (NM_001321896, intron 1 of 12)	L1MB8|LINE|L1	65858	NM_001321896	9734	Hs.196054	NM_014707	ENSG00000048052	HDAC9	HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding	nan	1.468	nan	0.165	0.384	0.237	0.285	0.996	0.112	0.539	0.498	0.131	0.830	1.187	0.162	nan	0.302	8.137	9.670	0.635	0.865	1.218	0.373	0.377	0.469	1.752	2.410	0.436	0.483	0.557	0.191	0.130	0.317	0.826	1.139	0.349	1.133	2.025	0.729	0.156	0.424	0.201	0.140	0.285	0.131	0.066	0.417	0.071	0.154
3717	chr18	30692020	30716141	+	0	NA	intron (NM_198995, intron 19 of 21)	intron (NM_198995, intron 19 of 21)	315965	NM_001308126	374864	Hs.115461	NM_198995	ENSG00000166960	CCDC178	C18orf34	coiled-coil domain containing 178	protein-coding	nan	1.151	0.854	1.154	4.311	2.190	0.874	0.044	0.081	0.756	0.397	3.720	0.650	0.039	0.083	0.426	0.269	0.282	0.387	2.253	3.129	2.756	1.427	0.157	0.133	0.110	0.181	nan	5.746	0.425	0.144	0.132	0.173	2.392	2.794	0.272	0.753	5.269	2.682	0.150	0.391	0.724	0.506	0.874	3.720	0.048	0.135	0.020	0.119
6782	chr6	44267905	44302550	+	0	NA	Intergenic	MER58D|DNA|hAT-Charlie	-4164	NM_020745	57505	Hs.158381	NM_020745	ENSG00000124608	AARS2	AARSL|COXPD8|LKENP|MT-ALARS|MTALARS	alanyl-tRNA synthetase 2, mitochondrial	protein-coding	1.403	1.121	1.387	0.333	0.475	0.231	0.503	0.231	0.099	0.186	0.160	0.376	0.707	0.251	0.106	0.705	0.642	0.481	0.663	0.686	0.813	1.247	0.560	0.643	0.691	0.423	0.649	0.751	nan	1.321	1.277	0.332	0.507	0.346	0.347	1.323	3.547	0.616	0.548	0.118	0.418	0.058	0.160	0.503	0.376	0.126	0.135	0.069	1.894
8192	chr9	91967117	91978653	+	0	NA	intron (NM_024077, intron 15 of 16)	intron (NM_024077, intron 15 of 16)	39119	NM_001282690	79048	Hs.59804	NM_024077	ENSG00000187742	SECISBP2	SBP2	SECIS binding protein 2	protein-coding	0.853	nan	1.779	1.199	0.243	0.194	0.320	0.097	0.126	0.553	0.471	0.352	1.270	0.103	0.073	0.318	0.247	4.483	nan	1.053	1.028	3.348	0.815	0.279	0.296	1.215	1.166	3.573	3.418	0.196	0.209	0.215	0.247	0.467	0.303	0.311	0.694	3.945	2.055	1.018	0.132	0.033	0.089	0.320	0.352	0.178	0.220	0.035	0.140
2196	chr12	124607486	124620548	+	0	NA	intron (NM_001204299, intron 2 of 4)	AluJb|SINE|Alu	156255	NM_152437	144348	Hs.524828	NM_152437	ENSG00000179195	ZNF664	ZFOC1|ZNF176	zinc finger protein 664	protein-coding	0.992	1.366	0.770	1.073	0.787	0.283	1.096	0.069	0.197	0.804	0.680	1.615	2.038	0.092	0.173	0.350	0.419	0.246	0.333	1.469	1.527	nan	2.143	0.220	0.238	0.385	0.614	3.095	3.728	0.555	0.330	0.413	0.579	1.054	1.214	0.281	0.711	2.145	1.133	0.033	0.790	0.289	0.054	1.096	1.615	0.066	1.266	0.464	0.058
1323	chr11	15727598	15742049	+	0	NA	Intergenic	MSTB|LTR|ERVL-MaLR	69392	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding	0.811	nan	1.292	1.644	0.670	0.366	0.378	0.077	0.100	0.217	0.166	1.274	1.186	0.030	0.066	nan	0.410	0.188	0.401	1.751	1.891	0.152	0.076	0.388	0.367	0.266	nan	2.160	2.260	0.759	0.646	0.210	0.263	0.327	0.317	0.206	0.317	1.330	nan	5.026	0.614	0.039	0.028	0.378	1.274	0.033	0.944	0.088	0.318
7296	chr7	56172321	56184880	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-4277	NM_001320327	51142	Hs.389996	NM_016139	ENSG00000106153	CHCHD2	C7orf17|MNRR1|NS2TP|PARK22	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding	nan	2.068	1.462	1.096	1.083	0.511	0.681	0.582	0.255	0.737	0.442	1.038	1.979	0.985	0.177	1.540	1.553	1.472	2.513	1.594	1.513	2.346	0.944	2.801	3.020	1.249	1.391	5.907	7.263	1.648	1.658	0.860	1.266	1.601	1.824	1.292	1.406	1.148	0.763	0.701	0.347	0.311	0.412	0.681	1.038	0.241	0.766	0.337	0.372
1455	chr11	63674273	63707513	+	0	NA	Intergenic	Intergenic	-6577	NM_173587	283248	Hs.98788	NM_173587	ENSG00000167771	RCOR2	-	REST corepressor 2	protein-coding	nan	1.190	1.377	2.036	0.820	0.448	2.101	0.360	0.170	0.193	0.181	1.062	2.205	1.376	0.103	3.867	5.230	0.748	1.111	3.385	2.992	1.974	0.697	1.525	1.440	1.291	1.835	4.080	4.881	3.526	3.812	1.164	1.747	1.973	1.520	2.217	4.348	0.802	0.574	2.184	0.916	0.777	1.623	2.101	1.062	1.281	1.540	0.771	1.972
6868	chr6	88971298	88979858	+	0	NA	Intergenic	Intergenic	-99811	NM_001160258	1268	Hs.75110	NM_016083	ENSG00000118432	CNR1	CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR	cannabinoid receptor 1	protein-coding	0.937	0.832	nan	0.245	0.311	0.093	0.196	0.070	0.056	0.127	0.155	0.294	0.323	0.076	0.072	0.475	0.401	0.155	0.143	0.538	0.727	0.176	0.121	0.200	0.199	4.870	5.152	0.486	0.395	0.480	0.287	0.195	0.208	0.225	0.144	0.190	0.433	0.289	0.389	0.006	0.074	0.048	0.177	0.196	0.294	0.103	0.036	0.011	0.072
4658	chr2	198296199	198301733	+	0	NA	intron (NM_001308824, intron 1 of 3)	intron (NM_001308824, intron 1 of 3)	851	NM_001005526	23451	Hs.632554	NM_012433	ENSG00000115524	SF3B1	Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155	splicing factor 3b subunit 1	protein-coding	4.809	nan	3.462	4.472	3.701	1.855	2.219	2.844	0.234	1.667	1.191	3.162	7.255	2.632	0.100	5.004	4.738	6.678	9.473	4.868	5.145	6.231	3.576	17.322	19.713	3.985	5.060	6.625	9.816	7.633	7.331	4.588	8.284	2.388	3.041	7.455	6.856	2.453	1.528	2.273	1.546	0.292	1.218	2.219	3.162	1.120	2.221	1.756	2.398
5638	chr3	166827336	166830398	+	0	NA	Intergenic	Intergenic	212396	NR_135545	105374194		NR_135545		LOC105374194	inv3q26.1	uncharacterized LOC105374194	ncRNA	1.291	1.638	0.766	0.218	0.328	0.159	2.281	0.147	0.260	0.254	0.184	0.154	0.518		0.044	0.324	0.246	0.277	0.342	0.534	0.432	16.672	15.895	0.211	0.138	0.740	1.615	nan	0.432	nan	0.298	0.137	0.248	0.272	0.301	0.465	0.789	0.483	0.606		0.057	0.063	0.026	2.281	0.154	0.064	0.067	0.032	0.200
3560	chr17	74125404	74144429	+	0	NA	intron (NM_001454, intron 2 of 2)	intron (NM_001454, intron 2 of 2)	-1721	NR_040017	100507218	Hs.654866	NR_040017	ENSG00000267128	RNF157-AS1	-	RNF157 antisense RNA 1	ncRNA	1.684	1.650	1.722	1.775	1.973	1.029	0.725	0.146	0.164	1.142	0.533	1.468	3.444	0.127	0.110	1.226	2.045	0.749	1.244	1.220	1.433	5.145	1.287	0.909	0.911	nan	0.993	7.684	6.598	0.982	0.646	0.978	1.843	0.754	0.877	0.909	0.883	nan	0.677	1.715	0.717	0.161	1.506	0.725	1.468	0.328	0.260	1.157	0.231
1134	chr10	71604517	71612790	+	0	NA	intron (NM_080798, intron 3 of 34)	intron (NM_080798, intron 3 of 34)	47009	NM_080805	1305	Hs.695934	NM_005203	ENSG00000197467	COL13A1	CMS19|COLXIIIA1	collagen type XIII alpha 1 chain	protein-coding	0.763	nan	1.164	0.064	0.351	0.217	0.093	0.191	0.139	0.075	0.039	0.101	0.288	0.039	0.085	7.439	9.686	0.309	0.308	0.297	0.436	0.512	0.212	0.596	0.607	0.129	0.278	1.591	nan	0.846	0.873	5.303	9.328	0.035	0.096	0.225	nan	0.381	0.410	0.283	0.517		0.209	0.093	0.101	0.400	0.025	8.517	0.088
3853	chr18	57347775	57372695	+	0	NA	intron (NM_133459, intron 2 of 10)	(CA)n|Simple_repeat|Simple_repeat	4409	NM_133459	147372	Hs.34333	NM_133459	ENSG00000183287	CCBE1	HKLLS1	collagen and calcium binding EGF domains 1	protein-coding	nan	0.713	3.131	0.149	0.544	0.282	0.632	0.116	0.110	0.164	0.124	0.081	0.581	0.048	0.058	0.392	0.169	0.387	0.557	0.802	0.814	0.333	0.160	0.501	0.515	0.093	0.186	0.773	0.817	0.465	0.333	0.102	0.189	4.377	4.583	0.131	0.234	nan	1.550	0.027	0.342	1.232	0.137	0.632	0.081	0.132	0.073	0.028	0.045
4131	chr19	49651407	49662125	+	0	NA	exon (NM_002152, exon 1 of 6)	exon (NM_002152, exon 1 of 6)	1915	NM_002152	3270	Hs.436885	NM_002152	ENSG00000130528	HRC	-	histidine rich calcium binding protein	protein-coding	2.783	1.964	3.395	0.960	1.854	0.991	0.632	0.378	0.120	0.612	0.292	1.271	4.560	1.932	0.102	1.380	2.246	1.236	2.047	2.440	2.400	1.677	0.750	3.960	4.019	1.234	1.852	1.595	2.070	3.832	4.080	1.242	1.998	1.026	0.992	2.867	3.255	1.434	0.999	1.466	5.052	0.233	0.282	0.632	1.271	0.930	0.870	1.315	1.092
4455	chr2	105045589	105052851	+	0	NA	Intergenic	Intergenic	-1585	NR_015399	150568	Hs.107284	NR_015399	ENSG00000235597	LINC01102	-	long intergenic non-protein coding RNA 1102	ncRNA	0.525	nan	0.541	0.061	6.623	3.626	0.969	0.071	0.066	0.304	0.176	5.888	4.426	0.030	0.103	0.398	0.451	0.888	1.158	4.850	4.648	0.207	0.075	0.189	0.235	0.125	0.248	1.708	1.838	0.441	0.165	0.187	0.460	2.013	1.482	0.153	0.157	0.761	0.571	0.068	0.037	0.171	0.337	0.969	5.888		0.390	0.218	0.033
5201	chr22	23520876	23569053	+	0	NA	intron (NM_021574, intron 1 of 21)	L1MB3|LINE|L1	22412	NM_004327	613	Hs.517461	NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR, RhoGEF and GTPase activating protein	protein-coding	0.865	nan	2.047	1.269	0.615	0.352	0.637	0.203	0.083	0.335	0.269	3.586	3.096	0.205	0.088	0.631	1.007	0.598	0.869	3.799	3.842	1.025	0.257	1.023	0.962	0.953	1.527	3.716	4.119	1.548	1.238	0.664	1.124	0.697	1.103	0.757	2.103	1.785	1.107	2.523	1.488	0.289	1.094	0.637	3.586	0.233	0.342	0.784	0.511
5595	chr3	148505948	148517057	+	0	NA	Intergenic	AluSz6|SINE|Alu	-34086	NM_001871	1360	Hs.477891	NM_001871	ENSG00000153002	CPB1	CPB|PASP|PCPB	carboxypeptidase B1	protein-coding	1.878	nan	nan	0.087	0.262	0.159	0.108	0.288	0.058	0.695	0.340	0.064	0.471	0.020	0.079	1.295	1.213	1.486	1.151	0.192	0.282	nan	0.155	1.718	1.506	0.532	nan	0.376	nan	nan	0.418	0.500	1.069	0.031	0.059	0.499	1.031	3.787	2.017	0.035	0.032	0.009	0.029	0.108	0.064	0.009	1.578	0.266	0.299
1377	chr11	34065877	34079152	+	0	NA	promoter-TSS (NM_203364)	promoter-TSS (NM_203364)	-716	NM_005898	4076	Hs.471818	NM_005898	ENSG00000135387	CAPRIN1	GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI	cell cycle associated protein 1	protein-coding	2.702	3.075	nan	4.046	3.085	1.779	3.157	1.439	0.252	1.688	0.864	3.973	5.990	2.868	0.142	6.834	7.076	4.903	5.664	7.427	7.311	5.389	2.462	9.708	9.937	3.069	4.052	3.647	5.774	5.077	5.857	4.793	7.544	4.288	4.255	3.959	nan	2.242	1.389	3.266	4.787	1.054	1.495	3.157	3.973	2.062	1.460	3.074	1.174
4663	chr2	201234693	201282941	+	0	NA	intron (NM_001100423, intron 3 of 12)	intron (NM_001100423, intron 3 of 12)	85144	NM_001282744	26010	Hs.120323	NM_015535	ENSG00000196141	SPATS2L	DNAPTP6|SGNP	spermatogenesis associated serine rich 2 like	protein-coding	0.753	nan	0.852	0.359	1.133	0.701	0.445	0.830	0.094	0.107	0.112	0.302	2.677	0.106	0.082	0.971	1.192	2.782	4.443	0.351	0.330	0.794	0.319	0.965	1.004	0.155	0.280	0.907	0.857	0.331	0.212	1.088	1.634	0.184	0.306	0.414	1.049	0.395	0.400	2.268	1.653	0.018	0.108	0.445	0.302	0.024	0.204	1.261	0.169
7175	chr7	15023402	15029336	+	0	NA	Intergenic	HERVL74-int|LTR|ERVL	-145294	NM_004080	1607	Hs.567255	NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding	nan	0.880	nan	0.046	0.189	0.163	0.194	0.141	0.082	0.183	0.168	0.243	0.287	0.039	0.115	nan	0.207	9.827	2.086	0.305	0.460	0.462	0.123	0.260	0.193	0.538	0.652	0.319	0.267	0.294	0.158	0.093	0.078	0.210	0.142	0.510	1.250	0.515	0.530	0.067	0.059	0.064	0.120	0.194	0.243	0.033	0.035	0.033	0.020
185	chr1	32525364	32540126	+	0	NA	Intergenic	AluSg|SINE|Alu	-4887	NM_001319677	55116	Hs.25544	NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding	2.552	nan	2.120	3.174	2.226	1.107	2.533	0.990	0.343	1.535	0.629	5.621	4.976	0.898	0.121	2.303	2.638	1.440	2.080	5.460	5.120	nan	0.675	2.457	2.573	2.414	3.153	1.792	2.804	nan	2.499	1.032	1.690	0.909	0.959	1.467	2.688	1.752	nan	2.354	2.346	0.219	1.970	2.533	5.621	0.668	0.876	0.824	0.671
5122	chr21	39679488	39686748	+	0	NA	Intergenic	Intergenic	34880	NR_110545	102724678	Hs.635675	NR_110545		LINC01423	-	long intergenic non-protein coding RNA 1423	ncRNA	nan	0.766	0.790	1.653	0.456	0.199	1.444	0.148	0.111	0.098	0.129	7.197	0.402	0.045	0.094	0.487	0.488	0.217	0.311	1.167	1.544	nan	0.049	0.099	0.146	0.370	nan	0.489	0.762	0.484	0.187	0.152	0.190	0.737	0.353	0.150	0.199	0.349	0.486	0.046	0.048	0.091	0.055	1.444	7.197	0.066	0.432	0.019	0.119
5547	chr3	133074719	133083262	+	0	NA	intron (NM_001282865, intron 2 of 3)	L1ME1|LINE|L1	-39849	NM_003571	8419	Hs.659862	NM_003571	ENSG00000170819	BFSP2	CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN	beaded filament structural protein 2	protein-coding	1.061	nan	nan	0.174	0.644	0.262	0.241	0.374	0.188	0.351	0.285	0.144	0.277	0.013	0.093	1.214	0.961	8.137	1.603	0.472	0.647	1.782	0.590	0.706	0.876	0.423	0.761	0.258	0.321	nan	1.522	0.192	0.311	0.141	0.166	0.709	2.524	0.717	0.585	0.051	0.197	0.023	0.074	0.241	0.144	0.067	0.024	0.034	0.876
4	chr1	866694	882253	+	0	NA	exon (NM_152486, exon 6 of 14)	exon (NM_152486, exon 6 of 14)	13352	NM_152486	148398	Hs.335293	NM_152486	ENSG00000187634	SAMD11	MRS	sterile alpha motif domain containing 11	protein-coding	1.835	nan	1.241	0.374	0.534	0.278	1.586	0.276	0.208	0.302	0.302	0.966	2.403	1.583	0.085	0.663	1.305	0.726	1.190	1.110	0.908	1.298	0.294	0.959	0.972	2.264	nan	nan	1.032	nan	0.433	0.712	1.260	0.751	0.609	1.672	2.915	1.563	0.813	0.377	0.556	0.528	16.755	1.586	0.966	0.776	3.023	0.916	1.068
2716	chr14	83591145	83611362	+	0	NA	Intergenic	Intergenic	-1511848	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA	nan	0.869	1.083	0.126	0.427	0.242	0.413	0.208	0.116	0.101	0.121	0.089	0.246	0.027	0.083	0.364	0.178	1.366	1.111	0.376	0.435	0.375	0.126	0.555	0.526	0.150	0.284	0.282	0.281	1.348	1.189	0.055	0.103	0.749	0.479	2.046	5.240	0.703	0.648	0.050	0.070	0.188	0.150	0.413	0.089	0.024	0.045	0.015	1.334
127	chr1	21106891	21115620	+	0	NA	intron (NM_016287, intron 1 of 12)	AluY|SINE|Alu	1926	NM_016287	50809	Hs.142442	NM_016287	ENSG00000127483	HP1BP3	HP1-BP74|HP1BP74	heterochromatin protein 1 binding protein 3	protein-coding	4.695	2.603	nan	5.880	3.277	1.889	2.754	1.882	0.235	1.746	0.923	2.070	6.056	3.245	0.195	3.580	3.324	5.254	6.872	8.081	7.521	3.482	1.502	8.791	9.166	4.421	6.068	8.207	12.116	4.451	4.422	1.302	2.662	2.640	3.036	5.699	5.600	2.339	1.216	3.193	3.501	0.423	2.092	2.754	2.070	1.005	1.745	0.737	1.751
6942	chr6	124243500	124304948	+	0	NA	intron (NM_153355, intron 1 of 5)	L1MA4A|LINE|L1	149233	NM_001040214	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding	0.759	0.916	1.154	1.470	4.668	2.452	0.248	0.101	0.071	0.522	0.406	1.498	0.806	0.041	0.104	0.499	0.341	1.247	0.647	1.214	1.512	3.996	0.944	3.108	3.237	0.659	0.799	2.059	1.616	0.409	0.171	0.114	0.207	2.463	3.500	0.168	0.252	0.910	0.559	3.256	1.859	0.547	0.073	0.248	1.498	0.077	0.502	0.052	0.042
1648	chr11	113003352	113020711	+	0	NA	intron (NM_001076682, intron 2 of 19)	Charlie7|DNA|hAT-Charlie	132592	NR_034101	100288346	Hs.661826	NR_034101	ENSG00000227487	NCAM1-AS1	-	NCAM1 antisense RNA1	ncRNA	1.066	0.837	0.574	0.310	0.453	0.249	0.837	0.056	0.028	1.508	0.886	0.669	0.594	0.031	0.094	8.595	nan	2.375	1.589	1.560	1.604	4.647	1.642	0.496	0.496	1.019	nan	0.600	0.945	1.145	0.747	1.842	2.552	1.353	2.074	0.359	0.844	2.206	1.311	0.083	0.240	0.225	0.966	0.837	0.669	0.693	0.322	0.961	0.218
3596	chr17	77990580	78022993	+	0	NA	intron (NM_019020, intron 1 of 11)	intron (NM_019020, intron 1 of 11)	2871	NM_019020	125058	Hs.369819	NM_019020	ENSG00000167291	TBC1D16	-	TBC1 domain family member 16	protein-coding	2.434	2.222	3.779	3.320	1.929	1.055	1.041	0.912	0.354	1.470	0.688	2.186	6.567	0.569	0.138	2.071	2.474	0.599	0.841	2.902	2.352	3.480	1.652	1.111	1.141	nan	1.800	5.260	6.272	3.442	2.950	0.722	1.026	1.297	1.026	1.903	2.991	nan	1.263	1.489	1.351	0.114	0.309	1.041	2.186	0.430	1.773	0.214	0.636
2266	chr13	34728982	34743215	+	0	NA	Intergenic	Intergenic	343892	NM_181558	5983	Hs.115474	NM_002915	ENSG00000133119	RFC3	RFC38	replication factor C subunit 3	protein-coding	1.429	1.354	1.338	0.424	0.233	0.146	0.401	1.062	0.046	1.743	0.842	0.571	1.362	0.053	0.066	0.673	0.553	0.702	2.379	0.612	0.655	5.511	3.831	0.116	0.128	1.306	1.764	1.086	1.295	0.599	0.322	0.298	0.411	0.808	1.769	0.604	1.235	0.977	0.683	0.094	0.684	0.187	0.062	0.401	0.571	0.191	2.061	0.117	0.332
6043	chr4	151933448	151939916	+	0	NA	promoter-TSS (NM_001199282)	promoter-TSS (NM_001199282)	-33	NM_006726	987	Hs.480938	NM_006726	ENSG00000198589	LRBA	BGL|CDC4L|CVID8|LAB300|LBA	LPS responsive beige-like anchor protein	protein-coding	nan	3.791	3.288	8.449	6.456	3.588	1.912	0.905	0.223	2.121	0.958	8.559	9.244	1.934	0.106	2.604	3.435	4.806	6.305	9.858	7.104	8.285	3.542	6.699	6.523	1.867	2.365	6.907	10.013	3.910	5.122	2.779	5.792	4.329	3.218	3.998	4.904	3.029	1.692	2.594	4.367	0.633	3.799	1.912	8.559	0.597	1.237	2.248	1.631
2915	chr15	66531371	66535773	+	0	NA	intron (NM_032445, intron 1 of 22)	intron (NM_032445, intron 1 of 22)	12503	NM_032445	84465	Hs.712886	NM_032445	ENSG00000157890	MEGF11	-	multiple EGF like domains 11	protein-coding	0.837	0.766	nan	0.011	0.254	0.254	0.115	0.052	0.284	0.286	0.171	0.108	0.366	0.056	0.056	9.800	10.942	13.520	7.729	0.360	0.490	nan	0.200	1.094	1.301	0.415	0.676	0.236	0.337	0.641	0.367	7.750	12.335	0.168	0.169	0.213	0.433	0.577	0.369		0.040		0.071	0.115	0.108	0.177	0.139	6.464	0.028
7671	chr8	50307900	50315050	+	0	NA	Intergenic	Intergenic	113264	NR_134294	100507464	Hs.245745	NR_134294	ENSG00000253380	LOC100507464	-	uncharacterized LOC100507464	ncRNA	0.744	nan	0.614	0.086	0.141	0.135	0.243	0.061	0.136	0.044	0.079	0.100	0.248	0.015	0.123	0.348	0.209	0.276	0.223	0.213	0.290	0.267	0.112	0.141	0.131	0.342	nan	0.372	0.192	0.358	0.152	0.101	0.129	0.424	0.347	0.120	0.205	0.635	0.620	0.008	0.199	0.108	0.143	0.243	0.100	0.042	3.857	0.041	0.329
5759	chr3	188662403	188674895	+	0	NA	Intergenic	Intergenic	-3221	NR_046873	100874043	Hs.616287	NR_046873	ENSG00000234076	TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA	1.634	2.050	0.886	0.532	3.533	2.089	0.787	0.857	0.154	0.718	0.334	2.041	3.259	0.261	0.060	0.467	0.500	1.726	2.780	4.921	3.886	1.285	0.280	1.077	1.202	1.502	2.207	1.687	1.916	1.174	1.080	0.452	0.782	0.718	0.657	0.193	0.275	3.625	1.714	2.471	1.849	0.076	0.431	0.787	2.041	0.419	0.833	0.357	0.049
6497	chr5	146882485	146919750	+	0	NA	Intergenic	Intergenic	-11498	NM_001197294	1809	Hs.519659	NM_001387	ENSG00000113657	DPYSL3	CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1	dihydropyrimidinase like 3	protein-coding	nan	1.133	0.793	0.746	3.382	1.669	0.187	0.442	0.147	0.584	0.279	1.899	2.273	0.085	0.119	5.137	4.722	4.158	1.270	1.034	0.974	1.140	0.557	0.070	0.087	4.686	5.179	0.789	1.185	0.769	0.787	3.490	5.689	1.285	1.432	0.538	1.410	1.901	1.111	0.099	0.189	0.387	0.094	0.187	1.899	0.037	0.779	3.361	0.133
5408	chr3	77540005	77558364	+	0	NA	intron (NM_001128929, intron 4 of 24)	intron (NM_001128929, intron 4 of 24)	402021	NM_001128929	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding	0.689	0.549	0.807	0.114	0.246	0.088	0.063	0.082	0.061	0.119	0.142	0.072	0.176	0.030	0.076	0.166	0.132	0.186	nan	0.538	0.725	0.275	0.123	0.099	0.117	3.059	2.861	0.272	0.222	0.441	0.159	0.053	0.116	0.550	0.373	0.219	nan	0.427	0.318	0.100	0.053	0.094	0.112	0.063	0.072	0.064	0.044	0.001	0.109
4963	chr20	44843113	44859929	+	0	NA	intron (NM_021248, intron 4 of 11)	intron (NM_021248, intron 4 of 11)	85616	NM_021248	64405	Hs.472861	NM_021248	ENSG00000149654	CDH22	C20orf25|dJ998H6.1	cadherin 22	protein-coding	nan	nan	0.611	1.093	0.611	0.304	1.040	0.150	0.076	0.157	0.111	0.968	4.422	0.071	0.094	3.204	4.636	0.269	0.432	3.823	4.649	nan	0.978	0.198	0.154	0.689	0.917	4.934	6.488	nan	2.485	1.383	2.088	0.435	0.471	0.981	2.099	0.539	0.406	2.933	2.832	0.091	1.184	1.040	0.968	0.605	0.240	1.700	0.562
5345	chr3	25077097	25091691	+	0	NA	intron (NM_001290216, intron 2 of 10)	L1MA9|LINE|L1	213580	NM_001290216	5915	Hs.543218	NM_000965	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RARbeta1|RRB2	retinoic acid receptor beta	protein-coding	0.783	1.270	0.581	0.024	0.302	0.132	0.547	1.512	0.066	0.151	0.108	0.016	0.218	0.075	0.074	0.210	0.125	3.636	7.050	0.739	0.702	0.111	0.028	0.207	0.174	0.708	0.844	0.240	0.212	nan	0.299	0.233	0.429	0.739	1.121	0.165	0.215	0.384	0.349	0.259	0.066	0.092	0.243	0.547	0.016	0.099	0.051	0.245	0.060
3588	chr17	76960521	76984238	+	0	NA	intron (NM_005567, intron 2 of 5)	intron (NM_005567, intron 2 of 5)	3682	NM_005567	3959	Hs.514535	NM_005567	ENSG00000108679	LGALS3BP	90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90	galectin 3 binding protein	protein-coding	2.002	2.157	2.451	1.495	1.714	0.945	1.152	1.193	0.386	1.141	0.671	1.009	2.794	0.182	0.098	1.803	2.690	0.821	1.332	2.409	2.544	3.653	0.934	0.606	0.603	nan	1.368	3.661	4.160	2.614	2.983	1.057	1.781	1.198	1.505	0.492	0.868	nan	0.758	0.942	2.535	0.257	0.718	1.152	1.009	0.367	1.556	0.682	0.109
722	chr1	185317032	185340547	+	0	NA	Intergenic	L1P4a|LINE|L1	-24618	NR_038424	100288079	Hs.131220	NR_038424	ENSG00000261024	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo	nan	nan	0.984	0.126	0.281	0.109	0.300	0.209	0.144	0.126	0.130	0.204	0.378	0.129	0.144	1.592	1.587	6.611	10.045	0.461	nan	0.405	0.205	nan	0.841	0.486	0.747	0.319	0.401	0.332	0.190	2.245	1.916	0.078	0.095	0.324	nan	0.481	0.513	0.030	0.207	0.024	0.247	0.300	0.204	0.070	0.043	0.989	0.111
7704	chr8	62145785	62151774	+	0	NA	Intergenic	Intergenic	-51746	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding	4.772	0.645	1.632	0.199	0.371	0.070	0.215	0.013	0.027	0.026	0.116	0.481	0.480	0.037	0.033	0.319	0.400	0.195	0.330	1.363	1.427	0.474	0.245	0.032	0.055	1.152	nan	0.116	0.149	nan	1.210	0.252	0.302	0.823	0.733	0.288	0.742	2.650	1.696	0.027	0.134	0.223	0.291	0.215	0.481	9.458	0.085	0.083	0.083
4060	chr19	40182343	40203640	+	0	NA	Intergenic	Intergenic	-1955	NM_020129	56891	Hs.24236	NM_020129	ENSG00000006659	LGALS14	CLC2|PPL13	galectin 14	protein-coding	0.683	0.755	0.690	1.824	0.285	0.136	0.452	0.070	0.091	0.044	0.091	0.056	0.708	0.051	0.155	0.622	0.396	0.191	0.212	0.314	0.359	4.455	1.347	0.273	0.276	0.194	0.323	0.195	0.218	0.377	0.117	1.617	1.954	0.114	0.116	0.143	0.297	1.419	0.955	0.030	0.171	0.031	0.075	0.452	0.056	0.018	0.134	1.642	0.081
1597	chr11	100501477	100516005	+	0	NA	Intergenic	Intergenic	-49666	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding	1.115	1.080	1.034	0.060	0.330	0.088	0.417	0.274	0.088	0.142	0.092	0.066	0.749	0.067	0.104	0.562	0.318	0.249	0.398	0.362	0.447	0.144	0.096	0.594	0.613	4.500	5.003	0.146	0.162	1.404	0.788	0.202	0.360	0.436	0.278	1.009	2.554	0.750	0.691	0.031	0.037	0.068	0.425	0.417	0.066	0.142	0.154	0.061	0.844
6911	chr6	112236493	112279792	+	0	NA	Intergenic	Intergenic	-63487	NM_002037	2534	Hs.390567	NM_002037	ENSG00000010810	FYN	SLK|SYN|p59-FYN	FYN proto-oncogene, Src family tyrosine kinase	protein-coding	nan	1.725	nan	0.925	1.137	0.511	1.947	0.510	0.115	0.235	0.220	0.694	1.858	0.051	0.136	0.427	0.286	0.349	0.361	0.989	nan	nan	1.294	0.222	0.284	0.416	nan	0.518	0.396	1.212	1.193	0.220	0.286	1.065	1.273	0.215	nan	1.867	0.756	0.314	0.222	0.311	0.912	1.947	0.694	0.584	0.211	0.091	0.097
153	chr1	26785940	26801702	+	0	NA	non-coding (NR_125952, exon 1 of 4)	non-coding (NR_125952, exon 1 of 4)	207	NR_125952	101928324	Hs.663256	NR_125952		LOC101928324	-	uncharacterized LOC101928324	ncRNA	3.347	2.488	nan	4.917	4.576	2.410	2.623	0.869	0.133	1.507	0.890	2.735	6.895	1.755	0.110	2.649	3.070	1.849	2.351	9.033	8.972	4.020	1.698	3.159	3.241	4.099	5.248	3.993	4.950	3.806	4.470	1.639	2.794	2.987	2.710	3.852	6.258	4.082	1.738	4.845	3.259	1.053	2.064	2.623	2.735	0.813	1.165	0.993	2.541
2932	chr15	69358717	69367981	+	0	NA	intron (NR_031680, intron 3 of 4)	MSTB|LTR|ERVL-MaLR	-9841	NR_026949	283673	Hs.177927	NM_173610	ENSG00000212766	EWSAT1	LINC00277|NCRNA00277|TMEM84	Ewing sarcoma associated transcript 1	ncRNA	1.664	1.379	nan	0.183	0.560	0.327	1.066	0.090	0.052	0.101	0.097	0.507	1.832	0.445	0.086	3.154	3.016	0.183	0.309	1.613	1.527	nan	0.501	0.529	0.489	1.775	1.916	0.696	0.952	1.656	1.838	1.723	2.080	1.725	1.819	0.896	1.357	0.546	0.518	0.275	0.478	0.431	2.144	1.066	0.507	1.995	0.132	1.408	0.395
2387	chr13	97946396	97964499	+	0	NA	intron (NM_001306070, intron 2 of 7)	intron (NM_001306070, intron 2 of 7)	80897	NM_144778	10150	Hs.657347	NM_144778	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding	1.086	1.297	1.095	0.246	1.219	0.630	0.455	0.531	0.169	0.218	0.117	0.506	0.353	0.173	0.091	1.062	1.273	2.890	6.052	0.853	0.792	0.297	0.200	0.169	0.191	0.204	0.341	0.984	1.263	0.600	0.411	0.553	0.834	0.219	0.377	1.247	2.697	0.328	0.266	0.047	0.341	0.032	0.870	0.455	0.506	0.156	0.443	0.479	0.267
101	chr1	16156970	16185903	+	0	NA	intron (NR_024279, intron 1 of 1)	intron (NR_024279, intron 1 of 1)	-2923	NM_015001	23013	Hs.744843	NM_015001	ENSG00000065526	SPEN	HIAA0929|MINT|RBM15C|SHARP	spen family transcriptional repressor	protein-coding	4.248	2.816	nan	10.724	4.061	2.064	2.797	1.741	0.278	2.315	1.185	2.068	6.349	3.700	0.173	4.409	3.807	3.614	5.470	7.312	6.159	3.867	1.982	8.211	nan	3.676	nan	8.784	12.731	nan	5.038	2.441	3.878	2.358	3.094	4.535	4.968	2.250	1.225	4.993	3.241	0.651	1.900	2.797	2.068	0.920	1.672	2.208	1.913
340	chr1	62100016	62118318	+	0	NA	Intergenic	Intergenic	-10747	NR_073400	414927	Hs.123471	NR_073400		MGC34796	-	sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene	pseudo	1.256	0.860	nan	0.164	0.279	0.196	0.126	0.233	0.107	0.207	0.144	0.294	0.353	0.054	0.131	0.333	0.376	0.622	0.564	0.483	0.622	0.626	0.156	0.325	0.311	nan	nan	1.076	nan	0.652	0.354	0.131	0.336	0.115	0.126	0.245	0.583	3.838	1.934	0.271	0.096	0.005	0.057	0.126	0.294	0.042	0.840	0.027	0.078
4362	chr2	54776213	54810195	+	0	NA	intron (NM_178313, intron 1 of 30)	intron (NM_178313, intron 1 of 30)	7673	NM_178313	6711	Hs.503178	NM_003128	ENSG00000115306	SPTBN1	ELF|HEL102|SPTB2|betaSpII	spectrin beta, non-erythrocytic 1	protein-coding	1.254	nan	1.819	1.225	1.380	0.756	0.867	1.200	0.119	0.872	0.517	2.112	2.589	0.150	0.077	1.903	2.290	2.653	5.900	1.825	1.686	3.924	1.429	4.169	4.339	0.521	0.818	2.366	3.230	1.166	0.980	2.435	4.644	1.160	1.607	1.150	1.930	0.982	0.753	0.537	2.086	0.148	1.372	0.867	2.112	0.292	1.259	4.726	0.366
6403	chr5	111015244	111023287	+	0	NA	intron (NR_040093, intron 2 of 6)	intron (NR_040093, intron 2 of 6)	72683	NM_001142483	9315	Hs.36053	NM_004772	ENSG00000134986	NREP	C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.838	0.890	0.891	0.220	0.214	0.179	0.128	3.292	0.145	0.097	0.153	0.119	0.577	0.068	0.117	0.313	0.452	6.036	4.450	0.478	0.471	0.470	0.106	0.340	0.383	0.776	nan	0.563	0.401	0.506	0.294	0.827	1.290	0.416	0.525	0.239	0.436	0.517	0.392	0.163	0.144	0.188	0.174	0.128	0.119		0.089	0.679	0.105
3655	chr18	8341849	8350897	+	0	NA	intron (NM_001105244, intron 23 of 32)	MLT1A|LTR|ERVL-MaLR	20659	NR_024419	100192426	Hs.666655	NR_024419	ENSG00000266149	LOC100192426	-	uncharacterized LOC100192426	ncRNA	0.935	0.816	0.855	0.517	2.901	1.432	0.182	0.075	0.053	0.604	0.382	5.281	nan	0.024	0.125	0.857	1.046	0.172	0.268	3.602	4.353	nan	1.903	0.221	0.313	0.129	nan	2.476	2.332	nan	0.232	0.330	0.595	3.448	3.995	0.185	nan	4.656	2.600	0.074	0.372	0.679	0.190	0.182	5.281	0.235	0.056	0.131	0.054
4012	chr19	29879683	29898500	+	0	NA	intron (NR_040029, intron 4 of 9)	intron (NR_040029, intron 4 of 9)	127568	NR_040029	284395	Hs.631601	NR_040029	ENSG00000264515	LOC284395	-	uncharacterized LOC284395	ncRNA	nan	0.527	0.870	0.107	1.179	0.750	0.868	0.080	0.078	0.134	0.113	2.691	10.558	0.057	0.089	0.979	1.405	0.194	0.274	3.478	3.114	0.709	0.169	0.142	0.120	0.361	0.583	0.251	0.220	0.358	0.164	0.607	0.957	0.064	0.059	0.200	0.210	0.661	0.718	3.399	3.656	0.015	0.439	0.868	2.691	0.258	0.011	0.265	0.065
5752	chr3	185538407	185544196	+	0	NA	intron (NR_138486, intron 1 of 15)	CpG	1543	NM_006548	10644	Hs.35354	NM_006548	ENSG00000073792	IGF2BP2	IMP-2|IMP2|VICKZ2	insulin like growth factor 2 mRNA binding protein 2	protein-coding	1.844	2.399	1.658	1.144	0.655	0.321	1.475	0.104	0.029	0.433	0.154	0.228	3.144	4.724	0.172	4.445	6.229	5.607	7.028	1.540	1.320	1.366	0.405	5.705	5.957	1.758	3.157	2.278	3.886	5.332	5.358	2.032	5.717	0.129	0.166	11.906	7.988	0.183	0.266	0.201	0.289	0.067	1.017	1.475	0.228	0.050	0.034	1.181	5.204
7204	chr7	25395855	25411460	+	0	NA	Intergenic	Intergenic	-135552	NM_022150	64111	Hs.60473	NM_022150	ENSG00000105954	NPVF	C7orf9|RFRP	neuropeptide VF precursor	protein-coding	2.381	1.710	2.505	0.120	3.682	2.066	1.460	0.301	0.166	1.815	0.745	4.605	1.523	0.028	0.181	0.654	0.622	0.284	nan	4.508	4.173	1.505	2.331	0.252	0.242	1.520	2.278	0.505	1.189	0.367	0.182	0.205	0.421	0.073	0.116	0.246	nan	3.499	1.909	0.089	1.680	0.042	0.900	1.460	4.605	0.037	4.641	0.228	0.136
8133	chr9	38305177	38320983	+	0	NA	Intergenic	AluSz|SINE|Alu	-79581	NM_000692	219	Hs.436219	NM_000692	ENSG00000137124	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family member B1	protein-coding	0.789	nan	2.915	0.452	0.389	0.167	0.402	0.239	0.071	0.276	0.131	0.189	1.604	0.042	0.077	0.512	0.394	5.462	3.521	0.746	0.667	1.189	0.407	1.563	1.628	0.332	0.554	2.612	2.428	0.440	0.252	0.372	0.853	0.200	0.195	0.240	0.597	2.253	1.295	5.869	1.715	0.018	0.105	0.402	0.189	0.049	0.129	0.232	0.118
3536	chr17	71731858	71769190	+	0	NA	intron (NM_001278587, intron 4 of 5)	AluSc8|SINE|Alu	16531	NM_001278587	100134391	Hs.694655	NM_001278587		LOC100134391	-	uncharacterized LOC100134391	protein-coding	1.578	1.134	2.695	0.967	3.024	1.555	1.353	0.094	0.082	1.741	0.765	2.417	4.456	0.065	0.086	0.939	1.127	0.239	0.257	5.188	5.557	1.080	0.405	0.126	0.164	nan	1.473	6.916	6.862	1.662	1.077	0.386	0.473	0.411	0.494	0.916	2.921	nan	1.379	1.369	2.967	0.069	0.175	1.353	2.417	0.109	0.776	0.082	0.483
5084	chr21	28328244	28339956	+	0	NA	intron (NM_007038, intron 1 of 7)	intron (NM_007038, intron 1 of 7)	5339	NM_007038	11096	Hs.58324	NM_007038	ENSG00000154736	ADAMTS5	ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2	ADAM metallopeptidase with thrombospondin type 1 motif 5	protein-coding	2.642	0.614	0.929	0.068	0.149	0.096	0.065	0.624	0.082	0.041	0.082	0.020	0.313	0.075	0.088	0.307	0.296	0.375	0.510	0.162	0.231	0.070	0.067	0.221	0.306	2.083	3.084	0.138	0.147	0.789	0.659	0.081	0.126	0.079	0.075	0.130	nan	3.225	1.876	0.009	0.046	0.025	0.307	0.065	0.020	0.067	0.078	0.025	0.063
3571	chr17	75404854	75458336	+	0	NA	intron (NM_001293696, intron 1 of 9)	intron (NM_001293696, intron 1 of 9)	-15018	NM_001113496	10801	Hs.440932	NM_006640	ENSG00000184640	SEPT9	AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1	septin 9	protein-coding	1.917	1.700	2.100	0.418	1.174	0.659	0.614	1.894	0.271	0.406	0.339	1.309	3.065	0.273	0.094	1.860	2.467	0.832	1.427	2.530	2.408	1.248	0.365	1.107	1.164	nan	4.243	3.168	2.827	3.111	2.818	0.743	1.171	0.570	0.705	1.006	2.359	nan	0.519	1.047	0.293	0.134	0.613	0.614	1.309	0.535	0.420	0.315	0.561
2510	chr14	29359508	29372224	+	0	NA	Intergenic	Intergenic	-110873	NR_135255	105370424	Hs.375809	NR_135255	ENSG00000257056	LOC105370424	-	uncharacterized LOC105370424	ncRNA	1.347	0.971	0.839	0.255	0.279	0.102	0.251	0.200	0.078	0.086	0.099	0.180	0.307	0.034	0.109	0.190	0.179	0.138	0.168	0.467	0.618	0.624	0.194	0.121	0.156	0.731	1.045	0.462	0.450	0.642	0.232	0.171	0.213	4.211	5.560	0.530	1.287	0.633	0.479	0.061	0.098	0.833	0.200	0.251	0.180	0.038	0.103	0.023	0.254
2458	chr13	112707052	112734824	+	0	NA	promoter-TSS (NM_005986)	promoter-TSS (NM_005986)	-975	NM_005986	6656	Hs.202526	NM_005986	ENSG00000182968	SOX1	-	SRY-box 1	protein-coding	0.519	nan	0.657	1.908	8.194	4.432	8.728	0.038	0.058	1.724	0.802	11.949	18.578	0.035	0.045	1.479	2.219	0.268	0.434	19.843	16.045	3.486	1.230	0.029	0.036	0.019	0.049	4.043	4.931	0.347	0.267	0.971	1.326	0.947	0.563	0.074	0.107	1.099	0.577	6.787	5.037	0.107	0.486	8.728	11.949	0.010	0.007	0.488	0.040
834	chr1	208349721	208358820	+	0	NA	intron (NM_025179, intron 3 of 31)	intron (NM_025179, intron 3 of 31)	63395	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding	1.296	1.820	0.948	1.931	7.669	3.654	1.407	1.597	0.264	0.689	0.548	2.264	6.953	0.059	0.090	1.724	2.489	0.935	1.474	4.326	3.998	2.580	0.708	nan	nan	1.216	1.536	4.019	4.063	0.600	0.325	1.282	2.451	1.266	0.881	0.578	1.561	2.321	1.176	4.228	3.153	0.386	0.191	1.407	2.264	0.137	0.167	2.861	0.249
7345	chr7	80445137	80516333	+	0	NA	intron (NM_006379, intron 2 of 17)	AluSg|SINE|Alu	67932	NM_006379	10512	Hs.269109	NM_006379	ENSG00000075223	SEMA3C	SEMAE|SemE	semaphorin 3C	protein-coding	1.293	0.847	1.082	0.112	0.288	0.145	0.294	0.891	0.167	0.156	0.175	0.082	0.273	1.556	0.194	0.540	0.376	0.666	1.030	0.304	0.367	0.130	0.104	0.383	0.380	0.473	0.740	0.220	0.244	0.518	0.215	0.259	0.483	2.067	2.517	1.357	nan	0.637	0.587	0.832	0.181	0.620	0.012	0.294	0.082	0.036	0.043	0.132	0.558
7760	chr8	77686259	77707991	+	0	NA	intron (NM_024721, intron 4 of 10)	intron (NM_024721, intron 4 of 10)	-101615	NR_024360	100192378	Hs.596420	NR_024360	ENSG00000253661	ZFHX4-AS1	-	ZFHX4 antisense RNA 1	ncRNA	1.248	0.861	0.868	0.113	0.297	0.177	0.737	2.079	0.149	0.151	0.122	0.083	0.253	0.105	0.094	0.345	0.274	1.669	1.840	0.484	0.663	0.698	0.255	0.748	0.753	0.499	0.839	0.181	0.259	0.474	0.185	0.766	1.547	2.845	4.878	0.225	0.570	0.418	0.411	0.182	0.233	0.778	0.018	0.737	0.083	0.009	0.061	0.501	0.062
1216	chr10	115321998	115329176	+	0	NA	intron (NM_004132, intron 1 of 12)	L1MC4|LINE|L1	12850	NM_004132	3026	Hs.422542	NM_004132	ENSG00000148702	HABP2	FSAP|HABP|HGFAL|NMTC5|PHBP	hyaluronan binding protein 2	protein-coding	0.630	nan	0.818	2.988	0.350	0.264	0.444	0.147	0.089	1.244	0.405	1.051	2.647	0.034	0.074	0.560	0.553	0.476	0.745	3.297	3.420	10.857	3.606	1.474	1.659	0.094	0.343	8.091	7.351	0.168	0.113	0.199	0.509	0.582	0.483	0.183	0.418	1.444	0.786	0.239	4.036	0.065	1.040	0.444	1.051		0.029	0.124	0.085
3879	chr18	66878329	66887032	+	0	NA	Intergenic	Intergenic	-185604	NM_152721	220164	Hs.278285	NM_152721	ENSG00000206052	DOK6	DOK5L|HsT3226	docking protein 6	protein-coding	0.950	0.909	2.134	3.753	0.722	0.326	0.969	0.081	0.073	1.116	0.934	0.248	1.119	0.050	0.086	0.370	0.376	0.708	0.878	1.172	1.087	15.592	6.615	0.433	nan	0.549	nan	4.278	3.139	1.013	1.119	0.523	0.973	1.891	1.153	1.827	2.897	4.384	2.086	0.753	0.679	0.252	0.966	0.969	0.248	0.355	0.323	0.352	0.515
6616	chr6	12007640	12014194	+	0	NA	Intergenic	Intergenic	-1807	NM_002114	3096	Hs.567284	NM_002114	ENSG00000095951	HIVEP1	CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	7.665	nan	5.468	3.996	3.748	2.252	4.977	7.713	0.466	2.253	0.924	4.079	6.161	3.356	0.121	4.141	7.614	7.496	11.774	6.556	4.538	5.887	2.298	8.065	7.634	3.001	3.551	5.949	11.106	4.623	7.149	2.078	4.918	4.707	3.334	6.027	6.954	2.395	1.415	1.398	4.295	1.513	4.045	4.977	4.079	1.152	3.291	3.098	1.949
2864	chr15	45825226	45830618	+	0	NA	intron (NR_022014, intron 3 of 5)	intron (NR_022014, intron 3 of 5)	-12920	NM_001321036	7782	Hs.162989	NM_013309	ENSG00000104154	SLC30A4	ZNT4|znT-4	solute carrier family 30 member 4	protein-coding	0.765	0.552	nan	0.017	0.299	0.178	0.128	0.155	0.063	0.116	0.120	0.088	0.215	0.093	0.107	1.670	1.911	11.923	5.881	0.302	0.383	0.285	0.148	0.248	0.442	0.222	nan	0.128	0.196	0.583	0.201	0.823	1.572	0.048	0.085	0.368	0.584	0.472	0.533	0.021	0.127	0.035	0.044	0.128	0.088		0.019	0.164	0.195
7458	chr7	117822834	117825848	+	0	NA	intron (NM_016200, intron 1 of 3)	CpG	255	NM_016200	51691	Hs.655046	NM_016200	ENSG00000128534	LSM8	NAA38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	nan	2.670	5.776	5.612	4.960	3.000	3.041	6.046	0.532	2.533	1.764	6.684	10.604	6.125	0.136	8.231	9.122	15.726	21.498	9.254	7.823	10.175	5.527	19.419	20.932	6.542	7.761	8.097	12.508	6.873	8.098	5.362	9.012	8.210	10.557	7.067	6.143	6.761	3.988	5.051	3.401	1.174	2.553	3.041	6.684	1.479	3.042	1.903	0.826
1667	chr11	115898160	115949650	+	0	NA	Intergenic	Intergenic	-292987	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA	0.952	1.059	0.908	0.684	0.830	0.365	0.724	0.038	0.032	0.640	0.492	2.942	1.163	0.048	0.116	0.711	nan	0.168	0.250	1.317	1.395	3.933	0.996	0.114	0.119	0.580	nan	4.596	3.272	0.678	0.299	0.562	0.604	0.946	0.760	0.881	3.355	2.592	1.338	1.557	0.182	0.187	0.981	0.724	2.942	0.394	1.145	0.131	0.689
5085	chr21	30384375	30398391	+	0	NA	intron (NM_001320724, intron 1 of 5)	CpG	302	NM_016940	10069	Hs.713123	NM_016940	ENSG00000156253	RWDD2B	C21orf6|GL011	RWD domain containing 2B	protein-coding	2.863	1.829	2.811	1.855	1.780	0.949	1.553	1.150	0.371	0.650	0.412	1.758	4.935	1.687	0.136	2.885	2.964	2.225	3.486	2.475	2.179	2.388	1.089	4.627	5.047	2.562	3.264	3.289	4.410	5.122	5.144	1.667	2.383	2.538	2.929	2.526	3.320	nan	1.587	1.069	1.646	0.381	0.694	1.553	1.758	0.536	1.144	0.728	0.965
569	chr1	155157105	155166739	+	0	NA	exon (NM_001204286, exon 2 of 9)	exon (NM_001204286, exon 2 of 9)	784	NM_001204289	4582	Hs.89603	NM_002456	ENSG00000185499	MUC1	ADMCKD|ADMCKD1|CA 15-3|CD227|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM	mucin 1, cell surface associated	protein-coding	4.247	nan	2.233	3.060	4.982	2.714	5.437	1.857	0.550	1.576	0.768	5.600	12.316	5.243	0.225	3.228	5.056	2.237	3.950	7.172	6.789	4.076	1.547	2.106	2.378	2.323	3.246	6.658	11.037	1.704	1.774	5.081	8.372	5.250	3.560	2.924	2.654	2.474	1.419	5.772	7.431	1.417	2.097	5.437	5.600	1.923	3.422	9.286	0.615
3111	chr16	30536853	30548145	+	0	NA	3' UTR (NM_001305018, exon 3 of 3)	3' UTR (NM_001305018, exon 3 of 3)	3792	NM_023931	65988	Hs.592032	NM_023931	ENSG00000169955	ZNF747	-	zinc finger protein 747	protein-coding	4.438	2.892	3.968	4.932	4.490	2.109	3.818	1.172	0.170	1.371	0.512	4.175	10.854	1.940	0.106	4.935	4.646	3.812	6.506	4.525	3.809	7.501	3.152	8.582	8.899	3.221	4.257	9.084	12.999	4.965	5.804	3.476	4.508	5.714	5.302	3.931	3.725	3.094	1.587	3.015	2.403	1.230	2.319	3.818	4.175	1.591	3.025	1.795	1.162
4269	chr2	26756382	26776452	+	0	NA	intron (NM_001287489, intron 1 of 45)	MIR|SINE|MIR	15149	NM_194248	9381	Hs.91608	NM_004802	ENSG00000115155	OTOF	AUNB1|DFNB6|DFNB9|FER1L2|NSRD9	otoferlin	protein-coding	1.010	1.183	1.148	1.419	1.898	1.009	0.270	0.034	0.089	1.721	0.734	2.665	7.044	0.135	0.097	0.385	0.391	0.172	0.239	4.772	3.904	3.986	1.115	0.449	0.524	0.270	0.612	3.093	nan	0.591	0.411	0.261	0.321	0.828	0.610	0.329	0.518	3.136	1.810	2.319	1.886	0.096	0.659	0.270	2.665	0.154	0.388	0.039	0.085
6727	chr6	34356872	34362043	+	0	NA	intron (NM_001202470, intron 5 of 8)	intron (NM_001202470, intron 5 of 8)	1000	NM_006703	11165	Hs.188882	NM_006703	ENSG00000272325	NUDT3	DIPP|DIPP-1|DIPP1	nudix hydrolase 3	protein-coding	nan	2.459	nan	3.102	3.017	1.301	5.152	3.580	0.438	1.511	1.266	4.605	7.562	5.529	0.214	5.258	5.284	2.424	nan	nan	5.754	5.699	2.087	9.611	9.672	4.700	5.887	5.153	8.580	7.945	10.913	2.309	5.900	4.689	3.763	10.982	9.936	2.345	1.490	2.198	4.168	0.760	3.868	5.152	4.605	1.405	2.891	2.638	4.567
5188	chr22	19835330	19844148	+	0	NA	exon (NM_024627, exon 3 of 3)	exon (NM_024627, exon 3 of 3)	2632	NM_024627	79680	Hs.105642	NM_024627	ENSG00000215012	C22orf29	BOP	chromosome 22 open reading frame 29	protein-coding	2.617	nan	2.553	2.137	3.705	1.688	3.026	1.209	0.212	2.424	0.832	3.583	4.939	1.908	0.084	2.742	3.345	3.575	6.798	4.273	4.173	3.138	1.047	5.142	4.981	3.474	4.705	4.014	4.992	4.330	5.061	1.243	2.819	2.559	2.395	2.123	3.035	4.442	2.160	2.821	1.559	0.672	1.027	3.026	3.583	1.231	1.866	0.550	1.080
4335	chr2	50338004	50372168	+	0	NA	intron (NM_001135659, intron 19 of 23)	intron (NM_001135659, intron 19 of 23)	-153745	NM_001320157	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding	1.207	nan	1.057	0.474	0.326	0.150	0.660	0.105	0.076	0.426	0.355	1.013	1.091	0.076	0.122	0.428	0.259	1.480	1.728	1.103	1.212	2.038	0.851	0.494	0.507	1.520	1.610	1.621	2.399	0.628	0.354	0.180	0.265	0.705	0.543	0.898	2.256	0.877	0.693	6.126	0.858	0.158	0.261	0.660	1.013	0.279	0.502	0.061	0.553
5251	chr22	36121608	36126992	+	0	NA	intron (NM_030642, intron 3 of 4)	AluY|SINE|Alu	10381	NM_030642	80831	Hs.326561	NM_030642	ENSG00000128313	APOL5	APOL-V|APOLV	apolipoprotein L5	protein-coding	0.931	nan	3.912	0.556	0.465	0.267	0.282	0.211	0.175	0.701	0.104	0.485	0.662	0.023	0.090	0.377	0.286	0.119	0.418	2.253	2.133	1.020	0.372	0.197	0.162	0.299	nan	2.111	1.920	nan	0.449	0.134	0.162	0.640	0.979	0.120	0.118	1.290	0.841	0.118	0.097	0.072	0.037	0.282	0.485	0.492	5.617	0.055	0.024
5048	chr20	62251750	62261158	+	0	NA	intron (NM_012384, intron 1 of 9)	intron (NM_012384, intron 1 of 9)	2000	NM_012384	26205	Hs.473286	NM_012384	ENSG00000101216	GMEB2	GMEB-2|P79PIF|PIF79	glucocorticoid modulatory element binding protein 2	protein-coding	3.700	3.285	3.079	2.717	2.224	1.522	3.777	2.039	0.362	1.766	0.815	4.152	3.854	2.492	0.162	4.698	nan	2.398	2.921	4.161	4.130	4.773	1.847	12.550	12.513	2.831	4.020	3.159	5.040	4.833	5.217	2.881	4.972	1.685	1.756	3.498	4.839	2.479	1.399	2.489	2.763	0.428	1.254	3.777	4.152	0.906	3.861	1.253	1.431
6444	chr5	126110465	126116807	+	0	NA	intron (NR_134488, intron 1 of 11)	CpG	791	NM_001198557	4001	Hs.89497	NM_005573	ENSG00000113368	LMNB1	ADLD|LMN|LMN2|LMNB	lamin B1	protein-coding	nan	6.246	4.323	5.125	9.981	5.479	3.542	2.227	0.499	2.649	1.310	4.239	12.232	9.233	0.255	4.057	4.824	7.437	nan	12.153	10.667	6.926	3.032	15.290	15.942	5.942	7.208	7.189	11.937	10.599	13.697	2.590	5.252	13.916	14.410	6.563	6.253	2.624	1.588	5.074	8.602	4.256	4.968	3.542	4.239	1.376	4.212	2.443	3.373
4353	chr2	53714836	53729022	+	0	NA	Intergenic	Intergenic	-272991	NM_001346127	494143	Hs.585944	NM_001008708	ENSG00000143942	CHAC2	-	ChaC cation transport regulator homolog 2	protein-coding	6.134	3.607	6.328	0.281	0.303	0.147	0.405	0.239	0.067	0.328	0.185	0.469	0.798	0.070	0.098	0.281	0.219	0.209	0.296	1.638	1.637	0.950	0.214	0.623	0.573	1.058	1.313	1.269	0.922	0.470	0.224	0.268	0.319	8.531	7.274	0.562	1.558	1.338	0.894	0.454	0.163	1.206	0.084	0.405	0.469	0.034	2.438	0.063	0.519
2939	chr15	70809028	70822677	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	63093	NR_135691	101929151	Hs.434703	NR_135691	ENSG00000280639	LOC101929151	-	uncharacterized LOC101929151	ncRNA	0.689	1.291	0.772	0.987	1.466	0.645	1.998	0.198	0.058	0.909	0.467	4.852	4.302	0.085	0.041	0.889	1.384	1.067	2.058	2.297	2.981	1.887	0.605	0.156	0.202	0.164	0.300	1.812	2.529	1.210	1.142	0.300	0.476	0.783	0.745	0.249	0.423	1.498	0.714	0.784	0.176	0.502	0.931	1.998	4.852	0.333	0.193	0.166	0.064
1877	chr12	26250010	26280294	+	0	NA	Intergenic	Intergenic	12851	NM_030762	79365	Hs.177841	NM_030762	ENSG00000123095	BHLHE41	BHLHB3|DEC2|SHARP1|hDEC2	basic helix-loop-helix family member e41	protein-coding	nan	nan	nan	3.053	0.193	0.080	0.067	0.846	0.059	0.268	0.172	0.059	1.018	0.183	0.120	0.765	1.399	0.796	1.534	0.365	0.395	0.689	0.188	6.012	6.435	1.027	1.333	1.138	1.613	0.893	0.671	4.221	5.897	0.097	0.202	0.752	1.115	0.417	0.311	0.053	0.442	0.050	0.097	0.067	0.059	0.238	0.553	5.376	0.429
246	chr1	40504368	40510125	+	0	NA	intron (NM_001330502, intron 1 of 12)	MIRc|SINE|MIR	991	NM_006367	10487	Hs.370581	NM_006367	ENSG00000131236	CAP1	CAP|CAP1-PEN	adenylate cyclase associated protein 1	protein-coding	25.289	2.940	nan	16.302	2.807	1.387	61.865	3.697	0.464	2.622	1.204	7.500	9.375	3.848	0.141	2.399	2.896	4.104	6.630	6.060	5.544	3.946	1.502	7.246	7.520	4.132	nan	10.618	13.784	3.551	3.418	2.265	nan	1.866	2.113	3.414	5.444	4.135	1.816	3.531	2.455	0.351	16.381	61.865	7.500	1.179	2.100	1.081	1.787
7695	chr8	61589706	61595439	+	0	NA	intron (NM_017780, intron 1 of 37)	CpG	1248	NM_017780	55636	Hs.20395	NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding	12.127	2.635	9.378	7.443	6.409	3.551	5.130	0.066		2.940	1.455	10.499	9.424	3.614	0.062	2.890	4.278	2.994	3.783	17.849	13.990	6.758	2.272	2.197	1.944	3.754	nan	5.425	8.392	nan	13.910	1.739	6.915	10.140	10.132	9.317	6.376	4.489	2.607	2.715	5.743	2.912	4.223	5.130	10.499	1.005	6.923	1.605	3.111
7937	chr8	131310884	131320245	+	0	NA	intron (NM_001247996, intron 4 of 30)	intron (NM_001247996, intron 4 of 30)	-6785	NR_002765	29065	Hs.639318	NR_002765		ASAP1-IT1	ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050	ASAP1 intronic transcript 1	ncRNA	nan	1.228	3.733	0.539	0.721	0.568	0.300	1.268	0.125	0.366	0.203	0.695	0.751	0.047	0.087	0.969	1.458	0.264	0.600	1.223	1.494	3.175	0.734	nan	1.420	2.445	2.909	1.878	1.841	1.839	1.542	0.847	1.984	3.878	6.233	0.917	3.257	1.988	1.075	0.642	0.863	1.307	0.610	0.300	0.695	0.429	1.037	1.765	1.017
5610	chr3	154040705	154044683	+	0	NA	promoter-TSS (NM_020865)	promoter-TSS (NM_020865)	-408	NM_001114397	170506	Hs.446270	NM_020865	ENSG00000174953	DHX36	DDX36|G4R1|MLEL1|RHAU	DEAH-box helicase 36	protein-coding	nan	3.036	1.823	5.627	4.410	2.375	2.638	2.131	0.212	2.733	1.268	3.039	2.860	1.436	0.105	7.239	6.621	14.419	11.467	5.425	4.115	10.061	4.614	11.024	10.649	4.001	nan	3.455	6.555	8.857	8.312	6.086	9.889	1.979	2.462	4.770	4.126	3.256	2.412	1.412	1.647	0.215	2.230	2.638	3.039	0.905	1.124	3.559	1.116
4001	chr19	19684320	19692807	+	0	NA	intron (NR_038198, intron 2 of 7)	AluSc|SINE|Alu	39489	NM_153221	148113	Hs.279574	NM_153221	ENSG00000160161	CILP2	CLIP-2	cartilage intermediate layer protein 2	protein-coding	2.717	0.795	1.332	1.069	1.456	0.794	0.542	0.160	0.152	0.662	0.474	0.225	0.365	0.090	0.095	0.656	0.779	0.398	0.403	0.554	0.732	9.129	2.438	0.361	0.328	0.874	1.087	0.327	0.467	3.906	4.352	0.244	0.327	2.722	3.918	1.144	2.916	3.906	1.560	0.072	0.142	0.949	0.101	0.542	0.225	0.308	0.047	0.035	0.814
2227	chr12	133531026	133534110	+	0	NA	intron (NM_183238, intron 1 of 4)	C-rich|Low_complexity|Low_complexity	300	NM_183238	100289635	Hs.29698	NM_183238	ENSG00000196458	ZNF605	-	zinc finger protein 605	protein-coding	2.238	1.244	1.489	1.568	1.880	0.677	1.842	0.707	0.103	1.473	0.670	2.469	3.849	3.769	0.147	0.315	0.661	0.348	0.372	3.186	2.594	3.651	1.300	4.959	4.873	0.796	1.367	nan	3.969	1.917	2.414	1.247	1.817	1.367	0.862	1.747	2.376	0.143	0.174	2.421	0.551	0.217	12.570	1.842	2.469	0.712	1.976	0.805	1.248
3241	chr17	2444966	2467505	+	0	NA	Intergenic	HAL1|LINE|L1	-40688	NM_000430	5048	Hs.77318	NM_000430	ENSG00000007168	PAFAH1B1	LIS1|LIS2|MDCR|MDS|NudF|PAFAH	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein-coding	1.271	0.790	0.872	0.149	0.291	0.178	0.210	0.073	0.180	0.062	0.072	0.146	0.432	0.063	0.103	0.444	0.393	0.230	0.382	0.388	0.457	0.547	0.247	0.234	0.314	0.265	0.526	0.235	0.348	0.854	0.581	0.137	0.208	0.063	0.082	1.409	4.673	0.337	0.370	0.093	0.124	0.030	0.035	0.210	0.146	0.077	0.158	0.079	1.013
1168	chr10	82212562	82235156	+	0	NA	intron (NM_030927, intron 1 of 8)	intron (NM_030927, intron 1 of 8)	9821	NM_001128309	81619	Hs.718943	NM_030927	ENSG00000108219	TSPAN14	DC-TM4F2|TM4SF14	tetraspanin 14	protein-coding	1.814	3.572	4.883	1.190	0.956	0.411	1.025	0.340	0.114	0.200	0.123	3.069	5.569	0.427	0.074	4.126	5.254	1.554	2.996	2.447	2.018	1.106	0.385	1.300	1.224	1.605	2.140	5.804	6.683	2.164	2.434	1.140	2.189	1.397	1.351	1.433	2.961	0.878	0.555	3.601	1.239	0.229	0.636	1.025	3.069	0.396	0.161	1.282	0.634
7769	chr8	81109798	81125018	+	0	NA	Intergenic	AluSx3|SINE|Alu	-33514	NM_001287144	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding	1.645	nan	nan	1.236	1.859	0.792	0.320	0.305	0.138	0.411	0.323	0.717	1.075	0.150	0.090	0.746	0.745	0.369	0.703	0.835	1.175	6.370	2.071	0.251	0.250	1.494	1.911	nan	3.478	1.180	1.241	0.214	0.450	0.750	0.635	0.604	1.025	3.832	1.976	0.851	0.315	0.125	1.014	0.320	0.717	0.037	1.710	0.120	0.087
536	chr1	151029768	151038070	+	0	NA	intron (NM_006818, intron 1 of 1)	intron (NM_006818, intron 1 of 1)	1768	NM_006818	10962	Hs.75823	NM_006818	ENSG00000213190	MLLT11	AF1Q	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11	protein-coding	nan	nan	5.423	3.931	3.932	1.674	4.053	2.579	0.542	3.299	1.557	4.232	16.126	3.594	0.132	6.905	5.878	3.648	5.477	9.770	nan	8.360	2.268	14.753	16.019	5.224	6.396	8.783	12.814	4.540	4.351	4.239	8.179	5.151	6.058	5.529	7.075	3.115	1.268	4.188	4.304	0.992	1.937	4.053	4.232	1.182	4.406	3.554	2.179
8319	chr9	136704545	136709965	+	0	NA	intron (NM_001134398, intron 3 of 29)	intron (NM_001134398, intron 3 of 29)	-102178	NM_007101	1757	Hs.198003	NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding	2.275	0.841	1.310	2.669	1.531	0.770	2.237	0.124		1.247	0.703	1.695	0.896	0.020	0.044	0.242	0.357	0.236	0.321	1.928	2.416	nan	0.312	1.067	0.956	0.241	0.307	2.295	3.526	2.173	2.658	1.497	2.163	2.756	3.339	0.483	0.733	2.378	1.222	0.359	0.593	1.211	2.804	2.237	1.695	3.729	1.211	2.691	0.276
7917	chr8	125714978	125742061	+	0	NA	intron (NM_014751, intron 1 of 13)	intron (NM_014751, intron 1 of 13)	12229	NM_001282971	9788	Hs.336994	NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS1, I-BAR domain containing	protein-coding	nan	nan	nan	2.104	1.194	0.744	0.443	0.115	0.097	0.544	0.319	2.575	nan	0.149	0.074	1.849	3.108	0.760	0.724	2.435	2.298	2.692	0.981	nan	nan	0.841	1.298	1.679	2.147	1.103	1.190	1.871	3.370	0.503	0.469	0.672	1.212	1.405	0.833	1.077	1.276	0.152	0.653	0.443	2.575	0.541	0.552	2.032	0.474
1767	chr12	2984913	2988512	+	0	NA	promoter-TSS (NM_001243089)	promoter-TSS (NM_001243089)	347	NM_001252500	83695	Hs.198853	NM_001252499	ENSG00000171792	RHNO1	C12orf32|HKMT1188|RHINO	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	7.407	nan	5.308	13.444	6.583	3.126	5.721	5.220	0.633	4.330	2.083	9.321	17.102	7.683	0.331	4.247	3.960	9.484	12.165	16.871	13.740	12.276	5.663	13.920	14.242	5.924	8.010	8.775	18.957	6.204	5.700	3.166	5.560	8.468	9.203	6.990	9.094	2.821	1.764	6.801	6.906	1.743	6.052	5.721	9.321	3.051	1.579	1.511	3.298
7497	chr7	135512413	135531098	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-88161	NM_205855	389558	Hs.55200	NM_205855	ENSG00000189320	FAM180A	UNQ1940	family with sequence similarity 180 member A	protein-coding	nan	nan	nan	0.141	0.331	0.214	0.212	0.124	0.035	0.152	0.171	0.301	0.259	0.061	0.150	0.580	0.420	0.238	0.368	0.265	0.310	nan	1.166	0.253	0.343	0.221	nan	0.415	0.338	nan	0.168	0.229	0.329	0.407	0.396	0.673	1.671	1.387	nan	0.100	0.512	0.097	0.209	0.212	0.301	0.280	0.065	0.088	0.225
2237	chr13	22649048	22660378	+	0	NA	Intergenic	Intergenic	-129711	NR_103810	100506622	Hs.255773	NR_103810	ENSG00000276476	LINC00540	-	long intergenic non-protein coding RNA 540	ncRNA	0.639	0.825	0.615	0.784	0.584	0.335	0.193	0.158	0.135	0.279	0.145	1.966	0.858	0.209	0.073	0.508	0.442	0.235	nan	1.809	1.410	0.091	0.037	0.122	0.140	0.368	0.507	2.603	1.171	0.368	0.160	0.242	0.502	0.819	0.491	0.153	0.216	5.543	2.525	2.081	0.282	0.234	0.314	0.193	1.966		0.887	0.166	
5186	chr22	19553026	19568197	+	0	NA	Intergenic	AluSx3|SINE|Alu	-6249	NR_024381	150185	Hs.719752	NR_024381		LINC00895	-	long intergenic non-protein coding RNA 895	ncRNA	0.682	nan	0.564	0.148	0.240	0.200	0.351	0.079	0.064	0.289	0.148	0.144	0.366	0.072	0.070	0.302	0.314	0.208	0.323	0.419	0.473	0.577	0.215	0.401	0.341	0.192	0.379	0.673	0.632	0.415	0.247	0.183	0.166	0.190	0.334	0.183	0.201	2.772	1.739	0.026	0.088	0.025	0.026	0.351	0.144	0.077	2.034	0.013	0.050
5378	chr3	53871223	53886224	+	0	NA	intron (NM_018397, intron 1 of 8)	intron (NM_018397, intron 1 of 8)	1697	NM_018397	55349	Hs.126688	NM_018397	ENSG00000016391	CHDH	-	choline dehydrogenase	protein-coding	1.147	1.073	nan	0.487	0.191	0.117	0.120	0.111	0.044	0.200	0.169	0.287	0.845	0.123	0.086	3.204	4.197	3.281	3.696	0.706	0.581	1.235	0.442	1.895	1.985	0.859	1.187	1.405	1.712	nan	0.706	4.707	8.781	0.437	0.454	0.241	0.314	1.097	0.621	0.644	0.312	0.082	0.280	0.120	0.287	0.045	0.204	3.803	0.099
7125	chr7	1593364	1603046	+	0	NA	Intergenic	MIR3|SINE|MIR	-2139	NM_001097620	202915	Hs.592174	NM_152689	ENSG00000164855	TMEM184A	SDMG1	transmembrane protein 184A	protein-coding	1.981	1.577	8.459	1.293	1.907	0.840	1.096	0.129	0.060	1.678	1.032	5.027	nan	0.421	0.102	1.647	2.556	0.249	nan	6.541	6.254	nan	1.492	2.266	2.568	0.305	0.638	nan	6.680	1.982	2.044	1.163	1.249	2.653	2.278	0.786	1.757	2.301	1.265	1.378	2.079	0.649	1.299	1.096	5.027	1.487	2.664	0.672	0.411
6855	chr6	79784077	79792655	+	0	NA	promoter-TSS (NM_017934)	promoter-TSS (NM_017934)	-351	NM_017934	55023	Hs.511817	NM_017934	ENSG00000146247	PHIP	BRWD2|DCAF14|WDR11|ndrp	pleckstrin homology domain interacting protein	protein-coding	nan	nan	4.248	5.368	3.791	1.954	3.978	1.690	0.114	2.015	1.286	5.735	7.625	4.716	0.197	6.194	6.282	3.958	5.429	8.369	7.658	5.140	2.988	13.104	13.355	2.843	3.509	4.192	8.001	6.228	6.832	2.955	5.729	8.476	8.941	5.384	3.994	1.946	1.200	3.971	3.614	2.388	2.221	3.978	5.735	1.148	2.009	1.938	1.473
444	chr1	110648388	110681956	+	0	NA	Intergenic	LTR67B|LTR|ERVL	10110	NM_203412	164153	Hs.374027	NM_203412	ENSG00000186150	UBL4B	-	ubiquitin like 4B	protein-coding	nan	1.248	1.384	1.994	1.233	0.607	1.276	0.107	0.091	0.440	0.255	0.722	2.615	0.081	0.105	1.093	1.185	0.241	0.263	1.527	nan	5.036	2.450	0.385	0.407	0.339	0.669	4.486	5.092	0.532	0.383	0.760	0.808	0.835	1.207	0.200	0.276	1.492	0.991	0.923	1.145	0.176	0.171	1.276	0.722	0.160	1.887	0.463	0.029
7677	chr8	53294380	53321035	+	0	NA	intron (NM_014682, intron 2 of 25)	intron (NM_014682, intron 2 of 25)	14732	NM_014682	9705	Hs.655499	NM_014682	ENSG00000147488	ST18	NZF3|ZC2H2C3|ZC2HC10|ZNF387	ST18, C2H2C-type zinc finger	protein-coding	1.237	nan	0.902	2.593	1.098	0.584	0.202	0.085	0.054	0.838	0.308	2.619	0.879	0.048	0.100	0.348	0.295	0.431	0.472	1.932	2.354	2.875	1.051	0.472	0.455	0.584	nan	1.635	1.132	0.459	0.284	0.224	0.331	0.345	0.415	0.217	0.344	3.137	1.681	0.022	0.354	0.035	0.036	0.202	2.619	0.095	1.540	0.092	0.079
508	chr1	147914429	147933351	+	0	NA	intron (NM_001037501, intron 18 of 19)	intron (NM_001037501, intron 18 of 19)	31529	NM_001135789	653598	Hs.534674	NM_001135789	ENSG00000263464	PPIAL4C	COAS-2	peptidylprolyl isomerase A like 4C	protein-coding	1.325	nan	1.083	1.123	0.448	0.273	0.504	0.561	0.226	0.997	0.538	1.053	6.626	2.144	0.198	1.323	1.177	1.282	1.998	1.834	1.823	0.913	0.233	10.356	9.944	0.728	1.037	1.353	1.758	0.739	0.610	4.235	4.678	1.192	1.342	0.689	1.398	0.881	0.685	0.878	2.609	0.765	0.185	0.504	1.053	0.046	3.167	4.328	0.405
8318	chr9	136547129	136581918	+	0	NA	intron (NM_001134707, intron 13 of 20)	AluSp|SINE|Alu	38956	NM_001134707	1757	Hs.198003	NM_007101	ENSG00000123453	SARDH	BPR-2|DMGDHL1|SAR|SARD|SDH	sarcosine dehydrogenase	protein-coding	nan	0.546	1.292	0.430	0.722	0.378	0.358	0.084	0.041	0.250	0.168	0.971	0.928	0.051	0.069	0.221	0.388	0.129	0.184	5.881	5.625	nan	0.240	0.143	0.141	0.065	0.151	2.166	2.544	3.798	5.468	0.242	0.265	0.282	0.304	0.372	0.858	0.884	0.550	2.494	0.707	0.082	0.050	0.358	0.971	0.268	0.753	0.051	0.139
4025	chr19	34764561	34770687	+	0	NA	intron (NM_014686, intron 1 of 13)	intron (NM_014686, intron 1 of 13)	22168	NM_014686	9710	Hs.330073	NM_014686	ENSG00000166398	KIAA0355	-	KIAA0355	protein-coding	1.136	0.877	0.950	0.469	0.482	0.126	0.184	0.293	0.104	0.177	0.145	0.196	1.446	0.090	0.163	6.002	6.027	8.308	7.219	0.381	0.504	0.890	0.238	0.745	0.786	0.481	0.787	0.890	1.101	nan	0.305	2.086	3.135	0.215	0.321	0.432	0.814	1.085	0.719	0.101	0.150	0.047	0.077	0.184	0.196	0.163	0.033	0.717	0.123
1089	chr10	29885637	29926148	+	0	NA	intron (NM_003174, intron 3 of 35)	AluSx|SINE|Alu	-14617	NR_030634	100126327		NR_030634	ENSG00000216035	MIR938	MIRN938|hsa-mir-938	microRNA 938	ncRNA	0.733	1.314	1.576	0.095	4.202	2.239	0.258	1.746	0.328	0.155	0.177	1.290	1.378	0.062	0.083	0.281	0.250	0.647	2.007	0.610	0.662	1.382	0.371	0.324	0.329	0.850	1.211	0.674	0.863	0.191	0.129	0.147	0.250	0.352	0.396	0.234	0.423	0.890	0.479	0.091	0.349	0.035	0.186	0.258	1.290	0.098	0.123	0.076	0.027
12	chr1	1232952	1251121	+	0	NA	intron (NM_030649, intron 1 of 23)	intron (NM_030649, intron 1 of 23)	1233	NM_030649	116983	Hs.535257	NM_030649	ENSG00000131584	ACAP3	CENTB5	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	2.787	nan	7.821	2.336	1.592	0.696	0.981	0.636	0.080	1.138	0.501	1.266	3.083	0.823	0.078	2.722	4.484	1.213	2.009	4.211	3.676	1.256	0.641	4.248	4.110	3.353	nan	nan	11.324	nan	2.899	1.347	2.002	1.088	1.185	4.102	6.114	1.105	0.654	1.737	2.801	0.297	0.989	0.981	1.266	1.293	1.680	0.662	1.993
1554	chr11	82866479	82873457	+	0	NA	intron (NM_001346414, intron 1 of 15)	intron (NM_001346414, intron 1 of 15)	1831	NM_015885	51585	Hs.128959	NM_015885	ENSG00000165494	PCF11	-	PCF11 cleavage and polyadenylation factor subunit	protein-coding	2.855	2.179	2.709	3.904	4.112	1.883	2.340	2.460	0.482	2.599	1.368	3.533	8.418	4.213	0.210	5.245	5.531	4.919	6.851	6.904	6.297	6.626	2.417	19.123	20.756	4.436	4.895	4.590	6.849	5.745	5.597	3.679	6.458	4.821	5.891	3.270	4.628	2.500	1.437	2.496	2.575	1.429	2.233	2.340	3.533	0.349	2.315	2.475	1.520
2168	chr12	118568587	118575515	+	0	NA	Intergenic	Intergenic	-1638	NM_002567	5037	Hs.433863	NM_002567	ENSG00000089220	PEBP1	HCNP|HCNPpp|HEL-210|HEL-S-34|HEL-S-96|PBP|PEBP|PEBP-1|RKIP	phosphatidylethanolamine binding protein 1	protein-coding	nan	nan	1.802	2.004	1.871	0.801	1.799	0.625	0.326	1.314	0.742	6.258	2.256	1.229	0.171	2.097	2.131	2.854	4.530	nan	nan	nan	1.309	3.209	3.288	1.733	2.537	nan	8.182	2.346	2.774	1.553	2.998	2.295	2.166	2.652	3.308	nan	1.780	2.943	1.362	0.342	0.537	1.799	6.258	0.655	1.528	0.542	0.692
3707	chr18	28521588	28527127	+	0	NA	Intergenic	Intergenic	98424	NM_001941	1825	Hs.41690	NM_001941	ENSG00000134762	DSC3	CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP	desmocollin 3	protein-coding	0.528	0.687	0.871	0.096	0.137	0.058	0.138	0.055	0.029	0.057	0.060	0.043	0.291	0.019	0.112	1.013	0.571	9.564	nan	0.371	0.494	0.143	0.155	0.236	0.321	0.133	0.207	0.412	0.485	0.299	0.089	0.115	0.241	0.076	0.111	0.090	0.177	0.849	0.816	0.020	0.096	0.016		0.138	0.043	0.017	0.036	0.071	0.044
3518	chr17	70301089	70308463	+	0	NA	Intergenic	Intergenic	-34176	NR_135222	146795	Hs.651743	NR_135222	ENSG00000264026	LINC02003	-	long intergenic non-protein coding RNA 2003	ncRNA	1.053	0.865	0.585	0.727	0.719	0.304	0.275	0.132	0.087	0.149	0.112	0.455	0.559	0.059	0.084	2.420	3.832	8.652	2.491	0.435	0.430	0.566	0.263	1.280	1.479	nan	1.012	0.698	0.809	0.498	0.318	1.082	1.800	0.156	0.219	0.242	0.189	nan	0.713	0.016	0.054	0.030	0.127	0.275	0.455	0.054	0.081	0.728	0.034
6852	chr6	76641332	76656963	+	0	NA	intron (NM_001563, intron 14 of 16)	L1PA4|LINE|L1	133248	NM_001563	3617	Hs.590893	NM_001563	ENSG00000112706	IMPG1	GP147|IPM150|SPACR|VMD4	interphotoreceptor matrix proteoglycan 1	protein-coding	nan	nan	2.144	0.241	0.289	0.062	0.441	0.163	0.168	0.079	0.104	0.153	0.396	0.076	0.134	0.452	0.413	3.040	2.537	0.343	0.353	9.346	2.972	0.267	0.254	0.079	0.148	0.170	0.203	0.329	0.102	0.192	0.296	2.024	1.987	0.194	0.422	0.689	0.575	0.022	0.045	0.510	0.710	0.441	0.153	0.006	0.137	0.025	0.079
7463	chr7	122520224	122528213	+	0	NA	intron (NM_001009571, intron 1 of 27)	intron (NM_001009571, intron 1 of 27)	2595	NM_001167940	93664	Hs.649459	NM_017954	ENSG00000081803	CADPS2	CAPS2	calcium dependent secretion activator 2	protein-coding	1.077	1.533	2.672	4.871	4.980	2.110	0.354	0.140	0.162	1.184	0.815	6.726	3.832	0.108	0.203	1.107	1.008	1.467	1.831	3.355	2.725	6.042	3.332	2.203	2.136	0.185	0.296	2.741	4.339	1.038	1.071	0.630	1.153	4.168	4.202	0.946	1.744	2.802	1.732	0.048	2.416	1.479	1.300	0.354	6.726	0.180	2.969	0.210	0.171
6457	chr5	136626586	136644785	+	0	NA	intron (NM_004598, intron 2 of 10)	L1MEf|LINE|L1	171799	NR_134246	105379192	Hs.124611	NR_134246		LOC105379192	-	uncharacterized LOC105379192	ncRNA	0.825	0.901	nan	0.433	0.822	0.466	0.140	0.216	0.088	0.111	0.065	1.303	2.206	0.048	0.130	0.257	0.307	0.205	0.224	1.438	1.168	1.728	0.232	0.249	0.282	1.993	2.632	2.822	2.667	0.560	0.346	0.291	0.408	2.395	3.406	0.361	1.348	1.034	0.560	0.949	0.216	0.493	0.227	0.140	1.303	0.383	0.782	0.158	0.287
3343	chr17	27464604	27477564	+	0	NA	intron (NM_001346765, intron 2 of 42)	Tigger15a|DNA|TcMar-Tigger	-3687	NM_001346768	399687	Hs.462590	NM_078471	ENSG00000196535	MYO18A	MAJN|MYSPDZ|SP-R210|SPR210	myosin XVIIIA	protein-coding	nan	nan	nan	0.272	1.124	0.494	0.513	0.703	0.162	0.253	0.190	0.724	1.520	0.548	0.195	1.167	1.459	0.591	1.058	1.433	1.718	1.852	0.604	1.341	1.433	0.994	1.372	2.033	2.266	7.133	5.811	1.390	1.621	0.468	0.437	0.816	nan	0.980	0.667	0.797	0.479	0.044	0.262	0.513	0.724	0.639	0.566	0.565	0.587
6431	chr5	123728672	123750841	+	0	NA	intron (NR_125774, intron 3 of 5)	intron (NR_125774, intron 3 of 5)	34457	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA	nan	1.092	0.744	0.307	0.518	0.225	0.144	0.535	0.150	0.274	0.175	0.178	0.338	0.147	0.129	1.101	1.037	4.759	5.812	0.421	0.490	4.579	2.010	2.360	2.467	0.532	0.685	0.850	0.651	0.471	0.207	0.413	0.829	0.963	1.061	0.235	0.621	0.516	0.399	0.149	0.212	0.081	0.233	0.144	0.178	0.048	0.429	0.490	0.106
6951	chr6	125511723	125525543	+	0	NA	intron (NM_001003395, intron 1 of 6)	LTR83|LTR|ERVL	-6152	NM_001318907	7164	Hs.591347	NM_003287	ENSG00000111907	TPD52L1	D53	tumor protein D52-like 1	protein-coding	0.953	0.845	1.001	0.172	0.252	0.104	0.211	2.264	0.139	0.138	0.148	0.095	0.636	0.165	0.096	0.391	0.272	0.587	1.369	0.355	0.430	1.634	0.421	0.570	0.492	0.620	0.927	0.259	0.214	0.650	0.285	0.097	0.129	2.516	4.140	0.478	1.399	0.680	0.562	0.256	0.096	0.594	0.012	0.211	0.095	0.035	0.444	0.022	0.240
4036	chr19	36618164	36633505	+	0	NA	Intergenic	L2a|LINE|L2	-4994	NM_001003962	826	Hs.515371	NM_001749	ENSG00000126247	CAPNS1	CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1	calpain small subunit 1	protein-coding	3.036	2.613	2.387	5.283	3.164	1.561	1.562	1.145	0.404	1.061	0.447	6.208	15.385	3.948	0.216	1.100	1.642	2.057	3.452	3.615	3.189	5.516	1.540	4.254	4.414	1.472	2.088	2.737	3.849	nan	2.845	1.416	2.294	2.427	1.881	2.177	3.463	3.509	1.754	1.721	2.197	0.437	1.336	1.562	6.208	0.421	1.391	1.060	1.227
6315	chr5	71159847	71189040	+	0	NA	Intergenic	L1MA5A|LINE|L1	159453	NM_004291	9607	Hs.1707	NM_004291	ENSG00000164326	CARTPT	CART	CART prepropeptide	protein-coding	1.100	nan	1.394	0.096	1.253	0.510	0.406	0.223	0.121	0.101	0.115	0.082	0.796	0.067	0.121	0.191	0.188	0.229	0.268	0.275	0.334	nan	0.745	0.127	0.136	0.591	nan	0.570	0.579	1.109	0.732	0.114	0.250	3.698	4.439	0.818	2.662	0.902	0.560	0.136	0.762	1.005	0.094	0.406	0.082	0.129	0.133	0.170	1.538
3467	chr17	55480907	55504483	+	0	NA	intron (NM_170721, intron 5 of 9)	intron (NM_170721, intron 5 of 9)	108263	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA	1.783	1.785	1.669	2.624	4.615	2.489	1.416	0.153	0.048	1.034	0.565	2.352	1.505	0.055	0.112	1.732	2.620	3.489	4.740	2.470	2.675	3.915	1.244	nan	1.712	1.441	1.779	nan	nan	0.813	0.547	0.588	1.281	3.197	4.640	1.512	3.315	2.353	1.252	0.593	1.041	0.931	1.104	1.416	2.352	0.427	1.184	0.709	2.010
1522	chr11	73561588	73589375	+	0	NA	non-coding (NR_134658, exon 7 of 7)	non-coding (NR_134658, exon 7 of 7)	-12263	NM_001267806	80227	Hs.525017	NM_025155	ENSG00000175575	PAAF1	PAAF|Rpn14|WDR71	proteasomal ATPase associated factor 1	protein-coding	nan	1.115	1.015	0.944	0.971	0.542	0.880	0.396	0.186	0.426	0.272	0.817	1.572	0.701	0.123	1.959	1.618	1.095	1.428	1.887	1.885	1.826	0.718	4.138	4.557	1.479	2.025	1.786	2.537	1.435	1.386	1.182	1.791	1.227	1.478	0.953	1.522	1.599	0.929	2.550	0.644	0.164	0.361	0.880	0.817	0.291	0.546	0.548	0.413
136	chr1	23340403	23348418	+	0	NA	Intergenic	AluSz|SINE|Alu	-1531	NM_015013	23028	Hs.591518	NM_015013	ENSG00000004487	KDM1A	AOF2|BHC110|CPRF|KDM1|LSD1	lysine demethylase 1A	protein-coding	5.435	2.038	nan	4.223	2.523	1.400	2.527	1.061	0.241	1.975	0.809	1.541	4.917	1.775	0.188	3.634	3.940	2.507	3.721	6.087	5.150	4.011	1.512	8.136	7.625	4.106	5.846	4.116	8.846	6.514	8.986	3.012	5.503	2.203	1.957	6.934	5.421	2.339	1.585	2.429	2.438	0.358	1.460	2.527	1.541	0.836	1.123	1.740	1.554
116	chr1	18603295	18627877	+	0	NA	intron (NM_032880, intron 2 of 9)	intron (NM_032880, intron 2 of 9)	181346	NM_032880	84966	Hs.212511	NM_032880	ENSG00000117154	IGSF21	-	immunoglobin superfamily member 21	protein-coding	1.430	1.108	nan	0.054	1.108	0.593	1.639	0.076	0.053	0.324	0.173	0.503	0.932	0.073	0.098	1.379	2.118	0.153	0.181	1.584	1.249	0.098	0.049	0.555	nan	0.895	nan	4.178	4.808	nan	0.829	0.454	0.501	0.280	0.237	0.501	0.957	1.096	0.708	0.873	0.956	0.139	0.042	1.639	0.503	1.032	0.231	0.293	0.277
1197	chr10	103235727	103256033	+	0	NA	intron (NM_033637, intron 4 of 14)	intron (NM_033637, intron 4 of 14)	102147	NM_001308382	27343	Hs.523230	NM_013274	ENSG00000166169	POLL	BETAN|POLKAPPA	DNA polymerase lambda	protein-coding	nan	nan	1.400	0.225	0.541	0.284	1.176	0.155	0.110	0.463	0.388	0.391	0.530	0.054	0.095	0.437	0.407	0.631	0.809	0.874	1.201	1.549	0.425	0.218	0.135	3.912	nan	0.897	1.070	0.459	0.384	0.262	0.363	2.533	3.183	2.133	nan	1.320	0.595	0.139	0.618	0.756	0.258	1.176	0.391	0.081	0.065	0.174	1.823
6523	chr5	154970885	154991694	+	0	NA	Intergenic	T-rich|Low_complexity|Low_complexity	587974	NM_001099293	285643	Hs.567824	NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding	1.097	nan	1.128	0.131	0.212	0.170	0.074	0.083	0.046	0.068	0.108	0.212	0.301	0.053	0.094	0.274	0.168	0.162	0.239	0.261	0.311	0.148	0.075	0.080	0.047	0.326	0.479	0.524	0.513	1.440	1.108	0.108	0.168	0.421	0.397	1.221	4.721	0.572	0.514	0.059	0.112	0.087	0.125	0.074	0.212	0.093	0.038	0.024	3.360
4390	chr2	66652543	66665696	+	0	NA	non-coding (NR_046438, exon 2 of 4)	non-coding (NR_046438, exon 2 of 4)	1483	NR_046438	730198	Hs.526753	NR_046438		MEIS1-AS3	-	MEIS1 antisense RNA 3	ncRNA	3.209	1.090	nan	1.992	4.828	2.146	2.401	1.539	0.220	1.438	1.105	2.272	7.681	1.158	0.118	1.276	2.096	3.701	5.144	4.809	4.273	nan	1.678	2.062	1.937	1.606	2.193	4.661	5.926	1.865	2.010	0.498	1.864	3.386	2.447	2.593	3.570	1.043	0.549	2.511	2.866	0.992	1.099	2.401	2.272	0.543	2.316	0.594	1.641
308	chr1	53963592	53980879	+	0	NA	3' UTR (NM_147193, exon 10 of 10)	3' UTR (NM_147193, exon 10 of 10)	47163	NM_033067	63948	Hs.131654	NM_033067	ENSG00000143006	DMRTB1	-	DMRT like family B with proline rich C-terminal 1	protein-coding	1.180	0.680	1.231	0.148	0.406	0.250	2.006	1.239	0.204	0.186	0.142	0.172	1.171	0.050	0.075	0.554	0.840	0.584	0.840	2.621	2.409	0.502	0.221	0.464	0.505	2.353	2.621	1.264	1.783	0.859	0.784	0.624	1.088	0.679	0.492	0.730	nan	0.545	0.546	3.485	0.735	0.221	0.106	2.006	0.172	0.463	0.135	0.442	0.446
4604	chr2	175618396	175637833	+	0	NA	intron (NM_001039523, intron 1 of 9)	intron (NM_001039523, intron 1 of 9)	1086	NM_001039523	1134	Hs.434479	NM_000079	ENSG00000138435	CHRNA1	ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS	cholinergic receptor nicotinic alpha 1 subunit	protein-coding	1.565	0.868	2.770	0.140	0.326	0.144	0.164	0.207	0.041	0.082	0.150	0.475	0.505	0.050	0.058	0.420	0.398	0.226	0.295	1.155	1.235	0.683	0.205	0.290	0.359	0.952	1.208	1.461	1.969	2.760	2.449	0.163	0.233	0.124	0.127	2.254	6.671	0.518	0.422	0.245	0.174	0.020	0.874	0.164	0.475	0.257	0.152	0.045	1.849
3485	chr17	58101490	58115633	+	0	NA	Intergenic	Intergenic	11905	NR_039890	100616210		NR_039890	ENSG00000264049	MIR4737	-	microRNA 4737	ncRNA	2.704	1.585	1.767	0.540	1.131	0.556	0.939	0.639	0.172	0.366	0.352	0.858	3.195	5.094	0.187	1.404	1.650	1.633	3.208	1.630	1.394	1.837	0.511	nan	3.048	0.981	1.533	nan	nan	1.511	1.423	1.095	1.689	0.443	0.428	1.079	1.810	0.822	0.552	0.197	0.257	0.055	0.828	0.939	0.858	0.447	0.569	0.323	0.342
7142	chr7	5592135	5611029	+	0	NA	Intergenic	AluSz|SINE|Alu	-30854	NM_003088	6624	Hs.118400	NM_003088	ENSG00000075618	FSCN1	FAN1|HSN|SNL|p55	fascin actin-bundling protein 1	protein-coding	3.048	1.754	2.616	1.272	0.939	0.442	1.463	1.406	0.501	0.577	0.384	1.723	nan	4.012	0.211	1.955	1.799	1.781	nan	2.369	1.511	nan	0.970	4.201	4.347	1.269	1.894	nan	4.825	1.238	0.983	0.625	0.794	1.925	2.520	1.805	2.552	1.123	0.715	0.720	0.839	0.266	0.630	1.463	1.723	0.950	1.574	0.352	0.788
7314	chr7	69782181	69822861	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	738616	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding	nan	nan	nan	0.077	0.330	0.217	0.545	0.369	0.106	0.170	0.170	0.237	0.282	0.077	0.114	0.403	0.285	0.235	0.627	0.554	0.636	0.686	0.260	0.100	0.140	1.280	1.529	0.372	0.344	1.936	1.864	0.213	0.320	0.449	0.630	1.611	4.999	1.122	0.795	0.109	0.136	0.094	0.563	0.545	0.237	0.538	0.067	0.071	0.794
5968	chr4	90977442	90986975	+	0	NA	Intergenic	Intergenic	-66476	NM_001145065	401145	Hs.654735	NM_207491	ENSG00000184305	CCSER1	FAM190A	coiled-coil serine rich protein 1	protein-coding	0.664	0.642	0.560	0.110	0.335	0.203	0.134	0.071	0.135	0.083	0.079	0.038	0.315	0.056	0.116	5.351	4.523	13.310	6.658	0.189	0.345	0.029	0.031	5.332	5.449	0.339	0.516	0.329	0.395	0.404	0.133	2.461	3.410	1.300	1.232	0.201	0.437	0.185	0.259	0.035	0.093	0.271	0.084	0.134	0.038	0.020		1.060	0.039
5843	chr4	16225621	16230593	+	0	NA	promoter-TSS (NM_153365)	promoter-TSS (NM_153365)	54	NM_153365	202018	Hs.479223	NM_153365	ENSG00000169762	TAPT1	CMVFR|OCLSBG	transmembrane anterior posterior transformation 1	protein-coding	nan	nan	nan	5.021	1.336	1.067	3.636	2.529	0.290	3.775	1.448	9.319	4.236	1.952	0.091	4.441	5.835	6.985	10.659	5.702	5.501	5.518	3.285	15.734	14.988	1.669	2.354	4.113	8.065	3.276	3.473	3.075	7.830	2.349	1.559	2.290	1.901	nan	1.876	1.236	5.156	0.428	3.790	3.636	9.319	0.389	1.387	1.260	0.873
7635	chr8	31660263	31670793	+	0	NA	intron (NM_013962, intron 1 of 4)	L1MB1|LINE|L1	168260	NM_013962	3084	Hs.453951	NM_004495	ENSG00000157168	NRG1	ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF	neuregulin 1	protein-coding	1.016	1.331	nan	0.761	0.243	0.122	0.120	0.086	0.123	0.886	0.535	0.023	2.962	0.056	0.113	0.395	0.291	0.135	0.175	0.555	0.757	0.125	0.080	0.156	0.235	1.306	1.817	1.834	1.352	0.654	0.354	0.082	0.205	1.551	1.931	0.367	0.924	3.368	1.836	0.248	0.461	0.371	0.032	0.120	0.023	0.101	1.575	0.056	0.204
5295	chr22	45723376	45735291	+	0	NA	intron (NM_017911, intron 6 of 8)	AluY|SINE|Alu	23548	NM_017911	55007	Hs.265018	NM_017911	ENSG00000100376	FAM118A	C22orf8	family with sequence similarity 118 member A	protein-coding	1.478	nan	2.367	0.207	0.655	0.175	0.286	0.157	0.131	1.662	0.713	2.756	0.346	0.082	0.099	0.334	0.409	0.343	0.474	0.898	1.249	0.379	0.168	0.506	0.440	1.435	nan	1.443	1.894	nan	1.893	0.167	0.256	0.273	0.418	0.133	0.330	3.276	1.662	0.055	0.067	0.040	0.106	0.286	2.756	0.795	4.990	0.033	0.052
5992	chr4	112909577	112928740	+	0	NA	Intergenic	Intergenic	-147395	NM_152400	132720	Hs.23439	NM_152400	ENSG00000174749	C4orf32	-	chromosome 4 open reading frame 32	protein-coding	0.817	0.771	0.974	0.100	0.179	0.109	0.277	0.085	0.034	0.098	0.080	0.081	0.310	0.017	0.088	0.187	0.129	0.249	0.286	0.125	0.202	0.103	0.088	0.125	0.112	0.334	0.497	0.216	0.190	1.034	0.950	0.166	0.262	0.482	0.360	1.320	5.512	0.146	0.256	0.015	0.067	0.109	0.045	0.277	0.081	0.030	0.021	0.062	1.648
3027	chr16	2458072	2480789	+	0	NA	intron (NR_003574, intron 13 of 16)	L1MB8|LINE|L1	-9962	NM_001323538	899	Hs.1973	NM_001761	ENSG00000162063	CCNF	FBX1|FBXO1	cyclin F	protein-coding	1.303	nan	1.256	1.479	0.847	0.516	0.786	0.295	0.184	0.346	0.212	0.561	2.723	0.468	0.091	0.918	0.908	0.533	0.760	1.028	1.075	nan	1.030	1.290	1.297	0.769	nan	1.030	1.363	1.530	1.430	0.299	0.636	0.970	0.990	0.855	1.342	1.247	0.676	0.444	1.433	0.243	0.479	0.786	0.561	0.290	0.608	0.127	0.396
8301	chr9	133027329	133034998	+	0	NA	intron (NM_001291815, intron 1 of 86)	intron (NM_001291815, intron 1 of 86)	3005	NM_001291815	256158	Hs.32194	NM_144655	ENSG00000148357	HMCN2	-	hemicentin 2	protein-coding	nan	2.651	0.496	1.200	0.299	0.084	0.419	0.117	0.273	0.082	0.120	1.597	0.570	0.099	0.032	0.145	0.129	0.140	0.226	7.915	8.374	nan	0.368	0.116	0.088	0.184	0.264	2.162	3.288	2.048	2.234	0.103	0.277	0.214	0.399	0.226	0.424	1.695	0.940	7.392	0.335	0.013	0.021	0.419	1.597	0.290	0.094	0.066	0.064
301	chr1	51793848	51798376	+	0	NA	promoter-TSS (NM_001297664)	promoter-TSS (NM_001297664)	124	NM_001297663	22996	Hs.112949	NM_001080494	ENSG00000085831	TTC39A	C1orf34|DEME-6	tetratricopeptide repeat domain 39A	protein-coding	2.102	3.379	2.791	2.532	1.330	0.989	2.470	0.762	0.107	7.875	1.959	1.565	3.658	0.452	0.064	0.868	1.470	1.144	2.096	4.121	3.359	8.605	2.466	6.729	5.929	0.369	0.869	9.744	14.283	3.440	3.523	0.910	1.170	4.631	4.137	1.051	nan	4.000	2.367	1.463	0.790	0.506	1.232	2.470	1.565	1.038	4.011	0.304	0.328
8148	chr9	68407290	68419738	+	0	NA	Intergenic	Intergenic	-1794	NR_039689	100616194		NR_039689	ENSG00000266017	MIR4477B	-	microRNA 4477b	ncRNA	4.213	6.662	4.132	1.647	2.170	0.885	1.023	0.637	0.501	0.745	0.920	1.662	2.962	3.844	0.604	2.576	2.651	1.447	2.091	2.781	3.012	7.585	2.367	4.988	4.890	2.222	3.365	1.751	2.225	3.702	2.089	2.538	3.672	1.723	1.785	2.755	4.658	3.599	3.220	0.630	0.411	0.417	0.529	1.023	1.662	0.359	0.940	0.945	1.733
6573	chr5	180610562	180620108	+	0	NA	Intergenic	AluSp|SINE|Alu	3573	NR_108031	102577426	Hs.277359	NR_108031	ENSG00000248473	LINC01962	-	long intergenic non-protein coding RNA 1962	ncRNA	1.874	2.952	2.943	1.722	1.366	0.806	0.968	1.137	0.367	1.439	0.816	1.631	10.685	3.964	0.212	2.177	3.518	1.646	2.884	1.964	1.871	3.727	0.947	2.259	2.073	2.943	3.594	3.033	3.237	3.305	3.113	2.285	3.248	4.693	3.814	1.565	3.057	1.519	0.663	1.212	4.436	0.698	0.897	0.968	1.631	0.469	2.272	1.660	0.790
8207	chr9	95704066	95720950	+	0	NA	intron (NM_001083536, intron 1 of 17)	AluY|SINE|Alu	2907	NM_001083536	89846	Hs.411081	NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.905	nan	1.325	5.294	7.755	4.417	0.980	0.067	0.134	0.602	0.353	8.415	4.477	0.052	0.091	0.425	0.579	0.651	nan	7.831	8.209	2.726	0.731	0.237	0.236	0.144	0.259	1.557	2.151	1.160	1.050	0.269	0.368	1.574	1.918	0.282	0.516	2.700	1.389	1.077	0.723	0.220	0.708	0.980	8.415	0.161	0.336	0.053	0.045
4686	chr2	208115713	208131765	+	0	NA	Intergenic	Intergenic	-4699	NR_110283	101927865	Hs.574609	NR_110283		LOC101927865	-	uncharacterized LOC101927865	ncRNA	1.469	nan	2.449	0.301	2.163	1.026	0.543	0.788	0.160	0.166	0.132	0.399	4.045	0.195	0.074	2.176	2.645	0.579	0.885	0.261	0.306	0.535	0.198	1.497	1.606	6.217	6.493	0.460	0.464	1.186	1.441	0.698	1.108	3.311	4.107	1.264	3.756	0.369	0.284	1.988	1.025	1.296	0.149	0.543	0.399	0.503	0.360	0.819	0.854
1758	chr12	1097387	1103690	+	0	NA	non-coding (NR_027948, exon 1 of 20)	non-coding (NR_027948, exon 1 of 20)	164	NR_027946	23085	Hs.601216	NM_178039	ENSG00000082805	ERC1	Cast2|ELKS|ERC-1|RAB6IP2	ELKS/RAB6-interacting/CAST family member 1	protein-coding	5.551	nan	nan	7.742	2.807	1.802	2.996	5.278	0.373	2.874	1.450	2.377	7.690	4.478	0.185	2.642	3.180	4.538	6.406	nan	9.378	8.044	3.683	9.028	9.890	6.379	7.872	5.444	9.201	5.772	6.237	3.113	5.882	7.311	6.645	4.869	nan	4.623	2.312	2.557	3.480	1.422	4.542	2.996	2.377	3.031	1.149	2.130	1.454
3063	chr16	15236954	15248828	+	0	NA	Intergenic	Intergenic	5968	NR_037466	100500852		NR_037466	ENSG00000264115	MIR3180-4	mir-3180-4	microRNA 3180-4	ncRNA	1.889	1.575	nan	2.098	2.213	1.122	1.981	0.969	0.354	1.106	0.540	1.425	2.871	1.771	0.152	1.565	2.400	0.526	0.743	1.437	1.396	2.531	0.928	1.913	1.889	1.096	1.542	5.084	6.535	nan	1.537	1.011	1.920	0.966	0.973	0.995	1.336	1.239	0.811	0.693	1.302	0.363	0.812	1.981	1.425	0.525	3.124	0.871	0.438
7216	chr7	26691396	26713791	+	0	NA	Intergenic	Intergenic	23889	NM_001302625	285941	Hs.413394	NM_001145531		C7orf71	-	chromosome 7 open reading frame 71	protein-coding	2.501	1.280	3.405	2.722	1.514	0.760	1.706	0.174	0.115	1.425	1.005	0.214	0.987	0.117	0.179	0.880	0.800	0.539	nan	2.104	2.340	5.716	2.429	0.461	0.467	1.462	1.946	2.177	2.103	1.419	1.202	0.409	0.457	4.189	5.273	0.520	nan	2.341	1.116	0.875	1.117	1.394	0.867	1.706	0.214	0.347	0.115	0.136	0.442
6762	chr6	41377866	41399089	+	0	NA	Intergenic	AluSc5|SINE|Alu	-81705	NR_120347	103106903	Hs.563396	NR_120347	ENSG00000226917	LINC01276	-	long intergenic non-protein coding RNA 1276	ncRNA	1.701	0.925	1.213	0.959	2.271	1.226	0.591	0.175	0.106	0.361	0.201	1.644	1.203	0.182	0.103	2.028	2.794	0.695	0.750	1.192	1.287	3.071	1.013	1.219	1.284	0.182	0.337	2.054	nan	0.802	0.515	2.059	4.660	1.182	1.302	0.485	0.943	1.608	1.085	0.869	0.205	0.477	0.064	0.591	1.644	0.437	0.407	4.290	0.134
2258	chr13	31168733	31180056	+	0	NA	intron (NM_001313893, intron 1 of 4)	intron (NM_001313893, intron 1 of 4)	17340	NM_001313893	3146	Hs.434102	NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding	0.848	0.697	0.825	0.156	0.160	0.085	0.023	0.145	0.128	0.028	0.097	0.084	0.244	0.048	0.084	1.376	1.228	0.257	0.354	0.283	0.487	0.275	0.106	0.170	0.217	0.312	0.501	0.153	0.283	0.713	0.428	4.307	5.513	0.091	0.120	0.683	1.356	0.397	0.407	0.035	0.103	0.009	0.070	0.023	0.084	0.025	0.043	4.294	0.268
8221	chr9	100565059	100573489	+	0	NA	Intergenic	MIR|SINE|MIR	-46263	NM_004473	2304	Hs.159234	NM_004473	ENSG00000178919	FOXE1	FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2	forkhead box E1	protein-coding	1.123	1.983	1.621	2.198	1.024	0.552	2.607	0.144	0.119	0.909	0.465	0.309	2.769	0.310	0.059	1.086	1.382	1.259	4.045	2.292	1.979	5.708	2.816	1.051	1.219	0.442	0.738	1.879	nan	1.860	2.215	0.701	0.684	7.027	6.887	0.387	0.527	nan	0.929	0.334	0.697	2.204	0.386	2.607	0.309	0.687	0.188	0.211	0.029
796	chr1	203556708	203579724	+	0	NA	Intergenic	Intergenic	-27699	NM_001001396	493	Hs.343522	NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding	1.333	1.153	1.110	0.089	0.449	0.214	4.731	0.224	0.204	0.123	0.186	0.242	0.681	0.076	0.112	0.638	0.909	0.611	1.223	0.563	0.646	2.003	0.731	nan	nan	0.747	1.157	0.261	0.412	0.911	0.694	0.352	0.389	0.256	0.255	0.923	2.564	0.752	0.572	0.070	0.286	0.070	0.187	4.731	0.242	0.047	0.049	0.081	0.650
2349	chr13	77386135	77412502	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	61222	NM_138444	115207	Hs.644125	NM_138444	ENSG00000178695	KCTD12	C13orf2|PFET1|PFETIN	potassium channel tetramerization domain containing 12	protein-coding	nan	0.760	1.543	0.284	0.457	0.261	0.375	0.271	0.092	0.118	0.123	0.073	0.593	0.021	0.065	0.608	0.381	0.216	0.281	0.389	0.425	nan	2.083	0.128	0.116	0.237	0.294	0.492	0.782	nan	1.391	0.389	0.559	0.532	0.555	0.509	nan	0.276	0.137	0.008	0.101	0.145	0.100	0.375	0.073	0.238	0.076	0.249	0.259
5512	chr3	123671501	123680726	+	0	NA	intron (NM_022757, intron 1 of 11)	intron (NM_022757, intron 1 of 11)	4142	NM_022757	64770	Hs.645028	NM_022757	ENSG00000175455	CCDC14	-	coiled-coil domain containing 14	protein-coding	2.400	nan	1.797	1.909	2.525	1.476	0.998	1.668	0.124	0.953	0.664	2.286	2.268	0.547	0.137	5.130	6.494	2.203	2.985	3.305	3.189	5.307	2.366	1.044	0.966	3.136	nan	3.076	3.447	4.119	3.578	1.122	1.895	1.419	1.472	2.263	2.900	2.760	1.448	0.593	0.837	0.218	0.892	0.998	2.286	0.545	0.550	0.570	0.614
6081	chr4	174252870	174258061	+	0	NA	promoter-TSS (NM_001130689)	promoter-TSS (NM_001130689)	44	NM_001130688	3148	Hs.434953	NM_002129	ENSG00000164104	HMGB2	HMG2	high mobility group box 2	protein-coding	nan	nan	3.648	11.452	8.839	4.974	2.556	3.033	0.157	2.850	1.438	8.572	15.526	5.158	0.154	5.615	6.246	8.883	nan	12.146	10.275	7.987	4.535	8.558	8.193	4.296	5.548	7.107	9.937	10.266	13.556	2.330	5.945	7.464	7.843	7.499	7.843	2.494	1.315	4.879	4.848	2.340	7.293	2.556	8.572	1.269	1.595	2.421	2.855
1541	chr11	78042916	78114976	+	0	NA	intron (NM_080491, intron 1 of 9)	AluYk4|SINE|Alu	-26020	NM_012296	9846	Hs.429434	NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding	nan	1.142	0.771	0.407	2.307	1.193	0.711	0.346	0.109	0.821	0.388	0.483	1.038	2.617	0.189	1.096	1.160	3.403	3.804	1.424	1.584	2.661	1.209	0.750	0.729	0.553	0.819	0.442	0.441	0.406	0.236	0.726	1.379	1.026	1.144	0.735	2.378	1.319	0.887	0.986	1.424	0.268	0.351	0.711	0.483	0.091	0.139	0.689	0.394
4506	chr2	135355659	135408086	+	0	NA	intron (NM_030923, intron 2 of 7)	L1PA13|LINE|L1	94699	NM_030923	81615	Hs.369471	NM_030923	ENSG00000152128	TMEM163	DC29|SV31	transmembrane protein 163	protein-coding	nan	2.989	nan	0.254	0.210	0.107	0.120	0.080	0.080	0.115	0.113	0.087	0.387	0.029	0.081	0.268	0.156	0.181	0.196	0.218	0.301	0.611	0.251	0.105	0.091	0.197	0.329	0.916	nan	0.559	0.451	0.125	0.199	10.096	9.894	0.199	0.272	0.493	0.394	0.028	0.098	2.129	0.048	0.120	0.087	0.382	0.178	0.036	0.063
5136	chr21	43096649	43106545	+	0	NA	intron (NR_024367, intron 1 of 2)	intron (NR_024367, intron 1 of 2)	2135	NR_024367	54090	Hs.570442	NR_024367		LINC00111	C21orf21|NCRNA00111	long intergenic non-protein coding RNA 111	ncRNA	nan	1.308	3.571	0.799	0.689	0.419	0.330	0.904	0.502	0.252	0.141	1.001	2.496	0.055	0.035	0.920	1.576	2.663	9.877	0.631	0.595	nan	0.455	0.558	0.630	0.124	nan	2.183	2.549	0.491	0.234	0.859	0.772	1.238	1.130	0.295	0.455	1.112	0.789	0.881	0.310	0.286	0.193	0.330	1.001	0.115	0.558	0.380	0.115
5034	chr20	60919025	60963817	+	0	NA	intron (NM_005560, intron 1 of 79)	intron (NM_005560, intron 1 of 79)	947	NM_005560	3911	Hs.473256	NM_005560	ENSG00000130702	LAMA5	-	laminin subunit alpha 5	protein-coding	1.787	1.854	2.818	1.101	0.856	0.456	1.134	0.746	0.264	0.340	0.282	1.303	6.749	1.832	0.104	2.776	nan	0.662	1.037	1.929	1.781	2.351	0.715	2.704	2.848	1.652	2.377	2.830	4.192	1.870	1.696	1.218	1.942	0.473	0.525	0.974	1.673	1.487	0.905	1.195	1.103	0.148	0.524	1.134	1.303	0.365	2.990	0.682	0.319
4113	chr19	47742313	47761995	+	0	NA	Intergenic	Intergenic	-7577	NM_015603	26093	Hs.227782	NM_015603	ENSG00000105321	CCDC9	-	coiled-coil domain containing 9	protein-coding	1.972	1.656	1.675	1.000	1.540	0.619	1.431	1.157	0.271	0.844	0.404	0.960	2.107	2.476	0.207	0.905	1.132	1.306	2.705	1.525	1.434	4.361	1.912	3.710	4.051	1.423	2.061	3.201	4.162	1.904	1.577	0.928	0.851	1.514	1.951	1.198	2.723	1.700	0.986	0.690	0.890	0.297	0.346	1.431	0.960	0.373	0.867	0.216	0.461
4889	chr20	22428159	22455522	+	0	NA	Intergenic	Intergenic	-40559	NR_027089	284788	Hs.651993	NR_027089	ENSG00000204684	LOC284788	-	uncharacterized LOC284788	ncRNA	0.757	1.623	nan	2.764	4.425	2.341	0.533	0.118	0.052	2.530	1.152	2.353	2.162	0.032	0.067	0.504	0.241	0.111	0.154	3.481	3.363	8.897	2.676	0.107	0.114	0.188	0.310	3.001	2.916	0.359	0.094	0.236	0.298	3.597	3.534	0.147	0.240	3.397	1.454	0.026	0.508	1.378	0.017	0.533	2.353	0.021	1.055	0.069	0.041
3044	chr16	7351590	7375131	+	0	NA	intron (NM_018723, intron 4 of 15)	intron (NM_018723, intron 4 of 15)	-19391	NM_145891	54715	Hs.459842	NM_018723	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog 1	protein-coding	0.670	nan	0.492	0.075	5.554	2.796	0.087	0.038	0.116	3.825	1.449	0.609	0.249	0.019	0.064	0.553	0.616	0.040	0.035	0.666	0.953	nan	0.735	0.078	0.089	0.102	nan	0.111	0.102	0.232	0.071	0.327	0.482	1.204	1.285	0.529	2.120	2.736	1.466	0.047	0.053	0.205	1.809	0.087	0.609	0.008	0.028	0.109	0.286
2108	chr12	103693052	103757606	+	0	NA	intron (NM_001099336, intron 4 of 5)	intron (NM_001099336, intron 4 of 5)	164459	NR_103526	374470	Hs.534649	NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding	0.775	1.357	nan	1.080	0.938	0.433	0.962	0.112	0.105	0.408	0.295	0.901	1.184	0.047	0.122	0.276	0.108	0.191	0.206	0.856	0.916	4.054	1.402	0.152	0.135	0.272	0.457	1.209	0.929	0.533	0.248	0.107	0.141	0.412	0.470	0.224	0.351	1.426	0.836	2.694	0.919	0.069	0.115	0.962	0.901	0.033	0.124	0.041	0.059
6703	chr6	31506258	31511458	+	0	NA	promoter-TSS (NR_003065)	promoter-TSS (NR_003065)	97	NR_003065	692199		NR_003065	ENSG00000265236	SNORD84	U84	small nucleolar RNA, C/D box 84	snoRNA	nan	4.192	5.137	7.528	8.044	5.062	8.399	3.933	0.589	2.889	1.577	8.779	13.279	5.411	0.293	10.781	8.748	10.205	nan	nan	12.893	9.847	7.982	15.836	17.029	6.208	7.270	13.771	19.154	12.196	11.255	8.368	12.604	8.565	10.508	8.618	9.174	5.137	2.117	4.844	4.460	1.504	3.974	8.399	8.779	1.645	3.715	3.774	3.739
7848	chr8	103247831	103253743	+	0	NA	promoter-TSS (NR_125415)	promoter-TSS (NR_125415)	272	NM_001172477	50484	Hs.512592	NM_015713	ENSG00000048392	RRM2B	MTDPS8A|MTDPS8B|P53R2	ribonucleotide reductase regulatory TP53 inducible subunit M2B	protein-coding	4.576	nan	nan	2.633	2.373	1.323	0.604	2.255	0.162	0.504	0.308	2.348	6.308	1.184	0.085	2.043	2.589	2.440	3.768	4.553	4.266	nan	1.804	8.004	8.245	1.577	nan	8.853	14.983	nan	2.227	1.270	2.990	1.521	1.279	2.173	nan	1.972	1.095	1.121	1.881	0.288	0.980	0.604	2.348	0.307	2.254	1.240	0.672
8231	chr9	108187743	108214818	+	0	NA	TTS (NM_001330731)	TTS (NM_001330731)	-9035	NM_001330739	83856	Hs.136901	NM_031919	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1 like	protein-coding	1.648	1.085	1.607	0.517	0.677	0.398	0.404	0.336	0.086	0.244	0.155	0.587	1.406	0.565	0.084	0.431	0.474	0.624	0.708	1.077	1.111	0.936	0.334	0.252	0.275	1.453	1.681	0.867	nan	5.177	3.813	0.190	0.442	1.332	1.584	1.953	5.639	nan	0.694	0.170	0.239	0.320	0.720	0.404	0.587	0.436	0.385	0.110	2.483
888	chr1	225750024	225773024	+	0	NA	intron (NM_018212, intron 1 of 13)	intron (NM_018212, intron 1 of 13)	79321	NM_001008493	55740	Hs.497893	NM_018212	ENSG00000154380	ENAH	ENA|MENA|NDPP1	enabled homolog (Drosophila)	protein-coding	1.792	nan	1.460	0.341	0.532	0.359	0.230	0.355	0.200	0.239	0.279	0.224	0.387	0.424	0.155	0.580	0.678	0.600	0.899	0.592	nan	0.510	0.240	0.964	0.884	1.061	1.312	0.734	0.686	1.612	1.106	0.224	0.427	0.158	0.169	2.747	6.823	0.535	0.447	0.161	0.142	0.037	0.630	0.230	0.224	0.058	0.040	0.129	1.535
7541	chr7	151384083	151402703	+	0	NA	intron (NM_016203, intron 3 of 15)	intron (NM_016203, intron 3 of 15)	40007	NM_001304527	51422	Hs.647072	NM_016203	ENSG00000106617	PRKAG2	AAKG|AAKG2|CMH6|H91620p|WPWS	protein kinase AMP-activated non-catalytic subunit gamma 2	protein-coding	1.014	1.692	nan	2.077	0.680	0.346	0.489	0.427	0.208	2.418	0.623	1.646	4.295	0.449	0.156	1.022	1.631	0.726	2.310	1.625	1.462	3.248	0.790	0.526	0.549	0.505	0.805	1.545	2.161	0.334	0.241	1.185	1.489	3.436	4.017	0.132	0.170	2.333	1.469	2.276	3.910	0.731	0.357	0.489	1.646	0.862	0.267	0.987	0.040
3743	chr18	37374891	37381090	+	0	NA	Intergenic	MER61-int|LTR|ERV1	-46031	NR_024391	647946	Hs.649350	NR_024391	ENSG00000267374	MIR924HG	LINC00669	MIR924 host gene	ncRNA	nan	0.818	2.753	4.347	2.360	1.318	1.288	0.484	0.185	0.101	0.123	0.789	4.298	1.102	0.119	0.348	0.132	0.276	0.277	4.326	3.597	11.507	4.114	2.268	2.334	2.780	3.329	nan	2.565	2.183	1.929	0.205	0.739	5.451	4.961	0.118	0.126	2.946	2.147	2.901	0.593	1.487	0.820	1.288	0.789	0.457	1.541	0.209	0.040
6123	chr5	756179	763832	+	0	NA	Intergenic	Intergenic	-66495	NM_007030	11076	Hs.481466	NM_007030	ENSG00000171368	TPPP	TPPP/p25|TPPP1|p24|p25|p25alpha	tubulin polymerization promoting protein	protein-coding	2.198	1.054	1.597	0.921	1.985	0.856	0.819	0.390	0.373	0.302	0.186	1.776	0.486	0.029	0.094	0.754	1.486	0.563	nan	1.426	1.256	1.177	0.642	0.128	0.079	0.589	1.207	nan	12.586	nan	2.649	0.494	0.503	0.201	0.220	0.073	0.114	1.386	nan	0.254	0.201	0.013	0.094	0.819	1.776	0.544	0.040	0.065	
3683	chr18	20702098	20724355	+	0	NA	Intergenic	AluSg|SINE|Alu	-1302	NM_001256438	91768	Hs.11108	NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding	1.401	1.147	1.545	1.264	1.172	0.468	2.686	0.855	0.217	1.007	0.519	3.311	1.611	0.400	0.094	2.750	3.613	1.238	nan	3.406	3.062	3.625	1.152	0.808	0.849	0.867	1.447	1.694	2.761	0.881	1.038	1.264	2.634	3.203	3.285	0.651	1.025	2.538	1.672	2.358	2.538	1.005	2.839	2.686	3.311	0.239	0.455	1.352	0.189
1161	chr10	80416247	80426370	+	0	NA	Intergenic	L2c|LINE|L2	394223	NR_073447	414243	Hs.55047	NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA	0.567	1.442	0.680	0.175	0.486	0.236	0.139	0.103	0.032	0.062	0.050	1.078	0.740		0.076	3.144	2.940	13.487	5.195	0.472	0.616	3.126	1.059	9.441	8.923	0.519	0.672	0.869	0.738	0.216	0.107	2.016	2.899	0.527	0.392	0.228	0.382	0.906	0.536	0.115	0.145	0.094	0.078	0.139	1.078	0.267	0.085	1.652	0.123
5940	chr4	77116774	77136334	+	0	NA	intron (NM_005506, intron 1 of 11)	L1MA8|LINE|L1	8498	NM_005506	950	Hs.349656	NM_005506	ENSG00000138760	SCARB2	AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII	scavenger receptor class B member 2	protein-coding	2.874	1.828	2.930	3.496	2.895	1.527	1.340	1.078	0.115	1.040	0.470	2.282	3.207	0.615	0.086	2.473	3.907	1.352	2.383	3.222	2.811	3.569	1.245	2.074	1.965	2.576	3.070	7.409	8.809	4.777	4.649	1.331	2.368	2.526	2.600	3.910	8.971	2.341	1.311	2.896	4.700	0.649	3.257	1.340	2.282	0.342	2.512	1.916	3.264
6628	chr6	16057229	16066833	+	0	NA	Intergenic	Intergenic	-67286	NM_013262	29116	Hs.484738	NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding	1.441	nan	1.051	2.486	2.998	1.754	1.775	0.170	0.162	1.130	0.479	3.586	1.081	0.029	0.091	0.619	0.707	0.366	0.444	2.042	1.513	7.299	1.931	0.330	0.284	0.394	0.585	2.224	1.887	0.891	0.624	0.413	0.676	1.899	2.047	0.602	0.928	2.244	1.256	0.252	0.666	0.476	0.156	1.775	3.586	0.465	1.556	0.361	0.157
3406	chr17	40167692	40180530	+	0	NA	intron (NM_001001349, intron 2 of 3)	AluSp|SINE|Alu	2024	NM_001144929	28511	Hs.632252	NM_017595	ENSG00000168256	NKIRAS2	KBRAS2|kappaB-Ras2	NFKB inhibitor interacting Ras like 2	protein-coding	3.400	2.514	nan	2.799	3.342	1.758	2.018	1.497	0.210	1.640	0.955	2.019	4.622	1.663	0.107	2.859	3.049	3.134	4.556	3.854	nan	5.197	2.334	7.674	8.019	2.291	3.012	3.651	nan	5.368	4.471	2.408	3.733	2.772	4.090	3.601	4.430	2.261	1.150	1.782	1.727	0.485	1.364	2.018	2.019	0.715	1.357	0.738	1.247
2853	chr15	41197920	41235245	+	0	NA	Intergenic	Intergenic	-4949	NM_019074	54567	Hs.511076	NM_019074	ENSG00000128917	DLL4	AOS6|hdelta2	delta like canonical Notch ligand 4	protein-coding	1.744	0.808	nan	1.784	1.753	0.901	1.200	0.325	0.125	0.816	0.284	2.773	1.806	0.332	0.058	1.324	1.876	0.925	1.345	2.546	2.409	2.364	0.682	0.897	0.975	0.523	nan	3.426	3.788	2.127	2.134	0.756	0.987	1.771	1.656	0.882	1.370	1.920	1.049	0.751	1.258	0.404	1.178	1.200	2.773	0.659	1.091	0.536	0.266
1380	chr11	34615081	34623055	+	0	NA	Intergenic	Intergenic	-23520	NM_012153	26298	Hs.653859	NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding	0.586	0.940	nan	0.116	0.518	0.315	0.269	0.426	0.040	0.119	0.126	0.352	0.891	0.056	0.160	3.527	4.115	7.719	2.643	0.280	0.377	1.106	0.389	0.658	0.699	0.260	0.380	0.330	0.180	0.333	0.161	1.080	1.941	0.161	0.145	0.222	nan	0.654	0.476	0.076	0.095	0.048	0.040	0.269	0.352	0.024	0.127	0.871	0.078
990	chr10	1577524	1618524	+	0	NA	intron (NR_033387, intron 1 of 1)	AluSx|SINE|Alu	29199	NR_033387	642394	Hs.568831	NM_001098830	ENSG00000205696	ADARB2-AS1	C10orf109|NCRNA00168|bA466B20.1	ADARB2 antisense RNA 1	ncRNA	0.497	0.389	0.629	0.776	0.819	0.356	0.270	0.086	0.137	0.689	0.364	3.736	0.832	0.043	0.089	0.610	0.837	0.123	0.161	1.601	1.466	0.710	0.275	0.219	0.267	0.099	0.194	2.463	3.196	0.193	0.105	0.394	0.712	0.030	0.036	0.082	0.111	0.649	0.444	0.944	0.871	0.009	0.051	0.270	3.736	0.103	0.332	0.280	0.027
349	chr1	66427973	66433590	+	0	NA	intron (NM_001037341, intron 3 of 16)	intron (NM_001037341, intron 3 of 16)	-27518	NM_001037340	5142	Hs.198072	NM_002600	ENSG00000184588	PDE4B	DPDE4|PDEIVB	phosphodiesterase 4B	protein-coding	1.107	0.847	nan	0.080	0.161	0.200	0.159	0.214	0.028	0.037	0.061	0.191	0.319	0.078	0.116	1.691	0.723	10.228	8.389	0.393	0.419	0.141	0.116	2.412	2.252	nan	nan	0.616	nan	0.414	0.097	1.851	3.305	0.047	0.083	0.299	0.966	0.568	0.649	0.031	0.207	0.017	0.081	0.159	0.191	0.054	0.329	1.096	0.136
4772	chr2	237648494	237666475	+	0	NA	Intergenic	Intergenic	179104	NM_020311	57007	Hs.471751	NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding	1.149	nan	1.992	0.241	0.568	0.327	0.406	0.240	0.045	0.026	0.045	0.240	1.577	0.036	0.094	3.019	4.176	0.487	0.709	1.267	1.268	0.146	0.084	0.732	0.828	1.004	1.526	1.097	nan	2.366	1.887	1.000	1.626	0.061	0.106	0.556	1.315	0.149	0.185	5.980	0.318	0.032	0.150	0.406	0.240	0.227	0.203	1.315	0.110
3970	chr19	12880074	12918971	+	0	NA	Intergenic	Intergenic	1580	NR_049864	100847071		NR_049864	ENSG00000263800	MIR5684	-	microRNA 5684	ncRNA	4.994	2.753	3.803	2.957	2.524	1.168	3.006	2.163	0.373	1.441	0.688	2.725	2.185	3.281	0.129	2.417	2.979	2.728	4.145	4.737	4.525	6.959	3.363	4.338	4.541	2.271	3.265	4.084	6.073	4.575	4.192	1.033	1.593	4.431	4.343	3.497	6.013	2.987	1.467	4.005	1.964	1.518	1.216	3.006	2.725	1.355	2.629	0.856	2.114
5162	chr21	45757814	45774079	+	0	NA	Intergenic	Intergenic	-6661	NM_001271441	755	Hs.517331	NM_004928	ENSG00000160226	C21orf2	LRRC76|YF5/A2	chromosome 21 open reading frame 2	protein-coding	nan	1.301	1.862	0.832	1.167	0.727	0.582	0.386	0.100	0.183	0.197	0.648	3.757	0.485	0.084	1.564	1.267	0.954	1.378	2.873	2.786	nan	0.807	2.109	2.214	0.672	nan	1.863	2.595	2.171	2.420	0.853	0.910	1.330	1.408	0.978	0.867	1.624	1.045	5.177	2.082	0.250	0.395	0.582	0.648	0.730	0.739	0.315	0.289
3364	chr17	32684695	32752857	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-28524	NM_002981	6346	Hs.72918	NM_002981	ENSG00000108702	CCL1	I-309|P500|SCYA1|SISe|TCA3	C-C motif chemokine ligand 1	protein-coding	nan	0.715	0.425	0.046	0.270	0.121	0.485	0.121	0.097	0.055	0.097	0.125	2.612	0.043	0.105	0.449	0.345	0.108	0.145	nan	1.005	0.142	0.077	0.145	0.128	0.141	0.250	0.146	0.181	nan	0.196	0.273	0.363	0.211	0.295	0.191	0.344	0.255	0.310	7.133	3.320	0.048	0.036	0.485	0.125	0.098	0.042	0.153	0.041
5675	chr3	173732123	173743861	+	0	NA	intron (NM_014932, intron 4 of 6)	intron (NM_014932, intron 4 of 6)	-99406	NR_046664	100874010	Hs.624265	NR_046664	ENSG00000228213	NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA	1.080	1.061	0.697	0.105	0.533	0.214	0.129	0.154	0.054	0.146	0.219	0.112	0.345	0.028	0.050	0.264	0.105	0.228	0.206	0.505	0.596	0.610	0.303	0.251	0.187	5.902	6.184	0.344	0.300	0.611	0.408	0.102	0.219	1.508	1.385	0.285	0.541	0.251	0.389	0.155	0.046	0.414	0.027	0.129	0.112	0.042	0.044	0.025	0.127
7101	chr6	168547022	168561205	+	0	NA	Intergenic	Intergenic	-71876	NR_110312	79981	Hs.266746	NM_024919	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding	0.826	nan	0.932	2.430	0.368	0.180	4.168	0.063	0.011	0.111	0.118	0.537	3.806	0.059	0.098	0.399	0.370	0.306	0.384	1.794	1.692	0.365	0.226	0.118	0.110	0.089	0.161	4.370	3.908	nan	0.546	0.481	0.580	0.098	0.076	0.107	0.154	0.918	0.673	0.729	0.470	0.027	0.056	4.168	0.537	0.057	0.112	0.091	0.088
3251	chr17	4881587	4892286	+	0	NA	intron (NM_015099, intron 3 of 22)	AluSx1|SINE|Alu	3729	NM_001171167	23125	Hs.632242	NM_015099	ENSG00000108509	CAMTA2	-	calmodulin binding transcription activator 2	protein-coding	1.831	1.189	1.513	0.534	1.209	0.688	0.621	0.557	0.161	0.513	0.311	1.758	1.563	0.903	0.120	5.925	7.484	5.469	3.012	2.942	2.808	2.566	0.776	6.844	7.274	1.269	1.754	1.710	2.023	1.425	1.398	1.892	2.992	0.637	0.489	1.462	2.802	0.899	0.580	1.528	1.106	0.115	0.726	0.621	1.758	0.738	1.561	0.970	0.707
7689	chr8	59755216	59771402	+	0	NA	intron (NM_014729, intron 4 of 8)	intron (NM_014729, intron 4 of 8)	-190905	NM_003580	8439	Hs.372000	NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding	1.509	nan	1.227	0.456	1.375	0.698	0.846	0.378	0.080	0.453	0.251	1.359	0.673	0.179	0.097	0.419	0.420	0.331	0.969	1.666	1.540	2.014	0.601	0.089	0.052	1.167	nan	1.920	2.017	0.476	0.270	0.085	0.125	0.694	0.990	0.221	0.425	1.590	0.972	0.620	3.997	0.160	0.425	0.846	1.359	0.012	0.487	0.023	0.354
5522	chr3	126852908	126902626	+	0	NA	Intergenic	L2b|LINE|L2	-34207	NM_001007534	285311	Hs.591284	NM_001007534		C3orf56	-	chromosome 3 open reading frame 56	protein-coding	1.346	nan	1.330	1.453	0.941	0.506	1.467	0.172	0.133	1.078	0.482	2.149	2.549	0.030	0.058	0.337	0.525	0.098	0.134	5.291	4.698	4.122	1.514	0.125	0.120	0.736	nan	3.207	3.035	0.964	0.758	0.491	0.657	0.696	0.685	0.643	1.506	2.278	1.251	2.793	3.017	0.164	0.638	1.467	2.149	0.346	0.389	0.280	0.178
860	chr1	214278712	214285286	+	0	NA	Intergenic	AluSz|SINE|Alu	120155	NM_002763	5629	Hs.741808	NM_002763	ENSG00000117707	PROX1	-	prospero homeobox 1	protein-coding	1.328	1.056	1.065	0.106	0.571	0.399	0.433	0.181	0.170	0.323	0.182	0.385	nan	0.065	0.126	1.444	2.025	8.101	4.658	0.643	0.712	nan	0.428	0.592	0.559	0.685	nan	0.761	0.650	0.343	0.198	0.647	0.639	0.143	0.161	0.402	1.211	1.240	0.860	0.068	0.013	0.015	0.690	0.433	0.385	0.031	0.092	0.111	0.354
2308	chr13	51721268	51746044	+	0	NA	intron (NR_102431, intron 1 of 4)	intron (NR_102431, intron 1 of 4)	12702	NR_102432	647166	Hs.195052	NR_102431		LINC00371	LINC00372	long intergenic non-protein coding RNA 371	ncRNA	1.061	nan	nan	0.124	0.144	0.077	0.155	0.130	0.059	0.108	0.081	0.113	0.391	0.048	0.061	0.654	0.464	0.225	0.240	0.447	0.559	nan	0.158	0.186	0.179	0.430	0.517	0.246	0.242	0.693	0.441	0.351	0.411	0.145	0.153	1.010	nan	0.236	0.257	0.018	0.097	0.015	0.100	0.155	0.113	0.066	0.082	0.073	0.954
4887	chr20	21915788	21926947	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-113361	NR_038394	100270679	Hs.385748	NR_038394	ENSG00000234435	LINC01432	-	long intergenic non-protein coding RNA 1432	ncRNA	0.585	1.000	nan	0.093	0.232	0.126	0.023	0.141	0.116	0.147	0.134	0.097	0.269	0.020	0.051	0.507	0.403	0.099	0.189	0.218	0.282	0.171	0.134	0.201	0.183	0.235	0.304	0.236	0.336	0.390	0.140	0.226	0.428	1.994	2.774	0.149	0.192	0.607	0.411	0.035	0.048	0.436		0.023	0.097		4.262	0.036	0.033
1567	chr11	90567500	90587215	+	0	NA	intron (NR_104190, intron 4 of 6)	intron (NR_104190, intron 4 of 6)	25013	NR_031663	100302228		NR_031663	ENSG00000221586	MIR1261	MIRN1261|hsa-mir-1261	microRNA 1261	ncRNA	0.487	nan	0.495	0.138	0.281	0.146	0.075	0.079	0.043	0.072	0.075	0.060	0.278	0.039	0.114	3.915	2.592	6.578	nan	0.243	0.438	0.126	0.095	0.613	0.621	0.730	0.834	0.400	0.362	0.423	0.182	2.011	2.364	0.170	0.335	0.295	nan	0.421	0.446	0.059	0.077	0.034	0.129	0.075	0.060	0.010	0.092	1.504	0.087
1063	chr10	21332798	21338908	+	0	NA	intron (NM_001173484, intron 2 of 6)	intron (NM_001173484, intron 2 of 6)	99635	NM_001010896	387638	Hs.664110	NM_001010896	ENSG00000204683	C10orf113	bA165O3.1	chromosome 10 open reading frame 113	protein-coding	0.542	0.820	0.452	0.192	0.329	0.210	0.141	0.122	0.080	0.144	0.079	0.137	0.290	0.438	0.113	1.683	0.841	7.332	1.586	0.282	0.236	2.854	0.666	0.285	0.217	0.167	0.185	0.284	0.305	0.217	0.088	0.416	0.559	0.164	0.239	0.163	0.254	0.315	0.312	0.028	0.080	0.016	0.091	0.141	0.137	0.016	0.099	0.379	0.062
7113	chr6	170572307	170608270	+	0	NA	Intergenic	L1MC5|LINE|L1	-4438	NR_126021	285804	Hs.651959	NR_126021	ENSG00000271820	LOC285804	-	uncharacterized LOC285804	ncRNA	nan	1.260	nan	2.335	3.649	1.855	1.933	0.065	0.042	0.737	0.461	6.679	1.768	0.283	0.078	1.489	1.713	1.333	1.949	nan	4.732	nan	2.026	2.600	2.510	0.072	0.191	nan	2.792	1.045	0.853	1.609	2.498	1.962	1.916	0.377	0.762	1.767	0.939	3.725	2.957	0.267	1.185	1.933	6.679	0.351	1.826	1.674	0.072
1776	chr12	3813670	3825042	+	0	NA	intron (NM_032680, intron 3 of 10)	intron (NM_032680, intron 3 of 10)	43010	NM_001144958	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding	1.863	nan	nan	0.620	0.447	0.337	0.239	0.111	0.128	0.222	0.186	0.526	0.549	0.086	0.113	0.165	0.231	0.064	0.107	nan	0.771	1.164	0.239	0.296	0.254	1.003	1.573	0.644	0.627	0.736	0.395	0.224	0.229	1.300	1.266	2.063	nan	0.854	0.575	0.127	0.142	0.258	4.822	0.239	0.526	3.720	0.017	0.018	1.532
7670	chr8	50157466	50170961	+	0	NA	Intergenic	Intergenic	179313	NM_001256597	492307	Hs.49890	NM_001007176	ENSG00000168333	C8orf22	-	chromosome 8 open reading frame 22	protein-coding	0.809	nan	0.768	0.131	0.179	0.048	0.161	0.055	0.035	0.453	0.299	0.044	0.281	0.032	0.131	0.309	0.211	0.183	0.268	0.920	0.568	0.173	0.066	0.100	0.130	0.237	nan	0.182	0.222	0.317	0.115	0.117	0.147	0.153	0.190	0.164	0.178	6.355	3.152	0.004	0.075	0.007	0.017	0.161	0.044	0.044	2.855	0.044	0.037
2565	chr14	37323309	37329054	+	0	NA	intron (NM_030631, intron 2 of 9)	intron (NM_030631, intron 2 of 9)	95415	NR_039725	100616280		NR_039725	ENSG00000266327	MIR4503	-	microRNA 4503	ncRNA	1.211	0.787	0.897	7.466	0.226	0.140	0.112	0.125	0.140	1.065	0.490	1.206	3.494	0.057	0.073	0.219	0.206	0.202	0.366	0.522	0.741	3.396	0.725	0.256	0.240	0.245	0.502	8.119	9.835	0.478	0.238	0.180	0.347	1.344	1.569	0.117	0.204	1.437	0.960	0.649	0.231	0.513	0.033	0.112	1.206		5.383	0.138	0.065
3047	chr16	8520823	8557127	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	48853	NM_001290098	283953	Hs.150849	NM_001146336	ENSG00000232258	TMEM114	-	transmembrane protein 114	protein-coding	0.467	nan	0.451	0.110	0.302	0.146	0.109	0.069	0.058	0.048	0.084	2.404	0.299	0.027	0.072	0.237	0.117	0.052	0.044	0.199	0.238	nan	0.098	0.106	0.127	0.145	nan	0.098	0.125	0.282	0.089	0.094	0.136	0.064	0.097	0.075	0.184	0.290	0.351	0.012	0.055	0.013	0.407	0.109	2.404	0.089	0.008	0.008	0.030
2158	chr12	116298328	116336195	+	0	NA	Intergenic	Intergenic	269198	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA	nan	nan	1.204	2.328	0.414	0.212	0.184	0.063	0.059	0.070	0.110	1.688	4.539	0.031	0.112	0.268	0.117	0.182	0.375	nan	nan	nan	0.053	2.087	2.213	0.185	0.294	nan	nan	0.331	0.182	0.168	0.340	0.074	0.104	0.512	1.156	nan	0.509	7.530	0.632	0.033	0.343	0.184	1.688	0.008	0.048	0.086	0.170
3829	chr18	54645933	54676087	+	0	NA	intron (NM_052834, intron 25 of 26)	intron (NM_052834, intron 25 of 26)	78340	NR_048536	100885779	Hs.742426	NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA	nan	1.028	1.062	0.381	0.360	0.234	0.746	0.124	0.097	0.452	0.201	0.389	0.821	0.068	0.079	0.663	0.857	0.186	0.300	0.648	0.838	1.268	0.438	0.538	0.489	1.478	1.680	0.502	0.554	0.541	0.283	0.223	0.265	1.634	2.282	0.344	0.785	nan	2.125	0.035	0.109	0.391	0.065	0.746	0.389	0.032	0.413	0.049	0.155
2362	chr13	86279685	86302422	+	0	NA	Intergenic	Intergenic	82430	NM_032229	84189	Hs.525105	NM_032229	ENSG00000184564	SLITRK6	DFNMYP	SLIT and NTRK like family member 6	protein-coding	nan	nan	0.615	0.316	0.258	0.106	0.261	0.136	0.078	0.959	0.684	0.096	0.425	0.010	0.097	0.509	0.334	0.180	0.268	0.541	0.455	5.862	3.782	0.108	0.154	0.065	0.074	1.375	1.344	0.357	0.145	0.187	0.309	0.593	0.442	0.307	0.491	0.125	0.067	0.012	0.027	0.079	0.144	0.261	0.096		1.036	0.082	0.038
7084	chr6	160208282	160217386	+	0	NA	intron (NR_134861, intron 2 of 3)	AluSx|SINE|Alu	1285	NR_134861	29074	Hs.416998	NM_014161	ENSG00000112110	MRPL18	HSPC071|L18mt|MRP-L18	mitochondrial ribosomal protein L18	protein-coding	3.678	nan	3.236	3.634	3.807	2.210	3.726	1.207	0.160	0.975	0.572	2.699	7.497	2.390	0.150	3.530	4.005	3.638	5.885	5.090	4.860	6.520	3.568	5.068	5.017	1.598	2.032	2.894	4.088	7.064	7.562	3.709	7.211	3.165	3.878	6.428	8.119	1.569	0.881	1.905	3.016	0.606	1.295	3.726	2.699	1.493	1.706	1.252	3.420
2796	chr14	105432677	105444667	+	0	NA	intron (NM_138420, intron 1 of 6)	intron (NM_138420, intron 1 of 6)	6022	NM_138420	113146	Hs.441783	NM_138420	ENSG00000185567	AHNAK2	C14orf78	AHNAK nucleoprotein 2	protein-coding	1.443	0.993	1.079	0.722	0.529	0.200	2.849	0.491	0.106	0.118	0.146	0.339	2.572	0.188	0.102	0.716	1.092	0.405	0.575	1.465	1.356	1.427	0.402	0.404	0.402	0.383	0.689	1.334	2.360	0.693	0.565	1.254	1.659	0.258	0.321	0.289	0.370	0.433	0.210	6.343	0.658	0.064	0.073	2.849	0.339	0.375	0.235	0.758	0.052
7076	chr6	158479483	158490272	+	0	NA	exon (NM_001178088, exon 8 of 26)	exon (NM_001178088, exon 8 of 26)	46797	NM_001178088	8871	Hs.434494	NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding	nan	1.580	1.531	0.463	0.588	0.286	0.497	0.746	0.253	0.234	0.115	0.943	2.431	0.101	0.100	1.025	1.574	1.000	3.106	0.635	nan	1.491	0.574	0.706	0.688	0.589	1.060	1.843	2.567	0.832	0.652	0.270	0.406	0.213	0.336	0.404	nan	0.456	0.454	5.222	0.244	0.080	0.081	0.497	0.943	0.311	0.142	0.064	0.280
5041	chr20	61545270	61571513	+	0	NA	promoter-TSS (NM_080796)	promoter-TSS (NM_080796)	-488	NM_001193370	11083	Hs.517172	NM_022105	ENSG00000101191	DIDO1	BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8	death inducer-obliterator 1	protein-coding	2.668	2.491	1.735	1.703	1.740	0.965	1.491	1.312	0.245	0.830	0.432	1.967	2.639	1.821	0.169	3.907	nan	1.954	2.954	2.592	2.683	2.655	1.321	6.812	6.936	1.844	2.727	2.665	3.973	2.988	2.838	2.465	4.737	0.786	1.004	1.685	1.622	1.648	0.917	1.154	1.314	0.206	0.794	1.491	1.967	0.473	1.379	1.174	0.415
7507	chr7	139167089	139185524	+	0	NA	Intergenic	Intergenic	-7849	NM_198508	346689	Hs.17572	NM_198508	ENSG00000188883	KLRG2	CLEC15B	killer cell lectin like receptor G2	protein-coding	nan	nan	nan	0.328	0.297	0.209	0.717	0.097	0.113	0.261	0.237	0.811	1.894	0.173	0.137	0.292	0.287	0.382	0.614	0.963	1.146	nan	0.387	0.668	0.624	0.187	nan	0.428	0.469	nan	0.447	0.314	0.417	0.477	0.438	0.513	0.901	1.122	nan	1.572	4.448	0.089	0.099	0.717	0.811	0.475	0.078	0.049	0.101
2142	chr12	110703507	110723444	+	0	NA	Intergenic	AluSg|SINE|Alu	-5557	NM_001681	488	Hs.506759	NM_001681	ENSG00000174437	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein-coding	nan	nan	1.616	2.029	2.253	1.172	3.732	2.280	0.783	1.807	1.133	1.944	4.362	1.486	0.163	1.461	1.768	1.879	4.164	nan	nan	nan	2.012	2.553	2.793	2.681	3.465	nan	nan	4.381	4.769	1.368	2.474	4.300	4.286	2.805	4.293	nan	1.866	1.724	2.566	0.903	1.088	3.732	1.944	0.944	1.006	0.755	1.256
1834	chr12	12029353	12040683	+	0	NA	intron (NM_001987, intron 5 of 7)	intron (NM_001987, intron 5 of 7)	-188860	NM_138723	79370	Hs.210343	NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding	0.965	1.653	2.487	5.056	1.182	0.404	0.797	0.150	0.070	1.990	1.029	2.801	3.317	0.073	0.108	0.346	0.625	0.867	3.539	nan	2.029	9.487	2.498	1.144	1.331	0.529	0.901	5.412	4.878	0.406	0.285	0.378	0.709	0.753	1.100	0.480	0.663	1.856	0.815	0.241	0.286	0.222	0.035	0.797	2.801	0.236	0.675	0.168	0.142
545	chr1	153400222	153408213	+	0	NA	Intergenic	MIR|SINE|MIR	8286	NM_001045479	645922	Hs.647713	NM_001045479	ENSG00000197364	S100A7L2	S100a7b	S100 calcium binding protein A7 like 2	protein-coding	nan	nan	0.883	0.154	7.218	4.089	0.192	0.075	0.123	2.748	1.802	1.529	2.834	0.027	0.087	0.234	0.161	0.141	0.181	4.887	nan	6.027	1.749	0.078	0.135	0.198	0.583	0.254	0.564	0.537	0.436	0.336	0.447	3.457	2.511	0.288	0.440	3.163	1.349	0.076	2.843	1.470	0.030	0.192	1.529	0.182	0.345	0.050	0.029
2733	chr14	91275181	91295331	+	0	NA	Intergenic	Intergenic	-2495	NM_001320421	145567	Hs.655697	NM_001010854	ENSG00000165914	TTC7B	TTC7L1|c14_5685	tetratricopeptide repeat domain 7B	protein-coding	2.252	1.217	nan	0.474	0.496	0.301	0.799	0.398	0.207	0.310	0.308	0.787	1.409	0.387	0.111	0.678	1.217	0.875	1.049	2.196	2.090	0.829	0.407	2.141	2.004	1.631	2.293	0.738	1.321	3.614	4.304	0.537	0.773	0.739	0.600	1.954	3.294	nan	0.852	0.660	0.362	0.146	1.345	0.799	0.787	0.570	0.238	0.128	0.831
7310	chr7	68066517	68093220	+	0	NA	Intergenic	Intergenic	594628	NR_120514	102723427	Hs.583491	NR_120514	ENSG00000225209	LOC102723427	-	uncharacterized LOC102723427	ncRNA	nan	nan	nan	0.072	1.596	0.720	0.168	0.091	0.155	0.170	0.197	0.917	0.436	0.024	0.145	0.542	0.490	1.256	0.767	0.775	0.783	3.208	1.173	0.268	0.255	0.074	0.119	0.341	0.329	0.815	0.500	0.131	0.213	0.136	0.133	0.222	0.309	2.641	1.380	0.544	0.157	0.028	0.334	0.168	0.917	0.168	0.008	0.070	0.074
4625	chr2	179340508	179350335	+	0	NA	5' UTR (NM_019091, exon 1 of 8)	5' UTR (NM_019091, exon 1 of 8)	222	NM_019091	65977	Hs.41086	NM_019091	ENSG00000116095	PLEKHA3	FAPP1	pleckstrin homology domain containing A3	protein-coding	3.381	1.843	2.226	2.336	2.239	1.322	1.897	1.030	0.147	1.303	0.661	2.392	6.269	0.938	0.083	2.598	3.130	2.612	3.934	3.744	2.641	3.797	1.307	8.987	9.485	3.305	3.351	7.636	11.905	3.290	4.119	1.531	2.781	1.690	1.609	3.213	3.754	1.764	1.095	1.205	1.107	0.165	1.310	1.897	2.392	0.857	0.816	1.107	1.041
2326	chr13	67404615	67417873	+	0	NA	intron (NR_046527, intron 1 of 5)	L1M5|LINE|L1	11943	NR_046527	100874064	Hs.569284	NR_046527	ENSG00000228842	PCDH9-AS2	-	PCDH9 antisense RNA 2	ncRNA	nan	1.317	nan	0.250	0.198	0.048	0.753	0.074	0.037	0.191	0.216	0.408	1.330	0.029	0.090	0.486	0.544	0.085	0.176	0.576	0.718	0.723	0.178	0.102	0.122	0.371	0.566	1.007	1.088	0.607	0.353	0.143	0.358	3.456	4.786	0.892	1.757	0.195	0.130	0.008	0.173	1.451	0.708	0.753	0.408	0.865	0.415	0.079	0.442
7166	chr7	13755643	13768193	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	264221	NM_001163150	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding	nan	1.055	nan	0.126	0.249	0.178	0.246	0.264	0.166	0.592	0.530	0.388	0.328	0.043	0.112	nan	0.291	0.356	0.352	0.342	0.551	0.755	0.212	0.342	0.425	4.432	4.978	0.426	0.377	1.101	0.613	0.126	0.078	1.511	1.301	0.132	0.240	0.654	0.593	0.040	0.128	0.290	0.451	0.246	0.388	0.117	0.108	0.039	0.051
6419	chr5	121105712	121121377	+	0	NA	Intergenic	Intergenic	-74106	NM_177478	94033	Hs.105324	NM_177478	ENSG00000181867	FTMT	MTF	ferritin mitochondrial	protein-coding	nan	0.706	0.577	0.079	0.129	0.082	0.016	0.057	0.149	0.069	0.095	0.046	0.148	0.021	0.119	0.217	0.154	9.449	nan	0.143	0.187	0.106	0.073	0.175	0.170	0.140	0.247	0.147	0.176	0.387	0.100	0.061	0.161	0.307	0.566	0.258	0.442	0.156	0.267	0.014	0.028	0.061	0.041	0.016	0.046	0.013	0.020	0.013	0.031
3089	chr16	22200098	22228764	+	0	NA	Intergenic	L1MB7|LINE|L1	-3161	NM_013302	29904	Hs.498892	NM_013302	ENSG00000103319	EEF2K	HSU93850|eEF-2K	eukaryotic elongation factor 2 kinase	protein-coding	1.657	1.188	nan	1.204	0.974	0.512	0.466	0.591	0.174	0.480	0.229	0.638	2.428	0.498	0.101	1.644	2.156	0.783	0.895	1.083	0.871	nan	1.398	2.558	2.541	0.979	1.502	2.168	3.496	1.821	1.825	1.211	1.657	0.927	1.373	1.536	4.893	1.035	0.584	0.335	0.678	0.160	0.308	0.466	0.638	0.346	0.414	1.390	1.950
7108	chr6	170054155	170071115	+	0	NA	intron (NM_182552, intron 8 of 25)	CpG	39524	NM_182552	253769	Hs.131903	NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding	nan	nan	nan	2.253	1.191	0.611	0.279	0.139	0.047	0.232	0.122	2.384	0.903	0.275	0.112	0.712	1.356	0.393	0.466	nan	4.577	nan	1.096	0.329	0.305	0.183	0.317	nan	2.465	nan	0.279	0.656	0.743	0.271	0.343	0.260	0.412	0.764	0.509	1.360	1.739	0.062	1.364	0.279	2.384	0.108	0.048	0.205	0.065
2436	chr13	109792916	109816528	+	0	NA	intron (NM_001198950, intron 32 of 34)	intron (NM_001198950, intron 32 of 34)	14929	NR_047700	100885782	Hs.655942	NR_047700	ENSG00000236242	MYO16-AS1	-	MYO16 antisense RNA 1	ncRNA	0.654	nan	0.660	0.101	0.270	0.115	0.168	0.124	0.076	0.085	0.084	0.147	0.371	7.680	0.177	1.149	0.730	1.174	2.287	0.363	0.460	0.197	0.101	0.106	0.136	0.070	0.107	0.327	0.374	0.453	0.231	0.309	0.431	0.068	0.119	0.367	0.587	0.349	0.212	0.033	0.184	0.020	0.124	0.168	0.147	0.012	1.518	0.068	0.263
8424	chrX	153616842	153628906	+	0	NA	Intergenic	Intergenic	-3532	NM_001256580	6134	Hs.534404	NM_006013	ENSG00000147403	RPL10	AUTSX5|DXS648|DXS648E|L10|NOV|QM	ribosomal protein L10	protein-coding	3.215	2.447	4.007	2.510	4.707	2.368	3.476	0.996	0.187	0.846	0.419	2.387	6.426	1.693	0.092	4.576	5.291	2.830	4.347	5.843	4.858	4.725	2.551	8.301	8.348	1.776	2.770	4.878	6.843	5.099	6.135	4.361	5.957	3.515	2.831	4.939	4.413	1.798	1.084	2.047	3.997	0.567	1.739	3.476	2.387	0.718	1.328	2.075	1.452
6766	chr6	42407714	42428494	+	0	NA	intron (NM_033502, intron 2 of 17)	intron (NM_033502, intron 2 of 17)	1685	NM_001297573	55809	Hs.485392	NM_018415	ENSG00000124496	TRERF1	BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5	transcriptional regulating factor 1	protein-coding	2.440	1.480	1.541	1.318	1.461	0.719	1.652	0.842	0.209	0.579	0.414	2.799	2.270	1.286	0.123	2.698	3.477	0.858	0.978	2.563	2.359	4.107	1.277	1.550	1.740	1.162	1.607	2.780	nan	2.145	2.429	0.936	2.619	2.021	1.442	1.299	2.032	1.164	0.763	1.091	1.781	0.790	0.763	1.652	2.799	0.398	0.618	1.634	0.969
6390	chr5	102125317	102152502	+	0	NA	intron (NM_001319943, intron 1 of 26)	(GGAA)n|Simple_repeat|Simple_repeat	48422	NM_001319943	5066	Hs.369430	NM_000919	ENSG00000145730	PAM	PAL|PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding	1.304	3.246	0.890	3.389	3.496	1.869	0.873	0.810	0.184	1.999	1.152	1.062	4.022	0.077	0.140	0.919	0.973	0.434	0.753	0.608	0.814	5.646	3.913	0.186	0.179	1.903	2.464	3.000	4.004	0.631	0.402	0.507	1.200	6.836	7.776	0.352	0.601	2.722	1.203	0.791	0.687	1.621	0.190	0.873	1.062	0.214	2.356	0.604	0.164
4019	chr19	32960134	32977534	+	0	NA	intron (NM_207325, intron 17 of 18)	THE1B|LTR|ERVL-MaLR	71812	NM_207325	147991	Hs.194392	NM_207325	ENSG00000178904	DPY19L3	-	dpy-19 like 3 (C. elegans)	protein-coding	0.876	0.667	0.790	0.281	0.196	0.138	0.490	0.141	0.068	0.090	0.084	0.076	2.446	0.092	0.129	0.293	0.329	0.281	0.477	1.781	2.259	0.378	0.136	0.419	0.377	0.490	0.758	1.109	1.894	nan	0.267	0.337	0.483	0.163	0.199	0.243	0.453	0.708	0.556	4.450	2.046	0.038	0.068	0.490	0.076	0.050	0.047	0.058	0.114
6245	chr5	43035873	43046254	+	0	NA	promoter-TSS (NM_001014279)	promoter-TSS (NM_001014279)	-616	NM_001014279	389289	Hs.529385	NM_001014279	ENSG00000177721	ANXA2R	AX2R|AXIIR|C5orf39	annexin A2 receptor	protein-coding	3.258	7.669	5.261	5.016	1.666	0.756	1.445	4.684	0.511	1.055	1.067	2.745	14.508	2.863	0.145	0.485	0.434	4.677	7.610	4.598	3.448	0.786	0.217	1.214	1.265	2.925	3.756	0.549	0.641	0.917	0.579	1.709	2.976	0.202	0.152	0.071	0.167	0.497	0.411	4.594	9.933	0.028	1.150	1.445	2.745	0.584	2.684	1.162	0.049
5416	chr3	79185671	79239886	+	0	NA	intron (NM_002941, intron 2 of 30)	L1MB3|LINE|L1	-144169	NM_133631	6091	Hs.744218	NM_002941	ENSG00000169855	ROBO1	DUTT1|SAX3	roundabout guidance receptor 1	protein-coding	0.622	0.582	0.791	0.094	0.200	0.080	0.080	0.097	0.042	0.055	0.083	0.254	0.396	0.044	0.083	0.177	0.098	0.171	nan	0.672	0.783	0.092	0.047	0.124	0.114	5.013	5.172	0.345	0.371	0.621	0.366	0.057	0.107	0.165	0.150	0.349	nan	0.249	0.334	0.010	0.210	0.076	0.073	0.080	0.254	0.011	0.034	0.022	0.170
7354	chr7	81733665	81746578	+	0	NA	intron (NM_000722, intron 6 of 38)	L2a|LINE|L2	101628	NR_110077	101927356	Hs.571348	NR_110076	ENSG00000223770	LOC101927356	-	uncharacterized LOC101927356	ncRNA	1.130	0.800	0.926	0.258	2.645	1.645	1.109	0.226	0.075	0.377	0.405	0.268	0.415	0.080	0.207	0.532	0.422	0.260	0.252	0.350	0.595	2.157	1.130	0.186	0.181	0.971	1.286	0.424	0.444	0.606	0.343	0.153	0.334	3.258	4.893	1.663	nan	0.544	0.382	1.261	0.326	0.672	0.141	1.109	0.268		0.032	0.047	0.600
2882	chr15	56656523	56665619	+	0	NA	intron (NM_001286449, intron 2 of 12)	L1MEe|LINE|L1	3449	NM_198524	374618	Hs.511476	NM_198524	ENSG00000151575	TEX9	-	testis expressed 9	protein-coding	1.899	1.387	1.435	0.733	1.156	0.512	0.957	0.544	0.053	1.056	1.103	0.793	3.370	0.582	0.097	0.575	0.779	1.321	2.147	1.312	1.617	4.231	1.418	0.608	0.718	3.037	3.747	1.536	1.775	3.963	3.437	0.759	1.176	12.458	9.992	0.646	0.788	1.218	0.535	0.374	0.313	3.106	0.356	0.957	0.793	0.397	0.711	0.333	0.198
1662	chr11	115366880	115377191	+	0	NA	intron (NM_001098517, intron 1 of 8)	intron (NM_001098517, intron 1 of 8)	3206	NM_014333	23705	Hs.370510	NM_014333	ENSG00000182985	CADM1	BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1	cell adhesion molecule 1	protein-coding	1.640	1.522	2.279	3.935	5.302	2.457	1.141	0.044	0.070	2.792	2.070	4.295	11.229	0.043	0.101	5.504	nan	4.381	5.079	17.948	14.499	6.926	2.381	0.089	0.085	3.045	nan	5.104	7.336	1.469	1.816	6.465	13.908	3.619	3.577	1.899	2.816	2.577	1.561	3.116	3.119	1.223	2.254	1.141	4.295	0.979	1.695	6.621	0.753
574	chr1	155241804	155249659	+	0	NA	Intergenic	Intergenic	-1487	NR_073074	57657	Hs.706960	NM_020897	ENSG00000143630	HCN3	-	hyperpolarization activated cyclic nucleotide gated potassium channel 3	protein-coding	nan	nan	2.378	2.508	2.310	1.472	4.778	1.467	0.309	1.581	1.015	3.306	13.757	1.914	0.180	2.194	3.227	3.467	4.368	5.669	nan	4.311	1.238	1.937	1.734	2.737	3.585	4.225	5.287	3.118	2.606	3.230	6.202	1.946	1.971	3.118	5.731	2.116	1.037	2.656	5.558	0.618	1.656	4.778	3.306	0.990	3.711	2.740	1.650
7874	chr8	109983660	109991947	+	0	NA	Intergenic	Intergenic	-111850	NM_003301	7201	Hs.3022	NM_003301	ENSG00000174417	TRHR	TRH-R	thyrotropin releasing hormone receptor	protein-coding	0.996	nan	nan	0.124	0.266	0.232	0.266	0.097	0.078	0.057	0.059	0.030	0.821	0.052	0.089	0.248	0.253	0.160	0.334	0.411	0.430	10.281	3.275	0.665	0.549	0.410	nan	0.608	nan	nan	0.358	0.089	0.206	0.326	0.328	0.595	nan	0.391	0.464	0.054	0.164	0.046		0.266	0.030	0.012	0.012	0.024	0.119
3397	chr17	38689235	38717332	+	0	NA	Intergenic	Intergenic	13363	NM_001301718	1236	Hs.370036	NM_001838	ENSG00000126353	CCR7	BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1	C-C motif chemokine receptor 7	protein-coding	nan	2.051	0.913	0.634	2.630	1.369	0.398	0.179	0.092	0.634	0.355	2.716	4.261	0.073	0.075	0.446	0.464	0.338	0.524	nan	4.135	3.214	1.083	0.754	0.801	1.197	1.580	3.893	3.823	nan	0.352	0.410	0.568	1.145	1.243	0.438	0.727	1.190	0.896	5.662	4.310	0.275	0.574	0.398	2.716	0.608	3.409	0.237	0.107
660	chr1	171453574	171456117	+	0	NA	5' UTR (NM_015172, exon 1 of 34)	5' UTR (NM_015172, exon 1 of 34)	179	NM_015172	23215	Hs.494614	NM_015172	ENSG00000117523	PRRC2C	BAT2-iso|BAT2D1|BAT2L2|XTP2	proline rich coiled-coil 2C	protein-coding	8.887	6.445	6.258	6.083	6.933	3.687	5.984	9.507	0.445	6.074	1.650	4.372	13.802	4.874	0.174	7.510	8.430	17.207	24.199	nan	12.208	10.751	6.012	12.250	12.585	8.274	8.168	8.667	15.225	12.004	12.587	8.597	16.179	8.126	8.967	13.376	12.002	4.668	2.249	2.868	7.945	1.565	2.461	5.984	4.372	1.675	2.569	4.623	3.038
6985	chr6	135553615	135582319	+	0	NA	Intergenic	MER41A|LTR|ERV1	7669	NR_030317	693126		NR_030317	ENSG00000207689	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA	0.910	0.911	1.136	0.447	0.671	0.385	0.179	0.067	0.061	0.148	0.067	0.330	0.490	0.042	0.124	2.190	1.992	2.773	2.822	0.459	0.560	nan	0.821	2.155	2.270	0.232	0.342	0.556	0.608	0.602	0.442	15.503	19.841	0.196	0.274	0.414	nan	0.497	0.415	0.092	0.099	0.030	0.066	0.179	0.330	0.077	0.089	13.429	0.168
977	chr1	246371336	246385418	+	0	NA	intron (NM_001167740, intron 5 of 11)	intron (NM_001167740, intron 5 of 11)	202337	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding	nan	1.357	nan	8.039	0.783	0.274	0.344	0.186	0.159	2.423	1.632	3.310	14.815	0.085	0.139	0.986	1.266	0.316	0.637	5.679	5.745	10.599	3.101	0.448	0.460	0.513	0.735	3.736	4.409	0.472	0.259	0.506	0.768	1.789	1.647	0.447	0.709	1.799	1.075	4.265	0.069	0.256	0.085	0.344	3.310	0.062	3.277	0.317	0.134
6813	chr6	53042800	53061509	+	0	NA	Intergenic	Intergenic	-38530	NM_003643	8521	Hs.23589	NM_003643	ENSG00000137270	GCM1	GCMA|hGCMa	glial cells missing homolog 1	protein-coding	0.932	1.438	nan	1.432	0.916	0.419	0.513	0.164	0.188	0.261	0.214	1.170	1.938	0.088	0.143	0.427	0.469	0.355	0.491	0.739	0.834	2.930	0.751	0.402	0.355	0.350	0.569	6.401	4.618	0.432	0.162	0.234	0.412	0.791	0.894	0.235	0.341	1.513	0.820	0.238	0.148	0.086	0.096	0.513	1.170	0.021	0.508	0.095	0.047
566	chr1	155033725	155067762	+	0	NA	promoter-TSS (NM_004952)	promoter-TSS (NM_004952)	-605	NM_004952	1944	Hs.516656	NM_004952	ENSG00000143590	EFNA3	EFL2|EPLG3|Ehk1-L|LERK3	ephrin A3	protein-coding	nan	nan	2.627	0.752	1.176	0.735	1.741	0.186	0.109	0.436	0.294	0.937	5.809	0.961	0.100	3.381	5.046	2.024	2.762	3.364	nan	1.352	0.462	0.809	0.835	1.078	1.503	1.992	2.938	1.313	1.110	3.048	4.494	1.214	0.913	1.032	2.132	1.498	0.750	0.674	2.495	0.214	1.643	1.741	0.937	1.215	0.913	3.365	0.255
4067	chr19	41103693	41121639	+	0	NA	intron (NM_001042545, intron 6 of 30)	AluSz|SINE|Alu	5389	NM_001042545	8425	Hs.466766	NM_003573	ENSG00000090006	LTBP4	ARCL1C|LTBP-4|LTBP4L|LTBP4S	latent transforming growth factor beta binding protein 4	protein-coding	1.194	0.986	0.949	0.624	1.474	0.834	1.064	0.501	0.159	0.395	0.229	0.554	9.453	1.957	0.100	0.274	0.367	0.677	0.994	1.015	0.883	1.064	0.252	0.537	0.563	1.135	1.603	2.591	3.543	1.182	0.998	0.623	0.690	0.283	0.276	1.076	2.054	1.269	0.716	0.637	1.478	0.021	0.259	1.064	0.554	0.953	1.696	0.432	0.605
7349	chr7	81186151	81200580	+	0	NA	Intergenic	L1ME3F|LINE|L1	-2230	NR_136264	105369146	Hs.730390	NR_136264		LOC105369146	-	uncharacterized LOC105369146	ncRNA	0.853	0.623	0.628	0.104	0.207	0.066	0.089	0.278	0.049	0.109	0.064	0.083	0.172	0.937	0.171	0.301	0.253	0.173	0.227	0.289	0.398	0.160	0.085	0.102	0.178	3.371	3.038	0.240	0.223	0.485	0.162	0.155	0.316	0.073	0.119	0.262	nan	0.531	0.496	0.015	0.154	0.020	0.077	0.089	0.083	0.007	0.028	0.089	0.078
2765	chr14	100787750	100817450	+	0	NA	intron (NM_173701, intron 10 of 10)	AluY|SINE|Alu	12921	NM_207117	283600	Hs.108268	NM_207117	ENSG00000140107	SLC25A47	C14orf68|HDMCP|HMFN1655	solute carrier family 25 member 47	protein-coding	1.776	1.164	0.917	1.608	0.550	0.285	0.807	0.259	0.162	0.567	0.426	0.312	0.657	0.091	0.084	0.411	0.527	0.289	0.691	1.922	1.834	2.665	0.708	0.200	0.235	0.335	0.627	2.952	3.209	1.250	1.046	0.318	0.337	1.321	0.870	0.599	1.329	2.793	1.425	0.599	2.850	0.259	0.271	0.807	0.312	0.545	0.967	0.036	0.505
5687	chr3	175860660	175869429	+	0	NA	Intergenic	Intergenic	-367847	NR_107017	102465858		NR_107017	ENSG00000283333	MIR7977	hsa-mir-7977	microRNA 7977	ncRNA	1.171	1.821	1.117	4.819	4.249	2.223	0.175	0.180	0.166	1.741	0.816	2.759	0.677	0.024	0.099	0.440	0.257	2.086	1.415	4.469	5.021	11.374	6.234	0.309	0.334	0.623	0.637	5.028	3.671	0.594	0.234	0.397	0.599	1.373	2.442	0.351	0.544	1.192	0.390	0.502	0.266	0.337	0.136	0.175	2.759	0.088	1.463	0.162	0.070
2299	chr13	50150773	50174324	+	0	NA	Intergenic	Intergenic	-2829	NM_018191	55213	Hs.508021	NM_018191	ENSG00000136144	RCBTB1	CLLD7|CLLL7|GLP|RDEOA	RCC1 and BTB domain containing protein 1	protein-coding	1.336	nan	nan	0.627	0.354	0.143	0.349	0.413	0.144	0.245	0.163	0.686	0.562	0.341	0.076	2.166	1.835	0.750	0.725	1.434	1.399	nan	0.596	0.818	0.778	0.483	0.700	1.077	1.438	0.850	0.639	1.869	2.986	0.336	0.289	2.074	nan	0.389	0.280	0.281	0.516	0.044	0.170	0.349	0.686	0.166	0.156	1.564	0.905
108	chr1	17063722	17086162	+	0	NA	Intergenic	Intergenic	11610	NR_135824	102724562	Hs.349110	NR_135824		LOC102724562	-	macrophage stimulating 1 pseudogene	pseudo	4.292	3.211	nan	3.286	1.872	1.158	2.680	0.419	0.180	0.965	0.662	1.036	3.925	1.536	0.303	4.205	4.612	1.946	2.900	5.040	5.461	4.616	2.717	5.027	nan	3.054	nan	5.246	6.830	nan	4.109	3.087	3.751	1.177	1.216	3.878	7.034	4.531	2.972	6.175	1.795	0.364	0.740	2.680	1.036	1.779	1.200	1.081	2.585
2820	chr15	26632566	26642803	+	0	NA	Intergenic	Intergenic	236641	NM_001191321	2562	Hs.302352	NM_000814	ENSG00000166206	GABRB3	ECA5|EIEE43	gamma-aminobutyric acid type A receptor beta3 subunit	protein-coding	nan	1.024	nan	0.019	0.214	0.064	0.232	0.065	0.115	0.451	0.567	0.268	0.171	0.032	0.064	0.201	0.101	0.185	0.336	1.840	1.916	0.054	0.035	0.191	0.154	1.111	1.761	0.842	0.879	8.581	7.364	0.131	0.128	3.382	2.114	0.187	0.213	1.383	0.955	0.413	0.043	1.460	0.055	0.232	0.268	0.653	0.020	0.050	0.278
604	chr1	159194870	159203901	+	0	NA	Intergenic	Intergenic	24336	NM_001122951	2532	Hs.153381	NM_002036	ENSG00000213088	ACKR1	CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	nan	nan	1.975	0.069	0.259	0.125	0.084	0.098	0.073	0.053	0.297	0.071	0.278	0.085	0.127	1.256	0.998	13.499	9.451	0.242	nan	0.118	0.073	0.112	0.117	0.224	0.414	0.339	0.331	0.397	0.300	3.290	5.372	0.066	0.113	0.187	0.512	0.432	0.456	0.771	0.135	0.011	0.053	0.084	0.071	0.011	0.022	3.394	0.149
6475	chr5	140696635	140706158	+	0	NA	Intergenic	Intergenic	-1045	NM_005642	6879	Hs.438838	NM_005642	ENSG00000178913	TAF7	TAF2F|TAFII55	TATA-box binding protein associated factor 7	protein-coding	nan	1.692	0.996	0.517	1.968	1.111	0.607	0.444	0.169	0.539	0.299	1.245	4.201	1.189	0.136	1.060	1.081	1.912	2.642	1.737	1.437	2.736	1.564	11.805	12.195	0.781	1.075	1.450	2.282	2.526	2.090	1.265	1.999	2.050	2.513	1.057	1.145	0.864	0.580	0.779	0.707	0.190	0.523	0.607	1.245	0.192	0.699	0.344	0.118
4880	chr20	20661590	20677196	+	0	NA	intron (NM_020343, intron 1 of 39)	intron (NM_020343, intron 1 of 39)	23873	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic alpha subunit 2	protein-coding	1.268	1.262	nan	0.268	0.380	0.133	0.123	0.169	0.073	0.226	0.155	0.393	0.376	0.043	0.110	0.723	0.891	0.303	0.362	0.452	0.518	0.731	0.295	0.256	0.354	2.959	3.653	1.462	1.471	0.775	0.517	0.329	0.470	0.200	0.195	0.335	0.717	0.779	0.716	0.088	0.092	0.035	0.177	0.123	0.393	0.185	0.090	0.103	0.184
2623	chr14	59101011	59150122	+	0	NA	Intergenic	Intergenic	20011	NR_046095	51339	Hs.48950	NM_016651	ENSG00000165617	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3	dishevelled binding antagonist of beta catenin 1	protein-coding	nan	nan	1.721	0.784	0.458	0.196	0.845	0.538	0.210	0.134	0.164	0.271	0.414	0.091	0.113	0.337	0.329	0.596	1.017	0.965	0.916	1.422	0.492	nan	0.391	0.538	0.813	1.659	nan	1.333	1.177	0.223	0.394	4.325	3.737	1.366	4.282	1.183	0.600	0.880	0.324	1.720	1.709	0.845	0.271	0.164	0.269	0.058	1.964
330	chr1	60138977	60159486	+	0	NA	intron (NM_001278224, intron 8 of 9)	intron (NM_001278224, intron 8 of 9)	49737	NR_039861	100616409		NR_039861	ENSG00000266150	MIR4711	-	microRNA 4711	ncRNA	1.629	1.161	nan	0.443	0.357	0.156	0.724	0.946	0.126	0.175	0.160	1.665	1.344	0.084	0.131	0.385	0.395	0.594	0.862	2.459	2.847	0.869	0.319	0.483	0.454	nan	nan	4.999	nan	1.689	1.325	0.164	0.255	0.463	0.425	1.145	3.900	1.210	0.844	1.080	0.728	0.083	0.820	0.724	1.665	0.384	0.366	0.049	2.143
7879	chr8	110590811	110624275	+	0	NA	intron (NM_001099748, intron 4 of 7)	intron (NM_001099748, intron 4 of 7)	12748	NM_001330596	55638	Hs.390738	NM_017786	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin	protein-coding	nan	nan	3.639	0.373	1.394	0.753	1.203	0.224	0.127	0.159	0.122	0.850	0.634	0.043	0.066	0.281	0.208	0.208	0.399	1.019	1.153	nan	1.111	0.673	nan	1.514	nan	1.189	1.245	0.782	0.482	0.183	0.293	2.567	3.982	0.582	1.529	0.721	0.599	0.174	1.017	0.964	0.189	1.203	0.850	0.098	0.960	0.039	0.262
5734	chr3	182278488	182288395	+	0	NA	Intergenic	Intergenic	-58529	NR_134941	105374244	Hs.130176	NR_134941	ENSG00000244247	LINC01995	-	long intergenic non-protein coding RNA 1995	ncRNA	1.214	1.202	0.823	0.337	0.417	0.227	0.303	0.137	0.032	0.165	0.226	0.132	0.759	0.087	0.100	0.269	0.142	0.166	0.244	0.367	0.561	1.204	0.378	0.110	0.133	0.561	0.953	0.498	0.451	0.769	0.313	0.174	0.194	1.008	0.661	0.281	0.625	0.886	0.678	0.145	0.134	0.234	5.876	0.303	0.132	0.108	0.081	0.040	0.176
1857	chr12	18411825	18422039	+	0	NA	intron (NM_004570, intron 1 of 31)	L1MEe|LINE|L1	2458	NM_004570	5288	Hs.22500	NM_004570	ENSG00000139144	PIK3C2G	PI3K-C2-gamma|PI3K-C2GAMMA	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	0.755	3.119	1.710	0.735	0.459	0.219	0.229	0.087	0.033	0.169	0.138	0.585	0.882	0.053	0.143	0.295	0.257	6.027	6.780	nan	1.048	5.666	2.156	0.517	0.366	0.396	0.713	1.074	1.049	0.327	0.135	0.249	0.261	0.034	0.050	0.479	1.031	0.292	0.297	0.218	0.069	0.009	0.225	0.229	0.585	0.009	0.221	0.029	0.147
360	chr1	68212490	68226797	+	0	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	68783	NM_001924	1647	Hs.80409	NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding	1.644	1.217	nan	0.141	0.621	0.304	2.630	2.860	0.302	0.404	0.188	0.526	1.928	0.574	0.100	0.442	0.422	3.975	6.990	0.895	0.932	1.746	0.573	0.589	0.524	nan	nan	1.028	nan	0.464	0.247	0.373	0.604	1.337	1.422	0.459	1.069	1.290	0.756	0.959	2.281	0.414	0.729	2.630	0.526	0.549	0.276	0.305	0.235
7475	chr7	129463340	129494390	+	0	NA	intron (NM_182697, intron 4 of 4)	intron (NM_182697, intron 4 of 4)	-64011	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA	1.293	0.850	1.561	0.990	0.733	0.476	0.503	1.995	0.351	0.571	0.343	1.254	1.305	0.832	0.200	0.850	1.005	1.003	1.908	1.553	1.210	4.343	1.448	1.038	1.177	0.553	0.744	1.674	1.924	0.721	0.624	0.573	0.908	0.780	1.193	0.714	1.443	2.463	1.375	1.465	0.481	0.144	0.459	0.503	1.254	0.248	0.617	0.288	0.318
3160	chr16	68809169	68821586	+	0	NA	intron (NM_004360, intron 2 of 15)	AluJb|SINE|Alu	38958	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA	nan	nan	1.338	1.820	2.157	1.000	0.196	0.251	0.181	0.519	0.365	0.959	2.522	0.071	0.089	0.990	1.421	0.361	0.664	1.907	1.724	2.367	0.583	1.158	1.244	0.091	nan	2.548	3.813	0.343	0.177	0.934	1.416	0.500	0.322	0.164	0.362	3.277	1.298	1.543	0.693	0.053	0.154	0.196	0.959	0.218	0.185	1.528	0.039
2321	chr13	60853426	60868461	+	0	NA	Intergenic	LTR9B|LTR|ERV1	-18705	NR_047022	100874169	Hs.171027	NR_047022		LINC00434	-	long intergenic non-protein coding RNA 434	ncRNA	nan	2.336	nan	2.101	2.107	1.183	0.841	0.096	0.096	0.387	0.235	2.531	5.358	0.022	0.087	1.576	1.172	0.471	0.270	10.547	10.125	9.612	2.819	0.251	0.238	0.057	0.110	2.398	2.410	0.333	0.225	0.333	0.565	4.955	4.779	0.306	0.513	1.294	0.554	0.479	4.408	1.676	0.352	0.841	2.531	0.013	0.068	0.204	0.083
5798	chr3	195161814	195179526	+	0	NA	Intergenic	AluSq2|SINE|Alu	-6853	NM_012287	23527	Hs.593373	NM_012287	ENSG00000114331	ACAP2	CENTB2|CNT-B2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	nan	1.968	1.394	2.110	3.486	1.691	1.005	1.121	0.292	0.950	0.647	1.937	nan	0.430	0.083	0.821	1.084	1.083	1.361	3.857	4.274	5.928	2.163	2.042	2.040	1.132	1.492	2.925	3.447	3.532	3.354	0.941	1.862	1.852	1.801	1.418	5.076	2.290	1.395	6.330	2.268	0.569	2.037	1.005	1.937	0.488	0.298	0.569	1.391
3082	chr16	20619978	20627729	+	0	NA	Intergenic	Intergenic	-36158	NM_182617	348158	Hs.298252	NM_182617	ENSG00000066813	ACSM2B	ACSM2|HXMA|HYST1046	acyl-CoA synthetase medium-chain family member 2B	protein-coding	1.023	1.525	nan	4.012	0.260	0.124	0.082	0.029		0.069	0.064	0.110	3.673	0.041	0.048	0.361	0.132	0.131	0.155	3.129	3.629	nan	0.141	0.180	0.184	0.314	0.470	11.661	10.318	3.613	2.390	0.245	0.250	0.082	0.045	0.615	2.777	2.098	0.773	9.585	0.689	0.067	0.093	0.082	0.110	0.063	1.691		0.241
7517	chr7	141107409	141139601	+	0	NA	intron (NM_001195278, intron 2 of 3)	intron (NM_001195278, intron 2 of 3)	-127573	NM_018238	55750	Hs.743318	NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding	0.880	0.579	0.759	1.399	0.404	0.239	0.353	0.129	0.065	1.142	0.286	1.041	8.297	0.097	0.148	0.451	0.421	0.127	0.190	1.127	1.139	2.542	0.615	0.446	0.435	0.531	0.834	0.665	0.894	0.351	0.214	0.291	0.351	0.494	0.492	0.145	0.255	1.751	nan	3.202	2.901	0.130	0.091	0.353	1.041	0.142	0.254	0.052	0.044
4595	chr2	172855637	172865102	+	0	NA	Intergenic	Intergenic	-4435	NR_136276	254042	Hs.298250	NM_199227	ENSG00000172878	METAP1D	MAP 1D|MAP1D|MetAP 1D|Metap1l	methionyl aminopeptidase type 1D, mitochondrial	protein-coding	1.337	0.976	1.510	2.281	5.516	2.739	0.877	0.328	0.116	0.734	0.402	1.282	1.959	0.683	0.084	1.501	1.287	0.848	1.403	1.961	1.734	4.922	1.474	1.558	1.735	1.093	1.624	2.198	3.010	1.491	1.493	0.842	1.185	1.514	1.226	1.667	1.514	2.559	1.171	0.210	0.450	0.158	0.160	0.877	1.282	0.248	0.188	0.179	0.329
7872	chr8	109257346	109262358	+	0	NA	intron (NM_001568, intron 1 of 12)	intron (NM_001568, intron 1 of 12)	1107	NM_001568	3646	Hs.405590	NM_001568	ENSG00000104408	EIF3E	EIF3-P48|EIF3S6|INT6|eIF3-p46	eukaryotic translation initiation factor 3 subunit E	protein-coding	4.138	nan	nan	4.448	3.272	1.662	1.717	1.616	0.097	0.628	0.544	2.924	5.878	1.946	0.082	3.427	3.116	3.334	5.002	2.804	3.085	nan	3.864	18.347	20.061	4.119	nan	7.926	nan	nan	4.926	2.364	4.597	3.001	3.506	7.570	5.943	3.096	1.582	0.219	1.045	0.381	0.429	1.717	2.924	0.269	1.749	0.926	1.901
3506	chr17	64167480	64189554	+	0	NA	intron (NM_001199165, intron 2 of 26)	MER44A|DNA|TcMar-Tigger	9470	NM_001302891	201134	Hs.408676	NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO	centrosomal protein 112	protein-coding	1.116	nan	0.807	0.729	0.930	0.421	0.361	0.340	0.190	0.454	0.313	3.749	1.317	0.890	0.154	0.587	0.528	0.286	0.336	2.084	2.655	1.022	0.442	0.390	0.384	0.363	nan	1.704	2.235	0.860	0.623	0.198	0.355	0.429	0.485	0.321	0.341	0.855	0.647	0.221	1.620	0.076	0.170	0.361	3.749	0.075	0.290	0.085	0.118
4587	chr2	169312064	169335419	+	0	NA	intron (NM_203463, intron 1 of 9)	intron (NM_203463, intron 1 of 9)	10982	NM_001256126	253782	Hs.506829	NM_203463	ENSG00000172292	CERS6	CERS5|LASS6	ceramide synthase 6	protein-coding	1.600	1.275	nan	0.904	0.836	0.600	0.913	0.565	0.158	0.431	0.342	1.029	2.695	0.435	0.084	1.419	1.784	1.733	2.437	1.234	0.949	1.062	0.435	2.464	2.327	1.350	1.755	0.825	1.098	1.369	1.501	1.295	2.961	0.729	0.534	1.624	3.921	0.554	0.490	0.541	0.565	0.144	0.510	0.913	1.029	0.302	0.256	0.878	0.449
682	chr1	178544282	178551815	+	0	NA	Intergenic	Intergenic	36117	NR_033186	400798	Hs.668085	NM_207467	ENSG00000213057	C1orf220	-	chromosome 1 open reading frame 220	ncRNA	nan	nan	nan	0.233	0.292	0.128	0.741	0.308	0.085	0.248	0.282	0.111	0.567	0.077	0.126	1.505	0.900	5.956	2.109	nan	0.712	1.826	0.663	1.682	1.867	0.246	0.573	0.598	0.599	0.677	0.516	1.263	1.854	0.114	0.081	0.564	nan	0.852	0.575	0.080	0.221	0.026	1.059	0.741	0.111	0.116	0.040	0.379	0.578
2971	chr15	82335377	82340787	+	0	NA	5' UTR (NM_032246, exon 1 of 2)	5' UTR (NM_032246, exon 1 of 2)	402	NM_032246	84206	Hs.104744	NM_032246	ENSG00000183496	MEX3B	MEX-3B|RKHD3|RNF195	mex-3 RNA binding family member B	protein-coding	5.104	nan	8.854	4.884	6.846	4.023	4.525	3.088	0.298	2.901	1.498	9.021	15.085	3.584	0.103	5.741	6.250	4.215	5.545	10.115	7.812	5.651	1.878	5.501	5.684	3.352	4.387	7.813	13.324	8.375	11.084	2.498	5.923	2.735	1.551	4.832	3.765	1.793	1.167	3.365	4.725	0.548	3.225	4.525	9.021	1.258	2.194	2.368	1.330
353	chr1	66997516	67024045	+	0	NA	intron (NM_032291, intron 1 of 24)	intron (NM_032291, intron 1 of 24)	11141	NM_032291	84251	Hs.132121	NM_032291	ENSG00000118473	SGIP1	-	SH3 domain GRB2 like endophilin interacting protein 1	protein-coding	1.222	0.971	nan	1.189	1.331	0.726	0.337	1.330	0.178	0.998	0.628	1.635	8.391	0.054	0.088	0.465	0.475	1.804	3.916	0.803	0.831	0.157	0.102	0.238	0.213	nan	nan	1.056	nan	0.393	0.225	0.871	1.876	1.327	1.380	0.817	1.984	1.957	1.181	0.790	3.059	0.148	0.123	0.337	1.635	0.124	1.218	0.998	0.491
3633	chr18	809628	813496	+	0	NA	intron (NM_005433, intron 1 of 11)	intron (NM_005433, intron 1 of 11)	765	NM_005433	7525	Hs.194148	NM_005433	ENSG00000176105	YES1	HsT441|P61-YES|Yes|c-yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	4.486	2.562	4.029	5.886	2.261	1.711	1.391	2.146	0.165	1.587	0.965	12.721	nan	4.396	0.188	2.765	3.120	6.271	7.793	8.853	6.976	10.105	3.672	11.729	12.453	2.221	nan	7.957	11.900	nan	3.248	1.602	3.500	0.967	1.138	4.499	nan	4.608	2.629	1.311	1.604	0.073	1.692	1.391	12.721	0.673	2.705	0.810	1.181
375	chr1	78146574	78151233	+	0	NA	promoter-TSS (NM_015534)	promoter-TSS (NM_015534)	209	NM_001308237	26009	Hs.480506	NM_015534	ENSG00000036549	ZZZ3	ATAC1	zinc finger ZZ-type containing 3	protein-coding	nan	3.099	6.770	5.156	5.951	2.868	4.236	3.725	0.277	2.863	0.981	5.028	9.890	5.550	0.173	5.704	6.510	8.378	12.001	11.777	12.054	9.857	4.809	15.108	16.285	7.213	8.856	11.869	16.704	9.465	10.056	6.778	10.920	4.528	4.983	11.431	10.686	4.972	2.613	5.193	3.730	0.794	3.249	4.236	5.028	1.788	2.286	2.484	3.210
5774	chr3	191068265	191097041	+	0	NA	intron (NM_178335, intron 4 of 11)	CT-rich|Low_complexity|Low_complexity	-34328	NM_198152	257313	Hs.518492	NM_198152	ENSG00000188958	UTS2B	U2B|URP|UTS2D	urotensin 2B	protein-coding	nan	1.039	1.181	0.229	0.499	0.217	0.289	1.058	0.157	0.163	0.226	0.085	nan	0.136	0.072	0.325	0.310	2.165	3.972	0.395	0.409	0.694	0.322	0.482	0.474	0.640	1.012	0.588	0.546	0.635	0.336	0.187	0.287	0.117	0.123	0.487	0.877	0.487	0.409	0.075	0.142	0.030	0.093	0.289	0.085	0.010	0.021	0.093	0.207
3944	chr19	4737378	4769839	+	0	NA	Intergenic	AluSx|SINE|Alu	-15509	NR_027148	284424	Hs.326728	NM_174947	ENSG00000176840	MIR7-3HG	C19orf30|Huh7|LINC00306|NCRNA00306|PGSF1|uc002mbe.2	MIR7-3 host gene	ncRNA	1.188	0.951	0.666	0.277	2.441	1.207	2.858	0.065	0.139	0.507	0.453	0.880	1.603	0.100	0.104	0.337	0.573	0.127	0.171	2.137	2.332	1.408	0.422	0.173	0.201	0.520	0.838	1.781	nan	2.456	1.684	0.235	0.265	1.649	1.389	0.664	1.388	1.456	1.006	0.347	1.802	0.489	0.177	2.858	0.880	0.335	0.440	0.150	0.179
2409	chr13	101853746	101864706	+	0	NA	intron (NM_052867, intron 13 of 43)	L1ME4a|LINE|L1	209587	NM_052867	259232	Hs.525146	NM_052867	ENSG00000102452	NALCN	CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1	sodium leak channel, non-selective	protein-coding	0.668	0.983	0.537	0.095	0.407	0.197	0.329	0.089	0.088	0.070	0.120	0.066	0.299	0.020	0.090	0.790	0.498	0.310	0.480	0.339	0.377	0.395	0.163	0.118	0.136	0.298	nan	0.194	0.258	0.573	0.304	0.153	0.166	0.059	0.060	0.305	nan	0.200	0.177	6.582	0.049	0.052	0.159	0.329	0.066	0.018	0.083	0.036	0.113
4189	chr2	3903594	3922494	+	0	NA	Intergenic	Intergenic	108578	NR_037881	100505964	Hs.190267	NR_037881	ENSG00000237401	LINC01304	-	long intergenic non-protein coding RNA 1304	ncRNA	0.588	0.490	0.645	0.415	0.406	0.153	0.175	0.052	0.057	1.148	0.536	1.152	1.583	0.034	0.121	0.273	0.239	0.197	0.293	0.888	0.847	5.881	1.519	0.034	0.049	0.158	0.271	1.740	2.392	0.379	0.168	0.122	0.221	0.546	0.348	0.150	0.268	1.390	0.871	1.151	0.666	0.040	0.042	0.175	1.152	0.051	0.167	0.075	0.020
501	chr1	145967209	145970428	+	0	NA	intron (NR_104217, intron 2 of 17)	intron (NR_104217, intron 2 of 17)	-23341	NR_111936	100034743	Hs.696575	NR_003377		PDZK1P1	OTTHUMT00000038524|PDZK1P2	PDZ domain containing 1 pseudogene 1	pseudo	1.749	6.564	2.472	5.491	1.600	1.397	4.027	1.376	0.405	2.924	1.502	4.952	7.395	4.574	0.181	9.608	10.174	0.328	0.624	6.224	6.093	6.179	4.235	6.953	7.607	2.727	3.371	5.764	8.246	4.379	3.510	16.059	17.385	3.631	5.339	5.518	2.961	3.197	1.982	2.492	7.714	0.324	0.965	4.027	4.952	1.109	4.862	5.651	0.264
5944	chr4	77635865	77660019	+	0	NA	intron (NM_020859, intron 3 of 10)	intron (NM_020859, intron 3 of 10)	151238	NR_039655	100616254		NR_039655	ENSG00000283682	MIR548AH	-	microRNA 548ah	ncRNA	0.696	0.608	0.782	0.283	0.443	0.259	0.279	0.450	0.093	0.162	0.113	0.288	0.481	0.333	0.073	0.436	0.474	1.363	4.650	0.578	0.680	1.227	0.387	0.332	0.371	0.219	0.346	0.929	0.873	0.350	0.169	0.224	0.323	0.171	0.158	0.165	0.310	0.684	0.493	0.037	0.177	0.012	0.065	0.279	0.288	0.004	0.059	0.090	0.093
2650	chr14	65005636	65019444	+	0	NA	Intergenic	Intergenic	-4080	NM_172365	145376	Hs.144696	NM_172365	ENSG00000165807	PPP1R36	C14orf50	protein phosphatase 1 regulatory subunit 36	protein-coding	nan	nan	7.864	2.478	2.424	1.327	0.567	0.434	0.260	0.611	0.438	1.890	1.455	1.255	0.194	1.211	1.170	0.331	0.344	2.886	2.409	2.616	0.669	nan	5.229	0.397	0.695	4.121	nan	2.949	2.497	0.993	1.133	5.039	5.621	0.332	0.788	2.611	1.366	0.745	1.455	1.282	2.706	0.567	1.890	0.971	1.344	0.631	0.195
155	chr1	26945610	26949049	+	0	NA	Intergenic	CpG	66296	NR_031740	100302190		NR_031740	ENSG00000238705	MIR1976	hsa-mir-1976	microRNA 1976	ncRNA	7.617	6.381	nan	14.358	11.892	6.896	8.692	5.846	0.707	2.813	1.478	4.247	17.851	14.222	0.310	9.731	9.359	9.961	15.145	22.438	19.908	9.225	6.431	23.555	25.342	8.105	9.306	15.974	24.387	8.965	9.364	7.878	9.258	7.117	7.515	11.346	11.671	5.237	2.862	9.950	8.800	1.938	3.717	8.692	4.247	2.158	3.512	5.209	5.048
626	chr1	163262640	163270665	+	0	NA	intron (NM_001254748, intron 2 of 5)	MER34C_|LTR|ERV1	24929	NR_045630	8490	Hs.24950	NM_003617	ENSG00000143248	RGS5	MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129	regulator of G-protein signaling 5	protein-coding	1.066	nan	1.043	0.153	0.605	0.180	0.320	0.244	0.140	0.116	0.102	0.170	0.382	0.013	0.118	1.831	1.419	5.178	12.358	0.584	nan	0.388	0.203	0.153	0.192	0.468	0.770	0.413	nan	0.464	0.306	2.020	4.092	0.134	0.150	0.594	1.408	0.851	0.573	0.082	0.215	0.047	0.090	0.320	0.170	0.072	0.034	1.513	0.190
6175	chr5	11586954	11598526	+	0	NA	intron (NR_109988, intron 2 of 21)	L1MC|LINE|L1	-3711	NM_001288716	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding	nan	nan	nan	0.167	0.206	0.097	0.288	0.133	0.111	0.263	0.209	0.011	nan	0.073	0.130	0.759	0.417	1.267	1.305	0.258	0.298	0.108	0.048	0.170	0.185	nan	6.452	0.237	0.299	0.919	0.453	0.352	0.635	0.357	0.209	0.139	nan	0.456	0.527	0.028	0.048	0.058	0.020	0.288	0.011	0.926	0.088	0.207	0.010
7726	chr8	66052621	66066300	+	0	NA	Intergenic	Intergenic	33115	NR_038901	552859	Hs.156997	NR_038901	ENSG00000280725	LINC00251	C8orf25|NCRNA00251	long intergenic non-protein coding RNA 251	ncRNA	2.780	0.688	0.759	0.397	0.276	0.176	0.126	0.087	0.059	0.093	0.160	0.764	0.405	0.047	0.065	0.315	0.255	0.243	0.312	0.708	0.817	0.261	0.138	0.124	0.097	9.133	9.061	0.167	0.202	nan	2.543	0.192	0.228	0.230	0.204	1.451	3.616	0.779	0.669	0.016	0.049	0.062	0.326	0.126	0.764	0.390	0.222	0.044	0.629
1156	chr10	79439216	79452338	+	0	NA	Intergenic	Intergenic	-48200	NM_001271522	3778	Hs.144795	NM_002247	ENSG00000156113	KCNMA1	BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1	potassium calcium-activated channel subfamily M alpha 1	protein-coding	0.701	nan	0.955	0.737	0.470	0.239	0.735	0.088	0.086	0.287	0.145	0.119	7.927	0.066	0.062	0.338	0.200	0.154	0.189	0.633	0.860	5.944	1.131	0.091	0.139	0.151	0.252	0.318	nan	0.226	0.135	0.176	0.146	2.170	2.129	0.336	nan	1.686	0.845	0.110	0.128	0.686	0.114	0.735	0.119	0.082	0.008	0.053	0.216
3614	chr17	79415946	79426039	+	0	NA	intron (NM_001291324, intron 14 of 27)	intron (NM_001291324, intron 14 of 27)	-2778	NR_036152	100422944		NR_036152	ENSG00000266189	MIR3186	mir-3186	microRNA 3186	ncRNA	1.536	0.810	0.756	0.406	0.816	0.498	7.153	0.193	0.050	0.264	0.187	0.178	1.346	0.118	0.060	1.953	3.019	0.390	0.702	5.406	3.940	2.497	0.654	0.497	0.483	nan	0.710	0.488	1.488	1.305	1.212	1.273	2.384	0.464	0.536	0.682	0.600	nan	0.302	0.896	2.176	0.104	0.102	7.153	0.178	0.106	0.077	1.615	0.134
3057	chr16	14182162	14207078	+	0	NA	intron (NM_001308142, intron 2 of 16)	L1ME1|LINE|L1	29449	NM_001308142	57496	Hs.49143	NM_014048	ENSG00000186260	MKL2	MRTF-B|MRTFB|NPD001	MKL1/myocardin like 2	protein-coding	0.905	1.368	nan	1.517	0.824	0.437	0.158	0.568	0.136	0.438	0.177	0.446	3.646	0.060	0.094	0.452	0.293	0.195	0.317	0.530	0.573	3.763	1.585	3.012	3.041	0.537	0.850	2.825	4.726	nan	0.181	0.879	1.010	0.330	0.442	0.348	0.531	1.018	0.743	1.075	0.064	0.076	0.659	0.158	0.446	0.004	0.118	0.479	0.157
7026	chr6	147443190	147454775	+	0	NA	intron (NR_034115, intron 3 of 10)	L1ME4a|LINE|L1	-31079	NR_132442	106182249	Hs.575390	NR_132442	ENSG00000196634	LUADT1	-	lung adenocarcinoma associated transcript 1	ncRNA	nan	0.977	nan	0.177	1.268	0.664	0.274	0.083	0.166	0.364	0.136	0.146	0.313	0.028	0.093	0.403	0.270	0.438	0.538	0.223	0.361	2.321	0.846	0.295	0.282	0.332	0.498	0.339	0.327	0.628	0.267	0.327	0.464	0.488	0.911	0.332	0.525	5.274	2.378	0.019	0.085	0.033	0.082	0.274	0.146	0.017	0.070	0.231	0.065
3812	chr18	49179929	49195306	+	0	NA	Intergenic	AluSg|SINE|Alu	269205	NR_040074	100287225	Hs.448920	NR_040074	ENSG00000227115	LINC01630	-	long intergenic non-protein coding RNA 1630	ncRNA	nan	0.854	0.981	0.046	0.367	0.229	4.845	0.053	0.095	0.064	0.113	0.070	1.621	0.028	0.061	0.662	0.667	0.282	0.458	0.988	0.806	5.094	1.104	0.103	0.121	0.760	0.982	1.261	1.803	1.386	1.228	0.186	0.207	2.518	2.538	0.439	nan	2.395	1.706	0.015	0.150	0.725	0.078	4.845	0.070	1.048	0.237	0.026	0.475
3233	chr17	1300830	1306513	+	0	NA	promoter-TSS (NM_006761)	promoter-TSS (NM_006761)	-115	NM_006761	7531	Hs.513851	NM_006761	ENSG00000108953	YWHAE	14-3-3E|HEL2|KCIP-1|MDCR|MDS	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein-coding	5.291	2.893	3.204	2.527	5.272	3.013	4.260	1.499	0.198	1.353	0.576	4.438	6.337	1.254	0.104	5.305	4.740	6.141	7.609	7.832	7.960	6.557	4.874	12.300	11.982	3.723	4.973	4.695	8.579	6.581	6.736	3.023	5.060	3.685	3.637	11.972	9.861	1.885	1.130	1.671	2.309	0.662	1.346	4.260	4.438	1.806	2.824	1.165	3.324
5023	chr20	58508818	58524946	+	0	NA	intron (NM_001190827, intron 1 of 3)	intron (NM_001190827, intron 1 of 3)	1438	NM_001190827	63939	Hs.54973	NM_022106	ENSG00000196227	FAM217B	C20orf177|dJ551D2.5	family with sequence similarity 217 member B	protein-coding	2.209	2.803	1.176	1.595	1.543	0.674	0.611	0.934	0.120	0.684	0.377	1.448	1.759	1.840	0.145	4.721	nan	3.875	3.300	3.239	3.264	3.672	1.176	1.703	1.606	2.360	2.706	2.555	3.748	2.153	1.996	1.016	1.612	0.662	0.475	0.949	1.611	2.834	1.506	1.585	1.721	0.182	0.433	0.611	1.448	0.277	1.127	0.682	0.617
7295	chr7	56145083	56152195	+	0	NA	TTS (NM_001130069)	TTS (NM_001130069)	12050	NM_001258459	5260	Hs.730821	NM_006213	ENSG00000164776	PHKG1	PHKG	phosphorylase kinase catalytic subunit gamma 1	protein-coding	nan	2.501	1.873	2.902	1.442	0.835	0.236	0.394	0.247	1.281	1.073	3.704	4.694	0.108	0.137	0.552	0.679	0.557	1.017	4.723	4.256	0.882	0.461	0.657	0.567	0.554	0.895	4.004	3.376	0.229	0.216	0.239	0.233	0.589	0.431	0.387	0.758	1.128	0.620	1.486	0.391	0.228	0.308	0.236	3.704	0.361	7.690	0.042	0.156
5012	chr20	55204150	55217935	+	0	NA	intron (NM_003222, intron 5 of 6)	MER2|DNA|TcMar-Tigger	6684	NM_003222	7022	Hs.473152	NM_003222	ENSG00000087510	TFAP2C	AP2-GAMMA|ERF1|TFAP2G|hAP-2g	transcription factor AP-2 gamma	protein-coding	2.623	2.512	6.820	0.051	0.143	0.046	0.094	0.043	0.116	0.022	0.066	0.050	2.228	0.369	0.115	1.304	nan	1.874	2.246	0.170	0.174	0.100	0.071	0.469	0.495	0.148	0.194	0.108	0.144	0.678	0.609	1.423	3.551	0.083	0.059	0.141	0.194	0.174	0.289	0.277	0.349	0.014	0.052	0.094	0.050	0.141	0.037	0.696	0.036
1698	chr11	120000409	120009916	+	0	NA	intron (NM_012101, intron 1 of 8)	intron (NM_012101, intron 1 of 8)	3701	NM_012101	23650	Hs.504115	NM_012101	ENSG00000137699	TRIM29	ATDC	tripartite motif containing 29	protein-coding	0.511	0.850	0.544	0.027	0.392	0.118	0.639	0.015		0.278	0.254	0.271	0.808	0.045	0.080	0.901	nan	0.258	0.584	0.504	0.603	0.708	0.167	0.406	0.584	0.168	nan	0.187	0.333	0.399	0.181	5.664	9.841	0.459	0.248	0.097	0.214	1.407	0.728	0.210	0.233	0.040	0.033	0.639	0.271	0.068		5.461	0.026
4533	chr2	144100461	144126736	+	0	NA	intron (NM_018460, intron 6 of 13)	intron (NM_018460, intron 6 of 13)	226699	NM_018460	55843	Hs.171011	NM_018460	ENSG00000075884	ARHGAP15	BM046	Rho GTPase activating protein 15	protein-coding	0.906	nan	1.052	0.109	0.342	0.256	0.390	0.126	0.091	0.203	0.195	0.583	0.327	0.033	0.080	0.370	0.257	0.155	0.252	0.357	0.451	1.004	0.370	0.210	0.204	5.218	5.016	0.301	0.303	0.906	0.663	0.083	0.228	0.051	0.041	0.607	1.367	0.296	0.290	0.070	0.031	0.007	0.289	0.390	0.583	0.026	0.027	0.051	0.226
7329	chr7	74055118	74078024	+	0	NA	Intergenic	AluSg|SINE|Alu	-5420	NM_032999	2969	Hs.647041	NM_001518	ENSG00000263001	GTF2I	BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6	general transcription factor IIi	protein-coding	nan	1.473	1.978	1.769	1.717	1.218	2.148	1.740	0.624	1.197	0.711	2.232	2.424	2.998	0.239	3.701	3.871	2.842	nan	2.972	3.048	2.041	0.866	2.836	2.973	0.857	nan	2.730	nan	3.501	3.190	1.936	3.471	2.313	1.942	3.610	5.198	1.810	1.202	1.643	2.249	0.567	2.499	2.148	2.232	0.602	0.778	1.693	1.684
8041	chr9	9254592	9260834	+	0	NA	intron (NM_002839, intron 9 of 45)	AluJr|SINE|Alu	399695	NR_121599	101929407	Hs.649971	NR_121599		PTPRD-AS1	-	PTPRD antisense RNA 1	ncRNA	0.728	1.788	0.821	0.216	0.738	0.307	0.370	0.023	0.052	2.670	1.067	0.548	0.384		0.096	0.115	0.086	0.284	0.430	0.497	0.444	1.068	0.936	0.087	0.150	1.107	1.396	0.701	0.500	0.377	0.267	0.077	0.222	2.913	2.736	0.285	nan	6.790	3.647	0.054	0.014	0.463	0.077	0.370	0.548		0.908	0.032	0.090
3820	chr18	53113947	53181047	+	0	NA	TTS (NR_039754)	TTS (NR_039754)	1045	NR_039754	100616290		NR_039754	ENSG00000264571	MIR4529	-	microRNA 4529	ncRNA	nan	0.824	0.941	0.310	0.836	0.490	0.358	0.508	0.108	0.583	0.350	0.788	0.455	2.295	0.110	0.561	0.482	2.102	2.495	1.039	1.084	5.039	2.524	0.650	0.674	1.234	1.457	0.601	0.610	0.466	0.247	0.637	0.866	2.141	2.483	0.287	0.559	nan	1.819	0.054	0.341	0.600	0.170	0.358	0.788	0.065	0.623	0.682	0.177
7227	chr7	28389551	28399119	+	0	NA	intron (NM_182899, intron 1 of 9)	intron (NM_182899, intron 1 of 9)	55395	NM_182899	9586	Hs.437075	NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5	cAMP responsive element binding protein 5	protein-coding	1.858	2.443	1.243	1.853	5.091	2.477	0.987	0.264	0.175	2.600	0.605	4.918	2.123	0.034	0.155	0.445	0.481	0.780	nan	2.737	2.092	4.083	4.098	0.424	0.418	0.206	0.319	2.783	4.601	0.492	0.235	0.265	0.401	3.532	5.437	0.487	nan	3.973	1.857	0.147	1.096	1.075	0.629	0.987	4.918	0.211	2.528	0.103	0.297
7640	chr8	33086219	33103465	+	0	NA	Intergenic	Intergenic	235822	NM_032664	84750	Hs.458713	NM_032664	ENSG00000172728	FUT10	FUCTX	fucosyltransferase 10	protein-coding	0.629	1.132	nan	0.157	0.145	0.093	0.204	0.126	0.094	0.110	0.096	0.118	0.771	0.108	0.136	0.326	0.193	0.289	0.445	0.586	0.737	5.598	1.495	0.160	0.115	0.486	0.584	0.432	0.538	0.705	0.911	0.065	0.134	0.247	0.091	0.242	0.391	1.374	0.840	0.252	0.072	0.033	0.091	0.204	0.118	0.104	0.081	0.017	0.166
57	chr1	8128715	8139703	+	0	NA	Intergenic	Intergenic	-47816	NM_018948	54206	Hs.605445	NM_018948	ENSG00000116285	ERRFI1	GENE-33|MIG-6|MIG6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.719	nan	1.636	1.875	0.278	0.160	0.245	1.535	0.429	0.598	0.267	0.414	3.664	1.157	0.140	0.440	0.385	0.666	1.525	1.034	1.010	2.054	0.639	0.434	0.419	0.428	nan	12.503	13.860	nan	0.138	0.454	0.804	0.168	0.174	0.095	0.185	1.540	1.040	2.665	0.138	0.035	0.007	0.245	0.414	0.036	0.442	0.171	0.056
3790	chr18	47044920	47059307	+	0	NA	Intergenic	MER4C|LTR|ERV1	-33178	NM_001199345	6139	Hs.293653	NM_000985	ENSG00000215472	RPL17	L17|PD-1|RPL23	ribosomal protein L17	protein-coding	nan	0.892	0.760	0.236	0.315	0.242	3.967	0.214	0.100	0.077	0.064	0.366	0.527	0.023	0.100	0.499	0.638	0.357	0.730	1.099	1.073	2.674	0.609	0.294	0.250	0.247	0.412	0.589	0.577	1.293	1.077	0.821	0.921	0.183	0.261	0.313	nan	1.159	1.171	0.152	0.110	0.033	0.940	3.967	0.366	0.626	0.064	0.296	0.086
3660	chr18	9735726	9745016	+	0	NA	intron (NM_006868, intron 1 of 6)	intron (NM_006868, intron 1 of 6)	32143	NM_006868	11031	Hs.99528	NM_006868	ENSG00000168461	RAB31	Rab22B	RAB31, member RAS oncogene family	protein-coding	1.211	0.926	0.865	0.464	0.204	0.157	1.240	0.929	0.138	0.238	0.151	0.143	nan	0.080	0.104	0.572	0.607	0.948	2.221	0.749	0.815	nan	0.255	0.269	0.219	0.314	nan	0.377	0.536	nan	0.202	0.102	0.226	3.845	6.519	0.253	nan	nan	1.368	0.030	0.339	1.424	0.060	1.240	0.143	0.052	0.077	0.053	0.119
3435	chr17	46047204	46102669	+	0	NA	Intergenic	AluSq2|SINE|Alu	26614	NM_001278217	80279	Hs.20157	NM_025197	ENSG00000108465	CDK5RAP3	C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553	CDK5 regulatory subunit associated protein 3	protein-coding	3.384	1.958	nan	0.725	3.407	1.678	3.210	0.328	0.195	0.775	0.511	1.254	3.021	0.296	0.105	1.394	1.751	0.589	1.087	1.854	nan	3.652	0.989	1.119	1.261	2.282	3.133	2.489	nan	4.628	3.735	0.809	1.195	4.420	4.970	2.971	9.200	2.175	1.143	1.507	1.497	2.182	3.057	3.210	1.254	1.455	0.603	0.561	4.171
6605	chr6	8385688	8402248	+	0	NA	Intergenic	L1MD3|LINE|L1	41832	NM_001142541	51000	Hs.285847	NM_015948	ENSG00000124786	SLC35B3	C6orf196|CGI-19|PAPST2	solute carrier family 35 member B3	protein-coding	0.859	0.851	0.726	0.160	3.065	1.503	0.162	0.130	0.049	1.746	1.095	0.308	0.147	0.053	0.133	0.600	0.567	0.170	0.263	0.305	0.398	7.556	2.812	0.245	0.279	0.174	0.237	0.276	0.228	0.275	0.121	0.163	0.212	1.665	1.765	0.188	0.273	2.348	1.053	0.013	0.075	0.269	0.047	0.162	0.308	0.006	0.160	0.030	0.067
3307	chr17	17456202	17475289	+	0	NA	intron (NM_001267551, intron 2 of 6)	intron (NM_001267551, intron 2 of 6)	15034	NM_148173	10400	Hs.714193	NM_007169	ENSG00000133027	PEMT	PEAMT|PEMPT|PEMT2|PLMT|PNMT	phosphatidylethanolamine N-methyltransferase	protein-coding	1.059	0.630	1.039	0.683	0.606	0.374	0.731	0.086	0.042	0.190	0.099	0.997	0.980	0.049	0.054	0.595	1.058	0.316	nan	1.079	1.260	1.010	0.545	0.366	0.358	0.314	0.746	4.138	4.217	nan	1.039	0.304	0.329	0.164	0.188	0.546	0.801	1.403	0.746	4.344	1.806	0.055	0.050	0.731	0.997	0.463	2.282	0.114	0.201
7973	chr8	142668886	142680689	+	0	NA	Intergenic	MIRb|SINE|MIR	-157457	NR_102364	389690	Hs.689547	NM_207414	ENSG00000226807	MROH5	-	maestro heat like repeat family member 5	protein-coding	1.388	0.731	nan	0.075	0.333	0.190	0.196	0.051	0.041	0.053	0.090	0.121	0.878	0.028	0.034	0.189	0.168	0.082	0.151	nan	2.078	nan	0.080	0.169	0.188	0.568	0.901	1.105	1.839	0.903	1.091	0.373	0.359	0.243	0.277	0.411	0.320	0.307	0.374	4.757	0.695	0.064	0.028	0.196	0.121	0.537	0.138	0.050	0.070
35	chr1	3563865	3649254	+	0	NA	promoter-TSS (NM_001126241)	promoter-TSS (NM_001126241)	-677	NM_001204190	7161	Hs.192132	NM_005427	ENSG00000078900	TP73	P73	tumor protein p73	protein-coding	1.247	nan	2.918	1.406	1.257	0.687	0.418	0.145	0.102	0.602	0.397	0.654	5.807	0.271	0.095	0.367	0.429	0.477	0.708	7.024	6.555	1.002	0.364	0.439	0.526	0.913	nan	nan	2.549	nan	1.425	0.928	1.518	0.640	0.665	0.251	0.312	1.613	0.830	4.274	1.786	0.210	0.149	0.418	0.654	0.653	0.964	1.109	0.103
2453	chr13	112158576	112170287	+	0	NA	Intergenic	Intergenic	-83925	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA	0.678	nan	1.153	2.516	5.318	2.849	2.105	0.058	0.028	0.214	0.110	0.393	3.482	0.028	0.069	0.457	0.247	0.156	0.231	0.853	0.834	7.684	6.205	0.071	0.066	0.053	0.090	2.694	4.145	0.222	0.114	0.435	0.571	6.434	6.320	0.080	0.133	0.673	0.304	2.117	0.318	1.500	0.335	2.105	0.393	0.009	0.383	0.059	0.032
6133	chr5	1536222	1569644	+	0	NA	Intergenic	Intergenic	-28841	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding	0.530	2.769	1.465	0.441	1.248	0.609	0.210	0.270	0.168	0.192	0.215	5.548	1.469	0.108	0.106	0.333	0.292	0.263	nan	2.305	2.272	0.613	0.213	0.201	0.178	0.619	0.884	nan	5.712	nan	0.360	0.267	0.384	0.107	0.132	0.224	0.294	2.705	nan	4.087	2.589	0.023	0.033	0.210	5.548	0.098	0.680	0.091	0.052
2827	chr15	29276579	29289052	+	0	NA	intron (NM_005503, intron 1 of 13)	intron (NM_005503, intron 1 of 13)	68975	NM_001130414	321	Hs.618112	NM_005503	ENSG00000034053	APBA2	D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L	amyloid beta precursor protein binding family A member 2	protein-coding	nan	0.553	nan	0.077	0.206	0.051	0.523	0.060	0.091	0.201	0.130	0.182	0.382	0.052	0.054	3.073	5.338	0.707	0.635	0.336	0.386	0.057	0.034	0.843	0.820	0.697	1.021	0.785	0.866	nan	0.809	1.486	2.926	0.141	0.226	0.285	0.370	0.619	0.550	0.044	0.107	0.015	0.058	0.523	0.182	0.281	0.296	2.227	0.118
665	chr1	173792069	173795053	+	0	NA	promoter-TSS (NM_001171182)	promoter-TSS (NM_001171182)	216	NM_001127181	91687	Hs.531856	NM_033319	ENSG00000120334	CENPL	C1orf155|CENP-L|dJ383J4.3	centromere protein L	protein-coding	7.934	7.444	5.351	5.426	6.001	3.591	6.573	6.952	0.902	4.288	1.573	6.785	15.950	7.591	0.235	7.505	7.995	18.785	23.189	15.659	12.610	10.445	5.217	20.875	22.301	8.073	9.541	10.858	14.362	9.534	9.856	7.553	13.743	11.917	12.340	9.394	10.368	3.709	2.188	5.279	10.374	2.146	3.435	6.573	6.785	1.912	3.995	3.820	3.182
2758	chr14	99810908	99825402	+	0	NA	Intergenic	Intergenic	-80105	NM_001282237	64919	Hs.709690	NM_022898	ENSG00000127152	BCL11B	ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha	B-cell CLL/lymphoma 11B	protein-coding	1.244	0.475	0.696	0.074	0.216	0.207	0.341	0.094	0.078	0.043	0.061	0.083	0.275	0.060	0.078	0.298	0.258	0.128	0.114	0.518	0.514	0.128	0.067	0.169	0.175	5.145	5.064	0.250	0.336	1.675	1.468	0.186	0.223	0.090	0.188	0.333	0.567	0.340	0.608	0.097	0.110	0.046	1.358	0.341	0.083	0.698	0.021	0.034	0.263
1476	chr11	66044653	66057901	+	0	NA	TTS (NM_001300861)	TTS (NM_001300861)	5361	NM_020470	10897	Hs.446445	NM_020470	ENSG00000174851	YIF1A	54TM|FinGER7|YIF1|YIF1P	Yip1 interacting factor homolog A, membrane trafficking protein	protein-coding	nan	2.072	1.336	1.622	1.767	0.893	2.537	0.492	0.097	1.326	0.478	2.650	3.846	1.216	0.093	3.012	5.002	1.066	1.535	5.976	5.266	3.372	1.465	2.809	2.752	2.750	3.747	2.806	5.414	3.389	3.377	1.631	2.546	1.895	1.713	2.642	2.325	1.786	1.118	2.251	1.889	0.300	1.540	2.537	2.650	1.645	1.725	0.637	0.344
1207	chr10	106081315	106099377	+	0	NA	intron (NM_001272013, intron 1 of 1)	intron (NM_001272013, intron 1 of 1)	-1596	NM_001272012	85450	Hs.523252	NM_033397	ENSG00000148841	ITPRIP	DANGER|KIAA1754|bA127L20|bA127L20.2	inositol 1,4,5-trisphosphate receptor interacting protein	protein-coding	nan	nan	3.403	0.690	3.016	1.607	2.268	0.906	0.177	1.856	0.493	0.934	5.294	0.725	0.096	0.759	1.496	1.622	2.000	3.129	2.404	2.569	0.774	0.079	0.102	0.839	nan	1.141	1.665	0.985	1.132	0.455	0.556	2.502	3.216	0.185	nan	1.225	0.792	0.049	0.089	0.549	0.793	2.268	0.934	0.364	0.628	0.231	0.171
8405	chrX	117853709	117865210	+	0	NA	Intergenic	Intergenic	-2100	NM_001560	3597	Hs.496646	NM_001560	ENSG00000131724	IL13RA1	CD213A1|CT19|IL-13Ra|NR4	interleukin 13 receptor subunit alpha 1	protein-coding	1.025	1.153	1.746	0.715	2.499	1.074	0.432	0.578	0.097	1.161	0.431	0.378	1.178	0.566	0.060	3.463	4.649	4.178	2.339	0.198	0.186	1.619	0.388	4.970	5.006	0.172	0.228	1.640	2.695	0.660	0.560	3.307	6.828	0.741	0.690	0.262	0.506	0.545	0.433	0.116	0.141	0.215	0.063	0.432	0.378		0.699	2.886	0.065
2641	chr14	61744438	61751691	+	0	NA	5' UTR (NM_001017970, exon 1 of 1)	5' UTR (NM_001017970, exon 1 of 1)	466	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding	nan	nan	2.967	4.403	1.496	0.992	0.316	0.446	0.066	0.540	0.263	3.216	4.736	0.282	0.088	1.412	1.614	0.152	0.285	5.126	4.032	3.523	1.667	nan	4.892	0.274	0.452	4.330	nan	1.955	1.690	1.433	3.245	1.804	1.363	0.230	0.340	1.679	1.016	2.905	7.194	0.407	1.609	0.316	3.216	0.279	0.042	0.971	0.069
3007	chr15	102514046	102519952	+	0	NA	TTS (NR_003659)	TTS (NR_003659)	2297	NR_034090	100288486	Hs.644359	NR_034090	ENSG00000248472	DDX11L9	-	DEAD/H-box helicase 11 like 9	pseudo	1.930	nan	1.727	0.506	0.550	0.300	5.405	0.297	0.081	1.575	0.906	0.912	nan	0.308	0.136	0.609	0.869	0.525	0.826	5.664	5.198	1.334	0.538	0.726	0.961	1.694	2.308	1.071	0.955	1.342	0.994	0.410	0.429	2.038	1.570	0.527	0.799	4.458	1.996	10.044	4.852	1.677	0.285	5.405	0.912	1.075	1.333	0.048	0.420
904	chr1	228346520	228354986	+	0	NA	Intergenic	Intergenic	1796	NR_103539	574432	Hs.568467	NR_103539	ENSG00000203684	IBA57-AS1	C1orf148	IBA57 antisense RNA 1 (head to head)	ncRNA	4.067	nan	4.252	2.809	3.180	1.493	3.017	1.079	0.094	1.030	0.660	1.642	3.818	1.218	0.083	3.146	3.107	3.907	6.183	5.085	nan	2.976	2.430	6.503	7.164	1.686	1.939	3.128	5.044	5.434	6.179	1.149	1.559	2.149	2.399	5.081	11.371	2.042	1.237	1.310	1.271	0.405	1.199	3.017	1.642	0.469	1.278	0.242	4.222
6739	chr6	36509834	36532111	+	0	NA	Intergenic	MLT2C2|LTR|ERVL	-5679	NM_007271	11329	Hs.409578	NM_007271	ENSG00000112079	STK38	NDR|NDR1	serine/threonine kinase 38	protein-coding	nan	1.055	nan	0.720	0.661	0.290	0.910	0.579	0.180	0.359	0.169	0.897	1.706	0.400	0.133	1.546	1.725	2.163	nan	nan	1.256	1.436	0.430	3.584	3.618	0.687	1.096	1.444	1.843	1.180	0.814	2.777	5.105	1.068	1.203	0.780	1.454	1.245	0.901	0.356	0.458	0.334	0.513	0.910	0.897	0.852	0.274	3.810	0.382
8238	chr9	112069308	112084013	+	0	NA	intron (NM_018424, intron 1 of 15)	intron (NM_018424, intron 1 of 15)	6584	NM_018424	54566	Hs.591901	NM_018424	ENSG00000095203	EPB41L4B	CG1|EHM2	erythrocyte membrane protein band 4.1 like 4B	protein-coding	1.048	1.566	nan	3.495	1.447	0.729	0.254	0.132	0.054	1.050	0.677	2.230	3.170	0.199	0.073	0.183	0.296	0.924	1.337	1.359	1.200	1.431	0.446	0.861	0.924	0.472	0.736	2.210	nan	6.538	6.802	0.609	1.272	2.627	2.542	0.451	0.888	nan	0.606	0.275	1.398	0.638	0.145	0.254	2.230	0.556	0.470	1.404	0.203
2006	chr12	67460301	67475234	+	0	NA	Intergenic	Intergenic	22297	NR_120490	102724421	Hs.135774	NR_120490	ENSG00000257083	LOC102724421	-	uncharacterized LOC102724421	ncRNA	0.889	1.198	0.931	0.671	2.853	1.450	1.703	0.076	0.032	0.481	0.373	1.770	1.363	0.552	0.088	0.377	0.392	0.457	0.857	5.447	nan	2.809	0.726	0.805	0.728	1.104	1.791	0.807	1.110	0.665	0.654	0.265	0.627	0.614	0.572	0.170	0.279	1.737	1.005	0.392	0.207	0.096	0.261	1.703	1.770	0.111	0.461	0.066	0.042
8176	chr9	84428639	84449155	+	0	NA	Intergenic	Intergenic	-89455	NR_026851	347127	Hs.215235	NM_198509	ENSG00000240632	SPATA31D5P	FAM75D5|FAM75D5P	SPATA31 subfamily D member 5, pseudogene	pseudo	0.749	0.921	0.772	0.213	0.353	0.126	0.432	0.256	0.141	0.159	0.165	0.093	0.271	0.027	0.095	0.247	0.185	2.414	5.002	0.379	0.449	0.085	0.065	0.182	0.202	0.358	0.593	0.458	0.480	0.166	0.069	0.139	0.293	0.294	0.432	0.269	0.639	0.459	0.512	0.043	0.070	0.069	0.062	0.432	0.093	0.019	0.030	0.121	0.132
2245	chr13	26256313	26268765	+	0	NA	intron (NM_016529, intron 24 of 36)	intron (NM_016529, intron 24 of 36)	219627	NM_001313741	51761	Hs.444957	NM_016529	ENSG00000132932	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase phospholipid transporting 8A2	protein-coding	0.755	1.271	0.774	4.429	3.605	1.933	0.278	0.103	0.085	2.506	0.875	1.988	2.083	0.070	0.060	2.706	4.081	0.655	nan	3.273	3.573	5.573	2.297	0.092	0.083	0.163	0.290	5.435	3.845	0.580	0.276	0.949	1.235	0.126	0.150	0.724	1.330	6.197	2.951	0.380	0.173		0.090	0.278	1.988	0.047	1.211	0.429	0.188
3178	chr16	75086891	75146054	+	0	NA	intron (NM_032268, intron 1 of 4)	AluJb|SINE|Alu	34198	NM_153486	197257	Hs.380929	NM_153486	ENSG00000166816	LDHD	DLD	lactate dehydrogenase D	protein-coding	1.018	0.937	nan	1.109	0.601	0.335	0.473	0.287	0.082	0.157	0.121	0.671	0.957	0.104	0.088	0.349	0.453	0.256	0.469	0.814	0.825	0.808	0.289	0.610	0.643	0.645	1.025	3.826	4.197	0.909	0.777	0.176	0.271	0.121	0.109	0.317	0.699	1.769	1.020	0.716	0.735	0.018	0.061	0.473	0.671	0.127	1.225	0.057	0.215
2130	chr12	107519235	107528003	+	0	NA	Intergenic	Intergenic	-35984	NM_004075	1407	Hs.151573	NM_004075	ENSG00000008405	CRY1	PHLL1	cryptochrome circadian clock 1	protein-coding	1.200	1.346	nan	0.341	4.076	1.882	2.272	0.166	0.276	2.456	1.385	5.754	6.888	0.037	0.164	0.385	0.399	0.306	0.329	7.329	8.446	1.993	0.704	0.476	0.487	0.389	0.769	1.062	2.503	1.623	1.552	0.192	0.180	2.127	1.885	0.451	1.194	2.516	1.556	4.271	3.993	0.471	0.027	2.272	5.754	0.298	0.174	0.046	0.197
1028	chr10	13177395	13185231	+	0	NA	Intergenic	Intergenic	-22241	NM_018518	55388	Hs.198363	NM_018518	ENSG00000065328	MCM10	CNA43|DNA43|PRO2249	minichromosome maintenance 10 replication initiation factor	protein-coding	nan	0.701	0.817	0.323	0.409	0.164	0.317	0.297	0.230	0.101	0.083	0.342	0.257	0.068	0.085	0.457	0.349	0.301	0.408	1.217	1.345	1.640	0.325	0.168	0.288	0.427	0.585	1.505	1.673	0.660	1.093	0.131	0.229	0.503	0.411	0.270	0.497	0.332	0.369	0.044	0.443	0.049	4.423	0.317	0.342	0.176	0.052	0.025	0.215
198	chr1	33793371	33843349	+	0	NA	intron (NR_125978, intron 1 of 2)	intron (NR_125978, intron 1 of 2)	2407	NR_125978	101929464	Hs.568627	NR_125978	ENSG00000233246	LOC101929464	-	uncharacterized LOC101929464	ncRNA	2.628	nan	4.819	1.974	1.210	0.642	1.380	0.842	0.107	0.826	0.488	3.650	3.577	0.410	0.115	1.271	1.609	1.524	2.035	5.774	5.722	nan	0.600	1.694	1.688	2.577	3.365	4.265	5.420	nan	3.305	0.865	1.397	0.566	0.621	1.848	4.300	1.382	nan	2.331	1.852	0.195	1.803	1.380	3.650	0.637	1.028	0.564	1.305
2550	chr14	35589897	35593675	+	0	NA	promoter-TSS (NM_001256680)	promoter-TSS (NM_001256680)	28	NM_001256681	9692	Hs.458487	NM_014672	ENSG00000100890	KIAA0391	MRPP3|PRORP	KIAA0391	protein-coding	9.776	4.583	5.501	9.823	5.396	2.846	3.583	8.519	1.354	1.878	1.144	6.871	13.323	8.573	0.196	5.966	6.014	9.235	13.382	10.688	9.021	7.236	5.381	24.348	25.901	9.264	10.872	14.705	19.502	14.000	13.508	4.922	7.184	10.934	11.036	6.553	5.820	4.952	3.125	11.857	5.849	1.800	4.291	3.583	6.871	1.978	5.579	2.217	2.325
6240	chr5	39057253	39081087	+	0	NA	intron (NM_152756, intron 2 of 37)	MIRb|SINE|MIR	5340	NM_001285440	253260	Hs.407926	NM_152756	ENSG00000164327	RICTOR	AVO3|PIA|hAVO3	RPTOR independent companion of MTOR complex 2	protein-coding	1.100	1.400	nan	2.470	0.499	0.269	0.452	2.185	0.272	1.022	0.601	1.015	1.547	0.860	0.137	1.621	1.601	1.503	1.854	1.638	1.599	1.320	0.632	14.709	14.801	1.618	2.029	2.362	3.110	2.292	2.182	1.064	1.960	0.669	0.656	0.910	1.105	0.809	0.702	0.209	0.403	0.120	0.496	0.452	1.015	0.196	1.355	0.403	0.311
3713	chr18	30339251	30356979	+	0	NA	intron (NM_020805, intron 2 of 8)	intron (NM_020805, intron 2 of 8)	4859	NM_020805	57565	Hs.446164	NM_020805	ENSG00000197705	KLHL14	-	kelch like family member 14	protein-coding	nan	1.149	0.987	0.863	2.107	1.120	2.128	0.092	0.036	1.233	0.893	4.600	6.163	0.055	0.045	0.893	1.177	2.900	1.541	7.116	5.697	2.757	1.171	0.633	0.656	0.122	0.151	nan	2.257	0.412	0.286	0.704	1.667	7.706	7.698	0.222	0.537	5.620	3.108	0.377	0.216	3.304	0.918	2.128	4.600	0.106	0.035	0.924	0.069
913	chr1	230991287	231006028	+	0	NA	intron (NM_001136494, intron 3 of 5)	L1MC1|LINE|L1	5645	NM_032800	84886	Hs.520494	NM_032800	ENSG00000119280	C1orf198	-	chromosome 1 open reading frame 198	protein-coding	2.577	1.487	3.446	2.546	0.982	0.456	1.802	2.348	0.167	0.711	0.378	1.411	1.690	0.510	0.104	4.834	4.439	6.952	6.174	2.348	2.435	nan	1.347	4.455	4.642	0.857	1.203	nan	5.362	0.945	0.805	1.506	1.825	0.974	1.082	1.446	1.640	nan	1.015	0.315	0.320	0.065	0.536	1.802	1.411	0.256	0.620	0.454	0.358
7007	chr6	139597368	139603755	+	0	NA	intron (NM_153235, intron 2 of 9)	intron (NM_153235, intron 2 of 9)	12647	NM_153235	167838	Hs.535820	NM_153235	ENSG00000164440	TXLNB	C6orf198|LST001|MDP77|dJ522B19.2	taxilin beta	protein-coding	0.901	0.657	0.672	0.204	0.313	0.151	0.397	0.061	0.102	0.198	0.212	0.248	0.361	0.150	0.124	0.318	0.249	0.281	0.371	0.409	0.437	nan	5.868	0.275	0.187	0.731	0.799	0.221	0.200	0.547	0.216	0.075	0.181	0.432	0.489	0.136	nan	0.426	0.347	0.035	0.111	0.045	0.074	0.397	0.248	0.073	0.064	0.047	0.116
3983	chr19	14528408	14531328	+	0	NA	intron (NR_046366, intron 1 of 9)	CpG	327	NM_005804	10212	Hs.311609	NM_005804	ENSG00000123136	DDX39A	BAT1|BAT1L|DDX39|DDXL|URH49	DExD-box helicase 39A	protein-coding	8.522	6.017	6.683	6.337	7.684	4.045	8.509	4.529	1.381	3.749	1.984	8.861	10.510	4.282	0.206	5.859	5.571	9.830	12.266	13.507	9.438	11.726	5.869	21.190	23.048	6.734	8.907	8.329	12.932	14.829	14.117	4.076	4.020	12.625	17.168	8.081	13.139	7.664	3.578	9.167	4.308	3.061	4.179	8.509	8.861	2.621	3.147	2.817	4.206
4313	chr2	44768688	44778398	+	0	NA	intron (NM_024766, intron 3 of 10)	intron (NM_024766, intron 3 of 10)	184500	NM_024766	79823	Hs.468349	NM_024766	ENSG00000143919	CAMKMT	C2orf34|CLNMT|CaM KMT|Cam|KMT	calmodulin-lysine N-methyltransferase	protein-coding	1.262	nan	1.711	0.099	0.465	0.231	5.240	1.176	0.184	1.040	0.504	1.022	1.500	0.055	0.150	0.329	0.261	0.360	1.430	nan	2.304	4.592	2.174	0.445	0.440	0.589	0.715	0.338	0.367	0.590	0.246	0.253	0.343	3.614	4.926	0.518	nan	nan	0.662	0.338	0.882	1.416	0.114	5.240	1.022	0.029	0.053	0.093	0.104
2468	chr13	114198013	114208539	+	0	NA	intron (NM_017905, intron 12 of 12)	intron (NM_017905, intron 12 of 12)	-35727	NR_026580	7027	Hs.79353	NM_007111	ENSG00000198176	TFDP1	DILC|DP1|DRTF1|Dp-1	transcription factor Dp-1	protein-coding	0.802	nan	0.892	3.140	0.776	0.397	1.382	0.116	0.108	0.104	0.078	2.220	1.853	0.061	0.073	0.899	0.952	0.369	0.642	3.658	3.516	1.162	0.359	0.288	0.265	0.082	0.169	2.560	3.323	0.378	0.242	0.503	0.469	0.345	0.361	0.389	0.422	1.071	0.570	0.826	5.965	0.073	0.256	1.382	2.220	0.078	0.105	0.084	0.089
4436	chr2	96417382	96442981	+	0	NA	Intergenic	Intergenic	62548	NR_103734	150759	Hs.503463	NR_103734		LINC00342	NCRNA00342	long intergenic non-protein coding RNA 342	ncRNA	0.890	0.711	1.071	0.235	0.255	0.094	0.315	0.094	0.050	0.723	0.480	0.891	0.896	0.034	0.056	0.761	0.775	0.256	0.336	1.736	1.693	3.228	0.744	0.446	0.386	0.164	0.320	0.202	0.252	0.449	0.303	0.274	0.324	0.625	0.433	0.325	0.575	1.147	0.689	0.113	0.197	0.163	0.096	0.315	0.891	0.182	0.290	0.023	0.121
2183	chr12	122062035	122074664	+	0	NA	intron (NM_032790, intron 1 of 1)	AluSq|SINE|Alu	3894	NM_032790	84876	Hs.55148	NM_032790		ORAI1	CRACM1|IMD9|ORAT1|TAM2|TMEM142A	ORAI calcium release-activated calcium modulator 1	protein-coding	1.854	3.022	1.833	3.627	0.782	0.363	1.502	0.567	0.242	0.685	0.476	0.809	6.816	1.267	0.128	1.209	1.353	1.538	2.456	1.376	1.349	nan	1.575	1.668	1.674	1.112	1.692	5.428	8.130	1.821	1.434	0.916	1.166	2.852	3.414	1.908	4.507	3.900	1.760	2.814	6.516	0.898	0.419	1.502	0.809	0.455	1.640	0.455	1.104
1819	chr12	10305987	10346499	+	0	NA	intron (NM_001079815, intron 1 of 5)	AluSx|SINE|Alu	-1453	NM_002543	4973	Hs.412484	NM_002543	ENSG00000173391	OLR1	CLEC8A|LOX1|LOXIN|SCARE1|SLOX1	oxidized low density lipoprotein receptor 1	protein-coding	0.671	0.567	0.653	0.260	0.196	0.118	0.075	0.083	0.056	0.127	0.155	0.055	0.417	0.134	0.138	0.185	0.119	2.063	7.159	nan	0.429	0.420	0.175	0.413	0.378	0.143	0.281	0.336	0.417	0.237	0.073	0.208	0.285	0.056	0.086	0.297	0.491	0.192	0.236	0.027	0.062	0.021	0.021	0.075	0.055	0.024	0.111	0.063	0.098
4801	chr20	649925	658457	+	0	NA	intron (NM_033129, intron 1 of 1)	intron (NM_033129, intron 1 of 1)	2632	NM_033129	85508	Hs.355284	NM_033129	ENSG00000215397	SCRT2	ZNF898B	scratch family transcriptional repressor 2	protein-coding	1.994	2.182	0.494	0.297	0.731	0.247	1.618	0.088	0.033	1.103	0.601	0.070	2.393	0.088	0.059	10.622	12.765	0.164	0.157	0.641	0.509	0.700	0.200	0.224	0.167	3.126	3.540	0.285	0.302	5.359	5.991	3.409	5.421	0.161	0.192	2.629	2.437	0.231	0.192	0.962	0.094	0.033	0.046	1.618	0.070	2.120	0.155	2.530	0.201
1459	chr11	64033576	64041798	+	0	NA	TTS (NM_001316314)	TTS (NM_001316314)	-14124	NM_001170726	56834	Hs.523763	NM_020155	ENSG00000173264	GPR137	C11orf4|GPR137A|TM7SF1L1	G protein-coupled receptor 137	protein-coding	nan	2.048	3.160	2.758	2.417	1.111	1.992	1.339	0.326	1.042	0.663	1.979	9.324	4.505	0.235	3.593	5.454	2.811	4.180	4.062	3.892	4.794	1.638	5.082	5.168	3.413	5.044	4.376	5.470	3.140	3.416	2.555	5.003	2.845	3.104	2.431	3.835	2.602	1.249	3.693	2.745	0.762	1.613	1.992	1.979	1.331	2.248	3.512	1.310
5761	chr3	189003354	189043933	+	0	NA	intron (NM_198485, intron 4 of 5)	intron (NM_198485, intron 4 of 5)	-65260	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA	1.268	2.064	0.871	0.494	4.909	2.588	0.989	1.367	0.184	0.313	0.214	0.890	1.066	0.027	0.086	0.280	0.208	0.871	3.309	0.486	0.685	6.782	2.560	0.339	0.321	0.473	0.938	1.182	1.512	0.606	0.285	0.142	0.204	1.264	1.408	0.371	0.578	1.284	0.758	0.243	0.151	0.366	0.145	0.989	0.890	0.137	0.170	0.046	0.161
5279	chr22	41680839	41686353	+	0	NA	intron (NM_001317930, intron 1 of 15)	AluJb|SINE|Alu	-1341	NM_002883	5905	Hs.183800	NM_002883	ENSG00000100401	RANGAP1	Fug1|RANGAP|SD	Ran GTPase activating protein 1	protein-coding	2.365	nan	3.502	3.585	2.507	1.509	1.968	1.310	0.349	1.376	0.739	4.272	7.068	6.026	0.202	3.098	2.884	3.655	5.798	3.941	3.160	5.062	2.602	3.029	3.078	2.300	nan	5.347	8.515	nan	4.659	1.264	2.126	3.890	6.058	2.788	3.361	3.012	1.642	1.042	1.870	1.003	0.912	1.968	4.272	1.375	5.484	0.548	1.231
6292	chr5	65948867	65976918	+	0	NA	intron (NM_198828, intron 1 of 5)	L2c|LINE|L2	70716	NM_198828	375449	Hs.595458	NM_015183	ENSG00000069020	MAST4	-	microtubule associated serine/threonine kinase family member 4	protein-coding	0.842	1.206	0.675	0.091	0.243	0.204	0.191	0.225	0.098	0.095	0.108	0.167	0.358	0.015	0.128	0.188	0.155	0.240	0.326	0.224	0.284	1.697	0.586	0.136	0.138	0.153	0.263	0.251	0.222	0.431	0.321	0.130	0.174	1.862	2.795	0.108	0.158	0.608	0.450	0.045	0.136	0.480	0.060	0.191	0.167	0.046	0.188	0.043	0.027
5908	chr4	55509776	55533094	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-2660	NM_000222	3815	Hs.479754	NM_000222	ENSG00000157404	KIT	C-Kit|CD117|PBT|SCFR	KIT proto-oncogene receptor tyrosine kinase	protein-coding	nan	0.939	1.114	1.858	2.164	1.046	0.558	0.425	0.159	0.594	0.350	1.079	2.779	0.042	0.089	2.237	3.170	1.928	2.325	2.529	2.121	2.910	0.938	1.207	1.286	0.163	0.228	3.361	4.206	0.463	0.460	1.807	4.493	1.542	1.080	0.070	0.158	5.484	3.335	1.019	2.078	0.313	0.553	0.558	1.079	0.108	0.061	1.558	0.068
6153	chr5	5581869	5590407	+	0	NA	Intergenic	MER66C|LTR|ERV1	163352	NM_015325	23379	Hs.449296	NM_015325	ENSG00000164151	ICE1	KIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.774	0.828	3.231	0.115	0.824	0.394	0.105	0.168	0.243	0.460	0.239	0.210	0.768	0.139	0.098	0.540	0.338	0.316	nan	0.421	0.529	0.152	0.140	0.218	0.232	0.159	0.366	nan	0.763	nan	3.308	0.247	0.257	1.229	2.299	0.696	3.277	5.409	nan	0.141	0.552	0.212	0.273	0.105	0.210	0.216	0.879	0.069	0.174
2041	chr12	79939134	79961347	+	0	NA	Intergenic	AluSx1|SINE|Alu	134550	NM_002583	5074	Hs.643130	NM_002583	ENSG00000177425	PAWR	PAR4|Par-4	pro-apoptotic WT1 regulator	protein-coding	nan	0.718	0.543	0.142	0.229	0.122	0.186	0.556	0.227	0.089	0.152	0.123	0.395	0.287	0.106	0.372	0.303	1.654	5.975	0.516	0.620	0.471	0.227	0.388	0.366	0.452	0.674	nan	0.587	0.400	0.210	0.144	0.242	0.053	0.112	0.240	0.481	nan	0.561	0.063	0.088	0.029	0.063	0.186	0.123	0.035	0.051	0.058	0.067
1467	chr11	65147831	65155274	+	0	NA	promoter-TSS (NM_001278251)	promoter-TSS (NM_001278251)	-380	NM_001278251	283130	Hs.661604	NM_182556	ENSG00000162241	SLC25A45	-	solute carrier family 25 member 45	protein-coding	nan	3.947	2.644	4.616	3.978	2.087	3.020	2.375	0.496	2.211	0.693	4.628	10.716	3.612	0.196	3.398	5.713	4.517	8.700	8.675	7.520	7.353	2.584	6.126	7.216	4.053	5.417	7.589	8.944	4.757	4.578	2.693	3.602	4.090	4.880	1.002	2.333	3.399	1.674	5.090	4.022	0.908	1.292	3.020	4.628	1.208	2.679	1.956	0.497
4548	chr2	152434751	152471135	+	0	NA	intron (NM_001164507, intron 91 of 181)	intron (NM_001164507, intron 91 of 181)	138058	NM_001164508	4703	Hs.588655	NM_004543	ENSG00000183091	NEB	NEB177D|NEM2	nebulin	protein-coding	nan	0.583	nan	0.094	0.270	0.150	0.204	0.098	0.048	0.051	0.096	0.102	0.350	0.021	0.093	0.493	0.317	0.222	0.292	0.180	0.234	0.222	0.104	0.366	0.378	0.316	0.511	0.212	0.249	0.334	0.154	3.447	5.054	0.041	0.054	0.267	0.481	0.334	0.292	0.041	0.079	0.021	0.048	0.204	0.102	0.011	0.025	7.174	0.095
4324	chr2	47399313	47405278	+	0	NA	promoter-TSS (NM_001305626)	promoter-TSS (NM_001305626)	-949	NM_001305626	805	Hs.468442	NM_001743	ENSG00000143933	CALM2	CAMII|LQT15|PHKD|PHKD2|caM	calmodulin 2	protein-coding	6.455	nan	5.298	5.073	5.831	2.899	4.469	2.686	0.188	3.296	1.383	7.042	12.797	4.841	0.124	7.672	8.122	7.180	9.658	nan	9.979	9.195	5.019	15.093	15.458	4.764	5.596	8.644	11.638	10.152	10.697	3.706	8.070	4.889	4.726	10.017	nan	nan	2.479	5.003	8.717	0.944	3.029	4.469	7.042	1.373	2.875	2.705	3.110
704	chr1	182565104	182589423	+	0	NA	Intergenic	L1ME2|LINE|L1	-3715	NM_002928	6004	Hs.413297	NM_002928	ENSG00000143333	RGS16	A28-RGS14|A28-RGS14P|RGS-R	regulator of G-protein signaling 16	protein-coding	nan	nan	8.963	3.653	3.304	1.926	2.830	3.547	0.384	4.273	1.529	1.474	5.341	0.173	0.092	1.430	2.335	1.293	2.097	10.455	nan	5.347	2.065	nan	2.676	2.296	2.856	6.499	6.862	5.078	6.727	1.938	2.320	5.715	6.054	1.422	nan	3.493	1.775	2.039	1.935	1.666	1.721	2.830	1.474	0.943	2.892	0.965	0.852
5405	chr3	77087242	77104760	+	0	NA	intron (NM_002942, intron 1 of 25)	L2c|LINE|L2	6707	NM_001290040	6092	Hs.13305	NM_002942	ENSG00000185008	ROBO2	SAX3	roundabout guidance receptor 2	protein-coding	1.369	0.746	1.185	0.580	0.488	0.210	0.335	0.064	0.065	0.305	0.339	0.281	1.989	1.469	0.108	0.284	0.221	0.198	nan	1.566	1.222	2.697	0.979	0.232	0.257	2.461	2.884	0.790	1.412	0.692	0.756	0.073	0.103	1.904	1.286	2.807	5.491	0.715	0.444	0.999	0.801	0.429	1.721	0.335	0.281	0.322	0.485		1.937
1462	chr11	64098867	64128738	+	0	NA	intron (NM_032251, intron 14 of 26)	AluSx|SINE|Alu	-4426	NR_106977	102466815		NR_106977	ENSG00000278359	MIR7155	hsa-mir-7155	microRNA 7155	ncRNA	nan	1.169	1.633	1.237	0.775	0.327	0.907	0.292	0.106	0.677	0.298	0.488	1.933	0.894	0.106	2.195	3.338	0.721	1.148	1.875	1.606	2.443	0.592	1.143	1.093	1.430	2.147	1.385	2.186	1.683	1.540	0.989	1.134	1.067	1.072	0.820	1.691	1.588	0.897	1.342	0.479	0.183	0.720	0.907	0.488	0.649	1.009	0.395	0.380
7060	chr6	155646216	155652409	+	0	NA	Intergenic	Intergenic	-13695	NM_016020	51106	Hs.279908	NM_016020	ENSG00000029639	TFB1M	CGI-75|CGI75|mtTFB|mtTFB1	transcription factor B1, mitochondrial	protein-coding	nan	1.359	0.975	0.748	0.546	0.259	1.180	0.230	0.129	0.103	0.187	1.127	0.634	0.069	0.111	0.672	0.538	1.527	1.969	0.994	nan	12.521	8.970	0.230	0.332	0.525	0.597	1.676	1.656	0.748	0.332	0.412	0.653	0.772	1.397	0.332	nan	0.916	0.403	0.167	0.125	0.122	0.619	1.180	1.127	0.094	0.050	0.066	0.061
4478	chr2	119974308	120003537	+	0	NA	intron (NM_182915, intron 2 of 5)	(TG)n|Simple_repeat|Simple_repeat	7538	NM_018234	55240	Hs.647822	NM_018234	ENSG00000115107	STEAP3	AHMIO2|STMP3|TSAP6|dudlin-2|dudulin-2|pHyde	STEAP3 metalloreductase	protein-coding	1.684	nan	2.004	1.247	0.905	0.416	0.740	0.791	0.089	1.309	0.788	1.830	nan	0.123	0.081	0.700	1.194	0.256	0.452	2.235	nan	3.239	0.866	1.289	1.165	1.416	1.822	3.330	5.043	1.514	1.410	0.865	1.395	1.327	1.322	0.655	1.324	2.156	0.920	0.857	2.242	0.483	0.506	0.740	1.830	0.655	1.511	1.101	0.249
4752	chr2	232741895	232776707	+	0	NA	Intergenic	Intergenic	-2293	NR_031717	100302126		NR_031717	ENSG00000222246	MIR1471	MIRN1471|hsa-mir-1471	microRNA 1471	ncRNA	0.869	nan	0.956	0.397	0.209	0.147	0.162	0.040	0.083	0.109	0.123	0.138	3.365	0.138	0.123	0.376	0.204	0.307	0.461	0.294	0.361	0.622	0.161	0.322	0.343	0.154	0.337	5.373	nan	0.391	0.245	0.228	0.228	0.568	0.748	0.239	0.377	1.274	0.722	2.660	0.263	0.230	0.032	0.162	0.138	0.034	0.085	0.020	0.025
2694	chr14	78487889	78507609	+	0	NA	Intergenic	Intergenic	-138967	NM_001330195	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding	1.226	0.831	0.775	0.124	0.677	0.333	0.958	0.097	0.181	0.340	0.236	0.323	1.720	0.038	0.098	0.336	0.161	0.306	0.274	0.582	0.677	1.665	0.707	0.207	0.190	0.279	0.519	0.516	nan	0.776	0.364	0.076	0.160	2.758	2.152	0.207	0.313	4.141	nan	0.316	0.713	0.551	0.419	0.958	0.323	0.178	0.021	0.020	0.100
2657	chr14	66972954	66976988	+	0	NA	5' UTR (NM_020806, exon 1 of 23)	5' UTR (NM_020806, exon 1 of 23)	846	NM_001024218	10243	Hs.208765	NM_020806	ENSG00000171723	GPHN	GEPH|GPH|GPHRYN|HKPX1|MOCODC	gephyrin	protein-coding	nan	3.499	5.213	6.335	3.438	2.231	5.068	1.117	0.316	1.520	1.104	4.683	8.695	4.487	0.207	7.007	7.313	3.604	4.869	10.705	7.974	1.368	0.497	nan	12.413	5.167	6.589	6.855	nan	14.298	18.419	5.439	11.417	0.362	0.324	5.866	5.740	5.334	3.763	5.403	9.072	0.048	6.213	5.068	4.683	2.098	3.037	3.278	1.622
7373	chr7	92262184	92279065	+	0	NA	intron (NM_001145306, intron 5 of 7)	L1MC4|LINE|L1	-50916	NR_109929	257415	Hs.18564	NM_152789	ENSG00000234545	FAM133B	-	family with sequence similarity 133 member B	protein-coding	nan	0.986	nan	0.318	0.573	0.315	0.331	1.905	0.086	0.205	0.196	0.057	0.344	0.750	0.187	0.420	0.223	0.669	0.870	0.188	0.260	1.084	0.303	1.542	1.577	0.606	0.967	1.146	0.795	2.037	1.524	0.365	0.605	1.188	1.822	2.835	7.632	0.930	0.873	0.033	0.069	0.322	0.047	0.331	0.057	0.023	0.066	0.387	1.740
1623	chr11	110155540	110168932	+	0	NA	intron (NM_001260494, intron 1 of 11)	MLT1L|LTR|ERVL-MaLR	5201	NM_001260495	5962	Hs.263671	NM_002906	ENSG00000137710	RDX	DFNB24	radixin	protein-coding	1.586	1.688	1.572	2.942	0.823	0.466	1.449	0.596	0.155	1.457	0.859	2.687	3.571	1.511	0.168	12.413	nan	2.564	3.516	4.951	4.652	1.995	0.789	2.678	2.692	3.504	nan	2.512	3.807	2.283	2.126	3.492	6.168	3.967	3.909	1.412	1.563	1.412	0.871	1.984	1.560	1.161	3.486	1.449	2.687	0.659	0.752	1.892	0.248
890	chr1	225836948	225846573	+	0	NA	promoter-TSS (NM_001008493)	promoter-TSS (NM_001008493)	-915	NM_018212	55740	Hs.497893	NM_018212	ENSG00000154380	ENAH	ENA|MENA|NDPP1	enabled homolog (Drosophila)	protein-coding	6.723	nan	4.742	5.339	4.864	2.252	4.828	5.796	1.115	3.385	1.513	5.258	6.539	7.809	0.340	4.679	5.171	6.468	10.511	8.654	nan	7.040	3.876	10.924	10.900	1.776	2.459	6.062	9.310	4.526	5.014	1.963	3.608	4.551	3.669	6.744	6.277	2.391	1.248	3.009	2.194	1.108	2.897	4.828	5.258	1.112	1.923	1.372	2.333
3699	chr18	24557535	24563753	+	0	NA	intron (NM_031422, intron 4 of 5)	intron (NM_031422, intron 4 of 5)	-114836	NM_001317384	361	Hs.315369	NM_001650	ENSG00000171885	AQP4	MIWC|WCH4	aquaporin 4	protein-coding	0.712	1.203	0.909	0.056	0.120	0.140	0.442	0.085		0.049	0.090	0.077	0.401	0.017	0.114	0.598	0.328	8.375	9.889	0.280	0.452	3.332	1.308	0.193	0.174	0.089	0.165	0.321	0.270	0.348	0.142	0.205	0.329	1.142	3.101	0.247	0.365	1.323	1.304	0.036	0.028	0.428	0.257	0.442	0.077	0.048	0.016	0.048	
1926	chr12	46821992	46890721	+	0	NA	intron (NR_125378, intron 3 of 3)	intron (NR_125378, intron 3 of 3)	78466	NR_125381	100288798	Hs.525922	NR_125377		LOC100288798	-	uncharacterized LOC100288798	ncRNA	0.831	nan	0.684	0.171	0.337	0.163	0.244	1.074	0.153	0.094	0.134	0.125	0.150	2.700	0.149	0.327	0.196	0.318	0.732	0.279	0.343	0.182	0.101	0.272	0.270	0.163	0.250	0.525	0.414	0.400	0.146	0.149	0.220	0.099	0.207	0.446	1.132	0.438	0.494	0.110	0.107	0.023	0.040	0.244	0.125	0.011	0.107	0.028	0.237
1282	chr11	2439463	2454043	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-2478	NM_014555	29850	Hs.272287	NM_014555	ENSG00000070985	TRPM5	LTRPC5|MTR1	transient receptor potential cation channel subfamily M member 5	protein-coding	0.479	0.629	0.608	0.109	0.224	0.099	0.211	0.066		0.108	0.076	0.082	0.601	0.074	0.055	3.409	4.822	0.280	0.408	0.453	0.528	0.772	0.272	7.993	8.324	0.145	0.310	0.109	0.123	0.406	0.306	2.274	2.185	0.165	0.255	0.051	0.154	1.058	0.555	0.042	0.049	0.046	0.017	0.211	0.082	0.020	0.606	0.916	0.039
6891	chr6	107419021	107459108	+	0	NA	Intergenic	Intergenic	-3428	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding	2.054	nan	nan	1.282	1.218	0.688	1.249	0.162	0.133	0.376	0.197	0.919	1.872	0.849	0.134	9.049	10.499	0.798	0.930	1.341	nan	1.756	0.612	1.348	1.283	1.098	1.376	1.098	1.369	nan	1.882	0.514	1.157	1.781	1.410	1.385	1.583	0.877	0.534	0.928	1.031	0.526	0.593	1.249	0.919	0.352	0.751	0.409	0.537
5144	chr21	43808561	43836604	+	0	NA	Intergenic	L1ME3|LINE|L1	-1389	NM_001243467	53347	Hs.473912	NM_018961	ENSG00000160185	UBASH3A	CLIP4|STS-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing A	protein-coding	nan	0.961	0.939	0.553	0.294	0.111	0.218	0.035	0.100	0.145	0.143	0.269	0.529	0.043	0.072	1.611	1.823	2.253	1.773	0.488	0.565	nan	0.529	1.666	1.655	0.129	nan	0.438	0.447	1.568	1.411	4.156	6.169	0.269	0.194	0.287	0.468	1.180	0.860	0.063	0.164	0.051	0.560	0.218	0.269	0.296	0.285	4.907	0.186
1694	chr11	119375385	119387830	+	0	NA	Intergenic	Intergenic	-85912	NM_001311162	7070	Hs.644697	NM_006288	ENSG00000154096	THY1	CD90|CDw90	Thy-1 cell surface antigen	protein-coding	1.337	0.939	1.076	0.119	0.628	0.403	1.171	0.066		0.125	0.197	0.357	0.556	0.137	0.105	0.485	nan	0.096	0.227	0.437	0.445	1.840	0.603	0.124	0.145	0.252	nan	0.281	0.417	1.592	2.373	0.652	0.700	0.482	0.502	1.921	7.903	0.818	0.594	0.929	0.367	0.046	0.205	1.171	0.357	0.337	0.891	0.128	5.178
7321	chr7	73118214	73137215	+	0	NA	intron (NM_001165903, intron 1 of 9)	intron (NM_001165903, intron 1 of 9)	2067	NR_036247	100422948		NR_036247	ENSG00000265724	MIR4284	mir-4284	microRNA 4284	ncRNA	nan	0.795	1.371	0.872	0.733	0.264	0.705	0.970	0.596	0.951	0.492	0.604	1.113	0.469	0.109	0.854	1.446	0.814	nan	0.810	0.884	1.934	0.553	0.307	0.344	1.338	nan	2.341	nan	2.182	2.137	0.451	0.679	1.978	3.402	0.699	0.993	1.462	0.772	0.701	0.816	0.785	1.352	0.705	0.604	1.552	1.593	0.177	0.293
6820	chr6	56104410	56113029	+	0	NA	intron (NM_001318751, intron 1 of 30)	intron (NM_001318751, intron 1 of 30)	3659	NM_001318751	81578	Hs.47629	NM_030820	ENSG00000124749	COL21A1	COLA1L|FP633	collagen type XXI alpha 1 chain	protein-coding	1.481	5.464	nan	0.624	0.243	0.055	0.788	0.431	0.075	0.255	0.185	0.070	5.863	0.088	0.131	0.381	0.261	0.263	0.399	0.435	0.522	4.571	1.310	0.330	0.365	0.782	0.962	2.508	1.880	0.550	0.289	0.267	0.375	1.646	0.987	0.472	1.064	0.978	0.706	1.949	0.146	0.189	1.422	0.788	0.070	0.022	0.153	0.023	0.121
6266	chr5	54887254	54900912	+	0	NA	Intergenic	L1MC4|LINE|L1	-63177	NM_176895	8611	Hs.696231	NM_003711	ENSG00000067113	PLPP1	LLP1a|LPP1|PAP-2a|PAP2|PPAP2A	phospholipid phosphatase 1	protein-coding	nan	nan	1.396	0.174	0.332	0.213	0.597	2.101	0.566	0.229	0.158	0.105	2.274	0.068	0.125	1.930	2.169	4.444	4.903	0.341	0.360	nan	0.343	0.896	0.948	3.299	4.310	0.596	0.634	nan	0.566	0.562	0.953	1.377	1.216	0.280	0.392	0.937	0.701	0.267	0.111	0.301	0.070	0.597	0.105	0.219	0.238	0.246	0.072
7069	chr6	157613153	157641405	+	0	NA	Intergenic	Intergenic	118012	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding	nan	1.527	1.091	2.035	2.134	1.043	0.979	0.114	0.057	0.393	0.269	1.821	1.205	0.061	0.103	0.405	0.526	0.244	0.331	1.749	nan	2.274	0.754	0.330	0.351	0.297	0.497	1.750	2.056	0.904	0.546	0.334	0.430	0.810	0.708	1.388	nan	1.442	0.690	3.207	1.587	0.146	0.143	0.979	1.821	0.130	2.154	0.206	0.729
3183	chr16	77463993	77487996	+	0	NA	Intergenic	L2c|LINE|L2	-6983	NM_199355	170692	Hs.188746	NM_139054	ENSG00000140873	ADAMTS18	ADAMTS21|KNO2|MMCAT	ADAM metallopeptidase with thrombospondin type 1 motif 18	protein-coding	0.767	1.449	nan	3.257	1.693	0.795	0.763	0.092	0.068	0.360	0.139	3.091	4.610	0.018	0.087	0.492	0.773	0.445	0.628	1.321	1.483	2.198	0.716	0.308	0.335	0.092	0.177	2.499	2.262	0.397	0.285	0.673	1.112	0.557	0.311	0.144	0.373	1.687	0.924	4.081	0.278	0.103	0.215	0.763	3.091	0.081	0.059	0.849	0.117
3079	chr16	19548994	19556903	+	0	NA	intron (NM_001323577, intron 5 of 12)	intron (NM_001323577, intron 5 of 12)	-13789	NM_001300743	57020	Hs.654964	NM_020314	ENSG00000103544	C16orf62	-	chromosome 16 open reading frame 62	protein-coding	1.067	1.159	nan	2.133	0.768	0.244	0.858	0.111	0.121	0.374	0.345	0.769	1.839	0.068	0.085	0.390	0.373	0.234	0.894	1.324	1.558	7.124	2.229	0.343	0.258	0.630	0.774	8.378	13.241	nan	0.372	0.140	0.248	0.734	0.922	0.686	1.847	2.538	0.804	1.071	0.359	0.157	0.968	0.858	0.769	0.097	0.409	0.063	0.624
481	chr1	120834023	120842132	+	0	NA	promoter-TSS (NM_001100910)	promoter-TSS (NM_001100910)	-928	NM_001100910	653820	Hs.339665	NM_001100910	ENSG00000188610	FAM72B	p17	family with sequence similarity 72 member B	protein-coding	3.840	2.922	3.429	2.535	2.291	1.219	3.681	4.230	0.535	1.598	0.837	3.099	12.376	3.780	0.175	3.172	3.849	5.855	8.135	7.687	6.706	3.383	1.119	5.812	5.748	4.952	6.586	3.617	4.454	3.707	3.958	1.115	2.940	1.582	1.960	4.228	5.658	1.766	0.923	2.709	3.985	1.142	2.482	3.681	3.099	1.875	4.642	0.940	2.059
867	chr1	216598069	216609157	+	0	NA	Intergenic	AluSx|SINE|Alu	-6875	NM_007123	7399	Hs.655974	NM_007123	ENSG00000042781	USH2A	RP39|US2|USH2|dJ1111A8.1	usherin	protein-coding	1.118	1.182	1.465	1.075	2.649	1.116	0.528	0.048	0.101	0.384	0.349	1.327	nan	0.045	0.098	0.481	0.310	0.390	0.524	1.439	1.526	nan	0.076	0.444	0.478	0.265	nan	0.549	0.500	0.438	0.172	0.085	0.167	0.459	0.402	0.801	2.503	0.963	0.734	0.037	0.177	0.068	4.303	0.528	1.327	0.027	0.046	0.045	0.279
7728	chr8	66119573	66163393	+	0	NA	Intergenic	L2|LINE|L2	-48908	NR_038901	552859	Hs.156997	NR_038901	ENSG00000280725	LINC00251	C8orf25|NCRNA00251	long intergenic non-protein coding RNA 251	ncRNA	1.331	0.715	0.627	0.516	0.363	0.194	0.129	0.116	0.099	0.140	0.168	1.125	0.353	0.040	0.094	0.223	0.175	0.300	0.374	1.489	1.194	0.150	0.071	0.089	0.118	4.743	4.912	0.241	0.314	nan	0.395	0.131	0.194	0.109	0.131	0.229	0.445	0.885	0.730	0.018	0.071	0.035	0.067	0.129	1.125	0.069	0.072	0.045	0.059
3669	chr18	12700448	12705672	+	0	NA	promoter-TSS (NM_020232)	promoter-TSS (NM_020232)	73	NM_020232	56984	Hs.464652	NM_020232	ENSG00000128789	PSMG2	CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1	proteasome assembly chaperone 2	protein-coding	5.555	3.581	3.984	5.998	4.823	3.044	2.207	2.749	0.490	2.233	1.071	6.388	8.347	4.236	0.182	9.242	8.387	7.293	10.576	12.033	12.317	14.363	8.024	12.540	13.693	3.004	4.238	5.241	8.545	8.216	8.462	4.909	6.941	8.532	10.144	6.840	5.982	4.685	2.711	3.146	3.162	1.614	3.631	2.207	6.388	1.937	1.630	1.553	1.923
3442	chr17	46945338	46951690	+	0	NA	Intergenic	AluJr|SINE|Alu	-21634	NM_001002027	516	Hs.80986	NM_005175	ENSG00000159199	ATP5G1	ATP5A|ATP5G	ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9)	protein-coding	1.566	1.299	nan	0.096	0.435	0.455	0.162	0.080	0.025	0.172	0.159	0.113	0.457	0.086	0.171	0.408	0.363	0.200	0.357	0.422	nan	0.763	0.144	0.470	0.394	0.226	0.359	0.734	nan	2.806	2.997	0.225	0.176	0.325	0.279	2.707	7.690	0.541	0.601	0.026	0.125	0.088	0.202	0.162	0.113	0.016	0.191	0.031	7.231
7187	chr7	18718509	18724107	+	0	NA	intron (NM_178425, intron 11 of 24)	intron (NM_178425, intron 11 of 24)	172412	NM_001204148	9734	Hs.196054	NM_014707	ENSG00000048052	HDAC9	HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding	nan	0.984	nan	0.047	0.236	0.144	0.069	0.255	0.028	0.083	0.198		0.326	0.040	0.133	nan	0.288	8.056	4.835	0.382	0.384	0.239	0.152	2.622	2.328	0.827	1.027	0.333	0.337	0.301	0.145	0.127	0.227	0.216	0.174	0.328	0.788	0.519	0.527	0.039	0.034	0.052	0.142	0.069		0.089	0.017	0.018	0.087
229	chr1	39248849	39253515	+	0	NA	Intergenic	MamRep434|DNA|TcMar-Tigger	74313	NM_022157	64121	Hs.532461	NM_022157	ENSG00000116954	RRAGC	GTR2|RAGC|TIB929	Ras related GTP binding C	protein-coding	6.416	nan	0.652	0.208	0.470	0.344	0.598	0.081	0.124	0.345	0.193	0.238	0.575	0.171	0.109	0.194	0.219	0.034	0.264	0.539	0.451	nan	0.078	0.156	0.159	0.274	0.368	0.886	1.096	nan	1.220	0.495	0.847	0.053	0.507	0.504	1.218	1.083	nan	0.024	0.057		0.051	0.598	0.238	2.898	0.307	0.235	0.081
2059	chr12	85011958	85064874	+	0	NA	Intergenic	Intergenic	268192	NM_018057	55117	Hs.44424	NM_018057	ENSG00000072041	SLC6A15	NTT73|SBAT1|V7-3|hv7-3	solute carrier family 6 member 15	protein-coding	0.781	0.738	0.618	0.137	0.547	0.310	0.121	0.279	0.149	0.109	0.150	0.114	0.299	0.043	0.123	0.321	0.195	0.640	0.565	0.502	0.586	0.600	0.237	0.415	0.383	6.560	6.527	0.403	0.397	0.557	0.286	0.188	0.326	2.079	2.083	0.309	0.557	0.681	0.573	0.023	0.086	0.383	0.053	0.121	0.114	0.088	0.047	0.108	0.092
315	chr1	54698002	54831103	+	0	NA	intron (NM_001009955, intron 4 of 16)	intron (NM_001009955, intron 4 of 16)	62436	NR_103541	619518	Hs.591438	NM_001034847	ENSG00000198711	SSBP3-AS1	C1orf191|MST128|MSTP128	SSBP3 antisense RNA 1	ncRNA	2.169	1.044	3.510	0.429	1.217	0.634	0.881	0.316	0.104	0.419	0.237	0.467	0.690	0.162	0.103	0.637	0.960	0.316	0.504	1.483	1.566	1.099	0.345	0.463	0.480	1.453	2.112	1.374	1.649	3.238	3.008	0.555	0.801	0.501	0.580	2.116	nan	1.560	0.965	0.383	0.221	0.151	0.409	0.881	0.467	0.704	0.299	0.265	2.882
1827	chr12	11111717	11174946	+	0	NA	intron (NM_001291314, intron 2 of 6)	L2a|LINE|L2	-3820	NM_176890	259296	Hs.688194	NM_176890	ENSG00000212126	TAS2R50	T2R50|T2R51|TAS2R51	taste 2 receptor member 50	protein-coding	0.825	0.625	0.802	0.239	0.209	0.129	0.102	0.194	0.059	0.115	0.142	0.083	0.287	0.058	0.140	0.202	0.157	1.865	0.727	nan	0.449	0.435	0.213	2.897	2.990	0.382	0.538	0.345	0.353	0.379	0.184	0.185	0.260	0.052	0.048	0.312	0.605	0.250	0.285	0.040	0.078	0.014	0.055	0.102	0.083	0.012	0.019	0.055	0.115
4842	chr20	8732256	8740966	+	0	NA	intron (NM_182734, intron 23 of 32)	MER65A|LTR|ERV1	-313090	NM_001172646	5332	Hs.472101	NM_000933	ENSG00000101333	PLCB4	ARCND2|PI-PLC	phospholipase C beta 4	protein-coding	0.695	1.357	0.684	0.465	0.310	0.147	0.419	0.266	0.130	0.125	0.121	0.123	0.417	0.025	0.064	0.555	0.555	0.196	0.339	0.484	0.404	8.181	6.747	0.309	0.297	0.876	1.400	4.626	4.165	0.727	0.438	0.227	0.331	0.208	0.788	0.179	0.535	1.177	0.898	0.029	0.051	0.011	0.027	0.419	0.123	0.113	2.750	0.068	0.188
2501	chr14	25929844	25942586	+	0	NA	Intergenic	L2b|LINE|L2	-416712	NM_001304476	29091	Hs.508958	NM_014178	ENSG00000168952	STXBP6	HSPC156|amisyn	syntaxin binding protein 6	protein-coding	nan	0.631	0.539	0.083	0.165	0.089	0.099	0.132	0.139	0.074	0.064	0.059	0.323	0.045	0.103	0.639	1.019	6.431	3.278	0.266	0.360	0.186	0.047	0.515	0.669	0.252	0.336	0.216	nan	0.546	0.284	0.237	0.364	0.070	0.116	0.227	0.581	0.324	0.379	0.104	0.048	0.007	0.023	0.099	0.059	0.023	0.040	0.101	0.095
2270	chr13	36358130	36366542	+	0	NA	intron (NM_001330071, intron 16 of 16)	intron (NM_001330071, intron 16 of 16)	67662	NM_001195415	9201	Hs.507755	NM_004734	ENSG00000133083	DCLK1	CL1|CLICK1|DCAMKL1|DCDC3A|DCLK	doublecortin like kinase 1	protein-coding	1.253	0.979	1.035	0.042	0.132	0.076	0.157	0.079	0.057	0.075	0.167	0.428	0.425	0.039	0.068	0.505	0.511	0.146	0.061	0.701	0.808	0.427	0.215	0.141	0.095	5.014	4.933	0.234	0.334	1.611	1.520	0.236	0.292	0.463	0.457	1.546	5.044	0.440	0.345	0.040	0.116	0.192	0.888	0.157	0.428	0.432	0.072	0.093	1.411
6828	chr6	56808914	56824119	+	0	NA	intron (NM_001144769, intron 2 of 96)	intron (NM_001144769, intron 2 of 96)	2910	NM_001144769	667	Hs.604915	NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding	2.150	1.273	nan	0.985	0.274	0.168	1.296	1.236	0.168	0.392	0.265	0.170	1.314	0.990	0.139	0.524	0.409	0.890	1.349	0.759	0.677	1.680	0.429	2.873	2.954	3.559	4.287	1.889	2.617	1.486	1.296	0.516	0.775	0.474	0.623	0.667	0.977	1.002	0.740	0.293	0.257	0.050	0.125	1.296	0.170	0.275	0.812	0.117	0.326
4852	chr20	11227629	11231390	+	0	NA	Intergenic	Intergenic	24522	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA	0.628	nan	0.675	0.210	0.630	0.087	0.748	0.251	0.216	0.250	0.064	0.329	0.433	2.911	0.083	1.052	1.269	10.969	11.345	0.319	0.476	1.829	0.405	0.194	0.507	2.740	2.740	0.337	0.473	1.166	1.064	0.292	0.795	0.690	0.859	0.243	0.596	1.029	1.152	0.030	0.196	0.103	0.188	0.748	0.329		0.054	0.210	0.098
6460	chr5	137875970	137881166	+	0	NA	exon (NM_004730, exon 2 of 11)	exon (NM_004730, exon 2 of 11)	421	NM_001291975	2107	Hs.483494	NM_004730	ENSG00000120705	ETF1	D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	5.518	3.745	nan	2.749	4.759	2.624	1.582	3.978	0.279	1.751	0.627	3.977	9.556	4.670	0.184	3.377	3.134	9.071	13.622	5.818	5.552	6.624	3.686	18.949	19.950	5.338	6.462	5.654	8.165	7.717	9.080	4.272	7.584	7.201	8.855	4.615	5.802	2.459	1.361	1.592	2.860	1.131	1.722	1.582	3.977	0.967	5.086	1.679	0.994
5829	chr4	6779793	6786117	+	0	NA	Intergenic	Intergenic	-1504	NM_014743	9778	Hs.79276	NM_014743	ENSG00000170871	KIAA0232	-	KIAA0232	protein-coding	3.194	2.886	nan	7.280	2.068	1.430	3.608	1.988	0.204	3.848	1.284	4.898	5.871	2.606	0.106	5.916	7.059	4.034	6.746	6.615	5.256	6.525	2.520	10.014	10.027	1.297	1.780	5.295	8.323	4.701	6.399	2.447	6.013	2.044	1.697	3.709	3.066	nan	2.058	1.417	10.653	0.538	2.180	3.608	4.898	0.664	1.964	1.985	1.094
2648	chr14	64853403	64856890	+	0	NA	exon (NM_005956, exon 1 of 28)	exon (NM_005956, exon 1 of 28)	387	NM_005956	4522	Hs.652308	NM_005956	ENSG00000100714	MTHFD1	MTHFC|MTHFD	methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1	protein-coding	12.625	nan	6.224	7.800	4.659	2.320	6.717	5.702	0.985	1.566	1.254	6.254	10.472	5.151	0.183	6.959	6.149	7.996	9.991	12.304	10.515	9.038	4.396	19.641	20.839	6.090	8.395	9.913	17.579	16.610	19.427	6.864	7.811	11.240	13.153	9.311	7.989	7.639	3.876	5.522	4.684	1.958	4.008	6.717	6.254	1.787	3.090	1.527	2.576
7954	chr8	139269205	139295446	+	0	NA	intron (NM_015912, intron 3 of 19)	intron (NM_015912, intron 3 of 19)	226740	NM_015912	51059	Hs.126024	NM_015912	ENSG00000147724	FAM135B	C8ORFK32	family with sequence similarity 135 member B	protein-coding	nan	0.906	2.681	0.127	0.218	0.116	0.151	0.082	0.061	0.658	0.225	0.077	0.569	0.037	0.075	1.619	1.981	0.177	0.124	0.418	0.534	2.306	1.321	nan	0.147	1.009	1.298	0.634	0.905	1.257	1.312	0.870	1.210	0.856	1.067	1.592	6.231	2.155	1.076	0.026	0.102	0.248	0.154	0.151	0.077	0.226	1.671	0.732	4.807
5877	chr4	41419462	41464076	+	0	NA	intron (NM_014988, intron 1 of 26)	AluSx3|SINE|Alu	79121	NM_001289122	22998	Hs.335163	NM_014988	ENSG00000064042	LIMCH1	LIMCH1A|LMO7B	LIM and calponin homology domains 1	protein-coding	0.779	nan	nan	1.642	0.536	0.234	0.043	0.812	0.115	0.364	0.304	0.376	0.491	0.051	0.082	0.717	0.731	3.823	2.775	0.345	0.374	0.124	0.073	0.148	0.154	1.202	1.674	1.728	2.183	1.801	1.551	0.171	0.315	0.041	0.045	0.459	1.114	3.283	1.608	0.230	0.203	0.019	0.109	0.043	0.376	0.035	0.228	0.043	0.435
5314	chr22	50569947	50588382	+	0	NA	intron (NM_001164105, intron 15 of 25)	AluJb|SINE|Alu	-6320	NM_001164106	54456	Hs.62880	NM_018995	ENSG00000073146	MOV10L1	CHAMP|DJ402G11.8	Mov10 RISC complex RNA helicase like 1	protein-coding	0.830	0.934	nan	1.345	3.272	1.529	2.932	0.109	0.067	0.875	0.435	2.139	0.864	0.074	0.127	0.373	0.380	0.228	0.263	4.486	4.295	1.902	0.590	0.347	0.339	0.163	0.300	2.016	3.086	0.532	0.406	0.199	0.233	0.854	1.711	0.097	0.256	2.770	1.348	0.535	0.237	0.062	1.485	2.932	2.139	0.261	0.640	0.048	0.054
3784	chr18	46064041	46074299	+	0	NA	intron (NM_001142397, intron 2 of 12)	intron (NM_001142397, intron 2 of 12)	3743	NM_001142397	9811	Hs.145230	NM_014772	ENSG00000134030	CTIF	Gm672|KIAA0427	cap binding complex dependent translation initiation factor	protein-coding	nan	1.524	2.509	1.741	1.108	0.628	4.693	1.047	0.135	0.337	0.215	2.155	3.846	0.690	0.042	2.947	2.909	1.709	3.483	3.689	3.015	7.163	1.614	1.159	1.207	0.842	1.132	1.600	2.331	2.238	2.714	1.029	1.978	3.130	3.715	2.629	nan	3.116	2.329	0.538	1.146	0.475	1.213	4.693	2.155	0.867	2.213	0.588	0.698
4479	chr2	120111723	120147701	+	0	NA	intron (NM_001079863, intron 3 of 3)	intron (NM_001079863, intron 3 of 3)	4461	NM_001079863	1622	Hs.78888	NM_020548	ENSG00000155368	DBI	ACBD1|ACBP|CCK-RP|EP	diazepam binding inhibitor, acyl-CoA binding protein	protein-coding	1.382	nan	nan	0.398	0.643	0.353	0.336	0.831	0.188	0.208	0.172	0.433	1.536	0.290	0.087	0.508	0.477	0.699	1.093	0.718	0.670	1.072	0.384	1.308	1.366	1.501	2.051	0.892	1.097	1.490	1.338	0.328	0.602	0.244	0.216	0.995	3.350	0.604	0.408	0.265	0.207	0.050	0.101	0.336	0.433	0.468	0.336	0.182	0.892
1851	chr12	15506300	15518816	+	0	NA	intron (NM_030667, intron 1 of 26)	AluSx|SINE|Alu	37367	NM_002848	5800	Hs.160871	NM_002848	ENSG00000151490	PTPRO	GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O	protein tyrosine phosphatase, receptor type O	protein-coding	0.792	1.267	1.864	1.542	1.470	0.952	2.003	0.426		1.191	0.752	0.086	2.531	0.035	0.115	0.286	0.330	0.144	0.798	nan	3.400	6.244	1.502	0.256	0.278	0.435	0.687	0.308	0.555	0.424	0.162	0.096	0.219	1.626	2.404	0.316	0.572	1.631	1.018	0.089	0.613	0.335	0.506	2.003	0.086		0.154	0.016	0.167
4542	chr2	149632752	149690554	+	0	NA	intron (NM_004522, intron 1 of 25)	intron (NM_004522, intron 1 of 25)	28861	NM_004522	3800	Hs.435557	NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding	1.630	nan	1.682	1.264	5.131	2.632	2.122	0.125	0.103	1.496	0.793	1.359	2.648	0.073	0.101	0.951	1.269	0.221	0.354	1.148	0.910	2.911	0.991	0.429	0.461	0.845	1.245	1.106	1.657	0.919	1.040	0.591	0.906	2.772	3.689	0.366	0.574	1.934	0.976	0.256	0.215	0.876	1.217	2.122	1.359	0.352	0.145	0.734	0.099
3327	chr17	21186910	21206412	+	0	NA	intron (NM_002756, intron 1 of 11)	intron (NM_002756, intron 1 of 11)	5313	NM_002756	5606	Hs.514012	NM_002756	ENSG00000034152	MAP2K3	MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2	mitogen-activated protein kinase kinase 3	protein-coding	nan	nan	nan	1.066	2.164	1.003	0.624	0.914	0.083	0.763	0.279	0.999	1.798	1.035	0.126	1.582	2.683	1.032	2.010	1.335	1.147	2.209	0.479	0.717	0.640	0.907	1.512	3.064	4.617	2.278	2.496	0.450	0.764	0.494	0.596	0.814	nan	1.368	0.844	0.249	0.574	0.078	0.614	0.624	0.999	0.958	4.131	0.203	0.233
5535	chr3	128591335	128602532	+	0	NA	Intergenic	Intergenic	-1400	NR_033426	28976	Hs.567482	NM_014049	ENSG00000177646	ACAD9	NPD002	acyl-CoA dehydrogenase family member 9	protein-coding	4.218	nan	2.631	1.861	3.816	2.252	1.679	2.607	0.296	1.858	0.883	2.288	2.510	0.955	0.090	3.737	2.702	3.346	4.926	4.401	4.345	7.238	4.328	6.058	6.098	3.243	nan	2.746	4.371	5.780	5.547	3.022	4.375	1.701	1.877	3.045	3.420	2.513	1.565	1.083	1.018	0.205	0.983	1.679	2.288	0.638	0.798	0.803	1.160
7618	chr8	22733104	22744680	+	0	NA	intron (NR_125433, intron 2 of 3)	intron (NR_125433, intron 2 of 3)	3407	NR_125433	101929237	Hs.677838	NR_125433	ENSG00000248738	LOC101929237	-	uncharacterized LOC101929237	ncRNA	nan	0.529	nan	0.031	2.430	1.512	0.199	0.072	0.056	0.242	0.156	2.024	0.374	0.037	0.084	0.360	0.223	0.129	0.231	nan	7.000	nan	0.101	0.235	0.163	0.084	0.145	2.078	1.905	0.353	0.198	0.282	0.192	0.102	0.118	0.128	0.230	nan	nan	0.437	1.104		0.027	0.199	2.024	0.184	0.086	0.060	0.032
2263	chr13	34115170	34122344	+	0	NA	intron (NM_001243476, intron 3 of 17)	intron (NM_001243476, intron 3 of 17)	132215	NM_001243476	90627	Hs.156551	NM_052851	ENSG00000133121	STARD13	ARHGAP37|DLC2|GT650|LINC00464	StAR related lipid transfer domain containing 13	protein-coding	2.814	2.901	2.388	3.191	3.002	1.632	1.495	2.142	0.228	1.938	1.069	5.355	6.154	1.492	0.143	8.490	8.657	5.124	4.214	9.710	10.755	8.479	6.528	5.423	5.355	5.034	5.224	7.200	10.828	5.081	4.739	4.316	7.629	3.459	4.325	7.165	7.361	2.370	1.129	4.616	2.494	0.712	1.802	1.495	5.355	0.391	2.293	3.931	1.543
3386	chr17	37023139	37040577	+	0	NA	intron (NR_073384, intron 1 of 7)	intron (NR_073384, intron 1 of 7)	5746	NM_006148	3927	Hs.741156	NM_006148	ENSG00000002834	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding	nan	1.923	1.370	0.963	2.690	1.515	1.405	1.510	0.340	0.864	0.469	1.255	5.733	2.807	0.107	2.776	4.094	1.416	2.373	nan	1.935	2.623	0.823	3.499	3.992	1.092	1.457	2.791	3.584	nan	1.731	1.102	2.409	1.428	1.651	1.284	3.078	1.067	0.604	1.041	1.609	0.317	0.749	1.405	1.255	0.467	1.071	1.206	1.117
5302	chr22	46894623	46911835	+	0	NA	intron (NM_014246, intron 1 of 34)	intron (NM_014246, intron 1 of 34)	29838	NM_014246	9620	Hs.252387	NM_014246	ENSG00000075275	CELSR1	ADGRC1|CDHF9|FMI2|HFMI2|ME2	cadherin EGF LAG seven-pass G-type receptor 1	protein-coding	0.659	0.816	nan	0.115	0.275	0.102	4.405	0.091	0.094	0.063	0.071	0.606	0.296	0.133	0.106	0.327	0.284	0.272	0.360	0.462	0.548	0.875	0.316	0.365	0.418	0.137	0.288	0.343	0.484	0.461	0.316	0.180	0.216	0.272	0.394	0.079	0.127	0.355	0.407	0.286	0.026	0.054	0.184	4.405	0.606	0.085	0.065	0.029	0.014
317	chr1	55430110	55465750	+	0	NA	intron (NM_182532, intron 1 of 2)	intron (NM_182532, intron 1 of 2)	1593	NM_182532	199964	Hs.663950	NM_182532	ENSG00000143001	TMEM61	-	transmembrane protein 61	protein-coding	0.936	2.062	2.272	2.467	0.410	0.262	0.466	0.123	0.084	0.923	0.316	0.124	4.658	0.091	0.101	0.854	1.684	0.427	0.517	1.156	1.071	2.996	0.832	0.761	0.798	0.336	0.621	4.207	3.876	0.503	0.278	0.541	0.609	0.966	0.896	0.234	nan	2.379	1.283	0.222	0.190	0.243	0.180	0.466	0.124	0.049	1.981	0.172	0.104
4555	chr2	156063180	156081360	+	0	NA	Intergenic	Intergenic	517177	NM_001260509	3760	Hs.591606	NM_002239	ENSG00000162989	KCNJ3	GIRK1|KGA|KIR3.1	potassium voltage-gated channel subfamily J member 3	protein-coding	nan	0.867	nan	0.133	0.265	0.133	0.099	0.156	0.097	0.134	0.092	0.073	0.260	0.030	0.078	0.249	0.192	0.167	0.217	0.195	0.186	0.421	0.214	0.325	0.306	4.201	4.398	0.299	0.325	0.648	0.259	0.144	0.223	0.104	0.087	0.319	0.456	0.352	0.283	0.034	0.024	0.016	0.044	0.099	0.073	0.076	0.067	0.049	0.103
3954	chr19	6048034	6076000	+	0	NA	intron (NM_134433, intron 1 of 16)	AluJb|SINE|Alu	48647	NM_000635	5990	Hs.465709	NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding	2.252	2.283	0.897	1.571	3.387	1.802	1.038	0.453	0.104	1.629	0.801	3.885	3.995	0.058	0.079	0.262	0.185	0.256	0.609	2.451	3.045	1.042	1.562	0.231	0.267	2.036	2.960	3.043	nan	1.062	0.757	0.123	0.212	1.685	0.997	0.190	0.207	3.667	2.277	0.515	0.551	0.224	0.023	1.038	3.885	0.446	1.437	0.014	0.088
2071	chr12	89339396	89356443	+	0	NA	Intergenic	L2b|LINE|L2	65550	NR_038385	728084	Hs.132563	NR_038385	ENSG00000246363	LOC728084	-	uncharacterized LOC728084	ncRNA	0.829	2.471	0.558	1.038	2.260	1.149	0.914	0.525	0.218	0.333	0.246	1.687	5.480	0.045	0.125	0.345	0.318	0.250	0.412	2.146	2.518	3.621	0.808	0.197	0.298	0.705	0.956	2.011	1.728	0.331	0.170	0.102	0.284	0.893	0.902	0.098	0.154	4.476	2.106	3.394	2.850	0.162	0.014	0.914	1.687	0.017	0.897	0.087	0.036
5816	chr4	50249	55477	+	0	NA	promoter-TSS (NM_001039127)	promoter-TSS (NM_001039127)	-316	NM_182524	152687	Hs.709469	NM_182524	ENSG00000272602	ZNF595	-	zinc finger protein 595	protein-coding	3.250	2.168	3.216	1.638	2.126	1.013	1.110	1.822	0.589	2.748	1.578	4.189	0.752	2.028	0.332	4.257	3.946	9.839	14.322	1.919	2.146	nan	1.504	2.709	2.509	3.600	5.365	2.056	3.203	1.734	0.850	1.444	2.087	0.296	0.535	1.019	1.268	nan	2.059	0.510	1.284	0.108	0.531	1.110	4.189	0.489	3.050	0.516	0.280
6784	chr6	44663650	44684171	+	0	NA	Intergenic	Intergenic	-154292	NR_134609	105375075	Hs.123393	NR_134609		LOC105375075	-	uncharacterized LOC105375075	ncRNA	1.328	0.889	1.103	0.133	0.185	0.093	0.274	0.170	0.070	0.076	0.090	0.093	0.321	0.042	0.126	0.448	0.303	0.283	0.532	0.301	0.412	0.121	0.098	0.245	0.324	0.134	0.268	0.313	nan	0.595	0.398	0.216	0.322	0.102	0.103	1.517	5.141	0.458	0.533	0.149	0.134	0.023	0.089	0.274	0.093		0.039	0.091	2.092
3896	chr18	72953939	72990170	+	0	NA	intron (NM_001308210, intron 1 of 1)	(TGAA)n|Simple_repeat|Simple_repeat	48570	NM_001308210	10194	Hs.284217	NM_005786	ENSG00000179981	TSHZ1	CAA|NY-CO-33|SDCCAG33|TSH1	teashirt zinc finger homeobox 1	protein-coding	nan	nan	0.901	0.550	1.491	0.872	0.858	0.252	0.049	1.432	0.839	2.388	0.679	0.101	0.101	1.724	1.807	1.361	2.186	2.158	nan	2.932	0.931	0.586	0.591	0.290	0.414	2.272	nan	6.901	6.696	1.503	2.255	3.514	3.812	0.189	0.251	1.928	1.132	0.215	0.397	0.814	0.933	0.858	2.388	0.085	0.590	1.135	0.123
1007	chr10	5613267	5633476	+	0	NA	Intergenic	L1ME2|LINE|L1	14710	NR_134491	105376382	Hs.460282	NR_134491	ENSG00000242147	LOC105376382	-	uncharacterized LOC105376382	ncRNA	0.566	2.226	1.013	1.124	0.612	0.361	1.182	0.192	0.095	0.256	0.126	3.029	4.711	0.045	0.078	0.593	0.651	0.337	0.785	1.804	1.608	1.552	0.477	0.182	0.150	0.106	0.245	2.335	2.785	0.192	0.123	0.234	0.330	0.250	0.278	0.207	0.334	1.193	0.768	2.062	0.859	0.024	0.032	1.182	3.029	0.300	0.257	0.078	0.031
1443	chr11	61579582	61585831	+	0	NA	promoter-TSS (NM_001281501)	promoter-TSS (NM_001281501)	6	NR_031729	100302263		NR_031729	ENSG00000149485	MIR1908	MIRN1908|hsa-mir-1908|mir-1908	microRNA 1908	ncRNA	nan	4.291	2.691	7.083	8.498	3.517	5.100	3.466	0.439	3.054	1.077	7.046	11.040	6.135	0.191	7.635	8.399	4.752	7.554	17.704	14.981	8.404	5.263	8.680	8.883	2.962	3.828	7.741	10.785	5.864	6.549	3.601	7.337	7.957	6.571	3.759	6.278	3.786	2.226	7.439	6.405	2.184	3.392	5.100	7.046	2.255	3.434	4.312	2.760
4441	chr2	98278458	98293853	+	0	NA	promoter-TSS (NR_038386)	promoter-TSS (NR_038386)	-51	NR_038386	728537	Hs.469369	NR_038386	ENSG00000228486	LINC01125	-	long intergenic non-protein coding RNA 1125	ncRNA	1.997	1.462	2.522	1.036	1.233	0.617	2.614	0.503	0.084	1.298	0.745	2.427	2.504	0.654	0.096	2.713	3.979	1.821	2.368	2.061	1.864	8.350	3.918	3.201	3.288	1.297	1.822	1.205	1.978	1.826	2.115	0.942	1.689	2.227	1.749	0.686	0.707	1.282	0.686	1.265	0.986	0.402	0.727	2.614	2.427	0.389	0.884	0.506	0.273
6141	chr5	3392531	3396915	+	0	NA	Intergenic	Intergenic	109395	NR_104618	102467075	Hs.652949	NR_104618	ENSG00000250716	LINC01017	-	long intergenic non-protein coding RNA 1017	ncRNA	0.359	0.619	6.143	0.041	0.587	0.546	1.522	0.139	0.111	0.082	0.243	1.758	0.890	0.099	0.096	0.652	1.009	0.219	nan	9.388	8.685	0.127	0.055	0.030	0.075	0.164	0.218	nan	0.166	nan	18.998	0.633	0.975	0.028	0.115	0.254	0.232	0.181	nan	0.012	1.200	0.010	1.228	1.522	1.758	2.632	0.047	0.905	0.055
1186	chr10	100061437	100088036	+	0	NA	Intergenic	MIRc|SINE|MIR	-46729	NM_032211	84171	Hs.306814	NM_032211	ENSG00000138131	LOXL4	LOXC	lysyl oxidase like 4	protein-coding	nan	nan	0.769	0.230	2.693	1.365	0.284	0.157	0.031	0.230	0.110	1.965	0.473	0.024	0.061	0.325	0.378	0.155	0.335	0.841	1.055	2.834	1.052	0.118	0.121	0.395	nan	2.072	2.406	0.411	0.480	0.187	0.179	0.205	0.152	0.503	nan	0.453	0.466	0.027	0.529	0.024	0.041	0.284	1.965	0.202	0.203	0.026	0.294
7220	chr7	26955792	26965629	+	0	NA	Intergenic	Intergenic	-56348	NM_003930	8935	Hs.200770	NM_003930	ENSG00000005020	SKAP2	PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R	src kinase associated phosphoprotein 2	protein-coding	1.160	0.971	1.233	0.089	0.297	0.212	0.158	0.152	0.082	0.110	0.186	0.120	0.263	0.066	0.201	4.926	2.611	11.364	nan	0.455	0.463	0.120	0.074	1.141	1.141	0.670	1.034	0.386	0.373	0.311	0.140	0.523	0.750	0.121	0.178	0.388	nan	0.680	0.628	0.091	0.063	0.029	0.090	0.158	0.120	0.040	0.010	0.111	0.075
2240	chr13	24004425	24028082	+	0	NA	Intergenic	L1MEe|LINE|L1	-8386	NM_014363	26278	Hs.159492	NM_014363	ENSG00000151835	SACS	ARSACS|DNAJC29|PPP1R138|SPAX6	sacsin molecular chaperone	protein-coding	1.586	1.011	1.129	0.695	0.158	0.041	0.244	1.139	0.332	0.140	0.140	0.214	0.912	0.138	0.072	1.042	0.967	0.459	nan	1.164	1.101	0.557	0.169	0.212	0.318	0.679	1.008	1.147	1.365	4.698	4.744	0.429	0.758	0.078	0.111	1.823	4.034	1.849	1.216	0.038	0.732	0.040	1.287	0.244	0.214	0.658	0.890	0.263	2.209
5241	chr22	31587061	31590958	+	0	NA	intron (NM_001135825, intron 3 of 4)	intron (NM_001135825, intron 3 of 4)	-19241	NM_005569	3985	Hs.474596	NM_005569	ENSG00000182541	LIMK2	-	LIM domain kinase 2	protein-coding	nan	0.536	0.535	0.185	1.561	0.796	0.496	0.419	0.205	0.001	0.064	0.273	0.996	0.112	0.098	1.120	1.718	0.541	nan	0.604	0.838	0.262	0.250	0.615	0.796	0.621	nan	0.319	0.290	0.441	0.336	10.397	7.890	0.323	0.662	0.309	nan	0.241	0.288	0.698	1.297	0.049	0.974	0.496	0.273	0.967	0.053	4.056	0.065
4222	chr2	15177376	15192883	+	0	NA	Intergenic	Intergenic	409914	NM_001291410	151354	Hs.260855	NM_145175	ENSG00000162981	FAM84A	NSE1|PP11517	family with sequence similarity 84 member A	protein-coding	0.995	0.986	2.062	1.043	0.309	0.227	0.909	0.041	0.042	0.434	0.197	0.146	4.037	0.021	0.114	0.355	0.291	0.211	0.251	0.879	0.853	5.001	0.855	0.179	0.157	0.792	1.203	2.617	nan	1.109	1.254	0.236	0.303	0.534	0.453	0.463	nan	1.381	0.894	1.002	0.460	0.195	0.582	0.909	0.146	1.312	2.679	0.090	0.262
7748	chr8	73667677	73676506	+	0	NA	intron (NM_004770, intron 2 of 2)	intron (NM_004770, intron 2 of 2)	27811	NR_110656	101926908	Hs.680588	NR_110656	ENSG00000253726	LOC101926908	-	uncharacterized LOC101926908	ncRNA	1.424	0.785	2.111	2.357	0.806	0.328	0.252	0.111	0.042	1.763	0.756	2.961	1.280	0.025	0.049	0.506	0.487	0.516	0.375	1.629	2.471	2.870	0.833	1.331	1.398	0.918	1.229	2.370	2.961	0.466	0.287	0.988	1.453	2.043	2.369	0.442	1.159	5.762	2.532	0.616	1.621	0.584	0.151	0.252	2.961	0.011	1.161	1.980	0.393
2573	chr14	45071976	45090517	+	0	NA	Intergenic	L4|LINE|RTE	104634	NR_135257	105370473	Hs.180134	NR_135257	ENSG00000258747	LOC105370473	-	uncharacterized LOC105370473	ncRNA	nan	0.956	nan	1.709	0.428	0.184	0.249	0.116	0.086	0.111	0.093	0.281	1.060	0.047	0.121	0.320	0.143	0.211	0.274	0.345	0.427	2.258	0.804	0.235	0.212	0.310	0.432	0.505	0.509	0.733	0.318	0.098	0.143	0.271	0.391	0.217	0.413	0.886	0.786	3.430	0.111	0.067	0.082	0.249	0.281	0.037	0.033	0.016	0.026
2984	chr15	90559775	90619449	+	0	NA	intron (NM_198526, intron 1 of 4)	intron (NM_198526, intron 1 of 4)	39625	NR_036135	100422841		NR_036135	ENSG00000265871	MIR3174	-	microRNA 3174	ncRNA	nan	nan	nan	0.979	1.684	0.895	0.337	0.275	0.214	0.913	0.520	2.567	2.545	0.085	0.078	1.666	2.166	0.355	0.659	1.228	1.224	nan	0.441	5.274	5.601	0.405	0.639	3.162	3.191	nan	0.356	1.508	2.274	0.684	0.636	0.332	nan	0.475	0.380	1.002	1.308	0.137	0.174	0.337	2.567	0.225	0.552	1.566	0.137
7930	chr8	128948084	128953509	+	0	NA	intron (NR_003367, intron 2 of 8)	intron (NR_003367, intron 2 of 8)	10173	NR_103558	641384	Hs.629674	NM_001037234	ENSG00000280055	TMEM75	-	transmembrane protein 75	ncRNA	nan	nan	nan	0.211	0.640	0.217	0.094	0.578	0.176	0.173	0.152	0.132	nan	0.170	0.060	1.964	2.198	0.611	1.006	0.425	0.536	0.811	0.332	nan	nan	0.608	0.798	1.277	1.476	0.548	0.447	0.356	0.405	0.157	0.156	0.393	0.680	0.348	0.306	0.279	0.149	0.107	0.043	0.094	0.132	6.133	0.186	0.079	0.154
3988	chr19	17406662	17418236	+	0	NA	intron (NM_024527, intron 1 of 4)	intron (NM_024527, intron 1 of 4)	1833	NM_024527	79575	Hs.515664	NM_024527	ENSG00000127220	ABHD8	-	abhydrolase domain containing 8	protein-coding	1.754	1.805	4.610	1.344	1.920	1.055	1.632	0.593	0.332	0.935	0.495	2.259	3.612	1.508	0.136	1.492	2.236	1.819	2.734	4.555	3.768	4.588	1.811	1.961	1.948	1.967	2.689	3.563	4.616	3.081	2.944	0.713	1.118	2.008	2.123	2.330	3.686	2.661	1.260	1.875	1.452	0.545	0.550	1.632	2.259	0.403	2.721	0.429	1.355
6167	chr5	10282475	10311601	+	0	NA	intron (NM_138809, intron 1 of 5)	AluSz|SINE|Alu	11130	NM_138809	134147	Hs.192586	NM_138809	ENSG00000164237	CMBL	JS-1	carboxymethylenebutenolidase homolog	protein-coding	nan	nan	nan	3.567	2.761	1.431	0.714	0.265	0.332	2.103	1.567	4.297	nan	0.317	0.147	0.341	0.214	0.540	0.767	4.814	4.775	3.254	0.791	0.266	0.230	nan	3.763	3.955	3.716	1.447	1.399	0.272	0.329	2.707	3.225	0.324	nan	4.100	2.107	2.332	2.098	0.746	0.344	0.714	4.297	0.467	0.763	0.085	0.161
4347	chr2	51226534	51260778	+	0	NA	intron (NM_001330081, intron 2 of 5)	L1PA7|LINE|L1	16018	NM_001330085	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding	1.602	nan	1.092	1.648	2.683	1.457	0.504	0.113	0.122	2.970	1.902	2.499	3.628	0.038	0.112	0.524	0.677	0.309	0.379	2.197	2.422	3.478	1.079	0.386	0.449	4.702	5.699	3.744	4.545	3.068	2.788	0.162	0.356	2.165	2.693	0.673	1.301	1.076	0.616	1.556	1.637	0.579	0.239	0.504	2.499	0.739	0.678	0.118	0.183
4239	chr2	17757364	17771709	+	0	NA	intron (NM_003385, intron 1 of 3)	intron (NM_003385, intron 1 of 3)	42729	NM_003385	7447	Hs.444212	NM_003385	ENSG00000163032	VSNL1	HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1	visinin like 1	protein-coding	0.723	0.562	0.857	0.300	0.119	0.100	0.206	0.089	0.020	0.176	0.098	0.050	1.919	0.022	0.134	0.397	0.319	2.685	6.824	0.218	0.273	0.233	0.096	0.379	0.285	0.695	1.107	0.485	nan	0.441	0.216	0.365	0.321	0.047	0.060	0.168	nan	0.322	0.302	0.761	0.217	0.007	0.038	0.206	0.050	0.211	0.050	0.042	0.121
908	chr1	229355900	229374339	+	0	NA	Intergenic	Intergenic	-41690	NM_001271998	5867	Hs.296169	NM_004578	ENSG00000168118	RAB4A	HRES-1|HRES-1/RAB4|HRES1|RAB4	RAB4A, member RAS oncogene family	protein-coding	1.222	nan	3.747	1.683	0.574	0.397	0.691	0.122	0.086	0.317	0.288	0.467	1.167	0.064	0.135	0.671	0.752	1.392	5.050	0.899	nan	2.999	0.860	1.117	1.283	1.345	1.685	5.667	6.344	0.746	0.505	0.228	0.323	2.128	3.638	0.448	1.028	1.325	0.820	0.112	0.097	0.564	0.091	0.691	0.467	0.121	0.535	0.113	0.201
3127	chr16	34738929	34745794	+	0	NA	promoter-TSS (NR_034018)	promoter-TSS (NR_034018)	-820	NR_034018	100130700	Hs.97712	NR_034018		TP53TG3HP	-	TP53 target 3 family member H, pseudogene	pseudo	0.442	0.382	0.458	0.051	0.260	0.184	0.241	0.043	0.070	1.714	0.646	0.151	0.619	0.884	0.100	0.170	0.102	0.163	0.216	0.097	0.181	1.503	0.503	0.093	0.127	3.161	3.490	1.779	7.520	0.246	0.071	0.136	0.193	0.061	0.057	1.177	1.216	0.096	0.090		0.013		0.035	0.241	0.151	0.677	4.752	0.316	0.072
284	chr1	45089661	45116809	+	0	NA	intron (NM_001319956, intron 8 of 14)	intron (NM_001319956, intron 8 of 14)	37045	NM_024587	79639	Hs.22157	NM_024587	ENSG00000126106	TMEM53	NET4	transmembrane protein 53	protein-coding	nan	1.076	nan	0.879	0.796	0.502	1.317	0.605	0.125	1.157	0.612	0.440	1.310	0.552	0.105	1.142	1.366	1.132	1.585	2.291	2.214	2.260	0.827	1.700	1.804	0.950	nan	nan	2.744	1.617	1.556	1.161	nan	1.009	0.898	1.850	3.468	1.357	0.760	1.320	1.818	0.292	0.640	1.317	0.440	0.922	1.622	0.287	1.520
4151	chr19	55948837	55973199	+	0	NA	Intergenic	Intergenic	-6788	NM_001145176	729956	Hs.6664	NM_175908	ENSG00000187902	SHISA7	-	shisa family member 7	protein-coding	0.978	0.874	0.793	0.713	0.979	0.565	1.619	0.169	0.103	0.288	0.160	0.431	1.452	0.401	0.107	0.750	0.931	0.331	0.555	1.518	1.101	3.064	1.122	0.271	0.306	0.482	0.763	0.689	1.131	0.799	0.655	1.036	1.200	1.393	0.959	0.630	1.019	0.996	0.596	2.392	2.584	0.239	0.251	1.619	0.431	0.271	0.336	1.200	0.187
3870	chr18	61281735	61287241	+	0	NA	Intergenic	MER67C|LTR|ERV1	27065	NM_175041	6318	Hs.123035	NM_002974	ENSG00000206073	SERPINB4	LEUPIN|PI11|SCCA-2|SCCA1|SCCA2	serpin family B member 4	protein-coding	0.803	0.979	0.787	0.547	0.373	0.225	0.466	0.081	0.029	0.288	0.161	0.022	0.963	0.040	0.066	0.472	0.366	0.283	0.271	0.990	1.085	0.453	0.243	0.384	nan	0.168	nan	1.674	2.057	1.826	1.464	0.043	0.157	7.790	11.982	0.826	2.133	4.405	1.681	0.715	0.582	2.706	0.203	0.466	0.022	0.089	0.057		0.067
903	chr1	228269155	228272209	+	0	NA	promoter-TSS (NM_001024228)	promoter-TSS (NM_001024228)	-169	NM_001024227	375	Hs.286221	NM_001658	ENSG00000143761	ARF1	-	ADP ribosylation factor 1	protein-coding	9.079	7.140	10.770	8.423	10.572	5.587	8.500	5.355	0.786	7.239	2.262	7.459	11.731	5.266	0.146	8.000	7.962	14.761	21.572	13.159	12.060	10.631	6.026	26.119	27.140	5.003	6.358	7.742	14.170	9.336	11.143	3.506	7.505	7.826	10.820	12.774	9.966	3.606	2.290	4.742	5.864	1.245	5.317	8.500	7.459	1.301	3.865	1.246	3.250
5397	chr3	71074869	71116153	+	0	NA	intron (NM_032682, intron 10 of 20)	intron (NM_032682, intron 10 of 20)	18563	NM_001244813	27086	Hs.59368	NM_032682	ENSG00000114861	FOXP1	12CC4|HSPC215|MFH|QRF1|hFKH1B	forkhead box P1	protein-coding	0.879	0.628	1.591	0.891	0.751	0.369	0.319	0.345	0.039	0.672	0.351	0.642	1.033	0.031	0.067	0.301	0.226	1.937	nan	0.669	0.713	0.937	0.500	0.177	0.189	0.443	0.688	0.925	1.755	1.153	0.987	0.184	0.438	0.837	1.621	0.218	nan	0.835	0.522	0.038	0.360	0.188	0.235	0.319	0.642	0.087	0.644	0.110	0.117
3927	chr19	570720	574263	+	0	NA	promoter-TSS (NM_001322243)	promoter-TSS (NM_001322243)	37	NM_001322243	682	Hs.501293	NM_001728	ENSG00000172270	BSG	5F7|CD147|EMMPRIN|OK|TCSF	basigin (Ok blood group)	protein-coding	6.774	4.723	5.986	6.492	8.300	3.793	7.100	2.605	0.498	3.328	1.988	8.416	20.574	8.747	0.244	4.159	4.225	9.143	13.514	9.542	8.389	6.331	1.737	8.978	9.445	7.395	9.935	8.421	nan	10.148	10.847	1.963	4.680	10.592	9.665	5.967	6.346	4.715	2.877	8.312	8.353	1.864	3.066	7.100	8.416	2.163	4.193	2.281	2.974
8286	chr9	130828716	130836516	+	0	NA	intron (NM_001330988, intron 1 of 10)	AluY|SINE|Alu	2137	NM_001330988	114789	Hs.5476	NM_052901	ENSG00000148339	SLC25A25	MCSC|PCSCL|SCAMC-2	solute carrier family 25 member 25	protein-coding	nan	3.366	3.471	5.267	3.223	1.835	3.507	3.302	0.519	2.077	0.925	3.249	9.789	1.405	0.075	2.248	2.189	3.395	5.733	5.489	5.481	nan	2.477	6.060	6.595	2.336	3.094	6.070	8.093	5.650	5.118	1.020	2.081	4.505	6.106	2.358	3.470	2.959	1.224	4.259	2.520	1.611	2.134	3.507	3.249	1.910	3.076	0.786	0.967
5504	chr3	119886428	119901822	+	0	NA	intron (NM_153002, intron 7 of 8)	intron (NM_153002, intron 7 of 8)	69017	NM_001168271	165829	Hs.333358	NM_153002	ENSG00000175697	GPR156	GABABL|PGR28	G protein-coupled receptor 156	protein-coding	2.046	nan	1.533	0.904	0.894	0.481	0.242	0.939	0.136	0.418	0.229	0.843	0.825	0.055	0.059	0.362	0.268	0.233	0.378	1.015	nan	6.436	2.407	0.321	0.409	nan	0.951	3.383	3.412	2.612	3.250	0.224	0.300	0.674	0.448	0.399	0.633	2.361	1.527	2.199	0.620	0.056	0.814	0.242	0.843	0.403	0.322	0.090	0.199
7094	chr6	164569362	164575183	+	0	NA	Intergenic	Intergenic	-479756	NR_134620	102724152	Hs.738183	NR_134620		LOC102724152	-	uncharacterized LOC102724152	ncRNA	0.696	nan	2.144	1.660	0.291	0.329	0.285	0.068	0.110	1.100	0.518	2.095	1.828	0.019	0.120	0.373	0.347	0.437	3.145	1.314	1.186	12.835	7.673	0.080	0.124	0.183	0.206	0.370	0.460	nan	0.281	0.095	0.125	2.607	2.907	0.215	0.294	1.373	0.866	0.029	0.108	0.421		0.285	2.095		0.228		0.022
4411	chr2	77736006	77751226	+	0	NA	TTS (NM_001282928)	TTS (NM_001282928)	5943	NM_001282928	80059	Hs.285782	NM_024993	ENSG00000176204	LRRTM4	-	leucine rich repeat transmembrane neuronal 4	protein-coding	nan	nan	0.560	0.113	0.150	0.084	0.243	0.062	0.042	0.052	0.099	0.095	0.607	0.056	0.161	0.339	0.173	0.205	0.330	0.385	0.490	0.462	0.149	0.249	0.237	0.131	0.266	0.360	0.419	0.404	0.171	0.057	0.221	0.041	0.039	0.211	0.286	nan	0.417	5.955	0.030	0.013	0.059	0.243	0.095	0.019	0.033	0.007	0.008
3891	chr18	71934987	71960434	+	0	NA	intron (NM_148923, intron 1 of 4)	AluJb|SINE|Alu	11541	NM_001914	1528	Hs.465413	NM_001914	ENSG00000166347	CYB5A	CYB5|MCB5	cytochrome b5 type A	protein-coding	nan	nan	3.254	3.198	0.467	0.315	1.272	0.209	0.063	0.633	0.377	0.980	1.737	0.153	0.081	0.847	1.193	0.681	1.105	2.498	nan	2.328	0.760	1.308	1.283	0.349	0.542	3.323	nan	0.860	0.681	0.367	0.745	1.968	1.532	0.317	0.501	1.904	1.079	0.421	0.283	0.316	0.309	1.272	0.980	0.077	0.694	0.183	0.121
808	chr1	204532492	204544559	+	0	NA	Intergenic	Intergenic	53018	NM_001278517	4194	Hs.497492	NM_002393	ENSG00000198625	MDM4	HDMX|MDMX|MRP1	MDM4, p53 regulator	protein-coding	1.245	1.426	3.941	0.247	0.918	0.345	0.471	0.174	0.147	0.198	0.277	0.461	1.324	0.090	0.128	0.787	0.634	10.799	5.499	1.138	1.215	1.574	0.436	nan	nan	0.766	1.199	1.611	1.286	0.646	0.390	0.593	0.709	0.576	0.629	0.906	3.430	0.800	0.559	0.301	0.375	0.116	0.045	0.471	0.461	0.048	0.409	0.238	0.588
845	chr1	211870424	211888259	+	0	NA	Intergenic	Intergenic	-30369	NM_001204182	4751	Hs.153704	NM_002497	ENSG00000117650	NEK2	HsPK21|NEK2A|NLK1|PPP1R111|RP67	NIMA related kinase 2	protein-coding	1.426	2.293	1.621	2.545	0.562	0.323	0.250	0.105	0.134	1.152	0.505	0.888	nan	0.091	0.103	0.694	0.921	0.791	1.813	3.418	3.105	nan	0.575	0.998	1.000	0.357	nan	4.626	4.453	0.600	0.327	0.236	0.242	1.441	2.006	0.828	2.300	2.251	1.273	2.258	0.772	0.271	0.324	0.250	0.888	0.894	0.529	0.045	0.380
5997	chr4	116024745	116044416	+	0	NA	intron (NM_022569, intron 1 of 13)	intron (NM_022569, intron 1 of 13)	452	NM_022569	64579	Hs.591700	NM_022569	ENSG00000138653	NDST4	N-HSST|N-HSST 4|NDST-4|NHSST4	N-deacetylase and N-sulfotransferase 4	protein-coding	0.909	1.431	0.614	0.638	0.491	0.221	0.533	0.129	0.057	1.614	1.036	2.950	1.031	0.022	0.079	0.225	0.177	0.323	0.308	1.107	1.351	1.988	0.486	0.151	0.128	3.568	3.990	1.015	1.106	0.458	0.287	0.234	0.242	1.591	1.404	0.437	0.805	0.972	0.585	0.014	0.104	0.380	0.217	0.533	2.950	0.074	1.347	0.065	0.261
1847	chr12	14817434	14820770	+	0	NA	intron (NM_004963, intron 10 of 26)	LTR9|LTR|ERV1	30417	NM_004963	2984	Hs.524278	NM_004963	ENSG00000070019	GUCY2C	DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR	guanylate cyclase 2C	protein-coding	0.678	0.615	0.718	13.927	0.605	0.239	0.346	0.106	0.098	3.511	2.279	0.216	5.810	0.108	0.270	0.341	0.269	0.414	0.654	nan	0.851	19.255	10.170	0.440	0.456	0.216	0.626	11.733	16.533	0.416	0.168	0.235	0.460	0.100	0.121	0.244	0.444	2.464	1.645	0.067	0.137	0.029	0.551	0.346	0.216		1.546	0.132	0.076
7393	chr7	96122371	96130463	+	0	NA	intron (NM_001201451, intron 1 of 3)	intron (NM_001201451, intron 1 of 3)	6418	NM_001201450	401388	Hs.734935	NM_207503	ENSG00000127922	C7orf76	-	chromosome 7 open reading frame 76	protein-coding	nan	1.268	nan	0.890	6.442	3.381	0.127	0.184	0.099	2.747	1.291	3.398	1.791	0.086	0.171	0.565	0.708	0.478	0.767	1.434	1.693	4.229	1.403	0.290	0.253	0.414	0.801	2.052	1.650	0.474	0.225	0.255	0.487	4.870	6.495	0.394	nan	2.693	1.420	0.172	0.207	1.588	1.073	0.127	3.398	0.199	1.039	0.110	0.137
6788	chr6	45572239	45600802	+	0	NA	Intergenic	Intergenic	196206	NM_001278478	860	Hs.535845	NM_004348	ENSG00000124813	RUNX2	AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA	runt related transcription factor 2	protein-coding	1.680	0.979	0.862	0.153	0.676	0.275	0.286	1.276	0.214	0.120	0.128	0.223	0.454	0.042	0.134	1.903	1.246	3.218	7.945	0.302	0.311	0.120	0.073	1.331	1.325	0.139	0.248	0.561	nan	0.535	0.304	2.210	2.902	0.091	0.116	0.455	1.237	0.737	0.641	0.086	0.062	0.010	0.074	0.286	0.223	0.007	0.057	1.624	0.450
7782	chr8	90994026	90997765	+	0	NA	intron (NM_001024688, intron 1 of 16)	intron (NM_001024688, intron 1 of 16)	1004	NM_002485	4683	Hs.492208	NM_002485	ENSG00000104320	NBN	AT-V1|AT-V2|ATV|NBS|NBS1|P95	nibrin	protein-coding	nan	2.772	3.862	4.331	3.791	2.699	2.019	5.398	0.347	1.033	0.444	2.986	8.539	2.844	0.044	3.547	4.878	5.896	7.946	5.791	5.213	4.162	2.214	11.830	11.809	3.057	3.045	13.718	16.026	3.889	3.937	3.660	6.222	8.240	8.185	4.956	5.281	2.298	1.466	3.534	4.045	1.853	2.028	2.019	2.986	0.752	2.090	1.909	2.384
4952	chr20	40598088	40610064	+	0	NA	Intergenic	Intergenic	-356943	NM_032221	84181	Hs.740645	NM_032221	ENSG00000124177	CHD6	CHD-6|CHD5|RIGB	chromodomain helicase DNA binding protein 6	protein-coding	nan	nan	0.880	0.066	0.208	0.093	0.194	0.068	0.053		0.135	0.078	0.366	0.045	0.090	0.550	0.384	0.150	0.234	0.136	0.220	nan	0.075	0.155	0.166	0.207	0.402	0.247	0.370	nan	1.200	0.232	0.385	0.081	0.081	1.603	4.571	0.258	0.376	0.260	0.112	0.039	0.094	0.194	0.078	0.008	0.055	0.074	3.755
3227	chr17	224479	236608	+	0	NA	Intergenic	Intergenic	-27910	NM_006987	9501	Hs.651925	NM_006987	ENSG00000181031	RPH3AL	NOC2	rabphilin 3A-like (without C2 domains)	protein-coding	1.892	0.592	0.935	0.654	0.922	0.594	0.420	0.062	0.079	0.414	0.169	1.724	0.636	0.542	0.076	0.232	0.142	0.299	0.398	1.325	1.391	0.676	0.332	0.839	0.846	0.155	0.295	2.489	2.362	1.114	1.213	0.297	0.383	0.089	0.070	1.102	2.305	0.308	0.255	0.516	0.739	0.014	0.032	0.420	1.724	0.494	4.582	0.099	0.468
7012	chr6	141784525	141788987	+	0	NA	Intergenic	Intergenic	623180	NM_002511	4829	Hs.552106	NM_002511	ENSG00000135577	NMBR	BB1|BB1R|NMB-R	neuromedin B receptor	protein-coding	nan	3.834	nan	4.358	4.824	2.505	3.518	0.740	0.073	1.887	0.844	5.778	6.089	0.080	0.088	0.444	0.599	0.221	1.063	4.554	7.721	8.030	11.843	0.394	0.482	1.832	2.176	4.487	11.118	7.529	7.100	0.159	0.181	0.985	0.711	0.608	0.543	2.410	1.549	2.636	1.680	0.215	0.358	3.518	5.778	0.629	0.682	0.051	0.027
2960	chr15	76782507	76813957	+	0	NA	intron (NM_001145923, intron 23 of 31)	L1MA3|LINE|L1	-80756	NR_037464	100500855		NR_037464	ENSG00000266449	MIR3713	-	microRNA 3713	ncRNA	1.160	1.040	1.392	0.173	0.348	0.179	0.193	0.159	0.128	0.144	0.183	0.110	0.318	0.042	0.073	0.393	0.295	0.233	0.282	0.356	0.372	0.826	0.159	0.148	0.150	0.575	0.851	0.189	0.236	2.705	1.777	0.162	0.257	0.870	1.095	2.112	5.840	0.812	0.497	0.043	0.062	0.364	0.613	0.193	0.110	0.193	0.023	0.057	2.062
5913	chr4	56622764	56630101	+	0	NA	Intergenic	Intergenic	-59805	NR_003935	644145	Hs.570825	NR_003935		LOC644145	-	exocyst complex component 1 pseudogene	pseudo	nan	0.806	0.838	0.307	1.138	0.414	0.225	2.617	0.350	0.300	0.257	1.307	0.473	0.015	0.045	0.368	0.454	0.462	0.383	1.130	0.892	0.339	0.130	0.723	0.707	6.567	5.203	1.724	1.388	6.143	5.957	0.223	0.293	0.930	1.428	0.554	1.449	2.303	1.706	1.435	2.460	0.299	0.021	0.225	1.307	1.017	0.258	0.170	0.287
4188	chr2	3696656	3717120	+	0	NA	intron (NM_018436, intron 1 of 11)	intron (NM_018436, intron 1 of 11)	1102	NM_018436	55821	Hs.97899	NM_018436	ENSG00000151360	ALLC	ALC	allantoicase	protein-coding	1.139	0.922	0.986	1.177	2.046	1.057	2.572	0.054	0.039	0.756	0.493	2.623	3.573	0.079	0.115	1.536	1.755	0.387	0.666	2.732	2.299	3.145	1.677	0.554	0.661	0.319	0.592	4.187	5.146	1.961	2.234	0.483	0.624	0.921	0.948	0.576	1.172	1.643	1.014	2.093	4.493	0.126	0.648	2.572	2.623	1.013	3.172	0.179	0.175
4522	chr2	141452402	141479177	+	0	NA	intron (NM_018557, intron 37 of 90)	intron (NM_018557, intron 37 of 90)	-121535	NR_106979	102465692		NR_106979	ENSG00000283506	MIR7157	hsa-mir-7157	microRNA 7157	ncRNA	0.781	nan	0.697	0.128	0.355	0.144	0.223	0.073	0.060	0.141	0.155	0.204	0.282	0.028	0.072	0.323	0.201	0.523	0.369	0.255	0.298	0.191	0.054	0.105	0.132	5.248	4.837	0.410	0.346	0.834	0.465	0.130	0.268	0.721	0.797	0.420	0.701	0.311	0.262	0.019	0.027	0.124	0.097	0.223	0.204	0.047	0.049	0.152	0.060
4250	chr2	23291646	23317329	+	0	NA	Intergenic	L1M4b|LINE|L1	-303811	NM_052920	114818	Hs.130593	NM_025067	ENSG00000119771	KLHL29	KBTBD9	kelch like family member 29	protein-coding	0.647	0.529	0.597	0.307	0.418	0.226	0.276	0.090	0.063	0.672	0.374	0.373	0.736	0.030	0.106	0.349	0.312	0.228	0.452	0.634	0.619	3.501	0.768	0.406	0.399	0.313	0.533	0.729	nan	0.363	0.200	0.148	0.243	1.113	0.854	0.212	0.245	1.405	0.862	0.037	0.112	0.190	0.074	0.276	0.373	0.072	0.300	0.050	0.067
1493	chr11	69139849	69157972	+	0	NA	Intergenic	Intergenic	87305	NM_001300924	26579	Hs.523848	NM_138768	ENSG00000172927	MYEOV	OCIM	myeloma overexpressed	protein-coding	nan	0.721	0.435	0.077	0.128	0.142	0.135	0.066	0.062	0.035	0.101	0.099	0.433	0.072	0.104	1.764	1.741	0.167	0.291	0.316	0.340	0.146	0.063	8.598	9.245	0.142	0.303	0.313	0.389	0.496	0.275	0.617	0.997	0.128	0.150	0.102	0.108	0.192	0.299	0.022	0.093	0.010	0.044	0.135	0.099	0.067	0.201	0.354	0.048
5438	chr3	99535468	99557638	+	0	NA	intron (NM_032359, intron 1 of 9)	AluSp|SINE|Alu	-3844	NR_110821	101929357	Hs.741615	NR_110821		HP09053	-	uncharacterized LOC101929357	ncRNA	1.624	1.344	1.314	0.539	0.615	0.362	0.466	0.760	0.246	0.331	0.322	0.570	0.602	0.523	0.080	1.064	0.886	1.064	1.818	0.974	1.093	1.401	0.781	2.145	2.200	1.150	1.765	0.820	1.321	2.442	2.218	0.625	0.948	0.280	0.360	2.157	4.621	1.188	0.885	0.281	0.290	0.034	0.104	0.466	0.570	0.210	0.225	0.214	1.495
5617	chr3	156390395	156411373	+	0	NA	intron (NM_001184718, intron 2 of 5)	intron (NM_001184718, intron 2 of 5)	6431	NM_001184718	25976	Hs.744050	NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding	nan	1.742	1.754	1.208	1.629	0.917	0.659	1.665	0.231	1.809	1.139	1.112	1.700	0.580	0.106	0.969	1.763	1.927	2.882	1.547	1.627	7.746	4.615	3.490	3.223	2.794	nan	1.631	3.636	2.449	2.050	0.682	1.606	1.029	1.198	2.099	3.018	2.045	1.393	0.329	0.564	0.224	0.478	0.659	1.112	0.190	0.372	0.656	1.011
6186	chr5	14554331	14565993	+	0	NA	Intergenic	Intergenic	-21729	NM_019018	54491	Hs.155085	NM_019018	ENSG00000145569	FAM105A	NET20	family with sequence similarity 105 member A	protein-coding	nan	nan	nan	5.972	1.803	0.659	0.968	0.245	0.207	1.570	0.947	5.666	nan	0.000	0.136	0.732	1.436	0.171	0.184	6.097	7.697	3.322	1.344	0.101	0.130	nan	1.297	5.084	6.037	3.624	3.928	0.156	0.268	2.117	2.192	1.221	nan	4.931	2.632	0.124	0.379	0.465	1.144	0.968	5.666	0.658	1.905	0.025	0.591
2397	chr13	100307365	100357498	+	0	NA	intron (NM_206808, intron 1 of 8)	intron (NM_206808, intron 1 of 8)	10794	NR_046526	100874063	Hs.577064	NR_046526	ENSG00000227659	CLYBL-AS2	-	CLYBL antisense RNA 2	ncRNA	1.364	2.286	1.586	1.216	0.352	0.181	7.632	0.259	0.164	0.931	0.673	0.227	0.688	0.222	0.092	0.727	0.499	0.213	0.240	1.214	1.165	2.109	0.641	0.199	0.149	1.057	nan	0.719	0.919	0.958	0.869	0.247	0.329	4.874	5.360	0.419	nan	0.838	0.492	0.271	0.284	1.495	0.413	7.632	0.227	0.507	0.172	0.061	0.095
6105	chr4	185721688	185748121	+	0	NA	intron (NM_001286711, intron 1 of 19)	intron (NM_001286711, intron 1 of 19)	-1491	NM_001286708	2180	Hs.406678	NM_001995	ENSG00000151726	ACSL1	ACS1|FACL1|FACL2|LACS|LACS1|LACS2	acyl-CoA synthetase long-chain family member 1	protein-coding	nan	1.639	nan	0.955	0.547	0.299	0.212	0.105	0.030	0.255	0.197	0.969	1.816	0.111	0.061	0.821	1.227	4.030	4.996	0.960	0.806	0.667	0.262	0.287	0.290	0.370	0.630	1.429	1.688	0.986	0.880	0.424	0.646	0.092	0.086	0.737	1.449	0.492	0.487	0.639	1.351	0.018	0.374	0.212	0.969	0.137	0.399	0.479	0.295
4298	chr2	39887097	39896584	+	0	NA	promoter-TSS (NM_001167959)	promoter-TSS (NM_001167959)	-798	NM_001167959	130733	Hs.40808	NM_152390	ENSG00000152154	TMEM178A	TMEM178	transmembrane protein 178A	protein-coding	1.608	nan	nan	0.603	1.418	0.847	0.723	0.197	0.067	0.467	0.214	1.863	1.620	0.263	0.122	0.471	0.481	0.387	0.429	2.167	1.770	8.047	2.985	1.128	nan	1.417	2.085	0.524	0.846	nan	1.257	0.317	0.536	3.652	2.853	0.396	0.612	0.983	0.663	0.169	0.102	0.712	0.520	0.723	1.863	0.632	0.053	0.072	0.156
6412	chr5	115693535	115724980	+	0	NA	intron (NR_104675, intron 1 of 2)	intron (NR_104675, intron 1 of 2)	1010	NR_104675	101927190	Hs.639849	NR_104675		LOC101927190	-	uncharacterized LOC101927190	ncRNA	1.705	1.267	1.053	0.124	0.766	0.444	0.482	0.187	0.056	0.205	0.175	0.178	1.529	0.076	0.105	0.304	0.320	0.481	1.372	0.338	0.379	1.493	0.417	0.152	0.139	1.479	nan	0.418	0.397	1.155	1.118	0.181	0.243	2.684	3.049	0.256	0.432	1.877	0.872	2.069	0.069	0.969	0.355	0.482	0.178	0.160	0.657	0.094	0.145
7913	chr8	125482630	125490888	+	0	NA	promoter-TSS (NM_007218)	promoter-TSS (NM_007218)	45	NR_108047	101927612	Hs.633137	NR_108047	ENSG00000245149	RNF139-AS1	-	RNF139 antisense RNA 1 (head to head)	ncRNA	nan	nan	nan	5.312	5.000	2.717	2.061	2.382	0.364	1.403	0.688	3.916	nan	1.785	0.111	3.494	4.030	4.023	5.899	9.648	7.443	9.250	4.121	nan	26.591	3.462	3.672	3.231	6.098	5.625	6.782	4.110	6.713	5.460	5.761	5.279	5.872	2.835	1.294	3.284	3.671	0.863	2.208	2.061	3.916	0.692	2.711	2.376	1.597
7081	chr6	159282308	159294737	+	0	NA	Intergenic	Intergenic	-2377	NM_001302841	100130967	Hs.32804	NM_001195032		C6orf99	yR211F11.1	chromosome 6 open reading frame 99	protein-coding	nan	1.732	2.390	2.084	1.947	0.928	2.334	0.613	0.104	0.709	0.195	2.301	3.433	1.084	0.105	2.750	2.750	2.698	4.277	3.387	nan	9.481	7.903	8.198	8.908	0.828	1.205	2.594	3.993	4.462	4.241	0.814	1.346	3.384	3.302	2.868	nan	2.069	1.234	1.935	2.027	0.330	0.751	2.334	2.301	0.727	1.018	0.321	1.237
1715	chr11	125494989	125498254	+	0	NA	intron (NM_001330428, intron 1 of 11)	intron (NM_001330428, intron 1 of 11)	370	NM_001274	1111	Hs.24529	NM_001274	ENSG00000149554	CHEK1	CHK1	checkpoint kinase 1	protein-coding	4.301	3.832	3.510	5.008	4.125	2.119	3.713	0.862	0.098	1.576	1.625	4.925	12.241	5.897	0.201	8.390	8.627	4.892	7.527	7.499	7.244	10.535	5.625	13.780	14.517	6.977	8.553	9.944	13.848	7.782	9.364	12.075	19.050	7.740	9.301	7.454	6.829	3.695	2.085	6.016	2.945	0.962	3.671	3.713	4.925	0.950	2.920	4.628	2.024
1613	chr11	106884893	106890832	+	0	NA	intron (NM_001256424, intron 1 of 8)	intron (NM_001256424, intron 1 of 8)	1309	NM_000855	2977	Hs.24321	NM_000855	ENSG00000152402	GUCY1A2	GC-SA2|GUC1A2	guanylate cyclase 1 soluble subunit alpha 2	protein-coding	0.691	0.823	2.158	1.357	0.319	0.162	0.274	0.038	0.107	0.501	0.223	0.106	0.795	0.220	0.066	13.386	18.615	1.098	1.611	0.642	0.513	0.545	0.297	1.583	1.602	1.688	2.296	1.494	1.750	3.168	3.391	4.493	7.955	2.070	1.155	2.511	2.227	0.318	0.335	0.112	1.512	0.547	4.804	0.274	0.106	0.148	1.147	1.678	1.602
4247	chr2	20547174	20558069	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-2010	NM_015317	23369	Hs.467824	NM_015317	ENSG00000055917	PUM2	PUMH2|PUML2	pumilio RNA binding family member 2	protein-coding	3.817	1.812	3.176	3.286	3.307	1.808	2.731	1.556	0.252	2.650	1.057	3.486	8.878	2.207	0.146	3.356	2.750	3.742	4.836	5.762	5.628	4.725	2.031	6.834	7.030	4.863	5.783	5.125	nan	4.306	4.359	1.807	3.476	3.839	3.785	6.091	7.325	2.902	1.639	4.950	4.466	0.860	1.947	2.731	3.486	2.422	1.861	1.484	2.783
5064	chr21	17904931	17911002	+	0	NA	promoter-TSS (NR_136547)	promoter-TSS (NR_136547)	74	NR_136547	388815	Hs.473394	NR_027790		MIR99AHG	C21orf34|C21orf35|LINC00478|MONC	mir-99a-let-7c cluster host gene	ncRNA	1.417	2.119	9.275	0.154	0.692	0.397	0.021	0.173		0.758	0.534	1.913	3.035	1.596	0.123	0.556	0.424	2.593	4.255	0.674	0.873	0.097	0.020	0.201	0.285	2.432	3.124	0.081	0.119	11.198	12.494	2.010	2.514	0.076	0.117	0.346	0.796	1.294	0.729	3.131	0.396	0.016	0.079	0.021	1.913			1.282	0.089
6675	chr6	26097557	26110102	+	0	NA	promoter-TSS (NM_003542)	promoter-TSS (NM_003542)	-347	NM_003542	8364	Hs.46423	NM_003542	ENSG00000197061	HIST1H4C	H4/g|H4FG|dJ221C16.1	histone cluster 1 H4 family member c	protein-coding	2.088	1.068	nan	1.105	1.083	0.525	0.234	0.653	0.205	0.500	0.247	1.074	nan	1.460	0.155	1.795	2.096	1.415	nan	1.209	1.082	6.041	1.927	2.518	2.569	0.458	0.634	1.673	1.886	1.105	1.055	0.429	0.667	1.209	1.381	1.978	3.419	0.829	0.563	0.075	1.041	0.136	0.624	0.234	1.074	0.368	0.627	0.253	0.657
1406	chr11	45937731	45957264	+	0	NA	intron (NM_152312, intron 6 of 13)	intron (NM_152312, intron 6 of 13)	3270	NM_001300721	120071	Hs.86543	NM_152312	ENSG00000165905	LARGE2	GYLTL1B|PP5656	LARGE xylosyl- and glucuronyltransferase 2	protein-coding	nan	2.000	1.631	2.417	1.446	0.648	0.964	0.325	0.082	1.569	1.028	1.859	2.897	0.631	0.096	3.599	4.019	1.604	2.235	4.455	3.875	5.135	1.403	2.055	2.040	0.992	1.294	1.624	1.924	1.366	1.216	1.632	2.527	1.179	1.154	1.257	nan	2.115	1.181	1.472	2.363	0.209	0.583	0.964	1.859	0.423	1.406	0.930	0.353
1104	chr10	39137785	39154451	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	156391	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo	2.926	3.877	2.912	0.433	1.270	0.646	0.775	0.775	3.790	0.447	1.228	0.439	1.320	0.175	1.011	1.419	0.618	0.541	nan	1.090	1.776	0.488	0.335	0.585	0.638	1.124	1.527	0.773	0.802	1.452	0.452	0.427	0.797	0.544	0.797	0.572	0.996	0.572	0.892	0.108	0.406	0.291	0.175	0.775	0.439	0.070	0.182	0.166	0.264
7120	chr7	1014107	1033505	+	0	NA	intron (NM_017781, intron 1 of 8)	intron (NM_017781, intron 1 of 8)	971	NM_017781	54905	Hs.272795	NM_017781	ENSG00000073067	CYP2W1	-	cytochrome P450 family 2 subfamily W member 1	protein-coding	2.349	1.034	5.916	0.498	0.582	0.346	0.792	0.444	0.157	0.512	0.290	1.010	nan	0.935	0.129	1.686	2.717	0.683	nan	1.184	1.139	nan	0.456	2.140	2.089	1.178	1.601	nan	0.448	1.078	1.477	1.157	1.320	0.523	0.614	0.850	1.467	0.800	0.548	0.416	0.326	0.074	0.262	0.792	1.010	0.935	0.813	0.896	0.611
5092	chr21	33232924	33250531	+	0	NA	Intergenic	Intergenic	-3901	NM_014586	30811	Hs.109437	NM_014586	ENSG00000142149	HUNK	-	hormonally up-regulated Neu-associated kinase	protein-coding	2.670	1.150	4.445	0.922	1.394	0.708	1.296	0.063	0.081	0.176	0.188	0.843	6.518	0.611	0.091	1.323	1.978	1.545	2.026	2.748	2.361	0.457	0.147	0.409	0.429	1.022	1.594	3.742	4.688	2.786	3.380	0.565	1.120	0.319	0.221	0.992	1.345	nan	0.717	0.797	1.831	0.135	1.439	1.296	0.843	0.308	0.138	0.242	0.371
7534	chr7	149569857	149577826	+	0	NA	intron (NM_001100592, intron 2 of 2)	Charlie2a|DNA|hAT-Charlie	-2890	NR_027040	401431	Hs.556998	NM_001008745	ENSG00000204934	ATP6V0E2-AS1	-	ATP6V0E2 antisense RNA 1	ncRNA	3.601	1.435	4.520	1.525	1.617	0.768	1.994	0.609	0.082	1.563	0.832	2.305	3.669	0.913	0.104	3.038	4.565	4.017	3.664	3.208	2.339	3.259	1.283	2.372	2.483	2.613	3.696	2.125	3.131	4.015	4.467	1.905	3.111	2.340	1.789	1.629	2.127	2.459	nan	1.446	2.063	0.364	0.947	1.994	2.305	1.886	1.051	1.123	0.656
1905	chr12	31798043	31814171	+	0	NA	intron (NM_001135864, intron 1 of 3)	AluSx3|SINE|Alu	6013	NM_001135864	254013	Hs.740628	NM_173802	ENSG00000139160	ETFBKMT	C12orf72|ETFB-KMT|METTL20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	1.878	nan	1.868	1.104	1.040	0.538	0.661	0.232	0.249	0.930	0.530	1.221	2.046	1.008	0.161	2.216	2.260	0.912	1.406	2.091	2.089	3.959	1.352	6.525	6.996	0.811	0.997	1.624	2.999	0.877	0.617	1.185	1.741	8.598	10.156	2.814	4.167	1.819	1.305	0.746	0.727	1.686	0.549	0.661	1.221	0.188	1.694	0.854	1.201
3203	chr16	85333967	85350420	+	0	NA	Intergenic	Intergenic	-2262	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA	nan	1.077	3.155	1.145	0.637	0.340	2.412	0.204	0.093	0.143	0.092	0.939	1.243	0.178	0.086	2.775	4.768	0.139	0.337	2.088	1.920	0.672	0.281	0.555	0.541	0.923	1.209	3.641	3.365	4.830	4.168	0.583	0.609	0.252	0.260	0.882	2.298	0.920	0.642	2.478	0.613	0.081	0.097	2.412	0.939	1.182	1.219	0.276	1.113
8217	chr9	98075012	98080850	+	0	NA	intron (NM_000136, intron 1 of 14)	intron (NM_000136, intron 1 of 14)	1605	NM_001243743	2176	Hs.494529	NM_000136	ENSG00000158169	FANCC	FA3|FAC|FACC	Fanconi anemia complementation group C	protein-coding	3.867	3.640	4.083	6.235	4.594	2.914	3.745	1.817	0.246	1.583	0.975	5.390	6.966	4.208	0.156	3.173	3.422	7.570	10.226	10.218	8.935	4.303	2.404	5.734	5.563	3.593	3.622	6.246	10.245	9.553	9.272	2.018	3.303	9.013	12.065	5.309	4.871	3.452	1.714	5.179	1.749	2.180	2.219	3.745	5.390	1.559	2.019	1.490	1.606
2472	chr13	114608704	114623414	+	0	NA	intron (NM_001278674, intron 3 of 7)	L1MDa|LINE|L1	15905	NR_047495	100861555	Hs.353773	NR_047495	ENSG00000260910	LINC00565	-	long intergenic non-protein coding RNA 565	ncRNA	0.732	nan	0.653	0.458	0.200	0.130	0.600	0.284	0.121	0.187	0.134	0.317	1.629	0.030	0.077	1.033	1.503	0.108	0.173	0.715	0.887	1.463	0.423	0.100	0.125	0.111	0.189	1.415	1.399	0.321	0.187	0.418	0.562	0.266	0.213	0.171	0.208	0.130	0.108	3.857	0.784	0.058	0.092	0.600	0.317	0.250	0.372	0.161	0.065
6597	chr6	6657896	6666749	+	0	NA	Intergenic	Intergenic	-39263	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA	1.679	0.831	5.981	0.533	1.178	0.622	0.910	0.052	0.184	0.289	0.205	2.068	0.363	0.049	0.121	0.916	1.292	0.580	0.734	2.711	2.467	1.386	0.358	0.497	0.427	0.886	1.955	0.506	0.766	3.774	4.466	0.365	0.480	2.945	2.896	1.057	1.193	1.519	1.132	0.114	0.228	0.658	5.876	0.910	2.068	2.005	0.080	0.227	0.069
821	chr1	205710421	205720676	+	0	NA	intron (NM_022731, intron 1 of 6)	intron (NM_022731, intron 1 of 6)	3824	NM_022731	64710	Hs.213061	NM_022731	ENSG00000069275	NUCKS1	JC7|NUCKS	nuclear casein kinase and cyclin dependent kinase substrate 1	protein-coding	2.876	2.953	3.512	1.664	4.168	2.327	3.098	1.942	0.125	1.884	0.851	2.614	5.786	2.905	0.151	2.919	2.960	5.754	7.694	4.986	5.409	3.405	2.768	nan	nan	2.317	2.959	3.478	5.144	3.530	3.224	1.333	2.323	2.134	2.839	3.864	3.681	1.636	0.797	1.746	3.515	0.575	1.350	3.098	2.614	0.529	1.120	0.744	1.413
696	chr1	181353244	181374105	+	0	NA	Intergenic	L2a|LINE|L2	-89012	NM_001205293	777	Hs.437444	NM_000721	ENSG00000198216	CACNA1E	BII|CACH6|CACNL1A6|Cav2.3|gm139	calcium voltage-gated channel subunit alpha1 E	protein-coding	nan	nan	1.125	0.404	1.849	0.791	0.910	0.130	0.147	0.488	0.322	0.072	0.887	0.067	0.120	0.393	0.208	0.424	1.095	1.200	nan	4.023	1.555	nan	0.204	0.341	0.614	0.569	0.520	0.478	0.288	0.292	0.414	2.282	1.802	0.291	nan	3.158	1.774	0.368	1.366	0.502	0.076	0.910	0.072	0.136	0.074	0.057	0.078
6886	chr6	105760867	105780937	+	0	NA	intron (NM_002726, intron 10 of 14)	intron (NM_002726, intron 10 of 14)	80097	NM_002726	5550	Hs.436564	NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding	1.973	nan	nan	0.807	5.258	2.801	1.843	0.228	0.105	0.423	0.265	0.482	0.623	0.075	0.149	1.234	1.591	1.372	2.807	0.575	nan	0.896	0.325	0.356	0.380	0.833	1.248	1.473	1.496	nan	1.164	0.401	0.728	1.673	2.842	0.231	0.600	1.544	0.801	0.337	0.513	0.413	0.577	1.843	0.482	0.591	0.076	0.143	0.104
1721	chr11	126666607	126702110	+	0	NA	intron (NM_032531, intron 1 of 16)	L1PA11|LINE|L1	-126284	NR_046986	100874251	Hs.319053	NR_046986	ENSG00000254960	KIRREL3-AS2	-	KIRREL3 antisense RNA 2	ncRNA	0.644	1.226	0.740	1.433	0.679	0.253	0.617	0.040	0.058	0.548	0.281	1.652	2.081	0.051	0.092	0.635	0.595	0.181	0.273	1.938	2.368	2.036	0.524	0.126	0.128	0.195	0.372	2.209	2.083	0.458	0.283	0.645	1.024	0.319	0.388	0.351	nan	2.463	1.416	0.781	0.685	0.051	0.152	0.617	1.652	0.136	0.042	0.466	0.195
6013	chr4	124519106	124524168	+	0	NA	Intergenic	Intergenic	-52303	NR_027105	285419	Hs.535763	NR_027105	ENSG00000249464	LINC01091	-	long intergenic non-protein coding RNA 1091	ncRNA	0.702	0.784	nan	0.450	1.465	0.884	0.465	0.896	0.158	0.307	0.098	0.571	0.841	0.042	0.063	2.960	2.444	9.007	10.893	0.355	0.425	3.107	1.083	2.818	2.656	0.132	0.131	0.434	0.447	0.253	0.091	2.739	2.534	1.466	1.744	0.271	0.429	0.593	0.495	0.033	0.035	0.149	0.139	0.465	0.571	0.035	0.140	2.166	0.145
3376	chr17	36566978	36585898	+	0	NA	Intergenic	Intergenic	-8282	NM_001199417	57636	Hs.374446	NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding	nan	2.310	0.955	1.200	5.078	2.868	1.875	0.600	0.169	1.797	0.881	3.625	4.523	1.255	0.091	4.357	4.801	0.560	0.853	nan	4.909	4.766	2.268	6.234	6.982	1.078	1.324	5.970	6.184	nan	2.935	2.638	2.787	1.618	1.570	1.994	3.857	2.162	1.066	3.606	3.336	0.291	0.941	1.875	3.625	0.779	1.503	0.864	1.014
1431	chr11	59883409	59896693	+	0	NA	Intergenic	MER4A|LTR|ERV1	33914	NM_001256916	2206	Hs.386748	NM_000139	ENSG00000149534	MS4A2	APY|ATOPY|FCER1B|FCERI|IGEL|IGER|IGHER|MS4A1	membrane spanning 4-domains A2	protein-coding	0.688	0.712	0.589	0.083	0.225	0.146	0.116	0.088	0.121	0.048	0.143	0.045	0.239	0.065	0.161	0.310	0.242	0.285	0.746	0.202	0.299	0.126	0.105	0.129	0.146	0.615	0.731	0.213	0.198	0.377	0.144	0.167	0.358	0.054	0.115	0.447	1.320	0.297	0.330	0.011	0.033	0.015	0.036	0.116	0.045	0.007	0.035	0.209	3.795
1489	chr11	68079158	68116054	+	0	NA	intron (NM_001291902, intron 1 of 22)	(TG)n|Simple_repeat|Simple_repeat	17529	NM_002335	4041	Hs.6347	NM_002335	ENSG00000162337	LRP5	BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP7|OPPG|OPS|OPTA1|VBCH2	LDL receptor related protein 5	protein-coding	nan	0.764	1.693	0.943	0.541	0.321	0.472	0.254	0.134	0.318	0.149	0.957	1.147	0.488	0.129	4.476	5.512	1.581	3.325	1.409	1.231	1.203	0.323	2.291	2.161	0.867	1.334	2.610	3.197	0.658	0.715	3.636	5.707	0.480	0.618	0.539	0.661	0.560	0.483	0.582	0.063	0.047	0.344	0.472	0.957	0.079	0.970	3.110	0.178
7997	chr8	144896314	144912663	+	0	NA	intron (NM_001271097, intron 1 of 9)	intron (NM_001271097, intron 1 of 9)	6791	NM_001271100	22827	Hs.521924	NM_014281	ENSG00000179950	PUF60	FIR|RoBPI|SIAHBP1|VRJS	poly(U) binding splicing factor 60	protein-coding	3.658	1.418	nan	2.619	2.376	1.482	2.427	0.977	0.187	0.521	0.327	2.820	5.652	1.174	0.087	2.396	3.729	2.456	3.392	nan	4.850	nan	1.108	4.277	4.509	1.186	1.978	1.861	2.610	1.959	2.061	1.912	3.326	1.392	1.608	2.244	2.288	1.652	0.875	3.672	1.965	0.342	0.880	2.427	2.820	0.330	1.619	0.586	0.734
3050	chr16	12318589	12358541	+	0	NA	intron (NM_032167, intron 14 of 20)	intron (NM_032167, intron 14 of 20)	267974	NM_032167	92017	Hs.458401	NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding	1.105	0.878	nan	1.816	5.295	2.719	0.270	0.158	0.077	0.315	0.124	3.048	7.022	0.062	0.076	1.258	0.821	0.175	0.163	0.863	0.956	3.678	1.164	1.772	1.778	0.778	1.493	2.871	2.800	nan	0.400	2.138	2.957	0.441	0.564	0.279	0.449	3.209	1.309	0.704	0.967	0.074	0.213	0.270	3.048	0.204	0.832	3.126	0.146
4565	chr2	161055466	161115367	+	0	NA	Intergenic	Intergenic	-28592	NM_001282388	3694	Hs.470399	NM_000888	ENSG00000115221	ITGB6	AI1H	integrin subunit beta 6	protein-coding	1.119	1.287	nan	0.124	0.265	0.141	0.387	0.646	0.076	0.084	0.102	0.070	0.602	0.027	0.068	0.493	0.573	1.525	6.734	0.216	0.263	0.086	0.067	0.251	0.261	0.489	0.842	0.422	0.427	0.481	0.250	0.256	0.466	0.044	0.060	0.499	1.084	0.286	0.346	0.031	0.065	0.013	0.062	0.387	0.070	0.131	0.042	0.106	0.252
6752	chr6	38133044	38167157	+	0	NA	intron (NM_001099272, intron 10 of 10)	intron (NM_001099272, intron 10 of 10)	-299272	NR_144472	101929425	Hs.665280	NR_144472		BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA	nan	1.260	nan	0.256	1.011	0.572	2.019	0.114	0.075	0.309	0.308	3.518	0.873	0.098	0.118	0.592	0.607	0.328	nan	nan	3.932	4.609	1.270	0.386	0.400	0.432	0.779	0.665	1.130	0.463	0.346	0.339	0.516	1.168	0.979	0.480	0.983	1.169	0.877	0.606	1.043	0.573	0.215	2.019	3.518	0.137	0.078	0.218	0.423
1805	chr12	7068276	7083091	+	0	NA	TTS (NR_003010)	TTS (NR_003010)	1086	NR_003010	677777	Hs.689636	NR_003010	ENSG00000238795	SCARNA12	U89	small Cajal body-specific RNA 12	ncRNA	3.219	nan	nan	11.413	5.688	2.999	1.986	0.329	0.130	4.280	1.817	4.916	10.184	1.848	0.184	3.000	3.163	5.529	8.279	nan	8.912	17.019	7.002	13.684	14.440	2.458	3.386	6.012	8.622	3.105	3.313	3.440	5.450	8.434	8.891	3.894	nan	2.340	1.267	5.407	4.745	1.655	4.663	1.986	4.916	12.876	1.275	2.279	1.179
3226	chr17	183758	208201	+	0	NA	intron (NM_006987, intron 1 of 9)	MIRb|SINE|MIR	6654	NM_001190413	9501	Hs.651925	NM_006987	ENSG00000181031	RPH3AL	NOC2	rabphilin 3A-like (without C2 domains)	protein-coding	1.256	0.624	0.907	1.061	3.623	1.798	0.575	0.062	0.054	0.749	0.153	3.226	0.817	0.067	0.070	0.268	0.130	0.388	0.571	4.159	4.058	0.625	0.203	1.336	1.273	0.138	0.202	3.605	4.681	1.208	1.131	0.482	0.603	0.041	0.054	1.660	2.517	0.844	0.665	3.104	2.687	0.011	0.029	0.575	3.226	0.513	3.502	0.453	0.935
1727	chr11	128159245	128173442	+	0	NA	Intergenic	Intergenic	225862	NM_005238	2113	Hs.369438	NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding	1.058	1.516	0.940	1.438	3.897	1.986	0.340	0.571	0.022	3.835	1.814	2.253	0.786	0.128	0.131	1.745	3.239	2.994	0.699	3.133	3.192	4.786	3.042	0.227	0.295	0.225	0.303	5.740	9.412	0.471	0.401	1.281	1.791	2.014	1.681	0.236	nan	3.265	1.822	1.557	0.044	0.689	0.094	0.340	2.253	0.014	0.301	0.686	0.373
2922	chr15	67692604	67704585	+	0	NA	non-coding (NR_040051, exon 6 of 6)	non-coding (NR_040051, exon 6 of 6)	114717	NR_040055	100506686	Hs.656245	NR_040051	ENSG00000259673	IQCH-AS1	-	IQCH antisense RNA 1	ncRNA	1.211	1.673	nan	0.190	0.562	0.294	0.563	0.225	0.109	0.144	0.116	0.209	0.538	0.037	0.065	0.278	0.157	0.425	0.286	0.408	0.491	nan	0.576	1.355	1.429	0.572	0.735	0.314	0.360	0.949	0.746	0.212	0.194	1.926	1.949	0.249	0.309	0.821	0.542	0.014	0.112	0.472	3.059	0.563	0.209	0.234	0.033	0.025	0.073
6808	chr6	52283471	52287438	+	0	NA	promoter-TSS (NM_001172420)	promoter-TSS (NM_001172420)	-351	NM_001172420	114327	Hs.403171	NM_018100	ENSG00000096093	EFHC1	EJM1|dJ304B14.2	EF-hand domain containing 1	protein-coding	5.916	3.224	nan	4.988	3.237	1.982	5.394	2.922	0.283	1.888	0.945	4.376	9.123	2.857	0.071	4.185	6.929	2.216	2.441	7.661	6.997	11.602	6.858	6.810	6.663	4.665	6.301	15.182	21.305	5.639	4.915	1.702	2.728	6.980	5.927	8.356	10.111	4.073	2.750	3.855	2.284	0.980	1.015	5.394	4.376	1.634	3.556	0.722	1.639
6094	chr4	182570791	182630982	+	0	NA	Intergenic	Intergenic	464782	NR_125905	90768	Hs.175465	NR_027107		LOC90768	-	uncharacterized LOC90768	ncRNA	nan	0.729	nan	0.047	0.608	0.296	0.120	0.063	0.061	0.201	0.104	0.241	0.137	0.265	0.087	0.231	0.208	0.259	0.317	0.309	0.327	6.876	2.789	0.110	0.116	0.084	0.137	0.726	0.599	0.301	0.134	0.088	0.148	1.461	1.412	0.081	0.145	0.612	0.387	0.255	0.104	0.350	0.099	0.120	0.241	0.011	0.071	0.026	0.027
4967	chr20	45405099	45446446	+	0	NA	Intergenic	Intergenic	87493	NM_030777	81031	Hs.305971	NM_030777	ENSG00000197496	SLC2A10	ATS|GLUT10	solute carrier family 2 member 10	protein-coding	nan	nan	1.367	0.549	1.942	1.007	0.667	0.115	0.085	0.223	0.188	3.210	0.951	0.061	0.097	0.749	1.125	0.182	0.279	2.438	2.724	nan	0.979	0.481	0.509	0.873	1.373	1.975	2.061	nan	6.117	0.538	0.564	1.693	1.443	2.725	6.993	0.922	0.537	0.298	0.448	0.932	0.900	0.667	3.210	1.126	0.760	0.290	3.249
7754	chr8	74221906	74229902	+	0	NA	intron (NR_125388, intron 5 of 5)	intron (NR_125388, intron 5 of 5)	19067	NM_172037	157506	Hs.244940	NM_172037	ENSG00000121039	RDH10	SDR16C4	retinol dehydrogenase 10	protein-coding	2.077	2.126	1.660	1.313	6.075	3.706	0.881	0.291	0.047	0.588	0.438	1.528	1.205	1.679	0.112	0.360	0.295	0.402	0.798	3.053	3.255	2.018	0.572	0.302	0.297	0.695	1.209	2.415	3.180	0.381	0.209	0.417	0.449	3.303	2.581	0.389	0.989	5.622	2.988	0.487	1.980	0.443	0.663	0.881	1.528	0.050	2.046	0.135	0.115
1225	chr10	120114436	120132598	+	0	NA	Intergenic	MER74A|LTR|ERVL	6897	NR_108045	100506126	Hs.69494	NR_108045	ENSG00000232139	LINC00867	-	long intergenic non-protein coding RNA 867	ncRNA	nan	0.788	1.155	0.745	3.393	1.756	0.058	0.089	0.124	0.483	0.424	1.674	0.925	0.042	0.097	0.302	0.334	0.432	0.512	0.525	0.613	5.311	1.726	0.107	0.108	0.167	0.255	0.204	0.206	0.184	0.125	0.153	0.201	2.400	2.608	0.112	0.238	1.675	0.802	0.144	0.054	0.734	0.838	0.058	1.674	0.022	0.313	0.055	0.040
6203	chr5	20358922	20371428	+	0	NA	intron (NM_001291956, intron 1 of 14)	MLT1A|LTR|ERVL-MaLR	210807	NM_001291956	1016	Hs.317632	NM_004934	ENSG00000145526	CDH18	CDH14|CDH14L|CDH24	cadherin 18	protein-coding	0.613	0.959	1.574	0.294	0.182	0.089	0.142	0.180	0.207	0.250	0.218	0.134	0.654	0.017	0.098	0.370	0.240	0.211	0.290	0.396	0.449	0.138	0.102	0.139	0.144	nan	4.797	0.554	0.526	1.502	0.886	0.121	0.158	0.535	0.583	0.182	0.324	nan	0.495	0.014	0.068	0.146	0.019	0.142	0.134	0.235	0.074	0.031	0.129
2909	chr15	64924673	64929565	+	0	NA	intron (NM_015042, intron 2 of 8)	intron (NM_015042, intron 2 of 8)	68361	NM_001301302	4947	Hs.744924	NM_002537	ENSG00000180304	OAZ2	AZ2	ornithine decarboxylase antizyme 2	protein-coding	1.343	1.289	nan	0.249	4.308	2.268	2.238	0.244	0.231	1.027	0.367	1.920	2.205	0.022	0.095	7.099	13.205	4.051	2.764	1.770	1.840	nan	0.980	6.145	5.594	1.215	1.668	0.626	1.136	1.100	0.673	3.074	5.516	11.548	8.717	1.100	1.432	2.256	1.721	0.351	0.144	2.463	1.169	2.238	1.920	0.237	0.113	4.272	0.204
210	chr1	36928606	36938678	+	0	NA	intron (NM_172313, intron 13 of 17)	intron (NM_172313, intron 13 of 17)	-3602	NM_031280	64960	Hs.352839	NM_031280	ENSG00000116898	MRPS15	DC37|MPR-S15|RPMS15|S15mt	mitochondrial ribosomal protein S15	protein-coding	2.611	nan	1.954	3.900	1.739	0.865	4.627	1.185	0.139	0.905	0.401	3.612	3.404	1.194	0.135	3.000	3.847	3.774	3.607	3.844	3.331	nan	2.155	3.734	3.759	1.986	2.745	6.703	8.504	nan	2.680	4.022	5.824	1.183	1.008	2.875	2.926	2.758	nan	1.312	1.851	0.199	2.027	4.627	3.612	0.851	0.974	2.749	0.805
5220	chr22	26429637	26483857	+	0	NA	Intergenic	(CATA)n|Simple_repeat|Simple_repeat	-108693	NM_001184773	23544	Hs.194766	NM_021115	ENSG00000100095	SEZ6L	-	seizure related 6 homolog like	protein-coding	nan	1.086	0.525	0.426	1.692	0.985	0.501	0.060	0.080	0.231	0.131	0.798	2.483	0.030	0.066	0.292	0.242	0.087	nan	0.848	0.814	2.823	1.079	0.124	0.107	1.173	nan	0.663	1.096	0.730	0.452	0.174	0.238	0.568	0.700	0.214	nan	2.838	1.734	0.152	0.216	0.173	0.142	0.501	0.798	0.244	0.069	0.104	0.062
5381	chr3	54802855	54819664	+	0	NA	intron (NM_018398, intron 13 of 37)	intron (NM_018398, intron 13 of 37)	124023	NR_046666	100874237	Hs.570583	NR_046666	ENSG00000243715	CACNA2D3-AS1	-	CACNA2D3 antisense RNA 1	ncRNA	0.534	0.701	nan	0.089	0.242	0.083	0.176	0.200	0.078	0.072	0.084	0.057	0.170	0.032	0.063	0.164	0.125	1.054	5.895	0.230	0.296	0.410	0.165	0.110	0.109	0.232	0.468	0.166	0.189	nan	0.247	0.081	0.149	0.104	0.126	0.165	0.247	0.473	0.382	0.023	0.084	0.017	0.047	0.176	0.057	0.034	0.036	0.023	0.074
6722	chr6	33954113	33963965	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	8789	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275|mir-1275	microRNA 1275	ncRNA	nan	2.343	nan	0.528	1.235	0.668	1.352	0.136	0.098	0.445	0.287	5.810	0.992	0.044	0.089	0.415	0.593	0.157	nan	nan	1.784	2.973	0.866	0.281	0.364	0.291	0.590	2.121	2.484	1.530	1.191	0.609	0.987	2.055	1.794	0.856	2.215	2.092	1.238	0.435	2.499	1.050	0.362	1.352	5.810	0.347	1.115	0.743	0.389
3365	chr17	32893717	32909593	+	0	NA	3' UTR (NM_207454, exon 2 of 2)	3' UTR (NM_207454, exon 2 of 2)	4733	NM_207454	400591	Hs.514090	NM_207454		C17orf102	-	chromosome 17 open reading frame 102	protein-coding	nan	0.639	0.614	0.033	0.411	0.243	1.158	0.095	0.081	0.070	0.026	0.164	2.253	0.103	0.075	0.562	0.480	0.103	0.128	nan	0.717	0.222	0.090	0.120	0.135	0.126	0.221	0.177	0.126	nan	1.362	0.338	0.407	0.894	0.829	1.775	5.673	0.375	0.455	2.300	0.263	0.132	0.039	1.158	0.164	0.567	0.040	0.075	1.556
2702	chr14	79024557	79039054	+	0	NA	intron (NM_004796, intron 1 of 16)	intron (NM_004796, intron 1 of 16)	161731	NM_004796	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding	nan	1.468	0.674	0.152	0.708	0.342	0.477	0.056	0.078	0.463	0.107	0.173	0.849	0.022	0.105	0.355	0.230	0.095	0.181	0.676	0.861	0.715	0.281	0.189	0.182	0.430	0.694	0.926	0.869	1.244	1.111	0.131	0.167	0.500	0.508	0.205	0.388	3.362	2.082	1.244	0.440	0.112	0.282	0.477	0.173	0.120	0.070	0.048	0.060
3196	chr16	84537119	84616357	+	0	NA	Intergenic	AluJb|SINE|Alu	-38450	NM_020947	57707	Hs.288274	NM_020947	ENSG00000140950	TLDC1	KIAA1609	TBC/LysM-associated domain containing 1	protein-coding	nan	1.035	0.778	1.611	5.284	2.839	0.728	0.221	0.145	0.360	0.253	3.280	2.677	0.147	0.081	0.446	0.537	0.245	0.394	1.220	1.262	1.196	0.331	0.452	0.455	0.286	0.511	4.775	4.663	0.820	0.562	0.198	0.270	0.275	0.247	0.750	1.712	1.838	0.928	1.385	0.934	0.065	0.078	0.728	3.280	0.171	0.142	0.046	0.350
1895	chr12	31078484	31094434	+	0	NA	intron (NM_001080509, intron 1 of 7)	intron (NM_001080509, intron 1 of 7)	6621	NM_001080509	441631	Hs.505141	NM_001080509	ENSG00000110900	TSPAN11	VSSW1971	tetraspanin 11	protein-coding	2.062	nan	1.761	2.159	0.411	0.231	0.234	0.071	0.082	0.305	0.177	0.443	2.428	0.102	0.134	0.632	0.453	0.535	0.875	2.316	1.915	3.839	0.955	0.917	1.068	0.144	0.334	1.231	1.580	1.670	2.057	0.308	0.429	5.389	4.957	1.209	1.069	2.332	1.318	2.778	0.980	0.677	0.165	0.234	0.443	0.164	4.026	0.062	0.412
5074	chr21	24127045	24136695	+	0	NA	Intergenic	Intergenic	-319736	NR_106746	102466967		NR_106746	ENSG00000275469	MIR6130	hsa-mir-6130	microRNA 6130	ncRNA	0.565	0.748	0.573	0.083	0.413	0.142	0.518	0.078	0.184	0.212	0.201	0.075	0.372	0.011	0.100	0.464	0.222	0.717	0.866	0.356	0.413	4.789	2.623	0.123	0.097	0.572	0.792	0.227	0.223	0.484	0.146	0.115	0.205	0.926	2.214	0.116	nan	4.431	1.676	0.034	0.055	0.107	0.032	0.518	0.075	0.030	0.063	0.010	0.077
7046	chr6	151616040	151639446	+	0	NA	intron (NM_005100, intron 3 of 4)	intron (NM_005100, intron 3 of 4)	-18923	NM_144497	9590	Hs.371240	NM_005100	ENSG00000131016	AKAP12	AKAP250|SSeCKS	A-kinase anchoring protein 12	protein-coding	nan	0.990	0.810	1.217	0.850	0.355	2.989	0.238	0.110	0.249	0.193	0.901	1.038	0.117	0.124	0.374	0.263	0.342	0.408	1.234	nan	3.113	2.268	0.458	0.514	0.104	0.174	0.558	0.718	1.278	1.210	0.269	0.299	0.239	0.229	0.763	nan	0.694	0.528	0.307	0.611	0.040	0.575	2.989	0.901	0.299	0.052	0.068	0.470
5305	chr22	47422923	47449107	+	0	NA	intron (NR_104292, intron 12 of 13)	AluY|SINE|Alu	-124077	NR_122047	642757	Hs.632786	NR_122047		TBC1D22A-AS1	-	TBC1D22A antisense RNA 1	ncRNA	0.819	0.637	nan	0.188	1.420	0.755	0.917	0.083	0.067	0.360	0.230	4.439	0.725	0.045	0.086	0.440	0.790	0.273	0.455	4.280	4.270	0.759	0.188	0.831	0.714	0.549	0.964	1.133	1.669	1.105	1.209	0.454	0.650	0.272	0.294	0.187	0.298	0.955	0.779	1.788	0.932	0.071	0.092	0.917	4.439	0.317	0.241	0.285	0.082
4465	chr2	110858014	110886375	+	0	NA	intron (NM_005434, intron 1 of 3)	intron (NM_005434, intron 1 of 3)	1949	NM_005434	7851	Hs.185055	NM_005434	ENSG00000144063	MALL	BENE	mal, T-cell differentiation protein like	protein-coding	0.812	nan	0.739	0.250	0.504	0.216	0.539	0.686	0.097	0.158	0.218	0.283	nan	0.057	0.085	0.320	0.280	0.509	1.940	0.519	nan	0.218	0.110	0.403	0.438	1.044	1.593	1.355	1.265	0.269	0.183	0.342	0.490	0.525	0.814	0.163	0.248	0.549	0.406	0.225	0.119	0.134	0.053	0.539	0.283	0.127	1.637	0.230	0.026
3799	chr18	47734845	47746906	+	0	NA	Intergenic	Intergenic	-19424	NM_001080467	4645	Hs.720076	NM_001080467	ENSG00000167306	MYO5B	-	myosin VB	protein-coding	nan	0.750	0.659	0.138	0.177	0.053	0.447	0.067	0.026	0.039	0.034	0.129	0.277	0.036	0.084	3.555	5.170	1.562	0.564	0.562	0.612	0.379	0.158	3.425	3.462	0.188	0.218	0.192	0.211	0.328	0.223	1.897	3.390	0.213	0.533	0.175	nan	1.366	1.261	0.028	0.117	0.008	0.040	0.447	0.129	0.008	0.051	2.486	0.061
4283	chr2	31225402	31237010	+	0	NA	intron (NM_001329097, intron 1 of 12)	AluJr|SINE|Alu	121300	NM_001253827	79623	Hs.468058	NM_024572	ENSG00000158089	GALNT14	GALNT15|GalNac-T10|GalNac-T14	polypeptide N-acetylgalactosaminyltransferase 14	protein-coding	0.886	nan	nan	0.030	0.329	0.229	0.548	0.084	0.083	0.096	0.085	0.072	8.384	0.037	0.107	0.556	0.578	0.402	0.439	0.291	0.382	0.213	0.057	0.923	nan	0.292	0.447	0.592	0.915	nan	0.391	0.209	0.501	0.047	0.109	0.212	0.550	0.650	0.511	0.024	0.100	0.008	0.073	0.548	0.072	0.319	0.009	0.082	0.021
4399	chr2	70331010	70371702	+	0	NA	non-coding (NR_024444, exon 2 of 2)	non-coding (NR_024444, exon 2 of 2)	1092	NR_024444	100133985	Hs.135528	NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA	nan	nan	2.889	2.500	3.755	1.914	2.588	1.622	0.486	0.714	0.382	2.986	3.723	2.156	0.202	2.846	2.549	1.975	3.293	4.204	4.040	3.577	1.923	4.350	4.531	1.842	2.211	4.957	7.200	2.211	1.747	3.365	4.200	1.627	1.796	2.315	3.843	nan	0.788	2.383	2.744	0.280	1.003	2.588	2.986	1.257	1.417	3.177	0.708
2048	chr12	81326581	81335756	+	0	NA	intron (NR_136888, intron 1 of 6)	CpG	526	NR_136887	8825	Hs.144333	NM_004664	ENSG00000111052	LIN7A	LIN-7A|LIN7|MALS-1|TIP-33|VELI1	lin-7 homolog A, crumbs cell polarity complex component	protein-coding	2.867	1.971	1.358	1.096	1.621	0.809	1.547	1.529	0.284	2.308	1.489	1.877	9.625	0.757	0.111	1.482	2.931	2.630	3.388	12.499	10.824	6.003	2.783	0.961	0.879	4.719	5.110	2.811	4.013	3.557	4.014	0.302	0.723	8.028	7.052	1.120	1.624	2.666	1.915	1.222	1.600	2.001	0.777	1.547	1.877	0.983	2.247	0.075	0.431
655	chr1	170499991	170502497	+	0	NA	promoter-TSS (NM_001146039)	promoter-TSS (NM_001146039)	-19	NR_027397	92344	Hs.183702	NM_152281	ENSG00000120370	GORAB	GO|NTKLBP1|SCYL1BP1	golgin, RAB6 interacting	protein-coding	nan	6.362	6.644	6.246	5.046	2.608	8.911	13.389	2.650	3.932	2.474	5.400	13.351	6.587	0.149	5.223	4.774	20.355	26.160	15.536	14.866	11.774	5.097	4.852	4.664	8.524	11.189	11.145	16.202	9.476	9.060	6.322	11.605	5.908	6.954	9.945	13.860	5.670	2.205	3.199	8.531	1.034	2.147	8.911	5.400	0.891	4.218	4.505	3.130
421	chr1	100090500	100140379	+	0	NA	intron (NM_017734, intron 1 of 7)	intron (NM_017734, intron 1 of 7)	4008	NM_017734	54873	Hs.483993	NM_017734	ENSG00000099260	PALMD	C1orf11|PALML	palmdelphin	protein-coding	1.332	nan	nan	0.074	0.229	0.148	0.198	0.866	0.119	0.079	0.089	0.081	0.400	0.100	0.129	0.332	0.197	1.946	1.843	0.447	nan	0.133	0.095	0.275	0.247	1.062	1.330	nan	nan	0.877	0.596	0.163	0.287	0.089	0.097	2.289	nan	0.697	0.666	0.500	0.080	0.029	0.024	0.198	0.081	0.043	0.191	0.068	3.575
5717	chr3	180890377	180895495	+	0	NA	promoter-TSS (NR_075093)	promoter-TSS (NR_075093)	4	NR_075093	347689	Hs.654932	NR_004053		SOX2-OT	NCRNA00043|SOX2OT	SOX2 overlapping transcript	ncRNA	1.070	1.084	0.841	0.220	0.419	0.360	0.099	0.132	0.096	0.242	0.260	0.352	0.621	0.254	0.114	0.271	0.189	0.209	0.273	1.333	1.230	14.867	7.089	0.170	0.183	0.250	0.291	0.261	0.374	0.587	0.355	0.081	0.205	0.124	0.122	0.292	0.547	0.974	0.703	0.021	0.156	0.052	0.753	0.099	0.352		0.039	0.038	0.072
8033	chr9	6679661	6684821	+	0	NA	Intergenic	Intergenic	-36549	NM_000170	2731	Hs.584238	NM_000170	ENSG00000178445	GLDC	GCE|GCSP|HYGN1	glycine decarboxylase	protein-coding	4.464	7.794	5.456	5.938	5.647	2.946	7.078	2.795	0.758	3.201	1.808	4.185	9.441	2.796	0.203	3.443	4.234	4.065	5.671	9.604	8.173	9.850	5.354	9.549	10.420	9.642	10.927	6.957	10.945	7.523	9.196	4.582	5.747	9.628	8.973	6.343	nan	7.190	4.111	5.605	3.570	1.661	3.745	7.078	4.185	1.109	2.207	1.746	1.656
271	chr1	43916511	43922009	+	0	NA	3' UTR (NM_015284, exon 71 of 71)	3' UTR (NM_015284, exon 71 of 71)	400	NM_031207	81888	Hs.709864	NM_031207	ENSG00000178922	HYI	HT036	hydroxypyruvate isomerase (putative)	protein-coding	nan	2.336	nan	2.986	3.651	2.043	2.007	0.820	0.146	2.016	1.252	3.719	5.999	1.020	0.116	0.953	1.809	1.980	3.854	6.280	5.807	2.663	1.002	0.659	0.723	0.249	nan	15.138	16.534	1.198	0.775	1.698	nan	0.976	0.761	0.429	0.883	2.240	1.127	2.282	2.057	0.209	0.977	2.007	3.719	0.458	1.617	0.755	0.663
8240	chr9	112672941	112688214	+	0	NA	intron (NM_001037293, intron 4 of 6)	intron (NM_001037293, intron 4 of 6)	-130301	NM_001004065	11217	Hs.591908	NM_001004065	ENSG00000241978	AKAP2	AKAP-2|AKAPKL|MISP2|PRKA2	A-kinase anchoring protein 2	protein-coding	0.929	0.956	nan	0.449	2.410	1.578	0.210	0.540	0.085	1.356	0.567	1.520	0.473	0.021	0.071	0.180	0.115	0.421	0.430	1.318	1.075	2.928	1.001	0.302	0.288	0.491	0.901	2.079	nan	1.742	1.571	0.161	0.221	2.857	4.179	0.118	0.194	nan	1.576	0.084	1.851	1.230	0.042	0.210	1.520	0.641	0.253	0.071	0.370
3742	chr18	37059819	37076551	+	0	NA	intron (NR_024391, intron 3 of 3)	intron (NR_024391, intron 3 of 3)	133954	NR_030628	100126323		NR_030628	ENSG00000283615	MIR924	MIRN924|hsa-mir-924	microRNA 924	ncRNA	nan	0.765	0.779	0.408	0.412	0.211	0.392	0.067	0.049	0.064	0.155	0.246	0.234	0.057	0.094	0.332	0.202	0.197	0.293	0.730	0.785	5.348	1.328	0.158	0.132	0.326	0.383	nan	0.723	0.276	0.126	0.072	0.208	0.244	0.243	0.220	0.330	1.057	0.917	0.113	0.080	0.034	0.126	0.392	0.246	0.047	0.055	0.012	0.044
3174	chr16	73486423	73492341	+	0	NA	Intergenic	Intergenic	68678	NR_038234	100506172	Hs.434230	NR_038234	ENSG00000258779	LINC01568	-	long intergenic non-protein coding RNA 1568	ncRNA	0.457	0.534	nan	0.162	0.299	0.136	0.237	0.101	0.108	0.053	0.058	0.101	0.230	0.019	0.066	2.071	1.524	7.402	3.728	0.210	0.222	0.046	0.050	0.494	0.427	0.163	0.384	0.193	0.253	0.380	0.117	0.536	0.483	0.048	0.041	0.114	0.154	0.664	0.501	0.009	0.061	0.016	0.014	0.237	0.101	0.017		0.334	0.022
4822	chr20	5121220	5154221	+	0	NA	intron (NM_003818, intron 1 of 12)	intron (NM_003818, intron 1 of 12)	30313	NM_003818	8760	Hs.126857	NM_003818	ENSG00000101290	CDS2	-	CDP-diacylglycerol synthase 2	protein-coding	1.180	1.266	0.915	0.158	0.350	0.235	1.073	0.265	0.088	0.200	0.153	0.131	0.807	0.085	0.100	0.715	0.899	0.364	0.534	0.633	0.797	2.223	0.680	0.414	0.465	0.801	1.321	0.760	0.828	1.082	0.878	0.399	0.546	0.191	0.231	0.542	1.047	0.657	0.639	1.182	4.921	0.041	0.549	1.073	0.131	0.255	0.142	0.081	0.531
7736	chr8	70497356	70519203	+	0	NA	intron (NR_132437, intron 1 of 16)	intron (NR_132437, intron 1 of 16)	3144	NR_132437	23213	Hs.409602	NM_015170	ENSG00000137573	SULF1	SULF-1	sulfatase 1	protein-coding	1.053	0.889	1.070	0.250	0.258	0.161	0.250	0.216	0.096	0.389	0.334	0.110	0.837	0.039	0.067	0.249	0.101	0.275	0.388	0.573	0.596	1.232	0.431	0.250	0.242	0.330	0.618	0.253	0.253	0.436	0.235	0.164	0.249	0.681	0.776	0.406	0.912	4.273	1.830	0.025	0.082	0.122	0.123	0.250	0.110	0.049	0.121	0.032	0.266
491	chr1	144974320	145047820	+	0	NA	intron (NR_144517, intron 3 of 42)	intron (NR_144517, intron 3 of 42)	-13959	NM_001195260	9659	Hs.584841	NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding	3.626	nan	2.972	1.321	1.281	0.678	2.097	1.935	0.509	0.766	0.734	0.643	7.705	0.271	0.440	0.997	0.784	1.294	1.807	2.389	3.081	2.590	0.709	1.411	1.481	4.732	6.456	2.978	4.501	1.340	0.629	2.229	3.656	2.830	4.266	1.565	3.415	4.012	2.426	0.547	2.634	1.210	0.123	2.097	0.643	0.097	2.142	3.306	0.980
1863	chr12	20739259	20756775	+	0	NA	intron (NM_001244683, intron 1 of 14)	MLT1L|LTR|ERVL-MaLR	23219	NM_001244683	5139	Hs.386791	NM_000921	ENSG00000172572	PDE3A	CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB	phosphodiesterase 3A	protein-coding	nan	nan	nan	0.366	0.502	0.293	0.103	0.244	0.091	0.200	0.159	0.091	0.412	0.047	0.119	0.517	0.554	1.564	1.396	1.487	1.533	0.265	0.154	1.290	1.359	1.100	1.460	0.626	0.524	0.438	0.308	0.140	0.228	1.347	2.905	0.408	0.763	0.393	0.390	0.019	0.230	0.671	0.028	0.103	0.091		0.793	0.023	0.171
4495	chr2	131477412	131490074	+	0	NA	Intergenic	AluSp|SINE|Alu	-2900	NM_207364	344561	Hs.452574	NM_207364	ENSG00000173302	GPR148	BTR|PGR6	G protein-coupled receptor 148	protein-coding	nan	0.950	nan	0.061	1.175	0.471	0.282	0.098	0.038	0.111	0.110	0.700	4.925	0.241	0.061	0.474	0.664	0.440	0.671	1.733	1.159	5.988	0.992	0.357	0.350	0.481	0.783	1.539	nan	0.907	0.870	0.432	0.647	0.573	0.325	0.428	0.570	0.155	0.251	4.602	0.879	0.068	0.044	0.282	0.700	0.307	0.016	0.223	0.198
4672	chr2	203239274	203244781	+	0	NA	5' UTR (NM_001204, exon 1 of 13)	5' UTR (NM_001204, exon 1 of 13)	977	NM_001204	659	Hs.471119	NM_001204	ENSG00000204217	BMPR2	BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK	bone morphogenetic protein receptor type 2	protein-coding	7.518	5.366	4.980	4.945	4.719	2.709	2.783	2.854	0.291	2.853	1.424	5.905	12.950	4.539	0.140	3.296	4.944	4.824	6.487	9.113	8.550	7.148	3.064	11.576	12.011	4.372	5.486	7.165	13.851	9.208	11.008	2.937	8.198	5.174	4.458	11.459	12.071	3.363	1.846	6.077	3.588	1.068	3.204	2.783	5.905	1.730	3.421	3.112	4.274
5852	chr4	25431686	25443329	+	0	NA	Intergenic	MIR|SINE|MIR	58659	NM_001286756	29945	Hs.152173	NM_013367	ENSG00000053900	ANAPC4	APC4	anaphase promoting complex subunit 4	protein-coding	0.631	0.712	nan	0.234	0.345	0.207	0.208	0.142	0.128	0.460	0.290	0.132	0.295	0.009	0.052	0.295	0.194	0.241	0.304	0.233	0.385	1.498	0.422	0.302	0.329	0.400	0.651	0.508	0.464	0.754	0.524	0.096	0.230	0.127	0.077	0.187	0.238	nan	1.336	0.272	0.424	0.008	0.109	0.208	0.132	0.050	0.018	0.017	0.043
4098	chr19	45347042	45365474	+	0	NA	intron (NM_001042724, intron 1 of 8)	AluJr|SINE|Alu	6865	NM_001042724	5819	Hs.655455	NM_002856	ENSG00000130202	NECTIN2	CD112|HVEB|PRR2|PVRL2|PVRR2	nectin cell adhesion molecule 2	protein-coding	1.198	1.199	2.052	1.341	0.787	0.395	0.484	0.724	0.217	0.524	0.305	0.912	1.370	2.175	0.156	1.439	1.985	1.993	2.968	1.355	1.125	4.865	1.361	0.851	0.932	0.376	0.708	2.038	2.938	0.484	0.333	1.616	3.099	1.071	1.124	1.709	5.870	2.426	1.281	0.299	0.114	0.259	0.031	0.484	0.912	0.223	0.743	2.802	1.602
840	chr1	210044796	210060081	+	0	NA	Intergenic	Intergenic	51126	NM_014388	27042	Hs.194754	NM_014388	ENSG00000117597	DIEXF	C1orf107|DEF|DJ434O14.5|UTP25	digestive organ expansion factor homolog (zebrafish)	protein-coding	1.168	2.581	1.311	0.297	1.164	0.634	2.041	1.297	0.116	0.473	0.339	0.697	nan	0.073	0.111	0.460	0.468	0.555	1.004	1.119	1.075	nan	0.555	0.319	0.205	3.061	nan	0.663	0.631	0.570	0.414	0.207	0.316	3.405	4.814	0.450	0.956	1.692	1.329	1.005	0.326	0.658	0.095	2.041	0.697	0.516	0.229	0.084	0.162
4693	chr2	210288052	210292774	+	0	NA	intron (NM_001039538, intron 1 of 14)	intron (NM_001039538, intron 1 of 14)	1642	NM_001039538	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding	nan	5.234	nan	4.551	3.523	2.089	1.959	1.912	0.137	2.376	1.302	4.018	10.756	4.615	0.143	4.606	4.247	9.163	8.028	5.981	4.096	6.698	2.695	7.228	7.292	6.114	7.177	6.051	10.727	6.263	6.177	1.525	2.714	4.279	5.560	0.798	1.190	1.984	0.983	3.899	1.007	1.241	1.942	1.959	4.018	0.701	2.144	1.000	0.602
4541	chr2	148600287	148605769	+	0	NA	intron (NM_001278579, intron 2 of 11)	intron (NM_001278579, intron 2 of 11)	464	NM_001616	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding	4.337	nan	4.402	6.250	3.155	1.169	1.878	1.291	0.147	1.637	1.146	5.294	6.231	0.813	0.123	2.809	3.814	3.853	5.425	12.367	10.302	3.358	1.282	7.463	7.211	3.396	4.444	5.116	7.477	6.853	7.616	1.549	4.095	1.746	1.339	6.327	5.882	1.843	1.168	5.115	1.910	0.452	2.691	1.878	5.294	0.890	1.363	1.012	1.916
1411	chr11	47289533	47295551	+	0	NA	intron (NR_120569, intron 2 of 2)	intron (NR_120569, intron 2 of 2)	871	NM_001135943	8567	Hs.82548	NM_003682	ENSG00000110514	MADD	DENN|IG20|RAB3GEP	MAP kinase activating death domain	protein-coding	2.665	3.654	2.610	5.270	3.846	1.785	2.677	1.559	0.120	3.118	1.298	4.803	7.785	2.315	0.130	6.544	8.663	3.584	4.550	10.508	9.274	8.368	2.884	4.624	4.728	3.110	3.947	2.616	3.915	3.130	3.677	3.459	6.378	3.818	4.372	2.899	nan	3.021	1.329	3.538	7.637	1.316	2.094	2.677	4.803	1.411	2.833	3.390	1.460
1480	chr11	67033895	67046800	+	0	NA	intron (NM_001619, intron 1 of 20)	intron (NM_001619, intron 1 of 20)	6442	NM_001619	156	Hs.83636	NM_001619	ENSG00000173020	GRK2	ADRBK1|BARK1|BETA-ARK1	G protein-coupled receptor kinase 2	protein-coding	nan	0.963	2.242	1.784	2.438	1.113	1.478	0.941	0.124	0.870	0.345	2.531	1.388	0.726	0.094	3.579	5.335	1.277	1.964	3.705	3.558	2.788	1.056	2.847	2.724	1.188	1.549	4.797	5.263	0.922	0.866	2.274	3.736	1.053	1.195	0.793	0.881	1.511	0.887	0.606	1.738	0.227	0.786	1.478	2.531	1.012	2.205	1.599	0.238
5785	chr3	193453621	193465090	+	0	NA	Intergenic	L1MC2|LINE|L1	-114234	NR_046634	100873941	Hs.679364	NR_046634	ENSG00000224855	OPA1-AS1	-	OPA1 antisense RNA 1	ncRNA	nan	2.526	0.825	4.503	6.255	3.256	0.464	0.181	0.125	4.711	1.946	3.163	nan	0.029	0.073	0.279	0.440	0.257	0.555	1.027	1.081	11.982	8.084	0.374	0.502	0.201	0.424	7.026	8.117	0.570	0.288	0.354	0.502	4.651	3.414	0.457	0.616	3.422	1.432	0.754	1.087	1.095	0.697	0.464	3.163	0.161	1.754	0.141	0.258
4793	chr2	242125910	242136720	+	0	NA	intron (NM_001001666, intron 3 of 3)	L1MB3|LINE|L1	3391	NM_001001891	50636	Hs.163909	NM_001001666	ENSG00000146205	ANO7	D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G	anoctamin 7	protein-coding	0.788	nan	0.601	0.122	0.349	0.149	0.375	0.042	0.090	0.053	0.091	0.141	0.451	0.030	0.109	4.250	6.168	3.626	1.172	0.428	0.383	0.775	0.219	0.990	1.180	0.211	0.341	0.416	0.614	0.308	0.208	1.685	2.439	0.089	0.098	0.259	0.316	0.303	0.308	0.048	0.047	0.009	0.052	0.375	0.141	0.018	0.076	0.825	0.018
6962	chr6	129671170	129686873	+	0	NA	intron (NM_000426, intron 32 of 64)	intron (NM_000426, intron 32 of 64)	352349	NM_033515	93663	Hs.486458	NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding	0.742	0.798	0.706	0.146	0.165	0.103	0.368	0.086	0.072	0.072	0.105	0.106	0.229	0.042	0.123	0.433	0.448	0.555	0.471	0.188	0.263	7.351	1.250	0.343	0.296	0.344	0.395	0.467	0.627	0.720	0.226	0.224	0.329	0.070	0.110	0.213	0.427	0.443	0.495	0.014	1.021	0.006	0.026	0.368	0.106	0.030	0.026	0.095	0.079
3581	chr17	76221266	76225677	+	0	NA	Intergenic	Intergenic	-3920	NM_001204211	283999	Hs.632228	NM_001145529	ENSG00000204278	TMEM235	ARGM1	transmembrane protein 235	protein-coding	1.594	1.461	6.045	1.748	0.372	0.072	1.365	0.170	0.108	0.836	0.290	0.467	0.562	0.133	0.107	0.675	1.353	0.386	0.451	0.804	0.961	0.697	0.325	0.388	0.501	nan	3.104	2.200	2.386	3.890	4.284	0.363	0.513	0.359	0.627	0.797	1.124	nan	0.639	0.150	0.538	0.063	0.160	1.365	0.467	1.034	7.067	0.046	0.282
3265	chr17	7727306	7749156	+	0	NA	Intergenic	CpG	-5004	NM_001080424	23135	Hs.223678	NM_001080424	ENSG00000132510	KDM6B	JMJD3	lysine demethylase 6B	protein-coding	3.952	1.883	2.521	2.050	4.037	1.888	2.302	1.299	0.111	1.142	0.574	2.368	6.240	3.976	0.130	2.847	4.184	2.852	4.778	5.418	4.318	4.506	2.536	4.970	5.481	2.296	3.021	5.638	8.395	1.779	2.443	1.115	1.780	2.490	2.246	4.614	7.601	1.407	0.791	2.643	2.976	0.468	1.372	2.302	2.368	1.149	3.217	1.086	2.291
1588	chr11	95245015	95262818	+	0	NA	Intergenic	Intergenic	269038	NM_144664	143684	Hs.288304	NM_144664	ENSG00000077458	FAM76B	-	family with sequence similarity 76 member B	protein-coding	0.776	nan	0.709	0.069	0.259	0.206	0.801	0.099	0.046	0.168	0.183	0.047	0.613	0.055	0.122	0.604	0.386	0.312	nan	0.483	0.502	0.124	0.079	0.535	0.478	3.995	4.351	0.196	0.206	0.431	0.281	0.292	0.295	1.347	1.963	0.254	nan	1.124	0.754	0.098	0.065	0.413	0.164	0.801	0.047	0.125	0.058	0.074	0.195
7092	chr6	163108866	163129176	+	0	NA	intron (NM_013987, intron 1 of 10)	intron (NM_013987, intron 1 of 10)	-29143	NM_001080378	135138	Hs.25791	NM_152410	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG	PARK2 coregulated	protein-coding	0.761	nan	0.991	0.100	0.173	0.079	1.050	0.073	0.066	0.055	0.060	0.094	0.176	0.080	0.103	0.451	0.420	0.265	0.240	0.354	0.350	5.199	1.665	0.170	0.210	1.351	1.410	0.201	0.210	nan	0.412	0.116	0.191	3.521	2.786	0.445	0.861	0.338	0.319	0.017	0.016	1.009	0.035	1.050	0.094	0.014	0.045	0.030	0.304
4138	chr19	50368598	50374288	+	0	NA	promoter-TSS (NM_007254)	promoter-TSS (NM_007254)	-621	NM_007254	11284	Hs.78016	NM_007254	ENSG00000039650	PNKP	AOA4|EIEE10|MCSZ|PNK	polynucleotide kinase 3'-phosphatase	protein-coding	4.914	4.024	3.386	4.865	9.340	5.252	3.219	1.681	0.657	1.856	0.809	4.068	9.898	4.753	0.190	2.301	3.471	4.135	6.023	7.835	4.943	11.748	5.157	9.025	9.571	5.066	6.190	7.882	12.235	7.008	6.124	1.165	3.036	5.440	4.946	3.686	6.359	4.744	2.264	4.539	5.778	1.618	2.116	3.219	4.068	1.781	3.331	1.570	1.976
5744	chr3	183415046	183419122	+	0	NA	intron (NM_018023, intron 1 of 30)	L2|LINE|L2	1478	NM_018023	55689	Hs.632575	NM_018023	ENSG00000163872	YEATS2	-	YEATS domain containing 2	protein-coding	7.555	3.254	3.324	4.305	6.109	2.559	2.431	2.771	0.356	3.963	2.579	4.437	9.877	2.333	0.121	5.205	5.155	5.131	7.240	7.477	6.877	10.718	4.412	6.632	6.619	4.898	6.246	5.275	8.558	13.243	14.675	2.356	5.151	4.692	4.379	7.693	7.222	3.013	1.637	2.942	2.832	1.195	2.475	2.431	4.437	1.505	1.730	1.703	3.567
6213	chr5	26621118	26626867	+	0	NA	Intergenic	Intergenic	414697	NM_016279	1007	Hs.272212	NM_016279	ENSG00000113100	CDH9	-	cadherin 9	protein-coding	0.644	3.135	1.061	3.695	5.681	2.686	0.392	0.222	0.141	3.551	1.717	4.286	2.181	0.086	0.101	0.391	0.266	0.176	0.188	4.825	7.235	10.521	9.967	0.273	0.221	nan	1.076	3.052	3.613	0.589	0.248	0.138	0.235	1.987	2.455	0.172	0.229	nan	1.263	0.572	0.055	0.282	0.042	0.392	4.286		2.755	0.051	0.021
1795	chr12	6795699	6802138	+	0	NA	promoter-TSS (NM_133476)	promoter-TSS (NM_133476)	-180	NM_001039920	171017	Hs.103315	NM_133476	ENSG00000126746	ZNF384	CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1	zinc finger protein 384	protein-coding	3.740	nan	nan	6.465	3.948	1.995	3.465	1.155	0.026	2.153	0.906	3.831	7.842	3.792	0.208	2.636	2.439	4.044	6.280	nan	7.917	10.032	5.481	7.180	7.484	4.398	5.765	4.189	5.255	5.207	4.617	2.730	4.766	3.733	4.899	3.802	nan	1.881	0.767	2.787	2.805	0.903	3.868	3.465	3.831	6.851	1.069	1.598	1.527
7387	chr7	95694344	95730588	+	0	NA	intron (NM_001278422, intron 15 of 15)	intron (NM_001278422, intron 15 of 15)	136602	NR_030322	693176		NR_030322	ENSG00000208025	MIR591	MIRN591|hsa-mir-591	microRNA 591	ncRNA	nan	1.122	nan	0.267	4.894	2.632	1.388	0.134	0.121	4.975	3.069	1.467	1.966	0.110	0.141	1.619	1.312	15.400	19.020	0.661	0.863	4.624	3.093	0.381	0.355	1.124	1.313	0.261	0.322	0.517	0.335	1.806	4.246	11.272	12.255	0.322	nan	8.032	3.827	0.168	0.147	2.817	0.269	1.388	1.467	0.115	0.151	2.403	0.150
6869	chr6	89151199	89176120	+	0	NA	Intergenic	L1PB3|LINE|L1	85429	NR_110867	101928936	Hs.533080	NR_110867		LOC101928936	-	uncharacterized LOC101928936	ncRNA	0.834	0.764	nan	0.099	0.334	0.090	0.231	0.085	0.079	0.069	0.119	0.163	0.254	0.039	0.124	0.358	0.289	0.202	0.204	0.344	0.410	0.138	0.080	0.156	0.228	3.657	4.044	0.194	0.213	0.527	0.214	0.156	0.199	0.118	0.121	0.192	0.368	0.393	0.349	0.029	0.132	0.023	0.151	0.231	0.163	0.098	0.040	0.020	0.055
5662	chr3	171846761	171861253	+	0	NA	intron (NM_001135095, intron 3 of 25)	intron (NM_001135095, intron 3 of 25)	95663	NM_001135095	64778	Hs.744888	NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding	1.491	1.665	0.891	0.614	0.556	0.243	0.450	2.889	0.267	0.193	0.261	0.355	0.173	0.260	0.089	0.384	0.244	3.810	7.002	0.346	0.441	0.586	0.174	0.453	0.476	1.194	1.558	2.158	2.046	0.685	0.427	0.380	0.537	0.265	0.578	0.439	1.084	0.600	0.604	0.115	0.086	0.040	0.149	0.450	0.355	0.060	0.315	0.108	0.222
3273	chr17	8358706	8374490	+	0	NA	intron (NM_030808, intron 8 of 8)	intron (NM_030808, intron 8 of 8)	27428	NM_030808	81565	Hs.372123	NM_030808	ENSG00000166579	NDEL1	EOPA|MITAP1|NDE1L1|NDE2|NUDEL	nudE neurodevelopment protein 1 like 1	protein-coding	0.918	0.543	1.671	0.077	5.563	2.958	0.170	0.179	0.017	0.259	0.161	1.641	0.311	0.179	0.138	0.532	0.653	0.456	0.591	2.243	2.391	0.760	0.268	0.221	0.251	0.598	0.823	2.473	1.399	0.220	0.143	0.197	0.347	0.122	0.117	0.436	0.916	0.478	0.326	0.126	3.376	0.018	0.826	0.170	1.641	0.180	0.343	0.020	0.230
7277	chr7	48030414	48045572	+	0	NA	intron (NM_152782, intron 7 of 10)	L1MB8|LINE|L1	-18771	NR_037917	3364	Hs.152983	NM_004507	ENSG00000136273	HUS1	hHUS1	HUS1 checkpoint clamp component	protein-coding	1.174	1.344	nan	0.081	0.225	0.095	0.076	0.212	0.127	0.106	0.142	0.063	0.612	6.486	0.335	0.369	0.336	0.166	0.290	0.388	0.399	0.438	0.178	0.103	0.103	0.200	0.422	0.299	0.386	0.435	0.328	0.188	0.298	0.551	0.914	0.580	1.341	0.548	0.493	0.040	0.094	0.226	0.095	0.076	0.063	0.013	0.275	0.131	0.233
1689	chr11	118585175	118600728	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-42570	NM_007180	11181	Hs.129712	NM_007180	ENSG00000118094	TREH	TRE|TREA	trehalase	protein-coding	0.912	1.015	0.879	0.187	0.437	0.227	0.632	0.062	0.080	0.150	0.167	0.106	0.932	0.085	0.149	5.156	nan	3.280	4.510	0.570	0.574	0.537	0.130	0.340	0.350	0.241	nan	0.674	0.860	0.687	0.352	2.889	2.956	0.124	0.208	1.389	2.756	0.677	0.553	0.065	0.244	0.048	0.078	0.632	0.106	0.174	0.052	1.185	0.763
7713	chr8	63090515	63105719	+	0	NA	Intergenic	Intergenic	-63384	NR_130764	286183	Hs.654662	NM_173688	ENSG00000185942	NKAIN3	FAM77D	Sodium/potassium transporting ATPase interacting 3	protein-coding	0.898	0.693	0.598	0.064	0.193	0.021	0.102	0.044	0.116	0.041	0.123	0.055	0.266	0.029	0.073	0.326	0.151	0.188	0.315	0.404	0.515	0.153	0.103	0.059	0.061	0.926	nan	0.128	0.150	nan	0.292	0.138	0.217	0.149	0.113	0.135	0.243	0.592	0.566	0.040	0.058	0.025	0.034	0.102	0.055	2.614	0.039	0.032	0.024
1861	chr12	19339350	19366524	+	0	NA	intron (NM_001143821, intron 3 of 27)	L1MA4A|LINE|L1	-5322	NM_001256787	54477	Hs.188614	NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding	1.033	0.993	1.317	0.552	1.459	0.879	0.178	0.225	0.043	1.124	0.722	0.551	0.426	0.064	0.160	0.240	0.130	0.577	1.026	nan	1.704	4.809	2.996	0.343	0.318	1.191	1.631	0.852	0.739	0.466	0.273	0.172	0.357	1.694	2.189	0.601	1.712	1.398	0.708	0.231	0.130	0.429	0.402	0.178	0.551	0.007	0.329	0.095	0.299
2825	chr15	29032785	29044032	+	0	NA	intron (NR_037599, intron 3 of 13)	MIR|SINE|MIR	3428	NR_037599	646278	Hs.590143	NR_037599		PDCD6IPP2	-	PDCD6IP pseudogene 2	pseudo	nan	0.989	nan	0.804	0.313	0.240	0.275	0.109	0.030	0.642	0.411	0.707	2.450	0.087	0.098	0.444	0.459	0.282	0.408	1.688	1.650	0.163	0.075	1.203	1.209	0.388	0.594	4.437	6.505	nan	2.925	0.371	0.582	0.119	0.137	0.490	0.597	3.283	1.428	2.367	1.053	0.026	0.063	0.275	0.707	0.035	2.797	0.226	0.263
3312	chr17	17927383	17944112	+	0	NA	intron (NM_145691, intron 1 of 7)	intron (NM_145691, intron 1 of 7)	6733	NM_145691	91647	Hs.528889	NM_145691	ENSG00000171953	ATPAF2	ATP12|ATP12p|LP3663|MC5DN1	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding	1.656	0.987	2.482	2.018	1.162	0.568	0.673	0.304	0.203	0.759	0.389	0.996	1.537	0.260	0.048	1.482	2.125	1.023	nan	1.593	1.621	5.777	1.877	0.826	0.869	1.236	1.854	2.828	3.395	nan	3.347	0.548	0.952	2.133	2.765	1.420	2.431	2.163	0.955	0.196	0.620	0.694	1.275	0.673	0.996	0.470	3.705	0.193	0.781
3415	chr17	41462790	41497820	+	0	NA	Intergenic	Intergenic	3952	NM_001661	379	Hs.183153	NM_001661	ENSG00000175906	ARL4D	ARF4L|ARL6	ADP ribosylation factor like GTPase 4D	protein-coding	2.803	2.801	nan	2.237	2.761	1.532	1.092	0.975	0.284	1.149	0.637	0.929	3.665	0.989	0.126	2.167	2.492	1.589	2.377	2.533	nan	1.708	0.759	3.648	3.898	1.655	2.266	0.704	nan	3.230	2.593	1.181	1.518	2.356	2.505	2.744	8.404	2.182	1.309	1.287	1.852	0.776	0.725	1.092	0.929	1.156	0.992	0.614	2.460
7195	chr7	20996066	21006579	+	0	NA	intron (NR_126381, intron 2 of 4)	intron (NR_126381, intron 2 of 4)	126272	NR_126381	104355138	Hs.650722	NR_126381	ENSG00000232790	LINC01162	-	long intergenic non-protein coding RNA 1162	ncRNA	1.392	2.522	2.830	1.282	4.515	2.715	0.760	0.086	0.108	1.282	0.756	1.299	2.806	0.082	0.167	0.691	0.332	0.379	nan	1.253	1.435	2.766	1.656	0.379	0.361	0.530	0.848	0.742	0.771	0.561	0.236	0.432	0.323	5.590	10.704	0.136	nan	1.507	0.663	0.042	1.462	2.426	0.175	0.760	1.299	0.083	0.416	0.103	0.012
2897	chr15	60641581	60693629	+	0	NA	intron (NM_001002857, intron 4 of 13)	intron (NM_001002857, intron 4 of 13)	22580	NM_004039	302	Hs.511605	NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding	1.310	2.462	nan	0.540	2.938	1.510	2.366	2.085	0.357	1.060	0.573	2.739	3.318	1.355	0.102	0.378	0.269	3.926	9.202	1.693	1.619	nan	0.267	0.387	0.359	2.231	3.363	1.148	2.024	1.119	1.153	0.343	0.503	3.185	4.161	1.030	2.247	1.671	0.853	1.599	1.542	1.028	0.114	2.366	2.739	0.460	0.676	0.121	0.493
4051	chr19	39263420	39299491	+	0	NA	exon (NM_001042507, exon 3 of 4)	exon (NM_001042507, exon 3 of 4)	1605	NM_001042507	653499	Hs.558355	NM_001042507	ENSG00000178934	LGALS7B	GAL7|Gal-7|HKL-14|LGALS7|PI7	galectin 7B	protein-coding	0.998	1.818	0.814	1.157	0.300	0.173	0.478	0.124	0.224	0.130	0.100	0.246	3.641	0.105	0.099	0.277	0.288	0.237	0.443	0.404	0.394	1.550	0.337	0.457	0.511	0.612	0.946	0.692	0.885	nan	0.645	0.442	0.349	0.602	1.142	0.578	1.775	0.989	0.788	0.392	0.486	0.164	0.062	0.478	0.246	0.339	0.222	0.082	0.634
7940	chr8	133418800	133438082	+	0	NA	intron (NM_004519, intron 1 of 14)	intron (NM_004519, intron 1 of 14)	31068	NM_001204824	3786	Hs.374023	NM_004519	ENSG00000184156	KCNQ3	BFNC2|EBN2|KV7.3	potassium voltage-gated channel subfamily Q member 3	protein-coding	nan	0.558	0.688	0.192	0.270	0.182	0.122	0.079	0.058	0.123	0.060	0.044	1.880	0.029	0.088	0.695	1.177	0.502	0.399	0.383	0.454	0.360	0.177	nan	5.324	0.347	0.478	7.772	7.047	0.883	0.845	1.212	1.433	0.998	1.133	0.708	1.472	0.256	0.391	0.040	0.051	0.175	1.570	0.122	0.044	0.655	0.021	1.385	0.332
4195	chr2	6206041	6224170	+	0	NA	Intergenic	Intergenic	92995	NR_026833	400940	Hs.378814	NM_207479		LOC400940	-	uncharacterized LOC400940	ncRNA	1.015	2.355	0.828	0.581	5.119	2.917	1.768	0.088	0.053	0.521	0.291	3.326	16.643	0.034	0.109	2.180	3.325	6.963	5.441	4.721	3.901	5.986	3.028	0.082	0.061	2.001	2.029	4.134	4.775	3.750	3.675	0.197	0.538	1.326	0.975	0.924	1.749	0.219	0.233	6.572	10.986	0.362	0.083	1.768	3.326	0.638	3.689	0.317	1.188
1654	chr11	113533612	113537202	+	0	NA	Intergenic	L1MB7|LINE|L1	41688	NR_110047	80975	Hs.46720	NM_030770	ENSG00000166682	TMPRSS5	SPINESIN	transmembrane protease, serine 5	protein-coding	0.908	3.513	0.662	1.108	0.335	0.089	0.605	0.694	0.178	0.304	0.115	0.365	1.173	0.091	0.139	2.150	nan	4.333	13.726	0.497	0.425	2.610	0.772	0.343	0.378	0.175	nan	2.125	1.437	1.457	1.203	19.313	14.036	1.017	2.581	0.258	0.759	0.433	0.508	0.093	0.960	0.134	0.466	0.605	0.365	0.193	0.029	7.332	0.069
4738	chr2	224445163	224487656	+	0	NA	intron (NM_003469, intron 1 of 1)	intron (NM_003469, intron 1 of 1)	808	NM_003469	7857	Hs.516726	NM_003469	ENSG00000171951	SCG2	CHGC|EM66|SN|SgII	secretogranin II	protein-coding	nan	1.522	0.923	1.328	4.951	2.627	1.324	0.456	0.084	1.321	0.599	1.437	nan	0.056	0.130	0.890	1.163	0.618	0.442	1.170	1.202	2.893	1.341	0.241	0.249	1.767	2.268	1.913	nan	0.423	0.264	0.208	0.342	1.899	2.485	0.437	nan	2.425	1.117	0.259	0.497	0.277	0.159	1.324	1.437	0.057	2.190	0.149	0.132
5432	chr3	96524805	96545775	+	0	NA	intron (NM_001080448, intron 1 of 17)	intron (NM_001080448, intron 1 of 17)	1865	NM_001278301	285220	Hs.272208	NM_173655	ENSG00000080224	EPHA6	EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066	EPH receptor A6	protein-coding	0.748	1.127	0.774	0.083	0.248	0.214	0.079	0.107	0.114	0.274	0.294	0.086	0.481	0.051	0.083	0.299	0.210	0.266	0.365	0.209	0.261	0.411	0.141	1.417	1.365	2.950	3.455	0.311	0.282	10.972	8.869	0.213	0.371	0.048	0.048	0.230	0.312	0.331	0.289	0.037	0.060	0.014	0.015	0.079	0.086	0.014	0.443	0.104	0.065
6740	chr6	36559865	36570417	+	0	NA	intron (NR_036610, intron 2 of 6)	AluSx|SINE|Alu	3051	NM_003017	6428	Hs.405144	NM_003017	ENSG00000112081	SRSF3	SFRS3|SRp20	serine and arginine rich splicing factor 3	protein-coding	nan	3.144	nan	4.311	4.472	2.585	2.976	2.156	0.353	2.101	0.868	5.181	8.353	3.612	0.234	5.492	5.755	5.751	nan	nan	6.827	6.511	3.698	11.650	12.037	3.539	4.689	6.913	8.962	6.293	7.199	3.738	8.453	6.799	5.817	6.944	6.098	2.818	1.843	2.811	3.139	0.994	2.445	2.976	5.181	0.838	1.451	2.490	2.019
5719	chr3	180980161	181048642	+	0	NA	intron (NR_075093, intron 2 of 4)	(TA)n|Simple_repeat|Simple_repeat	64876	NR_125730	103625684		NR_125730	ENSG00000207357	RNU6-2	U6-2	RNA, U6 small nuclear 2	snRNA	0.846	1.063	0.682	0.143	0.346	0.180	0.316	0.128	0.131	0.175	0.214	0.104	0.499	0.095	0.096	0.272	0.171	0.172	0.156	0.379	0.461	7.296	3.349	0.133	0.132	0.221	0.341	0.382	0.495	0.870	0.543	0.125	0.160	0.135	0.142	0.190	0.314	0.585	0.460	0.027	0.122	0.014	0.072	0.316	0.104	0.013	0.047	0.023	0.056
4638	chr2	183578347	183584163	+	0	NA	intron (NR_073367, intron 1 of 22)	intron (NR_073367, intron 1 of 22)	487	NR_073367	54431	Hs.516632	NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	2.543	3.429	2.118	7.491	3.997	1.734	2.149	1.822	0.112	2.000	1.028	3.129	10.802	1.644	0.093	1.951	3.081	1.780	2.431	4.332	3.320	8.650	3.283	7.443	7.235	nan	2.946	15.565	17.862	2.569	2.242	1.145	2.159	2.689	2.635	3.300	nan	2.102	1.186	4.749	2.995	0.297	0.805	2.149	3.129	0.698	1.676	0.579	0.595
3268	chr17	8053399	8068854	+	0	NA	Intergenic	AluSx|SINE|Alu	5068	NM_001330125	6844	Hs.25348	NM_014232	ENSG00000220205	VAMP2	SYB2|VAMP-2	vesicle associated membrane protein 2	protein-coding	2.829	2.462	2.298	1.251	3.342	1.677	2.940	1.798	0.186	0.875	0.458	2.510	5.538	2.387	0.090	2.982	4.179	3.473	5.639	5.338	4.230	5.056	2.844	2.738	2.777	1.384	1.923	4.027	7.049	1.778	1.639	1.487	2.155	1.180	1.273	4.982	9.156	0.634	0.388	1.540	2.012	0.218	1.630	2.940	2.510	0.522	3.325	0.905	3.195
3016	chr16	1115746	1141657	+	0	NA	promoter-TSS (NR_027242)	promoter-TSS (NR_027242)	30	NR_027242	146336	Hs.250557	NM_182510	ENSG00000261713	SSTR5-AS1	-	SSTR5 antisense RNA 1	ncRNA	0.604	nan	1.055	0.079	0.408	0.135	0.149	0.063	0.062	0.080	0.060	1.485	0.874	0.063	0.065	0.192	0.157	0.081	0.098	0.379	0.265	nan	0.114	0.141	0.134	0.095	nan	0.134	0.104	0.367	0.196	0.116	0.095	0.547	0.471	0.060	0.106	1.424	0.615	2.349	0.103	0.077	0.015	0.149	1.485	0.098	1.441	0.023	0.024
6725	chr6	34103622	34122790	+	0	NA	intron (NM_001256811, intron 1 of 9)	CpG	708	NM_001256811	2914	Hs.429018	NM_000841	ENSG00000124493	GRM4	GPRC1D|MGLUR4|mGlu4	glutamate metabotropic receptor 4	protein-coding	nan	1.424	nan	0.458	1.023	0.486	0.724	0.098	0.096	0.284	0.188	1.319	1.405	0.313	0.098	0.640	1.161	0.420	nan	nan	1.432	1.287	0.393	0.286	0.278	0.423	0.718	1.930	2.567	3.617	3.999	0.797	0.760	1.017	0.829	1.117	2.395	0.643	0.469	0.790	1.108	0.231	0.601	0.724	1.319	0.384	0.053	0.304	0.610
7406	chr7	100025442	100030833	+	0	NA	exon (NM_019606, exon 1 of 4)	exon (NM_019606, exon 1 of 4)	883	NM_019606	56257	Hs.178011	NM_019606	ENSG00000146834	MEPCE	BCDIN3	methylphosphate capping enzyme	protein-coding	nan	3.367	5.808	6.880	8.495	4.469	5.737	4.698	0.690	5.496	1.873	6.597	11.075	8.701	0.211	9.242	9.209	7.881	10.747	13.447	13.550	8.373	7.074	18.644	20.198	4.235	6.020	7.848	11.258	8.607	7.776	7.144	10.561	7.945	9.018	6.610	nan	5.356	2.587	7.013	8.768	2.131	5.627	5.737	6.597	2.229	3.690	4.600	3.074
2855	chr15	42141494	42172699	+	0	NA	intron (NM_016642, intron 39 of 67)	MIRc|SINE|MIR	1653	NR_036195	100423013		NR_036195	ENSG00000264850	MIR4310	-	microRNA 4310	ncRNA	0.734	0.480	nan	0.242	0.326	0.142	0.260	0.101	0.092	0.293	0.196	0.152	0.746	0.056	0.051	0.473	0.745	0.238	0.403	0.580	0.602	0.487	0.220	0.252	0.305	0.177	nan	0.961	1.110	0.764	0.674	0.393	0.409	0.192	0.162	0.312	0.398	1.509	0.803	2.383	0.724	0.012	0.073	0.260	0.152	0.133	0.131	0.054	0.100
6662	chr6	21702618	21977656	+	0	NA	intron (NR_015410, intron 4 of 11)	L1MB1|LINE|L1	173462	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA	1.126	1.018	nan	0.897	0.416	0.209	0.655	0.719	0.198	0.239	0.161	0.782	nan	4.037	0.183	0.498	0.468	0.973	nan	0.665	0.740	nan	0.373	0.858	0.866	0.717	1.019	1.391	1.314	0.581	0.294	0.297	0.497	0.354	0.501	0.350	0.699	0.727	0.527	0.370	0.202	0.088	0.129	0.655	0.782	0.076	0.216	0.262	0.223
4810	chr20	2631606	2635141	+	0	NA	promoter-TSS (NR_031699)	promoter-TSS (NR_031699)	-50	NR_031699	100302138		NR_031699	ENSG00000101361	MIR1292	MIRN1292|hsa-mir-1292|mir-1292	microRNA 1292	ncRNA	6.644	5.548	3.618	8.355	6.705	3.683	4.679	1.896	0.339	3.282	1.874	7.218	11.859	5.254	0.103	12.488	11.690	5.411	7.352	10.067	9.191	11.998	4.758	9.071	8.271	6.097	8.360	13.068	16.129	15.732	19.743	6.539	15.232	9.536	8.349	9.312	8.626	3.002	1.859	3.771	8.175	1.689	2.676	4.679	7.218	2.471	5.257	3.795	3.728
2145	chr12	112442994	112453186	+	0	NA	intron (NM_001193453, intron 1 of 9)	intron (NM_001193453, intron 1 of 9)	2933	NM_001294314	89894	Hs.506815	NM_138341	ENSG00000198270	TMEM116	-	transmembrane protein 116	protein-coding	nan	nan	2.630	3.304	3.573	1.619	2.347	1.435	0.286	1.890	1.038	2.906	6.471	2.850	0.180	3.129	2.675	3.352	4.347	nan	nan	nan	2.714	9.218	9.237	2.745	3.084	nan	nan	3.312	2.875	2.059	2.972	3.012	4.378	2.725	2.995	nan	1.808	3.087	3.112	0.755	1.510	2.347	2.906	0.785	1.549	0.737	0.979
8355	chrUn_gl000216	17710	25525	+	0	NA	NA	Intergenic	NA	NA									nan	10.366	nan	1.928	nan	1.680	nan	1.037	7.244	0.863	3.180	0.985	4.816	0.717	3.330	2.786	0.838	0.853	1.078	2.293	3.993	0.920	0.596	1.373	1.121	nan	3.642	1.579	1.863	nan	0.739	0.757	1.623	0.615	1.193	1.267	2.224	0.742	1.254	0.426	2.004	0.673	0.753	nan	0.985	0.465	0.625	0.733	0.676
3693	chr18	24028548	24070773	+	0	NA	intron (NM_001258222, intron 3 of 4)	intron (NM_001258222, intron 3 of 4)	46701	NR_110762	100506787	Hs.734746	NR_110762		LINC01543	-	long intergenic non-protein coding RNA 1543	ncRNA	0.934	1.397	2.174	0.703	0.959	0.513	0.724	0.190	0.042	0.579	0.344	0.919	1.779	0.059	0.073	1.714	1.833	4.040	nan	2.421	2.362	0.278	0.151	1.698	1.768	0.414	0.619	1.516	2.377	0.421	0.250	0.526	0.777	0.258	0.253	0.322	0.876	3.848	2.071	0.624	0.288	0.022	0.099	0.724	0.919	0.170	0.177	0.317	0.140
739	chr1	187609752	187619336	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	201784	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA	nan	nan	1.354	0.219	0.306	0.100	0.292	0.100	0.117	0.263	0.150	0.337	0.345	0.045	0.098	0.507	0.280	0.932	1.175	0.889	nan	0.440	0.149	nan	0.293	4.470	4.306	1.308	0.810			0.213	0.448	0.178	0.231	0.932	nan	0.501	0.422	0.063	0.157	0.070	0.050	0.292	0.337	0.061	0.116	0.151	0.553
7437	chr7	113517990	113523464	+	0	NA	intron (NM_002711, intron 3 of 3)	intron (NM_002711, intron 3 of 3)	38355	NM_002711	5506	Hs.458309	NM_002711	ENSG00000154415	PPP1R3A	GM|PP1G|PPP1R3	protein phosphatase 1 regulatory subunit 3A	protein-coding	nan	0.476	0.717	0.112	0.220	0.118	0.105	0.163	0.117	0.087	0.141	0.131	0.248	0.020	0.208	1.663	0.549	9.551	6.069	0.237	0.422	0.107	0.079	1.926	2.089	0.304	0.529	0.168	0.238	1.336	1.011	1.713	3.475	0.175	0.201	0.288	0.355	0.396	0.540	0.040	0.148	0.018	0.073	0.105	0.131	0.158	0.030	1.344	
876	chr1	220688360	220706834	+	0	NA	Intergenic	Intergenic	-3928	NM_001286126	4139	Hs.497806	NM_018650	ENSG00000116141	MARK1	MARK|Par-1c|Par1c	microtubule affinity regulating kinase 1	protein-coding	2.794	nan	2.995	4.965	3.577	2.016	1.587	0.182	0.044	1.288	0.625	5.590	7.403	0.357	0.116	1.285	1.855	1.393	2.169	5.902	nan	0.261	0.155	3.518	3.647	0.927	1.237	4.667	4.838	3.001	2.653	0.512	1.228	1.122	0.707	2.251	2.487	2.737	1.306	3.338	0.839	0.200	1.138	1.587	5.590	0.670	1.703	0.262	0.741
7795	chr8	94831405	94901488	+	0	NA	Intergenic	AluSz|SINE|Alu	61901	NR_039602	100616169		NR_039602	ENSG00000264448	MIR378D2	mir-378d-2	microRNA 378d-2	ncRNA	nan	0.891	0.965	0.268	0.356	0.216	1.642	0.460	0.151	0.072	0.071	0.186	0.637	2.768	0.141	0.255	0.198	0.459	nan	1.010	1.033	1.205	0.324	0.227	0.246	0.323	0.577	0.932	1.078	0.492	0.278	0.178	0.257	0.320	0.309	0.390	0.909	0.940	0.713	0.076	0.122	0.024	0.258	1.642	0.186	0.015	0.092	0.045	0.180
5636	chr3	166767607	166789460	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	162062	NR_135545	105374194		NR_135545		LOC105374194	inv3q26.1	uncharacterized LOC105374194	ncRNA	0.999	1.888	0.813	0.462	0.304	0.125	1.866	0.123	0.136	0.210	0.237	0.071	0.320	0.035	0.071	0.288	0.231	0.286	0.860	0.829	0.975	12.613	7.847	0.166	0.166	0.393	0.559	nan	0.587	nan	0.445	0.113	0.167	1.227	1.337	0.399	0.866	1.164	0.761	0.040	0.134	0.288	0.040	1.866	0.071	0.057	0.055	0.032	0.221
7989	chr8	143807286	143813474	+	0	NA	intron (NM_016647, intron 1 of 1)	AluY|SINE|Alu	1759	NM_016647	51337	Hs.368402	NM_016647	ENSG00000130193	THEM6	C8orf55|DSCD75	thioesterase superfamily member 6	protein-coding	3.865	2.632	nan	2.586	5.092	2.355	3.185	1.212	0.183	0.787	0.643	4.977	9.777	1.285	0.094	2.845	3.781	1.854	3.095	nan	9.794	nan	1.468	2.531	2.797	2.187	3.174	0.419	0.423	2.186	3.740	5.151	8.390	4.058	2.844	2.588	2.151	1.550	0.814	6.773	3.075	0.676	0.836	3.185	4.977	0.935	2.838	3.160	0.513
7367	chr7	89159639	89167153	+	0	NA	Intergenic	L2|LINE|L2	-585318	NR_003551	442523	Hs.406964	NR_003551	ENSG00000235436	DPY19L2P4	-	DPY19L2 pseudogene 4	pseudo	0.589	0.511	0.666	0.084	0.172	0.127	0.153	0.098	0.131	0.042	0.055	0.079	0.137	0.029	0.122	1.214	0.518	10.291	1.013	0.216	0.327	0.104	0.065	1.157	1.175	0.273	0.291	0.148	0.155	0.368	0.155	0.432	1.024	0.084	0.088	0.166	nan	0.493	0.599	0.015	0.048		0.053	0.153	0.079			0.147	0.017
4751	chr2	232564325	232583443	+	0	NA	intron (NM_002823, intron 1 of 4)	CpG-16069	649	NM_001099285	5757	Hs.459927	NM_002823	ENSG00000187514	PTMA	TMSA	prothymosin, alpha	protein-coding	5.695	nan	6.488	5.180	5.617	3.072	4.473	1.168	0.109	2.017	1.117	5.032	9.629	3.317	0.148	6.714	6.876	5.318	7.534	7.321	6.537	4.891	3.244	10.003	10.944	3.608	4.954	9.726	nan	7.591	9.606	5.161	9.977	4.543	4.185	9.596	5.760	1.817	1.198	7.063	3.088	0.951	2.776	4.473	5.032	1.001	2.477	2.019	2.343
3913	chr18	76527404	76537044	+	0	NA	Intergenic	Intergenic	-208051	NM_171999	27164	Hs.700557	NM_171999	ENSG00000256463	SALL3	ZNF796	spalt like transcription factor 3	protein-coding	nan	nan	0.701	0.444	0.304	0.116	1.081	0.039	0.050	0.682	0.301	1.598	1.571		0.061	0.266	0.083	0.276	0.473	3.288	nan	5.540	2.576	0.117	0.146	0.076	0.098	4.047	nan	0.225	0.111	0.263	0.176	4.966	7.337	0.045	0.081	0.210	0.323	0.006	0.047	1.113	0.154	1.081	1.598		0.053	0.041	0.032
7151	chr7	8292399	8305703	+	0	NA	intron (NM_004968, intron 1 of 13)	intron (NM_004968, intron 1 of 13)	2631	NM_022307	3382	Hs.487561	NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding	2.149	2.756	3.933	3.721	8.505	4.522	0.691	0.092	0.061	3.985	1.938	7.654	nan	0.345	0.103	4.150	4.511	1.084	nan	5.224	4.816	nan	4.936	12.285	12.746	0.340	0.634	nan	7.198	0.667	0.642	1.429	2.984	6.369	6.539	0.696	1.202	2.799	1.475	0.963	1.900	1.342	1.762	0.691	7.654	0.499	2.482	1.032	0.065
3624	chr17	80396552	80422064	+	0	NA	promoter-TSS (NM_001033046)	promoter-TSS (NM_001033046)	-601	NR_036516	79415	Hs.163113	NM_001033046	ENSG00000178927	C17orf62	-	chromosome 17 open reading frame 62	protein-coding	2.034	2.137	1.553	2.007	3.275	1.629	1.465	1.141	0.232	1.112	0.523	3.224	3.725	1.093	0.126	2.785	nan	1.384	2.175	nan	3.478	3.250	1.350	2.443	2.522	1.299	1.867	3.083	6.381	0.806	0.946	1.097	1.752	1.418	1.541	1.464	1.828	1.615	0.987	1.308	2.282	0.272	0.575	1.465	3.224	0.363	1.753	0.376	0.577
7266	chr7	43676495	43707204	+	0	NA	intron (NM_001321202, intron 1 of 3)	intron (NM_001321202, intron 1 of 3)	69157	NM_004760	9263	Hs.709489	NM_004760	ENSG00000164543	STK17A	DRAK1	serine/threonine kinase 17a	protein-coding	2.800	1.564	nan	0.404	0.660	0.375	0.559	2.345	0.236	0.307	0.200	0.560	0.925	0.155	0.165	1.208	1.809	0.729	1.185	0.444	0.545	0.498	0.178	0.488	0.518	1.059	1.835	0.447	0.604	0.380	0.251	0.347	0.554	1.004	1.641	1.196	3.168	0.454	0.392	0.953	0.098	0.291	0.142	0.559	0.560	0.262	0.520	0.142	0.828
8393	chrX	69696108	69707604	+	0	NA	intron (NM_020730, intron 4 of 13)	intron (NM_020730, intron 4 of 13)	-26012	NR_109801	100873930	Hs.571699	NR_046586	ENSG00000231651	DLG3-AS1	-	DLG3 antisense RNA 1	ncRNA	nan	nan	1.027	0.673	2.068	0.932	0.366	0.086	0.021	1.106	0.437	0.722	9.917	0.056	0.073	1.627	1.444	1.774	3.418	0.547	0.810	1.864	0.576	0.535	0.530	0.767	1.182	1.756	2.238	2.650	2.332	1.149	2.125	1.603	1.720	2.614	5.218	0.720	0.512	0.741	0.285	0.257	0.262	0.366	0.722	0.100	0.115	1.009	2.308
3803	chr18	47994885	48013795	+	0	NA	Intergenic	Intergenic	-82144	NM_002747	5596	Hs.433728	NM_002747	ENSG00000141639	MAPK4	ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK	mitogen-activated protein kinase 4	protein-coding	nan	1.490	0.961	0.329	0.312	0.178	0.376	0.024	0.037	0.274	0.133	0.285	0.498	0.031	0.082	0.588	0.554	0.187	0.314	0.712	0.831	9.447	3.631	0.129	0.111	0.523	0.622	1.635	0.896	0.409	0.228	0.362	0.598	2.230	1.561	0.195	nan	5.410	3.089	1.926	0.859	0.414	0.080	0.376	0.285	0.015	0.027	0.336	0.078
772	chr1	201267784	201283939	+	0	NA	intron (NM_001005337, intron 2 of 13)	AluYc|SINE|Alu	23281	NM_000299	5317	Hs.497350	NM_000299	ENSG00000081277	PKP1	B6P	plakophilin 1	protein-coding	1.633	4.215	1.594	0.316	0.719	0.344	0.413	0.134	0.039	0.448	0.176	0.966	9.442	0.076	0.090	0.538	0.544	2.830	10.397	0.992	0.889	1.877	0.458	nan	nan	0.790	1.226	1.572	1.711	0.503	0.444	0.359	0.559	0.755	1.032	0.530	1.023	0.986	0.733	0.586	0.303	0.101	0.183	0.413	0.966	0.467	0.176	0.146	0.237
8053	chr9	13548943	13571569	+	0	NA	Intergenic	Intergenic	-128928	NR_033863	401492	Hs.632651	NR_033863	ENSG00000270547	LINC01235	-	long intergenic non-protein coding RNA 1235	ncRNA	nan	nan	1.191	1.741	0.454	0.276	0.315	0.389	0.142	2.427	1.504	1.923	13.630	0.048	0.071	0.255	0.127	0.498	0.429	1.424	1.294	1.629	0.457	0.123	0.125	15.697	16.361	0.627	0.555	0.405	0.236	0.116	0.241	2.842	2.437	0.202	0.351	5.625	2.887	1.004	0.054	0.261	0.063	0.315	1.923	0.039	1.331	0.070	0.033
4514	chr2	137671918	137680579	+	0	NA	intron (NM_001316349, intron 2 of 27)	intron (NM_001316349, intron 2 of 27)	153116	NM_001316349	80731	Hs.68533	NM_001080427	ENSG00000144229	THSD7B	-	thrombospondin type 1 domain containing 7B	protein-coding	nan	0.537	nan	0.086	0.176	0.092	0.545	0.088	0.167	0.054	0.048	0.353	0.231	0.037	0.072	0.273	0.211	0.171	0.228	0.864	1.384	0.055	0.048	0.096	0.082	5.028	5.798	0.372	nan	2.393	1.354	0.156	0.123	0.525	0.408	0.823	2.059	0.445	0.381	0.067	0.051	0.208	1.940	0.545	0.353	0.881	0.035	0.011	0.568
7536	chr7	150495799	150512959	+	0	NA	Intergenic	L1MEd|LINE|L1	-5931	NM_014020	28959	Hs.647090	NM_014020	ENSG00000106565	TMEM176B	LR8|MS4B2	transmembrane protein 176B	protein-coding	0.796	0.776	nan	2.487	0.805	0.453	0.132	0.131	0.172	1.396	0.692	1.675	0.638	0.046	0.128	0.389	0.413	0.850	0.457	0.825	1.046	5.988	1.429	0.149	0.135	0.115	0.242	1.296	1.381	0.414	0.250	0.241	0.303	3.559	2.552	0.223	0.623	1.680	0.979	0.141	1.085	1.298	0.023	0.132	1.675	0.040	0.064	0.023	0.073
4651	chr2	192788699	192812558	+	0	NA	Intergenic	Intergenic	-88622	NM_004657	8436	Hs.26530	NM_004657	ENSG00000168497	SDPR	CAVIN2|PS-p68|SDR|cavin-2	serum deprivation response	protein-coding	1.230	nan	1.221	0.232	0.265	0.194	0.377	0.665	0.168	0.092	0.137	0.065	0.655	0.041	0.066	0.301	0.232	0.295	0.419	0.290	0.377	0.347	0.142	0.363	0.394	5.880	6.169	0.721	0.571	0.743	0.489	0.160	0.233	0.168	0.324	0.410	1.005	0.363	0.299	0.074	0.092	0.160	0.183	0.377	0.065	0.115	0.055	0.062	0.258
6775	chr6	43736804	43743450	+	0	NA	intron (NM_001287044, intron 1 of 6)	intron (NM_001287044, intron 1 of 6)	405	NM_001287044	7422	Hs.73793	NM_003376	ENSG00000112715	VEGFA	MVCD1|VEGF|VPF	vascular endothelial growth factor A	protein-coding	5.572	3.135	4.722	3.242	5.580	2.494	6.008	5.160	0.801	1.843	1.042	4.910	7.339	6.389	0.122	3.106	6.495	4.707	7.538	5.873	5.833	4.324	1.625	15.557	16.860	1.630	2.443	7.535	nan	5.104	7.615	6.004	11.113	1.771	2.365	5.201	8.905	1.283	0.736	4.925	5.742	0.524	4.749	6.008	4.910	1.298	2.174	3.179	3.329
2032	chr12	78071142	78084426	+	0	NA	Intergenic	L1ME2|LINE|L1	-147285	NM_001024383	89795	Hs.655301	NM_014903	ENSG00000067798	NAV3	POMFIL1|STEERIN3|unc53H3	neuron navigator 3	protein-coding	nan	0.703	0.621	0.144	0.288	0.145	0.154	0.503	0.098	0.148	0.248	0.134	0.350	0.025	0.073	0.318	0.162	0.191	0.249	0.557	0.731	0.229	0.127	0.315	0.350	4.225	4.604	nan	0.494	0.447	0.261	0.161	0.185	0.064	0.067	0.317	0.617	nan	0.790	0.105	0.198		0.034	0.154	0.134	0.066	0.039	0.082	0.214
8256	chr9	123139895	123152664	+	0	NA	Intergenic	Intergenic	-138951	NR_029604	406939		NR_029604	ENSG00000207814	MIR147A	MIR147|MIRN147|hsa-mir-147a	microRNA 147a	ncRNA	nan	nan	4.016	4.956	4.179	2.085	0.402	0.525	0.087	3.344	1.432	2.513	nan	0.034	0.063	0.168	0.316	0.305	0.356	5.098	6.151	4.449	1.718	0.457	0.428	0.335	nan	6.591	5.421	0.422	0.337	0.273	0.334	5.145	5.026	0.249	0.399	nan	1.844	2.175	0.549	1.986	0.482	0.402	2.513	0.191	5.003	0.100	0.117
7813	chr8	97807154	97851015	+	0	NA	intron (NM_016134, intron 2 of 7)	Tigger1|DNA|TcMar-Tigger	171629	NM_016134	10404	Hs.156178	NM_016134	ENSG00000104324	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding	7.389	4.198	7.008	0.205	0.304	0.159	0.151	0.984	0.125	0.050	0.072	0.313	0.470	0.064	0.103	0.377	0.203	0.264	nan	0.485	0.594	0.513	0.216	0.232	0.244	0.301	0.463	1.015	1.048	0.445	0.220	0.175	0.246	0.164	0.208	5.464	9.059	0.345	0.380	0.028	0.159	0.045	0.067	0.151	0.313	0.055	0.049	0.043	2.652
653	chr1	169067127	169090477	+	0	NA	intron (NM_001677, intron 1 of 5)	intron (NM_001677, intron 1 of 5)	2855	NM_001677	481	Hs.291196	NM_001677	ENSG00000143153	ATP1B1	ATP1B	ATPase Na+/K+ transporting subunit beta 1	protein-coding	2.621	nan	3.673	1.372	2.700	1.548	2.099	1.108	0.255	1.559	0.958	1.947	9.609	0.440	0.116	2.552	3.216	3.846	6.608	4.446	nan	3.003	1.140	2.287	2.212	2.392	2.933	3.056	nan	1.438	1.752	1.851	3.256	1.324	1.211	1.446	2.171	1.391	1.020	1.926	5.013	0.246	0.782	2.099	1.947	0.370	1.520	1.231	0.255
7582	chr8	5921695	5936353	+	0	NA	Intergenic	Intergenic	335045	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	ncRNA	0.428	2.601	0.507	1.899	0.534	0.164	1.741	0.081	0.044	0.902	0.385	8.798	1.661	0.038	0.088	0.322	0.149	0.204	0.204	8.751	11.055	6.114	1.879	0.133	0.155	0.249	0.405	2.144	2.423	nan	0.210	0.076	0.055	0.069	0.052	0.236	0.404	4.661	2.439	6.883	2.473	0.039	0.049	1.741	8.798	0.007	0.298	0.020	0.100
8274	chr9	128604569	128620130	+	0	NA	intron (NR_024123, intron 2 of 6)	intron (NR_024123, intron 2 of 6)	101871	NM_001134778	5090	Hs.428027	NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding	nan	nan	1.429	0.388	0.375	0.228	0.436	0.297	0.079	0.358	0.318	0.169	nan	0.182	0.070	0.181	0.162	0.206	0.357	0.446	0.547	0.644	0.255	0.227	0.224	1.270	nan	0.528	0.552	6.314	4.242	0.096	0.174	1.508	1.612	1.962	4.317	nan	0.480	0.057	0.206	0.459	0.097	0.436	0.169	0.262	0.072	0.038	1.559
1692	chr11	118961843	118966239	+	0	NA	TTS (NM_002105)	TTS (NM_002105)	2136	NM_002105	3014	Hs.477879	NM_002105	ENSG00000188486	H2AFX	H2A.X|H2A/X|H2AX	H2A histone family member X	protein-coding	3.348	3.387	3.606	4.536	4.220	1.914	2.618	0.548		2.545	1.845	5.349	10.144	3.705	0.159	6.383	7.565	4.151	6.379	7.024	6.519	8.366	2.771	7.306	6.170	3.999	5.672	6.153	6.260	4.704	7.883	7.877	16.894	3.819	3.655	4.480	4.658	2.410	1.660	4.568	4.464	1.005	4.499	2.618	5.349	0.726	2.350	3.578	1.463
2677	chr14	75529348	75546622	+	0	NA	exon (NM_024643, exon 2 of 3)	exon (NM_024643, exon 2 of 3)	1705	NM_001042430	79696	Hs.48642	NM_024643	ENSG00000119703	ZC2HC1C	C14orf140|FAM164C	zinc finger C2HC-type containing 1C	protein-coding	3.320	1.844	1.328	2.696	2.016	1.023	2.040	1.191	0.336	0.662	0.508	2.303	4.487	1.230	0.128	2.192	2.715	1.689	2.553	3.684	3.569	2.264	1.142	6.876	7.552	1.178	1.760	3.928	nan	2.949	2.411	1.446	1.921	2.117	2.052	0.594	0.738	3.615	nan	2.360	4.037	0.364	1.225	2.040	2.303	0.663	0.969	1.008	0.271
4866	chr20	17615264	17631752	+	0	NA	intron (NM_004587, intron 4 of 24)	intron (NM_004587, intron 4 of 24)	39420	NM_004587	6238	Hs.472213	NM_004587	ENSG00000125844	RRBP1	ES/130|ES130|RRp|hES	ribosome binding protein 1	protein-coding	1.213	nan	1.829	0.397	0.548	0.360	0.372	0.498	0.127	0.571	0.270	0.431	1.569	0.067	0.046	1.019	1.330	0.372	0.503	3.792	2.931	1.098	0.390	0.636	0.605	0.593	1.029	4.279	4.196	2.351	2.272	0.466	0.580	0.245	0.167	0.710	1.241	3.200	1.986	3.730	1.211	0.064	0.039	0.372	0.431	0.467	1.858	0.073	0.462
4273	chr2	27112530	27145666	+	0	NA	intron (NM_020134, intron 2 of 12)	AluSc|SINE|Alu	57806	NM_001253724	56896	Hs.299315	NM_020134	ENSG00000157851	DPYSL5	CRAM|CRMP-5|CRMP5|Ulip6	dihydropyrimidinase like 5	protein-coding	1.040	0.917	0.823	0.294	0.379	0.217	2.507	0.075	0.058	0.280	0.249	0.429	1.379	0.063	0.114	3.505	3.661	0.432	0.448	1.924	1.705	1.233	0.513	0.480	0.520	0.641	1.021	0.542	nan	0.810	0.716	1.118	1.104	0.195	0.250	0.456	1.182	1.564	0.910	0.738	0.653	0.032	0.769	2.507	0.429	0.367	0.040	0.198	0.320
5439	chr3	99977952	99994582	+	0	NA	intron (NM_001199198, intron 1 of 18)	intron (NM_001199198, intron 1 of 18)	6606	NM_001199198	55773	Hs.477003	NM_018309	ENSG00000036054	TBC1D23	NS4ATP1	TBC1 domain family member 23	protein-coding	2.257	1.867	1.641	0.823	1.167	0.579	0.474	1.062	0.174	1.225	0.640	1.108	1.125	0.495	0.100	0.910	1.107	1.120	1.676	1.455	1.379	2.880	1.004	1.936	2.223	0.941	1.402	1.094	1.375	2.040	1.888	0.607	1.030	0.631	0.564	5.390	9.744	1.901	1.035	0.334	0.446	0.086	0.331	0.474	1.108	0.251	0.355	0.243	5.551
8283	chr9	130417430	130427572	+	0	NA	intron (NM_001032221, intron 5 of 18)	intron (NM_001032221, intron 5 of 18)	30573	NR_037473	100500872		NR_037473	ENSG00000279571	MIR3911	mir-3911	microRNA 3911	ncRNA	nan	0.861	5.427	0.321	0.538	0.372	0.163	0.200	0.162	0.502	0.187	0.474	0.333	0.022	0.080	0.487	1.032	0.271	0.359	2.146	2.265	nan	0.188	0.386	0.346	2.366	2.666	2.760	3.379	8.131	7.424	0.203	0.342	1.213	1.621	2.405	5.118	2.377	1.418	0.098	0.264	0.302	1.700	0.163	0.474	2.344	0.250	0.039	1.012
6834	chr6	65690792	65710098	+	0	NA	intron (NM_001292009, intron 14 of 43)	intron (NM_001292009, intron 14 of 43)	-310866	NM_001271675	441155	Hs.546686	NM_001271675		LOC441155	-	zinc finger CCCH-type domain-containing-like	protein-coding	nan	0.771	0.597	0.208	0.345	0.143	0.238	0.093	0.100	0.137	0.151	0.029	0.308	0.068	0.089	0.442	0.410	0.287	0.312	0.185	0.223	1.147	0.331	0.274	0.266	0.161	0.219	0.305	0.256	0.448	0.165	0.226	0.266	2.317	3.672	0.213	0.541	0.311	0.226	0.021	0.078	0.536	0.111	0.238	0.029	0.030	0.160	0.041	0.051
367	chr1	71889470	71896241	+	0	NA	intron (NM_173808, intron 6 of 6)	intron (NM_173808, intron 6 of 6)	345848	NR_046217	100852410	Hs.535534	NR_046217	ENSG00000229956	ZRANB2-AS2	-	ZRANB2 antisense RNA 2 (head to head)	ncRNA	nan	0.729	0.978	0.455	0.544	0.283	0.272	0.065	0.047	1.203	0.571	0.713	0.326	0.064	0.169	0.555	0.515	0.291	0.273	0.852	nan	10.706	4.673	1.008	0.989	1.009	nan	0.389	0.362	0.529	0.188	0.246	0.414	1.116	0.846	0.615	1.052	1.059	0.606	0.196	0.091	0.111	0.036	0.272	0.713	0.014	0.030	0.130	0.109
6790	chr6	46009902	46020980	+	0	NA	intron (NM_001114086, intron 1 of 5)	Arthur1B|DNA|hAT-Tip100	-31815	NM_016929	53405	Hs.485489	NM_016929	ENSG00000112782	CLIC5	DFNB102|DFNB103|MST130|MSTP130	chloride intracellular channel 5	protein-coding	0.731	0.982	0.610	0.288	0.784	0.262	0.277	0.665	0.101	0.225	0.207	0.119	0.389	0.019	0.137	1.073	1.279	7.642	3.321	0.268	0.426	0.143	0.119	0.945	1.040	0.152	0.269	0.605	nan	0.436	0.168	1.613	3.524	0.179	0.223	0.146	0.285	0.885	0.653	0.030	0.095	0.060	0.044	0.277	0.119		0.019	1.744	0.049
1821	chr12	10544232	10551241	+	0	NA	intron (NM_001199805, intron 4 of 12)	LTR5A|LTR|ERVK	-5083	NM_007360	22914	Hs.387787	NM_007360	ENSG00000213809	KLRK1	CD314|D12S2489E|KLR|NKG2-D|NKG2D	killer cell lectin like receptor K1	protein-coding	1.031	1.576	0.862	0.926	0.213	0.179	0.090	2.173	0.116	1.227	0.658	0.034	0.601	0.093	0.074	0.213	0.283	1.987	3.626	nan	0.410	14.815	7.384	0.451	0.512	0.180	0.261	1.603	1.565	0.335	0.091	0.215	0.339	0.065	0.115	0.200	0.388	0.560	0.380	0.103	0.153	0.014	0.022	0.090	0.034	0.006	1.791	0.100	0.035
5741	chr3	183083670	183103954	+	0	NA	intron (NM_015078, intron 3 of 29)	intron (NM_015078, intron 3 of 29)	52245	NM_015078	23101	Hs.208267	NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding	0.903	1.210	0.780	4.860	6.912	3.655	0.252	0.138	0.143	2.405	1.113	8.612	3.834	0.059	0.096	1.491	1.424	0.421	0.432	4.114	5.570	5.609	1.947	0.370	0.394	0.338	0.494	6.191	6.088	0.762	0.370	0.549	0.923	0.983	0.911	0.241	0.349	3.699	1.698	3.436	1.608	0.160	0.599	0.252	8.612	0.043	0.346	0.336	0.169
5599	chr3	149346365	149364565	+	0	NA	intron (NM_015472, intron 2 of 6)	intron (NM_015472, intron 2 of 6)	20347	NM_001168280	25937	Hs.477921	NM_015472	ENSG00000018408	WWTR1	TAZ	WW domain containing transcription regulator 1	protein-coding	1.034	nan	nan	0.218	0.574	0.264	0.571	0.720	0.205	0.217	0.201	0.086	0.206	0.053	0.075	0.354	0.195	4.272	9.650	0.344	0.307	nan	0.203	0.246	0.185	0.989	nan	0.379	nan	nan	0.242	0.239	0.261	0.050	0.058	0.220	0.282	0.517	0.517	0.040	0.083	0.016	0.052	0.571	0.086	0.016	0.430	0.076	0.116
7756	chr8	74486798	74547561	+	0	NA	intron (NM_001164384, intron 7 of 10)	L1ME3E|LINE|L1	141983	NM_014393	27067	Hs.561815	NM_014393	ENSG00000040341	STAU2	39K2|39K3	staufen double-stranded RNA binding protein 2	protein-coding	1.151	0.805	0.808	0.169	0.438	0.217	0.167	0.539	0.176	0.103	0.139	0.191	0.333	3.013	0.148	0.307	0.208	0.419	0.497	0.446	0.594	0.371	0.167	0.401	0.376	0.543	0.661	0.284	0.298	0.366	0.151	0.271	0.420	0.133	0.190	0.343	0.770	0.889	0.741	0.037	0.154	0.025	0.113	0.167	0.191	0.017	0.115	0.128	0.146
743	chr1	188804060	188815487	+	0	NA	Intergenic	LTR12C|LTR|ERV1	1397013	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA	nan	nan	1.033	0.092	0.306	0.098	0.154	0.128	0.125	0.096	0.130	0.206	0.264	0.038	0.088	0.411	0.230	0.317	0.376	0.463	nan	1.097	0.357	nan	0.314	0.638	0.802	0.451	0.525	6.160	4.443	0.236	0.376	0.161	0.214	0.292	nan	0.317	0.310	0.054	0.102	0.033	0.209	0.154	0.206	0.120	0.027	0.105	0.097
6037	chr4	142251825	142267442	+	0	NA	Intergenic	LOR1-int|LTR|ERV1	-5862	NR_121625	100507639	Hs.535010	NR_121625		LOC100507639	-	uncharacterized LOC100507639	ncRNA	0.917	0.885	0.803	0.135	0.185	0.123	0.073	0.106	0.062	0.051	0.113	0.139	0.233	0.770	0.065	0.214	0.158	0.230	0.527	0.289	0.356	2.077	0.799	0.243	0.222	0.127	0.173	0.480	0.562	0.270	0.119	0.107	0.246	1.495	1.385	2.809	5.878	0.487	0.463	0.003	0.067	0.218	0.021	0.073	0.139	0.013	0.019	0.032	2.051
7342	chr7	79900914	79910167	+	0	NA	Intergenic	AluSx|SINE|Alu	98215	NR_110075	101927269	Hs.583232	NR_110075		LOC101927269	-	uncharacterized LOC101927269	ncRNA	nan	0.748	0.861	0.113	0.274	0.225	1.135	4.772	0.372	0.197	0.245	0.098	0.238	0.528	0.203	1.041	1.003	5.509	nan	0.328	0.389	0.180	0.110	0.188	0.160	0.822	nan	0.431	nan	0.432	0.198	0.225	0.303	0.522	0.586	0.357	0.590	0.588	0.577	0.077	0.077	0.072	0.051	1.135	0.098	0.021	0.088	0.021	0.146
6753	chr6	38176700	38208715	+	0	NA	intron (NM_001099272, intron 9 of 10)	intron (NM_001099272, intron 9 of 10)	-256665	NR_144472	101929425	Hs.665280	NR_144472		BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA	nan	1.100	nan	0.203	1.611	0.789	3.397	0.126	0.136	0.292	0.250	2.324	0.728	0.061	0.114	0.463	0.456	0.214	nan	nan	2.756	4.994	1.307	0.308	0.298	0.707	1.002	0.942	0.965	0.504	0.380	0.319	0.487	1.810	2.097	0.397	0.859	0.827	0.518	0.396	0.869	0.951	0.541	3.397	2.324	0.228	0.247	0.381	0.194
1755	chr12	605537	620857	+	0	NA	intron (NM_173593, intron 1 of 19)	AluSx|SINE|Alu	43654	NM_173593	283358	Hs.504416	NM_173593	ENSG00000139044	B4GALNT3	-	beta-1,4-N-acetyl-galactosaminyltransferase 3	protein-coding	1.212	nan	nan	2.634	0.658	0.257	0.925	0.177	0.158	0.377	0.275	0.812	1.064	0.120	0.116	0.285	0.231	0.405	0.717	nan	0.804	5.638	1.323	0.339	0.450	0.365	0.749	1.993	2.451	0.326	0.224	0.062	0.077	2.588	3.717	0.412	nan	3.395	1.778	0.333	0.278	0.498	1.757	0.925	0.812	0.121	0.086	0.026	0.266
1138	chr10	72834027	72865040	+	0	NA	Intergenic	Intergenic	-122759	NM_001244889	219699	Hs.522997	NM_170744	ENSG00000107731	UNC5B	UNC5H2|p53RDL1	unc-5 netrin receptor B	protein-coding	0.918	nan	0.892	0.048	2.814	1.585	0.161	0.070	0.099	0.111	0.070	0.142	0.322	0.045	0.075	0.594	0.695	0.171	0.277	0.261	0.300	4.447	2.075	0.483	0.464	0.139	0.236	0.681	nan	0.383	0.249	0.569	0.680	0.241	0.220	0.980	nan	0.767	0.518	0.079	0.103	0.067	0.118	0.161	0.142	0.037	0.082	0.221	0.561
488	chr1	144588620	144596098	+	0	NA	intron (NM_001278267, intron 52 of 130)	LTR71B|LTR|ERV1	20360	NR_003242	767846	Hs.657186	NR_003242	ENSG00000270392	PFN1P2	C1orf152|COAS3	profilin 1 pseudogene 2	pseudo	2.918	nan	2.206	1.838	1.697	1.004	1.986	1.743	0.318	0.655	0.694	1.438	11.855	2.027	0.175	1.091	1.487	2.139	2.961	3.363	3.172	1.767	0.420	2.882	2.687	3.023	3.984	2.291	3.075	2.305	2.872	1.921	3.612	1.530	1.341	2.325	3.164	1.945	1.152	0.723	2.368	0.525	0.510	1.986	1.438	0.441	3.036	1.443	1.313
1012	chr10	10565494	10570349	+	0	NA	intron (NM_001326319, intron 1 of 16)	L1MA7|LINE|L1	63443	NM_001326321	10659	Hs.309288	NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR	CUGBP, Elav-like family member 2	protein-coding	nan	0.601	0.481	0.074	0.201	0.296	0.265	0.187	0.191		0.053	0.049	0.277	0.022	0.094	4.181	5.090	11.709	2.362	0.124	0.240	0.542	0.272	0.162	0.069	0.353	0.445	0.086	0.113	0.190	0.060	0.324	0.664	0.044	0.074	0.256	0.378	0.090	0.097	0.023	0.073	0.020	0.032	0.265	0.049			0.061	0.077
1032	chr10	13740034	13761410	+	0	NA	intron (NM_018027, intron 12 of 24)	intron (NM_018027, intron 12 of 24)	-1155	NM_001318338	55691	Hs.330463	NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding	nan	0.633	2.137	0.197	0.238	0.120	0.634	1.149	0.330	0.087	0.073	0.225	0.366	0.031	0.080	0.502	0.698	1.728	4.456	0.399	0.289	1.085	0.461	0.185	0.242	1.323	1.900	0.820	0.854	0.156	0.136	0.178	0.316	0.123	0.237	0.217	0.536	0.458	0.416	0.356	0.066	0.080	0.096	0.634	0.225	0.112	0.029	0.083	0.173
6701	chr6	30836168	30859606	+	0	NA	Intergenic	Intergenic	-2503	NM_001297652	780	Hs.631988	NM_001954	ENSG00000204580	DDR1	CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE	discoidin domain receptor tyrosine kinase 1	protein-coding	nan	2.286	nan	0.979	1.520	0.759	4.363	1.000	0.248	0.382	0.204	2.183	3.898	1.155	0.112	1.947	2.517	4.793	nan	nan	2.315	5.109	1.680	1.026	1.077	1.005	1.691	2.172	2.735	1.032	1.317	0.788	1.574	1.658	1.540	0.579	0.851	1.412	0.846	3.418	2.213	0.491	1.433	4.363	2.183	0.662	1.223	1.134	0.248
4071	chr19	41282296	41285576	+	0	NA	promoter-TSS (NM_016154)	promoter-TSS (NM_016154)	-188	NM_016154	53916	Hs.631539	NM_016154	ENSG00000167578	RAB4B	-	RAB4B, member RAS oncogene family	protein-coding	4.927	3.765	4.806	3.610	6.032	3.287	2.587	2.435	0.294	1.884	0.988	3.213	24.839	4.736	0.141	6.946	6.712	5.991	6.731	10.996	8.696	12.436	6.917	16.751	16.976	5.533	6.464	7.066	10.926	5.957	7.481	5.876	7.572	7.409	5.980	5.026	7.684	4.196	2.295	4.576	6.894	1.098	1.258	2.587	3.213	1.218	3.866	4.623	1.447
6584	chr6	3134441	3164153	+	0	NA	intron (NM_004332, intron 6 of 6)	MIR|SINE|MIR	8486	NM_001069	7280	Hs.654543	NM_001069	ENSG00000137267	TUBB2A	CDCBM5|TUBB|TUBB2	tubulin beta 2A class IIa	protein-coding	1.686	1.634	1.367	0.973	1.924	0.980	1.286	0.537	0.176	1.025	0.629	1.873	0.833	0.792	0.127	1.073	1.481	1.051	1.453	1.524	1.349	3.406	1.156	1.824	1.947	0.665	1.034	2.026	2.403	0.804	0.769	0.680	1.077	1.295	1.376	0.677	1.070	3.215	1.493	0.271	1.449	0.292	0.331	1.286	1.873	0.195	1.818	0.520	0.250
3855	chr18	57562138	57591840	+	0	NA	Intergenic	Intergenic	9797	NM_021127	5366	Hs.96	NM_021127	ENSG00000141682	PMAIP1	APR|NOXA	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	nan	1.579	1.151	1.144	1.064	0.578	1.807	1.237	0.250	0.554	0.292	0.206	2.759	0.475	0.049	0.693	0.720	2.425	3.822	1.831	1.625	6.464	1.805	3.049	3.240	0.766	1.053	3.045	3.777	1.167	1.030	0.483	0.916	2.767	3.747	0.712	1.102	nan	2.094	0.962	1.008	0.492	0.735	1.807	0.206	0.429	1.376	0.566	0.291
342	chr1	62900370	62906796	+	0	NA	intron (NM_003368, intron 1 of 8)	CpG	1200	NM_003368	7398	Hs.35086	NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding	8.271	4.799	nan	6.379	8.532	4.632	4.905	4.085	0.275	3.097	1.425	7.887	12.145	5.549	0.258	7.184	6.608	8.319	11.498	16.983	16.497	9.514	7.382	17.197	18.185	nan	9.041	10.607	15.893	10.682	12.306	5.026	9.946	5.140	5.383	10.830	8.519	3.717	2.158	5.805	5.367	0.923	4.540	4.905	7.887	2.203	2.647	2.368	3.638
4943	chr20	36034282	36051541	+	0	NA	Intergenic	Intergenic	68380	NM_198291	6714	Hs.195659	NM_005417	ENSG00000197122	SRC	ASV|SRC1|THC6|c-SRC|p60-Src	SRC proto-oncogene, non-receptor tyrosine kinase	protein-coding	1.943	1.302	0.935	0.905	1.205	0.695	3.020	0.161	0.119	0.172	0.123	2.073	1.723	0.197	0.088	1.400	1.577	0.423	0.591	5.356	nan	2.121	0.720	0.562	0.677	1.361	2.217	1.119	1.735	2.622	2.743	0.914	0.862	0.449	0.339	0.962	nan	1.339	0.845	1.379	1.006	0.078	0.335	3.020	2.073	0.370	0.259	0.230	0.231
7588	chr8	9753746	9776538	+	0	NA	Intergenic	Intergenic	-4160	NR_029668	406907		NR_029668	ENSG00000253230	MIR124-1	MIR124A|MIR124A1|MIRN124-1|MIRN124A1|mir-124-1	microRNA 124-1	ncRNA	1.056	0.753	0.962	0.104	0.212	0.099	1.282	0.046	0.050	0.228	0.295	0.079	0.121	0.076	0.087	0.335	0.214	0.132	0.282	3.202	2.356	0.095	0.058	0.200	0.265	0.074	0.149	0.152	0.234	nan	7.465	0.137	0.364	0.094	0.109	2.900	7.062	1.058	0.812	0.042	0.308	0.021	0.167	1.282	0.079	0.387	0.040	0.143	3.201
2883	chr15	57486126	57574386	+	0	NA	intron (NM_001306220, intron 4 of 11)	intron (NM_001306220, intron 4 of 11)	18601	NM_207040	6938	Hs.511504	NM_003205	ENSG00000140262	TCF12	CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20	transcription factor 12	protein-coding	0.940	1.049	1.311	1.369	3.325	1.663	0.615	0.743	0.125	1.070	0.778	3.334	5.061	0.066	0.090	0.581	0.597	0.670	0.774	2.308	2.848	2.116	0.789	0.803	0.779	0.787	1.142	4.745	5.410	2.392	1.777	0.804	1.522	2.008	2.534	0.831	1.602	1.535	0.705	0.604	1.013	0.471	0.386	0.615	3.334	0.103	0.555	1.497	0.321
2540	chr14	33400162	33417414	+	0	NA	intron (NM_173159, intron 1 of 11)	intron (NM_173159, intron 1 of 11)	329	NM_173159	64067	Hs.657892	NM_022123	ENSG00000151322	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding	3.467	0.820	2.872	0.564	0.573	0.353	0.810	0.722	0.168	0.592	0.410	2.402	2.283	4.916	0.181	0.189	0.131	0.247	0.391	1.839	1.471	0.732	0.388	0.763	0.700	0.131	0.243	1.167	1.999	1.924	1.822	0.170	0.444	0.349	0.278	0.281	0.526	1.004	0.690	0.114	0.556	0.066	0.868	0.810	2.402	0.028	1.272	0.074	0.071
3793	chr18	47247604	47253528	+	0	NA	Intergenic	Intergenic	89685	NM_006111	10449	Hs.200136	NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding	nan	0.825	0.697	0.111	0.388	0.243	4.009	1.295	0.300	0.052	0.115	0.080	0.377	0.036	0.050	1.281	0.718	9.849	11.445	0.575	0.550	1.288	0.377	1.073	1.246	0.890	1.061	0.201	0.330	0.313	0.144	0.846	0.500	0.093	0.136	0.199	nan	0.771	0.795	0.126	0.135	0.026	0.063	4.009	0.080	0.083	0.035	0.044	0.104
2284	chr13	40939857	40960213	+	0	NA	intron (NR_024506, intron 5 of 5)	intron (NR_024506, intron 5 of 5)	105108	NR_024505	646982	Hs.287664	NR_024505	ENSG00000215483	LINC00598	-	long intergenic non-protein coding RNA 598	ncRNA	0.785	0.666	0.950	0.077	0.143	0.094	0.119	0.088	0.110	0.038	0.051	0.112	0.941	0.051	0.072	0.594	0.607	0.391	0.338	0.491	0.558	0.116	0.103	0.110	0.106	3.561	3.421	0.210	0.175	1.381	1.197	0.226	0.376	0.037	0.032	0.430	0.998	0.151	0.232	1.422	0.092	0.005	0.050	0.119	0.112	0.176	0.233	0.049	0.136
5830	chr4	6987061	7007772	+	0	NA	intron (NM_001330638, intron 3 of 12)	AluSc8|SINE|Alu	8181	NM_001286805	57533	Hs.518611	NM_020773	ENSG00000132405	TBC1D14	-	TBC1 domain family member 14	protein-coding	0.992	0.754	nan	1.119	0.365	0.062	0.418	0.438	0.157	0.531	0.365	0.563	1.251	0.413	0.068	1.840	1.624	3.205	7.776	0.788	0.831	nan	0.539	1.374	1.435	0.396	0.745	1.050	1.653	1.396	1.406	0.877	1.442	0.306	0.411	0.782	1.026	nan	0.860	0.394	1.082	0.050	0.379	0.418	0.563	0.145	0.211	0.566	0.339
64	chr1	8927744	8966353	+	0	NA	Intergenic	AluJr|SINE|Alu	-7897	NM_001428	2023	Hs.517145	NM_001428	ENSG00000074800	ENO1	ENO1L1|HEL-S-17|MPB1|NNE|PPH	enolase 1	protein-coding	2.077	nan	1.945	2.994	1.391	0.811	1.317	1.836	0.670	0.650	0.496	0.376	1.831	0.776	0.120	1.085	1.405	1.674	4.193	2.748	2.399	0.954	0.362	2.658	2.742	2.230	nan	nan	5.887	nan	2.988	0.913	1.746	0.814	0.790	1.829	1.864	1.002	0.724	0.855	0.898	0.183	0.538	1.317	0.376	0.306	1.007	0.600	0.904
4085	chr19	42923169	42954828	+	0	NA	intron (NM_198477, intron 1 of 3)	intron (NM_198477, intron 1 of 3)	-7420	NM_005357	3991	Hs.656980	NM_005357	ENSG00000079435	LIPE	AOMS4|FPLD6|HSL|LHS	lipase E, hormone sensitive type	protein-coding	1.350	2.262	2.598	0.518	1.185	0.481	0.413	0.085	0.122	0.197	0.154	0.468	2.360	0.171	0.127	0.603	0.649	0.502	0.736	0.948	1.032	5.715	1.512	0.419	0.449	0.317	0.620	0.930	1.042	1.222	0.964	0.612	0.690	1.610	1.594	0.348	0.561	3.141	1.540	2.396	0.461	0.431	0.060	0.413	0.468	0.374	0.282	0.157	0.160
5590	chr3	144425244	144429029	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	734969	NM_001134470	205428	Hs.288954	NM_173552	ENSG00000181744	C3orf58	DIA1|GoPro49|HASF	chromosome 3 open reading frame 58	protein-coding	1.143	nan	nan	0.271	1.777	1.272	0.200	0.134	0.042	0.913	0.314	0.095	0.356	0.043	0.079	0.259	0.255	0.339	0.597	0.347	0.430	8.836	13.320	0.305	0.103	0.677	nan	0.368	nan	nan	0.350	0.279	0.301	0.033	0.115	0.371	0.618	1.267	0.754	0.014	0.094		0.329	0.200	0.095			0.052	0.064
45	chr1	6319302	6349902	+	0	NA	intron (NM_181866, intron 8 of 8)	intron (NM_181866, intron 8 of 8)	-13567	NM_207370	387509	Hs.531581	NM_207370	ENSG00000158292	GPR153	PGR1	G protein-coupled receptor 153	protein-coding	2.365	nan	2.385	1.652	0.809	0.403	0.807	0.195	0.063	0.154	0.167	0.638	1.111	0.301	0.109	1.716	2.590	0.461	0.678	1.712	1.532	0.707	0.391	0.909	1.001	0.781	nan	nan	9.310	nan	0.575	1.191	1.929	0.317	0.357	1.084	2.008	0.427	0.415	0.500	1.479	0.031	0.495	0.807	0.638	1.207	1.299	1.423	0.897
5124	chr21	40157733	40188042	+	0	NA	Intergenic	Intergenic	-4344	NM_001256295	2114	Hs.644231	NM_005239	ENSG00000157557	ETS2	ETS2IT1	ETS proto-oncogene 2, transcription factor	protein-coding	nan	0.873	2.602	2.013	1.185	0.503	1.065	0.697	0.112	0.771	0.413	2.458	3.965	0.082	0.082	1.196	1.406	0.717	1.087	2.527	2.562	nan	0.788	0.315	0.349	0.596	nan	5.133	5.798	1.139	1.059	1.999	2.900	0.912	0.833	0.568	0.678	2.927	1.493	0.376	1.905	0.208	0.195	1.065	2.458	0.450	1.875	1.677	0.155
4172	chr2	1708232	1736720	+	0	NA	intron (NM_012293, intron 1 of 22)	intron (NM_012293, intron 1 of 22)	25843	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding	0.425	0.680	0.669	0.055	2.392	1.195	0.491	2.561	0.211	0.995	0.690	2.464	1.068	0.126	0.105	0.196	0.156	0.370	0.875	5.383	4.245	0.889	0.266	0.087	0.088	1.056	1.708	2.782	2.878	0.514	0.402	0.126	0.168	0.304	0.305	0.131	0.176	0.430	0.450	1.082	1.554	0.057	0.033	0.491	2.464	0.651	3.757	0.038	0.033
4426	chr2	88314527	88325308	+	0	NA	Intergenic	Intergenic	-34608	NM_001024457	400966	Hs.728970	NM_001024457	ENSG00000187627	RGPD1	RGP1|RGPD2|RanBP2L2	RANBP2-like and GRIP domain containing 1	protein-coding	nan	1.102	nan	1.282	0.812	0.357	0.723	0.236	0.196	0.498	0.304	1.449	1.801	1.070	0.123	3.393	3.785	2.396	2.587	2.164	2.431	2.789	1.965	8.980	9.556	0.220	0.468	0.197	0.216	2.620	2.445	3.415	3.641	0.659	0.460	3.613	3.665	1.431	1.011	0.564	0.181	0.088	0.305	0.723	1.449	0.354	0.095	1.148	1.159
5334	chr3	16925636	16940003	+	0	NA	intron (NM_001144382, intron 3 of 7)	MIRb|SINE|MIR	6367	NM_001144382	23228	Hs.202010	NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding	nan	1.666	1.565	0.343	0.521	0.323	0.457	0.719	0.113	0.349	0.215	0.577	1.680	0.113	0.057	0.369	0.545	0.879	1.422	1.468	1.462	0.300	0.113	0.783	0.734	1.679	1.966	1.014	1.298	6.823	6.162	0.746	1.224	1.122	0.941	0.939	1.694	1.015	0.717	0.252	1.029	0.252	1.149	0.457	0.577	0.489	0.295	0.348	0.681
6346	chr5	83674138	83688203	+	0	NA	promoter-TSS (NM_005711)	promoter-TSS (NM_005711)	-485	NM_001278642	10085	Hs.482730	NM_005711	ENSG00000164176	EDIL3	DEL1	EGF like repeats and discoidin domains 3	protein-coding	0.827	2.091	1.616	0.402	0.570	0.263	0.117	1.908	0.159	0.112	0.110	0.043	3.980	0.077	0.162	0.233	0.252	0.658	1.566	0.079	0.201	0.867	0.343	0.144	0.165	4.297	4.971	0.579	0.768	3.126	3.240	0.187	0.346	3.182	1.942	3.042	nan	0.962	0.513	0.008	0.115	0.702	0.101	0.117	0.043	0.014	0.660	0.113	2.638
6526	chr5	158486248	158501462	+	0	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	32915	NM_001324101	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding	1.007	nan	1.186	0.063	0.510	0.243	0.783	0.547	0.085	0.370	0.290	0.528	0.314	0.051	0.108	0.796	0.670	0.097	0.104	1.879	2.042	0.068	0.045	0.069	0.058	0.506	0.783	0.088	0.129	1.810	1.519	0.531	0.916	0.159	0.115	1.080	2.822	0.920	0.532	0.694	1.691	0.025	3.222	0.783	0.528	0.158	0.020	1.092	0.492
1173	chr10	86023734	86035061	+	0	NA	Intergenic	MIRc|SINE|MIR	-10339	NR_038220	170425	Hs.434131	NR_038220	ENSG00000229404	LINC00858	-	long intergenic non-protein coding RNA 858	ncRNA	0.651	0.801	0.805	7.326	0.940	0.452	0.226	0.118	0.086	0.427	0.124	0.650	0.518	0.077	0.077	0.364	0.231	0.146	0.308	0.702	0.686	7.125	2.819	0.144	0.190	0.521	0.755	6.224	6.778	0.530	0.481	0.223	0.341	0.237	0.220	0.401	1.212	2.669	1.324	0.185	0.161	0.017	0.007	0.226	0.650	0.087	0.187	0.043	0.295
1963	chr12	54729820	54789377	+	0	NA	intron (NR_120487, intron 1 of 3)	AluJr|SINE|Alu	-1328	NM_020370	53831	Hs.306199	NM_020370	ENSG00000139572	GPR84	EX33|GPCR4	G protein-coupled receptor 84	protein-coding	nan	1.398	1.172	0.817	0.799	0.414	2.633	0.485	0.143	0.963	0.530	1.123	3.449	0.410	0.079	nan	2.202	0.772	1.269	3.781	nan	2.386	1.096	1.006	1.160	0.794	nan	2.388	nan	2.297	1.757	0.607	0.948	2.120	1.907	1.466	4.033	2.599	1.373	0.978	2.273	0.870	1.224	2.633	1.123	0.587	0.906	0.496	1.561
4656	chr2	197813513	197831242	+	0	NA	Intergenic	AluJr4|SINE|Alu	-30922	NM_001321099	80055	Hs.229988	NM_024989	ENSG00000197121	PGAP1	Bst1|ISPD3024|MRT42|SPG67	post-GPI attachment to proteins 1	protein-coding	0.823	nan	1.322	0.684	0.528	0.282	0.368	0.140	0.146	0.678	0.412	1.194	1.650	0.049	0.074	0.421	0.436	0.720	0.732	0.724	0.644	4.691	3.540	0.469	0.493	0.442	0.683	0.757	0.839	0.436	0.283	0.281	0.350	1.124	1.623	0.289	0.442	0.513	0.526	0.079	0.199	0.232	0.255	0.368	1.194	0.060	0.057	0.070	0.092
2085	chr12	94466724	94476809	+	0	NA	Intergenic	L2c|LINE|L2	-70733	NM_005761	10154	Hs.584845	NM_005761	ENSG00000136040	PLXNC1	CD232|PLXN-C1|VESPR	plexin C1	protein-coding	1.101	0.702	0.739	0.106	0.209	0.095	0.232	0.538	0.175	0.125	0.164	0.287	nan	0.066	0.086	0.279	0.249	0.209	0.388	3.074	3.499	0.630	0.264	0.289	0.253	4.712	5.249	0.311	nan	0.738	0.713	0.252	0.251	0.168	0.131	0.897	1.912	0.883	0.913	0.104	0.122	0.140	0.186	0.232	0.287	0.618	0.030	0.064	0.340
1733	chr11	129589560	129611240	+	0	NA	Intergenic	L2b|LINE|L2	-85276	NM_138788	120224	Hs.504301	NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding	0.517	1.305	1.319	0.303	0.678	0.322	0.094	0.044	0.059	0.138	0.137	0.845	0.991	0.100	0.102	0.456	0.551	0.236	0.505	1.125	1.013	0.248	0.083	0.379	0.396	0.157	0.342	2.396	1.949	0.774	0.952	0.649	0.769	0.247	0.188	0.077	nan	1.114	0.601	3.751	0.937	0.031	0.037	0.094	0.845	0.009	0.216	0.379	0.046
6943	chr6	124308188	124338042	+	0	NA	intron (NM_153355, intron 1 of 5)	L2c|LINE|L2	198124	NM_001040214	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding	0.729	0.948	0.927	1.553	5.402	2.668	0.141	0.115	0.098	0.518	0.333	1.187	0.721	0.033	0.122	0.502	0.437	0.872	0.383	0.963	1.089	3.787	1.131	5.343	5.522	0.418	0.576	2.517	2.341	0.464	0.169	0.111	0.260	2.494	2.707	0.199	0.237	0.487	0.369	0.832	3.677	0.501	0.069	0.141	1.187	0.036	0.431	0.046	0.038
5028	chr20	59277148	59282084	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	139996	NR_039653	100616440		NR_039653	ENSG00000265617	MIR548AG2	-	microRNA 548ag-2	ncRNA	0.667	1.055	0.514	0.089	0.144	0.032	0.025	0.075	0.097	0.051	0.082	0.002	0.343	0.022	0.133	1.655	nan	0.055	0.052	0.199	0.358	0.223	0.149	19.421	21.560	0.198	0.242	0.131	0.162	0.469	0.160	0.225	0.250	0.018	0.042	0.160	0.302	0.780	0.688	0.055	0.072		0.016	0.025	0.002	0.059	0.062	0.052	0.101
2113	chr12	104317604	104327342	+	0	NA	intron (NR_027249, intron 1 of 15)	intron (NR_027249, intron 1 of 15)	1516	NR_027249	253724	Hs.506549	NR_027249	ENSG00000214198	TTC41P	GNN|GNNP	tetratricopeptide repeat domain 41, pseudogene	pseudo	2.705	2.102	nan	3.133	2.446	1.406	1.780	1.767	0.362	1.577	0.975	2.319	7.979	2.685	0.152	3.467	3.193	3.550	3.454	4.611	4.127	9.256	6.145	7.469	7.648	3.172	3.918	4.424	10.112	2.765	4.274	2.398	4.692	5.532	5.757	5.960	3.286	3.367	1.913	1.388	2.370	0.949	1.114	1.780	2.319	0.660	1.700	1.484	1.024
2153	chr12	115337799	115366112	+	0	NA	Intergenic	Intergenic	-229986	NM_005996	6926	Hs.744016	NM_005996	ENSG00000135111	TBX3	TBX3-ISO|UMS|XHL	T-box 3	protein-coding	nan	nan	0.449	0.198	0.368	0.234	0.457	0.069	0.103	0.034	0.082	0.276	0.766	0.065	0.102	0.749	0.910	0.165	0.198	nan	nan	nan	0.052	7.544	8.110	0.129	0.271	nan	nan	0.230	0.064	1.004	1.119	0.145	0.176	0.393	0.760	nan	0.267	3.019	0.468	0.024	0.017	0.457	0.276	0.010	0.115	0.730	0.314
3383	chr17	36896884	36910477	+	0	NA	intron (NM_007144, intron 2 of 10)	intron (NM_007144, intron 2 of 10)	878	NM_007144	7703	Hs.371617	NM_007144	ENSG00000277258	PCGF2	MEL-18|RNF110|ZNF144	polycomb group ring finger 2	protein-coding	nan	3.784	2.493	2.021	7.734	3.950	4.191	2.000	0.418	2.570	1.799	6.116	16.055	4.249	0.113	4.200	6.618	3.923	5.082	nan	6.911	6.392	2.385	8.005	8.541	3.440	5.063	7.276	9.814	nan	7.747	1.753	3.478	4.285	3.519	3.264	5.963	3.347	1.594	5.261	3.668	1.508	1.915	4.191	6.116	1.513	3.067	1.827	2.334
6534	chr5	162929380	162939745	+	0	NA	intron (NM_013283, intron 1 of 6)	intron (NM_013283, intron 1 of 6)	2028	NM_013283	27430	Hs.54642	NM_013283	ENSG00000038274	MAT2B	MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR	methionine adenosyltransferase 2B	protein-coding	nan	1.606	1.970	1.162	1.168	0.589	0.735	1.939	0.175	0.360	0.305	1.062	3.013	3.625	0.141	1.160	1.150	6.522	13.574	1.353	1.358	1.925	0.597	1.767	1.736	0.969	1.304	1.618	2.714	2.180	1.983	0.936	1.818	2.422	2.372	2.247	2.928	0.913	0.428	0.465	0.923	0.414	0.978	0.735	1.062	0.225	1.059	0.780	0.700
120	chr1	19564204	19580400	+	0	NA	intron (NM_015047, intron 1 of 22)	AluSq10|SINE|Alu	5751	NM_001271429	23065	Hs.439200	NM_015047	ENSG00000127463	EMC1	CAVIPMR|KIAA0090	ER membrane protein complex subunit 1	protein-coding	2.290	1.190	nan	1.663	1.277	0.604	1.282	0.516	0.139	0.445	0.335	0.407	1.759	1.080	0.096	2.026	2.046	1.904	2.688	2.688	3.010	1.708	0.734	3.152	nan	1.713	nan	2.111	2.780	nan	4.051	1.149	1.800	0.843	1.037	3.712	5.690	1.538	0.882	0.660	0.802	0.105	0.491	1.282	0.407	0.456	0.614	0.268	1.805
2568	chr14	38050915	38070284	+	0	NA	exon (NM_004496, exon 2 of 2)	exon (NM_004496, exon 2 of 2)	3726	NM_004496	3169	Hs.163484	NM_004496	ENSG00000129514	FOXA1	HNF3A|TCF3A	forkhead box A1	protein-coding	8.583	8.373	6.232	9.407	4.572	2.552	1.266	0.112	0.117	3.670	1.887	4.786	21.177	1.275	0.112	0.347	0.384	5.308	7.510	9.447	8.205	8.474	3.424	1.898	2.042	2.523	3.065	7.086	10.806	2.044	2.247	2.119	4.689	12.056	10.026	1.643	2.017	3.808	2.353	7.430	11.064	3.486	3.329	1.266	4.786	0.718	3.799	2.196	0.630
7238	chr7	30503652	30519261	+	0	NA	intron (NM_006092, intron 1 of 13)	intron (NM_006092, intron 1 of 13)	6937	NM_006092	10392	Hs.405153	NM_006092	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1	nucleotide binding oligomerization domain containing 1	protein-coding	3.932	2.655	2.733	1.217	0.849	0.462	0.518	0.739	0.135	0.457	0.359	2.274	2.217	1.301	0.175	0.993	1.294	0.875	1.318	1.309	nan	1.232	0.392	1.490	1.653	2.369	nan	nan	nan	3.520	3.516	1.090	2.125	1.096	1.177	0.925	nan	2.130	1.283	0.642	0.587	0.225	0.352	0.518	2.274	0.315	0.725	1.494	0.554
2841	chr15	36642622	36707752	+	0	NA	Intergenic	AluSg|SINE|Alu	-196617	NM_001321756	84529	Hs.48348	NM_032499	ENSG00000186073	C15orf41	HH114	chromosome 15 open reading frame 41	protein-coding	0.735	nan	nan	0.124	0.250	0.099	0.477	0.885	0.119	0.116	0.138	0.046	0.276	5.308	0.150	0.362	0.210	0.238	0.754	0.245	0.314	0.102	0.063	0.107	0.133	0.700	0.909	0.220	0.252	0.718	0.398	0.148	0.220	0.543	1.052	0.238	0.410	0.351	0.420	0.044	0.137	0.146	0.106	0.477	0.046	0.052	0.023	0.034	0.057
7773	chr8	83748265	83760188	+	0	NA	Intergenic	Intergenic	-70113	NR_134295	101927141	Hs.128557	NR_134295	ENSG00000254394	LOC101927141	-	uncharacterized LOC101927141	ncRNA	1.207	nan	nan	1.598	5.060	2.707	0.113	0.193	0.068	0.643	0.223	2.764	0.442	0.039	0.088	0.741	0.537	0.895	0.387	2.808	3.336	5.044	2.305	0.323	0.272	1.340	1.543	nan	5.850	1.157	0.716	0.311	0.597	2.321	1.965	0.928	1.764	6.203	2.769	0.060	0.075	0.328	0.159	0.113	2.764	0.024	2.045	0.125	0.224
6280	chr5	58834089	58846665	+	0	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	41947	NM_006203	5144	Hs.117545	NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding	nan	nan	2.090	0.286	1.023	0.650	0.825	0.154	0.064	0.936	0.522	0.570	0.653	0.273	0.130	0.188	0.188	0.405	1.040	0.303	0.371	nan	1.774	0.284	0.282	1.554	2.002	2.398	3.320	nan	0.222	0.057	0.084	3.771	4.498	0.394	1.028	0.797	0.532	1.289	0.120	0.749	0.031	0.825	0.570	0.016	1.057	0.008	0.279
4670	chr2	202898486	202908813	+	0	NA	TTS (NM_003507)	TTS (NM_003507)	4339	NM_003507	8324	Hs.173859	NM_003507	ENSG00000155760	FZD7	FzE3	frizzled class receptor 7	protein-coding	2.806	nan	3.999	0.750	0.278	0.233	1.140	1.015	0.078	0.111	0.103	0.208	2.633	0.753	0.110	0.305	0.301	0.432	0.887	0.640	0.570	0.134	0.045	0.771	0.751	2.844	4.571	0.874	1.220	6.568	5.460	0.346	0.726	0.599	0.550	0.795	2.004	0.454	0.348	0.156	0.077	0.184	0.438	1.140	0.208	1.253	0.069	0.076	0.723
2442	chr13	110430072	110449604	+	0	NA	promoter-TSS (NM_003749)	promoter-TSS (NM_003749)	-924	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding	1.339	nan	2.996	4.463	1.876	0.955	1.312	0.088	0.074	0.612	0.232	1.740	4.138	2.375	0.114	0.975	1.825	0.820	1.630	3.345	2.747	2.891	1.058	0.842	0.660	0.120	0.237	2.537	4.263	1.727	2.259	3.775	7.474	0.667	0.637	1.100	1.319	0.568	0.347	2.554	2.573	0.106	2.661	1.312	1.740	0.342	3.948	1.967	0.459
1987	chr12	59675021	59690125	+	0	NA	Intergenic	Intergenic	-307248	NM_001270622	9194	Hs.88156	NM_004731	ENSG00000118596	SLC16A7	MCT2	solute carrier family 16 member 7	protein-coding	nan	0.632	0.477	0.214	0.172	0.117	0.161	0.120	0.043	0.094	0.170	0.064	0.343	0.043	0.099	nan	0.198	0.173	0.223	0.173	nan	8.439	2.494	0.452	0.410	0.184	nan	0.720	nan	0.412	0.179	0.126	0.192	0.106	0.193	0.112	0.182	0.618	0.577	0.007	0.108	0.006	0.111	0.161	0.064	0.084	0.034	0.054	0.016
4920	chr20	31193027	31227421	+	0	NA	Intergenic	Intergenic	29559	NM_182584	284805	Hs.353262	NM_182584		C20orf203	-	chromosome 20 open reading frame 203	protein-coding	1.777	3.122	1.472	1.291	0.821	0.486	0.999	0.126	0.098	0.719	0.336	0.470	2.222	0.138	0.098	1.346	1.997	0.210	0.324	1.286	nan	3.999	1.402	0.674	0.752	0.405	0.649	3.420	3.211	2.234	2.112	0.837	1.002	1.481	1.303	0.498	nan	1.320	0.725	2.724	2.908	0.229	0.145	0.999	0.470	0.506	1.259	0.557	0.115
5931	chr4	71567644	71576298	+	0	NA	intron (NM_001130709, intron 1 of 11)	intron (NM_001130709, intron 1 of 11)	1317	NM_001130709	22902	Hs.740904	NM_014961	ENSG00000018189	RUFY3	RIPX|SINGAR1|ZFYVE30	RUN and FYVE domain containing 3	protein-coding	3.017	2.144	2.007	4.293	3.485	1.832	2.704	0.972	0.262	0.904	0.375	2.477	6.072	2.073	0.131	4.143	4.893	2.809	4.705	4.308	3.494	7.352	2.737	5.507	6.108	1.246	1.875	7.264	11.018	3.513	3.242	1.806	4.982	0.279	0.512	3.375	3.681	1.280	0.724	2.323	5.322	0.033	2.135	2.704	2.477	0.370	2.725	1.737	1.216
4911	chr20	30604985	30613352	+	0	NA	intron (NM_080625, intron 5 of 8)	intron (NM_080625, intron 5 of 8)	10923	NM_080625	140706	Hs.382151	NM_080625	ENSG00000101331	CCM2L	C20orf160|dJ310O13.5	CCM2 like scaffolding protein	protein-coding	2.937	2.410	2.473	1.601	0.868	0.471	0.383	0.080	0.058	0.666	0.286	0.871	4.584	0.737	0.163	3.838	4.836	2.013	1.516	2.350	nan	8.388	2.727	0.861	0.817	1.484	1.824	3.178	4.695	3.513	3.730	1.310	1.710	2.166	2.071	1.892	nan	0.920	0.608	1.073	2.220	0.805	1.066	0.383	0.871	1.558	0.416	0.543	0.959
2602	chr14	56577546	56620445	+	0	NA	intron (NM_021255, intron 1 of 5)	MIRb|SINE|MIR	13902	NM_021255	57161	Hs.657926	NM_021255	ENSG00000139946	PELI2	-	pellino E3 ubiquitin protein ligase family member 2	protein-coding	3.930	nan	4.436	1.130	1.288	0.650	1.256	0.479	0.142	0.438	0.303	1.153	1.479	0.053	0.120	1.351	1.783	1.163	1.445	2.008	1.726	1.091	0.379	6.234	6.194	0.138	0.220	1.695	2.164	4.426	4.516	1.269	2.553	1.203	1.362	7.682	15.331	nan	0.736	0.691	1.372	0.270	0.635	1.256	1.153	0.425	0.959	1.162	4.996
399	chr1	89988469	89999247	+	0	NA	intron (NM_001134476, intron 2 of 7)	intron (NM_001134476, intron 2 of 7)	3461	NM_001134476	23507	Hs.482017	NM_015350	ENSG00000197147	LRRC8B	TA-LRRP|TALRRP	leucine rich repeat containing 8 family member B	protein-coding	3.462	nan	nan	3.029	1.924	1.210	1.612	1.936	0.182	1.120	0.266	1.931	5.185	1.272	0.114	3.294	3.587	2.618	3.084	4.765	3.350	6.026	2.836	7.483	7.251	2.779	3.819	6.487	9.411	3.404	3.481	1.666	3.280	3.131	2.636	4.403	5.529	2.325	1.402	2.202	1.739	0.582	1.606	1.612	1.931	0.747	1.435	1.455	2.334
436	chr1	108064618	108105384	+	0	NA	Intergenic	Intergenic	146125	NM_001079874	10451	Hs.267659	NM_006113	ENSG00000134215	VAV3	-	vav guanine nucleotide exchange factor 3	protein-coding	1.369	nan	nan	0.361	0.307	0.161	0.245	0.228	0.079	0.154	0.088	0.047	2.723	0.037	0.080	0.340	0.248	0.753	1.152	0.961	nan	2.366	0.424	0.280	0.321	4.652	5.120	nan	nan	1.366	1.114	0.165	0.227	0.477	0.544	0.415	nan	0.907	0.622	5.334	0.198	0.093	0.177	0.245	0.047	0.567	0.306	0.039	0.353
7837	chr8	102108281	102132224	+	0	NA	Intergenic	Intergenic	55970	NR_033962	441374	Hs.652045	NR_033962	ENSG00000248599	FLJ42969	-	uncharacterized LOC441374	ncRNA	2.088	nan	nan	0.524	0.485	0.238	0.773	1.041	0.207	0.074	0.106	0.590	0.808	0.073	0.067	1.798	2.418	3.599	5.231	1.547	1.360	nan	1.043	5.934	6.198	0.724	nan	2.203	nan	nan	0.234	1.581	2.051	1.300	1.859	0.354	nan	2.487	1.316	2.568	0.207	0.187	0.115	0.773	0.590	0.238	0.901	0.970	0.097
213	chr1	37225460	37248982	+	0	NA	Intergenic	Intergenic	262623	NM_000831	2899	Hs.128848	NM_000831	ENSG00000163873	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	glutamate ionotropic receptor kainate type subunit 3	protein-coding	1.424	nan	1.297	0.190	0.721	0.449	0.249	0.074	0.027	0.187	0.190	0.711	1.462	0.074	0.080	0.250	0.189	0.099	0.152	0.549	0.611	nan	0.704	0.159	0.139	1.640	2.153	21.645	17.229	nan	0.690	0.581	0.798	0.369	0.773	1.198	4.929	0.958	nan	0.238	0.178	0.125	0.247	0.249	0.711	0.229	0.186	0.154	1.963
5114	chr21	38024241	38029656	+	0	NA	Intergenic	Intergenic	-44485	NM_005069	6493	Hs.146186	NM_005069	ENSG00000159263	SIM2	HMC13F06|HMC29C01|SIM|bHLHe15	single-minded family bHLH transcription factor 2	protein-coding	0.714	0.498	0.843		0.261	0.114	0.235	0.049		0.028	0.014	0.155	0.353	0.120	0.044	9.719	11.159	17.094	8.451	0.316	0.461	0.337	0.078	2.361	2.542	0.185	0.416	0.212	0.318	0.351	0.189	2.746	6.112	0.031	0.056	0.245	0.450	nan	0.644	0.031	0.097	0.018	0.071	0.235	0.155	0.018	0.038	1.832	0.090
6424	chr5	121719667	121745750	+	0	NA	intron (NM_001308107, intron 2 of 8)	MIR|SINE|MIR	5924	NM_001308108	9627	Hs.426463	NM_005460	ENSG00000064692	SNCAIP	SYPH1|Sph1	synuclein alpha interacting protein	protein-coding	nan	0.897	1.344	0.320	1.252	0.543	0.147	0.085	0.062	0.210	0.144	0.375	0.958	0.039	0.134	0.186	0.202	0.225	nan	0.502	0.665	0.536	0.163	0.401	0.376	2.619	3.617	0.814	0.623	0.461	0.283	0.095	0.125	2.370	3.102	0.246	0.392	1.121	0.627	0.213	0.779	0.806	0.738	0.147	0.375	0.048	0.361	0.031	0.066
8030	chr9	6218942	6229639	+	0	NA	intron (NM_001314048, intron 1 of 6)	intron (NM_001314048, intron 1 of 6)	8504	NM_001199640	90865	Hs.731660	NM_033439	ENSG00000137033	IL33	C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV	interleukin 33	protein-coding	0.589	1.584	0.594	0.171	0.216	0.149	0.192	1.648	0.256	0.110	0.188	0.199	0.313	0.030	0.078	0.499	0.512	5.992	1.169	0.286	0.319	0.321	0.160	0.333	0.376	0.327	0.651	0.153	0.287	0.360	0.160	0.206	0.360	0.108	0.123	0.132	nan	1.294	1.179	0.010	0.050		0.023	0.192	0.199	0.010	0.019	0.084	0.046
5597	chr3	149079039	149115056	+	0	NA	intron (NR_109810, intron 1 of 1)	intron (NR_109810, intron 1 of 1)	-1479	NM_014220	4071	Hs.351316	NM_014220	ENSG00000169908	TM4SF1	H-L6|L6|M3S1|TAAL6	transmembrane 4 L six family member 1	protein-coding	0.977	nan	nan	1.221	0.845	0.421	0.408	1.805	0.205	1.047	0.714	0.477	1.775	0.045	0.069	0.473	0.397	2.264	4.457	0.617	0.567	nan	1.131	0.409	0.424	0.396	nan	1.192	nan	nan	0.303	0.892	1.817	1.480	2.720	0.310	0.520	1.043	0.735	0.132	0.160	0.330	0.092	0.408	0.477	0.008	1.111	0.915	0.117
1450	chr11	62471831	62482339	+	0	NA	promoter-TSS (NR_037948)	promoter-TSS (NR_037948)	6	NR_037948	26580	Hs.533709	NM_032667	ENSG00000168000	BSCL2	GNG3LG|HMN5|PELD|SPG17	BSCL2, seipin lipid droplet biogenesis associated	protein-coding	nan	2.516	1.834	3.808	2.412	1.556	3.334	0.654	0.095	1.374	0.765	3.189	7.048	1.956	0.171	6.402	5.757	3.225	4.542	7.066	6.930	7.287	3.313	1.030	0.982	1.482	1.881	5.122	7.311	2.265	1.896	3.441	4.210	4.257	5.123	2.419	2.682	3.218	1.648	4.549	3.145	0.946	1.902	3.334	3.189	0.984	2.434	2.365	0.324
4818	chr20	4005998	4023397	+	0	NA	Intergenic	SVA_E|Other|Other	-18459	NM_001321749	11237	Hs.547576	NM_007219	ENSG00000101236	RNF24	G1L	ring finger protein 24	protein-coding	1.298	2.756	1.607	0.496	0.246	0.249	0.245	0.292	0.092	0.135	0.220	0.206	1.642	0.113	0.094	3.527	5.257	1.140	2.556	0.496	0.572	0.344	0.103	0.589	0.683	1.001	1.495	1.324	1.934	0.999	0.619	1.350	1.495	0.610	0.719	1.250	2.852	0.732	0.521	0.310	0.610	0.218	0.073	0.245	0.206	0.676	0.240	0.758	1.253
3011	chr16	499142	509077	+	0	NA	intron (NM_014700, intron 1 of 13)	intron (NM_014700, intron 1 of 13)	-20741	NM_001142272	9727	Hs.531642	NM_014700	ENSG00000090565	RAB11FIP3	CART1|Rab11-FIP3	RAB11 family interacting protein 3	protein-coding	0.879	nan	2.295	1.465	1.529	0.968	0.911	0.292	0.202	0.412	0.374	5.179	2.472	0.163	0.140	1.741	2.129	0.819	0.936	1.918	1.630	nan	0.794	1.356	1.449	0.809	nan	2.870	3.170	0.576	0.472	0.780	1.053	1.605	1.290	0.417	0.628	1.041	0.622	2.678	1.982	0.354	2.526	0.911	5.179	0.236	0.336	0.663	0.235
3250	chr17	4869496	4874161	+	0	NA	promoter-TSS (NM_004890)	promoter-TSS (NM_004890)	-696	NM_004890	9552	Hs.90436	NM_004890	ENSG00000091640	SPAG7	ACRP|FSA-1	sperm associated antigen 7	protein-coding	4.172	2.193	3.386	2.635	4.232	2.733	5.410	1.625	0.171	1.150	0.582	4.343	7.543	4.763	0.129	7.247	9.838	5.056	8.518	6.089	5.722	6.445	2.188	8.523	10.021	3.130	4.120	8.677	9.731	4.198	3.400	2.879	4.892	2.478	2.304	4.128	8.228	1.999	0.840	8.504	3.336	0.610	1.579	5.410	4.343	1.082	6.937	2.337	3.145
3098	chr16	28623127	28643190	+	0	NA	intron (NM_177536, intron 1 of 5)	intron (NM_177536, intron 1 of 5)	1749	NM_177536	6817	Hs.567342	NM_001055	ENSG00000196502	SULT1A1	HAST1/HAST2|P-PST|PST|ST1A1|ST1A3|STP|STP1|TSPST1	sulfotransferase family 1A member 1	protein-coding	0.808	1.325	nan	0.962	0.714	0.344	0.217	0.092	0.139	0.515	0.365	0.679	0.840	0.081	0.083	0.534	0.532	0.365	0.640	0.966	0.913	nan	1.132	0.738	0.772	0.169	0.358	1.933	2.912	0.686	0.688	0.547	0.716	0.552	0.400	0.317	0.609	0.909	0.657	0.296	0.412	0.057	0.091	0.217	0.679	0.257	0.596	0.226	0.130
2411	chr13	102520448	102529875	+	0	NA	intron (NM_001321939, intron 1 of 3)	intron (NM_001321939, intron 1 of 3)	43834	NM_004115	2259	Hs.508616	NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding	0.683	0.986	0.625	1.308	2.485	1.347	0.488	0.054	0.051	0.672	0.449	0.424	1.805	0.012	0.087	1.116	0.647	1.947	2.415	0.759	0.837	4.914	4.872	0.715	0.659	0.670	nan	0.732	1.401	0.354	0.129	0.160	0.278	0.437	0.783	0.249	nan	0.798	0.593	0.371	2.234	0.040	0.075	0.488	0.424	0.020	1.513	0.042	0.066
3905	chr18	74764264	74771341	+	0	NA	intron (NM_001025100, intron 3 of 3)	intron (NM_001025100, intron 3 of 3)	-38747	NM_001025092	4155	Hs.551713	NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding	nan	nan	0.919	0.840	1.485	0.633	1.279	0.603	0.226	0.730	0.247	2.816	0.480	0.015	0.082	0.799	1.559	0.555	1.094	2.980	nan	5.380	1.469	2.098	1.882	0.283	0.438	6.314	nan	0.740	0.939	0.245	0.424	1.881	1.597	0.088	0.109	0.919	0.568	0.409	0.981	0.229	1.464	1.279	2.816	0.439	4.538	0.069	
1129	chr10	65457820	65480895	+	0	NA	Intergenic	Intergenic	-187522	NM_001322258	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding	1.121	nan	1.298	0.735	1.417	0.773	0.962	2.242	0.146	1.125	0.426	0.316	4.239	0.057	0.090	0.435	0.467	0.757	1.600	0.673	0.687	2.063	0.392	0.363	0.388	1.308	1.607	2.220	1.665	0.503	0.477	0.185	0.307	1.401	1.347	0.346	nan	2.225	1.088	5.120	1.061	0.483	0.086	0.962	0.316	0.101	3.784	0.180	0.289
1143	chr10	73827801	73841757	+	0	NA	intron (NM_014767, intron 2 of 11)	intron (NM_014767, intron 2 of 11)	13752	NM_001244950	9806	Hs.523009	NM_014767	ENSG00000107742	SPOCK2	testican-2	SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2	protein-coding	1.235	nan	0.983	0.044	0.376	0.195	0.220	0.106	0.034	0.423	0.209	0.216	0.333	0.016	0.075	0.715	1.732	0.241	0.426	0.636	0.696	6.021	1.725	0.284	0.368	0.571	0.915	0.425	nan	0.826	1.029	0.338	0.357	0.508	0.410	0.444	nan	0.741	0.625	0.255	0.205	0.231	0.187	0.220	0.216	0.587	0.043	0.241	0.217
7178	chr7	15592895	15603249	+	0	NA	intron (NM_001004320, intron 2 of 12)	intron (NM_001004320, intron 2 of 12)	3568	NM_001004320	392636	Hs.670634	NM_001004320	ENSG00000187546	AGMO	TMEM195	alkylglycerol monooxygenase	protein-coding	nan	1.113	nan	0.111	0.451	0.312	4.449	0.573	0.109	2.132	1.616	0.443	0.523	0.125	0.133	nan	0.354	0.257	0.388	0.563	0.794	7.811	3.782	0.446	0.429	0.924	1.024	1.208	0.802	1.162	0.853	0.076	0.150	0.925	0.711	0.719	2.077	2.939	1.139	0.011	0.042	0.256	0.115	4.449	0.443	0.075	2.109	0.029	0.215
6964	chr6	129952411	129969054	+	0	NA	intron (NM_033515, intron 2 of 14)	intron (NM_033515, intron 2 of 14)	70638	NM_033515	93663	Hs.486458	NM_033515	ENSG00000146376	ARHGAP18	MacGAP|SENEX|bA307O14.2	Rho GTPase activating protein 18	protein-coding	0.998	1.037	0.760	0.102	0.103	0.049	0.258	1.464	0.117	0.132	0.084	0.050	0.253	0.052	0.120	0.494	0.371	0.546	1.857	0.205	0.298	6.269	2.329	0.377	0.291	0.517	0.754	0.256	0.258	0.788	0.383	0.154	0.271	2.368	3.698	0.299	0.523	0.558	0.390	0.027	0.108	0.567	0.062	0.258	0.050	0.053	0.623	0.043	0.089
2848	chr15	39612422	39620797	+	0	NA	Intergenic	Intergenic	73739	NM_001302797	400360	Hs.376109	NM_207445		C15orf54	-	chromosome 15 open reading frame 54	ncRNA	0.806	nan	nan	0.062	0.239	0.153	0.093	0.230	0.137	0.058	0.171	0.361	0.229		0.112	3.586	3.596	7.536	5.151	0.293	0.310	0.145	0.104	0.377	0.217	0.274	0.556	0.249	0.237	0.761	0.531	2.592	3.366	0.116	0.175	0.281	0.610	0.444	0.347	0.013	0.086	0.022	0.228	0.093	0.361	0.057	0.049	2.304	0.281
6802	chr6	51082588	51087552	+	0	NA	Intergenic	Intergenic	298631	NM_003221	7021	Hs.33102	NM_003221	ENSG00000008196	TFAP2B	AP-2B|AP2-B|PDA2	transcription factor AP-2 beta	protein-coding	0.848	0.849	nan	0.175	0.387	0.227	0.077	0.091	0.096	0.062	0.113	0.749	0.497	0.033	0.090	2.180	1.970	9.790	8.384	0.320	0.426	0.127	0.108	2.363	2.414	0.138	0.323	0.216	0.257	0.109	0.048	0.367	0.913	0.344	0.445	0.348	0.405	0.183	0.292	0.044	0.035	0.076	0.109	0.077	0.749	0.038	0.020	0.371	0.150
1961	chr12	54647665	54663691	+	0	NA	intron (NM_012117, intron 1 of 4)	intron (NM_012117, intron 1 of 4)	-2308	NM_001127321	23468	Hs.349283	NM_012117	ENSG00000094916	CBX5	HEL25|HP1|HP1A	chromobox 5	protein-coding	nan	1.765	1.363	0.128	1.148	0.504	1.950	1.713	0.342	1.229	0.810	1.373	1.888	0.426	0.084	nan	2.432	0.750	1.668	2.165	nan	3.932	2.119	0.594	0.555	2.323	nan	2.378	nan	4.896	3.878	0.698	1.207	3.228	3.345	3.291	8.668	2.461	1.167	0.356	1.169	1.093	1.177	1.950	1.373	0.545	1.148	0.635	3.415
386	chr1	85688324	85698468	+	0	NA	Intergenic	L1ME3C|LINE|L1	-26668	NM_032184	84144	Hs.533853	NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding	1.164	nan	nan	4.109	0.480	0.270	0.087	0.163	0.064	0.143	0.132	3.129	4.007	2.086	0.141	0.336	0.447	0.434	1.463	1.979	1.863	3.638	1.428	1.023	1.002	0.419	0.710	8.745	11.739	0.446	0.188	1.355	1.807	0.281	0.228	0.472	0.979	0.990	0.628	2.520	0.772	0.009	0.223	0.087	3.129	0.028	0.313	0.908	0.181
6256	chr5	51105344	51110450	+	0	NA	Intergenic	Intergenic	-428731	NR_046243	642366	Hs.544139	NR_046243		LOC642366	-	uncharacterized LOC642366	ncRNA	nan	nan	0.787	0.070	0.315	0.222	0.200	0.087	0.062	0.080	0.175	0.187	0.412	0.127	0.053	0.382	0.258	8.448	5.773	0.395	0.630	nan	0.472	0.119	0.136	0.263	0.322	0.154	0.139	nan	0.370	0.101	0.078	0.228	0.498	0.169	0.174	0.295	0.389	0.152	0.088	0.018	2.565	0.200	0.187	0.037	0.080	0.020	0.024
1457	chr11	63885082	63921278	+	0	NA	intron (NM_014067, intron 3 of 10)	intron (NM_014067, intron 3 of 10)	30405	NM_014067	28992	Hs.602898	NM_014067	ENSG00000133315	MACROD1	LRP16	MACRO domain containing 1	protein-coding	nan	1.582	1.030	0.829	0.925	0.367	1.080	0.148	0.089	0.303	0.269	0.486	3.101	0.132	0.086	1.106	2.024	0.369	0.570	1.459	1.462	0.751	0.345	0.537	0.594	1.247	1.892	1.621	2.001	2.930	3.057	0.767	1.087	0.712	0.658	0.980	2.879	1.255	0.702	6.841	1.230	0.153	0.091	1.080	0.486	0.885	0.239	0.584	0.668
1261	chr10	133021984	133038350	+	0	NA	intron (NM_174937, intron 4 of 11)	intron (NM_174937, intron 4 of 11)	79817	NM_174937	256536	Hs.126575	NM_174937	ENSG00000176769	TCERG1L	-	transcription elongation regulator 1 like	protein-coding	0.523	0.646	0.630	0.102	3.779	1.803	0.187	0.037	0.019	0.172	0.186	1.405	0.324	0.007	0.067	0.210	0.091	0.054	0.086	0.484	0.571	1.596	0.658	0.048	0.067	0.065	0.118	0.471	0.526	0.139	0.105	0.174	0.243	0.732	0.622	0.090	0.087	1.259	0.721	0.292	0.163	0.228	0.010	0.187	1.405	0.218	0.013	0.054	0.053
5155	chr21	44919963	44938889	+	0	NA	Intergenic	Intergenic	-30012	NR_136540	102724354	Hs.592161	NR_136540	ENSG00000280191	LINC01669	-	long intergenic non-protein coding RNA 1669	ncRNA	nan	1.634	2.899	0.541	0.984	0.526	0.517	0.527	0.137	0.290	0.158	1.650	2.969	0.057	0.072	0.952	1.775	0.734	1.952	1.782	1.850	nan	0.921	0.694	0.771	0.754	nan	2.277	2.707	1.084	0.767	0.512	0.635	1.475	1.680	0.904	1.949	2.064	1.448	3.317	0.253	0.218	0.088	0.517	1.650	0.236	1.768	0.142	0.425
2970	chr15	80898543	80912719	+	0	NA	Intergenic	Intergenic	32187	NR_049837	100847042		NR_049837	ENSG00000172379	MIR5572	-	microRNA 5572	ncRNA	0.647	nan	0.635	0.192	1.301	0.620	0.395	0.536	0.068	0.309	0.233	1.463	1.996	0.038	0.074	0.729	1.359	0.756	1.361	0.363	0.339	3.135	0.694	0.237	0.321	2.753	4.075	1.965	1.336	0.671	0.641	0.857	1.303	0.266	0.396	0.167	0.259	1.234	0.664	2.244	1.644	0.061	0.075	0.395	1.463	0.315	1.968	0.939	0.018
4467	chr2	111655849	111663673	+	0	NA	intron (NM_001142807, intron 10 of 17)	intron (NM_001142807, intron 10 of 17)	169611	NM_001142807	55289	Hs.253320	NM_018308	ENSG00000153093	ACOXL	-	acyl-CoA oxidase-like	protein-coding	0.747	nan	0.720	0.100	0.322	0.068	0.135	0.114	0.002	0.739	0.305	0.169	nan	0.027	0.083	0.327	0.288	0.211	0.304	0.659	nan	10.939	1.989	0.353	0.434	0.182	0.410	0.508	0.545	0.269	0.196	0.139	0.232	1.182	0.674	0.064	0.194	0.949	0.457	0.035	0.328	0.220	0.061	0.135	0.169	0.038	0.392	0.065	0.015
161	chr1	27460754	27482491	+	0	NA	intron (NM_003047, intron 1 of 11)	L2a|LINE|L2	9999	NR_046474	6548	Hs.469116	NM_003047	ENSG00000090020	SLC9A1	APNH|LIKNS|NHE-1|NHE1|PPP1R143	solute carrier family 9 member A1	protein-coding	1.948	1.589	nan	1.820	0.774	0.472	0.796	0.223	0.164	0.267	0.123	0.642	2.009	0.269	0.104	0.805	1.358	0.986	1.668	4.865	5.598	1.295	0.450	1.576	1.770	1.452	2.052	2.582	3.359	3.264	2.877	0.797	1.213	0.720	0.713	0.988	2.471	1.427	0.923	0.524	0.964	0.153	0.444	0.796	0.642	0.329	0.341	0.617	0.875
7881	chr8	110697167	110706961	+	0	NA	intron (NM_001099744, intron 1 of 7)	(A)n|Simple_repeat|Simple_repeat	1956	NM_001099743	55638	Hs.390738	NM_017786	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin	protein-coding	nan	nan	0.875	0.510	0.281	0.113	0.040	0.085	0.116	0.479	0.261	0.144	1.145	0.056	0.048	0.359	0.373	0.054	0.059	0.636	0.713	nan	1.528	0.702	nan	2.786	nan	0.818	1.034	2.736	2.986	0.210	0.372	1.551	1.305	0.467	0.607	0.671	0.386	3.054	5.098	0.439	0.470	0.040	0.144	0.089	1.428	0.060	0.354
6168	chr5	10348815	10359339	+	0	NA	intron (NM_001270661, intron 1 of 22)	CpG	326	NM_005885	10299	Hs.432862	NM_005885	ENSG00000145495	MARCH6	DOA10|MARCH-VI|RNF176|TEB4	membrane associated ring-CH-type finger 6	protein-coding	nan	nan	nan	9.138	4.844	2.136	1.484	3.061	0.459	4.085	2.325	6.473	nan	2.767	0.125	4.281	4.450	4.648	5.637	9.780	9.323	6.068	2.897	4.971	5.187	nan	7.349	5.943	9.655	7.770	8.415	2.472	4.253	7.239	8.198	3.353	nan	3.956	2.391	2.717	4.483	1.507	1.234	1.484	6.473	1.161	2.487	1.474	1.119
2318	chr13	60017346	60035716	+	0	NA	Intergenic	Intergenic	-560321	NR_046539	100874195	Hs.664101	NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA	nan	1.078	nan	0.426	0.795	0.393	1.756	0.057	0.061	0.076	0.152	0.778	0.917	0.024	0.079	0.588	0.393	0.393	1.924	1.884	1.658	4.742	1.582	0.117	0.168	0.586	0.860	0.947	0.662	1.293	1.463	0.096	0.214	4.369	3.440	1.139	2.564	0.375	0.253	0.045	0.150	1.156	1.218	1.756	0.778	1.469	0.454	0.032	0.450
4526	chr2	142817658	142826409	+	0	NA	intron (NM_018557, intron 1 of 90)	intron (NM_018557, intron 1 of 90)	67237	NM_018557	53353	Hs.656461	NM_018557	ENSG00000168702	LRP1B	LRP-1B|LRP-DIT|LRPDIT	LDL receptor related protein 1B	protein-coding	0.837	nan	0.753	0.080	0.208	0.075	0.422	0.077	0.073	0.145	0.058	0.068	0.264	0.026	0.077	0.379	0.147	2.871	3.254	0.145	0.233	0.131	0.034	0.206	0.179	4.881	4.994	0.262	0.295	0.811	0.348	0.136	0.249	0.456	0.512	0.361	0.513	0.108	0.159	0.013	0.020	0.337	0.045	0.422	0.068	0.156		0.035	0.057
7395	chr7	96280365	96307392	+	0	NA	promoter-TSS (NR_038948)	promoter-TSS (NR_038948)	-228	NR_038948	100506136	Hs.729869	NR_038948	ENSG00000127922	LOC100506136	-	uncharacterized LOC100506136	ncRNA	nan	1.060	nan	1.059	1.153	0.629	0.303	0.181	0.071	1.114	0.715	0.625	0.536	0.092	0.163	0.406	0.302	0.279	0.571	0.570	0.705	3.719	1.474	0.281	0.253	1.041	1.250	0.633	0.670	0.976	0.891	0.170	0.289	4.695	8.407	0.962	nan	1.474	0.849	0.062	0.099	1.752	0.556	0.303	0.625	0.410	0.097	0.073	1.133
7415	chr7	103552322	103558335	+	0	NA	intron (NM_173054, intron 2 of 63)	intron (NM_173054, intron 2 of 63)	74635	NM_005045	5649	Hs.655654	NM_005045	ENSG00000189056	RELN	ETL7|LIS2|PRO1598|RL	reelin	protein-coding	nan	0.617	0.762	0.161	0.166	0.160	0.122	0.095	0.081	0.419	0.165	0.278	0.375	0.037	0.124	0.628	0.312	7.229	2.853	0.228	0.363	0.491	0.244	0.603	0.521	0.473	0.537	0.339	0.295	0.481	0.203	0.197	0.251	0.259	0.330	0.380	nan	0.793	0.748	0.028	0.060	0.063	0.040	0.122	0.278		0.068	0.067	0.102
6699	chr6	30708270	30726323	+	0	NA	Intergenic	L2a|LINE|L2	-4969	NM_003897	8870	Hs.76095	NM_003897	ENSG00000137331	IER3	DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1	immediate early response 3	protein-coding	nan	1.722	nan	0.772	1.109	0.609	1.403	2.765	0.626	0.383	0.220	1.386	3.123	1.751	0.132	0.771	1.360	2.515	7.535	nan	1.374	1.623	0.490	1.998	2.135	0.779	1.438	1.523	2.542	0.997	0.795	0.722	1.246	0.559	0.532	0.621	1.295	0.851	0.639	0.641	0.440	0.090	0.302	1.403	1.386	0.320	1.600	0.589	0.446
5051	chr20	62609201	62613529	+	0	NA	promoter-TSS (NM_080621)	promoter-TSS (NM_080621)	-370	NM_080621	140700	Hs.27189	NM_080621	ENSG00000130590	SAMD10	C20orf136|dJ591C20|dJ591C20.7	sterile alpha motif domain containing 10	protein-coding	3.452	6.098	3.375	6.623	4.447	2.604	4.075	1.062	0.116	2.467	1.543	4.610	13.162	3.204	0.126	11.064	12.524	2.672	3.863	6.043	6.014	8.353	3.287	10.833	11.132	4.286	6.002	9.769	9.908	3.684	4.805	5.792	9.125	1.669	1.396	1.625	3.638	3.639	2.141	5.900	5.206	0.331	2.675	4.075	4.610	1.725	7.762	4.012	1.166
3378	chr17	36684428	36702844	+	0	NA	intron (NM_025248, intron 18 of 18)	AluJb|SINE|Alu	68547	NM_025248	80725	Hs.448872	NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding	nan	0.847	1.502	0.440	10.033	5.510	0.229	0.053	0.078	1.802	0.930	1.063	0.634	0.065	0.057	0.567	0.738	0.301	0.335	nan	0.766	4.183	1.440	1.277	1.406	0.291	0.616	4.453	3.394	nan	0.433	0.440	0.427	2.884	3.538	0.485	0.835	2.649	1.125	0.064	0.455	0.615	0.078	0.229	1.063	0.226	2.565	0.097	0.134
4034	chr19	36543770	36548180	+	0	NA	promoter-TSS (NM_152658)	promoter-TSS (NM_152658)	192	NM_001083961	284403	Hs.116244	NM_173636	ENSG00000075702	WDR62	C19orf14|MCPH2	WD repeat domain 62	protein-coding	6.063	3.299	3.633	9.298	4.538	2.386	3.253	2.391	0.515	1.633	0.959	4.653	23.566	4.895	0.186	3.455	3.216	5.120	7.510	6.972	5.338	8.314	4.441	13.399	13.897	5.003	5.896	6.243	11.643	nan	5.727	3.526	5.185	4.963	7.207	4.522	6.265	3.943	1.998	5.216	5.564	1.466	1.545	3.253	4.653	1.513	2.011	2.655	2.196
7467	chr7	126164359	126178034	+	0	NA	intron (NM_001127323, intron 9 of 10)	intron (NM_001127323, intron 9 of 10)	527042	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA	1.235	0.658	0.773	0.340	0.820	0.362	0.159	0.082	0.106	0.481	0.473	0.368	0.877	0.047	0.157	0.301	0.230	0.324	0.331	0.594	0.731	0.190	0.087	0.251	0.165	0.180	0.249	4.734	4.343	0.339	0.241	0.151	0.308	0.458	0.400	0.250	0.574	2.204	1.085	5.832	4.327	0.132	0.438	0.159	0.368	0.056	1.068	0.050	0.082
4454	chr2	105021833	105035872	+	0	NA	non-coding (NR_135589, exon 2 of 2)	non-coding (NR_135589, exon 2 of 2)	1637	NR_135589	101927331	Hs.352254	NR_135589	ENSG00000225765	LINC01831	-	long intergenic non-protein coding RNA 1831	ncRNA	0.527	nan	0.534	0.038	5.602	3.169	0.469	0.064	0.091	0.355	0.197	0.685	0.895	0.032	0.060	0.566	1.284	0.262	0.288	0.779	0.938	0.146	0.091	0.128	0.102	0.302	0.517	0.490	0.405	0.357	0.150	0.823	1.925	0.491	0.334	0.110	0.149	0.827	0.558	0.004	0.025	0.047	0.057	0.469	0.685		0.217	2.534	0.027
5282	chr22	42143023	42161354	+	0	NA	intron (NM_152513, intron 17 of 30)	AluSz6|SINE|Alu	-44438	NM_001304797	79879	Hs.474991	NM_024821	ENSG00000100147	CCDC134	-	coiled-coil domain containing 134	protein-coding	0.866	nan	0.670	0.349	0.381	0.132	0.647	0.073	0.077	0.231	0.160	0.235	0.990	0.065	0.134	0.363	0.315	0.244	0.422	0.353	0.454	5.270	1.500	0.229	0.209	0.303	nan	0.427	0.593	nan	0.269	0.157	0.186	1.660	1.482	0.381	0.937	0.603	0.488	0.033	0.174	0.525	0.070	0.647	0.235	0.048	0.066	0.038	0.290
5563	chr3	136466186	136473942	+	0	NA	intron (NM_005862, intron 1 of 33)	intron (NM_005862, intron 1 of 33)	1181	NM_005862	10274	Hs.412586	NM_005862	ENSG00000118007	STAG1	SA1|SCC3A	stromal antigen 1	protein-coding	6.709	nan	nan	5.970	8.851	5.133	4.437	5.667	0.496	4.552	2.196	5.834	6.302	5.096	0.165	4.401	5.259	6.596	7.902	11.431	10.631	10.846	6.009	14.044	14.032	6.402	6.927	6.031	9.318	nan	10.796	4.516	7.962	3.538	3.520	8.753	7.302	2.887	1.506	6.106	4.822	0.723	5.078	4.437	5.834	1.328	1.874	2.652	3.053
6884	chr6	101981719	101994580	+	0	NA	intron (NM_001166247, intron 1 of 16)	intron (NM_001166247, intron 1 of 16)	141288	NM_021956	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding	1.029	nan	nan	0.136	0.258	0.242	0.235	0.776	0.099	0.164	0.242	0.009	0.321	0.062	0.112	0.658	0.522	1.260	1.232	0.339	nan	0.288	0.113	0.306	0.315	3.563	4.093	0.221	0.212	nan	0.346	0.309	0.530	0.810	0.864	0.760	2.222	0.320	0.269	0.077	0.131	0.133	0.144	0.235	0.009	0.069	0.048	0.078	0.663
7631	chr8	29578182	29602499	+	0	NA	intron (NR_026765, intron 1 of 3)	MIRc|SINE|MIR	15285	NR_026765	619351	Hs.566911	NR_026765	ENSG00000251191	LINC00589	C8orf75	long intergenic non-protein coding RNA 589	ncRNA	nan	2.172	nan	0.987	3.822	2.285	1.266	0.151	0.079	0.700	0.353	2.273	4.596	0.063	0.114	0.509	0.617	0.526	1.274	nan	2.039	nan	2.915	0.133	0.125	0.382	0.618	3.290	3.400	1.228	1.181	0.170	0.234	3.678	3.656	0.953	2.072	nan	nan	1.141	0.578	1.129	0.143	1.266	2.273	0.200	2.101	0.056	0.357
3153	chr16	62286053	62291831	+	0	NA	Intergenic	Intergenic	-218203	NM_001796	1006	Hs.368322	NM_001796	ENSG00000150394	CDH8	Nbla04261	cadherin 8	protein-coding	nan	nan	0.364	0.097	0.157	0.028	0.346	0.116	0.083	0.136	0.114	0.042	0.135	0.018	0.065	0.757	0.492	7.485	9.257	0.123	0.118	0.144	0.053	0.378	0.442	0.259	nan	0.129	0.177	0.263	0.152	0.137	0.334	0.341	0.369	0.181	0.212	0.639	0.427	0.423	0.038			0.346	0.042		0.053	0.086	0.043
4787	chr2	240209891	240217942	+	0	NA	intron (NM_006037, intron 2 of 26)	intron (NM_006037, intron 2 of 26)	-13241	NR_036229	100423043		NR_036229	ENSG00000265215	MIR4269	-	microRNA 4269	ncRNA	1.251	nan	1.841	1.382	7.448	4.024	0.860	0.083	0.020	1.033	0.663	3.888	3.315	0.129	0.092	1.837	2.041	0.406	0.614	4.309	3.291	3.828	1.259	0.785	0.798	0.566	0.985	2.463	2.576	0.477	0.397	1.225	1.416	0.569	0.861	0.247	0.358	1.102	0.760	4.377	1.358	0.047	0.541	0.860	3.888	0.133	0.544	0.500	0.139
911	chr1	230400605	230444221	+	0	NA	Intergenic	Intergenic	139261	NM_001258311	79605	Hs.520463	NM_024554	ENSG00000177614	PGBD5	-	piggyBac transposable element derived 5	protein-coding	1.132	2.919	1.803	1.668	2.907	1.457	0.732	0.213	0.103	0.966	0.581	2.008	3.481	0.045	0.110	0.466	0.747	0.421	0.933	3.146	3.227	nan	1.141	0.395	0.470	0.498	0.767	nan	2.433	0.686	0.660	0.263	0.373	0.962	0.812	0.358	0.572	nan	1.071	0.463	1.410	0.194	0.181	0.732	2.008	0.156	1.118	0.103	0.094
6253	chr5	50328642	50357255	+	0	NA	Intergenic	Intergenic	-76927	NR_104653	100287592	Hs.519298	NR_104653	ENSG00000251573	LINC02106	-	long intergenic non-protein coding RNA 2106	ncRNA	nan	nan	0.659	0.271	0.287	0.184	0.375	0.056	0.061	0.093	0.104	0.112	0.609	0.057	0.114	0.175	0.098	0.733	1.987	0.304	0.458	nan	0.467	0.061	0.083	0.747	0.798	0.356	0.302	nan	1.552	0.058	0.141	6.127	7.594	0.108	0.168	0.450	0.370	0.244	0.115	2.138	0.066	0.375	0.112	0.417	0.092	0.024	0.069
7523	chr7	141851617	141862468	+	0	NA	intron (NM_001293626, intron 17 of 47)	intron (NM_001293626, intron 17 of 47)	45493	NM_001293626	93432	Hs.647098	NM_001008748	ENSG00000257743	MGAM2	-	maltase-glucoamylase 2 (putative)	protein-coding	0.773	0.652	0.842	1.599	0.129	0.184	0.106	0.105	0.148	0.663	0.166	0.574	1.203	0.060	0.122	1.564	1.311	0.608	0.628	0.206	0.251	0.222	0.114	6.840	7.070	0.159	0.183	0.169	0.107	0.375	0.193	5.942	5.024	4.442	5.605	0.287	0.633	1.227	nan	0.011	0.197	0.876	0.393	0.106	0.574	0.036	0.019	3.788	0.090
4079	chr19	42529042	42549243	+	0	NA	intron (NM_002088, intron 11 of 18)	AluSp|SINE|Alu	30815	NM_002088	2901	Hs.367799	NM_002088	ENSG00000105737	GRIK5	EAA2|GRIK2|GluK5|KA2	glutamate ionotropic receptor kainate type subunit 5	protein-coding	2.333	0.920	3.887	0.157	0.265	0.265	0.183	0.096	0.151	0.063	0.091	0.234	0.336	0.096	0.112	0.556	0.684	0.236	0.378	0.495	0.675	0.517	0.226	0.529	0.657	2.686	3.304	0.501	0.704	3.498	3.404	0.542	0.801	0.204	0.236	1.072	2.511	0.584	0.511	0.132	0.504	0.062	0.297	0.183	0.234	0.742	0.161	0.275	0.479
2965	chr15	78364840	78382966	+	0	NA	Intergenic	ORSL-2b|DNA|hAT-Tip100	-3909	NM_015079	23102	Hs.567426	NM_015079	ENSG00000167202	TBC1D2B	-	TBC1 domain family member 2B	protein-coding	0.750	1.044	1.307	0.305	0.600	0.442	0.297	0.792	0.116	0.330	0.231	0.465	1.225	0.293	0.069	3.148	3.695	2.287	1.685	0.601	0.610	1.042	0.367	1.061	1.124	0.804	1.209	0.657	0.816	1.368	1.161	4.456	5.415	0.364	0.357	0.389	0.696	0.594	0.474	0.171	0.338	0.048	0.173	0.297	0.465	0.135	0.447	4.730	0.143
7829	chr8	100786967	100817518	+	0	NA	intron (NM_152564, intron 43 of 61)	intron (NM_152564, intron 43 of 61)	104000	NM_004374	1345	Hs.351875	NM_004374	ENSG00000164919	COX6C	-	cytochrome c oxidase subunit 6C	protein-coding	1.825	nan	nan	0.792	0.410	0.231	0.239	1.280	0.244	0.119	0.075	0.365	5.115	0.036	0.093	0.437	0.372	0.848	1.439	1.594	1.612	nan	0.232	0.593	0.614	1.964	nan	2.344	nan	nan	0.441	0.293	0.382	0.692	0.937	0.511	nan	1.101	0.652	5.106	0.383	0.206	0.105	0.239	0.365	0.073	0.395	0.107	0.271
7909	chr8	124668655	124682533	+	0	NA	Intergenic	AluSc|SINE|Alu	-10404	NM_001081675	340359	Hs.450252	NM_001081675	ENSG00000175946	KLHL38	C8ORFK36	kelch like family member 38	protein-coding	nan	nan	nan	0.366	0.456	0.242	1.087	0.238	0.093	0.090	0.083	0.260	nan	0.054	0.063	0.272	0.218	0.154	0.275	2.431	2.022	7.121	2.503	nan	nan	0.164	0.288	0.537	0.473	0.354	0.229	0.292	0.303	2.297	1.319	0.193	0.316	1.073	0.632	1.526	0.727	0.394	0.775	1.087	0.260	0.316	0.095	0.128	0.075
4907	chr20	29829129	29830091	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-15857	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding	18.826	24.416	nan	3.341	3.060	1.824	2.289	0.893	12.432	3.385	5.193	1.138	5.637	0.896	4.942	11.363	4.044	4.140	5.623	9.214	15.130	4.580	3.831	7.368	5.490	12.485	15.961	6.178	6.358	13.591	3.354	4.626	7.855	3.931	7.892	4.611	8.843	5.285	7.469	0.298	3.254	2.178	1.288	2.289	1.138	1.316	0.638	0.717	0.840
5058	chr21	10819337	10820145	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	171202	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding	23.727	27.820	25.232	6.201	8.281	5.573	4.583	1.865	18.090	4.268	8.356	2.361	10.622	2.731	11.667	16.811	5.769	7.199	7.508	13.473	21.270	7.779	5.530	10.022	9.421	14.698	20.176	10.154	7.866	20.034	4.632	5.569	10.067	5.856	11.142	8.424	11.681	7.393	10.978	0.691	7.337	2.751	2.314	4.583	2.361	2.196	1.542	1.396	2.808
7130	chr7	2392257	2399294	+	0	NA	intron (NM_001037283, intron 1 of 18)	intron (NM_001037283, intron 1 of 18)	1301	NM_003751	8662	Hs.371001	NM_003751	ENSG00000106263	EIF3B	EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1	eukaryotic translation initiation factor 3 subunit B	protein-coding	6.582	3.751	6.372	4.723	5.270	3.401	5.936	3.753	0.368	2.498	1.245	8.491	nan	5.637	0.256	11.236	10.689	7.397	nan	9.382	12.288	nan	7.293	15.727	17.032	5.612	6.047	nan	14.962	7.755	8.132	10.518	13.627	6.788	8.694	10.441	7.833	3.254	2.017	3.646	3.925	1.578	2.898	5.936	8.491	1.696	4.092	2.403	3.507
7285	chr7	53337269	53344622	+	0	NA	Intergenic	Intergenic	237596	NM_182595	285877	Hs.381970	NM_182595	ENSG00000221900	POM121L12	-	POM121 transmembrane nucleoporin like 12	protein-coding	nan	0.824	0.857	0.024	0.155	0.130	0.277	0.102	0.087	0.065	0.077	0.098	0.494	0.117	0.168	1.299	0.593	8.702	6.145	0.296	0.529	0.091	0.106	0.094	0.022	0.170	0.318	0.541	0.555	0.502	0.228	0.238	0.383	0.046	0.068	0.237	0.700	0.513	0.629	0.099	0.012	0.013	0.053	0.277	0.098		0.138	0.053	0.082
7016	chr6	143262983	143269989	+	0	NA	promoter-TSS (NM_006734)	promoter-TSS (NM_006734)	-148	NM_006734	3097	Hs.510172	NM_006734	ENSG00000010818	HIVEP2	HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	nan	4.560	nan	2.834	0.482	0.161	2.668	5.698	0.219	1.392	0.458	4.273	12.573	7.190	0.244	5.365	8.873	8.273	13.278	4.487	2.505	0.961	0.225	8.327	8.304	2.221	2.814	1.705	4.435	1.967	2.922	2.518	5.609	0.151	0.232	0.622	1.203	0.094	0.188	7.560	3.090	0.040	3.395	2.668	4.273	0.945	3.663	2.594	0.463
7609	chr8	18937000	18957437	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-76022	NM_015310	23362	Hs.434255	NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding	1.344	2.829	nan	1.965	3.587	1.813	1.369	0.422	0.110	0.905	0.394	1.799	2.051	0.032	0.099	0.524	0.775	0.345	0.800	4.376	nan	5.201	2.358	0.287	0.301	1.219	1.369	4.308	4.584	1.197	1.027	1.171	1.371	2.554	3.780	0.260	0.337	5.208	2.417	2.210	1.554	0.957	0.225	1.369	1.799	0.464	2.755	1.962	0.085
6285	chr5	59105927	59120811	+	0	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	-48931	NM_001197218	5144	Hs.117545	NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding	nan	nan	1.206	0.047	0.345	0.118	0.184	0.220	0.043	0.084	0.055	0.072	0.315	0.066	0.135	0.197	0.130	0.329	0.295	0.294	0.358	nan	0.133	0.149	0.161	3.745	3.835	0.453	0.280	nan	0.301	0.095	0.135	0.194	0.322	0.262	0.627	0.405	0.389	0.063	0.145	0.038	0.079	0.184	0.072		0.144	0.013	0.182
4531	chr2	143725704	143747731	+	0	NA	intron (NM_001199241, intron 9 of 14)	intron (NM_001199241, intron 9 of 14)	101522	NM_001199241	8942	Hs.470126	NM_003937	ENSG00000115919	KYNU	KYNUU	kynureninase	protein-coding	0.686	nan	0.703	0.100	0.185	0.095	0.146	0.297	0.088	0.078	0.090	0.071	0.638	0.025	0.077	1.757	0.719	13.596	9.630	0.218	0.286	0.102	0.057	0.906	0.927	0.418	0.689	0.250	0.289	0.414	0.153	0.343	0.410	0.029	0.044	0.305	0.488	0.209	0.308	0.007	0.032	0.008	0.047	0.146	0.071	0.013	0.037	0.090	0.062
5568	chr3	138998576	139005198	+	0	NA	Intergenic	L2c|LINE|L2	-49523	NR_027070	140464	Hs.721270	NR_027070		PISRT1	NCRNA00195	polled intersex syndrome regulated transcript 1 (non-protein coding RNA)	ncRNA	2.484	nan	nan	0.189	0.350	0.193	0.589	0.112	0.087	0.167	0.161	0.058	0.194	0.017	0.038	0.716	0.616	0.142	0.231	0.430	0.480	0.780	0.269	0.307	0.329	2.472	3.275	0.098	0.117	nan	10.360	0.281	0.340	0.166	0.297	1.408	1.408	0.641	0.637	0.111	0.067	0.057	0.146	0.589	0.058	1.138	0.046	0.104	1.396
3005	chr15	99673973	99689745	+	0	NA	intron (NR_109947, intron 11 of 12)	intron (NR_109947, intron 11 of 12)	36573	NM_145728	23336	Hs.207106	NM_015286	ENSG00000182253	SYNM	DMN|SYN	synemin	protein-coding	nan	nan	nan	0.537	0.178	0.162	0.706	0.335	0.102	0.505	0.280	0.374	1.042	0.028	0.081	0.808	0.923	0.408	0.593	0.580	0.581	5.667	1.286	0.342	0.392	0.394	0.502	0.773	0.549	nan	0.295	0.327	0.642	0.367	0.577	0.507	nan	0.631	0.435	0.224	0.213	0.055	0.167	0.706	0.374	0.081	0.267	0.356	0.205
956	chr1	243631718	243646323	+	0	NA	intron (NM_006642, intron 16 of 17)	intron (NM_006642, intron 16 of 17)	129542	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA	nan	0.989	nan	0.199	0.438	0.208	1.347	0.519	0.068	0.312	0.176	0.496	0.467	0.383	0.105	0.477	0.467	0.481	0.596	0.655	0.756	3.811	1.326	0.365	0.366	8.378	8.717	0.311	0.470	6.182	6.803	0.197	0.238	0.342	0.418	1.570	2.603	0.519	0.540	0.053	0.110	0.096	0.192	1.347	0.496	1.035	0.154	0.081	1.408
3933	chr19	1587322	1593565	+	0	NA	intron (NM_001281454, intron 1 of 6)	AluJb|SINE|Alu	2317	NM_001281454	53615	Hs.178728	NM_003926	ENSG00000071655	MBD3	-	methyl-CpG binding domain protein 3	protein-coding	4.961	2.497	7.139	4.272	4.937	2.410	3.844	1.798	0.231	3.036	1.265	6.063	5.940	2.799	0.121	5.868	5.371	5.168	7.075	8.992	9.076	4.320	1.898	9.794	9.822	4.336	5.820	5.025	nan	10.220	10.892	2.487	4.378	6.406	5.296	4.881	5.383	3.721	1.949	4.739	4.029	1.186	1.994	3.844	6.063	1.616	2.772	0.934	2.040
4915	chr20	30840133	30879227	+	0	NA	Intergenic	Intergenic	-5774	NM_004798	9371	Hs.369670	NM_004798	ENSG00000101350	KIF3B	FLA8|HH0048|KLP-11	kinesin family member 3B	protein-coding	1.206	1.595	1.249	1.090	0.667	0.394	0.245	0.267	0.206	0.386	0.301	0.897	1.548	0.208	0.147	0.783	0.880	0.465	0.701	0.837	nan	5.707	1.387	0.588	0.648	0.798	1.253	1.946	1.905	1.038	0.706	0.447	0.759	1.261	1.432	0.545	nan	0.861	0.509	0.328	0.412	0.356	0.124	0.245	0.897	0.166	0.337	0.263	0.206
2951	chr15	74485555	74563071	+	0	NA	Intergenic	AluSz|SINE|Alu	-4317	NM_025055	80125	Hs.383206	NM_025055	ENSG00000140481	CCDC33	CT61|HP11097	coiled-coil domain containing 33	protein-coding	1.269	2.274	1.131	0.477	3.975	2.088	2.582	0.587	0.208	0.709	0.516	3.455	5.883	0.067	0.059	1.178	1.454	0.416	0.775	2.110	2.370	1.726	0.594	0.211	0.224	2.237	2.496	2.923	3.072	1.743	1.423	0.726	0.838	1.087	0.968	1.053	2.835	1.157	0.698	2.615	3.645	0.450	0.734	2.582	3.455	0.536	0.379	0.401	0.909
3204	chr16	85354761	85437822	+	0	NA	Intergenic	MER91C|DNA|hAT-Tip100	-56360	NR_049816	100847022		NR_049816	ENSG00000266307	MIR5093	-	microRNA 5093	ncRNA	nan	1.322	2.323	0.790	1.353	0.730	3.156	0.326	0.169	0.294	0.229	1.388	4.089	0.286	0.072	1.413	2.581	0.212	0.382	2.231	2.068	1.474	0.362	0.697	0.741	1.090	1.507	1.569	1.758	2.140	1.787	0.464	0.576	1.004	0.774	0.417	0.902	1.537	0.840	1.716	0.385	0.281	0.329	3.156	1.388	1.157	1.677	0.267	0.178
1330	chr11	17859456	17871599	+	0	NA	intron (NM_012139, intron 10 of 10)	MER5A|DNA|hAT-Charlie	108032	NM_004976	3746	Hs.552896	NM_004976	ENSG00000129159	KCNC1	EPM7|KV3.1|KV4|NGK2	potassium voltage-gated channel subfamily C member 1	protein-coding	0.767	nan	2.849	0.450	0.330	0.100	0.469	0.148	0.093	0.310	0.144	0.171	0.539	0.018	0.091	nan	6.083	0.212	0.296	1.106	1.157	0.771	0.233	0.475	0.435	0.897	nan	0.348	0.592	0.779	0.895	0.341	0.342	0.860	1.203	0.274	0.477	0.651	nan	0.069	0.170	0.102	0.713	0.469	0.171	0.073	0.079	0.040	0.174
1284	chr11	3009185	3024670	+	0	NA	Intergenic	Intergenic	-3320	NM_005969	4676	Hs.731784	NM_005969	ENSG00000205531	NAP1L4	NAP1L4b|NAP2|NAP2L|hNAP2	nucleosome assembly protein 1 like 4	protein-coding	2.635	2.701	4.252	1.462	1.295	0.725	1.263	0.638	0.099	1.218	0.743	1.736	8.191	0.944	0.106	4.401	6.076	2.778	3.731	2.244	2.368	3.709	1.227	5.747	5.888	2.234	3.073	1.358	2.862	2.814	3.027	2.905	5.303	4.510	4.984	1.849	1.585	2.171	1.274	1.377	1.138	1.204	0.433	1.263	1.736	0.664	0.458	2.742	0.493
4771	chr2	237606573	237639164	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	144488	NM_020311	57007	Hs.471751	NM_020311	ENSG00000144476	ACKR3	CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1	atypical chemokine receptor 3	protein-coding	1.118	nan	1.395	0.406	0.288	0.227	0.759	0.080	0.025	0.044	0.074	0.236	1.010	0.063	0.114	1.146	1.188	0.339	0.736	0.737	0.846	0.124	0.092	0.638	0.650	1.395	1.734	0.719	nan	1.064	0.747	1.054	1.238	0.123	0.110	0.231	0.330	0.145	0.251	3.946	0.324	0.050	0.061	0.759	0.236	0.089	0.186	1.843	0.019
3772	chr18	43015973	43047277	+	0	NA	intron (NR_110899, intron 6 of 7)	intron (NR_110899, intron 6 of 7)	55376	NR_110899	101927980	Hs.591058	NR_110899		SLC14A2-AS1	-	SLC14A2 antisense RNA 1	ncRNA	nan	1.086	0.924	0.268	0.304	0.128	0.838	0.094	0.066	0.422	0.283	0.172	1.421	0.052	0.068	0.459	0.255	0.176	0.305	1.696	1.616	0.321	0.164	0.071	0.071	0.440	0.865	0.292	0.366	1.338	1.543	0.102	0.138	0.273	0.319	0.139	nan	4.769	2.831	0.705	0.608	0.109	0.098	0.838	0.172	0.115	1.003	0.076	0.114
3526	chr17	71150309	71164510	+	0	NA	Intergenic	Intergenic	-3751	NM_001050	6752	Hs.514451	NM_001050	ENSG00000180616	SSTR2	-	somatostatin receptor 2	protein-coding	1.825	0.952	2.703	0.247	0.585	0.349	1.011	0.208	0.159	0.197	0.169	0.329	3.465	0.099	0.108	0.792	1.209	0.342	0.615	1.234	1.423	1.318	0.454	0.301	0.354	nan	2.734	0.838	1.124	5.608	6.949	0.356	0.527	2.733	2.637	1.324	3.925	nan	0.850	0.815	0.081	1.533	2.125	1.011	0.329	0.942	0.279	0.077	0.647
4935	chr20	34679415	34704768	+	0	NA	intron (NM_001258329, intron 1 of 22)	intron (NM_001258329, intron 1 of 22)	11459	NM_177996	2036	Hs.437422	NM_012156	ENSG00000088367	EPB41L1	4.1N|MRD11	erythrocyte membrane protein band 4.1 like 1	protein-coding	1.179	1.553	1.024	0.857	0.267	0.120	0.284	1.168	0.350	0.309	0.142	0.302	1.053	0.261	0.092	1.948	4.172	0.387	0.689	0.614	nan	3.986	1.006	2.068	2.041	0.275	0.504	1.303	1.430	0.724	0.418	1.190	1.353	0.424	0.519	1.174	nan	0.574	0.469	0.062	0.593	0.079	0.110	0.284	0.302	0.085	0.108	0.278	0.920
5604	chr3	150124390	150132118	+	0	NA	non-coding (NR_130136, exon 1 of 5)	non-coding (NR_130136, exon 1 of 5)	2132	NM_014779	9819	Hs.722470	NM_014779	ENSG00000196428	TSC22D2	TILZ4a|TILZ4b|TILZ4c	TSC22 domain family member 2	protein-coding	nan	4.167	3.917	4.028	5.167	2.534	2.771	5.316	0.436	3.390	1.816	3.377	6.067	2.389	0.051	2.801	3.646	3.239	6.500	5.462	4.984	10.472	4.755	8.024	8.192	4.071	nan	4.818	6.543	8.039	8.183	3.923	9.209	2.098	2.400	4.988	6.234	2.922	1.385	1.578	3.340	0.630	3.155	2.771	3.377	0.863	1.848	2.813	2.161
6441	chr5	124706132	124713636	+	0	NA	Intergenic	Intergenic	-119070	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA	nan	0.975	0.947	0.232	3.487	1.393	0.662	0.498	0.214	0.613	0.289	0.474	0.635	0.837	0.131	0.480	0.666	0.350	nan	0.387	0.436	1.958	0.785	0.456	0.304	1.233	1.678	0.662	0.626	0.751	0.346	0.274	0.342	5.718	7.910	1.359	3.912	0.386	0.414	0.147	0.071	1.824	0.560	0.662	0.474	0.091	0.134	0.106	0.875
1592	chr11	95744659	95782244	+	0	NA	intron (NM_032427, intron 2 of 4)	L1ME1|LINE|L1	-106080	NM_016156	8898	Hs.181326	NM_016156	ENSG00000087053	MTMR2	CMT4B|CMT4B1	myotubularin related protein 2	protein-coding	1.057	nan	0.782	0.094	0.366	0.171	0.287	0.330	0.086	0.371	0.152	0.060	0.302	0.168	0.091	1.682	1.602	0.583	nan	0.350	0.407	0.236	0.128	3.233	3.515	3.640	4.387	0.167	0.184	1.089	0.847	1.097	1.352	1.268	1.697	1.367	nan	0.887	0.755	0.201	0.097	0.244	0.469	0.287	0.060	0.299	0.030	0.681	1.289
6833	chr6	64280904	64284958	+	0	NA	intron (NM_003463, intron 1 of 5)	CpG	1014	NM_003463	7803	Hs.227777	NM_003463	ENSG00000112245	PTP4A1	HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1	protein tyrosine phosphatase type IVA, member 1	protein-coding	nan	8.019	7.808	8.860	8.845	5.064	8.365	5.077	0.320	4.484	1.298	10.816	15.489	7.456	0.282	6.356	7.399	10.658	14.987	12.018	8.151	13.609	5.942	15.424	15.613	2.780	3.714	12.781	19.524	9.534	12.965	3.251	7.400	12.404	11.464	6.771	5.412	3.098	1.791	5.423	4.507	1.808	5.772	8.365	10.816	1.442	5.610	2.316	1.314
5005	chr20	52463563	52544191	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-11629	NR_002189	391257	Hs.449977	NR_002189		SUMO1P1	PIC1L|UBL2|UBL6	SUMO1 pseudogene 1	pseudo	1.246	1.625	1.122	0.503	1.149	0.655	0.751	1.166	0.220	0.063	0.081	0.211	0.359	4.949	0.221	0.671	nan	0.923	2.781	1.160	1.208	0.165	0.094	0.596	0.641	0.778	1.092	1.635	1.840	1.751	1.607	0.495	0.804	0.043	0.061	0.639	1.581	0.239	0.331	0.703	1.240	0.017	0.394	0.751	0.211	0.452	0.276	0.620	0.369
2997	chr15	93420505	93432098	+	0	NA	promoter-TSS (NR_037602)	promoter-TSS (NR_037602)	-225	NR_037602	100507217	Hs.622504	NR_037600		LINC01578	-	long intergenic non-protein coding RNA 1578	ncRNA	nan	nan	nan	3.388	4.926	2.692	2.656	2.847	0.283	2.426	1.335	5.336	9.076	3.010	0.117	3.116	4.037	4.605	6.781	6.465	6.454	nan	2.222	10.859	10.893	3.698	4.476	6.041	8.196	nan	11.969	3.304	6.955	3.181	2.663	5.844	nan	2.620	1.305	2.151	8.193	0.551	2.337	2.656	5.336	0.672	2.461	2.128	1.581
6570	chr5	179124183	179127901	+	0	NA	5' UTR (NM_001746, exon 1 of 15)	5' UTR (NM_001746, exon 1 of 15)	112	NM_001746	821	Hs.567968	NM_001746	ENSG00000127022	CANX	CNX|IP90|P90	calnexin	protein-coding	7.507	4.944	6.525	5.266	3.126	1.938	3.176	4.765	0.688	3.102	1.418	5.577	16.695	5.737	0.181	5.138	4.460	10.898	nan	8.044	5.687	10.048	5.818	12.700	13.063	5.561	nan	7.778	17.563	7.679	9.716	4.918	7.998	9.673	15.109	11.333	6.961	2.781	1.195	6.964	5.655	2.152	2.697	3.176	5.577	1.482	3.724	2.857	2.240
1770	chr12	3408577	3430125	+	0	NA	Intergenic	Intergenic	-71164	NM_001256536	56341	Hs.504530	NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding	1.132	nan	nan	4.388	0.485	0.209	3.129	0.094	0.082	1.255	0.324	0.587	5.147	0.058	0.071	0.339	0.311	0.248	0.442	nan	0.903	8.489	2.160	0.540	0.484	0.223	0.477	4.876	4.854	0.421	0.312	0.353	0.459	1.996	2.383	0.354	nan	1.746	0.958	1.119	0.175	0.310	0.115	3.129	0.587	0.189	1.278	0.120	0.192
4494	chr2	131143049	131150185	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	33037	NM_001142370	26469	Hs.516390	NM_014369	ENSG00000072135	PTPN18	BDP1|PTP-HSCF	protein tyrosine phosphatase, non-receptor type 18	protein-coding	nan	1.086	nan	0.411	1.283	0.571	0.539	0.429	0.068	0.483	0.227	1.603	2.801	0.483	0.052	4.084	4.167	8.784	4.605	2.099	1.512	2.749	0.784	13.594	13.727	0.880	1.150	1.098	nan	1.343	1.695	5.509	5.917	0.586	0.461	0.315	0.585	0.523	0.391	2.203	1.425	0.092	0.167	0.539	1.603	0.283	0.847	4.114	0.121
5458	chr3	111420860	111434869	+	0	NA	intron (NM_001185106, intron 2 of 4)	intron (NM_001185106, intron 2 of 4)	-23463	NM_001134437	90102	Hs.603252	NM_145753	ENSG00000144824	PHLDB2	LL5b|LL5beta	pleckstrin homology like domain family B member 2	protein-coding	1.400	nan	0.822	0.088	5.592	3.011	0.384	0.139	0.252	0.392	0.211	0.393	0.275	0.039	0.066	1.080	1.192	0.529	0.739	0.451	nan	2.209	0.902	0.393	0.305	nan	0.368	0.279	0.316	1.481	1.116	0.353	0.689	0.286	0.626	0.729	1.340	1.391	0.929	0.068	0.100	0.073	0.689	0.384	0.393	0.145	0.022	0.368	0.394
2735	chr14	91683844	91701039	+	0	NA	TTS (NM_001102366)	TTS (NM_001102366)	18411	NM_001177676	8111	Hs.8882	NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding	2.662	0.632	nan	0.174	0.256	0.158	0.238	0.165	0.101	0.115	0.106	0.126	0.777	0.069	0.096	0.299	0.322	0.232	0.293	0.781	0.736	0.324	0.129	0.528	0.575	2.443	3.107	1.257	1.289	2.471	2.468	0.224	0.165	0.152	0.128	0.375	1.147	nan	0.747	7.011	0.696	0.033	0.149	0.238	0.126	0.549	0.077	0.006	0.172
1209	chr10	110350633	110364904	+	0	NA	Intergenic	L2c|LINE|L2	-528717	NR_125760	103695365	Hs.648991	NR_125760	ENSG00000229981	LINC01435	TCONS_00018040	long intergenic non-protein coding RNA 1435	ncRNA	0.782	nan	0.821	0.062	0.264	0.135	0.036	0.106	0.034	0.065	0.066	0.025	0.168	7.431	0.159	0.809	0.642	0.492	1.615	0.066	0.068	0.139	0.076	0.064	0.097	0.074	0.148	0.180	0.256	0.123	0.038	0.491	0.508	0.071	0.138	0.357	0.858	0.325	0.237	0.024	0.012	0.020	0.028	0.036	0.025	0.007	0.018	0.143	0.208
5622	chr3	157818973	157830202	+	0	NA	promoter-TSS (NM_001163678)	promoter-TSS (NM_001163678)	-635	NM_001163678	6474	Hs.55967	NM_003030	ENSG00000168779	SHOX2	OG12|OG12X|SHOT	short stature homeobox 2	protein-coding	nan	2.760	4.100	2.109	1.383	0.770	1.589	3.790	0.344	1.438	0.809	2.133	2.418	0.713	0.061	1.132	1.383	0.438	0.497	3.929	3.134	4.449	2.036	2.578	2.671	4.987	nan	2.499	3.527	4.701	4.180	0.661	1.380	2.118	2.379	2.135	3.191	1.524	1.118	0.951	1.318	0.412	0.892	1.589	2.133	0.654	1.230	0.664	0.878
6898	chr6	109405071	109417971	+	0	NA	intron (NM_014454, intron 1 of 9)	Tigger3b|DNA|TcMar-Tigger	4187	NM_014454	27244	Hs.591336	NM_014454	ENSG00000080546	SESN1	PA26|SEST1	sestrin 1	protein-coding	2.875	nan	nan	2.155	1.815	1.021	1.083	1.033	0.138	0.574	0.243	1.677	4.040	1.374	0.150	2.114	2.900	1.926	2.618	3.924	nan	3.838	1.621	4.278	4.382	1.888	2.104	1.041	1.551	nan	2.400	1.128	2.123	4.178	4.442	2.148	3.059	1.910	0.851	1.348	1.733	0.867	0.538	1.083	1.677	0.377	0.842	1.019	0.883
6655	chr6	21019748	21047076	+	0	NA	intron (NM_017774, intron 11 of 15)	intron (NM_017774, intron 11 of 15)	478711	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA	1.261	1.766	nan	1.779	2.924	1.249	0.378	0.939	0.112	0.735	0.585	1.688	nan	0.087	0.090	0.493	0.320	0.957	nan	0.762	0.887	nan	0.637	0.707	0.709	1.372	1.534	1.980	2.371	0.780	0.508	0.184	0.313	1.354	2.301	0.457	1.309	0.725	0.543	0.636	0.415	0.457	0.107	0.378	1.688	0.071	0.256	0.074	0.290
6629	chr6	16235926	16254056	+	0	NA	intron (NM_006877, intron 1 of 8)	intron (NM_006877, intron 1 of 8)	6180	NM_006877	2766	Hs.484741	NM_006877	ENSG00000137198	GMPR	GMPR 1|GMPR1	guanosine monophosphate reductase	protein-coding	2.608	nan	1.002	0.684	1.536	0.724	2.977	1.286	0.119	0.699	0.295	2.463	0.308	0.048	0.105	3.535	5.376	6.391	8.131	0.965	0.889	1.821	0.734	1.028	1.084	0.844	1.451	0.300	0.819	0.892	0.655	1.388	1.757	1.151	0.974	0.884	2.015	1.879	1.276	0.046	0.143	0.095	0.481	2.977	2.463	0.288	0.073	0.570	0.184
7077	chr6	158651945	158669467	+	0	NA	Intergenic	SVA_F|Other|Other	71327	NM_207118	404672	Hs.356224	NM_207118	ENSG00000272047	GTF2H5	C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2	general transcription factor IIH subunit 5	protein-coding	nan	1.268	2.054	1.615	0.583	0.323	1.514	0.619	0.128	0.510	0.252	1.598	2.680	0.985	0.103	2.897	3.330	1.906	2.391	1.792	nan	2.586	0.932	3.535	3.379	0.744	1.057	2.345	3.152	2.267	1.800	1.189	2.267	1.718	2.270	2.774	4.955	0.719	0.389	1.159	1.445	0.598	0.499	1.514	1.598	0.326	0.994	0.814	1.506
6275	chr5	56985511	56997924	+	0	NA	Intergenic	MamRep1527|LTR|LTR	45230	NR_104668	101928505	Hs.119998	NR_104668		LOC101928505	-	uncharacterized LOC101928505	ncRNA	nan	nan	0.750	0.014	0.154	0.130	0.268	0.433	0.103	0.051	0.053	0.019	0.350	6.592	0.204	0.247	0.195	1.449	2.274	0.141	0.135	nan	0.043	0.125	0.128	0.331	0.541	0.155	0.182	nan	0.122	0.064	0.106	0.096	0.147	0.224	0.484	0.335	0.312	0.049	0.086	0.031	0.044	0.268	0.019	0.031	0.082	0.024	0.071
5727	chr3	181993852	182004984	+	0	NA	Intergenic	Intergenic	204732	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA	1.048	1.736	1.370	3.450	1.123	0.755	0.141	0.122	0.072	1.273	0.377	1.923	1.306	0.049	0.056	0.391	0.231	0.137	0.256	1.684	1.414	8.149	3.474	0.142	0.164	0.528	0.705	5.626	4.552	0.647	0.286	0.223	0.280	1.777	1.726	0.133	0.307	1.302	0.911	0.350	0.263	0.247	0.618	0.141	1.923	0.034	0.145	0.070	0.057
7714	chr8	63412946	63416528	+	0	NA	intron (NR_130764, intron 1 of 6)	intron (NR_130764, intron 1 of 6)	253236	NM_001304533	286183	Hs.654662	NM_173688	ENSG00000185942	NKAIN3	FAM77D	Sodium/potassium transporting ATPase interacting 3	protein-coding	0.758	0.661	0.721	0.145	0.194	0.136	1.562	0.082	0.045	0.088	0.091	0.033	0.417		0.117	0.149	0.150	0.605	0.391	0.479	0.657	1.045	0.212	0.079	0.015	2.373	nan	0.126	0.123	nan	3.554	0.022	0.198	3.523	4.695	0.086	0.140	0.835	0.790	0.015	0.050	0.744	0.033	1.562	0.033	4.100	0.051	0.029	0.034
5620	chr3	156837849	156862172	+	0	NA	Intergenic	Intergenic	-9219	NR_034007	339894	Hs.478050	NR_034007	ENSG00000243629	LINC00880	-	long intergenic non-protein coding RNA 880	ncRNA	nan	2.259	1.070	0.589	1.278	0.767	2.122	0.317	0.219	0.702	0.376	0.620	1.506	0.076	0.089	0.836	0.910	1.416	2.531	1.505	1.394	5.168	1.470	0.541	0.639	0.593	nan	2.387	2.874	0.911	0.548	1.221	1.875	0.514	0.611	0.560	1.174	1.400	0.849	1.536	1.587	0.103	0.264	2.122	0.620	0.176	0.413	1.535	0.308
931	chr1	234719788	234768470	+	0	NA	intron (NM_001077397, intron 1 of 1)	intron (NM_001077397, intron 1 of 1)	1142	NM_182972	359948	Hs.350268	NM_182972	ENSG00000168264	IRF2BP2	-	interferon regulatory factor 2 binding protein 2	protein-coding	5.190	4.061	5.285	5.096	8.077	4.001	3.713	2.647	0.225	3.976	2.099	5.007	9.624	1.466	0.138	2.926	4.474	3.845	8.919	7.194	6.478	nan	1.516	4.630	4.565	2.719	3.639	nan	7.264	4.317	5.131	2.220	3.081	6.515	7.799	3.507	6.333	nan	1.321	2.540	2.316	2.303	2.268	3.713	5.007	1.028	1.701	1.706	2.860
6903	chr6	110839783	110891389	+	0	NA	Intergenic	Intergenic	-67742	NM_033125	85413	Hs.520319	NM_033125	ENSG00000004809	SLC22A16	CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 member 16	protein-coding	nan	0.860	nan	0.151	1.496	0.771	1.510	0.640	0.113	0.097	0.103	1.657	0.610	0.059	0.118	0.529	0.448	0.465	0.879	0.865	nan	nan	0.285	0.484	0.531	0.233	nan	0.203	0.254	0.455	0.235	0.213	0.324	0.422	0.442	0.190	nan	0.418	0.303	0.166	0.165	0.096	0.268	1.510	1.657	0.197	0.059	0.117	0.060
7185	chr7	18495654	18517443	+	0	NA	intron (NM_001204144, intron 3 of 12)	intron (NM_001204144, intron 3 of 12)	-28785	NM_001321894	9734	Hs.196054	NM_014707	ENSG00000048052	HDAC9	HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR	histone deacetylase 9	protein-coding	nan	1.708	nan	0.125	0.269	0.223	0.244	0.406	0.125	0.437	0.328	0.071	0.455	0.081	0.170	nan	0.517	4.570	5.319	0.844	1.034	1.005	0.339	0.248	0.273	1.373	1.545	0.303	0.337	0.338	0.153	0.127	0.235	0.996	1.042	0.352	0.923	0.864	0.628	0.056	0.200	0.258	0.640	0.244	0.071	0.040	0.134	0.088	0.074
4505	chr2	135277378	135325764	+	0	NA	intron (NM_030923, intron 4 of 7)	intron (NM_030923, intron 4 of 7)	175000	NM_030923	81615	Hs.369471	NM_030923	ENSG00000152128	TMEM163	DC29|SV31	transmembrane protein 163	protein-coding	8.035	4.241	8.293	0.738	0.374	0.197	0.553	0.081	0.066	0.439	0.330	0.121	0.542	0.047	0.069	0.297	0.215	0.202	0.278	0.679	0.671	2.928	0.897	0.128	0.159	0.464	0.682	0.640	nan	0.840	0.808	0.141	0.245	32.535	29.506	0.464	0.795	1.328	0.767	0.041	0.079	13.959	0.074	0.553	0.121	0.968	0.151	0.018	0.288
3319	chr17	19394466	19412311	+	0	NA	Intergenic	Intergenic	-33779	NM_018242	55244	Hs.232054	NM_018242	ENSG00000142494	SLC47A1	MATE1	solute carrier family 47 member 1	protein-coding	1.934	1.226	2.220	0.391	1.393	0.663	0.324	0.214	0.172	0.156	0.162	0.204	1.487	0.999	0.177	0.598	1.087	0.372	nan	1.071	0.960	1.096	0.282	0.420	0.436	0.557	0.897	1.343	2.129	nan	1.375	0.337	0.612	0.274	0.287	2.892	7.124	0.233	0.163	0.240	0.514	0.053	0.303	0.324	0.204	0.248	0.666	0.207	3.647
7975	chr8	142834283	142884721	+	0	NA	Intergenic	Intergenic	8172	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA	1.468	0.607	nan	0.062	0.470	0.241	0.884	0.088	0.086	0.062	0.079	0.327	1.261	0.039	0.050	0.236	0.142	0.129	0.145	nan	3.986	nan	0.071	0.140	0.170	0.638	0.862	0.337	0.588	1.141	1.488	0.373	0.353	0.176	0.171	1.144	2.275	0.286	0.316	4.194	1.840	0.051	0.052	0.884	0.327	0.238	0.024	0.045	1.514
8326	chr9	137961397	137985281	+	0	NA	intron (NM_014279, intron 1 of 5)	intron (NM_014279, intron 1 of 5)	-5767	NM_001282612	10439	Hs.522484	NM_006334	ENSG00000130558	OLFM1	AMY|NOE1|NOELIN1|OlfA	olfactomedin 1	protein-coding	nan	1.226	0.901	0.059	0.500	0.302	0.096	0.071	0.060	0.052	0.055	0.050	3.468	0.200	0.053	0.326	0.500	0.076	0.085	0.153	0.256	nan	0.038	0.059	0.041	1.019	1.469	0.143	0.143	3.021	4.559	0.285	0.519	0.339	0.376	0.635	1.106	0.158	0.264	3.237	0.292	0.070	0.003	0.096	0.050	1.064	0.323	0.095	0.189
3755	chr18	40174191	40228006	+	0	NA	intron (NR_046174, intron 7 of 9)	intron (NR_046174, intron 7 of 9)	434465	NR_046457	284260	Hs.652819	NR_046174	ENSG00000267586	LINC00907	-	long intergenic non-protein coding RNA 907	ncRNA	nan	0.882	0.936	2.186	0.565	0.299	0.710	0.052	0.060	0.988	0.466	0.670	0.543	0.026	0.070	0.421	0.274	0.203	0.279	1.484	1.581	8.668	4.456	0.090	0.073	1.498	1.739	4.864	3.786	0.599	0.341	0.050	0.117	2.855	3.517	0.388	nan	3.374	1.933	0.165	0.465	0.523	0.091	0.710	0.670	0.065	2.321	0.009	0.128
7444	chr7	114992546	115000908	+	0	NA	Intergenic	Intergenic	-125318	NR_126407	104355291		NR_126407	ENSG00000233607	LINC01392	-	long intergenic non-protein coding RNA 1392	ncRNA	nan	0.734	0.953	0.283	0.207	0.115	0.214	0.160	0.077	0.093	0.207	0.272	0.345	0.051	0.190	0.336	0.257	0.371	0.428	0.195	0.258	0.132	0.131	0.283	0.207	0.736	0.743	1.015	0.910	0.562	0.312	0.151	0.324	4.154	6.366	0.385	0.632	0.797	0.695	0.033	0.149	1.300	0.140	0.214	0.272	0.047	0.121	0.071	0.088
2219	chr12	133262147	133266391	+	0	NA	promoter-TSS (NM_006231)	promoter-TSS (NM_006231)	77	NM_018663	5827	Hs.430299	NM_018663	ENSG00000176894	PXMP2	PMP22	peroxisomal membrane protein 2	protein-coding	5.893	4.372	3.514	3.631	4.452	1.930	6.039	2.112	0.605	3.263	1.425	5.496	8.340	3.864	0.212	4.646	4.061	7.451	9.206	8.638	8.759	6.347	3.775	8.440	8.327	3.285	4.569	6.410	11.418	5.372	7.629	4.628	8.020	6.448	8.201	8.143	4.084	3.008	1.999	3.051	4.171	2.333	19.042	6.039	5.496	1.122	2.796	1.193	1.254
5482	chr3	115218668	115239032	+	0	NA	Intergenic	Intergenic	-113301	NM_002045	2596	Hs.134974	NM_002045	ENSG00000172020	GAP43	B-50|PP46	growth associated protein 43	protein-coding	0.895	nan	0.610	0.188	0.488	0.228	2.940	0.420	0.181	0.146	0.136	0.335	0.898	0.277	0.088	0.322	0.252	0.286	0.517	1.098	nan	0.767	0.375	0.265	0.252	nan	0.799	0.461	0.794	0.732	0.466	0.078	0.150	0.162	0.212	0.395	0.811	0.720	0.685	0.428	0.361	0.042	0.147	2.940	0.335	0.123	0.339	0.039	0.103
2464	chr13	113606024	113658206	+	0	NA	intron (NM_001112732, intron 1 of 29)	intron (NM_001112732, intron 1 of 29)	-1511	NM_001320816	23263	Hs.170422	NM_024979	ENSG00000126217	MCF2L	ARHGEF14|DBS|OST	MCF.2 cell line derived transforming sequence like	protein-coding	1.093	nan	1.801	2.637	1.212	0.675	1.307	0.060	0.049	0.766	0.351	3.559	1.559	0.081	0.055	4.764	7.328	0.657	0.921	3.583	3.089	3.463	1.097	0.585	0.593	0.041	0.067	4.575	5.534	0.707	0.795	2.027	2.737	1.478	1.101	0.166	0.199	0.666	0.488	3.473	3.248	0.152	0.729	1.307	3.559	0.482	2.333	1.020	0.031
1077	chr10	25347315	25358634	+	0	NA	Intergenic	Intergenic	-1766	NM_001270383	219670	Hs.534486	NM_145010	ENSG00000151023	ENKUR	C10orf63|CFAP106	enkurin, TRPC channel interacting protein	protein-coding	0.660	1.293	0.856	0.179	0.880	0.410	0.517	0.588	0.213	0.180	0.154	0.086	0.464	0.038	0.064	0.282	0.218	1.034	3.617	0.221	0.221	7.608	2.370	0.151	0.130	0.774	1.095	0.127	0.168	0.299	0.246	0.181	0.147	0.538	0.830	0.196	0.297	0.600	0.540	0.079	0.102	0.042	0.028	0.517	0.086	0.043	0.537	0.009	0.087
5413	chr3	79018669	79038099	+	0	NA	intron (NM_002941, intron 3 of 30)	intron (NM_002941, intron 3 of 30)	40225	NM_001145845	6091	Hs.744218	NM_002941	ENSG00000169855	ROBO1	DUTT1|SAX3	roundabout guidance receptor 1	protein-coding	1.117	0.711	1.277	0.155	0.535	0.270	0.105	0.181	0.075	0.713	0.549	0.306	0.349	0.051	0.072	0.138	0.104	0.525	nan	0.493	0.614	1.031	0.338	0.091	0.111	0.740	1.056	0.651	0.586	6.909	5.338	0.123	0.126	1.046	2.042	1.409	nan	0.253	0.224		0.031	0.347	0.221	0.105	0.306	0.175	0.173	0.020	0.725
6178	chr5	12882150	12891662	+	0	NA	Intergenic	MLT1F2-int|LTR|ERVL-MaLR	218935	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA	nan	nan	nan	0.285	0.276	0.084	0.283	0.261	0.226	0.113	0.156	0.038	nan	0.046	0.108	0.453	0.271	0.273	0.234	0.279	0.381	0.149	0.089	0.125	0.158	4.587	4.437	0.455	0.545	1.145	0.580	0.108	0.201	0.098	0.081	0.454	nan	1.059	0.650	0.030	0.091	0.010		0.283	0.038		0.075	0.023	0.066
1299	chr11	10827990	10832167	+	0	NA	promoter-TSS (NM_001172705)	promoter-TSS (NM_001172705)	504	NM_001418	1982	Hs.183684	NM_001418	ENSG00000110321	EIF4G2	AAG1|DAP5|NAT1|P97	eukaryotic translation initiation factor 4 gamma 2	protein-coding	6.205	6.128	8.871	11.078	6.838	3.451	6.685	4.045	0.229	4.295	1.640	13.114	15.665	6.209	0.179	nan	14.668	10.428	14.438	20.344	18.921	13.836	7.112	15.991	17.569	7.116	nan	8.200	11.272	12.810	13.765	8.256	17.106	10.668	10.040	9.267	6.891	4.919	nan	6.616	9.133	2.199	4.036	6.685	13.114	1.444	1.555	4.703	2.630
967	chr1	244995724	245007596	+	0	NA	intron (NM_001312872, intron 2 of 4)	L2a|LINE|L2	2882	NM_001312873	116228	Hs.411490	NM_198076	ENSG00000203667	COX20	FAM36A	COX20, cytochrome c oxidase assembly factor	protein-coding	nan	5.234	nan	6.796	8.016	4.585	4.732	3.153	0.710	3.555	1.780	5.295	8.152	3.847	0.202	6.478	6.489	8.670	10.865	8.935	7.546	8.438	5.619	17.080	18.613	3.140	3.682	5.600	8.577	5.211	6.349	3.775	4.275	7.026	7.125	6.046	5.116	2.636	1.457	4.319	2.729	1.267	2.362	4.732	5.295	1.020	2.087	1.911	1.960
1611	chr11	105881770	105894953	+	0	NA	intron (NM_001318750, intron 1 of 2)	intron (NM_001318750, intron 1 of 2)	4653	NM_001318750	84437	Hs.266782	NM_032424	ENSG00000170903	MSANTD4	KIAA1826	Myb/SANT DNA binding domain containing 4 with coiled-coils	protein-coding	0.886	1.109	0.583	0.734	0.697	0.353	0.886	0.215		0.826	0.441	0.656	1.904	0.479	0.158	6.622	6.701	0.233	0.301	1.272	1.117	1.446	0.492	2.961	3.042	3.948	4.237	1.206	1.552	2.125	2.010	1.240	2.442	0.935	1.249	0.353	0.848	1.138	0.575	0.448	0.474	0.144	0.988	0.886	0.656	0.287	0.470	0.622	0.132
5109	chr21	36232564	36265482	+	0	NA	intron (NM_001001890, intron 2 of 5)	intron (NM_001001890, intron 2 of 5)	11964	NM_001122607	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding	1.464	0.891	1.765	0.609	0.945	0.492	1.201	1.126	0.171	0.186	0.136	1.723	2.741	0.132	0.077	1.261	1.497	3.691	6.769	4.829	4.035	1.165	0.401	4.191	4.222	0.141	0.275	1.787	2.588	0.799	0.762	1.211	1.407	0.307	0.292	0.261	0.288	nan	0.503	2.241	2.740	0.020	0.248	1.201	1.723	0.222	0.416	0.329	0.072
322	chr1	57903064	57919406	+	0	NA	intron (NM_021080, intron 3 of 16)	intron (NM_021080, intron 3 of 16)	-414980	NR_104363	101926890	Hs.662207	NR_104362	ENSG00000226759	DAB1-AS1	-	DAB1 antisense RNA 1	ncRNA	1.107	0.842	1.044	0.098	0.297	0.130	0.180	0.092	0.040	0.039	0.147	0.044	0.290	0.046	0.134	0.364	0.177	0.303	0.199	0.408	0.492	0.149	0.053	0.238	0.250	0.197	0.352	0.357	0.370	0.488	0.297	0.146	0.199	0.033	0.046	1.682	6.215	0.482	0.562	0.017	0.081	0.012	0.049	0.180	0.044	0.047	0.006	0.024	2.215
6689	chr6	27772945	27810365	+	0	NA	promoter-TSS (NM_021968)	promoter-TSS (NM_021968)	-248	NM_021968	8363	Hs.278483	NM_021968	ENSG00000197238	HIST1H4J	H4/e|H4F2iv|H4FE|dJ160A22.2	histone cluster 1 H4 family member j	protein-coding	3.579	3.018	nan	4.649	4.175	2.165	0.664	1.763	0.296	1.633	0.954	4.797	nan	7.522	0.260	7.226	8.957	5.363	nan	6.150	3.768	nan	5.327	10.111	9.821	2.874	3.589	4.898	6.125	1.712	1.913	1.343	3.082	4.573	3.740	8.367	9.165	2.590	1.415	1.439	3.851	0.599	1.666	0.664	4.797	0.804	1.919	1.829	3.148
4101	chr19	46146406	46173035	+	0	NA	Intergenic	AluSq|SINE|Alu	-10945	NM_001193268	24139	Hs.24178	NM_012155	ENSG00000125746	EML2	ELP70|EMAP-2|EMAP2	echinoderm microtubule associated protein like 2	protein-coding	1.530	0.920	1.092	0.397	0.437	0.234	0.315	0.122	0.157	0.141	0.122	0.258	0.678	0.659	0.106	0.311	0.375	0.317	0.512	0.875	0.902	1.098	0.296	0.377	0.409	0.589	0.895	1.630	2.336	2.922	2.400	0.312	0.415	0.476	0.484	2.894	8.026	0.944	0.687	0.100	0.641	0.104	0.098	0.315	0.258	0.308	0.712	0.136	3.193
3850	chr18	56881936	56899650	+	0	NA	intron (NM_001012512, intron 1 of 2)	intron (NM_001012512, intron 1 of 2)	3393	NM_001012512	2922	Hs.153444	NM_002091	ENSG00000134443	GRP	BN|GRP-10|preproGRP|proGRP	gastrin releasing peptide	protein-coding	nan	1.212	0.744	3.502	0.265	0.136	0.312	0.027	0.018	0.273	0.224	4.127	6.385	0.025	0.060	0.370	0.191	0.167	0.216	7.474	8.687	2.316	0.612	0.363	0.366	0.124	0.199	5.960	4.539	0.335	0.200	0.133	0.170	1.458	0.798	0.178	0.344	nan	2.022	0.351	0.181	0.385	0.081	0.312	4.127	0.044	1.021	0.022	0.035
6866	chr6	88554434	88559751	+	0	NA	intron (NR_110869, intron 2 of 4)	L1ME3|LINE|L1	62514	NR_110869	101928911	Hs.571178	NR_110869		LOC101928911	-	uncharacterized LOC101928911	ncRNA	0.933	0.893	nan	0.136	0.323	0.121	0.193	0.082	0.106	0.118	0.123	0.310	0.948	0.020	0.168	0.412	0.291	8.051	3.720	0.449	0.381	0.141	0.054	0.253	0.241	0.467	0.640	0.359	0.374	0.523	0.219	0.197	0.301	0.096	0.056	0.274	0.392	0.460	0.402	0.068	0.101	0.018	0.103	0.193	0.310	0.073	0.058	0.055	0.049
699	chr1	182143296	182159502	+	0	NA	Intergenic	Intergenic	-120552	NM_001009992	127665	Hs.684328	NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding	nan	nan	1.127	0.444	0.269	0.167	1.127	0.133	0.089	0.206	0.192	0.081	1.737	0.034	0.124	0.500	0.308	1.974	8.077	0.325	nan	0.182	0.097	nan	0.400	1.111	1.503	0.410	0.481	0.340	0.189	0.462	0.607	0.562	0.795	0.332	nan	0.567	0.491	0.062	0.233	0.065	0.044	1.127	0.081	0.095	0.031	0.092	0.169
960	chr1	243853515	243862569	+	0	NA	intron (NM_001206729, intron 3 of 13)	intron (NM_001206729, intron 3 of 13)	148542	NM_181690	10000	Hs.498292	NM_005465	ENSG00000117020	AKT3	MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2	AKT serine/threonine kinase 3	protein-coding	nan	1.317	nan	0.260	0.668	0.301	0.162	0.328	0.090	0.156	0.264	0.264	0.204		0.114	0.396	0.271	0.244	0.272	0.561	0.740	0.434	0.225	0.348	0.410	4.928	4.419	0.479	0.392	0.932	0.481	0.062	0.169	0.194	0.279	0.656	1.840	0.462	0.332	0.055	0.069	0.031	0.195	0.162	0.264	0.269	0.044	0.066	0.336
5195	chr22	21396526	21404166	+	0	NA	promoter-TSS (NM_001291006)	promoter-TSS (NM_001291006)	97	NR_110991	400891	Hs.291198	NM_001013675	ENSG00000187905	LRRC74B	-	leucine rich repeat containing 74B	protein-coding	1.614	nan	3.653	1.727	0.536	0.253	0.923	0.409	0.065	0.511	0.209	0.563	1.570	0.255	0.048	0.903	1.760	0.288	0.438	5.390	4.549	5.043	1.402	0.758	0.817	1.211	2.170	4.785	6.259	1.379	1.521	0.354	0.504	0.973	0.529	0.912	0.769	5.848	3.373	0.634	1.236	0.263	0.135	0.923	0.563	0.306	1.210	0.106	0.194
818	chr1	205546597	205552970	+	0	NA	intron (NM_181644, intron 2 of 9)	intron (NM_181644, intron 2 of 9)	11671	NM_181644	148808	Hs.567714	NM_181644	ENSG00000174514	MFSD4A	MFSD4|UNQ3064	major facilitator superfamily domain containing 4A	protein-coding	1.029	7.284	0.995	0.320	0.485	0.352	0.362	0.116	0.128	0.296	0.090	0.309	3.847	0.070	0.134	0.577	0.502	0.732	1.719	1.411	1.341	0.676	0.355	nan	nan	0.289	0.598	0.550	0.777	0.434	0.365	0.302	0.333	0.572	0.653	0.674	1.106	0.951	0.706	1.020	0.512	0.060	0.087	0.362	0.309	0.045	0.089	0.045	0.214
8263	chr9	126042256	126048477	+	0	NA	Intergenic	L2|LINE|L2	-14511	NM_001171137	55342	Hs.287659	NM_018387	ENSG00000165209	STRBP	HEL162|ILF3L|SPNR|p74	spermatid perinuclear RNA binding protein	protein-coding	nan	nan	0.652	0.283	0.291	0.388	0.451	0.058	0.104	0.637	0.161	0.133	nan	0.035	0.065	0.242	0.340	0.299	0.295	0.311	0.457	2.702	0.879	0.339	0.314	0.308	nan	0.387	0.500	0.452	0.269	0.152	0.191	0.462	0.558	0.163	0.378	nan	1.903	0.061	0.085	0.031	0.038	0.451	0.133	0.015	4.800	0.079	0.160
2908	chr15	64779583	64825474	+	0	NA	intron (NM_015042, intron 1 of 8)	AluJo|SINE|Alu	10909	NM_015042	23060	Hs.595451	NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding	1.095	1.090	nan	0.128	0.432	0.206	0.116	0.356	0.147	0.184	0.174	0.211	0.429	0.103	0.100	0.437	0.499	0.373	0.725	0.381	0.475	nan	0.160	0.280	0.285	0.741	1.083	0.536	0.604	1.644	1.022	0.265	0.477	0.227	0.377	1.457	4.115	0.455	0.401	0.069	0.122	0.050	0.094	0.116	0.211	0.098	0.075	0.111	1.857
4483	chr2	121790675	121799321	+	0	NA	Intergenic	HAL1|LINE|L1	240131	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding	1.412	nan	nan	0.106	0.200	0.166	0.241	0.080	0.074	0.059	0.152	0.186	2.096	0.038	0.065	0.491	0.428	0.202	0.405	0.459	0.693	0.964	0.259	0.587	0.587	0.469	1.008	4.319	4.929	1.245	1.652	0.278	0.374	0.984	0.713	0.208	0.339	1.121	0.773	9.311	1.522	0.383	0.192	0.241	0.186	0.621	0.106	0.205	0.128
5291	chr22	44565697	44577246	+	0	NA	intron (NM_001137605, intron 1 of 13)	intron (NM_001137605, intron 1 of 13)	2635	NM_001137605	64098	Hs.658995	NM_022141	ENSG00000138964	PARVG	-	parvin gamma	protein-coding	0.778	nan	0.490	1.006	0.322	0.180	0.556	0.123	0.055	0.690	0.166	5.410	1.658	0.084	0.065	0.310	0.374	0.355	0.660	1.751	1.326	2.735	1.244	0.414	0.500	0.146	nan	2.577	2.855	nan	0.195	0.142	0.258	0.296	0.276	0.225	0.382	0.545	0.477	0.131	0.935	0.042	0.109	0.556	5.410	0.084	0.175	0.017	0.063
4758	chr2	235400992	235423479	+	0	NA	Intergenic	Intergenic	-6538	NM_001282431	10123	Hs.111554	NM_005737	ENSG00000188042	ARL4C	ARL7|LAK	ADP ribosylation factor like GTPase 4C	protein-coding	2.439	nan	2.245	0.861	1.520	0.809	2.489	0.156	0.072	0.802	0.581	1.658	5.398	0.120	0.124	0.368	0.271	0.828	1.359	2.783	1.827	3.392	1.076	0.552	0.616	0.859	1.187	1.633	nan	1.179	1.534	0.376	0.536	1.592	1.664	1.165	2.620	1.330	0.749	1.510	1.026	0.574	0.551	2.489	1.658	0.323	1.223	0.101	0.403
7070	chr6	157796789	157803849	+	0	NA	Intergenic	L1MC5|LINE|L1	-2238	NM_153746	79683	Hs.596214	NM_024630	ENSG00000175048	ZDHHC14	NEW1CP	zinc finger DHHC-type containing 14	protein-coding	nan	1.851	5.605	4.606	2.975	1.656	3.917	0.881	0.137	1.312	0.602	3.672	7.902	2.815	0.148	1.961	3.324	2.258	3.213	5.994	nan	10.283	3.150	2.975	3.022	0.854	1.275	5.935	6.169	2.930	3.485	0.825	2.247	6.249	6.608	2.055	nan	2.934	1.255	2.570	4.775	1.587	1.314	3.917	3.672	0.813	8.043	0.801	1.015
3288	chr17	15861178	15877377	+	0	NA	intron (NM_000676, intron 1 of 1)	intron (NM_000676, intron 1 of 1)	21046	NM_000676	136	Hs.167046	NM_000676	ENSG00000170425	ADORA2B	ADORA2	adenosine A2b receptor	protein-coding	1.250	1.612	0.667	0.097	0.613	0.279	3.441	0.683	0.218	0.098	0.067	0.125	0.471	0.062	0.028	1.470	2.315	1.392	nan	0.665	0.697	1.008	0.245	0.374	0.307	0.204	0.332	0.769	0.820	nan	0.695	0.378	0.536	0.099	0.245	0.433	1.708	0.378	0.394	0.100	0.516	0.024	0.055	3.441	0.125	0.245	0.802	0.313	0.431
6124	chr5	890125	897898	+	0	NA	intron (NM_004237, intron 1 of 12)	intron (NM_004237, intron 1 of 12)	1042	NM_004237	9319	Hs.436187	NM_004237	ENSG00000071539	TRIP13	16E1BP	thyroid hormone receptor interactor 13	protein-coding	2.275	2.137	5.586	3.932	2.010	1.093	2.389	2.002	0.165	3.278	1.152	3.092	4.525	2.219	0.124	3.421	2.985	3.067	nan	4.997	4.504	4.057	1.326	2.349	2.405	3.974	6.342	nan	9.236	nan	4.801	1.345	2.881	2.461	2.526	1.431	1.869	2.844	nan	1.178	1.920	0.448	0.685	2.389	3.092	1.259	2.166	0.611	0.590
2527	chr14	30584698	30613801	+	0	NA	Intergenic	LTR33B|LTR|ERVL	-202301	NM_001330069	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding	1.183	0.825	0.798	0.196	0.385	0.204	0.167	1.262	0.298	0.054	0.124	0.235	0.571	0.056	0.130	0.191	0.157	0.225	0.252	0.458	0.526	0.574	0.200	0.214	0.228	3.743	3.942	0.325	0.304	0.918	0.598	0.106	0.156	0.355	0.340	0.166	0.369	0.515	0.462	0.123	0.101	0.095	0.074	0.167	0.235	0.054	0.091	0.034	0.121
6581	chr6	2102703	2112203	+	0	NA	intron (NM_001500, intron 4 of 10)	intron (NM_001500, intron 4 of 10)	68772	NM_001253846	2762	Hs.144496	NM_001500	ENSG00000112699	GMDS	GMD|SDR3E1	GDP-mannose 4,6-dehydratase	protein-coding	1.363	1.159	1.423	1.096	3.502	1.847	0.604	2.030	0.165	0.329	0.340	0.947	0.369	0.137	0.140	0.353	0.260	0.873	1.947	1.182	1.202	3.116	0.909	0.517	0.545	0.635	0.831	1.061	0.980	0.569	0.282	0.192	0.332	2.788	4.141	0.927	1.599	2.169	1.027	0.311	0.342	0.988	3.518	0.604	0.947	0.441	1.021	0.084	0.953
6974	chr6	134392809	134403511	+	0	NA	Intergenic	L1MA8|LINE|L1	-24371	NM_145176	154091	Hs.486508	NM_145176	ENSG00000146411	SLC2A12	GLUT12|GLUT8	solute carrier family 2 member 12	protein-coding	1.081	1.448	1.388	1.598	1.152	0.524	5.106	0.088	0.075	0.423	0.254	2.438	6.949	0.062	0.105	0.586	0.752	0.545	2.041	3.964	3.972	nan	5.599	0.280	0.311	0.348	0.502	0.699	0.922	0.462	0.252	0.406	0.439	3.766	3.177	0.142	nan	1.364	1.003	0.505	4.574	0.883	0.587	5.106	2.438	0.064	0.057	0.213	0.092
1346	chr11	22576704	22584182	+	0	NA	Intergenic	Intergenic	-66878	NR_120583	102723378	Hs.374255	NR_120583	ENSG00000255323	LINC01495	-	long intergenic non-protein coding RNA 1495	ncRNA	1.839	0.851	1.914	0.190	0.177	0.046	0.513	0.298	0.066	0.461	0.357	0.351	0.489	0.053	0.074	0.896	1.998	0.385	0.568	2.717	3.728	0.111	0.089	0.219	0.243	8.996	9.696	0.238	0.330	3.358	3.121	0.147	0.335	3.063	3.457	0.678	0.923	0.541	0.514	0.108	0.201	1.045	0.503	0.513	0.351	1.103	0.041	0.039	0.280
8004	chr8	145702676	145716350	+	0	NA	intron (NM_032902, intron 2 of 12)	intron (NM_032902, intron 2 of 12)	5779	NM_001329445	84988	Hs.521937	NM_032902	ENSG00000160972	PPP1R16A	MYPT3	protein phosphatase 1 regulatory subunit 16A	protein-coding	1.744	0.943	nan	1.405	1.588	0.489	1.188	0.350	0.211	0.252	0.109	1.212	3.411	0.601	0.097	1.133	1.471	1.370	1.944	nan	2.506	nan	0.488	1.649	1.591	0.885	1.396	1.006	1.280	0.915	1.078	5.373	3.819	0.615	0.637	0.793	1.430	1.254	0.536	0.522	1.234	0.105	0.915	1.188	1.212	0.240	0.954	0.800	0.226
2818	chr15	23803853	23818508	+	0	NA	exon (NM_005664, exon 1 of 1)	exon (NM_005664, exon 1 of 1)	726	NM_005664	7681	Hs.72964	NM_005664	ENSG00000179455	MKRN3	CPPB2|D15S9|RNF63|ZFP127|ZNF127	makorin ring finger protein 3	protein-coding	nan	0.598	nan	1.698	3.754	1.950	1.576	0.790	0.054	1.026	0.527	2.068	0.382	1.174	0.130	3.895	3.974	4.617	3.525	0.434	0.545	5.804	2.272	0.519	0.493	1.472	2.200	3.053	4.581	nan	6.797	2.014	3.727	2.406	2.165	3.633	2.973	2.708	1.474	0.149	0.817	0.355	0.720	1.576	2.068	0.351	1.087	0.913	0.907
7356	chr7	81819325	81845769	+	0	NA	intron (NM_000722, intron 3 of 38)	HERVL18-int|LTR|ERVL	194054	NR_110077	101927356	Hs.571348	NR_110076	ENSG00000223770	LOC101927356	-	uncharacterized LOC101927356	ncRNA	1.148	0.791	1.042	0.336	0.830	0.484	0.213	0.181	0.072	0.479	0.364	0.520	0.592	0.127	0.128	0.443	0.321	0.204	0.255	0.520	0.674	4.485	1.078	0.138	0.133	0.977	1.281	0.603	0.589	0.587	0.300	0.144	0.213	2.994	3.603	1.074	nan	0.610	0.486	0.118	0.124	0.382	0.120	0.213	0.520	0.088	0.115	0.056	0.290
2424	chr13	105754411	105759264	+	0	NA	Intergenic	Intergenic	-361379	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding	0.670	0.934	0.565	0.073	0.163	0.006	0.169	0.063		0.065	0.083	0.114	0.322	0.022	0.049	1.209	0.618	9.956	4.018	0.362	0.430	0.216	0.162	3.870	3.673	0.250	nan	0.304	0.337	0.386	0.218	0.099	0.206	0.050	0.104	0.381	nan	0.077	0.112	0.044	0.110	0.020	0.017	0.169	0.114	0.080	0.011	0.062	0.076
3471	chr17	55732030	55759833	+	0	NA	intron (NM_138962, intron 11 of 13)	intron (NM_138962, intron 11 of 13)	-60158	NR_110807	101927539	Hs.680439	NR_110807	ENSG00000263499	LOC101927539	-	uncharacterized LOC101927539	ncRNA	1.727	1.701	1.117	0.728	3.226	1.676	1.242	0.162	0.075	0.725	0.561	1.183	1.372	0.055	0.105	6.546	7.234	3.454	2.899	2.129	1.926	3.275	1.586	nan	3.853	1.132	1.484	nan	nan	1.561	1.524	2.510	5.017	1.282	1.307	1.303	2.669	1.703	1.038	2.416	1.858	0.318	1.232	1.242	1.183	0.563	0.584	3.858	1.210
891	chr1	225876938	225892547	+	0	NA	Intergenic	Intergenic	-43897	NM_018212	55740	Hs.497893	NM_018212	ENSG00000154380	ENAH	ENA|MENA|NDPP1	enabled homolog (Drosophila)	protein-coding	1.287	nan	1.202	0.360	0.470	0.275	0.567	1.406	0.340	0.243	0.210	0.191	0.495	0.132	0.160	0.494	0.361	2.784	9.055	0.514	nan	0.948	0.591	0.500	0.440	0.417	0.603	0.782	0.890	0.485	0.292	0.137	0.221	0.154	0.216	0.578	0.825	0.800	0.554	0.089	0.051	0.018	0.853	0.567	0.191	0.099	0.158	0.050	0.192
2106	chr12	103630833	103648495	+	0	NA	intron (NR_103526, intron 10 of 10)	L2c|LINE|L2	94044	NR_126333	101929058	Hs.171310	NR_126333	ENSG00000257860	LOC101929058	-	uncharacterized LOC101929058	ncRNA	0.927	2.103	nan	5.763	3.793	2.162	1.111	0.106	0.137	3.814	1.790	6.739	3.385	0.031	0.094	0.252	0.161	0.205	0.184	4.044	4.892	5.720	4.245	0.113	0.122	0.229	0.354	7.545	10.079	0.811	0.389	0.095	0.142	1.790	2.374	0.423	0.794	5.045	1.974	8.054	2.595	0.392	0.051	1.111	6.739	0.016	3.687	0.028	0.175
8233	chr9	110044292	110048855	+	0	NA	promoter-TSS (NM_001244713)	promoter-TSS (NM_001244713)	239	NM_001244724	5887	Hs.521640	NM_002874	ENSG00000119318	RAD23B	HHR23B|HR23B|P58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	5.283	3.903	5.999	8.056	5.782	3.654	4.319	3.425	0.370	3.033	1.444	5.456	9.472	3.776	0.088	2.941	2.861	8.086	12.269	9.389	8.038	5.768	2.700	13.430	14.416	2.701	3.666	6.570	12.683	14.116	14.602	1.669	4.371	6.967	7.237	8.678	6.492	nan	1.471	1.631	2.489	1.903	3.386	4.319	5.456	1.336	2.634	1.293	1.982
7538	chr7	150658029	150686327	+	0	NA	intron (NM_172056, intron 1 of 8)	CpG	3224	NM_172056	3757	Hs.647099	NM_000238	ENSG00000055118	KCNH2	ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1	potassium voltage-gated channel subfamily H member 2	protein-coding	1.620	0.840	nan	2.441	2.114	1.037	0.916	0.093	0.096	1.970	0.890	5.765	3.780	0.411	0.128	1.594	3.029	0.798	0.890	5.917	5.395	3.140	0.845	0.591	0.568	0.738	1.091	3.435	3.393	1.391	1.370	1.019	1.351	2.128	1.621	0.995	1.848	2.278	1.143	2.518	4.386	0.525	0.249	0.916	5.765	0.579	1.878	0.680	0.184
8247	chr9	116168695	116174255	+	0	NA	intron (NM_017443, intron 4 of 4)	AluSx|SINE|Alu	-1449	NM_001278629	257169	Hs.632691	NM_152786	ENSG00000157653	C9orf43	-	chromosome 9 open reading frame 43	protein-coding	3.778	2.484	nan	6.520	4.070	1.904	4.487	2.157	0.462	1.721	1.093	4.213	6.963	2.488	0.156	3.318	2.952	5.881	8.605	7.231	6.892	4.916	1.912	11.601	12.414	2.056	2.611	7.781	nan	11.763	11.605	2.151	3.633	6.194	6.038	5.218	7.308	nan	1.900	3.196	2.185	1.015	1.660	4.487	4.213	1.526	2.470	1.270	2.086
1738	chr11	130860689	130870705	+	0	NA	Intergenic	Intergenic	-79315	NM_001347925	399979	Hs.444024	NM_014758	ENSG00000120451	SNX19	CHET8	sorting nexin 19	protein-coding	0.469	nan	0.580	0.105	0.164	0.210	0.202	0.075	0.048	0.078	0.082	0.048	nan	0.043	0.143	0.465	0.295	0.151	0.236	0.171	0.326	0.122	0.113	0.108	0.100	0.167	0.277	0.156	0.139	0.347	0.210	0.613	0.635	0.060	0.114	0.166	0.218	0.245	0.341	6.113	0.026	0.057	0.016	0.202	0.048	0.010	0.071	0.117	0.025
2025	chr12	75939480	75958834	+	0	NA	Intergenic	L2a|LINE|L2	-43739	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding	nan	0.999	0.620	0.174	0.408	0.220	0.369	0.450	0.298	0.254	0.166	0.265	2.179	0.074	0.072	0.357	0.272	0.613	2.215	0.616	0.653	0.413	0.131	0.244	0.266	4.013	3.766	nan	0.842	0.837	0.471	0.208	0.306	0.190	0.190	0.204	0.439	nan	0.848	0.026	0.142	0.074	0.099	0.369	0.265	0.086	0.175	0.074	0.142
7820	chr8	98271417	98291360	+	0	NA	intron (NR_125390, intron 2 of 2)	intron (NR_125390, intron 2 of 2)	8788	NM_033512	85453	Hs.173094	NM_033512	ENSG00000180543	TSPYL5	-	TSPY like 5	protein-coding	nan	1.263	2.281	0.558	1.297	0.700	0.804	0.565	0.113	0.243	0.190	1.441	2.273	0.338	0.068	0.339	0.342	0.209	nan	1.776	1.934	3.912	1.140	2.080	2.161	0.753	1.282	1.855	2.572	1.278	1.419	0.394	0.754	0.910	0.906	1.412	2.787	0.505	0.428	0.106	0.626	0.123	0.315	0.804	1.441	0.199	0.711	0.108	0.678
3920	chr18	77327174	77340989	+	0	NA	Intergenic	Intergenic	105664	NR_136643	284241		NR_136643	ENSG00000178412	LOC284241	-	uncharacterized LOC284241	ncRNA	nan	nan	0.824	0.096	0.269	0.156	3.557	0.065	0.035	0.159	0.048	0.383	2.506	0.039	0.072	0.386	0.475	0.405	0.598	1.812	nan	1.233	0.367	0.227	0.254	0.128	0.231	0.106	nan	0.582	0.703	0.183	0.149	0.323	0.304	0.063	0.083	0.701	0.543	5.546	0.045	0.014	0.072	3.557	0.383	0.367	0.956	0.043	0.049
5842	chr4	16115664	16147678	+	0	NA	Intergenic	AluJb|SINE|Alu	-46048	NM_001145848	8842	Hs.614734	NM_006017	ENSG00000007062	PROM1	AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4	prominin 1	protein-coding	nan	nan	nan	2.133	0.775	0.330	0.579	0.508	0.070	0.595	0.339	2.848	0.973	0.027	0.082	0.596	0.649	2.323	7.615	1.628	1.973	6.192	2.291	0.327	0.349	0.221	0.373	1.995	2.604	0.344	0.145	0.203	0.336	0.684	0.511	0.312	0.708	nan	1.383	0.134	0.498	0.169	0.187	0.579	2.848	0.124	0.607	0.072	0.337
6645	chr6	19798988	19812324	+	0	NA	promoter-TSS (NR_134651)	promoter-TSS (NR_134651)	-666	NR_134651	100506885	Hs.346489	NR_134649	ENSG00000228412	LOC100506885	-	uncharacterized LOC100506885	ncRNA	2.332	nan	1.948	2.629	3.623	1.860	3.637	2.906	0.254	0.942	0.561	8.178	5.346	5.366	0.169	1.910	1.321	5.423	8.021	3.231	2.835	4.625	2.120	5.578	5.641	2.312	2.769	0.697	0.872	1.406	0.789	0.987	1.255	2.958	4.078	1.390	1.492	2.802	1.525	1.063	2.190	0.705	2.231	3.637	8.178	0.832	1.643	0.813	0.265
511	chr1	148547923	148558254	+	0	NA	intron (NR_104217, intron 2 of 17).2	AluSx1|SINE|Alu	-5100	NM_001170755	284565	Hs.523572	NM_173638	ENSG00000266338	NBPF15	AB14|AG3|NBPF16	neuroblastoma breakpoint family member 15	protein-coding	2.195	nan	1.882	1.253	1.478	0.775	1.521	1.613	0.250	0.699	0.666	1.329	8.965	1.745	0.154	1.217	1.364	1.623	2.517	2.437	2.063	1.758	0.496	1.530	1.645	2.612	3.256	1.495	1.834	1.555	1.605	1.805	3.414	1.071	0.953	1.954	2.878	1.562	0.926	0.824	2.142	0.398	0.292	1.521	1.329	0.409	3.443	1.366	1.008
2367	chr13	90017405	90029983	+	0	NA	Intergenic	L1MC4|LINE|L1	129069	NR_131228	105370308	Hs.599406	NR_131228	ENSG00000226037	LINC01040	TCONS_00021682	long intergenic non-protein coding RNA 1040	ncRNA	0.585	7.640	0.686	0.094	0.274	0.140	0.153	0.231	0.128	0.089	0.077	0.096	0.258	0.009	0.097	0.499	0.350	0.238	0.257	0.264	0.428	0.213	0.112	0.149	0.099	0.135	0.107	0.549	0.543	0.281	0.154	0.131	0.338	0.147	0.176	0.285	0.326	0.120	0.158	0.040	0.099		0.026	0.153	0.096		0.032	0.024	0.010
899	chr1	226611820	226626438	+	0	NA	Intergenic	AluJb|SINE|Alu	-23328	NM_001618	142	Hs.177766	NM_001618	ENSG00000143799	PARP1	ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1	poly(ADP-ribose) polymerase 1	protein-coding	1.435	nan	1.657	0.316	1.651	0.774	0.689	0.109	0.055	0.355	0.230	0.496	1.279	0.049	0.108	0.467	0.442	0.394	0.561	1.151	nan	1.906	0.431	0.415	0.487	0.460	0.830	0.906	0.956	1.040	0.947	0.136	0.155	1.183	0.916	0.433	0.611	1.243	0.751	1.656	0.367	0.485	4.993	0.689	0.496	0.172	0.093	0.020	0.184
2689	chr14	77667251	77680167	+	0	NA	intron (NM_020431, intron 1 of 23)	MIR|SINE|MIR	25607	NM_020431	57156	Hs.22452	NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|hsCSC1	transmembrane protein 63C	protein-coding	3.000	2.457	1.163	1.801	1.819	0.871	1.168	0.104	0.047	1.068	0.417	2.124	2.397	0.058	0.108	0.392	0.382	0.128	0.147	2.474	3.570	1.925	0.873	0.236	0.211	0.723	1.233	6.155	nan	1.746	1.353	0.361	0.559	2.518	2.043	0.464	0.853	4.070	nan	5.828	0.497	0.767	0.266	1.168	2.124	0.496	1.189	0.232	0.148
3765	chr18	42318831	42326613	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	61859	NM_015559	26040	Hs.435458	NM_015559	ENSG00000152217	SETBP1	MRD29|SEB	SET binding protein 1	protein-coding	nan	1.968	4.685	1.095	0.945	0.442	6.626	0.503	0.020	1.328	0.807	2.031	2.461	0.014	0.063	4.769	6.212	0.538	1.099	8.467	8.142	2.969	0.999	0.049	0.069	2.062	2.713	0.648	0.765	8.930	10.640	1.211	2.021	7.189	7.883	2.621	nan	6.465	3.575	1.522	0.207	3.424	5.321	6.626	2.031	1.931	0.770	0.610	2.052
5924	chr4	68264106	68266863	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	22234	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA	nan	30.001	30.376	12.359	17.751	9.511	10.467	8.860	29.867	8.759	16.369	6.950	16.949	5.829	12.837	25.444	15.543	22.075	29.818	22.055	24.645	13.731	11.357	19.086	20.262	15.438	18.354	18.142	15.275	26.868	12.440	15.167	21.273	5.985	9.273	14.756	16.371	10.590	13.275	2.320	4.959	2.487	3.983	10.467	6.950	1.688	3.818	3.685	3.367
1979	chr12	58276417	58299842	+	0	NA	Intergenic	Intergenic	41818	NR_038269	100506844	Hs.90286	NR_038269		LOC100506844	-	uncharacterized LOC100506844	ncRNA	nan	2.247	1.200	1.774	2.377	1.136	0.743	1.927	0.318	3.623	1.644	4.644	2.453	0.426	0.099	nan	2.199	0.934	2.307	4.580	nan	3.595	1.548	0.660	0.700	1.436	nan	5.624	nan	2.111	1.860	0.787	1.504	1.663	1.441	0.557	1.143	6.354	2.855	0.928	4.053	0.265	0.393	0.743	4.644	0.708	1.257	0.911	0.327
6341	chr5	78518033	78539127	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-3345	NM_152405	133746	Hs.482605	NM_152405	ENSG00000152409	JMY	WHAMM2|WHDC1L3	junction mediating and regulatory protein, p53 cofactor	protein-coding	1.887	nan	3.062	1.036	0.932	0.395	0.454	0.217	0.161	0.452	0.187	0.516	1.168	0.573	0.120	0.680	0.789	1.193	1.690	1.367	1.390	nan	1.355	1.628	1.670	1.412	nan	1.432	1.875	4.002	4.337	1.262	1.497	0.665	1.249	3.042	5.324	0.687	0.555	0.558	1.288	0.171	1.116	0.454	0.516	0.183	0.587	0.276	1.728
5648	chr3	169489244	169492560	+	0	NA	promoter-TSS (NM_001185118)	promoter-TSS (NM_001185118)	49	NM_001185118	55892	Hs.507025	NM_018657	ENSG00000085274	MYNN	OSZF|SBBIZ1|ZBTB31|ZNF902	myoneurin	protein-coding	9.719	6.383	6.011	10.939	10.427	5.703	5.510	5.734	0.606	6.464	2.950	6.168	12.639	3.614	0.145	5.101	8.726	8.711	12.161	13.358	10.823	19.737	13.856	20.539	21.833	8.717	9.095	nan	16.781	nan	21.974	4.720	8.989	13.210	15.826	10.402	9.366	6.418	3.473	5.778	6.291	1.643	4.224	5.510	6.168	1.641	3.123	3.578	3.870
3066	chr16	15763139	15772029	+	0	NA	intron (NM_017668, intron 3 of 8)	AluJr|SINE|Alu	23501	NM_017668	54820	Hs.655378	NM_017668	ENSG00000072864	NDE1	HOM-TES-87|LIS4|MHAC|NDE|NUDE|NUDE1	nudE neurodevelopment protein 1	protein-coding	0.805	0.595	nan	3.558	5.374	2.861	0.475	1.285	0.250	0.829	0.411	3.353	3.347	0.134	0.080	0.306	0.455	0.310	0.356	0.925	1.045	4.930	0.630	0.687	0.568	0.314	0.645	10.248	13.134	nan	0.357	0.488	0.591	1.881	2.490	0.232	0.414	1.879	1.004	0.170	0.389	0.513	0.089	0.475	3.353	0.028	0.272	0.101	0.097
1948	chr12	52653030	52676825	+	0	NA	Intergenic	Intergenic	-3502	NM_001320198	3892	Hs.278658	NM_002284	ENSG00000170442	KRT86	HB6|Hb1|K86|KRTHB1|KRTHB6|MNX	keratin 86	protein-coding	nan	0.981	0.774	0.301	0.529	0.232	0.395	1.483	0.177	0.235	0.184	0.321	0.863	0.091	0.092	nan	1.048	6.247	6.212	0.660	nan	1.350	0.469	0.352	0.310	0.333	nan	1.405	nan	0.659	0.626	0.995	0.836	0.389	0.607	0.303	0.497	1.121	0.863	0.116	0.139	0.085	0.602	0.395	0.321	0.139	0.592	0.228	0.057
4402	chr2	73051696	73070190	+	0	NA	Intergenic	Intergenic	-7772	NM_001321733	23233	Hs.303454	NM_015189	ENSG00000144036	EXOC6B	SEC15B|SEC15L2	exocyst complex component 6B	protein-coding	nan	nan	1.129	0.285	0.963	0.535	0.691	0.264	0.060	0.143	0.129	0.778	1.248	0.376	0.098	0.461	0.478	0.563	1.237	0.856	0.862	4.136	2.458	0.586	0.606	0.463	0.660	0.562	0.821	0.649	0.540	0.292	0.416	0.400	0.577	0.238	0.454	nan	0.608	0.145	0.120	0.057	0.291	0.691	0.778	0.225	0.179	0.085	0.067
1609	chr11	105479014	105491261	+	0	NA	intron (NM_001077243, intron 3 of 16)	intron (NM_001077243, intron 3 of 16)	3726	NR_046356	2893	Hs.503743	NM_000829	ENSG00000152578	GRIA4	GLUR4|GLUR4C|GLURD|GluA4	glutamate ionotropic receptor AMPA type subunit 4	protein-coding	0.450	0.754	0.533	0.251	0.180	0.079	0.073	0.103	0.078	0.972	0.533	0.243	1.041	0.026	0.111	5.925	8.698	0.170	0.162	0.236	0.357	1.541	0.602	0.317	0.333	6.380	6.936	0.478	0.717	2.005	2.056	0.207	0.318	2.431	2.067	0.303	0.569	0.845	0.568	0.009	0.050	0.357	0.474	0.073	0.243	0.008	0.590	0.074	0.031
794	chr1	203473631	203495328	+	0	NA	Intergenic	Intergenic	21208	NM_014359	26254	Hs.632468	NM_014359	ENSG00000188770	OPTC	OPT	opticin	protein-coding	2.020	2.469	1.809	0.273	1.077	0.467	7.256	0.689	0.147	0.980	0.485	0.764	1.344	0.115	0.093	1.257	2.021	0.739	1.140	1.476	1.836	3.666	1.106	nan	nan	1.443	2.277	0.464	0.545	1.064	0.922	0.531	0.825	1.629	0.955	0.885	2.076	1.828	1.002	0.077	0.391	0.487	1.725	7.256	0.764	0.382	0.047	0.460	0.456
4983	chr20	47363536	47387920	+	0	NA	intron (NM_020820, intron 1 of 39)	MIR|SINE|MIR	68692	NM_020820	57580	Hs.153310	NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding	nan	nan	0.633	0.292	0.177	0.098	0.683	0.147	0.106	0.370	0.238	0.162	1.272	0.120	0.088	1.848	2.908	0.299	0.345	0.662	0.714	9.277	2.995	0.410	0.476	0.435	0.773	1.215	2.145	nan	3.126	0.967	0.957	0.566	0.550	0.391	0.777	1.396	0.889	0.259	1.221	0.113	0.252	0.683	0.162	1.172	0.112	0.767	0.132
1780	chr12	4713782	4722171	+	0	NA	intron (NM_003845, intron 10 of 12)	intron (NM_003845, intron 10 of 12)	3947	NM_001282285	8798	Hs.439530	NM_003845	ENSG00000010219	DYRK4	-	dual specificity tyrosine phosphorylation regulated kinase 4	protein-coding	1.307	nan	nan	0.737	0.344	0.324	0.379	0.080		0.224	0.306	0.160	0.574	0.409	0.065	0.442	0.623	0.725	0.844	nan	0.995	0.841	0.345	1.724	1.897	0.536	0.812	0.607	0.694	0.743	0.624	0.571	1.035	0.239	0.199	2.721	9.985	0.523	0.399	0.080	0.014	0.057	0.303	0.379	0.160	0.070	0.109	0.363	3.440
674	chr1	175115581	175118681	+	0	NA	TTS (NM_022093)	TTS (NM_022093)	44818	NM_001319231	9674	Hs.518138	NM_014656	ENSG00000235750	KIAA0040	-	KIAA0040	protein-coding	nan	nan	nan	0.010	0.383	0.051	0.388	0.200	0.105	0.099	0.160	0.038	0.807	0.069	0.041	2.654	1.091	13.743	3.588	nan	0.795	0.533	0.179	0.436	0.500	0.641	0.871	0.554	0.616	0.566	0.351	0.885	1.382	0.111	0.177	0.698	nan	0.985	0.916	0.036	0.056		0.155	0.388	0.038		0.182	0.182	0.303
5107	chr21	36056051	36066983	+	0	NA	intron (NM_053277, intron 1 of 5)	intron (NM_053277, intron 1 of 5)	20055	NM_053277	54102	Hs.473695	NM_053277	ENSG00000159212	CLIC6	CLIC1L	chloride intracellular channel 6	protein-coding	0.807	1.176	1.585	1.212	2.825	1.699	0.891	0.139	0.044	1.154	0.651	3.651	2.454	0.010	0.080	0.480	0.518	0.389	0.951	3.001	3.709	4.201	1.851	0.376	0.399	0.191	0.299	4.335	5.561	0.416	0.229	0.267	0.300	5.891	7.070	0.130	0.330	nan	1.550	6.034	6.764	1.599	0.247	0.891	3.651	0.071	1.049	0.090	0.057
1317	chr11	12762831	12811957	+	0	NA	intron (NM_021961, intron 3 of 12)	intron (NM_021961, intron 3 of 12)	91425	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding	1.059	nan	1.661	1.249	0.804	0.425	0.961	0.651	0.085	1.003	0.524	2.650	1.243	0.066	0.057	nan	1.235	0.831	1.200	2.740	2.778	2.047	0.724	0.873	0.918	1.390	nan	2.524	2.451	0.772	0.635	0.466	0.864	1.663	1.833	0.521	1.602	2.491	nan	1.885	1.967	0.366	0.439	0.961	2.650	0.130	0.260	0.377	0.316
5298	chr22	46390780	46416111	+	0	NA	non-coding (NR_027240, exon 1 of 1)	non-coding (NR_027240, exon 1 of 1)	949	NR_027240	730668	Hs.640071	NR_027240	ENSG00000280424	LOC730668	-	dynein heavy chain -like pseudogene	pseudo	3.132	3.351	nan	5.311	1.012	0.642	0.906	1.705	0.451	3.251	1.290	3.781	5.611	0.793	0.148	2.198	3.276	1.190	1.684	4.011	3.833	5.557	1.574	1.879	2.133	2.918	3.572	2.089	3.644	2.265	2.556	0.863	1.186	5.769	6.797	0.371	0.398	4.193	1.851	3.071	0.616	2.777	0.654	0.906	3.781	0.913	7.323	0.406	0.054
2430	chr13	107857497	107895941	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	306877	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA	0.730	2.090	0.689	1.236	6.041	3.188	0.899	0.082	0.071	1.132	0.594	3.137	2.763	0.020	0.073	0.691	0.564	1.040	0.563	1.732	1.893	0.279	0.120	0.081	0.073	0.203	nan	2.317	2.867	0.376	0.167	0.111	0.170	2.145	1.963	0.174	nan	0.794	0.437	0.369	4.363	0.205	0.135	0.899	3.137	0.010	2.265	0.034	0.289
2943	chr15	71716864	71742409	+	0	NA	intron (NM_024817, intron 6 of 16)	MSTB|LTR|ERVL-MaLR	-109905	NM_001286429	79875	Hs.387057	NM_024817	ENSG00000187720	THSD4	ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005	thrombospondin type 1 domain containing 4	protein-coding	0.586	0.729	0.786	0.083	0.279	0.162	0.260	0.294	0.166	0.162	0.152	0.181	0.521	0.064	0.080	0.318	0.240	2.082	4.587	0.272	0.375	1.210	0.574	0.168	0.156	0.194	0.301	0.237	0.301	0.636	0.314	0.280	0.394	0.073	0.079	0.234	0.428	0.398	0.374	0.013	0.116	0.011	0.087	0.260	0.181	0.076	0.016	0.068	0.084
2596	chr14	55516197	55521753	+	0	NA	intron (NM_144578, intron 1 of 3)	intron (NM_144578, intron 1 of 3)	613	NM_144578	93487	Hs.594338	NM_144578	ENSG00000168175	MAPK1IP1L	C14orf32|MISS|c14_5346	mitogen-activated protein kinase 1 interacting protein 1 like	protein-coding	nan	nan	4.912	5.792	4.919	2.595	3.651	2.834	0.290	1.328	0.788	4.590	9.681	3.663	0.223	5.119	4.201	6.950	8.645	9.621	7.711	8.521	4.630	15.253	16.825	3.435	4.160	7.022	10.727	8.842	9.818	3.308	5.619	9.038	10.221	5.013	4.331	nan	1.309	6.214	3.729	1.699	3.090	3.651	4.590	1.298	3.107	1.440	1.441
1503	chr11	70839591	70864573	+	0	NA	intron (NM_012309, intron 2 of 22)	intron (NM_012309, intron 2 of 22)	83760	NM_012309	22941	Hs.268726	NM_012309	ENSG00000162105	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding	nan	0.625	0.467	0.070	1.473	0.816	0.174	0.042	0.051	0.047	0.056	0.316	2.086	0.057	0.092	0.531	0.582	0.227	0.327	1.062	1.104	0.210	0.072	0.309	0.422	0.187	0.289	0.419	0.570	0.334	0.295	0.398	0.478	0.073	0.093	0.284	0.507	0.560	0.443	4.411	0.125	0.019	0.032	0.174	0.316	0.109	0.146	0.133	0.094
6366	chr5	92953228	92959710	+	0	NA	promoter-TSS (NR_031754)	promoter-TSS (NR_031754)	25	NR_031754	100313887		NR_031754	ENSG00000113391	MIR2277	mir-2277	microRNA 2277	ncRNA	nan	7.666	2.053	1.086	2.821	1.228	4.015	1.128	0.173	1.107	0.585		4.120	7.344	0.188	0.778	1.225	1.541	2.047	2.773	1.746	3.534	2.172	0.150	0.247	2.404	2.823	2.107	5.159	2.157	2.712	0.320	0.439	7.581	7.321	1.518	nan	1.867	1.312	1.686	2.219	1.939	0.565	4.015		0.240	2.035	0.260	0.553
7792	chr8	94452916	94465062	+	0	NA	intron (NR_033858, intron 7 of 10)	intron (NR_033858, intron 7 of 10)	253672	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	ncRNA	nan	2.907	3.219	1.004	1.109	0.488	0.556	1.573	0.225	0.103	0.110	0.687	7.518	0.089	0.121	0.241	0.093	0.336	nan	1.669	1.920	0.130	0.094	0.243	0.280	0.894	1.429	3.989	3.840	1.172	0.945	0.124	0.256	1.763	1.598	0.414	0.925	1.890	0.817	4.589	0.296	0.668	0.301	0.556	0.687	0.361	0.444	0.024	0.226
2512	chr14	29585464	29599514	+	0	NA	Intergenic	Intergenic	-337496	NR_135255	105370424	Hs.375809	NR_135255	ENSG00000257056	LOC105370424	-	uncharacterized LOC105370424	ncRNA	1.217	0.975	0.768	0.211	0.271	0.159	0.219	0.223	0.103	0.066	0.125	0.221	0.289	0.054	0.110	0.158	0.118	0.133	0.209	0.349	0.518	0.415	0.170	0.151	0.185	4.739	5.392	0.319	0.376	0.731	0.319	0.051	0.131	0.195	0.280	0.447	1.389	0.535	0.392	0.043	0.099	0.068	0.155	0.219	0.221	0.076	0.041	0.014	0.347
7637	chr8	32067763	32199727	+	0	NA	intron (NM_013962, intron 1 of 4)	L1MA5|LINE|L1	-164517	NR_047475	100874286	Hs.147060	NR_047475	ENSG00000254049	NRG1-IT3	-	NRG1 intronic transcript 3	ncRNA	0.496	0.804	nan	0.070	0.182	0.096	0.176	0.138	0.104	0.098	0.102	0.047	0.736	5.897	0.229	0.301	0.150	0.272	0.365	0.428	0.496	0.148	0.078	0.215	0.209	0.140	0.235	0.205	0.216	0.401	0.234	0.087	0.127	0.103	0.142	0.206	0.324	0.730	0.731	0.050	0.071	0.032	0.020	0.176	0.047	0.038	0.068	0.027	0.080
1286	chr11	4113407	4117947	+	0	NA	promoter-TSS (NM_001033)	promoter-TSS (NM_001033)	-238	NM_001318064	6240	Hs.445705	NM_001033	ENSG00000167325	RRM1	R1|RIR1|RR1	ribonucleotide reductase catalytic subunit M1	protein-coding	4.618	6.483	3.817	3.120	5.008	2.546	3.467	2.436	0.214	3.180	1.154	8.504	10.464	1.834	0.098	9.469	7.582	7.189	10.299	13.326	13.130	10.106	8.442	13.250	13.943	5.398	6.945	5.912	9.390	6.983	6.972	5.846	8.569	8.118	10.145	4.370	3.731	3.509	1.999	6.152	4.503	1.737	1.874	3.467	8.504	0.966	2.194	2.128	1.451
6993	chr6	137206740	137220121	+	0	NA	intron (NM_000288, intron 8 of 9)	intron (NM_000288, intron 8 of 9)	-29949	NM_001008783	340146	Hs.369703	NM_001008783	ENSG00000182747	SLC35D3	FRCL1	solute carrier family 35 member D3	protein-coding	0.973	0.966	2.448	0.318	0.417	0.276	0.112	0.134	0.061	0.257	0.218	0.163	0.355	0.032	0.118	0.446	0.345	0.261	0.378	0.376	0.299	nan	1.892	0.245	0.262	0.395	0.528	0.406	0.530	0.614	0.268	0.194	0.283	0.714	0.795	0.249	nan	0.562	0.406	0.041	0.134	0.100	0.071	0.112	0.163	0.044	0.864	0.067	0.140
4744	chr2	227697978	227705490	+	0	NA	intron (NM_032276, intron 1 of 6)	MER5A|DNA|hAT-Charlie	1063	NM_001167608	84236	Hs.471514	NM_032276	ENSG00000144468	RHBDD1	RRP4	rhomboid domain containing 1	protein-coding	4.816	1.523	3.376	3.147	2.318	1.108	0.744	1.316	0.064	1.754	0.976	1.482	nan	3.726	0.184	3.906	4.801	2.043	3.094	2.233	1.828	3.531	1.451	8.272	8.297	5.132	6.118	6.976	nan	2.725	2.544	1.069	1.944	2.457	1.809	7.464	9.462	0.972	0.793	1.349	0.412	0.356	3.062	0.744	1.482	0.156	2.092	0.854	3.516
6680	chr6	26247210	26257860	+	0	NA	TTS (NM_003524)	TTS (NM_003524)	656	NM_003524	8345	Hs.247815	NM_003524	ENSG00000275713	HIST1H2BH	H2B/j|H2BFJ	histone cluster 1 H2B family member h	protein-coding	3.589	1.149	nan	5.135	3.665	2.154	1.595	1.102	0.203	0.649	0.430	3.600	nan	5.788	0.202	7.411	9.488	0.511	nan	8.918	5.517	10.351	3.875	11.756	11.850	0.252	0.372	3.892	5.311	1.278	0.818	1.228	2.921	5.852	6.531	0.240	0.370	2.551	1.538	1.789	4.155	0.954	1.459	1.595	3.600	0.906	1.156	1.593	0.127
5339	chr3	20720423	20744442	+	0	NA	Intergenic	Intergenic	348472	NR_110814	101927829	Hs.639381	NR_110814	ENSG00000231304	LOC101927829	-	uncharacterized LOC101927829	ncRNA	0.616	0.638	0.548	0.079	0.213	0.054	0.187	0.240	0.086	0.085	0.099	0.020	0.154	0.032	0.092	0.223	0.161	5.427	7.165	0.127	0.190	0.166	0.071	0.138	0.144	0.674	0.820	0.231	0.262	nan	0.152	0.129	0.215	0.142	0.125	0.134	0.270	0.332	0.267	0.007	0.045	0.043	0.033	0.187	0.020	0.025	0.038	0.058	0.037
2638	chr14	61590609	61616175	+	0	NA	Intergenic	HERVH-int|LTR|ERV1	145138	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding	nan	nan	2.164	0.530	0.430	0.194	1.434	2.003	0.107	0.096	0.115	0.286	2.544	0.042	0.131	0.344	0.330	0.270	0.426	0.793	0.938	0.823	0.225	nan	0.525	0.190	0.423	2.446	nan	0.890	0.719	0.180	0.219	0.830	1.188	0.320	0.718	1.300	0.833	3.167	1.232	0.241	0.316	1.434	0.286	0.167	0.214	0.055	0.146
355	chr1	67389193	67400892	+	0	NA	promoter-TSS (NM_001077701)	promoter-TSS (NM_001077701)	-884	NM_001077701	57708	Hs.605432	NM_020948	ENSG00000198160	MIER1	ER1|MI-ER1	MIER1 transcriptional regulator	protein-coding	4.525	2.076	nan	2.693	2.618	1.248	1.525	2.478	0.303	2.576	1.238	3.030	6.530	3.500	0.176	2.361	3.858	2.739	4.305	5.110	5.149	4.016	1.673	7.518	7.253	nan	5.695	5.391	7.772	4.716	4.229	2.168	4.459	4.376	3.397	4.589	5.885	2.584	1.178	2.583	5.327	0.706	1.521	1.525	3.030	0.615	1.555	1.462	1.183
553	chr1	153933991	153941791	+	0	NA	intron (NM_001271960, intron 1 of 4)	AluSg|SINE|Alu	-1774	NM_001271958	27173	Hs.7854	NM_014437	ENSG00000143570	SLC39A1	ZIP1|ZIRTL	solute carrier family 39 member 1	protein-coding	7.173	4.718	7.865	4.489	3.974	2.062	5.106	2.949	0.523	3.491	1.736	4.316	17.815	6.827	0.184	6.939	6.672	8.175	12.981	10.410	nan	6.112	2.379	7.618	8.092	5.538	6.716	7.220	11.920	5.477	4.790	7.337	12.040	5.701	6.978	6.271	8.655	3.897	1.682	4.209	7.639	1.635	3.232	5.106	4.316	1.305	5.206	6.039	2.589
3546	chr17	72798185	72839414	+	0	NA	intron (NM_001321264, intron 9 of 9)	intron (NM_001321264, intron 9 of 9)	37208	NR_103735	2905	Hs.436980	NM_000835	ENSG00000161509	GRIN2C	GluN2C|NMDAR2C|NR2C	glutamate ionotropic receptor NMDA type subunit 2C	protein-coding	0.996	0.742	1.155	0.483	0.388	0.252	0.263	0.197	0.058	0.231	0.188	0.181	1.116	0.076	0.106	0.721	1.267	0.289	0.332	0.917	0.853	0.596	0.250	0.212	0.216	nan	4.943	1.093	1.221	1.267	1.224	0.485	0.696	0.415	0.360	0.507	0.738	nan	0.498	1.567	0.699	0.145	0.148	0.263	0.181	0.306	0.675	0.237	0.227
1252	chr10	126824264	126851787	+	0	NA	intron (NM_001290214, intron 1 of 10)	AmnSINE1|SINE|Deu	9662	NM_001290215	1488	Hs.501345	NM_001329	ENSG00000175029	CTBP2	-	C-terminal binding protein 2	protein-coding	nan	2.435	1.715	2.096	1.628	0.816	0.641	0.137	0.053	0.889	0.342	1.727	7.319	0.915	0.078	1.996	2.587	1.579	3.186	1.222	1.061	1.963	0.651	1.939	1.902	0.755	1.243	4.643	6.209	1.040	1.052	1.247	2.926	1.127	1.384	1.760	1.707	1.696	0.882	1.795	2.065	0.284	0.743	0.641	1.727	0.320	1.603	1.698	0.683
7649	chr8	37886899	37892639	+	0	NA	intron (NM_004095, intron 1 of 2)	AluJr|SINE|Alu	1749	NM_004095	1978	Hs.411641	NM_004095	ENSG00000187840	EIF4EBP1	4E-BP1|4EBP1|BP-1|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	4.445	2.077	nan	14.719	3.089	1.652	3.868	3.283	0.140	3.952	1.907	3.766	6.199	5.101	0.183	8.369	7.330	3.377	5.647	7.413	6.906	8.204	2.853	15.625	16.243	3.747	5.078	6.430	8.515	7.477	9.066	3.687	5.723	6.568	6.375	6.296	7.906	5.260	3.011	2.239	5.681	1.128	1.121	3.868	3.766	0.897	2.211	2.739	3.376
2877	chr15	51625823	51643012	+	0	NA	intron (NM_181789, intron 1 of 9)	MIR3|SINE|MIR	704	NM_181789	342035	Hs.526441	NM_181789	ENSG00000186417	GLDN	CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112	gliomedin	protein-coding	0.932	1.205	1.407	0.266	5.162	2.655	0.259	0.280	0.066	0.503	0.267	0.773	0.541	0.050	0.067	0.327	0.262	0.248	0.352	0.291	0.359	1.561	0.624	0.150	0.154	0.439	0.638	0.493	0.430	0.519	0.371	0.643	0.907	1.903	1.931	0.355	0.713	0.713	0.710	0.064	0.072	0.344	0.105	0.259	0.773	0.040	0.229	0.322	0.219
2643	chr14	62833460	62842390	+	0	NA	Intergenic	L2b|LINE|L2	-231234	NR_104063	101954204	Hs.607093	NR_104063	ENSG00000259142	LINC00644	-	long intergenic non-protein coding RNA 644	ncRNA	3.273	nan	2.919	0.138	0.213	0.135	0.157	0.075	0.216	0.125	0.125	0.129	0.248	0.048	0.101	0.243	0.204	0.139	0.271	0.332	0.465	0.429	0.137	nan	0.295	0.229	0.364	0.253	nan	0.857	0.626	0.107	0.150	0.178	0.194	4.419	10.653	0.443	0.563	0.044	0.130	0.032	0.292	0.157	0.129	0.316	0.068	0.033	6.198
555	chr1	154153369	154157010	+	0	NA	intron (NM_152263, intron 2 of 9)	intron (NM_152263, intron 2 of 9)	536	NM_153649	7170	Hs.535581	NM_152263	ENSG00000143549	TPM3	CAPM1|CFTD|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPMsk3|TRK|hscp30	tropomyosin 3	protein-coding	nan	5.306	4.432	4.599	4.062	2.554	4.494	3.025	0.453	3.011	1.721	4.022	20.716	5.144	0.180	3.867	4.833	7.279	9.596	9.205	7.164	7.461	3.158	6.039	6.736	5.273	5.626	7.067	9.615	3.957	3.745	5.154	9.108	3.993	4.694	3.172	7.046	3.368	1.162	3.875	6.827	0.795	2.926	4.494	4.022	1.372	5.100	2.359	1.923
1037	chr10	14225407	14238484	+	0	NA	intron (NR_134578, intron 2 of 3)	intron (NR_134578, intron 2 of 3)	115662	NR_120638	101928453	Hs.650212	NR_120638		LOC101928453	-	uncharacterized LOC101928453	ncRNA	nan	0.819	0.602	1.080	0.334	0.135	0.079	0.459	0.307	0.060	0.125	0.257	0.235	0.042	0.087	2.343	3.054	2.366	2.518	0.305	0.324	5.281	3.267	1.305	1.351	0.650	1.040	0.654	0.893	0.202	0.165	0.547	0.572	0.418	0.427	0.392	0.472	0.584	0.587	0.009	0.034	0.059	0.073	0.079	0.257	0.074	0.007	0.145	0.104
6508	chr5	148922766	148932426	+	0	NA	intron (NM_001025105, intron 2 of 10)	AluSz|SINE|Alu	2298	NM_001271742	1452	Hs.529862	NM_001892	ENSG00000113712	CSNK1A1	CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975	casein kinase 1 alpha 1	protein-coding	nan	3.366	2.789	3.260	4.341	2.211	1.705	2.030	0.261	1.676	0.749	4.370	9.152	4.248	0.133	3.366	2.806	7.259	9.375	5.254	5.219	4.799	2.640	6.877	7.633	3.295	4.256	6.221	10.392	6.818	5.677	3.840	6.708	3.364	5.229	3.093	4.513	2.051	0.880	2.003	3.383	0.957	1.733	1.705	4.370	0.666	1.637	2.141	1.314
5814	chr3	197451215	197464965	+	0	NA	intron (NM_001145642, intron 1 of 20)	SVA_D|Other|Other	5707	NM_001346873	9711	Hs.478868	NM_014687	ENSG00000145016	RUBCN	KIAA0226|RUBICON|SCAR15	RUN and cysteine rich domain containing beclin 1 interacting protein	protein-coding	nan	1.995	1.438	0.974	0.913	0.440	0.988	0.937	0.223	0.477	0.297	0.808	nan	0.465	0.098	0.767	0.873	0.831	1.333	1.432	1.431	2.178	0.721	1.547	1.504	2.746	3.474	2.116	2.877	8.534	8.568	0.837	1.481	0.572	0.600	1.488	2.631	0.972	0.600	0.663	0.718	0.111	0.599	0.988	0.808	2.073	0.288	0.419	1.039
6879	chr6	100998211	101015175	+	0	NA	intron (NM_006828, intron 36 of 41)	intron (NM_006828, intron 36 of 41)	-95142	NM_005068	6492	Hs.520293	NM_005068	ENSG00000112246	SIM1	bHLHe14	single-minded family bHLH transcription factor 1	protein-coding	1.091	nan	nan	0.541	0.615	0.521	0.318	0.158	0.142	0.609	0.602	0.297	0.495	0.069	0.109	0.457	0.322	0.186	0.256	0.440	nan	0.844	0.431	0.516	0.422	0.711	0.925	0.362	0.378	nan	0.104	0.187	0.197	4.118	4.744	0.900	2.889	0.696	0.315	0.016	0.094	1.949	0.078	0.318	0.297	0.023	0.309	0.081	0.715
4164	chr1_gl000192_random	543386	546188	+	0	NA	Intergenic	Intergenic	-76104	NR_120328	102724558	Hs.712738	NR_120328		CH17-408M7.1	-	uncharacterized LOC102724558	ncRNA	nan	3.394	2.122	2.674	0.254	0.285	2.845	1.959	0.344	1.023	0.556	2.767	10.499	4.660	0.279	11.324	12.743	2.019	2.396	nan	1.000	0.428	0.197	3.965	3.392	1.434	2.212	3.386	4.725	2.345	2.042	12.418	nan	0.102	0.249	2.148	2.182	0.903	0.572	1.564	2.079	0.067	0.792	2.845	2.767	0.221	7.479	4.111	0.405
7926	chr8	128037636	128642985	+	0	NA	intron (NR_117099, intron 2 of 3)	intron (NR_117099, intron 2 of 3)	-72334	NR_109834	101805488	Hs.745578	NR_109834	ENSG00000280997	CCAT2	LINC00873|NCCP1	colon cancer associated transcript 2 (non-protein coding)	ncRNA	nan	nan	nan	0.267	0.909	0.470	0.080	0.205	0.101	0.064	0.074	0.092	nan	0.502	0.100	0.645	0.554	0.654	0.939	0.461	0.548	0.736	0.271	nan	nan	9.157	13.181	1.053	1.028	18.215	10.825	0.196	0.295	0.183	0.184	10.461	19.811	0.513	0.465	0.068	0.178	0.072	0.067	0.080	0.092	0.566	0.090	0.094	10.257
195	chr1	33615961	33621311	+	0	NA	intron (NM_001330483, intron 4 of 4)	intron (NM_001330483, intron 4 of 4)	23515	NM_001330483	55223	Hs.656006	NM_018207	ENSG00000116525	TRIM62	DEAR1	tripartite motif containing 62	protein-coding	3.953	nan	8.487	1.839	2.988	1.255	0.622	0.169	0.209	0.319	0.294	5.288	1.190	0.239	0.104	2.206	3.407	0.286	0.438	5.244	4.213	nan	0.082	0.564	0.569	1.325	2.083	1.588	1.776	nan	7.350	0.811	1.306	0.692	0.844	3.741	9.749	1.617	nan	0.516	0.503	0.161	6.050	0.622	5.288	0.743	0.121	0.429	4.309
5321	chr3	7244830	7250017	+	0	NA	intron (NM_000844, intron 2 of 9)	MARNA|DNA|TcMar-Mariner	-311719	NR_131906	105376946	Hs.616038	NR_131906	ENSG00000237665	GRM7-AS2	-	GRM7 antisense RNA 2	ncRNA	0.458	0.776	0.583	0.050	0.581	0.233	0.049	0.422	0.031	0.121	0.015	0.078	0.262	0.064	0.051	2.406	2.208	13.563	6.653	0.352	0.418	0.372	0.085	1.386	1.600	0.139	0.215	0.305	0.195	0.318	0.094	3.751	4.283	0.365	0.581	0.120	0.391	0.427	0.421	0.044	0.035	0.055	0.015	0.049	0.078		0.079	3.859	0.023
5800	chr3	195380766	195393835	+	0	NA	intron (NR_003265, intron 1 of 14)	intron (NR_003265, intron 1 of 14)	2390	NR_003265	727956	Hs.596261	NR_003265	ENSG00000242086	SDHAP2	SDHAL2|SDHALP2	succinate dehydrogenase complex flavoprotein subunit A pseudogene 2	pseudo	nan	2.963	2.903	1.663	2.807	1.302	1.129	0.971	0.223	1.150	0.838	0.786	nan	0.944	0.093	1.374	1.861	1.983	2.716	2.710	2.672	2.315	1.171	4.932	4.790	2.291	2.952	2.953	4.192	2.193	2.214	7.280	11.225	1.023	0.969	2.540	3.132	1.674	1.024	1.248	1.880	0.387	0.876	1.129	0.786	0.521	0.434	7.085	1.287
679	chr1	178228385	178244286	+	0	NA	intron (NM_170692, intron 1 of 17)	HAL1|LINE|L1	-74271	NM_004841	9462	Hs.496139	NM_004841	ENSG00000075391	RASAL2	NGAP	RAS protein activator like 2	protein-coding	nan	nan	nan	0.165	0.331	0.141	0.163	0.546	0.222	0.292	0.175	0.075	0.342	0.163	0.124	0.574	0.317	3.394	7.275	nan	0.444	0.749	0.694	0.287	0.298	0.613	1.014	0.328	0.326	0.390	0.142	0.354	0.610	0.157	0.272	0.436	nan	0.478	0.541	0.014	0.180	0.030	0.100	0.163	0.075	0.019	0.045	0.106	0.077
6195	chr5	16845039	16869000	+	0	NA	intron (NM_012334, intron 2 of 40)	intron (NM_012334, intron 2 of 40)	79366	NM_012334	4651	Hs.481720	NM_012334	ENSG00000145555	MYO10	-	myosin X	protein-coding	nan	nan	nan	0.422	0.199	0.134	0.205	1.005	0.308	0.334	0.281	0.167	nan	0.087	0.103	0.502	0.374	0.689	0.785	0.560	0.573	2.361	0.572	0.164	0.173	nan	2.893	2.601	2.202	1.368	0.812	0.999	1.877	0.216	0.166	0.824	nan	0.497	0.654	0.458	0.507	0.028	0.647	0.205	0.167	0.036	0.118	0.923	0.342
7943	chr8	135279892	135302299	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-319219	NR_002438	594840	Hs.626298	NR_002438	ENSG00000248492	ZFAT-AS1	NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS	ZFAT antisense RNA 1	ncRNA	nan	0.725	1.376	1.051	2.201	1.367	0.232	0.087	0.045	0.332	0.195	0.368	1.362	0.020	0.078	0.286	0.177	0.224	0.268	0.576	0.725	10.430	2.196	nan	0.541	0.117	0.224	0.339	0.779	0.337	0.188	0.148	0.246	1.048	0.704	0.141	0.218	2.406	1.192	0.127	0.131	0.264	0.333	0.232	0.368	0.031	0.172	0.035	0.022
2355	chr13	79797575	79803710	+	0	NA	Intergenic	Intergenic	179714	NM_001286632	64062	Hs.558528	NM_018605	ENSG00000139746	RBM26	ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17	RNA binding motif protein 26	protein-coding	nan	nan	0.656	0.658	0.629	0.364	3.978	0.113	0.026	0.336	0.190	1.201	1.183	0.035	0.080	0.653	0.326	0.266	0.375	0.824	0.649	12.937	4.483	0.096	0.179	0.258	0.304	0.596	0.375	0.277	0.157	0.218	0.302	0.922	0.813	0.335	0.549	0.437	0.240	0.072	0.569	0.063	0.232	3.978	1.201	0.048	0.083	0.130	0.081
1241	chr10	124604573	124612059	+	0	NA	TTS (NR_037911)	TTS (NR_037911)	-2625	NM_022034	50624	Hs.647182	NM_022034	ENSG00000138161	CUZD1	ERG-1|ERG1|ITMAP1|UO-44	CUB and zona pellucida like domains 1	protein-coding	nan	0.579	0.811	0.636	0.313	0.236	0.050	0.403	0.086	0.167	0.055	0.192	0.238	0.056	0.088	0.362	0.244	0.189	0.222	0.839	0.765	1.288	0.161	0.297	0.185	0.279	0.437	9.529	7.161	2.008	1.677	0.203	0.174	0.038	0.014	0.346	1.350	0.634	0.403	1.742	0.306	0.013	0.189	0.050	0.192	0.053	4.788	0.013	0.627
5495	chr3	117149345	117170756	+	0	NA	Intergenic	Intergenic	519772	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA	0.831	nan	0.805	0.318	0.606	0.336	0.266	0.097	0.105	0.256	0.193	0.196	0.285	3.643	0.093	0.499	0.366	0.300	0.273	0.368	nan	2.386	0.582	0.291	0.324	nan	0.743	1.204	0.793	0.894	0.419	0.122	0.171	0.115	0.106	0.570	1.422	1.385	0.856	0.294	0.268	0.017	0.090	0.266	0.196	0.022	0.712	0.032	0.264
1441	chr11	61520061	61525925	+	0	NA	intron (NM_013279, intron 1 of 25)	intron (NM_013279, intron 1 of 25)	132	NM_013279	745	Hs.473109	NM_013279	ENSG00000124920	MYRF	C11orf9|MRF|Ndt80|pqn-47	myelin regulatory factor	protein-coding	nan	0.786	0.718	0.161	10.167	5.123	0.341	0.289	0.054	0.068	0.117	0.249	0.664	0.566	0.142	0.840	1.126	1.070	1.967	1.291	1.195	1.144	0.394	0.819	0.872	0.699	0.925	0.582	1.004	0.542	0.317	3.560	6.863	0.469	0.825	0.369	0.742	0.441	0.302	0.076	0.151	0.049	0.041	0.341	0.249	0.106	0.140	5.879	0.042
647	chr1	167186973	167206915	+	0	NA	intron (NM_002697, intron 1 of 15)	intron (NM_002697, intron 1 of 15)	6821	NR_037163	5451	Hs.283402	NM_002697	ENSG00000143190	POU2F1	OCT1|OTF1|oct-1B	POU class 2 homeobox 1	protein-coding	3.182	nan	3.849	1.494	1.778	0.988	1.919	1.126	0.275	1.748	0.835	1.724	3.431	1.177	0.120	3.326	3.427	3.019	4.143	4.274	nan	2.962	1.668	3.106	3.287	2.228	2.924	2.751	nan	3.104	2.965	2.313	4.546	2.561	3.157	5.605	9.011	1.189	0.886	1.254	3.550	0.719	1.111	1.919	1.724	0.606	0.908	2.234	3.393
4368	chr2	56235049	56251740	+	0	NA	intron (NR_126406, intron 1 of 2)	MIR3|SINE|MIR	-15464	NR_030623	100126319		NR_030623	ENSG00000211520	MIR216B	MIRN216B|mir-216b	microRNA 216b	ncRNA	2.212	nan	2.832	0.197	2.429	1.278	3.320	0.184	0.077	4.060	2.794	0.831	7.801	0.071	0.125	0.676	0.787	0.187	0.389	2.540	2.724	5.244	2.383	0.291	0.320	4.900	5.215	1.052	1.466	6.748	6.569	0.537	0.620	5.339	6.120	2.196	3.761	1.429	0.703	0.037	2.852	1.528	1.367	3.320	0.831	1.257	0.310	0.345	1.089
5328	chr3	14987498	14992430	+	0	NA	promoter-TSS (NR_046255)	promoter-TSS (NR_046255)	-16	NR_046251	100505641	Hs.517821	NR_046251	ENSG00000225733	FGD5-AS1	-	FGD5 antisense RNA 1	ncRNA	nan	4.312	4.412	4.388	3.848	2.045	3.186	3.370	0.588	1.812	1.065	4.296	9.696	4.062	0.120	5.780	4.374	8.002	10.311	8.728	8.495	6.143	3.842	15.125	15.749	2.963	3.380	9.381	14.631	8.697	8.232	6.670	7.610	4.366	5.455	5.176	4.322	2.763	1.195	4.470	3.898	1.388	3.172	3.186	4.296	0.850	3.333	2.292	2.035
3473	chr17	55920132	56038969	+	0	NA	intron (NM_001271875, intron 1 of 10)	AluSq2|SINE|Alu	1200	NM_001292025	404093	Hs.46679	NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding	2.059	3.097	3.114	1.944	4.119	2.180	1.044	1.363	0.385	1.428	0.772	3.191	5.216	0.335	0.116	1.562	2.675	0.922	1.825	2.649	2.806	3.089	1.208	nan	1.553	1.771	2.361	nan	nan	2.648	2.285	1.120	2.001	3.117	3.190	2.175	6.073	2.143	1.129	1.170	2.446	1.597	1.484	1.044	3.191	0.628	0.993	1.431	2.125
7884	chr8	114225512	114248073	+	0	NA	intron (NM_052900, intron 3 of 68)	intron (NM_052900, intron 3 of 68)	152590	NM_198124	114788	Hs.91381	NM_052900	ENSG00000164796	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding	nan	nan	1.120	0.106	0.287	0.100	0.090	0.104	0.058	0.340	0.240	0.037	0.456	0.039	0.095	0.320	0.232	0.051	0.073	0.296	0.425	nan	0.276	0.585	nan	1.023	nan	0.373	0.526	0.433	0.161	0.109	0.238	3.399	4.321	0.222	0.464	0.363	0.362	0.015	0.040	0.760	0.077	0.090	0.037		0.398	0.031	0.066
5868	chr4	40056080	40061061	+	0	NA	promoter-TSS (NM_018177)	promoter-TSS (NM_018177)	46	NM_001318359	55728	Hs.391463	NM_018177	ENSG00000078177	N4BP2	B3BP	NEDD4 binding protein 2	protein-coding	6.994	nan	nan	9.177	8.079	4.185	8.114	4.054	0.358	6.222	3.159	8.612	11.690	6.133	0.144	8.763	10.736	11.185	15.407	11.079	9.673	12.883	6.246	7.566	7.217	5.689	7.283	9.635	16.926	11.789	12.697	3.202	5.750	8.366	6.342	7.613	6.642	10.086	5.266	5.115	6.308	1.411	5.599	8.114	8.612	1.114	2.602	1.758	1.729
174	chr1	29771400	29802442	+	0	NA	Intergenic	Intergenic	-110295	NR_110758	101928460	Hs.434659	NR_110758	ENSG00000230523	LINC01756	-	long intergenic non-protein coding RNA 1756	ncRNA	1.199	0.853	nan	0.333	0.656	0.382	0.204	0.038	0.042	0.199	0.144	0.512	0.971	0.060	0.104	0.272	0.203	0.107	0.119	0.873	0.956	0.654	0.209	0.125	0.125	0.278	0.464	1.049	1.174	1.241	1.031	0.318	0.336	0.401	0.330	1.201	3.339	2.047	0.940	0.276	0.467	0.074	0.051	0.204	0.512	0.556	1.209	0.089	1.361
6793	chr6	46344644	46353743	+	0	NA	intron (NM_001251973, intron 2 of 4)	intron (NM_001251973, intron 2 of 4)	-55564	NM_005822	10231	Hs.440168	NM_005822	ENSG00000172348	RCAN2	CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4	regulator of calcineurin 2	protein-coding	0.907	3.118	0.611	0.910	1.321	0.740	0.726	0.217	0.049	0.277	0.198	0.183	1.664	0.024	0.114	1.400	1.289	6.098	8.949	0.719	0.535	0.113	0.085	0.477	0.528	0.167	0.259	4.086	nan	0.291	0.140	0.324	0.621	3.047	3.897	0.186	0.225	1.419	1.080	0.189	0.155	1.039	0.123	0.726	0.183	0.010	0.100	0.140	0.069
1571	chr11	92180438	92245236	+	0	NA	intron (NM_001008781, intron 1 of 24)	LTR53|LTR|ERVL	127575	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10|hFat3	FAT atypical cadherin 3	protein-coding	0.600	nan	0.561	0.220	0.167	0.104	0.162	0.090	0.055	0.070	0.106	0.105	0.446	0.075	0.115	5.469	4.568	4.675	nan	0.546	0.644	0.134	0.069	6.214	6.290	0.817	1.070	0.770	0.642	0.434	0.193	3.353	4.927	0.684	0.793	0.260	nan	0.679	0.623	0.095	0.106	0.111	0.118	0.162	0.105	0.017	0.058	3.730	0.092
7421	chr7	105649199	105677574	+	0	NA	intron (NM_152750, intron 14 of 18)	intron (NM_152750, intron 14 of 18)	59729	NM_001301161	222256	Hs.150120	NM_152750	ENSG00000128536	CDHR3	CDH28	cadherin related family member 3	protein-coding	nan	0.699	1.209	0.090	0.364	0.224	0.860	1.247	0.119	0.299	0.224	0.303	0.641	0.065	0.163	0.576	0.645	0.307	0.358	0.492	0.549	0.683	0.198	0.164	0.149	3.632	4.356	0.262	0.313	0.506	0.395	0.370	0.679	0.420	0.550	0.533	nan	0.603	0.589	1.251	0.321	0.071	0.120	0.860	0.303	0.464	0.032	0.250	0.192
7554	chr7	155002295	155020360	+	0	NA	Intergenic	L1ME4a|LINE|L1	-78155	NM_001346590	3638	Hs.520819	NM_005542	ENSG00000186480	INSIG1	CL6	insulin induced gene 1	protein-coding	0.744	1.357	nan	0.074	0.366	0.150	0.504	0.300	0.080	0.193	0.170	0.619	2.766	0.066	0.142	0.455	0.572	0.300	0.502	0.782	0.746	0.398	0.092	0.132	0.207	0.149	0.209	0.173	0.149	0.500	0.395	0.683	1.090	4.659	4.032	0.295	0.641	2.694	1.247	2.040	1.831	1.354	0.070	0.504	0.619	0.709	0.039	0.803	0.123
3681	chr18	19897473	19904799	+	0	NA	Intergenic	Intergenic	96742	NM_172241	64693	Hs.406709	NM_022663	ENSG00000212710	CTAGE1	CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2	cutaneous T-cell lymphoma-associated antigen 1	protein-coding	0.514	0.653	0.442	0.107	0.464	0.328	0.332	0.132	0.022	0.043	0.080	0.147	0.256	0.045	0.050	0.328	0.479	1.489	2.074	0.252	0.355	11.031	2.218	0.233	0.247	0.109	0.212	0.114	0.075	0.336	0.159	0.240	0.423	0.114	0.073	0.142	0.287	0.400	0.643	0.007	0.073	0.026	0.032	0.332	0.147		0.055	0.094	0.034
7805	chr8	96144941	96162724	+	0	NA	intron (NM_024613, intron 1 of 1)	AluSz|SINE|Alu	7883	NM_024613	79666	Hs.29724	NM_024613	ENSG00000175895	PLEKHF2	EAPF|PHAFIN2|ZFYVE18	pleckstrin homology and FYVE domain containing 2	protein-coding	nan	1.313	5.455	0.898	0.946	0.486	0.267	0.673	0.171	0.298	0.136	1.012	2.124	0.304	0.100	0.858	0.884	1.048	nan	1.265	1.215	1.505	0.514	1.342	1.452	2.902	3.253	3.159	3.932	1.200	0.993	0.636	1.543	1.424	1.444	1.154	2.085	0.858	0.645	0.238	0.620	0.334	0.515	0.267	1.012	0.131	0.551	0.301	0.409
52	chr1	7392464	7403011	+	0	NA	intron (NM_015215, intron 5 of 22)	intron (NM_015215, intron 5 of 22)	-433592	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle associated membrane protein 3	protein-coding	1.175	nan	1.405	2.419	1.413	0.638	0.480	0.163	0.065	0.685	0.328	1.166	8.591	0.031	0.079	1.079	1.837	0.255	0.631	2.748	2.467	2.157	0.557	0.227	0.254	0.249	nan	nan	6.468	nan	0.701	1.822	2.389	1.144	1.389	0.380	0.740	1.533	1.082	2.249	1.233	0.190	1.068	0.480	1.166	0.644	1.465	1.768	0.175
8115	chr9	35070374	35082068	+	0	NA	intron (NM_004629, intron 8 of 13)	intron (NM_004629, intron 8 of 13)	-3482	NM_007126	7415	Hs.529782	NM_007126	ENSG00000165280	VCP	ALS14|CMT2Y|HEL-220|HEL-S-70|IBMPFD|IBMPFD1|TERA|p97	valosin containing protein	protein-coding	2.848	nan	3.132	2.790	3.117	1.632	1.967	1.585	0.260	1.738	0.758	3.264	6.240	1.797	0.110	2.130	2.061	4.552	5.912	5.107	4.726	7.431	3.369	4.493	4.770	3.262	4.383	3.633	6.191	5.001	5.600	1.917	2.982	3.482	4.148	4.298	3.542	3.548	1.881	1.846	1.805	0.645	1.706	1.967	3.264	0.290	1.448	0.669	1.296
3842	chr18	55861432	55911131	+	0	NA	intron (NM_001144970, intron 1 of 28)	MIR3|SINE|MIR	-2473	NM_001144966	23327	Hs.185677	NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding	nan	1.532	1.018	0.494	0.632	0.342	0.585	0.500	0.061	0.148	0.113	0.474	0.829	0.055	0.083	0.627	0.747	0.963	3.515	0.965	1.021	1.944	0.769	0.812	0.829	0.397	0.617	2.467	2.910	0.627	0.486	0.339	0.545	0.763	1.765	0.457	0.981	nan	1.494	0.496	0.429	0.155	0.286	0.585	0.474	0.239	0.112	0.221	0.260
3358	chr17	30917279	30943339	+	0	NA	intron (NM_001303279, intron 21 of 21)	intron (NM_001303279, intron 21 of 21)	116204	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding	nan	1.036	1.343	0.204	0.901	0.520	0.212	0.092	0.100	0.132	0.158	0.523	0.393	0.083	0.131	0.454	0.389	0.206	0.306	nan	1.750	0.625	0.211	0.280	0.316	1.872	2.179	0.581	0.822	nan	2.399	0.217	0.237	0.242	0.289	1.047	3.480	1.263	0.685	0.113	0.148	0.077	0.344	0.212	0.523	0.262	0.071	0.068	0.902
593	chr1	156553145	156579199	+	0	NA	intron (NM_015590, intron 6 of 7)	intron (NM_015590, intron 6 of 7)	4614	NM_144772	128240	Hs.528320	NM_144772	ENSG00000163382	NAXE	AIBP|APOA1BP|PEBEL|YJEFN1	NAD(P)HX epimerase	protein-coding	nan	nan	1.529	0.877	0.811	0.493	0.736	0.499	0.161	1.356	0.702	0.905	1.717	1.044	0.154	1.801	1.787	1.213	2.109	1.678	nan	3.469	0.989	1.323	1.374	1.667	2.561	3.911	3.991	1.541	1.298	1.780	2.349	1.259	1.273	1.350	2.628	1.617	0.927	0.349	1.208	0.160	0.178	0.736	0.905	0.441	2.141	0.785	0.515
188	chr1	32698663	32709176	+	0	NA	intron (NR_026850, intron 3 of 6)	AluSz6|SINE|Alu	3392	NR_026850	339483	Hs.471067	NR_026850		MTMR9LP	MTMR9L	myotubularin related protein 9-like, pseudogene	pseudo	3.617	nan	2.083	4.808	3.016	1.739	1.392	0.278	0.253	0.865	0.556	4.091	5.852	0.807	0.127	2.305	3.497	1.640	2.352	5.739	4.074	nan	1.148	3.276	3.307	0.641	1.113	2.836	4.550	nan	1.064	1.091	1.451	0.753	0.568	0.383	0.847	2.457	nan	5.849	3.357	0.191	1.759	1.392	4.091	0.596	2.065	0.693	0.244
7472	chr7	129249997	129255867	+	0	NA	intron (NM_005011, intron 1 of 10)	intron (NM_005011, intron 1 of 10)	1389	NM_001293164	4899	Hs.654363	NM_005011	ENSG00000106459	NRF1	ALPHA-PAL	nuclear respiratory factor 1	protein-coding	5.456	1.849	3.321	2.920	3.697	1.817	4.832	2.538	0.209	2.770	1.275	7.281	4.881	4.574	0.154	6.330	5.356	8.139	9.079	7.428	7.292	6.639	2.948	11.069	10.548	3.646	4.607	3.903	7.228	6.458	6.628	5.613	9.558	4.817	4.497	6.084	5.130	3.565	2.266	2.676	3.397	0.714	2.367	4.832	7.281	1.137	1.985	1.377	0.890
402	chr1	91965429	91969236	+	0	NA	exon (NM_001134420, exon 2 of 12)	exon (NM_001134420, exon 2 of 12)	667	NM_001134420	8317	Hs.533573	NM_003503	ENSG00000097046	CDC7	CDC7L1|HsCDC7|Hsk1|huCDC7	cell division cycle 7	protein-coding	nan	4.702	4.876	5.167	7.031	3.444	6.212	4.421	0.295	1.769	1.043	5.425	12.907	5.037	0.296	7.489	6.063	8.120	11.436	11.493	nan	12.778	8.665	14.222	15.580	9.267	11.120	12.785	19.335	nan	11.406	4.500	7.390	5.483	5.823	10.946	10.528	5.244	3.069	7.099	3.153	0.992	5.003	6.212	5.425	1.837	2.855	3.009	3.802
5221	chr22	26549663	26569320	+	0	NA	Intergenic	Intergenic	-5949	NM_001184773	23544	Hs.194766	NM_021115	ENSG00000100095	SEZ6L	-	seizure related 6 homolog like	protein-coding	nan	1.485	0.478	0.631	2.163	1.240	0.703	0.084	0.042	0.823	0.312	0.557	4.728	0.022	0.078	0.333	0.257	0.119	nan	0.818	0.799	2.688	1.022	0.140	0.120	2.309	nan	0.507	0.904	1.670	1.645	0.615	1.152	0.823	0.941	0.452	nan	4.789	2.622	0.118	0.307	0.290	0.179	0.703	0.557	0.214	0.372	0.475	0.050
1940	chr12	51610016	51621194	+	0	NA	Intergenic	AluSx|SINE|Alu	-4066	NM_001330422	5463	Hs.555886	NM_002702	ENSG00000184271	POU6F1	BRN5|MPOU|TCFB1	POU class 6 homeobox 1	protein-coding	nan	1.818	1.544	0.902	1.256	0.616	1.164	0.832	0.221	1.280	0.764	1.693	2.472	1.282	0.098	nan	6.941	1.902	2.268	3.449	nan	3.022	1.085	4.894	5.100	1.637	nan	2.189	nan	2.576	2.732	1.837	3.394	2.225	1.731	1.635	2.028	1.798	1.258	0.534	1.990	0.390	1.039	1.164	1.693	0.532	1.151	2.750	0.666
1641	chr11	112095990	112099528	+	0	NA	intron (NM_000317, intron 1 of 5)	intron (NM_000317, intron 1 of 5)	671	NM_000317	5805	Hs.503860	NM_000317	ENSG00000150787	PTS	PTPS	6-pyruvoyltetrahydropterin synthase	protein-coding	2.460	3.358	2.106	4.150	4.722	1.766	2.718	1.130	0.090	2.087	0.798	4.733	9.017	3.485	0.139	11.010	15.892	4.098	6.961	8.296	7.421	6.660	2.958	7.425	8.109	5.074	nan	5.407	7.535	4.543	4.495	4.622	10.543	3.904	3.442	2.374	3.902	2.443	1.664	3.653	3.183	0.615	2.260	2.718	4.733	1.021	2.321	3.050	1.019
7005	chr6	139337172	139354743	+	0	NA	Intergenic	Intergenic	-3862	NM_021243	58527	Hs.600861	NM_021243	ENSG00000146386	ABRACL	C6orf115|Costars|HSPC280|PRO2013	ABRA C-terminal like	protein-coding	3.448	1.995	2.328	3.199	2.620	1.316	1.847	0.922	0.127	1.515	0.699	1.261	4.206	4.700	0.206	0.583	0.577	1.936	2.735	3.975	2.749	nan	2.234	1.858	1.877	1.375	1.842	2.025	3.140	1.707	1.826	0.401	1.080	6.649	6.220	0.503	nan	1.940	1.106	2.120	1.055	1.387	0.832	1.847	1.261	0.375	0.994	0.206	0.162
640	chr1	165407426	165434821	+	0	NA	Intergenic	Intergenic	-6531	NM_006917	6258	Hs.26550	NM_006917	ENSG00000143171	RXRG	NR2B3|RXRC	retinoid X receptor gamma	protein-coding	1.272	nan	1.189	0.729	0.551	0.248	0.513	0.154	0.071	0.149	0.209	0.124	2.001	0.032	0.109	0.465	0.414	0.404	0.876	0.673	nan	0.207	0.120	0.130	0.127	0.224	0.364	1.415	nan	0.948	0.786	0.393	0.615	1.232	2.889	1.774	4.344	0.408	0.444	0.065	0.189	0.284	0.241	0.513	0.124	0.272	0.037	0.094	2.160
6139	chr5	2794218	2803155	+	0	NA	Intergenic	AluSz|SINE|Alu	46441	NR_122125	153571	Hs.148486	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding	0.420	0.804	0.852	0.158	1.739	0.884	0.338	0.172	0.127	0.080	0.145	6.146	0.649	0.018	0.115	0.321	0.209	0.222	nan	5.778	7.305	0.111	0.095	0.082	0.030	0.202	0.287	nan	0.168	nan	2.185	0.181	0.229	0.076	0.124	0.125	0.163	0.219	nan	0.742	0.478		0.398	0.338	6.146	0.229	0.034	0.089	
1384	chr11	35235126	35261420	+	0	NA	intron (NM_001202556, intron 7 of 7)	intron (NM_001202556, intron 7 of 7)	87856	NM_001202556	960	Hs.502328	NM_000610	ENSG00000026508	CD44	CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1	CD44 molecule (Indian blood group)	protein-coding	0.770	1.409	nan	0.344	0.217	0.108	1.622	0.272	0.129	0.148	0.171	0.087	0.792	0.038	0.118	0.486	0.214	1.271	3.878	0.365	0.418	0.411	0.163	0.285	0.272	0.502	0.758	0.234	0.235	0.438	0.266	0.180	0.263	0.420	0.417	0.361	nan	0.641	0.528	0.201	0.278	0.127	0.063	1.622	0.087	0.030	0.027	0.030	0.089
5205	chr22	24127574	24133479	+	0	NA	intron (NM_001317946, intron 1 of 8)	Tigger8|DNA|TcMar-Tigger	1408	NM_001007468	6598	Hs.534350	NM_003073	ENSG00000099956	SMARCB1	BAF47|CSS3|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	2.610	nan	3.319	1.926	2.986	1.709	2.015	1.584	0.166	1.227	0.329	3.922	6.900	1.897	0.123	3.407	3.465	3.498	5.336	5.029	5.735	3.211	1.536	7.185	7.642	3.082	4.423	3.810	5.561	4.320	3.749	2.121	3.254	2.448	3.205	2.797	2.914	5.998	3.228	1.391	3.144	0.694	1.775	2.015	3.922	1.255	1.992	1.195	0.887
7565	chr7	157941544	157951402	+	0	NA	intron (NM_130843, intron 6 of 21)	L2a|LINE|L2	299196	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	ncRNA	0.545	0.419	nan	0.155	1.084	0.569	3.079	0.069	0.114	0.353	0.234	5.960	4.594	0.056	0.230	1.129	2.265	0.133	0.129	0.439	0.506	0.713	0.252	0.037	0.067	0.125	0.206	2.053	3.245	0.887	0.416	0.964	1.045	0.672	0.735	0.069	0.163	0.857	0.582	0.243	1.447	0.146	0.185	3.079	5.960	0.964	0.876	0.509	0.037
2068	chr12	86258944	86272791	+	0	NA	Intergenic	Intergenic	-2206	NM_006183	4922	Hs.80962	NM_006183	ENSG00000133636	NTS	NMN-125|NN|NT|NT/N|NTS1	neurotensin	protein-coding	0.798	0.695	0.759	0.092	0.463	0.150	0.055	0.234	0.157	0.760	0.486	0.225	0.606	0.054	0.125	0.358	0.182	0.496	0.267	0.368	0.557	3.305	1.117	0.392	0.422	4.973	5.304	0.523	0.425	0.533	0.276	0.155	0.265	1.431	1.655	0.299	0.519	1.254	0.831		0.084	0.262	0.080	0.055	0.225	0.021	0.320	0.022	0.081
6800	chr6	49877253	49883543	+	0	NA	Intergenic	Intergenic	-35589	NM_001205220	167	Hs.109620	NM_001131	ENSG00000124812	CRISP1	AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP	cysteine rich secretory protein 1	protein-coding	0.775	1.236	1.937	0.668	1.601	0.878	1.380	0.181	0.127	0.153	0.104	0.800	2.532	0.066	0.120	2.728	1.822	7.099	2.791	0.490	0.647	0.219	0.124	2.042	2.177	0.268	0.354	2.853	nan	0.213	0.124	1.405	2.299	0.286	0.251	0.462	1.454	0.357	0.537	0.312	1.164	0.074	0.151	1.380	0.800	0.179	0.695	1.030	0.275
1464	chr11	64831883	64836769	+	0	NA	Intergenic	Intergenic	-8317	NM_005468	10004	Hs.13967	NM_005468	ENSG00000168060	NAALADL1	I100|NAALADASEL	N-acetylated alpha-linked acidic dipeptidase like 1	protein-coding	nan	0.565	0.895	2.678	4.233	2.395	0.609	0.136	0.163	2.401	0.901	5.842	0.950	0.111	0.099	6.212	8.324	0.318	0.473	13.333	13.768	6.307	1.804	0.676	0.780	0.282	0.640	4.213	5.302	0.396	0.339	0.935	0.923	1.128	0.914	0.496	1.124	0.792	0.810	4.362	1.644	0.352	5.980	0.609	5.842	1.474	0.069	0.242	0.176
3440	chr17	46566271	46591202	+	0	NA	Intergenic	Intergenic	29536	NM_002144	3211	Hs.99992	NM_002144	ENSG00000120094	HOXB1	HCFP3|HOX2|HOX2I|Hox-2.9	homeobox B1	protein-coding	0.765	4.549	nan	2.316	2.977	1.550	0.108	0.099	0.077	3.099	1.360	2.755	8.717	0.121	0.123	0.366	0.353	0.118	0.214	1.970	nan	3.062	1.961	0.488	0.582	0.232	0.348	2.505	nan	0.461	0.146	0.149	0.269	3.021	2.578	0.136	0.242	3.282	1.562	1.311	3.306	1.076	0.022	0.108	2.755	0.023	1.223	0.028	0.045
4428	chr2	89325618	89333650	+	0	NA	Intergenic	AluSx|SINE|Alu	217750	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA	nan	0.434	nan	0.065	0.176	0.139	0.016	0.096	0.068	1.169	0.434	0.069	0.208	0.054	0.135	0.670	0.971	0.086	0.079	0.242	0.258	0.188	0.088	1.616	1.611	0.128	0.182	0.103	0.178	0.256	0.088	0.283	0.289	0.051	0.085	0.153	0.193	5.007	3.768	0.007		0.012	0.014	0.016	0.069	0.049	0.013	0.087	0.039
7058	chr6	155052670	155056690	+	0	NA	exon (NM_001286188, exon 1 of 21)	exon (NM_001286188, exon 1 of 21)	168	NM_014892	22828	Hs.591329	NM_014892	ENSG00000213079	SCAF8	RBM16	SR-related CTD associated factor 8	protein-coding	nan	4.618	5.925	7.685	6.519	4.353	7.937	3.118	0.323	2.055	1.124	6.672	11.676	6.127	0.231	10.721	9.973	10.289	13.439	12.649	nan	14.503	8.972	14.632	15.667	3.416	4.463	13.682	18.699	12.858	12.024	5.231	8.375	7.322	6.877	9.201	nan	3.021	1.479	4.735	4.508	1.564	3.303	7.937	6.672	2.051	4.239	2.285	2.614
4354	chr2	53729693	53759944	+	0	NA	Intergenic	Intergenic	-250102	NM_001346127	494143	Hs.585944	NM_001008708	ENSG00000143942	CHAC2	-	ChaC cation transport regulator homolog 2	protein-coding	6.926	3.996	6.774	0.648	0.334	0.189	0.604	0.110	0.069	0.347	0.225	0.479	0.665	0.043	0.127	0.344	0.315	0.215	0.316	1.270	1.407	1.865	0.584	0.409	0.404	1.423	1.834	2.374	1.678	0.599	0.238	0.212	0.379	17.578	17.452	0.422	0.923	0.872	0.633	0.345	0.151	3.921	0.250	0.604	0.479	0.267	3.231	0.082	0.250
5835	chr4	10049351	10067084	+	0	NA	Intergenic	MLT2D|LTR|ERVL	-16345	NM_001001290	56606	Hs.444612	NM_020041	ENSG00000109667	SLC2A9	GLUT9|GLUTX|UAQTL2|URATv1	solute carrier family 2 member 9	protein-coding	nan	nan	nan	0.282	0.099	0.045	0.348	0.055	0.064	0.106	0.122	0.108	6.209	0.049	0.079	0.302	0.251	0.340	0.537	0.251	0.249	0.725	0.252	0.297	0.246	0.271	0.498	0.175	0.192	0.492	0.342	0.139	0.183	0.130	0.196	0.746	1.616	nan	0.550	0.151	0.126	0.034	0.111	0.348	0.108	0.054	0.029	0.034	0.701
3426	chr17	43441498	43463273	+	0	NA	Intergenic	AluSz|SINE|Alu	50627	NM_199282	201176	Hs.205326	NM_174919	ENSG00000159314	ARHGAP27	CAMGAP1|PP905|SH3D20|SH3P20	Rho GTPase activating protein 27	protein-coding	0.929	1.247	nan	0.511	1.096	0.648	0.696	1.072	0.332	0.296	0.192	0.350	0.654	5.555	0.272	0.544	0.612	1.072	3.479	0.967	nan	2.389	0.531	0.670	0.703	0.288	0.552	1.207	nan	0.883	0.533	0.460	0.460	0.308	0.554	0.384	0.709	0.977	0.718	0.053	0.131	0.044	0.080	0.696	0.350	0.103	0.107	0.105	0.136
2018	chr12	69750931	69755666	+	0	NA	promoter-TSS (NM_006530)	promoter-TSS (NM_006530)	-192	NM_001300950	8089	Hs.4029	NM_006530	ENSG00000127337	YEATS4	4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9	YEATS domain containing 4	protein-coding	4.079	3.845	2.085	4.760	5.406	3.485	4.334	1.630	0.406	3.816	2.215	4.775	10.087	2.096	0.073	5.520	4.285	4.821	7.752	10.624	nan	11.740	7.976	16.071	17.439	4.972	5.409	9.993	14.796	7.458	7.138	3.498	5.332	5.196	6.911	7.527	4.307	5.394	2.496	2.476	4.456	1.185	1.776	4.334	4.775	0.931	2.383	1.416	1.403
8374	chrX	21941339	21978633	+	0	NA	intron (NM_004595, intron 1 of 10)	AluSg|SINE|Alu	1295	NM_001258423	6611	Hs.724874	NM_004595	ENSG00000102172	SMS	MRSR|SPMSY|SRS|SpS	spermine synthase	protein-coding	0.987	1.234	0.747	0.759	1.049	0.534	0.518	0.682	0.179	0.303	0.211	1.471	0.711	2.083	0.090	0.317	0.362	0.719	1.398	2.017	1.832	1.130	0.425	0.429	0.427	0.701	1.022	0.636	1.108	1.196	1.136	0.392	0.595	0.421	0.419	0.731	0.928	0.671	0.459	0.063	0.136	0.066	0.475	0.518	1.471	0.047	0.174	0.144	0.293
464	chr1	116762375	116772877	+	0	NA	Intergenic	Intergenic	113250	NM_152367	126868	Hs.376194	NM_152367	ENSG00000173212	MAB21L3	C1orf161	mab-21 like 3	protein-coding	nan	0.919	1.015	0.155	0.168	0.107	0.200	0.121	0.078	0.103	0.024	0.103	0.409	0.021	0.097	1.401	0.864	10.671	4.346	0.387	nan	0.296	0.185	1.909	2.156	0.313	0.486	0.619	0.448	0.741	0.647	3.163	5.491	0.092	0.106	0.324	0.651	0.524	0.494	0.128	0.152	0.028	0.326	0.200	0.103	0.168	0.058	3.672	0.093
2977	chr15	87187840	87222068	+	0	NA	intron (NM_152336, intron 22 of 24)	intron (NM_152336, intron 22 of 24)	-271157	NR_135682	105370954	Hs.668501	NR_135682	ENSG00000259636	LOC105370954	-	uncharacterized LOC105370954	ncRNA	0.587	nan	0.691	0.242	0.235	0.094	0.456	0.077	0.051	0.060	0.082	0.126	0.435	0.025	0.071	0.301	0.177	0.162	0.234	0.254	0.338	3.971	1.827	0.084	0.067	0.168	0.267	0.309	0.312	0.459	0.244	0.141	0.203	0.061	0.052	0.241	0.384	0.089	0.190	0.021	0.052	0.005	0.051	0.456	0.126	0.043	0.061	0.037	0.061
2011	chr12	68597944	68604249	+	0	NA	intron (NM_018402, intron 3 of 4)	Tigger2|DNA|TcMar-Tigger	18475	NM_018402	55801	Hs.272350	NM_018402	ENSG00000111536	IL26	AK155|IL-26	interleukin 26	protein-coding	1.401	1.127	1.104	0.741	1.665	0.822	5.156	0.118	0.128	1.797	1.013	1.994	2.727	0.035	0.100	0.275	0.361	0.331	0.455	4.120	nan	1.502	0.404	0.236	0.242	1.756	2.490	1.582	2.141	1.064	0.966	0.191	0.209	3.228	4.754	2.411	4.054	6.016	2.573	1.179	3.308	0.872	3.629	5.156	1.994	0.846	0.177	0.096	1.867
3452	chr17	48860578	48882134	+	0	NA	Intergenic	AluSz6|SINE|Alu	25345	NR_107026	102466918		NR_107026	ENSG00000278672	MIR8059	hsa-mir-8059	microRNA 8059	ncRNA	2.267	1.139	nan	0.146	0.383	0.237	0.445	0.120	0.157	0.204	0.181	0.106	0.755	0.111	0.104	0.473	0.369	0.331	0.422	0.493	nan	0.610	0.266	0.602	0.590	2.149	2.807	0.970	nan	1.567	1.702	0.281	0.461	0.430	0.548	2.440	9.720	0.711	0.478	0.283	0.173	0.089	0.151	0.445	0.106	0.573	0.321	0.082	5.674
6	chr1	993376	1016523	+	0	NA	Intergenic	CpG	4738	NM_001205252	401934	Hs.568137	NM_001205252	ENSG00000237330	RNF223	-	ring finger protein 223	protein-coding	0.721	nan	1.392	0.258	0.615	0.325	0.221	0.474	0.098	0.231	0.113	0.160	1.581	0.691	0.088	2.801	4.514	0.934	1.356	1.305	1.052	1.365	0.356	10.246	10.404	0.258	nan	nan	4.334	nan	0.237	1.524	2.379	0.210	0.227	0.188	0.306	0.365	0.320	0.679	1.083	0.033	0.742	0.221	0.160	0.251	0.288	0.796	0.075
8334	chr9	139079370	139100723	+	0	NA	intron (NM_178138, intron 5 of 5)	intron (NM_178138, intron 5 of 5)	4973	NM_014564	8022	Hs.148427	NM_014564	ENSG00000107187	LHX3	CPHD3|LIM3|M2-LHX3	LIM homeobox 3	protein-coding	nan	0.737	0.746	0.252	0.464	0.229	0.642	0.087	0.075	0.102	0.054	0.185	0.767	0.139	0.053	0.237	0.290	0.137	0.137	0.555	0.675	nan	0.258	0.051	0.069	0.085	0.225	0.365	0.427	0.940	0.846	0.364	0.309	0.434	0.470	0.733	1.279	0.276	0.253	0.559	0.264	0.099	6.768	0.642	0.185	0.317	0.033	0.065	0.075
3867	chr18	60920322	60941323	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	55791	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding	0.897	1.239	3.338	2.290	2.453	1.347	0.432	0.183	0.092	0.812	0.294	3.017	4.188	0.036	0.124	1.770	2.679	3.394	3.340	7.484	7.084	4.091	1.748	1.072	nan	0.305	nan	4.020	4.085	0.830	0.584	1.997	2.539	4.913	6.400	0.150	0.188	6.121	3.470	3.730	0.754	1.106	0.665	0.432	3.017	0.264	0.430	2.140	0.036
8194	chr9	92213309	92227056	+	0	NA	intron (NM_006705, intron 1 of 3)	CpG	255	NM_006705	10912	Hs.9701	NM_006705	ENSG00000130222	GADD45G	CR6|DDIT2|GADD45gamma|GRP17	growth arrest and DNA damage inducible gamma	protein-coding	1.390	nan	7.176	5.568	3.028	1.609	1.969	0.157	0.046	1.483	0.844	3.325	5.450	0.147	0.092	1.040	1.406	0.890	nan	8.023	5.833	4.898	1.295	0.726	0.792	0.792	1.254	4.813	7.777	1.927	2.825	0.591	1.098	3.244	2.992	1.403	2.681	2.129	1.013	1.688	2.638	0.976	2.087	1.969	3.325	0.835	1.630	0.662	0.618
1304	chr11	11574117	11611972	+	0	NA	intron (NM_198516, intron 1 of 10)	L3|LINE|CR1	50517	NM_198516	374378	Hs.655152	NM_198516	ENSG00000110328	GALNT18	GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0.791	nan	1.439	0.123	0.399	0.187	0.508	0.075	0.106	0.557	0.398	0.863	0.638	0.023	0.084	nan	0.501	0.259	0.363	1.739	1.705	0.631	0.294	0.612	0.629	0.883	nan	0.632	0.491	0.511	0.409	0.277	0.325	0.351	0.373	0.248	0.291	0.948	nan	2.541	0.211	0.066	0.052	0.508	0.863	0.087	0.161	0.070	0.092
7656	chr8	40004922	40023289	+	0	NA	Intergenic	MIR|SINE|MIR	3118	NM_020130	56892	Hs.591849	NM_020130	ENSG00000176907	C8orf4	TC-1|TC1	chromosome 8 open reading frame 4	protein-coding	0.590	nan	nan	3.468	0.837	0.566	0.341	0.089	0.079	0.153	0.107	0.918	3.387	0.337	0.119	0.357	0.278	0.328	0.659	0.598	0.660	0.112	0.061	0.255	0.386	0.117	0.182	0.659	0.668	0.363	0.157	0.139	0.161	3.943	4.325	0.142	0.248	0.260	0.397	1.332	0.077	0.935	0.057	0.341	0.918		0.293	0.026	0.061
8017	chr9	2416683	2428170	+	0	NA	Intergenic	Intergenic	-199348	NM_001018056	7436	Hs.370422	NM_003383	ENSG00000147852	VLDLR	CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH	very low density lipoprotein receptor	protein-coding	0.837	2.275	1.791	0.372	2.196	1.194	1.185	0.171	0.085	2.525	0.759	0.877	3.974	0.068	0.071	0.257	0.136	0.203	0.631	0.936	0.987	5.402	2.377	0.271	0.268	1.108	1.652	0.742	1.525	0.477	0.222	0.091	0.184	3.245	3.151	0.210	nan	3.669	2.474	0.641	1.055	0.797	0.069	1.185	0.877	0.102	0.079	0.078	0.054
5763	chr3	189099724	189115869	+	0	NA	Intergenic	Intergenic	-149413	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA	1.173	1.427	0.881	0.153	5.064	2.593	0.310	0.233	0.134	0.206	0.250	0.426	0.430	0.007	0.082	0.330	0.253	0.309	0.823	0.297	0.361	7.002	2.763	0.348	0.354	0.364	0.578	0.426	0.392	0.850	0.569	0.132	0.190	1.142	1.115	0.317	0.885	0.777	0.516	0.069	0.060	0.337	0.152	0.310	0.426	0.066	0.075	0.031	0.084
4381	chr2	62515233	62537122	+	0	NA	Intergenic	MER91B|DNA|hAT-Tip100	83521	NM_001319075	10678	Hs.173203	NM_006577	ENSG00000170340	B3GNT2	3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	1.283	1.707	nan	0.982	0.639	0.291	1.276	0.255	0.155	0.578	0.265	0.776	2.632	0.104	0.110	0.576	0.688	0.386	0.811	1.008	0.951	nan	0.854	0.873	0.918	0.444	0.781	5.945	4.962	0.417	0.324	0.420	0.476	0.522	0.446	0.429	0.965	1.826	1.252	1.529	0.816	0.074	0.113	1.276	0.776	0.248	0.628	0.181	0.068
5953	chr4	81483836	81492721	+	0	NA	intron (NM_152770, intron 2 of 5)	intron (NM_152770, intron 2 of 5)	231404	NM_152770	255119	Hs.527104	NM_152770	ENSG00000197826	C4orf22	-	chromosome 4 open reading frame 22	protein-coding	0.589	0.562	0.591	0.257	0.889	0.542	0.091	0.238	0.054	0.158	0.148	0.539	0.679	0.073	0.094	0.451	0.248	0.493	0.855	0.917	0.920	4.139	1.767	0.232	0.220	0.107	nan	0.937	0.834	0.337	0.144	0.118	0.202	0.456	0.439	0.161	nan	0.523	0.492	0.573	6.267	0.043	0.072	0.091	0.539		0.012	0.034	
3053	chr16	12591170	12605572	+	0	NA	intron (NM_032167, intron 19 of 20)	L1MB8|LINE|L1	-215807	NR_039869	100616195		NR_039869	ENSG00000264733	MIR4718	-	microRNA 4718	ncRNA	1.022	0.578	nan	0.497	1.259	0.555	0.712	0.073	0.112	0.411	0.258	2.450	1.525	0.017	0.056	0.558	0.603	0.122	0.097	1.187	1.231	3.935	1.339	0.467	0.539	0.840	1.172	2.664	2.843	nan	0.320	0.320	0.399	0.422	0.394	0.242	0.557	2.944	1.734	0.748	0.613	0.072	0.396	0.712	2.450	0.147	0.412	0.199	0.104
2206	chr12	128074004	128080599	+	0	NA	Intergenic	LTR9|LTR|ERV1	43711	NR_120451	101927637	Hs.170413	NR_120451	ENSG00000256022	LOC101927637	-	uncharacterized LOC101927637	ncRNA	0.815	0.655	0.721	5.930	1.483	0.607	0.537	0.077	0.085	0.643	0.257	1.233	0.842	0.049	0.138	0.375	0.262	0.192	0.212	2.534	2.129	nan	3.762	0.239	0.168	0.647	1.008	13.364	9.572	0.447	0.173	0.119	0.189	0.667	0.656	0.131	0.173	1.691	1.226	0.730	0.162	0.201	0.049	0.537	1.233	0.057	0.229	0.059	0.037
2177	chr12	120727780	120741519	+	0	NA	Intergenic	Intergenic	-5475	NM_012240	23409	Hs.50861	NM_012240	ENSG00000089163	SIRT4	SIR2L4	sirtuin 4	protein-coding	2.078	1.654	1.802	1.930	1.314	0.722	1.451	1.234	0.398	1.031	0.583	1.844	4.353	2.662	0.184	3.609	3.812	3.131	4.673	4.076	4.144	nan	4.396	5.688	6.538	2.436	2.670	4.123	5.101	4.375	3.922	4.053	4.310	3.203	3.553	3.723	3.039	2.579	1.536	1.171	2.098	0.380	0.687	1.451	1.844	0.489	1.152	1.101	0.793
5550	chr3	133190412	133198255	+	0	NA	TTS (NM_003571)	TTS (NM_003571)	15657	NR_135276	85003	Hs.659202	NR_135276	ENSG00000249993	BFSP2-AS1	-	BFSP2 antisense RNA 1	ncRNA	1.698	nan	nan	1.433	10.000	4.807	0.718	0.359	0.164	0.944	0.537	0.497	4.838	0.042	0.056	0.367	0.181	0.647	2.588	0.692	0.956	5.122	1.192	0.696	0.727	1.598	1.795	6.407	5.198	nan	1.751	0.192	0.272	0.720	1.409	0.984	3.165	1.821	1.053	6.813	5.258	0.255	0.140	0.718	0.497	1.857	3.172	0.051	0.962
7841	chr8	102289188	102314515	+	0	NA	Intergenic	Intergenic	-79270	NR_002182	83955	Hs.567608	NM_032031	ENSG00000228224	NACAP1	FKSG17	nascent polypeptide associated complex alpha subunit pseudogene 1	pseudo	2.034	nan	nan	0.559	1.269	0.658	0.631	0.713	0.139	0.161	0.074	1.160	4.384	0.047	0.086	0.356	0.345	0.281	0.616	2.845	2.511	nan	0.624	0.521	0.585	1.427	nan	3.977	nan	nan	0.986	0.326	0.354	0.464	0.545	1.130	nan	1.967	1.156	0.539	3.802	0.120	0.187	0.631	1.160	0.837	0.575	0.051	0.697
7330	chr7	75403054	75423559	+	0	NA	intron (NM_006072, intron 1 of 3)	HERVH-int|LTR|ERV1	5758	NM_006072	10344	Hs.131342	NM_006072	ENSG00000006606	CCL26	IMAC|MIP-4a|MIP-4alpha|SCYA26|TSC-1	C-C motif chemokine ligand 26	protein-coding	nan	0.667	1.558	0.073	0.241	0.141	0.239	0.168	0.195	0.168	0.175	0.087	0.269	0.127	0.111	0.330	0.310	0.240	nan	0.348	0.480	0.457	0.133	0.156	0.123	0.345	nan	0.196	nan	1.016	0.815	0.222	0.255	0.108	0.145	1.432	5.615	0.824	0.697	0.030	0.069	0.031	0.096	0.239	0.087	0.240	0.055	0.058	0.718
785	chr1	202916998	202938988	+	0	NA	promoter-TSS (NM_001290629)	promoter-TSS (NM_001290629)	-293	NM_001290629	51094	Hs.5298	NM_015999	ENSG00000159346	ADIPOR1	ACDCR1|CGI-45|CGI45|PAQR1|TESBP1A	adiponectin receptor 1	protein-coding	2.483	3.089	2.721	1.990	2.673	1.504	1.678	0.696	0.110	1.120	0.619	2.934	4.311	0.517	0.096	2.352	2.839	2.131	3.286	4.928	4.601	3.830	2.222	nan	nan	1.294	1.698	2.935	4.195	1.098	0.802	0.607	0.993	1.665	1.714	2.408	5.717	1.963	0.927	0.777	3.260	0.295	0.885	1.678	2.934	0.212	0.756	0.248	3.370
6621	chr6	14435653	14455192	+	0	NA	Intergenic	Intergenic	-159737	NR_108096	102216342	Hs.563409	NR_108096	ENSG00000226673	LINC01108	LncRNA-ES1	long intergenic non-protein coding RNA 1108	ncRNA	1.517	nan	1.112	0.786	0.810	0.430	1.943	0.482	0.098	0.332	0.241	3.496	0.580	0.033	0.082	0.607	0.796	0.572	0.465	1.079	1.307	1.869	0.635	0.482	0.543	0.681	0.846	1.318	1.163	1.117	0.966	0.875	1.139	2.069	2.428	0.625	1.917	0.845	0.543	0.094	0.892	0.453	0.251	1.943	3.496	0.570	0.057	1.033	0.770
599	chr1	157323451	157332397	+	0	NA	Intergenic	PABL_A-int|LTR|ERV1	194386	NM_031281	83416	Hs.415950	NM_031281	ENSG00000143297	FCRL5	BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820	Fc receptor like 5	protein-coding	nan	nan	0.928	2.478	1.208	0.410	0.142	0.110	0.018	1.696	0.744	5.537	0.974	0.024	0.119	0.276	0.173	0.224	0.419	0.404	nan	3.161	1.345	0.078	0.141	0.209	0.367	9.450	7.184	0.818	0.621	0.417	0.482	0.744	0.339	0.271	0.876	2.393	1.316	0.019	7.775	0.094	0.009	0.142	5.537	0.032	0.210	0.222	0.236
4574	chr2	164537785	164542607	+	0	NA	intron (NM_001321825, intron 1 of 1)	MER5B|DNA|hAT-Charlie	52321	NM_018086	55137	Hs.593650	NM_018086	ENSG00000182263	FIGN	-	fidgetin, microtubule severing factor	protein-coding	0.881	0.914	nan	0.241	0.321	0.208	0.187	0.158	0.155	0.302	0.157	0.099	0.271	0.111	0.060	1.198	1.235	9.288	4.317	0.156	0.310	0.130	0.039	0.838	0.889	0.599	0.852	0.270	0.336	0.350	0.297	0.359	0.797	0.485	0.840	0.473	1.024	0.500	0.303	0.034	0.036	0.062	0.032	0.187	0.099		0.042	0.062	0.284
587	chr1	156181569	156184496	+	0	NA	TTS (NM_001286184)	TTS (NM_001286184)	253	NM_001199663	100527963	Hs.530479	NM_001199661	ENSG00000260238	PMF1-BGLAP	PMF1	PMF1-BGLAP readthrough	protein-coding	6.985	nan	6.882	4.835	4.369	3.063	5.313	3.305	0.384	3.123	1.851	5.610	24.659	4.365	0.171	7.167	6.398	10.988	17.237	10.563	nan	8.323	5.180	8.222	8.937	6.435	7.406	10.606	14.055	6.896	6.294	8.752	11.591	5.735	7.460	10.296	8.658	4.510	2.551	3.304	6.668	0.679	2.650	5.313	5.610	1.558	4.693	2.743	2.389
1235	chr10	123311568	123314984	+	0	NA	intron (NM_001144918, intron 2 of 15)	intron (NM_001144918, intron 2 of 15)	-22448	NM_001320654	2263	Hs.533683	NM_000141	ENSG00000066468	FGFR2	BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25	fibroblast growth factor receptor 2	protein-coding	nan	1.046	1.056		0.322	0.293	0.300	0.127		0.045		0.012	0.664	0.031	0.104	1.126	1.178	12.590	18.868	0.127	0.159	1.271	0.651	0.463	0.421	0.441	0.779	0.675	0.818	0.134	0.130	0.255	0.309	0.167	0.294	0.273	0.679	0.151	0.208		0.128	0.056	0.069	0.300	0.012	0.114	0.012	0.057	0.176
3814	chr18	50023681	50029571	+	0	NA	intron (NM_005215, intron 1 of 28)	intron (NM_005215, intron 1 of 28)	160084	NM_005215	1630	Hs.162025	NM_005215	ENSG00000187323	DCC	CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1	DCC netrin 1 receptor	protein-coding	nan	1.067	1.787	0.606	0.153	0.081	0.710	0.101	0.137	0.215	0.219	0.873	1.111	0.036	0.048	0.325	0.100	0.220	0.260	1.019	0.807	2.037	0.506	0.038	0.065	3.754	3.422	0.590	0.735	3.292	5.037	0.108	0.225	5.911	8.847	2.949	5.040	nan	1.621	0.076	0.123	1.605	0.178	0.710	0.873	0.017	0.673		3.257
298	chr1	50556639	50589954	+	0	NA	intron (NM_001144775, intron 1 of 6)	intron (NM_001144775, intron 1 of 6)	-1296	NM_001324212	1996	Hs.213050	NM_021952	ENSG00000162374	ELAVL4	HUD|PNEM	ELAV like RNA binding protein 4	protein-coding	2.730	1.243	1.322	1.718	1.730	0.866	1.445	0.087	0.091	2.023	1.415	3.873	4.303	0.065	0.117	0.352	0.343	0.197	0.185	6.483	6.483	3.844	1.790	0.214	0.218	2.834	3.156	2.283	3.681	6.620	7.836	0.250	0.390	2.050	2.288	2.572	nan	2.003	1.296	0.883	2.000	0.561	2.388	1.445	3.873	0.642	0.440	0.163	0.975
95	chr1	15465233	15517500	+	0	NA	intron (NM_001278502, intron 2 of 2)	AluSc|SINE|Alu	6754	NM_001278501	727684	Hs.667584	NM_001278501		C1orf195	-	chromosome 1 open reading frame 195	protein-coding	1.366	1.117	nan	1.650	0.564	0.230	0.397	0.225	0.059	0.223	0.121	0.249	1.502	0.312	0.106	0.340	0.336	1.168	2.214	1.202	1.206	1.213	0.339	0.734	nan	0.481	nan	3.219	3.994	nan	0.482	0.906	1.050	0.288	0.420	1.149	3.126	1.176	0.824	0.093	0.272	0.057	0.158	0.397	0.249	0.286	0.284	0.673	0.533
3291	chr17	16253872	16257773	+	0	NA	intron (NM_181716, intron 1 of 4)	CpG	990	NM_181716	201161	Hs.433422	NM_181716	ENSG00000166582	CENPV	3110013H01Rik|CENP-V|PRR6|p30	centromere protein V	protein-coding	7.506	3.089	4.007	3.492	7.231	3.850	6.745	0.249	0.084	1.290	1.100	8.172	8.375	0.863	0.075	12.917	11.679	5.999	nan	12.810	12.741	10.843	6.406	6.757	7.587	3.346	4.364	10.678	17.102	nan	17.283	5.338	10.298	3.683	3.430	13.713	8.671	3.751	2.046	2.543	1.782	0.391	3.586	6.745	8.172	1.866	9.226	1.428	3.760
8088	chr9	22096620	22125828	+	0	NA	intron (NR_003529, intron 14 of 18)	MIR|SINE|MIR	-101912	NM_078487	1030	Hs.72901	NM_004936	ENSG00000147883	CDKN2B	CDK4I|INK4B|MTS2|P15|TP15|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0.729	nan	nan	0.133	0.249	0.162	0.214	1.475	0.143	0.091	0.174	0.070	0.460	0.156	0.079	0.267	0.173	1.086	4.400	0.283	0.355	0.397	0.119	0.153	0.147	0.547	0.814	0.260	0.268	0.470	0.172	0.243	0.393	0.193	0.386	0.229	0.516	1.030	1.002	0.039	0.255	0.026	0.087	0.214	0.070	0.010	0.153	0.071	0.132
243	chr1	40279464	40370392	+	0	NA	intron (NM_001312691, intron 1 of 9)	AluSx3|SINE|Alu	24255	NM_001312691	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding	13.685	1.241	nan	17.084	3.226	1.655	6.698	0.291	0.132	0.361	0.289	7.942	2.311	0.338	0.132	0.531	0.674	0.443	0.801	3.872	5.135	0.804	0.363	0.865	0.902	0.914	nan	40.269	34.804	0.812	0.658	0.799	nan	0.124	0.178	1.074	2.574	30.849	21.336	0.791	0.678	0.029	12.310	6.698	7.942	0.142	0.113	0.390	0.692
3835	chr18	55433753	55471911	+	0	NA	intron (NM_005603, intron 1 of 27)	AluSz|SINE|Alu	17495	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding	nan	1.336	1.493	1.079	1.677	0.858	0.939	1.248	0.207	0.485	0.269	2.196	1.173	0.057	0.090	0.719	0.797	1.025	2.271	1.248	1.327	6.130	2.080	1.725	1.979	0.365	0.565	1.851	2.603	0.560	0.505	0.405	0.750	1.880	2.414	0.231	0.480	nan	1.699	0.408	0.288	0.283	0.166	0.939	2.196	0.086	1.613	0.204	0.113
4731	chr2	222118856	222134718	+	0	NA	Intergenic	Intergenic	310291	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding	nan	0.762	0.948	0.166	0.257	0.122	0.235	0.076		0.079	0.099	0.131	nan	0.041	0.094	0.375	0.220	0.132	0.277	0.213	0.265	0.154	0.049	0.319	0.279	3.372	3.495	0.432	nan	0.481	0.186	0.110	0.267	0.134	0.102	0.311	nan	0.396	0.296	0.077	0.067	0.036	0.024	0.235	0.131	0.031	0.085	0.056	0.132
8241	chr9	114243300	114247529	+	0	NA	intron (NM_001080398, intron 3 of 50)	CpG	1611	NM_001080398	23392	Hs.368255	NM_001080398	ENSG00000136813	KIAA0368	ECM29	KIAA0368	protein-coding	5.527	3.678	nan	8.881	5.117	3.054	5.848	2.709	0.226	2.673	1.307	8.357	10.759	3.734	0.095	2.770	2.842	7.127	9.992	11.098	9.253	4.104	1.788	20.721	19.953	2.441	3.138	10.837	20.093	16.827	20.876	1.839	5.258	6.906	5.062	9.830	5.900	nan	2.708	4.585	3.960	1.109	2.594	5.848	8.357	1.488	4.971	1.232	2.494
2682	chr14	76929353	76940673	+	0	NA	intron (NM_004452, intron 5 of 10)	MIR|SINE|MIR	97323	NM_004452	2103	Hs.435845	NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen related receptor beta	protein-coding	1.153	0.688	0.843	0.966	0.353	0.085	0.988	0.182	0.056	0.041	0.103	1.062	0.551	0.038	0.097	0.308	0.289	0.170	0.205	5.387	6.072	0.123	0.064	0.432	0.463	0.611	0.968	1.414	nan	1.053	0.582	0.215	0.309	0.163	0.138	0.587	2.001	0.822	nan	0.400	0.772	0.042	0.225	0.988	1.062	0.173	0.106	0.044	0.340
6222	chr5	32272872	32288623	+	0	NA	intron (NM_001040446, intron 1 of 15)	intron (NM_001040446, intron 1 of 15)	32367	NM_001040446	54545	Hs.481836	NM_019061	ENSG00000150712	MTMR12	3-PAP|PIP3AP	myotubularin related protein 12	protein-coding	0.758	1.929	nan	1.012	0.631	0.284	0.356	0.600	0.286	0.568	0.342	1.441	1.128	0.200	0.110	3.834	5.581	2.986	2.199	0.806	1.091	1.547	0.504	0.515	0.580	0.875	1.225	1.364	1.545	2.501	2.302	2.484	3.356	0.740	0.849	0.300	0.941	1.204	0.794	0.166	0.377	0.188	0.125	0.356	1.441	0.130	0.104	1.605	0.251
6338	chr5	77141156	77151030	+	0	NA	Intergenic	Intergenic	-34387	NR_105012	101929154	Hs.252895	NR_105012		LOC101929154	-	uncharacterized LOC101929154	ncRNA	0.801	nan	0.603	0.867	0.462	0.162	1.807	0.080	0.066	0.112	0.093	0.461	1.676	0.363	0.110	0.146	0.120	0.209	0.335	0.367	0.324	nan	0.511	0.117	0.141	0.280	nan	0.631	0.837	1.774	1.480	0.145	0.140	0.445	0.445	0.773	1.756	0.256	0.185	0.401	9.516	0.125	0.217	1.807	0.461	0.020	0.062	0.020	0.717
5791	chr3	194095816	194117793	+	0	NA	Intergenic	Intergenic	13191	NM_004488	2814	Hs.73734	NM_004488	ENSG00000178732	GP5	CD42d|GPV	glycoprotein V platelet	protein-coding	nan	0.950	0.763	0.496	1.896	1.098	0.405	0.198	0.109	0.613	0.529	0.715	nan	0.044	0.079	0.386	0.300	0.585	0.688	0.734	0.771	2.649	1.097	0.309	0.433	0.311	0.535	1.470	2.158	0.797	0.517	0.567	0.916	2.486	3.147	0.469	1.137	1.297	0.761	0.240	1.035	0.666	0.158	0.405	0.715	0.125	0.074	0.675	0.161
753	chr1	193144599	193165717	+	0	NA	5' UTR (NM_003783, exon 1 of 2)	5' UTR (NM_003783, exon 1 of 2)	585	NM_003783	8707	Hs.518834	NM_003783	ENSG00000162630	B3GALT2	BETA3GALT2|GLCT2|beta3Gal-T2	beta-1,3-galactosyltransferase 2	protein-coding	1.646	nan	3.657	0.568	0.560	0.361	0.211	0.410	0.191	1.412	0.757	0.516	1.491	0.292	0.132	2.300	1.892	3.520	6.186	2.483	2.340	4.501	1.966	10.776	10.901	3.238	nan	1.096	1.089	3.134	2.829	0.315	0.639	1.125	1.008	1.425	2.486	1.320	0.787	0.026	0.113	0.153	0.095	0.211	0.516	0.074	0.572	0.192	0.593
8077	chr9	18470200	18478184	+	0	NA	5' UTR (NM_052866, exon 1 of 13)	5' UTR (NM_052866, exon 1 of 13)	113	NM_001040272	92949	Hs.741483	NM_052866	ENSG00000178031	ADAMTSL1	ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN	ADAMTS like 1	protein-coding	nan	2.436	0.892	0.549	0.779	0.541	0.594	1.341	0.097	0.295	0.293	2.998	2.717	0.014	0.113	0.163	0.081	0.315	0.279	12.638	9.698	3.197	0.966	0.029	0.069	0.287	0.364	0.703	0.673	1.050	1.005	0.060	0.117	2.823	2.778	0.414	0.752	0.970	0.943	0.036	0.088	0.571	1.227	0.594	2.998	0.074	0.089	0.012	0.216
8293	chr9	131901244	131905948	+	0	NA	intron (NM_001271832, intron 7 of 8)	intron (NM_001271832, intron 7 of 8)	29629	NM_001193397	5524	Hs.400740	NM_021131	ENSG00000119383	PTPA	PP2A|PPP2R4|PR53	protein phosphatase 2 phosphatase activator	protein-coding	nan	3.837	6.242	5.663	10.961	6.100	11.968	6.596	0.751	2.565	1.175	12.456	12.477	1.746	0.089	4.406	6.018	6.742	9.983	14.760	12.600	nan	0.117	1.014	1.173	3.804	4.630	9.067	10.673	8.359	9.075	3.147	5.309	6.687	6.969	2.763	4.254	1.542	0.819	9.517	6.286	2.506	4.912	11.968	12.456	3.457	3.781	4.639	2.311
2171	chr12	119417502	119438334	+	0	NA	intron (NM_194286, intron 1 of 12)	MIRb|SINE|MIR	8618	NM_194286	84530	Hs.744964	NM_194286	ENSG00000139767	SRRM4	KIAA1853|MU-MB-2.76|nSR100	serine/arginine repetitive matrix 4	protein-coding	nan	nan	0.545	0.807	0.701	0.335	0.783	0.047	0.070	0.506	0.305	1.332	2.318	0.033	0.102	0.437	0.453	0.061	0.089	nan	nan	nan	1.396	0.095	0.116	1.699	2.109	nan	nan	2.236	2.714	0.119	0.181	0.184	0.147	1.181	2.328	nan	0.963	0.304	1.072	0.050	0.500	0.783	1.332	0.571	0.559	0.038	0.634
106	chr1	16959311	16997386	+	0	NA	Intergenic	MIRb|SINE|MIR	6279	NR_027504	11209	Hs.349110	NR_027504		MST1P2	MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3	macrophage stimulating 1 pseudogene 2	pseudo	3.994	2.761	nan	2.972	2.249	1.285	2.432	0.696	0.233	1.267	0.761	1.245	4.248	1.625	0.307	3.865	4.393	1.965	2.845	5.110	5.607	3.917	2.084	5.266	nan	3.218	nan	5.069	6.641	nan	3.468	2.589	3.324	1.251	1.316	3.177	5.525	4.158	2.493	4.087	1.823	0.322	0.694	2.432	1.245	1.899	1.066	0.979	2.379
8158	chr9	75281149	75298624	+	0	NA	intron (NM_138691, intron 5 of 23)	intron (NM_138691, intron 5 of 23)	153169	NM_138691	117531	Hs.670211	NM_138691	ENSG00000165091	TMC1	DFNA36|DFNB11|DFNB7	transmembrane channel like 1	protein-coding	nan	nan	nan	0.086	0.633	0.341	0.371	0.090	0.083	0.529	0.468	0.986	0.251	0.087	0.069	0.273	0.258	0.837	nan	1.351	nan	0.106	0.048	0.262	0.169	0.121	0.195	0.393	0.467	0.175	0.095	0.181	0.178	3.431	3.952	0.245	0.428	2.391	1.430	0.070	0.447	0.976	0.036	0.371	0.986	0.017	0.151	0.040	0.079
203	chr1	36164384	36185360	+	0	NA	Intergenic	Intergenic	9918	NM_152374	127703	Hs.112023	NM_152374	ENSG00000142686	C1orf216	-	chromosome 1 open reading frame 216	protein-coding	1.773	nan	2.052	1.962	1.102	0.474	0.898	0.720	0.207	0.651	0.453	3.541	1.939	1.017	0.114	2.212	2.623	0.609	0.431	3.456	2.939	nan	0.514	0.962	1.078	0.544	0.947	5.430	7.669	nan	0.699	1.273	2.150	0.254	0.217	1.185	1.943	1.075	nan	1.897	0.733	0.036	0.237	0.898	3.541	0.251	0.547	0.854	0.396
6114	chr4	190602621	190631292	+	0	NA	Intergenic	LTR12C|LTR|ERV1	17987	NR_135513	105379514	Hs.543309	NR_135513		LOC105379514	-	uncharacterized LOC105379514	ncRNA	1.420	1.780	nan	0.287	1.182	0.438	0.423	0.164	0.166	0.175	0.195	1.047	0.548	0.130	0.351	3.809	3.407	18.316	14.893	0.933	0.966	0.247	0.121	0.609	0.533	0.306	0.492	0.201	0.266	0.780	0.326	3.266	4.468	0.123	0.238	0.331	0.502	0.494	0.702	0.023	0.120	0.027	0.349	0.423	1.047	0.027	0.110	3.419	0.104
4373	chr2	57970739	57992022	+	0	NA	Intergenic	Intergenic	-153406	NM_001288837	7444	Hs.715298	NM_006296	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding	0.709	nan	0.638	0.157	0.555	0.286	0.175	0.109	0.060	0.284	0.312	0.599	0.685	0.041	0.109	2.027	2.092	11.022	8.277	0.905	1.194	1.037	0.375	0.680	0.776	1.814	1.855	0.492	0.459	0.600	0.314	3.516	4.118	0.130	0.128	0.269	0.461	1.074	0.663	0.107	0.230	0.032	0.056	0.175	0.599	0.027	0.154	2.010	0.116
1023	chr10	12619303	12663542	+	0	NA	intron (NM_020397, intron 2 of 9)	LTR89|LTR|ERVL?	20670	NR_039700	100616151		NR_039700	ENSG00000263584	MIR4480	-	microRNA 4480	ncRNA	nan	1.928	0.600	3.190	1.224	0.598	0.720	0.315	0.149	0.958	0.366	1.865	5.336	0.044	0.088	0.420	0.283	0.346	0.507	2.793	2.306	4.755	1.849	0.171	0.153	0.721	1.040	4.373	5.474	0.256	0.171	0.221	0.296	0.668	0.778	0.199	0.367	1.618	0.899	2.489	0.878	0.153	0.065	0.720	1.865	0.116	0.850	0.150	0.089
5705	chr3	178249566	178268085	+	0	NA	intron (NR_126560, intron 5 of 7)	intron (NR_126560, intron 5 of 7)	4739	NM_181361	10242	Hs.478368	NM_005832	ENSG00000197584	KCNMB2	-	potassium calcium-activated channel subfamily M regulatory beta subunit 2	protein-coding	2.283	2.347	1.182	1.160	6.879	3.881	0.546	0.379	0.138	3.963	2.535	1.464	2.173	0.147	0.074	0.390	0.368	0.754	0.706	3.610	3.385	9.095	5.010	0.236	0.306	0.692	0.918	1.761	2.212	0.865	0.533	0.273	0.443	5.267	4.832	0.373	0.636	2.573	1.636	0.060	0.759	1.132	1.111	0.546	1.464	0.168	0.495	0.132	0.148
4702	chr2	213128743	213179268	+	0	NA	intron (NM_005235, intron 1 of 27)	intron (NM_005235, intron 1 of 27)	137079	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA	nan	0.988	nan	0.131	0.248	0.171	0.200	0.095	0.073	0.208	0.194	0.059	0.416	0.251	0.085	0.403	0.288	0.424	0.825	0.210	0.251	0.530	0.266	0.259	0.273	2.559	2.699	0.361	nan	0.585	0.279	0.124	0.253	0.869	1.622	0.497	1.123	0.302	0.234	0.095	0.048	0.250	0.049	0.200	0.059	0.070	0.054	0.039	0.257
86	chr1	11967380	11970588	+	0	NA	Intergenic	Intergenic	17501	NM_138346	90231	Hs.520094	NM_138346	ENSG00000116685	KIAA2013	-	KIAA2013	protein-coding	6.049	5.006	6.422	15.516	5.749	3.609	5.946	4.458	1.408	1.671	1.153	2.237	17.990	7.894	0.363	12.374	12.992	7.607	11.679	23.012	19.166	9.726	11.415	18.769	20.394	7.023	nan	17.364	17.830	14.860	16.096	10.056	11.439	6.569	6.178	13.735	11.881	4.577	2.776	8.526	9.958	0.684	1.751	5.946	2.237	1.613	2.052	3.588	3.587
1158	chr10	79954527	79993931	+	0	NA	Intergenic	Intergenic	-34153	NR_038985	100132987	Hs.55047	NR_038985	ENSG00000230417	LINC00856	-	long intergenic non-protein coding RNA 856	ncRNA	0.782	nan	0.804	0.279	1.007	0.416	0.260	0.105	0.062	0.263	0.142	2.258	1.383	0.040	0.055	1.644	2.073	0.882	0.691	1.133	1.537	3.870	2.229	0.523	0.489	0.398	0.669	0.871	nan	0.283	0.159	0.782	1.245	0.404	0.307	0.578	nan	0.861	0.571	0.652	0.118	0.067	0.135	0.260	2.258	0.091	0.039	0.807	0.494
2170	chr12	119036045	119064320	+	0	NA	Intergenic	Intergenic	149302	NR_134999	105370014	Hs.550870	NR_134998	ENSG00000256750	LOC105370014	-	uncharacterized LOC105370014	ncRNA	nan	nan	0.568	0.059	0.249	0.136	0.370	0.081	0.082	0.056	0.112	0.055	0.345	0.042	0.130	0.354	0.253	0.145	0.140	nan	nan	nan	1.670	0.119	0.148	0.167	0.251	nan	nan	0.511	0.376	0.078	0.157	0.130	0.162	0.253	0.513	nan	0.935	0.018	0.101	0.016	0.031	0.370	0.055	0.153	0.086	0.028	0.201
2335	chr13	71292711	71308319	+	0	NA	Intergenic	L1MC4a|LINE|L1	-288758	NR_047699	100885781	Hs.372660	NR_047699	ENSG00000226846	LINC00348	-	long intergenic non-protein coding RNA 348	ncRNA	nan	1.026	0.812	0.141	0.200	0.133	0.140	0.053	0.062	0.122	0.137	0.057	0.291	0.021	0.129	0.549	0.346	0.581	0.557	0.405	0.693	nan	0.662	0.133	0.099	3.727	4.426	0.227	0.222	nan	0.455	0.208	0.320	0.605	0.437	0.500	nan	0.173	0.201	0.084	0.068	0.224	0.166	0.140	0.057	0.105	0.039	0.057	0.295
6516	chr5	153451585	153500404	+	0	NA	Intergenic	L3|LINE|CR1	57475	NM_001135037	4238	Hs.432818	NM_005927	ENSG00000037749	MFAP3	-	microfibrillar associated protein 3	protein-coding	0.667	nan	1.071	0.295	0.404	0.188	0.331	0.132	0.053	0.102	0.101	0.529	2.232	0.062	0.119	0.203	0.122	0.186	0.232	0.424	0.508	1.691	0.586	0.069	0.071	0.562	0.780	0.546	0.809	0.504	0.297	0.248	0.342	0.200	0.656	0.230	0.523	0.749	0.538	1.835	0.361	0.039	0.080	0.331	0.529	0.119	0.059	0.067	0.054
6560	chr5	175222886	175225945	+	0	NA	intron (NM_006650, intron 1 of 4)	CpG	805	NM_006650	10814	Hs.193235	NM_006650	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding	5.428	4.691	0.829	1.838	3.702	2.502	3.926	0.097		4.200	2.101	10.199	24.073		0.042	1.608	5.026	0.121	nan	13.042	10.403	8.421	3.348	0.030	0.094	7.062	9.030	7.775	11.746	10.976	13.277	2.250	5.233	11.421	10.095	5.508	5.945	1.992	1.058	4.269	10.430	4.243	6.437	3.926	10.199	2.323	6.466	2.115	1.246
6304	chr5	69676693	69705535	+	0	NA	intron (NR_027386, intron 3 of 5).2	L1ME3A|LINE|L1	-20083	NR_033417	653238	Hs.607501	NM_001098729		GTF2H2B	-	general transcription factor IIH subunit 2B (pseudogene)	pseudo	1.151	2.608	0.891	1.189	0.807	0.427	0.746	0.251	0.072	2.704	1.869	0.754	2.635	0.479	0.145	1.244	1.239	1.241	1.716	2.023	1.886	4.080	2.379	1.475	1.257	3.188	3.322	1.985	2.835	1.351	1.199	0.237	0.652	5.507	7.733	0.453	0.533	4.920	2.520	0.324	1.190	3.833	0.823	0.746	0.754	0.604	0.631	0.415	0.227
8296	chr9	132139490	132157452	+	0	NA	Intergenic	Intergenic	49269	NR_120686	100506119	Hs.624047	NR_120685	ENSG00000233901	LINC01503	-	long intergenic non-protein coding RNA 1503	ncRNA	nan	1.886	1.724	1.978	1.207	0.659	1.156	0.294	0.199	0.223	0.074	4.319	3.516	0.416	0.080	1.306	1.600	1.043	2.197	4.033	4.223	nan	0.057	1.643	1.669	0.235	0.365	3.934	5.891	1.200	0.954	1.305	1.792	0.183	0.234	0.392	0.504	0.359	0.361	4.505	0.769	0.063	0.573	1.156	4.319	0.254	0.080	1.210	0.118
1709	chr11	122750454	122773777	+	0	NA	intron (NM_024806, intron 2 of 8)	intron (NM_024806, intron 2 of 8)	8879	NM_199124	79864	Hs.164705	NM_024806	ENSG00000109944	C11orf63	-	chromosome 11 open reading frame 63	protein-coding	0.677	1.385	0.609	3.035	0.768	0.378	1.077	0.045	0.098	2.825	1.577	1.660	1.819	0.447	0.150	0.447	0.393	0.612	0.734	2.397	3.096	0.213	0.144	0.640	0.737	0.212	0.355	0.140	0.151	0.571	0.377	0.902	1.209	4.937	3.553	0.107	nan	2.157	1.245	3.130	0.905	1.324	0.024	1.077	1.660	0.079	0.017	0.301	0.032
4896	chr20	24442012	24452733	+	0	NA	Intergenic	Intergenic	-2463	NM_024893	79953	Hs.124638	NM_024893	ENSG00000101463	SYNDIG1	C20orf39|DSPC2|IFITMD5|TMEM90B	synapse differentiation inducing 1	protein-coding	0.669	1.334	nan	0.049	0.136	0.063	0.109	0.078	0.120	0.104	0.052	0.056	5.737	0.053	0.069	3.135	6.918	0.997	0.695	0.198	0.303	0.120	0.070	0.075	0.139	1.919	2.385	0.182	0.254	3.862	4.702	1.140	1.979	0.382	0.529	0.239	0.552	0.993	0.830	0.487	0.099	0.204	0.028	0.109	0.056	3.097	0.104	0.802	0.895
339	chr1	61582202	61614305	+	0	NA	intron (NM_001145511, intron 2 of 10)	intron (NM_001145511, intron 2 of 10)	50273	NM_001134673	4774	Hs.740757	NM_005595	ENSG00000162599	NFIA	CTF|NF-I/A|NF1-A|NFI-A|NFI-L	nuclear factor I A	protein-coding	1.162	1.461	nan	0.419	1.369	0.757	0.342	1.784	0.166	0.884	0.459	0.186	0.950	0.105	0.128	0.568	0.975	0.692	1.121	0.507	0.563	0.133	0.077	0.300	0.285	nan	nan	3.019	nan	0.703	0.516	0.275	0.438	1.391	2.354	0.206	0.475	2.351	1.222	2.136	0.643	0.330	0.362	0.342	0.186	0.136	0.958	0.145	0.073
7949	chr8	136194070	136204167	+	0	NA	Intergenic	Intergenic	-47256	NR_120396	286094	Hs.440978	NR_026706	ENSG00000254083	LINC01591	-	long intergenic non-protein coding RNA 1591	ncRNA	nan	1.582	1.261	0.141	0.962	0.527	0.533	0.052	0.096	0.297	0.169	0.426	1.124	0.043	0.077	0.164	0.133	0.132	0.246	0.459	0.668	11.965	3.625	nan	0.397	0.100	0.224	1.161	0.858	0.323	0.205	0.209	0.224	1.212	1.891	0.324	0.659	0.906	0.603	0.055	0.186	0.245	0.087	0.533	0.426	0.108	0.041	0.049	0.109
6355	chr5	88075136	88084518	+	0	NA	intron (NM_001193347, intron 4 of 11)	intron (NM_001193347, intron 4 of 11)	39917	NM_001193349	4208	Hs.649965	NM_002397	ENSG00000081189	MEF2C	C5DELq14.3|DEL5q14.3	myocyte enhancer factor 2C	protein-coding	0.687	1.435	0.595	0.169	0.203	0.240	0.327	1.550	0.051	0.200	0.178	0.102	1.040	0.569	0.115	0.530	0.635	7.076	10.710	0.459	0.339	0.531	0.256	0.266	0.334	1.912	2.059	0.414	0.436	0.310	0.148	1.016	2.092	0.126	0.267	0.243	nan	0.416	0.308	0.077	0.370	0.010	0.009	0.327	0.102	0.031	0.076	2.322	0.130
8124	chr9	36934716	36941941	+	0	NA	intron (NR_104000, intron 6 of 9)	intron (NR_104000, intron 6 of 9)	-44800	NR_039687	100616456		NR_039687	ENSG00000265368	MIR4476	mir-4476	microRNA 4476	ncRNA	1.172	nan	3.009	0.072	1.041	0.553	0.442	0.112	0.067	1.532	0.811	1.060	0.427	0.076	0.120	0.192	0.317	0.192	0.324	0.862	1.391	3.135	0.960	0.145	0.189	0.641	1.061	0.282	0.666	0.435	0.278	0.291	0.510	7.710	8.172	0.580	1.972	0.910	0.756	0.046	0.171	3.459	0.177	0.442	1.060	0.034	0.014	0.111	0.512
268	chr1	43810993	43837295	+	0	NA	promoter-TSS (NM_001255)	promoter-TSS (NM_001255)	-482	NM_001255	991	Hs.524947	NM_001255	ENSG00000117399	CDC20	CDC20A|bA276H19.3|p55CDC	cell division cycle 20	protein-coding	nan	1.745	nan	1.671	1.723	0.926	1.268	1.019	0.282	1.263	0.735	3.018	4.145	1.886	0.122	1.807	2.513	2.197	2.951	4.444	4.050	2.450	0.937	2.957	3.135	1.734	nan	nan	11.154	1.608	1.400	1.890	nan	0.986	0.898	1.689	3.115	1.661	0.849	1.940	1.434	0.249	0.669	1.268	3.018	0.517	1.095	1.315	0.936
7281	chr7	50595619	50630985	+	0	NA	intron (NM_001082971, intron 1 of 14)	AluSq2|SINE|Alu	13845	NR_033845	100129427	Hs.680434	NR_033845	ENSG00000226122	DDC-AS1	-	DDC antisense RNA 1	ncRNA	nan	2.324	1.298	3.088	4.441	2.277	2.617	0.068	0.132	3.177	1.744	4.038	3.281	0.058	0.136	0.483	0.277	0.269	0.506	4.611	4.729	6.592	2.751	0.098	0.077	0.335	0.581	4.594	4.658	1.116	1.165	0.161	0.229	2.542	2.658	0.831	1.861	3.148	1.580	0.560	1.402	0.942	0.400	2.617	4.038	0.414	3.900	0.062	0.421
3677	chr18	19584138	19589021	+	0	NA	Intergenic	Intergenic	162350	NR_102763	100128893	Hs.514745	NR_102763	ENSG00000266010	GATA6-AS1	BM742401|locus5689	GATA6 antisense RNA 1 (head to head)	ncRNA	0.709	0.614	0.802	0.198	0.227	0.033	0.373	0.092	0.163	0.121	0.078	0.073	0.354	0.134	0.164	0.402	0.231	0.267	0.547	0.302	0.513	14.363	4.816	0.162	0.161	0.141	0.244	0.055	0.157	0.371	0.161	0.141	0.186	0.124	0.164	0.138	0.270	0.255	0.422	0.034	0.050	0.059	0.030	0.373	0.073	0.031		0.041	0.076
2872	chr15	48085228	48115581	+	0	NA	intron (NR_120336, intron 3 of 4)	AluSg|SINE|Alu	38029	NR_120336	101928442	Hs.242804	NR_120336	ENSG00000259572	LINC01491	-	long intergenic non-protein coding RNA 1491	ncRNA	0.794	0.809	nan	0.198	0.346	0.201	0.201	0.121	0.131	0.114	0.143	0.227	4.246	0.021	0.064	0.276	0.149	0.187	0.248	0.334	0.420	0.339	0.158	0.115	0.097	0.667	nan	0.621	0.506	0.769	0.466	0.050	0.166	0.297	0.372	0.351	0.848	0.856	0.736	0.140	0.513	0.066	0.068	0.201	0.227	0.120	0.197	0.039	0.299
596	chr1	156708757	156739259	+	0	NA	Intergenic	Intergenic	-1768	NM_001319186	3068	Hs.743948	NM_004494	ENSG00000143321	HDGF	HMG1L2	hepatoma-derived growth factor	protein-coding	nan	nan	4.423	2.572	3.921	2.113	4.672	2.966	0.264	2.770	1.248	3.469	4.933	4.425	0.170	3.556	3.896	4.394	6.551	6.638	nan	4.527	1.957	3.246	3.216	3.296	4.495	4.391	5.842	4.754	4.529	3.888	7.297	3.848	3.706	5.023	7.766	2.393	1.198	2.633	5.700	1.008	2.535	4.672	3.469	1.082	2.595	3.101	2.373
8068	chr9	15464390	15472540	+	0	NA	intron (NM_033222, intron 14 of 15)	Tigger4|DNA|TcMar-Tigger	41822	NM_021144	11168	Hs.658434	NM_021144	ENSG00000164985	PSIP1	DFS70|LEDGF|PAIP|PSIP2|p52|p75	PC4 and SFRS1 interacting protein 1	protein-coding	nan	nan	0.999	0.511	1.112	0.590	0.251	0.195	0.039	1.252	1.235	1.166	0.514	0.106	0.061	0.250	0.249	0.487	0.771	0.720	1.061	1.333	0.665	0.226	0.311	1.192	1.350	1.776	1.430	0.703	0.330	0.361	0.666	2.749	4.567	0.319	0.744	5.405	1.966	0.240	0.196	0.961	0.160	0.251	1.166	0.036	0.262	0.118	0.180
1297	chr11	10309585	10347143	+	0	NA	3' UTR (NM_001124, exon 4 of 4)	3' UTR (NM_001124, exon 4 of 4)	-1496	NR_103765	100130460	Hs.501890	NR_103765		CAND1.11	-	uncharacterized LOC100130460	ncRNA	1.102	nan	1.308	0.895	1.221	0.550	0.781	1.352	0.138	0.654	0.349	1.848	2.098	4.013	0.122	nan	1.482	2.131	3.299	2.129	1.915	2.967	0.753	2.208	2.300	1.029	nan	0.956	0.973	1.092	1.130	0.808	1.610	1.055	1.259	0.464	1.036	1.416	nan	0.400	0.267	0.205	0.266	0.781	1.848	0.112	0.366	0.571	0.304
5776	chr3	191375633	191379218	+	0	NA	Intergenic	HERV17-int|LTR|ERV1	198473	NM_001083308	152138	Hs.690618	NM_001083308		PYDC2	POP2|cPOP2	pyrin domain containing 2	protein-coding	nan	0.700	0.763	0.245	0.197	0.180	0.071	0.567	0.402	0.020	0.139	0.033	nan		0.081	0.270	0.090	1.025	0.699	0.249	0.202	18.932	11.321	0.299	0.431	1.338	1.688	0.184	0.246	0.556	0.336	0.110	0.221	0.079	0.072	0.291	0.543	0.363	0.526	0.047	0.125	0.052	0.043	0.071	0.033	0.054			0.035
2090	chr12	96016249	96048384	+	0	NA	Intergenic	AluSz|SINE|Alu	-10715	NR_077225	100132594	Hs.676211	NR_077225	ENSG00000257150	PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo	0.763	0.900	0.663	0.124	0.294	0.129	0.271	3.189	0.479	0.269	0.247	0.473	nan	0.084	0.137	0.252	0.227	1.689	5.994	0.636	0.731	0.353	0.125	0.315	0.309	0.389	nan	0.354	nan	0.383	0.176	0.137	0.200	0.131	0.209	0.383	0.690	0.949	0.849	0.059	0.094	0.033	0.035	0.271	0.473	0.021	0.238	0.028	0.211
3495	chr17	61509239	61531086	+	0	NA	intron (NM_001915, intron 1 of 5)	intron (NM_001915, intron 1 of 5)	-1955	NM_001017917	1534	Hs.355264	NM_001915	ENSG00000008283	CYB561	CYB561A1|FRRS2	cytochrome b561	protein-coding	1.970	nan	2.689	2.456	1.944	1.042	0.660	0.898	0.169	1.279	0.618	2.016	2.577	0.332	0.098	3.386	3.435	1.246	2.163	1.514	1.400	3.863	1.966	2.924	3.010	0.955	nan	5.267	7.344	1.243	1.135	1.388	1.671	1.612	1.654	1.154	2.735	1.346	0.897	1.829	2.092	0.265	1.010	0.660	2.016	0.925	1.217	0.538	0.440
7574	chr8	1770887	1817308	+	0	NA	intron (NM_001308153, intron 3 of 29)	intron (NM_001308153, intron 3 of 29)	21955	NM_014629	9639	Hs.98594	NM_014629	ENSG00000104728	ARHGEF10	GEF10|SNCV	Rho guanine nucleotide exchange factor 10	protein-coding	0.699	0.760	0.572	0.862	0.735	0.407	0.399	0.272	0.062	0.417	0.346	7.502	0.149	0.486	0.124	0.536	0.801	0.634	0.834	3.356	3.233	2.668	1.062	0.587	0.602	0.198	0.324	0.338	0.473	nan	0.423	0.312	0.442	0.638	0.568	0.315	0.511	0.819	0.622	0.336	0.437	0.102	0.015	0.399	7.502	0.065	0.201	0.121	0.162
6515	chr5	152491611	152528617	+	0	NA	Intergenic	LTR9|LTR|ERV1	-158205	NR_109877	101927134	Hs.531423	NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA	0.599	nan	0.783	1.087	0.734	0.393	0.369	0.074	0.061	1.114	0.866	3.189	1.345	0.044	0.133	0.164	0.075	0.192	0.203	1.145	1.648	3.949	1.661	0.082	0.070	0.784	0.866	1.619	1.044	0.372	0.201	0.120	0.191	1.181	1.095	0.132	0.244	1.585	0.752	0.267	1.062	0.347	0.106	0.369	3.189	0.074	0.257	0.024	0.057
6237	chr5	36870905	36881467	+	0	NA	promoter-TSS (NM_015384)	promoter-TSS (NM_015384)	610	NR_046262	646719	Hs.355684	NR_046262		NIPBL-AS1	NIPBL-AS	NIPBL antisense RNA 1 (head to head)	ncRNA	2.995	3.251	nan	6.841	2.604	1.220	2.657	5.041	0.365	3.293	2.084	3.755	8.793	2.415	0.129	4.060	4.384	3.850	5.416	7.654	7.354	3.907	2.088	9.323	9.491	5.391	5.974	5.107	7.296	12.846	10.306	5.726	10.701	3.013	3.663	5.539	5.561	2.671	1.353	1.165	3.379	0.912	2.098	2.657	3.755	1.149	2.734	3.731	2.334
5572	chr3	139737822	139756129	+	0	NA	intron (NM_022131, intron 1 of 16)	intron (NM_022131, intron 1 of 16)	92948	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding	1.374	nan	nan	0.134	0.566	0.315	0.316	0.164	0.218	0.232	0.221	0.111	0.550	0.024	0.064	0.300	0.203	0.449	0.392	0.498	0.455	2.123	0.692	0.179	0.214	2.595	3.740	0.220	0.249	nan	1.654	0.272	0.450	0.903	0.920	0.549	1.034	0.583	0.603	1.255	0.331	0.349	0.195	0.316	0.111	0.425	0.099	0.092	0.311
7477	chr7	129609405	129625490	+	0	NA	Intergenic	Intergenic	-24647	NM_003344	7328	Hs.643548	NM_003344	ENSG00000186591	UBE2H	E2-20K|GID3|UBC8|UBCH|UBCH2	ubiquitin conjugating enzyme E2 H	protein-coding	0.877	0.602	0.871	0.198	0.393	0.158	0.327	0.181	0.266	0.262	0.184	0.285	0.328	0.146	0.216	0.394	0.380	0.325	0.915	0.421	0.392	4.796	0.991	0.340	0.306	0.175	0.491	0.607	0.691	0.361	0.180	0.376	0.542	0.614	0.814	0.263	0.539	0.921	0.741	0.062	0.172	0.129	0.110	0.327	0.285	0.084	0.093	0.133	0.092
7486	chr7	130790111	130797953	+	0	NA	promoter-TSS (NM_001145354)	promoter-TSS (NM_001145354)	643	NR_109850	378805	Hs.150556	NM_001085379	ENSG00000231721	LINC-PINT	LincRNA-Pint|MKLN1-AS1|PINT	long intergenic non-protein coding RNA, p53 induced transcript	ncRNA	nan	nan	nan	5.030	2.387	1.424	2.160	4.262	0.412	1.982	0.877	3.002	5.833	1.481	0.160	5.280	8.776	5.934	7.880	3.599	2.916	nan	4.015	6.442	6.616	0.462	nan	5.157	9.743	nan	3.123	2.140	3.632	5.372	5.881	5.347	5.678	4.926	nan	0.794	6.465	0.666	0.734	2.160	3.002	1.240	5.100	2.128	0.939
494	chr1	145199413	145255386	+	0	NA	intron (NM_203458, intron 1 of 4)	AT_rich|Low_complexity|Low_complexity	18286	NM_203458	388677	Hs.655156	NM_203458	ENSG00000264343	NOTCH2NL	N2N	notch 2 N-terminal like	protein-coding	2.926	nan	4.445	0.654	0.597	0.322	0.377	2.258	0.493	0.497	0.423	0.304	4.570	0.957	0.306	1.705	1.372	2.652	4.904	1.080	1.237	0.376	0.225	1.207	1.159	1.040	1.525	2.904	2.987	0.767	0.344	2.049	3.228	0.475	0.567	1.705	4.891	0.994	0.985	0.237	0.460	0.127	0.239	0.377	0.304	0.044	0.466	1.287	0.745
3333	chr17	26821587	26841914	+	0	NA	Intergenic	MIRb|SINE|MIR	-19209	NM_003593	8456	Hs.58611	NM_003593	ENSG00000109101	FOXN1	FKHL20|RONU|WHN	forkhead box N1	protein-coding	nan	nan	nan	0.151	0.348	0.213	0.176	0.095	0.040	0.077	0.066	0.153	2.319	0.069	0.094	0.743	0.771	0.283	0.511	0.517	0.484	1.055	0.295	0.437	0.428	0.314	0.562	1.390	1.246	7.131	7.448	0.822	0.918	0.412	0.294	1.357	nan	1.481	0.889	0.117	0.357	0.042	0.063	0.176	0.153	1.959	0.059	0.183	1.872
1956	chr12	54365968	54433269	+	0	NA	Intergenic	CpG	-3272	NM_022658	3224	Hs.664500	NM_022658	ENSG00000037965	HOXC8	HOX3|HOX3A	homeobox C8	protein-coding	nan	1.432	1.299	0.085	0.347	0.189	0.186	1.100	0.128	0.221	0.157	0.263	1.696	2.075	0.069	nan	13.381	5.793	8.152	0.517	nan	0.250	0.129	4.553	4.767	1.461	nan	1.110	nan	0.997	0.737	7.441	14.167	1.716	1.790	1.463	2.885	0.549	0.489	1.240	4.574	0.635	0.016	0.186	0.263	0.457	0.673	6.895	0.881
2778	chr14	103565260	103595516	+	0	NA	Intergenic	Intergenic	8858	NR_138038	105370683	Hs.252904	NR_138038		LINC00677	C14orf74	long intergenic non-protein coding RNA 677	ncRNA	1.652	1.181	1.828	0.740	1.947	1.023	0.781	1.759	0.326	0.192	0.165	3.254	1.375	0.219	0.080	2.256	3.586	1.405	1.898	2.982	3.086	0.724	0.214	1.440	1.352	0.167	0.354	3.357	3.572	2.017	2.013	1.682	2.573	0.284	0.243	0.379	0.777	1.313	0.881	1.215	0.600	0.035	0.097	0.781	3.254	0.225	0.760	1.560	0.082
2235	chr13	22504106	22513425	+	0	NA	Intergenic	Intergenic	-56466	NR_047040	100874182	Hs.148951	NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA	0.612	1.004	0.813	0.302	1.145	0.602	0.378	0.103	0.064	0.433	0.254	3.043	1.136	0.070	0.051	0.746	1.273	0.327	nan	1.408	1.391	0.063	0.051	0.151	0.125	0.193	0.427	0.649	0.721	0.298	0.179	0.428	0.630	0.399	0.331	0.120	0.202	3.913	2.088	4.037	0.162	0.082	0.059	0.378	3.043	0.021	0.130	0.206	0.053
238	chr1	39972267	40006411	+	0	NA	non-coding (NR_144355, exon 11 of 12)	non-coding (NR_144355, exon 11 of 12)	8801	NR_132962	192217	Hs.472491	NR_132962	ENSG00000237624	OXCT2P1	OXCT2P	3-oxoacid CoA-transferase 2 pseudogene 1	pseudo	9.756	nan	0.801	1.034	0.242	0.152	0.251	0.161	0.118	0.365	0.249	0.743	0.901	0.115	0.084	0.293	0.279	0.270	0.414	0.888	0.925	nan	0.181	0.444	0.478	0.388	0.786	5.110	6.609	nan	0.274	0.634	0.692	0.142	0.130	0.285	0.538	3.901	nan	0.101	0.133	0.039	0.095	0.251	0.743	0.074	0.173	0.153	0.105
873	chr1	218646132	218675071	+	0	NA	intron (NR_031644, intron 2 of 6)	intron (NR_031644, intron 2 of 6)	44633	NR_125715	103611157	Hs.133379	NR_125715	ENSG00000281453	TGFB2-OT1	-	TGFB2 overlapping transcript 1	ncRNA	1.237	1.146	1.134	0.495	0.732	0.350	0.990	1.392	0.245	0.260	0.203	0.087	nan	0.127	0.105	0.451	0.366	2.097	7.870	0.587	0.718	nan	0.652	0.429	0.431	0.187	nan	0.451	0.411	0.395	0.203	0.120	0.146	0.829	1.155	0.293	0.541	0.874	0.686	0.050	0.037	0.234	0.096	0.990	0.087	0.040	0.127	0.031	0.129
448	chr1	111292155	111307570	+	0	NA	Intergenic	Intergenic	-82207	NM_002232	3738	Hs.169948	NM_002232	ENSG00000177272	KCNA3	HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3	potassium voltage-gated channel subfamily A member 3	protein-coding	nan	0.751	0.823	0.438	0.179	0.104	0.360	0.081	0.073	0.212	0.108	0.045	0.569	0.061	0.126	0.388	0.469	0.087	0.169	0.600	nan	0.199	0.091	0.116	0.108	0.921	1.120	1.275	1.210	1.148	1.042	0.251	0.280	0.126	0.251	0.384	1.062	2.594	1.210	0.018	0.195	0.066	0.129	0.360	0.045	0.208	0.138	0.097	0.097
2631	chr14	60546315	60561537	+	0	NA	Intergenic	Intergenic	-4703	NM_001330177	64430	Hs.509499	NM_022495	ENSG00000126773	PCNX4	C14orf135|FBP2|PCNXL4	pecanex homolog 4 (Drosophila)	protein-coding	nan	nan	1.647	2.097	2.180	1.317	2.868	2.480	0.128	0.496	0.334	1.370	3.715	1.305	0.124	1.770	1.678	1.678	2.728	3.372	2.968	1.669	1.192	nan	6.913	2.249	2.783	2.005	nan	5.769	5.297	1.875	2.693	4.434	4.913	2.219	3.005	1.574	0.975	1.839	2.336	1.057	1.291	2.868	1.370	0.414	0.937	1.171	0.737
7571	chr7_gl000195_random	64710	95803	+	0	NA	intron (NM_001347682, intron 1 of 3)	LTR12C|LTR|ERV1	6463	NM_001322047	102724843	Hs.743984	NM_001322047		LOC102724843	-	uncharacterized LOC102724843	protein-coding	nan	nan	nan	3.198	1.660	0.843	1.239	3.186	0.603	1.276	0.932	1.609	2.336	0.794	0.311	3.780	3.112	2.965	4.756	2.904	nan	3.394	1.280	4.329	4.226	3.638	4.772	1.035	1.398	6.240	4.333	2.527	3.608	1.461	1.894	3.055	4.005	2.832	nan	0.748	1.032	0.350	1.470	1.239	1.609	0.643	1.012	1.617	1.099
3297	chr17	16928055	16949292	+	0	NA	Intergenic	L1ME4a|LINE|L1	-7401	NM_201274	23164	Hs.462341	NM_015134	ENSG00000133030	MPRIP	M-RIP|MRIP|RHOIP3|RIP3|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	1.602	1.194	2.117	0.322	0.697	0.422	0.585	0.447	0.068	0.514	0.226	0.797	1.453	0.106	0.035	1.683	2.508	1.173	nan	2.585	2.701	2.803	0.594	0.673	0.698	0.710	1.178	1.559	1.878	nan	1.923	0.637	1.222	0.461	0.460	2.003	4.578	0.872	0.561	0.315	0.802	0.108	0.309	0.585	0.797	0.223	2.075	0.394	1.576
4647	chr2	191390208	191401903	+	0	NA	intron (NR_136298, intron 1 of 8)	intron (NR_136298, intron 1 of 8)	3413	NM_001142645	100131211	Hs.659824	NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding	2.268	nan	1.840	1.609	2.273	0.995	1.382	1.494	0.153	0.670	0.472	2.751	5.566	1.328	0.096	3.641	5.431	0.945	1.613	2.600	2.573	2.093	0.932	8.280	8.905	1.709	2.463	3.002	4.646	1.610	1.467	3.500	6.327	1.197	1.232	1.330	1.568	1.087	0.768	1.969	1.110	0.252	0.913	1.382	2.751	0.324	0.944	4.641	0.768
713	chr1	183599759	183610695	+	0	NA	promoter-TSS (NM_015149)	promoter-TSS (NM_015149)	45	NM_001297670	23179	Hs.497148	NM_015149	ENSG00000143344	RGL1	RGL	ral guanine nucleotide dissociation stimulator like 1	protein-coding	nan	nan	2.041	1.207	1.325	0.573	1.884	2.547	0.321	1.572	1.233	0.963	3.386	0.964	0.139	3.152	4.292	4.933	4.792	2.704	nan	2.436	0.845	nan	5.461	4.466	5.554	1.314	1.673	3.423	2.964	2.740	5.617	2.933	3.299	1.496	nan	1.530	0.667	0.689	1.745	0.913	0.740	1.884	0.963	0.374	0.882	2.393	0.651
7746	chr8	73634347	73649555	+	0	NA	intron (NM_004770, intron 2 of 2)	AluSp|SINE|Alu	-2329	NR_110656	101926908	Hs.680588	NR_110656	ENSG00000253726	LOC101926908	-	uncharacterized LOC101926908	ncRNA	1.443	0.908	1.334	0.639	1.079	0.390	0.513	0.133	0.074	0.288	0.254	1.389	0.583	0.035	0.078	0.595	0.473	3.480	1.820	2.729	2.302	2.002	0.600	1.349	1.282	1.053	1.431	0.891	0.809	0.418	0.196	1.566	2.554	2.586	4.168	0.405	0.889	1.749	1.112	0.080	1.777	0.783	0.154	0.513	1.389	0.022	0.267	1.520	0.186
3557	chr17	73868857	73875411	+	0	NA	exon (NM_033452, exon 4 of 6)	exon (NM_033452, exon 4 of 6)	2522	NM_033452	91107	Hs.293660	NM_033452	ENSG00000132481	TRIM47	GOA|RNF100	tripartite motif containing 47	protein-coding	4.724	5.276	1.478	4.489	3.817	2.059	1.487	3.692	0.647	4.709	1.694	1.249	3.639	1.266	0.131	2.526	4.462	0.495	1.154	0.801	0.748	2.970	1.052	4.595	4.527	nan	1.536	6.239	8.782	1.194	0.995	0.616	0.713	3.545	2.963	0.641	1.001	nan	1.568	3.329	0.027	0.555	0.084	1.487	1.249	0.771	5.266	0.181	0.191
2839	chr15	33418233	33448012	+	0	NA	intron (NM_001277313, intron 4 of 20)	L1M5|LINE|L1	53812	NM_001277314	342184	Hs.657649	NM_198500	ENSG00000248905	FMN1	FMN|LD	formin 1	protein-coding	0.794	nan	nan	0.201	0.217	0.108	0.691	0.521	0.118	0.115	0.158	0.025	0.482	0.029	0.090	0.365	0.242	0.253	0.709	0.336	0.391	0.095	0.050	0.162	0.125	0.160	0.261	1.427	1.361	0.566	0.180	1.398	2.361	0.514	0.727	0.285	0.515	0.890	0.612	0.349	1.803	0.121	0.016	0.691	0.025	0.100	0.461	1.483	0.050
1679	chr11	117440141	117473475	+	0	NA	intron (NM_020693, intron 3 of 32)	MIR3|SINE|MIR	211168	NM_020693	57453	Hs.659513	NM_020693	ENSG00000177103	DSCAML1	DSCAM2	DS cell adhesion molecule like 1	protein-coding	0.663	0.661	0.535	0.131	0.456	0.216	0.199	0.031	0.037	0.253	0.238	0.441	0.507	0.046	0.114	1.790	nan	0.144	0.185	0.481	0.617	1.638	0.582	0.136	0.185	0.493	nan	1.059	0.847	0.801	0.685	2.481	3.256	0.335	0.311	0.506	0.960	0.932	0.679	2.240	0.226	0.065	0.152	0.199	0.441	0.076	0.036	2.133	0.624
4215	chr2	11236865	11275857	+	0	NA	intron (NR_040080, intron 6 of 8)	AluSz|SINE|Alu	15941	NR_040080	285150	Hs.329841	NM_182586	ENSG00000145063	FLJ33534	-	uncharacterized LOC285150	ncRNA	0.889	0.583	0.943	0.950	1.314	0.675	0.191	0.099	0.098	0.505	0.323	2.253	1.598	0.147	0.121	0.278	0.280	0.332	0.514	1.868	2.043	1.880	0.583	0.158	0.161	0.296	0.666	4.222	nan	0.758	0.629	0.262	0.366	0.106	0.109	0.549	nan	1.292	0.874	1.472	0.434	0.020	0.088	0.191	2.253	0.122	0.463	0.083	0.131
6845	chr6	72111032	72132079	+	0	NA	non-coding (NR_026807, exon 4 of 4)	non-coding (NR_026807, exon 4 of 4)	-8231	NR_029504	407029		NR_029504	ENSG00000207827	MIR30A	MIRN30A|mir-30a	microRNA 30a	ncRNA	nan	nan	0.703	0.270	0.144	0.069	0.138	2.239	0.292	0.214	0.224	0.079	0.878	4.814	0.167	1.200	1.199	0.988	2.105	0.210	0.248	0.148	0.140	3.845	3.912	0.783	1.031	0.443	0.532	0.618	0.447	0.250	0.277	0.086	0.157	0.173	0.361	0.651	0.520	0.711	0.090	0.022	0.365	0.138	0.079	0.047	0.058	0.047	0.059
1262	chr10	133580689	133605093	+	0	NA	Intergenic	Intergenic	29644	NR_038365	399827	Hs.523353	NM_001001677	ENSG00000189275	LINC01164	-	long intergenic non-protein coding RNA 1164	ncRNA	0.316	0.464	1.101	0.028	0.227	0.145	0.246	0.046	0.046	0.046	0.026	0.296	0.362	0.040	0.069	3.370	5.105	0.118	0.123	0.475	0.402	0.112	0.065	0.041	0.059	0.076	0.100	1.059	1.580	0.143	0.197	0.836	1.192	0.063	0.079	0.058	0.081	0.164	0.236	0.291	0.252	0.012	0.023	0.246	0.296	0.135	0.029	0.703	0.020
1290	chr11	6460102	6481933	+	0	NA	intron (NM_006458, intron 11 of 12)	L2b|LINE|L2	-8763	NM_000613	3263	Hs.426485	NM_000613	ENSG00000110169	HPX	HX	hemopexin	protein-coding	0.591	0.741	0.860	0.998	0.495	0.312	0.221	0.127	0.118	0.165	0.132	4.873	0.411	0.049	0.056	0.572	0.536	0.368	0.409	4.983	6.367	1.163	0.261	0.522	0.568	0.330	0.537	1.862	1.477	0.363	0.168	0.373	0.368	0.163	0.168	0.275	0.714	0.941	0.589	1.149	2.131	0.030	0.127	0.221	4.873	0.013	0.037	0.077	0.160
7024	chr6	146053862	146058327	+	0	NA	promoter-TSS (NR_038246)	promoter-TSS (NR_038246)	89	NR_038246	100507557	Hs.124537	NR_038244	ENSG00000235652	LOC100507557	-	uncharacterized LOC100507557	ncRNA	9.868	4.251	5.019	6.931	5.003	2.534	5.531	3.034	0.144	2.315	0.983	5.355	8.184	4.807	0.137	7.360	8.929	9.287	13.161	10.036	10.110	13.646	8.100	13.659	13.086	3.291	3.766	6.008	9.358	13.814	15.181	3.989	6.837	10.832	9.701	9.780	8.305	3.730	2.141	5.889	4.586	1.902	2.267	5.531	5.355	0.961	3.481	1.638	3.477
1527	chr11	75293563	75307536	+	0	NA	intron (NM_033063, intron 3 of 3)	MIRc|SINE|MIR	27448	NM_001235	871	Hs.596449	NM_001235	ENSG00000149257	SERPINH1	AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46	serpin family H member 1	protein-coding	nan	2.286	1.513	1.127	1.223	0.492	1.779	0.188	0.046	0.706	0.376	2.080	2.096	0.939	0.086	1.167	1.737	0.243	0.311	3.628	3.090	3.673	1.159	2.850	3.058	0.749	1.085	6.196	5.581	1.575	1.806	1.226	1.466	1.876	1.289	0.550	0.799	2.435	1.408	4.103	2.967	0.417	0.364	1.779	2.080	0.241	1.728	0.233	0.213
2162	chr12	117919788	117967348	+	0	NA	intron (NM_173598, intron 14 of 19)	L2c|LINE|L2	-143961	NM_001204218	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding	nan	nan	1.412	0.163	0.292	0.148	0.347	0.062	0.088	0.135	0.158	2.734	4.263	0.042	0.099	0.258	0.244	0.191	0.289	nan	nan	nan	0.122	0.330	0.360	0.165	0.258	nan	nan	0.767	0.636	0.241	0.279	0.359	0.443	0.350	0.930	nan	0.805	0.313	0.226	0.160	0.062	0.347	2.734	0.143	0.121	0.089	0.480
1132	chr10	71326829	71340701	+	0	NA	promoter-TSS (NM_020999)	promoter-TSS (NM_020999)	-555	NM_020999	50674	Hs.532682	NM_020999	ENSG00000122859	NEUROG3	Atoh5|Math4B|NGN-3|bHLHa7|ngn3	neurogenin 3	protein-coding	0.334	nan	11.071	0.102	0.153	0.092	0.139	0.064	0.023	0.057	0.047	0.439	0.573	0.031	0.072	0.226	0.244	0.074	0.096	5.604	5.167	0.170	0.074	0.049	0.032	0.061	0.109	0.230	nan	0.158	0.077	0.091	0.087	0.054	0.080	0.089	nan	0.188	0.197	0.032	0.013	0.021	0.023	0.139	0.439	0.028	0.014	0.021	
4308	chr2	43445264	43455678	+	0	NA	3' UTR (NM_006887, exon 2 of 2)	3' UTR (NM_006887, exon 2 of 2)	3274	NM_006887	678	Hs.503093	NM_006887	ENSG00000152518	ZFP36L2	BRF2|ERF-2|ERF2|RNF162C|TIS11D	ZFP36 ring finger protein like 2	protein-coding	5.549	nan	7.088	3.180	2.326	1.156	2.559	4.003	0.278	2.029	0.654	2.954	4.308	5.531	0.190	2.507	2.651	4.648	8.234	nan	2.652	4.342	1.705	5.770	5.694	2.942	4.072	5.456	8.479	5.196	5.889	1.966	3.309	1.946	1.691	5.635	5.979	nan	1.257	2.080	2.499	0.720	1.866	2.559	2.954	1.523	3.036	1.993	2.783
7890	chr8	117766644	117780109	+	0	NA	Intergenic	Intergenic	-5314	NM_003756	8667	Hs.492599	NM_003756	ENSG00000147677	EIF3H	EIF3S3|eIF3-gamma|eIF3-p40	eukaryotic translation initiation factor 3 subunit H	protein-coding	nan	nan	2.143	3.249	2.314	1.203	1.297	1.266	0.203	0.741	0.446	1.771	4.644	0.634	0.072	2.177	1.990	1.908	2.730	3.260	3.188	nan	2.373	10.495	nan	1.949	nan	2.651	2.820	2.963	2.874	1.831	2.496	2.691	3.276	2.288	2.423	2.788	1.398	1.142	1.195	0.295	0.838	1.297	1.771	0.268	1.227	0.813	0.564
4707	chr2	215481334	215496596	+	0	NA	Intergenic	Intergenic	114059	NR_047698	100885780	Hs.665982	NR_047698	ENSG00000224257	VWC2L-IT1	-	VWC2L intronic transcript 1	ncRNA	nan	1.141	nan	0.121	0.214	0.068	0.147	0.098	0.021	0.093	0.109	0.141	0.274	0.064	0.118	0.408	0.150	0.254	0.187	0.246	0.263	0.157	0.102	0.201	0.197	2.385	2.980	0.404	nan	0.920	0.690	0.134	0.249	0.053	0.060	2.002	5.992	0.257	0.322	0.025	0.047	0.018	0.046	0.147	0.141	0.070	0.027	0.037	1.857
3847	chr18	56729952	56771105	+	0	NA	Intergenic	Charlie1b|DNA|hAT-Charlie	47617	NR_024021	390858	Hs.716280	NR_024021		OACYLP	ACYL3P	O-acyltransferase like, pseudogene	pseudo	nan	1.247	1.486	3.013	1.062	0.548	0.489	0.085	0.074	1.186	0.561	6.226	2.276	0.024	0.094	0.401	0.391	0.319	0.340	5.368	7.143	4.615	1.703	1.041	1.005	0.199	0.387	9.558	7.434	0.699	0.552	0.187	0.249	1.775	2.001	0.307	0.609	nan	2.654	1.175	0.756	0.573	0.342	0.489	6.226	0.119	1.563	0.048	0.096
6552	chr5	172057641	172076232	+	0	NA	Intergenic	Intergenic	-1333	NM_001308178	54492	Hs.91521	NM_001142651	ENSG00000214357	NEURL1B	NEURL3|hNeur2|neur2	neuralized E3 ubiquitin protein ligase 1B	protein-coding	1.588	2.203	1.038	1.393	2.502	1.467	0.357	0.725	0.234	0.699	0.409	2.895	7.710	0.532	0.129	0.856	1.195	1.539	nan	2.127	1.885	1.591	0.659	0.659	0.700	1.698	nan	3.993	3.635	1.813	1.707	1.651	2.292	1.033	1.000	0.253	0.257	1.433	0.770	2.386	2.786	0.276	0.463	0.357	2.895	0.296	0.967	2.240	0.027
6927	chr6	119667889	119672633	+	0	NA	5' UTR (NM_005907, exon 2 of 13)	5' UTR (NM_005907, exon 2 of 13)	670	NM_005907	4121	Hs.102788	NM_005907	ENSG00000111885	MAN1A1	HUMM3|HUMM9|MAN9	mannosidase alpha class 1A member 1	protein-coding	3.260	0.952	nan	3.197	0.429	0.171	0.327	0.393		1.251	0.449	0.354	5.231	0.508	0.077	7.994	9.660	11.431	10.310	0.623	nan	nan	0.354	5.578	5.287	1.370	nan	6.537	11.984	0.867	0.817	2.629	6.871	6.499	7.941	0.185	nan	1.821	1.153	0.131	1.237	1.759	1.122	0.327	0.354	0.245	2.215	1.833	0.012
547	chr1	153483361	153511795	+	0	NA	Intergenic	AluSz|SINE|Alu	11139	NM_014624	6277	Hs.275243	NM_014624	ENSG00000197956	S100A6	2A9|5B10|CABP|CACY|PRA	S100 calcium binding protein A6	protein-coding	nan	nan	2.195	0.455	0.867	0.468	1.347	0.920	0.169	0.945	0.466	1.032	9.287	0.073	0.104	0.588	0.787	0.367	0.776	1.713	nan	3.811	1.060	0.520	0.529	2.445	3.464	1.268	1.863	1.547	1.386	1.199	1.342	3.060	3.232	1.114	3.095	1.319	0.803	2.155	1.274	1.190	0.062	1.347	1.032	0.646	1.742	0.663	1.027
631	chr1	163490851	163500125	+	0	NA	Intergenic	L1MB8|LINE|L1	-102507	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3 subunit J pseudogene	pseudo	0.948	nan	1.005	0.400	0.477	0.172	0.273	0.098	0.105	0.134	0.221	0.297	1.040	0.012	0.155	3.774	3.681	10.940	2.885	0.710	nan	0.604	0.218	0.984	1.016	0.896	1.069	0.626	nan	0.384	0.165	1.516	2.730	0.224	0.490	0.466	1.326	0.800	0.630	0.060	0.496	0.022	0.102	0.273	0.297	0.041	0.041	1.811	0.185
1422	chr11	57225022	57229776	+	0	NA	promoter-TSS (NM_178570)	promoter-TSS (NM_178570)	-611	NM_178570	349667	Hs.502618	NM_178570	ENSG00000186907	RTN4RL2	NGRH1|NgR2	reticulon 4 receptor-like 2	protein-coding	1.841	1.025	0.769	0.994	1.180	0.404	1.968	0.192		0.461	0.196	0.328	2.242	0.551	0.092	0.536	0.874	1.841	2.584	1.533	1.130	4.521	0.937	1.473	1.441	2.533	2.997	1.965	2.552	2.620	2.086	0.282	0.501	1.315	2.015	1.051	2.646	1.026	0.591	1.604	0.334	0.272	4.068	1.968	0.328	3.146	0.199	0.103	0.574
7856	chr8	104305366	104314467	+	0	NA	promoter-TSS (NM_001164615)	promoter-TSS (NM_001164615)	-745	NM_001164615	8323	Hs.591863	NM_003506	ENSG00000164930	FZD6	FZ-6|FZ6|HFZ6|NDNC10	frizzled class receptor 6	protein-coding	6.257	nan	nan	2.300	2.362	1.233	1.237	3.710	0.513	0.565	0.263	2.613	3.820	0.418	0.067	1.112	1.339	2.942	4.129	4.152	4.164	nan	2.050	3.767	3.803	3.007	nan	2.368	nan	nan	2.694	1.610	2.803	5.832	6.582	1.819	nan	2.539	1.225	0.604	0.324	1.414	2.156	1.237	2.613	0.267	3.243	0.818	0.406
949	chr1	242342480	242359483	+	0	NA	intron (NM_001320272, intron 6 of 10)	L1ME4a|LINE|L1	-188596	NM_001004343	440738	Hs.534971	NM_001004343	ENSG00000197769	MAP1LC3C	ATG8J|LC3C	microtubule associated protein 1 light chain 3 gamma	protein-coding	nan	1.089	nan	0.109	0.483	0.273	1.001	0.087	0.094	0.360	0.326	0.120	1.437	0.032	0.076	0.239	0.129	0.478	0.658	0.621	0.798	0.856	0.295	0.160	0.184	2.595	3.227	0.227	0.285	0.422	0.337	0.046	0.117	0.754	1.088	0.132	0.251	0.643	0.579	0.023	0.026	0.168	0.439	1.001	0.120	0.251	0.048	0.012	0.036
4713	chr2	217543530	217566945	+	0	NA	intron (NM_000599, intron 1 of 3)	intron (NM_000599, intron 1 of 3)	5035	NM_000599	3488	Hs.607212	NM_000599	ENSG00000115461	IGFBP5	IBP5	insulin like growth factor binding protein 5	protein-coding	nan	1.876	nan	2.782	3.133	1.574	1.164	0.628	0.145	1.385	0.920	3.768	5.318	0.092	0.086	0.348	0.197	0.462	1.293	5.011	4.173	2.669	0.845	0.280	0.335	2.461	2.897	5.583	nan	0.836	0.804	0.229	0.380	1.975	1.525	1.038	2.045	1.584	0.783	2.654	1.519	0.647	1.189	1.164	3.768	0.305	1.136	0.068	0.749
5262	chr22	37954906	37966019	+	0	NA	intron (NM_152243, intron 1 of 2)	intron (NM_152243, intron 1 of 2)	3991	NM_152243	11135	Hs.225356	NM_152243	ENSG00000128283	CDC42EP1	BORG5|CEP1|MSE55	CDC42 effector protein 1	protein-coding	1.210	nan	0.568	0.159	0.342	0.231	0.773	1.136	0.304	0.120	0.029	0.097	0.698	3.633	0.122	4.175	5.627	6.071	9.629	0.323	0.345	0.481	0.086	0.803	1.142	0.158	nan	0.177	0.340	nan	0.544	0.862	0.670	0.124	0.238	0.218	0.335	0.515	0.292	0.030	0.088	0.017	0.164	0.773	0.097	0.209	0.118	0.104	0.067
4970	chr20	45880295	45896006	+	0	NA	intron (NM_001281781, intron 11 of 20)	MIR3|SINE|MIR	-59096	NR_024594	100131496	Hs.662547	NR_024594	ENSG00000267882	LOC100131496	-	uncharacterized LOC100131496	ncRNA	nan	nan	1.447	0.480	1.715	0.907	0.311	0.283	0.174	0.290	0.292	1.763	0.512	0.117	0.073	0.614	0.697	0.411	0.612	2.090	2.094	nan	0.471	0.582	0.652	0.777	1.191	0.958	0.788	nan	0.931	0.489	0.716	0.147	0.158	0.518	1.632	1.283	0.602	0.739	3.943	0.031	0.524	0.311	1.763	0.420	0.045	0.289	0.370
8367	chrX	10689099	10738676	+	0	NA	intron (NM_033290, intron 1 of 9)	intron (NM_033290, intron 1 of 9)	-68108	NM_001098624	4281	Hs.27695	NM_000381	ENSG00000101871	MID1	BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding	0.914	nan	0.672	0.240	0.422	0.256	0.686	0.605	0.172	0.157	0.173	0.227	0.903	3.149	0.093	0.124	0.080	0.417	1.128	0.760	0.694	1.305	0.719	0.418	0.382	0.545	0.739	0.647	0.913	0.632	0.529	0.168	0.240	0.343	0.414	0.340	0.713	0.661	0.490	0.147	0.214	0.069	0.415	0.686	0.227	0.098	0.128	0.111	0.165
7591	chr8	10505423	10519633	+	0	NA	promoter-TSS (NM_178857)	promoter-TSS (NM_178857)	89	NM_178857	94137	Hs.33538	NM_178857	ENSG00000183638	RP1L1	DCDC4B	RP1 like 1	protein-coding	1.765	0.928	nan	0.080	0.644	0.273	0.948	0.126	0.079	0.265	0.277	0.199	0.123	0.053	0.082	0.434	0.376	0.215	0.405	1.615	nan	0.254	0.106	0.482	0.560	0.120	0.154	0.846	1.247	1.435	1.627	0.185	0.220	1.148	0.948	3.289	8.623	1.238	0.918	0.368	0.446	0.187	0.017	0.948	0.199	0.428	0.370	0.063	3.331
7731	chr8	67350479	67372172	+	0	NA	intron (NM_144650, intron 8 of 13)	intron (NM_144650, intron 8 of 13)	16607	NM_144650	137872	Hs.720023	NM_144650	ENSG00000147576	ADHFE1	ADH8|HMFT2263|HOT	alcohol dehydrogenase, iron containing 1	protein-coding	1.358	0.820	0.678	0.476	0.200	0.111	0.253	0.398	0.082	0.151	0.174	0.151	0.554	0.080	0.085	0.312	0.290	0.333	0.468	0.915	0.864	1.353	0.287	0.184	0.196	0.484	nan	0.229	0.265	nan	0.365	0.325	0.403	2.708	3.648	0.285	0.381	1.637	1.109	0.054	0.151	1.021	0.081	0.253	0.151	0.057	0.102	0.059	0.057
7903	chr8	121836411	121851076	+	0	NA	Intergenic	MIR|SINE|MIR	-19434	NM_021021	6641	Hs.46701	NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding	nan	nan	nan	0.073	0.300	0.099	0.105	0.122	0.077	0.074	0.067	0.158	nan	0.029	0.110	0.272	0.195	0.252	0.452	0.420	0.522	0.210	0.099	nan	nan	0.235	0.370	0.408	0.314	0.368	0.153	0.187	0.293	0.069	0.079	0.180	0.279	0.238	0.360	4.130	0.176	0.019		0.105	0.158	0.025	0.048	0.028	0.075
1276	chr11	1566737	1596937	+	0	NA	intron (NM_004420, intron 3 of 6)	intron (NM_004420, intron 3 of 6)	11313	NM_004420	1850	Hs.41688	NM_004420	ENSG00000184545	DUSP8	C11orf81|HB5|HVH-5|HVH8	dual specificity phosphatase 8	protein-coding	1.250	3.029	1.273	0.938	2.429	1.327	0.996	0.475	0.075	1.486	0.515	3.230	4.459	0.190	0.041	2.155	4.263	0.470	0.890	3.469	2.841	3.393	1.855	0.743	0.676	0.599	0.982	2.273	3.562	0.681	0.653	1.437	1.836	2.524	2.114	0.215	0.285	1.076	0.613	1.638	4.436	0.618	0.604	0.996	3.230	0.186	0.071	1.256	0.090
5958	chr4	82601251	82624865	+	0	NA	Intergenic	Intergenic	-219976	NM_152545	153020	Hs.591696	NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding	0.830	0.611	0.722	0.153	3.873	2.005	0.326	0.082	0.082	0.046	0.073	0.173	0.584	0.032	0.089	0.306	0.175	0.258	0.243	0.450	0.459	5.423	1.741	0.265	0.259	0.382	nan	0.815	0.460	1.040	0.871	0.067	0.141	1.294	1.307	0.288	nan	0.754	0.508	0.113	0.215	0.432	0.688	0.326	0.173	0.021	0.460	0.021	0.162
7560	chr7	156887384	156892397	+	0	NA	Intergenic	Intergenic	-41765	NM_014671	9690	Hs.118351	NM_014671	ENSG00000009335	UBE3C	HECTH2	ubiquitin protein ligase E3C	protein-coding	0.793	0.498	nan	0.516	12.577	6.151	0.462	0.163	0.064	0.573	0.245	2.161	0.311	0.109	0.127	0.435	0.734	0.144	0.154	2.630	2.081	0.732	0.118	0.109	0.165	0.101	0.225	5.778	5.452	0.507	0.293	3.318	3.665	0.313	0.270	0.198	0.209	1.318	0.917	2.080	6.746	0.057	0.164	0.462	2.161	0.252	0.123	3.274	0.025
4121	chr19	48421033	48463194	+	0	NA	promoter-TSS (NR_024218)	promoter-TSS (NR_024218)	-685	NR_024218	100170219	Hs.560634	NR_024218		SNAR-C4	-	small ILF3/NF90-associated RNA C4	snRNA	1.582	1.487	1.617	0.277	0.871	0.533	0.503	0.182	0.309	0.150	0.268	0.173	0.524	12.007	0.790	0.551	0.379	0.255	0.254	0.547	0.659	1.118	0.377	0.537	0.496	0.584	0.955	0.573	0.628	1.054	0.365	0.341	0.455	0.193	0.360	0.759	1.589	0.681	0.742	0.074	0.166	0.095	0.109	0.503	0.173	0.124	0.344	0.077	0.280
4315	chr2	44993358	45006785	+	0	NA	TTS (NM_024766)	TTS (NM_024766)	168575	NR_103785	100506108	Hs.503113	NR_103785	ENSG00000236502	SIX3-AS1	SIX3OS	SIX3 antisense RNA 1	ncRNA	2.134	nan	1.667	1.959	4.529	2.446	0.981	0.102	0.060	1.094	0.485	3.607	1.369	0.072	0.105	0.322	0.416	0.407	0.631	nan	4.332	3.382	1.205	0.539	0.418	0.484	0.725	2.404	2.842	2.214	1.845	0.297	0.504	4.613	5.165	2.481	8.652	nan	1.630	0.674	1.548	1.793	0.231	0.981	3.607	0.100	0.349	0.140	3.386
5583	chr3	141818403	141848832	+	0	NA	intron (NM_001178139, intron 1 of 12)	HAL1b|LINE|L1	34769	NM_001178139	7029	Hs.379018	NM_006286	ENSG00000114126	TFDP2	DP2	transcription factor Dp-2	protein-coding	1.287	nan	nan	0.200	0.515	0.258	0.102	0.251	0.185	0.318	0.313	0.192	0.265	0.068	0.108	0.315	0.264	0.305	0.450	0.378	0.518	nan	0.322	0.316	0.265	5.588	6.104	0.296	nan	nan	0.887	0.240	0.355	0.074	0.106	0.931	1.583	0.891	0.645	0.082	0.076	0.025	0.136	0.102	0.192	0.172	0.017	0.088	0.297
75	chr1	10487584	10499676	+	0	NA	intron (NR_037187, intron 1 of 2)	intron (NR_037187, intron 1 of 2)	2826	NM_001243768	100526739	Hs.412311	NM_198544	ENSG00000251503	APITD1-CORT	-	APITD1-CORT readthrough	protein-coding	1.863	1.301	nan	2.928	1.307	0.621	0.837	0.458	0.134	0.305	0.281	0.525	2.419	1.017	0.120	1.202	1.119	1.426	2.101	2.696	2.717	0.771	0.391	2.065	nan	1.601	nan	4.915	6.625	nan	1.013	0.677	0.775	0.836	0.898	1.973	1.967	1.474	0.808	0.568	0.656	0.141	0.190	0.837	0.525	0.171	0.470	0.131	0.452
7642	chr8	33453458	33458824	+	0	NA	promoter-TSS (NM_001305116)	promoter-TSS (NM_001305116)	-826	NM_001305116	78986	Hs.8719	NM_024025	ENSG00000133878	DUSP26	DSP-4|DUSP24|LDP-4|MKP-8|MKP8|NATA1|NEAP|SKRP3	dual specificity phosphatase 26	protein-coding	1.846	3.076	nan	2.951	2.119	0.721	5.555	0.097	0.061	2.983	1.405	3.991	5.364	0.042	0.132	1.035	2.123	1.537	1.837	13.777	12.677	8.229	2.976	0.300	0.451	1.644	2.103	3.580	4.049	6.977	10.248	1.522	2.157	4.809	2.410	0.842	1.711	7.754	4.741	4.274	4.142	0.745	1.064	5.555	3.991	2.043	1.693	1.144	0.563
2588	chr14	51544413	51566423	+	0	NA	intron (NM_052978, intron 1 of 6)	intron (NM_052978, intron 1 of 6)	7004	NM_052978	114088	Hs.654750	NM_015163	ENSG00000100505	TRIM9	RNF91|SPRING	tripartite motif containing 9	protein-coding	nan	nan	1.902	1.427	0.749	0.385	0.989	0.771	0.098	0.749	0.604	1.022	3.073	0.113	0.136	1.310	1.670	0.378	0.802	2.058	2.106	1.708	0.575	0.487	0.448	1.801	2.251	1.825	2.130	3.188	3.828	0.398	0.726	2.964	4.127	0.844	1.545	nan	0.904	1.588	1.103	0.852	0.559	0.989	1.022	0.301	1.368	0.244	0.545
1163	chr10	80704025	80738396	+	0	NA	intron (NR_024431, intron 7 of 9)	intron (NR_024431, intron 7 of 9)	105995	NR_024429	283050	Hs.309176	NR_015429	ENSG00000224596	ZMIZ1-AS1	-	ZMIZ1 antisense RNA 1	ncRNA	1.414	1.558	1.653	1.257	1.336	0.700	0.904	1.141	0.175	0.297	0.162	2.278	2.427	0.249	0.077	4.184	5.157	2.694	2.669	1.718	1.615	2.720	1.057	2.591	2.597	0.617	1.007	2.618	3.296	0.852	0.802	1.413	1.606	0.480	0.580	0.755	1.301	0.965	0.585	1.918	0.567	0.089	0.303	0.904	2.278	0.452	0.726	0.754	0.404
8163	chr9	76590738	76597610	+	0	NA	Intergenic	AluY|SINE|Alu	-392273	NR_121182	101927358	Hs.559523	NR_121182	ENSG00000227809	LOC101927358	-	uncharacterized LOC101927358	ncRNA	nan	nan	nan	0.153	1.191	0.562	0.094	0.318	0.093	0.411	0.207	5.792	0.179	0.031	0.095	0.256	0.141	0.162	nan	3.073	nan	0.098	0.105	0.191	0.326	0.066	0.151	3.261	5.073	0.203	0.091	0.057	0.115	0.036	0.103	0.189	0.285	1.029	0.503	0.008	0.064			0.094	5.792	0.041	1.330	0.015	0.019
8398	chrX	107654336	107686501	+	0	NA	intron (NM_001847, intron 2 of 44)	intron (NM_001847, intron 2 of 44)	11242	NM_001287760	1288	Hs.145586	NM_001847	ENSG00000197565	COL4A6	CXDELq22.3|DELXq22.3|DFNX6	collagen type IV alpha 6 chain	protein-coding	nan	nan	nan	0.221	0.371	0.221	0.104	0.175	0.044	0.960	0.507	0.016	1.112	0.276	0.165	0.284	0.191	0.296	0.288	0.128	0.153	3.103	1.216	0.672	0.659	0.953	1.145	0.265	0.259	0.423	0.214	0.121	0.143	0.868	1.093	0.091	0.181	0.774	0.308	0.050	0.064	0.222	0.007	0.104	0.016	0.012	0.013	0.021	0.246
1702	chr11	120760710	120767771	+	0	NA	intron (NM_001282470, intron 10 of 19)	MIR|SINE|MIR	1266	NR_132790	101929227	Hs.627156	NR_132790	ENSG00000250493	LOC101929227	-	uncharacterized LOC101929227	ncRNA	0.565	0.743	0.803	0.028	0.249	0.274	0.239	0.083		0.089	0.119	0.068	0.798	0.076	0.117	1.970	2.143	0.284	0.187	0.355	0.441	0.318	0.075	0.370	0.395	1.246	1.455	0.120	0.123	0.438	0.234	6.173	6.731	0.183	0.197	0.256	nan	0.799	0.812	0.134	0.238	0.041	0.011	0.239	0.068	0.055	0.144	7.864	0.300
4518	chr2	140560242	140565633	+	0	NA	Intergenic	Intergenic	781317	NR_106979	102465692		NR_106979	ENSG00000283506	MIR7157	hsa-mir-7157	microRNA 7157	ncRNA	0.769	nan	0.920	0.194	0.151	0.148	0.186	0.056	0.031	0.030	0.124	0.449	0.227	0.041	0.127	0.331	0.187	0.133	0.164	0.848	0.991	0.409	0.132	0.076	0.133	2.260	3.072	0.370	0.345	0.684	0.653	0.055	0.178	34.101	42.978	0.737	1.118	0.164	0.293	0.010	0.032	9.241	0.772	0.186	0.449	0.270		0.055	0.244
3118	chr16	31083301	31086975	+	0	NA	promoter-TSS (NM_014699)	promoter-TSS (NM_014699)	-315	NM_001172668	79759	Hs.102928	NM_024706	ENSG00000167394	ZNF668	-	zinc finger protein 668	protein-coding	9.051	4.012	6.546	8.275	6.044	3.315	4.963	3.531	0.393	2.544	0.914	7.765	19.456	5.238	0.102	5.978	7.515	8.489	11.920	9.946	8.618	16.280	5.215	11.476	11.815	6.210	8.559	14.832	16.880	8.843	10.036	3.628	7.848	9.868	10.963	4.232	5.892	5.509	2.608	4.922	3.854	1.767	3.096	4.963	7.765	2.808	6.134	2.858	1.918
4141	chr19	50429899	50434334	+	0	NA	promoter-TSS (NM_001193646)	promoter-TSS (NM_001193646)	157	NM_012068	22809	Hs.9754	NM_012068	ENSG00000169136	ATF5	ATFX|HMFN0395	activating transcription factor 5	protein-coding	7.995	3.655	6.328	6.097	16.424	9.602	5.962	2.631	0.685	3.492	1.478	6.823	8.760	8.611	0.285	8.091	8.367	6.774	8.896	14.457	12.978	10.653	6.283	20.352	21.398	7.057	8.821	9.900	14.460	11.868	12.940	9.251	13.670	10.421	11.638	8.372	8.998	6.124	3.439	7.270	9.261	2.578	5.573	5.962	6.823	2.705	3.381	4.186	4.019
5212	chr22	25215678	25224928	+	0	NA	intron (NM_133454, intron 2 of 24)	intron (NM_133454, intron 2 of 24)	18115	NM_133454	129049	Hs.474397	NM_133454	ENSG00000167037	SGSM1	RUTBC2	small G protein signaling modulator 1	protein-coding	0.763	nan	0.715	0.316	1.570	0.873	0.264	0.073	0.053	0.594	0.256	1.240	1.292	0.059	0.074	0.277	0.395	0.215	0.256	0.513	0.549	2.412	0.793	0.184	0.334	0.196	0.443	0.947	1.011	0.383	0.298	0.299	0.276	1.227	1.460	0.104	0.195	4.497	2.047	0.151	0.270	0.156	0.017	0.264	1.240	0.230	0.888	0.097	0.027
6313	chr5	71076487	71087992	+	0	NA	Intergenic	Intergenic	67249	NM_004291	9607	Hs.1707	NM_004291	ENSG00000164326	CARTPT	CART	CART prepropeptide	protein-coding	0.966	nan	1.171	0.180	1.865	0.961	0.695	0.204	0.070	0.203	0.120	0.270	1.482	0.087	0.112	0.424	0.451	0.227	0.313	0.676	0.674	10.259	3.615	0.180	0.173	0.600	nan	0.819	0.677	1.544	1.385	0.282	0.301	2.214	2.883	0.622	1.269	1.206	0.759	0.377	0.649	0.447	0.110	0.695	0.270	0.050	0.362	0.086	0.662
6565	chr5	176156050	176171919	+	0	NA	Intergenic	Intergenic	-6222	NR_108030	102577424	Hs.349025	NR_108030	ENSG00000248859	LINC01574	HI-LNC12	long intergenic non-protein coding RNA 1574	ncRNA	1.284	1.953	1.348	0.545	0.324	0.202	1.291	0.080	0.041	1.078	0.736	1.585	4.913	0.144	0.080	0.372	0.469	0.145	nan	3.751	3.802	0.935	0.310	0.143	0.129	4.235	nan	0.937	1.326	1.541	1.580	0.540	0.521	2.338	1.853	0.491	0.762	0.956	0.654	0.934	0.799	0.613	0.156	1.291	1.585	0.458	0.300	0.292	0.094
146	chr1	25558069	25575040	+	0	NA	Intergenic	CpG	7456	NR_135785	57035	Hs.259412	NM_020317	ENSG00000117616	RSRP1	C1orf63|NPD014	arginine and serine rich protein 1	protein-coding	2.687	2.089	nan	3.649	2.255	1.075	1.904	1.285	0.188	1.140	0.656	0.949	6.201	2.681	0.127	2.696	3.217	2.689	3.976	5.127	5.025	2.902	1.363	5.729	5.946	2.649	3.649	3.933	5.455	3.331	3.202	2.012	3.091	1.220	1.599	1.859	3.633	2.156	1.070	2.652	2.597	0.162	0.997	1.904	0.949	0.763	1.351	1.129	0.776
5343	chr3	21516959	21526769	+	0	NA	intron (NM_024697, intron 4 of 7)	AluSx1|SINE|Alu	-62417	NR_046731	100874216	Hs.661720	NR_046731	ENSG00000225542	ZNF385D-AS1	-	ZNF385D antisense RNA 1	ncRNA	0.524	0.715	0.573	0.027	0.113	0.033	0.025	0.361	0.066	0.048	0.065		0.161		0.074	0.227	0.119	5.612	4.950	0.144	0.111	0.101	0.049	0.184	0.176	0.640	0.805	0.254	0.171	nan	0.172	0.121	0.244	0.035	0.062	0.201	0.256	0.230	0.195	0.006	0.045	0.020	0.032	0.025		0.019	0.031	0.010	0.051
7214	chr7	26475756	26501171	+	0	NA	intron (NR_015364, intron 1 of 4)	L2c|LINE|L2	45355	NR_015364	441204	Hs.587432	NR_015364		LOC441204	-	uncharacterized LOC441204	ncRNA	1.589	1.517	1.743	1.021	0.640	0.308	0.423	0.106	0.076	0.221	0.208	0.146	0.464	0.068	0.142	0.742	0.793	0.355	nan	0.765	0.625	1.682	0.635	0.284	0.298	0.663	0.866	1.944	1.313	0.792	0.594	0.600	1.023	1.118	1.108	0.761	nan	0.860	0.634	4.052	0.901	0.333	0.427	0.423	0.146	0.137	0.084	0.363	0.231
1351	chr11	24393453	24408736	+	0	NA	Intergenic	L1MA5A|LINE|L1	-117422	NM_001009909	338645	Hs.144138	NM_001009909	ENSG00000187398	LUZP2	KFSP2566|PRO6246	leucine zipper protein 2	protein-coding	0.512	0.871	0.628	0.080	0.145	0.074	0.049	0.079	0.094	0.093	0.115	0.023	0.324	0.022	0.101	0.510	0.291	0.304	0.330	0.241	0.317	0.089	0.052	0.220	0.222	3.418	3.996	0.222	0.222	0.225	0.071	0.137	0.173	0.129	0.158	0.137	0.195	0.484	0.407	0.233	0.164	0.012	0.010	0.049	0.023	0.038	0.020	0.078	0.025
2720	chr14	87790244	87803353	+	0	NA	Intergenic	Intergenic	424676	NR_038445	283585	Hs.381998	NR_038445	ENSG00000258804	LINC01148	-	long intergenic non-protein coding RNA 1148	ncRNA	nan	0.728	0.826	0.100	0.338	0.122	0.283	0.108	0.210	0.083	0.113	0.071	0.410	0.075	0.090	0.340	0.180	0.189	0.238	0.609	0.591	0.536	0.160	0.301	0.313	1.006	1.367	0.231	0.213	0.867	0.370	0.181	0.230	0.298	0.399	0.321	0.757	0.903	0.666	4.221	0.056	0.109	0.445	0.283	0.071	0.111	0.077	0.037	0.056
528	chr1	150479544	150489550	+	0	NA	intron (NM_004425, intron 7 of 9)	intron (NM_004425, intron 7 of 9)	-3686	NR_051960	100874054	Hs.576460	NR_051960	ENSG00000228126	FALEC	FAL1|LINC00568|ncRNA-a1	focally amplified long non-coding RNA in epithelial cancer	ncRNA	nan	nan	1.747	0.451	0.941	0.497	0.838	0.764	0.344	1.279	0.952	1.533	3.563	0.930	0.099	1.039	1.422	1.488	2.115	2.525	nan	1.994	0.537	1.128	1.139	1.338	1.916	2.227	2.640	1.061	1.053	1.602	2.817	1.337	1.416	1.596	2.397	1.859	0.877	0.424	1.215	0.321	0.500	0.838	1.533	0.262	4.108	1.740	0.613
164	chr1	27840743	27872847	+	0	NA	Intergenic	AluSx3|SINE|Alu	-40097	NM_001201404	10163	Hs.469244	NM_006990	ENSG00000158195	WASF2	IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2	WAS protein family member 2	protein-coding	2.972	3.329	nan	5.174	0.993	0.559	2.478	0.299	0.095	1.558	0.864	0.963	3.410	0.200	0.102	1.404	2.703	0.412	0.720	5.422	5.646	3.120	1.098	1.175	1.454	3.098	4.300	4.736	6.523	2.469	2.764	1.149	1.850	2.770	2.180	2.867	4.710	3.198	1.648	5.570	3.675	0.927	0.435	2.478	0.963	1.390	2.107	1.749	1.356
7803	chr8	95955082	95973654	+	0	NA	Intergenic	Intergenic	-2753	NM_001135733	94241	Hs.492261	NM_033285	ENSG00000164938	TP53INP1	SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1	tumor protein p53 inducible nuclear protein 1	protein-coding	nan	1.361	3.032	1.276	1.386	0.922	0.759	1.212	0.228	0.263	0.280	2.257	4.842	0.239	0.118	1.268	1.284	1.625	nan	2.865	2.876	2.605	0.782	1.183	1.069	2.051	2.776	4.113	6.611	0.900	0.670	1.053	2.262	2.175	2.460	0.811	1.795	0.731	0.495	1.567	0.259	0.856	1.289	0.759	2.257	0.470	0.966	1.110	0.266
5030	chr20	60715642	60724789	+	0	NA	intron (NM_198935, intron 1 of 10)	MIR|SINE|MIR	1439	NR_125981	26039	Hs.154429	NM_015558	ENSG00000184402	SS18L1	CREST|LP2261	SS18L1, nBAF chromatin remodeling complex subunit	protein-coding	3.784	3.656	2.333	2.675	2.678	1.667	3.014	2.343	0.262	1.250	0.642	3.937	5.236	2.542	0.122	4.782	nan	2.858	3.822	4.803	5.316	3.923	2.127	10.871	10.776	1.797	2.720	3.700	5.777	3.609	4.002	3.430	7.068	1.685	1.610	3.383	2.370	1.717	0.997	1.669	3.335	0.465	1.613	3.014	3.937	0.553	3.137	1.256	0.745
7249	chr7	33429466	33442174	+	0	NA	intron (NM_001033604, intron 18 of 21)	L1ME4a|LINE|L1	266668	NM_014451	27241	Hs.372360	NM_014451	ENSG00000122507	BBS9	B1|C18|D1|PTHB1	Bardet-Biedl syndrome 9	protein-coding	2.687	1.278	2.434	3.490	1.630	0.870	0.182	0.216	0.227	0.351	0.268	2.446	2.411	0.077	0.175	0.453	0.305	0.282	0.818	3.821	nan	4.942	1.333	0.431	0.393	2.708	nan	nan	nan	2.443	2.080	0.093	0.217	0.392	0.586	0.150	nan	1.538	1.107	1.774	0.551	0.075	0.870	0.182	2.446	0.779	1.328	0.055	0.068
2898	chr15	60766910	60772108	+	0	NA	intron (NM_001276385, intron 2 of 8)	intron (NM_001276385, intron 2 of 8)	1850	NM_001276385	79664	Hs.200943	NM_024611	ENSG00000128915	ICE2	BRCC1|NARG2	interactor of little elongation complex ELL subunit 2	protein-coding	3.947	2.837	nan	2.442	3.607	1.354	2.892	1.364	0.172	2.148	0.872	4.262	6.423	2.163	0.082	4.052	3.758	10.318	11.204	3.784	3.595	nan	2.033	6.243	6.594	4.536	5.279	4.431	7.046	7.566	7.088	3.086	4.610	5.404	5.317	4.078	4.238	2.563	1.652	1.373	1.472	0.750	0.766	2.892	4.262	1.109	1.997	1.137	1.091
882	chr1	223885880	223937338	+	0	NA	intron (NM_001748, intron 2 of 20)	intron (NM_001748, intron 2 of 20)	11490	NM_001748	824	Hs.350899	NM_001748	ENSG00000162909	CAPN2	CANP2|CANPL2|CANPml|mCANP	calpain 2	protein-coding	1.323	nan	1.250	1.244	0.746	0.393	1.227	0.766	0.216	1.243	0.449	0.866	5.285	0.334	0.123	0.692	0.862	3.029	4.348	1.056	nan	1.674	0.468	0.983	1.122	0.756	1.199	1.727	2.466	0.586	0.467	0.293	0.341	0.818	0.780	0.542	0.905	2.374	1.061	0.722	0.448	0.122	0.127	1.227	0.866	0.195	0.456	0.063	0.259
5936	chr4	74511284	74522927	+	0	NA	Intergenic	Intergenic	-30757	NM_001270392	166824	Hs.529677	NM_177532	ENSG00000169435	RASSF6	-	Ras association domain family member 6	protein-coding	0.714	0.641	0.705	1.919	2.913	1.560	0.362	0.143	0.055	0.326	0.130	6.364	0.617	0.018	0.099	0.611	0.558	0.409	0.465	2.234	3.056	3.007	0.616	1.534	1.598	0.078	0.205	7.417	4.076	0.433	0.161	0.375	0.643	0.235	0.280	0.272	0.400	1.477	0.689	0.081	0.670	0.041	0.143	0.362	6.364	0.017	0.566	0.408	0.113
7217	chr7	26723750	26741016	+	0	NA	intron (NM_001303468, intron 9 of 12)	intron (NM_001303468, intron 9 of 12)	53679	NM_001302625	285941	Hs.413394	NM_001145531		C7orf71	-	chromosome 7 open reading frame 71	protein-coding	1.511	1.046	1.407	0.177	0.338	0.140	0.177	0.366	0.102	0.180	0.200	0.125	0.347	0.156	0.177	1.653	1.887	1.039	nan	0.424	0.591	0.536	0.232	0.415	0.517	2.434	3.313	0.502	0.514	0.412	0.162	0.619	1.000	1.063	1.385	0.122	nan	0.626	0.483	0.048	0.061	0.353	0.064	0.177	0.125	0.034	0.094	0.508	0.021
4585	chr2	169013181	169051093	+	0	NA	intron (NM_013233, intron 2 of 17)	intron (NM_013233, intron 2 of 17)	71968	NM_013233	27347	Hs.276271	NM_013233	ENSG00000198648	STK39	DCHT|PASK|SPAK	serine/threonine kinase 39	protein-coding	1.194	1.173	nan	0.242	1.145	0.607	0.319	0.260	0.042	0.355	0.327	0.569	0.868	0.057	0.083	0.766	0.847	1.125	1.245	0.290	0.302	1.375	0.511	0.449	0.471	1.141	1.429	0.658	0.654	2.479	2.185	1.646	2.380	1.129	2.172	0.994	3.437	0.911	0.544	0.178	0.158	0.454	0.311	0.319	0.569	0.066	0.072	2.278	0.674
6849	chr6	74266106	74303147	+	0	NA	Intergenic	AluSz|SINE|Alu	-53871	NM_001402	1915	Hs.535192	NM_001402	ENSG00000156508	EEF1A1	CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	protein-coding	nan	nan	0.701	0.342	0.250	0.104	0.754	1.323	0.477	0.101	0.120	0.113	0.430	3.270	0.217	0.394	0.312	0.643	1.398	0.313	0.309	1.119	0.242	0.272	0.330	0.231	0.379	0.318	0.351	0.373	0.183	0.182	0.233	0.161	0.302	0.302	0.553	0.279	0.324	0.124	0.101	0.036	0.121	0.754	0.113	0.042	0.134	0.048	0.111
3401	chr17	39801340	39824209	+	0	NA	Intergenic	Intergenic	-16323	NR_033415	284116	Hs.725790	NR_033415	ENSG00000214514	KRT42P	-	keratin 42 pseudogene	pseudo	nan	1.737	1.700	0.219	1.549	0.856	0.586	0.187	0.098	0.834	0.466	1.104	3.880	0.316	0.068	3.034	4.864	3.909	5.413	nan	1.809	2.426	0.586	1.566	1.654	0.582	0.930	1.783	2.529	nan	0.947	1.306	1.985	1.600	1.080	0.396	0.476	1.389	0.973	2.328	0.658	0.270	0.319	0.586	1.104	0.740	0.687	1.002	0.117
3139	chr16	51177752	51187658	+	0	NA	intron (NM_002968, intron 1 of 2)	intron (NM_002968, intron 1 of 2)	1803	NM_001127892	6299	Hs.135787	NM_002968	ENSG00000103449	SALL1	HEL-S-89|HSAL1|Sal-1|TBS|ZNF794	spalt like transcription factor 1	protein-coding	nan	nan	nan	5.637	1.540	0.834	4.383	0.076	0.064	2.840	1.209	1.758	4.512	0.099	0.068	0.304	0.215	0.216	0.283	3.342	3.049	1.430	0.479	2.211	2.189	0.212	nan	nan	nan	nan	0.110	0.231	0.327	0.114	0.058	5.940	9.141	nan	1.393	0.500	0.116	0.010	3.331	4.383	1.758	0.038	0.010	0.121	2.194
2538	chr14	32767231	32776197	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-26765	NM_004274	9472	Hs.509083	NM_004274	ENSG00000151320	AKAP6	ADAP100|ADAP6|AKAP100|PRKA6|mAKAP	A-kinase anchoring protein 6	protein-coding	2.008	0.923	0.823	0.118	0.226	0.107	0.265	0.336	0.130	0.052	0.084	0.160	0.493	0.036	0.128	0.207	0.108	0.194	0.383	0.319	0.412	0.364	0.162	0.232	0.237	1.989	1.829	0.307	0.386	8.974	7.481	0.123	0.153	1.074	0.963	0.534	1.269	0.781	0.894	0.052	0.120	0.317	0.230	0.265	0.160	0.762	0.091	0.044	0.276
1364	chr11	31657399	31663384	+	0	NA	intron (NM_001288725, intron 7 of 10)	intron (NM_001288725, intron 7 of 10)	129115	NM_019040	26610	Hs.175534	NM_019040	ENSG00000109911	ELP4	AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4	elongator acetyltransferase complex subunit 4	protein-coding	0.948	0.968	nan	0.162	0.292	0.182	0.148	0.160	0.081	0.065	0.229	0.020	0.203		0.133	0.443	0.406	0.721	0.445	0.295	0.536	0.433	0.192	0.248	0.208	7.246	7.009	0.203	0.201	0.938	0.527	0.295	0.304	0.260	0.292	0.345	nan	0.601	0.470	0.018	0.030	0.071	0.172	0.148	0.020	0.523	0.034	0.049	0.228
7074	chr6	158394178	158408002	+	0	NA	Intergenic	MER104|DNA|TcMar-Tc2	-1798	NM_003898	8871	Hs.434494	NM_003898	ENSG00000078269	SYNJ2	INPP5H	synaptojanin 2	protein-coding	nan	1.145	1.676	1.377	1.017	0.511	1.358	0.584	0.106	0.452	0.338	1.840	1.680	0.979	0.075	1.291	1.742	1.637	3.516	1.678	nan	5.893	1.718	2.659	2.796	0.306	0.686	1.640	2.350	1.072	0.944	0.806	1.366	2.185	3.132	0.769	nan	0.692	0.478	1.286	0.753	0.836	0.276	1.358	1.840	0.190	0.573	0.437	0.250
7866	chr8	107187248	107223722	+	0	NA	Intergenic	Intergenic	-76921	NM_018002	55074	Hs.127286	NM_018002	ENSG00000164830	OXR1	Nbla00307|TLDC3	oxidation resistance 1	protein-coding	1.540	nan	nan	0.193	0.294	0.121	0.196	0.373	0.124	0.048	0.099	0.295	0.713	0.012	0.077	0.356	0.234	0.236	0.337	0.322	0.474	nan	0.141	0.546	0.544	4.294	nan	0.958	nan	nan	0.295	0.172	0.248	0.152	0.208	0.410	nan	0.379	0.483	0.023	0.063	0.028	0.039	0.196	0.295	0.136	0.092	0.076	0.163
7378	chr7	92823031	92862768	+	0	NA	intron (NM_001346642, intron 3 of 9)	intron (NM_001346642, intron 3 of 9)	6009	NM_198151	253012	Hs.443169	NM_198151	ENSG00000188175	HEPACAM2	MIKI	HEPACAM family member 2	protein-coding	nan	1.018	nan	1.342	0.684	0.331	0.164	0.142	0.097	1.930	1.108	0.959	0.877	0.291	0.161	2.152	2.229	2.173	0.998	1.571	1.647	3.038	1.736	6.165	6.322	1.538	1.967	1.285	1.582	1.543	1.297	0.624	1.068	3.536	5.239	0.584	nan	2.509	1.235	0.076	0.322	1.105	0.578	0.164	0.959	0.430	0.255	0.391	0.153
978	chr1	246941784	246960894	+	0	NA	Intergenic	MamRep1879|DNA|hAT?	-1580	NR_015422	149134	Hs.720494	NM_207326		LINC01341	-	long intergenic non-protein coding RNA 1341	ncRNA	nan	0.992	nan	0.775	0.670	0.218	0.548	0.191	0.126	0.171	0.175	1.059	0.704	0.080	0.121	0.452	0.591	0.595	0.915	1.678	1.432	0.773	0.288	1.453	1.499	0.352	0.583	2.964	3.358	0.406	0.381	0.237	0.274	0.486	0.396	0.405	0.767	1.514	1.005	6.209	1.601	0.069	0.162	0.548	1.059	0.694	0.266	0.079	0.097
4774	chr2	237720024	237738140	+	0	NA	Intergenic	MamGypLTR2b|LTR|Gypsy	235728	NR_135202	93463	Hs.652810	NR_135202	ENSG00000124835	LOC93463	-	uncharacterized LOC93463	ncRNA	1.156	nan	2.961	0.851	0.374	0.134	0.255	0.046	0.035	0.061	0.054	0.313	2.854	0.042	0.097	0.924	0.924	0.184	0.773	0.918	0.994	0.157	0.086	0.509	0.541	0.646	0.977	1.080	nan	1.115	0.736	0.347	0.571	0.082	0.162	0.279	0.361	0.170	0.209	6.996	0.119	0.026	0.077	0.255	0.313	0.150	0.469	0.290	0.028
3752	chr18	39100949	39118018	+	0	NA	Intergenic	Intergenic	-8922	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA	nan	0.796	0.819	0.277	1.603	0.951	0.363	0.066	0.019	0.455	0.222	0.232	0.282	0.013	0.057	0.374	0.211	0.363	0.233	0.394	0.499	4.212	0.826	0.093	0.100	0.565	0.728	nan	0.454	0.564	0.262	0.186	0.394	0.892	0.781	0.188	0.421	2.496	1.341	0.023	0.069	0.050	0.088	0.363	0.232	0.022	0.071	0.120	0.043
2144	chr12	112272166	112283325	+	0	NA	non-coding (NR_015404, exon 2 of 2)	non-coding (NR_015404, exon 2 of 2)	-2287	NM_003668	8550	Hs.333120	NM_003668	ENSG00000089022	MAPKAPK5	MAPKAP-K5|MK-5|MK5|PRAK	mitogen-activated protein kinase-activated protein kinase 5	protein-coding	nan	nan	2.245	1.919	2.261	1.246	2.062	0.858	0.158	1.050	0.690	2.536	3.372	1.752	0.145	3.596	3.505	3.174	4.641	nan	nan	nan	2.354	9.237	10.323	2.003	2.835	nan	nan	4.224	5.068	2.768	4.460	3.536	4.034	3.915	4.298	nan	1.732	0.857	1.808	0.477	0.939	2.062	2.536	0.863	1.609	0.833	1.386
378	chr1	81695608	81711800	+	0	NA	Intergenic	Intergenic	319683	NR_125943	101927434	Hs.130394	NR_125943	ENSG00000234953	LOC101927434	-	uncharacterized LOC101927434	ncRNA	0.782	nan	nan	0.113	0.266	0.189	0.131	0.161	0.110	0.214	0.121	0.089	1.004	5.526	0.215	0.356	0.211	0.528	0.577	0.621	0.603	2.055	0.630	0.257	0.230	0.530	0.767	1.081	1.171	0.387	0.163	0.128	0.241	0.036	0.081	0.362	0.714	0.504	0.530	0.024	0.099	0.012	0.109	0.131	0.089	0.006	0.307	0.061	0.082
889	chr1	225792400	225820741	+	0	NA	intron (NM_018212, intron 1 of 13)	intron (NM_018212, intron 1 of 13)	34275	NM_001008493	55740	Hs.497893	NM_018212	ENSG00000154380	ENAH	ENA|MENA|NDPP1	enabled homolog (Drosophila)	protein-coding	1.685	nan	2.188	0.347	0.515	0.362	0.253	0.684	0.248	0.238	0.300	0.211	0.436	0.483	0.133	0.483	0.403	0.770	1.561	0.476	nan	0.678	0.261	1.134	1.167	0.950	1.329	1.192	1.185	1.457	1.214	0.230	0.279	0.227	0.242	1.885	5.208	0.494	0.356	0.105	0.140	0.035	0.364	0.253	0.211	0.089	0.072	0.094	1.024
4926	chr20	32132904	32191324	+	0	NA	intron (NM_005093, intron 2 of 11)	intron (NM_005093, intron 2 of 11)	11943	NM_005093	9139	Hs.153934	NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 translocation partner 2	protein-coding	1.583	2.325	3.796	3.079	2.413	1.180	0.699	0.763	0.190	1.621	0.980	1.331	4.223	0.123	0.132	1.562	1.715	0.814	0.864	3.604	nan	5.579	2.103	2.380	2.423	2.805	3.336	2.752	3.603	2.961	2.060	0.842	1.073	2.503	3.471	1.152	nan	1.498	0.710	0.287	1.172	0.829	0.657	0.699	1.331	0.237	0.648	0.347	0.873
3390	chr17	37754916	37794597	+	0	NA	Intergenic	Intergenic	-8421	NM_032192	84152	Hs.286192	NM_032192	ENSG00000131771	PPP1R1B	DARPP-32|DARPP32	protein phosphatase 1 regulatory inhibitor subunit 1B	protein-coding	nan	1.047	1.755	0.520	2.145	1.114	0.752	0.415	0.126	0.647	0.423	1.016	1.765	0.377	0.073	3.722	5.985	0.698	0.975	nan	2.400	1.633	0.610	2.507	2.650	1.032	1.559	2.594	3.392	nan	3.258	1.034	1.528	0.920	0.789	0.676	0.972	1.370	0.755	0.572	0.933	0.270	0.378	0.752	1.016	1.185	0.580	0.934	0.251
5135	chr21	42687394	42696103	+	0	NA	intron (NM_206964, intron 1 of 6)	MLT1B|LTR|ERVL-MaLR	3087	NM_206964	54097	Hs.473877	NM_058186	ENSG00000183844	FAM3B	2-21|C21orf11|C21orf76|ORF9|PANDER|PRED44	family with sequence similarity 3 member B	protein-coding	nan	0.814	1.341	2.262	1.593	0.448	0.157	0.110	0.055	0.777	0.371	4.045	10.653	0.013	0.054	1.100	2.208	0.267	0.429	1.563	1.539	nan	1.457	1.169	1.236	0.143	nan	10.457	12.588	0.368	0.180	4.528	8.048	0.776	0.454	0.093	0.175	3.543	1.919	1.188	9.345	0.011	0.055	0.157	4.045	0.033	0.395	6.737	0.040
6121	chr5	498248	539242	+	0	NA	intron (NM_004174, intron 1 of 16)	intron (NM_004174, intron 1 of 16)	5804	NM_004174	6550	Hs.658120	NM_004174	ENSG00000066230	SLC9A3	DIAR8|NHE-3|NHE3	solute carrier family 9 member A3	protein-coding	0.491	1.870	1.078	0.511	0.623	0.203	0.383	0.155	0.110	0.152	0.137	0.710	2.673	0.087	0.089	0.329	0.242	0.306	nan	1.379	1.409	0.481	0.137	0.093	0.127	0.154	0.380	nan	0.616	nan	0.262	0.250	0.293	0.188	0.227	0.048	0.077	1.359	nan	3.434	1.417	0.021	0.048	0.383	0.710	0.224	0.129	0.067	0.027
3972	chr19	13043309	13051299	+	0	NA	Intergenic	AluJr|SINE|Alu	-2110	NM_004343	811	Hs.515162	NM_004343	ENSG00000179218	CALR	CRT|HEL-S-99n|RO|SSA|cC1qR	calreticulin	protein-coding	5.151	2.697	5.568	3.075	5.196	2.728	3.233	1.699	0.202	1.571	0.815	4.027	4.362	2.070	0.098	3.068	3.399	3.053	5.275	6.585	6.752	8.822	4.043	5.268	5.335	3.705	5.023	6.256	10.146	9.131	9.418	2.013	4.032	4.764	5.649	8.713	8.836	4.604	2.022	9.184	2.823	1.158	1.055	3.233	4.027	1.316	2.431	0.985	4.074
684	chr1	179049893	179061478	+	0	NA	intron (NM_022371, intron 3 of 5)	AluY|SINE|Alu	4573	NM_022371	64222	Hs.584957	NM_022371	ENSG00000186283	TOR3A	ADIR|ADIR2	torsin family 3 member A	protein-coding	nan	nan	nan	0.964	0.802	0.527	1.359	2.727	0.365	1.101	0.570	1.188	2.008	0.906	0.137	2.881	5.674	5.052	5.158	nan	1.500	2.059	0.853	2.148	2.360	0.971	1.771	2.188	3.012	0.995	1.106	5.085	10.458	1.876	1.684	1.060	nan	1.225	0.717	0.622	1.757	0.202	0.376	1.359	1.188	0.288	0.879	5.325	0.482
6041	chr4	145958435	145969855	+	0	NA	intron (NM_001256710, intron 4 of 5)	intron (NM_001256710, intron 4 of 5)	54389	NM_001318367	10393	Hs.480876	NM_014885	ENSG00000164162	ANAPC10	APC10|DOC1	anaphase promoting complex subunit 10	protein-coding	0.752	0.799	0.640	0.207	0.240	0.098	0.123	0.202	0.028	0.028	0.129	0.080	0.202	0.076	0.073	0.407	0.320	6.037	1.678	0.187	0.271	0.164	0.094	0.210	0.192	0.410	0.522	0.237	0.245	0.372	0.242	0.357	0.518	0.100	0.071	0.487	2.219	0.254	0.310	0.010	0.054	0.008	0.090	0.123	0.080	0.050		0.208	1.191
7168	chr7	13933848	13950921	+	0	NA	intron (NM_004956, intron 12 of 13)	intron (NM_004956, intron 12 of 13)	83755	NM_001163150	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding	nan	1.494	nan	0.186	1.098	0.586	0.554	0.622	0.056	1.829	0.966	0.762	1.974	0.072	0.122	nan	0.686	2.048	2.232	0.722	0.885	1.093	0.441	0.330	0.364	0.923	1.247	0.727	0.560	0.278	0.114	0.330	0.243	2.316	3.457	0.224	0.274	0.719	0.469	0.081	0.346	0.568	0.116	0.554	0.762	0.062	0.179	0.052	0.109
8223	chr9	101102023	101109304	+	0	NA	intron (NM_005458, intron 13 of 18)	intron (NM_005458, intron 13 of 18)	-87660	NM_018421	55357	Hs.371016	NM_018421	ENSG00000095383	TBC1D2	PARIS-1|PARIS1|TBC1D2A	TBC1 domain family member 2	protein-coding	1.541	0.837	1.722	0.144	0.397	0.153	0.104	0.031	0.044	0.109	0.104	0.066	0.352	0.015	0.085	0.296	0.160	0.125	0.184	0.292	0.353	0.266	0.057	0.093	0.061	0.376	0.811	0.232	nan	8.937	9.217	0.087	0.127	0.884	0.682	0.925	3.014	nan	0.546	0.015	0.037	0.209	0.139	0.104	0.066	0.399	0.014	0.055	1.678
1924	chr12	46649523	46668617	+	0	NA	intron (NM_001278387, intron 1 of 17)	MIRb|SINE|MIR	1208	NM_001278389	81539	Hs.533770	NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding	2.841	nan	1.831	2.496	3.066	1.477	1.353	1.670	0.185	1.635	1.012	2.015	2.216	2.596	0.097	3.788	4.220	2.999	6.075	3.498	2.687	5.206	2.267	4.194	4.502	1.370	1.894	3.917	5.151	3.732	4.536	1.798	3.739	5.529	4.959	6.261	9.520	1.702	1.129	2.802	1.401	1.156	1.364	1.353	2.015	0.156	1.712	1.245	5.293
5032	chr20	60807138	60832536	+	0	NA	intron (NM_014835, intron 1 of 13)	intron (NM_014835, intron 1 of 13)	6296	NM_001278649	9885	Hs.473254	NM_014835	ENSG00000130703	OSBPL2	DFNA67|DNFA67|ORP-2|ORP2	oxysterol binding protein like 2	protein-coding	1.051	1.974	1.270	0.643	0.489	0.356	0.821	0.217	0.121	0.321	0.260	0.425	11.313	0.227	0.130	1.323	nan	0.452	0.592	0.963	0.961	1.197	0.514	1.643	1.521	0.708	0.986	1.219	1.613	0.683	0.520	0.652	0.991	0.185	0.255	0.452	0.683	1.258	0.797	0.656	3.670	0.042	0.314	0.821	0.425	0.073	0.962	0.258	0.160
3042	chr16	4816068	4827864	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-4747	NM_021646	26048	Hs.513316	NM_021646	ENSG00000103199	ZNF500	ZKSCAN18|ZSCAN50	zinc finger protein 500	protein-coding	1.847	nan	1.540	1.526	1.130	0.618	0.662	0.456	0.232	0.319	0.269	1.010	3.165	0.853	0.076	0.681	0.953	0.561	1.086	1.145	1.136	nan	0.754	1.895	2.013	1.216	nan	1.745	2.106	2.318	2.098	0.507	0.789	1.022	1.105	2.567	7.741	1.373	0.810	0.414	0.703	0.233	0.358	0.662	1.010	0.313	0.680	0.193	3.031
5689	chr3	176346312	176353346	+	0	NA	intron (NR_109968, intron 2 of 2)	L2|LINE|L2	3491	NR_109968	100505547	Hs.253350	NR_109968	ENSG00000223715	LINC01208	-	long intergenic non-protein coding RNA 1208	ncRNA	1.015	1.158	0.726	0.112	0.448	0.291	0.083	0.164	0.159	0.120	0.180	0.102	0.266	0.077	0.145	3.318	3.785	11.762	3.038	0.322	0.396	2.195	0.882	2.592	2.564	0.563	0.873	0.341	0.363	0.616	0.251	5.452	8.552	0.065	0.178	0.353	0.587	0.217	0.187	0.054	0.089	0.027	0.056	0.083	0.102	0.029	0.073	8.760	0.088
1214	chr10	112616662	112634485	+	0	NA	Intergenic	Intergenic	5089	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA	2.527	nan	4.272	1.163	5.969	3.026	0.653	1.970	0.217	0.543	0.319	1.830	2.310	0.772	0.108	1.937	2.806	1.519	1.976	1.272	1.108	3.939	1.476	1.195	1.204	1.598	2.006	3.821	4.633	1.419	1.348	0.928	1.463	1.249	1.283	1.687	2.975	1.706	0.894	1.366	1.904	0.370	1.138	0.653	1.830	0.524	1.371	0.977	1.104
5510	chr3	123030634	123036162	+	0	NA	intron (NM_183357, intron 11 of 20)	intron (NM_183357, intron 11 of 20)	101791	NM_001199642	111	Hs.593292	NM_183357	ENSG00000173175	ADCY5	AC5|FDFM	adenylate cyclase 5	protein-coding	1.099	nan	2.008	3.409	0.618	0.198	0.462	0.122	0.029	1.188	0.416	0.152	3.311		0.058	0.426	0.524	0.154	0.227	5.981	6.162	15.643	5.262	0.275	0.347	0.260	nan	2.577	3.122	0.809	0.316	0.207	0.302	2.456	1.876	0.348	0.489	2.964	1.914	4.586	5.052	0.447	0.200	0.462	0.152	0.087		0.072	0.044
1660	chr11	115110096	115141737	+	0	NA	intron (NM_001098517, intron 1 of 8)	intron (NM_001098517, intron 1 of 8)	-78380	NR_135108	105369509	Hs.736064	NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA	0.904	1.164	0.782	0.754	3.509	1.838	0.436	0.047	0.051	1.355	0.906	1.715	0.836	0.058	0.126	1.337	nan	0.284	0.443	1.703	1.799	2.944	1.967	0.129	0.131	1.873	nan	1.641	2.496	0.584	0.327	2.103	3.151	1.535	2.485	0.607	1.606	2.041	1.113	0.186	1.539	0.466	0.541	0.436	1.715	0.179	0.492	3.225	0.736
7082	chr6	159316144	159346417	+	0	NA	3' UTR (NM_001302839, exon 3 of 3)	3' UTR (NM_001302839, exon 3 of 3)	21661	NM_001195032	100130967	Hs.32804	NM_001195032		C6orf99	yR211F11.1	chromosome 6 open reading frame 99	protein-coding	nan	0.778	0.889	0.236	0.374	0.137	0.364	0.106	0.101	0.094	0.111	0.242	0.487	0.068	0.133	0.665	0.463	0.409	0.646	0.627	nan	6.222	2.285	2.851	3.125	0.333	0.576	0.461	0.650	0.703	0.463	0.258	0.380	0.327	0.386	0.306	nan	0.529	0.388	0.133	0.160	0.069	0.044	0.364	0.242	0.103	0.111	0.072	0.176
6177	chr5	12009874	12024627	+	0	NA	Intergenic	Intergenic	-113095	NM_001288717	1501	Hs.314543	NM_001332	ENSG00000169862	CTNND2	GT24|NPRAP	catenin delta 2	protein-coding	nan	nan	nan	0.220	0.166	0.022	0.286	0.198	0.283	0.236	0.282	0.049	nan	0.037	0.085	0.451	0.199	0.195	0.315	0.273	0.298	0.158	0.093	0.126	0.143	nan	6.325	0.234	0.352	1.774	1.172	0.113	0.211	0.089	0.099	0.088	nan	0.556	0.612	0.023	0.103	0.007		0.286	0.049	0.468	0.021	0.040	0.033
3887	chr18	68513020	68520371	+	0	NA	Intergenic	Intergenic	-198602	NM_001278515	220158	Hs.448217	NM_178506		GTSCR1	-	Gilles de la Tourette syndrome chromosome region, candidate 1 (non-protein coding)	protein-coding	0.484	0.663	0.606	0.286	0.292	0.088	0.327	0.031	0.110	0.427	0.256	2.689	0.292		0.123	0.320	0.146	0.232	0.312	1.203	0.963	0.552	0.146	0.466	nan	0.093	nan	0.411	0.495	0.261	0.108	0.119	0.157	0.160	0.240	0.160	0.223	5.426	2.676	0.083	0.084	0.025	0.011	0.327	2.689		0.097	0.050	0.067
5875	chr4	41200430	41219869	+	0	NA	intron (NM_001166050, intron 1 of 17)	intron (NM_001166050, intron 1 of 17)	6486	NM_001166050	323	Hs.479602	NM_004307	ENSG00000163697	APBB2	FE65L|FE65L1	amyloid beta precursor protein binding family B member 2	protein-coding	1.227	nan	nan	1.456	1.084	0.561	1.070	1.492	0.182	0.792	0.412	1.137	1.898	4.095	0.156	2.285	2.646	3.060	3.821	1.226	1.006	3.397	1.399	1.047	1.083	0.309	0.448	1.506	1.762	1.147	0.960	1.262	2.224	0.939	1.177	0.702	1.345	2.440	1.558	0.441	1.057	0.249	1.173	1.070	1.137	0.140	0.482	0.601	0.262
5146	chr21	43932826	43960788	+	0	NA	intron (NM_018964, intron 4 of 20)	intron (NM_018964, intron 4 of 20)	12844	NM_001320537	54020	Hs.547009	NM_018964	ENSG00000160190	SLC37A1	G3PP	solute carrier family 37 member 1	protein-coding	nan	1.325	1.594	3.123	2.836	1.559	0.672	0.075	0.081	1.481	0.683	2.684	2.346	0.249	0.078	2.536	3.411	2.032	3.026	2.796	2.584	nan	0.482	1.258	1.229	0.129	nan	4.162	5.247	0.802	0.628	2.202	3.178	1.826	2.076	0.476	1.222	3.187	1.584	1.230	1.110	0.279	0.241	0.672	2.684	0.388	1.307	2.046	0.394
992	chr10	2650283	2674641	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-118808	NR_136146	105376351	Hs.343482	NR_136146		LOC105376351	-	uncharacterized LOC105376351	ncRNA	0.332	0.549	0.521	0.049	2.483	1.035	0.584	0.171	0.140	0.172	0.114	3.578	0.401	0.054	0.065	0.411	0.234	0.151	0.178	2.532	2.751	0.178	0.117	0.038	0.066	0.138	0.183	0.316	0.351	0.236	0.124	0.301	0.570	0.026	0.048	0.405	0.543	1.011	0.502	0.012	0.610	0.004	0.189	0.584	3.578	0.040	0.021	0.428	0.056
1954	chr12	53885017	53896517	+	0	NA	intron (NM_006301, intron 1 of 14)	MIRb|SINE|MIR	2677	NM_006301	7786	Hs.713539	NM_006301	ENSG00000139625	MAP3K12	DLK|MEKK12|MUK|ZPK|ZPKP1	mitogen-activated protein kinase kinase kinase 12	protein-coding	nan	2.675	1.794	2.129	2.776	1.412	3.153	1.589	0.295	1.254	0.604	2.658	8.245	3.210	0.103	nan	4.475	2.889	4.068	5.328	nan	7.584	3.494	3.523	3.674	2.263	nan	5.140	nan	4.373	4.345	1.093	1.983	4.466	5.218	2.381	3.708	3.452	1.638	1.014	3.071	1.040	0.879	3.153	2.658	1.149	1.871	0.802	0.827
2843	chr15	36866380	36917330	+	0	NA	intron (NM_001290232, intron 1 of 10)	intron (NM_001290232, intron 1 of 10)	4785	NM_032499	84529	Hs.48348	NM_032499	ENSG00000186073	C15orf41	HH114	chromosome 15 open reading frame 41	protein-coding	0.942	nan	nan	0.209	0.807	0.454	0.254	0.385	0.105	0.852	0.815	0.301	0.536	3.483	0.161	1.419	1.063	0.871	1.175	0.439	0.482	1.324	0.569	0.511	0.550	1.298	1.532	0.482	0.661	0.851	0.397	1.392	1.693	1.730	1.996	0.370	0.690	0.766	0.596	0.159	0.151	0.640	0.319	0.254	0.301	0.074	0.149	1.504	0.184
7127	chr7	1979751	1992671	+	0	NA	intron (NM_001013836, intron 16 of 18)	intron (NM_001013836, intron 16 of 18)	-6025	NM_001304525	8379	Hs.654838	NM_003550	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient like 1	protein-coding	1.358	1.041	1.365	1.187	0.339	0.139	0.734	0.296	0.038	0.220	0.207	0.555	nan	0.163	0.102	0.544	0.793	0.233	nan	1.229	1.204	nan	0.526	0.695	0.804	0.384	0.789	nan	3.744	0.399	0.393	0.360	0.358	0.353	0.438	0.457	0.629	0.889	0.593	1.161	0.355	0.088	0.198	0.734	0.555	0.098	2.528	0.077	0.162
3391	chr17	37885507	37898203	+	0	NA	Intergenic	AluSg|SINE|Alu	-2299	NM_001330207	2886	Hs.86859	NM_005310	ENSG00000141738	GRB7	-	growth factor receptor bound protein 7	protein-coding	nan	2.907	1.997	2.206	3.747	2.007	1.820	0.553	0.190	3.481	1.266	3.752	9.205	0.888	0.118	1.972	4.025	1.754	3.018	nan	4.984	4.177	1.808	10.866	11.676	0.528	0.833	6.345	8.690	nan	0.911	0.927	1.857	1.578	1.639	0.533	0.990	1.427	0.951	2.681	2.742	0.503	0.814	1.820	3.752	0.819	1.118	1.852	0.214
5418	chr3	82077630	82101271	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-278500	NM_000158	2632	Hs.436062	NM_000158	ENSG00000114480	GBE1	APBD|GBE|GSD4	1,4-alpha-glucan branching enzyme 1	protein-coding	nan	0.549	1.018	0.147	0.382	0.197	0.187	0.038	0.020	0.179	0.262	0.268	0.287	0.018	0.084	0.216	0.136	0.191	0.261	0.747	0.954	5.472	2.025	0.092	0.133	0.765	0.889	0.279	0.291	0.608	0.414	0.117	0.296	1.002	1.029	0.264	0.514	0.807	0.421	0.007	0.158	0.383	0.177	0.187	0.268	0.021	0.088	0.105	0.064
2973	chr15	85451537	85459208	+	0	NA	intron (NM_001321722, intron 9 of 18)	intron (NM_001321722, intron 9 of 18)	27480	NM_001287761	9154	Hs.459187	NM_004213	ENSG00000156222	SLC28A1	CNT1|HCNT1	solute carrier family 28 member 1	protein-coding	0.943	nan	1.460	0.366	1.529	1.196	1.130	1.654	0.503	0.285	0.278	0.917	1.199	0.042	0.121	0.409	1.252	0.595	1.736	0.539	0.527	2.746	1.647	0.232	0.194	0.408	0.570	1.489	2.263	0.629	0.557	0.456	0.604	0.399	0.435	0.292	0.326	1.047	0.723	0.259	0.266	0.049	0.574	1.130	0.917	0.228	5.179	0.156	0.032
2999	chr15	94798037	94804275	+	0	NA	Intergenic	AluSx1|SINE|Alu	-40274	NM_018349	55784	Hs.33368	NM_018349	ENSG00000140563	MCTP2	-	multiple C2 and transmembrane domain containing 2	protein-coding	nan	nan	nan	0.028	0.307	0.026	0.150	0.072	0.102	0.257	0.026	0.115	0.346		0.086	0.441	0.086	7.606	3.433	0.181	0.228	nan	0.136	0.702	0.748	0.151	0.203	0.250	0.240	nan	0.174	0.213	0.256	0.079	0.091	0.106	nan	0.320	0.354	0.027	0.058	0.015	0.064	0.150	0.115	0.016	0.016	0.080	
4602	chr2	175109185	175114876	+	0	NA	intron (NM_001328688, intron 1 of 10)	AluSz6|SINE|Alu	1368	NM_001328688	29789	Hs.157351	NM_013341	ENSG00000138430	OLA1	DOC45|GBP45|GTBP9|GTPBP9|PTD004	Obg like ATPase 1	protein-coding	3.675	1.907	3.283	2.151	2.618	1.775	2.715	1.370	0.141	1.239	0.891	2.385	4.838	1.467	0.150	2.700	2.534	3.153	4.593	2.905	2.514	3.099	1.298	6.450	6.229	3.715	4.281	10.798	16.847	3.851	4.625	1.797	2.877	1.170	0.990	4.499	4.153	1.866	0.981	1.350	0.904	0.116	0.690	2.715	2.385	0.978	0.821	0.889	1.551
3158	chr16	67949504	67971787	+	0	NA	intron (NM_006742, intron 2 of 2)	intron (NM_006742, intron 2 of 2)	5133	NM_001907	1506	Hs.654546	NM_001907	ENSG00000141086	CTRL	CTRL1	chymotrypsin like	protein-coding	nan	nan	1.674	2.221	1.159	0.661	1.035	0.508	0.146	0.671	0.333	1.590	5.088	0.642	0.087	1.091	1.485	0.527	0.798	2.983	3.395	1.831	0.642	1.548	1.763	0.607	nan	3.440	4.248	1.153	1.218	0.592	0.917	0.519	0.498	0.666	1.156	2.757	1.468	3.090	2.556	0.098	0.283	1.035	1.590	0.305	2.136	0.283	0.244
7990	chr8	144093900	144104572	+	0	NA	promoter-TSS (NM_001127213)	promoter-TSS (NM_001127213)	571	NR_026913	100133669	Hs.195309	NR_026913		LOC100133669	-	uncharacterized LOC100133669	ncRNA	3.578	1.368	nan	0.085	1.288	0.766	1.382	2.251	0.256	0.426	0.223	0.169	3.831	0.520	0.056	0.680	0.978	0.204	0.554	nan	2.077	nan	0.238	0.119	0.151	1.106	1.687	0.071	0.083	2.035	2.749	1.146	1.845	1.396	0.905	1.368	1.600	1.531	0.878	2.023	0.377	0.240	0.082	1.382	0.169	0.807	0.169	0.571	0.373
8388	chrX	53460365	53469749	+	0	NA	Intergenic	Intergenic	-3734	NM_004493	3028	Hs.171280	NM_004493	ENSG00000072506	HSD17B10	17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1	hydroxysteroid 17-beta dehydrogenase 10	protein-coding	2.356	2.710	2.481	1.355	2.162	1.003	0.449	0.548	0.069	0.557	0.417	2.137	4.259	0.554	0.051	0.264	0.429	0.903	1.373	2.400	2.474	2.499	0.531	1.145	1.358	1.272	1.814	4.511	5.132	3.256	2.938	0.751	1.342	2.942	3.381	1.243	2.077	2.123	0.906	0.944	0.445	0.703	0.431	0.449	2.137	0.600	4.042	0.485	0.711
2767	chr14	100901483	100922428	+	0	NA	intron (NM_024515, intron 2 of 6)	intron (NM_024515, intron 2 of 6)	69122	NM_024515	79446	Hs.497600	NM_024515	ENSG00000176473	WDR25	C14orf67	WD repeat domain 25	protein-coding	2.117	1.380	1.535	0.170	0.873	0.482	4.296	0.326	0.115	0.308	0.130	0.557	1.388	0.140	0.098	0.278	0.366	0.504	0.944	0.952	1.272	0.611	0.221	0.165	0.169	1.422	1.788	2.154	1.928	2.163	2.257	0.387	0.736	0.323	0.404	0.544	1.037	2.865	1.416	2.743	0.484	0.054	1.343	4.296	0.557	1.535	0.301	0.467	0.337
5685	chr3	174865719	174874147	+	0	NA	intron (NM_207015, intron 2 of 13)	intron (NM_207015, intron 2 of 13)	-36901	NR_046390	100862679	Hs.148810	NR_046390	ENSG00000230292	NAALADL2-AS3	-	NAALADL2 antisense RNA 3	ncRNA	1.389	2.943	1.652	1.866	3.220	1.797	0.801	0.207	0.096	0.788	0.391	1.799	1.672	0.025	0.089	0.752	0.490	5.464	5.876	1.295	1.379	9.766	6.949	4.114	4.128	1.039	1.430	3.557	3.192	0.881	0.351	0.077	0.324	3.694	6.729	0.432	0.940	0.877	0.607	0.365	0.158	1.052	0.533	0.801	1.799	0.053	0.446	0.050	0.256
6769	chr6	42738146	42760886	+	0	NA	intron (NM_001318819, intron 1 of 13)	intron (NM_001318819, intron 1 of 13)	-1718	NR_134654	401261	Hs.656652	NM_001004322		LOC401261	-	uncharacterized LOC401261	ncRNA	3.426	2.361	2.678	4.160	4.173	2.319	4.560	2.401	0.305	1.613	0.873	7.135	4.894	2.816	0.170	4.123	4.029	3.514	3.892	6.111	6.136	7.365	5.247	5.391	5.209	2.293	2.907	6.664	nan	4.454	4.345	2.487	3.742	4.334	4.540	3.405	3.312	2.257	1.202	3.057	2.918	1.219	1.869	4.560	7.135	0.717	1.334	1.125	1.337
3667	chr18	12391185	12421570	+	0	NA	Intergenic	MIRb|SINE|MIR	-1518	NM_001142405	10650	Hs.514718	NM_006553	ENSG00000141391	PRELID3A	C18orf43|HFL-EDDG1|SLMO1	PRELI domain containing 3A	protein-coding	1.637	1.630	1.591	1.320	1.139	0.634	0.693	0.326	0.196	0.527	0.269	1.901	1.684	1.013	0.148	2.096	2.160	0.556	0.939	2.869	2.690	5.370	1.907	1.881	1.837	0.880	1.380	0.965	1.677	1.978	2.251	0.683	1.064	1.765	1.721	1.977	1.991	2.560	1.322	0.934	0.343	0.351	0.824	0.693	1.901	0.442	0.472	0.423	1.138
7509	chr7	139474328	139485633	+	0	NA	intron (NM_001166254, intron 1 of 14)	intron (NM_001166254, intron 1 of 14)	1933	NM_001166254	6916	Hs.520757	NM_001061	ENSG00000059377	TBXAS1	BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS	thromboxane A synthase 1	protein-coding	nan	nan	nan	0.937	1.241	0.596	0.968	0.828	0.200	1.671	0.746	3.754	2.819	1.132	0.137	2.686	3.618	2.589	2.577	2.695	2.230	nan	0.825	4.035	3.862	1.003	nan	1.348	2.101	nan	2.116	1.718	4.314	1.931	1.338	2.314	2.884	3.172	nan	1.212	2.207	0.328	0.538	0.968	3.754	0.421	1.339	1.149	0.709
1859	chr12	19139601	19153433	+	0	NA	Intergenic	Intergenic	-136109	NM_019012	54477	Hs.188614	NM_019012	ENSG00000052126	PLEKHA5	PEPP-2|PEPP2	pleckstrin homology domain containing A5	protein-coding	0.847	1.485	1.004	0.379	0.297	0.115	0.278	0.113	0.047	0.113	0.148	0.052	1.480	0.047	0.114	0.189	0.099	0.154	0.247	nan	0.806	0.873	0.230	0.290	0.264	0.763	1.078	0.404	0.333	0.385	0.191	0.098	0.192	0.049	0.054	0.514	1.222	0.780	0.436	9.087	0.090		0.366	0.278	0.052	0.007	0.036	0.014	0.233
8171	chr9	81215589	81228002	+	0	NA	Intergenic	L1MC1|LINE|L1	309804	NM_021154	29968	Hs.494261	NM_021154	ENSG00000135069	PSAT1	EPIP|NLS2|PSA|PSAT|PSATD	phosphoserine aminotransferase 1	protein-coding	1.075	0.882	0.904	0.752	5.314	2.948	4.391	0.096	0.091	0.530	0.236	2.617	1.244	0.113	0.078	0.306	0.272	0.281	0.275	3.930	4.282	5.637	1.636	0.113	0.108	0.249	0.257	1.771	1.547	0.378	0.269	0.166	0.230	0.890	0.500	0.492	1.080	1.070	0.824	0.139	1.141	0.107	0.272	4.391	2.617	0.564	0.066	0.101	0.336
3782	chr18	45720381	45764119	+	0	NA	intron (NM_001318841, intron 2 of 4)	MER4D1|LTR|ERV1	-78570	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding	nan	2.008	0.803	1.439	0.484	0.238	1.416	0.076	0.056	0.433	0.134	1.745	3.831	0.030	0.068	0.440	0.476	0.368	0.514	3.931	4.321	3.274	1.433	0.136	0.169	0.195	0.322	4.294	3.184	0.620	0.514	0.196	0.265	0.828	1.199	0.199	nan	4.884	2.564	3.772	1.218	0.177	0.089	1.416	1.745	0.065	1.208	0.066	0.104
7835	chr8	101954651	101968436	+	0	NA	intron (NM_003406, intron 1 of 5)	intron (NM_003406, intron 1 of 5)	1256	NM_001135702	7534	Hs.492407	NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding	6.441	nan	nan	7.138	7.344	3.910	3.128	2.900	0.375	1.624	0.684	7.332	16.175	2.433	0.105	2.611	4.059	5.002	7.726	10.449	8.409	nan	3.218	14.151	14.945	2.418	nan	11.247	nan	nan	4.190	2.509	5.777	5.986	5.513	3.859	nan	2.566	1.444	6.589	6.175	1.583	3.408	3.128	7.332	0.875	3.224	2.998	1.691
1048	chr10	16532042	16540189	+	0	NA	intron (NM_001261837, intron 4 of 4)	intron (NM_001261837, intron 4 of 4)	27889	NM_001010908	389941	Hs.676792	NM_001010908	ENSG00000165985	C1QL3	C1QTNF13|C1ql|CTRP13|K100	complement C1q like 3	protein-coding	nan	1.043	1.360	0.537	1.040	0.570		0.169	0.101	0.231	0.193	0.323	0.323	0.041	0.068	0.432	0.343	0.295	0.323	0.480	0.539	11.975	4.402	0.112	0.147	0.389	0.454	0.377	0.443	1.597	1.562	0.078	0.108	1.926	3.666	2.034	5.527	1.848	0.857	0.021	0.219	0.645	0.303		0.323	0.154	0.028	0.085	2.123
7350	chr7	81230479	81271862	+	0	NA	intron (NR_126026, intron 2 of 8)	intron (NR_126026, intron 2 of 8)	4362	NR_126026	100128317	Hs.571267	NR_126025	ENSG00000233491	LOC100128317	-	uncharacterized LOC100128317	ncRNA	0.777	0.632	0.626	0.087	0.250	0.101	0.143	1.052	0.109	0.133	0.177	0.118	0.198	0.474	0.179	0.408	0.289	0.164	0.211	0.326	0.381	0.160	0.099	0.170	0.122	7.806	8.486	0.305	0.269	0.451	0.151	0.180	0.292	0.122	0.197	0.263	nan	0.560	0.524	0.054	0.077	0.044	0.060	0.143	0.118	0.009	1.198	0.048	0.069
1061	chr10	21157965	21183653	+	0	NA	intron (NM_006393, intron 4 of 27)	intron (NM_006393, intron 4 of 27)	15722	NM_006393	10529	Hs.5025	NM_006393	ENSG00000078114	NEBL	LASP2|LNEBL	nebulette	protein-coding	0.827	1.107	0.541	0.728	0.468	0.231	0.179	0.137	0.156	0.286	0.144	0.268	0.242	0.106	0.103	0.548	0.452	0.325	0.685	0.354	0.453	8.261	2.687	0.150	0.144	0.125	0.249	0.543	0.717	0.289	0.134	0.143	0.248	1.316	1.963	0.160	0.346	1.956	0.771	0.013	0.508	0.493	0.097	0.179	0.268	0.076	0.720	0.058	0.038
5039	chr20	61396395	61428519	+	0	NA	Intergenic	Intergenic	-4249	NR_046225	100652730	Hs.254951	NR_046224		LINC00659	-	long intergenic non-protein coding RNA 659	ncRNA	1.514	1.638	1.353	0.301	0.806	0.340	0.810	0.275	0.145	0.332	0.175	0.804	3.064	0.780	0.114	2.359	nan	0.378	0.662	2.584	2.102	1.152	0.371	0.960	1.007	1.036	1.531	0.699	0.995	3.710	4.438	0.875	1.279	0.561	0.544	1.141	2.140	1.128	0.755	3.959	1.343	0.116	0.300	0.810	0.804	2.105	0.974	0.576	0.674
3792	chr18	47108697	47148853	+	0	NA	Intergenic	MER39B|LTR|ERV1	40374	NM_001308006	9388	Hs.465102	NM_006033	ENSG00000101670	LIPG	EDL|EL|PRO719	lipase G, endothelial type	protein-coding	nan	0.800	0.878	0.210	0.248	0.172	0.753	0.071	0.092	0.067	0.102	0.151	0.612	0.043	0.076	0.554	0.488	2.012	6.885	0.580	0.675	4.498	1.135	0.177	0.194	0.250	0.459	0.300	0.364	0.540	0.374	0.319	0.465	0.436	0.635	0.203	nan	0.908	0.885	0.179	0.121	0.057	0.129	0.753	0.151	0.288	0.132	0.215	0.079
2054	chr12	83073551	83085757	+	0	NA	Intergenic	Intergenic	-1280	NM_001320322	160335	Hs.577775	NM_152588	ENSG00000179104	TMTC2	IBDBP1	transmembrane and tetratricopeptide repeat containing 2	protein-coding	1.646	1.421	1.448	0.998	1.332	0.932	0.743	2.471	0.315	0.526	0.377	0.764	5.302	0.314	0.088	0.541	0.668	1.674	2.557	4.500	3.305	1.481	0.537	2.633	2.907	3.369	4.244	3.141	5.184	0.660	0.633	0.319	0.883	1.530	1.471	0.605	0.905	1.618	0.965	0.093	1.443	0.364	0.412	0.743	0.764	0.589	0.617	0.315	0.171
2785	chr14	104651284	104673840	+	0	NA	Intergenic	Intergenic	57502	NM_015656	26153	Hs.134970	NM_015656	ENSG00000066735	KIF26A	-	kinesin family member 26A	protein-coding	1.097	0.639	0.497	0.074	0.173	0.092	0.102	0.087	0.043	0.116	0.143	0.694	2.817	0.044	0.076	1.038	1.643	0.965	0.729	1.375	1.273	0.197	0.106	0.058	0.076	3.018	3.362	0.740	1.123	1.327	1.213	1.236	1.783	0.422	0.420	0.327	0.468	1.974	1.063	3.947	0.291	0.079	0.024	0.102	0.694	0.301	1.670	1.037	0.258
3635	chr18	922627	937225	+	0	NA	Intergenic	Intergenic	24729	NM_001117	116	Hs.531719	NM_001117	ENSG00000141433	ADCYAP1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	1.102	1.913	0.838	1.965	0.213	0.209	0.077	0.107	0.076	0.172	0.158	0.433	nan	0.022	0.105	0.336	0.132	0.179	0.228	1.041	0.986	nan	0.972	0.207	0.153	0.250	nan	2.552	2.531	nan	0.247	0.038	0.077	0.405	0.620	0.212	nan	nan	1.373	6.869	0.736	0.072	0.065	0.077	0.433	0.060	0.587	0.007	0.075
3224	chr16	90054259	90067899	+	0	NA	intron (NR_003228, intron 10 of 12)	intron (NR_003228, intron 10 of 12)	15450	NM_024043	79007	Hs.301394	NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding	nan	nan	nan	0.595	0.780	0.306	1.433	0.325	0.070	0.173	0.118	0.492	0.580	0.795	0.090	nan	0.756	1.593	2.506	0.716	0.691	5.578	0.780	nan	6.791	0.464	nan	0.618	1.306	nan	0.637	0.426	0.378	1.414	6.179	2.185	1.090	nan	0.765	0.257	0.305	0.091	0.476	1.433	0.492	0.532	0.957	0.102	0.164
1555	chr11	82995257	82998245	+	0	NA	5' UTR (NM_001286117, exon 1 of 9)	5' UTR (NM_001286117, exon 1 of 9)	699	NM_001286117	60492	Hs.368866	NM_021825	ENSG00000137500	CCDC90B	MDS011|MDS025	coiled-coil domain containing 90B	protein-coding	5.740	3.508	4.054	6.791	4.464	2.783	2.761	3.250	0.213	2.413	1.069	3.199	13.584	6.571	0.174	8.292	8.742	6.864	7.509	9.783	9.244	12.633	5.943	25.599	27.494	6.273	7.417	7.284	10.045	7.305	6.247	5.936	7.292	9.252	12.495	4.770	5.525	4.658	2.244	4.788	3.893	1.925	2.230	2.761	3.199	0.874	2.731	2.971	2.849
2870	chr15	47963097	47970847	+	0	NA	intron (NM_001198999, intron 4 of 19)	intron (NM_001198999, intron 4 of 19)	-43714	NM_153619	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding	1.401	1.122	nan	2.036	4.651	2.069	0.280	0.059	0.047	0.937	0.475	6.448	3.653	0.014	0.065	0.235	0.130	0.111	0.187	1.482	1.236	5.439	1.724	0.110	0.134	1.168	nan	2.722	2.846	0.985	0.823	0.122	0.180	2.946	3.744	0.969	3.451	3.022	1.355	0.050	0.469	1.018	0.567	0.280	6.448	0.352	1.259	0.025	1.536
4337	chr2	50755880	50767944	+	0	NA	intron (NM_001135659, intron 11 of 23)	intron (NM_001135659, intron 11 of 23)	161488	NR_130470	103504737		NR_130470	ENSG00000216191	MIR8485	hsa-mir-8485	microRNA 8485	ncRNA	1.349	nan	2.349	0.168	0.352	0.186	0.395	0.143	0.068	0.362	0.346	0.405	0.572	0.036	0.122	0.463	0.276	0.258	0.280	0.778	1.016	0.596	0.245	0.357	0.347	4.235	5.207	0.722	0.728	4.517	3.018	0.142	0.176	1.438	1.586	0.971	1.949	0.694	0.550	0.119	0.194	0.436	0.090	0.395	0.405	1.353	0.227	0.041	0.790
2859	chr15	43799821	43810954	+	0	NA	Intergenic	AluSp|SINE|Alu	-2680	NM_005657	7158	Hs.440968	NM_005657	ENSG00000067369	TP53BP1	53BP1|TDRD30|TP53|p202|p53BP1	tumor protein p53 binding protein 1	protein-coding	2.179	1.235	nan	0.807	1.448	0.782	4.292	1.417	0.217	0.822	0.566	1.603	3.093	0.467	0.090	1.229	1.888	0.660	0.844	2.512	2.175	3.877	0.876	0.556	0.676	1.694	nan	2.396	3.436	4.556	4.247	1.006	1.166	1.803	2.417	2.879	4.006	2.175	1.243	0.728	2.526	0.445	0.576	4.292	1.603	1.511	1.780	0.825	0.904
6764	chr6	41485318	41556863	+	0	NA	intron (NM_001012426, intron 1 of 16)	intron (NM_001012426, intron 1 of 16)	-4731	NR_126415	101060264	Hs.571099	NR_126415	ENSG00000234753	FOXP4-AS1	-	FOXP4 antisense RNA 1	ncRNA	1.424	1.094	1.882	1.783	1.050	0.542	0.913	0.332	0.098	0.355	0.200	1.677	1.499	0.297	0.107	1.040	1.779	0.525	0.746	1.372	1.453	1.914	0.748	0.717	0.749	0.481	0.783	4.706	nan	0.864	0.795	1.083	1.984	1.562	1.545	0.581	1.499	1.731	0.934	0.493	0.598	0.552	0.252	0.913	1.677	0.292	0.752	1.129	0.508
999	chr10	3891564	4015841	+	0	NA	Intergenic	Intergenic	77560	NR_134490	105376365	Hs.460114	NR_134490	ENSG00000230573	LOC105376365	-	uncharacterized LOC105376365	ncRNA	0.475	0.980	0.631	0.250	0.591	0.361	0.512	0.952	0.217	0.222	0.104	0.374	0.489	5.211	0.182	0.382	0.302	0.435	0.829	0.307	0.298	1.897	1.168	0.137	0.138	0.138	0.244	0.532	0.711	0.178	0.092	0.190	0.240	0.199	0.360	0.183	0.370	0.593	0.442	0.014	0.124	0.025	0.023	0.512	0.374	0.027	0.063	0.082	0.084
7706	chr8	62322200	62328630	+	0	NA	intron (NM_173519, intron 3 of 5)	intron (NM_173519, intron 3 of 5)	124890	NM_173519	157807	Hs.591874	NM_173519	ENSG00000177182	CLVS1	CRALBPL|RLBP1L1	clavesin 1	protein-coding	1.581	0.646	0.728	0.094	0.311	0.175	0.167	0.045	0.074	0.098	0.104	0.074	0.308	0.017	0.102	0.366	0.318	0.197	0.414	0.577	0.566	0.335	0.170	0.056	0.069	1.013	nan	0.122	0.211	nan	1.008	0.186	0.347	0.259	0.227	0.417	0.760	1.136	1.012	0.053	0.041	0.074	0.175	0.167	0.074	7.064	0.032	0.030	0.087
2169	chr12	118957449	118976626	+	0	NA	Intergenic	AluSx|SINE|Alu	152679	NM_022491	64426	Hs.416630	NM_022491	ENSG00000111707	SUDS3	SAP45|SDS3	SDS3 homolog, SIN3A corepressor complex component	protein-coding	nan	nan	0.428	0.059	0.271	0.142	0.556	0.043	0.059	0.025	0.115	0.304	0.822	0.023	0.099	0.708	0.610	0.168	0.156	nan	nan	nan	1.284	0.138	0.116	0.174	0.310	nan	nan	0.340	0.163	0.281	0.753	0.091	0.082	0.229	0.382	nan	0.758	0.121	0.933	0.015	0.099	0.556	0.304	0.131	0.042	0.979	0.071
4211	chr2	9893336	9914654	+	0	NA	Intergenic	Intergenic	-79576	NM_001318977	9014	Hs.584833	NM_005680	ENSG00000115750	TAF1B	MGC:9349|RAF1B|RAFI63|SL1|TAFI63	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein-coding	1.196	1.149	1.012	0.400	0.286	0.263	1.593	0.115	0.084	0.737	0.254	0.624	0.704	0.068	0.093	0.667	1.019	0.338	0.477	1.255	1.156	1.990	0.566	0.233	0.258	0.214	0.503	2.387	2.414	0.722	0.488	0.418	0.540	0.605	0.463	0.442	0.740	1.708	1.181	1.759	4.998	0.111	0.246	1.593	0.624	0.279	0.591	0.137	0.235
1315	chr11	12709817	12722817	+	0	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	20348	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding	1.278	nan	1.557	3.728	1.028	0.392	0.981	2.374	0.198	1.678	0.794	2.451	4.546	0.178	0.085	nan	1.131	0.642	1.458	2.401	2.418	1.141	0.407	0.772	0.775	4.424	nan	4.029	4.391	0.804	0.430	1.140	1.848	2.501	3.020	0.568	1.333	3.041	nan	3.131	0.562	0.535	0.236	0.981	2.451	0.127	0.809	1.250	0.143
6983	chr6	135168829	135204830	+	0	NA	Intergenic	Intergenic	84431	NM_170771	64577	Hs.486520	NM_022568	ENSG00000118514	ALDH8A1	ALDH12|DJ352A20.2	aldehyde dehydrogenase 8 family member A1	protein-coding	0.831	0.757	0.906	0.259	0.237	0.093	0.402	0.179	0.111	0.236	0.110	0.138	0.453	0.760	0.132	0.408	0.313	0.243	0.340	0.470	0.517	nan	0.843	0.257	0.259	0.335	0.525	0.965	0.902	0.565	0.288	0.142	0.208	1.037	1.531	0.405	nan	0.809	0.488	0.099	0.111	0.098	0.069	0.402	0.138	0.128	0.601	0.027	0.220
4599	chr2	174217909	174225865	+	0	NA	intron (NM_145810, intron 1 of 8)	intron (NM_145810, intron 1 of 8)	2326	NM_145810	83879	Hs.470654	NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding	4.547	2.302	2.550	2.427	4.549	2.265	3.402	1.994	0.289	1.488	0.836	3.020	6.181	4.968	0.122	4.074	3.837	3.578	3.683	1.948	2.499	3.994	2.951	4.688	4.799	3.126	4.234	5.684	8.716	4.701	5.698	3.648	5.349	3.902	4.051	7.692	6.671	0.740	0.617	6.783	1.194	1.227	2.252	3.402	3.020	0.769	0.680	1.169	1.946
3810	chr18	48720231	48725815	+	0	NA	exon (NM_016626, exon 1 of 2)	exon (NM_016626, exon 1 of 2)	1028	NM_016626	51320	Hs.465144	NM_016626	ENSG00000176624	MEX3C	BM-013|MEX-3C|RKHD2|RNF194	mex-3 RNA binding family member C	protein-coding	nan	4.011	6.210	4.593	4.270	2.010	10.665	1.823	0.258	1.279	0.784	6.597	10.841	4.047	0.124	7.998	9.277	8.996	12.470	14.776	9.412	14.119	6.013	8.914	8.157	2.213	2.794	4.953	7.992	6.805	9.678	4.005	9.982	10.032	8.271	5.726	nan	7.321	3.990	4.181	4.642	2.216	5.308	10.665	6.597	1.894	2.184	2.696	2.101
7682	chr8	55011460	55023463	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-2884	NM_006330	10434	Hs.744046	NM_006330	ENSG00000120992	LYPLA1	APT-1|APT1|LPL-I|LPL1|hAPT1	lysophospholipase I	protein-coding	1.953	nan	1.013	0.867	0.909	0.375	0.634	0.462	0.137	0.496	0.288	0.739	1.808	1.522	0.135	6.091	5.508	3.428	2.132	1.708	1.715	1.605	0.541	3.374	3.247	0.727	nan	0.901	1.179	1.391	1.754	2.638	5.164	1.092	0.926	1.477	2.359	1.317	0.858	0.346	0.950	0.222	0.517	0.634	0.739	0.339	1.192	2.980	0.667
4099	chr19	45376959	45395978	+	0	NA	intron (NM_001042724, intron 6 of 8)	LTR23|LTR|ERV1	-8009	NM_001128917	10452	Hs.655909	NM_006114	ENSG00000130204	TOMM40	C19orf1|D19S1177E|PER-EC1|PEREC1|TOM40	translocase of outer mitochondrial membrane 40	protein-coding	1.693	1.018	1.413	0.946	1.158	0.452	1.104	0.429	0.137	0.465	0.315	0.854	1.410	0.758	0.133	1.044	1.177	1.415	2.273	1.755	1.603	2.387	1.054	2.510	2.687	0.910	1.330	1.834	2.480	1.545	1.505	0.705	1.066	1.193	1.249	1.690	5.159	1.429	0.932	0.481	0.836	0.245	0.209	1.104	0.854	0.381	0.489	0.261	2.061
1832	chr12	11945137	11977419	+	0	NA	intron (NM_001987, intron 2 of 7)	intron (NM_001987, intron 2 of 7)	158490	NM_001987	2120	Hs.504765	NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant 6	protein-coding	0.938	1.144	1.751	4.335	2.763	1.529	0.360	0.333	0.070	1.730	0.999	3.281	2.776	0.102	0.115	0.222	0.192	2.344	3.049	nan	2.936	10.427	4.922	1.283	1.449	0.770	1.161	4.353	5.825	0.558	0.443	0.282	0.390	0.494	0.578	0.306	0.557	1.951	1.033	0.343	0.387	0.106	0.042	0.360	3.281	0.057	0.330	0.064	0.118
6392	chr5	102980504	102992807	+	0	NA	Intergenic	Intergenic	-88153	NM_031438	83594	Hs.434289	NM_031438	ENSG00000112874	NUDT12	-	nudix hydrolase 12	protein-coding	0.819	2.399	0.607	2.744	7.549	3.864	0.157	0.092	0.086	0.242	0.139	0.195	1.474	0.027	0.101	0.232	0.138	0.209	0.228	1.028	1.494	0.870	0.137	0.087	0.125	0.388	0.514	2.419	2.446	0.784	0.523	0.079	0.123	0.945	0.544	0.314	1.288	1.041	0.584	0.991	3.044	0.101	0.127	0.157	0.195	0.032	0.262	0.017	0.157
2704	chr14	79185951	79192167	+	0	NA	intron (NM_001330195, intron 8 of 20)	L2b|LINE|L2	318985	NM_004796	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding	nan	0.796	3.441	0.066	1.762	0.942	0.308	0.105	0.040	0.980	0.370	0.621	0.723	0.113	0.130	0.355	0.199	0.115	0.154	4.598	3.503	3.040	1.179	0.244	0.283	0.259	0.575	2.201	2.391	0.801	0.573	0.077	0.212	1.351	0.834	0.220	0.426	6.186	3.600	2.799	4.439	0.147	0.166	0.308	0.621	0.016	0.066	0.080	0.237
6191	chr5	15886467	15894649	+	0	NA	intron (NM_001278317, intron 2 of 3)	AluSp|SINE|Alu	-44733	NR_030616	100126347		NR_030616	ENSG00000216077	MIR887	MIRN887|hsa-mir-887	microRNA 887	ncRNA	nan	nan	12.466	4.838	0.107	0.137	0.122	0.279	0.188	0.694	0.426	0.073	nan	0.079	0.101	0.545	0.479	0.210	0.296	0.441	0.571	7.084	1.733	0.055	0.082	nan	0.604	0.747	1.400	5.443	4.172	0.093	0.178	4.243	4.737	0.202	nan	1.279	0.953	0.018	0.055	0.736	2.258	0.122	0.073	0.023	0.123	0.012	0.362
5946	chr4	78934695	78956491	+	0	NA	Intergenic	L1M5|LINE|L1	-33131	NM_025074	80144	Hs.369448	NM_020875	ENSG00000138759	FRAS1	-	Fraser extracellular matrix complex subunit 1	protein-coding	0.843	0.747	0.807	1.738	0.794	0.411	0.196	0.175	0.105	0.140	0.149	0.975	0.635	0.045	0.112	0.271	0.187	0.244	0.482	0.589	0.635	1.816	0.381	0.269	0.284	0.338	0.445	1.092	0.963	0.376	0.213	0.121	0.147	0.239	0.236	0.797	3.157	0.977	0.486	3.553	0.310	0.061	0.149	0.196	0.975	0.009	0.130	0.041	0.256
7254	chr7	36638781	36679890	+	0	NA	intron (NM_001637, intron 9 of 20)	intron (NM_001637, intron 9 of 20)	-19609	NR_046764	100874264	Hs.690994	NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA	1.430	0.928	1.538	0.368	2.192	1.173	0.510	0.220	0.070	0.476	0.281	5.763	0.795	0.053	0.147	0.459	0.371	0.270	0.584	1.935	nan	2.228	1.004	0.291	0.304	0.644	nan	nan	nan	0.446	0.342	0.149	0.273	0.947	0.758	0.681	nan	1.135	0.823	0.080	0.369	0.290	0.214	0.510	5.763	0.128	0.077	0.053	1.081
3176	chr16	73578718	73590796	+	0	NA	Intergenic	Intergenic	164053	NR_038234	100506172	Hs.434230	NR_038234	ENSG00000258779	LINC01568	-	long intergenic non-protein coding RNA 1568	ncRNA	0.637	0.629	nan	0.212	0.452	0.159	0.487	0.080	0.094	0.104	0.116	0.258	0.668	0.090	0.057	0.396	0.369	0.465	0.513	0.892	0.963	0.075	0.060	0.317	0.455	3.685	3.609	0.412	0.502	0.572	0.330	0.140	0.203	0.070	0.037	0.097	0.166	1.295	0.802	0.014	0.030		0.027	0.487	0.258	0.049	0.193	0.017	0.061
1424	chr11	57541907	57568352	+	0	NA	intron (NM_001085467, intron 1 of 16)	intron (NM_001085467, intron 1 of 16)	25895	NM_001085467	1500	Hs.166011	NM_001331	ENSG00000198561	CTNND1	CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN)	catenin delta 1	protein-coding	0.790	1.051	0.709	0.415	0.518	0.255	0.204	1.101	0.236	0.272	0.179	0.197	0.748	0.422	0.125	0.855	1.086	3.417	5.908	0.601	0.649	0.681	0.280	0.425	0.505	0.572	0.996	1.008	1.188	0.445	0.332	0.469	0.708	0.306	0.509	0.414	0.851	0.634	0.521	0.047	0.098	0.090	0.096	0.204	0.197	0.048	0.027	0.220	0.214
8109	chr9	33674534	33703546	+	0	NA	Intergenic	LTR45|LTR|ERV1	-11622	NR_023917	11191	Hs.493716	NR_023917	ENSG00000237984	PTENP1	PTEN-rs|PTEN2|PTENpg1|PTH2|psiPTEN	phosphatase and tensin homolog pseudogene 1	pseudo	2.243	nan	1.172	0.690	0.773	0.360	0.942	0.121	0.111	3.725	1.950	2.317	1.160	0.236	0.091	0.549	0.551	0.230	0.310	1.955	2.048	4.840	2.193	0.639	0.641	0.347	0.527	0.881	1.088	4.320	4.032	0.513	0.739	4.442	4.666	1.753	3.452	4.519	2.268	0.359	0.487	1.384	2.634	0.942	2.317	0.328	0.459	0.236	1.432
6198	chr5	17213785	17230766	+	0	NA	intron (NM_006317, intron 1 of 1)	intron (NM_006317, intron 1 of 1)	4605	NM_006317	10409	Hs.201641	NM_006317	ENSG00000176788	BASP1	CAP-23|CAP23|NAP-22|NAP22	brain abundant membrane attached signal protein 1	protein-coding	nan	nan	nan	0.316	1.416	0.622	1.450	0.322	0.198	2.302	1.495	1.890	nan	0.103	0.111	0.258	0.134	1.492	1.928	5.392	4.701	2.519	0.731	1.878	1.808	nan	2.686	1.475	2.325	1.968	1.654	0.710	1.769	0.609	0.523	0.655	nan	3.164	1.725	1.180	0.032	0.129	0.032	1.450	1.890	0.268	0.060	0.685	0.203
7115	chr6	170856335	170865638	+	0	NA	intron (NM_002793, intron 1 of 5)	intron (NM_002793, intron 1 of 5)	1431	NM_002793	5689	Hs.352768	NM_002793	ENSG00000008018	PSMB1	HC5|PMSB1|PSC5	proteasome subunit beta 1	protein-coding	nan	1.895	nan	3.546	2.720	1.173	2.449	1.396	0.087	0.995	0.433	2.314	4.707	1.914	0.103	3.453	2.728	4.499	5.930	nan	4.231	9.088	4.380	8.716	8.754	1.585	2.146	nan	4.702	5.968	5.556	1.581	2.860	3.345	5.515	3.923	4.099	1.794	0.682	1.491	2.615	0.378	0.845	2.449	2.314	0.670	1.059	0.752	1.060
4623	chr2	179268154	179280401	+	0	NA	intron (NR_031666, intron 3 of 4)	BLACKJACK|DNA|hAT-Blackjack	-4109	NR_110204	101927027	Hs.715694	NR_110204	ENSG00000223960	LOC101927027	-	uncharacterized LOC101927027	ncRNA	2.554	1.596	1.677	1.190	1.424	0.785	1.765	0.961	0.237	0.703	0.505	1.477	2.965	0.721	0.127	0.627	0.719	1.575	2.154	1.387	1.216	2.688	1.161	1.068	1.098	1.962	2.164	6.769	8.315	2.370	2.407	0.668	1.110	1.947	2.161	2.563	3.037	1.697	0.992	1.063	0.156	0.287	0.376	1.765	1.477	0.309	1.755	0.445	1.073
4388	chr2	65282316	65293139	+	0	NA	intron (NR_134966, intron 1 of 5)	intron (NR_134966, intron 1 of 5)	4232	NM_001319101	23177	Hs.709257	NM_015147	ENSG00000011523	CEP68	KIAA0582	centrosomal protein 68	protein-coding	3.441	0.860	nan	1.238	0.907	0.546	0.840	0.860	0.212	0.910	0.420	1.231	3.328	1.023	0.124	1.664	1.479	1.014	1.551	2.046	1.835	nan	1.092	3.008	3.070	2.299	3.249	1.696	4.002	2.702	2.930	0.820	1.360	0.790	1.047	2.047	2.316	3.747	2.038	1.848	2.043	0.132	0.438	0.840	1.231	1.133	0.703	0.224	0.432
3819	chr18	53066819	53093924	+	0	NA	intron (NM_001330604, intron 5 of 19)	intron (NM_001330604, intron 5 of 19)	-9145	NM_001306208	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding	nan	1.028	1.287	0.214	0.696	0.364	2.278	1.260	0.093	1.023	0.683	1.091	1.362	2.378	0.110	0.615	0.505	4.367	5.518	2.832	2.412	6.579	2.869	0.737	0.868	3.187	3.553	0.645	0.641	2.785	2.286	1.131	1.656	5.847	6.012	0.337	0.652	nan	3.157	0.664	1.185	1.704	0.926	2.278	1.091	1.030	2.653	1.380	0.119
2798	chr14	105620744	105681819	+	0	NA	Intergenic	Intergenic	-3621	NM_001318380	256281	Hs.526432	NM_177533	ENSG00000183828	NUDT14	UGPP|UGPPase	nudix hydrolase 14	protein-coding	1.317	1.105	1.173	2.160	1.703	0.916	0.807	0.189	0.097	0.704	0.511	1.687	1.153	0.362	0.074	1.213	2.125	0.359	0.591	2.920	3.019	2.942	0.714	0.951	0.962	0.437	0.805	4.921	4.779	0.754	0.595	0.846	1.189	0.643	0.487	0.284	0.481	0.410	0.206	3.865	1.722	0.161	1.019	0.807	1.687	0.332	0.836	0.537	0.107
734	chr1	186827515	186847037	+	0	NA	intron (NM_024420, intron 2 of 17)	AluSx|SINE|Alu	39244	NM_001311193	5321	Hs.497200	NM_024420	ENSG00000116711	PLA2G4A	PLA2G4|cPLA2|cPLA2-alpha	phospholipase A2 group IVA	protein-coding	nan	nan	0.998	0.100	0.129	0.049	0.151	0.204	0.247	0.124	0.196	0.037	0.298	0.028	0.133	3.272	4.072	11.388	8.616	0.350	nan	0.142	0.099	nan	4.390	0.643	0.771	0.269	0.263	0.382	0.193	5.433	10.180	0.096	0.093	0.466	nan	0.266	0.381	0.011	0.106	0.029	0.016	0.151	0.037	0.005	0.017	8.105	0.157
7724	chr8	65571118	65620227	+	0	NA	intron (NM_004820, intron 1 of 5)	L2a|LINE|L2	102877	NM_152414	27319	Hs.388788	NM_152414	ENSG00000180828	BHLHE22	BHLHB5|Beta3|Beta3a|CAGL85|TNRC20	basic helix-loop-helix family member e22	protein-coding	1.346	0.664	0.612	0.098	0.326	0.160	0.138	0.130	0.136	0.100	0.113	0.217	0.285	0.028	0.073	0.255	0.125	0.202	0.282	0.642	0.825	3.738	1.543	0.118	0.124	1.152	nan	0.105	0.138	nan	0.269	0.121	0.206	0.949	0.838	0.302	0.505	1.085	0.807	0.011	0.071	0.281	0.127	0.138	0.217	0.014	0.076	0.036	0.111
2621	chr14	58705723	58715006	+	0	NA	Intergenic	L1MC4|LINE|L1	-1159	NM_002788	5684	Hs.558799	NM_002788	ENSG00000100567	PSMA3	HC8|PSC3	proteasome subunit alpha 3	protein-coding	nan	nan	2.191	3.156	2.502	1.450	1.542	1.720	0.279	0.913	0.575	1.807	4.130	1.964	0.153	2.989	2.897	3.308	4.578	3.293	3.285	3.187	1.482	12.204	12.862	2.414	3.233	4.337	7.349	6.925	5.498	2.167	3.898	3.561	4.812	3.710	3.980	nan	1.329	2.426	2.181	0.463	1.414	1.542	1.807	0.482	1.258	1.371	0.992
6736	chr6	35789674	35826950	+	0	NA	intron (NM_003137, intron 14 of 15)	intron (NM_003137, intron 14 of 15)	35241	NM_182548	222662	Hs.367947	NM_182548	ENSG00000197753	LHFPL5	DFNB67|TMHS|dJ510O8.8	lipoma HMGIC fusion partner-like 5	protein-coding	nan	0.814	nan	0.151	0.325	0.147	0.219	0.173	0.164	0.127	0.155	0.163	0.343	0.084	0.151	1.232	1.019	0.953	nan	nan	0.481	0.465	0.169	5.971	6.082	0.431	0.579	0.577	0.570	0.397	0.210	1.470	1.862	0.117	0.142	0.354	0.914	0.467	0.339	0.061	0.122	0.022	0.208	0.219	0.163	0.029	0.038	1.296	0.096
7543	chr7	151560051	151575918	+	0	NA	intron (NM_016203, intron 1 of 15)	intron (NM_016203, intron 1 of 15)	-6143	NR_038926	100505483	Hs.649054	NR_038926		PRKAG2-AS1	-	PRKAG2 antisense RNA 1	ncRNA	1.166	0.695	nan	1.449	0.368	0.202	0.703	0.170	0.080	1.264	0.663	0.309	2.670	0.720	0.153	3.956	6.039	0.714	1.112	0.903	0.721	0.346	0.102	0.633	0.532	1.110	1.769	0.684	1.273	0.790	0.904	1.454	1.840	1.041	1.273	0.188	0.223	1.976	1.229	0.796	2.521	0.197	0.214	0.703	0.309	0.267	0.061	0.810	0.024
2524	chr14	30329907	30345539	+	0	NA	intron (NM_001330069, intron 1 of 18)	intron (NM_001330069, intron 1 of 18)	59176	NM_002742	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding	1.352	1.108	0.841	0.203	0.409	0.184	0.247	0.862	0.220	0.161	0.185	0.505	1.170	0.062	0.161	0.234	0.137	0.300	0.394	0.871	0.789	0.621	0.259	0.313	0.263	4.089	4.778	0.442	0.630	0.906	0.596	0.169	0.220	0.911	1.401	0.217	0.440	0.524	0.519	0.411	0.284	0.306	0.096	0.247	0.505	0.031	0.129	0.059	0.087
1471	chr11	65473679	65488465	+	0	NA	exon (NM_006388, exon 6 of 14)	exon (NM_006388, exon 6 of 14)	1599	NM_182710	10524	Hs.397010	NM_006388	ENSG00000172977	KAT5	ESA1|HTATIP|HTATIP1|PLIP|TIP|TIP60|ZC2HC5|cPLA2	lysine acetyltransferase 5	protein-coding	nan	1.819	1.428	2.592	1.999	0.963	1.353	0.994	0.228	0.636	0.506	2.198	4.052	1.534	0.152	2.682	2.987	2.361	3.250	4.313	4.384	3.303	1.635	3.211	3.610	2.195	2.822	3.205	3.621	2.765	2.598	1.914	3.156	2.097	2.415	1.427	1.565	1.700	0.972	1.717	1.685	0.465	0.993	1.353	2.198	0.811	1.265	0.622	0.537
5806	chr3	196357289	196390611	+	0	NA	intron (NM_198565, intron 1 of 2)	L1ME4a|LINE|L1	7383	NM_198565	375387	Hs.702186	NM_198565	ENSG00000174004	NRROS	ELLP3030|GARPL1|LRRC33|UNQ3030	negative regulator of reactive oxygen species	protein-coding	nan	2.866	1.842	1.324	2.432	1.149	0.734	0.378	0.180	0.555	0.292	1.073	nan	0.446	0.078	1.129	1.067	0.434	0.642	1.868	1.512	2.328	0.769	2.085	2.239	0.736	1.224	2.786	3.284	1.382	0.995	1.340	1.660	0.779	0.708	1.075	1.740	0.964	0.767	3.675	1.826	0.131	0.404	0.734	1.073	0.287	0.366	1.073	0.952
5340	chr3	20964836	20972511	+	0	NA	Intergenic	AluSp|SINE|Alu	-478545	NR_002311	391518	Hs.543226	NR_002311		VENTXP7	HPX42|VENTX1	VENT homeobox pseudogene 7	pseudo	0.558	0.633	0.539	0.046	0.342	0.239	0.083	0.203	0.105	0.102	0.151	0.016	0.194	0.015	0.049	0.743	0.549	6.080	7.081	0.111	0.233	0.092	0.039	0.238	0.166	0.655	0.816	0.369	0.378	nan	0.156	0.449	0.985	0.319	0.347	0.162	0.216	0.545	0.375	0.012	0.023	0.058	0.020	0.083	0.016	0.076	0.019	0.231	0.032
3379	chr17	36708673	36717164	+	0	NA	intron (NM_025248, intron 11 of 18)	intron (NM_025248, intron 11 of 18)	49265	NM_025248	80725	Hs.448872	NM_025248	ENSG00000277363	SRCIN1	P140|SNIP	SRC kinase signaling inhibitor 1	protein-coding	nan	1.703	2.464	0.671	9.298	5.423	1.101	0.328	0.114	4.676	2.352	0.943	3.633	0.166	0.068	0.757	1.094	0.923	1.481	nan	1.638	4.168	0.949	1.354	1.396	1.945	3.072	6.017	6.657	nan	1.882	0.675	0.720	4.233	4.271	1.643	3.207	4.732	2.263	1.285	0.653	0.895	0.692	1.101	0.943	1.794	2.814	0.362	1.207
373	chr1	77911255	77916379	+	0	NA	intron (NM_174858, intron 8 of 13)	MER52A|LTR|ERV1	165530	NM_012093	26289	Hs.559718	NM_012093	ENSG00000154027	AK5	AK6	adenylate kinase 5	protein-coding	nan	0.743	1.537	0.101	0.384	0.064	0.128	0.099	0.031	0.090	0.150	0.140	0.466	0.036	0.165	1.186	0.702	8.554	3.415	0.343	nan	0.929	0.360	1.906	1.904	0.553	nan	0.856	0.735	0.327	0.221	1.895	2.355	0.403	0.443	0.300	0.661	0.442	0.626	0.043	0.005	0.056	0.063	0.128	0.140	0.039	0.019	0.872	0.216
2078	chr12	92617502	92633681	+	0	NA	Intergenic	Tigger6a|DNA|TcMar-Tigger	85730	NR_135036	101928617	Hs.434392	NR_135036		LOC101928617	-	uncharacterized LOC101928617	ncRNA	1.019	0.890	0.655	0.061	0.217	0.168	0.213	0.263	0.100	0.107	0.118	0.162	nan	0.051	0.109	0.824	0.511	5.135	1.135	0.479	0.476	0.360	0.131	0.618	0.706	1.546	nan	0.302	nan	1.864	2.027	0.220	0.366	0.099	0.117	0.417	0.895	0.659	0.648	0.127	0.087	0.070	0.088	0.213	0.162	0.129	0.025	0.061	0.260
5359	chr3	41235370	41242752	+	0	NA	Intergenic	Intergenic	-1854	NM_001330729	1499	Hs.476018	NM_001904	ENSG00000168036	CTNNB1	CTNNB|MRD19|armadillo	catenin beta 1	protein-coding	2.022	nan	nan	1.418	1.080	0.591	1.353	1.164	0.109	1.289	0.812	1.038	4.886	1.521	0.133	1.237	1.939	3.083	3.445	4.113	3.630	2.505	1.192	3.525	3.394	1.460	1.925	2.808	4.272	8.966	9.802	1.467	2.968	6.073	5.463	2.186	1.776	1.128	0.562	0.832	1.082	1.261	0.909	1.353	1.038	0.370	1.266	0.550	0.582
5609	chr3	153330678	153360883	+	0	NA	Intergenic	Intergenic	143496	NM_001101337	152118	Hs.58586	NM_001101337		C3orf79	-	chromosome 3 open reading frame 79	protein-coding	nan	0.974	0.781	0.122	0.217	0.101	0.284	0.127	0.107	0.146	0.225	0.036	0.131	0.025	0.090	0.308	0.208	0.259	0.301	0.246	0.325	0.292	0.171	0.266	0.253	0.181	nan	0.164	0.199	0.973	0.700	0.123	0.228	1.447	1.749	1.380	5.343	0.235	0.282	0.024	0.059	0.394	0.131	0.284	0.036	0.010	0.037	0.039	2.052
7319	chr7	72857773	72866556	+	0	NA	intron (NM_032408, intron 15 of 19)	intron (NM_032408, intron 15 of 19)	14055	NM_003508	8326	Hs.647029	NM_003508	ENSG00000188763	FZD9	CD349|FZD3	frizzled class receptor 9	protein-coding	nan	1.305	1.370	1.477	3.396	1.854	1.155	0.280	0.109	2.547	1.228	2.687	2.673	0.271	0.200	0.515	0.669	0.803	nan	3.480	4.682	5.967	1.393	0.161	0.212	0.288	nan	1.573	nan	0.497	0.381	0.317	0.457	4.076	3.904	0.197	0.601	5.021	1.977	0.315	2.570	2.256	3.795	1.155	2.687	0.044	0.093	0.056	0.086
8403	chrX	115565468	115569606	+	0	NA	promoter-TSS (NM_007231)	promoter-TSS (NM_007231)	-210	NM_007231	11254	Hs.522109	NM_007231	ENSG00000268104	SLC6A14	BMIQ11	solute carrier family 6 member 14	protein-coding	0.342	0.348	0.753	0.085	0.244	0.274	0.218	0.129		0.076	0.098		0.275		0.191	0.453	0.220	10.901	9.457	0.157	0.150	2.204	0.597	0.419	0.224	0.122	0.097	0.946	1.072	0.442	0.142	0.123	0.207	0.101	0.036	0.135	0.133	1.471	0.496		0.143		0.086	0.218			0.049	0.025	0.031
6148	chr5	4478829	4483136	+	0	NA	Intergenic	Intergenic	-292612	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA	0.487	1.021	0.969	0.163	0.443	0.456	0.119	0.138	0.189	0.146	0.171	0.332	3.283	0.026	0.068	1.127	0.872	10.336	3.792	2.211	1.460	0.155	0.049	0.021	0.025	0.130	0.256	nan	1.139	nan	0.455	0.536	0.773	0.057	0.147	0.115	0.157	0.178	nan	0.027	0.629	0.022	0.019	0.119	0.332	0.045	0.494	0.321	
1309	chr11	12199012	12213279	+	0	NA	intron (NR_144420, intron 3 of 27)	intron (NR_144420, intron 3 of 27)	20915	NR_106739	102466906		NR_106739	ENSG00000275373	MIR6124	hsa-mir-6124	microRNA 6124	ncRNA	0.996	nan	0.953	0.605	0.672	0.248	0.359	3.198	0.351	0.110	0.161	1.279	3.306	0.053	0.074	nan	0.630	0.401	0.719	1.445	1.416	1.276	0.465	0.751	0.717	1.136	nan	3.476	2.889	1.793	1.544	0.455	0.586	0.472	0.649	0.430	1.203	1.491	nan	5.108	1.336	0.139	0.104	0.359	1.279	0.246	1.642	0.146	0.565
1752	chr12	87919	94603	+	0	NA	TTS (NR_130745)	TTS (NR_130745)	17536	NR_130745	100288778	Hs.459573	NR_130745	ENSG00000226210	LOC100288778	-	WAS protein family homolog 1 pseudogene	pseudo	1.569	nan	nan	0.840	0.730	0.289	5.986	0.183	0.137	1.842	0.867	0.660	5.076	0.592	0.136	0.447	0.893	0.430	0.867	nan	3.951	1.286	0.334	1.392	1.360	1.471	2.128	0.754	0.666	0.881	1.007	0.479	0.447	1.112	0.898	0.451	nan	3.864	1.863	10.530	2.850	0.770	0.256	5.986	0.660	1.551	1.620	0.088	0.279
4508	chr2	135783194	135813360	+	0	NA	Intergenic	Intergenic	-11558	NM_012233	22930	Hs.306327	NM_012233	ENSG00000115839	RAB3GAP1	P130|RAB3GAP|RAB3GAP130|WARBM1	RAB3 GTPase activating protein catalytic subunit 1	protein-coding	nan	0.895	nan	0.391	0.458	0.292	0.300	0.370	0.101	0.183	0.207	0.444	1.013	0.281	0.089	0.617	0.507	0.646	0.927	0.569	0.574	1.291	0.552	0.638	0.620	0.573	0.892	0.785	nan	1.416	1.058	0.444	0.600	0.312	0.337	1.269	4.242	0.524	0.437	0.196	0.315	0.067	0.160	0.300	0.444	0.098	0.103	0.177	2.185
2874	chr15	49918830	49923563	+	0	NA	intron (NM_020234, intron 3 of 5)	L1PA7|LINE|L1	7970	NM_020234	56986	Hs.127432	NM_020234	ENSG00000104047	DTWD1	MDS009	DTW domain containing 1	protein-coding	0.703	0.818	nan	0.166	0.279	0.238	0.028	0.205	0.067	0.099	0.201	0.077	0.250	0.091	0.096	0.375	0.530	10.820	5.620	0.195	0.280	0.231	0.012	0.206	0.164	0.413	nan	0.254	0.357	0.516	0.218	0.507	0.885	0.124	0.199	0.263	0.416	0.488	0.349	0.035	0.075	0.020	0.068	0.028	0.077	0.060	0.064	0.333	0.079
5352	chr3	30196842	30241887	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-243717	NR_046556	100873977	Hs.581453	NR_046556	ENSG00000235593	RBMS3-AS1	-	RBMS3 antisense RNA 1	ncRNA	0.559	0.800	0.889	0.072	0.169	0.060	0.108	0.142	0.076	0.084	0.171	0.221	0.314	0.160	0.070	0.221	0.138	0.177	0.297	0.236	0.309	2.029	0.465	0.137	0.122	5.737	nan	0.246	0.250	0.400	0.170	0.109	0.138	0.309	0.366	0.119	0.169	0.820	0.480	0.027	0.039	0.083	0.197	0.108	0.221	0.049	0.092	0.046	0.033
6918	chr6	118329484	118341000	+	0	NA	intron (NM_001029858, intron 1 of 7)	MIRb|SINE|MIR	-71824	NR_134601	105377967	Hs.692865	NR_134601		LOC105377967	-	uncharacterized LOC105377967	ncRNA	nan	0.992	nan	0.117	0.212	0.091	0.745	0.039	0.084	0.067	0.084	0.076	0.299	0.019	0.111	0.336	0.379	0.387	0.430	0.474	nan	nan	0.095	0.251	0.196	0.230	nan	0.245	0.212	1.982	1.817	0.144	0.261	0.082	0.053	0.215	nan	0.315	0.351	5.506	0.153	0.032	0.007	0.745	0.076	0.017	0.044	0.095	0.042
1622	chr11	109997812	110005918	+	0	NA	intron (NM_033390, intron 1 of 5)	intron (NM_033390, intron 1 of 5)	37778	NM_033390	85463	Hs.376289	NM_033390	ENSG00000149289	ZC3H12C	MCPIP3	zinc finger CCCH-type containing 12C	protein-coding	1.018	1.390	3.944	3.073	3.532	1.919	1.623	0.175	0.039	3.351	1.551	2.499	5.209	0.275	0.114	13.466	11.515	0.680	1.194	10.814	9.776	9.227	5.771	0.259	0.272	3.962	4.192	2.596	4.971	4.407	5.016	0.571	0.746	9.390	11.364	0.284	0.489	4.658	2.060	0.501	0.198	1.326	3.478	1.623	2.499	0.516	1.344	0.098	0.061
8060	chr9	14173191	14187072	+	0	NA	intron (NM_001190737, intron 2 of 10)	intron (NM_001190737, intron 2 of 10)	670	NM_001282787	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding	nan	nan	1.311	0.646	0.860	0.507	0.193	0.383	0.081	0.802	0.605	0.383	1.413	0.102	0.115	0.245	0.174	3.351	7.654	0.465	0.518	2.316	0.687	0.177	0.163	7.595	9.337	0.753	0.817	0.262	0.116	0.257	0.328	1.864	2.912	0.232	0.534	2.678	1.296	0.534	0.084	0.522	0.097	0.193	0.383	0.034	0.051	0.043	0.035
3685	chr18	21542457	21550720	+	0	NA	Intergenic	AluSx|SINE|Alu	-26149	NM_153211	125488	Hs.128576	NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding	1.195	1.245	1.107	0.602	0.682	0.329	0.566	0.181	0.040	0.181	0.091	0.422	1.585	0.009	0.068	0.599	0.513	0.253	nan	0.891	0.879	11.395	3.242	0.211	0.294	0.208	0.386	0.933	0.486	0.621	0.313	0.191	0.272	1.595	2.393	0.644	2.108	1.640	1.424	0.443	0.621	0.254	0.489	0.566	0.422	0.163	0.239	0.096	0.374
4457	chr2	105944333	105961892	+	0	NA	promoter-TSS (NM_024093)	promoter-TSS (NM_024093)	-704	NM_024093	79074	Hs.549577	NM_024093	ENSG00000135974	C2orf49	asw	chromosome 2 open reading frame 49	protein-coding	2.205	nan	1.873	1.751	1.776	0.988	1.707	0.834	0.101	1.036	0.468	1.621	2.970	0.908	0.090	2.323	2.092	2.654	3.704	4.205	4.077	4.645	2.579	5.273	5.394	1.957	2.503	3.845	5.374	2.873	2.891	1.681	2.623	1.534	1.357	2.864	2.325	1.455	0.956	0.918	0.675	0.201	0.503	1.707	1.621	0.488	1.152	0.525	0.806
3605	chr17	78636352	78682835	+	0	NA	intron (NM_001163034, intron 3 of 29)	intron (NM_001163034, intron 3 of 29)	119839	NR_110852	101928855	Hs.670692	NR_110852	ENSG00000262833	LOC101928855	-	uncharacterized LOC101928855	ncRNA	1.254	1.037	1.721	0.967	0.518	0.313	0.719	0.218	0.135	0.199	0.199	0.619	1.489	0.073	0.118	0.541	0.793	0.284	0.453	1.171	1.239	1.496	0.342	0.433	0.449	nan	1.327	3.854	4.212	1.240	1.057	0.723	0.909	0.912	1.039	0.481	0.977	nan	0.686	1.773	1.844	0.166	0.152	0.719	0.619	0.323	2.579	0.595	0.208
975	chr1	246263498	246281071	+	0	NA	intron (NM_001167740, intron 5 of 11)	L2c|LINE|L2	308430	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding	nan	1.219	nan	4.350	0.704	0.330	1.188	0.323	0.111	0.484	0.408	1.640	1.441	0.110	0.114	0.434	0.400	0.521	0.880	0.869	1.038	6.933	2.645	0.605	0.677	0.541	0.717	5.062	5.341	0.372	0.205	0.162	0.295	0.885	1.362	0.558	1.133	1.226	0.835	0.110	0.162	0.109	0.059	1.188	1.640	0.050	2.567	0.060	0.266
5753	chr3	185646413	185662060	+	0	NA	intron (NM_004593, intron 1 of 8)	intron (NM_004593, intron 1 of 8)	1688	NM_001243879	6434	Hs.533122	NM_004593	ENSG00000136527	TRA2B	Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B	transformer 2 beta homolog (Drosophila)	protein-coding	3.973	2.944	2.168	2.788	4.087	2.346	1.858	1.985	0.278	1.890	0.988	1.797	6.121	1.467	0.129	3.057	2.971	3.272	4.436	5.220	4.653	5.368	2.941	6.347	6.380	3.199	4.026	3.659	5.036	7.788	8.119	2.370	4.827	3.346	3.343	5.375	4.062	2.203	1.304	1.939	2.392	0.530	1.879	1.858	1.797	0.489	0.921	1.274	1.503
7901	chr8	121455170	121459595	+	0	NA	promoter-TSS (NM_022045)	promoter-TSS (NM_022045)	-256	NM_022045	27085	Hs.657656	NM_022045	ENSG00000172167	MTBP	MDM2BP	MDM2 binding protein	protein-coding	nan	nan	nan	4.072	4.430	2.204	2.563	2.273	0.259	0.906	0.427	4.323	nan	1.708	0.097	4.609	4.810	6.134	7.887	9.768	10.021	8.367	4.904	20.748	23.121	4.334	4.995	3.976	5.450	7.898	7.522	5.489	9.956	4.921	4.706	6.156	6.238	2.728	1.859	2.517	2.233	0.910	1.026	2.563	4.323	0.525	2.082	2.128	1.766
3709	chr18	29670088	29675175	+	0	NA	promoter-TSS (NM_001191324)	promoter-TSS (NM_001191324)	62	NM_001191324	51444	Hs.302408	NM_016271	ENSG00000134758	RNF138	HSD-4|NARF|STRIN|hNARF	ring finger protein 138	protein-coding	4.801	4.347	5.627	5.945	5.927	2.868	9.767	1.760	0.348	2.773	0.991	5.195	10.216	2.114	0.103	7.621	7.029	6.918	nan	12.958	10.861	13.558	9.770	8.814	9.482	2.704	3.714	11.626	16.469	7.465	8.308	1.994	4.028	10.279	9.302	7.298	6.011	6.780	4.267	3.871	4.331	2.068	4.304	9.767	5.195	1.601	3.106	1.122	2.050
3113	chr16	30619880	30632242	+	0	NA	Intergenic	AluSq2|SINE|Alu	-3965	NR_073481	115509	Hs.454685	NM_138447	ENSG00000156853	ZNF689	TIPUH1	zinc finger protein 689	protein-coding	2.135	1.451	3.396	2.098	1.296	0.791	1.622	0.600	0.117	0.620	0.309	2.283	3.708	1.078	0.111	2.077	1.750	1.224	1.808	2.128	2.146	6.532	2.492	2.746	2.842	1.925	2.393	3.454	4.642	3.004	2.637	1.537	1.913	2.002	2.064	1.556	1.416	1.772	1.021	1.804	0.879	0.237	0.894	1.622	2.283	0.551	1.557	0.555	0.511
1893	chr12	30915125	30920482	+	0	NA	intron (NR_135046, intron 1 of 1)	intron (NR_135046, intron 1 of 1)	9795	NR_135046	645485	Hs.232332	NR_135046	ENSG00000246331	LOC645485	-	uncharacterized LOC645485	ncRNA	1.484	nan	1.488	1.429	0.722	0.238	0.287	0.069	0.119	0.440	0.215	0.112	0.879		0.117	0.328	0.207	0.188	0.304	0.738	0.869	5.334	1.356	0.247	0.353	0.221	0.439	0.684	0.639	0.682	0.448	0.176	0.175	7.995	14.173	0.154	0.305	2.142	1.125	0.052	0.065	2.449	0.030	0.287	0.112	0.617	3.918	0.037	0.024
3572	chr17	75522252	75526993	+	0	NA	Intergenic	CpG	-18401	NR_040050	100507351	Hs.514518	NR_040050		LOC100507351	-	uncharacterized LOC100507351	ncRNA	6.791	1.413	1.173	0.107	1.014	0.617	2.309	0.094	0.101	1.256	0.705	1.789	2.223	0.953	0.150	18.578	16.321	0.458	0.781	1.501	1.268	10.086	4.428	10.230	11.056	nan	9.161	3.470	5.504	3.519	4.789	8.336	10.839	1.563	1.469	4.139	5.623	nan	0.315	1.263	0.112	0.264	0.496	2.309	1.789	1.952	0.345	6.039	0.729
534	chr1	150768602	150773809	+	0	NA	intron (NM_000396, intron 7 of 7)	MSTB|LTR|ERVL-MaLR	9712	NM_000396	1513	Hs.632466	NM_000396	ENSG00000143387	CTSK	CTS02|CTSO|CTSO1|CTSO2|PKND|PYCD	cathepsin K	protein-coding	nan	nan	1.440	0.695	0.987	0.276	4.552	0.289	0.123	2.007	0.514	1.382	1.253	0.063	0.089	0.618	0.757	0.382	0.674	1.884	nan	8.816	7.641	0.404	0.472	0.500	1.044	2.155	2.506	0.550	0.421	0.471	0.970	0.882	1.508	0.618	1.165	2.086	1.297	0.064	1.304	0.093	6.508	4.552	1.382	0.242	0.097	0.225	0.118
746	chr1	192279134	192299790	+	0	NA	intron (NM_001039152, intron 1 of 4)	L1ME5|LINE|L1	3340	NM_001039152	431704	Hs.558673	NM_001039152	ENSG00000253148	RGS21	-	regulator of G-protein signaling 21	protein-coding	0.861	nan	0.780	0.102	0.136	0.054	0.135	0.135	0.179	0.166	0.213	0.012	0.225	0.074	0.118	1.516	0.517	7.659	3.022	0.307	0.545	0.147	0.060	8.541	8.590	0.710	nan	0.292	0.316	0.409	0.182	0.100	0.192	0.066	0.106	0.362	0.668	0.184	0.251	0.011	0.056	0.005	0.015	0.135	0.012	0.005	0.030	0.047	0.084
5701	chr3	177911723	177927974	+	0	NA	Intergenic	MIRc|SINE|MIR	-217141	NR_046786	100874330	Hs.201902	NR_046786	ENSG00000223941	LINC01014	KCNMB2-IT1	long intergenic non-protein coding RNA 1014	ncRNA	1.278	1.202	0.996	0.199	1.293	0.804	0.330	0.538	0.179	0.194	0.240	0.188	0.406	0.060	0.089	0.449	0.475	0.405	0.628	0.377	0.499	4.756	2.786	0.264	0.257	0.899	1.122	0.368	0.391	0.646	0.342	0.406	0.409	0.149	0.247	0.633	1.901	0.640	0.566	0.048	0.093	0.031	0.211	0.330	0.188	0.054	0.044	0.080	0.474
8184	chr9	87458507	87469451	+	0	NA	intron (NM_001018064, intron 11 of 16)	intron (NM_001018064, intron 11 of 16)	178687	NM_001018064	4915	Hs.494312	NM_006180	ENSG00000148053	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic receptor tyrosine kinase 2	protein-coding	0.752	1.848	0.748	0.135	0.138	0.207	2.024	0.150	0.147	0.743	0.354	0.077	1.412	0.020	0.081	0.233	0.216	0.779	0.739	0.385	0.429	2.537	0.605	0.167	0.106	0.101	0.146	0.371	0.584	0.233	0.175	0.152	0.198	2.243	2.945	0.183	0.259	3.345	1.811	0.066	0.016	0.503	0.014	2.024	0.077	0.144	0.269	0.046	0.126
7734	chr8	68402679	68421580	+	0	NA	intron (NM_020361, intron 6 of 10)	L1MD1|LINE|L1	156060	NR_136223	102724708	Hs.636330	NR_136223		LOC102724708	-	uncharacterized LOC102724708	ncRNA	1.108	0.877	0.578	0.485	0.399	0.260	0.292	0.745	0.102	0.345	0.266	3.997	2.406	0.051	0.095	0.292	0.153	0.389	0.604	1.095	1.063	0.390	0.099	0.111	0.108	0.389	nan	0.130	0.138	nan	0.187	0.204	0.326	0.475	0.740	0.232	0.342	1.892	0.956	0.159	0.365	0.147	0.122	0.292	3.997	0.010	0.107	0.179	0.074
151	chr1	26313279	26327736	+	0	NA	intron (NM_000437, intron 1 of 10)	intron (NM_000437, intron 1 of 10)	4141	NM_000437	5051	Hs.477083	NM_000437	ENSG00000158006	PAFAH2	HSD-PLA2	platelet activating factor acetylhydrolase 2	protein-coding	2.025	1.187	nan	1.093	0.763	0.320	0.823	0.362	0.122	0.409	0.242	0.388	2.317	0.655	0.144	0.737	1.079	0.983	1.411	2.075	2.307	1.880	0.551	1.691	1.944	1.842	2.626	1.569	2.282	3.389	3.058	0.707	0.902	0.594	0.690	2.800	7.326	1.434	0.880	0.551	0.508	0.133	0.860	0.823	0.388	0.925	0.492	0.470	2.137
3822	chr18	53244058	53258564	+	0	NA	intron (NM_001330604, intron 3 of 19)	intron (NM_001330604, intron 3 of 19)	2039	NM_001306207	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding	nan	0.858	0.919	1.315	2.518	1.426	3.358	1.353	0.045	1.267	0.907	2.915	3.429	3.939	0.126	2.271	3.131	4.274	3.993	8.036	6.297	10.368	4.541	6.112	6.151	2.388	3.008	1.902	2.741	2.817	3.388	2.164	3.359	6.051	5.446	1.831	1.949	nan	2.724	0.665	1.907	1.558	2.209	3.358	2.915	0.622	3.803	1.802	0.835
5347	chr3	25462523	25517300	+	0	NA	intron (NR_110893, intron 1 of 6)	intron (NR_110893, intron 1 of 6)	-9890	NM_001290217	5915	Hs.543218	NM_000965	ENSG00000077092	RARB	HAP|MCOPS12|NR1B2|RARbeta1|RRB2	retinoic acid receptor beta	protein-coding	0.839	0.921	0.613	0.052	0.220	0.123	0.152	0.615	0.138	0.122	0.176	0.033	0.215	1.298	0.086	0.170	0.137	1.354	4.919	0.311	0.342	0.080	0.060	0.158	0.176	0.719	0.958	0.179	0.201	nan	0.392	0.156	0.235	1.383	1.668	0.120	0.214	0.353	0.367	0.038	0.039	0.364	0.134	0.152	0.033	0.035	0.103	0.034	0.057
1952	chr12	53439039	53458400	+	0	NA	promoter-TSS (NR_033854)	promoter-TSS (NR_033854)	-497	NR_033854	283335	Hs.657060	NR_033854	ENSG00000257337	LOC283335	-	uncharacterized LOC283335	ncRNA	nan	1.721	2.849	1.554	1.080	0.697	0.707	1.560	0.216	0.632	0.496	1.312	3.390	0.796	0.061	nan	2.389	1.869	2.625	2.354	nan	4.204	1.311	2.117	2.167	1.180	nan	6.401	nan	0.978	0.861	0.666	1.068	1.238	1.008	0.720	1.258	2.664	1.309	1.852	1.462	0.291	0.262	0.707	1.312	0.703	1.988	0.346	0.365
7831	chr8	101420962	101447448	+	0	NA	Intergenic	Intergenic	39214	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA	2.142	nan	nan	1.994	3.997	2.104	2.519	0.268	0.122	0.556	0.246	5.181	6.956	0.016	0.079	0.327	0.444	0.244	0.549	6.182	6.225	nan	1.364	0.397	0.366	0.428	nan	4.413	nan	nan	0.606	0.336	0.556	1.544	1.492	0.625	nan	1.815	0.967	2.903	1.742	0.346	0.627	2.519	5.181	0.227	2.450	0.246	0.399
475	chr1	118619637	118646050	+	0	NA	intron (NM_206996, intron 10 of 48)	intron (NM_206996, intron 10 of 48)	95005	NM_206996	200162	Hs.528821	NM_206996	ENSG00000155761	SPAG17	CT143|PF6	sperm associated antigen 17	protein-coding	nan	0.756	0.783	0.409	0.284	0.146	0.247	0.509	0.136	0.249	0.200	0.335	0.556	0.057	0.118	0.295	0.185	0.304	0.884	0.346	nan	3.811	1.175	0.218	0.202	0.448	0.724	1.523	1.561	0.351	0.161	0.181	0.253	0.879	0.956	0.173	0.272	1.137	0.732	0.271	0.195	0.210	0.030	0.247	0.335	0.015	0.553	0.060	0.037
6032	chr4	140921141	140960833	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	134246	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding	1.055	1.111	1.127	1.765	1.986	1.011	0.443	0.212	0.106	0.722	0.345	1.277	0.879	0.044	0.091	0.355	0.398	0.283	0.315	1.476	1.372	3.602	1.088	0.145	0.138	2.861	3.280	1.426	1.818	0.739	0.470	0.464	0.754	1.109	1.600	0.592	1.370	1.324	0.731	0.383	0.199	0.218	0.294	0.443	1.277	0.167	0.656	0.372	0.192
1525	chr11	74985846	74992149	+	0	NA	intron (NM_020251, intron 8 of 14)	Plat_L3|LINE|CR1	37047	NM_001195528	100507050	Hs.577323	NM_001195528	ENSG00000261594	TPBGL	-	trophoblast glycoprotein-like	protein-coding	nan	2.657	0.908	2.794	1.035	0.434	0.528	0.107	0.037	0.274	0.102	5.237	2.539	0.121	0.108	0.780	0.871	0.230	0.455	8.299	9.205	2.888	0.723	0.983	1.108	0.527	1.037	9.012	7.999	2.752	2.703	0.454	0.756	0.930	0.506	0.559	1.571	1.558	1.173	8.830	4.956	0.198	0.612	0.528	5.237	1.045	0.129	0.134	0.969
4047	chr19	38825903	38828592	+	0	NA	intron (NM_001330496, intron 1 of 27)	CpG	804	NM_021185	57828	Hs.324335	NM_021185	ENSG00000099338	CATSPERG	C19orf15	cation channel sperm associated auxiliary subunit gamma	protein-coding	3.165	2.645	3.493	6.208	2.948	2.349	1.011	1.956	0.475	1.221	0.459	2.401	23.259	3.807	0.166	1.408	2.770	3.490	4.249	5.197	3.675	8.171	3.385	7.715	9.707	1.933	3.124	5.929	7.327	nan	2.728	1.769	2.571	2.757	2.053	1.701	3.655	2.849	1.147	2.862	5.322	0.486	1.413	1.011	2.401	0.540	2.504	1.377	0.730
7199	chr7	22504778	22528992	+	0	NA	intron (NM_001164460, intron 4 of 4)	intron (NM_001164460, intron 4 of 4)	23016	NM_001164460	256227	Hs.729825	NM_207342	ENSG00000105889	STEAP1B	-	STEAP family member 1B	protein-coding	1.167	1.147	1.208	0.332	0.279	0.159	0.501	0.155	0.139	0.246	0.259	3.016	0.789	0.049	0.136	0.587	0.530	1.020	nan	1.152	1.267	0.573	0.236	0.307	0.348	0.690	0.998	1.041	1.304	0.488	0.342	0.321	0.475	0.218	0.376	0.393	nan	1.852	1.091	0.034	0.316	0.032	0.082	0.501	3.016	0.089	0.240	0.162	0.225
2545	chr14	34480823	34491310	+	0	NA	Intergenic	L1ME4a|LINE|L1	-65782	NM_022073	112399	Hs.135507	NM_022073	ENSG00000129521	EGLN3	HIFP4H3|HIFPH3|PHD3	egl-9 family hypoxia inducible factor 3	protein-coding	1.545	0.929	0.846	0.202	1.239	0.475	0.521	0.144	0.223	0.060	0.186	0.239	0.463	0.120	0.144	0.320	0.398	0.229	0.416	0.693	0.684	0.100	0.052	0.443	0.438	0.439	0.633	0.957	0.822	1.657	1.545	0.992	1.827	0.072	0.179	1.039	2.672	0.407	0.509	6.771	2.136	0.036	0.060	0.521	0.239	0.092	0.473	1.422	0.992
138	chr1	23693617	23704901	+	0	NA	TTS (NR_033690)	TTS (NR_033690)	-2902	NM_001077195	80818	Hs.293798	NM_030634	ENSG00000125945	ZNF436	ZNF|Zfp46	zinc finger protein 436	protein-coding	3.752	2.971	nan	4.455	2.708	1.372	2.475	0.860	0.367	1.009	0.701	1.033	10.856	2.372	0.177	1.732	2.290	2.425	3.928	5.165	5.096	4.103	1.105	4.037	4.313	3.801	5.021	3.463	4.149	2.453	2.610	1.155	2.770	2.319	3.130	3.019	5.246	1.606	0.930	3.231	1.849	0.826	1.744	2.475	1.033	0.979	1.265	0.712	1.942
724	chr1	185360533	185365625	+	0	NA	Intergenic	Intergenic	-58908	NR_038424	100288079	Hs.131220	NR_038424	ENSG00000261024	GS1-279B7.1	-	microtubule associated protein 1 light chain 3 beta pseudogene	pseudo	nan	nan	0.879	0.297	0.288	0.095	0.327	0.161	0.063	0.214	0.214	0.604	1.757	0.147	0.136	0.956	0.875	8.549	11.985	0.378	nan	0.314	0.106	nan	1.784	0.403	0.723	1.265	1.334	0.305	0.172	2.536	4.213	0.050	0.069	0.207	nan	0.563	0.538	0.033	0.207		0.247	0.327	0.604	0.020	0.020	1.282	0.049
3598	chr17	78092633	78104993	+	0	NA	Intergenic	Intergenic	22169	NM_014740	9775	Hs.389649	NM_014740	ENSG00000141543	EIF4A3	DDX48|MUK34|NMP265|NUK34|RCPS|eIF4AIII	eukaryotic translation initiation factor 4A3	protein-coding	1.239	0.945	0.992	0.332	0.470	0.158	0.244	0.205	0.143	0.203	0.080	0.205	0.532	0.052	0.091	4.700	6.307	0.277	0.334	0.580	0.570	0.966	0.284	1.037	1.141	nan	0.411	0.608	0.798	0.809	0.580	0.372	0.562	0.165	0.160	0.781	1.940	nan	0.611	0.050	0.174	0.078	0.144	0.244	0.205	0.128	1.397	0.145	0.348
3534	chr17	71690137	71707143	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-35353	NM_001278587	100134391	Hs.694655	NM_001278587		LOC100134391	-	uncharacterized LOC100134391	protein-coding	0.966	1.115	1.198	0.339	1.448	0.859	1.725	0.120	0.028	0.666	0.363	0.963	2.380	0.051	0.111	0.823	0.832	0.310	0.299	1.748	1.931	1.406	0.484	0.139	0.138	nan	0.556	1.808	1.656	0.728	0.365	0.283	0.454	0.435	0.400	0.292	0.528	nan	1.880	0.292	0.555	0.033	0.087	1.725	0.963	0.034	1.675	0.111	0.094
1195	chr10	103041601	103092773	+	0	NA	Intergenic	Intergenic	-43880	NR_120621	101927419	Hs.638503	NR_120621	ENSG00000229649	LOC101927419	-	uncharacterized LOC101927419	ncRNA	nan	nan	1.013	0.157	0.683	0.385	0.378	0.072	0.060	0.186	0.159	1.667	0.627	0.150	0.066	0.426	0.592	0.231	0.286	1.231	1.355	0.486	0.150	0.172	0.167	0.427	nan	1.430	1.468	0.839	0.718	0.183	0.285	0.248	0.136	1.181	nan	0.845	0.554	0.312	0.720	0.067	0.177	0.378	1.667	0.139	0.217	0.054	1.075
5646	chr3	168507136	168514447	+	0	NA	intron (NR_021485, intron 7 of 15)	intron (NR_021485, intron 7 of 15)	-108942	NR_109989	100507661	Hs.65918	NR_109989	ENSG00000242268	LINC02082	-	long intergenic non-protein coding RNA 2082	ncRNA	1.038	1.158	0.820	0.322	0.346	0.219	0.123	0.162	0.044	1.180	0.474	0.049	0.151		0.091	0.438	0.342	0.188	0.269	0.866	0.790	12.665	5.444	0.227	0.211	0.516	0.721	nan	1.100	nan	0.411	0.119	0.226	0.596	0.498	0.311	0.441	0.987	0.951	0.046	0.096	0.091	0.087	0.123	0.049	0.040	0.292	0.055	0.100
5082	chr21	28081554	28095110	+	0	NA	Intergenic	Intergenic	129396	NM_006988	9510	Hs.643357	NM_006988	ENSG00000154734	ADAMTS1	C3-C5|METH1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein-coding	0.761	0.597	1.104	0.073	0.193	0.036	0.444	0.107	0.095	0.266	0.141	0.026	0.476	0.048	0.076	0.280	0.198	0.229	0.401	0.306	0.333	0.192	0.062	0.299	0.302	0.841	1.308	0.164	0.206	0.712	0.383	0.117	0.147	1.908	1.400	0.137	nan	3.632	1.926	0.036	0.033	0.301	0.094	0.444	0.026	0.108	0.128	0.042	0.045
1327	chr11	16914635	16936916	+	0	NA	intron (NM_001329631, intron 3 of 22)	intron (NM_001329631, intron 3 of 22)	110188	NM_001329630	144100	Hs.12332	NM_175058	ENSG00000166689	PLEKHA7	-	pleckstrin homology domain containing A7	protein-coding	0.967	nan	1.046	0.358	0.442	0.260	1.586	0.102	0.059	0.302	0.177	0.500	3.626	0.107	0.082	nan	0.658	0.358	0.749	2.611	2.420	1.358	0.325	0.321	0.294	0.407	nan	1.335	1.604	0.512	0.364	0.466	0.548	0.991	1.055	0.584	2.522	1.419	nan	0.957	2.952	0.265	0.384	1.586	0.500	0.083	0.014	0.134	0.591
7785	chr8	91924542	91942069	+	0	NA	intron (NM_022351, intron 6 of 12)	AluSx1|SINE|Alu	64180	NM_001190972	100127983	Hs.733266	NM_001190972	ENSG00000253250	C8orf88	-	chromosome 8 open reading frame 88	protein-coding	nan	0.828	1.421	0.624	0.427	0.215	0.522	0.549	0.126	0.080	0.099	0.041	0.296	0.067	0.104	0.223	0.166	0.220	nan	0.475	0.530	0.319	0.133	0.255	0.167	0.298	0.467	1.154	1.258	0.571	0.295	0.106	0.261	2.682	4.301	0.338	0.925	0.317	0.423	0.038	0.086	0.625	0.081	0.522	0.041	0.056	0.069	0.023	0.226
2667	chr14	70302638	70317834	+	0	NA	Intergenic	Intergenic	-35878	NM_001034852	64093	Hs.497349	NM_022137	ENSG00000198732	SMOC1	OAS	SPARC related modular calcium binding 1	protein-coding	2.475	0.921	0.830	1.106	2.204	1.096	1.753	0.153	0.192	1.709	0.932	0.530	0.841	0.029	0.085	0.297	0.124	0.181	0.189	0.925	0.868	4.159	1.754	0.251	0.239	0.680	1.113	1.134	nan	1.273	1.148	0.271	0.380	5.909	6.530	0.343	1.077	3.310	nan	0.069	0.293	2.323	2.401	1.753	0.530	0.071	0.642	0.162	0.422
7144	chr7	6047872	6061325	+	0	NA	5' UTR (NM_001326610, exon 2 of 5)	5' UTR (NM_001326610, exon 2 of 5)	4242	NM_001326611	7965	Hs.301613	NM_006303	ENSG00000106305	AIMP2	JTV-1|JTV1|P38	aminoacyl tRNA synthetase complex interacting multifunctional protein 2	protein-coding	3.219	2.210	2.889	2.085	3.431	1.825	1.410	2.359	0.720	1.114	0.739	2.300	nan	2.467	0.208	2.206	2.729	1.937	nan	2.449	2.287	nan	1.009	5.549	5.581	1.592	2.492	nan	3.956	1.576	1.680	3.131	3.190	2.254	2.864	2.118	3.273	2.005	1.004	3.538	3.611	0.418	2.270	1.410	2.300	0.456	1.490	1.387	0.768
6945	chr6	124516219	124530035	+	0	NA	intron (NM_001300737, intron 2 of 7)	intron (NM_001300737, intron 2 of 7)	-81024	NM_001300740	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding	0.841	1.014	0.994	0.452	2.478	1.269	0.120	0.130	0.117	0.707	0.745	0.337	0.432	0.024	0.113	0.449	0.354	0.263	0.271	0.470	0.590	4.542	1.445	0.494	0.364	1.640	1.632	1.479	1.312	0.400	0.217	0.178	0.187	4.065	5.380	0.260	0.340	0.618	0.375	0.210	0.309	1.457	0.023	0.120	0.337	0.042	0.105	0.050	0.014
4080	chr19	42572464	42582054	+	0	NA	intron (NM_001330519, intron 1 of 1)	intron (NM_001330519, intron 1 of 1)	-3031	NM_022752	64763	Hs.13323	NM_022752	ENSG00000105732	ZNF574	FP972	zinc finger protein 574	protein-coding	3.843	2.019	3.338	1.925	3.647	2.212	3.508	1.264	0.334	0.948	0.414	3.965	3.245	2.087	0.120	2.984	2.973	2.509	3.629	4.486	4.369	5.890	3.127	9.491	9.848	3.339	4.248	3.859	6.179	4.994	4.532	4.354	6.117	3.179	3.219	4.940	5.274	2.619	1.440	2.476	2.685	0.729	0.704	3.508	3.965	1.695	1.537	2.221	1.726
4040	chr19	36979210	36982034	+	0	NA	promoter-TSS (NM_032838)	promoter-TSS (NM_032838)	93	NR_036504	728752	Hs.729762	NR_036504	ENSG00000267309	LOC728752	-	uncharacterized LOC728752	ncRNA	6.934	4.063	4.866	16.834	5.807	3.549	5.237	2.751	0.339	2.747	1.089	8.340	30.241	8.222	0.274	9.467	8.724	2.117	3.311	15.620	12.507	12.612	3.750	23.185	24.207	3.879	4.797	10.524	14.402	nan	10.760	10.739	16.057	8.516	7.629	6.932	6.953	6.272	3.179	6.168	5.604	1.391	3.701	5.237	8.340	1.788	2.522	5.301	1.832
7149	chr7	7858667	7870594	+	0	NA	intron (NM_001302348, intron 3 of 3)	intron (NM_001302348, intron 3 of 3)	-106392	NM_002947	6119	Hs.487540	NM_002947	ENSG00000106399	RPA3	REPA3|RP-A p14	replication protein A3	protein-coding	1.472	1.128	1.435	0.354	0.655	0.351	1.342	0.157	0.121	0.600	0.252	2.418	nan	0.082	0.143	0.678	0.541	0.253	nan	4.914	5.912	nan	0.684	0.445	0.481	1.089	1.267	nan	0.853	0.479	0.258	0.178	0.359	1.329	2.017	0.471	1.437	0.898	0.636	1.587	0.422	0.289	0.220	1.342	2.418	0.089	0.196	0.084	0.199
3985	chr19	16201994	16224238	+	0	NA	3' UTR (NM_003290, exon 8 of 8)	3' UTR (NM_003290, exon 8 of 8)	-9374	NM_005370	4218	Hs.642874	NM_005370	ENSG00000167461	RAB8A	MEL|RAB8	RAB8A, member RAS oncogene family	protein-coding	1.653	1.053	1.584	0.513	0.821	0.526	0.615	0.429	0.242	0.367	0.223	0.548	0.977	0.544	0.090	0.617	0.751	1.037	1.702	1.284	1.250	1.495	0.735	1.307	1.263	0.993	1.480	1.017	1.358	1.593	1.219	0.332	0.573	0.700	0.781	1.487	4.013	0.913	0.675	0.546	0.379	0.163	0.386	0.615	0.548	0.208	0.406	0.121	1.286
2780	chr14	103977329	104018128	+	0	NA	intron (NM_152307, intron 2 of 3)	L2b|LINE|L2	2219	NM_152307	115708	Hs.525610	NM_152307	ENSG00000166166	TRMT61A	C14orf172|GCD14|Gcd14p|TRM61|hTRM61	tRNA methyltransferase 61A	protein-coding	4.689	2.268	3.071	2.699	1.411	0.713	2.086	0.573	0.213	0.726	0.377	1.229	2.898	0.525	0.098	2.150	3.067	0.870	1.258	2.695	2.481	4.541	1.883	0.838	0.783	1.492	2.227	2.023	3.180	2.238	2.184	1.534	2.321	2.088	2.216	1.002	1.300	1.665	0.998	2.937	1.658	0.478	0.940	2.086	1.229	0.943	0.551	1.147	0.503
446	chr1	110872758	110891537	+	0	NA	promoter-TSS (NR_036595)	promoter-TSS (NR_036595)	202	NM_022768	64783	Hs.435947	NM_022768	ENSG00000162775	RBM15	OTT|OTT1|SPEN	RNA binding motif protein 15	protein-coding	nan	1.954	2.213	2.265	2.542	1.366	1.531	1.303	0.180	0.924	0.471	2.225	4.556	1.988	0.148	2.567	2.323	2.664	3.776	3.904	nan	3.305	1.993	8.172	8.560	2.576	3.182	3.325	5.292	3.537	3.184	2.904	4.580	1.645	2.100	3.161	3.732	2.044	1.173	2.233	1.936	0.361	1.600	1.531	2.225	0.471	0.752	1.640	1.027
5942	chr4	77405290	77547928	+	0	NA	intron (NM_020859, intron 1 of 10)	intron (NM_020859, intron 1 of 10)	-18112	NR_039654	100616299		NR_039654	ENSG00000263445	MIR4450	mir-4450	microRNA 4450	ncRNA	0.679	0.656	0.564	0.315	0.692	0.412	0.189	0.440	0.123	0.155	0.134	0.477	0.435	3.711	0.151	0.314	0.184	0.536	1.969	0.328	0.411	1.119	0.405	0.303	0.307	0.157	0.255	1.040	1.096	0.380	0.225	0.144	0.194	0.184	0.167	0.122	0.245	0.662	0.498	0.058	0.169	0.025	0.082	0.189	0.477	0.014	0.132	0.060	0.055
2181	chr12	121194523	121208077	+	0	NA	3' UTR (NM_139015, exon 11 of 11)	3' UTR (NM_139015, exon 11 of 11)	37759	NM_000017	35	Hs.507076	NM_000017	ENSG00000122971	ACADS	ACAD3|SCAD	acyl-CoA dehydrogenase, C-2 to C-3 short chain	protein-coding	0.841	0.873	0.868	0.893	1.644	0.960	1.834	0.150	0.048	0.837	0.417	3.907	1.332	0.074	0.129	0.676	0.775	0.590	0.789	3.392	3.574	nan	0.689	0.475	0.461	0.296	0.508	2.469	3.691	0.317	0.198	0.593	0.915	0.933	1.185	0.269	0.514	2.085	1.236	0.529	5.769	0.141	1.209	1.834	3.907	0.043	0.048	0.607	0.092
2229	chr13	20434990	20440176	+	0	NA	intron (NM_001039650, intron 1 of 5)	CpG	193	NM_001142684	9205	Hs.530988	NM_014242	ENSG00000132950	ZMYM5	HSPC050|MYM|ZNF198L1|ZNF237	zinc finger MYM-type containing 5	protein-coding	5.523	5.033	5.980	9.244	3.843	2.308	3.903	7.031	0.747	2.318	0.854	8.143	10.478	4.321	0.125	9.039	9.481	7.784	nan	22.384	21.325	7.159	3.762	8.927	9.941	7.035	8.043	6.758	11.617	16.847	16.073	6.317	12.184	4.822	4.411	9.327	8.972	4.713	2.472	4.771	4.511	1.245	8.828	3.903	8.143	1.215	3.896	3.609	3.767
1599	chr11	100622154	100646535	+	0	NA	intron (NM_152432, intron 1 of 23)	AluSx|SINE|Alu	-75658	NR_133571	100128386	Hs.635125	NR_133571	ENSG00000248027	LOC100128386	-	uncharacterized LOC100128386	ncRNA	0.850	0.953	0.893	0.054	0.302	0.192	0.242	0.271	0.073	0.163	0.129	0.039	0.539	0.076	0.120	0.548	0.287	0.253	0.468	0.505	0.525	0.118	0.077	0.536	0.555	3.589	4.159	0.130	0.175	0.540	0.266	0.183	0.285	0.442	0.365	0.817	1.847	1.091	0.745	0.027	0.058	0.074	0.646	0.242	0.039	0.316	0.370	0.032	0.532
6283	chr5	59037829	59042094	+	0	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	24477	NM_001197218	5144	Hs.117545	NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding	nan	nan	1.817	0.105	3.037	1.966	0.996	0.147		2.421	0.586	0.777	0.499	0.280	0.099	0.301	0.113	0.150	0.477	0.539	0.539	7.075	10.349	0.022	0.013	2.757	3.465	0.589	0.603	nan	0.244	0.059	0.094	6.280	9.253	1.273	3.639	1.500	0.816	0.065	0.105	1.002	0.057	0.996	0.777	0.022	0.296		0.247
3013	chr16	691006	700101	+	0	NA	intron (NR_138611, intron 1 of 3)	AluSx1|SINE|Alu	2499	NR_138611	84331	Hs.706105	NM_032371	ENSG00000172366	MCRIP2	C16orf14|FAM195A|c349E10.1	MAPK regulated corepressor interacting protein 2	protein-coding	2.574	nan	2.204	3.320	2.302	0.953	3.039	0.912	0.158	1.871	0.713	2.737	5.773	1.164	0.072	3.226	3.368	1.702	2.640	2.492	2.635	nan	2.613	4.928	5.232	2.314	nan	3.297	5.016	3.085	3.277	1.569	2.720	4.372	4.321	2.037	2.093	2.104	1.241	1.908	5.945	0.848	0.596	3.039	2.737	1.763	1.981	0.764	0.701
2306	chr13	51562815	51577075	+	0	NA	intron (NR_003923, intron 16 of 16)	intron (NR_003923, intron 16 of 16)	70348	NR_003923	2974	Hs.411573	NM_004129	ENSG00000123201	GUCY1B2	GC-SB2	guanylate cyclase 1 soluble subunit beta 2 (pseudogene)	pseudo	1.474	nan	nan	0.190	0.217	0.162	0.624	0.169	0.035	0.706	1.066	2.000	4.611	0.062	0.040	1.049	0.845	0.133	0.188	1.213	1.533	nan	1.012	0.180	0.221	4.517	5.149	0.717	0.868	2.596	2.630	0.347	0.555	4.830	5.872	0.572	nan	1.037	0.553	0.093	0.368	1.872	1.266	0.624	2.000	1.002	0.199	0.110	0.113
1149	chr10	77791533	77796759	+	0	NA	intron (NR_131178, intron 3 of 7)	intron (NR_131178, intron 3 of 7)	251627	NM_032024	83938	Hs.118161	NM_032024	ENSG00000148655	C10orf11	CDA017	chromosome 10 open reading frame 11	protein-coding	0.710	nan	1.064	0.133	0.954	0.557	0.489	0.292	0.185	0.121	0.091	1.677	2.078	0.063	0.104	6.661	10.447	3.263	2.966	0.676	0.830	2.674	0.391	0.373	0.457	0.113	0.402	1.045	nan	0.288	0.170	8.032	10.544	0.923	0.432	0.295	nan	1.239	0.576	0.171	0.188	0.203	0.164	0.489	1.677	0.187	0.349	8.513	0.095
8210	chr9	96564505	96591070	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	-3852	NR_036254	100422927		NR_036254	ENSG00000265347	MIR4291	-	microRNA 4291	ncRNA	0.858	nan	0.763	3.243	5.747	3.059	0.400	0.062	0.037	0.440	0.183	3.912	1.409	0.050	0.050	0.202	0.184	0.139	nan	4.478	4.835	3.655	0.827	0.198	0.291	0.088	0.224	5.154	4.224	1.655	1.556	0.194	0.266	1.095	1.146	0.218	0.282	2.604	1.314	0.521	0.588	0.192	0.095	0.400	3.912	0.051	1.426	0.053	0.060
2407	chr13	101797612	101812145	+	0	NA	intron (NM_052867, intron 15 of 43)	intron (NM_052867, intron 15 of 43)	-208260	NR_047015	100874161	Hs.143791	NR_047015		LINC00411	-	long intergenic non-protein coding RNA 411	ncRNA	0.679	0.823	0.526	0.106	0.378	0.232	0.811	0.107	0.035	0.098	0.063	0.140	0.512	0.015	0.064	1.390	0.818	0.859	0.548	0.507	0.569	0.802	0.243	0.146	0.195	0.609	nan	0.260	0.247	0.572	0.388	0.110	0.244	0.081	0.068	0.481	nan	0.307	0.267	6.569	0.377	0.013	0.223	0.811	0.140	0.200	0.135	0.029	0.240
2866	chr15	46561531	46574640	+	0	NA	Intergenic	Intergenic	570692	NR_135680	105370802	Hs.447522	NR_135680	ENSG00000259200	LOC105370802	-	uncharacterized LOC105370802	ncRNA	2.013	0.695	nan	0.671	2.889	1.348	1.537	0.102	0.038	1.985	1.123	4.689	0.959	0.025	0.067	2.746	2.866	0.342	0.228	6.404	7.333	5.268	3.201	1.078	1.113	0.306	nan	0.288	0.529	8.140	8.287	1.629	3.125	4.691	4.013	2.014	3.964	3.770	2.217	0.894	1.547	0.863	0.968	1.537	4.689	1.308	0.140	1.221	0.755
2443	chr13	110461143	110474224	+	0	NA	Intergenic	ERVL-int|LTR|ERVL	-28769	NM_003749	8660	Hs.442344	NM_003749	ENSG00000185950	IRS2	IRS-2	insulin receptor substrate 2	protein-coding	0.549	nan	0.819	1.258	0.422	0.180	0.196	0.040	0.037	0.071	0.042	0.359	1.063	0.033	0.070	0.512	0.374	0.449	0.641	0.992	1.001	5.872	1.553	0.149	0.145	0.026	0.062	2.031	1.604	0.504	0.339	0.679	0.908	0.197	0.251	0.180	0.306	0.449	0.370	1.676	0.994	0.066	1.892	0.196	0.359	0.375	0.566	0.214	0.047
5559	chr3	134817912	134830052	+	0	NA	intron (NM_004441, intron 3 of 15)	intron (NM_004441, intron 3 of 15)	309883	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding	1.128	nan	nan	0.630	1.946	0.896	0.924	0.085	0.155	0.284	0.179	0.108	0.477	0.018	0.071	0.389	0.186	0.141	0.297	0.644	0.734	8.001	1.842	0.179	0.166	0.267	0.462	1.782	1.636	nan	0.615	0.821	0.984	0.835	0.975	0.287	0.415	0.197	0.367	0.298	0.366	0.165	0.125	0.924	0.108	0.423	0.050	0.446	0.072
7339	chr7	77308942	77328887	+	0	NA	intron (NR_134251, intron 1 of 3)	intron (NR_134251, intron 1 of 3)	6668	NR_134251	100505854	Hs.72451	NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator (non-protein coding)	ncRNA	nan	1.052	1.895	0.979	1.254	0.593	0.931	1.378	0.489	1.077	0.657	1.275	2.050	1.489	0.214	1.954	1.844	1.604	nan	2.398	2.092	1.908	0.838	1.488	1.497	0.903	nan	1.127	nan	2.300	2.463	2.256	3.499	1.462	1.573	2.697	4.496	1.316	0.828	0.860	1.365	0.415	1.112	0.931	1.275	0.384	0.487	1.965	0.719
8146	chr9	66970858	66974282	+	0	NA	intron (NR_135597, intron 4 of 4).3	ALR/Alpha|Satellite|centr	49603	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA	12.324	14.741	11.427	2.251	6.750	2.903	6.431	3.396	12.067	3.935	6.019	2.234	7.570	1.137	4.553	10.052	5.658	6.193	8.591	7.328	9.487	3.816	3.310	6.084	6.038	4.760	6.416	5.726	4.853	9.160	3.613	4.049	6.247	1.958	3.572	4.174	5.370	4.095	5.131	0.972	1.846	2.086	1.368	6.431	2.234	0.969	1.210	1.037	1.040
255	chr1	41383325	41386533	+	0	NA	Intergenic	AluSx|SINE|Alu	-56911	NM_133467	163732	Hs.355820	NM_133467	ENSG00000179862	CITED4	-	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein-coding	21.239	0.721	nan	0.461	1.033	0.764	0.051	0.233	0.178	0.244	0.185	0.925	0.638	0.198	0.071	9.200	10.583	2.645	3.132	0.459	0.468	2.331	0.788	2.330	2.123	0.444	nan	nan	1.684	0.321	0.258	12.209	16.526	0.598	0.989	0.364	0.398	0.577	0.440	0.036	0.027	0.118	1.361	0.051	0.925	0.120	0.062	6.625	0.079
4688	chr2	208193488	208205329	+	0	NA	Intergenic	Intergenic	-65260	NR_031633	100302130		NR_031633	ENSG00000221628	MIR1302-4	MIRN1302-4|hsa-mir-1302-4	microRNA 1302-4	ncRNA	1.012	nan	1.216	0.551	3.412	1.590	1.144	0.990	0.122	0.144	0.097	0.314	4.855	0.294	0.074	0.466	0.315	0.352	0.533	0.249	0.278	0.390	0.136	0.637	0.709	2.179	2.308	0.537	0.508	0.492	0.286	0.181	0.273	3.852	5.836	0.455	1.012	0.355	0.203	1.152	0.701	0.816	0.086	1.144	0.314	0.254	0.902	0.092	0.157
2230	chr13	20530794	20536573	+	0	NA	intron (NM_001190965, intron 1 of 24)	intron (NM_001190965, intron 1 of 24)	709	NM_001190965	7750	Hs.507433	NM_003453	ENSG00000121741	ZMYM2	FIM|MYM|RAMP|SCLL|ZNF198	zinc finger MYM-type containing 2	protein-coding	7.421	5.406	7.071	9.367	4.910	2.714	3.865	6.344	0.587	3.164	0.969	6.525	11.116	2.502	0.096	11.094	11.611	5.082	nan	24.159	22.718	7.104	3.402	10.353	9.868	3.303	3.845	8.121	12.080	17.726	18.519	6.922	11.652	5.100	4.080	8.558	7.152	4.935	2.655	3.905	4.576	1.483	7.031	3.865	6.525	1.483	4.034	4.056	3.741
5364	chr3	45651402	45659994	+	0	NA	intron (NM_014240, intron 1 of 7)	intron (NM_014240, intron 1 of 7)	19375	NM_014240	8994	Hs.193370	NM_014240	ENSG00000144791	LIMD1	-	LIM domains containing 1	protein-coding	0.760	nan	nan	0.154	0.128	0.037	0.104	0.285	0.075	0.073	0.068	0.153	0.334	0.076	0.067	3.463	5.000	10.371	4.923	0.394	0.322	0.279	0.205	1.377	1.329	0.478	0.844	0.383	0.474	0.345	0.307	5.822	4.177	0.081	0.078	0.179	0.238	0.428	0.335	0.026	0.020	0.045	0.074	0.104	0.153	0.090	0.106	2.964	0.099
6026	chr4	139807470	139842401	+	0	NA	intron (NR_133945, intron 2 of 2)	MIR|SINE|MIR	108865	NR_133945	105377448	Hs.200280	NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA	nan	nan	1.249	3.644	4.997	2.582	0.347	0.152	0.107	2.913	1.334	7.638	6.286	0.043	0.080	0.232	0.140	0.674	1.920	2.958	3.342	5.865	4.005	0.181	0.177	0.360	0.563	2.418	4.174	0.522	0.332	0.957	1.437	2.595	1.964	0.860	nan	2.522	1.274	4.327	3.122	0.575	0.233	0.347	7.638	0.147	1.134	1.373	0.874
3422	chr17	43119614	43142374	+	0	NA	intron (NM_001288654, intron 1 of 4)	AluSq|SINE|Alu	-1965	NM_001128631	79877	Hs.463148	NM_024819	ENSG00000172992	DCAKD	-	dephospho-CoA kinase domain containing	protein-coding	2.344	2.685	nan	2.258	3.234	1.591	1.799	1.222	0.362	1.055	0.645	1.729	4.166	1.640	0.169	2.583	2.331	2.984	4.722	2.537	nan	2.925	1.887	5.877	6.382	2.034	2.851	3.671	nan	4.118	3.297	1.649	2.440	2.039	2.882	2.653	3.803	1.812	0.922	2.745	1.543	0.538	1.048	1.799	1.729	0.866	1.069	0.721	1.446
4740	chr2	225263230	225271334	+	0	NA	promoter-TSS (NM_001122779)	promoter-TSS (NM_001122779)	-571	NM_001122779	79843	Hs.147585	NM_024785	ENSG00000124019	FAM124B	-	family with sequence similarity 124 member B	protein-coding	nan	0.556	0.920	0.033	0.376	0.184	0.222	0.145	0.199	0.019	0.120	0.118	nan	0.013	0.107	0.528	0.272	0.187	0.264	0.207	0.296	0.200	0.059	0.239	0.216	5.359	5.826	0.214	nan	0.480	0.560	0.216	0.240	0.093	0.144	0.228	nan	0.216	0.240	0.041	0.022	0.036	0.129	0.222	0.118	0.096	0.062	0.024	0.046
4146	chr19	55717940	55730568	+	0	NA	Intergenic	Intergenic	-3380	NM_001161440	5794	Hs.179770	NM_002842	ENSG00000080031	PTPRH	R-PTP-H|SAP1	protein tyrosine phosphatase, receptor type H	protein-coding	1.556	2.878	1.041	2.228	5.239	2.664	1.526	0.449	0.154	1.549	0.627	2.531	2.772	2.255	0.174	2.502	3.521	0.435	0.802	1.801	1.484	6.435	3.036	0.339	0.358	1.439	1.825	4.419	6.669	1.083	0.983	2.672	2.060	1.910	3.386	1.561	2.148	2.250	1.052	1.697	1.434	0.294	0.820	1.526	2.531	0.571	1.436	0.665	0.626
7380	chr7	94069314	94084048	+	0	NA	Intergenic	L1ME4a|LINE|L1	52808	NM_000089	1278	Hs.489142	NM_000089	ENSG00000164692	COL1A2	OI4	collagen type I alpha 2 chain	protein-coding	nan	1.425	nan	0.590	2.222	1.141	0.326	0.122	0.131	0.811	0.686	1.593	0.517	0.155	0.180	0.485	0.270	0.320	0.567	3.766	3.935	3.132	0.967	0.312	0.253	1.808	2.191	3.420	3.022	1.931	1.578	0.204	0.350	0.948	0.950	0.758	nan	5.826	2.864	0.883	0.417	0.188	0.097	0.326	1.593	0.124	0.933	0.067	0.210
8253	chr9	117664689	117694853	+	0	NA	intron (NM_001252290, intron 2 of 4)	intron (NM_001252290, intron 2 of 4)	13104	NM_001244	944	Hs.494901	NM_001244	ENSG00000106952	TNFSF8	CD153|CD30L|CD30LG|TNLG3A	tumor necrosis factor superfamily member 8	protein-coding	0.732	1.404	nan	1.066	0.610	0.393	0.304	0.158	0.064	0.436	0.235	2.890	1.916	0.022	0.095	1.950	2.539	1.008	2.781	2.993	4.048	1.170	0.480	1.532	1.592	0.169	0.351	4.579	nan	0.727	0.422	2.544	3.885	1.228	1.504	0.122	0.214	nan	0.997	3.809	0.375	0.504	0.262	0.304	2.890	0.488	0.578	3.499	0.025
5176	chr22	17672047	17681228	+	0	NA	intron (NM_001282227, intron 4 of 9)	intron (NM_001282227, intron 4 of 9)	4036	NM_177405	51816	Hs.170310	NM_017424	ENSG00000093072	CECR1	ADA2|ADGF|IDGFL|PAN|SNEDS	cat eye syndrome chromosome region, candidate 1	protein-coding	0.767	nan	0.508	1.081	0.815	0.385	0.899	0.063	0.123	0.878	0.322	1.561	0.196	0.106	0.095	0.628	0.766	0.174	0.739	0.426	0.472	1.274	0.362	3.335	3.562	0.245	0.419	2.672	4.337	1.734	1.349	0.178	0.182	2.627	2.640	0.517	0.687	4.332	2.479	0.036	1.356	0.475	0.234	0.899	1.561	0.032	1.069	0.022	0.121
7945	chr8	135718661	135748452	+	0	NA	Intergenic	Intergenic	-8264	NR_110323	57623	Hs.446172	NM_020863	ENSG00000066827	ZFAT	AITD3|ZFAT1|ZNF406	zinc finger and AT-hook domain containing	protein-coding	nan	1.150	1.764	2.810	1.657	0.881	0.763	0.556	0.181	0.147	0.170	2.231	2.730	0.485	0.077	1.260	1.288	0.739	1.096	2.998	3.173	4.053	2.098	nan	3.960	0.634	0.871	2.511	2.813	1.313	1.078	1.279	1.631	0.944	0.920	1.412	2.119	1.507	1.029	1.155	1.573	0.192	0.637	0.763	2.231	0.172	0.695	0.518	0.670
7210	chr7	26191360	26197847	+	0	NA	intron (NM_004289, intron 1 of 3)	intron (NM_004289, intron 1 of 3)	2756	NM_004289	9603	Hs.404741	NM_004289	ENSG00000050344	NFE2L3	NRF3	nuclear factor, erythroid 2 like 3	protein-coding	3.231	1.683	5.168	1.021	0.860	0.391	1.003	0.393	0.150	0.649	0.506	0.522	3.435	1.071	0.105	4.683	4.548	8.247	10.603	1.372	1.141	4.714	1.257	2.815	2.900	0.889	1.662	2.303	3.368	1.381	2.201	3.422	4.407	0.858	0.522	2.505	nan	0.853	0.720	0.856	2.184	0.126	0.646	1.003	0.522	0.270	0.622	1.695	1.997
7431	chr7	108034215	108075248	+	0	NA	intron (NM_005010, intron 1 of 27)	intron (NM_005010, intron 1 of 27)	42110	NM_001193584	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding	nan	1.321	1.021	0.319	0.938	0.491	0.713	0.450	0.078	0.381	0.285	0.816	0.583	0.074	0.157	0.648	0.826	1.599	1.017	0.737	0.769	2.199	0.647	1.503	1.617	0.719	1.003	0.849	1.000	0.626	0.315	0.837	1.158	1.508	2.422	0.464	nan	2.024	1.210	1.867	0.576	0.320	0.344	0.713	0.816	0.299	0.231	0.988	0.120
692	chr1	180878797	180910720	+	0	NA	intron (NM_020950, intron 3 of 8)	intron (NM_020950, intron 3 of 8)	12445	NM_020950	57710	Hs.734816	NM_020950	ENSG00000135835	KIAA1614	-	KIAA1614	protein-coding	nan	nan	8.403	0.293	0.316	0.232	0.986	0.991	0.242	0.685	0.397	0.371	2.299	0.127	0.090	1.349	2.521	1.354	2.568	2.185	nan	1.061	0.341	nan	0.608	3.661	5.190	0.635	0.779	2.484	3.353	1.133	1.146	2.233	2.075	2.122	nan	1.645	1.054	2.109	1.245	0.870	0.849	0.986	0.371	0.596	0.755	0.221	1.832
7697	chr8	61797520	61804302	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	79396	NR_034003	100130298	Hs.636194	NR_034003		LOC100130298	-	hCG1816373-like	ncRNA	1.153	0.768	0.797	0.181	0.320	0.189	0.143	0.078	0.048	0.161	0.123	0.159	0.297	0.032	0.102	0.241	0.190	0.204	0.329	0.394	0.622	0.389	0.158	0.074	0.121	0.361	nan	0.265	0.249	nan	0.200	0.129	0.240	0.140	0.164	0.286	0.554	1.110	0.787	0.041	0.092	0.098	0.129	0.143	0.159	5.211	0.078	0.028	0.151
6487	chr5	143705737	143720901	+	0	NA	intron (NM_020768, intron 3 of 3)	MLT1H2|LTR|ERVL-MaLR	162882	NM_020768	57528	Hs.7093	NM_020768	ENSG00000183775	KCTD16	-	potassium channel tetramerization domain containing 16	protein-coding	nan	1.138	0.724	1.962	0.337	0.105	0.251	0.106	0.075	1.708	1.041	0.480	4.476	0.029	0.111	0.169	0.085	0.215	0.235	1.253	1.232	5.548	1.784	0.034	0.061	2.471	3.071	2.199	2.665	0.432	0.178	0.120	0.152	3.605	4.332	0.234	0.615	2.170	0.842	0.371	0.474	1.214	0.052	0.251	0.480	0.115	0.676	0.013	0.115
1907	chr12	32019861	32032088	+	0	NA	Intergenic	LTR1B|LTR|ERV1	14163	NR_135029	105369723	Hs.736954	NR_135029	ENSG00000255760	LOC105369723	-	uncharacterized LOC105369723	ncRNA	1.566	nan	1.368	0.617	0.230	0.211	0.726	0.099	0.066	0.332	0.225	0.488	0.599	0.071	0.121	0.392	0.277	0.239	0.469	0.539	0.623	1.280	0.157	0.440	0.469	0.489	0.847	0.344	0.304	0.627	0.506	0.175	0.408	8.246	8.992	0.222	0.426	1.513	0.734	0.109	0.276	1.207	0.404	0.726	0.488	0.183	0.232	0.201	0.112
4961	chr20	44598490	44603202	+	0	NA	promoter-TSS (NM_022095)	promoter-TSS (NM_022095)	-13	NM_022095	63925	Hs.174193	NM_022095	ENSG00000198026	ZNF335	MCPH10|NIF-1|NIF1|NIF2	zinc finger protein 335	protein-coding	nan	nan	3.372	5.660	5.713	3.422	5.156	3.850	0.379	1.975	0.977	4.266	8.453	5.175	0.128	11.491	10.483	6.250	9.196	7.369	8.799	12.505	9.798	11.288	12.414	4.854	5.553	7.962	11.289	nan	9.023	8.886	10.200	3.983	5.057	7.935	6.360	2.038	1.204	2.159	4.142	0.789	3.339	5.156	4.266	1.532	2.057	2.266	2.782
8083	chr9	21545329	21620761	+	0	NA	Intergenic	Intergenic	-23348	NR_027054	554202	Hs.458096	NR_027054		MIR31HG	hsa-lnc-31	MIR31 host gene	ncRNA	0.550	nan	nan	0.073	0.211	0.098	0.157	1.336	0.133	0.104	0.105	0.071	0.246	5.262	0.171	0.175	0.090	0.504	0.716	0.416	0.482	0.213	0.124	0.081	0.072	0.181	0.366	0.119	0.151	0.416	0.228	0.148	0.208	0.081	0.118	0.131	0.184	0.709	0.738	0.023	0.062	0.006	0.018	0.157	0.071	0.009	0.035	0.046	0.059
854	chr1	212808034	212813990	+	0	NA	Intergenic	AluSp|SINE|Alu	13223	NM_153606	149647	Hs.129293	NM_153606	ENSG00000162771	FAM71A	GARI-L4	family with sequence similarity 71 member A	protein-coding	1.942	1.786	2.123	0.987	0.916	0.513	0.962	1.865	0.161	1.108	0.559	0.894	nan	0.073	0.113	0.469	0.324	13.725	3.953	2.282	1.629	nan	0.407	3.219	3.349	1.207	nan	5.020	2.870	0.896	1.070	0.133	0.267	1.056	1.327	0.869	2.553	2.267	1.517	0.483	0.135	0.193	0.013	0.962	0.894	0.359	2.219	0.114	0.627
3120	chr16	31468793	31472629	+	0	NA	5' UTR (NM_001105247, exon 1 of 6)	5' UTR (NM_001105247, exon 1 of 6)	394	NM_024742	79798	Hs.732945	NM_024742	ENSG00000140691	ARMC5	AIMAH2	armadillo repeat containing 5	protein-coding	5.538	2.777	4.318	7.128	5.843	3.477	4.345	2.801	0.297	1.879	0.524	5.004	14.125	3.862	0.078	5.264	5.441	4.759	7.380	5.615	4.489	12.966	5.839	11.884	12.770	4.918	5.993	11.060	15.697	7.465	8.107	3.899	5.865	6.357	6.714	3.826	5.832	3.807	1.835	4.504	3.438	1.241	2.438	4.345	5.004	1.630	4.490	1.646	1.477
6072	chr4	168918719	168934045	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-87306	NM_007193	11199	Hs.188401	NM_007193	ENSG00000109511	ANXA10	ANX14	annexin A10	protein-coding	nan	nan	nan	0.132	3.576	1.516	0.067	0.101	0.134	0.082	0.091	0.155	0.197	0.029	0.074	0.201	0.179	0.256	0.349	0.184	0.197	0.092	0.036	0.165	0.140	0.155	0.180	0.217	0.210	0.300	0.117	0.146	0.221	0.041	0.081	0.135	0.188	0.304	0.224		0.023		0.228	0.067	0.155	0.012	0.040	0.045	0.048
3769	chr18	42517272	42535796	+	0	NA	intron (NM_015559, intron 3 of 5)	intron (NM_015559, intron 3 of 5)	23597	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA	nan	1.317	0.741	1.877	0.705	0.302	3.208	0.135	0.097	0.864	0.545	2.119	2.087	0.036	0.085	0.467	0.399	0.316	0.682	3.519	3.414	3.074	1.420	0.051	0.050	0.478	0.711	0.816	1.377	0.368	0.277	0.159	0.215	2.976	2.372	0.260	nan	4.781	2.530	2.508	0.177	0.627	0.084	3.208	2.119	0.110	0.366	0.037	0.119
6575	chr5	180668019	180676083	+	0	NA	Intergenic	Intergenic	-1145	NM_006098	10399	Hs.5662	NM_006098	ENSG00000204628	RACK1	GNB2L1|Gnb2-rs1|H12.3|HLC-7|PIG21	receptor for activated C kinase 1	protein-coding	5.318	3.623	5.425	4.072	3.262	1.549	2.218	2.961	0.584	3.069	1.296	5.638	13.002	6.890	0.235	3.606	3.993	6.557	9.549	5.465	4.873	6.918	2.809	7.491	7.474	5.236	7.331	6.462	8.735	7.536	9.132	3.195	5.353	6.924	9.466	6.525	7.462	2.891	1.310	3.171	3.543	1.390	1.858	2.218	5.638	1.566	3.945	1.688	2.560
4023	chr19	34174393	34182124	+	0	NA	intron (NM_022467, intron 1 of 3)	intron (NM_022467, intron 1 of 3)	2824	NM_022467	64377	Hs.165724	NM_022467	ENSG00000124302	CHST8	GALNAC4ST1|GalNAc4ST|PSS3	carbohydrate sulfotransferase 8	protein-coding	1.000	0.899	3.189	0.550	0.795	0.413	0.166	0.087	0.042	0.101	0.042	0.082	2.116	0.140	0.095	1.079	1.648	0.081	0.033	0.307	0.403	0.154	0.071	0.226	0.094	0.206	0.421	0.128	0.162	nan	10.956	0.960	0.941	0.139	0.144	0.296	0.416	0.869	0.719	0.488	0.103		2.269	0.166	0.082	1.385	2.596	0.259	0.032
3020	chr16	1819991	1824585	+	0	NA	promoter-TSS (NM_002513)	promoter-TSS (NM_002513)	-578	NM_002513	4832	Hs.514065	NM_002513	ENSG00000103024	NME3	DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	3.359	nan	3.150	5.653	2.779	1.818	4.967	0.957	0.175	2.616	1.355	6.675	6.347	3.774	0.053	4.129	5.111	2.527	3.884	3.445	2.951	nan	2.927	6.873	7.037	2.339	nan	4.516	6.881	3.455	4.380	2.145	4.391	4.281	3.969	3.421	3.088	3.382	1.952	2.965	10.425	0.744	1.744	4.967	6.675	2.756	2.278	0.933	0.721
3550	chr17	73054436	73058490	+	0	NA	intron (NR_110834, intron 5 of 6)	intron (NR_110834, intron 5 of 6)	13184	NR_110834	23510	Hs.514468	NM_015353	ENSG00000180901	KCTD2	-	potassium channel tetramerization domain containing 2	protein-coding	1.884	1.153	1.500	0.215	0.651	0.394	0.189	0.245	0.277	0.345	0.345	0.138	0.505	0.144	0.126	0.797	0.908	0.387	0.606	0.718	0.866	0.340	0.154	0.495	0.502	nan	0.655	1.380	1.744	15.164	15.405	0.626	0.699	0.104	0.176	4.463	8.031	nan	0.346	0.855	0.215	0.024	0.126	0.189	0.138	0.264	0.673	0.388	2.931
7276	chr7	47796076	47837619	+	0	NA	intron (NM_138295, intron 56 of 56)	MLT1L|LTR|ERVL-MaLR	15773	NR_038407	84847	Hs.488236	NR_038407	ENSG00000146666	LINC00525	-	long intergenic non-protein coding RNA 525	ncRNA	1.625	0.992	nan	0.235	0.226	0.093	0.373	1.442	0.309	0.205	0.173	1.417	0.336	3.735	0.280	0.487	0.272	0.931	4.119	0.941	1.079	2.328	0.804	0.125	0.146	0.232	0.450	0.333	0.451	0.617	0.492	0.102	0.167	0.628	0.915	0.224	0.393	0.738	0.590	0.029	0.060	0.256	0.093	0.373	1.417	0.661	0.415	0.055	0.033
4392	chr2	66908646	66930234	+	0	NA	intron (NR_110156, intron 5 of 5)	intron (NR_110156, intron 5 of 5)	10919	NR_110264	101927577	Hs.380543	NR_110264	ENSG00000237179	LINC01797	-	long intergenic non-protein coding RNA 1797	ncRNA	1.220	0.723	nan	0.130	0.792	0.371	0.131	0.125	0.052	0.255	0.175	0.277	0.576	0.066	0.107	1.030	0.937	4.953	4.687	0.437	0.543	nan	0.278	0.557	0.528	0.436	0.612	0.646	0.505	0.906	0.488	0.846	2.724	0.647	0.522	1.036	2.598	0.333	0.325	0.064	0.127	0.185	0.184	0.131	0.277	0.032	0.047	0.870	1.642
5989	chr4	111536778	111545268	+	0	NA	intron (NM_153427, intron 4 of 4)	intron (NM_153427, intron 4 of 4)	3231	NM_000325	5308	Hs.643588	NM_000325	ENSG00000164093	PITX2	ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS	paired like homeodomain 2	protein-coding	0.457	0.693	0.426	0.078	0.114	0.056	0.106	0.991	0.056	0.054	0.058	0.057	2.262	0.319	0.091	1.050	1.802	9.414	10.341	0.104	0.156	0.046	0.061	0.138	0.170	0.146	0.206	1.566	2.021	0.296	0.190	0.290	0.993	1.526	0.854	0.306	0.638	0.257	0.168		0.356	0.302	0.101	0.106	0.057	0.024	1.147	0.269	0.161
3034	chr16	3173142	3186587	+	0	NA	intron (NR_110900, intron 3 of 5)	ERVL-B4-int|LTR|ERVL	5019	NR_110900	100507458	Hs.522143	NR_110900		ZNF213-AS1	-	ZNF213 antisense RNA 1 (head to head)	ncRNA	2.706	nan	2.149	2.694	2.383	1.180	2.067	0.677	0.324	0.896	0.502	1.124	6.022	1.320	0.130	2.681	2.432	1.341	2.028	2.639	2.474	nan	2.358	3.961	4.366	1.626	nan	2.427	3.433	2.484	2.258	1.192	1.753	2.450	2.548	1.893	2.123	2.256	1.072	1.130	2.885	0.374	0.872	2.067	1.124	0.797	0.985	0.405	0.494
2891	chr15	58836545	58858878	+	0	NA	intron (NM_000236, intron 6 of 8)	MIRb|SINE|MIR	-56777	NR_120338	101928694	Hs.655781	NR_120338	ENSG00000259293	LIPC-AS1	-	LIPC antisense RNA 1	ncRNA	1.023	0.849	1.192	0.070	0.593	0.247	0.149	0.470	0.108	0.102	0.108	0.606	0.448	0.024	0.077	0.327	0.245	0.346	0.775	1.853	2.262	0.367	0.111	0.177	0.240	0.517	0.748	0.491	0.510	3.142	3.171	0.285	0.364	0.284	0.263	1.020	2.916	0.490	0.428	0.585	0.231	0.042	0.045	0.149	0.606	0.088	0.145	0.094	1.385
1520	chr11	73357687	73366679	+	0	NA	intron (NM_021200, intron 3 of 7)	AluJb|SINE|Alu	2448	NM_001130036	58473	Hs.445489	NM_021200	ENSG00000021300	PLEKHB1	KPL1|PHR1|PHRET1	pleckstrin homology domain containing B1	protein-coding	nan	0.975	0.952	0.498	0.881	0.338	0.398	0.139	0.053	0.104	0.102	0.947	0.751	0.170	0.098	8.656	8.708	2.571	3.105	1.716	1.532	4.205	0.599	8.032	8.731	0.647	1.097	2.849	3.908	0.466	0.202	4.046	7.782	1.211	1.248	0.821	2.048	1.026	0.702	0.476	0.385	0.116	0.196	0.398	0.947	0.065	0.159	2.336	0.470
303	chr1	52411877	52446398	+	0	NA	intron (NM_002867, intron 2 of 4)	L2b|LINE|L2	27299	NM_002867	5865	Hs.123072	NM_002867	ENSG00000169213	RAB3B	-	RAB3B, member RAS oncogene family	protein-coding	1.268	1.635	1.861	1.870	5.475	2.761	0.915	0.146	0.135	2.292	0.912	1.332	2.064	0.056	0.125	1.093	1.147	0.329	0.485	4.195	4.646	4.791	2.500	2.191	2.247	0.292	0.583	4.149	5.559	0.733	0.563	0.722	0.930	0.793	1.023	0.765	nan	3.010	1.414	2.570	3.571	0.088	2.429	0.915	1.332	0.289	0.867	0.437	0.396
6268	chr5	55640786	55657052	+	0	NA	Intergenic	Intergenic	-119733	NM_024669	79722	Hs.436214	NM_024669	ENSG00000164512	ANKRD55	-	ankyrin repeat domain 55	protein-coding	nan	nan	0.674	0.114	0.203	0.137	0.222	0.196	0.050	0.058	0.098	0.059	0.280	0.046	0.138	0.267	0.145	1.365	8.386	0.216	0.265	nan	0.181	0.077	0.132	0.328	0.355	0.170	0.183	nan	0.150	0.073	0.098	0.173	0.296	0.209	0.510	0.385	0.340	0.030	0.158	0.024	0.059	0.222	0.059	0.048	0.056	0.016	0.146
614	chr1	160899041	160906969	+	0	NA	non-coding (NR_110695, exon 2 of 6)	non-coding (NR_110695, exon 2 of 6)	750	NR_110695	101928372		NR_110695	ENSG00000198358	LOC101928372	-	uncharacterized LOC101928372	ncRNA	1.210	nan	1.222	0.975	0.235	0.199	0.146	0.131	0.062	0.119	0.133	0.135	1.554	0.068	0.162	0.206	0.129	0.207	0.261	0.262	nan	0.136	0.038	0.079	0.114	0.145	0.309	0.310	nan	0.407	0.273	0.214	0.334	0.031	0.093	1.922	8.132	0.289	0.396	0.035	1.921	0.036	0.040	0.146	0.135	0.036	0.013	0.064	6.239
6931	chr6	122709356	122723129	+	0	NA	Intergenic	L2b|LINE|L2	-4454	NM_001135564	3298	Hs.158195	NM_004506	ENSG00000025156	HSF2	HSF 2|HSTF 2	heat shock transcription factor 2	protein-coding	2.354	1.342	1.948	1.310	1.592	0.872	1.188	0.374	0.105	0.853	0.430	1.447	2.010	0.505	0.097	1.952	3.184	2.029	2.756	2.083	2.141	6.821	6.679	2.446	2.345	0.748	0.965	1.249	2.846	1.874	1.867	0.744	1.573	1.236	1.120	1.595	1.702	1.118	0.983	0.317	0.903	0.151	0.391	1.188	1.447	0.155	0.605	0.283	0.638
2963	chr15	77881760	77901569	+	0	NA	Intergenic	MIR3|SINE|MIR	33205	NM_032808	84894	Hs.656765	NM_032808	ENSG00000169783	LINGO1	LERN1|LRRN6A|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	1.246	0.663	0.940	0.271	2.039	1.075	0.194	0.092	0.115	0.368	0.237	0.368	0.465	0.061	0.078	1.212	2.656	0.352	0.588	0.602	0.501	0.630	0.246	0.227	0.208	0.474	0.645	0.806	1.001	3.891	3.892	1.256	2.047	0.256	0.231	1.335	2.774	0.653	0.542	0.058	0.080	0.024	0.428	0.194	0.368	1.035	1.635	1.344	0.854
1765	chr12	2273605	2284675	+	0	NA	intron (NM_001129830, intron 3 of 47)	intron (NM_001129830, intron 3 of 47)	53507	NR_046578	100874234	Hs.372570	NR_046578	ENSG00000256025	CACNA1C-AS4	-	CACNA1C antisense RNA 4	ncRNA	1.075	nan	nan	0.071	0.229	0.101	0.441	0.270	0.159	0.299	0.171	0.196	0.398	0.078	0.133	0.245	0.188	0.195	0.207	nan	0.752	0.153	0.108	0.390	0.359	0.622	1.066	0.369	0.334	0.568	0.369	0.255	0.397	0.182	0.206	4.381	10.221	0.410	0.443	0.056	0.065	0.043	0.071	0.441	0.196	0.092	0.037	0.146	3.433
6521	chr5	154845669	154866148	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	462593	NM_001099293	285643	Hs.567824	NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding	1.463	nan	1.242	0.131	0.264	0.157	0.118	0.060	0.039	0.367	0.246	0.362	0.641	0.058	0.145	0.214	0.128	0.140	0.246	0.245	0.347	0.655	0.926	0.050	0.094	0.697	0.889	0.567	0.497	1.950	1.687	0.093	0.135	1.313	1.914	1.456	5.392	1.469	0.812	0.199	0.161	0.582	0.108	0.118	0.362	0.204	0.228	0.063	3.473
6446	chr5	131745442	131765671	+	0	NA	non-coding (NR_045116, exon 2 of 4)	non-coding (NR_045116, exon 2 of 4)	9091	NR_045116	441108	Hs.658288	NM_001013717	ENSG00000197536	C5orf56	-	chromosome 5 open reading frame 56	ncRNA	1.440	2.290	nan	0.990	1.183	0.634	0.348	1.551	0.231	0.705	0.393	1.139	2.481	0.675	0.136	0.858	1.148	2.228	4.999	1.342	1.556	1.904	0.693	2.875	2.925	0.723	1.200	3.283	4.345	1.160	0.926	1.239	1.640	1.097	1.139	0.358	0.572	1.166	0.944	2.286	2.453	0.164	0.244	0.348	1.139	0.127	1.073	1.072	0.152
7741	chr8	71847386	71864823	+	0	NA	Intergenic	Intergenic	274422	NM_001287260	389668	Hs.458938	NM_001011720	ENSG00000221947	XKR9	XRG9	XK related 9	protein-coding	1.710	0.804	0.840	1.015	0.287	0.085	1.248	0.826	0.101	0.127	0.128	0.171	0.414	0.051	0.075	0.361	0.228	0.192	0.351	1.735	1.823	2.996	0.754	1.163	1.146	1.689	2.133	0.154	0.212	1.118	0.812	0.255	0.376	4.343	5.126	0.721	1.900	1.093	0.659	0.016	0.150	1.284	0.856	1.248	0.171	0.084	0.070	0.173	0.217
6850	chr6	75992718	75998578	+	0	NA	intron (NR_040081, intron 1 of 2)	intron (NR_040081, intron 1 of 2)	918	NR_040081	100506804	Hs.743708	NR_040081		LOC100506804	-	uncharacterized LOC100506804	ncRNA	nan	nan	2.210	3.280	1.685	1.085	2.930	2.039	0.137	2.344	1.184	3.532	4.896	1.179	0.124	7.594	10.512	5.135	6.101	6.484	5.845	8.081	2.834	9.018	9.112	1.656	1.866	3.210	4.315	3.107	2.702	2.770	5.368	3.701	3.904	1.669	2.652	2.227	1.104	1.840	2.412	0.540	1.666	2.930	3.532	0.578	1.296	2.161	0.590
5046	chr20	61982641	61999642	+	0	NA	promoter-TSS (NR_110634)	promoter-TSS (NR_110634)	-199	NR_110634	100130587	Hs.640129	NR_110634	ENSG00000203900	LOC100130587	-	uncharacterized LOC100130587	ncRNA	0.692	0.922	1.214	0.082	0.823	0.435	0.513	0.091	0.094	0.056	0.066	0.592	0.729	0.274	0.072	0.612	nan	0.068	0.139	0.692	0.515	0.541	0.201	0.389	0.360	0.198	0.367	0.132	0.206	0.634	0.414	0.472	0.710	0.095	0.100	0.120	0.158	0.676	0.451	3.571	0.318	0.056	0.069	0.513	0.592	0.417	0.137	0.350	0.036
7091	chr6	162895028	162907179	+	0	NA	intron (NM_013987, intron 1 of 10)	AluSc|SINE|Alu	-247061	NM_001080378	135138	Hs.25791	NM_152410	ENSG00000112530	PACRG	GLUP|HAK005771|PARK2CRG	PARK2 coregulated	protein-coding	0.601	nan	0.656	0.152	0.190	0.083	0.201	0.061	0.066	0.065	0.040	0.086	0.204	0.026	0.084	0.483	0.448	0.179	0.301	0.296	0.367	6.444	2.069	0.111	0.091	0.153	0.208	0.365	0.365	nan	0.480	0.124	0.288	0.220	0.398	0.344	0.683	0.426	0.353	0.014	0.043	0.008	0.046	0.201	0.086	0.016	0.050	0.074	0.035
6005	chr4	117499284	117518233	+	0	NA	Intergenic	L1MCb|LINE|L1	287877	NR_031737	100302290		NR_031737	ENSG00000270394	MIR1973	hsa-mir-1973|mir-1973	microRNA 1973	ncRNA	0.577	0.661	0.515	0.153	0.132	0.101	0.080	0.083	0.051	0.042	0.066	0.076	0.173	0.029	0.086	0.243	0.142	0.126	0.229	0.101	0.154	0.079	0.068	0.143	0.098	6.418	7.294	0.229	0.237	0.599	0.227	0.126	0.220	0.060	0.029	0.311	0.940	0.149	0.197	0.009	0.047	0.020	0.055	0.080	0.076	0.005	0.054	0.073	0.221
6436	chr5	124222766	124275545	+	0	NA	Intergenic	LTR1|LTR|ERV1	-123369	NR_109882	101927421	Hs.121305	NR_109882		LOC101927421	-	uncharacterized LOC101927421	ncRNA	nan	1.194	0.762	0.193	0.688	0.264	0.320	0.474	0.113	0.461	0.268	0.261	1.149	3.588	0.215	0.268	0.292	0.733	nan	0.313	0.371	1.461	0.866	0.331	0.321	0.996	1.206	0.387	0.345	0.490	0.255	0.127	0.227	2.233	3.092	0.311	0.965	0.563	0.349	0.140	0.252	0.842	0.213	0.320	0.261	0.075	0.103	0.212	0.250
6320	chr5	71534246	71549996	+	0	NA	intron (NM_001286748, intron 4 of 11)	intron (NM_001286748, intron 4 of 11)	66666	NM_001324255	4131	Hs.335079	NM_005909	ENSG00000131711	MAP1B	FUTSCH|MAP5|PPP1R102	microtubule associated protein 1B	protein-coding	1.270	nan	1.569	0.164	0.408	0.224	0.724	2.989	0.276	0.409	0.277	0.152	0.419	0.152	0.100	0.402	0.655	0.633	0.702	0.504	0.548	nan	0.458	0.232	0.206	3.227	nan	0.364	0.336	0.892	0.536	0.237	0.331	0.520	0.644	0.695	2.420	0.755	0.507	0.563	0.209	0.108	0.050	0.724	0.152	0.284	0.341	0.100	0.478
1302	chr11	10993462	11004987	+	0	NA	Intergenic	L1PREC2|LINE|L1	119460	NR_034137	729013	Hs.726427	NR_034137	ENSG00000247271	ZBED5-AS1	-	ZBED5 antisense RNA 1	ncRNA	0.960	nan	0.743	0.137	0.426	0.243	0.937	0.079	0.098	0.308	0.155	1.338	0.676	0.056	0.105	nan	0.353	0.452	1.246	0.546	0.502	6.459	3.937	0.372	0.345	0.448	nan	0.210	0.237	0.374	0.247	0.243	0.385	0.425	0.429	0.203	0.435	1.353	nan	0.097	0.215	0.025	0.199	0.937	1.338	0.043	0.044	0.093	0.054
2239	chr13	23452514	23458939	+	0	NA	intron (NR_138043, intron 2 of 2)	MER50|LTR|ERV1	16594	NR_033774	646201	Hs.729338	NR_033774		BASP1P1	-	brain abundant, membrane attached signal protein 1 pseudogene 1	pseudo	0.544	0.732	0.520	0.123	0.077	0.050	0.019	0.164	0.025	0.098	0.105	0.093	0.193	0.067	0.062	1.359	1.061	14.525	10.833	0.342	0.314	0.072	0.084	0.194	0.071	0.170	0.245	0.281	0.265	0.469	0.186	4.011	8.600	0.046	0.040	0.174	0.253	0.632	0.622		0.070	0.015	0.123	0.019	0.093		0.047	6.839	0.067
7488	chr7	132230757	132243035	+	0	NA	intron (NM_181775, intron 2 of 4)	intron (NM_181775, intron 2 of 4)	24427	NM_020911	91584	Hs.511454	NM_020911	ENSG00000221866	PLXNA4	FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003	plexin A4	protein-coding	nan	nan	nan	0.128	0.148	0.079	0.136	0.098	0.131	0.141	0.090	0.059	0.214	0.071	0.130	0.309	0.192	0.091	0.212	0.281	0.457	nan	0.030	0.123	0.158	0.352	nan	0.258	0.337	nan	0.227	0.182	0.194	0.065	0.080	0.325	0.957	3.359	nan	0.095	0.117		0.033	0.136	0.059	0.072	0.083	0.024	0.105
3341	chr17	27409766	27420353	+	0	NA	intron (NM_001346768, intron 37 of 40)	MIR|SINE|MIR	-12432	NM_004740	9220	Hs.462590	NM_004740	ENSG00000221995	TIAF1	MAJN|SPR210	TGFB1-induced anti-apoptotic factor 1	protein-coding	nan	nan	nan	0.965	0.958	0.379	2.189	0.141	0.045	2.112	1.164	2.015	1.663	0.092	0.105	1.419	2.740	0.319	0.457	1.883	2.106	3.985	1.615	0.461	0.520	0.976	1.313	5.550	5.878	2.192	1.458	1.646	3.041	1.384	1.627	0.788	nan	4.285	1.959	1.197	1.219	0.826	0.218	2.189	2.015	0.448	2.685	3.064	1.705
3029	chr16	2562708	2571363	+	0	NA	intron (NM_001694, intron 1 of 2)	intron (NM_001694, intron 1 of 2)	3164	NM_001694	527	Hs.389107	NM_001694	ENSG00000185883	ATP6V0C	ATP6C|ATP6L|ATPL|VATL|VPPC|Vma3	ATPase H+ transporting V0 subunit c	protein-coding	3.374	nan	3.034	3.159	2.488	1.233	2.264	1.503	0.186	1.381	0.435	2.021	4.672	1.803	0.083	3.320	3.459	2.304	3.725	3.874	4.149	nan	3.728	7.789	7.440	1.570	nan	3.151	5.075	3.724	3.191	1.958	2.863	2.920	3.437	2.929	2.218	2.139	1.105	2.014	5.358	0.618	1.210	2.264	2.021	0.621	1.340	0.411	0.638
8145	chr9	66570781	66589095	+	0	NA	Intergenic	AluSx1|SINE|Alu	-26027	NR_122077	403323	Hs.646340	NM_203449		LOC403323	-	uncharacterized LOC403323	ncRNA	0.715	1.479	1.744	0.225	0.345	0.182	1.728	0.098	0.097	0.153	0.149	0.134	0.712	0.101	0.100	0.358	0.250	0.658	1.271	0.488	0.626	1.865	0.522	0.534	0.497	3.822	4.529	0.269	0.269	0.500	0.261	0.295	0.496	0.896	1.685	0.255	0.408	1.474	1.255	0.055	0.067	0.161	0.077	1.728	0.134	0.100	0.357	0.086	0.109
3587	chr17	76833574	76838513	+	0	NA	intron (NM_001321291, intron 1 of 20)	intron (NM_001321291, intron 1 of 20)	566	NM_001321291	57602	Hs.464243	NM_025090	ENSG00000055483	USP36	DUB1	ubiquitin specific peptidase 36	protein-coding	5.770	4.687	4.307	5.798	4.942	2.777	5.855	3.422	0.442	3.511	1.289	4.337	7.595	2.668	0.131	7.452	6.994	4.853	7.604	8.755	7.026	8.372	5.079	12.599	12.499	nan	5.175	7.298	10.693	8.784	10.871	2.861	5.308	6.327	6.603	5.394	4.719	nan	2.569	2.115	4.374	0.870	2.776	5.855	4.337	1.289	6.231	1.232	1.627
4255	chr2	24297900	24308590	+	0	NA	intron (NM_147184, intron 4 of 5)	AluSx|SINE|Alu	3501	NR_111929	375190	Hs.710370	NM_198553	ENSG00000219626	FAM228B	-	family with sequence similarity 228 member B	protein-coding	2.417	1.470	2.324	2.172	1.480	0.694	1.172	1.370	0.219	1.163	0.567	2.306	5.005	3.729	0.161	2.728	2.969	3.270	4.505	5.124	4.192	5.529	1.935	11.490	12.551	1.299	1.990	8.524	8.157	2.920	3.150	1.687	2.699	0.709	0.572	2.045	2.944	2.336	1.256	4.666	1.531	0.067	0.743	1.172	2.306	0.610	1.654	0.862	0.927
1879	chr12	27021286	27038558	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-43791	NM_002223	3709	Hs.512235	NM_002223	ENSG00000123104	ITPR2	ANHD|CFAP48|INSP3R2|IP3R2	inositol 1,4,5-trisphosphate receptor type 2	protein-coding	nan	nan	nan	0.403	0.533	0.223	0.171	0.199	0.056	0.434	0.240	0.436	1.055	0.050	0.112	0.232	0.296	0.213	0.417	2.655	2.359	1.531	0.402	0.577	0.544	0.294	0.507	1.278	1.113	1.153	1.063	0.339	0.510	0.396	0.223	0.421	0.899	1.602	0.908	4.104	1.157	0.123	0.128	0.171	0.436	0.369	0.552	0.501	0.307
2917	chr15	66979968	67001109	+	0	NA	Intergenic	L2a|LINE|L2	-4136	NM_005585	4091	Hs.153863	NM_005585	ENSG00000137834	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding	1.344	1.064	nan	0.341	0.651	0.341	1.138	0.928	0.258	0.266	0.123	1.345	2.122	1.205	0.093	0.329	0.293	3.645	6.446	0.927	0.917	nan	0.109	0.228	0.300	0.951	1.505	0.368	0.603	2.275	2.259	0.301	0.519	1.257	1.024	1.069	1.623	0.586	0.474	0.355	0.358	0.519	1.204	1.138	1.345	0.592	0.386	0.233	0.695
2342	chr13	72425118	72454466	+	0	NA	intron (NM_080760, intron 2 of 8)	CpG	1538	NM_080759	1602	Hs.129452	NM_004392	ENSG00000276644	DACH1	DACH	dachshund family transcription factor 1	protein-coding	nan	1.135	1.405	0.370	2.034	1.114	3.677	0.063	0.049	0.321	0.212	0.375	2.999	0.122	0.078	0.900	1.296	0.458	0.826	4.728	4.470	nan	0.733	0.179	0.221	1.224	1.480	0.561	0.627	nan	7.642	0.314	0.548	3.120	2.508	3.824	nan	0.566	0.261	0.136	0.167	0.896	7.000	3.677	0.375	1.012	0.654	0.114	1.610
3516	chr17	69442987	69470881	+	0	NA	Intergenic	Intergenic	-258614	NR_104152	101928165	Hs.407613	NR_104152	ENSG00000260785	CASC17	LINC00600	cancer susceptibility candidate 17 (non-protein coding)	ncRNA	0.838	nan	0.573	0.141	8.619	4.157	0.426	0.242	0.110	0.314	0.240	0.698	0.679	0.032	0.112	0.508	0.324	0.489	1.155	0.477	0.562	3.313	1.078	0.243	0.239	0.520	nan	0.592	0.547	0.497	0.196	0.231	0.342	0.543	0.869	0.135	0.231	1.024	0.579	0.035	0.251	0.090	0.076	0.426	0.698	0.045	0.045	0.119	0.040
832	chr1	208040483	208048852	+	0	NA	Intergenic	AluJb|SINE|Alu	40016	NM_001025109	947	Hs.374990	NM_001773	ENSG00000174059	CD34	-	CD34 molecule	protein-coding	1.853	3.088	1.484	0.353	1.626	0.771	0.872	0.662	0.211	0.548	0.343	1.040	1.698	1.193	0.102	9.177	12.160	3.854	3.798	2.552	2.534	0.971	0.514	nan	nan	1.480	2.068	1.064	1.571	0.828	0.627	3.467	5.574	0.175	0.121	0.879	1.072	0.651	0.584	0.587	0.302	0.068	0.275	0.872	1.040	0.151	0.585	3.668	0.266
2135	chr12	109229907	109235052	+	0	NA	intron (NM_001161330, intron 2 of 13)	intron (NM_001161330, intron 2 of 13)	-1697	NR_030350	693204		NR_030350	ENSG00000207622	MIR619	MIRN619|hsa-mir-619	microRNA 619	ncRNA	1.505	2.487	nan	2.540	0.434	0.062	0.472	6.609	0.437	1.279	0.470	0.178	1.645	0.252	0.115	0.430	0.530	0.682	1.296	0.578	0.687	8.884	6.417	0.492	0.454	0.939	1.589	4.292	5.037	1.682	1.078	0.168	0.410	2.730	6.856	0.743	1.292	4.026	1.753	0.390	0.176	0.460	0.046	0.472	0.178	0.305	6.030	0.038	0.354
828	chr1	207175737	207185996	+	0	NA	Intergenic	Intergenic	25235	NM_023938	79098	Hs.32417	NM_023938	ENSG00000182795	C1orf116	SARG	chromosome 1 open reading frame 116	protein-coding	0.829	1.093	1.311	0.384	0.371	0.187	0.274	0.255	0.172	0.122	0.072	0.093	0.468	0.084	0.147	0.398	0.304	4.905	15.162	0.525	0.752	0.322	0.182	nan	nan	0.286	0.454	1.009	0.733	0.383	0.183	0.069	0.154	0.112	0.123	0.163	0.242	0.876	0.704	0.112	0.160	0.009	0.070	0.274	0.093	0.047	0.030	0.038	0.109
1831	chr12	11896486	11912080	+	0	NA	intron (NM_001987, intron 1 of 7)	intron (NM_001987, intron 1 of 7)	101495	NM_001987	2120	Hs.504765	NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant 6	protein-coding	0.825	1.044	1.489	2.373	0.438	0.196	0.256	0.172	0.031	0.660	0.375	0.817	1.661	0.067	0.112	0.251	0.210	0.548	1.451	nan	1.168	4.642	1.671	0.477	0.484	0.430	0.543	2.120	2.188	0.353	0.198	0.264	0.339	0.234	0.344	0.391	0.614	1.264	0.658	1.020	0.405	0.037	0.035	0.256	0.817	0.012	0.078	0.062	0.158
3949	chr19	5621622	5628777	+	0	NA	intron (NM_002967, intron 1 of 20)	intron (NM_002967, intron 1 of 20)	2153	NM_001201338	6294	Hs.728802	NM_002967	ENSG00000160633	SAFB	HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	3.388	2.213	3.233	3.326	4.181	2.520	2.970	1.698	0.113	1.490	0.871	4.540	6.896	2.663	0.130	3.312	3.380	4.527	6.352	5.537	5.889	3.409	1.614	9.067	9.152	3.982	4.875	5.730	nan	9.686	8.283	1.863	4.048	2.954	4.637	4.101	4.525	2.988	1.666	2.905	2.264	0.825	1.884	2.970	4.540	1.379	1.979	0.946	1.325
6590	chr6	4014467	4024513	+	0	NA	Intergenic	Intergenic	-2079	NM_003913	8899	Hs.159014	NM_003913	ENSG00000112739	PRPF4B	PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1	pre-mRNA processing factor 4B	protein-coding	6.034	3.194	5.189	5.106	4.243	2.504	4.210	2.882	0.472	1.930	1.015	5.561	2.852	4.288	0.184	5.676	5.102	6.109	8.955	7.838	6.868	5.756	2.908	11.209	11.608	4.370	5.238	4.582	7.672	6.790	7.465	2.464	4.981	4.505	4.574	6.765	10.407	2.687	1.356	1.835	2.709	0.835	2.813	4.210	5.561	1.042	2.454	1.861	4.075
6247	chr5	43306097	43315380	+	0	NA	intron (NM_001324220, intron 1 of 10)	MER66B|LTR|ERV1	2588	NM_001324219	3157	Hs.397729	NM_002130	ENSG00000112972	HMGCS1	HMGCS	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein-coding	1.684	2.447	3.025	4.320	2.502	1.122	2.961	3.769	0.522	1.597	1.319	3.897	4.693	0.672	0.133	1.545	1.932	1.896	3.013	4.896	3.910	3.466	3.730	3.311	3.479	4.469	4.508	2.433	3.164	3.709	2.384	2.350	5.610	2.095	1.578	1.551	2.393	2.431	1.378	1.990	4.060	0.696	0.665	2.961	3.897	0.762	1.227	2.403	0.866
8093	chr9	23817928	23832142	+	0	NA	intron (NM_004432, intron 1 of 6)	intron (NM_004432, intron 1 of 6)	1028	NM_004432	1993	Hs.166109	NM_004432	ENSG00000107105	ELAVL2	HEL-N1|HELN1|HUB	ELAV like RNA binding protein 2	protein-coding	1.990	nan	nan	0.080	0.872	0.429	0.683	0.107	0.102	1.290	0.827	0.236	3.133	0.091	0.052	1.546	1.669	0.864	1.281	2.807	2.059	0.377	0.159	0.040	0.031	4.357	5.270	1.085	1.315	3.691	5.753	0.683	1.225	6.147	4.967	2.001	2.300	4.169	2.783	0.591	1.531	1.402	0.011	0.683	0.236	0.075	2.175	0.334	0.399
4614	chr2	177383243	177403656	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	72331	NR_031648	100302142		NR_031648	ENSG00000283203	MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA	0.889	1.306	0.876	0.255	0.354	0.188	0.240	0.050	0.016	0.092	0.159	0.581	2.023	0.016	0.100	0.336	0.268	0.171	0.291	0.492	0.531	0.916	0.241	0.204	0.225	0.250	0.410	1.000	0.887	0.369	0.161	0.168	0.279	0.290	0.448	0.408	0.904	0.713	0.502	3.703	0.313	0.047	0.066	0.240	0.581	0.047	0.328	0.069	0.121
5519	chr3	126177451	126194919	+	0	NA	intron (NM_001040653, intron 4 of 5)	MIRb|SINE|MIR	8577	NR_104249	79364	Hs.440049	NM_025112	ENSG00000070476	ZXDC	ZXDL	ZXD family zinc finger C	protein-coding	1.858	nan	5.184	1.234	1.058	0.685	1.012	0.862	0.157	0.853	0.384	1.441	1.257	0.426	0.073	0.814	0.935	1.009	1.694	3.147	3.323	2.376	1.097	1.655	1.516	0.895	nan	1.167	1.843	3.888	4.655	0.884	1.879	0.399	0.440	1.081	1.010	1.049	0.567	0.417	0.753	0.104	1.829	1.012	1.441	1.010	0.238	0.210	0.278
1404	chr11	45790853	45797637	+	0	NA	TTS (NR_027134)	TTS (NR_027134)	1262	NR_027134	374387	Hs.632142	NM_199137	ENSG00000205106	DKFZp779M0652	-	uncharacterized DKFZp779M0652	ncRNA	nan	1.294	0.638	0.233	0.505	0.213	0.208	0.088	0.166	0.115	0.168	0.113	1.193	0.191	0.105	1.330	1.239	9.483	5.054	1.185	1.263	0.930	0.217	0.286	0.492	0.411	0.667	0.342	0.441	1.067	0.553	0.457	0.882	0.255	0.363	0.214	nan	0.726	0.715	0.140	0.182		0.093	0.208	0.113	0.399	0.165	0.335	0.111
1543	chr11	78166495	78188647	+	0	NA	intron (NM_024678, intron 10 of 13)	AluSx3|SINE|Alu	-36689	NR_120564	101928865	Hs.407574	NR_120564	ENSG00000251323	LOC101928865	-	uncharacterized LOC101928865	ncRNA	nan	0.722	0.931	0.912	0.386	0.195	0.208	0.113	0.107	0.742	0.325	0.486	0.297	0.130	0.102	1.759	1.972	0.511	0.433	0.597	0.770	4.663	1.906	1.385	1.181	0.523	0.706	1.111	1.295	0.442	0.218	0.325	0.817	1.093	1.069	0.254	0.783	1.091	0.756	0.073	0.107	0.179	0.418	0.208	0.486	0.097	0.110	0.201	0.131
8366	chrX	10570606	10605955	+	0	NA	intron (NM_033290, intron 1 of 9)	CpG	394	NM_033289	4281	Hs.27695	NM_000381	ENSG00000101871	MID1	BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY	midline 1	protein-coding	0.825	nan	1.087	0.541	0.238	0.129	0.367	1.332	0.159	0.262	0.222	0.166	0.683	2.688	0.091	0.380	0.290	2.213	4.968	0.548	0.508	1.244	0.612	0.809	0.764	0.167	0.295	1.097	2.020	0.643	0.376	1.296	1.276	0.116	0.240	0.424	0.784	0.478	0.499	0.027	0.154	0.027	0.124	0.367	0.166	0.091	0.181	0.545	0.188
424	chr1	101774945	101791423	+	0	NA	Intergenic	Charlie23a|DNA|hAT-Charlie	-6209	NR_126402	104355286	Hs.568671	NR_126402	ENSG00000231671	LINC01307	-	long intergenic non-protein coding RNA 1307	ncRNA	0.796	nan	nan	0.193	0.424	0.194	2.868	0.104	0.088	0.193	0.141	0.313	2.367	0.092	0.160	0.377	0.251	0.210	0.305	1.224	nan	1.882	0.921	0.228	0.218	0.606	0.925	nan	nan	0.480	0.254	0.173	0.346	1.753	1.074	0.171	nan	1.397	0.971	0.041	0.081	0.394	0.077	2.868	0.313	0.041	0.031	0.048	0.038
6786	chr6	45342345	45346581	+	0	NA	intron (NM_003599, intron 1 of 10)	L3|LINE|CR1	1325	NM_181356	8464	Hs.368325	NM_003599	ENSG00000196284	SUPT3H	SPT3|SPT3L	SPT3 homolog, SAGA and STAGA complex component	protein-coding	5.118	2.429	2.669	4.023	3.813	1.632	3.652	4.130	0.152	1.518	0.714	3.230	6.819	3.866	0.150	4.560	5.926	12.554	14.766	4.751	3.844	2.195	0.678	13.501	14.609	3.240	4.335	10.734	nan	7.899	8.587	2.919	6.324	3.124	1.468	8.636	9.083	3.686	1.922	4.051	2.336	0.158	2.093	3.652	3.230	1.204	2.701	3.519	3.905
7500	chr7	137412976	137452640	+	0	NA	intron (NM_001321708, intron 1 of 32)	MIRc|SINE|MIR	98270	NM_001321709	9162	Hs.242947	NM_004717	ENSG00000157680	DGKI	DGK-IOTA	diacylglycerol kinase iota	protein-coding	nan	nan	nan	0.080	0.953	0.461	0.544	0.147	0.101	0.165	0.167	0.062	0.633	0.044	0.152	1.496	2.497	1.335	1.448	0.391	0.464	nan	1.125	10.659	11.086	0.131	nan	0.182	0.177	nan	0.327	2.204	4.351	0.108	0.110	0.489	1.036	0.930	nan	0.252	0.234	0.029	0.038	0.544	0.062	0.032	0.032	4.550	0.221
1402	chr11	45675561	45687029	+	0	NA	intron (NM_003654, intron 1 of 3)	intron (NM_003654, intron 1 of 3)	5911	NM_003654	8534	Hs.104576	NM_003654	ENSG00000175264	CHST1	C6ST|GST-1|KS6ST|KSGal6ST|KSST	carbohydrate sulfotransferase 1	protein-coding	nan	3.465	0.611	0.618	0.552	0.260	1.093	0.058	0.057	0.136	0.187	0.093	2.434	0.144	0.091	0.710	0.803	1.314	1.730	1.285	1.159	1.792	0.434	0.104	0.218	0.477	0.942	1.672	1.541	4.176	4.156	0.387	0.790	0.388	0.459	0.551	nan	1.005	0.596	0.777	0.587	0.082	0.182	1.093	0.093	2.354	0.257	0.078	0.206
6333	chr5	73673967	73742893	+	0	NA	intron (NR_126354, intron 2 of 2)	intron (NR_126354, intron 2 of 2)	90119	NR_105010	101929082	Hs.434316	NR_105010	ENSG00000249343	LINC01333	-	long intergenic non-protein coding RNA 1333	ncRNA	0.985	nan	1.602	0.137	0.333	0.156	0.236	0.404	0.109	0.143	0.088	0.216	0.437	7.222	0.228	0.311	0.332	0.742	1.812	0.518	0.559	nan	0.269	0.163	0.188	1.107	nan	0.618	0.649	0.693	0.447	0.116	0.212	0.905	0.938	0.677	2.274	0.616	0.443	0.443	0.345	0.242	0.066	0.236	0.216	0.133	0.230	0.042	0.676
2402	chr13	100880260	100888670	+	0	NA	intron (NM_001127692, intron 6 of 22)	L2a|LINE|L2	143196	NM_001127692	5095	Hs.80741	NM_000282	ENSG00000175198	PCCA	-	propionyl-CoA carboxylase alpha subunit	protein-coding	0.940	1.810	1.169	1.089	0.351	0.164	1.110	0.361	0.095	0.451	0.441	0.207	0.933	0.127	0.060	0.725	0.431	0.285	0.313	0.753	0.901	2.081	0.465	0.186	0.177	0.571	nan	0.541	0.514	0.723	0.615	0.180	0.297	7.008	9.187	0.491	nan	0.631	0.299	0.207	0.442	1.969	0.373	1.110	0.207	0.206	0.278	0.070	0.134
1841	chr12	12711380	12716835	+	0	NA	intron (NM_030640, intron 1 of 6)	intron (NM_030640, intron 1 of 6)	1341	NM_030640	80824	Hs.536535	NM_030640	ENSG00000111266	DUSP16	MKP-7|MKP7	dual specificity phosphatase 16	protein-coding	6.198	4.247	5.363	5.537	9.281	4.950	3.444	1.584	0.238	6.489	2.291	6.481	10.462	4.564	0.137	1.783	2.028	6.867	10.414	nan	6.128	8.411	6.914	12.746	13.616	6.379	8.215	6.343	12.895	1.718	1.379	2.474	4.415	6.327	6.253	3.161	3.086	3.923	2.174	2.373	5.074	1.045	2.446	3.444	6.481	0.413	1.711	1.200	0.736
7771	chr8	82541034	82548560	+	0	NA	Intergenic	Intergenic	53792	NM_005536	3612	Hs.656694	NM_005536	ENSG00000133731	IMPA1	IMP|IMPA	inositol monophosphatase 1	protein-coding	1.935	nan	nan	1.062	0.467	0.213	0.118	0.141	0.107	0.084	0.088	0.250	0.384	0.014	0.056	0.379	0.448	0.222	0.501	0.454	0.466	7.891	1.322	0.768	0.578	0.375	0.547	nan	4.018	1.301	1.092	0.389	0.414	6.019	7.521	0.380	0.816	1.138	0.738	0.014	0.059	0.684	0.506	0.118	0.250	0.330	0.720	0.182	0.097
347	chr1	65632512	65645323	+	0	NA	intron (NM_001330616, intron 1 of 4)	intron (NM_001330616, intron 1 of 4)	24231	NM_001330616	205	Hs.10862	NM_013410	ENSG00000162433	AK4	AK 4|AK3|AK3L1|AK3L2	adenylate kinase 4	protein-coding	1.942	0.935	nan	0.240	0.338	0.180	0.201	0.265	0.173	0.147	0.179	0.257	0.440	0.101	0.099	0.442	0.496	0.736	2.587	0.658	0.788	0.595	0.207	0.590	0.590	nan	nan	0.799	nan	1.060	0.997	0.349	0.614	0.086	0.091	1.058	3.636	0.699	0.621	0.022	0.072	0.015	1.458	0.201	0.257	0.461	0.087	0.122	0.907
434	chr1	107861221	107892457	+	0	NA	intron (NM_001330665, intron 3 of 6)	intron (NM_001330665, intron 3 of 6)	186148	NM_001113228	22854	Hs.133046	NM_014917	ENSG00000162631	NTNG1	Lmnt1	netrin G1	protein-coding	1.388	nan	nan	0.151	0.287	0.189	0.325	0.141	0.114	0.095	0.047	0.046	0.400	0.031	0.117	0.306	0.199	0.269	0.312	0.332	nan	0.633	0.245	0.254	0.233	5.858	6.104	nan	nan	0.615	0.367	0.132	0.216	0.144	0.123	0.624	nan	0.353	0.368	0.108	0.075	0.034	0.064	0.325	0.046	0.174	0.029	0.035	0.403
865	chr1	215738977	215744423	+	0	NA	intron (NM_016121, intron 1 of 17)	intron (NM_016121, intron 1 of 17)	978	NM_016121	51133	Hs.335139	NM_016121	ENSG00000136636	KCTD3	NY-REN-45	potassium channel tetramerization domain containing 3	protein-coding	7.151	4.866	6.428	7.655	4.681	2.301	3.511	3.016	0.414	4.262	2.715	4.822	nan	2.713	0.139	4.612	6.185	6.397	9.580	9.989	9.153	nan	2.799	12.814	12.792	4.250	nan	5.119	8.128	11.575	14.217	1.512	3.999	6.366	4.847	12.022	11.395	3.702	1.967	1.049	1.964	1.468	5.495	3.511	4.822	1.409	3.041	1.546	3.768
5982	chr4	105508538	105517692	+	0	NA	intron (NR_125926, intron 1 of 9)	intron (NR_125926, intron 1 of 9)	-97057	NM_025212	80319	Hs.12248	NM_025212	ENSG00000168772	CXXC4	IDAX	CXXC finger protein 4	protein-coding	1.306	nan	nan	3.964	9.238	4.443	0.432	0.090	0.036	2.444	1.495	4.277	10.309	0.155	0.089	0.338	0.281	0.193	nan	3.420	2.889	2.790	1.385	0.140	0.120	0.738	nan	3.414	5.052	0.704	0.459	0.112	0.203	5.748	4.624	1.914	nan	3.138	1.756	0.008	1.229	1.441	0.226	0.432	4.277	0.010	0.578	0.048	0.973
6651	chr6	20558098	20771305	+	0	NA	intron (NM_017774, intron 5 of 15)	intron (NM_017774, intron 5 of 15)	130013	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding	1.620	1.534	nan	0.900	3.481	1.813	0.419	0.286	0.121	0.652	0.507	2.150	nan	0.080	0.104	0.718	0.445	4.628	nan	0.813	1.059	nan	0.753	2.553	2.641	4.844	5.275	1.823	1.654	3.717	3.328	0.321	0.561	2.392	3.455	1.806	4.553	0.612	0.455	3.424	1.306	0.818	0.580	0.419	2.150	0.276	0.091	0.166	2.150
3165	chr16	70556325	70560216	+	0	NA	promoter-TSS (NM_001195139)	promoter-TSS (NM_001195139)	579	NM_012426	23450	Hs.514435	NM_012426	ENSG00000189091	SF3B3	RSE1|SAP130|SF3b130|STAF130	splicing factor 3b subunit 3	protein-coding	8.909	4.329	6.091	9.444	6.952	3.958	7.007	4.830	0.330	2.380	1.230	4.408	7.440	3.639	0.246	10.415	7.538	8.616	12.387	10.963	11.434	9.886	7.496	20.876	22.510	5.101	6.920	9.278	17.119	18.147	16.178	6.847	8.671	6.498	8.231	11.240	8.925	6.062	3.588	3.984	2.447	0.999	2.671	7.007	4.408	2.959	4.912	1.686	2.497
5557	chr3	134576815	134601284	+	0	NA	intron (NM_004441, intron 1 of 15)	intron (NM_004441, intron 1 of 15)	74950	NM_004441	2047	Hs.116092	NM_004441	ENSG00000154928	EPHB1	ELK|EPHT2|Hek6|NET	EPH receptor B1	protein-coding	1.066	nan	nan	0.951	0.477	0.204	0.193	0.147	0.086	0.173	0.146	0.145	0.609	0.044	0.087	0.278	0.150	0.222	0.292	0.549	0.625	4.693	1.512	0.226	0.229	0.527	0.919	1.252	0.969	nan	0.394	0.149	0.277	0.367	0.434	0.175	0.278	0.248	0.328	0.186	0.174	0.043	0.055	0.193	0.145	0.205	0.050	0.044	0.076
8127	chr9	37114612	37122437	+	0	NA	Intergenic	AluSp|SINE|Alu	-1945	NM_032226	84186	Hs.654700	NM_032226	ENSG00000147905	ZCCHC7	AIR1|HSPC086	zinc finger CCHC-type containing 7	protein-coding	1.796	nan	3.772	3.099	1.406	0.687	0.995	0.808	0.103	0.944	0.530	2.051	3.504	0.772	0.121	2.036	2.160	1.415	2.288	3.321	2.862	4.180	1.848	4.054	4.251	2.534	3.537	7.908	11.062	2.359	2.610	1.636	2.903	2.717	2.706	2.004	1.878	4.731	2.407	1.411	1.263	0.485	0.638	0.995	2.051	0.307	1.076	1.151	0.490
4216	chr2	11675686	11685360	+	0	NA	TTS (NR_039627)	TTS (NR_039627)	280	NR_039627	100616469		NR_039627	ENSG00000264010	MIR4429	mir-4429	microRNA 4429	ncRNA	0.842	1.176	2.064	3.526	0.677	0.314	0.423	0.083	0.099	1.800	0.774	3.873	4.327	0.124	0.092	0.549	0.747	0.248	0.280	4.735	4.914	5.280	1.590	0.227	0.171	0.170	0.323	10.757	nan	0.381	0.387	0.287	0.405	2.602	2.229	0.408	nan	3.522	1.866	3.090	1.521	0.729	0.403	0.423	3.873	0.093	0.609	0.051	0.165
4134	chr19	49989991	49993930	+	0	NA	intron (NM_012423, intron 1 of 7)	AluSx1|SINE|Alu	1095	NR_026712	728658	Hs.645344	NR_026712	ENSG00000236552	RPL13AP5	RPL13A_8_1086|bA196N24.2	ribosomal protein L13a pseudogene 5	pseudo	6.568	3.210	4.710	3.743	8.405	4.548	3.859	2.269	0.285	2.580	1.754	5.436	7.053	7.232	0.328	7.035	6.928	8.243	10.418	7.789	8.488	14.133	7.080	18.507	18.764	5.892	9.405	10.187	10.813	14.559	16.635	4.858	9.392	5.060	7.347	20.902	12.401	5.047	3.237	2.630	3.779	0.534	1.912	3.859	5.436	1.304	2.196	2.212	4.216
4654	chr2	193234098	193248475	+	0	NA	Intergenic	Intergenic	-181627	NM_001305145	23671	Hs.144513	NM_016192	ENSG00000144339	TMEFF2	CT120.2|HPP1|TENB2|TPEF|TR|TR-2	transmembrane protein with EGF like and two follistatin like domains 2	protein-coding	0.794	nan	0.844	0.104	0.235	0.123	0.138	0.069	0.068	0.138	0.125	0.037	0.338	0.030	0.084	0.370	0.205	4.352	6.892	0.182	0.236	0.281	0.182	0.421	0.351	0.523	0.724	0.329	0.357	0.452	0.140	0.128	0.229	0.240	0.168	0.412	1.011	0.175	0.286	0.035	0.037	0.086	0.033	0.138	0.037	0.007	0.092	0.042	0.100
5920	chr4	62064724	62081311	+	0	NA	intron (NM_015236, intron 1 of 24)	L1PA7|LINE|L1	6043	NM_015236	23284	Hs.28391	NM_015236	ENSG00000150471	ADGRL3	CIRL3|CL3|LEC3|LPHN3	adhesion G protein-coupled receptor L3	protein-coding	nan	nan	1.027	0.781	0.438	0.145	0.643	0.077	0.106	1.105	0.645	0.498	5.273	0.051	0.055	0.916	1.303	1.849	2.744	1.740	1.415	7.482	2.489	8.005	8.504	2.375	3.052	0.500	0.576	0.983	1.383	0.206	0.534	2.085	2.398	0.127	0.307	0.820	0.545	0.034	1.006	0.545	1.543	0.643	0.498	0.024	1.411	0.054	0.023
7298	chr7	57697300	57701845	+	0	NA	Intergenic	L2b|LINE|L2	189689	NM_001159279	441234	Hs.533121	NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding	nan	0.986	1.231	0.181	0.549	0.463	0.141	0.165	0.324	0.136	0.183	0.106	0.582	0.163	0.271	2.489	5.459	8.705	1.851	0.349	0.421	0.208	0.135	0.449	0.565	0.334	0.447	0.104	0.219	0.559	0.172	0.595	0.846	0.036	0.132	0.236	0.280	0.363	0.504	0.036	0.136	0.084	0.159	0.141	0.106	0.022	0.056	0.152	0.080
3929	chr19	1247693	1271885	+	0	NA	TTS (NM_177401)	TTS (NM_177401)	-9476	NM_001300829	1153	Hs.618145	NM_001280	ENSG00000099622	CIRBP	CIRP	cold inducible RNA binding protein	protein-coding	3.434	2.798	4.242	2.868	4.513	2.385	3.891	2.028	0.306	1.792	0.885	3.800	7.238	5.018	0.119	3.055	4.316	3.119	4.932	5.611	4.847	2.689	1.594	5.306	5.202	2.117	3.277	2.768	nan	3.506	3.197	1.779	3.146	3.714	3.235	2.262	2.349	2.620	1.434	3.577	3.792	1.118	1.486	3.891	3.800	1.000	3.185	2.200	0.744
3129	chr16	46776587	46807215	+	0	NA	intron (NM_001308301, intron 1 of 11)	intron (NM_001308301, intron 1 of 11)	5257	NM_001308301	91807	Hs.130465	NM_182493	ENSG00000140795	MYLK3	MLCK|MLCK2|caMLCK	myosin light chain kinase 3	protein-coding	0.998	1.091	0.666	1.208	0.360	0.266	0.284	0.125	0.058	0.101	0.101	0.552	0.781	0.105	0.070	0.392	0.439	0.165	0.221	0.487	0.537	1.188	0.247	0.417	0.404	0.194	0.306	3.271	3.735	0.442	0.258	0.174	0.186	0.386	0.465	0.319	0.686	0.829	0.532	1.640	0.309	0.087	0.135	0.284	0.552	0.126	0.797	0.039	0.141
689	chr1	180308382	180345047	+	0	NA	intron (NM_032360, intron 6 of 7)	intron (NM_032360, intron 6 of 7)	80811	NR_036067	100423032		NR_036067	ENSG00000265435	MIR3121	mir-3121	microRNA 3121	ncRNA	nan	nan	1.678	0.421	0.657	0.320	0.314	0.366	0.188	0.338	0.333	0.689	0.673	0.102	0.149	0.541	0.416	0.830	0.615	0.707	nan	0.803	0.258	nan	0.380	1.354	1.732	0.890	0.757	0.805	0.532	0.395	0.521	0.490	0.347	2.533	nan	0.967	0.553	0.069	0.240	0.060	0.143	0.314	0.689	0.029	0.072	0.104	3.294
3462	chr17	55036846	55061227	+	0	NA	Intergenic	AluSc5|SINE|Alu	-6432	NM_021626	59342	Hs.514950	NM_021626	ENSG00000121064	SCPEP1	HSCP1|RISC	serine carboxypeptidase 1	protein-coding	1.583	1.725	1.668	2.101	2.835	1.464	0.796	0.460	0.211	0.432	0.290	1.008	6.575	0.419	0.133	1.461	1.234	0.881	1.353	2.048	2.001	2.533	0.770	nan	2.056	0.881	1.232	nan	nan	2.073	1.823	1.025	1.613	0.961	1.132	1.281	1.508	3.555	1.450	2.741	2.302	0.117	0.309	0.796	1.008	0.224	0.337	0.725	0.344
5994	chr4	113968756	114016862	+	0	NA	intron (NM_001148, intron 1 of 45)	intron (NM_001148, intron 1 of 45)	22024	NM_001148	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding	1.288	1.219	0.747	2.701	0.819	0.400	0.316	0.111	0.073	0.153	0.145	4.620	0.256	0.032	0.075	0.242	0.215	0.328	0.491	0.765	0.649	1.832	0.896	0.130	0.141	0.816	1.117	1.654	1.623	0.854	0.742	0.154	0.254	1.910	2.454	0.660	1.954	0.775	0.444	0.102	0.612	0.405	0.163	0.316	4.620	0.149	0.112	0.055	0.443
1116	chr10	50962565	50971257	+	0	NA	intron (NM_001347826, intron 1 of 20)	intron (NM_001347826, intron 1 of 20)	3134	NM_001347819	55753	Hs.17860	NM_018245	ENSG00000197444	OGDHL	-	oxoglutarate dehydrogenase-like	protein-coding	0.765	nan	0.524	0.610	0.736	0.387	0.368	0.091	0.037	0.432	0.258	0.660	2.030	0.108	0.061	6.886	8.774	4.050	2.007	1.189	1.237	2.547	0.786	2.298	2.353	0.453	0.912	0.601	0.903	0.764	0.817	1.161	1.650	0.713	0.550	0.414	0.676	1.034	0.678	0.685	0.186	0.098	0.282	0.368	0.660	0.077	0.653	0.579	0.197
4413	chr2	84175837	84184782	+	0	NA	Intergenic	MIRc|SINE|MIR	-337497	NR_003663	388965	Hs.664098	NM_001013648		FUNDC2P2	-	FUN14 domain containing 2 pseudogene 2	pseudo	nan	0.491	nan	0.207	0.169	0.144	0.151	0.059	0.090	0.075	0.092	0.094	0.295	0.081	0.149	0.542	0.486	5.834	3.094	0.305	0.328	0.172	0.084	0.198	0.130	0.241	0.378	0.212	0.227	0.378	0.180	0.088	0.132	0.033	0.023	0.138	0.317	0.348	0.364	0.050	0.080			0.151	0.094	0.011	0.011	0.046	0.041
5231	chr22	28789359	28816736	+	0	NA	intron (NM_001145418, intron 2 of 22)	intron (NM_001145418, intron 2 of 22)	-52810	NR_106713	102466081		NR_106713	ENSG00000276162	MIR5739	hsa-mir-5739	microRNA 5739	ncRNA	nan	0.665	0.828	0.106	0.312	0.140	0.167	0.347	0.114	0.057	0.051	0.118	0.208	0.099	0.118	0.331	0.241	0.168	nan	0.235	0.340	0.290	0.100	0.280	0.333	3.934	nan	0.190	0.258	1.082	0.844	0.139	0.152	0.272	0.261	0.433	nan	0.880	0.781	0.022	0.065	0.080	0.113	0.167	0.118	0.176	0.089	0.036	0.154
1725	chr11	126973474	126978702	+	0	NA	Intergenic	Intergenic	39191	NR_120578	101929473	Hs.737523	NR_120578	ENSG00000255087	LOC101929473	-	uncharacterized LOC101929473	ncRNA	1.057	4.185	2.174	4.658	9.608	4.803	7.088	0.005	0.031	0.536	0.289	8.867	11.739	0.085	0.085	1.776	2.300	0.157	0.390	13.047	12.102	9.861	2.432	0.158	0.116	0.184	0.353	10.526	10.076	3.319	3.350	2.420	4.241	6.284	4.672	0.378	nan	4.265	2.472	6.778	6.097	1.729	1.441	7.088	8.867	0.596		4.265	0.322
4965	chr20	45238907	45256048	+	0	NA	intron (NM_001193340, intron 2 of 12)	intron (NM_001193340, intron 2 of 12)	32623	NM_001193342	64849	Hs.655498	NM_022829	ENSG00000158296	SLC13A3	NADC3|SDCT2	solute carrier family 13 member 3	protein-coding	nan	nan	1.055	0.550	1.022	0.599	0.208	0.122	0.152	0.101	0.115	0.805	0.666	0.062	0.123	0.596	0.476	0.242	0.301	0.272	0.427	nan	2.220	0.170	0.158	0.243	0.378	0.917	0.818	nan	0.327	0.247	0.428	0.096	0.099	0.326	0.870	0.389	0.426	0.049	0.169	0.017	0.153	0.208	0.805	0.028	0.083	0.169	0.196
6978	chr6	134735772	134875660	+	0	NA	intron (NR_038219, intron 4 of 4)	L1MC4a|LINE|L1	-5681	NR_125852	101928231	Hs.634168	NR_125852		LOC101928231	-	uncharacterized LOC101928231	ncRNA	0.773	0.925	1.019	0.253	0.331	0.203	0.494	0.244	0.102	0.093	0.087	0.141	0.586	6.442	0.253	0.474	0.373	0.380	0.448	0.399	0.457	nan	0.402	0.268	0.307	0.295	0.480	0.364	0.343	0.576	0.251	0.208	0.266	0.105	0.115	0.305	nan	0.430	0.387	0.103	0.099	0.024	0.104	0.494	0.141	0.109	0.355	0.081	0.085
2379	chr13	95079024	95091223	+	0	NA	Intergenic	L1MB4|LINE|L1	46813	NM_001129889	1638	Hs.301865	NM_001922	ENSG00000080166	DCT	TRP-2|TYRP2	dopachrome tautomerase	protein-coding	1.456	1.703	1.304	0.153	0.874	0.613	0.829	0.108	0.014	0.184	0.100	0.481	1.689	0.045	0.088	1.739	2.227	0.396	0.594	0.469	0.617	3.310	1.074	0.302	0.257	0.366	0.443	0.958	0.740	0.883	0.792	0.845	1.358	2.111	1.956	2.822	7.829	0.385	0.279	1.827	1.761	0.454	0.554	0.829	0.481	0.183	0.142	0.480	1.746
727	chr1	185446337	185458882	+	0	NA	Intergenic	L1MC4a|LINE|L1	145011	NR_110793	101929093	Hs.535227	NR_110793	ENSG00000228309	LINC01350	GS1-204I12.1	long intergenic non-protein coding RNA 1350	ncRNA	nan	nan	1.526	2.076	1.077	0.562	5.639	0.376	0.254	0.342	0.262	1.479	2.281	1.243	0.075	1.517	2.231	0.815	2.051	4.280	nan	3.005	0.617	nan	0.685	1.849	1.954	0.924	0.721	3.103	2.459	2.003	3.180	0.657	0.816	1.263	nan	1.821	1.189	0.120	0.822	0.158	2.608	5.639	1.479	0.613	0.284	0.678	0.421
5827	chr4	5878345	5896777	+	0	NA	intron (NM_001014809, intron 1 of 13)	intron (NM_001014809, intron 1 of 13)	1979	NM_001288662	1400	Hs.135270	NM_001313	ENSG00000072832	CRMP1	CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3	collapsin response mediator protein 1	protein-coding	1.785	1.313	nan	2.505	1.470	0.817	1.637	0.048	0.026	0.861	0.737	3.713	4.468	0.871	0.078	1.165	2.102	0.234	0.404	2.652	2.340	nan	0.915	0.167	0.176	0.611	1.081	2.495	3.151	2.346	2.177	0.711	1.535	1.536	1.719	1.046	2.051	nan	0.906	1.133	4.587	0.594	1.359	1.637	3.713	0.338	0.697	0.668	0.691
8196	chr9	92752199	92782006	+	0	NA	Intergenic	Intergenic	18715	NR_036253	100422963		NR_036253	ENSG00000263967	MIR4290	-	microRNA 4290	ncRNA	0.971	nan	2.460	2.749	2.018	0.909	0.978	0.191	0.059	0.965	0.486	1.394	3.324	0.033	0.071	0.252	0.398	0.398	nan	2.023	1.912	1.794	0.559	0.170	0.155	0.630	0.819	4.741	4.292	0.414	0.261	0.250	0.496	1.339	1.418	0.364	0.836	2.071	1.084	1.412	1.742	0.387	0.254	0.978	1.394	0.221	1.257	0.348	0.314
4600	chr2	174264846	174318502	+	0	NA	Intergenic	AluSz|SINE|Alu	72113	NM_145810	83879	Hs.470654	NM_031942	ENSG00000144354	CDCA7	ICF3|JPO1	cell division cycle associated 7	protein-coding	1.792	0.966	1.202	0.180	0.323	0.167	0.404	0.222	0.072	0.088	0.105	0.207	0.412	0.664	0.104	0.510	0.481	0.294	0.352	0.267	0.322	0.249	0.108	0.359	0.363	1.538	1.891	0.791	1.003	3.086	2.722	0.232	0.370	0.059	0.091	2.148	6.994	0.395	0.371	0.117	0.053	0.025	0.224	0.404	0.207	0.274	0.079	0.071	2.773
2619	chr14	58563497	58569779	+	0	NA	intron (NM_001001872, intron 4 of 7)	L2a|LINE|L2	52319	NM_001001872	145407	Hs.26766	NM_001001872	ENSG00000139971	C14orf37	UT2|c14_5376	chromosome 14 open reading frame 37	protein-coding	nan	nan	1.809	0.382	0.528	0.254	0.346	0.072	0.124	0.223	0.164	0.381	0.314	0.084	0.119	0.412	0.316	0.250	0.351	0.395	0.598	0.214	0.104	0.435	0.427	0.221	0.433	1.155	0.725	0.543	0.283	0.263	0.473	0.101	0.200	1.429	2.747	nan	0.661	0.045	0.111	0.040	0.074	0.346	0.381	0.063	4.908	0.078	0.416
4858	chr20	14199763	14204123	+	0	NA	intron (NM_080676, intron 3 of 16)	MIRb|SINE|MIR	116370	NM_198391	23767	Hs.41296	NM_013281	ENSG00000125848	FLRT3	HH21	fibronectin leucine rich transmembrane protein 3	protein-coding	0.821	nan	0.892	0.588	0.278	0.110	0.352	0.173	0.172	0.155	0.057	0.268	0.611		0.069	2.061	2.540	12.118	9.833	0.347	0.520	4.409	0.936	22.610	24.308	0.528	0.678	2.185	2.078	0.769	0.408	1.519	3.029	1.848	3.271	0.723	2.343	0.480	0.465	0.025	0.170	0.198	0.145	0.352	0.268	0.288	0.210	1.895	0.148
2834	chr15	31689166	31696368	+	0	NA	intron (NM_001302461, intron 1 of 1)	L2a|LINE|L2	73709	NM_015995	51621	Hs.376443	NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel like factor 13	protein-coding	1.280	nan	nan	0.750	1.235	0.558	0.521	0.508	0.045	0.628	0.262	0.759	2.713	0.074	0.037	0.652	1.561	0.325	0.689	0.619	0.810	2.125	0.487	0.256	0.347	0.385	0.717	0.968	1.077	1.864	1.816	0.652	1.184	2.281	1.767	0.433	0.659	0.656	0.422	0.616	0.630	0.597	0.417	0.521	0.759	3.262	1.804	0.853	0.174
6720	chr6	33774325	33843732	+	0	NA	Intergenic	Intergenic	-37235	NM_002418	4295	Hs.2813	NM_002418	ENSG00000096395	MLN	-	motilin	protein-coding	nan	2.139	nan	0.291	0.484	0.256	0.811	0.099	0.100	0.143	0.124	0.526	0.774	0.108	0.102	0.794	1.028	0.236	nan	nan	0.789	1.209	0.342	0.336	0.402	0.318	0.637	2.116	2.052	1.282	1.167	0.501	0.511	0.602	0.843	1.309	3.861	0.785	0.643	2.336	0.659	0.182	0.522	0.811	0.526	0.270	0.423	0.144	1.465
1127	chr10	65294147	65323141	+	0	NA	intron (NM_001001330, intron 1 of 7)	intron (NM_001001330, intron 1 of 7)	-26809	NM_001322258	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding	0.946	nan	1.137	0.098	0.342	0.194	0.084	0.810	0.226	0.206	0.160	0.191	0.316	0.088	0.108	0.432	0.357	1.261	2.855	0.250	0.326	0.421	0.205	0.411	0.393	3.531	3.592	0.417	0.501	0.903	0.695	0.124	0.185	0.118	0.152	0.462	nan	0.430	0.293	0.038	0.051	0.029	0.047	0.084	0.191	0.339	0.046	0.027	0.299
4237	chr2	17124337	17132172	+	0	NA	Intergenic	Intergenic	-281120	NM_030797	81553	Hs.467769	NM_030797	ENSG00000197872	FAM49A	-	family with sequence similarity 49 member A	protein-coding	0.762	0.481	0.788	1.982	6.068	2.741	0.403	0.049	0.041	2.079	1.073	1.042	0.688	0.027	0.078	0.326	0.206	11.567	5.086	0.798	0.911	7.728	5.290	0.502	0.439	0.368	0.587	2.211	nan	1.980	1.215	0.182	0.280	2.068	2.614	0.805	nan	2.003	1.257	0.014	0.103	0.669	0.438	0.403	1.042		0.078	0.050	0.453
4415	chr2	85196255	85200538	+	0	NA	5' UTR (NM_020122, exon 1 of 7)	5' UTR (NM_020122, exon 1 of 7)	165	NM_020122	56888	Hs.654968	NM_020122	ENSG00000176407	KCMF1	DEBT91|FIGC|PCMF|ZZZ1	potassium channel modulatory factor 1	protein-coding	8.625	3.178	6.087	4.947	5.569	2.428	6.349	3.239	0.223	3.468	1.723	7.412	9.796	6.477	0.294	6.897	6.123	9.554	14.213	11.085	11.144	10.224	4.372	19.523	18.298	4.774	6.647	10.655	18.161	7.130	8.474	3.331	8.532	3.735	3.027	12.031	7.286	4.960	3.090	2.975	3.590	0.577	3.225	6.349	7.412	1.291	4.166	1.588	2.712
4850	chr20	10762867	10781653	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	38522	NR_110611	101929395	Hs.244862	NR_110611	ENSG00000224961	LINC01752	-	long intergenic non-protein coding RNA 1752	ncRNA	0.620	nan	1.310	1.144	0.643	0.333	0.196	0.232	0.120	0.543	0.303	0.446	1.110	0.046	0.062	0.792	0.469	0.494	0.933	0.776	0.766	6.305	2.831	0.263	0.316	0.603	0.857	2.146	2.261	0.574	0.290	0.181	0.324	0.353	0.616	0.147	0.221	0.998	0.851	0.035	0.241	0.091	0.097	0.196	0.446	0.062	0.548	0.043	0.033
2222	chr12	133351650	133354710	+	0	NA	intron (NM_005895, intron 21 of 23)	intron (NM_005895, intron 21 of 23)	-14706	NM_015114	23141	Hs.654628	NM_015114	ENSG00000176915	ANKLE2	KIAA0692|LEMD7|Lem4|MCPH16	ankyrin repeat and LEM domain containing 2	protein-coding	1.462	0.621	4.957	0.173	0.199	0.104	0.621	0.132	0.067	0.221	0.076	0.160	0.343	0.035	0.042	0.318	0.351	0.288	0.401	20.161	13.974	0.363	0.156	0.342	0.218	0.201	0.386	nan	0.302	0.322	0.179	0.220	0.269	0.152	0.115	0.217	0.403	2.010	1.339	0.089	0.468	0.063	1.127	0.621	0.160	0.636	0.198	0.085	0.040
1900	chr12	31450023	31480673	+	0	NA	intron (NM_021238, intron 1 of 6)	L1ME3|LINE|L1	-11902	NR_026806	79857	Hs.534485	NM_024799	ENSG00000177340	FLJ13224	-	uncharacterized LOC79857	ncRNA	3.261	nan	2.576	3.257	1.558	0.749	1.398	0.081	0.078	1.557	0.733	1.929	3.036	1.093	0.127	2.105	2.283	2.716	4.287	4.049	3.649	3.282	1.373	6.195	6.462	1.199	1.623	1.707	2.843	2.741	3.226	1.123	2.298	7.342	7.863	3.870	5.733	1.563	1.123	1.148	1.414	1.922	2.093	1.398	1.929	0.548	1.755	0.655	1.583
5915	chr4	57071925	57085712	+	0	NA	intron (NM_020722, intron 2 of 10)	MER57A-int|LTR|ERV1	42457	NM_020722	57482	Hs.596667	NM_020722	ENSG00000109265	KIAA1211	-	KIAA1211	protein-coding	nan	0.517	0.560	0.181	0.398	0.209	0.225	0.081	0.058	0.238	0.160	0.087	0.206	0.039	0.093	0.346	0.304	0.238	0.319	0.248	0.236	2.051	1.151	0.290	0.249	0.791	1.077	0.368	0.468	0.377	0.144	0.143	0.286	0.564	0.942	0.256	0.543	4.466	2.478	0.020	0.106	0.138	0.224	0.225	0.087	0.056	0.130	0.076	0.100
6154	chr5	6055971	6073088	+	0	NA	Intergenic	L1MC1|LINE|L1	272876	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	LINC02145	-	long intergenic non-protein coding RNA 2145	ncRNA	0.474	0.834	0.936	0.187	0.246	0.159	0.078	0.172	0.132	0.128	0.206	0.161	0.625	0.063	0.113	3.700	2.405	10.238	nan	0.719	0.702	0.102	0.073	14.709	15.416	0.197	0.309	nan	0.599	nan	0.350	1.331	2.992	0.044	0.087	0.094	0.220	0.668	nan	0.022	0.240	0.006	0.075	0.078	0.161	0.011	0.047	0.977	0.022
7495	chr7	134549558	134555291	+	0	NA	intron (NM_033157, intron 2 of 14)	intron (NM_033157, intron 2 of 14)	-23727	NM_033139	800	Hs.490203	NM_004342	ENSG00000122786	CALD1	CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22	caldesmon 1	protein-coding	nan	nan	nan	0.463	0.158	0.084	0.022	1.496	0.060	0.136	0.183	0.021	0.269	0.113	0.148	1.408	0.843	4.302	1.854	0.633	0.753	nan	0.025	0.363	0.391	0.317	nan	0.707	0.753	nan	0.205	7.444	6.437	0.088	0.096	0.268	0.564	1.044	nan	0.010	0.186		0.014	0.022	0.021	0.018	0.097	2.856	0.042
3460	chr17	53539903	53575409	+	0	NA	Intergenic	Intergenic	-58315	NM_012329	23531	Hs.463483	NM_012329	ENSG00000108960	MMD	MMA|MMD1|PAQR11	monocyte to macrophage differentiation associated	protein-coding	1.161	0.971	1.040	0.079	0.249	0.131	0.141	0.139	0.114	0.079	0.098	0.061	0.301	0.058	0.111	0.439	0.289	0.161	0.300	0.292	0.330	0.109	0.081	nan	0.400	0.470	0.707	nan	nan	0.595	0.278	0.161	0.216	0.095	0.104	1.106	4.239	0.331	0.451	0.011	0.077	0.024	0.067	0.141	0.061	0.027	0.043	0.031	1.073
954	chr1	243538412	243544925	+	0	NA	intron (NM_006642, intron 12 of 17)	intron (NM_006642, intron 12 of 17)	32190	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA	nan	1.307	nan	0.108	0.430	0.144	0.197	0.252	0.073	0.053	0.251	0.092	0.207	0.033	0.057	0.422	0.255	0.301	0.431	0.469	0.773	0.229	0.157	0.474	0.450	8.031	7.972	0.219	0.242	4.596	3.477	0.121	0.173	0.167	0.077	0.265	0.648	0.435	0.422	0.033	0.041	0.014	0.061	0.197	0.092	0.267	0.062	0.049	0.075
4524	chr2	142277585	142295424	+	0	NA	intron (NM_018557, intron 2 of 90)	intron (NM_018557, intron 2 of 90)	602766	NM_018557	53353	Hs.656461	NM_018557	ENSG00000168702	LRP1B	LRP-1B|LRP-DIT|LRPDIT	LDL receptor related protein 1B	protein-coding	0.932	nan	0.799	0.063	0.301	0.162	0.123	0.058	0.054	0.072	0.102	0.104	0.283	0.024	0.091	0.258	0.232	0.260	0.301	0.254	0.220	0.106	0.040	0.148	0.149	3.890	3.762	0.361	0.287	0.404	0.265	0.102	0.249	0.052	0.085	0.357	0.598	0.105	0.144	0.012	0.035	0.022	0.106	0.123	0.104	0.095	0.017	0.033	0.160
801	chr1	203952301	203973517	+	0	NA	Intergenic	AluJb|SINE|Alu	47483	NR_027902	284573	Hs.406979	NR_027902	ENSG00000176754	LINC00303	C1orf157|NCRNA00303	long intergenic non-protein coding RNA 303	ncRNA	1.087	1.111	0.983	0.501	0.942	0.495	0.802	0.149	0.171	0.171	0.245	1.996	0.811	0.055	0.115	0.676	0.958	5.937	4.967	2.540	2.320	0.726	0.219	nan	nan	0.272	0.418	0.848	0.834	0.321	0.171	0.872	1.202	0.250	0.288	0.302	0.657	0.543	0.536	0.063	0.738	0.049	1.357	0.802	1.996	0.023	0.024	0.779	0.074
5376	chr3	53265164	53272284	+	0	NA	intron (NM_001135055, intron 5 of 14)	intron (NM_001135055, intron 5 of 14)	21406	NM_001135055	7086	Hs.89643	NM_001064	ENSG00000163931	TKT	HEL-S-48|HEL107|SDDHD|TK|TKT1	transketolase	protein-coding	0.629	1.592	nan	0.820	0.219	0.131	0.220	0.347	0.092	0.194	0.059	0.097	0.449	0.090	0.063	0.411	0.456	0.664	1.525	0.442	0.460	1.270	0.182	1.523	1.387	0.203	0.373	0.835	0.798	nan	0.322	0.397	0.486	0.342	1.437	0.252	0.601	0.812	0.453	0.180	0.142	0.068	0.257	0.220	0.097	0.107	3.562	0.041	0.123
3151	chr16	57820214	57854470	+	0	NA	promoter-TSS (NM_001130100)	promoter-TSS (NM_001130100)	-406	NM_001318710	3801	Hs.23131	NM_005550	ENSG00000140859	KIFC3	-	kinesin family member C3	protein-coding	nan	nan	nan	1.547	0.533	0.234	0.956	0.251	0.104	0.083	0.118	2.005	3.579	0.234	0.069	0.501	0.606	0.487	1.140	1.135	1.131	0.809	0.204	0.242	0.257	0.250	nan	nan	nan	nan	0.945	0.245	0.317	0.111	0.157	0.474	nan	nan	0.853	1.722	1.300	0.036	0.106	0.956	2.005	0.079	0.605	0.103	0.137
8165	chr9	78611391	78664976	+	0	NA	intron (NM_006200, intron 3 of 20)	intron (NM_006200, intron 3 of 20)	132623	NM_001190482	5125	Hs.368542	NM_006200	ENSG00000099139	PCSK5	PC5|PC6|PC6A|SPC6	proprotein convertase subtilisin/kexin type 5	protein-coding	nan	nan	nan	0.150	0.137	0.072	0.133	0.053	0.104	0.096	0.104	0.056	0.283	0.035	0.079	0.883	0.917	6.297	nan	0.316	nan	0.171	0.093	1.214	1.172	0.092	0.147	0.390	0.377	0.183	0.091	0.787	1.296	0.073	0.126	0.250	0.403	0.297	0.366	0.008	0.037	0.007	0.041	0.133	0.056	0.007	0.035	1.127	0.113
5680	chr3	174031297	174045418	+	0	NA	Intergenic	L1PA3|LINE|L1	-399771	NR_046664	100874010	Hs.624265	NR_046664	ENSG00000228213	NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA	0.959	1.018	0.734	0.118	0.342	0.171	0.153	2.844	0.267	0.137	0.238	0.085	0.154	0.041	0.103	0.284	0.247	0.236	0.707	0.307	0.328	0.885	0.342	0.265	0.244	3.457	4.488	0.331	0.318	0.653	0.319	0.099	0.184	0.201	0.265	0.354	0.611	0.422	0.374	0.043	0.019	0.054	0.034	0.153	0.085	0.007	0.051	0.035	0.113
3061	chr16	14722421	14734526	+	0	NA	intron (NM_001330500, intron 1 of 5)	FLAM_C|SINE|Alu	1805	NM_016561	51283	Hs.435556	NM_016561	ENSG00000103429	BFAR	BAR|RNF47	bifunctional apoptosis regulator	protein-coding	3.258	2.122	nan	2.841	2.388	0.913	1.859	1.412	0.360	1.615	0.667	1.918	5.018	1.789	0.113	2.507	2.120	1.963	3.091	2.025	2.035	6.188	2.408	7.460	7.279	2.070	2.836	3.511	5.287	nan	2.153	1.533	2.296	2.147	2.881	3.628	4.832	1.937	0.957	1.004	2.051	0.362	1.003	1.859	1.918	1.108	0.972	0.751	2.539
1563	chr11	86297205	86301328	+	0	NA	intron (NM_001014811, intron 1 of 13)	intron (NM_001014811, intron 1 of 13)	83974	NM_001014811	10873	Hs.199743	NM_006680	ENSG00000151376	ME3	NADP-ME	malic enzyme 3	protein-coding	0.724	1.280	0.726	1.232	1.867	0.995	0.972	0.198		0.341	0.243	0.263	1.749	0.015	0.106	0.867	0.743	0.585	1.718	2.041	2.126	0.671	0.218	0.494	0.617	0.316	0.458	0.626	0.690	0.453	0.201	0.265	0.295	1.194	2.399	0.225	0.723	2.080	1.027	0.815	0.152	0.324	0.294	0.972	0.263	3.556	0.049	0.024	0.090
1003	chr10	5041261	5069351	+	0	NA	intron (NM_001354, intron 1 of 10)	L1PA13|LINE|L1	4919	NM_001354	1646	Hs.460260	NM_001354	ENSG00000151632	AKR1C2	AKR1C-pseudo|BABP|DD|DD-2|DD/BABP|DD2|DDH2|HAKRD|HBAB|MCDR2|SRXY8|TDD	aldo-keto reductase family 1 member C2	protein-coding	0.367	1.487	0.581	2.942	0.574	0.357	0.442	0.610	0.131	0.101	0.100	0.740	0.426	0.046	0.102	0.393	0.218	0.513	1.053	0.813	0.834	7.902	1.305	1.674	1.679	0.131	0.236	1.306	0.974	0.155	0.083	0.208	0.217	0.427	1.519	0.148	0.195	0.308	0.400	0.022	0.424	0.027	1.311	0.442	0.740	0.111	1.604	0.102	0.027
5845	chr4	20970710	20988116	+	0	NA	intron (NM_147182, intron 2 of 8)	intron (NM_147182, intron 2 of 8)	-95080	NM_025221	80333	Hs.655705	NM_025221	ENSG00000185774	KCNIP4	CALP|KCHIP4	potassium voltage-gated channel interacting protein 4	protein-coding	0.505	0.449	nan	0.030	0.086	0.046	0.081	0.060	0.025	0.108	0.096	0.048	0.256	0.075	0.073	0.523	0.403	0.205	0.258	0.228	0.226	0.149	0.115	8.792	8.630	0.102	0.142	0.197	0.199	0.372	0.200	0.101	0.164	0.063	0.035	0.174	0.327	nan	0.568	0.170	0.221	0.006	0.086	0.081	0.048		0.012	0.017	0.043
6055	chr4	157683884	157700389	+	0	NA	intron (NM_016205, intron 4 of 5)	intron (NM_016205, intron 4 of 5)	200410	NM_016205	56034	Hs.570855	NM_016205	ENSG00000145431	PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding	nan	2.434	0.956	0.270	0.169	0.117	0.311	2.651	0.195	0.115	0.096	0.280	0.850	2.035	0.105	0.167	0.163	0.612	3.294	0.400	0.404	0.645	0.230	0.168	0.139	2.769	3.793	0.906	0.655	0.520	0.294	0.091	0.145	1.052	1.480	0.478	1.091	0.538	0.343	0.569	0.168	0.293	0.194	0.311	0.280	0.041	0.456	0.018	0.180
1800	chr12	6975737	6983903	+	0	NA	TTS (NM_001146316)	TTS (NM_001146316)	2542	NM_001258026	7167	Hs.524219	NM_000365	ENSG00000111669	TPI1	HEL-S-49|TIM|TPI|TPID	triosephosphate isomerase 1	protein-coding	3.466	nan	nan	5.960	2.981	1.549	2.948	0.781	0.120	1.559	1.170	2.745	8.796	4.128	0.157	1.412	2.193	3.526	4.570	nan	7.435	7.924	2.699	3.816	4.129	2.900	4.144	3.193	3.775	3.181	4.463	1.439	3.736	2.934	2.089	2.497	5.546	1.334	0.518	2.407	3.891	0.619	3.063	2.948	2.745	5.020	0.917	1.398	2.126
4230	chr2	16051461	16188966	+	0	NA	Intergenic	AluJb|SINE|Alu	-37842	NM_001329968	10408	Hs.651453	NM_006316	ENSG00000233718	MYCNOS	MYCN-AS1|N-CYM|NCYM|NYCM	MYCN opposite strand	protein-coding	6.517	3.491	7.495	0.369	0.184	0.104	0.114	0.058	0.079	0.096	0.102	0.052	0.772	0.048	0.098	0.578	0.530	0.463	0.765	0.575	0.507	0.801	0.288	0.584	0.564	0.219	0.352	0.459	nan	0.793	0.548	13.595	15.404	17.716	18.199	0.496	nan	0.166	0.291	0.899	0.796	6.373	0.033	0.114	0.052	0.026	0.301	6.955	0.154
1717	chr11	125981124	126021804	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-68277	NM_001243597	50937	Hs.38034	NM_016952	ENSG00000064309	CDON	CDO|CDON1|HPE11|ORCAM	cell adhesion associated, oncogene regulated	protein-coding	1.302	0.983	1.319	1.022	1.466	0.789	0.503	0.632	0.091	1.102	0.644	1.777	1.468	0.082	0.107	0.686	1.238	0.566	1.174	1.178	1.536	0.768	0.389	0.542	0.593	0.666	1.127	3.815	4.675	1.478	1.603	1.380	2.342	0.296	0.253	0.613	nan	1.327	0.789	4.371	0.338	0.040	0.384	0.503	1.777	0.294	0.347	1.587	0.469
4349	chr2	53159519	53191516	+	0	NA	Intergenic	Intergenic	-245764	NR_039630	100616431		NR_039630	ENSG00000264975	MIR4431	-	microRNA 4431	ncRNA	6.023	nan	5.980	0.175	0.255	0.145	0.219	0.275	0.081	0.112	0.138	0.088	0.234	0.055	0.119	0.352	0.209	0.193	0.402	0.310	0.360	0.100	0.066	0.374	0.347	0.341	0.501	0.426	0.341	0.440	0.249	0.094	0.209	12.113	15.539	0.257	0.407	0.353	0.365	0.038	0.086	2.049	0.062	0.219	0.088	0.039	0.076	0.040	0.062
2557	chr14	36736226	36754046	+	0	NA	Intergenic	Intergenic	44746	NM_016586	51562	Hs.368647	NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding	1.104	5.096	0.669	2.268	0.537	0.269	0.702	0.167	0.153	1.087	0.357	0.319	1.818	0.128	0.112	0.190	0.128	0.220	0.250	0.615	0.752	0.407	0.176	0.214	0.238	0.433	0.649	1.316	1.982	0.781	0.430	0.113	0.222	0.668	0.760	0.181	0.373	2.144	1.038	4.499	2.279	0.133	0.131	0.702	0.319	0.045	0.458	0.045	0.097
1634	chr11	111651101	111669446	+	0	NA	intron (NM_001077690, intron 15 of 15)	Looper|DNA|PiggyBac	-23104	NM_181699	5519	Hs.269128	NM_002716	ENSG00000137713	PPP2R1B	PP2A-Abeta|PR65B	protein phosphatase 2 scaffold subunit Abeta	protein-coding	0.919	0.831	0.769	0.243	0.374	0.148	0.203	0.130	0.061	0.163	0.165	0.114	0.320	0.065	0.110	1.691	nan	0.316	0.771	0.612	0.793	0.455	0.222	0.364	0.361	2.380	nan	0.449	0.435	0.577	0.394	0.550	0.811	0.135	0.216	0.470	1.446	0.608	0.520	0.169	0.126	0.053	0.109	0.203	0.114	0.200	0.216	0.153	0.461
1848	chr12	14921596	14930861	+	0	NA	Intergenic	Intergenic	-1042	NM_177925	55766	Hs.524280	NM_018267	ENSG00000246705	H2AFJ	H2AJ	H2A histone family member J	protein-coding	2.363	2.117	3.803	5.530	2.447	1.472	1.587	0.698	0.100	2.980	1.917	2.325	6.484	8.005	0.226	1.335	1.790	2.170	3.425	nan	4.911	8.511	3.526	8.713	8.803	1.233	1.431	4.185	6.334	3.407	4.366	1.070	1.969	3.491	3.194	3.159	4.564	1.956	1.156	1.949	2.449	0.595	1.164	1.587	2.325	0.198	0.984	0.912	1.637
4882	chr20	21029927	21035653	+	0	NA	Intergenic	Intergenic	-73834	NM_001163022	55857	Hs.187635	NM_018474	ENSG00000088970	KIZ	C20orf19|HT013|Kizuna|NCRNA00153|PLK1S1|RP69	kizuna centrosomal protein	protein-coding	0.753	1.091	nan	0.131	0.334	0.139	0.177	0.093	0.056	0.136	0.071	0.375	0.328	0.056	0.083	7.465	7.977	7.691	5.805	0.549	0.665	0.900	0.346	0.260	0.330	0.220	0.405	0.267	0.388	0.527	0.306	4.511	4.387	0.112	0.115	0.229	0.270	1.251	0.833	0.010	0.032	0.051		0.177	0.375	0.118	0.053	1.865	0.130
7067	chr6	157253311	157265935	+	0	NA	intron (NM_020732, intron 5 of 19)	intron (NM_020732, intron 5 of 19)	-158758	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA	nan	1.013	1.533	0.982	0.771	0.508	0.461	0.163	0.114	0.544	0.456	1.040	2.779	0.098	0.105	1.958	2.699	0.918	2.086	1.545	nan	6.135	2.483	0.499	0.656	0.584	0.671	1.528	1.497	1.109	0.956	0.544	1.167	1.469	1.818	0.431	nan	0.746	0.440	1.180	0.590	0.308	0.554	0.461	1.040	0.072	0.066	0.704	0.246
8288	chr9	131143069	131154268	+	0	NA	intron (NM_030914, intron 2 of 4)	intron (NM_030914, intron 2 of 4)	-6232	NR_039815	100616335		NR_039815	ENSG00000283335	MIR219B	MIR2964A|hsa-mir-219b|mir-219b	microRNA 219b	ncRNA	nan	0.482	1.426	0.188	0.334	0.100	0.720	0.144	0.172	0.166	0.090	0.256	0.425	0.049	0.096	0.960	0.858	0.281	0.391	0.724	0.710	nan	0.134	0.427	0.511	0.316	0.542	1.314	1.460	4.587	4.057	0.200	0.278	0.139	0.153	1.299	2.399	2.731	1.645	6.507	0.420	0.017	0.078	0.720	0.256	1.603	0.435	0.029	0.375
4706	chr2	213757511	213784939	+	0	NA	Intergenic	Intergenic	-19756	NR_039935	100616267		NR_039935	ENSG00000266354	MIR4776-1	mir-4776-1	microRNA 4776-1	ncRNA	nan	1.428	nan	0.369	0.457	0.226	0.126	0.168	0.059	0.121	0.077	0.166	2.076	0.047	0.106	0.362	0.276	1.173	6.018	0.222	0.267	0.598	0.212	0.214	0.235	0.439	0.694	0.703	nan	0.339	0.153	0.125	0.276	0.304	0.402	0.285	0.525	0.550	0.436	0.014	0.110	0.076	0.066	0.126	0.166	0.015	0.074	0.079	0.045
2486	chr14	23444409	23455945	+	0	NA	intron (NM_001289097, intron 1 of 1)	CpG	1674	NM_001289097	84962	Hs.655832	NM_032876	ENSG00000129474	AJUBA	JUB	ajuba LIM protein	protein-coding	nan	0.693	1.276	0.448	0.530	0.348	0.503	2.668	0.507	0.081	0.109	0.384	1.692	6.805	0.188	2.068	2.668	7.803	7.758	0.634	0.776	1.157	0.262	0.518	0.590	1.927	1.997	0.787	nan	0.932	0.598	1.013	1.624	0.329	0.488	0.463	1.432	0.868	0.558	2.258	0.169	0.065	0.130	0.503	0.384	0.673	0.598	0.825	0.204
5793	chr3	194205837	194209765	+	0	NA	promoter-TSS (NR_033929)	promoter-TSS (NR_033929)	-68	NR_033929	401106	Hs.407087	NR_033929		LINC00884	-	long intergenic non-protein coding RNA 884	ncRNA	5.749	5.635	1.892	2.994	2.714	2.233	3.030	4.886	0.244	7.249	2.630	5.877	nan	1.721	0.074	2.728	2.703	3.783	5.987	6.482	5.146	7.679	4.815	24.587	24.573	2.232	3.511	4.078	7.210	5.411	6.404	2.798	5.258	9.630	9.711	3.723	2.990	2.109	1.096	3.142	2.916	2.237	1.898	3.030	5.877	0.697	2.426	1.130	1.165
3277	chr17	9911496	9937750	+	0	NA	intron (NM_201433, intron 1 of 13)	intron (NM_201433, intron 1 of 13)	5000	NM_001130831	8522	Hs.462214	NM_003644	ENSG00000007237	GAS7	MLL/GAS7	growth arrest specific 7	protein-coding	0.748	0.753	0.589	0.024	0.175	0.104	0.092	0.051	0.093	0.042	0.054	0.045	0.164	0.078	0.096	1.747	2.646	1.521	4.152	0.171	0.188	0.117	0.057	0.063	0.061	0.104	0.160	0.117	0.131	0.548	0.349	0.419	0.738	0.028	0.027	0.431	0.926	0.052	0.081	0.248	0.020	0.022	0.021	0.092	0.045	0.004	0.077	0.447	0.240
2317	chr13	59980784	59985615	+	0	NA	Intergenic	Intergenic	-603653	NR_046539	100874195	Hs.664101	NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA	nan	0.996	nan	0.037	0.398	0.066	0.431	0.047		0.065	0.204	0.644	1.590		0.104	0.706	0.422	9.047	10.898	1.173	1.213	0.829	0.314	0.723	0.710	0.953	1.076	0.174	0.142	0.882	0.761	0.197	0.591	1.896	1.572	1.682	3.793	0.627	0.402	0.827	0.091	0.252	0.332	0.431	0.644	1.014	0.146	0.083	0.481
6015	chr4	128692747	128706575	+	0	NA	Intergenic	MER61F|LTR|ERV1	-3315	NM_001317381	22824	Hs.135554	NM_014278	ENSG00000164070	HSPA4L	APG-1|HSPH3|Osp94	heat shock protein family A (Hsp70) member 4 like	protein-coding	1.672	1.463	nan	0.866	1.121	0.562	0.321	1.024	0.082	0.271	0.224	0.964	1.398	0.485	0.094	2.138	1.993	2.580	2.798	1.349	1.227	1.314	0.528	2.070	2.240	1.026	1.364	0.958	2.208	1.966	2.242	6.659	10.684	0.685	0.738	1.080	1.260	0.846	0.588	0.318	0.373	0.056	0.529	0.321	0.964	0.028	0.674	5.423	0.306
1433	chr11	60666239	60682850	+	0	NA	promoter-TSS (NM_014502)	promoter-TSS (NM_014502)	-483	NM_014502	27339	Hs.502705	NM_014502	ENSG00000110107	PRPF19	NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4	pre-mRNA processing factor 19	protein-coding	nan	1.881	2.879	2.581	1.732	0.968	1.708	0.974	0.117	0.969	0.425	1.813	2.904	1.210	0.147	2.788	2.743	2.031	3.116	4.480	3.942	4.455	1.898	2.928	3.115	2.683	3.541	3.095	4.259	3.140	3.585	1.438	2.129	2.546	2.912	2.131	2.382	2.168	1.277	1.878	1.247	0.436	0.583	1.708	1.813	0.756	0.921	0.560	0.533
1666	chr11	115826107	115847879	+	0	NA	Intergenic	Intergenic	-206075	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA	0.894	0.779	0.895	1.006	2.171	1.282	0.646	0.036	0.073	1.667	0.971	4.276	2.369	0.045	0.099	0.783	nan	0.222	0.333	0.879	0.886	3.854	0.992	0.149	0.104	1.312	nan	4.551	3.212	0.717	0.387	1.213	1.575	1.016	1.029	1.171	2.650	2.052	1.010	1.195	0.297	0.184	2.595	0.646	4.276	0.713	1.037	0.668	1.028
6477	chr5	140936647	140945263	+	0	NA	intron (NR_038333, intron 1 of 2)	intron (NR_038333, intron 1 of 2)	3077	NR_038333	100505658	Hs.655458	NR_038333	ENSG00000246422	LOC100505658	-	uncharacterized LOC100505658	ncRNA	nan	2.129	1.797	1.211	3.386	1.807	0.762	1.221	0.057	0.838	0.612	3.624	4.927	1.884	0.137	2.456	1.895	4.028	6.568	6.041	5.422	6.071	4.307	8.815	9.849	4.283	4.411	0.855	0.917	5.997	5.192	0.794	0.946	3.919	5.594	3.019	3.909	3.458	1.737	1.296	1.970	0.609	1.353	0.762	3.624	0.791	2.285	0.175	0.703
922	chr1	232713547	232737156	+	0	NA	Intergenic	Intergenic	-73997	NM_020808	57568	Hs.745009	NM_020808	ENSG00000116991	SIPA1L2	SPAL2	signal induced proliferation associated 1 like 2	protein-coding	1.461	2.248	1.326	0.652	4.702	2.458	0.573	0.453	0.057	1.658	0.520	1.291	0.780	0.060	0.109	0.462	0.375	1.153	2.342	1.017	1.094	nan	0.630	0.220	0.193	1.420	1.886	nan	1.864	0.650	0.421	0.258	0.307	0.420	0.717	0.400	0.789	nan	1.653	0.501	0.158	0.105	0.672	0.573	1.291	0.370	0.621	0.151	0.157
3740	chr18	35139177	35160043	+	0	NA	Intergenic	Intergenic	-3610	NM_020180	56853	Hs.435976	NM_020180	ENSG00000101489	CELF4	BRUNOL4|CELF-4	CUGBP, Elav-like family member 4	protein-coding	nan	2.041	1.089	2.168	1.983	1.109	4.076	0.022	0.023	0.916	0.701	3.626	3.462	0.089	0.042	1.846	2.300	0.246	0.351	6.205	5.707	4.412	1.680	0.128	0.141	1.460	1.825	nan	3.659	1.743	2.043	0.482	0.698	3.867	3.595	0.631	0.923	4.897	2.453	6.328	1.402	1.215	1.024	4.076	3.626	0.650	1.150	0.214	0.302
2741	chr14	93152386	93166117	+	0	NA	Intergenic	Intergenic	55796	NM_001008530	5641	Hs.18069	NM_005606	ENSG00000100600	LGMN	AEP|LGMN1|PRSC1	legumain	protein-coding	1.794	2.026	nan	2.519	1.063	0.564	1.371	0.174	0.124	1.038	0.618	1.435	5.833	0.342	0.108	0.442	0.923	0.271	0.377	2.521	2.429	3.245	0.714	2.134	2.358	0.480	0.749	1.697	3.193	1.990	2.075	0.341	0.565	1.386	1.454	0.527	1.100	nan	1.610	1.329	1.309	0.639	0.879	1.371	1.435	0.232	0.555	0.136	0.182
2628	chr14	59652482	59658900	+	0	NA	intron (NM_001270520, intron 1 of 24)	CpG	310	NM_001270520	23002	Hs.19156	NM_014992	ENSG00000100592	DAAM1	-	dishevelled associated activator of morphogenesis 1	protein-coding	8.235	nan	4.227	3.445	1.600	0.850	3.173	2.342	0.050	1.027	0.402	2.961	10.270	0.763	0.146	3.172	3.838	3.168	4.096	5.562	3.593	4.176	1.248	nan	5.727	3.467	5.437	4.803	nan	5.229	6.287	1.468	3.538	4.030	2.517	4.496	3.809	2.339	1.801	2.633	3.723	1.033	5.015	3.173	2.961	0.846	2.072	1.494	0.905
2470	chr13	114477408	114483839	+	0	NA	intron (NM_182614, intron 3 of 8)	intron (NM_182614, intron 3 of 8)	18407	NM_182614	348013	Hs.280805	NM_182614	ENSG00000184497	TMEM255B	FAM70B	transmembrane protein 255B	protein-coding	0.681	nan	0.559	3.165	0.279	0.199	0.617	0.051	0.010	0.072	0.062	4.636	1.435	0.017	0.082	0.631	0.502	0.056	0.149	4.373	2.691	2.897	0.395	0.072	0.084	0.069	0.111	3.340	2.958	0.371	0.218	0.634	0.651	0.657	0.735	0.087	0.197	0.283	0.176	4.177	1.865	0.102	0.037	0.617	4.636	0.137	6.855	0.046	0.039
7044	chr6	150948443	151141329	+	0	NA	intron (NM_001329802, intron 1 of 14)	MLT1F1|LTR|ERVL-MaLR	2817	NM_001329801	57480	Hs.189781	NM_001029884	ENSG00000120278	PLEKHG1	ARHGEF41	pleckstrin homology and RhoGEF domain containing G1	protein-coding	nan	1.049	0.603	0.251	0.219	0.105	0.897	0.081	0.104	0.063	0.085	0.299	0.742	4.069	0.202	0.365	0.211	1.203	2.664	0.670	nan	1.072	0.406	0.277	0.302	0.094	0.171	0.507	0.514	0.684	0.348	0.147	0.256	0.065	0.101	0.159	nan	0.142	0.198	0.124	0.191	0.015	0.050	0.897	0.299	0.085	0.036	0.036	0.034
3456	chr17	49121061	49126874	+	0	NA	exon (NM_001251971, exon 1 of 27)	exon (NM_001251971, exon 1 of 27)	362	NM_001251971	9043	Hs.463439	NM_003971	ENSG00000008294	SPAG9	CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6	sperm associated antigen 9	protein-coding	3.761	1.397	nan	0.599	1.562	0.911	1.186	0.400	0.111	3.135	1.974	2.096	0.414	0.284	0.166	4.541	5.222	3.079	3.365	2.001	nan	4.871	2.047	0.570	0.716	5.847	7.012	2.967	nan	14.146	14.285	0.407	0.516	6.099	6.759	7.209	9.008	4.379	1.982	0.059	0.063	1.002	3.124	1.186	2.096	0.472	0.157	0.222	2.784
2251	chr13	27535683	27547049	+	0	NA	Intergenic	Intergenic	-158304	NR_046547	100874070	Hs.524923	NR_046547		USP12-AS1	-	USP12 antisense RNA 1	ncRNA	1.279	0.610	3.440	1.825	0.408	0.218	0.225	0.086	0.057	0.248	0.131	1.628	0.678	0.048	0.068	0.890	1.663	0.362	nan	4.777	4.622	2.165	0.423	0.219	0.295	0.830	1.143	1.954	2.301	8.056	10.061	1.059	1.205	0.128	0.128	0.239	0.435	1.914	0.933	0.147	0.552		0.803	0.225	1.628	0.662	2.619	0.898	0.087
1086	chr10	29225225	29232423	+	0	NA	Intergenic	Intergenic	93487	NM_001278522	283080		NM_001278522		C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding	1.247	1.662	0.835	2.658	6.443	3.158	0.725	0.187	0.156	2.309	0.800	5.881	6.870	0.110	0.115	0.255	0.134	7.404	10.490	5.335	4.388	7.445	7.301	0.295	0.334	0.148	0.160	4.825	9.313	0.469	0.290	0.079	0.385	4.004	4.852	0.276	0.740	2.525	1.148	0.302	0.799	1.072	1.489	0.725	5.881		2.098	0.636	0.018
8304	chr9	133530975	133548608	+	0	NA	promoter-TSS (NM_021619)	promoter-TSS (NM_021619)	-190	NM_021619	59335	Hs.495311	NM_021619	ENSG00000130711	PRDM12	HSAN8|PFM9	PR/SET domain 12	protein-coding	nan	0.533	0.726	0.286	0.252	0.181	0.349	0.091	0.091	0.090	0.060	0.299	0.640	0.088	0.062	0.182	0.123	0.207	0.244	14.275	12.127	nan	0.176	0.181	0.167	0.757	0.901	0.368	0.450	1.073	0.630	0.141	0.123	0.141	0.346	0.263	0.364	0.360	0.345	0.159	0.207	0.043	0.091	0.349	0.299	0.520	0.984	0.028	0.042
5854	chr4	25906448	25931656	+	0	NA	intron (NM_001145432, intron 1 of 2)	intron (NM_001145432, intron 1 of 2)	3238	NM_001145432	389203	Hs.479386	NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7	small integral membrane protein 20	protein-coding	1.277	0.787	nan	1.300	1.069	0.554	0.671	0.808	0.133	0.672	0.357	0.924	1.109	0.287	0.058	0.428	0.375	0.908	1.147	0.638	0.653	4.395	1.047	1.344	1.391	0.882	1.199	1.104	1.266	2.679	2.768	0.176	0.319	1.454	1.902	1.211	2.153	nan	1.257	0.484	0.610	0.328	0.344	0.671	0.924	0.180	0.459	0.090	0.618
7532	chr7	148821938	148826095	+	0	NA	promoter-TSS (NM_001001661)	promoter-TSS (NM_001001661)	508	NM_020781	57541	Hs.632032	NM_020781	ENSG00000197024	ZNF398	P51|P71|ZER6	zinc finger protein 398	protein-coding	7.056	2.209	4.955	5.285	6.362	2.471	5.769	4.952	1.045	2.632	1.380	10.719	11.629	9.177	0.324	7.411	8.967	6.955	10.760	9.134	7.535	8.933	3.386	11.506	12.225	5.350	6.408	5.908	7.801	5.965	6.647	4.701	9.221	6.305	5.310	5.099	7.139	5.468	nan	5.396	7.892	1.205	2.687	5.769	10.719	1.818	3.909	2.705	2.084
564	chr1	154940524	154951200	+	0	NA	intron (NM_001130041, intron 1 of 12)	AluSq2|SINE|Alu	1097	NM_001130041	6464	Hs.433795	NM_003029	ENSG00000160691	SHC1	SHC|SHCA	SHC adaptor protein 1	protein-coding	nan	nan	2.730	2.447	2.477	1.219	3.348	6.511	1.092	1.792	0.823	2.443	12.108	5.095	0.185	4.678	6.236	5.568	9.362	5.117	nan	3.843	1.956	6.865	6.954	3.551	4.269	7.162	8.802	2.650	2.093	5.458	7.082	2.566	3.428	4.237	6.793	1.959	1.003	2.263	4.500	0.587	3.891	3.348	2.443	0.673	5.530	4.394	1.988
5839	chr4	15470251	15498866	+	0	NA	TTS (NM_001164720)	TTS (NM_001164720)	13069	NM_020785	57545	Hs.590928	NM_020785	ENSG00000048342	CC2D2A	JBTS9|MKS6	coiled-coil and C2 domain containing 2A	protein-coding	nan	nan	nan	0.256	0.131	0.073	0.405	1.670	0.190	0.203	0.184	0.205	0.509	0.049	0.075	0.427	0.259	0.613	0.561	0.486	0.511	1.004	0.442	0.546	0.499	1.101	1.474	0.371	0.435	1.594	1.351	0.360	0.419	0.214	0.262	1.170	4.604	nan	0.633	0.096	0.139	0.029	0.116	0.405	0.205	0.038	0.110	0.108	1.755
3070	chr16	18798763	18816612	+	0	NA	intron (NM_015161, intron 3 of 5)	intron (NM_015161, intron 3 of 5)	5005	NM_001313858	23204	Hs.634882	NM_015161	ENSG00000170540	ARL6IP1	AIP1|ARL6IP|ARMER|SPG61	ADP ribosylation factor like GTPase 6 interacting protein 1	protein-coding	2.382	1.496	nan	2.203	2.087	1.185	1.388	0.808	0.136	1.016	0.598	2.258	5.174	1.714	0.134	1.879	2.270	1.818	2.383	3.425	3.147	4.386	1.581	4.107	3.941	2.086	2.724	6.133	8.301	nan	3.468	1.658	2.739	2.020	2.803	2.447	3.320	1.941	0.973	1.584	0.919	0.477	1.065	1.388	2.258	0.556	0.904	0.568	1.448
4488	chr2	127874925	127893869	+	0	NA	Intergenic	MER21C|LTR|ERVL	-19494	NM_139344	274	Hs.193163	NM_004305	ENSG00000136717	BIN1	AMPH2|AMPHL|SH3P9	bridging integrator 1	protein-coding	1.182	nan	nan	0.065	0.140	0.084	0.129	0.086	0.052	0.099	0.110	0.057	0.332	0.086	0.067	0.428	0.317	0.187	0.208	0.238	0.279	0.230	0.122	0.295	0.361	0.153	0.297	0.512	0.529	0.676	0.699	0.187	0.210	0.037	0.040	1.298	4.730	0.286	0.305	0.049	0.133	0.020	0.029	0.129	0.057	0.230	0.061	0.061	0.986
6599	chr6	6878180	6888591	+	0	NA	Intergenic	L2c|LINE|L2	-224445	NM_001168344	6239	Hs.298248	NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding	0.938	0.839	1.489	0.411	0.339	0.265	0.234	0.102	0.096	0.136	0.102	0.934	0.429	0.083	0.110	1.264	2.249	0.452	0.433	0.467	0.531	0.885	0.470	0.623	0.534	0.274	0.388	1.701	1.437	0.489	0.222	0.690	0.820	0.177	0.239	0.394	0.616	0.507	0.540	0.086	0.630	0.018	0.200	0.234	0.934	0.038	4.478	0.493	0.153
7359	chr7	81995868	82016174	+	0	NA	intron (NM_000722, intron 1 of 38)	intron (NM_000722, intron 1 of 38)	67101	NM_000722	781	Hs.282151	NM_000722	ENSG00000153956	CACNA2D1	CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein-coding	1.284	1.536	0.928	0.406	0.933	0.457	1.521	0.229	0.134	0.876	0.564	0.812	1.018	0.197	0.172	0.676	0.903	0.591	0.370	1.547	1.748	1.861	0.758	0.154	0.194	1.997	2.205	0.606	0.836	2.027	1.608	0.246	0.432	1.944	3.402	0.953	nan	0.637	0.562	6.212	0.140	0.712	0.242	1.521	0.812	0.394	0.075	0.093	0.357
6294	chr5	67533583	67567743	+	0	NA	intron (NM_181523, intron 2 of 15)	(T)n|Simple_repeat|Simple_repeat	-33589	NM_181524	5295	Hs.132225	NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.862	1.439	0.888	0.245	0.340	0.206	0.423	1.452	0.183	0.115	0.090	0.103	0.338	0.075	0.127	0.239	0.264	0.609	0.897	0.356	0.464	0.886	0.249	0.206	0.198	2.062	2.716	0.527	0.470	0.416	0.275	0.174	0.280	2.454	4.542	0.371	1.038	0.550	0.426	0.315	0.185	0.858	0.062	0.423	0.103	0.003	0.053	0.058	0.203
2850	chr15	40329940	40402425	+	0	NA	Intergenic	LTR12C|LTR|ERV1	32105	NM_001003942	90427	Hs.591104	NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding	1.359	1.112	nan	1.453	0.914	0.512	2.643	1.022	0.204	1.608	0.863	3.781	4.047	0.325	0.085	1.993	2.748	2.723	6.365	2.938	3.058	2.041	0.696	1.427	1.526	1.111	nan	4.601	4.763	1.613	1.311	2.241	3.412	1.136	1.343	0.824	1.719	2.397	1.140	3.678	2.251	0.323	1.108	2.643	3.781	0.556	1.293	2.734	0.450
1967	chr12	56508488	56514201	+	0	NA	promoter-TSS (NM_001303124)	promoter-TSS (NM_001303124)	-660	NM_001303124	84872	Hs.632706	NM_032786	ENSG00000135482	ZC3H10	ZC3HDC10	zinc finger CCCH-type containing 10	protein-coding	nan	4.273	3.179	5.928	5.609	3.317	4.002	2.387	0.423	3.033	1.538	5.729	11.563	4.141	0.178	nan	7.753	7.920	11.040	9.455	nan	13.543	7.650	13.160	14.282	6.544	nan	12.057	nan	6.764	8.476	2.972	5.608	11.095	11.346	6.139	7.875	6.367	2.959	2.202	3.978	1.871	1.527	4.002	5.729	1.567	3.677	2.015	2.352
657	chr1	170630823	170648095	+	0	NA	intron (NM_006902, intron 1 of 4)	intron (NM_006902, intron 1 of 4)	6146	NM_022716	5396	Hs.283416	NM_006902	ENSG00000116132	PRRX1	AGOTC|PHOX1|PMX1|PRX-1|PRX1	paired related homeobox 1	protein-coding	nan	nan	nan	0.195	0.231	0.087	0.821	5.155	0.476	0.137	0.211	0.076	1.449	0.056	0.104	0.403	0.292	0.942	1.185	nan	0.453	0.089	0.066	0.083	0.100	5.660	7.796	0.319	0.324	1.209	1.213	0.542	0.867	0.073	0.076	0.362	nan	0.263	0.392	0.032	0.320	0.016	0.018	0.821	0.076	0.006	0.089	0.125	0.298
7611	chr8	20358965	20374808	+	0	NA	Intergenic	Intergenic	233602	NR_047509	100874051	Hs.385799	NR_047509	ENSG00000253733	LZTS1-AS1	-	LZTS1 antisense RNA 1	ncRNA	nan	0.649	nan	0.027	0.249	0.224	0.176	0.033	0.102	0.099	0.072	0.024	0.110	0.045	0.108	0.591	0.640	0.127	0.169	nan	0.483	nan	0.316	0.096	0.122	0.194	0.322	0.220	0.231	0.450	0.186	0.150	0.176	0.170	0.246	0.354	0.530	nan	nan	0.063	0.051	0.030	0.035	0.176	0.024	0.043	0.032	0.025	0.206
5616	chr3	156331480	156349511	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	-51710	NM_015508	25976	Hs.744050	NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding	nan	1.260	0.737	1.105	0.891	0.426	0.693	0.297	0.090	0.397	0.312	0.529	0.597	0.103	0.087	0.309	0.265	0.392	1.084	0.469	0.655	4.177	0.621	0.296	0.285	0.281	nan	1.556	1.543	0.605	0.409	0.156	0.242	1.029	1.951	0.261	0.416	1.208	0.871	0.259	0.502	0.080	0.160	0.693	0.529	0.299	0.317	0.027	0.127
503	chr1	146640047	146647264	+	0	NA	exon (NM_005399, exon 2 of 8)	exon (NM_005399, exon 2 of 8)	513	NR_103871	5565	Hs.50732	NM_005399	ENSG00000131791	PRKAB2	-	protein kinase AMP-activated non-catalytic subunit beta 2	protein-coding	3.502	nan	3.229	1.914	2.347	1.110	0.865	1.870	0.490	3.300	1.420	1.127	11.497	2.560	0.137	4.081	5.198	5.721	4.717	4.837	3.998	4.583	1.101	6.551	6.497	2.310	3.010	3.508	4.960	4.550	5.086	10.129	13.919	3.136	3.323	2.917	5.382	2.391	1.248	2.275	3.378	0.458	0.516	0.865	1.127	0.603	3.908	5.655	1.231
5383	chr3	58146208	58153211	+	0	NA	non-coding (NR_135534, exon 2 of 2)	non-coding (NR_135534, exon 2 of 2)	6653	NR_135534	105377105	Hs.613914	NR_135534	ENSG00000244161	FLNB-AS1	-	FLNB antisense RNA 1	ncRNA	1.839	2.066	nan	1.797	0.115	0.056	0.382	0.470	0.252	1.164	0.292	0.171	1.176	0.325	0.055	0.351	0.286	0.332	0.667	0.707	0.838	4.933	1.830	0.255	0.274	0.313	0.656	5.156	5.173	nan	0.311	0.185	0.196	3.042	3.140	0.277	0.564	2.090	1.332	0.373	0.547	0.832	0.266	0.382	0.171	0.568	5.078	0.014	0.081
7811	chr8	97684742	97707285	+	0	NA	intron (NM_016134, intron 1 of 7)	L1MA4|LINE|L1	38558	NM_016134	10404	Hs.156178	NM_016134	ENSG00000104324	CPQ	LDP|PGCP	carboxypeptidase Q	protein-coding	6.965	4.066	6.766	0.145	0.262	0.208	0.085	0.146	0.114	0.028	0.102	0.128	0.424	0.039	0.117	0.252	0.181	0.187	nan	0.345	0.422	0.293	0.117	0.195	0.183	0.148	0.300	0.647	0.659	0.419	0.167	0.102	0.195	0.085	0.120	4.185	6.601	0.181	0.264	0.044	0.109	0.042	0.021	0.085	0.128	0.008	0.013	0.044	1.348
1483	chr11	67270994	67276870	+	0	NA	TTS (NR_073484)	TTS (NR_073484)	-1089	NM_004910	9600	Hs.372295	NM_004910	ENSG00000110697	PITPNM1	DRES9|NIR2|PITPNM|RDGB|RDGB1|RDGBA|RDGBA1|Rd9	phosphatidylinositol transfer protein membrane associated 1	protein-coding	nan	4.395	2.435	4.482	2.500	1.585	2.336	1.538	0.163	1.014	0.591	2.419	10.526	4.042	0.068	2.382	4.460	3.096	5.656	5.693	4.763	9.867	6.873	3.919	4.143	1.778	2.672	6.170	10.946	1.947	1.686	2.473	3.978	4.689	4.543	2.878	4.465	1.375	0.950	2.723	3.272	1.552	1.919	2.336	2.419	0.752	4.966	1.193	0.915
5769	chr3	190032056	190047785	+	0	NA	exon (NM_021101, exon 1 of 4)	exon (NM_021101, exon 1 of 4)	315	NM_021101	9076	Hs.439060	NM_021101	ENSG00000163347	CLDN1	CLD1|ILVASC|SEMP1	claudin 1	protein-coding	0.812	1.298	0.539	0.156	0.279	0.201	0.167	0.627	0.133	0.167	0.137	0.038	4.651	0.301	0.085	0.323	0.244	9.145	7.131	0.441	0.458	2.406	0.623	0.362	0.428	0.214	0.317	0.758	1.039	0.674	0.480	0.267	0.564	0.070	0.084	0.181	0.372	0.315	0.407	0.312	0.492	0.018	0.060	0.167	0.038	0.018	0.091	0.239	0.086
4069	chr19	41219743	41225933	+	0	NA	promoter-TSS (NM_024876)	promoter-TSS (NM_024876)	-48	NM_024876	79934	Hs.130712	NM_024876	ENSG00000123815	COQ8B	ADCK4|NPHS9	coenzyme Q8B	protein-coding	5.857	4.931	6.340	2.454	2.331	1.661	4.072	2.638	0.214	1.550	0.760	3.295	22.518	7.720	0.173	2.891	4.082	5.692	10.680	5.247	4.343	8.931	3.439	14.375	15.467	4.126	5.760	7.199	14.686	4.337	4.849	3.163	5.219	4.590	4.483	4.622	6.934	3.608	1.998	4.028	4.214	0.852	1.249	4.072	3.295	2.229	4.427	3.378	2.361
1996	chr12	64424368	64438441	+	0	NA	intron (NM_020762, intron 4 of 21)	intron (NM_020762, intron 4 of 21)	184672	NM_001300940	144577	Hs.444671	NM_152440	ENSG00000174206	C12orf66	-	chromosome 12 open reading frame 66	protein-coding	0.851	1.022	1.214	2.689	3.418	1.751	0.302	0.345	0.150	1.574	0.960	2.042	1.244	0.130	0.068	4.043	3.022	2.836	3.476	1.736	nan	7.995	3.210	4.625	4.780	0.583	0.864	5.632	5.010	0.410	0.210	1.125	1.991	2.993	4.067	0.222	0.330	4.002	1.940	0.089	0.658	0.574	0.303	0.302	2.042	0.014	1.577	1.685	0.096
4695	chr2	210366006	210379098	+	0	NA	intron (NM_001039538, intron 2 of 14)	intron (NM_001039538, intron 2 of 14)	-71851	NM_031847	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding	nan	1.017	nan	0.375	0.339	0.252	0.388	0.401	0.202	0.337	0.291	0.724	0.482	0.431	0.111	0.215	0.263	0.247	0.356	0.318	0.419	1.334	0.580	0.529	0.525	3.345	3.631	0.530	nan	0.623	0.263	0.218	0.267	0.880	1.379	0.406	0.903	0.426	0.320	0.123	0.102	0.273	0.479	0.388	0.724	0.052	0.132	0.068	0.216
5781	chr3	192231064	192234533	+	0	NA	promoter-TSS (NR_046598)	promoter-TSS (NR_046598)	-13	NR_046598	100873988	Hs.628012	NR_046598		FGF12-AS3	-	FGF12 antisense RNA 3	ncRNA	nan	2.698	0.665	4.439	4.929	2.842	0.963	0.088	0.236	2.849	1.286	3.240	20.444	0.063	0.101	4.971	5.507	0.080	0.129	6.344	3.746	8.374	2.302	1.122	1.377	0.113	0.280	7.436	12.354	2.610	3.215	1.546	2.772	0.348	0.305	1.150	1.376	2.858	1.930	0.033	2.922	0.026	8.107	0.963	3.240	0.478	1.229	0.830	0.222
6143	chr5	3590740	3599179	+	0	NA	Intergenic	CpG	-1209	NM_024337	79192	Hs.424156	NM_024337	ENSG00000170549	IRX1	IRX-5|IRXA1	iroquois homeobox 1	protein-coding	0.244	0.459	0.713	0.135	0.156	0.115	1.967	0.116	0.132	0.145	0.127	1.165	1.219	0.076	0.075	2.630	2.091	0.416	nan	6.929	5.950	0.051	0.028	0.033	0.048	0.065	0.189	nan	0.109	nan	11.801	1.821	5.188	0.029	0.071	0.067	0.044	0.102	nan	0.006	0.182	0.023	0.609	1.967	1.165	0.931	0.049	1.499	0.044
5285	chr22	42801794	42841351	+	0	NA	intron (NM_145912, intron 1 of 5)	C-rich|Low_complexity|Low_complexity	6829	NM_001318323	150372	Hs.436677	NM_145912	ENSG00000235568	NFAM1	CNAIP	NFAT activating protein with ITAM motif 1	protein-coding	0.955	nan	0.750	0.273	0.652	0.353	0.935	0.114	0.089	0.149	0.158	0.639	2.525	0.153	0.101	0.560	0.796	0.413	0.752	1.284	1.138	1.011	0.348	0.304	0.347	0.959	nan	0.778	1.270	nan	0.736	0.456	0.625	1.636	1.756	0.370	0.642	1.039	0.630	2.247	0.885	0.524	0.066	0.935	0.639	1.211	0.507	0.375	0.118
6956	chr6	127586559	127590850	+	0	NA	intron (NM_001242849, intron 1 of 2)	intron (NM_001242849, intron 1 of 2)	721	NM_001242845	81847	Hs.267120	NM_030963	ENSG00000118518	RNF146	-	ring finger protein 146	protein-coding	7.240	3.225	3.691	5.546	2.458	1.013	4.325	3.123	0.446	2.153	0.905	3.419	7.007	4.090	0.136	6.188	8.501	4.238	5.799	7.001	6.267	14.811	6.515	16.905	17.541	2.578	3.127	5.138	8.377	12.486	13.847	3.312	7.696	6.965	5.542	7.928	7.392	2.893	1.757	2.379	3.249	0.753	1.292	4.325	3.419	1.291	2.793	1.385	2.245
3253	chr17	6329277	6360752	+	0	NA	Intergenic	MIR|SINE|MIR	-2721	NM_001195228	54478	Hs.592116	NM_019013	ENSG00000129195	FAM64A	CATS|RCS1	family with sequence similarity 64 member A	protein-coding	1.251	0.792	1.095	0.837	1.610	0.854	1.120	0.185	0.081	0.274	0.113	1.475	1.364	1.106	0.201	2.321	3.596	0.440	0.664	3.205	2.971	2.230	0.880	0.343	0.362	0.788	1.162	2.099	2.338	1.584	1.192	0.394	0.466	0.655	0.513	1.350	3.328	0.519	0.363	0.505	0.743	0.148	0.457	1.120	1.475	0.339	0.385	0.245	1.031
1114	chr10	49792701	49818231	+	0	NA	intron (NR_045675, intron 2 of 10)	intron (NR_045675, intron 2 of 10)	7710	NM_001347737	58504	Hs.655672	NM_021226	ENSG00000128805	ARHGAP22	RhoGAP2|RhoGap22	Rho GTPase activating protein 22	protein-coding	0.691	nan	5.126	0.430	0.660	0.351	0.075	0.092	0.075	0.093	0.094	2.307	2.109	0.068	0.079	0.591	0.867	0.227	0.322	1.253	1.022	2.462	0.443	0.773	0.805	0.202	0.383	1.331	1.488	0.589	0.610	0.177	0.227	0.563	0.684	0.165	0.236	0.502	0.415	1.102	0.219	0.175	0.402	0.075	2.307	0.130	0.020	0.027	0.088
2389	chr13	98888661	98895727	+	0	NA	intron (NM_005766, intron 2 of 26)	intron (NM_005766, intron 2 of 26)	31416	NR_036129	100422881		NR_036129	ENSG00000263399	MIR3170	mir-3170	microRNA 3170	ncRNA	1.434	1.153	0.850	1.106	1.191	0.635	0.524	0.063	0.184	0.464	0.175	1.253	0.847	0.046	0.075	0.969	1.257	0.219	0.389	2.761	2.404	7.565	2.274	0.124	0.164	0.266	0.330	6.146	5.765	0.570	0.375	1.154	1.894	1.963	1.865	0.566	0.533	0.435	0.342	7.662	5.108	0.539	0.977	0.524	1.253	0.262	0.101	1.248	0.164
3657	chr18	8653799	8676344	+	0	NA	Intergenic	L1MB8|LINE|L1	42548	NR_120598	100287082	Hs.439434	NR_120598	ENSG00000265962	GACAT2	MTCL1-AS1|MTCL1AS1	gastric cancer associated transcript 2 (non-protein coding)	ncRNA	1.444	3.763	2.474	5.735	2.971	1.661	1.941	0.179	0.100	1.140	0.605	3.124	nan	0.058	0.133	3.234	4.216	0.496	0.641	7.321	7.466	nan	4.471	2.488	2.649	1.364	nan	5.121	6.404	nan	2.178	0.924	1.685	5.018	4.518	0.277	nan	nan	2.001	7.287	2.895	0.994	1.221	1.941	3.124	0.728	1.005	1.114	0.103
4497	chr2	131588821	131611565	+	0	NA	Intergenic	Intergenic	-74031	NM_015320	50649	Hs.469935	NM_015320	ENSG00000136002	ARHGEF4	ASEF|ASEF1|GEF4|STM6	Rho guanine nucleotide exchange factor 4	protein-coding	nan	0.412	nan	0.034	0.422	0.141	0.521	0.059	0.078	0.040	0.081	0.142	0.898	0.100	0.078	1.127	1.873	0.563	0.757	0.491	0.460	1.353	0.289	0.455	0.490	0.219	0.368	1.345	nan	3.472	4.591	1.315	2.091	0.447	0.448	0.476	0.789	0.143	0.177	0.186	0.948	0.080	0.024	0.521	0.142	1.150	0.085	0.937	0.224
6452	chr5	133767740	133777665	+	0	NA	Intergenic	Intergenic	-1964	NR_105044	102546229		NR_105044		LOC102546229	-	uncharacterized LOC102546229	ncRNA	0.929	3.407	nan	1.151	2.002	1.082	0.442	0.423	0.277	0.397	0.185	1.142	1.623	0.087	0.129	0.923	1.205	1.725	0.859	1.250	1.045	2.080	1.372	0.925	0.925	0.197	0.549	10.403	11.127	0.761	0.542	1.122	1.219	0.317	0.272	0.726	2.118	1.654	1.336	0.493	2.360	0.039	0.135	0.442	1.142	0.058	2.797	0.980	0.550
8019	chr9	3396258	3414310	+	0	NA	intron (NM_001282116, intron 1 of 16)	intron (NM_001282116, intron 1 of 16)	-9688	NM_002919	5991	Hs.136829	NM_002919	ENSG00000080298	RFX3	-	regulatory factor X3	protein-coding	1.008	1.795	0.870	0.258	1.853	1.094	1.518	0.108	0.062	0.408	0.299	0.562	0.314	0.179	0.106	0.983	0.575	1.899	2.264	0.725	0.678	2.928	0.801	0.769	0.630	4.082	4.681	0.258	0.192	0.561	0.242	1.305	2.058	3.300	7.370	0.247	nan	1.247	0.838	0.084	0.270	0.876	1.089	1.518	0.562	0.130	0.046	1.261	0.048
122	chr1	19710681	19788720	+	0	NA	intron (NM_004930, intron 1 of 8)	intron (NM_004930, intron 1 of 8)	61501	NM_001282162	832	Hs.432760	NM_004930	ENSG00000077549	CAPZB	CAPB|CAPPB|CAPZ	capping actin protein of muscle Z-line beta subunit	protein-coding	1.502	1.031	nan	1.195	0.409	0.181	0.610	0.491	0.152	0.149	0.101	0.253	1.513	0.150	0.104	0.435	0.600	0.366	0.707	1.653	1.899	0.645	0.241	0.554	nan	1.128	nan	4.859	4.718	nan	0.855	0.220	0.308	0.236	0.262	0.715	1.584	1.066	0.715	0.577	1.244	0.064	0.094	0.610	0.253	0.325	0.476	0.052	0.409
5783	chr3	192943667	192961508	+	0	NA	Intergenic	L2a|LINE|L2	-6330	NM_020386	57110	Hs.36761	NM_020386	ENSG00000127252	HRASLS	A-C1|H-REV107|HRASLS1|HRSL1|HSD28	HRAS like suppressor	protein-coding	nan	1.436	1.648	0.771	0.674	0.261	0.573	0.147	0.127	0.441	0.348	0.124	nan	0.043	0.069	0.714	0.784	0.948	0.970	2.120	2.050	0.470	0.237	1.836	1.856	0.904	1.244	1.090	1.502	4.878	5.925	0.503	0.816	0.228	0.203	2.764	6.401	1.026	0.840	0.196	1.071	0.112	3.732	0.573	0.124	0.890	0.171	0.384	2.126
878	chr1	222592576	222596718	+	0	NA	Intergenic	MIRb|SINE|MIR	126797	NM_024746	79802	Hs.665660	NM_024746	ENSG00000143512	HHIPL2	KIAA1822L	HHIP like 2	protein-coding	0.976	nan	0.866	0.221	0.282	0.271	0.125	0.115	0.040	0.040	0.112	0.086	0.455	0.052	0.072	3.255	2.133	13.608	1.189	0.394	nan	0.161	0.116	11.062	11.224	0.259	0.274	0.245	0.307	0.286	0.123	0.505	1.109	0.110	0.148	0.124	0.315	0.592	0.619	0.792	0.066		0.058	0.125	0.086		0.041	0.144	0.092
5421	chr3	88658245	88678708	+	0	NA	Intergenic	Intergenic	-469460	NM_001195308	8545	Hs.444818	NM_003663	ENSG00000163320	CGGBP1	CGGBP|p20-CGGBP	CGG triplet repeat binding protein 1	protein-coding	nan	0.634	0.843	0.039	0.097	0.024	0.482	0.025	0.016	0.023	0.117	0.058	0.154	0.031	0.061	0.141	0.123	0.259	0.453	0.262	0.275	0.156	0.083	0.117	0.112	5.895	5.534	0.125	0.111	0.587	0.388	0.089	0.106	0.029	0.057	0.363	0.649	0.328	0.253	0.003	0.056	0.005	0.012	0.482	0.058	0.010	0.029	0.005	0.036
2277	chr13	39607898	39615201	+	0	NA	promoter-TSS (NM_001012754)	promoter-TSS (NM_001012754)	664	NM_025138	80209	Hs.318526	NM_025138	ENSG00000120685	PROSER1	C13orf23	proline and serine rich 1	protein-coding	3.414	2.973	3.784	2.814	1.611	0.978	1.348	1.385	0.110	1.969	0.949	4.815	5.352	2.813	0.145	7.218	7.522	2.406	3.640	10.665	10.096	10.712	4.013	5.741	5.740	3.509	4.392	2.632	4.226	4.382	4.831	4.741	7.911	6.382	6.416	5.302	6.399	2.319	1.370	2.336	2.680	1.128	1.161	1.348	4.815	0.386	1.197	2.695	1.684
2353	chr13	78733086	78737516	+	0	NA	intron (NR_047001, intron 1 of 5)	intron (NR_047001, intron 1 of 5)	106311	NR_047001	100874222	Hs.493062	NR_047001	ENSG00000234377	RNF219-AS1	POU4F1-AS1	RNF219 antisense RNA 1	ncRNA	nan	0.882	0.544	0.099	0.158	0.180	0.461	0.285	0.147	0.073	0.111	0.192	0.698	0.048	0.055	10.382	8.716	3.657	2.435	0.234	0.429	nan	0.081	1.338	1.281	0.167	0.159	0.148	0.181	nan	0.132	13.235	13.868	0.029	0.067	0.262	nan	0.115	0.102	0.025	0.782	0.022	0.160	0.461	0.192		0.116	13.948	0.072
3198	chr16	84673215	84683419	+	0	NA	Intergenic	L1ME4a|LINE|L1	-3800	NM_001303451	79786	Hs.222731	NM_024731	ENSG00000135686	KLHL36	C16orf44	kelch like family member 36	protein-coding	nan	2.045	1.343	2.524	1.061	0.472	2.222	0.441	0.191	0.543	0.112	2.245	3.834	0.351	0.083	0.867	1.324	0.602	0.880	2.515	1.970	2.690	0.775	1.521	1.638	2.468	3.181	7.358	9.832	2.980	4.130	0.509	0.748	1.198	1.115	0.491	0.738	1.985	1.423	1.539	2.600	0.307	0.240	2.222	2.245	1.191	1.233	0.234	0.207
3215	chr16	87942630	87949542	+	0	NA	intron (NM_001739, intron 2 of 6)	MamRep605|Unknown|Unknown	24026	NM_001739	763	Hs.177446	NM_001739	ENSG00000174990	CA5A	CA5|CA5AD|CAV|CAVA|GS1-21A4.1	carbonic anhydrase 5A	protein-coding	nan	0.909	1.686	0.915	4.579	2.422	1.244	0.077	0.046	0.997	0.533	1.990	1.385	0.109	0.079	0.369	0.522	0.253	0.509	3.722	3.012	3.516	2.939	0.508	0.555	0.653	0.952	1.777	1.794	0.883	0.622	0.396	0.420	0.964	1.194	0.327	0.779	3.137	1.627	0.319	0.473	0.042	0.813	1.244	1.990	0.526	6.343	0.071	0.089
5834	chr4	8200558	8240814	+	0	NA	intron (NR_134639, intron 6 of 14)	intron (NR_134639, intron 6 of 14)	19715	NM_018986	54436	Hs.479116	NM_018986	ENSG00000125089	SH3TC1	-	SH3 domain and tetratricopeptide repeats 1	protein-coding	1.083	0.538	nan	0.894	0.254	0.159	0.407	0.123	0.076	0.846	0.528	2.628	0.921	0.062	0.061	0.390	0.455	0.231	0.377	3.358	3.407	nan	0.618	0.655	0.666	0.232	0.326	1.670	2.249	0.652	0.541	0.450	0.594	0.776	0.990	0.120	0.152	nan	1.030	1.642	0.430	0.250	0.098	0.407	2.628	0.209	0.806	0.197	0.052
6687	chr6	27017453	27053668	+	0	NA	Intergenic	AluSx1|SINE|Alu	-47475	NR_026776	100270746	Hs.590428	NR_026776		LOC100270746	-	uncharacterized LOC100270746	ncRNA	0.784	0.769	nan	1.757	0.482	0.257	0.145	0.116	0.071	1.319	0.631	1.656	nan	0.087	0.147	0.971	0.826	0.861	nan	0.625	0.732	nan	3.543	0.523	0.524	0.350	0.519	2.209	2.222	0.385	0.174	0.384	0.564	1.317	1.835	0.293	0.637	2.716	1.234	0.012	0.318	0.161	0.032	0.145	1.656	0.021	0.699	0.117	0.143
2159	chr12	116551625	116573261	+	0	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	24016	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA	nan	nan	0.957	0.311	0.485	0.199	1.025	0.637	0.165	0.441	0.300	0.515	0.539	0.281	0.167	0.430	0.424	0.255	0.424	nan	nan	nan	0.200	0.520	0.529	2.202	2.881	nan	nan	1.112	0.809	0.283	0.445	2.809	4.612	1.048	1.704	nan	0.852	1.406	2.043	0.998	0.124	1.025	0.515	0.081	0.361	0.219	0.442
3059	chr16	14371237	14381046	+	0	NA	Intergenic	Intergenic	-20004	NR_132983	100129781	Hs.190748	NR_132983		MIR193BHG	-	MIR193B host gene	ncRNA	1.101	0.751	nan	0.844	0.769	0.470	0.365	0.371	0.115	0.288	0.174	0.367	2.306	0.288	0.098	0.420	0.757	0.219	0.429	0.843	0.748	8.321	2.366	2.296	2.176	0.443	0.805	0.790	1.007	nan	0.573	0.474	0.822	0.667	0.529	0.555	0.984	0.591	0.733	0.314	0.615	0.117	0.571	0.365	0.367	0.079	0.217	0.352	0.128
6161	chr5	8455648	8466581	+	0	NA	promoter-TSS (NR_039663)	promoter-TSS (NR_039663)	76	NR_039663	100616142		NR_039663	ENSG00000247516	MIR4458	mir-4458	microRNA 4458	ncRNA	0.798	1.021	1.355	3.194	1.221	0.516	0.515	1.701	0.206	1.887	1.030	0.492	2.466	0.786	0.130	0.990	0.864	0.884	nan	0.339	0.464	1.779	0.693	0.137	0.086	1.781	2.161	4.657	5.407	nan	4.440	0.876	1.365	1.964	2.701	0.124	0.186	3.717	nan	0.748	0.927	0.271	0.356	0.515	0.492	0.578	1.801	0.390	0.022
8031	chr9	6407411	6415738	+	0	NA	Intergenic	AluSx1|SINE|Alu	-1577	NM_152896	115426	Hs.493401	NM_152896	ENSG00000147854	UHRF2	NIRF|RNF107|TDRD23|URF2	ubiquitin like with PHD and ring finger domains 2	protein-coding	2.594	4.262	2.576	2.249	2.213	1.172	2.723	0.982	0.232	1.601	0.714	1.852	3.680	0.950	0.127	1.580	1.575	3.065	4.299	4.225	3.716	4.919	2.028	2.618	2.564	5.301	7.373	2.261	3.548	3.165	3.773	1.674	3.369	3.205	3.018	2.795	nan	2.767	2.152	1.365	1.543	0.592	1.414	2.723	1.852	0.376	1.415	0.773	0.426
5243	chr22	32012039	32027446	+	0	NA	exon (NM_014338, exon 4 of 9)	exon (NM_014338, exon 4 of 9)	-2225	NR_106959	102465666		NR_106959	ENSG00000241878	MIR7109	hsa-mir-7109	microRNA 7109	ncRNA	nan	1.105	1.140	1.268	1.587	0.708	1.586	0.373	0.032	0.888	0.449	3.054	1.642	0.292	0.049	1.506	2.180	0.446	nan	3.073	2.796	1.812	0.606	1.116	1.199	0.706	nan	2.177	2.443	0.882	0.884	1.856	2.113	1.338	1.525	0.683	nan	1.464	0.800	2.290	3.481	0.297	0.319	1.586	3.054	0.354	0.676	0.459	0.284
4834	chr20	6540315	6545469	+	0	NA	Intergenic	Intergenic	135513	NR_109953	101929244	Hs.542488	NR_109953	ENSG00000229876	CASC20	-	cancer susceptibility candidate 20 (non-protein coding)	ncRNA	0.694	1.221	0.640	0.185	0.106	0.068	0.224	0.211		0.100	0.113	0.093	0.257		0.074	0.463	0.306	10.516	7.394	0.301	0.315	0.577	0.272	0.483	0.421	0.188	0.392	0.406	0.565	0.443	0.249	0.261	0.284	0.183	0.270	0.220	0.506	0.579	0.590	0.011	0.104	0.019		0.224	0.093	0.018	0.158	0.038	0.024
4725	chr2	220359195	220392617	+	0	NA	Intergenic	Intergenic	-2986	NM_182847	55515	Hs.87469	NM_018674	ENSG00000072182	ASIC4	ACCN4|BNAC4	acid sensing ion channel subunit family member 4	protein-coding	nan	0.871	2.058	0.286	0.467	0.282	0.616	0.363	0.072	0.166	0.105	0.254	nan	0.424	0.110	2.432	3.595	0.373	0.607	0.554	0.551	0.945	0.252	0.531	0.604	2.078	2.730	0.769	nan	2.303	1.923	0.507	0.582	0.313	0.262	2.401	nan	0.415	0.327	0.177	0.162	0.088	0.128	0.616	0.254	0.879	0.310	0.098	4.533
4538	chr2	145178575	145244780	+	0	NA	intron (NM_001171653, intron 2 of 8)	intron (NM_001171653, intron 2 of 8)	-65504	NR_040248	100303491	Hs.560789	NR_040248	ENSG00000238057	ZEB2-AS1	ZEB2-AS|ZEB2AS|ZEB2NAT	ZEB2 antisense RNA 1	ncRNA	1.095	nan	1.066	0.695	1.411	0.695	0.284	0.415	0.076	0.596	0.486	0.499	0.668	0.021	0.086	0.358	0.234	9.085	11.829	0.788	0.716	0.354	0.175	0.233	0.233	1.128	1.346	0.421	0.489	1.145	0.910	0.171	0.516	0.077	0.053	0.599	1.146	0.525	0.432	0.144	0.069	0.026	0.258	0.284	0.499	0.161	0.074	0.236	0.217
4062	chr19	40764978	40793529	+	0	NA	intron (NM_001243027, intron 1 of 13)	AluSg|SINE|Alu	-7995	NM_001330511	208	Hs.631535	NM_001626	ENSG00000105221	AKT2	HIHGHH|PKBB|PKBBETA|PRKBB|RAC-BETA	AKT serine/threonine kinase 2	protein-coding	2.274	1.225	1.978	0.901	0.991	0.567	1.172	0.537	0.119	0.617	0.359	1.039	4.170	0.804	0.143	1.311	1.959	1.074	1.543	1.893	1.948	1.886	1.104	3.185	3.373	1.311	1.849	1.401	2.217	4.511	4.604	1.474	2.495	1.212	1.274	1.280	2.432	1.814	0.964	1.615	2.628	0.264	0.517	1.172	1.039	1.209	0.765	1.011	1.019
6096	chr4	182739844	182765313	+	0	NA	Intergenic	Intergenic	313090	NR_125905	90768	Hs.175465	NR_027107		LOC90768	-	uncharacterized LOC90768	ncRNA	nan	0.691	nan	0.049	0.877	0.507	0.077	0.076	0.082	0.264	0.135	0.122	0.161	2.822	0.130	0.262	0.211	0.830	0.788	0.426	0.462	6.234	1.835	0.200	0.229	0.092	0.131	1.028	0.924	0.434	0.268	0.293	0.411	1.438	1.656	0.090	0.143	1.006	0.530	0.253	0.231	0.324	0.080	0.077	0.122	0.016	0.008	0.241	0.034
7629	chr8	28724239	28764568	+	0	NA	intron (NM_001145159, intron 1 of 15)	MIRb|SINE|MIR	3029	NM_001172562	55756	Hs.162397	NM_018250	ENSG00000104299	INTS9	CPSF2L|INT9|RC74	integrator complex subunit 9	protein-coding	nan	1.143	nan	0.366	0.635	0.382	0.426	0.508	0.107	0.367	0.201	0.532	2.055	0.557	0.111	1.220	1.103	1.092	1.195	nan	1.617	nan	0.459	1.263	1.311	0.622	0.802	0.790	1.015	1.077	1.073	0.387	0.766	0.779	0.914	2.253	4.924	nan	nan	0.310	0.398	0.210	0.130	0.426	0.532	0.109	0.374	0.302	1.410
3591	chr17	77630699	77647037	+	0	NA	Intergenic	L1MB3|LINE|L1	42190	NR_039893	100616170		NR_039893	ENSG00000266665	MIR4739	mir-4739	microRNA 4739	ncRNA	0.932	0.831	0.901	0.080	0.333	0.316	0.424	0.110	0.098	0.114	0.079	0.066	1.649	0.052	0.102	0.366	0.248	0.117	0.133	1.035	0.781	0.102	0.077	0.173	0.160	nan	3.136	0.171	0.215	2.678	3.198	0.189	0.273	0.094	0.104	0.319	0.740	nan	0.467	0.771	3.016	0.017	0.048	0.424	0.066	0.697	0.088	0.072	0.166
1632	chr11	111284943	111319737	+	0	NA	Intergenic	Intergenic	-13429	NR_046085	100132078	Hs.672662	NR_046085	ENSG00000255428	LOC100132078	-	uncharacterized LOC100132078	ncRNA	1.283	1.933	1.070	0.666	3.202	1.722	1.446	0.197	0.076	1.004	0.668	6.982	5.606	0.059	0.106	3.039	nan	3.145	5.923	7.793	9.732	4.140	1.035	0.793	0.750	1.711	nan	3.825	2.532	1.256	0.960	1.482	3.020	2.302	2.330	0.270	0.674	1.187	0.852	5.620	0.213	1.037	1.266	1.446	6.982	0.816	1.462	2.172	0.191
8135	chr9	38410504	38428635	+	0	NA	intron (NM_001007563, intron 1 of 4)	intron (NM_001007563, intron 1 of 4)	4875	NM_001007563	347252	Hs.349705	NM_001007563	ENSG00000137142	IGFBPL1	IGFBP-RP4|IGFBPRP4|bA113O24.1	insulin like growth factor binding protein like 1	protein-coding	2.031	nan	4.767	0.594	0.745	0.327	1.683	0.042	0.062	0.589	0.353	0.561	1.459	0.251	0.080	0.828	1.211	0.572	0.632	1.773	1.638	3.377	1.015	0.260	0.294	2.222	2.778	0.580	0.665	4.985	5.936	0.592	0.826	2.366	1.906	0.390	0.538	3.240	1.872	1.361	0.122	0.831	2.961	1.683	0.561	1.247	0.095	0.311	0.116
3352	chr17	30426732	30455397	+	0	NA	Intergenic	Intergenic	-28409	NM_001033568	55288	Hs.655325	NM_018307	ENSG00000126858	RHOT1	ARHT1|MIRO-1|MIRO1	ras homolog family member T1	protein-coding	nan	1.068	0.937	0.245	1.977	1.033	0.248	0.753	0.203	1.329	0.768	1.384	1.061	0.750	0.248	0.608	0.824	0.417	0.672	nan	1.175	3.034	0.923	0.638	0.676	0.675	1.024	0.754	1.083	nan	0.718	0.362	0.628	1.941	1.433	0.903	1.605	3.328	1.551	0.672	0.243	0.353	0.291	0.248	1.384	0.239	0.190	0.201	0.445
667	chr1	173989479	173994174	+	0	NA	Intergenic	CpG	-29616	NM_001300850	149041	Hs.30258	NM_172071	ENSG00000135870	RC3H1	RNF198|ROQUIN	ring finger and CCCH-type domains 1	protein-coding	nan	5.598	6.785	3.335	3.659	1.406	3.376	3.559	0.550	2.919	1.582	4.431	9.187	3.140	0.213	7.012	7.996	10.958	17.686	nan	7.290	6.989	2.816	9.324	10.537	4.178	5.296	6.741	11.848	4.777	5.090	4.691	11.096	3.284	3.241	10.092	11.867	2.711	1.893	1.847	4.486	0.715	2.124	3.376	4.431	1.035	2.224	2.470	3.525
1280	chr11	2268381	2294721	+	0	NA	Intergenic	Intergenic	10631	NM_005170	430	Hs.152475	NM_005170	ENSG00000183734	ASCL2	ASH2|HASH2|MASH2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	0.406	1.288	0.877	0.073	0.252	0.122	0.131	0.065	0.098	0.082	0.107	0.118	0.792	0.054	0.053	6.525	9.576	4.480	3.016	0.265	0.330	0.506	0.142	8.919	8.986	0.154	0.192	0.204	0.300	0.223	0.102	4.529	8.155	0.243	0.159	0.073	0.093	0.304	0.288	0.541	0.054	0.022	0.015	0.131	0.118	0.015	0.008	5.394	0.028
313	chr1	54354925	54380533	+	0	NA	intron (NM_001324316, intron 1 of 1)	L2a|LINE|L2	7869	NM_213593	1733	Hs.251415	NM_000792	ENSG00000211452	DIO1	5DI|TXDI1	iodothyronine deiodinase 1	protein-coding	1.228	0.877	1.274	0.273	0.371	0.286	0.273	0.688	0.289	0.129	0.130	0.107	1.228	0.249	0.115	0.488	0.479	0.444	0.664	0.924	0.952	0.858	0.392	0.762	0.774	0.773	1.203	0.769	1.264	0.463	0.300	0.280	0.424	0.130	0.150	0.448	nan	1.712	0.851	2.687	0.305	0.030	0.077	0.273	0.107	0.113	0.301	0.081	0.217
4322	chr2	46128397	46171710	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	271010	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding	1.413	nan	1.201	0.472	0.503	0.337	0.402	0.514	0.160	0.409	0.239	0.179	0.609	0.080	0.134	0.291	0.243	0.370	0.699	nan	0.944	3.454	1.312	0.487	0.486	0.706	1.078	1.907	2.336	1.590	1.462	0.198	0.293	0.205	0.205	0.481	nan	nan	0.675	0.598	1.335	0.026	0.131	0.402	0.179	0.115	0.232	0.055	0.443
3023	chr16	2084742	2110766	+	0	NA	promoter-TSS (NM_001318829)	promoter-TSS (NM_001318829)	116	NM_001318193	4913	Hs.66196	NM_002528	ENSG00000065057	NTHL1	FAP3|NTH1|OCTS3|hNTH1	nth like DNA glycosylase 1	protein-coding	1.037	nan	1.237	3.599	1.069	0.437	0.721	0.355	0.183	1.362	0.575	1.826	3.617	0.457	0.107	0.792	1.430	0.315	0.541	2.057	2.000	nan	0.507	2.132	2.127	0.525	nan	4.706	5.140	0.851	0.735	0.723	1.003	0.934	0.747	0.557	0.846	1.848	0.989	4.799	8.649	0.121	0.553	0.721	1.826	0.467	0.939	0.516	0.201
6876	chr6	98483343	98494834	+	0	NA	Intergenic	Intergenic	16681	NR_031579	100302164		NR_031579	ENSG00000238367	MIR2113	hsa-mir-2113	microRNA 2113	ncRNA	nan	0.895	nan	0.385	0.268	0.149	3.253	0.039	0.070	1.037	0.384	1.106	1.391	0.025	0.079	0.456	0.374	0.203	0.203	0.692	0.675	8.411	4.723	0.260	0.214	0.774	nan	0.348	0.428	nan	0.760	0.227	0.267	1.543	1.217	0.685	1.241	0.766	0.461	0.024	0.193	0.192	0.062	3.253	1.106		0.152	0.079	0.238
7136	chr7	3938729	3963005	+	0	NA	intron (NM_152744, intron 5 of 44)	intron (NM_152744, intron 5 of 44)	-218450	NM_001079653	221935	Hs.653013	NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding	0.967	1.138	1.099	0.116	0.426	0.146	0.373	0.102	0.092	0.212	0.171	0.628	nan	0.121	0.126	1.894	1.902	5.209	nan	0.530	0.714	nan	0.284	0.510	0.508	0.113	0.151	nan	1.345	0.228	0.132	0.691	0.915	0.180	0.348	0.122	0.156	0.845	0.655	0.053	0.137	0.032	0.088	0.373	0.628	0.076	0.117	0.363	0.041
7980	chr8	143136560	143148620	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-62933	NR_130468	100616374		NR_130468	ENSG00000265612	MIR4539	-	microRNA 4539	ncRNA	1.077	0.606	nan	0.094	0.675	0.312	0.181	0.087	0.068	0.064	0.086	3.367	1.024	0.054	0.085	0.254	0.205	0.108	0.085	nan	11.605	nan	0.066	0.168	0.215	0.325	0.616	3.337	2.450	0.457	0.258	0.302	0.355	0.140	0.146	0.242	0.297	0.364	0.354	4.887	1.485	0.055	0.047	0.181	3.367		0.033	0.050	0.052
5712	chr3	179039537	179043085	+	0	NA	promoter-TSS (NM_016331)	promoter-TSS (NM_016331)	-240	NM_016331	51193	Hs.632578	NM_016331	ENSG00000121864	ZNF639	ANC-2H01|ANC_2H01|ZASC1	zinc finger protein 639	protein-coding	8.425	4.860	4.651	5.831	5.093	2.430	3.505	5.078	1.044	5.475	3.442	4.083	9.382	3.455	0.160	4.783	6.075	6.327	9.073	10.021	7.966	12.830	4.807	10.166	10.624	6.301	9.245	8.042	12.722	15.901	20.789	3.583	9.905	9.751	7.713	10.726	9.710	4.007	2.320	1.095	4.576	1.934	4.917	3.505	4.083	1.412	2.533	2.234	4.067
7035	chr6	148199688	148231850	+	0	NA	Intergenic	Intergenic	-377643	NM_001346505	23328	Hs.193133	NM_015278	ENSG00000111961	SASH1	SH3D6A|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding	nan	0.736	nan	0.087	0.191	0.060	0.219	0.163	0.079	0.044	0.090	0.063	0.219	0.037	0.129	0.315	0.240	0.415	0.603	0.311	0.342	4.137	1.647	0.223	0.221	0.169	0.275	0.205	0.187	0.840	0.470	0.156	0.272	0.106	0.123	0.327	0.393	0.337	0.291	0.024	0.113	0.032	0.022	0.219	0.063	0.033	0.028	0.043	0.185
6600	chr6	6926520	6948230	+	0	NA	Intergenic	AluSz|SINE|Alu	-170455	NM_001168344	6239	Hs.298248	NM_002955	ENSG00000124782	RREB1	FINB|HNT|LZ321|RREB-1|Zep-1	ras responsive element binding protein 1	protein-coding	1.059	1.207	0.858	0.600	0.459	0.245	0.353	0.101	0.090	0.260	0.225	5.755	0.448	0.040	0.095	1.626	1.931	0.241	0.392	1.935	1.933	1.152	0.697	0.416	0.485	0.249	0.428	0.947	0.744	1.024	0.740	0.261	0.456	0.198	0.247	0.850	1.179	1.264	0.806	0.523	0.614	0.021	1.619	0.353	5.755	0.050	0.743	0.109	0.529
3077	chr16	19392480	19410843	+	0	NA	Intergenic	LOR1b|LTR|ERV1	-20200	NM_001308161	79838	Hs.115838	NM_024780	ENSG00000103534	TMC5	-	transmembrane channel like 5	protein-coding	0.750	2.124	nan	2.011	0.889	0.531	0.289	0.066	0.089	0.494	0.148	0.715	1.341	0.026	0.083	0.268	0.155	0.422	1.278	0.449	0.539	2.644	0.669	0.143	0.135	0.133	0.250	11.990	13.450	nan	0.172	0.155	0.238	0.581	0.812	0.358	0.453	0.469	0.499	1.866	0.131	0.083	0.111	0.289	0.715	0.075	0.138	0.054	0.128
3305	chr17	17368296	17401231	+	0	NA	intron (NM_018019, intron 1 of 1)	L1MC4a|LINE|L1	4463	NM_018019	55090	Hs.244595	NM_018019	ENSG00000141026	MED9	MED25	mediator complex subunit 9	protein-coding	1.964	1.336	1.673	1.123	1.080	0.633	0.618	0.247	0.089	0.304	0.215	1.459	1.178	0.287	0.079	0.981	1.373	1.216	nan	1.595	1.843	2.205	0.977	0.709	0.682	1.351	1.910	2.015	2.642	nan	5.006	0.512	0.685	0.492	0.505	1.837	4.308	1.000	0.564	0.468	0.728	0.072	0.184	0.618	1.459	0.450	2.568	0.272	1.680
3433	chr17	45958341	45975269	+	0	NA	Intergenic	AluJo|SINE|Alu	6377	NR_135480	102724532	Hs.729067	NR_135480	ENSG00000264920	LOC102724532	-	uncharacterized LOC102724532	ncRNA	1.671	1.748	nan	1.810	2.395	1.130	1.105	0.983	0.267	0.788	0.413	1.518	3.266	1.178	0.119	1.738	1.955	1.898	2.817	2.421	nan	2.485	1.370	3.826	4.171	0.989	1.567	3.482	nan	2.797	2.388	1.417	2.135	1.667	2.097	1.926	2.442	2.168	0.943	3.883	1.083	0.377	0.739	1.105	1.518	0.559	0.904	0.542	0.681
6607	chr6	9500934	9506871	+	0	NA	Intergenic	Intergenic	851460	NR_004855	728655	Hs.214343	NR_004855	ENSG00000251164	HULC	HCCAT1|LINC00078|NCRNA00078	hepatocellular carcinoma up-regulated long non-coding RNA	ncRNA	0.762	0.978	0.847	1.607	1.063	0.566	0.283	0.112	0.119	1.037	0.572	7.642	0.436	0.018	0.107	0.523	0.456	0.616	1.975	3.270	4.056	6.911	2.944	0.237	0.166	0.117	0.227	0.145	0.165	0.265	0.115	0.107	0.276	1.438	1.558	0.232	0.427	2.090	1.047	0.215	1.035	0.257	0.293	0.283	7.642	0.048	0.154	0.034	0.041
5021	chr20	58245224	58259657	+	0	NA	intron (NM_001199506, intron 1 of 12)	intron (NM_001199506, intron 1 of 12)	724	NM_001199506	116154	Hs.473218	NM_080672	ENSG00000087495	PHACTR3	C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ	phosphatase and actin regulator 3	protein-coding	0.466	0.620	0.426	0.068	0.167	0.101	0.089	0.157	0.045	0.043	0.052	0.075	0.199	0.054	0.082	0.542	nan	0.081	0.115	0.421	0.436	0.165	0.070	0.166	0.183	4.131	4.831	0.135	0.178	0.569	0.427	0.165	0.246	0.040	0.034	0.107	0.168	0.211	0.404	0.172	0.074		0.039	0.089	0.075	0.708	0.028	0.042	0.026
8025	chr9	4222139	4247475	+	0	NA	intron (NM_001042413, intron 2 of 10)	MIRc|SINE|MIR	65228	NM_001042413	169792	Hs.162125	NM_152629	ENSG00000107249	GLIS3	NDH|ZNF515	GLIS family zinc finger 3	protein-coding	0.645	1.987	0.663	0.136	0.364	0.159	0.310	0.576	0.133	0.161	0.154	0.114	0.519	0.128	0.112	0.213	0.144	2.404	7.237	0.313	0.397	0.165	0.073	0.288	0.241	0.721	1.177	0.253	0.267	0.421	0.179	0.159	0.280	0.104	0.145	0.095	nan	0.825	0.959	0.039	0.087	0.011	0.046	0.310	0.114	0.050	0.072	0.035	0.025
7197	chr7	21400358	21411626	+	0	NA	Intergenic	Intergenic	-61660	NM_001326543	6671	Hs.88013	NM_003112	ENSG00000105866	SP4	HF1B|SPR-1	Sp4 transcription factor	protein-coding	0.920	1.317	1.161	1.999	1.333	0.725	0.092	0.109	0.128	0.975	0.495	0.870	2.629	0.204	0.121	0.633	0.400	0.882	nan	0.453	0.549	7.561	3.693	0.273	0.213	0.181	0.375	2.445	3.751	0.332	0.139	0.259	0.439	1.111	2.071	0.203	nan	1.627	0.922	0.149	0.125	0.085	0.028	0.092	0.870	0.017	0.907	0.068	0.033
7182	chr7	16914163	16931618	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-1277	NM_176813	155465	Hs.100686	NM_176813	ENSG00000173467	AGR3	AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3	anterior gradient 3, protein disulphide isomerase family member	protein-coding	nan	1.387	nan	0.136	0.397	0.243	0.162	0.134	0.055	2.512	1.707	0.459	0.396	0.050	0.197	nan	0.268	0.309	0.500	0.880	1.287	1.520	1.246	0.520	0.464	0.847	1.186	0.399	0.477	0.364	0.200	0.159	0.292	4.776	4.543	0.412	0.851	3.118	1.440	0.032	0.124	1.769	0.094	0.162	0.459	0.039	0.177	0.054	0.248
4267	chr2	26463543	26476657	+	0	NA	intron (NM_000183, intron 1 of 15)	(CCCTA)n|Simple_repeat|Simple_repeat	2484	NM_001281512	3032	Hs.515848	NM_000183	ENSG00000138029	HADHB	ECHB|MSTP029|MTPB|TP-BETA	hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit	protein-coding	1.751	1.105	1.550	1.468	1.594	0.710	0.953	0.834	0.098	1.242	0.702	1.507	7.452	1.762	0.153	2.379	2.512	1.622	2.523	2.206	2.726	2.587	1.257	7.592	8.347	1.918	2.466	3.076	nan	2.629	2.135	1.761	3.129	1.061	1.227	2.580	3.916	1.275	0.895	1.311	1.347	0.121	0.813	0.953	1.507	0.502	1.062	0.910	1.089
7055	chr6	154759815	154836055	+	0	NA	intron (NM_173515, intron 1 of 12)	Tigger15a|DNA|TcMar-Tigger	33818	NM_173515	154043	Hs.16064	NM_173515	ENSG00000153721	CNKSR3	MAGI1	CNKSR family member 3	protein-coding	nan	1.646	1.054	2.433	2.105	1.124	0.313	0.910	0.191	1.845	1.128	3.573	4.060	0.208	0.115	1.018	1.223	2.709	5.130	2.588	nan	4.177	2.151	1.653	1.660	0.092	0.170	4.905	4.986	0.541	0.331	0.595	1.015	0.688	0.616	0.228	nan	1.794	0.763	0.634	0.544	0.135	0.150	0.313	3.573	0.079	1.776	0.577	0.062
7323	chr7	73180915	73186265	+	0	NA	3' UTR (NM_001306, exon 1 of 1)	3' UTR (NM_001306, exon 1 of 1)	1010	NM_001306	1365	Hs.647023	NM_001306	ENSG00000165215	CLDN3	C7orf1|CPE-R2|CPETR2|HRVP1|RVP1	claudin 3	protein-coding	nan	2.516	0.922	3.844	4.735	2.114	2.118	0.114	0.103	4.070	1.786	7.541	5.588	0.439	0.128	4.725	6.743	1.782	nan	6.268	4.950	6.138	2.771	0.338	0.271	0.159	nan	6.664	10.144	1.418	1.581	2.809	5.270	2.935	2.235	0.150	0.681	3.192	1.676	6.186	10.698	0.499	0.933	2.118	7.541	0.273	0.857	2.429	0.045
3715	chr18	30419987	30429524	+	0	NA	Intergenic	Intergenic	-71781	NM_020805	57565	Hs.446164	NM_020805	ENSG00000197705	KLHL14	-	kelch like family member 14	protein-coding	nan	0.942	0.876	0.185	0.241	0.050	0.319	0.039	0.033	0.067	0.068	0.237	0.295	0.034	0.033	0.449	0.379	5.929	1.136	0.326	0.560	0.274	0.201	0.101	0.098	0.151	0.227	nan	0.446	0.451	0.216	0.210	0.390	0.675	0.770	0.493	0.845	1.036	0.803	0.029	0.074	0.170	0.066	0.319	0.237		0.032	0.084	0.141
1495	chr11	69508905	69522773	+	0	NA	intron (NM_005117, intron 2 of 2)	intron (NM_005117, intron 2 of 2)	3267	NM_005117	9965	Hs.249200	NM_005117	ENSG00000162344	FGF19	-	fibroblast growth factor 19	protein-coding	nan	0.704	0.801	0.475	0.313	0.247	1.335	0.076	0.069	0.056	0.066	0.067	0.812	0.086	0.125	0.458	0.246	0.208	0.409	0.729	0.533	2.270	0.253	0.697	0.712	0.602	0.820	1.922	1.596	0.692	0.612	0.206	0.297	1.233	1.142	0.080	0.156	0.966	0.615	0.077	0.052	0.173	0.040	1.335	0.067	0.326	3.494	0.036	0.009
3187	chr16	80061030	80082692	+	0	NA	Intergenic	MIRb|SINE|MIR	242715	NR_104661	101928248	Hs.659802	NR_104660	ENSG00000260876	LINC01229	-	long intergenic non-protein coding RNA 1229	ncRNA	nan	1.707	0.546	0.339	0.461	0.237	0.171	0.037	0.122	0.029	0.054	0.078	1.401	0.010	0.088	0.259	0.176	0.190	0.492	0.334	0.334	0.098	0.056	0.278	0.342	0.074	0.144	0.778	1.362	0.389	0.182	0.088	0.111	0.052	0.058	0.060	0.134	0.220	0.267	3.550	1.012	0.022	0.153	0.171	0.078		0.207	0.028	0.023
5055	chr20	62839953	62857404	+	0	NA	intron (NM_004535, intron 11 of 22)	intron (NM_004535, intron 11 of 22)	-38370	NM_018257	55251	Hs.744845	NM_018257	ENSG00000203880	PCMTD2	C20orf36	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding	0.906	0.968	0.804	0.201	0.295	0.165	0.536	0.111	0.116	0.261	0.118	0.214	0.574	0.102	0.130	0.883	nan	0.168	0.227	0.621	0.746	0.530	0.311	0.629	0.639	0.375	0.624	0.366	0.498	0.441	0.308	0.586	0.772	0.057	0.104	0.426	0.733	1.377	0.824	4.779	2.653	0.028	0.124	0.536	0.214	0.050	0.279	0.131	0.108
8178	chr9	85915242	85930150	+	0	NA	intron (NM_001244959, intron 10 of 14)	L1MB7|LINE|L1	24180	NM_001244961	257019	Hs.127535	NM_174938	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding	1.184	0.886	0.988	0.373	0.471	0.194	0.326	0.759	0.065	0.748	0.331	0.404	0.648	0.036	0.067	0.218	0.175	0.174	0.128	0.758	0.918	1.599	0.599	0.139	0.092	1.527	1.814	0.681	0.791	0.172	0.092	0.106	0.238	1.343	1.101	0.267	0.386	3.359	1.603	0.420	0.061	0.373	0.107	0.326	0.404	1.176	0.062	0.014	0.116
2756	chr14	97746891	97752377	+	0	NA	Intergenic	Intergenic	-175519	NR_110165	101929241	Hs.650839	NR_110165	ENSG00000246084	LOC101929241	-	uncharacterized LOC101929241	ncRNA	0.756	0.424	nan	0.114	0.342	0.058	0.093	0.096	0.118	0.173	0.074	0.043	0.391	0.039	0.144	1.339	1.751	3.909	0.233	0.638	0.718	0.059	0.078	20.168	21.581	0.187	0.218	0.370	0.399	0.578	0.285	2.629	3.587	0.038	0.093	0.238	0.260	nan	0.230	0.070	0.161			0.093	0.043	0.141	0.019	3.178	0.045
1919	chr12	40007222	40015899	+	0	NA	intron (NM_005164, intron 1 of 9)	intron (NM_005164, intron 1 of 9)	2283	NM_005164	225	Hs.117852	NM_005164	ENSG00000173208	ABCD2	ABC39|ALDL1|ALDR|ALDRP|hALDR	ATP binding cassette subfamily D member 2	protein-coding	0.929	nan	0.618	0.050	0.218	0.242	0.221	0.761	0.113	0.251	0.314	0.069	2.949	0.460	0.064	0.466	0.440	0.437	0.551	0.409	0.633	0.327	0.091	0.495	0.504	5.534	5.500	0.398	0.364	7.608	8.053	0.133	0.308	0.033	0.081	0.272	0.551	0.727	0.628		0.308		0.101	0.221	0.069	0.057	0.211	0.025	0.101
1938	chr12	50613269	50620676	+	0	NA	promoter-TSS (NM_001113547)	promoter-TSS (NM_001113547)	-484	NM_001113547	51474	Hs.525419	NM_016357	ENSG00000050405	LIMA1	EPLIN|SREBP3	LIM domain and actin binding 1	protein-coding	nan	3.105	1.610	2.113	2.789	1.336	2.128	4.515	0.979	1.712	0.756	1.985	0.583	0.074	0.079	nan	0.391	9.029	6.921	2.199	nan	8.607	3.976	8.012	8.802	1.902	nan	6.704	nan	1.585	1.088	0.512	1.157	1.747	1.927	1.742	5.052	4.233	2.488	2.799	6.454	0.206	0.439	2.128	1.985	0.564	0.983	0.642	0.667
7654	chr8	38642092	38657474	+	0	NA	intron (NM_001330521, intron 2 of 12)	intron (NM_001330521, intron 2 of 12)	5061	NM_006283	6867	Hs.279245	NM_006283	ENSG00000147526	TACC1	Ga55	transforming acidic coiled-coil containing protein 1	protein-coding	1.446	1.671	nan	2.182	0.741	0.437	0.963	0.817	0.105	0.437	0.227	1.629	8.743	0.726	0.125	0.972	0.986	1.612	3.396	5.618	5.903	1.818	0.741	1.229	1.293	1.586	2.094	2.918	2.541	1.150	0.912	0.402	0.777	0.515	0.806	0.598	0.933	2.788	1.665	3.251	1.243	0.082	0.114	0.963	1.629	0.199	0.732	0.495	0.170
5545	chr3	132820981	132861627	+	0	NA	intron (NM_001136469, intron 2 of 5)	intron (NM_001136469, intron 2 of 5)	-2361	NM_001282865	66000	Hs.191616	NM_023943	ENSG00000144868	TMEM108	CT124	transmembrane protein 108	protein-coding	1.051	nan	nan	0.173	3.973	2.162	0.893	0.422	0.115	0.551	0.248	2.065	0.855	0.027	0.075	0.318	0.248	0.587	0.604	1.847	1.965	6.469	3.132	0.570	0.529	1.453	2.061	0.988	1.619	nan	0.451	0.117	0.242	0.783	0.806	0.564	1.207	3.163	1.501	0.452	0.657	0.152	0.272	0.893	2.065	0.194	0.053	0.046	0.245
5277	chr22	40894280	40935889	+	0	NA	intron (NM_001282662, intron 3 of 14)	AluSx|SINE|Alu	-2720	NR_109965	101927257	Hs.662725	NR_109965	ENSG00000232564	LOC101927257	-	uncharacterized LOC101927257	ncRNA	1.051	nan	0.848	0.162	0.315	0.197	0.210	1.592	0.363	0.086	0.079	0.222	0.263	0.135	0.113	0.293	0.318	0.374	0.844	0.379	0.413	0.444	0.213	0.185	0.200	0.734	nan	0.589	0.736	nan	0.417	0.148	0.136	0.153	0.239	0.864	3.153	0.235	0.135	0.049	0.126	0.052	0.240	0.210	0.222	0.078	0.043	0.021	1.315
516	chr1	149215377	149226139	+	0	NA	Intergenic	AluJr|SINE|Alu	-66372	NR_111933	388692	Hs.271249	NM_001013644		LOC388692	-	uncharacterized LOC388692	ncRNA	2.788	nan	3.047	3.404	2.508	1.101	1.316	1.625	0.330	2.652	1.597	1.879	10.348	4.220	0.310	4.916	5.936	4.286	6.174	5.528	4.686	4.085	2.155	4.566	5.227	3.880	4.005	4.615	5.732	2.909	3.030	6.699	9.161	0.404	0.672	3.654	5.687	0.964	0.856	3.020	3.941	0.107	1.024	1.316	1.879	0.692	5.043	4.713	1.554
7229	chr7	29228247	29249313	+	0	NA	non-coding (NR_120522, exon 3 of 3)	non-coding (NR_120522, exon 3 of 3)	1423	NM_001293072	1124	Hs.654611	NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding	2.669	2.704	4.903	2.540	1.673	0.818	0.572	0.148	0.100	2.068	1.257	1.685	5.739	0.056	0.156	3.727	4.465	0.626	nan	1.821	1.504	3.922	1.546	13.187	13.308	0.149	0.250	2.226	2.964	0.378	0.210	4.023	8.281	4.177	4.463	0.244	nan	2.746	1.386	1.197	1.069	1.158	2.282	0.572	1.685	0.214	0.861	4.322	0.083
1813	chr12	8178181	8192934	+	0	NA	5' UTR (NM_018416, exon 1 of 11)	5' UTR (NM_018416, exon 1 of 11)	198	NM_018416	55810	Hs.120844	NM_018416	ENSG00000065970	FOXJ2	FHX	forkhead box J2	protein-coding	2.066	nan	nan	3.402	2.486	1.372	1.750	0.556	0.077	0.964	0.554	1.744	6.717	2.366	0.154	1.342	1.747	2.034	3.444	nan	4.511	4.577	1.536	3.418	3.404	1.827	2.264	1.623	2.029	2.454	2.087	1.256	2.284	1.492	1.783	1.557	nan	1.592	0.830	1.541	2.194	0.304	0.118	1.750	1.744	6.084	0.704	1.423	0.657
2004	chr12	67191340	67219354	+	0	NA	Intergenic	Intergenic	-132422	NM_021150	23426	Hs.505946	NM_021150	ENSG00000155974	GRIP1	GRIP	glutamate receptor interacting protein 1	protein-coding	0.852	1.356	0.733	0.395	1.211	0.581	0.872	0.094	0.057	1.636	0.779	1.144	1.584	0.054	0.086	0.494	0.404	0.326	0.962	1.572	nan	6.924	2.551	0.278	0.276	1.700	2.081	1.764	1.404	1.051	0.842	0.341	0.430	1.305	1.497	0.324	0.623	2.484	1.366	0.214	0.190	0.292	0.691	0.872	1.144	0.122	0.441	0.110	0.082
4754	chr2	233364180	233392028	+	0	NA	Intergenic	Intergenic	-7069	NM_001195129	646960	Hs.570310	NM_001195129	ENSG00000237412	PRSS56	MCOP6	protease, serine 56	protein-coding	1.461	nan	1.256	0.141	0.543	0.264	1.194	0.024	0.035	0.134	0.112	0.112	0.705	0.117	0.090	0.392	0.348	0.269	0.342	0.641	0.450	0.426	0.122	0.687	0.699	0.107	0.277	0.443	nan	0.623	0.594	0.310	0.314	0.112	0.218	1.160	4.554	0.308	0.272	0.186	0.051	0.017	0.031	1.194	0.112	0.090	3.386	0.039	1.009
6128	chr5	1237144	1259435	+	0	NA	Intergenic	Intergenic	22819	NM_182632	348932	Hs.213284	NM_182632	ENSG00000164363	SLC6A18	Xtrp2	solute carrier family 6 member 18	protein-coding	0.469	0.773	1.116	0.243	0.413	0.267	0.322	0.124	0.108	0.310	0.137	0.683	0.634	0.097	0.095	3.275	4.412	0.090	nan	1.614	1.324	1.540	0.538	0.062	0.059	0.209	0.508	nan	0.969	nan	0.542	0.516	0.659	0.303	0.296	0.133	0.124	1.580	nan	0.366	1.903	0.029	0.079	0.322	0.683	0.157	0.198	0.244	0.033
702	chr1	182325983	182340964	+	0	NA	Intergenic	AluJb|SINE|Alu	27066	NM_001033056	2752	Hs.132016	NM_002065	ENSG00000135821	GLUL	GLNS|GS|PIG43|PIG59	glutamate-ammonia ligase	protein-coding	nan	nan	1.340	0.473	0.403	0.256	0.496	0.199	0.118	0.116	0.166	0.161	1.100	0.101	0.099	0.710	0.935	1.433	1.036	0.925	nan	0.196	0.107	nan	6.270	1.901	2.269	0.912	0.974	0.928	0.752	4.213	5.762	0.205	0.162	0.641	nan	1.086	0.837	0.145	0.629	0.039	0.609	0.496	0.161	0.298	0.034	5.869	0.553
2297	chr13	49214241	49236363	+	0	NA	Intergenic	AluSg7|SINE|Alu	-2545	NM_001308469	57105	Hs.253706	NM_020377	ENSG00000152207	CYSLTR2	CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21	cysteinyl leukotriene receptor 2	protein-coding	1.062	nan	nan	0.068	0.259	0.116	0.081	0.101	0.036	0.028	0.114	0.124	0.114	0.034	0.074	0.692	0.519	0.305	0.233	0.489	0.526	nan	0.122	0.153	0.118	0.170	0.252	0.061	0.071	0.866	0.993	0.179	0.244	0.038	0.069	2.944	10.174	0.126	0.150	0.063	0.068	0.013	0.154	0.081	0.124	0.141	0.039	0.049	3.541
6896	chr6	108877956	108884639	+	0	NA	promoter-TSS (NM_001455)	promoter-TSS (NM_001455)	271	NM_201559	2309	Hs.220950	NM_001455	ENSG00000118689	FOXO3	AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A	forkhead box O3	protein-coding	7.744	nan	nan	8.702	5.332	2.542	5.678	3.445	0.364	1.274	0.601	4.429	9.838	4.125	0.181	8.757	9.811	6.262	8.416	7.141	nan	5.715	4.803	15.358	14.811	2.808	3.779	3.417	6.936	nan	8.781	3.791	7.197	7.166	6.950	6.711	6.854	1.892	0.983	2.431	7.299	2.757	3.836	5.678	4.429	1.416	3.645	3.326	3.445
6799	chr6	49503542	49523187	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	-4749	NM_001145652	135398	Hs.722010	NM_153344	ENSG00000197261	C6orf141	-	chromosome 6 open reading frame 141	protein-coding	1.207	1.625	2.716	0.483	1.001	0.359	1.409	0.540	0.164	0.335	0.254	1.001	1.287	0.060	0.113	0.586	0.527	2.092	3.256	0.377	0.353	2.060	0.573	1.031	1.097	0.175	0.317	1.796	nan	0.250	0.095	0.262	0.356	2.997	3.445	1.687	5.067	2.248	1.258	0.108	0.082	0.653	0.040	1.409	1.001	0.044	0.238	0.060	0.884
357	chr1	67893636	67897939	+	0	NA	exon (NM_015640, exon 1 of 8)	exon (NM_015640, exon 1 of 8)	336	NM_001018069	26135	Hs.530412	NM_015640	ENSG00000142864	SERBP1	CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1	SERPINE1 mRNA binding protein 1	protein-coding	8.663	4.381	6.083	5.636	4.886	2.325	3.949	4.242	0.374	3.161	1.118	5.650	12.249	4.675	0.161	6.021	5.939	7.497	11.539	8.823	8.251	10.161	4.346	15.353	15.345	nan	10.163	12.697	16.992	11.452	15.502	3.824	8.984	6.421	6.122	11.915	9.504	4.438	2.641	3.330	5.290	1.075	3.201	3.949	5.650	2.144	3.147	2.583	3.475
4679	chr2	206583799	206607737	+	0	NA	intron (NM_018534, intron 7 of 15)	intron (NM_018534, intron 7 of 15)	48544	NM_201264	8828	Hs.471200	NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding	1.171	nan	1.148	0.208	0.277	0.154	0.593	0.133	0.054	0.072	0.084	0.255	0.566	0.023	0.075	0.272	0.195	0.284	0.589	0.391	0.428	0.371	0.113	0.804	0.732	1.107	1.507	0.731	0.814	1.366	1.371	0.162	0.259	0.065	0.166	1.778	4.467	0.346	0.352	0.752	0.086	0.012	0.540	0.593	0.255	0.422	0.089	0.066	1.330
3236	chr17	1586852	1589290	+	0	NA	intron (NM_006445, intron 1 of 42)	CpG	105	NM_006445	10594	Hs.181368	NM_006445	ENSG00000174231	PRPF8	HPRP8|PRP8|PRPC8|RP13|SNRNP220	pre-mRNA processing factor 8	protein-coding	3.736	2.453	2.570	4.266	7.750	3.885	8.809	1.543	0.794	1.835	1.055	5.958	8.721	2.659	0.082	10.702	9.933	5.989	7.903	8.776	10.069	6.381	4.088	11.218	11.502	3.376	4.352	5.279	7.272	7.592	9.481	5.005	8.085	2.207	2.602	4.802	6.720	2.337	1.187	2.609	3.700	0.707	2.827	8.809	5.958	5.657	3.917	2.236	2.872
7106	chr6	169764311	169772695	+	0	NA	Intergenic	Intergenic	-114294	NM_003247	7058	Hs.371147	NM_003247	ENSG00000186340	THBS2	TSP2	thrombospondin 2	protein-coding	0.580	nan	0.805	0.839	0.245	0.077	1.221	0.045	0.019	0.169	0.080	1.273	1.778	0.063	0.063	0.305	0.212	0.198	0.425	0.599	0.706	10.207	2.530	0.204	0.183	0.074	0.154	0.490	0.536	nan	0.129	0.181	0.307	0.393	0.155	0.086	0.131	0.393	0.354	0.020	0.128		0.143	1.221	1.273	0.046	0.097	0.060	0.074
455	chr1	113931403	113945888	+	0	NA	intron (NM_152900, intron 1 of 20)	intron (NM_152900, intron 1 of 20)	5170	NM_152900	260425	Hs.486189	NM_020965	ENSG00000081026	MAGI3	MAGI-3|dJ730K3.2	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	nan	1.553	1.779	1.031	0.961	0.432	0.813	0.416	0.144	0.511	0.211	0.850	3.401	0.750	0.144	0.719	1.051	1.339	1.672	2.195	nan	1.998	0.608	2.284	2.296	4.331	5.165	1.208	1.796	3.443	2.837	0.902	2.065	1.126	1.059	0.825	1.456	1.091	0.681	2.215	2.345	0.303	1.175	0.813	0.850	0.283	0.791	0.543	0.442
5395	chr3	68183170	68216166	+	0	NA	intron (NM_213609, intron 2 of 4)	intron (NM_213609, intron 2 of 4)	146309	NM_213609	407738	Hs.655061	NM_213609	ENSG00000183662	FAM19A1	TAFA-1|TAFA1	family with sequence similarity 19 member A1, C-C motif chemokine like	protein-coding	0.480	nan	0.482	0.067	3.378	1.467	0.128	0.041	0.029	0.318	0.289	0.182	0.149	0.033	0.093	0.167	0.096	0.325	0.370	0.384	0.421	2.408	0.745	0.126	0.115	0.305	0.493	0.184	0.148	0.303	0.149	0.135	0.181	0.271	0.201	0.103	nan	1.770	0.839	0.010	0.060	0.045	0.282	0.128	0.182	0.003	0.022	0.066	0.017
7371	chr7	91509116	91526493	+	0	NA	Intergenic	SVA_F|Other|Other	-7770	NM_006980	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF1	MTERF	mitochondrial transcription termination factor 1	protein-coding	nan	1.033	nan	0.410	0.591	0.341	0.627	0.545	0.129	0.405	0.276	0.482	0.867	0.499	0.178	0.985	0.890	0.458	0.682	0.826	0.812	2.575	0.756	1.090	1.149	0.707	0.988	0.770	0.717	2.029	2.206	0.661	1.010	1.419	1.138	2.447	nan	1.316	0.986	0.232	0.359	0.180	0.186	0.627	0.482	0.186	0.264	0.404	1.618
4472	chr2	113031846	113037059	+	0	NA	intron (NM_198581, intron 1 of 11)	intron (NM_198581, intron 1 of 11)	1274	NM_198581	376940	Hs.190477	NM_198581	ENSG00000188177	ZC3H6	ZC3HDC6	zinc finger CCCH-type containing 6	protein-coding	4.926	nan	4.443	4.801	5.599	3.072	4.957	3.050	0.422	2.072	1.025	6.154	nan	3.197	0.159	6.524	5.056	5.932	7.825	10.811	nan	7.933	6.128	16.056	16.126	4.257	5.100	7.350	12.142	8.184	8.435	4.643	6.329	3.576	3.292	9.478	6.992	2.236	1.263	4.718	2.397	0.584	1.935	4.957	6.154	1.606	2.767	1.862	2.873
7939	chr8	133371537	133386817	+	0	NA	intron (NM_004519, intron 1 of 14)	L1M5|LINE|L1	80332	NM_001204824	3786	Hs.374023	NM_004519	ENSG00000184156	KCNQ3	BFNC2|EBN2|KV7.3	potassium voltage-gated channel subfamily Q member 3	protein-coding	nan	0.461	0.697	0.600	0.307	0.142	0.059	0.088	0.179	0.051	0.042	0.063	0.558	0.050	0.060	0.329	0.137	0.170	0.257	0.323	0.335	0.154	0.091	nan	0.690	0.135	0.222	8.768	7.683	0.335	0.150	0.152	0.272	0.660	1.118	0.261	0.374	0.258	0.398	0.051	0.079	0.150	0.109	0.059	0.063	0.025	0.047	0.045	0.098
3181	chr16	76859566	76873334	+	0	NA	Intergenic	Intergenic	-36383	NR_039870	100616172		NR_039870	ENSG00000266426	MIR4719	-	microRNA 4719	ncRNA	0.447	0.477	nan	0.106	0.156	0.093	0.129	0.044	0.070	0.064	0.113	0.061	0.197	0.021	0.089	0.284	0.162	0.078	0.065	0.214	0.308	5.387	2.727	0.207	0.186	0.135	0.102	0.194	0.231	0.345	0.141	0.086	0.125	0.066	0.073	0.081	0.184	0.565	0.484	0.008	0.058	0.007	0.023	0.129	0.061	0.042	0.015	0.036	
2612	chr14	57493277	57558818	+	0	NA	Intergenic	Intergenic	-209559	NM_018229	55745	Hs.597349	NM_018229	ENSG00000053770	AP5M1	C14orf108|MUDENG|Mu5|MuD	adaptor related protein complex 5 mu 1 subunit	protein-coding	nan	nan	2.636	0.408	0.540	0.252	0.390	0.084	0.108	0.117	0.110	0.607	0.496	0.040	0.119	0.331	0.176	0.269	0.351	0.505	0.659	0.808	0.212	0.486	0.513	0.160	0.262	0.981	0.893	1.896	1.321	0.202	0.282	0.953	1.303	2.666	9.329	nan	0.510	0.058	0.234	0.275	0.144	0.390	0.607	0.198	0.130	0.048	1.971
5537	chr3	129028010	129036853	+	0	NA	Intergenic	Intergenic	-2683	NR_026991	339942	Hs.450096	NM_001025468		H1FX-AS1	C3orf47	H1FX antisense RNA 1	ncRNA	5.141	nan	3.476	2.683	5.833	3.122	4.050	2.312	0.274	2.320	1.291	4.076	5.260	1.526	0.076	2.721	3.894	3.497	4.577	6.697	5.619	7.441	3.074	3.118	3.153	2.654	nan	3.357	4.814	6.172	6.684	2.273	4.016	2.733	2.059	4.087	3.866	2.749	1.361	3.205	4.090	0.731	2.603	4.050	4.076	0.916	1.676	1.533	1.338
2272	chr13	37101307	37135906	+	0	NA	Intergenic	Intergenic	112197	NM_003914	8900	Hs.417050	NM_003914	ENSG00000133101	CCNA1	CT146	cyclin A1	protein-coding	0.592	0.931	0.788	0.190	0.165	0.099	0.151	0.080	0.042	0.355	0.267	0.332	0.981	0.031	0.067	0.681	0.694	0.122	0.133	0.575	0.558	4.654	1.709	0.142	0.133	0.145	0.260	0.413	0.511	0.384	0.255	0.149	0.211	0.186	0.137	0.215	0.277	1.662	0.664	2.490	0.891	0.033	0.051	0.151	0.332		1.390	0.034	0.053
1889	chr12	29300296	29308954	+	0	NA	intron (NM_001271783, intron 1 of 11)	intron (NM_001271783, intron 1 of 11)	2689	NM_001271783	55711	Hs.684482	NM_018099	ENSG00000064763	FAR2	HEL-S-81|MLSTD1|SDR10E2	fatty acyl-CoA reductase 2	protein-coding	nan	nan	nan	4.170	0.207	0.055	2.566	1.196	0.130	0.800	0.563	0.070	2.150	0.289	0.110	2.336	2.928	0.717	1.155	9.531	7.335	0.141	0.055	12.885	13.473	7.793	8.615	0.977	1.530	2.520	2.745	2.426	3.686	0.402	0.270	0.491	0.819	0.268	0.355	8.219	6.736	0.065	0.311	2.566	0.070	0.693	0.059	1.695	0.084
8006	chr8	145978895	145989006	+	0	NA	Intergenic	L2|LINE|L2	-2980	NM_138367	90987	Hs.534516	NM_138367	ENSG00000198169	ZNF251	-	zinc finger protein 251	protein-coding	4.623	1.575	nan	2.722	2.185	1.013	1.477	0.849	0.160	0.496	0.309	3.951	5.646	0.857	0.080	1.953	1.798	1.510	2.312	nan	6.142	nan	1.352	2.537	2.872	1.448	1.866	3.172	4.571	1.775	1.476	1.516	2.520	1.452	1.596	1.971	4.244	2.635	1.285	1.794	2.072	0.311	0.598	1.477	3.951	0.595	2.448	1.108	1.003
2692	chr14	78118719	78149689	+	0	NA	Intergenic	AluSq|SINE|Alu	40152	NM_006020	8846	Hs.94542	NM_006020	ENSG00000100601	ALKBH1	ABH|ABH1|ALKBH|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	1.640	1.259	1.205	0.400	0.419	0.238	1.236	0.216	0.182	0.188	0.153	0.282	3.187	0.118	0.135	0.374	0.302	0.432	0.586	1.811	1.861	0.996	0.275	0.427	0.410	1.189	1.741	0.692	nan	0.855	0.572	0.262	0.298	2.545	2.709	0.538	0.993	2.588	nan	2.842	1.714	0.889	1.058	1.236	0.282	0.451	0.151	0.037	0.355
2646	chr14	64106461	64110181	+	0	NA	5' UTR (NM_001258272, exon 1 of 3)	5' UTR (NM_001258272, exon 1 of 3)	320	NM_001008726	112840	Hs.655666	NM_080666	ENSG00000140006	WDR89	C14orf150|MSTP050	WD repeat domain 89	protein-coding	6.056	nan	3.059	6.394	4.248	2.450	4.131	2.951	0.314	1.513	1.055	3.538	8.530	4.941	0.198	5.255	5.373	4.404	6.476	7.113	6.257	5.351	2.656	21.986	24.388	4.459	4.795	7.678	11.056	9.887	9.601	3.024	4.382	7.464	7.610	4.731	5.991	4.131	1.920	4.109	4.656	1.123	3.343	4.131	3.538	1.538	1.869	1.724	2.013
7414	chr7	103497046	103511977	+	0	NA	intron (NM_173054, intron 2 of 63)	MamRep137|DNA|TcMar?	125452	NM_005045	5649	Hs.655654	NM_005045	ENSG00000189056	RELN	ETL7|LIS2|PRO1598|RL	reelin	protein-coding	nan	1.278	1.154	0.683	0.885	0.420	0.180	0.166	0.050	2.393	1.056	0.836	2.030	0.055	0.159	0.436	0.337	0.633	1.000	1.150	1.572	1.884	1.244	1.582	1.461	0.484	0.643	2.267	2.728	0.815	0.585	0.484	0.515	1.803	1.745	0.667	nan	2.155	1.279	0.030	0.433	0.509	0.138	0.180	0.836	0.301	0.869	0.205	0.213
8211	chr9	97530420	97537738	+	0	NA	intron (NM_032823, intron 2 of 14)	LTR33A|LTR|ERVL	12148	NM_001193329	84909	Hs.434253	NM_032823	ENSG00000148120	C9orf3	AOPEP|AP-O|APO|C90RF3|ONPEP	chromosome 9 open reading frame 3	protein-coding	1.298	nan	1.970	2.162	1.175	0.515	1.164	0.140	0.022	2.514	1.124	4.802	1.089	0.059	0.110	0.312	0.242	0.408	nan	4.046	4.304	4.632	2.103	0.252	0.119	3.133	3.286	1.474	1.964	0.495	0.318	0.283	0.274	1.808	2.032	0.184	0.689	4.888	2.606	0.424	0.145	0.220	0.456	1.164	4.802	0.170	0.841	0.163	0.219
10	chr1	1163899	1174885	+	0	NA	3' UTR (NM_080605, exon 1 of 1)	3' UTR (NM_080605, exon 1 of 1)	1763	NM_080605	126792	Hs.284284	NM_080605	ENSG00000176022	B3GALT6	EDSP2|SEMDJL1|beta3GalT6	beta-1,3-galactosyltransferase 6	protein-coding	2.114	nan	2.179	2.375	1.115	0.699	0.782	0.863	0.191	0.707	0.263	0.731	2.037	1.372	0.094	3.256	4.496	1.644	2.804	3.181	3.133	1.379	0.627	6.189	6.240	1.835	nan	nan	12.768	nan	1.409	2.112	3.409	0.921	0.894	1.769	1.442	1.268	0.759	1.165	1.353	0.086	5.197	0.782	0.731	0.419	0.835	0.686	0.573
4762	chr2	235787328	235796503	+	0	NA	Intergenic	Intergenic	-68713	NM_014521	23677	Hs.516777	NM_014521	ENSG00000130147	SH3BP4	BOG25|TTP	SH3 domain binding protein 4	protein-coding	0.777	nan	0.565	0.238	0.589	0.247	0.655	0.410	0.087	0.257	0.136	0.728	0.498	0.082	0.096	0.906	0.675	7.469	5.137	0.302	0.473	0.882	0.281	0.388	0.455	0.451	0.695	0.460	nan	0.610	0.328	0.312	0.655	0.381	0.535	0.307	0.384	1.010	0.579	0.230	0.164	0.030	0.147	0.655	0.728	0.152	0.168	0.403	0.054
5574	chr3	139839899	139873491	+	0	NA	intron (NM_022131, intron 1 of 16)	MIRc|SINE|MIR	202668	NM_022131	64084	Hs.158529	NM_022131	ENSG00000158258	CLSTN2	ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma	calsyntenin 2	protein-coding	1.275	nan	nan	0.199	0.618	0.424	0.205	0.146	0.148	0.216	0.212	0.256	0.237	0.026	0.083	0.738	0.463	2.554	1.191	0.568	0.619	8.442	2.411	0.213	0.250	3.263	3.964	0.314	0.285	nan	1.780	0.381	0.558	0.293	0.264	1.400	3.713	0.670	0.592	0.512	0.116	0.048	0.106	0.205	0.256	0.413	0.061	0.077	0.578
1081	chr10	26501993	26511298	+	0	NA	intron (NM_001134366, intron 2 of 15)	CpG-2659	1409	NM_001134366	2572	Hs.231829	NM_000818	ENSG00000136750	GAD2	GAD65	glutamate decarboxylase 2	protein-coding	0.421	2.974	0.756	0.833	11.381	5.290	2.656	0.179	0.223	2.378	1.601	0.044	0.098	0.046	0.069	1.212	2.134	0.212	0.355	4.115	3.106	6.401	1.900	0.099	0.139	0.994	1.423	0.106	0.103	0.421	0.421	0.291	0.378	7.463	7.095	0.094	0.163	3.489	2.110	4.275	0.763	2.436	0.180	2.656	0.044		0.011	0.032	
4769	chr2	237305855	237313932	+	0	NA	intron (NM_001270584, intron 7 of 17)	intron (NM_001270584, intron 7 of 17)	102447	NM_001270585	79781	Hs.591594	NM_024726	ENSG00000132321	IQCA1	4930465P12Rik|DRC11|IQCA	IQ motif containing with AAA domain 1	protein-coding	0.648	nan	0.494	0.114	0.247	0.105	0.158	0.049	0.079	0.010	0.114	0.134	0.415	0.067	0.126	6.799	8.522	1.437	0.280	0.325	0.258	0.088	0.087	2.787	2.889	0.146	0.358	0.478	nan	0.336	0.212	1.925	3.110	0.026	0.050	0.069	0.162	0.077	0.229	0.056	0.076	0.012	0.049	0.158	0.134	0.183	0.038	1.666	0.032
7666	chr8	48870757	48875338	+	0	NA	promoter-TSS (NM_006904)	promoter-TSS (NM_006904)	284	NM_005914	4173	Hs.460184	NM_005914	ENSG00000104738	MCM4	CDC21|CDC54|NKCD|NKGCD|P1-CDC21|hCdc21	minichromosome maintenance complex component 4	protein-coding	9.987	nan	6.076	6.304	7.419	3.571	5.580	2.998	0.559	3.462	1.329	6.735	13.851	4.595	0.173	8.268	6.738	8.619	12.092	13.563	12.905	9.806	8.267	6.790	6.685	5.309	6.524	9.787	17.740	9.802	12.146	6.603	9.923	8.529	11.542	10.481	7.901	6.265	3.043	4.918	5.406	1.888	3.407	5.580	6.735	0.483	5.240	2.355	3.052
7340	chr7	77349099	77361127	+	0	NA	intron (NM_198467, intron 1 of 7)	AluSp|SINE|Alu	-28451	NR_038361	100505854	Hs.72451	NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator (non-protein coding)	ncRNA	nan	0.971	3.372	0.986	0.942	0.463	0.574	0.406	0.294	0.535	0.593	1.189	1.194	0.215	0.156	0.560	0.764	0.422	nan	1.791	1.819	1.282	0.553	0.345	0.344	1.285	nan	1.061	nan	6.547	5.465	0.365	0.600	1.875	2.531	1.896	3.219	0.855	0.732	0.117	0.282	0.436	0.996	0.574	1.189	1.255	0.084	0.163	0.893
4111	chr19	47606293	47635808	+	0	NA	Intergenic	AluSx3|SINE|Alu	-4041	NM_015168	23211	Hs.104661	NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding	3.799	2.330	3.022	2.067	2.959	1.511	2.650	1.726	0.424	1.680	0.742	3.241	3.414	2.739	0.179	3.383	3.021	3.601	4.817	5.237	5.119	5.225	3.310	9.343	10.386	3.153	4.112	3.979	6.126	3.536	3.211	4.423	5.918	3.123	3.774	4.192	4.827	2.525	1.259	3.037	3.973	0.818	1.263	2.650	3.241	0.902	1.232	3.821	1.703
5445	chr3	105082860	105092071	+	0	NA	intron (NM_001243280, intron 1 of 14)	intron (NM_001243280, intron 1 of 14)	1908	NM_001243280	214	Hs.591293	NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding	nan	nan	2.450	1.284	5.759	3.026	1.371	1.813	0.157	4.170	2.117	3.480	11.725	0.366	0.085	3.730	4.895	5.488	7.638	4.773	3.081	15.148	6.251	5.603	5.567	1.815	2.326	2.151	3.322	5.433	5.545	4.541	10.232	6.028	4.660	0.569	0.986	2.482	1.374	3.074	4.584	1.814	0.207	1.371	3.480	0.357	1.883	4.972	0.362
4903	chr20	25509663	25549078	+	0	NA	intron (NM_025176, intron 1 of 23)	intron (NM_025176, intron 1 of 23)	36797	NM_001318226	22981	Hs.631508	NM_025176	ENSG00000101004	NINL	NLP	ninein like	protein-coding	1.315	1.334	nan	0.201	0.298	0.175	0.286	0.210	0.111	0.107	0.173	0.207	0.553	0.088	0.064	1.148	1.682	0.399	0.547	0.503	0.599	0.605	0.257	0.446	0.450	0.436	0.737	0.943	1.118	0.975	0.638	0.476	0.784	0.173	0.140	1.749	5.908	0.545	0.509	0.334	0.122	0.024	0.030	0.286	0.207	0.170	0.131	0.370	2.687
2364	chr13	86363730	86380981	+	0	NA	intron (NM_032229, intron 1 of 1)	intron (NM_032229, intron 1 of 1)	1128	NM_032229	84189	Hs.525105	NM_032229	ENSG00000184564	SLITRK6	DFNMYP	SLIT and NTRK like family member 6	protein-coding	nan	9.234	0.523	0.692	0.309	0.111	0.244	0.238	0.065	1.550	1.189	0.035	0.740	0.012	0.105	0.898	0.400	0.901	0.729	0.859	0.839	2.019	0.997	0.530	0.518	0.049	0.067	1.892	1.996	0.427	0.153	0.208	0.364	0.186	0.138	0.509	1.157	0.246	0.120	0.006	0.067	0.028	0.101	0.244	0.035		1.565	0.053	0.187
173	chr1	29527159	29568286	+	0	NA	intron (NM_001024732, intron 1 of 9)	FAM|SINE|Alu	9748	NM_001024732	51102	Hs.183646	NM_016011	ENSG00000116353	MECR	CGI-63|FASN2B|NRBF1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	1.623	0.935	nan	0.509	0.538	0.306	0.434	0.273	0.098	0.286	0.214	0.559	1.488	0.340	0.115	0.596	0.732	0.711	1.387	1.242	1.381	0.803	0.264	0.682	0.779	0.833	1.465	0.680	0.887	0.810	0.698	0.471	0.706	0.511	0.477	1.431	3.431	1.119	0.645	0.306	0.371	0.099	0.177	0.434	0.559	0.208	0.504	0.113	0.721
4118	chr19	48315738	48333302	+	0	NA	promoter-TSS (NM_000554)	promoter-TSS (NM_000554)	-577	NM_000554	1406	Hs.617342	NM_000554	ENSG00000105392	CRX	CORD2|CRD|LCA7|OTX3	cone-rod homeobox	protein-coding	1.139	0.774	1.124	0.076	0.316	0.238	0.079	0.068	0.118	0.055	0.066	0.061	0.212	0.161	0.112	0.165	0.171	0.175	0.271	0.295	0.333	0.290	0.174	0.261	0.327	0.194	0.380	0.142	0.226	1.257	0.791	0.141	0.158	0.084	0.114	3.108	10.542	0.363	0.423	0.025	0.035	0.016	0.032	0.079	0.061	0.022	0.029	0.061	4.030
66	chr1	9293925	9336487	+	0	NA	intron (NM_001282587, intron 3 of 4)	L1MB8|LINE|L1	15303	NM_001282587	9563	Hs.463511	NM_004285	ENSG00000049239	H6PD	CORTRD1|G6PDH|GDH	hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase	protein-coding	1.455	nan	1.283	0.842	0.385	0.219	0.440	0.367	0.159	0.137	0.158	0.177	0.806	0.342	0.106	0.475	0.500	0.595	0.926	1.303	1.364	0.118	0.077	1.500	1.554	0.572	nan	nan	6.104	nan	0.742	0.428	0.533	0.163	0.144	0.709	0.904	0.417	0.503	0.217	0.401	0.027	0.139	0.440	0.177	0.130	1.140	0.090	0.210
2709	chr14	80169770	80185417	+	0	NA	intron (NM_001105250, intron 5 of 6)	intron (NM_001105250, intron 5 of 6)	431911	NR_073546	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding	nan	0.631	0.845	0.095	0.409	0.194	0.588	0.148	0.062	0.090	0.080	0.038	0.523	0.028	0.101	0.398	0.244	0.685	0.818	0.653	0.768	0.106	0.057	7.180	7.673	1.105	1.535	0.330	0.451	0.650	0.274	0.228	0.313	0.639	0.610	0.160	0.220	0.783	0.951	0.408	0.109	0.291	0.082	0.588	0.038	0.131	0.013	0.070	0.073
3130	chr16	47489885	47502508	+	0	NA	intron (NM_000293, intron 1 of 30)	intron (NM_000293, intron 1 of 30)	986	NM_001031835	5257	Hs.78060	NM_000293	ENSG00000102893	PHKB	-	phosphorylase kinase regulatory subunit beta	protein-coding	1.564	1.197	2.938	1.740	1.281	0.621	2.051	1.057	0.244	0.596	0.261	1.260	1.845	0.903	0.093	4.385	4.051	1.791	1.739	1.829	1.924	1.375	0.931	15.869	16.165	1.129	1.567	2.357	3.321	2.215	1.741	1.808	3.396	0.726	0.726	1.274	1.628	1.143	0.847	0.528	0.802	0.152	0.918	2.051	1.260	0.262	0.796	1.373	0.713
5272	chr22	39847867	39871901	+	0	NA	intron (NM_002409, intron 1 of 1)	AluJr|SINE|Alu	6559	NM_002409	4248	Hs.276808	NM_002409	ENSG00000128268	MGAT3	GNT-III|GNT3	mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase	protein-coding	1.342	nan	0.618	0.333	0.624	0.258	0.788	0.075	0.095	0.130	0.068	0.930	0.708	0.939	0.110	2.065	2.921	0.350	0.401	1.312	1.227	0.609	0.287	0.197	0.226	0.608	nan	0.768	1.204	nan	0.910	0.653	1.240	0.261	0.194	0.803	1.615	0.663	0.432	1.766	0.885	0.035	0.204	0.788	0.930	0.662	0.161	0.715	0.211
7673	chr8	52808980	52818003	+	0	NA	Intergenic	Intergenic	-1745	NM_001286783	115294	Hs.671268	NM_052937	ENSG00000168300	PCMTD1	-	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	7.470	nan	4.569	3.756	2.553	1.419	3.047	1.777	0.230	2.705	1.477	4.127	5.256	2.318	0.173	5.646	6.243	5.319	7.214	7.046	7.596	7.721	3.144	5.988	5.549	3.737	nan	3.376	5.529	5.855	6.774	3.205	6.437	5.581	6.200	5.224	6.736	4.912	2.690	2.517	2.616	1.435	2.169	3.047	4.127	0.972	2.792	2.476	2.334
1696	chr11	119887555	119907906	+	0	NA	Intergenic	LTR12C|LTR|ERV1	101891	NM_001330382	23650	Hs.504115	NM_012101	ENSG00000137699	TRIM29	ATDC	tripartite motif containing 29	protein-coding	0.705	0.491	0.573	0.047	0.349	0.150	0.461	0.051	0.039	0.135	0.173	0.539	0.599	0.074	0.106	0.849	nan	0.133	0.216	2.783	2.839	0.558	0.283	0.250	0.229	0.237	nan	0.438	0.556	0.625	0.475	0.858	1.055	0.160	0.129	0.283	0.798	1.582	0.846	4.504	0.332	0.023	0.116	0.461	0.539	0.114	0.045	0.716	0.198
3168	chr16	71916379	71930678	+	0	NA	Intergenic	AluSz|SINE|Alu	-4783	NM_001270976	9798	Hs.232194	NM_014761	ENSG00000182149	IST1	OLC1	IST1, ESCRT-III associated factor	protein-coding	2.933	2.074	nan	3.459	3.194	1.859	2.254	1.204	0.326	0.998	0.569	2.411	5.356	2.680	0.180	2.484	2.804	2.504	3.319	3.565	3.111	3.642	1.409	6.401	6.679	1.183	1.805	2.634	4.126	3.940	4.018	1.194	2.415	1.764	1.703	2.415	2.752	1.642	0.850	1.057	2.564	0.613	1.452	2.254	2.411	0.961	1.474	1.019	0.922
5486	chr3	115865875	115877422	+	0	NA	intron (NM_002338, intron 1 of 6)	intron (NM_002338, intron 1 of 6)	-207223	NR_109998	101926903	Hs.26479	NR_109998	ENSG00000240922	LSAMP-AS1	-	LSAMP antisense RNA 1	ncRNA	1.320	nan	0.767	0.183	2.364	1.273	0.285	0.226	0.069	0.664	0.461	0.166	0.133	0.376	0.086	0.319	0.270	0.553	0.605	0.330	nan	0.598	0.110	0.322	0.313	7.344	7.043	0.354	0.333	1.393	1.089	0.166	0.217	1.484	1.588	0.264	0.574	0.709	0.441	0.053	0.113	0.483	0.187	0.285	0.166	0.329	0.088	0.061	0.139
3469	chr17	55535776	55555461	+	0	NA	intron (NM_170721, intron 5 of 9)	AluY|SINE|Alu	55340	NR_110808	101927557	Hs.639984	NR_110808	ENSG00000266100	LOC101927557	-	uncharacterized LOC101927557	ncRNA	1.720	1.292	1.423	0.382	2.216	1.276	1.034	0.375	0.066	0.220	0.179	0.725	1.453	0.081	0.099	0.770	0.865	0.680	0.969	0.915	1.172	1.158	0.326	nan	0.670	0.836	1.195	nan	nan	1.317	1.113	0.407	0.658	1.516	1.911	1.572	5.004	0.873	0.687	1.419	0.716	0.509	0.497	1.034	0.725	0.367	0.839	0.160	3.593
5580	chr3	140968439	140992319	+	0	NA	intron (NM_152282, intron 4 of 7)	intron (NM_152282, intron 4 of 7)	29712	NM_001037172	92370	Hs.657887	NM_152282	ENSG00000155893	PXYLP1	ACPL2|HEL124|XYLP	2-phosphoxylose phosphatase 1	protein-coding	1.192	nan	nan	0.181	0.375	0.242	0.263	0.208	0.148	0.497	0.393	0.196	0.211	0.045	0.084	0.328	0.310	0.300	0.517	0.892	0.785	nan	0.382	0.351	0.384	0.945	nan	0.308	nan	nan	0.493	0.234	0.242	0.065	0.114	0.374	0.563	2.583	1.279	0.116	0.159	0.024	0.036	0.263	0.196	0.102	0.458	0.043	0.130
6822	chr6	56379936	56393524	+	0	NA	intron (NM_001144769, intron 63 of 96)	intron (NM_001144769, intron 63 of 96)	120964	NM_015548	667	Hs.604915	NM_001723	ENSG00000151914	DST	BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2	dystonin	protein-coding	1.331	0.943	nan	0.161	0.473	0.271	4.916	1.283	0.095	0.501	0.417	0.061	0.341	0.157	0.171	0.481	0.442	0.432	0.694	0.636	0.784	3.232	1.632	0.299	0.322	1.114	1.487	1.522	1.764	2.337	1.547	0.239	0.371	0.313	0.353	0.537	1.846	1.779	0.791	0.151	0.183	0.062	0.238	4.916	0.061	0.014	0.569	0.062	0.283
59	chr1	8561838	8587151	+	0	NA	intron (NM_012102, intron 8 of 23)	intron (NM_012102, intron 8 of 23)	-19521	NR_132752	106632271		NR_132752		SNORD128	ZL43	small nucleolar RNA, C/D box 128	snoRNA	1.451	nan	1.333	0.390	0.463	0.240	0.374	0.670	0.154	0.447	0.229	0.213	0.619	0.252	0.120	0.390	0.576	0.502	1.012	1.167	1.302	0.779	0.363	0.861	0.833	1.349	nan	nan	3.236	nan	1.938	0.496	0.662	0.176	0.186	2.262	5.825	1.040	0.681	0.124	0.440	0.048	0.193	0.374	0.213	0.075	0.105	0.217	1.303
4572	chr2	164310437	164332682	+	0	NA	Intergenic	Intergenic	270958	NM_018086	55137	Hs.593650	NM_018086	ENSG00000182263	FIGN	-	fidgetin, microtubule severing factor	protein-coding	1.081	0.817	nan	0.097	0.575	0.347	0.173	0.105	0.072	0.532	0.250	0.101	0.365	0.239	0.101	0.378	0.251	0.563	0.393	0.881	0.720	0.094	0.071	0.283	0.239	0.612	0.840	0.223	0.288	0.408	0.157	0.175	0.266	3.355	3.712	0.907	2.440	0.612	0.455	0.102	0.056	0.847	0.036	0.173	0.101	0.022	0.064	0.071	0.310
8345	chr9	140127846	140142695	+	0	NA	promoter-TSS (NM_006088)	promoter-TSS (NM_006088)	-441	NM_006088	10383	Hs.433615	NM_006088	ENSG00000188229	TUBB4B	Beta2|TUBB2|TUBB2C	tubulin beta 4B class IVb	protein-coding	1.993	2.271	3.751	4.896	2.751	1.439	1.669	0.826	0.196	1.890	0.803	3.934	5.150	1.244	0.081	1.533	3.095	1.469	nan	8.512	nan	3.582	1.399	1.491	1.499	0.855	1.170	4.746	6.317	3.171	3.441	0.915	1.623	3.248	2.160	1.762	2.200	2.596	1.675	5.120	3.011	0.904	1.842	1.669	3.934	1.036	2.185	0.552	0.733
3388	chr17	37599859	37627831	+	0	NA	Intergenic	AluSp|SINE|Alu	-3919	NM_016507	51755	Hs.345028	NM_015083	ENSG00000167258	CDK12	CRK7|CRKR|CRKRS	cyclin dependent kinase 12	protein-coding	nan	1.666	1.455	0.716	2.115	1.101	1.105	0.785	0.372	0.785	0.534	1.208	2.423	0.749	0.117	2.314	1.986	2.357	3.162	nan	2.587	2.841	1.526	8.047	8.784	1.537	2.121	2.712	4.378	nan	3.203	1.922	2.783	1.371	2.148	2.486	2.778	1.731	0.996	0.678	0.833	0.228	0.651	1.105	1.208	0.315	0.537	0.551	0.696
4546	chr2	151313894	151354137	+	0	NA	intron (NM_005168, intron 3 of 5)	intron (NM_005168, intron 3 of 5)	10194	NM_005168	390	Hs.6838	NM_005168	ENSG00000115963	RND3	ARHE|Rho8|RhoE|memB	Rho family GTPase 3	protein-coding	nan	0.695	nan	0.257	0.969	0.479	0.401	0.955	0.111	0.163	0.247	0.243	2.581	2.618	0.113	0.762	0.942	1.474	2.606	1.062	0.752	0.809	0.353	1.243	1.204	0.752	1.234	0.403	0.444	1.171	1.566	0.368	0.940	0.404	0.213	0.521	0.971	0.542	0.469	0.927	0.417	0.083	0.509	0.401	0.243	0.204	0.244	0.268	0.116
5951	chr4	80771684	80789222	+	0	NA	intron (NR_026555, intron 1 of 1)	L2a|LINE|L2	31828	NR_026555	118425	Hs.104215	NR_026555	ENSG00000251321	PCAT4	GDEP|PCA4|PCAN1	prostate cancer associated transcript 4 (non-protein coding)	ncRNA	1.184	0.797	0.880	0.459	0.263	0.120	0.222	0.228	0.055	0.295	0.176	0.089	0.524	0.025	0.065	0.292	0.171	0.179	0.258	0.327	0.400	2.769	1.006	0.259	0.294	1.146	nan	1.382	0.657	2.564	1.991	0.094	0.116	0.635	0.638	1.687	nan	0.891	0.654	0.032	0.148	0.066	0.063	0.222	0.089	0.188	0.667	0.027	1.800
7461	chr7	121941449	121950900	+	0	NA	non-coding (NR_036484, exon 3 of 7)	non-coding (NR_036484, exon 3 of 7)	-1609	NM_001024613	389549	Hs.553970	NM_001024613	ENSG00000128610	FEZF1	FEZ|HH22|ZNF312B	FEZ family zinc finger 1	protein-coding	3.048	0.761	1.121	0.445	0.908	0.524	1.041	0.071	0.089	0.215	0.240	1.565	2.666	0.034	0.099	6.024	8.588	2.392	2.197	2.390	1.492	1.711	0.608	0.481	0.421	0.073	0.172	0.390	0.568	1.612	1.729	0.247	0.463	3.411	2.115	0.390	0.765	0.811	0.495	0.041	0.624	1.041	1.677	1.041	1.565	1.385	0.054	0.031	0.146
5316	chr3	132500	174039	+	0	NA	Intergenic	LTR88b|LTR|Gypsy?	-85010	NM_006614	10752	Hs.148909	NM_006614	ENSG00000134121	CHL1	CALL|L1CAM2	cell adhesion molecule L1 like	protein-coding	0.444	1.421	0.553	0.313	0.619	0.305	0.514	0.067	0.093	0.137	0.066	0.401	5.399	0.034	0.057	0.222	0.163	1.649	1.590	0.693	0.858	2.279	0.944	0.193	0.179	0.096	0.200	0.527	1.125	0.518	0.345	0.431	0.635	0.280	0.351	0.177	0.201	1.041	0.587	0.388	0.588	0.085	0.123	0.514	0.401	0.010	0.027	0.538	0.068
2358	chr13	84928606	84933509	+	0	NA	intron (NR_046871, intron 3 of 6)	MIRb|SINE|MIR	216320	NR_046871	100874128	Hs.578060	NR_046871		LINC00333	NCRNA00333	long intergenic non-protein coding RNA 333	ncRNA	nan	nan	0.496	0.019	0.187	0.126	0.297	0.122	0.065	0.097	0.042	0.193	0.232		0.091	1.117	0.528	9.332	1.684	0.329	0.436	0.595	0.170	5.974	6.160	0.046	0.194	0.314	0.334	0.375	0.193	0.349	0.708	0.086	0.111	0.179	0.248	0.166	0.134		0.018		0.081	0.297	0.193	0.041	0.020	0.242	0.075
2498	chr14	25062922	25069180	+	0	NA	Intergenic	L1M2|LINE|L1	12875	NM_001270780	2999	Hs.348264	NM_033423	ENSG00000100450	GZMH	CCP-X|CGL-2|CSP-C|CTLA1|CTSGL2	granzyme H	protein-coding	nan	0.648	0.603	0.111	0.188	0.077	0.103	0.145	0.257	0.020	0.133	0.057	0.289		0.187	2.213	0.952	6.938	4.196	0.261	0.350	0.109	0.069	0.421	0.363	0.193	0.368	0.271	nan	0.450	0.197	0.242	0.204	0.020	0.128	0.070	0.255	0.255	0.213	0.027	0.127	0.035	0.051	0.103	0.057		0.033	0.052	0.058
2247	chr13	26819805	26831840	+	0	NA	Intergenic	LTR85c|LTR|Gypsy?	-2419	NM_001346501	1024	Hs.382306	NM_001260	ENSG00000132964	CDK8	K35	cyclin dependent kinase 8	protein-coding	2.022	1.526	2.949	2.081	0.511	0.333	0.299	0.451	0.160	0.651	0.460	1.283	2.250	0.646	0.109	2.710	3.039	1.671	nan	3.700	3.231	2.736	1.061	1.234	1.045	1.675	2.173	1.361	2.243	4.111	4.821	1.497	3.329	1.067	0.957	2.982	3.074	4.205	2.246	0.343	1.070	0.220	0.706	0.299	1.283	0.282	0.848	0.874	0.899
5739	chr3	183002720	183025539	+	0	NA	intron (NM_015078, intron 12 of 29)	L2b|LINE|L2	43097	NM_032047	84002	Hs.718506	NM_032047	ENSG00000176597	B3GNT5	B3GN-T5|beta3Gn-T5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	1.277	1.771	1.046	0.766	1.246	0.612	0.271	1.089	0.148	1.523	0.560	0.879	3.469	0.029	0.069	0.592	0.550	0.401	0.848	0.535	0.618	2.147	0.368	0.305	0.313	0.824	1.323	1.520	1.542	1.375	1.117	0.191	0.294	1.597	2.296	0.523	0.801	1.552	1.072	0.260	0.150	0.134	0.194	0.271	0.879	0.276	1.005	0.035	0.335
219	chr1	37754542	37773813	+	0	NA	Intergenic	Intergenic	137013	NR_036217	100422898		NR_036217	ENSG00000264698	MIR4255	-	microRNA 4255	ncRNA	0.968	nan	1.430	0.173	0.437	0.258	0.341	0.093	0.067	0.253	0.185	0.124	0.911	0.079	0.131	0.263	0.200	0.085	0.152	0.487	0.578	nan	0.499	0.141	0.139	0.796	1.271	1.490	2.249	nan	0.348	0.573	0.751	0.271	0.160	0.296	0.486	3.635	nan	1.705	0.167	0.039	0.919	0.341	0.124	0.170	0.183	0.172	0.060
1016	chr10	11044191	11079357	+	0	NA	intron (NM_001326345, intron 1 of 13)	intron (NM_001326345, intron 1 of 13)	1055	NM_001326345	10659	Hs.309288	NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR	CUGBP, Elav-like family member 2	protein-coding	nan	0.874	0.470	0.069	0.403	0.252	0.377	0.164	0.119	0.322	0.158	0.047	1.179	2.756	0.113	2.212	2.493	2.898	2.510	0.790	0.798	3.947	0.856	0.652	0.642	0.582	0.783	0.121	0.119	0.294	0.355	0.904	2.013	0.092	0.052	0.143	0.151	0.087	0.167	0.172	0.215	0.011	0.249	0.377	0.047	0.011	0.014	1.415	0.021
4958	chr20	43949325	43977649	+	0	NA	intron (NM_002999, intron 2 of 4)	MIRb|SINE|MIR	13577	NM_002999	6385	Hs.632267	NM_002999	ENSG00000124145	SDC4	SYND4	syndecan 4	protein-coding	nan	nan	2.416	1.394	0.585	0.283	0.458	1.240	0.164	0.371	0.192	1.645	3.336	0.503	0.133	0.664	0.928	0.992	1.814	0.674	0.763	nan	0.522	0.823	0.836	0.299	0.487	2.332	2.921	nan	0.683	0.974	1.540	0.846	1.055	1.624	5.646	0.544	0.369	0.075	0.213	0.301	0.070	0.458	1.645	0.058	0.158	0.977	1.776
3734	chr18	33983498	34005419	+	0	NA	intron (NM_025135, intron 3 of 24)	intron (NM_025135, intron 3 of 24)	116799	NM_001281739	80206	Hs.436636	NM_025135	ENSG00000134775	FHOD3	FHOS2|Formactin2	formin homology 2 domain containing 3	protein-coding	nan	0.835	1.274	0.176	0.329	0.242	0.358	0.126	0.081	0.258	0.116	0.084	0.394	0.025	0.071	0.400	0.251	0.256	0.333	0.479	0.555	1.795	0.828	0.244	0.183	0.412	0.535	nan	1.858	0.517	0.455	0.116	0.188	1.400	2.522	0.197	0.314	1.337	1.120	0.101	0.106	0.199	0.096	0.358	0.084	0.115	0.074	0.032	0.215
390	chr1	87167846	87173379	+	0	NA	promoter-TSS (NR_135837)	promoter-TSS (NR_135837)	359	NM_001206653	51100	Hs.136309	NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like endophilin B1	protein-coding	4.103	nan	nan	4.121	4.565	2.376	3.553	2.856	0.444	1.844	0.717	5.921	11.194	2.376	0.190	3.510	4.938	3.274	4.903	8.300	7.724	10.591	3.687	8.121	8.257	2.657	3.712	16.242	20.332	7.065	7.206	2.167	5.070	3.511	3.981	3.102	3.178	3.134	1.552	4.156	4.535	0.840	2.135	3.553	5.921	1.089	2.497	1.651	1.425
5319	chr3	5017536	5029801	+	0	NA	intron (NM_003670, intron 4 of 4)	intron (NM_003670, intron 4 of 4)	-2022	NR_037903	100507582	Hs.434505	NR_037903	ENSG00000235831	BHLHE40-AS1	-	BHLHE40 antisense RNA 1	ncRNA	2.656	5.174	1.835	0.343	1.576	0.829	1.629	3.547	0.162	0.999	0.659	0.215	6.735	6.935	0.122	0.549	2.369	1.935	5.354	2.871	1.938	0.317	0.182	3.322	3.331	0.693	0.992	1.595	2.337	1.615	2.729	1.731	3.104	2.587	2.703	1.384	3.062	0.349	0.280	1.084	1.496	1.004	1.314	1.629	0.215	0.412	4.490	2.295	1.164
1515	chr11	72712681	72721695	+	0	NA	intron (NM_014824, intron 4 of 19)	AluJr|SINE|Alu	126223	NR_039664	100616233		NR_039664	ENSG00000265421	MIR4459	-	microRNA 4459	ncRNA	nan	0.820	0.756	0.175	0.192	0.138	0.085	0.116	0.108	0.053	0.154	0.089	0.396	0.096	0.121	2.378	1.563	5.453	0.866	0.448	0.526	0.318	0.114	2.650	3.016	0.557	0.860	0.345	0.434	0.316	0.234	0.229	0.385	0.403	0.463	0.236	0.479	0.427	0.426	0.024	0.069	0.107	0.154	0.085	0.089	0.170	0.077	0.055	0.124
945	chr1	239749802	239752771	+	0	NA	intron (NM_001347716, intron 3 of 7)	intron (NM_001347716, intron 3 of 7)	-41087	NM_000740	1131	Hs.7138	NM_000740	ENSG00000133019	CHRM3	EGBRS|HM3|PBS	cholinergic receptor muscarinic 3	protein-coding	0.801	1.485	1.602	0.393	0.371	0.320	1.045	0.073		0.052	0.230	0.202	0.327	0.111	0.116	5.553	3.695	19.595	4.697	0.264	0.322	nan	0.228	2.921	2.591	0.248	0.535	nan	0.203	0.304	0.150	1.044	2.403	0.058	0.033	0.210	0.325	nan	0.486	0.037	0.090	0.065		1.045	0.202		0.067	0.785	0.116
5153	chr21	44757469	44791690	+	0	NA	Intergenic	LTR33A|LTR|ERVL	7650	NR_131902	101928399	Hs.517319	NR_131902	ENSG00000237989	LINC01679	TCONS_00029157	long intergenic non-protein coding RNA 1679	ncRNA	nan	1.215	3.298	0.421	1.127	0.551	0.889	0.088	0.071	0.182	0.107	0.663	1.933	0.055	0.068	1.617	2.524	0.507	0.734	0.987	1.017	nan	0.330	4.908	5.029	1.449	nan	2.020	2.444	1.049	1.073	1.085	1.582	2.509	2.599	0.433	0.396	2.061	1.234	3.512	0.915	0.588	0.172	0.889	0.663	0.448	3.866	0.952	0.116
5543	chr3	130556754	130573628	+	0	NA	Intergenic	Intergenic	-4178	NM_001199182	27032	Hs.584884	NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding	1.180	nan	nan	1.550	1.727	0.748	2.743	0.541	0.181	0.419	0.320	1.146	3.365	0.026	0.067	1.477	3.047	0.797	1.301	2.504	2.560	2.818	1.047	1.769	1.798	0.592	0.860	3.415	3.722	nan	0.847	0.842	1.046	1.238	0.908	0.254	0.512	4.415	1.771	2.306	0.916	0.278	1.660	2.743	1.146	0.688	0.042	0.699	0.080
959	chr1	243715833	243743873	+	0	NA	intron (NM_001206729, intron 9 of 13)	intron (NM_001206729, intron 9 of 13)	220375	NR_039824	100616343		NR_039824	ENSG00000265201	MIR4677	mir-4677	microRNA 4677	ncRNA	nan	1.243	nan	0.242	0.526	0.291	0.202	0.191	0.126	0.296	0.296	0.303	0.270	0.075	0.092	0.434	0.298	0.372	0.431	0.589	0.888	0.508	0.251	0.367	0.356	6.691	6.186	0.271	0.272	1.314	0.840	0.106	0.175	1.129	1.548	0.578	1.222	0.457	0.394	0.030	0.047	0.340	0.090	0.202	0.303	0.237	0.040	0.025	0.237
3194	chr16	84267913	84287380	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-4290	NM_172347	93107	Hs.335877	NM_133490	ENSG00000168418	KCNG4	KV6.3|KV6.4	potassium voltage-gated channel modifier subfamily G member 4	protein-coding	nan	0.598	0.819	0.179	0.258	0.148	0.317	0.066	0.094	0.057	0.059	0.183	0.232	0.095	0.071	0.340	0.339	0.173	0.207	0.294	0.356	0.604	0.251	0.239	0.279	0.079	0.191	0.327	0.504	4.459	3.627	0.167	0.204	0.124	0.126	1.270	3.678	0.361	0.462	0.066	0.082	0.015	0.049	0.317	0.183	0.279	0.033	0.030	0.762
4917	chr20	31032902	31073821	+	0	NA	intron (NM_001256798, intron 5 of 10)	intron (NM_001256798, intron 5 of 10)	18024	NM_080616	140688	Hs.516978	NM_080616	ENSG00000197183	NOL4L	C20orf112|C20orf113|dJ1184F4.2|dJ1184F4.4	nucleolar protein 4 like	protein-coding	1.807	1.395	1.506	0.479	0.614	0.346	0.976	0.594	0.177	0.318	0.201	0.838	1.182	1.070	0.091	4.371	6.042	2.127	1.894	1.281	nan	2.043	0.800	1.398	1.367	0.530	0.920	1.311	1.869	1.349	1.402	1.215	2.009	0.901	0.652	1.335	nan	0.520	0.370	0.776	0.795	0.294	0.302	0.976	0.838	0.233	0.317	0.885	0.689
7827	chr8	99075809	99098483	+	0	NA	intron (NM_001170806, intron 1 of 1)	L1MC3|LINE|L1	10396	NM_173549	203111	Hs.171455	NM_173549	ENSG00000177459	ERICH5	C8orf47	glutamate rich 5	protein-coding	nan	0.915	1.279	2.474	0.966	0.464	0.197	0.158	0.171	0.381	0.408	0.876	1.423	0.147	0.104	0.220	0.178	0.297	nan	1.112	1.013	7.424	2.639	0.530	0.538	0.238	0.447	2.587	3.272	0.441	0.198	0.397	0.401	2.140	1.403	0.401	0.925	2.478	1.023	0.034	0.208	0.596	0.073	0.197	0.876	0.013	0.640	0.101	0.239
737	chr1	187151739	187163951	+	0	NA	intron (NR_126347, intron 1 of 3)	intron (NR_126347, intron 1 of 3)	95871	NR_126347	104169671		NR_126347		LINC01036	-	long intergenic non-protein coding RNA 1036	ncRNA	nan	nan	1.112	0.163	1.261	0.877	0.230	0.144	0.093	0.714	0.404	0.383	0.302	0.018	0.127	0.590	0.409	0.390	0.577	0.590	nan	10.035	5.167	nan	0.380	0.801	1.129	0.744	0.447	0.504	0.187	0.275	0.437	2.931	1.832	0.377	nan	0.911	0.563	0.036	0.157	0.194	0.148	0.230	0.383	0.040	0.050	0.092	0.082
5284	chr22	42707193	42727046	+	0	NA	Intergenic	Intergenic	-37186	NM_005650	6942	Hs.475018	NM_005650	ENSG00000100207	TCF20	AR1|SPBP|TCF-20	transcription factor 20	protein-coding	0.886	nan	0.956	0.670	1.741	0.885	1.648	0.079	0.033	0.440	0.200	1.437	6.088	0.165	0.071	1.508	2.340	0.401	0.528	2.144	1.673	3.911	0.934	0.250	0.311	0.726	nan	2.260	2.365	nan	0.641	0.936	1.692	3.075	3.537	0.265	0.484	1.775	0.950	2.708	1.060	0.878	0.088	1.648	1.437	0.464	2.332	1.309	0.155
4338	chr2	50832443	50845824	+	0	NA	intron (NM_001135659, intron 9 of 23)	intron (NM_001135659, intron 9 of 23)	84267	NR_130470	103504737		NR_130470	ENSG00000216191	MIR8485	hsa-mir-8485	microRNA 8485	ncRNA	1.114	nan	1.498	0.080	0.376	0.239	0.179	0.105	0.085	0.191	0.262	0.312	0.383	0.049	0.097	0.293	0.269	0.342	0.408	0.411	0.522	0.360	0.127	0.391	0.380	2.818	3.792	0.429	0.417	1.418	1.014	0.153	0.243	0.365	0.380	0.605	1.179	0.380	0.332	0.045	0.173	0.092	0.278	0.179	0.312	0.825	0.069	0.029	0.201
3037	chr16	4320399	4324057	+	0	NA	intron (NM_003223, intron 1 of 6)	CpG	773	NM_003223	7023	Hs.513305	NM_003223	ENSG00000090447	TFAP4	AP-4|bHLHc41	transcription factor AP-4	protein-coding	7.821	nan	7.821	10.535	7.024	3.768	5.760	2.509	0.438	5.025	1.936	9.654	14.877	5.158	0.079	11.641	9.692	3.208	4.445	11.350	8.878	14.271	5.636	11.297	11.426	4.543	nan	10.599	15.072	15.420	20.063	3.147	5.153	9.981	7.610	11.168	10.042	4.498	2.429	6.602	7.705	2.148	4.941	5.760	9.654	2.599	3.731	3.055	4.848
5099	chr21	34774648	34801077	+	0	NA	intron (NM_001329128, intron 3 of 7)	intron (NM_001329128, intron 3 of 7)	12660	NM_001329128	3460	Hs.634632	NM_005534	ENSG00000159128	IFNGR2	AF-1|IFGR2|IFNGT1|IMD28	interferon gamma receptor 2	protein-coding	1.324	0.834	1.906	0.649	1.257	0.662	0.721	0.680	0.164	0.350	0.132	1.005	1.663	0.775	0.108	0.951	1.280	1.139	1.694	1.281	1.335	0.666	0.231	1.090	1.045	0.779	1.176	3.765	5.161	1.184	1.152	0.973	1.671	0.589	0.605	0.880	1.270	nan	0.700	0.200	2.005	0.118	0.328	0.721	1.005	0.159	0.476	0.837	0.343
7161	chr7	11736984	11755056	+	0	NA	intron (NM_015204, intron 1 of 26)	intron (NM_015204, intron 1 of 26)	125804	NM_015204	221981	Hs.120855	NM_015204	ENSG00000005108	THSD7A	-	thrombospondin type 1 domain containing 7A	protein-coding	nan	1.043	nan	0.083	0.993	0.497	0.226	0.113	0.108	0.026	0.042	0.165	0.560	0.077	0.142	nan	0.389	0.197	0.272	0.455	0.557	0.215	0.126	0.407	0.371	3.902	3.908	0.397	0.410	0.229	0.114	0.272	0.390	0.263	0.259	0.259	0.426	0.474	0.459	0.012	0.640	0.058	0.128	0.226	0.165	0.011	0.129	0.082	0.096
7465	chr7	123670262	123688169	+	0	NA	Intergenic	Intergenic	-5692	NM_001136002	730130	Hs.450249	NM_001136002	ENSG00000234224	TMEM229A	-	transmembrane protein 229A	protein-coding	0.864	0.586	0.981	0.155	0.311	0.108	0.436	0.110	0.099	0.211	0.203	0.074	0.710	0.066	0.163	2.532	4.375	3.506	1.279	0.690	0.488	0.256	0.164	0.228	0.249	0.209	0.427	0.196	0.258	0.556	0.583	5.610	12.346	0.176	0.120	0.619	0.959	0.633	0.669	0.032	0.129	0.037	0.691	0.436	0.074	0.032	0.402	7.321	0.153
5366	chr3	49025465	49046116	+	0	NA	intron (NM_177938, intron 2 of 8)	intron (NM_177938, intron 2 of 8)	8449	NM_177939	54681	Hs.654944	NM_017732	ENSG00000178467	P4HTM	EGLN4|HIFPH4|P4H-TM|PH-4|PH4|PHD4	prolyl 4-hydroxylase, transmembrane	protein-coding	2.125	nan	nan	2.020	0.963	0.513	1.338	0.921	0.169	0.892	0.419	1.206	4.193	1.520	0.091	1.563	2.146	1.945	2.693	3.316	3.353	1.887	0.790	2.307	2.290	1.176	1.506	3.610	4.853	2.376	2.542	1.716	2.938	1.366	1.335	1.621	1.784	1.693	1.016	4.601	2.941	0.278	0.913	1.338	1.206	0.315	0.894	1.341	0.310
3830	chr18	55017578	55024489	+	0	NA	intron (NM_015879, intron 1 of 3)	CpG	1312	NM_015879	51046	Hs.23172	NM_015879	ENSG00000177511	ST8SIA3	SIAT8C|ST8SiaIII	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	nan	0.640	0.619	0.869	3.079	1.283	5.575	0.030	0.046	1.997	1.057	6.328	3.957	0.031	0.055	1.846	3.133	0.094	0.070	7.034	6.698	6.964	2.506	0.183	0.170	3.393	3.981	7.973	13.127	3.327	3.171	1.757	2.411	0.177	0.159	0.796	1.324	6.172	3.649	4.156	2.871	0.028	4.747	5.575	6.328	0.280	3.119	1.190	0.124
6131	chr5	1367818	1394781	+	0	NA	Intergenic	Intergenic	-1111	NR_125810	100506791	Hs.146092	NR_125810	ENSG00000250584	LINC01511	-	long intergenic non-protein coding RNA 1511	ncRNA	0.778	1.721	8.650	1.099	0.340	0.137	0.259	0.138	0.152	0.219	0.192	0.888	1.428	0.313	0.128	0.968	0.923	0.231	nan	2.700	2.187	2.686	0.719	0.099	0.123	1.386	2.199	nan	1.428	nan	1.277	0.285	0.364	0.983	0.920	0.174	0.252	1.408	nan	0.944	0.552	0.117	0.126	0.259	0.888	0.717	0.608	0.062	0.281
220	chr1	37934944	37983921	+	0	NA	non-coding (NR_073092, exon 9 of 9)	non-coding (NR_073092, exon 9 of 9)	7163	NR_049844	100847010		NR_049844	ENSG00000263675	MIR5581	-	microRNA 5581	ncRNA	1.455	nan	1.854	1.731	0.721	0.308	0.687	0.919	0.211	0.749	0.403	1.442	1.433	0.643	0.171	0.830	1.299	1.232	1.851	1.341	1.382	nan	0.487	1.373	1.403	1.486	2.052	7.926	7.886	nan	0.933	1.122	1.906	0.567	0.598	0.945	1.935	1.359	nan	0.561	0.467	0.134	0.209	0.687	1.442	0.340	0.719	0.420	0.486
7283	chr7	51410916	51425909	+	0	NA	Intergenic	Intergenic	-33854	NM_001287436	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding	nan	1.268	2.972	1.077	0.754	0.417	0.177	0.089	0.173	0.583	0.296	1.482	1.839	0.102	0.134	2.574	2.916	0.223	0.475	2.804	2.805	3.370	0.667	0.142	0.150	0.793	1.183	3.784	3.689	1.318	1.128	0.951	1.653	2.774	3.744	0.256	0.521	1.868	1.148	0.230	1.344	0.634	1.950	0.177	1.482	0.383	0.107	0.796	0.081
6065	chr4	166297019	166327327	+	0	NA	intron (NM_001873, intron 1 of 8)	intron (NM_001873, intron 1 of 8)	4779	NR_030304	693163		NR_030304	ENSG00000207559	MIR578	MIRN578|hsa-mir-578	microRNA 578	ncRNA	nan	nan	nan	1.244	1.896	0.956	0.751	0.360	0.122	1.344	1.060	1.594	7.622	0.075	0.081	0.326	0.452	0.607	0.902	1.445	1.851	1.449	0.652	0.266	0.264	3.976	4.425	3.175	3.581	3.345	3.211	0.409	0.787	1.818	1.765	1.751	2.860	1.479	0.813	3.430	3.635	0.540	0.705	0.751	1.594	0.643	1.650	0.222	1.336
6882	chr6	101838200	101843661	+	0	NA	Intergenic	Intergenic	-5931	NM_175768	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding	1.464	nan	nan	1.027	0.535	0.418	0.954	0.620	0.089	0.379	0.108	0.175	3.112		0.133	3.288	3.799	9.505	6.201	1.554	nan	1.045	0.228	1.221	1.263	2.035	2.415	0.538	0.879	nan	1.601	1.713	4.089	3.402	2.433	0.482	0.853	0.556	0.513	0.590	0.661	1.117	0.334	0.954	0.175	0.230	2.067	1.092	0.246
5386	chr3	60368403	60411479	+	0	NA	intron (NM_002012, intron 5 of 9)	MER51A|LTR|ERV1	213662	NR_128708	103504735		NR_128708	ENSG00000281426	MIR548BB	MI0029321|hsa-mir-548bb	microRNA 548bb	ncRNA	0.588	nan	0.714	0.147	0.383	0.235	0.247	0.055	0.030	0.150	0.126	0.209	0.235	0.020	0.045	0.288	0.236	0.253	0.287	0.279	0.301	3.753	1.572	0.119	0.171	0.350	0.563	0.271	0.322	0.306	0.168	0.123	0.202	0.337	0.272	0.165	nan	0.628	0.460	0.032	0.056	0.062	0.180	0.247	0.209	0.041	0.016	0.066	0.043
7460	chr7	121564385	121586449	+	0	NA	intron (NM_002851, intron 2 of 29)	intron (NM_002851, intron 2 of 29)	62258	NM_002851	5803	Hs.489824	NM_002851	ENSG00000106278	PTPRZ1	HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan	protein tyrosine phosphatase, receptor type Z1	protein-coding	0.920	0.704	0.904	0.298	7.186	3.693	0.096	0.127	0.152	0.598	0.403	2.765	0.547	0.034	0.169	0.443	0.241	0.232	0.344	0.659	0.694	5.266	1.849	0.254	0.252	0.726	0.973	0.182	0.204	0.382	0.195	0.140	0.342	3.386	3.168	0.407	1.043	3.233	1.398	0.033	0.096	0.751	0.598	0.096	2.765	0.014	0.119	0.093	0.106
8386	chrX	48322344	48336304	+	0	NA	promoter-TSS (NM_033518)	promoter-TSS (NM_033518)	-680	NM_033518	92745	Hs.195155	NM_033518	ENSG00000017483	SLC38A5	JM24|SN2|SNAT5|pp7194	solute carrier family 38 member 5	protein-coding	1.554	1.075	nan	0.534	0.444	0.240	0.322	0.346	0.011	0.328	0.250	0.454	1.379	0.356	0.062	0.477	0.540	0.844	1.324	1.383	1.333	1.609	0.532	1.621	1.575	0.904	1.212	1.177	1.922	5.868	7.245	1.000	1.242	0.901	0.863	3.426	8.787	0.701	0.463	0.195	0.255	0.109	0.260	0.322	0.454	0.180	0.306	0.291	5.175
4612	chr2	177319334	177339044	+	0	NA	Intergenic	Intergenic	136591	NR_031648	100302142		NR_031648	ENSG00000283203	MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA	1.085	1.374	1.047	0.333	0.889	0.499	0.201	0.110	0.057	0.197	0.136	0.361	3.092	0.038	0.102	0.421	0.433	0.384	0.446	0.511	0.500	1.392	0.634	0.355	0.357	0.306	0.460	1.002	0.878	1.119	0.826	0.488	0.750	0.736	0.707	0.968	2.499	1.097	0.668	3.178	1.157	0.092	0.053	0.201	0.361	0.227	0.858	0.607	0.263
4170	chr2	938351	959955	+	0	NA	intron (NM_018968, intron 1 of 16)	intron (NM_018968, intron 1 of 16)	-2075	NR_136151	101060391	Hs.120377	NR_136151		LOC101060391	-	uncharacterized LOC101060391	ncRNA	0.468	0.446	0.437	0.069	0.375	0.215	0.522	0.038	0.104	0.858	0.565	1.704	3.538	0.080	0.125	0.208	0.178	0.261	0.435	5.845	4.890	0.105	0.084	0.506	0.474	0.154	0.264	2.190	2.821	0.479	0.402	0.501	0.866	0.061	0.053	0.068	0.164	1.875	1.119	2.488	5.065	0.004	0.011	0.522	1.704	0.463	0.033	0.423	0.023
4017	chr19	31293988	31305537	+	0	NA	Intergenic	Intergenic	436462	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding	0.644	1.090	0.536	0.070	0.121	0.129	0.445	0.116	0.125	0.027	0.072	3.700	0.434	0.048	0.067	1.167	1.774	0.763	0.625	0.210	0.265	0.133	0.038	0.086	0.061	0.187	0.292	0.138	0.151	nan	0.072	0.550	0.984	0.028	0.100	0.258	0.466	0.554	0.477	0.715	0.393	0.008		0.445	3.700		0.035	0.631	0.156
7921	chr8	127408251	127443551	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	88161	NR_125421	101927657	Hs.552133	NR_125421	ENSG00000244791	LOC101927657	-	uncharacterized LOC101927657	ncRNA	nan	nan	nan	2.033	0.315	0.127	0.400	0.100	0.132	0.512	0.442	4.161	nan	0.028	0.079	0.331	0.242	0.317	0.719	5.850	6.955	2.657	1.059	nan	nan	5.297	8.423	2.162	2.438	85.501	67.367	0.147	0.233	1.220	0.799	0.491	1.376	2.200	1.124	0.033	0.360	0.355	0.038	0.400	4.161	0.030	0.205	0.039	0.347
6814	chr6	53185760	53225871	+	0	NA	intron (NM_001242830, intron 1 of 6)	intron (NM_001242830, intron 1 of 6)	-3400	NR_046241	647190	Hs.520189	NR_046241		RPS16P5	RPS16_3_702	ribosomal protein S16 pseudogene 5	pseudo	1.998	1.620	nan	1.491	1.207	0.652	1.299	1.177	0.169	0.552	0.288	1.692	2.049	0.755	0.120	0.970	1.187	0.803	1.377	1.944	1.631	1.901	0.885	1.885	1.878	1.171	1.503	4.181	5.419	1.227	1.106	0.538	0.930	1.483	1.333	0.962	1.490	1.283	0.815	0.925	0.737	0.365	0.578	1.299	1.692	0.258	0.736	0.369	0.495
8261	chr9	124940842	124965232	+	0	NA	intron (NM_198469, intron 4 of 4)	intron (NM_198469, intron 4 of 4)	30850	NM_198469	254956	Hs.71428	NM_198469	ENSG00000185681	MORN5	C9orf113|C9orf18	MORN repeat containing 5	protein-coding	nan	nan	0.643	0.716	4.840	2.650	0.215	0.092	0.093	0.168	0.177	0.952	nan	0.058	0.100	0.300	0.583	0.227	0.345	1.510	1.526	0.933	0.450	0.446	0.442	0.109	nan	0.471	0.671	0.613	0.454	0.258	0.310	0.303	0.261	0.177	0.259	nan	1.149	2.671	1.110	0.027	0.107	0.215	0.952	0.064	0.403	0.049	0.030
5253	chr22	36723065	36730498	+	0	NA	intron (NM_002473, intron 3 of 40)	intron (NM_002473, intron 3 of 40)	-43828	NR_106877	102465491		NR_106877	ENSG00000278420	MIR6819	hsa-mir-6819	microRNA 6819	ncRNA	3.322	nan	0.811	0.341	1.629	0.908	7.256	2.614	0.254	0.849	0.479	6.051	2.183	0.470	0.125	1.200	2.277	1.751	6.038	1.151	1.218	0.656	0.405	0.837	1.083	0.994	nan	5.347	6.312	nan	0.487	1.790	3.908	0.316	0.385	0.144	0.387	1.302	0.709	3.152	0.805	0.101	0.074	7.256	6.051	3.081	4.554	4.083	0.100
5269	chr22	39265391	39279573	+	0	NA	Intergenic	MER4A|LTR|ERV1	-4143	NM_001303494	23466	Hs.592201	NM_014292	ENSG00000183741	CBX6	-	chromobox 6	protein-coding	2.161	nan	1.031	2.690	3.108	1.612	3.162	0.897	0.192	0.574	0.244	6.927	6.396	2.296	0.151	1.521	1.724	1.138	1.774	4.946	4.953	3.940	2.638	0.440	0.500	1.264	nan	3.510	6.225	nan	2.424	1.124	1.637	2.985	3.786	0.770	1.133	1.316	0.742	1.696	2.430	1.006	0.402	3.162	6.927	0.885	1.291	0.607	0.313
6483	chr5	142773669	142786568	+	0	NA	exon (NM_000176, exon 2 of 9)	exon (NM_000176, exon 2 of 9)	3136	NM_000176	2908	Hs.122926	NM_000176	ENSG00000113580	NR3C1	GCCR|GCR|GCRST|GR|GRL	nuclear receptor subfamily 3 group C member 1	protein-coding	nan	2.313	2.383	2.069	1.390	0.823	1.117	2.652	0.225	0.753	0.267	1.663	12.351	0.866	0.085	0.187	0.091	0.548	0.759	4.222	3.754	2.584	1.335	3.672	3.520	5.362	6.359	4.879	6.085	5.201	5.591	1.845	1.968	2.745	2.707	2.262	3.832	1.640	0.884	2.124	4.691	0.913	1.494	1.117	1.663	1.268	4.282	0.762	0.903
3795	chr18	47369834	47386357	+	0	NA	TTS (NR_117096)	TTS (NR_117096)	37702	NR_117096	103091864	Hs.646459	NR_117096	ENSG00000267322	SNHG22	SCARNA17|SCARNA17HG	small nucleolar RNA host gene 22	ncRNA	nan	1.438	1.311	0.702	0.512	0.222	2.060	0.095	0.079	0.161	0.061	0.326	1.440	0.040	0.055	0.441	0.419	0.655	1.598	1.258	1.287	5.838	1.686	0.268	0.243	0.309	0.609	1.356	1.311	0.847	0.867	0.316	0.445	1.412	2.261	0.211	nan	2.629	2.189	1.925	0.255	0.306	0.179	2.060	0.326	0.597	0.258	0.144	0.112
1448	chr11	62301028	62324462	+	0	NA	intron (NM_001620, intron 1 of 4)	intron (NM_001620, intron 1 of 4)	414	NM_001346446	79026	Hs.502756	NM_001620	ENSG00000124942	AHNAK	AHNAKRS|PM227	AHNAK nucleoprotein	protein-coding	nan	1.072	1.069	0.684	0.614	0.246	1.937	1.404	0.263	0.818	0.195	0.720	1.384	2.132	0.144	1.059	1.477	0.589	1.266	1.291	1.357	2.630	0.982	1.317	1.392	0.495	0.984	3.080	3.137	0.986	0.957	2.611	4.938	1.735	1.329	0.952	1.867	0.776	0.672	2.332	0.830	0.301	0.129	1.937	0.720	0.111	0.190	3.367	0.522
8086	chr9	21982690	21998051	+	0	NA	intron (NM_058195, intron 1 of 2)	intron (NM_058195, intron 1 of 2)	4120	NM_058195	1029	Hs.512599	NM_000077	ENSG00000147889	CDKN2A	ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16	cyclin dependent kinase inhibitor 2A	protein-coding	3.229	8.233	nan	3.673	4.759	2.517	2.734	3.234	0.169	2.825	1.470	3.725	7.416	2.199	0.116	2.312	2.936	4.838	8.079	8.164	7.300	6.835	3.914	3.785	3.757	5.082	5.903	4.006	6.665	6.597	6.721	3.376	7.225	4.558	4.743	2.386	2.133	5.046	2.979	5.477	5.691	1.059	3.409	2.734	3.725	0.570	1.387	2.770	0.996
3146	chr16	54959715	54966556	+	0	NA	promoter-TSS (NM_001308963)	promoter-TSS (NM_001308963)	-34	NR_034105	643911	Hs.237396	NM_001308963		CRNDE	CRNDEP|LINC00180|NCRNA00180|PNAS-108|lincIRX5	colorectal neoplasia differentially expressed (non-protein coding)	protein-coding	6.624	nan	6.821	6.110	2.623	1.431	7.502	1.985	0.140	0.272	0.059	4.236	12.761	2.804	0.073	1.735	1.831	1.458	1.788	8.238	4.999	7.593	3.553	8.011	7.340	1.877	nan	nan	nan	nan	1.416	0.428	0.497	2.004	2.281	0.805	nan	nan	1.079	3.381	2.504	0.485	3.357	7.502	4.236	0.866	2.349	0.158	0.054
4913	chr20	30669307	30680535	+	0	NA	intron (NM_002110, intron 9 of 12)	intron (NM_002110, intron 9 of 12)	-22388	NM_014742	9777	Hs.654665	NM_014742	ENSG00000101337	TM9SF4	dJ836N17.2	transmembrane 9 superfamily member 4	protein-coding	0.938	0.968	0.666	0.228	0.249	0.100	0.091	0.187	0.143	0.068	0.053	0.235	0.521	0.236	0.115	4.724	4.959	7.362	1.898	0.331	nan	1.355	0.413	0.211	0.240	0.390	0.693	0.337	0.502	0.607	0.364	1.696	3.050	0.149	0.260	0.226	nan	0.355	0.334	0.025	0.127	0.034	0.036	0.091	0.235	0.218	0.051	0.963	0.073
1573	chr11	92331693	92348493	+	0	NA	intron (NM_001008781, intron 2 of 24)	intron (NM_001008781, intron 2 of 24)	254831	NM_001008781	120114	Hs.98523	NM_001008781	ENSG00000165323	FAT3	CDHF15|CDHR10|hFat3	FAT atypical cadherin 3	protein-coding	0.686	nan	0.543	0.255	0.253	0.162	0.236	0.112	0.067	0.056	0.104	0.095	0.474	0.058	0.108	9.059	5.908	1.589	nan	0.383	0.560	0.150	0.110	13.371	14.016	0.738	0.994	1.225	0.807	0.381	0.185	6.307	7.142	0.553	0.776	0.298	nan	0.855	0.608	0.165	0.154	0.068	0.181	0.236	0.095	0.006	0.054	2.708	0.160
5484	chr3	115738171	115789560	+	0	NA	intron (NM_002338, intron 2 of 6)	intron (NM_002338, intron 2 of 6)	-315006	NR_109998	101926903	Hs.26479	NR_109998	ENSG00000240922	LSAMP-AS1	-	LSAMP antisense RNA 1	ncRNA	1.586	nan	0.713	0.112	0.763	0.399	0.710	0.217	0.153	0.141	0.156	0.128	0.216	0.072	0.041	0.875	1.112	0.528	0.336	0.365	nan	0.405	0.194	0.384	0.442	nan	4.994	0.258	0.247	1.457	1.331	0.172	0.317	0.323	0.403	0.400	0.978	0.562	0.569	0.090	0.078	0.089	1.277	0.710	0.128	0.477	0.036	0.148	0.211
2020	chr12	70634505	70643072	+	0	NA	intron (NR_037615, intron 1 of 16)	intron (NR_037615, intron 1 of 16)	1294	NR_037615	4848	Hs.133350	NM_014515	ENSG00000111596	CNOT2	CDC36|HSPC131|NOT2|NOT2H	CCR4-NOT transcription complex subunit 2	protein-coding	nan	2.463	2.270	3.444	3.694	1.983	3.263	2.860	0.319	2.382	1.250	3.324	6.857	2.085	0.093	3.666	3.577	6.976	8.098	7.828	7.351	4.802	2.342	15.219	16.241	3.701	4.590	nan	10.072	4.557	4.986	3.327	6.235	2.941	3.325	4.094	3.305	nan	1.356	1.070	3.879	0.614	1.507	3.263	3.324	0.803	1.906	1.580	1.004
7155	chr7	9217818	9243527	+	0	NA	Intergenic	Intergenic	-443228	NR_002790	168741	Hs.545134	NR_002790		PER4	-	period circadian clock 3 pseudogene	pseudo	1.362	1.322	1.607	0.119	0.250	0.187	0.260	0.085	0.129	0.130	0.146	0.175	nan	0.051	0.175	0.610	0.472	0.184	nan	0.401	0.487	nan	0.354	0.438	0.444	3.055	3.421	nan	0.348	0.445	0.270	0.139	0.214	2.789	3.452	3.985	6.920	0.346	0.337	0.024	0.045	0.660	3.941	0.260	0.175	0.053	0.055	0.054	1.205
3770	chr18	42582093	42599929	+	0	NA	intron (NM_015559, intron 4 of 5)	intron (NM_015559, intron 4 of 5)	-40880	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA	nan	1.172	1.253	0.515	0.765	0.255	3.539	0.567	0.063	0.624	0.441	1.231	1.758	0.018	0.065	0.513	0.481	0.249	0.630	1.478	1.410	1.792	0.640	0.057	0.068	0.994	1.413	0.472	0.609	0.424	0.232	0.343	0.543	1.593	1.821	0.183	nan	4.105	2.588	2.176	0.359	0.300	0.371	3.539	1.231	0.315	0.366	0.303	0.084
3524	chr17	70921411	70968742	+	0	NA	intron (NM_001159770, intron 4 of 9)	intron (NM_001159770, intron 4 of 9)	143777	NM_139177	201266	Hs.221127	NM_139177	ENSG00000133195	SLC39A11	C17orf26|ZIP11	solute carrier family 39 member 11	protein-coding	1.470	0.995	1.685	0.137	0.587	0.330	0.347	0.142	0.106	0.123	0.149	0.308	0.570	0.071	0.116	0.587	0.635	0.229	0.342	0.498	0.567	0.511	0.192	0.308	0.329	nan	2.484	0.420	0.586	6.217	6.097	0.233	0.339	0.338	0.454	2.920	6.888	nan	0.520	0.107	0.119	0.114	0.087	0.347	0.308	0.388	0.078	0.105	2.683
4485	chr2	122286607	122290556	+	0	NA	TTS (NR_023343)	TTS (NR_023343)	125	NR_023343	100151683	Hs.689638	NR_023343	ENSG00000264229	RNU4ATAC	MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC	RNA, U4atac small nuclear (U12-dependent splicing)	snRNA	4.718	nan	nan	4.198	3.440	1.815	2.519	2.785	0.863	1.396	0.860	3.788	8.531	4.330	0.214	6.625	7.281	6.575	8.493	4.678	4.745	8.942	7.484	15.965	17.234	4.091	5.040	7.281	11.416	6.358	5.818	5.023	6.034	2.652	2.965	7.226	6.571	1.512	1.084	3.002	1.080	0.314	2.203	2.519	3.788	0.760	1.907	1.641	1.158
3725	chr18	31777340	31808141	+	0	NA	intron (NM_001198546, intron 1 of 9)	MLT1E1A|LTR|ERVL-MaLR	9694	NM_001198547	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding	nan	1.018	0.860	1.700	1.016	0.624	1.812	0.054	0.078	1.028	0.755	2.356	2.932	0.144	0.081	0.862	0.725	0.548	0.570	5.522	5.004	3.484	1.805	0.372	0.374	0.701	0.925	nan	3.760	3.597	3.781	0.326	0.986	3.792	3.672	2.832	4.895	3.121	2.045	0.737	0.664	1.132	0.488	1.812	2.356	0.306	0.779	0.337	2.346
7521	chr7	141479863	141497933	+	0	NA	Intergenic	Intergenic	-1119	NM_018980	54429	Hs.675370	NM_018980	ENSG00000127366	TAS2R5	T2R5	taste 2 receptor member 5	protein-coding	0.806	0.576	0.754	0.099	0.284	0.115	0.104	0.128	0.090	0.268	0.165	0.122	0.247	0.099	0.142	1.369	1.099	0.463	0.341	0.360	0.480	0.618	0.198	21.822	23.207	0.257	0.401	0.340	0.358	0.357	0.228	0.999	1.721	0.102	0.127	0.304	0.709	0.935	nan	0.059	0.122	0.016	0.071	0.104	0.122		0.090	0.759	0.061
1772	chr12	3470845	3481796	+	0	NA	Intergenic	Intergenic	-14195	NM_001256536	56341	Hs.504530	NM_019854	ENSG00000111218	PRMT8	HRMT1L3|HRMT1L4	protein arginine methyltransferase 8	protein-coding	1.198	nan	nan	1.549	0.490	0.251	1.226	0.088	0.089	0.658	0.437	0.527	8.205	0.090	0.115	0.388	0.343	0.106	0.136	nan	0.765	4.266	1.267	0.717	0.645	0.212	0.385	4.339	5.631	0.584	0.568	0.616	1.034	0.782	0.647	0.638	nan	1.601	0.942	1.268	0.521	0.112	0.151	1.226	0.527	0.273	0.298	0.145	0.134
418	chr1	99955472	99982263	+	0	NA	Intergenic	Intergenic	-15507	NR_125951	101928270	Hs.576048	NR_125951	ENSG00000224445	LINC01708	-	long intergenic non-protein coding RNA 1708	ncRNA	nan	nan	0.986	0.065	0.173	0.120	0.110	0.167	0.102	0.029	0.068	0.134	0.337	0.069	0.088	0.327	0.184	0.344	0.395	0.332	nan	0.145	0.078	0.235	0.221	0.448	nan	0.380	0.411	nan	0.870	0.148	0.220	0.055	0.061	1.637	6.801	0.542	0.519	0.035	0.090	0.014	0.033	0.110	0.134	0.164	0.039	0.041	2.350
2324	chr13	64647274	64654613	+	0	NA	Intergenic	LTR12C|LTR|ERV1	-232685	NR_130763	102723968	Hs.551671	NR_130763	ENSG00000219926	LOC102723968	-	uncharacterized LOC102723968	ncRNA	nan	0.810	nan	0.227	0.081	0.091	0.299	0.276	0.065	0.043	0.056	0.113	0.160	0.015	0.064	0.426	0.271	0.102	0.117	0.156	0.268	10.667	4.559	0.112	0.097	1.445	1.415	0.128	0.128	0.328	0.176	1.229	1.978	0.130	0.122	0.242	0.373	0.120	0.064	0.045	4.904	0.053	0.096	0.299	0.113	0.147	1.759	0.837	0.067
933	chr1	234834006	234892913	+	0	NA	intron (NR_038856, intron 2 of 2)	intron (NR_038856, intron 2 of 2)	3670	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA	3.691	3.958	2.638	3.897	3.995	2.096	3.871	0.920	0.213	2.065	0.853	3.784	6.922	0.142	0.102	1.569	2.426	1.851	4.348	5.573	5.480	nan	1.873	0.698	0.796	2.756	3.522	nan	3.927	2.916	2.996	0.751	0.996	2.302	2.668	1.310	3.892	nan	1.221	3.339	2.277	0.791	1.479	3.871	3.784	0.915	1.786	0.913	1.689
4174	chr2	2287972	2303123	+	0	NA	intron (NM_001329851, intron 1 of 23)	intron (NM_001329851, intron 1 of 23)	-27457	NR_024468	730811	Hs.629472	NR_024468	ENSG00000225619	MYT1L-AS1	-	MYT1L antisense RNA 1	ncRNA	0.596	0.738	0.601	0.147	0.493	0.295	0.430	0.069	0.054	0.433	0.321	0.649	1.995	0.050	0.107	0.391	0.546	0.343	0.367	0.731	0.869	0.995	0.380	0.237	0.174	0.778	1.045	1.086	1.113	0.693	0.465	0.320	0.360	0.390	0.447	0.572	1.060	1.353	0.798	4.227	0.404	0.070	0.134	0.430	0.649	0.258	0.323	0.084	0.017
2217	chr12	132964362	133044947	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-62503	NM_001142641	57666	Hs.411138	NM_001142641	ENSG00000112787	FBRSL1	-	fibrosin like 1	protein-coding	1.160	0.963	1.003	0.258	1.546	0.825	1.029	0.049	0.056	0.222	0.136	2.809	0.972	0.132	0.103	0.220	0.266	0.134	0.252	3.150	2.797	0.645	0.199	0.234	0.249	0.234	0.401	nan	0.397	0.827	0.800	0.351	0.352	0.737	0.808	1.175	2.459	1.276	0.874	1.613	1.658	0.107	0.425	1.029	2.809	0.477	0.779	0.077	0.553
2333	chr13	69987827	69993027	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	193949	NR_125752	103689913	Hs.585628	NR_125752		LINC00383	LINC00401	long intergenic non-protein coding RNA 383	ncRNA	nan	0.903	0.528	0.069	0.298	0.123	0.295	0.028	0.153	0.061	0.048	0.047	0.300	0.043	0.070	1.221	0.541	9.234	3.318	0.399	0.345	nan	0.167	0.474	0.434	0.121	0.163	0.195	0.167	nan	0.255	0.623	0.493	0.024	0.030	0.337	nan	0.098	0.219	0.010	0.018		0.167	0.295	0.047			0.178	0.047
6386	chr5	98103149	98112196	+	0	NA	intron (NR_033932, intron 1 of 1)	intron (NR_033932, intron 1 of 1)	1116	NR_033932	503569	Hs.586188	NR_033932	ENSG00000246763	RGMB-AS1	-	RGMB antisense RNA 1	ncRNA	nan	2.898	2.855	1.728	3.178	1.772	2.623	2.884	0.342	1.391	0.840	1.666	11.752	2.061	0.116	0.657	0.476	5.166	4.638	4.672	3.062	2.606	0.643	1.799	1.942	3.707	4.758	2.546	3.908	2.720	4.125	0.294	0.825	11.683	8.748	1.571	nan	1.676	1.055	1.589	5.279	2.784	2.281	2.623	1.666	0.825	2.358	0.174	0.725
6020	chr4	133264597	133267949	+	0	NA	Intergenic	L1PA10|LINE|L1	-245971	NR_126401	104355285	Hs.123483	NR_126401	ENSG00000251398	LINC01256	TCONS_l2_00021715	long intergenic non-protein coding RNA 1256	ncRNA	nan	nan	0.670	3.775	0.162		0.076	2.562	0.190	0.090	0.172	13.494	0.200	0.065	0.090	3.857	5.603	0.200	0.276	0.161	0.101	11.137	8.160	0.087	0.100	4.000	4.708	5.899	10.078	0.217	0.098	1.696	1.491	0.072	0.046	0.111	nan	0.633	0.215	0.018	4.121	0.029	2.252	0.076	13.494	0.028	0.090	0.740	
7053	chr6	154549046	154571525	+	0	NA	intron (NM_001130700, intron 5 of 11)	intron (NM_001130700, intron 5 of 11)	90930	NM_001130699	26034	Hs.146100	NM_015553	ENSG00000074706	IPCEF1	PIP3-E	interaction protein for cytohesin exchange factors 1	protein-coding	nan	1.227	0.568	0.136	0.367	0.157	0.387	0.133	0.079	0.035	0.084	0.207	0.260	0.049	0.127	0.420	0.232	10.084	9.213	0.751	nan	0.890	0.307	3.075	3.066	0.095	0.170	0.385	0.423	0.777	0.585	0.149	0.282	0.138	0.114	0.179	nan	0.305	0.291	0.017	0.130	0.013	0.059	0.387	0.207	0.009	0.065	0.013	0.081
2052	chr12	82714875	82735437	+	0	NA	Intergenic	Intergenic	27043	NM_014167	29080	Hs.582627	NM_014167	ENSG00000133773	CCDC59	BR22|HSPC128|TAP26	coiled-coil domain containing 59	protein-coding	0.735	0.876	0.621	0.318	0.341	0.156	0.881	0.196	0.086	0.618	0.550	0.590	0.526	0.021	0.102	0.303	0.204	0.208	0.350	1.586	2.393	1.398	0.454	0.246	0.271	0.921	1.115	0.613	0.706	0.556	0.333	0.144	0.194	3.820	4.874	0.181	0.309	1.605	0.893	0.019	0.121	1.502	0.112	0.881	0.590	0.103	0.103	0.048	0.078
4785	chr2	239400875	239423429	+	0	NA	Intergenic	Intergenic	51988	NR_037809	151171	Hs.652076	NR_037809	ENSG00000225493	LINC01107	-	long intergenic non-protein coding RNA 1107	ncRNA	0.945	nan	0.792	0.393	4.210	2.161	0.633	0.027	0.007	0.444	0.316	6.380	3.644	0.091	0.080	1.676	1.826	0.910	0.612	2.701	2.918	2.235	0.647	0.257	0.231	0.355	0.655	0.672	nan	0.361	0.366	0.671	0.611	0.334	0.288	0.123	0.178	0.501	0.380	0.287	0.051	0.097	0.797	0.633	6.380	0.094	0.121	0.111	0.027
7423	chr7	106228945	106242154	+	0	NA	Intergenic	MIR|SINE|MIR	66085	NM_175884	168455	Hs.29692	NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71-like	protein-coding	nan	0.916	3.638	0.852	0.481	0.279	0.219	0.220	0.037	0.989	0.524	1.493	0.620	0.065	0.166	0.454	0.303	0.638	0.557	0.868	0.947	5.776	2.345	0.286	0.312	0.351	0.567	2.385	2.659	0.647	0.465	0.297	0.461	4.046	5.913	0.320	nan	2.595	1.678	0.216	0.762	0.842	0.237	0.219	1.493	0.119	0.138	0.142	0.084
2868	chr15	47143667	47165086	+	0	NA	Intergenic	THE1D|LTR|ERVL-MaLR	-322027	NM_001198999	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding	0.728	0.629	nan	0.164	4.289	2.383	0.162	0.081	0.038	1.070	0.844	0.650	0.254	0.080	0.068	0.290	0.195	0.228	0.216	0.419	0.479	1.824	0.926	0.113	0.152	0.209	nan	0.209	0.214	0.715	0.465	0.122	0.160	0.814	0.618	0.359	0.763	0.876	0.617	0.037	0.295	0.169	0.152	0.162	0.650	0.083	0.019	0.059	0.093
5357	chr3	37976201	37989960	+	0	NA	intron (NM_001008392, intron 1 of 7)	AluSz6|SINE|Alu	-27815	NR_029499	407015		NR_029499	ENSG00000199075	MIR26A1	MIR26A|MIRN26A1|mir-26a-1	microRNA 26a-1	ncRNA	1.018	0.563	1.158	0.095	0.138	0.093	0.087	1.287	0.211	0.069	0.024	0.099	0.540	0.107	0.093	0.316	0.256	2.208	7.502	0.279	0.328	0.095	0.047	0.169	0.212	0.726	nan	0.295	0.304	2.073	2.261	0.149	0.159	0.036	0.070	0.415	0.877	0.342	0.397	0.024	0.058		0.041	0.087	0.099	0.028	0.022	0.035	0.811
2503	chr14	26741625	26757441	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	317427	NM_006491	4857	Hs.31588	NM_002515	ENSG00000139910	NOVA1	Nova-1	NOVA alternative splicing regulator 1	protein-coding	nan	0.876	0.861	6.560	0.295	0.162	0.241	0.224	0.163	0.584	0.353	0.826	8.532	0.062	0.108	0.217	0.163	0.321	0.479	0.689	0.807	7.574	2.813	0.756	0.813	1.560	1.980	2.027	nan	0.675	0.298	0.166	0.261	0.966	1.949	0.190	0.372	0.889	0.713	0.160	0.186	0.018	0.276	0.241	0.826	0.031	0.885	0.066	0.055
4100	chr19	45593735	45643583	+	0	NA	intron (NM_019121, intron 1 of 12)	MIR3|SINE|MIR	22228	NM_019121	284352	Hs.285363	NM_019121	ENSG00000104866	PPP1R37	LRRC68	protein phosphatase 1 regulatory subunit 37	protein-coding	2.286	1.835	3.312	1.505	4.587	2.297	1.534	0.368	0.090	1.223	0.874	4.306	1.249	0.624	0.125	1.141	1.321	1.127	1.625	5.115	5.325	4.632	1.556	2.312	2.411	0.845	1.353	3.735	4.179	1.783	1.523	1.353	1.845	2.738	2.672	1.164	1.635	2.135	1.247	1.422	4.126	0.970	0.732	1.534	4.306	0.427	0.688	0.774	0.458
388	chr1	85982878	85996763	+	0	NA	intron (NM_001134445, intron 1 of 6)	L2c|LINE|L2	54226	NM_001134445	23576	Hs.713411	NM_012137	ENSG00000153904	DDAH1	DDAH|DDAH-1|DDAHI|HEL-S-16	dimethylarginine dimethylaminohydrolase 1	protein-coding	1.711	nan	nan	0.146	0.398	0.163	0.443	1.402	0.210	0.203	0.148	0.172	0.954	7.167	0.354	0.664	0.370	0.608	1.500	0.662	0.835	0.333	0.143	0.495	0.443	0.467	0.861	0.555	0.773	0.698	0.248	0.554	0.738	0.127	0.238	0.476	1.088	0.883	0.957	0.036	0.211	0.033	0.102	0.443	0.172	0.014	0.088	0.099	0.358
5350	chr3	29439901	29626269	+	0	NA	intron (NM_001003793, intron 3 of 14)	GA-rich|Low_complexity|Low_complexity	210282	NM_001177711	27303	Hs.221436	NM_014483	ENSG00000144642	RBMS3	-	RNA binding motif single stranded interacting protein 3	protein-coding	0.537	0.783	0.538	0.121	0.159	0.099	0.089	0.513	0.092	0.050	0.052	0.124	0.486	2.784	0.127	0.195	0.142	0.575	1.086	0.254	0.326	0.112	0.060	0.116	0.118	0.300	0.447	0.280	0.291	nan	0.334	0.101	0.177	0.125	0.156	0.205	0.373	0.329	0.313	0.148	0.054	0.027	0.074	0.089	0.124	0.041	0.089	0.045	0.090
5053	chr20	62723205	62734923	+	0	NA	intron (NM_001318855, intron 1 of 2)	intron (NM_001318855, intron 1 of 2)	5023	NM_001318855	4987	Hs.2859	NM_000913	ENSG00000125510	OPRL1	KOR-3|NOCIR|NOP|NOPr|OOR|ORL1	opioid related nociceptin receptor 1	protein-coding	1.574	1.105	2.024	0.262	4.254	1.949	0.427	0.096	0.041	0.442	0.315	2.099	1.422	0.692	0.065	1.947	nan	0.283	0.334	3.220	2.550	1.134	0.402	0.568	0.735	0.561	1.020	0.290	0.440	0.774	0.842	0.703	0.766	0.602	0.304	0.739	0.872	2.978	1.946	1.820	0.754	0.074	0.263	0.427	2.099	0.566	3.574	0.237	0.314
5888	chr4	49098763	49105798	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	113621	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding	15.428	16.470	nan	6.635	9.632	5.017	7.734	3.501	20.623	3.936	9.627	2.725	11.861	1.969	8.874	6.268	2.589	2.551	3.402	6.770	10.109	2.478	1.793	3.719	3.503	5.880	9.060	3.396	3.715	10.245	2.177	2.347	3.782	2.554	4.711	2.961	5.341	2.863	4.231	1.199	5.614	3.233	2.417	7.734	2.725	1.572	1.560	1.514	2.283
4190	chr2	5453377	5458025	+	0	NA	Intergenic	Intergenic	375549	NR_110580	102723818	Hs.128107	NR_110580		LINC01248	-	long intergenic non-protein coding RNA 1248	ncRNA	2.056	0.841	1.872	0.247	1.234	0.952	0.701	0.096	0.072	0.305	0.244	1.122	1.074	0.046	0.110	0.410	0.647	0.343	1.873	7.935	6.283	1.589	0.456	0.020	0.096	0.367	0.571	0.751	0.748	2.271	2.934	0.085	0.144	1.445	1.866	2.805	6.894	0.189	0.132	0.940	0.535	0.411	1.346	0.701	1.122	3.057	0.043	0.021	1.839
6197	chr5	16930779	16938185	+	0	NA	intron (NM_012334, intron 1 of 40)	Charlie24|DNA|hAT-Charlie	1903	NM_012334	4651	Hs.481720	NM_012334	ENSG00000145555	MYO10	-	myosin X	protein-coding	nan	nan	12.370	2.835	0.275	0.195	0.502	2.723	0.326	1.301	0.502	1.099	nan	0.146	0.139	0.319	0.245	1.736	2.562	2.545	1.678	4.994	1.135	0.668	0.690	nan	4.658	3.102	4.181	1.536	1.589	1.334	4.423	0.603	0.825	1.603	nan	0.539	0.464	0.916	1.796	0.050	1.704	0.502	1.099	0.603	0.164	1.404	0.200
6530	chr5	160804182	160819577	+	0	NA	intron (NM_021911, intron 6 of 10)	intron (NM_021911, intron 6 of 10)	163251	NM_021911	2561	Hs.303527	NM_000813	ENSG00000145864	GABRB2	-	gamma-aminobutyric acid type A receptor beta2 subunit	protein-coding	nan	0.691	0.516	0.029	0.156	0.137	0.080	0.078	0.126	0.061	0.127	0.046	0.270	0.021	0.119	0.166	0.137	0.222	0.251	0.272	0.258	0.100	0.082	0.094	0.039	3.322	3.183	0.165	0.104	0.608	0.363	0.116	0.124	0.094	0.098	0.114	0.192	0.366	0.242	0.397	0.590	0.013	0.031	0.080	0.046	0.119	0.059		0.024
485	chr1	144002397	144016615	+	0	NA	Intergenic	Intergenic	-94659	NR_144320	728833	Hs.535577	NM_207418	ENSG00000215784	FAM72D	GCUD2	family with sequence similarity 72 member D	protein-coding	3.846	nan	4.506	0.389	0.944	0.506	0.557	3.439	0.411	0.386	0.297	0.718	1.180	0.199	0.293	1.357	1.597	1.412	3.384	1.532	1.818	1.048	0.463	1.198	1.243	5.078	7.680	1.590	2.005	2.048	1.630	0.849	1.550	0.498	0.920	1.515	3.150	2.303	1.677	0.221	0.585	0.169	0.256	0.557	0.718	2.396	0.426	0.515	0.846
3316	chr17	18963873	18981144	+	0	NA	Intergenic	AluJb|SINE|Alu	-20266	NM_001291904	79999	Hs.677375	NM_024934	ENSG00000197665	LOC79999	-	uncharacterized LOC79999	protein-coding	2.320	1.343	1.287	1.866	6.049	3.539	4.130	0.856	0.422	0.510	0.519	2.692	5.195	3.579	0.278	4.846	5.283	2.809	nan	10.077	9.372	3.454	3.900	4.656	4.498	2.697	3.025	4.837	6.954	nan	4.408	2.157	2.644	2.597	2.803	3.977	3.834	0.844	0.704	0.782	1.782	0.759	1.615	4.130	2.692	1.124	2.154	0.788	1.130
1270	chr11	803343	811627	+	0	NA	Intergenic	AluY|SINE|Alu	-2235	NM_145887	55367	Hs.592290	NM_018494	ENSG00000177595	PIDD1	LRDD|PIDD	p53-induced death domain protein 1	protein-coding	5.905	5.255	9.370	3.590	4.454	2.452	4.472	1.846	0.449	2.585	1.417	7.995	12.068	2.974	0.137	7.395	7.829	5.219	7.587	12.327	10.012	10.597	4.809	8.033	8.819	6.170	8.207	6.720	9.394	6.149	6.762	4.271	6.531	6.106	6.368	4.905	4.455	3.972	2.038	3.305	6.086	1.231	1.624	4.472	7.995	1.481	3.691	2.525	1.597
1645	chr11	112830802	112856487	+	0	NA	intron (NM_001076682, intron 2 of 19)	intron (NM_001076682, intron 2 of 19)	-9462	NR_120563	101928847	Hs.711235	NR_120563	ENSG00000247416	LOC101928847	-	uncharacterized LOC101928847	ncRNA	1.197	1.717	0.749	1.751	2.113	1.046	1.155	0.311	0.031	1.519	0.756	1.328	3.725	0.084	0.095	6.613	nan	1.039	1.125	2.665	2.438	2.792	1.195	1.122	1.114	2.267	nan	1.718	2.977	2.788	2.695	1.058	2.186	3.286	5.327	1.495	2.813	1.294	0.787	1.548	1.165	1.051	0.639	1.155	1.328	0.352	0.742	0.913	1.292
3508	chr17	64745423	64762260	+	0	NA	intron (NM_002737, intron 13 of 16)	AluY|SINE|Alu	-29349	NR_030364	693219		NR_030364	ENSG00000207943	MIR634	MIRN634|hsa-mir-634	microRNA 634	ncRNA	0.917	nan	0.919	0.303	0.602	0.295	0.437	0.277	0.179	0.179	0.156	0.451	5.315	0.084	0.103	0.467	0.351	0.299	0.354	0.562	0.658	0.517	0.214	0.276	0.268	0.523	nan	0.984	1.110	0.749	0.691	0.190	0.317	0.644	0.712	0.500	1.125	0.822	0.506	0.302	0.068	0.152	0.088	0.437	0.451	0.165	0.145	0.059	0.271
324	chr1	59267397	59285903	+	0	NA	intron (NR_108106, intron 1 of 1)	intron (NR_108106, intron 1 of 1)	25827	NR_034015	100131060	Hs.680604	NR_034014	ENSG00000234807	LINC01135	-	long intergenic non-protein coding RNA 1135	ncRNA	1.108	1.176	1.163	1.310	0.904	0.606	0.533	0.610	0.174	0.459	0.196	1.655	1.232	0.428	0.121	0.485	0.734	0.535	0.793	1.665	1.405	4.702	1.328	1.375	1.524	1.053	1.603	2.289	2.552	0.529	0.357	0.578	0.731	0.934	1.144	0.327	nan	1.327	0.890	0.212	0.263	0.148	0.447	0.533	1.655	0.147	0.500	0.379	0.111
1389	chr11	40301430	40315894	+	0	NA	intron (NM_001258419, intron 4 of 6)	MIR3|SINE|MIR	6018	NR_047674	57689	Hs.745123	NM_020929	ENSG00000148948	LRRC4C	NGL-1|NGL1	leucine rich repeat containing 4C	protein-coding	nan	1.178	0.675	0.061	0.336	0.331	0.097	0.082	0.134	0.260	0.227	0.041	4.171	0.450	0.097	1.081	1.767	1.615	3.036	0.158	0.229	0.702	0.433	0.122	0.108	0.336	0.555	1.169	1.398	0.198	0.105	0.147	0.186	5.150	4.251	0.264	nan	1.589	0.860	0.767	0.191	1.440	0.016	0.097	0.041	0.013	0.315	0.055	0.188
7564	chr7	157856598	157872748	+	0	NA	intron (NM_130843, intron 10 of 21)	(TGG)n|Simple_repeat|Simple_repeat	217396	NR_038966	100506585	Hs.661265	NR_038966	ENSG00000233038	LOC100506585	-	uncharacterized LOC100506585	ncRNA	0.681	0.487	nan	0.856	1.015	0.657	0.800	0.066	0.050	0.825	0.552	2.938	2.155	0.055	0.108	0.391	0.532	0.069	0.106	1.891	2.161	1.868	0.454	0.036	0.062	0.082	0.226	2.305	3.337	0.558	0.616	0.288	0.431	0.447	0.500	0.069	0.112	2.065	1.333	5.849	2.441	0.041	0.078	0.800	2.938	0.288	0.512	0.086	0.008
5987	chr4	106551303	106560083	+	0	NA	intron (NM_001242729, intron 4 of 13)	intron (NM_001242729, intron 4 of 13)	72945	NR_046840	100874374	Hs.668908	NR_046840	ENSG00000249885	ARHGEF38-IT1	-	ARHGEF38 intronic transcript 1	ncRNA	0.624	nan	nan	0.650	0.378	0.276	0.233	0.264	0.091	0.179	0.131	0.232	0.906	0.025	0.078	1.060	1.346	6.972	11.711	0.269	0.261	0.140	0.048	0.210	0.196	0.656	nan	0.568	0.512	0.368	0.190	0.612	2.468	0.186	0.224	0.381	nan	0.486	0.333	0.019	0.072	0.033	0.054	0.233	0.232	0.011	0.208	2.158	0.098
637	chr1	164715889	164760404	+	0	NA	TTS (NR_038072)	TTS (NR_038072)	5732	NR_038072	100505795	Hs.661039	NR_038072	ENSG00000233693	LOC100505795	-	uncharacterized LOC100505795	ncRNA	1.444	nan	1.108	0.715	1.776	0.904	1.508	2.188	0.315	0.426	0.269	1.064	1.128	0.039	0.107	0.543	0.438	1.528	6.385	1.224	nan	2.264	1.245	0.171	0.164	3.989	4.561	1.653	nan	0.419	0.223	0.434	0.566	0.741	0.879	0.366	0.764	1.370	0.874	0.451	1.632	0.129	0.247	1.508	1.064	0.052	0.239	0.146	0.268
5566	chr3	137715004	137720613	+	0	NA	exon (NM_001002026, exon 1 of 5)	exon (NM_001002026, exon 1 of 5)	150	NM_001002026	51208	Hs.655324	NM_016369	ENSG00000066405	CLDN18	SFTA5|SFTPJ	claudin 18	protein-coding	0.640	nan	nan	1.000	0.321	0.145	0.113	0.183	0.087	0.170	0.167	0.065	0.196	0.078	0.055	0.318	0.160	0.086	0.261	0.256	0.308	12.413	4.365	0.280	0.217	0.357	0.644	0.206	0.287	nan	0.247	0.229	0.297	0.070	0.080	0.133	0.355	0.220	0.332	0.039	0.062		0.100	0.113	0.065	0.414		0.035	0.047
2066	chr12	86187234	86215241	+	0	NA	intron (NM_005447, intron 1 of 1)	L2a|LINE|L2	29081	NM_005447	9182	Hs.527881	NM_005447	ENSG00000198774	RASSF9	P-CIP1|PAMCI|PCIP1	Ras association domain family member 9	protein-coding	0.702	0.733	0.764	0.147	0.275	0.173	0.088	0.766	0.214	0.252	0.296	0.147	0.368	0.051	0.130	0.272	0.218	0.215	0.350	0.280	0.340	0.811	0.263	0.238	0.237	5.807	6.229	0.388	0.381	0.377	0.159	0.154	0.232	0.827	1.456	0.274	0.460	0.601	0.517	0.022	0.061	0.232	0.046	0.088	0.147	0.007	0.104	0.039	0.045
8027	chr9	4661365	4667532	+	0	NA	3' UTR (NM_203453, exon 1 of 1)	3' UTR (NM_203453, exon 1 of 1)	2154	NM_203453	403313	Hs.107510	NM_203453	ENSG00000205808	PLPP6	PDP1|PPAPDC2|PSDP|bA6J24.6	phospholipid phosphatase 6	protein-coding	2.961	7.542	3.896	3.343	2.623	1.194	2.372	0.779	0.131	5.365	1.528	2.872	7.318	1.235	0.094	2.659	4.228	2.307	3.432	4.700	4.181	9.298	4.303	3.955	3.841	4.004	4.875	3.464	5.672	3.679	4.759	1.751	3.619	5.829	4.516	0.471	nan	6.278	3.918	0.975	1.354	0.742	1.183	2.372	2.872	0.715	1.583	1.423	0.100
2679	chr14	75715538	75728216	+	0	NA	Intergenic	Intergenic	-23604	NM_005252	2353	Hs.25647	NM_005252	ENSG00000170345	FOS	AP-1|C-FOS|p55	Fos proto-oncogene, AP-1 transcription factor subunit	protein-coding	4.050	3.132	2.049	2.293	2.380	1.237	1.802	0.891	0.329	0.814	0.339	2.108	3.840	0.669	0.130	0.932	2.714	1.276	2.366	3.268	2.795	1.747	1.732	3.991	4.316	1.734	2.251	3.700	nan	3.330	3.621	1.084	2.363	5.221	4.297	2.689	2.461	4.475	nan	1.497	2.286	0.894	1.089	1.802	2.108	0.691	0.863	1.201	0.400
1232	chr10	122829851	122848534	+	0	NA	Intergenic	Intergenic	-228501	NR_033850	283089	Hs.568750	NR_033850	ENSG00000227165	WDR11-AS1	-	WDR11 antisense RNA 1	ncRNA	nan	0.904	1.356	0.044	0.278	0.129	0.082	0.076	0.067	0.025	0.049	0.038	0.612	0.023	0.085	0.277	0.233	0.915	2.933	0.163	0.164	0.535	0.259	0.107	0.151	3.721	4.063	0.419	0.679	1.017	0.707	0.125	0.219	0.128	0.099	0.997	2.917	0.148	0.226	0.036	0.091	0.026	0.029	0.082	0.038	0.664	0.044	0.026	1.785
6554	chr5	172741730	172759215	+	0	NA	intron (NM_003714, intron 2 of 3)	intron (NM_003714, intron 2 of 3)	6034	NM_003714	8614	Hs.233160	NM_003714	ENSG00000113739	STC2	STC-2|STCRP	stanniocalcin 2	protein-coding	1.435	2.201	0.910	1.740	0.748	0.359	0.946	1.459	0.129	0.689	0.280	0.868	6.155	2.017	0.148	1.040	1.484	1.035	nan	2.130	1.963	1.513	0.548	2.320	2.365	0.470	nan	2.909	3.601	2.326	4.087	1.032	2.268	4.155	3.663	0.188	0.539	0.386	0.300	1.520	1.343	1.212	1.557	0.946	0.868	0.315	1.174	0.855	0.148
2941	chr15	71482765	71506645	+	0	NA	intron (NM_024817, intron 2 of 16)	intron (NM_024817, intron 2 of 16)	-13307	NR_120350	101929196	Hs.680472	NR_120348		THSD4-AS1	-	THSD4 antisense RNA 1	ncRNA	0.614	0.786	1.223	0.420	2.424	1.182	0.404	0.189	0.122	0.373	0.192	2.217	0.741	0.049	0.094	0.280	0.164	0.306	0.930	0.456	0.450	3.757	1.036	0.172	0.124	0.112	0.221	1.112	0.990	1.710	1.551	0.261	0.303	0.447	0.297	0.284	0.504	0.779	0.570	0.023	0.531	0.048	0.389	0.404	2.217	0.200	0.132	0.071	0.042
5978	chr4	102598602	102636199	+	0	NA	Intergenic	Intergenic	-94364	NM_017935	55024	Hs.480400	NM_017935	ENSG00000153064	BANK1	BANK	B-cell scaffold protein with ankyrin repeats 1	protein-coding	0.742	nan	nan	0.267	0.291	0.119	0.411	0.091	0.082	0.189	0.136	0.360	0.602	0.049	0.078	0.202	0.144	0.429	nan	0.348	0.456	0.618	0.174	0.136	0.117	4.541	nan	0.337	0.341	0.811	0.498	0.080	0.148	0.579	0.889	0.325	nan	0.514	0.508	0.015	0.082	0.141	0.099	0.411	0.360	0.122	0.129	0.013	0.095
7668	chr8	49782256	49793545	+	0	NA	Intergenic	L1MD1|LINE|L1	46099	NM_003068	6591	Hs.360174	NM_003068	ENSG00000019549	SNAI2	SLUG|SLUGH|SLUGH1|SNAIL2|WS2D	snail family transcriptional repressor 2	protein-coding	1.617	nan	1.756	0.039	0.175	0.063	0.251	0.193	0.102	1.102	0.351	0.053	0.564	0.039	0.087	0.403	0.268	0.232	0.412	0.752	0.634	5.320	2.027	0.201	0.131	0.395	0.726	0.093	0.065	0.464	0.302	0.259	0.407	4.157	4.864	0.223	0.477	2.388	1.167	0.025	0.063	1.326	0.049	0.251	0.053	0.102	0.134	0.061	0.100
1639	chr11	111943508	111946617	+	0	NA	promoter-TSS (NM_001082619)	promoter-TSS (NM_001082619)	94	NM_001082969	55216	Hs.195060	NM_018195	ENSG00000150776	C11orf57	-	chromosome 11 open reading frame 57	protein-coding	2.402	2.586	1.816	4.677	3.369	2.121	2.900	1.032		1.464	0.848	3.341	7.729	2.921	0.210	17.098	16.596	4.938	7.291	6.606	7.582	6.726	3.015	8.436	9.418	3.979	nan	5.874	7.297	5.162	4.589	7.941	12.383	4.129	4.844	4.140	4.050	3.372	1.649	1.900	2.042	0.585	1.368	2.900	3.341	0.779	1.469	2.554	1.349
3872	chr18	63415273	63430834	+	0	NA	intron (NM_001317214, intron 1 of 10)	intron (NM_001317214, intron 1 of 10)	5165	NM_001317214	1005	Hs.541003	NM_004361	ENSG00000081138	CDH7	CDH7L1	cadherin 7	protein-coding	0.830	0.785	0.711	0.868	0.330	0.166	2.414	0.055	0.011	0.513	0.396	0.038	1.600	0.070	0.111	0.392	0.252	0.268	0.401	1.668	1.189	5.168	1.858	0.491	nan	2.542	nan	3.310	3.777	0.676	0.665	0.102	0.184	3.325	1.515	0.367	0.375	3.906	1.927	0.247	0.097	0.510	0.234	2.414	0.038	0.436	1.349	0.031	0.183
1035	chr10	14042928	14056966	+	0	NA	intron (NM_018027, intron 2 of 24)	intron (NM_018027, intron 2 of 24)	585	NM_001318336	55691	Hs.330463	NM_018027	ENSG00000151474	FRMD4A	CCAFCA|FRMD4|bA295P9.4	FERM domain containing 4A	protein-coding	nan	0.838	0.656	0.114	0.192	0.113	0.272	7.913	0.572	0.033	0.059	0.173	0.350	0.070	0.066	4.589	5.637	7.324	8.069	0.555	0.474	0.732	0.370	0.232	0.231	0.386	0.649	0.463	0.506	0.755	0.682	0.451	0.512	1.013	1.477	0.544	0.761	0.389	0.342	0.008	0.039	0.219	0.055	0.272	0.173	0.136	0.043	0.174	0.424
5197	chr22	22005040	22013282	+	0	NA	Intergenic	AluSg|SINE|Alu	1568	NR_029845	406920		NR_029845	ENSG00000207751	MIR130B	MIRN130B|mir-130b	microRNA 130b	ncRNA	3.436	nan	1.993	2.068	3.108	1.705	3.069	0.595	0.058	0.890	0.476	3.632	6.428	1.328	0.071	1.854	2.080	2.446	3.541	4.386	4.062	3.752	0.933	2.980	2.886	2.845	4.065	3.566	4.716	3.791	3.302	0.773	1.600	2.904	2.803	2.561	4.158	4.464	2.292	1.324	1.544	0.742	1.568	3.069	3.632	1.237	1.558	0.725	1.509
3367	chr17	32959896	32987448	+	0	NA	Intergenic	MamRep434|DNA|TcMar-Tigger	65904	NM_001304438	124842	Hs.310482	NM_207313	ENSG00000181291	TMEM132E	DFNB99	transmembrane protein 132E	protein-coding	nan	0.751	0.771	0.035	0.443	0.244	0.779	0.046	0.057	0.040	0.116	0.297	1.612	0.075	0.077	0.561	0.760	0.108	0.139	nan	1.470	0.151	0.061	0.137	0.129	0.148	0.272	0.121	0.168	nan	0.391	0.319	0.394	0.249	0.273	0.640	1.862	0.988	0.739	2.814	0.443	0.083	0.043	0.779	0.297	0.261	0.029	0.040	0.481
3964	chr19	10981012	11010991	+	0	NA	intron (NM_199141, intron 1 of 15)	intron (NM_199141, intron 1 of 15)	13748	NM_199141	10498	Hs.323213	NM_199141	ENSG00000142453	CARM1	PRMT4	coactivator associated arginine methyltransferase 1	protein-coding	2.163	2.106	1.715	0.911	0.825	0.565	2.214	0.403	0.173	0.364	0.340	2.610	1.459	0.630	0.097	3.446	4.381	2.809	2.831	2.286	2.376	2.444	0.857	1.959	1.920	0.945	1.592	3.414	5.223	3.084	3.195	0.877	1.740	2.741	2.586	1.583	2.902	1.030	0.664	0.454	0.672	0.780	0.998	2.214	2.610	0.901	0.368	0.886	0.862
6537	chr5	163613884	163619209	+	0	NA	Intergenic	Intergenic	277862	NR_105064	101927835	Hs.735171	NR_105064	ENSG00000253236	LINC02143	-	long intergenic non-protein coding RNA 2143	ncRNA	nan	0.592	0.583	0.067	0.319	0.099	0.848	1.526	0.329	0.117	0.121	0.067	0.265	0.042	0.097	0.783	0.624	8.371	10.241	0.086	0.067	0.084	0.044	0.063	0.072	0.134	0.282	0.114	0.074	0.754	0.387	0.165	0.376	0.646	1.097	0.319	0.790	0.283	0.284	0.021	0.048	0.085	0.015	0.848	0.067		0.115	0.037	0.087
6901	chr6	110114309	110145635	+	0	NA	intron (NM_014845, intron 22 of 22)	Charlie1a|DNA|hAT-Charlie	-55553	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA	nan	1.357	nan	2.753	0.775	0.425	0.282	0.145	0.076	0.385	0.336	3.714	2.348	0.055	0.160	0.465	0.411	0.447	0.560	4.243	nan	nan	0.785	0.329	0.350	0.478	nan	1.288	1.032	0.753	0.736	0.189	0.271	0.358	0.336	0.361	nan	1.561	0.764	1.408	0.410	0.088	0.317	0.282	3.714	0.151	1.196	0.044	0.150
4378	chr2	60075533	60080515	+	0	NA	Intergenic	LTR13|LTR|ERVK	532147	NR_132991	106660609	Hs.565545	NR_132991	ENSG00000223929	MIR4432HG	-	MIR4432 host gene	ncRNA	0.559	0.469	nan	0.162	0.227	0.155	0.180	0.000	0.066	0.137	0.133	0.048	0.188	0.084	0.079	1.063	1.611	9.579	2.605	0.330	0.420	nan	0.096	0.171	0.230	0.192	0.316	0.305	0.232	0.303	0.177	0.284	0.252	0.109	0.040	0.172	0.280	0.693	0.539	0.043	0.144	0.018	0.058	0.180	0.048	0.057	0.040	0.021	0.026
5529	chr3	127535503	127542741	+	0	NA	intron (NM_001003794, intron 2 of 7)	intron (NM_001003794, intron 2 of 7)	2603	NM_007283	11343	Hs.277035	NM_007283	ENSG00000074416	MGLL	HU-K5|HUK5|MAGL|MGL	monoglyceride lipase	protein-coding	1.901	3.091	1.721	0.403	1.446	0.842	0.506	1.280	0.243	3.930	1.847	1.189	1.295	0.194	0.072	0.321	0.812	0.361	0.862	0.977	0.869	4.829	1.413	0.329	0.464	1.861	nan	1.397	1.516	5.185	5.832	0.608	0.856	1.542	1.598	0.978	1.109	3.346	1.309	0.917	0.257	0.646	0.394	0.506	1.189	0.453	0.300	0.138	0.289
2995	chr15	93176778	93217041	+	0	NA	intron (NM_207446, intron 1 of 2)	intron (NM_207446, intron 1 of 2)	2122	NM_207446	400451	Hs.27373	NM_207446	ENSG00000185442	FAM174B	-	family with sequence similarity 174 member B	protein-coding	nan	nan	nan	0.413	1.005	0.468	0.720	0.149	0.101	0.942	0.647	3.199	5.588	0.059	0.078	0.289	0.172	0.474	0.908	1.721	1.686	nan	0.234	0.377	0.399	0.683	1.127	4.594	4.451	nan	1.721	0.649	1.241	0.867	0.905	0.702	nan	1.443	0.863	0.671	3.480	0.202	1.988	0.720	3.199	0.077	1.274	0.724	0.570
5729	chr3	182091041	182098987	+	0	NA	Intergenic	Intergenic	109136	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA	1.017	1.205	0.592	0.987	0.384	0.203	0.192	0.131	0.125	0.309	0.235	0.281	0.447	0.041	0.088	0.315	0.196	0.143	0.278	0.354	0.599	0.842	0.446	0.203	0.164	0.427	0.590	0.780	0.809	0.625	0.204	0.079	0.166	0.254	0.282	0.173	0.272	0.663	0.619	0.056	0.411	0.079	4.760	0.192	0.281	0.037	0.077	0.051	0.112
7928	chr8	128734377	128756397	+	0	NA	intron (NR_117101, intron 1 of 1)	intron (NR_117101, intron 1 of 1)	826	NR_117102	100270680	Hs.333720	NR_117101	ENSG00000249375	CASC11	CARLo-7|LINC00990|TCONS_00014535	cancer susceptibility candidate 11 (non-protein coding)	ncRNA	12.845	6.746	12.509	1.038	1.907	1.035	0.076	1.344	0.204	2.535	1.308	0.120	nan	1.339	0.124	9.004	10.657	2.952	4.798	1.017	0.847	3.075	1.050	nan	nan	13.394	18.233	3.217	3.239	52.371	38.956	0.249	0.447	0.620	0.578	19.260	29.704	0.471	0.368	0.416	0.186	0.169	0.180	0.076	0.120	8.863	1.458	0.112	20.977
1712	chr11	123318931	123349437	+	0	NA	Intergenic	Intergenic	-46403	NM_001330396	57476	Hs.144725	NM_020716	ENSG00000023171	GRAMD1B	-	GRAM domain containing 1B	protein-coding	0.793	1.042	0.990	0.474	0.766	0.419	0.582	0.075	0.084	1.128	0.553	0.397	0.479	0.068	0.117	0.503	0.350	0.282	0.875	0.634	0.651	0.119	0.083	0.854	0.916	1.316	1.747	0.155	0.195	1.068	0.691	0.601	0.756	1.882	2.626	0.432	nan	2.047	1.201	2.837	0.326	0.231	0.127	0.582	0.397	0.097	0.128	0.259	0.187
8243	chr9	114710902	114748232	+	0	NA	Intergenic	MIR3|SINE|MIR	35187	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA	0.817	0.961	nan	1.682	0.842	0.486	0.191	0.341	0.116	0.261	0.266	1.405	0.722	0.221	0.085	0.211	0.167	0.536	1.396	0.780	0.858	0.785	0.196	0.318	0.328	0.143	0.226	6.832	nan	0.774	0.385	0.104	0.177	0.398	0.429	0.323	0.898	nan	0.640	0.169	0.114	0.104	0.132	0.191	1.405	0.211	0.531	0.019	0.370
2344	chr13	73711959	73723120	+	0	NA	Intergenic	AluSx|SINE|Alu	84609	NM_001730	688	Hs.508234	NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	Kruppel like factor 5	protein-coding	nan	2.354	0.743	1.172	1.035	0.656	1.066	0.565	0.164	0.110	0.117	1.944	4.488	0.204	0.113	0.513	0.375	0.534	1.312	1.222	1.118	nan	3.267	0.091	0.138	0.059	0.128	1.116	1.822	nan	0.163	0.240	0.564	0.079	0.113	0.351	nan	0.290	0.265	0.281	2.480		0.597	1.066	1.944	0.026	0.128	0.053	0.077
5624	chr3	159504051	159523761	+	0	NA	intron (NM_001197113, intron 5 of 10)	intron (NM_001197113, intron 5 of 10)	-27505	NR_121669	100874433	Hs.601476	NR_121669		IQCJ-SCHIP1-AS1	uaz98	IQCJ-SCHIP1 readthrough antisense RNA 1	ncRNA	nan	1.341	0.787	0.307	0.412	0.227	0.294	0.757	0.091	0.192	0.183	0.136	0.449	0.182	0.079	0.295	0.294	1.856	4.846	0.380	0.435	1.174	0.355	0.188	0.172	0.466	nan	0.501	0.577	0.612	0.342	0.181	0.289	0.294	0.773	0.386	0.629	0.688	0.581	0.142	0.224	0.063	0.487	0.294	0.136	0.053	0.114	0.062	0.130
2552	chr14	35852346	35883032	+	0	NA	Intergenic	Intergenic	6271	NM_020529	4792	Hs.81328	NM_020529	ENSG00000100906	NFKBIA	IKBA|MAD-3|NFKBI	NFKB inhibitor alpha	protein-coding	2.438	1.867	1.372	1.409	1.087	0.658	1.361	1.897	0.304	0.687	0.341	1.770	6.981	1.486	0.135	0.708	0.916	2.826	3.823	2.130	2.137	2.576	1.435	4.034	4.154	1.384	1.920	4.166	5.628	3.132	2.980	0.607	1.003	1.275	1.188	1.484	1.941	1.276	0.884	3.928	2.898	0.361	0.805	1.361	1.770	0.467	0.918	0.309	0.658
5007	chr20	52824001	52825887	+	0	NA	intron (NM_002623, intron 1 of 3)	CpG	442	NM_002623	5203	Hs.91161	NM_002623	ENSG00000101132	PFDN4	C1|PFD4	prefoldin subunit 4	protein-coding	8.021	6.710	6.995	7.919	6.467	3.461	4.919	5.729	0.338	2.673	1.302	8.862	10.788	8.443	0.140	19.253	17.548	10.960	17.746	11.299	13.224	13.109	11.187	21.405	24.057	8.415	8.639	10.938	17.067	18.228	18.175	16.618	21.385	5.080	4.227	16.224	11.362	4.994	3.447	3.623	5.626	0.648	2.451	4.919	8.862	2.974	5.601	3.120	6.657
6933	chr6	122930112	122946281	+	0	NA	intron (NM_181795, intron 1 of 4)	intron (NM_181795, intron 1 of 4)	6819	NM_181795	5570	Hs.741340	NM_032471	ENSG00000135549	PKIB	PRKACN2	cAMP-dependent protein kinase inhibitor beta	protein-coding	1.520	2.035	1.388	0.304	1.113	0.565	0.324	0.106	0.049	1.543	0.842	0.992	1.679	0.074	0.127	0.287	0.186	0.230	0.507	1.785	1.813	10.832	4.522	0.329	0.385	0.352	0.456	0.425	0.513	1.236	0.993	0.127	0.241	6.603	8.583	0.585	1.435	1.610	0.760	0.094	0.268	1.598	0.583	0.324	0.992	0.288	0.577	0.042	0.100
7751	chr8	73774781	73809621	+	0	NA	intron (NM_004770, intron 2 of 2)	L1HS|LINE|L1	-128896	NM_017489	7013	Hs.442707	NM_003218	ENSG00000147601	TERF1	PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1	telomeric repeat binding factor 1	protein-coding	2.087	1.137	4.790	2.135	0.585	0.267	0.411	0.103	0.074	0.989	0.471	2.082	1.231	0.050	0.082	0.459	0.523	0.312	0.386	3.988	4.165	3.634	1.191	0.744	0.748	1.122	1.802	2.412	2.548	2.761	2.330	0.251	0.409	2.785	3.106	0.933	3.247	3.975	1.931	0.329	0.535	0.814	0.313	0.411	2.082	0.125	2.754	0.097	0.691
4452	chr2	102416159	102440253	+	0	NA	intron (NM_001242559, intron 3 of 29)	intron (NM_001242559, intron 3 of 29)	113668	NM_145687	9448	Hs.701013	NM_004834	ENSG00000071054	MAP4K4	FLH21957|HEL-S-31|HGK|MEKKK4|NIK	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	1.484	nan	2.564	0.070	0.221	0.173	0.314	0.745	0.086	0.117	0.128	0.169	0.874	0.104	0.089	0.488	0.640	0.791	1.035	1.004	0.991	0.778	0.186	0.407	0.380	3.213	3.772	0.680	0.975	2.104	1.648	1.363	1.904	1.177	1.415	1.053	1.840	0.819	0.475	0.376	0.177	0.267	0.352	0.314	0.169	0.472	0.092	1.631	0.565
5456	chr3	111212044	111217686	+	0	NA	Intergenic	Intergenic	-46061	NR_134917	10225	Hs.142023	NM_005816	ENSG00000153283	CD96	TACTILE	CD96 molecule	protein-coding	0.963	nan	0.659	0.079	0.417	0.057	0.051	0.148	0.028	0.082	0.088	0.170	0.216	0.212	0.116	0.339	0.209	0.209	0.260	0.260	nan	19.617	11.215	0.159	0.225	nan	0.339	0.220	0.191	0.841	0.253	0.084	0.166	0.030	0.018	0.408	0.723	0.419	0.392	0.019	0.159			0.051	0.170	0.051	0.018	0.017	0.220
5585	chr3	142566064	142592766	+	0	NA	intron (NM_013363, intron 2 of 8)	AluSq2|SINE|Alu	28630	NM_013363	26577	Hs.8944	NM_013363	ENSG00000163710	PCOLCE2	PCPE2	procollagen C-endopeptidase enhancer 2	protein-coding	1.613	nan	nan	0.365	0.452	0.212	0.241	0.169	0.114	0.323	0.218	0.359	0.234	0.050	0.088	2.604	3.516	0.358	0.371	0.744	0.772	nan	0.963	0.664	0.653	1.547	nan	0.531	nan	nan	2.180	0.730	0.848	1.151	1.241	0.509	1.489	0.703	0.614	0.048	0.084	0.257	1.459	0.241	0.359	0.677	0.042	0.642	0.384
3749	chr18	38948759	38961739	+	0	NA	Intergenic	Intergenic	145312	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA	nan	1.159	0.746	0.478	9.527	5.224	0.936	0.078	0.025	0.858	0.515	1.109	1.260	0.075	0.062	0.429	0.323	0.428	0.432	0.593	0.767	9.424	6.798	0.107	0.077	0.502	0.591	nan	0.494	0.398	0.211	0.085	0.174	2.602	2.703	0.339	0.542	1.796	1.217	0.293	0.180	0.302	0.092	0.936	1.109	0.045	1.192	0.054	0.020
6029	chr4	140786099	140810829	+	0	NA	intron (NM_018717, intron 3 of 5)	intron (NM_018717, intron 3 of 5)	211542	NM_002413	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	1.119	1.243	0.804	1.792	3.440	1.803	0.507	0.359	0.124	1.101	0.601	2.426	1.880	0.027	0.079	0.355	0.475	0.541	0.807	0.566	0.804	2.860	1.156	0.130	0.131	2.988	3.382	1.265	1.816	0.508	0.316	0.350	0.990	1.546	1.735	0.394	0.901	1.331	0.636	1.165	0.414	0.532	0.331	0.507	2.426	0.165	0.307	0.776	0.209
3115	chr16	30698494	30711855	+	0	NA	Intergenic	Intergenic	4636	NM_001256932	730183	Hs.535456	NM_001256932		LOC730183	-	uncharacterized LOC730183	protein-coding	2.130	1.438	1.878	2.783	2.416	1.373	1.960	1.028	0.163	0.667	0.285	2.320	5.516	1.449	0.080	2.965	2.665	2.581	3.281	2.980	3.126	3.888	2.795	5.811	6.096	1.570	2.058	4.332	5.540	3.592	3.113	3.189	3.858	2.513	3.190	2.701	2.805	1.703	1.045	1.694	1.164	0.595	0.942	1.960	2.320	0.706	1.318	1.901	1.081
380	chr1	82113384	82188777	+	0	NA	Intergenic	L1PB1|LINE|L1	-14375	NM_001297704	23266	Hs.24212	NM_012302	ENSG00000117114	ADGRL2	CIRL2|CL2|LEC1|LPHH1|LPHN2	adhesion G protein-coupled receptor L2	protein-coding	0.894	nan	nan	0.104	0.290	0.133	0.195	0.312	0.110	0.096	0.133	0.113	0.405	5.339	0.220	0.289	0.184	0.247	0.377	0.287	0.381	0.428	0.157	0.237	0.208	0.608	0.906	0.452	0.484	0.314	0.148	0.132	0.206	0.028	0.047	0.271	0.523	0.483	0.501	0.066	0.054	0.014	0.057	0.195	0.113	0.022	0.079	0.037	0.085
3206	chr16	85533009	85733361	+	0	NA	Intergenic	Intergenic	-11844	NM_001134473	23199	Hs.461647	NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding	nan	1.290	2.583	1.853	1.641	0.916	4.575	0.455	0.103	0.611	0.353	1.937	2.247	0.461	0.076	1.030	1.330	0.491	0.798	2.696	2.397	1.699	0.553	1.714	1.748	0.773	1.173	2.479	2.693	2.040	1.960	0.714	1.280	0.698	0.680	1.429	2.822	1.406	0.706	1.231	1.068	0.220	1.366	4.575	1.937	0.587	1.123	0.764	1.088
965	chr1	244391660	244404880	+	0	NA	Intergenic	Intergenic	-117667	NM_001276349	200159	Hs.442703	NM_001012970	ENSG00000173728	C1orf100	-	chromosome 1 open reading frame 100	protein-coding	nan	2.609	nan	1.904	2.986	1.576	1.178	0.240	0.123	0.542	0.261	4.378	1.649	0.075	0.107	0.470	0.390	0.576	0.914	5.886	5.829	4.642	1.154	0.747	0.724	0.664	1.086	5.407	3.668	0.827	0.741	0.264	0.375	1.808	1.362	0.388	0.712	2.137	1.286	0.462	0.546	0.138	0.748	1.178	4.378	0.170	0.998	0.172	0.141
1279	chr11	2207902	2240025	+	0	NA	Intergenic	Intergenic	29670	NR_039834	100616126		NR_039834	ENSG00000265258	MIR4686	-	microRNA 4686	ncRNA	0.598	1.659	0.882	0.182	0.832	0.404	1.581	0.037	0.055	0.207	0.193	1.062	0.959	0.030	0.045	4.377	6.118	0.787	1.292	0.808	0.821	1.780	0.772	5.214	5.343	0.118	0.238	1.273	1.892	0.915	0.986	4.106	5.104	0.821	0.829	0.177	0.148	0.844	0.545	0.580	0.056	0.216	0.017	1.581	1.062	0.081	0.459	3.895	0.012
286	chr1	45406906	45417149	+	0	NA	intron (NM_001166588, intron 3 of 9)	intron (NM_001166588, intron 3 of 9)	40367	NM_020365	8891	Hs.533549	NM_020365	ENSG00000070785	EIF2B3	EIF-2B|EIF2Bgamma	eukaryotic translation initiation factor 2B subunit gamma	protein-coding	nan	0.985	nan	0.145	0.293	0.203	0.128	2.655	0.470	1.094	0.753	0.229	0.389	0.063	0.110	0.479	0.536	0.516	0.600	1.165	1.500	0.503	0.160	0.410	0.474	1.384	nan	nan	0.770	7.099	6.082	0.465	nan	0.775	0.891	1.101	2.832	1.581	0.801	0.142	0.302	0.400	0.822	0.128	0.229	1.276	0.844	0.358	1.345
1395	chr11	44731955	44759959	+	0	NA	Intergenic	Intergenic	-40019	NM_130783	90139	Hs.385634	NM_130783	ENSG00000157570	TSPAN18	TSPAN	tetraspanin 18	protein-coding	nan	0.782	2.678	0.050	0.373	0.166	0.105	0.225	0.133	0.459	0.215	0.103	0.742	0.252	0.119	0.735	1.593	0.260	0.354	1.690	1.724	0.220	0.097	0.126	0.106	2.589	3.440	0.125	0.171	3.791	3.471	0.240	0.356	0.106	0.158	1.178	nan	0.969	0.776	0.071	0.060	0.007	0.029	0.105	0.103	0.821	0.037	0.042	1.456
1075	chr10	25236457	25243810	+	0	NA	intron (NM_020200, intron 1 of 8)	L2a|LINE|L2	1440	NM_020200	56952	Hs.405619	NM_020200	ENSG00000099256	PRTFDC1	HHGP	phosphoribosyl transferase domain containing 1	protein-coding	2.703	2.349	3.531	1.934	4.075	2.705	2.589	5.360	0.733	1.021	0.687	4.165	1.611	1.947	0.113	0.591	0.894	4.077	7.594	4.774	4.381	12.345	6.229	1.336	1.453	4.274	5.096	2.973	5.211	2.461	3.159	1.412	1.288	2.010	1.644	1.728	2.350	1.773	0.943	1.975	0.871	0.298	2.459	2.589	4.165	0.688	1.354	0.470	1.361
2426	chr13	105975588	105981637	+	0	NA	Intergenic	Intergenic	-139604	NM_001161814	267012	Hs.381382	NM_172370	ENSG00000182346	DAOA	LG72|SG72	D-amino acid oxidase activator	protein-coding	0.725	0.968	0.489	0.133	0.679	0.264	0.629	0.062	0.026	0.454	0.107	0.435	1.069	0.054	0.108	2.942	1.308	9.569	4.497	1.560	1.548	0.279	0.121	14.365	13.857	0.169	nan	0.806	0.658	0.346	0.200	0.172	0.470	0.053	0.042	0.289	nan	0.047	0.077	0.018	0.160	0.019	0.433	0.629	0.435	0.148		0.057	0.021
3125	chr16	33886375	33900752	+	0	NA	Intergenic	HSATII|Satellite|Satellite	68940	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA	5.347	5.968	5.001	0.828	1.455	0.842	0.862	0.675	5.760	0.490	1.685	0.408	2.074	0.294	1.892	1.983	0.764	0.674	0.866	1.390	2.295	0.682	0.482	0.940	0.868	1.506	2.180	1.206	1.247	2.517	0.610	0.947	1.530	0.559	1.056	0.865	1.659	0.672	0.881	0.174	0.522	0.558	0.305	0.862	0.408	0.156	0.212	0.442	0.483
4469	chr2	112112074	112137921	+	0	NA	non-coding (NR_136162, exon 2 of 5)	non-coding (NR_136162, exon 2 of 5)	-46329	NR_039634	100616499		NR_039634	ENSG00000265507	MIR4435-1	mir-4435-1	microRNA 4435-1	ncRNA	1.457	nan	1.013	0.729	0.718	0.229	1.523	0.925	0.205	0.442	0.216	2.523	nan	0.160	0.124	0.392	0.355	0.319	0.736	1.865	nan	0.477	0.169	1.048	0.977	0.439	0.756	1.046	0.926	0.442	0.227	0.222	0.423	0.469	0.402	0.149	0.225	0.640	0.387	0.685	0.090	0.132	0.509	1.523	2.523	0.212	0.291	0.172	0.047
6443	chr5	124804509	124828293	+	0	NA	Intergenic	Intergenic	-12553	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA	nan	1.377	0.881	0.229	1.338	0.877	0.216	0.679	0.142	0.293	0.211	0.519	1.019	4.030	0.197	0.238	0.172	0.599	nan	0.873	0.899	1.430	0.380	0.334	0.321	0.576	0.916	0.647	0.671	0.981	0.682	0.073	0.175	1.879	1.954	1.591	5.414	0.625	0.298	0.651	0.320	0.608	0.203	0.216	0.519	0.049	0.612	0.029	1.553
6277	chr5	57097356	57143159	+	0	NA	Intergenic	Intergenic	74732	NR_109900	101928539	Hs.639385	NR_109900	ENSG00000249584	LOC101928539	-	uncharacterized LOC101928539	ncRNA	nan	nan	0.964	0.056	0.171	0.098	0.282	0.890	0.131	0.058	0.058	0.018	0.697	2.689	0.182	0.148	0.098	0.869	3.196	0.148	0.176	nan	0.091	0.128	0.104	0.307	0.563	0.171	0.205	nan	0.198	0.078	0.098	0.200	0.242	0.268	0.644	0.364	0.356	0.047	0.083	0.042	0.043	0.282	0.018	0.053	0.062	0.021	0.124
6258	chr5	51323074	51344310	+	0	NA	Intergenic	Intergenic	-654526	NR_046243	642366	Hs.544139	NR_046243		LOC642366	-	uncharacterized LOC642366	ncRNA	nan	nan	0.760	1.473	5.632	2.933	5.926	0.094	0.053	1.968	1.510	2.871	2.524	0.086	0.123	0.172	0.091	0.291	0.282	6.049	7.783	nan	1.696	0.076	0.065	0.615	0.745	0.755	0.943	nan	0.230	0.066	0.060	1.985	2.199	0.231	0.392	4.354	1.534	6.844	3.136	0.714	0.205	5.926	2.871	0.005	0.036	0.042	0.053
1779	chr12	4414972	4441816	+	0	NA	Intergenic	MIRc|SINE|MIR	-1965	NM_020375	57103	Hs.504545	NM_020375	ENSG00000078237	TIGAR	C12orf5|FR2BP	TP53 induced glycolysis regulatory phosphatase	protein-coding	1.083	nan	nan	0.688	0.401	0.131	0.239	0.265	0.126	0.196	0.238	0.230	0.998	0.450	0.138	0.295	0.240	0.719	1.451	nan	0.798	0.822	0.215	0.653	0.653	0.743	1.168	0.491	0.693	0.718	0.589	0.354	0.586	0.364	0.303	1.411	nan	0.404	0.342	0.124	0.093	0.035	0.107	0.239	0.230	0.301	0.114	0.124	0.960
4563	chr2	160567431	160570521	+	0	NA	promoter-TSS (NR_110586)	promoter-TSS (NR_110586)	8	NM_001282806	64844	Hs.529272	NM_022826	ENSG00000136536	MARCH7	AXO|AXOT|MARCH-VII|RNF177	membrane associated ring-CH-type finger 7	protein-coding	7.716	4.889	7.405	6.563	10.008	4.824	5.658	4.311	0.258	2.827	2.098	7.820	11.925	5.063	0.171	6.061	6.691	13.095	18.197	10.971	10.313	7.115	3.397	20.826	22.004	6.740	8.674	8.529	14.117	8.817	9.497	4.583	10.223	5.042	5.476	12.047	10.661	3.397	1.980	6.960	4.734	1.104	3.171	5.658	7.820	1.691	1.689	3.163	2.973
607	chr1	159784133	159801556	+	0	NA	Intergenic	Intergenic	-3635	NM_001330741	56833	Hs.438683	NM_020125	ENSG00000158714	SLAMF8	BLAME|CD353|SBBI42	SLAM family member 8	protein-coding	nan	nan	3.492	0.344	7.360	3.809	0.360	0.102	0.055	0.817	0.326	1.783	0.457	0.013	0.101	0.433	0.514	0.475	0.490	2.058	nan	2.402	0.748	0.101	0.152	0.393	0.654	2.851	2.947	0.686	0.632	0.584	0.503	2.711	2.861	0.461	0.761	1.166	0.721	0.415	1.688	0.773	2.762	0.360	1.783	0.186	0.580	0.120	0.185
1807	chr12	7281792	7284104	+	0	NA	promoter-TSS (NM_014718)	promoter-TSS (NM_014718)	-19	NM_014718	9746	Hs.535378	NM_014718	ENSG00000139182	CLSTN3	CDHR14|CSTN3|alcbeta	calsyntenin 3	protein-coding	2.839	nan	3.543	2.964	3.038	1.315	1.104	0.403	0.069	2.046	0.522	3.906	9.564	2.168	0.150	1.451	2.665	3.805	3.806	9.343	7.793	13.361	5.183	5.988	6.184	2.160	3.041	3.287	4.252	2.258	1.994	1.619	3.293	2.903	1.610	1.640	nan	2.118	1.037	2.013	3.807	0.248	1.611	1.104	3.906	7.285	1.597	1.204	0.637
2902	chr15	63330166	63348381	+	0	NA	intron (NM_001018004, intron 2 of 8)	intron (NM_001018004, intron 2 of 8)	-1245	NM_001330351	7168	Hs.133892	NM_000366	ENSG00000140416	TPM1	C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding	1.445	1.359	nan	0.534	0.666	0.247	0.338	2.639	0.414	0.564	0.306	0.896	2.993	0.631	0.069	0.645	0.777	5.627	9.213	1.587	1.387	nan	0.734	1.459	1.422	0.744	1.252	1.175	1.438	2.635	2.626	1.234	3.307	1.276	1.372	1.175	2.919	0.644	0.453	0.704	0.570	0.418	0.707	0.338	0.896	1.092	1.047	1.163	0.490
5472	chr3	114111722	114141429	+	0	NA	intron (NM_001164343, intron 8 of 11)	intron (NM_001164343, intron 8 of 11)	-24086	NM_001164342	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding	1.113	nan	1.006	0.176	0.780	0.497	0.456	1.170	0.132	0.360	0.316	3.191	1.070	0.019	0.083	1.840	2.549	3.160	4.324	2.514	nan	2.565	0.999	0.287	0.298	nan	2.735	0.297	0.339	0.678	0.335	1.536	2.134	0.146	0.205	0.508	1.056	1.488	1.114	0.325	1.104	0.026	0.107	0.456	3.191	0.094	0.178	1.662	0.391
3093	chr16	25366959	25383319	+	0	NA	Intergenic	LTR33|LTR|ERVL	-106284	NM_001012981	342357	Hs.513451	NM_001012981	ENSG00000155592	ZKSCAN2	ZNF694|ZSCAN31|ZSCAN34	zinc finger with KRAB and SCAN domains 2	protein-coding	0.387	0.445	nan	0.082	0.204	0.157	0.101	0.059	0.019	0.038	0.060	0.110	0.275	0.060	0.071	4.742	4.015	0.104	0.101	0.151	0.140	nan	0.065	0.322	0.338	0.154	0.292	0.481	0.454	0.224	0.110	2.531	2.953	0.065	0.104	0.129	0.180	0.159	0.331	0.020	0.049	0.024	0.044	0.101	0.110	0.006	0.031	4.170	0.046
2508	chr14	29205825	29273466	+	0	NA	TTS (NM_005249)	TTS (NM_005249)	-2265	NR_026732	387978	Hs.633254	NR_026731	ENSG00000186960	LINC01551	C14orf23|c14_5148	long intergenic non-protein coding RNA 1551	ncRNA	1.126	0.995	0.752	0.640	3.151	1.713	2.948	2.551	0.214	0.589	0.434	3.640	5.637	0.282	0.116	0.312	0.234	0.209	0.244	7.142	6.754	3.570	1.186	0.203	0.189	5.581	7.589	1.464	2.012	3.555	4.048	0.129	0.207	5.265	4.414	2.687	2.433	3.515	1.939	0.563	3.744	1.137	3.881	2.948	3.640	0.276	0.126	0.069	0.820
7397	chr7	96366805	96374252	+	0	NA	Intergenic	Intergenic	-31325	NM_006304	7979	Hs.489201	NM_006304	ENSG00000127922	SEM1	DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1	SEM1, 26S proteasome complex subunit	protein-coding	nan	1.019	nan	0.200	0.746	0.261	0.528	0.142	0.021	0.880	0.594	0.241	0.482	0.058	0.195	0.307	0.295	0.766	0.480	0.456	0.531	2.032	0.753	0.233	0.225	0.262	0.538	0.259	0.228	0.355	0.145	0.288	0.250	7.559	9.960	0.324	nan	1.834	1.276	0.033	0.166	2.245	0.087	0.528	0.241	0.027	0.027	0.105	0.182
1073	chr10	25000604	25013664	+	0	NA	intron (NM_020824, intron 2 of 25)	intron (NM_020824, intron 2 of 25)	5463	NM_020824	57584	Hs.524195	NM_020824	ENSG00000107863	ARHGAP21	ARHGAP10	Rho GTPase activating protein 21	protein-coding	1.853	1.983	2.867	0.881	1.853	0.967	0.744	4.394	0.535	0.577	0.342	2.143	3.559	1.501	0.097	2.913	4.518	1.869	2.643	2.092	1.799	3.714	2.064	2.002	1.836	2.826	3.300	1.083	1.804	2.019	2.185	1.521	3.978	0.990	0.941	3.709	5.682	0.967	0.593	1.042	1.332	0.138	4.070	0.744	2.143	0.268	0.862	1.564	3.342
5264	chr22	38791157	38804671	+	0	NA	Intergenic	Intergenic	-2983	NR_002821	400927	Hs.720223	NR_002821		LOC400927	-	TPTE and PTEN homologous inositol lipid phosphatase pseudogene	pseudo	2.386	nan	2.087	1.615	1.510	1.048	1.967	0.803	0.106	0.571	0.413	1.367	4.891	1.522	0.149	5.332	5.934	3.572	3.296	2.222	1.774	3.459	1.090	1.468	1.556	1.353	nan	2.347	3.863	nan	2.199	1.954	3.992	2.952	2.748	1.382	1.971	1.114	0.672	0.856	1.072	0.938	1.681	1.967	1.367	0.680	0.963	2.826	0.420
2187	chr12	122580622	122611297	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	-56307	NM_152759	254050	Hs.374856	NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding	1.340	2.047	1.227	1.277	2.699	1.415	0.479	0.150	0.162	0.889	0.562	1.520	2.339	0.149	0.151	1.996	2.345	0.450	0.838	1.630	1.730	nan	0.819	0.916	0.992	1.158	1.465	3.105	4.076	0.719	0.618	3.994	4.523	1.695	2.228	0.295	0.562	2.588	1.275	2.317	2.551	0.428	0.350	0.479	1.520	0.300	0.312	5.151	0.206
8279	chr9	129986109	130028059	+	0	NA	Intergenic	Intergenic	-18857	NM_001286779	84253	Hs.29304	NM_032293	ENSG00000136895	GARNL3	bA356B19.1	GTPase activating Rap/RanGAP domain like 3	protein-coding	nan	nan	1.347	0.422	0.412	0.252	0.249	0.159	0.112	0.187	0.131	0.354	nan	0.204	0.095	0.345	0.340	0.465	0.612	0.726	0.765	nan	0.285	0.708	0.732	0.413	nan	0.683	0.964	1.244	0.863	0.213	0.304	0.287	0.281	1.136	2.520	nan	0.582	0.139	0.153	0.069	0.135	0.249	0.354	0.141	0.253	0.048	0.443
3860	chr18	59992537	60000448	+	0	NA	intron (NM_003839, intron 1 of 9)	intron (NM_003839, intron 1 of 9)	3972	NM_001270949	8792	Hs.204044	NM_003839	ENSG00000141655	TNFRSF11A	CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER	TNF receptor superfamily member 11a	protein-coding	nan	1.094	1.082	1.553	0.728	0.547	0.776	0.153	0.060	1.069	0.358	0.781	1.769	0.181	0.086	0.777	0.685	1.044	1.787	2.617	2.373	7.707	1.821	2.210	2.205	1.163	1.506	1.542	2.169	0.931	1.300	0.351	0.548	1.937	2.090	0.437	0.805	nan	3.662	0.171	0.596	0.383	0.221	0.776	0.781	0.283	0.320	0.012	0.248
816	chr1	205400998	205427574	+	0	NA	intron (NR_103783, intron 1 of 1)	intron (NR_103783, intron 1 of 1)	3240	NR_029893	442891		NR_029893	ENSG00000199059	MIR135B	MIRN135B|mir-135b	microRNA 135b	ncRNA	1.671	2.257	1.219	0.417	3.110	1.631	2.709	0.112	0.145	0.598	0.326	1.339	2.049	0.106	0.063	4.377	6.594	0.469	0.979	2.227	1.845	2.681	0.806	nan	nan	0.635	1.058	3.506	4.800	1.000	0.715	0.842	1.149	2.556	2.560	1.259	2.951	2.009	1.057	2.833	3.125	1.003	0.215	2.709	1.339	0.113	0.359	0.506	0.343
5307	chr22	49199494	49209428	+	0	NA	Intergenic	Intergenic	28354	NR_039761	100616415		NR_039761	ENSG00000266887	MIR4535	-	microRNA 4535	ncRNA	0.674	0.391	nan	0.018	0.345	0.174	0.230	0.045	0.065	0.284	0.340	0.944	0.447	0.011	0.104	0.158	0.151	0.111	0.109	1.416	1.878	1.308	0.487	0.074	0.083	0.180	0.298	0.760	0.968	0.503	0.336	0.271	0.200	0.182	0.172	0.081	0.101	3.615	1.782	2.388	0.857	0.029	0.024	0.230	0.944	0.155	0.652	0.020	0.037
4260	chr2	25285292	25303571	+	0	NA	intron (NM_001319099, intron 1 of 22)	intron (NM_001319099, intron 1 of 22)	29099	NM_001319099	22979	Hs.4892	NM_014971	ENSG00000084710	EFR3B	KIAA0953	EFR3 homolog B	protein-coding	0.911	0.825	0.971	2.282	0.436	0.339	0.568	0.049	0.143	1.268	0.699	0.360	1.071	0.115	0.108	0.644	0.749	0.402	0.616	1.595	1.475	4.924	1.484	0.613	0.628	0.921	1.300	3.302	nan	0.430	0.228	0.287	0.367	0.482	0.526	0.211	0.355	2.108	1.211	0.165	0.492	0.074	0.216	0.568	0.360	0.351	0.609	0.051	0.037
4010	chr19	29069853	29093133	+	0	NA	intron (NR_110759, intron 5 of 9)	MER20|DNA|hAT-Charlie	-16102	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA	nan	0.506	0.496	0.056	0.350	0.201	0.094	0.077	0.096	0.074	0.053	0.155	7.105	0.051	0.092	0.203	0.115	0.295	0.369	0.157	0.247	0.212	0.073	0.098	0.097	0.135	0.314	0.116	0.120	0.229	0.073	0.219	0.334	0.088	0.067	0.092	0.134	2.499	1.316	0.021	0.065	0.021	0.045	0.094	0.155	0.102	0.026	0.106	0.021
6864	chr6	86350324	86355871	+	0	NA	promoter-TSS (NM_001253771)	promoter-TSS (NM_001253771)	-54	NM_006372	10492	Hs.571177	NM_006372	ENSG00000135316	SYNCRIP	GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q	synaptotagmin binding cytoplasmic RNA interacting protein	protein-coding	8.701	4.569	nan	10.374	7.890	4.001	6.885	3.947	0.562	3.638	1.782	11.021	12.516	8.581	0.340	10.878	10.771	9.030	11.983	13.543	11.073	10.061	4.635	18.982	19.644	3.698	4.972	9.328	13.049	12.406	16.202	5.178	9.679	10.390	8.502	8.789	8.613	3.136	1.628	5.841	7.458	2.524	3.851	6.885	11.021	2.522	4.140	2.470	3.085
6362	chr5	91438908	91454017	+	0	NA	Intergenic	Intergenic	-767272	NR_138072	57561	Hs.24684	NM_020801	ENSG00000113369	ARRDC3	TLIMP	arrestin domain containing 3	protein-coding	nan	7.922	0.544	0.397	0.248	0.095	0.736	0.139	0.084	0.072	0.093		0.241	0.079	0.111	0.203	0.146	0.813	0.636	0.253	0.408	0.272	0.165	0.124	0.152	0.245	0.452	0.216	0.222	0.447	0.133	0.110	0.190	1.468	1.220	0.234	nan	0.268	0.185	0.058	0.064	0.592	0.037	0.736		0.007	0.047	0.071	0.083
1700	chr11	120416466	120437003	+	0	NA	intron (NM_014619, intron 1 of 20)	intron (NM_014619, intron 1 of 20)	-8411	NM_001282470	2900	Hs.538738	NM_014619	ENSG00000149403	GRIK4	EAA1|GRIK|GluK4|KA1	glutamate ionotropic receptor kainate type subunit 4	protein-coding	0.767	0.833	0.659	0.060	0.674	0.419	0.854	0.306	0.148	0.092	0.132	0.052	0.783	0.133	0.088	1.196	2.008	0.296	0.453	0.895	0.760	0.411	0.092	1.205	1.373	0.844	1.296	0.133	0.156	0.633	0.569	3.586	5.967	0.316	0.312	0.233	nan	0.910	0.577	0.179	0.165	0.042	0.078	0.854	0.052	0.090	0.112	4.944	0.118
6723	chr6	33992185	33999529	+	0	NA	intron (NM_001256813, intron 10 of 10)	intron (NM_001256813, intron 10 of 10)	-28029	NR_031681	100302123		NR_031681	ENSG00000221697	MIR1275	MIRN1275|hsa-mir-1275|mir-1275	microRNA 1275	ncRNA	nan	0.846	nan	0.133	0.836	0.568	0.485	0.092	0.132	0.271	0.179	3.936	0.498	0.059	0.085	0.606	1.432	0.248	nan	nan	0.978	3.410	0.656	0.305	0.487	0.266	0.438	0.700	1.042	1.157	0.844	0.744	0.645	1.484	1.690	1.382	3.123	1.132	0.942	0.189	0.439	0.456	4.571	0.485	3.936	0.147	0.235	0.081	1.212
4240	chr2	17794107	17811240	+	0	NA	intron (NM_003385, intron 2 of 3)	AluSz|SINE|Alu	80866	NM_003385	7447	Hs.444212	NM_003385	ENSG00000163032	VSNL1	HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1	visinin like 1	protein-coding	0.633	0.653	0.622	0.072	0.202	0.122	1.367	0.086	0.054	0.093	0.148	0.082	0.700	0.038	0.096	0.746	1.114	4.521	8.947	0.218	0.295	0.377	0.092	0.262	0.254	0.829	1.212	0.264	nan	0.507	0.260	0.477	0.512	0.067	0.053	0.179	nan	0.498	0.606	0.470	0.078	0.023	0.020	1.367	0.082	0.039	0.041	0.161	0.173
3261	chr17	7379117	7391434	+	0	NA	intron (NM_001102614, intron 1 of 1)	intron (NM_001102614, intron 1 of 1)	554	NM_001102614	643664	Hs.632234	NM_001102614	ENSG00000259224	SLC35G6	AMAC1L3|TMEM21B	solute carrier family 35 member G6	protein-coding	3.982	2.228	2.601	1.645	2.908	1.795	2.444	1.749	0.354	1.267	0.573	4.089	4.929	10.503	0.489	5.341	6.272	4.175	6.025	7.570	6.899	5.094	3.245	5.397	5.656	3.407	4.098	6.112	7.712	2.804	2.754	3.317	4.452	2.158	2.269	5.387	8.960	1.537	0.932	3.341	2.198	0.341	0.956	2.444	4.089	0.820	3.825	1.716	4.260
8116	chr9	35095440	35115578	+	0	NA	intron (NR_134455, intron 9 of 9)	FLAM_C|SINE|Alu	-2317	NM_001287031	30968	Hs.3439	NM_013442	ENSG00000165283	STOML2	HSPC108|SLP-2	stomatin like 2	protein-coding	2.033	nan	1.414	1.160	1.492	0.671	2.624	0.873	0.137	0.743	0.438	1.183	4.142	1.104	0.075	1.049	1.152	1.761	2.643	2.514	2.527	3.860	2.525	1.686	1.787	1.965	2.869	1.773	2.896	2.365	2.331	1.388	1.611	2.213	1.901	1.887	1.850	2.373	1.642	1.049	1.001	0.325	0.567	2.624	1.183	0.204	0.638	0.445	0.430
2131	chr12	107765872	107796501	+	0	NA	intron (NM_001347944, intron 1 of 14)	L2a|LINE|L2	66821	NM_001347944	121551	Hs.271272	NM_152322	ENSG00000151136	BTBD11	ABTB2B	BTB domain containing 11	protein-coding	0.938	0.797	nan	0.049	2.578	1.281	0.886	0.076	0.068	0.461	0.374	1.524	1.133	0.053	0.098	0.442	0.501	0.237	0.422	0.708	0.825	5.046	1.537	0.402	0.418	0.154	0.292	0.336	0.551	0.377	0.224	0.154	0.177	0.443	0.728	0.289	0.539	1.048	0.832	0.673	0.446	0.192	0.324	0.886	1.524	0.245	0.047	0.036	0.096
1339	chr11	20177583	20189681	+	0	NA	Intergenic	Intergenic	-1762	NM_001029865	120237	Hs.558604	NM_001029865	ENSG00000109851	DBX1	-	developing brain homeobox 1	protein-coding	0.598	0.697	0.441	0.409	1.418	0.527	0.232	0.057	0.068	0.130	0.089	0.171	0.326	0.018	0.069	0.422	0.300	0.114	0.176	0.591	0.597	1.691	0.362	0.156	0.178	0.499	0.742	0.998	1.498	0.708	0.535	0.180	0.272	0.236	0.206	0.174	0.506	0.631	0.560	0.115	0.055	0.047	6.137	0.232	0.171	0.049	0.017	0.041	0.255
2338	chr13	71485347	71526624	+	0	NA	Intergenic	Intergenic	-83288	NR_047699	100885781	Hs.372660	NR_047699	ENSG00000226846	LINC00348	-	long intergenic non-protein coding RNA 348	ncRNA	nan	1.007	0.749	0.064	0.265	0.130	0.232	0.058	0.043	0.043	0.083	0.035	0.272	0.034	0.085	0.621	0.412	2.410	1.147	0.319	0.374	nan	0.290	0.118	0.106	4.159	4.667	0.183	0.189	nan	0.298	0.143	0.272	0.103	0.085	0.710	nan	0.115	0.136	0.024	0.076	0.028	0.235	0.232	0.035	0.042	0.027	0.067	0.329
2120	chr12	105181567	105199452	+	0	NA	Intergenic	L1MC4a|LINE|L1	131963	NM_032148	84102	Hs.577463	NM_032148	ENSG00000136052	SLC41A2	SLC41A1-L1	solute carrier family 41 member 2	protein-coding	0.787	0.803	nan	0.173	0.308	0.170	0.165	0.474	0.116	0.141	0.172	0.154	0.293	0.079	0.157	0.360	0.363	0.168	0.303	0.420	0.547	0.176	0.095	0.238	0.278	3.503	3.390	0.451	0.439	0.452	0.219	0.182	0.192	0.053	0.113	0.184	0.384	0.707	0.585	0.081	0.149	0.031	0.049	0.165	0.154	0.205	0.102	0.060	0.100
8129	chr9	37616307	37624826	+	0	NA	Intergenic	Intergenic	-27930	NM_001134484	401505	Hs.130774	NM_001001790	ENSG00000175768	TOMM5	C9orf105|Tom5|bA613M10.3	translocase of outer mitochondrial membrane 5	protein-coding	1.013	nan	0.959	0.147	0.601	0.301	0.240	0.144	0.057	0.176	0.117	0.393	0.357	0.038	0.051	0.202	0.170	0.256	0.352	0.611	0.591	2.999	0.818	0.100	0.182	0.285	0.499	0.288	0.317	1.984	2.361	0.192	0.300	0.922	1.141	0.521	1.337	5.625	2.359	0.007	0.082	0.112	0.094	0.240	0.393	0.126	0.072	0.081	0.957
8335	chr9	139117543	139142959	+	0	NA	intron (NM_181701, intron 1 of 11)	intron (NM_181701, intron 1 of 11)	7436	NM_181701	169714	Hs.144073	NM_181701	ENSG00000165661	QSOX2	QSCN6L1|SOXN	quiescin sulfhydryl oxidase 2	protein-coding	nan	0.942	5.425	1.111	0.551	0.262	0.680	0.236	0.089	0.702	0.355	3.025	1.642	0.248	0.075	1.250	1.865	0.446	0.729	4.486	4.355	nan	0.554	0.357	0.314	0.902	1.286	1.464	1.958	1.829	1.786	0.609	0.944	1.316	1.561	0.687	0.669	1.307	0.743	1.638	1.083	0.490	1.359	0.680	3.025	0.692	0.497	0.315	0.136
4636	chr2	183397711	183415889	+	0	NA	Intergenic	Intergenic	-19228	NM_001258312	5136	Hs.191046	NM_005019	ENSG00000115252	PDE1A	CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A	phosphodiesterase 1A	protein-coding	0.892	0.858	0.726	0.314	0.457	0.211	0.204	0.194	0.107	0.113	0.154	0.185	0.318	0.036	0.080	0.314	0.204	0.182	0.214	0.240	0.352	0.413	0.183	0.365	0.348	nan	5.137	0.862	0.901	0.377	0.186	0.083	0.217	0.113	0.166	0.330	nan	0.288	0.287	0.031	0.054	0.011	0.091	0.204	0.185	0.086	0.083	0.049	0.129
6664	chr6	22140473	22153297	+	0	NA	intron (NR_034143, intron 2 of 2)	intron (NR_034143, intron 2 of 2)	537	NR_034143	729177	Hs.730673	NR_034143	ENSG00000260455	NBAT1	CASC14|NBAT-1	neuroblastoma associated transcript 1	ncRNA	2.974	1.392	nan	4.286	0.966	0.541	1.641	1.738	0.151	1.107	0.529	5.622	nan	0.659	0.113	0.808	1.109	1.031	nan	3.935	3.595	nan	1.492	0.562	0.587	1.664	2.610	3.277	3.401	1.057	0.536	0.360	0.788	3.488	3.782	0.682	1.460	1.470	0.812	3.023	0.234	0.847	0.043	1.641	5.622	0.074	1.611	0.484	0.741
2147	chr12	113493791	113518297	+	0	NA	intron (NM_004416, intron 1 of 8)	intron (NM_004416, intron 1 of 8)	10382	NM_004416	1840	Hs.372152	NM_004416	ENSG00000135144	DTX1	hDx-1	deltex E3 ubiquitin ligase 1	protein-coding	nan	nan	1.265	0.885	0.804	0.419	0.605	0.080	0.072	0.396	0.236	0.826	1.242	0.261	0.100	0.410	0.398	0.082	0.185	nan	nan	nan	0.755	0.215	0.253	0.634	1.059	nan	nan	1.116	0.759	0.328	0.433	0.796	0.657	0.382	0.599	nan	1.610	1.736	0.231	0.120	0.257	0.605	0.826	0.298	0.711	0.064	0.122
1581	chr11	93469908	93479282	+	0	NA	promoter-TSS (NM_001286067)	promoter-TSS (NM_001286067)	108	NM_024116	79101	Hs.355750	NM_024116	ENSG00000166012	TAF1D	JOSD3|RAFI41|TAF(I)41|TAFI41	TATA-box binding protein associated factor, RNA polymerase I subunit D	protein-coding	1.943	nan	1.480	2.608	2.628	1.300	1.774	0.563	0.119	1.445	0.771	2.473	5.222	2.846	0.179	10.239	9.677	3.896	nan	4.936	5.096	5.227	2.752	13.864	14.357	3.596	4.376	5.122	6.801	5.345	5.744	4.746	7.514	3.747	4.401	5.523	nan	2.663	1.420	1.874	2.099	0.632	1.298	1.774	2.473	0.599	1.474	2.250	2.050
3997	chr19	18524652	18551630	+	0	NA	intron (NM_001009998, intron 1 of 16)	intron (NM_001009998, intron 1 of 16)	7995	NM_001009998	170463	Hs.515259	NM_032627	ENSG00000130511	SSBP4	-	single stranded DNA binding protein 4	protein-coding	3.708	1.874	1.676	1.220	3.900	1.880	2.904	0.389	0.084	0.613	0.333	1.206	2.335	2.669	0.096	1.327	2.277	1.107	1.868	2.244	2.135	3.083	1.381	1.711	1.854	0.935	1.464	2.904	4.422	2.896	2.700	0.836	1.496	2.138	1.749	3.395	4.292	2.220	1.186	1.660	1.151	0.490	0.256	2.904	1.206	0.921	1.402	0.856	1.380
1507	chr11	71789442	71803381	+	0	NA	intron (NM_001145308, intron 1 of 6)	L2c|LINE|L2	-4672	NM_006185	4926	Hs.325978	NM_006185	ENSG00000137497	NUMA1	NMP-22|NUMA	nuclear mitotic apparatus protein 1	protein-coding	nan	1.641	2.207	2.518	1.971	0.977	2.346	0.662	0.115	0.822	0.439	1.280	4.438	1.070	0.143	2.122	2.457	1.904	2.439	4.193	4.492	5.493	2.228	6.585	6.648	3.755	4.894	4.310	4.757	3.263	2.490	1.023	1.689	2.677	3.026	1.905	4.002	2.149	1.206	2.066	1.930	0.473	1.820	2.346	1.280	0.615	1.090	0.463	1.022
1604	chr11	102469245	102489189	+	0	NA	intron (NM_004771, intron 5 of 9)	MIRc|SINE|MIR	16846	NM_004771	9313	Hs.591946	NM_004771	ENSG00000137674	MMP20	AI2A2|MMP-20	matrix metallopeptidase 20	protein-coding	0.539	0.786	0.483	0.085	0.336	0.210	0.449	0.259	0.045	0.150	0.178	0.042	0.482	0.919	0.140	0.501	0.527	3.402	5.507	0.476	0.477	0.175	0.066	0.588	0.630	0.203	0.310	0.228	0.274	0.337	0.138	0.417	0.477	0.089	0.130	0.143	0.217	0.334	0.457	0.028	0.098	0.015	0.121	0.449	0.042	0.010	0.051	0.085	0.081
6163	chr5	8617566	8630811	+	0	NA	Intergenic	L1MB7|LINE|L1	163150	NR_039663	100616142		NR_039663	ENSG00000247516	MIR4458	mir-4458	microRNA 4458	ncRNA	0.775	1.053	2.872	1.807	0.341	0.238	0.116	0.214	0.204	2.688	1.150	0.127	0.820	0.057	0.117	0.422	0.240	0.192	nan	1.701	1.604	0.100	0.078	0.071	0.084	0.297	0.432	nan	1.690	nan	2.186	0.109	0.230	1.941	1.713	0.512	1.540	3.589	nan	0.304	1.610	0.258	0.114	0.116	0.127	0.465	0.107	0.037	0.656
7589	chr8	10189339	10194877	+	0	NA	intron (NM_001199729, intron 6 of 6)	CpG	-139967	NR_120604	101929191	Hs.595262	NR_120604	ENSG00000253641	LINCR-0001	-	uncharacterized LINCR-0001	ncRNA	2.579	3.525	nan	3.482	5.062	2.524	5.297	0.348	0.029	2.243	1.269	7.737	0.152	1.709	0.094	6.298	6.963	3.516	3.485	15.154	nan	0.265	0.097	2.844	2.972	1.814	2.236	5.643	6.818	5.839	7.006	2.825	4.600	6.236	5.086	2.796	6.101	5.070	2.818	1.561	3.670	1.325	1.647	5.297	7.737	1.337	0.607	3.704	2.102
4592	chr2	171778064	171788384	+	0	NA	Intergenic	AluJb|SINE|Alu	-1724	NM_001201428	26003	Hs.431317	NM_015530	ENSG00000115806	GORASP2	GOLPH6|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	2.665	2.498	3.600	3.122	1.945	1.178	1.293	0.870	0.124	1.090	0.669	1.670	3.779	1.419	0.087	2.160	2.439	2.680	3.696	2.484	2.376	4.537	1.769	10.314	10.634	1.626	2.334	7.648	10.352	2.793	3.399	1.938	2.771	1.573	1.719	3.621	4.033	1.651	0.872	1.793	0.915	0.147	0.751	1.293	1.670	0.480	0.662	0.808	0.890
4096	chr19	45244625	45259591	+	0	NA	exon (NM_005178, exon 1 of 9)	exon (NM_005178, exon 1 of 9)	130	NM_005178	602	Hs.31210	NM_005178	ENSG00000069399	BCL3	BCL4|D19S37	B-cell CLL/lymphoma 3	protein-coding	1.403	2.189	1.159	0.771	0.831	0.405	0.605	3.734	0.582	0.545	0.195	0.942	1.842	3.015	0.156	0.539	1.025	1.913	3.969	1.385	1.224	2.013	0.624	3.832	3.918	0.851	1.420	3.947	8.378	1.128	0.809	0.675	0.892	0.740	0.713	0.922	2.080	1.773	1.090	0.358	0.077	0.103	0.026	0.605	0.942	0.272	4.995	0.370	0.404
8272	chr9	128291555	128312790	+	0	NA	intron (NM_001006618, intron 7 of 7)	intron (NM_001006618, intron 7 of 7)	167341	NM_001006617	79109	Hs.495138	NM_024117	ENSG00000119487	MAPKAP1	JC310|MIP1|SIN1|SIN1b|SIN1g	mitogen-activated protein kinase associated protein 1	protein-coding	nan	nan	1.017	0.419	0.495	0.220	0.688	1.072	0.121	0.332	0.200	0.727	nan	0.046	0.089	0.194	0.174	0.364	0.501	0.590	0.752	0.592	0.138	0.333	0.335	0.356	nan	1.124	1.142	0.635	0.339	0.139	0.259	2.525	3.571	0.453	0.854	nan	0.608	0.756	0.247	0.786	0.056	0.688	0.727	0.150	0.334	0.016	0.271
1140	chr10	73078738	73108449	+	0	NA	intron (NR_033414, intron 2 of 3)	intron (NR_033414, intron 2 of 3)	14583	NM_018344	55315	Hs.438419	NM_018344	ENSG00000198246	SLC29A3	ENT3|HCLAP|HJCD|PHID	solute carrier family 29 member 3	protein-coding	1.033	nan	0.807	0.938	0.375	0.173	0.194	0.089	0.076	0.169	0.142	0.545	2.876	0.156	0.079	0.843	1.055	0.475	0.707	1.642	1.267	2.870	0.701	0.521	0.545	0.386	0.652	3.326	nan	0.696	0.786	0.475	0.656	0.429	0.521	0.673	nan	0.656	0.475	1.983	2.236	0.080	0.120	0.194	0.545	0.382	0.383	0.213	0.684
4736	chr2	223887913	223894277	+	0	NA	Intergenic	Intergenic	-25553	NM_080671	23704	Hs.348522	NM_080671	ENSG00000152049	KCNE4	MIRP3	potassium voltage-gated channel subfamily E regulatory subunit 4	protein-coding	nan	0.665	1.098	0.564	0.622	0.316	0.268	0.383	0.075	0.398	0.282	0.507	nan	0.076	0.109	0.543	0.270	0.182	0.431	0.266	0.173	2.728	0.709	0.267	0.317	0.496	0.677	4.352	nan	0.370	0.169	0.074	0.218	0.533	1.377	0.396	nan	1.343	0.746	0.080	0.112	0.090	0.074	0.268	0.507	0.046	6.207	0.062	0.157
3417	chr17	41545039	41562946	+	0	NA	Intergenic	Intergenic	-7241	NM_001322219	1659	Hs.463105	NM_004941	ENSG00000067596	DHX8	DDX8|HRH1|PRP22|PRPF22	DEAH-box helicase 8	protein-coding	2.556	1.703	nan	0.997	1.138	0.698	0.636	0.615	0.190	0.529	0.429	0.555	1.574	0.407	0.104	1.039	0.890	1.152	1.761	1.675	nan	1.232	0.452	2.026	2.118	2.111	2.583	1.070	nan	3.877	2.966	0.699	1.012	2.256	3.297	1.349	5.163	1.173	0.749	0.358	0.418	1.158	0.311	0.636	0.555	0.546	0.554	0.228	1.595
4922	chr20	31339975	31352731	+	0	NA	Intergenic	Intergenic	-3838	NM_001207055	1789	Hs.643024	NM_006892	ENSG00000088305	DNMT3B	ICF|ICF1|M.HsaIIIB	DNA methyltransferase 3 beta	protein-coding	1.676	1.880	1.382	1.363	0.595	0.250	0.602	0.443	0.176	1.110	0.619	1.222	2.531	0.622	0.116	1.081	1.497	0.712	1.074	1.039	nan	6.100	1.359	1.546	1.699	0.617	1.111	2.281	2.641	1.193	1.048	0.578	1.100	1.560	1.845	0.664	nan	0.830	0.515	0.791	1.058	0.202	0.535	0.602	1.222	0.148	0.549	0.241	0.173
275	chr1	44171782	44189259	+	0	NA	intron (NR_125986, intron 3 of 3)	intron (NR_125986, intron 3 of 3)	7316	NM_174967	6487	Hs.597915	NM_006279	ENSG00000126091	ST3GAL3	EIEE15|MRT12|SIAT6|ST3GALII|ST3GalIII|ST3N	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	nan	1.326	nan	0.698	0.815	0.415	0.884	1.059	0.259	0.412	0.411	1.922	2.007	1.008	0.142	0.707	0.966	0.709	1.081	1.583	1.719	0.929	0.233	0.652	0.631	1.552	nan	nan	4.799	2.727	2.288	0.938	nan	0.429	0.484	2.154	5.205	0.999	0.698	0.537	0.793	0.093	0.672	0.884	1.922	0.229	0.626	0.508	2.192
3626	chr17	80737363	80771635	+	0	NA	intron (NM_005993, intron 7 of 38)	intron (NM_005993, intron 7 of 38)	43432	NM_024702	79755	Hs.464391	NM_024702	ENSG00000141579	ZNF750	ZFP750	zinc finger protein 750	protein-coding	0.810	0.730	0.846	0.317	0.562	0.232	0.531	0.157	0.127	0.397	0.284	5.393	4.718	0.133	0.090	0.530	nan	0.438	0.707	nan	2.347	0.451	0.180	0.490	0.492	0.395	0.700	3.849	5.524	0.145	0.127	0.376	0.491	0.138	0.198	0.222	0.480	1.212	0.599	1.840	3.239	0.036	0.095	0.531	5.393	0.073	0.118	0.089	0.091
3314	chr17	18301214	18331926	+	0	NA	intron (NR_104343, intron 1 of 1)	intron (NR_104343, intron 1 of 1)	2097	NR_104343	400579	Hs.375092	NR_104343	ENSG00000220161	LINC02076	-	long intergenic non-protein coding RNA 2076	ncRNA	1.308	1.388	1.072	0.524	4.538	2.516	2.616	0.465	0.163	0.580	0.297	0.862	1.200	0.555	0.075	1.545	2.386	0.425	nan	1.652	1.415	4.733	1.216	0.737	0.741	1.439	1.960	2.076	2.328	nan	2.764	0.807	1.161	2.340	2.265	1.692	2.277	0.943	0.572	0.576	0.611	1.092	0.472	2.616	0.862	0.636	0.568	0.508	0.752
2208	chr12	128798670	128805377	+	0	NA	intron (NM_001136103, intron 1 of 8)	intron (NM_001136103, intron 1 of 8)	23386	NR_037406	100500817		NR_037406	ENSG00000265635	MIR3612	-	microRNA 3612	ncRNA	1.358	0.577	0.677	0.052	0.763	0.263	1.072	0.034	0.048	0.140	0.209	0.089	0.232	0.021	0.096	4.824	4.514	12.866	9.907	0.479	0.588	nan	0.182	0.199	0.128	0.092	0.195	0.392	0.437	0.475	0.197	2.054	3.066	4.246	4.693	0.244	0.486	0.911	0.780	0.582	0.066	1.520	0.024	1.072	0.089	0.040	0.031	0.825	0.168
4459	chr2	106406367	106431742	+	0	NA	intron (NM_001004722, intron 1 of 3)	MSTB1|LTR|ERVL-MaLR	-49150	NM_001004720	8440	Hs.529244	NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding	0.864	nan	1.647	1.764	0.542	0.240	0.455	0.378	0.082	0.114	0.098	0.462	1.274	0.043	0.080	1.178	1.705	0.437	0.605	4.678	3.788	2.093	0.606	0.595	0.658	0.662	0.952	2.472	2.681	0.501	0.375	0.632	0.873	0.072	0.107	0.554	0.987	0.482	0.311	0.638	0.281	0.011	0.187	0.455	0.462	0.275	0.921	0.375	0.279
1731	chr11	129142176	129170300	+	0	NA	Intergenic	Intergenic	-89643	NM_003658	8538	Hs.591944	NM_003658	ENSG00000043039	BARX2	-	BARX homeobox 2	protein-coding	0.956	1.081	2.540	2.088	1.327	0.650	0.474	0.106	0.017	1.043	0.779	1.532	3.807	1.220	0.119	1.791	1.780	0.812	0.776	1.690	1.680	2.910	0.859	0.892	0.850	0.843	1.171	6.739	7.500	1.090	1.173	2.594	4.950	1.936	1.702	0.763	nan	2.278	1.185	0.458	0.656	0.373	0.181	0.474	1.532	0.117	1.682	3.131	0.210
7158	chr7	10973492	10982240	+	0	NA	intron (NM_002489, intron 2 of 3)	intron (NM_002489, intron 2 of 3)	1947	NM_002489	4697	Hs.50098	NM_002489	ENSG00000189043	NDUFA4	CI-9k|CI-MLRQ|MLRQ	NDUFA4, mitochondrial complex associated	protein-coding	nan	2.374	nan	3.480	2.847	1.706	2.596	2.608	0.123	0.951	0.453	3.370	5.159	3.088	0.224	nan	5.660	4.237	5.398	6.083	5.775	4.930	3.064	16.709	17.894	3.234	3.845	6.714	8.021	3.167	2.645	3.379	5.297	4.605	4.967	3.879	4.693	3.110	1.914	2.245	2.001	0.872	1.344	2.596	3.370	0.576	1.799	2.234	1.370
5820	chr4	2794685	2821355	+	0	NA	intron (NM_001122681, intron 1 of 12)	intron (NM_001122681, intron 1 of 12)	-5926	NM_001145855	6452	Hs.167679	NM_003023	ENSG00000087266	SH3BP2	3BP-2|3BP2|CRBM|CRPM|RES4-23	SH3 domain binding protein 2	protein-coding	1.837	1.086	nan	1.469	0.354	0.181	0.666	0.170	0.049	0.906	0.300	0.796	1.241	0.382	0.055	1.561	2.538	1.105	1.682	1.227	1.064	nan	0.663	1.752	1.751	0.476	0.736	1.647	2.059	0.866	0.914	0.940	1.198	0.551	0.520	0.533	0.598	nan	0.966	0.644	0.991	0.089	0.318	0.666	0.796	0.352	0.482	0.215	0.217
1500	chr11	70698173	70710561	+	0	NA	intron (NM_012309, intron 8 of 22)	intron (NM_012309, intron 8 of 22)	-4528	NR_073536	220070	Hs.326766	NM_145308	ENSG00000171671	SHANK2-AS3	C11orf76	SHANK2 antisense RNA 3	ncRNA	nan	1.279	0.710	0.043	1.623	1.008	1.090	0.049	0.078	0.988	0.445	2.541	3.718	0.035	0.084	0.992	1.373	0.219	0.283	2.510	3.212	4.053	1.348	0.388	0.442	0.381	0.619	5.189	4.357	0.251	0.181	0.410	0.425	3.244	2.348	0.145	0.279	3.091	1.582	6.770	2.849	1.093	0.045	1.090	2.541	0.094	0.065	0.120	0.049
4275	chr2	28611955	28621228	+	0	NA	exon (NM_005253, exon 1 of 4)	exon (NM_005253, exon 1 of 4)	812	NM_005253	2355	Hs.220971	NM_005253	ENSG00000075426	FOSL2	FRA2	FOS like 2, AP-1 transcription factor subunit	protein-coding	3.048	2.283	3.259	4.655	4.211	2.047	3.642	4.792	0.320	1.703	0.792	2.142	14.570	8.455	0.187	1.654	2.721	3.181	8.427	3.361	2.944	4.386	1.587	7.809	7.891	2.193	3.084	4.049	nan	4.327	5.719	0.753	1.754	2.702	2.109	0.319	0.637	1.655	0.860	4.068	2.200	0.492	4.293	3.642	2.142	2.192	3.770	0.313	0.533
4812	chr20	3138547	3155306	+	0	NA	exon (NM_001282533, exon 4 of 6)	exon (NM_001282533, exon 4 of 6)	-6370	NM_199415	22888	Hs.654646	NM_014948	ENSG00000185019	UBOX5	RNF37|UBCE7IP5|UIP5|hUIP5	U-box domain containing 5	protein-coding	2.213	3.212	4.282	2.703	1.225	0.607	0.938	0.415	0.148	0.627	0.287	2.988	4.514	0.647	0.080	2.589	2.891	1.424	2.130	3.650	3.237	4.158	1.315	3.876	4.292	2.716	3.467	13.070	12.189	3.027	3.225	2.171	2.692	1.879	1.677	1.687	2.507	1.903	0.865	4.097	5.278	0.269	0.319	0.938	2.988	1.085	2.709	0.822	0.554
4103	chr19	46270325	46287514	+	0	NA	intron (NM_001081560, intron 8 of 14)	AluSz|SINE|Alu	3958	NM_001288765	1760	Hs.631596	NM_004409	ENSG00000104936	DMPK	DM|DM1|DM1PK|DMK|MDPK|MT-PK	dystrophia myotonica protein kinase	protein-coding	1.938	1.032	4.386	3.139	2.265	1.137	0.768	1.323	0.226	2.257	0.849	3.583	2.818	2.626	0.123	0.661	1.059	1.138	1.658	5.625	5.662	3.570	0.723	3.999	4.030	1.270	1.991	5.362	5.247	0.918	0.900	0.439	0.727	1.660	1.614	1.022	1.705	2.442	1.266	3.268	2.766	0.353	0.542	0.768	3.583	0.308	1.816	0.212	0.360
4175	chr2	2321284	2338416	+	0	NA	promoter-TSS (NM_001329847)	promoter-TSS (NM_001329847)	93	NM_001329847	23040	Hs.434418	NM_015025	ENSG00000186487	MYT1L	MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L	myelin transcription factor 1 like	protein-coding	0.736	1.235	0.606	0.258	6.848	3.606	3.911	0.083	0.075	4.952	2.703	6.345	22.148	0.038	0.098	3.735	5.806	0.143	0.120	12.578	11.806	7.053	5.021	0.121	0.107	5.504	6.387	5.916	7.583	7.938	9.625	0.829	1.561	5.496	4.501	2.395	2.660	5.305	2.823	6.881	0.406	1.128	1.207	3.911	6.345	2.624	2.835	1.028	0.080
5693	chr3	176907987	176920904	+	0	NA	promoter-TSS (NM_001321193)	promoter-TSS (NM_001321193)	-173	NM_001321195	79718	Hs.714201	NM_024665	ENSG00000177565	TBL1XR1	C21|DC42|IRA1|MRD41|TBLR1	transducin beta like 1 X-linked receptor 1	protein-coding	4.530	3.108	3.287	6.003	6.443	3.552	2.790	3.166	0.386	3.696	1.441	3.684	5.021	4.822	0.160	3.010	3.748	6.509	12.459	5.922	4.756	5.876	2.778	8.745	8.287	3.447	4.073	5.605	6.433	5.741	6.430	1.420	3.358	4.914	4.610	5.848	6.608	2.476	1.291	2.184	2.102	1.536	4.144	2.790	3.684	0.850	1.688	2.723	3.001
8213	chr9	97621427	97638317	+	0	NA	intron (NM_032823, intron 5 of 14)	intron (NM_032823, intron 5 of 14)	57628	NR_031755	100313780		NR_031755	ENSG00000252153	MIR2278	mir-2278	microRNA 2278	ncRNA	1.028	nan	0.921	0.250	0.882	0.411	0.471	1.625	0.219	1.069	0.470	1.361	0.656	0.090	0.079	0.221	0.226	2.322	7.786	0.513	0.690	0.741	0.325	0.175	0.121	0.319	0.555	4.304	3.194	1.706	1.130	0.401	0.627	1.118	1.350	1.044	1.914	2.802	1.679	0.833	0.127	0.213	0.137	0.471	1.361	0.104	2.946	0.340	0.380
4073	chr19	41902068	41905393	+	0	NA	promoter-TSS (NM_001164783)	promoter-TSS (NM_001164783)	36	NM_001164783	593	Hs.433307	NM_000709	ENSG00000248098	BCKDHA	BCKDE1A|MSU|MSUD1|OVD1A	branched chain keto acid dehydrogenase E1, alpha polypeptide	protein-coding	5.203	2.657	4.535	5.882	4.770	1.965	3.917	3.488	0.053	1.831	0.922	3.027	5.384	3.325	0.194	7.446	7.034	6.399	9.344	7.258	10.283	9.460	6.902	17.828	20.195	5.769	7.134	9.117	12.870	17.682	16.904	9.898	12.358	5.540	7.729	10.430	9.421	5.709	3.963	3.627	7.356	0.975	1.259	3.917	3.027	1.428	1.720	3.912	3.923
3410	chr17	40819655	40833390	+	0	NA	intron (NM_024927, intron 1 of 12)	intron (NM_024927, intron 1 of 12)	1586	NR_073574	79990	Hs.632251	NM_024927	ENSG00000068137	PLEKHH3	-	pleckstrin homology, MyTH4 and FERM domain containing H3	protein-coding	3.765	3.540	nan	5.016	3.713	2.055	2.837	2.811	0.613	2.636	1.284	2.875	8.097	2.462	0.080	2.204	3.528	1.921	3.223	3.750	nan	4.477	1.588	7.132	7.073	1.505	1.866	6.214	nan	3.136	2.574	1.282	2.628	2.986	2.654	1.924	3.548	2.081	0.915	6.224	3.793	1.145	2.274	2.837	2.875	1.223	3.041	2.727	1.172
1295	chr11	9583567	9599685	+	0	NA	Intergenic	Intergenic	-3602	NM_003390	7465	Hs.249441	NM_003390	ENSG00000166483	WEE1	WEE1A|WEE1hu	WEE1 G2 checkpoint kinase	protein-coding	2.408	5.230	2.904	4.171	2.632	1.282	4.119	2.114	0.259	1.965	0.801	4.836	11.065	3.283	0.120	3.127	3.495	4.435	12.073	4.404	4.399	4.499	4.376	4.655	4.478	2.213	2.891	3.449	7.508	2.806	2.759	1.966	4.922	4.267	6.317	2.971	3.871	1.923	1.099	2.964	3.259	1.488	1.213	4.119	4.836	0.169	0.825	2.411	1.172
2832	chr15	31616662	31622507	+	0	NA	exon (NM_001302461, exon 1 of 2)	exon (NM_001302461, exon 1 of 2)	526	NM_015995	51621	Hs.376443	NM_015995	ENSG00000169926	KLF13	BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel like factor 13	protein-coding	4.373	nan	nan	4.592	6.085	3.273	3.931	3.074	0.327	3.644	1.490	9.857	11.395	2.963	0.093	5.424	7.739	3.739	6.008	8.451	6.073	5.498	1.352	8.284	7.477	1.753	2.412	5.228	9.041	5.678	7.974	2.304	5.036	7.181	5.531	1.818	2.266	0.936	0.532	3.511	6.340	2.992	4.787	3.931	9.857	2.285	4.486	2.511	0.785
5403	chr3	73827169	73844071	+	0	NA	Intergenic	Intergenic	-161548	NM_015009	23024	Hs.660347	NM_015009	ENSG00000121440	PDZRN3	LNX3|SEMACAP3|SEMCAP3	PDZ domain containing ring finger 3	protein-coding	0.555	0.576	0.628	0.067	0.202	0.124	0.168	0.071	0.076	0.074	0.102	0.184	0.266	0.019	0.062	1.504	1.360	10.316	nan	0.280	0.366	0.788	0.239	0.118	0.142	0.502	0.585	0.220	0.263	0.322	0.130	0.816	0.583	0.080	0.126	0.161	nan	0.714	0.482	0.026	0.094	0.028	0.024	0.168	0.184		0.066	0.123	0.095
3281	chr17	10730155	10737546	+	0	NA	intron (NM_001101387, intron 1 of 1)	MIRb|SINE|MIR	7568	NM_001101387	644139	Hs.553909	NM_001101387	ENSG00000233670	PIRT	-	phosphoinositide interacting regulator of transient receptor potential channels	protein-coding	0.643	0.478	0.675	0.082	0.149	0.073	0.035	0.061	0.087	0.043	0.089	0.081	0.228	0.014	0.018	1.495	2.356	12.099	nan	0.155	0.291	0.080	0.072	0.301	0.269	0.101	0.166	0.142	0.115	nan	0.098	0.573	0.682	0.017	0.020	0.312	0.629	0.089	0.083	0.023	0.047		0.033	0.035	0.081		0.028	0.228	0.108
6018	chr4	132112160	132137450	+	0	NA	Intergenic	Intergenic	-561188	NR_125883	101927305	Hs.507924	NR_125883		LOC101927305	-	uncharacterized LOC101927305	ncRNA	nan	nan	0.677	0.125	0.305	0.147	0.087	0.071	0.095	0.360	0.290	0.330	0.191	0.030	0.058	0.230	0.168	0.186	0.212	0.231	0.304	0.172	0.057	0.305	0.292	4.138	4.383	0.256	0.237	0.767	0.612	0.129	0.277	0.078	0.101	0.147	nan	0.136	0.172	0.018	0.077	0.022	0.068	0.087	0.330	0.204	0.189	0.059	0.019
4055	chr19	39880324	39883111	+	0	NA	promoter-TSS (NM_001317770)	promoter-TSS (NM_001317770)	118	NM_001256826	54623	Hs.466714	NM_019088	ENSG00000006712	PAF1	F23149_1|PD2	PAF1 homolog, Paf1/RNA polymerase II complex component	protein-coding	6.837	5.085	5.638	11.808	7.990	3.790	4.661	2.578	0.676	2.912	1.251	6.088	24.552	3.848	0.235	5.894	6.452	7.633	10.725	12.731	11.315	12.993	8.673	20.491	22.451	5.994	6.857	8.886	12.771	10.202	10.900	6.943	10.029	8.130	7.827	6.624	8.548	5.198	2.582	4.784	6.579	1.806	2.677	4.661	6.088	2.495	4.639	2.684	2.439
3271	chr17	8149028	8154199	+	0	NA	promoter-TSS (NR_046431)	promoter-TSS (NR_046431)	-200	NM_025099	80169	Hs.156055	NM_025099	ENSG00000178971	CTC1	AAF-132|AAF132|C17orf68|CRMCC|tmp494178	CST telomere replication complex component 1	protein-coding	7.719	3.462	3.907	4.228	5.350	2.407	4.684	1.334	0.744	2.265	1.100	5.981	8.174	2.209	0.127	6.913	6.193	6.023	8.930	9.908	6.401	15.136	6.950	13.284	13.516	4.394	6.095	9.499	14.418	4.691	5.790	1.912	2.896	7.493	6.274	10.134	12.484	1.816	0.979	2.143	3.434	1.043	1.171	4.684	5.981	2.153	4.124	0.940	4.037
7408	chr7	101761141	101769667	+	0	NA	intron (NM_181500, intron 8 of 22)	intron (NM_181500, intron 8 of 22)	-162949	NM_020979	10603	Hs.489448	NM_020979	ENSG00000160999	SH2B2	APS	SH2B adaptor protein 2	protein-coding	nan	0.553	0.758	0.372	0.422	0.217	0.239	0.466	0.131	0.386	0.194	0.203	0.424	0.189	0.144	2.946	3.696	7.062	8.962	0.370	0.514	2.301	0.668	0.232	0.259	0.407	0.858	1.291	1.004	0.401	0.215	2.078	2.757	0.136	0.246	0.269	nan	1.312	0.690	0.165	0.198	0.034	0.249	0.239	0.203	0.069	0.262	1.175	0.186
6219	chr5	31045571	31050838	+	0	NA	Intergenic	Intergenic	-145558	NM_004932	1004	Hs.124776	NM_004932	ENSG00000113361	CDH6	CAD6|KCAD	cadherin 6	protein-coding	0.733	1.124	nan	0.200	0.182	0.182	2.882	0.099	0.168	1.462	0.800	0.045	8.873	0.143	0.100	0.349	0.351	0.161	0.242	0.235	0.368	5.423	1.651	0.115	0.094	0.555	0.712	0.390	0.339	0.549	0.150	0.151	0.204	6.421	11.198	0.426	1.107	0.566	0.403		0.085	2.763		2.882	0.045		0.365		0.253
8236	chr9	111603656	111611588	+	0	NA	Intergenic	Intergenic	10653	NM_006686	10880	Hs.534390	NM_006686	ENSG00000148156	ACTL7B	Tact1	actin like 7B	protein-coding	1.740	1.827	nan	0.384	0.513	0.428	0.312	0.142	0.101	0.256	0.225	0.755	1.846	0.027	0.065	0.160	0.096	0.355	0.491	1.187	1.180	5.601	1.370	0.236	0.255	0.089	0.333	0.615	nan	2.585	3.277	0.111	0.114	5.845	6.543	1.064	2.589	nan	2.330	1.290	0.450	1.731	0.617	0.312	0.755	0.378	0.124	0.025	1.340
4807	chr20	2081401	2085997	+	0	NA	exon (NM_080836, exon 2 of 4)	exon (NM_080836, exon 2 of 4)	1171	NM_080836	140901	Hs.100057	NM_080836	ENSG00000125834	STK35	CLIK1|STK35L1	serine/threonine kinase 35	protein-coding	5.667	8.075	4.317	8.507	6.518	2.732	5.463	3.732	0.400	2.241	1.314	6.607	13.572	4.576	0.115	15.386	15.989	6.873	10.338	12.366	13.716	11.942	8.586	14.874	15.851	6.464	7.952	13.232	18.792	13.102	13.301	10.593	16.072	9.205	9.120	8.260	6.103	2.127	1.367	3.790	8.811	1.900	2.261	5.463	6.607	2.031	5.505	3.660	2.042
2938	chr15	70640120	70655691	+	0	NA	Intergenic	Intergenic	231040	NR_135691	101929151	Hs.434703	NR_135691	ENSG00000280639	LOC101929151	-	uncharacterized LOC101929151	ncRNA	0.868	0.856	0.721	0.777	0.805	0.435	3.431	0.109	0.094	0.100	0.154	1.156	1.822	0.119	0.086	0.530	0.718	0.289	0.560	0.591	0.781	2.194	0.399	0.189	0.172	0.238	0.373	2.563	2.109	1.234	0.696	0.540	0.700	0.200	0.143	0.389	0.992	0.589	0.375	0.414	0.968	0.085	0.204	3.431	1.156	0.865	0.117	0.357	0.397
3915	chr18	76822077	76832002	+	0	NA	Intergenic	Intergenic	-2236	NM_001306085	374868	Hs.465475	NM_198531	ENSG00000166377	ATP9B	ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1	ATPase phospholipid transporting 9B (putative)	protein-coding	nan	nan	1.420	5.281	0.902	0.451	1.340	0.266	0.064	0.604	0.348	5.640	2.389	0.514	0.094	1.557	1.019	1.489	2.328	4.459	nan	13.173	5.216	2.983	2.993	0.566	0.626	5.337	nan	2.741	3.024	0.551	0.829	1.826	2.866	1.549	1.681	1.846	1.039	0.428	0.468	0.327	0.996	1.340	5.640	0.147	0.616	0.114	0.426
5126	chr21	40307107	40382177	+	0	NA	Intergenic	LTR85a|LTR|Gypsy?	5058	NR_109962	101928435	Hs.385528	NR_109962	ENSG00000232837	LINC01700	-	long intergenic non-protein coding RNA 1700	ncRNA	nan	0.696	0.896	1.849	1.602	0.778	0.786	0.434	0.085	0.632	0.386	5.317	2.908	0.051	0.076	0.451	0.431	0.293	0.480	4.110	4.595	nan	0.786	0.289	0.284	0.136	nan	6.481	6.902	0.513	0.336	0.265	0.404	0.657	0.523	0.154	0.246	3.631	1.886	1.104	2.910	0.123	0.295	0.786	5.317	0.115	1.734	0.194	0.116
4516	chr2	138681628	138698914	+	0	NA	Intergenic	AluSc|SINE|Alu	-4769	NR_120402	101928273	Hs.560928	NR_120402		LOC101928273	-	uncharacterized LOC101928273	ncRNA	nan	0.860	nan	0.209	0.279	0.117	0.192	0.938	0.148	0.108	0.130	0.202	0.533	0.032	0.087	0.274	0.165	0.449	1.766	0.199	0.347	1.550	0.454	0.269	0.271	0.700	1.460	0.421	nan	1.337	1.123	0.142	0.135	0.307	0.695	1.359	5.160	0.307	0.355	0.250	0.052	0.071	0.069	0.192	0.202	0.134	0.012	0.046	3.168
4136	chr19	50174974	50184276	+	0	NA	promoter-TSS (NM_001207042)	promoter-TSS (NM_001207042)	-784	NM_001207042	3276	Hs.20521	NM_001536	ENSG00000126457	PRMT1	ANM1|HCP1|HRMT1L2|IR1B4	protein arginine methyltransferase 1	protein-coding	3.338	1.723	3.069	2.148	4.251	2.477	2.119	1.341	0.225	1.129	0.615	2.307	3.358	3.263	0.145	2.588	2.622	2.469	4.036	3.619	4.122	6.281	3.173	7.652	8.248	2.231	3.057	5.767	7.412	7.671	7.046	1.760	2.692	4.926	4.994	4.573	8.174	2.805	1.582	1.488	4.312	0.983	0.882	2.119	2.307	1.031	1.302	0.883	2.157
5151	chr21	44592525	44607351	+	0	NA	Intergenic	Intergenic	9592	NM_001320719	102724652	Hs.184085	NM_001314050	ENSG00000276076	LOC102724652	CRYAA	alpha-crystallin A chain	protein-coding	nan	1.941	2.404	1.007	2.361	1.261	1.459	0.154	0.022	0.243	0.212	0.873	6.519	0.073	0.075	2.719	4.075	4.443	4.308	2.192	1.999	nan	1.066	11.426	12.652	0.824	nan	2.214	3.161	1.239	1.045	1.521	3.185	2.338	1.858	0.245	0.300	2.200	1.254	2.710	1.034	0.388	0.415	1.459	0.873	0.439	1.947	1.106	0.141
3801	chr18	47922890	47937638	+	0	NA	Intergenic	HERVS71-int|LTR|ERV1	28872	NM_001039535	220134	Hs.134726	NM_145060	ENSG00000154839	SKA1	C18orf24	spindle and kinetochore associated complex subunit 1	protein-coding	nan	1.990	1.207	0.894	0.354	0.282	2.023	0.060	0.045	0.128	0.113	0.471	1.044	0.007	0.097	0.348	0.337	0.234	0.435	1.199	1.102	5.852	2.314	0.138	0.138	0.165	0.336	0.643	1.555	0.348	0.189	0.276	0.284	2.901	2.318	0.510	nan	3.499	2.453	0.121	0.237	0.674	0.184	2.023	0.471	0.085	0.055	0.040	0.445
6692	chr6	28848321	28866587	+	0	NA	Intergenic	Intergenic	-6853	NR_104117	414760	Hs.211005	NR_104117	ENSG00000224157	HCG14	dJ111M5.4	HLA complex group 14 (non-protein coding)	ncRNA	2.198	1.529	nan	1.807	1.782	0.870	1.252	0.943	0.434	0.729	0.404	1.504	nan	1.634	0.154	1.687	2.088	0.789	nan	2.619	2.536	nan	1.712	3.458	3.615	1.796	1.954	2.328	3.488	2.870	2.485	1.060	1.379	2.330	2.453	2.549	3.128	1.594	0.993	0.870	1.162	0.280	0.717	1.252	1.504	0.198	0.757	0.715	0.825
251	chr1	40775235	40783764	+	0	NA	intron (NM_001852, intron 4 of 31)	intron (NM_001852, intron 4 of 31)	3440	NM_001852	1298	Hs.418012	NM_001852	ENSG00000049089	COL9A2	DJ39G22.4|EDM2|MED|STL5	collagen type IX alpha 2 chain	protein-coding	23.320	1.241	nan	2.855	1.284	0.829	2.088	0.778	0.075	0.737	0.394	3.255	3.612	0.217	0.077	1.615	2.067	0.929	1.083	4.116	2.776	1.914	0.458	1.737	1.814	0.655	nan	nan	2.645	1.086	0.833	1.759	nan	0.931	0.689	0.528	1.101	1.549	1.320	1.580	0.366	0.057	17.304	2.088	3.255	0.547	0.274	0.731	0.101
1594	chr11	95933247	95942335	+	0	NA	intron (NM_032427, intron 1 of 4)	intron (NM_032427, intron 1 of 4)	-136811	NR_036125	100422991		NR_036125	ENSG00000266192	MIR1260B	mir-1260b	microRNA 1260b	ncRNA	1.058	nan	0.750	0.116	0.418	0.247	0.395	0.539	0.105	0.139	0.146	0.026	0.304	0.401	0.156	0.713	0.579	0.552	nan	0.384	0.416	0.152	0.058	0.794	0.824	5.907	6.038	0.127	0.169	0.406	0.265	0.363	0.444	2.029	3.225	0.334	nan	0.383	0.410	0.128	0.099	0.716	0.349	0.395	0.026	0.193	0.033	0.086	0.221
369	chr1	72128922	72143910	+	0	NA	intron (NM_173808, intron 4 of 6)	L1MEg|LINE|L1	166279	NR_046218	100852409	Hs.681780	NR_046218	ENSG00000228853	NEGR1-IT1	-	NEGR1 intronic transcript 1	ncRNA	nan	0.767	0.933	0.211	0.478	0.219	0.153	0.060	0.084	1.120	0.653	3.316	0.588	0.029	0.132	0.325	0.226	0.225	0.291	0.765	nan	6.872	2.471	0.390	0.378	1.970	nan	0.455	0.488	0.418	0.164	0.219	0.198	1.042	0.782	0.430	0.920	1.043	0.754	0.108	0.349	0.265	0.048	0.153	3.316	0.007	0.075	0.059	0.139
4986	chr20	47892144	47900592	+	0	NA	promoter-TSS (NR_003695)	promoter-TSS (NR_003695)	-482	NR_003695	100113393	Hs.711216	NR_003695	ENSG00000222365	SNORD12B	-	small nucleolar RNA, C/D box 12B	snoRNA	nan	nan	2.918	3.866	3.261	1.528	3.119	2.847	0.366	1.722	0.778	3.488	8.084	4.051	0.107	8.524	7.344	3.741	5.272	5.119	4.599	6.477	2.837	7.094	7.351	3.093	4.429	5.751	6.327	nan	6.950	3.280	5.590	1.266	1.628	11.559	8.116	3.357	1.465	1.946	2.590	0.372	3.233	3.119	3.488	1.063	1.849	1.789	3.235
7861	chr8	106561006	106630543	+	0	NA	intron (NM_012082, intron 4 of 7)	intron (NM_012082, intron 4 of 7)	264627	NM_012082	23414	Hs.431009	NM_012082	ENSG00000169946	ZFPM2	DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2	zinc finger protein, FOG family member 2	protein-coding	0.941	nan	nan	0.103	0.296	0.152	0.081	0.151	0.090	0.056	0.058	0.076	0.438	0.128	0.074	0.316	0.235	0.204	0.227	0.347	0.425	nan	0.126	0.403	0.384	4.866	nan	1.161	nan	nan	1.082	0.190	0.268	0.055	0.071	0.444	nan	0.442	0.519	0.033	0.054	0.007	0.021	0.081	0.076	0.248	0.035	0.063	0.304
1548	chr11	79850199	79867555	+	0	NA	Intergenic	Intergenic	614969	NR_120570	101928944	Hs.547927	NR_120570	ENSG00000255178	LOC101928944	-	uncharacterized LOC101928944	ncRNA	nan	0.639	0.452	0.081	0.249	0.139	0.289	0.052	0.009	0.154	0.137	0.257	0.382	0.050	0.122	2.546	1.222	1.329	0.576	0.462	0.602	0.140	0.122	16.774	18.076	0.186	0.332	0.324	0.369	0.331	0.135	4.081	4.517	0.322	0.338	0.154	0.187	0.701	0.684	0.045	0.421	0.011	0.048	0.289	0.257	0.123	0.041	3.720	0.014
3900	chr18	74228387	74246700	+	0	NA	Intergenic	Intergenic	-3069	NR_015417	284276	Hs.390287	NR_015417	ENSG00000263812	LINC00908	-	long intergenic non-protein coding RNA 908	ncRNA	nan	nan	0.657	1.017	3.343	1.807	2.325	0.054	0.087	1.097	0.600	7.766	1.160	0.036	0.081	0.614	0.774	0.279	0.389	6.947	nan	5.913	3.366	0.538	0.582	0.078	0.135	4.369	nan	1.664	1.644	0.521	0.660	1.428	0.813	0.759	1.135	4.203	2.456	0.043	0.252	0.049	0.796	2.325	7.766	0.063	0.556	0.367	0.282
5634	chr3	165512991	165524852	+	0	NA	intron (NR_137635, intron 1 of 2)	intron (NR_137635, intron 1 of 2)	36339	NM_000055	590	Hs.420483	NM_000055	ENSG00000114200	BCHE	CHE1|CHE2|E1	butyrylcholinesterase	protein-coding	1.063	1.376	0.733	0.215	0.762	0.390	0.076	0.933	0.183	0.263	0.261	0.092	0.241	0.018	0.064	0.365	0.244	0.798	0.765	0.263	0.423	0.462	0.239	0.259	0.319	4.346	4.776	nan	0.495	nan	0.325	0.128	0.206	0.188	0.222	0.432	0.734	0.258	0.303	0.033	0.195	0.073	0.014	0.076	0.092	0.016	0.178	0.029	0.062
5434	chr3	97534293	97558647	+	0	NA	intron (NM_153605, intron 1 of 21)	intron (NM_153605, intron 1 of 21)	5586	NM_153605	131544	Hs.733378	NM_153605	ENSG00000080200	CRYBG3	DKFZp667G2110|vlAKAP	crystallin beta-gamma domain containing 3	protein-coding	1.558	1.085	1.768	0.320	0.625	0.291	0.316	0.323	0.092	0.842	0.496	0.840	0.632	0.227	0.101	0.358	0.216	0.440	0.610	2.611	2.214	0.764	0.238	0.585	0.557	1.914	2.509	0.963	1.246	8.045	7.652	0.135	0.282	1.172	1.352	1.570	2.198	1.228	0.693	0.199	0.903	0.410	0.428	0.316	0.840	0.690	1.351	0.076	1.686
4053	chr19	39337344	39348358	+	0	NA	intron (NM_001005335, intron 1 of 12)	CpG-13673	128	NM_001005335	3191	Hs.644906	NM_001533	ENSG00000104824	HNRNPL	HNRPL|P/OKcl.14|hnRNP-L	heterogeneous nuclear ribonucleoprotein L	protein-coding	5.076	3.485	4.431	7.325	4.370	2.301	3.388	2.670	0.382	2.437	1.253	3.238	13.298	8.119	0.229	2.953	3.067	4.086	6.304	4.095	4.134	6.607	2.857	10.798	11.080	3.012	4.043	4.986	6.709	nan	4.849	2.937	5.391	3.958	4.214	4.591	7.342	3.341	1.477	2.560	3.643	1.126	1.595	3.388	3.238	0.876	3.000	2.669	3.092
1823	chr12	10823500	10828340	+	0	NA	intron (NM_018423, intron 1 of 10)	AluSx1|SINE|Alu	971	NM_018423	55359	Hs.24979	NM_018423	ENSG00000060140	STYK1	NOK|SuRTK106	serine/threonine/tyrosine kinase 1	protein-coding	0.639	2.966	0.623	3.757	0.154	0.145	0.133	0.139	0.066	1.841	1.089	0.247	4.439	0.225	0.122	0.204	0.188	0.186	0.268	nan	1.632	14.146	4.247	9.422	9.837	0.201	0.249	3.526	5.702	0.411	0.172	0.705	1.206	0.206	0.155	0.335	0.738	1.628	0.882	0.653	0.700			0.133	0.247	0.060	0.673	0.287	0.205
5026	chr20	58882258	58903779	+	0	NA	intron (NR_046099, intron 3 of 4)	intron (NR_046099, intron 3 of 4)	9486	NR_030376	693231		NR_030376	ENSG00000207802	MIR646	MIRN646|hsa-mir-646	microRNA 646	ncRNA	0.708	0.764	0.384	0.061	0.302	0.113	0.129	0.076	0.030	0.073	0.050	0.068	0.286	0.086	0.088	3.301	nan	0.064	0.104	0.319	0.332	0.363	0.139	2.822	2.838	0.281	0.454	0.147	0.247	0.589	0.580	0.972	1.575	0.090	0.127	0.097	0.170	0.899	0.836	0.181	0.157	0.035	0.036	0.129	0.068	0.063	0.139	0.914	0.052
5999	chr4	116421958	116439239	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-395566	NM_022569	64579	Hs.591700	NM_022569	ENSG00000138653	NDST4	N-HSST|N-HSST 4|NDST-4|NHSST4	N-deacetylase and N-sulfotransferase 4	protein-coding	0.535	5.498	0.496	0.217	0.469	0.214	0.281	0.091	0.074	0.090	0.075	0.283	0.310	0.044	0.098	0.174	0.124	0.183	0.221	0.245	0.309	0.410	0.169	0.169	0.168	0.293	0.319	0.931	1.588	0.334	0.146	0.088	0.212	0.048	0.097	0.247	0.343	0.525	0.513	0.013	0.270	0.006	0.098	0.281	0.283		0.147	0.023	0.064
5975	chr4	100254595	100262138	+	0	NA	intron (NR_133005, intron 8 of 8)	MIRb|SINE|MIR	-15767	NM_001286650	125	Hs.4	NM_000668	ENSG00000196616	ADH1B	ADH2|HEL-S-117	alcohol dehydrogenase 1B (class I), beta polypeptide	protein-coding	0.496	nan	nan	0.093	0.131	0.106	0.017	0.088	0.171	0.020	0.066	0.064	0.155	0.044	0.066	0.764	0.199	6.604	nan	0.152	0.167	0.026	0.016	6.409	6.147	0.151	nan	0.142	0.200	0.368	0.155	0.169	0.202	0.078	0.045	0.165	nan	0.115	0.166	0.022	0.059	0.038	0.053	0.017	0.064		0.014	0.066	0.017
6613	chr6	10554943	10560608	+	0	NA	intron (NM_001491, intron 1 of 2)	AluJr|SINE|Alu	1826	NM_001491	2651	Hs.519884	NM_001491	ENSG00000111846	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)	protein-coding	2.421	nan	1.398	3.671	1.708	1.132	3.405	0.136	0.105	1.439	1.204	7.409	3.182	0.213	0.122	6.652	9.375	5.209	7.285	8.131	7.212	7.931	2.352	2.547	2.888	4.677	5.133	2.341	3.046	2.467	2.337	3.044	6.380	4.833	4.265	0.828	0.987	3.351	1.967	0.845	1.807	0.803	0.367	3.405	7.409	0.342	1.185	3.291	0.558
5520	chr3	126255832	126276286	+	0	NA	intron (NR_130715, intron 4 of 5)	intron (NR_130715, intron 4 of 5)	11749	NM_152533	152065	Hs.178210	NM_152533	ENSG00000180697	C3orf22	-	chromosome 3 open reading frame 22	protein-coding	1.328	nan	1.956	0.914	0.329	0.180	0.175	0.121	0.095	0.581	0.162	0.117	0.587	0.043	0.065	0.357	0.357	0.166	0.268	0.599	0.612	5.267	1.085	0.354	0.348	0.247	nan	0.434	0.654	2.452	2.176	0.355	0.352	0.960	1.346	0.341	0.402	2.216	1.249	0.215	0.148	0.111	0.299	0.175	0.117	0.729	0.049	0.034	0.061
8051	chr9	13159651	13170218	+	0	NA	intron (NM_001330637, intron 22 of 46)	intron (NM_001330637, intron 22 of 46)	114629	NM_001261406	8777	Hs.169378	NM_003829	ENSG00000107186	MPDZ	HYC2|MUPP1	multiple PDZ domain crumbs cell polarity complex component	protein-coding	nan	nan	0.943	0.210	0.765	0.367	1.286	0.133	0.106	0.726	0.649	3.222	0.538	0.093	0.110	0.142	0.203	0.233	0.312	2.117	1.974	9.455	3.842	0.130	0.162	1.659	2.089	0.704	0.749	0.363	0.266	0.217	0.217	4.455	3.232	0.222	0.413	6.595	2.817	1.686	0.316	0.532	0.309	1.286	3.222	0.138	0.578	0.038	0.072
1496	chr11	70137673	70167895	+	0	NA	intron (NM_003626, intron 2 of 27)	intron (NM_003626, intron 2 of 27)	22723	NR_031624	100313770		NR_031624	ENSG00000221333	MIR548K	MIRN548K	microRNA 548k	ncRNA	nan	0.732	0.544	0.226	0.352	0.170	0.211	0.169	0.107	0.264	0.183	0.194	0.390	0.131	0.101	0.609	0.618	0.509	0.571	0.529	0.649	6.181	3.422	1.002	1.143	0.424	0.694	0.944	1.008	0.468	0.353	0.435	0.540	0.445	0.562	0.226	0.536	1.152	0.763	0.143	0.315	0.078	0.081	0.211	0.194	0.045	0.047	0.175	0.111
1108	chr10	42596540	42601681	+	0	NA	Intergenic	HSATII|Satellite|Satellite	264383	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo	35.865	nan	34.136	23.132	51.436	39.620	41.369	33.118	110.074	38.832	52.791	19.016	61.239	23.190	39.909	31.505	17.412	14.913	16.094	26.762	32.546	15.537	17.885	17.345	16.269	27.329	28.324	25.535	23.524	31.941	14.217	22.433	31.608	14.207	21.232	27.532	29.808	8.182	11.390	12.922	26.928	19.819	13.270	41.369	19.016	7.144	12.671	26.187	31.565
2282	chr13	40731868	40757601	+	0	NA	Intergenic	Intergenic	-11212	NR_046870	100874127	Hs.578028	NR_046870	ENSG00000230710	LINC00332	NCRNA00332	long intergenic non-protein coding RNA 332	ncRNA	1.133	0.834	0.905	0.083	0.158	0.118	0.122	0.150	0.094	0.049	0.054	0.223	0.415	0.051	0.072	0.548	0.431	0.157	0.188	0.354	0.417	0.618	0.147	0.107	0.135	2.994	3.169	0.141	0.162	1.746	1.612	0.235	0.222	0.044	0.059	1.205	2.887	0.148	0.242	0.171	0.083	0.011	0.061	0.122	0.223	0.305	0.039	0.062	0.698
1014	chr10	10829171	10848021	+	0	NA	promoter-TSS (NM_001326325)	promoter-TSS (NM_001326325)	-183	NM_001326325	10659	Hs.309288	NM_006561	ENSG00000048740	CELF2	BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR	CUGBP, Elav-like family member 2	protein-coding	nan	0.588	0.483	0.070	0.166	0.173	0.245	1.467	0.162	0.049	0.095	0.032	0.302	5.336	0.183	0.543	0.580	1.304	1.326	0.244	0.382	0.227	0.108	0.229	0.255	0.441	0.783	0.104	0.105	0.234	0.112	0.118	0.236	0.037	0.032	0.194	0.303	0.102	0.158	0.003	0.052	0.015	0.116	0.245	0.032	0.005	0.021	0.057	0.032
2760	chr14	100007614	100046718	+	0	NA	intron (NM_001144995, intron 1 of 5)	intron (NM_001144995, intron 1 of 5)	43561	NM_001144995	317762	Hs.709288	NM_001144995	ENSG00000205476	CCDC85C	-	coiled-coil domain containing 85C	protein-coding	1.489	1.561	3.407	1.344	0.349	0.172	1.318	0.604	0.211	0.873	0.597	0.444	3.256	0.432	0.100	0.629	1.217	0.369	0.998	2.309	1.807	1.460	0.338	0.356	0.364	1.154	1.866	2.819	3.541	1.359	1.612	0.609	0.632	1.260	1.255	0.633	1.904	1.709	1.081	4.824	0.743	0.413	0.299	1.318	0.444	0.220	0.265	0.107	0.437
843	chr1	211498345	211511492	+	0	NA	intron (NM_001033910, intron 1 of 10)	intron (NM_001033910, intron 1 of 10)	4770	NM_001033910	7188	Hs.523930	NM_004619	ENSG00000082512	TRAF5	MGC:39780|RNF84	TNF receptor associated factor 5	protein-coding	2.733	2.144	3.702	0.335	0.930	0.388	1.666	0.872	0.159	0.898	0.415	1.056	nan	0.580	0.084	0.522	0.686	3.226	4.113	1.336	1.232	nan	2.075	1.652	1.642	0.697	nan	1.795	1.797	0.599	0.503	0.943	1.620	2.197	1.989	1.124	2.824	1.437	1.193	0.063	0.041	0.320	0.367	1.666	1.056	0.223	0.602	1.121	0.671
2529	chr14	30728003	30744788	+	0	NA	Intergenic	Intergenic	-291934	NM_001308097	55632	Hs.509008	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding	1.333	0.968	0.811	0.332	8.938	4.490	0.971	0.502	0.251	0.645	0.371	1.030	0.459	0.013	0.151	0.278	0.269	0.292	0.216	1.226	1.273	3.266	1.629	0.305	0.291	2.109	2.213	0.408	0.483	0.963	0.578	0.108	0.233	7.061	7.771	0.255	0.527	1.084	0.615	0.151	0.186	1.788	0.334	0.971	1.030	0.036	0.157	0.042	0.051
6499	chr5	147214923	147222942	+	0	NA	promoter-TSS (NM_003122)	promoter-TSS (NM_003122)	-138	NM_003122	6690	Hs.407856	NM_003122	ENSG00000164266	SPINK1	PCTT|PSTI|Spink3|TATI|TCP	serine peptidase inhibitor, Kazal type 1	protein-coding	nan	0.835	0.599	0.044	0.286	0.215	0.080	0.111	0.120	0.039	0.063	0.135	0.326	0.103	0.058	0.204	0.108	7.583	5.202	0.212	0.242	0.372	0.118	0.109	0.179	0.178	0.383	0.398	0.445	0.430	0.232	0.238	0.354	0.134	0.314	0.209	0.421	0.195	0.321	0.014	0.088	0.004	0.049	0.080	0.135	0.036	0.089	0.161	0.045
7846	chr8	103086808	103099742	+	0	NA	intron (NM_001040624, intron 1 of 7)	MER5A|DNA|hAT-Charlie	43287	NM_001040624	83988	Hs.492427	NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding	1.124	nan	nan	4.818	10.867	5.878	0.733	0.097	0.087	0.894	0.479	3.010	1.094	0.033	0.065	0.272	0.228	0.169	0.236	2.057	2.429	7.095	4.022	0.329	0.385	0.286	nan	5.671	nan	nan	0.131	0.154	0.237	3.913	3.455	0.147	nan	2.447	1.109	0.050	0.258	1.132	0.117	0.733	3.010	0.023	0.110	0.053	0.019
2315	chr13	53310621	53338450	+	0	NA	Intergenic	Intergenic	-10588	NM_001011705	11061	Hs.421391	NM_007015	ENSG00000136110	CNMD	BRICD3|CHM-I|CHM1|LECT1|MYETS1	chondromodulin	protein-coding	0.902	nan	nan	0.095	0.225	0.057	0.161	0.062	0.058	0.271	0.162	0.320	0.706	0.039	0.078	0.950	0.502	0.459	0.441	0.562	0.701	6.213	1.777	0.115	0.145	0.545	0.987	0.666	0.652	1.061	0.997	0.482	0.689	1.156	0.928	1.019	nan	0.703	0.390	1.190	0.517	0.206	0.125	0.161	0.320	0.123	0.175	0.183	0.483
4677	chr2	205407152	205420168	+	0	NA	intron (NM_205863, intron 1 of 21)	intron (NM_205863, intron 1 of 21)	3144	NM_057177	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	1.199	nan	1.919	0.498	1.219	0.654	0.500	0.526	0.107	0.355	0.140	0.913	1.878	0.091	0.094	0.852	0.652	1.488	2.299	1.316	1.135	0.842	0.300	17.814	18.140	0.611	0.826	1.216	1.674	0.401	0.234	0.356	0.506	0.255	0.164	0.204	0.269	0.609	0.466	0.621	0.232	0.112	1.348	0.500	0.913	0.142	0.047	0.061	0.057
610	chr1	160211182	160233413	+	0	NA	intron (NR_028104, intron 1 of 12)	L2c|LINE|L2	9980	NR_028106	50717	Hs.632447	NM_015726	ENSG00000132716	DCAF8	GAN2|H326|WDR42A	DDB1 and CUL4 associated factor 8	protein-coding	2.203	nan	5.539	1.084	0.885	0.448	1.279	1.678	0.276	0.632	0.431	1.227	1.787	0.781	0.167	1.472	1.433	1.689	2.635	2.148	nan	1.549	0.768	2.144	2.159	2.064	2.472	1.546	nan	2.406	1.795	2.138	3.054	1.233	1.750	2.263	4.590	1.216	0.689	0.436	1.262	0.236	0.670	1.279	1.227	0.440	0.483	0.838	1.053
514	chr1	148927715	148932825	+	0	NA	promoter-TSS (NR_027354)	promoter-TSS (NR_027354)	-135	NR_027354	645166	Hs.744183	NR_027354		LOC645166	-	lymphocyte-specific protein 1 pseudogene	pseudo	1.912	nan	5.929	0.498	1.076	0.565	1.068	0.367	0.280	4.385	1.693	1.464	7.073	2.584	0.260	1.279	2.248	0.586	1.129	1.925	1.995	1.821	0.722	0.693	0.615	1.351	2.465	1.488	2.282	1.210	1.014	3.725	5.497	0.860	0.853	1.063	1.561	6.027	3.617	1.108	0.506	0.092	0.248	1.068	1.464	1.728	6.885	1.523	0.435
6426	chr5	122774391	122798667	+	0	NA	Intergenic	Intergenic	-27243	NM_153223	153241	Hs.483209	NM_153223	ENSG00000168944	CEP120	CCDC100|SRTD13	centrosomal protein 120	protein-coding	nan	0.977	1.041	0.358	0.540	0.298	0.118	0.102	0.064	0.123	0.146	0.251	0.872	0.076	0.124	0.264	0.271	0.238	nan	0.591	0.856	0.011	0.010	0.403	0.392	1.534	1.670	0.368	0.426	3.146	2.426	0.148	0.228	2.673	2.534	1.961	4.755	0.557	0.483	0.232	0.095	0.716	0.183	0.118	0.251	0.266	0.084	0.053	1.424
1994	chr12	64328267	64337350	+	0	NA	intron (NM_020762, intron 1 of 21)	AluJo|SINE|Alu	94275	NM_020762	57522	Hs.210751	NM_020762	ENSG00000196935	SRGAP1	ARHGAP13|NMTC2	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.956	0.773	0.899	0.322	1.040	0.567	0.421	0.247	0.054	0.964	0.676	0.369	1.025	0.284	0.095	4.334	3.250	1.816	3.052	0.420	nan	2.216	0.611	0.621	0.714	4.151	4.399	0.846	0.699	6.275	6.260	0.683	0.945	2.522	3.057	0.378	0.769	2.203	1.390	0.085	0.224	0.518	3.712	0.421	0.369	0.235	0.552	0.489	0.432
7336	chr7	76234723	76259104	+	0	NA	intron (NM_012230, intron 4 of 6)	intron (NM_012230, intron 4 of 6)	9707	NM_152992	22932	Hs.488877	NM_012230	ENSG00000146707	POMZP3	POM-ZP3|POM121	POM121 and ZP3 fusion	protein-coding	nan	1.050	1.698	0.795	0.703	0.389	0.910	1.231	0.473	0.613	0.364	0.790	1.060	0.689	0.183	1.173	1.413	1.327	nan	1.967	2.098	5.140	1.436	1.344	1.210	0.473	nan	1.015	nan	1.195	1.083	0.998	1.719	1.901	2.439	1.467	1.687	2.937	1.476	0.465	0.758	0.735	0.859	0.910	0.790	0.529	0.307	0.317	0.164
6083	chr4	176682837	176714280	+	0	NA	intron (NM_201592, intron 1 of 6)	intron (NM_201592, intron 1 of 6)	10269	NM_001261448	2823	Hs.75819	NM_005277	ENSG00000150625	GPM6A	GPM6|M6A	glycoprotein M6A	protein-coding	nan	nan	0.583	0.223	0.208	0.128	0.053	0.079	0.102	1.283	0.843	0.077	0.437	0.045	0.075	0.287	0.192	2.929	nan	0.179	0.222	0.100	0.048	0.215	0.243	3.748	3.861	0.305	0.409	1.256	0.997	0.204	0.321	0.654	0.619	0.248	0.421	0.601	0.441	0.012	0.066	0.064	0.028	0.053	0.077		0.135	0.126	0.032
3907	chr18	74839289	74846827	+	0	NA	intron (NM_001025100, intron 1 of 3)	(CA)n|Simple_repeat|Simple_repeat	1716	NM_001025100	4155	Hs.551713	NM_002385	ENSG00000197971	MBP	-	myelin basic protein	protein-coding	nan	nan	6.911	1.588	1.714	1.025	1.743	3.243	0.206	1.163	0.616	4.773	4.827	0.043	0.060	4.158	5.267	4.480	8.089	5.645	nan	8.838	3.222	4.826	5.032	0.299	0.423	5.808	nan	0.779	0.944	1.783	3.394	1.796	1.529	0.080	0.073	1.536	0.891	0.435	1.788	0.088	0.807	1.743	4.773	0.223	3.161	0.552	0.017
3857	chr18	59014856	59040209	+	0	NA	intron (NM_031891, intron 1 of 11)	intron (NM_031891, intron 1 of 11)	26717	NM_031891	28316	Hs.671510	NM_031891	ENSG00000101542	CDH20	CDH7L3|Cdh7	cadherin 20	protein-coding	nan	0.897	0.931	0.106	0.243	0.139	1.064	0.076	0.083	0.149	0.152	0.057	0.305	0.038	0.087	0.313	0.174	0.187	0.280	0.395	0.449	1.242	0.545	0.392	0.399	0.132	0.200	0.375	0.386	0.816	0.473	0.128	0.183	2.662	3.488	1.379	3.207	nan	1.265	0.022	0.077	0.722	0.131	1.064	0.057	0.019	0.017	0.012	1.057
8416	chrX	149999749	150027765	+	0	NA	intron (NM_134445, intron 1 of 7)	L1MB5|LINE|L1	53532	NM_001184808	83692	Hs.522805	NM_031462	ENSG00000102181	CD99L2	CD99B|MIC2L1	CD99 molecule like 2	protein-coding	nan	0.998	1.435	1.203	1.204	0.584	0.183	0.075	0.056	0.124	0.162	0.753	0.551	0.031	0.049	0.229	0.165	0.173	0.327	1.469	1.306	1.017	0.167	0.308	0.285	0.216	0.368	7.031	6.946	0.655	0.591	0.088	0.163	0.964	1.302	0.176	0.289	1.454	0.776	0.160	0.776	0.218	0.118	0.183	0.753	0.049	2.123	0.039	0.180
1136	chr10	72473409	72479539	+	0	NA	intron (NM_080722, intron 4 of 21)	intron (NM_080722, intron 4 of 21)	44212	NM_080722	140766	Hs.352156	NM_080722	ENSG00000138316	ADAMTS14	-	ADAM metallopeptidase with thrombospondin type 1 motif 14	protein-coding	0.845	nan	3.520	1.524	4.133	1.663	0.272	0.049	0.053	1.046	0.446	7.744	1.640	0.029	0.033	3.502	4.571	0.165	0.318	5.979	7.817	6.793	3.010	0.379	0.225	0.394	0.613	0.441	nan	0.413	0.112	0.402	0.534	1.017	1.304	0.519	nan	1.987	0.948	1.519	0.261	0.216	0.310	0.272	7.744	0.079	0.099	0.033	0.222
1175	chr10	88087936	88102341	+	0	NA	intron (NM_017551, intron 2 of 15)	MER103C|DNA|hAT-Charlie	31112	NM_017551	2894	Hs.530653	NM_017551	ENSG00000182771	GRID1	GluD1	glutamate ionotropic receptor delta type subunit 1	protein-coding	0.628	0.612	0.597	0.015	6.057	3.128	0.223	0.047	0.090	0.454	0.259	0.706	0.981	0.023	0.055	0.376	0.343	0.191	0.280	0.608	0.550	2.891	1.230	0.078	0.104	0.244	0.309	0.345	0.756	0.261	0.162	0.186	0.187	1.647	1.582	0.210	0.350	2.121	1.001	0.514	0.518	0.852	0.059	0.223	0.706	0.074	0.028	0.027	0.079
1683	chr11	117683828	117709921	+	0	NA	intron (NM_001204268, intron 6 of 10)	intron (NM_001204268, intron 6 of 10)	-1415	NM_001680	486	Hs.731865	NM_001680	ENSG00000137731	FXYD2	ATP1G1|HOMG2	FXYD domain containing ion transport regulator 2	protein-coding	0.901	2.084	0.742	0.938	0.556	0.239	0.950	0.057	0.013	0.778	0.431	1.345	3.059	0.087	0.081	0.883	nan	0.287	0.667	1.470	1.640	3.137	0.802	0.654	0.625	0.646	nan	3.654	3.359	0.646	0.581	1.433	2.058	1.916	1.886	0.623	1.774	1.942	1.100	3.999	1.205	0.446	0.247	0.950	1.345	0.258	0.782	0.605	0.500
1382	chr11	34699383	34708255	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	49808	NM_001206616	26298	Hs.653859	NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding	0.547	2.036	nan	0.418	0.380	0.181	0.332	0.344	0.127	0.263	0.159	0.643	0.825	0.037	0.114	0.549	0.629	1.334	4.767	0.423	0.438	10.733	4.748	0.317	0.280	0.246	0.421	0.440	0.487	0.276	0.122	0.136	0.255	0.384	0.835	0.145	nan	0.456	0.296	0.287	0.101	0.054	0.081	0.332	0.643	0.065	0.103	0.022	0.096
1452	chr11	62596972	62611774	+	0	NA	intron (NM_018093, intron 4 of 11)	AluSx|SINE|Alu	2758	NM_001307977	54663	Hs.654620	NM_018093	ENSG00000133316	WDR74	-	WD repeat domain 74	protein-coding	nan	3.021	1.959	5.028	3.147	1.722	2.190	2.062	0.452	1.416	0.981	2.461	8.462	3.915	0.189	6.823	7.078	3.582	6.084	7.351	6.593	6.644	4.300	9.943	10.629	3.144	4.254	5.923	8.220	6.412	6.774	4.109	6.004	4.809	5.322	4.014	5.368	3.470	1.829	3.264	4.042	0.715	2.069	2.190	2.461	1.013	1.795	1.922	1.722
2384	chr13	97764920	97779987	+	0	NA	Intergenic	Intergenic	59423	NR_125725	103625683	Hs.679591	NR_125725	ENSG00000233124	LINC00456	-	long intergenic non-protein coding RNA 456	ncRNA	1.197	1.894	1.015	0.473	0.633	0.329	4.306	2.639	0.427	0.105	0.138	0.645	1.787	0.111	0.068	0.563	0.411	0.720	2.826	0.621	0.756	0.415	0.219	0.122	0.171	0.150	0.344	0.654	1.217	0.895	0.575	0.313	0.506	0.723	0.981	0.972	2.273	0.292	0.282	0.119	0.353	0.145	0.249	4.306	0.645	0.335	1.972	0.167	0.546
5771	chr3	190651516	190661400	+	0	NA	Intergenic	L1MD2|LINE|L1	60739	NR_024343	100170222	Hs.717310	NR_024343		SNAR-I	snaR-3	small ILF3/NF90-associated RNA I	snRNA	3.224	1.149	0.990	0.213	0.302	0.113	0.079	0.122	0.116	0.096	0.158	0.048	nan	0.131	0.111	1.033	1.465	1.359	0.386	0.213	0.378	0.580	0.197	0.472	0.327	0.211	0.327	0.377	0.509	14.369	13.542	0.666	1.055	0.301	0.337	0.973	2.339	0.238	0.349	0.028	0.117	0.223	0.024	0.079	0.048	0.020	0.051	0.459	0.688
1337	chr11	19884935	19903171	+	0	NA	intron (NM_182964, intron 4 of 37)	intron (NM_182964, intron 4 of 37)	-112424	NR_039843	100616426		NR_039843	ENSG00000264309	MIR4694	-	microRNA 4694	ncRNA	0.807	nan	4.215	2.780	0.587	0.238	0.407	0.576	0.086	1.479	0.892	0.446	7.634	0.030	0.066	nan	1.808	0.582	0.583	3.549	3.209	4.984	1.272	0.386	0.364	1.433	nan	1.505	2.203	1.147	1.251	0.698	1.706	1.059	0.496	0.084	0.159	2.868	nan	3.816	1.927	0.309	0.534	0.407	0.446	0.198	0.044	1.144	0.027
6524	chr5	156333193	156352984	+	0	NA	Intergenic	Intergenic	47178	NM_138379	91937	Hs.334907	NM_138379	ENSG00000145850	TIMD4	SMUCKLER|TIM4	T-cell immunoglobulin and mucin domain containing 4	protein-coding	0.794	nan	0.650	0.596	2.975	1.500	0.173	0.069	0.114	0.135	0.163	3.366	0.639	0.066	0.115	1.060	0.979	0.573	0.341	0.628	0.711	0.146	0.061	0.070	0.053	0.138	0.166	0.808	0.941	0.529	0.378	0.184	0.283	0.533	0.696	0.322	0.542	1.290	0.771	0.174	0.072	0.104	0.116	0.173	3.366	0.053	0.056	0.025	0.162
3101	chr16	29603925	29628136	+	0	NA	intron (NR_135317, intron 1 of 11)	MER4D|LTR|ERV1	-5444	NR_049833	100847041		NR_049833	ENSG00000266758	MIR3680-2	-	microRNA 3680-2	ncRNA	2.211	1.373	nan	1.879	1.517	0.780	1.479	0.726	0.220	0.673	0.390	1.517	4.177	2.456	0.130	1.459	2.137	1.797	2.988	1.616	1.488	nan	0.876	3.413	3.321	1.237	1.928	4.074	6.454	2.615	3.035	1.191	2.240	1.783	1.916	1.841	2.557	1.200	0.855	1.571	0.893	0.873	1.179	1.479	1.517	0.907	2.056	1.326	0.864
2098	chr12	98356663	98380812	+	0	NA	Intergenic	MIRc|SINE|MIR	20489	NR_036189	100422924		NR_036189	ENSG00000263890	MIR4303	-	microRNA 4303	ncRNA	0.864	0.711	1.129	0.240	0.394	0.153	0.132	0.137	0.176	1.092	0.944	0.198	nan	0.049	0.110	0.282	0.173	0.339	0.327	0.510	0.658	1.492	0.332	0.335	0.366	0.835	nan	0.675	nan	0.414	0.212	0.134	0.192	1.603	1.201	0.170	0.210	4.820	2.092	0.166	0.287	0.367	0.046	0.132	0.198	0.008	0.198	0.044	0.051
3837	chr18	55580561	55598950	+	0	NA	Intergenic	Intergenic	-119428	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding	nan	1.067	1.899	0.492	0.910	0.544	0.560	0.098	0.080	0.239	0.239	1.808	0.822	0.041	0.068	1.611	2.104	0.575	0.601	2.088	2.622	6.546	1.612	3.415	3.765	1.427	1.395	2.298	2.612	2.069	2.609	0.501	1.017	3.583	4.107	0.772	2.642	nan	2.031	0.826	0.900	0.982	0.700	0.560	1.808	0.580	0.686	1.197	0.777
6215	chr5	27471043	27475875	+	0	NA	intron (NR_038848, intron 1 of 4)	MER61-int|LTR|ERV1	1060	NR_038848	643401	Hs.533212	NR_038848	ENSG00000250337	LINC01021	-	long intergenic non-protein coding RNA 1021	ncRNA	0.752	1.198	1.150	0.300	0.166	0.099	0.160	0.217	0.092	2.467	1.894	0.123	0.470	0.022	0.085	0.297	0.155	0.221	0.368	0.472	0.488	0.212	0.100	0.130	0.104	nan	10.215	0.251	0.244	0.622	0.402	0.113	0.125	0.061	0.158	0.703	1.095	nan	0.636	0.034	0.037			0.160	0.123	0.039	0.085	0.020	0.128
3018	chr16	1458243	1478720	+	0	NA	Intergenic	AluSz|SINE|Alu	2320	NM_001272051	283951	Hs.58373	NM_001010878	ENSG00000174109	C16orf91	CCSMST1|URLC5|gs103	chromosome 16 open reading frame 91	protein-coding	1.913	nan	1.436	2.011	1.553	0.839	1.688	0.515	0.141	0.755	0.401	1.535	2.878	1.378	0.117	1.767	1.438	0.834	1.460	1.234	1.243	nan	1.180	2.564	2.641	0.884	nan	1.924	2.053	1.336	1.340	1.230	1.249	1.175	1.369	1.017	1.216	1.242	0.737	1.212	2.410	0.167	0.605	1.688	1.535	0.421	0.546	0.408	0.411
2604	chr14	56796928	56809732	+	0	NA	Intergenic	Intergenic	-177719	NR_135241	101927690	Hs.385477	NR_135241	ENSG00000258803	LOC101927690	-	uncharacterized LOC101927690	ncRNA	3.226	nan	2.498	2.055	0.749	0.303	0.709	0.611	0.101	0.281	0.230	1.382	0.510	0.059	0.121	0.510	0.600	1.024	1.045	1.618	1.342	1.758	0.314	1.583	1.710	0.186	0.409	4.798	4.768	1.800	1.391	0.616	0.639	0.425	1.281	1.614	4.320	nan	0.992	0.157	0.270	0.081	0.130	0.709	1.382	0.197	4.157	0.148	1.370
4974	chr20	46409121	46429843	+	0	NA	Intergenic	MIRb|SINE|MIR	-4122	NM_198596	55959	Hs.162016	NM_018837	ENSG00000196562	SULF2	HSULF-2	sulfatase 2	protein-coding	nan	nan	0.645	0.084	0.229	0.137	0.891	1.087	0.434	0.090	0.103	0.751	7.624	0.116	0.103	0.441	0.448	0.558	1.345	2.333	2.559	nan	0.117	0.205	0.194	1.083	1.648	0.133	0.170	nan	0.899	0.376	0.443	0.674	0.859	0.295	0.501	0.251	0.251	0.778	0.279	0.273	0.236	0.891	0.751	0.849	0.162	0.062	0.091
7171	chr7	14530061	14536245	+	0	NA	intron (NM_145695, intron 19 of 23)	Tigger7|DNA|TcMar-Tigger	347922	NM_145695	1607	Hs.567255	NM_004080	ENSG00000136267	DGKB	DAGK2|DGK|DGK-BETA	diacylglycerol kinase beta	protein-coding	nan	0.896	nan	0.071	0.229	0.077	0.123	0.096		0.245	0.176	0.136	0.280	0.053	0.124	nan	0.317	8.225	1.981	0.421	0.558	0.284	0.096	1.208	1.204	1.145	1.146	0.350	0.327	0.208	0.079	0.077	0.148	0.116	0.107	0.229	0.379	0.421	0.317	0.116	0.042		0.091	0.123	0.136	0.031	0.010	0.032	0.117
6690	chr6	27829433	27849773	+	0	NA	TTS (NM_003533)	TTS (NM_003533)	496	NM_003533	8354	Hs.132854	NM_003533	ENSG00000275379	HIST1H3I	H3.f|H3/f|H3FF	histone cluster 1 H3 family member i	protein-coding	2.716	1.499	nan	3.281	3.078	1.568	0.213	0.645	0.293	0.186	0.163	3.695	nan	6.709	0.234	5.681	6.502	4.700	nan	5.922	3.631	11.721	4.975	1.319	1.307	0.332	0.508	2.679	3.252	0.779	0.793	0.993	2.360	1.505	1.266	2.478	2.022	2.084	1.094	0.701	2.948	0.175	0.542	0.213	3.695	0.215	1.715	0.886	0.912
8357	chrUn_gl000218	19197	31181	+	0	NA	Intergenic	Intergenic	29860	NR_027420	389834	Hs.720653	NR_027420		LOC389834	-	ankyrin repeat domain 57 pseudogene	pseudo	nan	0.808	nan	0.170	0.327	0.173	0.194	0.139	0.147	0.093	0.206	0.120	0.466	0.054	0.088	0.457	0.312	0.226	0.316	0.196	0.274	0.166	0.096	0.354	0.348	0.208	nan	0.154	0.176	0.839	0.245	0.239	0.290	0.887	0.995	0.201	0.263	nan	nan	0.023	0.082	0.339	0.067	0.194	0.120	0.016	0.429	0.018	0.052
5651	chr3	170180598	170193163	+	0	NA	intron (NR_135557, intron 1 of 2)	intron (NR_135557, intron 1 of 2)	1807	NR_135556	101928583	Hs.407600	NR_135555	ENSG00000013297	LOC101928583	-	uncharacterized LOC101928583	ncRNA	3.012	1.365	3.453	1.564	1.597	1.085	1.442	2.387	0.386	0.249	0.523	1.406	0.917	0.034	0.075	0.700	0.948	0.576	1.081	6.153	4.977	0.305	0.165	0.307	0.258	3.115	3.514	2.913	3.651	3.572	3.929	4.529	6.403	5.977	5.749	1.297	2.084	1.548	0.982	0.262	2.319	2.776	1.026	1.442	1.406	1.509	0.106	9.740	0.964
332	chr1	60431648	60453359	+	0	NA	Intergenic	Intergenic	-50033	NM_000775	1573	Hs.152096	NM_000775	ENSG00000134716	CYP2J2	CPJ2|CYPIIJ2	cytochrome P450 family 2 subfamily J member 2	protein-coding	1.864	0.749	nan	0.273	0.482	0.289	0.174	0.146	0.089	0.471	0.238	0.316	0.774	0.076	0.084	0.317	0.279	0.303	0.464	0.973	1.116	3.489	1.224	0.304	0.295	nan	nan	1.114	nan	1.273	1.569	0.277	0.346	0.608	0.309	0.386	0.661	3.100	1.803	0.414	0.123	0.097	0.135	0.174	0.316	0.444	0.985	0.055	0.436
1965	chr12	55443508	55466869	+	0	NA	Intergenic	Intergenic	41459	NM_021191	58158	Hs.591024	NM_021191	ENSG00000123307	NEUROD4	ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4	neuronal differentiation 4	protein-coding	nan	1.065	1.679	0.053	0.618	0.398	0.808	0.109	0.118	0.114	0.102	0.220	0.507	0.037	0.086	nan	0.889	0.218	0.243	0.269	nan	0.242	0.147	0.154	0.193	5.508	6.073	0.453	nan	3.043	2.858	0.132	0.205	5.077	6.931	1.321	3.168	0.752	0.639	0.009	0.175	2.120	1.606	0.808	0.220	1.745	0.109	0.030	0.703
745	chr1	190418048	190449870	+	0	NA	intron (NM_199051, intron 1 of 7)	intron (NM_199051, intron 1 of 7)	11181	NM_001317188	339479	Hs.65765	NM_199051	ENSG00000162670	BRINP3	DBCCR1L|DBCCR1L1|FAM5C	BMP/retinoic acid inducible neural specific 3	protein-coding	0.797	nan	0.823	0.132	0.170	0.121	0.225	0.119	0.091	0.178	0.206	0.083	1.239	0.082	0.104	0.638	0.445	2.800	3.335	0.466	0.558	0.639	0.215	2.173	2.324	0.874	nan	0.434	0.475	0.754	0.456	0.095	0.177	0.291	0.250	0.459	0.777	0.340	0.356	0.056	0.097	0.072	0.075	0.225	0.083	0.080	0.189	0.044	0.039
3691	chr18	22928889	22932723	+	0	NA	intron (NM_001308225, intron 1 of 6)	CpG	1408	NM_015461	25925	Hs.116935	NM_015461	ENSG00000198795	ZNF521	EHZF|Evi3	zinc finger protein 521	protein-coding	5.655	0.809	3.337	0.396	0.497	0.375	13.185	3.743	0.367	0.699	0.562	0.435	8.482	0.283	0.045	0.749	1.134	0.403	nan	13.269	9.794	1.069	0.374	1.011	1.271	2.207	3.050	1.185	2.299	3.333	5.410	0.537	1.323	3.778	2.004	0.915	1.266	3.439	2.615	4.595	4.119	0.866	0.021	13.185	0.435	1.503	0.426	0.102	2.747
7779	chr8	89122302	89131259	+	0	NA	intron (NM_005941, intron 6 of 9)	intron (NM_005941, intron 6 of 9)	212937	NM_005941	4325	Hs.492187	NM_005941	ENSG00000156103	MMP16	C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP	matrix metallopeptidase 16	protein-coding	1.210	nan	nan	0.235	0.357	0.204	0.216	0.383	0.036	0.034	0.074	0.146	0.383	0.061	0.063	0.509	0.366	6.213	4.367	0.306	0.532	0.251	0.196	1.348	1.513	0.785	0.922	nan	0.464	0.462	0.193	0.178	0.414	0.116	0.164	0.376	0.539	0.337	0.428	0.080	0.117	0.042	0.036	0.216	0.146		0.075	0.033	0.298
3650	chr18	5508880	5530919	+	0	NA	intron (NM_001330557, intron 1 of 21)	intron (NM_001330557, intron 1 of 21)	20656	NM_001281533	23136	Hs.213394	NM_012307	ENSG00000082397	EPB41L3	4.1B|DAL-1|DAL1	erythrocyte membrane protein band 4.1 like 3	protein-coding	1.340	0.959	1.332	0.071	0.653	0.335	0.153	0.092	0.073	0.316	0.150	0.038	nan	0.044	0.107	0.454	0.327	0.337	0.611	2.928	2.521	nan	0.158	0.098	0.130	0.157	nan	0.651	0.713	nan	5.370	0.219	0.291	2.979	3.667	1.018	nan	nan	0.561	0.192	0.474	0.730	0.274	0.153	0.038	1.058	0.033	0.089	0.881
5673	chr3	173604746	173623203	+	0	NA	intron (NM_014932, intron 4 of 6)	intron (NM_014932, intron 4 of 6)	24612	NR_046664	100874010	Hs.624265	NR_046664	ENSG00000228213	NLGN1-AS1	-	NLGN1 antisense RNA 1	ncRNA	0.890	1.305	0.771	0.133	0.877	0.420	0.132	0.111	0.176	0.204	0.275	0.163	0.545	0.053	0.072	0.419	0.356	0.480	0.451	0.426	0.438	0.707	0.317	0.302	0.305	3.695	3.870	0.382	0.365	0.594	0.325	0.176	0.278	0.433	0.550	0.351	0.579	0.412	0.432	0.369	0.099	0.083	0.116	0.132	0.163		0.025	0.037	0.054
2082	chr12	93983676	93990789	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	20930	NM_001270471	8835	Hs.485572	NM_003877	ENSG00000120833	SOCS2	CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2	suppressor of cytokine signaling 2	protein-coding	0.906	0.828	0.598	0.099	0.148	0.155	0.449	6.745	0.766	0.242	0.240	0.286	nan	0.228	0.107	0.441	0.385	0.515	0.853	1.038	0.785	1.790	0.465	0.486	0.546	10.235	11.335	0.475	nan	0.406	0.241	0.314	0.401	0.447	0.627	0.301	0.415	2.325	1.445	0.664	0.126	0.468	0.023	0.449	0.286	0.353	0.029	0.088	0.068
3789	chr18	47015598	47021445	+	0	NA	promoter-TSS (NM_001199355)	promoter-TSS (NM_001199355)	313	NM_001199341	6139	Hs.293653	NM_000985	ENSG00000215472	RPL17	L17|PD-1|RPL23	ribosomal protein L17	protein-coding	nan	2.240	3.147	2.216	2.266	1.121	5.144	0.869	0.139	0.645	0.435	2.696	10.867	1.798	0.122	2.936	3.281	5.473	7.929	6.048	5.977	11.798	4.431	3.991	3.980	1.895	2.604	3.871	4.956	4.515	4.940	2.432	4.262	3.911	4.097	3.623	nan	5.849	2.996	1.027	0.914	0.584	0.814	5.144	2.696	0.928	1.167	0.819	1.332
2713	chr14	81683666	81692169	+	0	NA	promoter-TSS (NM_001278940)	promoter-TSS (NM_001278940)	-342	NM_201595	2957	Hs.592334	NM_015859	ENSG00000165417	GTF2A1	TF2A1|TFIIA|TFIIA-42|TFIIAL	general transcription factor IIA subunit 1	protein-coding	nan	3.142	5.143	7.526	5.733	2.942	5.735	3.935	0.322	1.878	1.012	4.672	11.216	3.594	0.131	5.375	5.384	6.054	8.013	12.335	10.947	6.562	3.868	16.440	17.191	4.727	6.043	9.073	12.684	10.298	10.546	3.278	5.021	6.991	7.468	5.539	5.904	5.665	3.213	8.470	6.186	1.441	4.874	5.735	4.672	1.431	2.069	1.947	2.276
4182	chr2	3351922	3373797	+	0	NA	intron (NM_001330530, intron 1 of 9)	L2c|LINE|L2	18844	NM_001330531	7260	Hs.502770	NM_003310	ENSG00000032389	TSSC1	EIPR1	tumor suppressing subtransferable candidate 1	protein-coding	0.860	0.686	0.805	0.545	0.306	0.157	0.175	0.093	0.066	0.172	0.154	0.775	1.119	0.095	0.129	0.385	0.423	0.351	0.449	1.377	1.353	1.979	0.530	0.517	0.492	0.397	0.694	1.728	1.934	0.657	0.479	0.341	0.506	0.194	0.245	0.720	1.799	0.559	0.529	1.328	3.625	0.031	0.141	0.175	0.775	0.153	0.526	0.104	0.435
6279	chr5	58779174	58790282	+	0	NA	intron (NM_001165899, intron 3 of 16)	intron (NM_001165899, intron 3 of 16)	97596	NM_006203	5144	Hs.117545	NM_006203	ENSG00000113448	PDE4D	ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1	phosphodiesterase 4D	protein-coding	nan	nan	1.033	0.094	0.341	0.304	0.219	0.209	0.120	0.241	0.224	0.161	0.243	0.359	0.087	0.309	0.300	0.427	0.899	0.240	0.263	6.094	3.999	0.394	0.364	4.575	4.771	0.368	0.295	nan	0.367	0.064	0.180	1.190	2.172	0.381	1.377	0.502	0.420	0.065	0.113	0.291	0.079	0.219	0.161		0.164	0.026	0.399
5461	chr3	111734555	111763697	+	0	NA	Intergenic	Intergenic	-9339	NM_001042575	344805	Hs.435490	NM_001042575	ENSG00000176040	TMPRSS7	-	transmembrane protease, serine 7	protein-coding	1.150	nan	0.863	0.508	1.688	0.913	0.329	0.226	0.104	0.461	0.222	2.062	1.057	0.037	0.072	0.345	0.177	0.683	1.791	0.990	nan	3.220	2.072	0.250	0.291	nan	0.359	0.774	0.989	1.263	0.874	0.114	0.154	0.499	0.748	0.568	1.184	1.294	0.801	0.119	0.326	0.120	0.504	0.329	2.062	0.342	0.311	0.044	0.613
1619	chr11	107878801	107882770	+	0	NA	intron (NM_003478, intron 1 of 18)	intron (NM_003478, intron 1 of 18)	1377	NM_003478	8065	Hs.440320	NM_003478	ENSG00000166266	CUL5	VACM-1|VACM1	cullin 5	protein-coding	3.087	2.609	2.913	4.002	4.310	2.768	2.707	1.325	0.046	1.750	0.668	4.100	8.675	4.829	0.259	17.133	19.296	6.774	10.046	9.141	10.486	7.294	5.910	15.145	15.959	4.602	5.806	6.590	10.720	8.456	8.935	11.408	15.716	4.515	4.722	7.442	4.791	2.783	1.964	2.778	2.776	0.621	2.126	2.707	4.100	0.858	1.384	2.773	2.050
6034	chr4	141055802	141080578	+	0	NA	intron (NM_018717, intron 1 of 5)	AluSc8|SINE|Alu	7043	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding	2.419	2.049	3.209	3.935	3.267	1.731	0.899	0.961	0.116	1.695	0.998	3.217	5.098	0.074	0.092	0.839	1.341	0.973	1.669	3.966	2.883	3.792	1.073	0.909	0.865	2.323	2.819	3.183	3.654	3.503	4.552	0.737	1.631	3.510	4.213	2.252	3.638	2.133	1.072	1.830	2.054	1.034	1.643	0.899	3.217	0.625	0.930	1.070	1.135
5881	chr4	41857894	41870310	+	0	NA	Intergenic	Intergenic	20526	NR_104143	101927074	Hs.611425	NR_104143	ENSG00000245870	LINC00682	-	long intergenic non-protein coding RNA 682	ncRNA	1.452	nan	nan	0.283	0.201	0.090	0.351	0.098	0.077	0.338	0.264	0.096	0.332	0.035	0.086	0.391	0.225	0.240	0.349	0.627	0.511	0.124	0.102	0.143	0.176	0.113	0.249	0.555	0.585	2.094	1.855	0.217	0.375	0.034	0.073	2.287	6.669	1.216	0.954	0.139	1.406		6.598	0.351	0.096	0.102	0.409	0.024	2.977
4265	chr2	25620241	25628254	+	0	NA	intron (NM_001256308, intron 14 of 17)	intron (NM_001256308, intron 14 of 17)	-58788	NM_175630	1788	Hs.515840	NM_022552	ENSG00000119772	DNMT3A	DNMT3A2|M.HsaIIIA|TBRS	DNA methyltransferase 3 alpha	protein-coding	2.812	1.312	4.846	0.835	0.590	0.199	2.544	0.102	0.128	4.172	2.217	0.852	3.950	0.067	0.155	0.858	1.798	0.314	0.403	9.449	7.923	11.133	4.531	0.649	0.820	3.017	3.529	2.040	nan	3.760	5.135	0.287	0.333	3.758	3.227	0.931	1.787	4.453	2.291	2.160	2.582	1.152	5.620	2.544	0.852	2.093	0.241	0.123	0.552
5219	chr22	26323849	26354053	+	0	NA	intron (NM_001318245, intron 34 of 43)	MIR|SINE|MIR	200840	NM_001318245	84700	Hs.417959	NM_032608	ENSG00000133454	MYO18B	KFS4	myosin XVIIIB	protein-coding	nan	1.089	0.972	1.293	1.361	0.648	0.724	0.084	0.059	0.753	0.251	0.782	2.980	0.040	0.079	0.238	0.410	0.082	nan	0.653	0.711	3.367	1.116	0.124	0.113	2.027	nan	0.990	1.256	2.291	2.310	0.129	0.217	1.378	1.656	1.004	nan	4.064	1.891	0.072	0.352	0.563	0.084	0.724	0.782	0.449	0.626	0.033	1.104
7598	chr8	12793561	12813872	+	0	NA	intron (NM_020844, intron 1 of 4)	intron (NM_020844, intron 1 of 4)	533	NM_020844	57604	Hs.202521	NM_020844	ENSG00000250305	KIAA1456	C8orf79|TRM9L	KIAA1456	protein-coding	2.084	2.493	nan	1.630	5.323	2.926	0.782	0.072	0.087	2.615	1.764	3.219	2.582	0.043	0.125	1.150	1.423	2.085	3.970	1.659	nan	4.500	2.589	1.600	1.547	4.081	4.324	0.123	0.132	1.271	1.195	0.152	0.301	6.544	5.692	0.880	1.288	5.059	2.880	0.030	0.890	1.576	0.254	0.782	3.219	0.273	0.055	0.029	0.366
7569	chr7	158603395	158667352	+	0	NA	Intergenic	Intergenic	-13054	NM_020728	57488	Hs.490795	NM_020728	ENSG00000117868	ESYT2	CHR2SYT|E-Syt2|FAM62B	extended synaptotagmin 2	protein-coding	1.309	0.751	nan	0.633	0.981	0.542	0.409	0.708	0.202	0.460	0.333	0.961	2.217	0.711	0.182	0.889	1.090	0.755	1.296	1.441	1.474	1.156	0.470	0.540	0.593	0.541	0.773	2.652	2.811	0.739	0.754	0.573	0.891	0.849	0.781	0.738	1.134	1.127	0.805	0.463	2.941	0.153	0.220	0.409	0.961	0.143	0.384	0.193	0.324
4007	chr19	28946789	28994863	+	0	NA	intron (NR_110759, intron 5 of 9)	AluSc8|SINE|Alu	-126769	NR_135636	102724908		NR_135636	ENSG00000266976	LOC102724908	-	uncharacterized LOC102724908	ncRNA	nan	0.623	0.469	0.081	0.308	0.167	0.091	0.087	0.101	0.058	0.107	0.065	5.834	0.038	0.099	0.204	0.135	0.443	0.323	0.189	0.221	0.155	0.059	0.100	0.093	0.150	0.313	0.124	0.143	0.287	0.097	0.325	0.466	0.126	0.083	0.107	0.181	2.043	1.020	0.061	0.064	0.022	0.015	0.091	0.065	0.053	0.038	0.189	0.059
6567	chr5	176260430	176290818	+	0	NA	intron (NM_133369, intron 1 of 14)	intron (NM_133369, intron 1 of 14)	38064	NM_133369	90249	Hs.33191	NM_133369	ENSG00000113763	UNC5A	UNC5H1	unc-5 netrin receptor A	protein-coding	0.874	0.903	0.871	0.144	0.155	0.142	0.641	0.072	0.032	0.180	0.221	0.460	7.692	0.068	0.085	0.354	0.629	0.134	nan	0.874	0.866	0.638	0.218	0.078	0.099	0.707	nan	1.846	1.885	0.721	0.791	0.274	0.335	0.365	0.452	0.330	0.756	0.569	0.389	0.893	0.721	0.069	0.065	0.641	0.460	0.189	0.488	0.114	0.101
2740	chr14	92586515	92590526	+	0	NA	promoter-TSS (NM_004545)	promoter-TSS (NM_004545)	204	NM_001322272	53981	Hs.657632	NM_017437	ENSG00000165934	CPSF2	CPSF100	cleavage and polyadenylation specific factor 2	protein-coding	9.545	4.109	5.143	6.636	4.778	3.074	6.575	6.254	0.880	2.696	1.769	7.669	11.144	5.223	0.175	9.597	7.477	9.447	12.274	13.135	13.844	6.976	4.586	23.846	27.057	7.493	9.065	8.784	13.785	15.088	13.888	9.559	12.554	8.386	9.634	7.816	5.985	nan	3.451	5.841	4.678	1.588	3.599	6.575	7.669	2.016	2.456	2.151	2.314
5703	chr3	178134750	178173393	+	0	NA	intron (NR_046786, intron 1 of 2)	MLT1B|LTR|ERVL-MaLR	17082	NR_046786	100874330	Hs.201902	NR_046786	ENSG00000223941	LINC01014	KCNMB2-IT1	long intergenic non-protein coding RNA 1014	ncRNA	1.380	1.384	1.063	1.278	3.059	1.510	0.212	0.311	0.142	2.619	1.469	0.678	1.246	0.034	0.076	0.335	0.202	0.389	0.445	1.299	1.755	8.792	4.743	0.254	0.241	0.674	0.896	2.109	1.919	0.664	0.303	0.232	0.355	2.241	2.548	0.485	0.982	1.866	1.060	0.027	0.205	0.484	0.295	0.212	0.678	0.086	0.449	0.175	0.109
208	chr1	36688292	36692649	+	0	NA	intron (NM_005119, intron 1 of 11)	intron (NM_005119, intron 1 of 11)	453	NM_005119	9967	Hs.744057	NM_005119	ENSG00000054118	THRAP3	TRAP150	thyroid hormone receptor associated protein 3	protein-coding	5.337	nan	4.100	7.940	3.686	1.905	2.507	4.137	0.554	2.586	1.186	5.737	9.171	5.371	0.121	3.488	2.894	6.728	9.272	9.141	7.939	nan	2.613	11.718	12.902	4.933	5.883	11.099	17.923	nan	4.229	4.118	6.545	2.188	3.096	5.811	5.402	2.779	nan	3.069	2.169	0.418	1.878	2.507	5.737	0.649	2.139	1.885	1.391
6318	chr5	71300297	71320060	+	0	NA	Intergenic	Intergenic	-92917	NM_005909	4131	Hs.335079	NM_005909	ENSG00000131711	MAP1B	FUTSCH|MAP5|PPP1R102	microtubule associated protein 1B	protein-coding	1.142	nan	0.856	0.201	2.550	1.367	1.197	0.152	0.065	0.270	0.153	0.327	1.152	0.077	0.091	0.289	0.269	0.219	0.261	0.849	0.660	nan	3.436	0.174	0.142	0.488	nan	0.557	0.652	1.077	0.776	0.164	0.200	2.055	2.160	0.687	1.716	0.862	0.595	0.479	0.264	0.368	0.306	1.197	0.327	0.044	0.231	0.105	0.610
2773	chr14	101292039	101327316	+	0	NA	intron (NR_002766, intron 5 of 6)	intron (NR_002766, intron 5 of 6)	-9050	NR_030528	768222		NR_030528	ENSG00000211574	MIR770	MIRN770|hsa-mir-770	microRNA 770	ncRNA	1.422	0.938	0.491	0.059	3.017	1.518	1.836	0.111	0.071	0.115	0.109	0.681	1.203	0.065	0.100	0.189	0.099	0.143	0.204	1.522	1.728	0.907	0.393	0.050	0.061	0.149	0.283	1.011	1.411	1.418	1.168	0.123	0.145	0.687	0.597	0.459	0.735	1.004	0.616	0.246	0.430	0.116	2.223	1.836	0.681	0.452	1.022	0.011	0.056
292	chr1	46824127	46847186	+	0	NA	Intergenic	Intergenic	-24283	NM_001441	2166	Hs.720143	NM_001441	ENSG00000117480	FAAH	FAAH-1|PSAB	fatty acid amide hydrolase	protein-coding	nan	0.876	nan	0.111	0.327	0.202	0.214	0.188	0.182	0.184	0.186	0.083	0.304	0.108	0.147	0.280	0.347	0.293	0.367	0.551	0.654	0.370	0.133	0.371	0.388	0.437	nan	nan	0.434	0.614	0.396	0.187	nan	0.067	0.046	1.529	7.101	0.366	0.318	0.051	0.104	0.017	0.070	0.214	0.083	0.025	0.044	0.030	1.941
6455	chr5	134868635	134883280	+	0	NA	Intergenic	Intergenic	-4318	NM_006161	4762	Hs.248149	NM_006161	ENSG00000181965	NEUROG1	AKA|Math4C|NEUROD3|bHLHa6|ngn1	neurogenin 1	protein-coding	1.617	0.961	nan	0.132	0.341	0.131	0.378	0.055	0.011	0.043	0.062	0.606	0.746	0.081	0.104	0.371	0.308	0.406	0.558	0.734	0.974	0.788	0.285	0.203	0.297	0.523	0.846	0.156	0.174	3.609	3.132	0.272	0.252	0.248	0.143	3.457	7.025	0.248	0.321	0.129	1.264	0.020	0.302	0.378	0.606	0.153	0.028	0.048	3.897
4039	chr19	36756792	36800862	+	0	NA	Intergenic	Intergenic	-23418	NR_029389	100134317	Hs.466550	NR_029389		LOC100134317	-	uncharacterized LOC100134317	ncRNA	0.538	0.889	0.833	0.713	0.388	0.238	1.019	0.182	0.245	0.135	0.198	0.217	1.961	0.701	0.368	1.402	1.783	0.478	0.680	1.158	1.117	0.365	0.224	1.825	1.672	0.346	0.706	2.160	4.063	nan	0.364	0.472	0.427	0.217	0.296	0.313	0.418	0.671	0.669	0.084	0.448	0.210	0.168	1.019	0.217	0.439	0.172	0.090	0.109
2445	chr13	111151196	111196020	+	0	NA	Intergenic	Intergenic	-13082	NR_046583	100874203	Hs.508716	NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	ncRNA	0.494	nan	0.861	0.717	0.498	0.197	0.570	0.157	0.072	0.150	0.103	0.823	1.005	0.056	0.062	0.486	0.241	0.270	0.596	1.002	0.960	1.786	0.426	0.213	0.220	0.047	0.064	3.385	3.401	0.390	0.237	0.369	0.525	0.138	0.178	0.256	0.307	0.182	0.147	5.075	1.043	0.032	0.067	0.570	0.823	0.009	0.453	0.084	0.086
291	chr1	46765938	46776223	+	0	NA	intron (NM_001297566, intron 1 of 2)	intron (NM_001297566, intron 1 of 2)	1795	NM_006004	7388	Hs.481571	NM_006004	ENSG00000173660	UQCRH	QCR6|UQCR8	ubiquinol-cytochrome c reductase hinge protein	protein-coding	nan	2.512	nan	2.658	3.479	1.729	3.139	2.589	0.408	1.951	1.101	1.662	6.592	2.456	0.208	4.173	4.368	4.909	6.812	8.782	10.181	3.424	2.514	12.881	13.571	4.505	nan	nan	9.119	4.828	4.678	8.956	nan	2.020	2.188	7.502	8.792	2.429	1.317	3.020	2.961	0.295	1.929	3.139	1.662	1.037	2.071	3.437	4.787
3703	chr18	25658917	25669451	+	0	NA	intron (NM_001792, intron 2 of 15)	intron (NM_001792, intron 2 of 15)	-47635	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding	0.757	0.821	0.830	0.195	0.411	0.243	0.791	0.433	0.061	0.096	0.163	0.086	0.575	0.103	0.097	5.430	6.212	2.810	nan	0.551	0.791	0.790	0.334	2.163	2.187	0.773	1.010	0.956	0.894	0.421	0.226	0.874	1.212	0.350	0.390	0.340	0.452	0.750	0.813	0.064	0.042	0.064	0.170	0.791	0.086	0.083	0.173	0.443	0.106
7232	chr7	29464045	29483756	+	0	NA	intron (NM_001293071, intron 5 of 11)	intron (NM_001293071, intron 5 of 11)	-45428	NM_001293076	1124	Hs.654611	NM_004067	ENSG00000106069	CHN2	ARHGAP3|BCH|CHN2-3|RHOGAP3	chimerin 2	protein-coding	1.653	1.141	1.448	0.244	0.464	0.146	0.267	0.109	0.114	0.596	0.217	0.518	0.435	0.077	0.164	0.502	0.557	0.327	nan	0.368	0.546	0.904	0.649	0.600	0.544	0.169	0.327	0.563	1.128	0.424	0.228	0.314	0.508	0.195	0.270	1.157	nan	0.724	0.426	0.040	0.181	0.044	0.366	0.267	0.518	0.089	0.113	0.381	2.193
8205	chr9	95086554	95089018	+	0	NA	promoter-TSS (NM_001330722)	promoter-TSS (NM_001330722)	36	NM_001012267	401541	Hs.713775	NM_001012267	ENSG00000188312	CENPP	CENP-P	centromere protein P	protein-coding	5.248	4.368	6.423	11.181	6.990	3.114	5.525	4.021	0.132	3.287	1.448	5.760	8.125	3.904	0.177	8.166	6.813	9.926	14.159	10.463	12.533	7.616	5.485	13.883	16.143	3.796	4.739	11.044	18.850	21.002	19.101	7.300	9.361	12.113	15.847	8.982	6.974	6.850	3.523	1.667	4.298	1.902	2.143	5.525	5.760	2.286	2.507	2.119	2.414
114	chr1	18397793	18408506	+	0	NA	Intergenic	Intergenic	10998	NR_125946	101927876	Hs.522954	NR_125946	ENSG00000261781	LINC01654	-	long intergenic non-protein coding RNA 1654	ncRNA	0.811	0.567	nan	0.065	5.193	3.232	0.222	0.084	0.149	0.248	0.178	1.520	7.793	0.047	0.069	0.458	0.676	0.165	0.267	7.422	6.550	0.150	0.050	0.673	nan	0.389	nan	4.554	3.769	nan	2.427	0.436	0.699	0.272	0.234	0.294	0.563	2.170	1.101	5.371	7.004	0.079	0.035	0.222	1.520	0.343	0.241	0.292	0.150
5714	chr3	179643366	179700921	+	0	NA	intron (NM_001256750, intron 1 of 14)	intron (NM_001256750, intron 1 of 14)	19865	NM_001256755	51555	Hs.235331	NM_016559	ENSG00000114757	PEX5L	PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b	peroxisomal biogenesis factor 5 like	protein-coding	1.338	1.116	1.235	1.726	1.087	0.522	0.215	0.148	0.130	2.260	0.948	1.070	1.114	0.026	0.090	0.694	0.697	1.547	1.103	1.155	1.400	6.143	2.490	0.315	0.343	0.227	0.368	3.935	4.084	3.384	2.934	1.531	2.218	0.638	0.710	1.576	5.444	1.482	0.882	0.312	1.149	0.481	0.294	0.215	1.070	0.077	1.005	2.094	1.336
5778	chr3	192073034	192096277	+	0	NA	intron (NM_004113, intron 2 of 5)	L3|LINE|CR1	42183	NM_021032	2257	Hs.390250	NM_004113	ENSG00000114279	FGF12	EIEE47|FGF12B|FHF1	fibroblast growth factor 12	protein-coding	nan	1.141	1.268	0.275	1.826	0.885	0.188	0.112	0.139	0.793	0.427	0.221	nan	0.065	0.103	0.311	0.262	0.293	0.301	1.197	0.969	2.831	2.137	0.606	0.586	4.683	5.371	1.298	1.090	1.550	1.388	0.140	0.254	0.868	0.968	2.108	5.223	0.838	0.697	0.048	0.350	0.151	0.530	0.188	0.221	0.573	0.183	0.060	1.292
4879	chr20	20617254	20659270	+	0	NA	intron (NM_020343, intron 3 of 39)	intron (NM_020343, intron 3 of 39)	55004	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic alpha subunit 2	protein-coding	1.047	1.402	nan	0.616	0.382	0.211	0.140	0.228	0.173	0.306	0.269	0.320	0.521	0.049	0.078	0.694	0.752	0.323	0.462	0.623	0.796	0.676	0.281	0.309	0.278	2.985	3.654	1.975	1.994	1.008	0.590	0.278	0.436	0.233	0.252	0.351	0.675	1.107	0.677	0.090	0.095	0.061	0.038	0.140	0.320	0.113	0.127	0.160	0.156
4894	chr20	23329811	23347600	+	0	NA	promoter-TSS (NR_109884)	promoter-TSS (NR_109884)	59	NR_109884	100505683	Hs.140295	NR_109884	ENSG00000232645	LINC01431	-	long intergenic non-protein coding RNA 1431	ncRNA	3.638	3.803	nan	3.828	2.044	1.134	2.131	2.601	0.271	1.258	0.581	2.254	5.334	1.644	0.090	4.157	4.289	2.590	4.321	3.847	2.840	5.402	2.294	5.281	5.216	2.287	2.879	5.295	7.525	4.676	5.272	2.029	3.659	3.645	3.955	3.112	3.592	2.279	1.434	1.560	1.543	0.504	0.625	2.131	2.254	0.974	2.278	1.522	1.058
73	chr1	10088387	10125548	+	0	NA	intron (NM_006048, intron 1 of 26)	MLT1J-int|LTR|ERVL-MaLR	13926	NM_006048	10277	Hs.593974	NM_006048	ENSG00000130939	UBE4B	E4|HDNB1|UBOX3|UFD2|UFD2A	ubiquitination factor E4B	protein-coding	1.523	1.189	nan	2.277	0.629	0.349	0.451	0.729	0.336	0.300	0.230	0.364	2.218	0.844	0.165	0.806	0.870	0.835	1.310	1.488	1.630	0.425	0.191	1.494	nan	2.259	nan	4.518	6.183	nan	1.332	0.348	0.526	0.308	0.389	1.612	3.220	0.909	0.596	0.804	0.383	0.054	0.237	0.451	0.364	0.617	0.240	0.176	1.257
7886	chr8	115597447	115602609	+	0	NA	Intergenic	Intergenic	1080211	NM_001282902	7227	Hs.657018	NM_014112	ENSG00000104447	TRPS1	GC79|LGCR	transcriptional repressor GATA binding 1	protein-coding	nan	nan	0.914	2.396	2.680	1.304	0.201	0.167	0.093	0.182	0.095	6.494	0.644	0.063	0.076	2.942	3.868	0.108	0.076	0.363	0.439	nan	0.207	20.052	nan	0.407	nan	5.145	7.485	0.280	0.133	3.578	5.472	0.151	0.177	0.228	0.366	0.416	0.591	0.115	0.308	0.056	0.278	0.201	6.494	0.031	2.901	1.642	0.023
5479	chr3	114858906	114868323	+	0	NA	intron (NM_015642, intron 1 of 9)	intron (NM_015642, intron 1 of 9)	2513	NM_015642	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding	4.463	nan	2.808	2.201	4.044	2.095	2.067	2.727	0.176	1.895	0.780	3.207	3.465	1.687	0.120	2.416	3.650	4.177	4.690	5.360	nan	5.160	2.648	4.436	5.047	nan	5.709	2.065	3.585	7.116	7.826	1.166	2.354	2.013	1.688	2.975	4.502	1.758	1.216	2.993	2.183	0.436	1.329	2.067	3.207	0.959	1.432	1.304	2.481
241	chr1	40218013	40230261	+	0	NA	3' UTR (NM_001720, exon 7 of 7)	3' UTR (NM_001720, exon 7 of 7)	12883	NM_022120	64064	Hs.472491	NM_022120	ENSG00000198754	OXCT2	FKSG25|SCOTT	3-oxoacid CoA-transferase 2	protein-coding	16.754	0.607	nan	2.902	0.348	0.140	4.608	0.090	0.119	0.493	0.523	0.207	0.327	0.098	0.087	0.310	0.256	0.365	0.431	0.980	1.002	0.332	0.203	0.365	0.437	0.915	nan	23.412	26.054	0.793	0.847	0.421	nan	0.189	0.204	0.362	0.561	13.607	9.224	0.140	0.124	0.031	0.058	4.608	0.207	0.257	0.017	0.145	0.204
2561	chr14	36960212	36998858	+	0	NA	intron (NR_138596, intron 1 of 4)	intron (NR_138596, intron 1 of 4)	3455	NR_138598	253970	Hs.509165	NM_001101341	ENSG00000229415	SFTA3	NANCI|SFTPH|SP-H	surfactant associated 3	protein-coding	2.148	7.491	0.514	7.054	2.565	1.394	2.262	0.139	0.083	0.516	0.313	8.436	14.891	0.076	0.106	0.169	0.085	0.801	0.883	23.866	22.330	0.128	0.071	0.282	0.306	1.417	1.741	7.450	7.483	20.181	20.749	0.135	0.154	0.473	0.347	0.086	0.145	3.308	1.775	19.542	13.110	0.170	0.133	2.262	8.436	0.238	2.913	0.023	0.023
8066	chr9	14605162	14617365	+	0	NA	3' UTR (NM_178566, exon 10 of 10)	3' UTR (NM_178566, exon 10 of 10)	82217	NM_178566	340481	Hs.649522	NM_178566	ENSG00000175893	ZDHHC21	9130404H11Rik|DHHC-21|DHHC21|DNZ1|HSPC097	zinc finger DHHC-type containing 21	protein-coding	nan	nan	0.919	0.269	0.320	0.309	0.188	0.128	0.082	3.325	2.246	0.167	0.464	0.009	0.086	0.280	0.212	0.348	0.428	0.461	0.525	5.800	1.483	0.164	0.182	69.331	59.663	0.334	0.310	0.422	0.159	0.428	0.637	0.417	0.440	0.294	1.130	2.725	1.336	0.049	0.088	0.087	0.102	0.188	0.167	0.008	2.007	0.187	0.293
6007	chr4	117671734	117682670	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	329534	NM_152402	133022	Hs.570737	NM_152402	ENSG00000174599	TRAM1L1	-	translocation associated membrane protein 1-like 1	protein-coding	0.431	0.648	0.434	0.120	0.146	0.102	0.106	0.054	0.032	0.029	0.109	0.099	0.148	0.030	0.094	0.226	0.182	0.087	0.182	0.124	0.165	0.076	0.038	0.122	0.135	6.568	6.690	0.189	0.205	0.325	0.157	0.101	0.138	0.054	0.046	0.175	0.386	0.159	0.224	0.015		0.009	0.022	0.106	0.099		0.013	0.027	0.096
1970	chr12	57021546	57032342	+	0	NA	intron (NM_013449, intron 1 of 28)	intron (NM_013449, intron 1 of 28)	-2829	NM_001300905	11176	Hs.314263	NM_013449	ENSG00000076108	BAZ2A	TIP5|WALp3	bromodomain adjacent to zinc finger domain 2A	protein-coding	nan	2.606	2.737	2.770	2.800	1.782	2.079	2.784	0.343	2.371	1.070	2.802	6.997	1.839	0.080	nan	3.892	3.135	4.870	5.323	nan	5.476	1.944	5.590	6.089	2.208	nan	5.492	nan	4.660	4.092	1.434	3.327	2.345	2.534	4.018	8.714	2.770	1.291	0.938	4.798	0.804	1.240	2.079	2.802	0.929	2.077	1.530	3.319
4697	chr2	210408621	210422682	+	0	NA	intron (NM_001039538, intron 2 of 14)	intron (NM_001039538, intron 2 of 14)	-28752	NM_031847	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding	nan	0.952	nan	0.262	0.386	0.170	0.347	0.368	0.171	0.189	0.173	0.334	0.465	0.493	0.073	0.317	0.252	0.323	0.543	0.286	0.331	0.470	0.194	0.446	0.488	3.117	3.483	0.905	nan	1.291	0.741	0.153	0.231	0.230	0.363	0.361	0.704	0.413	0.350	0.150	0.101	0.095	0.373	0.347	0.334	0.014	0.094	0.042	0.230
2391	chr13	99047256	99073345	+	0	NA	intron (NM_005766, intron 13 of 26)	intron (NM_005766, intron 13 of 26)	114079	NM_003576	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding	0.889	2.571	1.211	0.609	0.444	0.228	0.967	0.076	0.076	0.366	0.228	1.045	1.259	0.072	0.062	0.568	0.539	0.286	0.453	1.145	1.240	1.796	0.571	0.141	0.167	0.237	nan	2.687	2.541	0.303	0.191	0.370	0.510	0.739	0.737	0.368	nan	0.603	0.235	4.953	2.910	0.171	0.252	0.967	1.045	0.049	0.566	0.099	0.114
4125	chr19	48891695	48905844	+	0	NA	intron (NM_000836, intron 1 of 12)	intron (NM_000836, intron 1 of 12)	637	NM_000836	2906	Hs.445015	NM_000836	ENSG00000105464	GRIN2D	EB11|EIEE46|GluN2D|NMDAR2D|NR2D	glutamate ionotropic receptor NMDA type subunit 2D	protein-coding	2.487	1.455	2.004	1.170	2.975	1.872	1.949	0.645	0.212	0.539	0.260	1.576	2.828	2.773	0.108	1.458	2.177	1.824	2.836	3.175	3.109	9.159	3.609	4.818	5.391	2.822	3.794	2.819	3.983	3.759	2.741	1.704	2.084	1.699	1.986	2.581	4.461	2.440	1.354	0.912	3.002	0.626	0.636	1.949	1.576	1.234	1.340	0.641	1.177
4559	chr2	159820494	159827118	+	0	NA	Intergenic	Intergenic	-1340	NM_001145909	85461	Hs.61590	NM_033394	ENSG00000115183	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	nan	2.678	nan	2.487	1.371	0.846	2.671	5.001	0.510	0.448	0.386	1.395	3.741	1.413	0.092	2.580	3.553	4.294	7.430	2.228	1.701	0.652	0.126	1.969	1.910	6.867	8.164	2.329	3.494	2.142	2.490	1.615	5.356	1.090	1.110	2.433	3.972	0.844	0.466	1.503	1.051	0.328	1.532	2.671	1.395	0.467	1.299	1.682	1.050
1864	chr12	22776940	22782709	+	0	NA	intron (NM_018638, intron 1 of 7)	intron (NM_018638, intron 1 of 7)	1748	NM_001039481	55500	Hs.29464	NM_018638	ENSG00000139163	ETNK1	EKI|EKI 1|EKI1|Nbla10396	ethanolamine kinase 1	protein-coding	nan	nan	nan	7.496	4.209	1.923	1.510	0.777	0.011	3.094	1.390	3.878	6.198	2.202	0.115	2.576	2.580	7.511	11.045	8.333	7.103	8.058	5.183	19.222	19.851	4.028	4.836	4.608	9.280	4.435	4.657	4.007	8.420	3.294	3.324	4.660	5.693	2.016	0.937	1.674	1.664	0.281	1.154	1.510	3.878	0.874	0.969	2.876	1.632
3675	chr18	18940715	18949233	+	0	NA	intron (NM_001142966, intron 1 of 32)	intron (NM_001142966, intron 1 of 32)	122771	NM_001142966	80000	Hs.149020	NM_024935	ENSG00000141449	GREB1L	C18orf6|KIAA1772	growth regulation by estrogen in breast cancer 1 like	protein-coding	1.161	1.126	1.274	0.164	0.235	0.114	0.395	0.045	0.038	0.129	0.136	0.289	0.306	0.148	0.075	0.442	0.347	0.271	1.116	0.380	0.540	4.603	1.419	0.259	0.273	0.103	0.189	0.146	0.127	1.615	1.614	0.102	0.156	4.946	6.510	1.394	2.462	0.845	0.706	0.013	0.047	1.346	0.366	0.395	0.289		0.012	0.035	2.091
4765	chr2	236401888	236416206	+	0	NA	intron (NM_001037131, intron 1 of 17)	MER5A|DNA|hAT-Charlie	-5348	NR_131900	100506749	Hs.684184	NR_131900	ENSG00000235529	AGAP1-IT1	-	AGAP1 intronic transcript 1	ncRNA	1.695	nan	2.672	2.636	1.179	0.681	1.226	0.295	0.023	0.868	0.590	3.120	2.696	0.576	0.095	1.190	1.840	1.023	1.656	2.796	2.585	2.529	0.572	2.415	2.393	0.658	1.083	3.445	nan	5.717	5.443	2.580	4.182	0.750	0.804	0.205	0.219	0.932	0.612	1.195	1.332	0.094	1.066	1.226	3.120	0.269	0.558	2.229	0.059
3491	chr17	60876956	60887314	+	0	NA	intron (NM_152598, intron 1 of 10)	intron (NM_152598, intron 1 of 10)	1879	NM_001100875	162333	Hs.665663	NM_152598	ENSG00000173838	MARCH10	MARCH-X|RNF190	membrane associated ring-CH-type finger 10	protein-coding	1.725	nan	0.826	0.604	3.188	1.753	1.635	0.159	0.109	0.678	0.308	5.069	2.463	0.137	0.088	2.527	3.558	1.786	1.980	2.286	1.839	1.631	0.518	4.061	4.385	0.282	nan	6.240	8.531	1.292	1.015	0.891	1.177	0.710	0.840	0.395	0.493	1.241	0.921	0.360	3.585	0.073	1.520	1.635	5.069	0.177	1.205	0.295	0.079
3952	chr19	5891154	5913290	+	0	NA	intron (NR_034166, intron 1 of 4)	AluY|SINE|Alu	1802	NM_175614	126328	Hs.406062	NM_175614	ENSG00000174886	NDUFA11	B14.7|CI-B14.7	NADH:ubiquinone oxidoreductase subunit A11	protein-coding	1.780	1.814	3.361	1.688	0.994	0.570	0.625	0.489	0.221	0.623	0.382	0.775	3.008	0.441	0.081	1.271	1.238	2.460	3.120	2.024	2.123	2.513	0.778	2.832	3.161	1.267	1.809	2.740	nan	2.409	2.500	0.734	1.142	3.373	4.542	1.355	1.530	2.115	1.027	0.452	0.510	1.264	0.193	0.625	0.775	0.394	0.842	0.235	0.252
7261	chr7	39987408	39994173	+	0	NA	exon (NM_031267, exon 1 of 14)	exon (NM_031267, exon 1 of 14)	831	NM_003718	8621	Hs.233552	NM_003718	ENSG00000065883	CDK13	CDC2L|CDC2L5|CHED|hCDK13	cyclin dependent kinase 13	protein-coding	7.991	4.710	7.963	4.425	5.272	2.705	3.891	3.663	0.403	2.888	1.564	4.880	10.138	6.221	0.168	5.900	8.501	5.352	8.595	9.844	nan	7.599	3.088	18.362	18.638	4.445	nan	nan	10.948	5.502	6.400	4.121	10.204	5.684	5.095	7.606	nan	2.897	1.720	3.090	6.126	1.465	8.241	3.891	4.880	1.075	4.402	1.903	3.311
2375	chr13	93911169	93939476	+	0	NA	intron (NM_005708, intron 1 of 8)	intron (NM_005708, intron 1 of 8)	46261	NM_005708	10082	Hs.444329	NM_005708	ENSG00000183098	GPC6	OMIMD1	glypican 6	protein-coding	1.204	1.218	1.092	0.074	0.235	0.182	0.430	0.143	0.097	0.100	0.095	0.125	0.332	0.042	0.080	0.588	0.546	0.386	0.592	0.389	0.481	0.586	0.238	0.124	0.108	0.476	0.469	0.725	0.626	1.143	0.864	0.194	0.381	0.931	1.306	2.168	5.413	0.149	0.162	0.096	0.147	0.229	0.323	0.430	0.125	0.062	0.065	0.104	1.138
24	chr1	1670098	1679600	+	0	NA	intron (NM_182838, intron 1 of 5)	AluSp|SINE|Alu	2589	NM_182838	9906	Hs.655255	NM_182838	ENSG00000215790	SLC35E2	-	solute carrier family 35 member E2	protein-coding	2.920	nan	3.416	3.821	3.292	1.586	1.791	1.603	0.544	1.178	0.789	1.700	5.588	3.099	0.228	3.773	4.070	3.082	4.358	6.574	6.386	2.749	1.857	7.674	7.941	3.243	nan	10.616	12.056	nan	3.466	2.092	3.043	2.001	2.268	4.594	4.048	1.820	0.982	3.360	3.563	0.561	0.734	1.791	1.700	1.391	1.600	1.211	1.676
2759	chr14	99878316	99895239	+	0	NA	intron (NM_199123, intron 6 of 8)	intron (NM_199123, intron 6 of 8)	60449	NM_032233	84193	Hs.510407	NM_032233	ENSG00000183576	SETD3	C14orf154	SET domain containing 3	protein-coding	1.627	0.918	1.266	0.161	0.458	0.256	0.546	0.207	0.067	0.239	0.148	0.218	0.382	0.140	0.149	0.454	0.708	0.226	0.439	0.672	0.891	1.047	0.211	0.179	0.207	0.906	1.183	1.418	1.189	2.003	2.010	0.412	1.012	0.224	0.196	2.014	5.915	1.955	0.914	0.618	0.275	0.045	0.118	0.546	0.218	0.046	0.226	0.333	1.957
8348	chr9	140908402	140919236	+	0	NA	intron (NM_000718, intron 18 of 45)	intron (NM_000718, intron 18 of 45)	25704	NR_121582	101928786	Hs.678847	NR_121582		LOC101928786	-	uncharacterized LOC101928786	ncRNA	0.985	1.536	4.648	1.292	0.984	0.598	1.073	0.063	0.029	0.315	0.198	2.331	3.568	0.010	0.037	0.239	0.337	0.213	nan	7.745	nan	3.312	1.788	2.179	2.010	0.131	0.275	3.830	10.938	0.568	0.530	1.077	1.875	2.142	2.031	0.157	0.294	2.107	1.407	5.662	0.486	0.273	0.315	1.073	2.331	0.634	0.101	0.681	0.081
3321	chr17	19962624	19969846	+	0	NA	intron (NM_001243439, intron 1 of 14)	AluSz|SINE|Alu	-24100	NM_001033553	92521	Hs.431045	NM_152904	ENSG00000128487	SPECC1	CYTSB|HCMOGT-1|HCMOGT1|NSP	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.863	1.927	1.643	0.396	0.668	0.358	0.303	0.249	0.156	0.130	0.103	0.117	0.722	0.075	0.076	0.777	1.001	0.294	nan	0.317	0.368	2.640	0.460	0.227	0.221	4.159	4.903	2.950	4.426	nan	0.279	0.252	0.487	4.101	7.225	0.306	0.761	0.502	0.294	0.994	0.139	0.859	0.155	0.303	0.117	0.156	0.435	0.165	0.154
7014	chr6	142669757	142711358	+	0	NA	intron (NM_001032394, intron 3 of 24)	MIR|SINE|MIR	67501	NM_001032395	57211	Hs.743302	NM_020455	ENSG00000112414	ADGRG6	APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR	adhesion G protein-coupled receptor G6	protein-coding	nan	0.765	nan	0.225	0.276	0.170	0.226	0.693	0.123	0.057	0.075	0.115	1.008	6.581	0.206	0.392	0.337	0.625	1.210	0.328	0.382	0.223	0.127	0.248	0.227	0.115	0.203	0.258	0.301	0.683	0.343	0.170	0.213	0.163	0.146	0.159	0.291	0.181	0.227	0.110	0.055	0.018	0.038	0.226	0.115	0.058	0.100	0.041	0.103
104	chr1	16821568	16846375	+	0	NA	Intergenic	Intergenic	-14775	NR_023386	114819	Hs.597881	NR_023386	ENSG00000080947	CROCCP3	CROCCL2|dJ798A10.2	ciliary rootlet coiled-coil, rootletin pseudogene 3	pseudo	3.428	2.443	nan	3.545	2.390	1.281	2.484	0.769	0.240	1.339	0.895	1.507	4.682	2.190	0.223	2.981	3.633	1.966	2.776	5.178	5.175	3.473	2.204	4.069	nan	2.761	nan	5.411	6.955	nan	3.358	2.992	3.699	1.308	1.271	3.305	5.449	2.929	1.762	3.181	2.049	0.383	1.019	2.484	1.507	1.380	1.068	1.472	2.589
8156	chr9	74964005	74981978	+	0	NA	intron (NM_006007, intron 4 of 5)	intron (NM_006007, intron 4 of 5)	6517	NM_001278243	7763	Hs.406096	NM_006007	ENSG00000107372	ZFAND5	ZA20D2|ZFAND5A|ZNF216	zinc finger AN1-type containing 5	protein-coding	nan	nan	nan	3.214	2.380	1.361	1.584	1.545	0.161	1.422	0.694	2.174	3.870	1.460	0.097	2.155	2.685	3.443	nan	4.757	nan	2.206	1.228	10.409	10.585	1.309	1.528	3.635	5.752	1.809	1.768	1.141	2.583	3.557	3.513	2.512	2.756	1.650	1.118	0.711	1.444	0.795	1.275	1.584	2.174	0.681	1.331	0.914	1.118
3493	chr17	61224121	61250322	+	0	NA	intron (NM_025185, intron 3 of 24)	MLT1A|LTR|ERVL-MaLR	150323	NM_025185	26115	Hs.410889	NM_015623	ENSG00000170921	TANC2	ROLSA|rols	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	1.934	nan	1.148	0.151	0.422	0.264	0.293	0.915	0.229	0.127	0.210	0.224	0.339	0.265	0.138	1.698	1.721	2.713	2.359	1.150	1.248	0.326	0.169	2.072	2.155	2.498	nan	0.516	0.649	3.353	2.364	0.570	1.007	0.170	0.148	2.298	5.673	0.659	0.648	0.011	0.108	0.047	0.266	0.293	0.224	0.295	0.058	0.397	2.102
7960	chr8	140712810	140733407	+	0	NA	Intergenic	MIRb|SINE|MIR	-7809	NM_001282534	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding	1.625	0.831	nan	0.855	0.837	0.444	0.643	0.062	0.078	0.053	0.061	1.192	5.827	0.047	0.073	0.266	0.268	0.168	0.251	nan	1.082	nan	0.568	0.226	0.216	0.299	0.589	0.832	0.980	0.698	0.875	0.324	0.394	0.408	0.571	0.180	0.320	0.620	0.475	2.044	1.626	0.051	0.111	0.643	1.192	0.301	2.029	0.087	0.089
4371	chr2	56352140	56357262	+	0	NA	Intergenic	Intergenic	-37184	NR_135590	101927165	Hs.679803	NR_135590		LINC01813	-	long intergenic non-protein coding RNA 1813	ncRNA	0.996	nan	0.992	0.524	1.945	1.251	3.613	0.211	0.062	3.152	1.633	5.422	2.999	0.063	0.126	2.252	4.197	0.504	0.726	5.671	3.983	13.262	7.854	1.498	1.677	0.621	1.067	1.418	1.642	0.524	0.562	3.255	4.398	1.632	1.658	0.422	1.452	2.716	1.577	0.087	3.990	0.169	1.566	3.613	5.422	0.131	0.969	2.893	0.303
2175	chr12	120630153	120640509	+	0	NA	intron (NM_001002, intron 6 of 7)	intron (NM_001002, intron 6 of 7)	-2818	NM_006836	10985	Hs.298716	NM_006836	ENSG00000089154	GCN1	GCN1L|GCN1L1|PRIC295	GCN1, eIF2 alpha kinase activator homolog	protein-coding	3.547	2.464	2.626	3.513	3.291	1.737	2.997	1.608	0.701	2.501	1.562	3.912	5.936	4.075	0.225	4.880	5.156	4.608	7.110	6.171	5.685	8.787	3.661	7.899	8.452	4.258	5.845	8.274	9.381	6.518	7.884	3.968	6.366	5.341	5.878	6.168	5.125	4.412	2.679	2.636	3.742	0.831	1.535	2.997	3.912	1.237	2.420	1.505	1.789
1513	chr11	72522644	72546675	+	0	NA	intron (NM_033388, intron 7 of 17)	intron (NM_033388, intron 7 of 17)	9208	NM_001318766	89849	Hs.653186	NM_033388	ENSG00000168010	ATG16L2	ATG16B|WDR80	autophagy related 16 like 2	protein-coding	nan	1.408	1.911	1.617	0.882	0.360	1.102	0.718	0.128	0.465	0.292	1.477	2.694	1.058	0.124	2.165	2.832	2.213	2.901	3.126	3.098	3.223	1.617	4.550	5.014	1.606	2.214	2.781	4.380	1.586	1.603	1.474	1.902	1.326	1.346	1.231	1.467	1.302	0.739	1.614	1.222	0.222	0.891	1.102	1.477	0.335	1.295	0.618	0.492
1264	chr10	134197032	134267406	+	0	NA	TTS (NM_001098637)	TTS (NM_001098637)	21517	NM_001098637	170394	Hs.527751	NM_138499	ENSG00000171813	PWWP2B	PWWP2|bA432J24.1|pp8607	PWWP domain containing 2B	protein-coding	0.885	1.660	2.088	1.176	1.508	0.785	0.493	0.095	0.041	0.185	0.135	1.555	3.931	0.271	0.062	1.374	2.779	0.555	1.141	0.721	0.589	1.015	0.338	0.474	0.510	0.205	0.375	4.260	4.608	0.702	0.713	0.709	1.116	0.765	0.669	0.569	1.091	0.764	0.475	2.151	1.826	0.160	0.728	0.493	1.555	0.228	0.852	0.782	0.319
4905	chr20	26049474	26053968	+	0	NA	intron (NR_026713, intron 2 of 4)	L2c|LINE|L2	16471	NR_026713	284800	Hs.516956	NM_182583	ENSG00000125804	FAM182A	C20orf91|bB329D4.1	family with sequence similarity 182 member A	ncRNA	1.356	1.614	nan	0.158	0.284	0.071	0.369	0.215	0.246	0.167	0.084	0.106	0.582	0.110	0.103	3.311	8.417	11.559	2.899	0.575	0.810	0.413	0.200	0.840	0.794	0.461	0.899	0.418	0.664	0.942	0.402	0.702	1.142	0.160	0.190	0.383	0.398	0.518	0.879	0.013	0.118	0.107	0.072	0.369	0.106	0.121	0.156	0.088	0.048
47	chr1	6496411	6559940	+	0	NA	exon (NM_001265592, exon 21 of 22)	exon (NM_001265592, exon 21 of 22)	-1920	NM_148970	8718	Hs.462529	NM_003790	ENSG00000215788	TNFRSF25	APO-3|DDR3|DR3|LARD|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR	TNF receptor superfamily member 25	protein-coding	1.335	nan	1.426	2.117	1.272	0.729	0.360	0.123	0.121	0.390	0.298	1.270	1.324	0.370	0.105	2.797	4.527	1.299	1.466	3.235	2.935	1.362	0.446	8.005	8.159	0.351	nan	nan	3.878	nan	0.551	2.897	4.186	0.480	0.371	0.389	0.676	0.945	0.528	2.207	1.732	0.083	0.285	0.360	1.270	0.446	0.278	2.683	0.066
5332	chr3	16841942	16851615	+	0	NA	Intergenic	L1M5|LINE|L1	-79674	NM_001144382	23228	Hs.202010	NM_015184	ENSG00000154822	PLCL2	PLCE2	phospholipase C like 2	protein-coding	nan	1.021	2.487	0.027	0.221	0.066	0.026	0.086	0.064	0.098	0.051	0.062	0.287	0.034	0.082	0.528	0.586	0.330	0.295	0.598	0.511	0.102	0.044	0.137	0.131	2.438	2.563	0.492	0.462	8.505	8.431	0.181	0.228	1.141	1.185	1.800	4.652	0.543	0.556	0.034	0.111	0.256	0.378	0.026	0.062	1.197	0.242	0.061	1.513
3619	chr17	79815488	79832689	+	0	NA	Intergenic	Intergenic	4762	NM_001185077	396	Hs.159161	NM_004309	ENSG00000141522	ARHGDIA	GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1	Rho GDP dissociation inhibitor alpha	protein-coding	3.883	3.075	3.968	3.431	5.531	3.122	5.763	2.212	0.431	3.647	1.595	4.168	6.140	3.578	0.137	4.457	4.937	3.114	4.979	5.470	4.683	4.716	2.682	6.555	6.388	nan	4.245	4.492	7.056	5.762	6.564	2.674	5.041	3.866	4.295	3.927	4.578	nan	1.431	1.488	2.676	0.856	1.995	5.763	4.168	0.941	3.354	1.012	1.801
6296	chr5	67726613	67756481	+	0	NA	Intergenic	Intergenic	153151	NM_001242466	5295	Hs.132225	NM_181504	ENSG00000145675	PIK3R1	AGM7|GRB1|IMD36|p85|p85-ALPHA	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.667	1.855	0.561	0.148	0.232	0.129	0.283	0.226	0.086	0.071	0.077	0.076	0.779	0.047	0.125	0.294	0.219	2.144	3.935	0.285	0.314	0.155	0.098	0.170	0.183	0.468	0.610	0.366	0.411	0.480	0.214	0.125	0.184	0.162	0.264	0.182	0.507	0.384	0.418	0.183	0.173	0.024	0.048	0.283	0.076	0.036	0.041	0.053	0.100
538	chr1	151161003	151173268	+	0	NA	Intergenic	AluJo|SINE|Alu	-3885	NM_001330689	8394	Hs.655131	NM_003557	ENSG00000143398	PIP5K1A	-	phosphatidylinositol-4-phosphate 5-kinase type 1 alpha	protein-coding	nan	nan	2.900	1.663	1.772	0.799	2.670	3.339	0.917	1.578	0.855	2.519	10.178	5.629	0.349	2.765	2.730	4.859	8.373	4.883	nan	5.269	1.552	6.868	7.267	2.141	2.944	3.390	5.635	3.153	2.513	4.344	6.882	2.911	3.356	2.570	4.771	1.870	0.992	0.989	2.506	0.474	1.103	2.670	2.519	0.644	2.714	2.479	1.210
5897	chr4	53727474	53738024	+	0	NA	3' UTR (NM_023940, exon 4 of 4)	3' UTR (NM_023940, exon 4 of 4)	4254	NM_023940	65997	Hs.8035	NM_023940	ENSG00000128045	RASL11B	-	RAS like family 11 member B	protein-coding	nan	0.768	2.138	2.401	0.336	0.250	0.608	0.475	0.076	0.727	0.493	0.921	4.067	0.227	0.066	0.946	1.023	0.736	1.358	2.875	2.250	2.029	0.635	0.975	1.021	2.277	3.254	3.483	3.251	1.093	1.129	0.728	1.860	1.001	0.860	0.497	0.805	3.771	1.947	5.795	1.119	0.344	0.736	0.608	0.921	0.202	0.837	0.468	0.294
4711	chr2	217460923	217473535	+	0	NA	intron (NR_110392, intron 1 of 3)	intron (NR_110392, intron 1 of 3)	4432	NR_110392	101928232	Hs.694592	NR_110392		LINC01280	-	long intergenic non-protein coding RNA 1280	ncRNA	nan	1.581	nan	0.932	5.232	2.803	1.417	1.111	0.243	0.782	0.382	1.280	0.920	0.060	0.097	0.455	0.857	0.566	1.449	3.338	3.140	2.206	0.862	0.242	0.246	0.460	0.776	2.776	nan	0.950	1.454	0.270	0.397	1.413	1.145	0.672	1.605	0.914	0.483	1.945	0.191	0.590	1.012	1.417	1.280	0.175	1.526	0.157	0.523
521	chr1	149898066	149900836	+	0	NA	intron (NM_005850, intron 1 of 5)	intron (NM_005850, intron 1 of 5)	693	NM_005850	10262	Hs.516160	NM_005850	ENSG00000143368	SF3B4	AFD1|Hsh49|SAP49|SF3b49	splicing factor 3b subunit 4	protein-coding	6.465	5.295	5.848	5.235	4.972	2.485	5.151	3.638	0.348	3.360	1.633	5.278	22.845	4.372	0.240	5.694	5.788	11.097	15.501	9.238	8.882	9.086	4.276	9.650	9.887	6.040	6.756	7.495	10.913	6.528	5.969	6.102	10.368	4.072	5.054	6.664	9.524	3.880	1.400	4.808	6.401	0.964	2.777	5.151	5.278	1.595	6.317	4.339	3.237
6353	chr5	87891420	87909643	+	0	NA	intron (NR_015436, intron 3 of 4)	intron (NR_015436, intron 3 of 4)	62226	NR_030741	407047		NR_030741	ENSG00000245526	MIR9-2	MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2	microRNA 9-2	ncRNA	0.692	1.194	0.659	0.087	0.168	0.114	0.044	0.112	0.080	0.051	0.113	0.020	0.170	0.035	0.120	0.212	0.183	0.218	0.369	0.115	0.203	0.082	0.043	0.133	0.096	0.405	0.562	0.209	0.204	0.379	0.146	0.083	0.116	4.477	5.755	0.160	nan	0.279	0.385	0.022	0.098	1.271	0.071	0.044	0.020		0.056	0.038	0.021
2164	chr12	118117272	118137307	+	0	NA	intron (NM_173598, intron 4 of 19)	MER58A|DNA|hAT-Charlie	278739	NM_173598	283455	Hs.375836	NM_173598	ENSG00000171435	KSR2	-	kinase suppressor of ras 2	protein-coding	nan	nan	0.541	0.118	0.370	0.184	0.463	0.045	0.153	0.210	0.198	0.398	1.079	0.062	0.119	0.357	0.259	0.225	0.444	nan	nan	nan	0.314	0.365	0.376	0.132	0.259	nan	nan	0.454	0.233	0.206	0.226	0.269	0.774	0.112	0.151	nan	1.074	3.745	0.282	0.095	0.090	0.463	0.398	0.092	0.386	0.055	0.048
1912	chr12	32349767	32372806	+	0	NA	intron (NM_001003398, intron 1 of 8)	MIR|SINE|MIR	101101	NM_001714	636	Hs.505202	NM_001714	ENSG00000151746	BICD1	BICD	BICD cargo adaptor 1	protein-coding	1.433	nan	1.446	0.226	0.321	0.165	0.275	0.103	0.101	0.184	0.189	0.213	0.700	0.090	0.134	0.392	0.320	0.269	0.365	0.523	0.657	0.566	0.189	0.450	0.455	4.348	4.218	0.264	0.260	1.682	1.022	0.183	0.258	1.051	1.120	0.694	2.613	0.620	0.511	0.116	0.771	0.228	0.240	0.275	0.213	0.241	0.088	0.060	0.590
3293	chr17	16309573	16313285	+	0	NA	Intergenic	Intergenic	-7427	NM_016113	51393	Hs.279746	NM_016113	ENSG00000187688	TRPV2	VRL|VRL-1|VRL1	transient receptor potential cation channel subfamily V member 2	protein-coding	2.200	1.525	1.178	0.475	1.088	0.733	1.095	0.662	0.260	0.170	0.046	0.782	5.724	2.989	0.083	0.652	2.049	0.604	nan	1.519	1.523	3.011	0.860	0.528	0.688	0.607	0.956	1.623	2.470	nan	4.135	0.512	0.715	0.567	0.235	1.896	4.584	0.469	0.414	0.828	0.500	0.137	0.234	1.095	0.782	0.159	7.314	0.081	0.626
986	chr10	1092014	1104037	+	0	NA	intron (NM_001317955, intron 2 of 5)	AluSg|SINE|Alu	-2719	NR_134301	3422	Hs.283652	NM_004508	ENSG00000067064	IDI1	IPP1|IPPI1	isopentenyl-diphosphate delta isomerase 1	protein-coding	1.810	2.264	3.153	2.410	3.388	2.071	2.161	3.775	0.635	1.193	0.613	3.693	6.052	1.747	0.124	3.548	3.715	3.749	5.785	3.356	2.910	6.298	4.687	4.164	4.394	2.631	2.931	2.252	3.812	1.794	1.775	1.674	3.433	1.444	1.930	1.927	2.617	0.603	0.341	1.319	2.802	0.385	1.280	2.161	3.693	0.470	1.217	0.970	1.008
786	chr1	203005425	203024700	+	0	NA	exon (NM_001304332, exon 8 of 29)	exon (NM_001304332, exon 8 of 29)	19413	NM_001304331	8497	Hs.153648	NM_015053	ENSG00000143847	PPFIA4	-	PTPRF interacting protein alpha 4	protein-coding	1.367	0.921	1.264	0.133	0.464	0.249	0.475	0.153	0.144	0.237	0.146	0.422	0.827	0.090	0.085	0.646	0.596	0.449	0.720	3.301	3.554	1.148	0.311	nan	nan	0.627	1.233	1.383	1.603	0.619	0.356	0.241	0.261	0.289	0.265	0.797	1.402	1.335	0.831	0.575	0.318	0.040	0.201	0.475	0.422	0.227	0.727	0.026	0.346
4148	chr19	55784654	55796593	+	0	NA	intron (NM_012267, intron 2 of 7)	intron (NM_012267, intron 2 of 7)	602	NM_001297600	23640	Hs.53066	NM_012267	ENSG00000133265	HSPBP1	FES1	HSPA (Hsp70) binding protein 1	protein-coding	2.369	1.181	1.806	1.055	2.986	1.493	1.912	0.475	0.149	1.062	0.566	2.472	2.104	1.502	0.081	2.139	2.667	1.191	1.336	3.334	2.867	3.292	1.554	1.333	1.305	1.654	2.192	2.198	3.232	2.585	2.377	1.363	1.850	1.289	0.929	1.515	2.633	3.062	1.821	3.241	1.357	0.321	0.832	1.912	2.472	0.715	1.522	0.662	0.573
4082	chr19	42652711	42665240	+	0	NA	Intergenic	Intergenic	-21310	NR_036208	100422980		NR_036208	ENSG00000266226	MIR4323	-	microRNA 4323	ncRNA	1.669	1.398	1.284	1.601	2.150	1.123	5.847	0.049	0.038	0.220	0.129	2.295	1.532	0.078	0.067	0.293	0.577	0.126	0.156	2.567	3.367	3.881	1.428	0.218	0.250	0.402	0.888	2.222	2.591	0.822	0.545	0.403	0.427	0.190	0.158	0.912	1.862	3.759	1.938	0.503	0.447	0.038	0.556	5.847	2.295	0.133	1.315	0.056	0.137
201	chr1	36019127	36024630	+	0	NA	intron (NM_024874, intron 1 of 20)	intron (NM_024874, intron 1 of 20)	1159	NM_024874	79932	Hs.456507	NM_024874	ENSG00000142687	KIAA0319L	AAVR	KIAA0319 like	protein-coding	4.233	nan	5.882	4.037	2.555	1.284	3.051	2.654	0.233	2.344	1.308	7.505	7.339	3.111	0.081	2.610	3.047	3.151	4.465	5.959	5.026	nan	1.905	5.768	5.937	3.417	5.325	7.526	10.176	nan	5.584	3.066	4.651	2.511	3.636	3.598	4.737	2.501	nan	3.107	2.005	0.815	1.536	3.051	7.505	1.206	1.973	1.272	1.506
6742	chr6	36772487	36808540	+	0	NA	intron (NM_001314017, intron 2 of 6)	MIRc|SINE|MIR	16707	NM_020939	57699	Hs.657869	NM_020939	ENSG00000124772	CPNE5	COPN5|CPN5	copine 5	protein-coding	nan	0.826	nan	0.226	0.442	0.191	1.215	0.260	0.184	0.135	0.181	0.308	0.951	0.218	0.087	0.636	0.760	0.284	nan	nan	0.871	1.074	0.353	0.501	0.521	0.639	1.084	0.681	1.021	0.687	0.420	0.397	0.496	0.399	0.461	0.528	1.095	0.853	0.605	2.388	0.801	0.082	0.183	1.215	0.308	0.193	0.072	0.129	0.373
719	chr1	184844691	184875400	+	0	NA	intron (NM_052966, intron 3 of 13)	intron (NM_052966, intron 3 of 13)	83673	NM_052966	116496	Hs.518662	NM_052966	ENSG00000135842	FAM129A	C1orf24|GIG39|NIBAN	family with sequence similarity 129 member A	protein-coding	nan	nan	1.036	0.157	0.295	0.185	0.248	0.773	0.251	0.086	0.173	0.224	0.558	0.096	0.113	0.617	0.399	5.274	5.240	0.489	nan	0.389	0.117	nan	0.382	1.131	1.572	0.759	0.649	0.378	0.202	0.450	0.639	0.096	0.149	0.327	nan	0.510	0.568	0.623	0.174	0.028	0.052	0.248	0.224	0.102	0.033	0.132	0.095
4645	chr2	191268688	191279561	+	0	NA	intron (NM_017694, intron 1 of 7)	intron (NM_017694, intron 1 of 7)	1043	NM_017694	54842	Hs.418581	NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding	2.391	nan	1.784	3.629	3.542	2.184	1.741	0.451	0.176	1.811	0.944	3.261	11.637	0.599	0.078	3.027	4.485	1.843	3.068	3.571	3.101	3.713	2.442	5.205	5.699	2.427	3.249	3.113	6.509	1.135	1.213	1.893	3.947	2.950	2.344	0.928	1.334	1.764	1.173	3.082	1.804	0.605	1.254	1.741	3.261	0.430	1.356	1.630	0.195
1529	chr11	76015992	76029246	+	0	NA	Intergenic	LTR16A|LTR|ERVL	69390	NM_004705	5612	Hs.503315	NM_004705	ENSG00000137492	THAP12	DAP4|P52rIPK|PRKRIR|THAP0	THAP domain containing 12	protein-coding	nan	0.771	0.545	0.695	0.282	0.170	0.116	0.095	0.073	0.106	0.126	0.247	5.860	0.140	0.105	0.560	0.389	0.246	0.311	1.021	1.261	0.566	0.227	0.733	0.955	0.379	0.699	0.526	0.731	0.562	0.395	0.390	0.418	0.219	0.251	0.191	0.322	1.375	0.795	4.835	0.116	0.044	0.030	0.116	0.247	0.043	0.110	0.060	0.075
7451	chr7	115927132	116047753	+	0	NA	Intergenic	L1MB3|LINE|L1	-60661	NR_130922	102724434	Hs.667624	NR_130921	ENSG00000237870	LOC102724434	-	uncharacterized LOC102724434	ncRNA	nan	0.571	0.648	0.093	0.161	0.098	0.087	0.819	0.177	0.112	0.169	0.082	0.301	6.336	0.285	0.478	0.354	0.254	0.467	0.199	0.238	0.118	0.083	0.297	0.314	0.497	0.825	0.205	0.237	0.372	0.159	0.265	0.448	0.084	0.107	0.163	0.246	0.532	0.701	0.037	0.123	0.016	0.025	0.087	0.082	0.017	0.051	0.192	0.070
1353	chr11	26606043	26622849	+	0	NA	intron (NM_031418, intron 14 of 26)	HERV17-int|LTR|ERV1	-20631	NM_001135091	143662	Hs.407152	NM_145650	ENSG00000169550	MUC15	MUC-15|PAS3|PASIII	mucin 15, cell surface associated	protein-coding	0.609	1.100	0.709	0.163	0.170	0.095	0.199	0.062	0.106	0.196	0.086	0.385	0.469	0.052	0.067	0.563	0.377	0.212	0.411	0.246	0.300	7.906	5.669	0.264	0.272	0.295	0.446	2.986	4.410	0.400	0.225	0.114	0.193	0.434	0.606	0.253	0.404	3.330	2.105	0.038	0.148	0.078	0.033	0.199	0.385	0.487	0.024	0.047	0.119
1742	chr11	132100455	132115607	+	0	NA	intron (NM_001144058, intron 3 of 7)	intron (NM_001144058, intron 3 of 7)	-46165	NR_046820	100874281		NR_046820		NTM-IT	NTM-IT3	NTM intronic transcript	ncRNA	0.464	nan	0.626	0.748	0.874	0.541	0.551	0.034	0.032	1.188	1.126	1.363	nan	0.050	0.078	0.477	0.430	0.123	0.181	2.293	2.598	1.379	0.596	0.217	0.193	0.162	0.263	0.975	1.679	0.268	0.129	0.186	0.299	1.581	1.396	0.133	0.152	3.197	1.475	0.168	0.323	0.326	0.094	0.551	1.363		0.047	0.052	0.106
2585	chr14	50412152	50440682	+	0	NA	Intergenic	AluSz|SINE|Alu	-6700	NR_106724	102464828		NR_106724	ENSG00000278038	MIR6076	hsa-mir-6076	microRNA 6076	ncRNA	nan	nan	1.319	0.829	1.154	0.658	1.821	1.033	0.216	0.369	0.287	1.152	6.018	0.081	0.142	0.385	0.314	0.407	0.862	1.011	1.165	1.573	0.414	0.484	0.502	0.437	0.603	3.372	3.003	0.948	0.666	0.357	0.579	3.607	3.493	0.431	1.087	nan	1.645	4.166	2.727	1.214	0.078	1.821	1.152	0.104	0.428	0.571	0.307
4404	chr2	74404329	74428054	+	0	NA	Intergenic	AluJb|SINE|Alu	-9499	NR_027405	10797	Hs.469030	NM_006636	ENSG00000065911	MTHFD2	NMDMC	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase	protein-coding	nan	nan	2.760	2.184	2.338	1.234	1.016	1.145	0.150	0.860	0.484	2.233	3.316	2.022	0.140	1.864	1.918	1.873	2.809	2.513	2.341	5.321	2.072	3.664	3.838	2.523	3.176	3.539	4.139	2.671	3.027	1.356	2.184	1.376	1.269	2.911	4.779	nan	0.961	1.050	0.779	0.213	1.477	1.016	2.233	0.468	1.062	0.678	1.543
4864	chr20	17205942	17210908	+	0	NA	intron (NM_001201529, intron 1 of 10)	intron (NM_001201529, intron 1 of 10)	828	NM_002594	5126	Hs.315186	NM_002594	ENSG00000125851	PCSK2	NEC 2|NEC-2|NEC2|PC2|SPC2	proprotein convertase subtilisin/kexin type 2	protein-coding	2.181	nan	2.947	7.889	2.787	1.974	1.948	0.109	0.066	2.201	1.640	7.507	15.549	0.022	0.062	0.449	0.238	0.095	0.321	10.561	8.932	11.319	4.281	0.095	0.045	3.830	5.122	3.425	5.035	2.156	2.260	0.111	0.187	6.972	5.944	3.162	5.280	3.510	1.760	2.393	0.448	2.626	1.275	1.948	7.507	0.450	5.137	0.020	1.571
6671	chr6	25358967	25372634	+	0	NA	intron (NM_001173977, intron 2 of 36)	AluSz6|SINE|Alu	86144	NM_001173977	55604	Hs.649550	NM_017640	ENSG00000079691	CARMIL1	CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5	capping protein regulator and myosin 1 linker 1	protein-coding	2.086	1.447	nan	1.262	0.789	0.586	0.392	0.974	0.129	0.423	0.204	0.850	nan	0.128	0.084	2.189	2.806	1.069	nan	0.499	0.418	nan	1.173	0.590	0.650	1.832	2.878	1.746	1.894	1.536	1.097	0.451	0.922	3.592	4.729	1.367	3.316	1.686	0.990	0.953	0.469	0.981	0.104	0.392	0.850	0.579	0.913	0.163	1.041
6773	chr6	43592496	43608790	+	0	NA	intron (NM_001003690, intron 1 of 3)	AluSq2|SINE|Alu	-2934	NM_014628	9587	Hs.122346	NM_014628	ENSG00000124688	MAD2L1BP	CMT2	MAD2L1 binding protein	protein-coding	3.638	3.056	2.093	4.452	2.628	1.368	3.260	3.300	0.553	1.968	0.795	3.969	6.900	2.456	0.146	2.610	3.012	2.440	3.631	3.589	3.297	8.229	4.789	4.140	4.192	2.233	2.629	6.191	nan	3.743	4.081	1.304	2.150	3.622	5.645	2.645	5.918	2.548	1.323	2.524	2.646	0.718	1.624	3.260	3.969	0.583	1.647	1.284	2.018
6562	chr5	175279823	175301647	+	0	NA	intron (NM_006650, intron 2 of 4)	L3|LINE|CR1	-7766	NM_001008220	10814	Hs.193235	NM_006650	ENSG00000145920	CPLX2	921-L|CPX-2|CPX2|Hfb1	complexin 2	protein-coding	1.036	1.585	1.010	0.153	0.327	0.206	0.463	0.080	0.060	1.040	0.476	1.202	3.343	0.040	0.104	0.283	0.416	0.129	nan	0.848	0.886	1.940	0.230	0.076	0.084	0.820	nan	0.460	0.486	1.567	1.399	0.303	0.414	4.274	6.257	0.293	0.459	1.015	0.717	1.058	0.246	1.110	0.494	0.463	1.202	0.424	2.988	0.143	0.113
7716	chr8	63514634	63520533	+	0	NA	intron (NR_130764, intron 3 of 6)	MLT1J|LTR|ERVL-MaLR	356082	NM_001304533	286183	Hs.654662	NM_173688	ENSG00000185942	NKAIN3	FAM77D	Sodium/potassium transporting ATPase interacting 3	protein-coding	0.961	0.769	0.849	0.149	0.198	0.108	0.752	0.052	0.081	0.106	0.156	0.040	0.538		0.113	0.235	0.113	0.244	0.177	0.534	0.829	0.564	0.259	0.055	0.047	0.609	nan	0.157	0.109	nan	1.119	0.142	0.312	0.511	0.423	0.103	0.291	0.898	0.736	0.060	0.015	0.145	0.040	0.752	0.040	4.315	0.059	0.033	0.593
97	chr1	15724776	15759466	+	0	NA	intron (NM_024329, intron 1 of 3)	AluSz|SINE|Alu	5730	NM_024329	79180	Hs.465374	NM_024329	ENSG00000142634	EFHD2	SWS1	EF-hand domain family member D2	protein-coding	1.400	2.233	nan	7.094	1.418	0.679	0.715	0.231	0.097	0.498	0.246	0.945	4.247	0.389	0.115	0.894	1.011	0.767	1.036	3.475	3.417	2.601	0.665	1.157	nan	0.647	nan	7.269	7.614	nan	0.755	0.603	0.934	0.712	0.611	1.066	2.596	2.176	1.112	2.179	1.388	0.132	0.124	0.715	0.945	0.407	0.949	0.426	0.543
3645	chr18	3698900	3734013	+	0	NA	intron (NM_001308390, intron 4 of 10)	AluJr|SINE|Alu	112721	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA	0.980	1.285	0.983	0.573	0.791	0.390	0.303	0.134	0.090	0.698	0.294	9.160	nan	0.430	0.151	0.433	0.356	0.279	0.409	3.388	4.405	nan	0.529	0.518	0.577	0.505	nan	2.739	2.427	nan	0.486	0.192	0.334	2.023	1.576	0.213	nan	nan	0.602	4.701	2.431	0.297	0.246	0.303	9.160	0.113	0.095	0.166	0.156
7776	chr8	85155080	85188164	+	0	NA	intron (NM_001100391, intron 1 of 8)	MIRc|SINE|MIR	74522	NM_001100391	138046	Hs.121663	NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding	1.254	nan	nan	1.800	0.942	0.503	0.606	0.122	0.082	0.436	0.147	0.561	4.419	0.026	0.086	0.918	0.585	0.958	0.433	1.357	1.804	2.307	1.363	3.635	3.568	2.577	2.686	nan	4.602	0.654	0.411	1.266	2.255	1.839	1.705	1.279	3.215	1.088	0.605	5.551	1.018	0.524	0.599	0.606	0.561	0.071	0.742	1.746	1.261
8260	chr9	124102501	124114584	+	0	NA	intron (NM_198194, intron 2 of 2)	AluSx1|SINE|Alu	24040	NR_073037	2040	Hs.253903	NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding	nan	nan	1.231	1.419	0.282	0.216	5.006	1.345	0.107	0.299	0.156	2.931	nan	0.063	0.074	0.378	0.422	1.052	1.568	4.169	4.778	0.185	0.081	0.829	0.880	0.435	nan	1.230	0.740	0.834	0.458	0.198	0.206	0.105	0.176	0.272	0.758	nan	0.788	2.007	0.663	0.015	1.332	5.006	2.931	0.751	0.033	0.042	0.368
774	chr1	201499844	201542263	+	0	NA	Intergenic	Intergenic	32021	NR_026667	376693	Hs.605989	NR_026667		RPS10P7	RPS10_2_147	ribosomal protein S10 pseudogene 7	pseudo	1.904	1.608	1.360	0.544	2.403	1.319	1.141	0.546	0.164	0.585	0.323	1.388	1.534	0.143	0.119	1.359	2.106	1.563	2.092	3.104	2.445	4.337	1.412	nan	nan	1.953	2.814	2.355	2.909	0.912	0.646	0.456	0.829	1.362	1.877	0.408	0.749	1.827	1.073	0.554	0.701	0.305	0.451	1.141	1.388	0.436	0.939	0.464	0.126
5101	chr21	35295689	35323124	+	0	NA	intron (NR_038883, intron 1 of 2)	intron (NR_038883, intron 1 of 2)	5888	NR_134558	100506334	Hs.532855	NM_207472	ENSG00000237945	LINC00649	-	long intergenic non-protein coding RNA 649	ncRNA	1.222	1.229	2.991	0.777	1.111	0.590	1.382	0.786	0.103	0.288	0.308	1.301	5.552	0.811	0.090	1.697	2.411	1.691	1.666	3.064	3.177	1.147	0.427	3.663	3.892	0.873	1.151	1.629	2.548	0.954	0.664	0.832	1.388	0.602	0.752	0.550	0.795	nan	0.905	0.873	1.520	0.090	0.194	1.382	1.301	0.194	0.654	0.742	0.228
5602	chr3	149769669	149812627	+	0	NA	Intergenic	Intergenic	-23082	NR_136187	105374313	Hs.151216	NR_136187		LOC105374313	-	uncharacterized LOC105374313	ncRNA	1.514	nan	nan	0.218	0.591	0.329	0.314	0.763	0.168	0.234	0.224	0.212	2.999	0.055	0.089	0.425	0.296	0.448	0.439	0.497	0.535	nan	0.557	0.311	0.303	1.447	nan	0.823	nan	nan	0.452	0.430	0.576	0.353	0.399	0.548	0.930	1.000	0.733	2.694	0.792	0.067	0.146	0.314	0.212	0.083	0.122	0.134	0.278
4306	chr2	42586065	42600257	+	0	NA	intron (NM_001319036, intron 1 of 3)	intron (NM_001319036, intron 1 of 3)	2936	NM_001319037	9167	Hs.339639	NM_004718	ENSG00000115944	COX7A2L	COX7AR|COX7RP|EB1|SIG81	cytochrome c oxidase subunit 7A2 like	protein-coding	3.493	nan	2.217	1.687	1.204	0.511	1.079	0.731	0.067	1.625	0.961	1.321	2.759	1.068	0.159	1.525	1.603	1.636	2.418	nan	2.274	3.783	1.336	4.306	4.655	2.139	2.789	3.287	3.727	3.233	2.695	1.373	2.210	1.345	1.499	1.983	nan	nan	1.523	0.689	1.229	0.364	0.437	1.079	1.321	0.898	1.888	0.490	0.554
6224	chr5	32582518	32588057	+	0	NA	promoter-TSS (NM_006713)	promoter-TSS (NM_006713)	-318	NM_006713	10923	Hs.229641	NM_006713	ENSG00000113387	SUB1	P15|PC4|p14	SUB1 homolog, transcriptional regulator	protein-coding	3.377	3.655	nan	5.489	2.349	1.635	2.140	8.354	2.020	3.573	1.927	8.147	7.291	2.841	0.107	3.340	4.002	3.589	4.940	5.726	4.918	3.576	2.153	7.410	7.105	3.703	4.581	4.098	6.266	5.849	5.928	3.085	4.925	3.083	3.343	2.137	2.120	2.774	1.611	0.804	2.680	0.849	0.991	2.140	8.147	1.243	3.261	2.012	0.513
1341	chr11	20567113	20595363	+	0	NA	Intergenic	HAL1|LINE|L1	-39708	NM_001318369	9152	Hs.136557	NM_004211	ENSG00000165970	SLC6A5	GLYT-2|GLYT2|HKPX3|NET1	solute carrier family 6 member 5	protein-coding	0.695	1.077	0.779	0.153	0.260	0.153	0.109	0.059	0.119	0.066	0.101	0.202	0.349	0.050	0.075	0.431	0.314	0.207	0.237	0.401	0.429	0.362	0.159	0.188	0.183	0.737	0.933	0.244	0.270	0.505	0.279	0.202	0.262	0.119	0.185	0.839	3.240	0.596	0.601	0.059	0.185	0.055	0.056	0.109	0.202	0.010	0.051	0.049	0.690
2684	chr14	77486358	77535422	+	0	NA	intron (NR_110554, intron 1 of 3)	intron (NR_110554, intron 1 of 3)	3498	NR_110554	283575	Hs.651736	NR_110554	ENSG00000246548	LOC283575	-	uncharacterized LOC283575	ncRNA	4.923	3.507	3.275	4.231	5.254	3.073	5.377	3.701	0.530	1.093	0.531	4.563	12.738	4.997	0.180	2.108	3.147	2.085	4.677	6.340	5.470	2.734	1.035	2.421	2.485	1.152	1.757	5.400	nan	4.497	3.831	2.239	3.881	3.854	3.700	0.663	1.463	4.124	nan	8.167	6.913	1.257	2.652	5.377	4.563	1.323	2.718	3.476	0.453
4123	chr19	48819625	48855267	+	0	NA	exon (NM_001303538, exon 6 of 7)	exon (NM_001303538, exon 6 of 7)	8190	NM_001313905	2014	Hs.9999	NM_001425	ENSG00000142227	EMP3	YMP	epithelial membrane protein 3	protein-coding	2.104	1.354	3.653	1.179	2.867	1.484	0.946	0.929	0.253	0.572	0.398	1.206	2.441	1.376	0.127	1.081	1.526	1.067	1.368	2.835	2.272	3.694	1.303	1.997	2.108	3.148	4.119	2.066	2.793	3.581	3.218	0.897	1.321	2.925	2.938	1.506	2.878	2.232	1.051	1.800	2.877	1.256	0.715	0.946	1.206	1.250	0.843	1.436	0.749
5098	chr21	34660977	34698460	+	0	NA	Intergenic	LTR47B|LTR|ERVL	-17496	NM_000629	3454	Hs.529400	NM_000629	ENSG00000142166	IFNAR1	AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC	interferon alpha and beta receptor subunit 1	protein-coding	1.386	1.029	1.561	0.969	0.815	0.436	0.547	0.339	0.064	0.373	0.218	0.902	2.305	0.353	0.085	0.931	1.046	0.973	1.286	1.977	1.644	1.136	0.427	1.460	1.479	0.687	1.065	3.559	3.045	1.722	1.491	0.591	0.914	1.071	1.038	0.886	1.245	nan	1.206	0.559	0.925	0.221	0.346	0.547	0.902	0.332	0.895	0.316	0.474
6929	chr6	121751661	121767129	+	0	NA	intron (NM_000165, intron 1 of 1)	intron (NM_000165, intron 1 of 1)	2672	NM_000165	2697	Hs.74471	NM_000165	ENSG00000152661	GJA1	AVSD3|CMDR|CX43|EKVP|GJAL|HLHS1|HSS|ODDD|PPKCA	gap junction protein alpha 1	protein-coding	3.548	0.690	0.805	0.114	0.353	0.217	0.414	0.077	0.083	0.071	0.101	0.062	0.203	5.331	0.192	0.281	0.164	0.333	0.495	0.202	0.235	0.362	0.182	0.291	0.258	0.077	0.176	0.227	0.285	0.537	0.323	0.072	0.152	3.778	2.601	0.182	0.447	0.393	0.289	0.018	0.115	0.497	0.011	0.414	0.062	0.069	0.052	0.025	0.159
3424	chr17	43356336	43381055	+	0	NA	intron (NM_003954, intron 1 of 15)	intron (NM_003954, intron 1 of 15)	25735	NM_003954	9020	Hs.404183	NM_003954	ENSG00000006062	MAP3K14	FTDCR1B|HS|HSNIK|NIK	mitogen-activated protein kinase kinase kinase 14	protein-coding	1.369	2.108	nan	0.449	0.678	0.312	0.326	0.829	0.366	0.368	0.264	0.213	1.336	0.561	0.126	0.594	0.912	0.425	0.962	0.912	nan	0.676	0.298	0.727	0.800	1.168	1.757	1.566	nan	4.455	4.869	0.386	0.473	0.180	0.267	1.275	4.230	1.236	0.838	0.315	0.501	0.070	0.529	0.326	0.213	0.944	0.296	0.132	1.795
4799	chr20	340965	364377	+	0	NA	Intergenic	Intergenic	-8602	NM_021158	57761	Hs.516826	NM_021158	ENSG00000101255	TRIB3	C20orf97|NIPK|SINK|SKIP3|TRB3	tribbles pseudokinase 3	protein-coding	1.521	2.102	1.296	1.939	2.631	1.344	0.901	1.734	0.232	0.629	0.250	1.149	3.091	1.576	0.119	2.164	3.646	0.565	1.006	1.041	1.012	3.175	0.771	2.974	2.921	0.828	1.206	1.686	1.241	1.850	2.003	3.527	3.756	0.487	1.220	1.216	3.926	0.460	0.369	1.123	2.030	0.152	1.592	0.901	1.149	0.726	2.145	1.505	0.953
893	chr1	225997387	226022628	+	0	NA	intron (NM_001291163, intron 1 of 8)	intron (NM_001291163, intron 1 of 8)	-2995	NM_000120	2052	Hs.89649	NM_000120	ENSG00000143819	EPHX1	EPHX|EPOX|HYL1|MEH	epoxide hydrolase 1	protein-coding	1.766	nan	2.840	1.865	3.909	2.276	2.496	1.199	0.483	1.516	0.800	3.941	2.134	0.453	0.139	0.747	1.059	0.915	1.493	2.681	nan	3.235	1.129	1.016	1.024	0.563	1.051	2.713	3.978	0.877	1.003	0.365	0.517	1.215	1.197	0.672	1.203	2.080	1.201	1.665	0.596	0.241	1.791	2.496	3.941	0.528	0.884	0.216	0.250
6414	chr5	118650735	118665947	+	0	NA	intron (NM_001286815, intron 2 of 2)	L2b|LINE|L2	-10529	NM_001286814	25816	Hs.618488	NM_014350	ENSG00000145779	TNFAIP8	GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2	TNF alpha induced protein 8	protein-coding	1.587	1.755	1.187	0.362	0.685	0.346	0.472	0.827	0.176	0.400	0.339	0.039	2.160	0.174	0.115	0.248	0.143	0.480	1.685	0.562	0.696	1.678	0.399	0.143	0.155	2.010	nan	1.107	1.342	1.345	1.081	0.120	0.200	3.546	5.239	0.332	1.359	1.896	0.978	0.762	0.146	1.236	0.400	0.472	0.039	0.400	0.206	0.020	0.356
3979	chr19	13707925	13772318	+	0	NA	Intergenic	Intergenic	-102453	NM_001320565	81576	Hs.24998	NM_030818	ENSG00000104957	CCDC130	-	coiled-coil domain containing 130	protein-coding	1.874	2.345	1.876	3.257	3.576	1.882	1.492	0.135	0.160	1.970	1.195	4.509	4.010	0.065	0.067	0.209	0.155	0.178	0.258	5.216	5.606	7.953	3.496	0.176	0.174	0.289	0.537	8.549	8.636	2.691	2.245	0.154	0.140	3.480	4.216	0.402	0.989	3.691	1.520	1.265	0.575	1.250	0.292	1.492	4.509	0.580	1.519	0.194	0.086
6714	chr6	33081960	33094469	+	0	NA	intron (NR_001435, intron 2 of 4)	HUERS-P3-int|LTR|ERV1	7921	NR_001435	3116	Hs.665450	NR_001435	ENSG00000224557	HLA-DPB2	DP2B|DPB2|DPbeta2|HLA-DP2B	major histocompatibility complex, class II, DP beta 2 (pseudogene)	pseudo	nan	0.745	nan	0.080	0.248	0.100	0.108	0.134	0.052	0.076	0.059	0.196	0.238	0.070	0.150	6.447	7.989	4.081	nan	nan	0.362	0.396	0.163	11.849	12.676	0.201	0.357	0.327	0.365	0.445	0.172	5.069	5.818	0.080	0.138	0.379	1.053	0.471	0.425	0.044	0.050	0.038		0.108	0.196	0.023	0.081	3.492	0.127
3959	chr19	8266164	8282473	+	0	NA	5' UTR (NM_024552, exon 1 of 12)	5' UTR (NM_024552, exon 1 of 12)	101	NM_024552	79603	Hs.515111	NM_024552	ENSG00000090661	CERS4	LASS4|Trh1	ceramide synthase 4	protein-coding	1.194	2.239	2.760	4.120	1.959	1.044	0.345	0.069	0.132	0.830	0.332	1.808	5.211	0.521	0.093	0.503	0.708	0.680	0.918	3.256	3.262	1.209	0.373	0.179	0.129	0.630	1.099	7.606	nan	1.363	1.316	0.471	0.773	0.654	0.384	0.628	1.236	2.279	0.903	3.900	1.235	0.098	0.031	0.345	1.808	0.317	0.372	0.303	0.265
6047	chr4	153584283	153590972	+	0	NA	intron (NM_152680, intron 1 of 6)	intron (NM_152680, intron 1 of 6)	13690	NM_152680	201799	Hs.518900	NM_152680	ENSG00000170006	TMEM154	-	transmembrane protein 154	protein-coding	nan	0.966	0.799	0.327	0.315	0.167	0.126	0.068	0.024	0.128	0.028	0.260	0.163	0.016	0.072	0.332	0.140	0.333	0.350	0.245	0.360	0.156	0.036	0.177	0.140	0.076	0.214	0.270	0.257	0.540	0.514	0.214	0.314	0.162	0.288	0.178	0.337	0.358	0.373		0.053	0.028	4.862	0.126	0.260	0.028	0.057	0.073	0.092
5210	chr22	24803874	24818601	+	0	NA	3' UTR (NM_001254732, exon 15 of 15)	3' UTR (NM_001254732, exon 15 of 15)	-8328	NM_001278500	135	Hs.197029	NM_000675	ENSG00000128271	ADORA2A	A2aR|ADORA2|RDC8	adenosine A2a receptor	protein-coding	0.630	nan	3.035	1.142	0.335	0.188	0.352	0.163	0.088	0.192	0.074	0.365	0.490	0.080	0.075	0.433	0.509	0.179	0.317	0.492	0.469	3.655	1.255	0.362	0.461	0.556	1.008	1.221	1.361	0.756	1.440	0.202	0.307	0.833	0.911	0.196	0.501	4.879	2.480	0.045	0.145	0.212	0.068	0.352	0.365	0.086	0.925	0.048	0.135
755	chr1	194441584	194450361	+	0	NA	Intergenic	Intergenic	1172097	NR_125789	101929184	Hs.146728	NR_125789	ENSG00000232077	LINC01031	TCONS_00000361	long intergenic non-protein coding RNA 1031	ncRNA	0.838	nan	0.953	0.152	0.182	0.127	0.402	0.130	0.117	0.107	0.167	0.082	0.258	0.087	0.157	0.485	0.246	0.416	0.754	0.280	0.430	0.152	0.096	0.324	0.446	5.397	nan	0.285	0.398	0.392	0.168	0.072	0.090	0.575	0.473	0.175	0.353	0.287	0.254	0.007	0.070	0.098	0.018	0.402	0.082	0.044	0.023	0.034	0.028
7976	chr8	142926164	142964567	+	0	NA	Intergenic	Intergenic	-77691	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA	1.164	0.746	nan	0.100	0.478	0.267	0.430	0.077	0.058	0.074	0.050	0.633	1.650	0.031	0.047	0.208	0.153	0.099	0.105	nan	3.590	nan	0.072	0.131	0.153	0.425	0.608	0.737	0.968	0.629	0.527	0.341	0.395	0.195	0.263	0.378	0.559	0.379	0.399	2.612	1.447	0.035	0.075	0.430	0.633	0.245	0.026	0.100	0.224
3942	chr19	3983488	3991163	+	0	NA	intron (NR_031672, intron 2 of 2)	AluSx1|SINE|Alu	-1864	NM_001961	1938	Hs.515070	NM_001961	ENSG00000167658	EEF2	EEF-2|EF-2|EF2|SCA26	eukaryotic translation elongation factor 2	protein-coding	2.977	3.235	5.738	2.993	5.069	2.753	3.068	1.658	0.370	1.928	1.057	3.712	11.213	3.273	0.125	4.792	5.409	4.616	5.986	7.953	6.224	5.426	2.326	6.681	6.965	3.979	4.903	7.761	nan	7.509	8.384	2.236	3.590	5.958	5.477	4.027	4.238	4.695	2.312	3.509	7.166	1.033	1.736	3.068	3.712	1.147	1.757	3.160	1.550
5394	chr3	66522334	66551875	+	0	NA	intron (NM_015541, intron 1 of 18)	intron (NM_015541, intron 1 of 18)	13741	NM_015541	26018	Hs.518055	NM_015541	ENSG00000144749	LRIG1	LIG-1|LIG1	leucine rich repeats and immunoglobulin like domains 1	protein-coding	1.289	nan	2.310	1.506	1.186	0.708	0.341	0.590	0.049	0.627	0.431	2.148	2.406	0.092	0.087	0.303	0.331	1.247	1.483	1.445	1.347	1.560	0.430	0.179	0.183	0.989	1.237	3.174	3.320	1.514	1.420	0.841	1.532	1.735	2.143	0.550	nan	1.639	1.008	0.115	0.907	0.583	0.502	0.341	2.148	0.386	1.776	1.073	0.325
8075	chr9	17648930	17664454	+	0	NA	intron (NM_003026, intron 1 of 8)	intron (NM_003026, intron 1 of 8)	77740	NM_003026	6456	Hs.75149	NM_003026	ENSG00000107295	SH3GL2	CNSA2|EEN-B1|SH3D2A|SH3P4	SH3 domain containing GRB2 like 2, endophilin A1	protein-coding	nan	nan	1.239	0.244	0.571	0.309	0.102	0.111	0.062	0.121	0.147	0.145	0.434	0.014	0.080	0.205	0.115	0.165	0.275	0.481	0.643	0.692	0.236	0.085	0.126	2.707	3.423	0.415	0.399	1.870	1.494	0.210	0.337	0.228	0.337	0.471	1.143	0.924	0.974	0.069	0.127	0.021	0.108	0.102	0.145	0.037	0.019	0.038	0.471
7545	chr7	152156085	152162849	+	0	NA	Intergenic	Intergenic	-1742	NR_027387	100128822	Hs.647112	NR_027387	ENSG00000261455	LINC01003	-	long intergenic non-protein coding RNA 1003	ncRNA	4.178	3.009	nan	3.086	3.227	2.093	4.845	2.635	0.423	2.290	1.311	4.650	5.878	2.909	0.167	4.364	5.368	3.198	5.089	4.964	3.856	5.141	2.516	4.535	4.885	2.773	3.169	3.920	6.497	5.003	5.680	4.619	7.811	7.476	7.917	5.452	5.221	4.532	2.468	4.787	5.438	2.141	1.979	4.845	4.650	1.191	2.070	3.356	0.808
2268	chr13	36043170	36109397	+	0	NA	intron (NM_001204197, intron 1 of 17)	L2b|LINE|L2	25397	NM_001204197	26960	Hs.491172	NM_015678	ENSG00000172915	NBEA	BCL8B|LYST2	neurobeachin	protein-coding	1.314	1.026	1.099	0.138	0.175	0.068	0.073	0.089	0.070	0.139	0.127	0.321	0.203	0.041	0.094	0.831	0.808	0.225	0.258	0.495	0.524	1.408	0.530	0.166	0.169	1.965	1.917	0.292	0.397	0.627	0.374	0.232	0.360	0.539	0.442	3.549	6.266	0.266	0.219	0.026	0.251	0.141	1.797	0.073	0.321	0.161	0.052	0.094	1.705
6409	chr5	113223386	113249915	+	0	NA	Intergenic	Intergenic	387291	NM_022828	64848	Hs.231942	NM_022828	ENSG00000047188	YTHDC2	CAHL	YTH domain containing 2	protein-coding	0.641	0.785	1.608	0.187	0.144	0.054	0.111	0.076	0.043	0.118	0.099	0.045	0.168	0.025	0.100	0.147	0.101	0.209	0.300	0.149	0.152	7.605	1.883	0.127	0.137	0.657	nan	0.133	0.106	0.381	0.204	0.066	0.135	1.027	0.484	0.158	0.401	1.074	0.693	0.014	0.057	0.086	0.012	0.111	0.045		0.031	0.015	0.047
6448	chr5	132572629	132593349	+	0	NA	intron (NM_015082, intron 7 of 15)	intron (NM_015082, intron 7 of 15)	180409	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA	1.014	1.300	nan	0.358	1.574	0.802	0.506	0.165	0.038	0.657	0.269	0.718	0.624	0.042	0.101	0.267	0.387	0.307	0.739	0.568	0.640	2.153	0.650	0.542	0.538	0.170	0.363	1.797	2.262	0.348	0.243	0.321	0.312	2.923	3.213	0.284	0.399	1.632	0.904	0.400	0.128	0.455	0.081	0.506	0.718	0.152	2.057	0.112	0.197
6379	chr5	95900096	95919665	+	0	NA	intron (NR_130776, intron 4 of 4)	AluYb9|SINE|Alu	-87861	NM_001042442	831	Hs.436186	NM_001750	ENSG00000153113	CAST	BS-17|PLACK	calpastatin	protein-coding	nan	1.481	0.622	0.080	0.266	0.164	2.597	0.138	0.148	0.072	0.143	0.110	0.455	0.044	0.133	0.174	0.115	0.136	0.280	0.534	0.560	0.176	0.071	0.268	0.203	1.197	1.628	0.413	0.345	0.490	0.189	0.077	0.167	0.272	0.778	0.164	nan	0.556	0.561	0.525	0.159	0.024	0.045	2.597	0.110	0.059	0.602	0.020	0.081
5746	chr3	183759989	183775602	+	0	NA	Intergenic	Intergenic	-3040	NM_130770	170572	Hs.632579	NM_130770	ENSG00000178084	HTR3C	-	5-hydroxytryptamine receptor 3C	protein-coding	0.972	0.925	1.329	0.583	0.964	0.478	0.526	0.120	0.165	1.415	0.697	0.761	0.509	0.056	0.048	0.597	0.567	0.289	0.297	1.066	1.318	3.786	1.768	0.151	0.127	0.176	0.385	1.315	1.024	0.678	0.287	0.265	0.312	1.093	1.503	0.256	0.393	2.284	1.219	0.039	0.661	0.189	0.223	0.526	0.761	0.048	0.077	0.094	0.159
7244	chr7	32067219	32074497	+	0	NA	intron (NM_001322059, intron 3 of 17)	LTR37A|LTR|ERV1	39616	NM_001191057	5137	Hs.143821	NM_005020	ENSG00000154678	PDE1C	Hcam3|cam-PDE 1C|hCam-3	phosphodiesterase 1C	protein-coding	1.467	0.968	1.768	0.179	0.114	0.044	0.247	0.147	0.065	0.087	0.121	1.483	0.376	0.015	0.108	0.687	0.391	8.876	6.179	1.061	nan	0.158	0.091	6.035	6.451	1.095	nan	nan	nan	1.026	0.930	0.113	0.242	0.068	0.132	0.714	nan	0.251	0.394		0.110	0.013	0.314	0.247	1.483	0.094	0.084	0.068	0.715
411	chr1	95742997	95749067	+	0	NA	Intergenic	MamRep1161|DNA|TcMar	37787	NR_135588	100996630	Hs.662270	NR_135588	ENSG00000228504	LINC01760	-	long intergenic non-protein coding RNA 1760	ncRNA	nan	nan	0.950	0.096	0.256	0.158	0.085	0.057	0.159	0.129	0.055	0.059	0.225	0.054	0.176	2.940	4.057	7.054	2.824	0.260	nan	0.150	0.120	1.086	1.111	0.574	nan	0.396	0.348	nan	0.179	0.794	1.984	0.069	0.067	0.277	0.745	0.610	0.451	0.073	0.089	0.031	0.025	0.085	0.059	0.017	0.017	0.830	0.122
6583	chr6	2983641	3000000	+	0	NA	TTS (NR_026856)	TTS (NR_026856)	3619	NR_026856	401232	Hs.720158	NM_207495		LINC01011	-	long intergenic non-protein coding RNA 1011	ncRNA	2.777	2.283	2.412	2.285	2.082	1.175	3.209	1.707	0.332	0.773	0.507	3.320	1.992	3.439	0.121	3.869	5.162	2.772	4.144	3.825	3.143	2.044	0.791	3.446	3.641	1.351	1.607	3.146	5.068	1.568	1.976	2.328	3.826	1.282	0.995	2.217	2.681	1.240	0.880	1.352	3.588	0.144	0.952	3.209	3.320	0.480	1.489	1.955	0.573
6370	chr5	93325318	93330790	+	0	NA	intron (NR_028080, intron 3 of 8)	L1MEc|LINE|L1	119350	NM_001163417	83989	Hs.600086	NM_032042	ENSG00000113391	FAM172A	C5orf21	family with sequence similarity 172 member A	protein-coding	nan	1.684	0.875	0.259	0.347	0.089	0.280	0.568	0.148	0.221	0.045		0.780	0.020	0.123	0.303	0.269	0.214	0.368	0.208	0.360	3.892	1.355	0.195	0.175	0.942	1.101	2.513	2.225	0.973	0.510	0.086	0.176	5.655	11.255	0.509	nan	0.356	0.306	0.090	0.895	1.714	0.143	0.280		0.071	0.208	0.036	0.274
2016	chr12	69444477	69471273	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-100855	NM_001874	1368	Hs.654387	NM_001874	ENSG00000135678	CPM	-	carboxypeptidase M	protein-coding	0.575	0.693	0.514	0.230	0.412	0.225	0.407	0.423	0.132	0.135	0.126	0.192	0.547	0.068	0.084	0.351	0.220	4.410	12.161	0.474	nan	0.152	0.073	0.402	0.431	0.238	0.402	0.920	0.922	0.534	0.390	0.165	0.229	0.058	0.117	0.279	0.516	0.849	0.729	0.031	0.273	0.018	0.091	0.407	0.192	0.036	0.197	0.081	0.051
942	chr1	236442706	236468335	+	0	NA	Intergenic	AluY|SINE|Alu	-10181	NM_019891	56605	Hs.558519	NM_019891	ENSG00000086619	ERO1B	ERO1LB|Ero1beta	endoplasmic reticulum oxidoreductase 1 beta	protein-coding	1.637	1.536	2.435	1.168	1.302	0.790	0.362	0.146	0.119	2.607	1.532	1.339	3.129	0.191	0.120	0.683	0.797	1.677	1.934	2.292	1.928	nan	0.631	0.545	0.571	0.170	0.264	nan	1.804	0.559	0.430	0.190	0.282	3.533	3.500	0.329	0.464	nan	1.398	0.785	0.653	0.739	0.093	0.362	1.339	0.148	0.510	0.063	0.077
1376	chr11	33911452	33921026	+	0	NA	Intergenic	Intergenic	-2403	NM_005574	4005	Hs.34560	NM_005574	ENSG00000135363	LMO2	RBTN2|RBTNL1|RHOM2|TTG2	LIM domain only 2	protein-coding	1.542	2.769	nan	1.489	4.275	2.096	2.738	0.340	0.083	1.884	0.536	0.625	5.196	0.120	0.078	0.593	0.721	0.252	0.393	1.756	1.829	0.416	0.185	0.343	0.261	2.387	3.308	2.153	2.390	1.453	1.126	1.293	1.965	1.986	1.382	0.983	nan	3.055	1.672	7.033	2.798	0.366	1.799	2.738	0.625	1.980	0.275	0.972	0.506
6634	chr6	17468257	17497458	+	0	NA	intron (NM_006366, intron 4 of 12)	MLT1C|LTR|ERVL-MaLR	28639	NR_110855	101928491	Hs.622876	NR_110855		LOC101928491	-	uncharacterized LOC101928491	ncRNA	1.091	nan	1.729	1.328	0.416	0.225	4.470	1.583	0.305	0.477	0.284	1.610	0.581	0.067	0.080	0.433	0.396	0.285	0.474	3.225	2.961	3.770	1.818	0.964	1.028	2.955	3.515	0.186	0.152	2.232	1.704	0.628	1.012	1.690	2.113	0.182	0.273	1.477	1.006	0.033	1.511	0.308	1.745	4.470	1.610	0.722	0.690	0.740	0.077
6270	chr5	55960146	55976060	+	0	NA	Intergenic	MIR3|SINE|MIR	-66044	NM_001287053	101928448	Hs.208052	NM_001287053	ENSG00000225940	C5orf67	-	chromosome 5 open reading frame 67	protein-coding	nan	nan	1.275	0.537	0.343	0.232	0.264	0.094	0.092	0.267	0.130	0.135	1.407	0.042	0.100	0.259	0.115	3.740	8.726	1.115	0.886	nan	0.849	0.266	0.252	0.185	0.285	0.493	0.366	nan	0.163	0.057	0.075	0.293	0.194	0.149	0.380	0.989	0.788	0.049	0.173	0.042	0.798	0.264	0.135	0.098	0.019		0.145
2369	chr13	91785620	91816732	+	0	NA	intron (NR_047004, intron 2 of 3)	AluSx|SINE|Alu	-57483	NR_104057	101930747	Hs.112745	NR_104057		LINC00380	-	long intergenic non-protein coding RNA 380	ncRNA	0.782	1.565	1.030	0.090	0.199	0.093	0.317	0.106	0.104	0.369	0.235	0.476	0.318	0.038	0.075	0.547	0.323	0.266	0.565	0.352	0.431	9.656	6.273	0.115	0.107	0.334	0.404	0.623	0.538	0.650	0.240	0.141	0.231	0.973	0.881	0.388	0.763	0.705	0.360	0.043	0.080	0.147	0.054	0.317	0.476	0.018	0.878	0.041	0.191
7482	chr7	130029589	130085776	+	0	NA	intron (NM_001257158, intron 2 of 9)	intron (NM_001257158, intron 2 of 9)	23369	NM_001257159	95681	Hs.368315	NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding	nan	nan	nan	0.687	4.094	2.279	1.179	0.727	0.215	2.453	1.256	4.295	1.954	0.443	0.190	1.066	0.973	0.683	0.908	3.196	3.596	nan	1.861	0.867	0.968	1.280	nan	1.397	1.728	nan	2.395	0.671	0.809	3.940	4.817	0.950	1.297	2.885	nan	7.101	7.141	1.561	0.829	1.179	4.295	0.569	0.412	0.235	0.166
2816	chr15	21088974	21099444	+	0	NA	Intergenic	L1MA8|LINE|L1	-22228	NR_110752	102724631	Hs.722659	NM_207355	ENSG00000278522	POTEB3	POTE-15|POTEB	POTE ankyrin domain family member B3	protein-coding	nan	0.942	nan	0.144	0.319	0.187	0.123	0.089	0.112	0.074	0.054	0.023	0.418	0.010	0.084	0.823	0.357	5.515	2.205	0.172	0.159	0.226	0.120	0.581	0.389	0.321	0.335	0.216	0.194	nan	0.275	0.258	0.691	0.104	0.063	0.125	0.228	0.285	0.395	0.010	0.025	0.054	0.008	0.123	0.023	0.027		0.236	0.024
2802	chr14	105957511	105969235	+	0	NA	intron (NM_001134875, intron 5 of 7)	intron (NM_001134875, intron 5 of 7)	5787	NM_001134876	283643	Hs.720306	NM_173608	ENSG00000185347	C14orf80	-	chromosome 14 open reading frame 80	protein-coding	2.505	0.621	9.597	0.517	0.602	0.175	0.918	0.280	0.136	0.253	0.170	0.539	0.991	0.652	0.079	2.646	4.251	0.783	1.223	1.370	1.087	1.274	0.650	0.711	0.668	0.789	1.248	0.607	1.107	1.372	1.229	0.589	0.730	0.709	0.664	0.566	0.580	0.123	0.120	0.484	0.485	0.179	0.436	0.918	0.539	0.526	0.250	0.076	0.104
231	chr1	39449107	39466252	+	0	NA	intron (NM_001136275, intron 1 of 3)	intron (NM_001136275, intron 1 of 3)	763	NM_001136275	79647	Hs.293563	NM_024595	ENSG00000174574	AKIRIN1	C1orf108|STRF2	akirin 1	protein-coding	13.137	nan	1.473	2.804	1.084	0.409	0.797	0.797	0.245	0.704	0.520	2.164	2.424	1.845	0.201	0.874	0.833	1.421	1.534	2.089	2.128	nan	0.432	2.002	1.917	1.235	1.696	7.726	8.880	nan	1.243	1.071	1.932	0.545	0.504	1.459	3.269	29.422	18.536	0.787	0.676	0.116	0.453	0.797	2.164	0.327	0.600	0.623	0.941
6102	chr4	185296310	185325772	+	0	NA	intron (NM_002199, intron 8 of 8)	intron (NM_002199, intron 8 of 8)	-7581	NR_125933	102723766	Hs.432281	NR_125933	ENSG00000249096	LOC102723766	-	uncharacterized LOC102723766	ncRNA	nan	1.033	nan	0.178	0.304	0.190	1.594	1.379	0.104	0.144	0.085	0.679	0.996	0.037	0.064	0.735	0.614	4.249	5.811	1.116	1.026	0.533	0.106	0.203	0.206	0.071	0.142	0.845	0.992	0.307	0.178	1.247	1.649	0.334	0.490	0.149	0.257	0.599	0.491	0.531	1.423	0.052	0.318	1.594	0.679	0.049	0.097	1.415	0.101
551	chr1	153746845	153769382	+	0	NA	Intergenic	LTR38B|LTR|ERV1	-8310	NR_126565	343052	Hs.516530	NR_126565	ENSG00000231827	LOC343052	-	immunoglobulin superfamily DCC subclass member 3 pseudogene	pseudo	nan	nan	1.725	1.459	0.837	0.462	1.106	2.446	0.465	0.662	0.475	1.502	4.872	0.619	0.127	1.461	1.721	1.157	1.914	2.720	nan	2.163	0.835	0.891	0.968	1.076	1.556	2.721	3.457	1.136	0.989	1.333	1.946	1.346	1.163	0.940	1.304	1.972	1.004	0.931	1.679	0.244	0.622	1.106	1.502	0.315	4.117	0.628	0.331
4700	chr2	212253495	212288348	+	0	NA	intron (NM_005235, intron 25 of 27)	L2c|LINE|L2	788626	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA	nan	1.063	nan	0.502	0.460	0.215	0.163	0.081	0.065	0.462	0.287	0.432	0.325	0.053	0.109	0.662	0.604	0.433	0.550	0.320	0.391	2.425	0.952	0.276	0.326	0.484	0.701	0.695	nan	0.402	0.205	0.245	0.441	0.685	0.725	0.225	0.358	0.413	0.387	0.034	0.036	0.150	0.158	0.163	0.432	0.014	0.299	0.145	0.042
4720	chr2	219431966	219435294	+	0	NA	promoter-TSS (NM_020935)	promoter-TSS (NM_020935)	327	NM_001271634	9125	Hs.148767	NM_005444	ENSG00000144580	CNOT9	CAF40|CT129|RCD-1|RCD1|RQCD1	CCR4-NOT transcription complex subunit 9	protein-coding	nan	5.282	nan	8.408	9.316	4.620	7.042	4.655	0.368	4.284	1.809	6.928	18.139	6.323	0.167	10.320	9.078	12.845	17.514	9.960	9.172	9.189	6.150	19.201	19.501	6.937	8.352	12.809	19.718	13.424	12.751	5.503	11.287	5.388	8.064	11.000	10.197	3.955	2.017	6.301	4.151	1.146	3.217	7.042	6.928	2.309	3.916	2.671	2.854
5926	chr4	70057068	70071674	+	0	NA	intron (NR_136191, intron 2 of 5)	MER11A|LTR|ERVK	16078	NM_001073	10720	Hs.339811	NM_001073	ENSG00000213759	UGT2B11	-	UDP glucuronosyltransferase family 2 member B11	protein-coding	0.406	0.453	0.443	0.145	0.171	0.132	0.254	0.081	0.066	0.054	0.082	0.108	0.201	0.007	0.072	0.474	0.229	0.409	0.705	0.161	0.241	6.614	1.950	0.296	0.320	0.055	0.191	0.436	0.417	0.356	0.154	0.082	0.155	0.069	0.052	0.136	0.140	0.797	0.694	0.004	0.052	0.019	0.837	0.254	0.108	0.026	0.008	0.041	0.017
7365	chr7	83817289	83830855	+	0	NA	5' UTR (NM_006080, exon 1 of 17)	5' UTR (NM_006080, exon 1 of 17)	145	NM_006080	10371	Hs.252451	NM_006080	ENSG00000075213	SEMA3A	COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1	semaphorin 3A	protein-coding	1.313	1.118	0.938	0.150	0.190	0.155	0.676	2.410	0.213	0.219	0.344	0.071	0.215	0.590	0.190	1.159	1.908	0.238	0.425	0.738	0.713	0.137	0.094	0.603	0.559	3.009	3.776	0.522	0.591	1.806	1.216	0.669	1.601	0.755	0.765	1.857	nan	0.601	0.499	0.106	0.163	0.160	0.053	0.676	0.071	0.173	0.108	0.657	0.680
3753	chr18	39233350	39255751	+	0	NA	Intergenic	Intergenic	-143989	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA	nan	0.840	0.714	0.345	0.401	0.200	0.896	0.060	0.051	0.230	0.161	0.102	0.260	0.024	0.085	0.402	0.237	0.163	0.219	0.429	0.507	5.997	2.043	0.092	0.094	0.154	0.251	nan	0.526	0.311	0.149	0.080	0.187	1.656	0.870	0.155	0.244	3.248	1.882	0.052	0.067	0.271	0.204	0.896	0.102	0.022	1.919	0.022	0.055
2823	chr15	27476235	27526755	+	0	NA	intron (NM_033223, intron 3 of 9)	AluY|SINE|Alu	-95029	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	GABRG3-AS1	-	GABRG3 antisense RNA 1	ncRNA	nan	0.458	nan	0.198	0.500	0.270	0.081	0.059	0.051	0.138	0.149	0.339	1.938	0.043	0.081	0.304	0.323	0.358	0.545	0.448	0.480	0.353	0.116	0.159	0.163	0.355	0.554	3.156	2.921	nan	0.534	0.221	0.318	0.173	0.159	0.336	0.557	1.435	0.844	2.034	2.063	0.023	0.096	0.081	0.339	0.173	0.510	0.084	0.049
6647	chr6	19936171	19946636	+	0	NA	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	103802	NM_001546	3400	Hs.519601	NM_001546	ENSG00000172201	ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, HLH protein	protein-coding	1.054	nan	0.945	1.257	2.372	1.225	0.207	0.130	0.139	0.586	0.250	1.839	0.828	0.093	0.072	0.356	0.226	0.154	0.226	0.493	0.585	7.672	2.030	0.288	0.172	0.324	0.463	0.912	0.836	0.469	0.318	0.121	0.185	2.534	2.665	0.527	1.354	3.169	1.403	0.142	0.255	0.647	0.258	0.207	1.839	0.098	0.090	0.037	0.325
3894	chr18	72599418	72618668	+	0	NA	intron (NM_001146189, intron 6 of 6)	intron (NM_001146189, intron 6 of 6)	266124	NM_001146189	55628	Hs.536490	NM_017757	ENSG00000215421	ZNF407	-	zinc finger protein 407	protein-coding	nan	nan	0.904	0.264	1.085	0.583	1.058	0.088	0.092	3.213	1.389	1.731	4.680	0.056	0.080	0.596	0.546	0.838	0.793	0.984	nan	1.307	0.417	0.446	0.439	0.336	0.566	3.491	nan	0.535	0.204	1.620	2.652	2.293	3.371	0.245	0.444	1.362	0.788	0.043	0.262	0.339	0.260	1.058	1.731	0.025	0.943	2.806	0.090
4583	chr2	168129728	168134566	+	0	NA	Intergenic	Intergenic	88354	NM_001199145	129446	Hs.73680	NM_152381	ENSG00000163092	XIRP2	CMYA3	xin actin binding repeat containing 2	protein-coding	0.730	0.772	nan	0.056	0.271	0.100	0.156	0.122	0.004	0.065	0.085	0.019	0.334	0.044	0.039	0.383	0.211	9.641	3.216	0.209	0.278	0.093	0.038	0.363	0.348	0.078	0.165	0.247	0.288	0.323	0.182	0.146	0.286	0.017	0.021	0.515	1.309	0.403	0.412	0.047	0.019		0.017	0.156	0.019	0.020		0.041	0.129
7302	chr7	61779355	61803048	+	0	NA	Intergenic	HSATII|Satellite|Satellite	973233	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo	nan	nan	nan	0.602	1.367	0.704	0.647	0.728	5.631	0.529	1.640	0.334	2.063	0.297	1.801	1.648	0.637	0.392	0.445	1.133	1.833	0.571	0.417	0.861	0.701	1.291	1.840	1.160	1.346	2.274	0.575	0.569	1.275	0.425	0.826	0.875	1.497	0.485	0.728	0.136	0.386	0.290	0.191	0.647	0.334	0.119	0.231	0.372	0.349
6995	chr6	137266385	137325216	+	0	NA	Intergenic	AluSz|SINE|Alu	18568	NR_027994	100294720	Hs.520412	NR_027994	ENSG00000225391	NHEG1	-	neuroblastoma highly expressed 1	ncRNA	1.040	2.032	2.739	2.497	2.479	1.282	0.495	0.087	0.085	0.862	0.413	1.246	1.960	0.069	0.123	0.378	0.335	0.242	0.368	0.485	0.524	nan	6.565	0.248	0.257	0.801	1.057	1.367	1.423	0.880	0.668	0.194	0.265	2.243	2.565	0.264	nan	1.892	0.925	0.040	0.115	0.542	0.585	0.495	1.246	0.076	1.091	0.074	0.164
1782	chr12	5042682	5054637	+	0	NA	Intergenic	Intergenic	29586	NM_000217	3736	Hs.416139	NM_000217	ENSG00000111262	KCNA1	AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1	potassium voltage-gated channel subfamily A member 1	protein-coding	0.817	nan	nan	1.475	1.826	0.858	1.167	0.055	0.013	2.380	1.137	2.506	3.603	0.063	0.149	0.220	0.086	0.115	0.096	nan	1.318	5.812	3.398	0.147	0.194	0.881	1.325	0.135	0.171	0.278	0.128	0.106	0.155	6.866	7.506	0.190	nan	1.722	0.841	0.023	1.100	2.383	0.220	1.167	2.506	0.008	0.009	0.036	0.073
7578	chr8	3740496	3754792	+	0	NA	intron (NM_033225, intron 5 of 69)	intron (NM_033225, intron 5 of 69)	1104684	NM_033225	64478	Hs.571466	NM_033225	ENSG00000183117	CSMD1	PPP1R24	CUB and Sushi multiple domains 1	protein-coding	0.439	0.610	0.429	0.061	4.103	2.025	0.192	0.094	0.045	9.902	5.315	0.058	0.070	0.038	0.130	0.369	0.240	0.154	0.263	0.663	0.672	0.199	0.106	0.206	0.216	0.120	0.118	1.023	0.827	nan	0.216	0.089	0.180	0.194	0.161	0.255	0.326	3.098	1.294	0.292	0.100	0.040		0.192	0.058		0.219	0.041	0.035
2698	chr14	78696424	78709221	+	0	NA	intron (NM_001330195, intron 1 of 20)	L1ME3A|LINE|L1	66106	NR_073547	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding	1.274	0.692	0.686	0.086	1.215	0.676	1.576	0.094	0.088	0.147	0.161	0.489	0.741	0.140	0.104	0.301	0.166	0.121	0.169	0.592	0.608	1.482	0.308	0.156	0.212	0.524	0.770	0.531	nan	0.851	0.548	0.129	0.159	1.703	1.357	0.244	0.572	3.301	nan	0.288	0.581	0.586	1.429	1.576	0.489	0.061	0.024	0.015	0.087
3403	chr17	39927802	39950224	+	0	NA	intron (NM_021991, intron 1 of 14)	intron (NM_021991, intron 1 of 14)	3951	NM_002230	3728	Hs.514174	NM_002230	ENSG00000173801	JUP	ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB	junction plakoglobin	protein-coding	nan	1.841	1.849	0.764	1.010	0.522	0.634	0.634	0.278	0.601	0.328	1.250	1.907	0.590	0.087	1.457	2.138	0.896	1.816	nan	1.511	2.177	0.644	2.339	2.513	0.259	0.520	4.288	4.349	nan	1.176	0.915	1.449	0.582	0.690	0.622	1.453	1.246	0.748	0.893	0.674	0.098	1.009	0.634	1.250	0.397	2.571	0.478	0.313
792	chr1	203442378	203451477	+	0	NA	intron (NM_002725, intron 1 of 2)	intron (NM_002725, intron 1 of 2)	2044	NM_201348	5549	Hs.632481	NM_002725	ENSG00000188783	PRELP	MST161|MSTP161|SLRR2A	proline and arginine rich end leucine rich repeat protein	protein-coding	2.012	1.283	3.987	0.242	0.663	0.390	1.195	0.157	0.230	0.433	0.283	1.001	0.963	0.118	0.187	0.732	1.121	0.450	0.881	1.294	1.388	1.921	0.658	nan	nan	5.135	5.787	1.218	1.379	0.523	0.309	0.322	0.488	1.855	1.087	0.510	1.596	1.450	0.876	0.028	0.528	0.845	0.141	1.195	1.001	0.457	0.034	0.088	0.235
6231	chr5	34408405	34415226	+	0	NA	Intergenic	Intergenic	-244618	NM_015577	26064	Hs.431400	NM_015577	ENSG00000039560	RAI14	NORPEG|RAI13	retinoic acid induced 14	protein-coding	1.057	1.434	nan	0.679	0.265	0.117	1.367	0.614	0.400	0.230	0.217	0.450	3.389	0.126	0.149	0.408	0.433	0.211	0.532	0.492	0.649	10.398	1.672	0.221	0.299	1.937	2.169	0.854	0.600	1.644	1.547	0.401	0.448	3.263	4.088	0.256	0.607	2.020	1.474	0.008	0.197	1.074	0.209	1.367	0.450	0.070	0.519	0.218	0.219
1248	chr10	126305444	126320739	+	0	NA	intron (NM_014661, intron 4 of 4)	intron (NM_014661, intron 4 of 4)	-79506	NR_120631	101927944	Hs.437448	NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA	nan	0.537	2.408	0.311	1.115	0.683	0.190	0.141	0.052	0.329	0.198	0.917	1.560	0.134	0.058	0.857	1.733	0.476	1.266	1.357	1.140	1.165	0.384	0.518	0.462	0.282	0.545	1.403	1.780	0.265	0.254	0.785	1.165	0.205	0.171	0.246	0.267	1.351	0.753	4.895	2.009	0.025	0.377	0.190	0.917	0.533	0.225	0.473	0.049
6368	chr5	93208698	93251595	+	0	NA	intron (NR_028080, intron 4 of 8)	intron (NR_028080, intron 4 of 8)	-152837	NM_153216	134187	Hs.678995	NM_153216	ENSG00000248483	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding	nan	8.440	0.791	0.129	0.934	0.425	7.579	0.178	0.045	0.268	0.173	0.006	0.427	0.585	0.085	0.229	0.153	0.184	0.245	0.522	0.489	4.044	2.314	0.125	0.129	0.569	0.771	0.403	0.434	0.500	0.182	0.096	0.142	12.593	17.140	0.217	nan	3.199	1.647	0.054	0.567	3.852	0.111	7.579	0.006	0.014	0.458	0.016	0.155
4727	chr2	221422018	221437291	+	0	NA	Intergenic	AluSx1|SINE|Alu	-658368	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	ncRNA	nan	0.863	0.674	0.713	0.662	0.286	0.342	0.118	0.127	0.236	0.194	1.220	nan	0.021	0.147	0.517	0.358	0.324	0.430	0.493	0.551	2.071	0.535	0.336	0.397	0.692	0.928	0.977	nan	0.339	0.171	0.285	0.600	0.478	0.399	0.353	nan	0.552	0.380	3.709	0.209	0.069	0.052	0.342	1.220	0.080	0.127	0.299	0.108
5076	chr21	24842358	24862632	+	0	NA	Intergenic	Intergenic	-95339	NR_040254	266917	Hs.145622	NR_040254	ENSG00000228592	D21S2088E	-	D21S2088E	ncRNA	0.883	0.878	0.747	0.056	0.432	0.239	0.314	0.059	0.024	0.371	0.217	0.041	0.415	0.032	0.086	0.332	0.212	0.163	0.258	0.302	0.403	2.257	1.207	0.063	0.052	0.643	0.886	0.287	0.264	0.623	0.347	0.110	0.141	5.411	4.439	0.896	nan	9.349	4.093	0.011	0.030	1.041	0.227	0.314	0.041	0.024	0.211	0.049	0.489
4205	chr2	8584163	8599983	+	0	NA	Intergenic	MIR3|SINE|MIR	-123524	NR_034135	339789	Hs.565619	NM_207358	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA	0.738	0.637	0.812	0.933	1.565	0.823	0.634	0.080	0.030	0.187	0.156	2.385	2.297	0.082	0.137	0.392	0.334	0.343	0.895	0.997	1.306	5.003	2.306	0.194	0.223	0.472	0.580	1.428	1.774	0.871	0.638	0.341	0.501	0.391	0.462	0.260	0.446	0.765	0.553	0.388	0.347	0.108	0.055	0.634	2.385	0.281	0.552	0.187	0.086
2462	chr13	113407568	113438431	+	0	NA	intron (NM_032189, intron 1 of 28)	intron (NM_032189, intron 1 of 28)	-13954	NR_046661	100874205	Hs.658692	NR_046661	ENSG00000232684	ATP11A-AS1	-	ATP11A antisense RNA 1	ncRNA	0.722	nan	0.739	0.684	0.419	0.256	2.116	0.053	0.047	0.473	0.324	0.914	0.989	0.132	0.071	3.062	3.845	1.710	1.435	0.921	0.844	2.038	1.083	0.315	0.327	0.098	0.173	1.353	1.616	0.267	0.205	1.128	1.388	1.110	1.304	0.138	0.169	0.463	0.267	3.031	0.461	0.166	0.265	2.116	0.914	0.072	0.137	0.512	0.044
924	chr1	233002024	233011182	+	0	NA	Intergenic	LTR12C|LTR|ERV1	65965	NM_019090	54627	Hs.160373	NM_019090	ENSG00000212916	MAP10	KIAA1383|MTR120	microtubule associated protein 10	protein-coding	0.932	2.793	1.764	0.301	0.307	0.209	1.878	0.654	0.301	0.206	0.204	0.118	0.714	0.048	0.119	0.420	0.393	2.053	9.914	0.366	0.506	nan	0.291	0.196	0.204	0.303	0.585	nan	0.493	0.233	0.198	0.104	0.124	0.247	0.396	0.244	0.446	nan	0.653	0.165	0.020	0.063	0.499	1.878	0.118	0.085	0.277	0.059	0.217
5010	chr20	53702713	53721294	+	0	NA	Intergenic	L1MC5|LINE|L1	-327578	NR_110629	102723578	Hs.446269	NR_110629	ENSG00000235166	LINC01440	-	long intergenic non-protein coding RNA 1440	ncRNA	0.593	0.986	0.473	0.071	0.167	0.148	0.147	0.140	0.121	0.159	0.146	0.063	0.267	0.012	0.142	0.684	nan	0.231	0.633	0.197	0.192	5.532	1.584	0.154	0.178	0.194	0.331	0.167	0.220	0.347	0.098	0.154	0.202	0.255	0.234	0.137	0.209	0.146	0.253	0.012	0.181	0.035	0.022	0.147	0.063	0.041	0.070	0.019	0.040
4064	chr19	40948282	40951784	+	0	NA	intron (NM_203344, intron 1 of 1)	CpG	249	NM_203344	29946	Hs.515412	NM_013368	ENSG00000167565	SERTAD3	RBT1	SERTA domain containing 3	protein-coding	7.067	3.600	6.499	3.556	4.692	3.086	4.060	2.978	0.495	1.571	0.732	3.586	28.999	7.845	0.172	3.100	3.704	4.749	7.592	5.063	4.106	5.167	1.121	16.565	17.695	4.970	6.431	9.458	13.868	7.043	7.553	2.162	4.662	6.253	5.756	6.645	10.335	3.866	1.913	2.239	5.023	1.093	1.808	4.060	3.586	1.477	5.637	2.885	2.436
2301	chr13	50644722	50659506	+	0	NA	intron (NR_002612, intron 1 of 10)	intron (NR_002612, intron 1 of 10)	-4191	NR_109973	10301	Hs.591229	NM_005887	ENSG00000176124	DLEU1	BCMS|BCMS1|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6	deleted in lymphocytic leukemia 1	ncRNA	3.465	nan	nan	1.932	1.632	0.705	0.909	2.834	0.239	1.200	0.773	2.789	3.484	1.513	0.103	4.427	3.763	1.968	3.055	6.721	6.518	nan	2.372	5.676	5.843	2.788	3.512	2.355	4.051	8.085	6.985	2.786	4.893	3.038	3.358	7.661	nan	0.730	0.301	2.083	2.714	0.632	1.190	0.909	2.789	0.704	0.777	1.715	2.019
4162	chr19	59082969	59088320	+	0	NA	promoter-TSS (NM_003422)	promoter-TSS (NM_003422)	-702	NM_001267033	7593	Hs.399810	NM_003422	ENSG00000099326	MZF1	MZF-1|MZF1B|ZFP98|ZNF42|ZSCAN6	myeloid zinc finger 1	protein-coding	5.251	3.368	4.421	5.385	9.713	5.116	4.821	2.537	0.464	2.222	0.820	4.370	10.193	5.421	0.284	7.007	8.718	3.257	5.790	9.166	8.283	13.462	9.256	6.310	6.971	6.208	8.256	9.844	13.157	8.292	8.676	2.278	3.708	7.023	6.198	7.307	8.615	5.582	3.420	4.561	6.665	1.296	3.109	4.821	4.370	2.110	2.707	1.637	2.411
2481	chr14	21731491	21749331	+	0	NA	Intergenic	AluJb|SINE|Alu	-2773	NM_031314	3183	Hs.508848	NM_004500	ENSG00000092199	HNRNPC	C1|C2|HNRNP|HNRPC|SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	protein-coding	nan	1.472	2.060	2.110	2.071	1.091	1.219	1.594	0.243	0.565	0.449	1.275	2.647	1.274	0.149	1.485	1.308	2.459	3.342	2.758	2.887	2.559	1.771	5.016	5.571	3.064	3.849	2.822	nan	8.542	7.540	1.778	2.647	2.317	2.550	4.513	5.333	1.464	0.921	1.655	1.320	0.368	1.082	1.219	1.275	1.622	0.641	0.616	2.268
2027	chr12	76102244	76121597	+	0	NA	Intergenic	Intergenic	-206502	NM_007043	11103	Hs.645517	NM_007043	ENSG00000111615	KRR1	HRB2|RIP-1	KRR1, small subunit processome component homolog	protein-coding	nan	1.433	1.194	0.414	0.939	0.405	2.631	1.912	0.283	0.404	0.227	0.447	1.625	0.303	0.060	0.449	0.316	0.358	0.627	0.734	0.824	1.414	0.431	0.251	0.261	4.411	4.456	nan	0.924	1.020	0.765	0.161	0.304	1.150	1.709	0.467	0.953	nan	1.038	0.146	0.262	0.370	0.094	2.631	0.447	0.627	1.186	0.092	0.247
4045	chr19	38523655	38575770	+	0	NA	intron (NM_015073, intron 2 of 21)	AluJb|SINE|Alu	151851	NM_015073	23094	Hs.655502	NM_015073	ENSG00000105738	SIPA1L3	CTRCT45|SPAL3|SPAR3	signal induced proliferation associated 1 like 3	protein-coding	1.916	1.440	4.008	3.490	0.559	0.295	0.299	0.195	0.133	0.538	0.294	1.017	2.424	0.112	0.141	0.402	0.683	0.374	0.667	1.050	0.948	4.159	1.244	1.096	1.149	0.644	1.139	4.505	4.514	nan	3.937	0.440	0.541	1.188	1.636	1.296	4.029	1.787	0.983	1.075	1.762	0.360	0.362	0.299	1.017	0.662	2.603	0.123	1.742
3922	chr19	247560	257520	+	0	NA	Intergenic	THE1C|LTR|ERVL-MaLR	38629	NM_177543	8612	Hs.465506	NM_003712	ENSG00000141934	PLPP2	LPP2|PAP-2c|PAP2-g|PPAP2C	phospholipid phosphatase 2	protein-coding	0.929	0.937	0.928	0.166	0.370	0.210	0.104	0.112	0.097	0.394	0.318	0.169	0.350	0.077	0.104	0.468	0.400	0.352	0.551	0.362	0.578	1.410	0.466	0.374	0.325	0.290	0.480	0.467	nan	0.797	0.304	0.167	0.231	0.153	0.230	0.218	0.515	3.833	1.526	0.043	0.212	0.038	0.056	0.104	0.169	0.093	0.093	0.020	0.126
8204	chr9	93873854	93883302	+	0	NA	Intergenic	Intergenic	-2766	NR_135306	100129347	Hs.522287	NR_135306	ENSG00000229694	LINC00484	C9orf73	long intergenic non-protein coding RNA 484	ncRNA	0.759	nan	0.858	0.775	0.293	0.140	0.589	0.046	0.017	0.101	0.090	0.282	2.048	0.023	0.074	0.138	0.170	0.738	nan	2.174	1.828	0.310	0.130	0.324	0.375	0.098	0.173	3.361	2.943	2.189	2.553	0.151	0.231	0.169	0.149	0.172	0.213	0.941	0.659	2.372	5.228		0.046	0.589	0.282	0.020	0.107	0.085	0.090
1366	chr11	31828240	31839575	+	0	NA	promoter-TSS (NM_001310158)	promoter-TSS (NM_001310158)	-17	NM_001310158	5080	Hs.270303	NM_000280	ENSG00000007372	PAX6	AN|AN2|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding	2.565	0.704	nan	1.084	0.632	0.383	1.416	1.274	0.087	1.044	0.496	0.210	1.044	1.196	0.111	0.743	0.649	5.223	6.323	0.870	0.719	1.624	0.713	0.415	0.327	5.353	7.537	0.111	0.090	0.761	0.465	0.414	0.637	2.719	2.166	0.202	nan	0.967	0.760	0.580	0.102	0.438	2.059	1.416	0.210	1.345	0.009	0.113	0.032
7797	chr8	95251082	95256392	+	0	NA	Intergenic	Intergenic	20810	NM_181702	2669	Hs.654463	NM_005261	ENSG00000164949	GEM	KIR	GTP binding protein overexpressed in skeletal muscle	protein-coding	nan	1.171	3.598	0.401	1.285	0.424	1.981	0.379	0.120	0.295	0.294	0.781	2.410	0.082	0.034	0.629	0.726	0.421	nan	0.960	1.466	0.580	0.148	0.410	0.325	3.456	3.688	0.802	1.353	0.907	0.828	0.179	0.486	12.947	13.017	0.336	0.338	1.107	0.795	0.189	0.033	3.605	0.044	1.981	0.781	0.987	3.365	0.169	0.116
1255	chr10	129677828	129694430	+	0	NA	intron (NM_152311, intron 1 of 2)	intron (NM_152311, intron 1 of 2)	5082	NM_152311	119467	Hs.242014	NM_152311	ENSG00000180745	CLRN3	TMEM12|USH3AL1	clarin 3	protein-coding	nan	0.543	1.140	0.026	0.239	0.142	0.100	0.095	0.069	0.048	0.054	0.029	0.184	0.052	0.071	0.446	0.384	0.087	0.120	0.072	0.155	0.116	0.065	0.110	0.105	0.105	0.122	0.165	0.149	0.174	0.064	3.041	4.684	0.033	0.028	0.138	0.151	0.329	0.318	0.010	0.038	0.006	0.028	0.100	0.029	0.012	0.036	4.893	0.030
2660	chr14	68541804	68738147	+	0	NA	intron (NM_001321809, intron 7 of 11)	intron (NM_001321809, intron 7 of 11)	349666	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding	nan	nan	0.931	0.318	0.383	0.198	0.566	1.504	0.228	0.105	0.112	0.332	1.303	5.170	0.203	0.298	0.172	0.510	2.064	0.518	0.623	0.578	0.161	nan	0.487	0.520	0.832	0.526	nan	0.659	0.324	0.185	0.283	0.727	0.694	0.315	0.719	1.396	0.974	0.997	0.194	0.192	0.155	0.566	0.332	0.059	0.074	0.066	0.094
7264	chr7	41134516	41157245	+	0	NA	intron (NR_110832, intron 1 of 5)	L1PA16|LINE|L1	4678	NR_110832	101928773	Hs.382363	NR_110832	ENSG00000224017	LINC01449	-	long intergenic non-protein coding RNA 1449	ncRNA	0.887	1.134	nan	0.062	0.260	0.120	0.091	0.150	0.119	0.083	0.136	0.031	0.258	0.054	0.173	0.353	0.231	1.310	5.844	0.185	0.264	0.129	0.099	0.333	0.332	0.178	0.323	0.123	0.168	0.368	0.213	0.104	0.142	0.179	0.398	0.273	0.507	0.285	0.288	0.022	0.063	0.051	0.087	0.091	0.031	0.051	0.134	0.039	0.119
6916	chr6	118226517	118232042	+	0	NA	intron (NM_001029858, intron 1 of 7)	CpG	590	NM_001029858	222553	Hs.654841	NM_001029858	ENSG00000196376	SLC35F1	C6orf169|dJ230I3.1	solute carrier family 35 member F1	protein-coding	nan	1.530	nan	1.575	0.348	0.199	1.273	0.144	0.088	0.424	0.241	0.143	5.512	0.177	0.092	2.498	2.914	0.402	0.419	1.824	nan	nan	0.178	0.835	0.752	0.394	nan	1.963	3.776	2.860	4.093	0.968	2.444	0.079	0.045	0.261	nan	0.155	0.264	9.949	0.613	0.016	0.073	1.273	0.143	0.052	0.383	0.325	0.044
6976	chr6	134565830	134641773	+	0	NA	intron (NM_001143676, intron 1 of 13)	AluSz|SINE|Alu	35395	NM_001143676	6446	Hs.510078	NM_005627	ENSG00000118515	SGK1	SGK	serum/glucocorticoid regulated kinase 1	protein-coding	0.765	0.981	1.089	0.295	0.316	0.207	0.491	0.371	0.108	0.068	0.076	0.176	0.730	4.076	0.217	0.396	0.288	0.310	0.759	0.532	0.589	nan	0.334	0.257	0.272	0.424	0.664	0.347	0.350	0.617	0.263	0.144	0.256	0.102	0.107	0.309	nan	0.366	0.337	0.216	0.097	0.017	0.171	0.491	0.176	0.093	0.102	0.040	0.083
3548	chr17	72957900	72969046	+	0	NA	intron (NM_030630, intron 1 of 18)	AluSg|SINE|Alu	-3311	NR_110878	102723641		NR_110878	ENSG00000263586	HID1-AS1	-	HID1 antisense RNA 1	ncRNA	2.809	1.620	6.701	1.395	0.821	0.488	0.294	0.096	0.029	0.490	0.258	1.131	2.442	0.148	0.062	1.277	2.236	0.982	1.485	1.666	1.531	2.083	0.816	0.501	0.550	nan	1.295	2.331	3.263	1.120	0.860	0.712	1.148	0.468	0.499	0.456	0.839	nan	0.570	0.211	0.526	0.093	0.841	0.294	1.131	0.331	1.545	0.181	0.132
5893	chr4	49633150	49637904	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	646868	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding	18.507	21.768	19.088	6.928	10.142	5.995	8.517	2.810	18.849	4.196	10.407	2.610	12.818	2.554	10.025	11.299	4.738	4.882	5.797	10.282	16.403	5.124	3.754	7.153	7.017	10.631	14.246	7.217	6.788	15.220	3.926	4.000	7.037	3.932	7.674	5.172	8.952	5.492	8.093	0.962	7.409	2.745	2.099	8.517	2.610	2.247	1.930	1.647	3.078
3449	chr17	48679217	48690407	+	0	NA	intron (NM_001256331, intron 24 of 34)	AluJr|SINE|Alu	-27406	NM_001144070	8714	Hs.463421	NM_003786	ENSG00000108846	ABCC3	ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2	ATP binding cassette subfamily C member 3	protein-coding	0.963	0.695	nan	0.539	0.595	0.257	0.584	0.121	0.101	0.378	0.214	0.821	1.329	0.136	0.090	0.772	0.798	0.401	0.347	9.975	nan	1.667	0.660	0.600	0.663	0.308	0.614	1.291	nan	2.379	2.554	0.306	0.385	0.295	0.264	0.826	1.281	1.293	0.901	1.760	0.867	0.095	0.135	0.584	0.821	0.277	0.216	0.053	0.110
639	chr1	165250163	165260126	+	0	NA	intron (NM_177398, intron 3 of 8)	intron (NM_177398, intron 3 of 8)	70334	NM_001174069	4009	Hs.667312	NM_177398	ENSG00000162761	LMX1A	LMX1|LMX1.1	LIM homeobox transcription factor 1 alpha	protein-coding	2.387	nan	1.653	0.524	0.704	0.410	2.361	0.104	0.064	2.183	0.849	0.527	1.551	0.011	0.100	0.776	0.668	0.402	1.496	1.386	nan	0.840	0.208	0.136	0.143	0.565	1.041	1.406	nan	4.484	4.573	0.551	0.631	7.644	6.663	1.757	4.577	2.210	1.241	0.475	0.535	2.913	0.415	2.361	0.527	0.726	1.053	0.253	2.123
1505	chr11	71489176	71504869	+	0	NA	Intergenic	Intergenic	-1535	NM_018172	55199	Hs.567527	NM_018172	ENSG00000158483	FAM86C1	FAM86C	family with sequence similarity 86 member C1	protein-coding	nan	2.248	1.065	0.831	0.885	0.561	1.616	0.306	0.072	0.348	0.250	0.855	3.061	0.916	0.096	1.614	1.851	0.829	1.587	2.380	2.224	1.533	0.568	4.166	4.342	1.137	1.685	1.742	3.035	0.800	0.528	0.540	0.951	0.926	0.751	1.301	2.222	1.447	0.836	3.861	3.836	0.207	1.565	1.616	0.855	0.629	0.912	0.365	0.410
4746	chr2	230270482	230285699	+	0	NA	intron (NM_139072, intron 9 of 12)	AluSg|SINE|Alu	-142033	NM_001100818	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.931	nan	0.537	0.100	2.079	1.088	4.083	1.069	0.171	0.602	0.225	1.153	1.710	0.032	0.103	0.318	0.162	1.104	1.922	2.304	2.426	1.953	0.962	0.090	0.120	0.143	0.224	2.442	nan	0.360	0.208	0.099	0.132	0.088	0.158	0.185	0.283	1.229	0.802	1.313	0.972	0.019	0.084	4.083	1.153	0.026	1.668	0.020	0.047
2809	chr14	106318900	106334441	+	0	NA	promoter-TSS (NR_130468)	promoter-TSS (NR_130468)	-86	NR_130468	100616374		NR_130468	ENSG00000265612	MIR4539	-	microRNA 4539	ncRNA	1.607	0.394	1.187	0.064	0.181	0.093	0.115	0.066	0.092	0.071	0.053	0.054	0.247	0.056	0.069	0.327	0.350	0.119	0.090	0.207	0.265	0.624	0.128	0.048	0.062	0.111	0.308	0.108	0.173	1.803	2.399	0.426	0.297	0.750	1.206	0.035	0.075	0.042	0.099	5.843	0.068	0.117	0.048	0.115	0.054	1.755	0.013	0.038	0.024
4844	chr20	10195921	10202676	+	0	NA	promoter-TSS (NM_130811)	promoter-TSS (NM_130811)	-148	NM_003081	6616	Hs.167317	NM_003081	ENSG00000132639	SNAP25	CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2	synaptosome associated protein 25	protein-coding	5.754	nan	0.830	3.027	4.077	1.925	2.119	3.490	0.237	2.153	1.093	2.799	5.426	0.770	0.061	3.819	6.492	0.469	0.734	7.243	5.047	10.438	6.469	0.345	0.447	2.839	3.930	4.920	7.218	6.959	8.792	1.755	3.301	7.654	7.492	3.104	4.343	2.052	1.567	1.545	3.295	1.451	2.583	2.119	2.799	1.624	7.147	2.111	0.528
1227	chr10	120965391	120986803	+	0	NA	intron (NM_005308, intron 1 of 15)	AluJr|SINE|Alu	8900	NM_005308	2869	Hs.524625	NM_005308	ENSG00000198873	GRK5	GPRK5	G protein-coupled receptor kinase 5	protein-coding	nan	0.697	2.225	0.333	0.791	0.509	0.311	0.893	0.208	0.177	0.108	0.425	0.843	0.455	0.063	3.480	4.095	1.687	1.372	0.550	0.514	1.339	0.565	2.180	2.243	0.541	0.894	0.992	1.438	1.379	1.582	3.302	4.967	0.250	0.211	1.328	2.871	0.253	0.311	0.318	0.284	0.107	0.168	0.311	0.425	0.122	0.739	3.871	1.244
7766	chr8	80988260	80998175	+	0	NA	promoter-TSS (NM_001025252)	promoter-TSS (NM_001025252)	-151	NM_001287140	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding	1.636	nan	nan	2.239	1.959	1.021	0.721	0.479	0.065	0.536	0.340	2.423	2.611	0.108	0.083	0.548	0.638	0.767	1.703	0.852	1.013	5.644	1.938	0.283	0.323	0.727	1.084	nan	3.425	1.465	1.204	0.543	0.932	4.693	5.856	1.382	4.133	1.667	1.244	0.374	0.583	1.796	2.962	0.721	2.423	0.081	0.408	0.359	0.586
7584	chr8	6638242	6659309	+	0	NA	Intergenic	Intergenic	-44301	NR_045217	100652791	Hs.369771	NR_045217	ENSG00000245857	GS1-24F4.2	-	uncharacterized LOC100652791	ncRNA	0.561	0.933	0.569	0.287	4.045	1.946	3.317	0.451	0.103	0.170	0.155	5.405	0.743	0.052	0.090	0.335	0.232	0.246	0.327	2.153	2.482	1.755	0.451	0.326	0.364	0.177	0.393	0.884	0.719	nan	0.298	0.127	0.215	0.189	0.274	0.331	0.639	3.089	1.641	4.138	0.477	0.009	0.034	3.317	5.405	0.009	1.281	0.042	0.148
3478	chr17	57167460	57189617	+	0	NA	intron (NM_001320987, intron 1 of 22)	intron (NM_001320987, intron 1 of 22)	5744	NM_001320988	4591	Hs.579079	NM_015294	ENSG00000108395	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding	1.724	1.577	1.304	0.903	1.249	0.642	0.449	1.899	0.439	0.678	0.430	0.719	1.928	4.336	0.276	1.681	1.726	1.432	3.813	1.544	1.414	1.889	0.631	nan	2.920	1.322	1.645	nan	nan	1.869	1.852	0.681	1.421	1.370	1.496	1.594	2.204	1.124	0.585	0.275	0.595	0.267	0.470	0.449	0.719	0.179	0.362	0.302	0.427
6586	chr6	3329755	3368604	+	0	NA	intron (NM_001286456, intron 3 of 3)	intron (NM_001286456, intron 3 of 3)	90017	NM_001128592	389362	Hs.207069	NM_001128591	ENSG00000180822	PSMG4	C6orf86|PAC4|bA506K6.2	proteasome assembly chaperone 4	protein-coding	1.580	1.791	1.601	0.829	0.848	0.459	2.457	1.334	0.195	0.546	0.218	1.103	0.302	0.126	0.102	0.960	1.561	1.008	1.827	0.904	0.868	1.925	0.580	0.845	0.925	0.428	0.655	1.244	1.257	2.365	1.484	1.210	2.081	0.681	0.779	2.224	7.660	1.272	0.859	0.270	3.393	0.116	0.431	2.457	1.103	0.269	3.092	2.732	3.508
4032	chr19	36234844	36237952	+	0	NA	promoter-TSS (NM_144987)	promoter-TSS (NM_144987)	-55	NR_110173	199746	Hs.351558	NM_144987	ENSG00000161265	U2AF1L4	U2AF1-RS3|U2AF1L3|U2AF1L3V1|U2AF1RS3|U2af26	U2 small nuclear RNA auxiliary factor 1 like 4	protein-coding	5.939	2.795	5.021	9.883	4.874	3.024	3.768	2.573	0.054	1.653	0.836	3.908	26.110	4.633	0.132	2.707	3.729	4.071	6.003	5.791	5.344	6.836	3.652	12.948	13.713	4.210	5.142	6.986	10.111	nan	4.458	3.729	5.265	5.319	5.578	4.201	6.419	3.756	1.791	3.092	4.878	0.644	1.662	3.768	3.908	1.250	2.735	2.854	2.220
4877	chr20	20509131	20554997	+	0	NA	intron (NM_020343, intron 23 of 39)	intron (NM_020343, intron 23 of 39)	161202	NM_020343	57186	Hs.472285	NM_020343	ENSG00000188559	RALGAPA2	AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220	Ral GTPase activating protein catalytic alpha subunit 2	protein-coding	1.833	1.458	nan	0.425	3.504	2.045	0.285	0.149	0.077	0.751	0.505	1.675	0.678	0.047	0.067	1.165	1.372	0.296	0.540	1.296	1.578	4.108	1.087	0.283	0.286	3.964	4.610	2.008	2.246	5.160	4.321	0.445	0.716	3.236	5.075	0.480	1.134	1.780	0.891	0.137	0.313	1.674	0.581	0.285	1.675	1.987	0.613	0.239	0.341
6635	chr6	17703082	17707994	+	0	NA	promoter-TSS (NR_134616)	promoter-TSS (NR_134616)	-823	NR_134616	105374952	Hs.718703	NR_134616	ENSG00000272269	LOC105374952	-	uncharacterized LOC105374952	ncRNA	8.082	nan	5.168	5.401	4.339	2.645	4.924	6.958	0.712	2.029	1.171	6.279	9.558	3.360	0.106	6.527	6.489	7.616	10.297	8.832	8.082	8.005	5.657	22.416	22.671	5.128	7.088	6.527	12.071	10.053	10.967	4.244	6.682	9.855	10.145	10.527	8.202	3.355	2.025	2.307	2.786	1.391	4.045	4.924	6.279	1.969	2.509	1.450	2.715
2928	chr15	68901743	68935376	+	0	NA	intron (NM_001190456, intron 1 of 11)	intron (NM_001190456, intron 1 of 11)	-5768	NM_001190457	10391	Hs.551213	NM_006091	ENSG00000103647	CORO2B	CLIPINC	coronin 2B	protein-coding	1.262	1.697	nan	0.194	1.273	0.583	1.677	0.277	0.057	0.234	0.171	0.363	3.549	0.050	0.090	1.071	1.705	0.249	0.323	1.471	1.215	nan	0.366	0.290	0.322	1.210	1.541	0.558	0.702	2.577	2.218	0.936	1.369	0.729	0.835	1.085	2.397	0.761	0.552	1.081	1.195	0.141	0.379	1.677	0.363	0.491	0.336	0.817	0.813
2193	chr12	123746069	123757718	+	0	NA	intron (NR_073007, intron 1 of 3)	intron (NR_073007, intron 1 of 3)	908	NM_001270434	8099	Hs.433201	NM_004642	ENSG00000111328	CDK2AP1	DOC1|DORC1|ST19|doc-1|p12DOC-1	cyclin dependent kinase 2 associated protein 1	protein-coding	4.779	2.343	3.447	2.346	1.227	0.498	1.863	0.457	0.123	0.820	0.467	5.229	1.755	2.864	0.141	5.418	6.731	3.951	4.901	7.459	6.386	nan	0.809	3.321	3.137	4.441	6.525	2.631	4.595	5.760	6.348	2.239	5.040	5.867	4.606	1.767	1.583	4.201	2.704	5.809	0.876	1.760	3.206	1.863	5.229	0.477	2.941	1.396	0.455
3522	chr17	70650010	70721716	+	0	NA	intron (NM_001159770, intron 7 of 9)	L1MB5|LINE|L1	-49252	NR_033876	400619	Hs.447555	NR_033876	ENSG00000227036	LINC00511	LCAL5|onco-lncRNA-12	long intergenic non-protein coding RNA 511	ncRNA	0.970	1.153	0.766	0.510	0.419	0.224	0.712	0.162	0.137	0.449	0.274	0.277	3.169	0.053	0.104	1.307	2.238	2.367	4.901	0.406	0.526	3.110	1.003	0.477	0.494	nan	0.674	1.607	1.784	0.767	0.635	0.423	0.710	0.466	0.644	0.322	0.752	nan	0.726	0.373	0.352	0.100	0.109	0.712	0.277	0.203	0.173	0.201	0.135
2636	chr14	61185452	61192600	+	0	NA	intron (NM_017420, intron 1 of 2)	CpG	1826	NM_017420	51804	Hs.97849	NM_017420	ENSG00000100625	SIX4	AREC3	SIX homeobox 4	protein-coding	nan	nan	5.252	6.026	5.490	3.314	4.139	2.794	0.295	1.158	0.487	7.977	8.599	3.406	0.102	2.328	3.116	3.186	4.502	12.328	10.031	3.100	0.906	nan	8.643	1.827	2.395	5.034	nan	5.497	7.112	2.592	6.908	3.372	2.336	1.099	1.764	1.795	1.038	5.359	10.062	0.680	7.517	4.139	7.977	0.938	1.102	2.363	0.451
277	chr1	44437964	44449561	+	0	NA	3' UTR (NM_004047, exon 8 of 8)	3' UTR (NM_004047, exon 8 of 8)	-1112	NM_003780	8704	Hs.632403	NM_003780	ENSG00000117411	B4GALT2	B4Gal-T2|B4Gal-T3|beta4Gal-T2	beta-1,4-galactosyltransferase 2	protein-coding	nan	2.227	nan	1.902	2.253	1.299	1.946	1.398	0.195	1.747	1.108	3.960	3.972	1.520	0.088	2.346	2.882	2.494	3.194	4.987	4.712	2.753	0.814	2.208	2.045	2.335	nan	11.394	14.233	2.654	2.921	3.118	nan	1.561	1.559	2.528	3.509	2.349	1.178	1.991	2.729	0.289	0.999	1.946	3.960	0.794	1.301	1.558	1.278
1183	chr10	98259598	98274429	+	0	NA	intron (NM_012465, intron 1 of 20)	intron (NM_012465, intron 1 of 20)	6670	NM_012465	7093	Hs.154296	NM_012465	ENSG00000095587	TLL2	-	tolloid like 2	protein-coding	0.579	0.608	0.481	0.132	0.655	0.373	0.200	0.076	0.087	0.085	0.108	0.188	6.999	0.182	0.067	0.311	0.286	0.550	1.650	0.660	0.632	0.638	0.181	0.178	0.219	0.136	0.277	nan	5.277	0.367	0.311	0.357	0.926	0.092	0.150	0.135	0.270	0.535	0.441	1.688	1.944	0.039	0.021	0.200	0.188	0.065	0.245	0.220	0.049
2747	chr14	95621318	95625381	+	0	NA	promoter-TSS (NR_015415)	promoter-TSS (NR_015415)	410	NM_177438	23405	Hs.87889	NM_030621	ENSG00000100697	DICER1	DCR1|Dicer|Dicer1e|HERNA|K12H4.8-LIKE|MNG1|RMSE2	dicer 1, ribonuclease III	protein-coding	9.838	4.083	nan	7.893	6.298	3.596	8.788	4.234	0.592	2.549	1.460	8.085	12.628	3.681	0.092	6.917	7.423	7.341	11.948	13.323	13.997	5.000	3.114	22.167	23.227	4.849	5.819	7.755	14.753	12.287	13.630	7.269	13.916	7.023	6.201	6.318	4.619	nan	1.956	5.739	6.891	1.336	4.386	8.788	8.085	1.398	1.848	4.239	1.788
7556	chr7	155125635	155138542	+	0	NA	Intergenic	Intergenic	28540	NR_103545	338436	Hs.521326	NR_103545	ENSG00000204960	BLACE	-	B-cell acute lymphoblastic leukemia expressed	ncRNA	0.722	0.586	nan	0.095	0.381	0.248	1.108	0.188	0.112	0.182	0.207	4.468	1.368	0.417	0.162	0.369	0.464	0.370	0.675	2.436	2.259	0.668	0.188	0.169	0.149	0.277	0.417	0.217	0.240	0.961	0.773	0.703	0.915	0.501	0.490	0.548	0.698	1.460	1.118	0.966	0.961	0.045	0.380	1.108	4.468	0.379	0.117	0.174	0.229
2215	chr12	132567271	132570100	+	0	NA	promoter-TSS (NR_003290)	promoter-TSS (NR_003290)	-143	NR_003290	347918	Hs.122115	NM_182613	ENSG00000185684	EP400NL	-	EP400 N-terminal like	pseudo	3.442	2.378	2.398	3.163	1.934	1.312	1.527	1.349	0.225	1.673	0.964	2.635	4.370	2.565	0.058	3.125	2.460	2.445	3.212	3.774	3.267	3.469	1.368	8.515	8.195	2.535	3.689	nan	10.336	4.883	4.570	2.277	3.224	2.898	3.625	5.977	4.298	3.056	1.903	1.746	3.144	0.567	13.715	1.527	2.635	0.688	2.891	0.835	0.546
8107	chr9	33286550	33298959	+	0	NA	intron (NM_002504, intron 1 of 23)	intron (NM_002504, intron 1 of 23)	2339	NM_147134	4799	Hs.413074	NM_002504	ENSG00000086102	NFX1	NFX2|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	2.354	nan	2.282	1.918	1.595	0.915	1.894	1.594	0.242	1.478	0.872	1.799	3.172	1.153	0.120	1.685	1.285	3.238	4.475	3.583	3.676	4.815	2.634	5.173	5.473	2.600	3.321	3.156	4.117	3.166	3.146	1.603	2.227	2.221	2.920	1.825	1.967	3.751	1.998	1.717	0.759	0.296	1.072	1.894	1.799	0.369	0.771	0.513	0.569
2671	chr14	73523888	73527374	+	0	NA	intron (NM_021239, intron 1 of 18)	CpG	410	NM_021239	58517	Hs.531106	NM_021239	ENSG00000119707	RBM25	NET52|RED120|RNPC7|S164|Snu71|fSAP94	RNA binding motif protein 25	protein-coding	10.192	3.465	5.700	8.296	5.674	2.897	7.410	4.860	0.547	2.248	0.656	6.021	10.685	5.459	0.222	8.798	6.628	8.391	10.846	10.356	9.169	6.750	4.151	26.963	28.256	5.200	6.693	10.468	nan	15.388	16.244	6.009	8.965	6.486	7.200	17.254	12.989	8.381	nan	4.813	3.758	0.984	4.252	7.410	6.021	1.496	1.585	2.586	4.092
7818	chr8	98034846	98067918	+	0	NA	intron (NM_016134, intron 6 of 7)	intron (NM_016134, intron 6 of 7)	238794	NM_033512	85453	Hs.173094	NM_033512	ENSG00000180543	TSPYL5	-	TSPY like 5	protein-coding	nan	2.552	4.273	0.170	0.307	0.184	0.209	0.240	0.160	0.066	0.105	0.362	0.535	0.068	0.094	0.235	0.136	0.235	nan	0.412	0.591	1.127	0.487	0.264	0.234	0.242	0.388	0.717	0.714	0.427	0.227	0.161	0.234	0.158	0.208	3.560	8.620	0.284	0.363	0.025	0.149	0.054	0.058	0.209	0.362	0.030	0.046	0.063	2.429
8372	chrX	20270277	20285740	+	0	NA	intron (NM_004586, intron 1 of 21)	intron (NM_004586, intron 1 of 21)	6742	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding	1.394	1.941	0.864	1.144	0.965	0.422	0.517	0.734	0.101	0.582	0.378	0.656	6.941	0.322	0.082	0.424	0.528	0.879	1.147	1.842	1.512	1.947	0.895	1.132	1.179	0.969	1.279	1.479	2.357	1.130	0.932	0.336	0.588	0.512	0.595	1.119	1.442	0.867	0.373	0.407	0.709	0.129	0.774	0.517	0.656	0.084	0.512	0.085	0.335
5497	chr3	117359932	117439227	+	0	NA	Intergenic	MIRb|SINE|MIR	759301	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA	0.826	nan	0.675	0.109	0.452	0.216	0.218	0.092	0.108	0.122	0.118	0.122	0.363	5.015	0.165	0.306	0.235	0.271	0.264	0.337	nan	0.234	0.136	0.246	0.227	nan	0.610	0.365	0.302	0.730	0.397	0.078	0.142	0.043	0.047	0.318	0.624	0.861	0.597	0.221	0.292	0.009	0.097	0.218	0.122	0.001	0.064	0.027	0.155
2417	chr13	103041044	103055520	+	0	NA	TTS (NR_036487)	TTS (NR_036487)	1354	NR_036487	283481	Hs.646604	NR_036487	ENSG00000272143	FGF14-AS2	-	FGF14 antisense RNA 2	ncRNA	1.385	1.211	1.091	1.869	1.581	0.865	2.855	0.113	0.067	0.412	0.234	1.850	15.049	0.352	0.096	1.953	2.214	0.223	0.273	3.056	2.553	3.588	1.450	0.536	0.385	1.019	nan	1.579	2.980	1.415	1.577	0.352	0.414	6.937	9.991	1.829	nan	0.449	0.286	2.743	1.427	1.834	1.344	2.855	1.850	0.270	1.059	0.034	0.444
8402	chrX	114953116	115017890	+	0	NA	intron (NR_132337, intron 1 of 1)	CpG	99941	NR_132337	642776	Hs.634316	NR_130730	ENSG00000235244	DANT2	-	DXZ4 associated non-coding transcript 2, distal	ncRNA	1.081	1.169	3.465	8.892	4.464	2.183	14.758	3.525	1.015	1.829	1.232	4.216	0.573	10.865	0.422	6.907	6.799	3.767	5.824	0.529	0.554	1.169	0.618	11.925	11.619	10.040	11.524	8.081	9.465	16.202	16.250	7.538	9.141	3.022	2.683	2.509	2.527	0.807	0.480	0.057	11.869	2.131	6.789	14.758	4.216	9.585	5.171	4.058	1.121
1369	chr11	32272825	32282171	+	0	NA	Intergenic	Intergenic	-112040	NR_132770	106635521		NR_132770		SNORA88	-	small nucleolar RNA, H/ACA box 88	snoRNA	1.270	0.904	nan	0.121	0.345	0.430	0.416	0.089	0.078	0.067	0.088	0.111	0.305	0.023	0.073	0.404	0.247	0.199	0.259	0.302	0.212	0.136	0.058	0.229	0.231	6.111	5.730	0.108	0.094	0.707	0.491	0.303	0.339	0.151	0.087	0.946	nan	0.717	0.638	0.017	0.095	0.051	0.025	0.416	0.111	0.541	0.044	0.084	0.744
54	chr1	7700223	7717740	+	0	NA	intron (NM_015215, intron 7 of 22)	intron (NM_015215, intron 7 of 22)	-122348	NM_004781	9341	Hs.66708	NM_004781	ENSG00000049245	VAMP3	CEB	vesicle associated membrane protein 3	protein-coding	1.042	nan	0.832	1.452	0.548	0.366	0.529	0.077	0.119	0.455	0.175	0.574	2.032	0.068	0.082	0.287	0.254	0.171	0.265	1.956	2.067	2.012	0.885	0.183	0.246	0.383	nan	nan	6.095	nan	0.681	0.438	0.392	0.244	0.264	0.430	0.850	1.157	0.714	3.410	0.877	0.093	0.073	0.529	0.574	0.232	0.780	0.040	0.162
1151	chr10	78188835	78196507	+	0	NA	intron (NR_131178, intron 7 of 7)	intron (NR_131178, intron 7 of 7)	-455131	NR_120655	101929328	Hs.664552	NR_120655	ENSG00000236467	KCNMA1-AS1	-	KCNMA1 antisense RNA 1	ncRNA	0.922	nan	0.741	1.134	3.674	2.222	2.942	1.337	0.134	2.060	0.524	7.546	1.245	0.014	0.053	0.421	0.407	0.194	0.473	4.516	5.905	6.622	4.406	0.233	0.309	1.769	2.238	4.020	nan	0.385	0.301	0.279	0.434	2.446	1.398	0.124	nan	3.732	2.107	0.820	2.228	0.335	0.797	2.942	7.546	0.647	0.066	0.136	0.016
7607	chr8	17764296	17771244	+	0	NA	Intergenic	HERVK-int|LTR|ERVK	-12596	NM_006197	5108	Hs.491148	NM_006197	ENSG00000078674	PCM1	PTC4|RET/PCM-1	pericentriolar material 1	protein-coding	1.272	1.107	nan	0.129	0.851	0.438	0.501	0.119	0.046	0.234	0.197	0.258	0.154	0.173	0.141	0.561	0.262	1.978	2.836	0.663	nan	1.957	0.348	0.592	0.610	0.294	0.433	0.766	0.625	0.741	0.427	0.125	0.210	0.862	1.030	0.903	2.508	1.754	0.966	0.048	0.115	0.149	0.023	0.501	0.258	0.082	4.456	0.041	1.533
3347	chr17	28254690	28265338	+	0	NA	intron (NM_001145053, intron 1 of 14)	intron (NM_001145053, intron 1 of 14)	-2768	NM_001282130	85464	Hs.654754	NM_033389	ENSG00000141298	SSH2	SSH-2|SSH-2L	slingshot protein phosphatase 2	protein-coding	nan	nan	nan	0.898	3.068	1.779	1.560	1.390	0.257	0.756	0.264	2.065	6.249	1.734	0.185	3.096	3.803	2.690	3.210	3.857	3.274	2.678	0.886	2.926	3.026	1.763	2.126	2.073	3.324	6.382	6.050	2.148	3.855	3.193	3.134	2.380	nan	1.227	0.678	2.297	2.438	0.984	1.578	1.560	2.065	0.974	1.027	2.641	1.285
1204	chr10	105248971	105275740	+	0	NA	intron (NR_120675, intron 2 of 3)	MLT1B|LTR|ERVL-MaLR	8620	NM_004210	9148	Hs.594708	NM_004210	ENSG00000107954	NEURL1	NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1	neuralized E3 ubiquitin protein ligase 1	protein-coding	nan	nan	0.601	0.312	1.458	0.750	0.471	0.204	0.144	0.123	0.122	1.941	0.887	0.093	0.066	0.581	0.966	0.261	0.489	2.504	2.688	1.850	0.760	0.275	0.315	0.131	nan	8.708	7.526	0.224	0.138	0.330	0.395	0.199	0.188	0.270	nan	0.929	0.534	0.254	2.964	0.043	1.185	0.471	1.941	0.057	0.208	0.144	0.074
2520	chr14	29883585	29943748	+	0	NA	Intergenic	Intergenic	483233	NM_002742	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding	1.181	0.851	0.652	0.189	0.355	0.169	0.715	1.559	0.240	0.097	0.142	0.228	0.387	0.143	0.132	0.312	0.197	0.396	0.264	0.619	0.801	1.728	0.634	0.148	0.126	7.940	8.760	0.297	0.318	0.707	0.270	0.127	0.155	1.314	2.224	0.233	0.496	0.525	0.493	0.064	0.599	0.393	0.126	0.715	0.228	0.089	0.094	0.031	0.059
7896	chr8	119781869	119795275	+	0	NA	Intergenic	Intergenic	-154338	NR_109794	401474	Hs.359393	NM_207506	ENSG00000177570	SAMD12	-	sterile alpha motif domain containing 12	protein-coding	nan	nan	2.062	0.183	0.237	0.132	0.094	0.139	0.120	0.093	0.098	0.053	0.704	0.049	0.090	0.326	0.172	0.203	0.272	1.021	1.342	nan	2.205	0.694	nan	0.390	nan	0.315	0.316	0.387	0.202	0.089	0.243	0.615	0.611	0.301	0.402	0.789	0.870	0.025	0.081	0.099	0.018	0.094	0.053	0.015	0.561	0.028	0.065
88	chr1	12533331	12548109	+	0	NA	intron (NM_018156, intron 66 of 68)	intron (NM_018156, intron 66 of 68)	-26580	NR_003025	677885	Hs.658450	NR_003025	ENSG00000239149	SNORA59A	ACA59	small nucleolar RNA, H/ACA box 59A	snoRNA	1.879	1.287	nan	0.334	0.663	0.239	0.261	0.795	0.057	0.116	0.212	0.121	0.381	0.074	0.102	0.472	0.754	1.912	7.193	0.683	0.827	0.363	0.140	0.337	nan	0.519	nan	3.122	2.092	nan	0.223	0.241	0.341	0.764	0.184	0.321	0.611	0.380	0.345	0.087	0.060	0.261	0.037	0.261	0.121	0.053	0.130	0.081	0.135
1009	chr10	6908462	6923256	+	0	NA	Intergenic	Intergenic	94299	NR_038291	100507127	Hs.498571	NR_038291	ENSG00000238266	LINC00707	-	long intergenic non-protein coding RNA 707	ncRNA	0.468	0.574	0.494	0.071	0.144	0.086	0.078	0.117	0.109	0.042	0.073	0.048	0.167	0.044	0.096	0.454	0.603	0.181	0.250	0.158	0.170	5.858	1.423	0.076	0.131	0.106	0.260	0.092	0.125	0.954	0.622	0.255	0.276	0.017	0.048	0.231	0.543	0.108	0.199	0.010	0.102	0.013	0.032	0.078	0.048	0.006	0.048	0.067	0.225
8360	chrUn_gl000220	43113	74737	+	0	NA	Intergenic	Intergenic	-38204	NR_038958	100507412	Hs.426704	NR_038958		LOC100507412	-	uncharacterized LOC100507412	ncRNA	nan	nan	2.548	0.614	nan	0.578	0.511	0.478	0.272	0.651	nan	0.659	2.432	0.306	0.266	0.936	0.635	1.473	2.750	1.285	1.470	0.429	0.174	1.102	0.955	0.633	1.106	0.272	0.365	nan	0.600	0.795	1.199	1.173	nan	0.515	nan	0.820	1.264	4.954	0.455	0.228	0.133	0.511	0.659	0.074	1.117	0.264	0.180
403	chr1	92945738	92951590	+	0	NA	intron (NM_001127215, intron 2 of 6)	CpG-1329	692	NM_001127215	2672	Hs.73172	NM_005263	ENSG00000162676	GFI1	GFI-1|GFI1A|SCN2|ZNF163	growth factor independent 1 transcriptional repressor	protein-coding	nan	nan	0.570	2.974	1.532	0.701	0.791	0.128	0.055	0.602	0.170	1.155	3.300	0.440	0.060	0.405	0.182	0.530	0.970	3.566	nan	4.624	0.991	4.305	4.155	1.754	nan	3.227	4.359	nan	0.773	0.369	0.559	0.268	0.192	0.224	0.401	1.977	1.244	1.250	0.541	0.040	8.045	0.791	1.155	0.241	0.626	0.067	0.064
4825	chr20	5694471	5720536	+	0	NA	Intergenic	AluSc|SINE|Alu	-23530	NM_152504	149840	Hs.529340	NM_152504	ENSG00000171984	C20orf196	-	chromosome 20 open reading frame 196	protein-coding	0.945	2.030	0.784	0.279	0.371	0.185	0.211	0.277	0.112	0.126	0.132	0.142	0.551	0.038	0.094	1.893	1.293	0.398	0.452	0.294	0.380	1.126	0.357	0.238	0.263	0.432	0.750	4.105	2.948	0.866	0.420	0.301	0.421	0.194	0.321	0.397	0.860	0.501	0.419	0.092	0.126	0.037	0.040	0.211	0.142	0.095	0.787	0.087	0.136
7117	chr7	801164	819970	+	0	NA	intron (NM_017802, intron 9 of 12)	intron (NM_017802, intron 9 of 12)	-43254	NM_001164759	5575	Hs.520851	NM_002735	ENSG00000188191	PRKAR1B	PRKAR1	protein kinase cAMP-dependent type I regulatory subunit beta	protein-coding	1.153	0.711	1.466	0.771	0.452	0.214	0.869	0.152	0.180	0.777	0.540	0.157	nan	0.145	0.145	2.054	1.929	1.045	nan	4.241	3.771	nan	0.076	2.286	2.400	0.496	0.712	nan	0.778	0.194	0.202	0.198	0.234	1.585	1.564	0.280	0.498	1.658	0.907	3.956	1.699	0.360	1.240	0.869	0.157	0.664	0.179	0.032	0.218
3438	chr17	46304496	46322562	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-58180	NR_131239	105371807	Hs.661105	NR_131239	ENSG00000235300	THRA1/BTR	-	uncharacterized LOC105371807	ncRNA	1.012	1.261	nan	2.521	1.340	0.661	0.106	0.132	0.035	2.277	1.175	1.718	0.460	0.149	0.142	0.593	1.087	0.130	0.148	2.698	nan	5.294	3.031	0.395	0.443	0.134	0.303	6.628	7.659	0.555	0.179	0.202	0.375	4.556	4.163	0.188	0.313	1.181	0.850	0.040	0.275	2.244	0.015	0.106	1.718	0.027	1.255	0.060	0.143
1629	chr11	111106822	111209578	+	0	NA	Intergenic	Intergenic	-11071	NM_001271458	120376	Hs.31409	NM_001136105	ENSG00000214290	COLCA2	C11orf93|CASC13|LOH11CR1G	colorectal cancer associated 2	protein-coding	0.931	1.804	1.203	0.275	2.159	1.144	0.286	0.309	0.077	0.499	0.426	1.473	2.621	0.058	0.115	3.522	nan	7.816	9.511	1.668	1.956	1.075	0.291	2.406	2.470	2.104	nan	1.323	1.119	0.737	0.455	2.099	3.714	2.194	2.663	0.282	0.747	1.046	0.729	1.866	0.193	0.922	0.249	0.286	1.473	0.580	0.604	2.582	0.145
6576	chr6	291205	337490	+	0	NA	intron (NR_104473, intron 3 of 5)	intron (NR_104473, intron 3 of 5)	22290	NM_001286555	56940	Hs.29106	NM_020185	ENSG00000112679	DUSP22	JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX	dual specificity phosphatase 22	protein-coding	1.349	1.018	1.428	1.844	1.318	0.621	0.463	0.315	0.150	1.564	0.805	2.532	1.554	0.576	0.106	1.155	1.399	0.747	1.186	1.082	1.112	3.253	1.182	1.443	1.439	0.445	0.817	1.358	1.709	0.834	0.553	0.477	0.691	1.244	0.902	0.428	0.526	2.188	1.333	1.313	3.079	0.216	0.186	0.463	2.532	0.130	0.386	0.169	0.153
4197	chr2	6774446	6789660	+	0	NA	Intergenic	Intergenic	-7215	NR_110498	102800315	Hs.729713	NR_110498	ENSG00000236172	LINC01246	-	long intergenic non-protein coding RNA 1246	ncRNA	0.766	0.549	0.843	0.104	0.356	0.179	0.260	0.049	0.027	0.122	0.130	0.270	0.386	0.049	0.097	0.394	0.385	0.277	0.368	0.360	0.532	0.356	0.172	0.106	0.076	6.185	6.275	0.263	0.303	0.957	1.069	0.050	0.158	0.056	0.050	1.102	3.152	0.201	0.369	0.025	0.134	0.019	0.140	0.260	0.270	0.673	0.033	0.006	0.689
7003	chr6	139132258	139144033	+	0	NA	intron (NM_001077706, intron 4 of 21)	L1MB8|LINE|L1	20897	NM_001195037	345930	Hs.660603	NM_001077706	ENSG00000203734	ECT2L	ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5	epithelial cell transforming 2 like	protein-coding	3.647	2.670	3.483	1.764	4.546	2.634	0.468	0.133	0.054	0.934	0.500	2.416	5.700	0.166	0.154	0.651	0.593	2.681	8.753	2.233	2.153	7.333	3.422	0.813	0.806	1.993	2.121	5.520	6.643	3.659	3.678	0.394	0.829	8.021	8.865	0.324	nan	1.576	0.875	2.395	0.264	2.748	0.742	0.468	2.416	0.437	1.051	0.363	0.109
4366	chr2	55458065	55461994	+	0	NA	promoter-TSS (NM_152385)	promoter-TSS (NM_152385)	215	NM_001177413	6233	Hs.311640	NM_002954	ENSG00000143947	RPS27A	CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80	ribosomal protein S27a	protein-coding	5.781	nan	4.009	6.560	6.093	3.598	4.657	2.965	0.122	4.698	2.120	6.454	12.364	6.187	0.176	8.456	8.002	9.850	13.629	9.524	11.011	7.999	4.722	22.082	23.877	4.784	6.748	13.256	16.045	12.676	11.729	4.883	8.755	4.561	5.528	9.681	9.520	4.046	2.213	4.105	4.229	0.899	2.171	4.657	6.454	1.785	4.475	2.742	3.628
6053	chr4	154404292	154420811	+	0	NA	intron (NM_015196, intron 3 of 34)	intron (NM_015196, intron 3 of 34)	25053	NM_001131007	23240	Hs.732450	NM_015196	ENSG00000121210	KIAA0922	TMEM131L	KIAA0922	protein-coding	nan	1.156	0.675	0.327	0.695	0.253	0.428	0.677	0.182	0.219	0.161	0.754	0.267	0.066	0.079	0.767	0.779	4.069	5.891	0.464	0.446	0.571	0.172	0.382	0.479	0.533	0.778	0.708	0.953	0.295	0.121	0.798	1.146	0.600	0.768	0.198	0.494	0.861	0.610	0.118	0.182	0.116	0.136	0.428	0.754	0.035	0.037	0.270	0.023
3454	chr17	48932685	48946796	+	0	NA	3' UTR (NM_001243885, exon 2 of 2)	3' UTR (NM_001243885, exon 2 of 2)	3975	NM_001243885	10140	Hs.703321	NM_005749	ENSG00000141232	TOB1	APRO5|APRO6|PIG49|TOB|TROB|TROB1	transducer of ERBB2, 1	protein-coding	4.085	3.476	nan	3.197	5.251	2.860	1.922	1.768	0.296	2.150	0.947	3.217	8.157	2.822	0.176	3.822	4.731	2.549	4.228	5.144	nan	4.911	2.612	8.588	8.799	2.622	3.126	5.662	nan	5.217	4.949	3.093	5.982	4.497	4.783	3.488	4.322	1.781	0.978	2.684	3.240	1.293	2.463	1.922	3.217	0.885	2.031	2.509	1.454
8189	chr9	90485238	90489413	+	0	NA	Intergenic	Intergenic	-10447	NM_178828	286234	Hs.130672	NM_178828	ENSG00000177992	SPATA31E1	C9orf79|FAM75E1	SPATA31 subfamily E member 1	protein-coding	3.139	nan	0.974	0.062	0.213	0.191	0.120	0.280	0.231		0.071	0.114	0.648	0.051	0.035	0.169	0.127	0.218	nan	0.300	0.350	0.134	0.041	0.228	0.204	2.009	1.926	0.124	0.167	1.058	1.281	0.134	0.109	0.114	0.108	0.157	0.144	0.652	0.680	0.027	0.030	0.023	0.058	0.120	0.114	3.727			0.058
4382	chr2	63960582	63976065	+	0	NA	Intergenic	LTR90A|LTR|LTR	-99775	NM_001001521	7360	Hs.516217	NM_006759	ENSG00000169764	UGP2	UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379	UDP-glucose pyrophosphorylase 2	protein-coding	1.328	0.981	nan	0.782	0.617	0.268	0.068	3.234	0.115	0.191	0.159	0.088	0.530	0.092	0.128	0.354	0.264	0.314	0.549	0.359	0.428	nan	0.211	3.577	3.515	0.684	0.773	2.147	1.050	0.597	0.214	0.898	0.764	0.103	0.228	1.456	6.202	0.581	0.647	0.104	0.280	0.037	0.421	0.068	0.088	0.044	0.074	0.238	2.086
6626	chr6	15722419	15740555	+	0	NA	Intergenic	Intergenic	-68198	NM_001271669	84062	Hs.571148	NM_032122	ENSG00000047579	DTNBP1	BLOC1S8|DBND|HPS7|My031|SDY	dystrobrevin binding protein 1	protein-coding	1.122	nan	0.871	0.568	3.793	2.042	0.966	0.134	0.036	0.284	0.150	5.546	0.199	0.035	0.063	0.347	0.361	0.179	0.379	1.604	1.583	3.050	1.832	0.325	0.241	0.352	0.536	0.593	0.579	0.670	0.329	0.135	0.249	0.531	0.523	0.498	1.355	0.725	0.514	0.031	0.142	0.073	0.325	0.966	5.546	0.070	0.157	0.060	0.403
2885	chr15	57786462	57820362	+	0	NA	intron (NM_001252335, intron 9 of 19)	intron (NM_001252335, intron 9 of 19)	-80690	NR_104368	145781	Hs.437256	NM_001018090	ENSG00000137878	GCOM1	GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom	GRINL1A complex locus 1	protein-coding	0.785	0.853	3.038	1.313	2.232	1.051	0.379	0.144	0.053	0.444	0.273	3.378	1.908	0.045	0.087	0.541	0.682	0.381	0.896	1.062	1.057	1.968	0.754	0.269	0.267	0.488	0.851	4.975	4.501	0.743	0.444	0.376	0.638	0.880	0.901	0.331	0.551	0.931	0.672	0.381	0.221	0.123	0.136	0.379	3.378	0.057	2.070	0.249	0.123
3106	chr16	30188487	30206917	+	0	NA	intron (NM_007074, intron 2 of 10)	intron (NM_007074, intron 2 of 10)	-2303	NR_002454	606724	Hs.744975	NR_002454		LOC606724	-	coronin 1A pseudogene	pseudo	1.789	1.333	1.788	2.270	1.286	0.722	1.280	0.673	0.126	0.510	0.331	2.360	5.781	1.145	0.096	1.960	2.020	1.493	1.971	2.098	1.717	3.889	1.275	1.829	1.694	1.510	2.217	5.479	6.450	2.179	2.253	0.623	0.954	1.712	1.689	1.202	1.939	0.905	0.657	2.048	1.632	0.473	0.546	1.280	2.360	0.568	1.717	0.276	0.550
2488	chr14	23745915	23757620	+	0	NA	intron (NM_020834, intron 1 of 1)	intron (NM_020834, intron 1 of 1)	3542	NM_020834	57594	Hs.632332	NM_020834	ENSG00000215271	HOMEZ	KIAA1443	homeobox and leucine zipper encoding	protein-coding	nan	1.977	3.010	1.490	1.126	0.599	0.471	1.010	0.300	0.366	0.253	0.994	2.675	1.335	0.107	0.467	0.661	1.114	1.573	1.849	1.354	1.317	0.269	1.524	1.604	1.173	1.643	1.529	nan	2.457	2.538	0.685	1.322	1.108	1.094	5.866	10.905	0.881	0.634	1.279	1.293	0.221	0.658	0.471	0.994	0.333	0.771	0.659	4.128
3869	chr18	61084988	61091118	+	0	NA	intron (NM_004869, intron 1 of 10)	AluSx1|SINE|Alu	1699	NM_004869	9525	Hs.126550	NM_004869	ENSG00000119541	VPS4B	MIG1|SKD1|SKD1B|VPS4-2	vacuolar protein sorting 4 homolog B	protein-coding	2.319	2.230	2.475	3.811	2.700	1.172	4.294	1.085	0.183	1.154	0.675	4.423	6.495	1.701	0.104	4.076	4.040	4.507	6.565	7.361	6.501	8.062	4.334	13.913	nan	1.792	nan	5.907	8.677	4.419	3.797	2.372	4.020	3.965	4.947	2.463	2.391	5.640	3.311	2.138	1.565	0.594	1.872	4.294	4.423	0.773	1.271	1.242	0.811
1985	chr12	59335068	59346662	+	0	NA	Intergenic	AluSp|SINE|Alu	-26546	NM_153377	121227	Hs.253736	NM_153377	ENSG00000139263	LRIG3	LIG3	leucine rich repeats and immunoglobulin like domains 3	protein-coding	nan	0.794	0.696	0.113	0.280	0.152	0.206	0.146	0.221	0.134	0.211	0.186	0.748	0.037	0.094	nan	0.219	0.174	0.414	0.279	nan	1.363	0.386	0.214	0.257	0.272	nan	0.559	nan	0.319	0.157	0.149	0.230	4.235	5.081	0.165	0.256	0.678	0.683	0.053	0.204	1.358	0.049	0.206	0.186	0.083	0.457	0.043	0.032
2669	chr14	73024606	73042313	+	0	NA	TTS (NR_135235)	TTS (NR_135235)	49931	NR_106994	102465832		NR_106994	ENSG00000273830	MIR7843	hsa-mir-7843	microRNA 7843	ncRNA	2.424	0.534	5.412	0.079	0.166	0.046	0.137	0.160	0.045	0.062	0.074	0.061	0.294	0.025	0.083	0.655	0.717	0.185	0.296	0.241	0.283	0.095	0.068	0.487	0.479	0.148	0.277	0.221	nan	0.769	0.542	0.261	0.232	0.074	0.100	0.150	0.196	0.441	nan	0.059	0.085	0.016	0.165	0.137	0.061	0.314	0.040	0.011	0.153
3567	chr17	75066339	75103584	+	0	NA	promoter-TSS (NR_106997)	promoter-TSS (NR_106997)	236	NR_027058	654434	Hs.720923	NR_027058	ENSG00000234912	SNHG20	C17orf86|LINC00338|NCRNA00338|SCARNA16HG	small nucleolar RNA host gene 20	ncRNA	1.513	1.530	1.087	1.303	1.885	1.007	1.276	0.774	0.276	1.172	0.894	1.019	2.070	0.448	0.118	1.862	1.825	0.729	1.038	1.339	1.304	3.737	0.893	7.154	7.652	nan	1.666	1.634	2.109	2.130	1.726	0.980	1.206	1.950	2.087	1.029	1.777	nan	0.996	0.458	0.405	0.634	0.248	1.276	1.019	0.246	0.597	0.654	0.476