PeakID (cmd=annotatePeaks.pl merged_SE_SSE2_SQ9.GO0003677.bed hg19 -size given -wig ./H2170_ab4729_0906_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H226_6_7_ab4729_S6_p5_swig_ss100_treat_afterfiting_all.scaled.wig ./H2887_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H520_5_14_ab4729_S5_p5_swig_ss100_treat_afterfiting_all.scaled.wig ./HARA_7_21_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./HCC15_ab4729_0906_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./HCC2279_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig ./HCC2450_K27Ac_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./HCC2450_ab4729_0219_p5_swig_treat_afterfiting_all.scaled.wig ./HCC2814_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./HCC95_K27Ac_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./KNS62_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./LC1SQSF_7_21_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./LOUNH91_ab4729_0906_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./SW900_ab4729_0906_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./lk2_ab4729_chip_1028_S3_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./lk2_ab4729_chip_1202_S7_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_calu1_ab4729_chip_0414_13c_S9_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_ebc1_ab4729_chip_0414_13c_S10_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_h226_ab4729_chip_0505_12c_S21_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_h520_ab4729_chip_0505_12c_S23_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_sq1_ab4729_chip_0505_12c_S17_hg19_p5_swig_treat_afterfiting_all.scaled.wig) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type ./H2170_ab4729_0906_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H226_6_7_ab4729_S6_p5_swig_ss100_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2887_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H520_5_14_ab4729_S5_p5_swig_ss100_treat_afterfiting_all.scaled.wig wig avg over given bp ./HARA_7_21_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./HCC15_ab4729_0906_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./HCC2279_ab4729_1121_1130_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./HCC2450_K27Ac_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./HCC2450_ab4729_0219_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./HCC2814_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./HCC95_K27Ac_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./KNS62_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./LC1SQSF_7_21_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./LOUNH91_ab4729_0906_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./SW900_ab4729_0906_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./lk2_ab4729_chip_1028_S3_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./lk2_ab4729_chip_1202_S7_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_calu1_ab4729_chip_0414_13c_S9_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_ebc1_ab4729_chip_0414_13c_S10_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_h226_ab4729_chip_0505_12c_S21_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_h520_ab4729_chip_0505_12c_S23_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_sq1_ab4729_chip_0505_12c_S17_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp 1049 chr22 50327051 50330993 + 0 NA Intergenic CpG 16744 NM_001284317 79174 Hs.211282 NM_024324 ENSG00000184164 CRELD2 - cysteine rich with EGF like domains 2 protein-coding 3.309 0.848 1.257 0.476 0.349 0.733 6.880 1.101 2.406 0.709 2.600 3.630 6.650 2.717 7.000 0.576 0.091 1.621 0.331 0.823 0.422 0.736 127 chr1 220686436 220704703 + 0 NA Intergenic L2a|LINE|L2 -5956 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 0.836 0.014 0.177 0.269 1.276 0.055 0.101 0.038 0.071 1.983 1.308 3.396 4.362 0.054 0.405 0.471 0.325 0.074 0.009 0.012 0.190 0.068 71 chr1 115051428 115055972 + 0 NA promoter-TSS (NM_015906) promoter-TSS (NM_015906) 81 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 19.013 1.635 2.000 2.353 3.744 1.330 3.751 0.981 2.682 2.001 0.663 3.494 7.700 3.339 1.490 1.793 1.253 1.880 1.396 1.733 0.939 1.892 1481 chr8 48591144 48597503 + 0 NA intron (NR_104581, intron 8 of 16) intron (NR_104581, intron 8 of 16) 56403 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 0.181 0.069 0.095 0.084 0.362 0.181 0.073 0.087 0.161 0.219 0.037 0.177 0.407 0.102 0.115 2.215 4.054 0.005 0.026 0.352 0.507 0.075 882 chr2 157187891 157200507 + 0 NA Intergenic Intergenic -4912 NM_006186 4929 Hs.563344 NM_006186 ENSG00000153234 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4 group A member 2 protein-coding 3.415 0.373 3.363 1.102 11.905 2.577 3.685 0.504 2.137 1.609 0.517 2.703 4.973 1.880 1.870 1.904 1.612 1.471 1.127 0.413 0.866 2.424 1488 chr8 59833876 59886453 + 0 NA intron (NM_014729, intron 2 of 8) intron (NM_014729, intron 2 of 8) 171603 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 0.162 0.026 0.070 0.084 2.225 0.061 0.079 0.103 0.268 0.207 0.043 0.270 0.131 0.332 0.095 0.031 0.051 0.035 0.020 0.085 0.053 0.072 1050 chr22 50337766 50364506 + 0 NA Intergenic Intergenic -3007 NM_001001852 415116 Hs.530381 NM_001001852 ENSG00000198355 PIM3 pim-3 Pim-3 proto-oncogene, serine/threonine kinase protein-coding 2.184 0.458 0.686 0.829 1.112 0.308 1.906 0.758 1.372 1.009 1.993 2.927 5.952 1.845 2.563 0.578 0.415 1.057 0.399 0.697 0.419 0.704 560 chr16 69429067 69448463 + 0 NA Intergenic Intergenic -18874 NM_005652 7014 Hs.63335 NM_005652 ENSG00000132604 TERF2 TRBF2|TRF2 telomeric repeat binding factor 2 protein-coding 0.373 0.160 3.875 0.496 2.110 1.379 0.383 0.129 0.227 1.096 0.758 2.131 5.923 0.186 0.199 0.342 0.345 0.189 0.390 0.264 0.467 0.508 1178 chr4 81154864 81161393 + 0 NA Intergenic Intergenic -29614 NM_033143 2250 Hs.37055 NM_004464 ENSG00000138675 FGF5 HBGF-5|Smag-82|TCMGLY fibroblast growth factor 5 protein-coding 0.212 0.379 0.013 0.016 0.160 0.035 0.699 0.062 0.273 0.667 0.136 1.052 0.103 0.793 0.921 0.019 0.019 6.448 0.006 1.608 4.888 898 chr2 180318162 180331971 + 0 NA intron (NM_001113398, intron 4 of 7) LTR8A|LTR|ERV1 102249 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 0.180 0.242 0.253 0.217 0.131 0.044 2.705 0.796 4.504 0.322 0.006 0.245 0.119 0.883 0.438 0.011 0.009 0.855 0.298 0.827 0.200 0.364 798 chr19 44280858 44290816 + 0 NA promoter-TSS (NM_002250) promoter-TSS (NM_002250) -428 NM_002250 3783 Hs.10082 NM_002250 ENSG00000104783 KCNN4 DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4 potassium calcium-activated channel subfamily N member 4 protein-coding 1.585 0.311 0.806 0.193 0.618 2.141 5.315 0.984 2.364 0.386 0.305 2.109 0.567 2.056 2.330 0.061 0.135 1.801 2.828 0.535 0.023 3.290 1387 chr7 6047481 6060706 + 0 NA intron (NM_001326609, intron 2 of 4) AluSx|SINE|Alu 3737 NM_001326611 7965 Hs.301613 NM_006303 ENSG00000106305 AIMP2 JTV-1|JTV1|P38 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 protein-coding 3.316 0.581 1.095 4.371 3.446 1.098 2.310 0.472 1.916 1.745 0.788 2.782 2.861 2.868 1.086 0.844 0.887 0.937 0.685 1.020 0.833 0.709 1031 chr22 30582194 30638870 + 0 NA Intergenic Intergenic 32308 NM_001257135 3976 Hs.2250 NM_002309 ENSG00000128342 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 1.005 0.780 1.935 0.351 0.790 0.304 4.122 0.757 1.422 0.843 0.397 0.913 1.309 0.744 0.870 0.066 0.104 1.341 2.509 1.978 0.241 1.438 512 chr15 99189343 99201726 + 0 NA intron (NM_000875, intron 1 of 20) intron (NM_000875, intron 1 of 20) -1084 NR_126453 104472848 Hs.349049 NR_126453 IRAIN IGF1R-AS IGF1R antisense imprinted non-protein coding RNA ncRNA 1.523 1.240 0.336 0.233 7.869 1.029 1.616 0.391 1.623 2.174 1.695 6.219 3.571 0.750 1.068 2.016 1.108 1.018 0.166 2.222 0.018 0.391 1273 chr5 172323516 172334798 + 0 NA intron (NM_001031711, intron 3 of 9) intron (NM_001031711, intron 3 of 9) -56575 NM_001317981 51121 Hs.546390 NM_016093 ENSG00000037241 RPL26L1 RPL26P1 ribosomal protein L26 like 1 protein-coding 1.327 3.391 0.810 0.165 1.090 1.160 2.517 0.216 1.086 0.672 0.158 0.727 0.325 2.982 1.645 0.061 0.073 6.980 0.424 8.091 0.122 1.670 463 chr15 37379022 37404299 + 0 NA promoter-TSS (NM_172316) promoter-TSS (NM_172316) -63 NM_172316 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 HsT18361|MRG1 Meis homeobox 2 protein-coding 0.824 2.506 0.542 0.187 13.786 0.591 0.504 0.317 1.503 0.811 0.457 2.284 1.102 0.638 0.610 0.411 0.387 0.818 0.251 5.841 0.090 0.314 517 chr15 99437847 99445277 + 0 NA intron (NM_000875, intron 4 of 20) intron (NM_000875, intron 4 of 20) 107323 NM_001102612 145814 Hs.592021 NM_001102612 ENSG00000183571 PGPEP1L - pyroglutamyl-peptidase I-like protein-coding 1.792 1.629 0.315 0.069 3.529 3.365 0.562 0.192 0.395 1.224 1.541 2.589 5.112 0.534 0.924 0.043 0.016 0.865 0.135 5.100 0.031 0.444 458 chr14 104176887 104183360 + 0 NA intron (NM_001100119, intron 1 of 9) intron (NM_001100119, intron 1 of 9) 1700 NM_001100118 7517 Hs.592325 NM_005432 ENSG00000126215 XRCC3 CMM6 X-ray repair cross complementing 3 protein-coding 1.790 0.230 1.218 1.144 7.044 1.825 1.322 0.573 2.359 2.849 0.834 7.121 3.232 0.486 0.581 1.040 0.741 0.712 0.550 0.222 0.679 0.494 451 chr14 100703272 100707708 + 0 NA 5' UTR (NM_003403, exon 1 of 5) 5' UTR (NM_003403, exon 1 of 5) 388 NM_003403 7528 Hs.388927 NM_003403 ENSG00000100811 YY1 DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1 YY1 transcription factor protein-coding 3.485 0.923 5.703 3.218 10.141 3.147 5.015 1.462 6.270 5.267 1.692 7.691 10.141 2.186 3.436 2.618 1.239 3.919 3.533 1.373 2.153 1.642 454 chr14 102777954 102787179 + 0 NA Intergenic Intergenic -1148 NM_001267827 55778 Hs.743359 NM_018335 ENSG00000022976 ZNF839 C14orf131 zinc finger protein 839 protein-coding 2.391 0.389 1.987 1.304 2.505 2.310 2.055 2.057 7.353 1.712 0.704 2.665 3.888 0.947 1.283 0.954 0.892 1.776 0.991 0.579 0.911 0.940 1364 chr6 114176300 114182923 + 0 NA intron (NM_002356, intron 1 of 1) intron (NM_002356, intron 1 of 1) 1097 NM_002356 4082 Hs.519909 NM_002356 ENSG00000277443 MARCKS 80K-L|MACS|PKCSL|PRKCSL myristoylated alanine rich protein kinase C substrate protein-coding 2.574 2.280 2.883 4.952 2.968 0.484 3.843 0.696 3.026 4.386 0.708 11.439 8.059 5.253 1.466 3.922 2.726 3.440 0.658 3.843 4.904 1.271 1408 chr7 36312867 36343683 + 0 NA intron (NM_030636, intron 6 of 7) AluJo|SINE|Alu 78507 NM_001199707 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 0.901 0.169 1.475 4.535 0.361 0.223 1.577 0.163 0.453 0.457 0.219 2.248 2.159 0.420 0.370 0.159 0.251 0.132 2.177 0.253 2.217 0.390 1250 chr5 134896535 134924487 + 0 NA intron (NM_004887, intron 2 of 3) intron (NM_004887, intron 2 of 3) 4458 NM_004887 9547 Hs.483444 NM_004887 ENSG00000145824 CXCL14 BMAC|BRAK|KEC|KS1|MIP-2g|MIP2G|NJAC|SCYB14 C-X-C motif chemokine ligand 14 protein-coding 0.197 0.044 0.176 7.617 0.574 0.070 0.099 0.087 0.123 0.356 0.292 0.213 0.196 0.153 0.100 1.506 1.551 0.010 0.015 0.068 4.239 0.037 1363 chr6 113963527 113977279 + 0 NA intron (NR_125844, intron 1 of 2) intron (NR_125844, intron 1 of 2) 874 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LOC101927686 - uncharacterized LOC101927686 ncRNA 0.496 0.333 0.152 0.339 0.776 0.088 0.358 0.203 0.318 1.119 0.701 3.271 3.424 0.386 0.121 0.057 0.108 0.134 0.104 0.841 1.060 0.130 722 chr18 20393065 20413628 + 0 NA Intergenic L2c|LINE|L2 -36546 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 0.226 0.434 0.092 0.068 4.001 0.048 0.147 0.084 0.140 0.344 0.442 1.442 0.877 0.082 0.107 0.027 0.018 0.079 0.039 1.416 0.028 0.152 634 chr17 38253671 38281197 + 0 NA Intergenic Intergenic -10456 NM_021724 9572 Hs.724 NM_021724 ENSG00000126368 NR1D1 EAR1|THRA1|THRAL|ear-1|hRev nuclear receptor subfamily 1 group D member 1 protein-coding 2.534 0.607 1.689 1.669 3.705 1.850 2.761 0.467 2.122 2.028 0.765 4.182 2.908 2.167 0.965 1.217 0.924 1.387 1.265 0.792 1.307 1.197 1109 chr3 156330062 156340571 + 0 NA Intergenic Arthur1A|DNA|hAT-Tip100 -56889 NM_015508 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 0.254 0.221 0.126 0.153 0.513 0.058 0.651 0.937 1.715 0.833 1.972 1.289 1.792 0.079 0.198 0.083 0.230 2.906 0.029 0.559 0.132 2.329 578 chr16 88365758 88368693 + 0 NA Intergenic Intergenic -126654 NM_001127464 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 0.690 1.965 3.067 6.289 2.813 1.062 0.945 3.139 8.525 10.369 3.207 5.135 11.887 1.242 1.238 0.813 0.900 3.910 0.708 2.718 3.080 0.324 1630 chrX 153283660 153286238 + 0 NA TTS (NR_031757) TTS (NR_031757) 393 NM_001025242 3654 Hs.522819 NM_001569 ENSG00000184216 IRAK1 IRAK|pelle interleukin 1 receptor associated kinase 1 protein-coding 5.758 4.369 2.788 6.555 10.403 2.234 7.631 1.373 4.770 6.246 1.719 5.777 9.250 2.886 2.501 2.747 1.966 3.968 3.283 5.360 3.582 2.394 1597 chr9 129288082 129297870 + 0 NA Intergenic AluSx1|SINE|Alu -83746 NM_001174147 4010 Hs.129133 NM_002316 ENSG00000136944 LMX1B LMX1.2|NPS1 LIM homeobox transcription factor 1 beta protein-coding 0.205 0.051 0.101 0.098 0.195 0.039 0.058 0.041 0.049 0.277 0.025 0.100 0.082 0.108 4.599 4.003 0.014 0.013 0.056 0.148 0.010 695 chr17 69894495 69899948 + 0 NA Intergenic Intergenic 124899 NR_110876 102723505 Hs.547482 NR_110876 ENSG00000228639 LINC02095 - long intergenic non-protein coding RNA 2095 ncRNA 0.176 0.409 0.382 0.098 0.637 0.043 0.102 0.015 0.150 0.302 0.430 0.125 0.966 0.457 0.014 1.571 3.511 1.408 0.062 6.878 978 chr20 51817477 51849153 + 0 NA intron (NM_001193421, intron 1 of 2) Plat_L3|LINE|CR1 31493 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 0.236 0.016 0.153 2.743 0.207 0.077 0.099 0.022 0.072 0.258 0.137 0.215 0.413 0.102 0.075 0.113 0.200 0.032 0.012 0.042 3.098 0.048 728 chr18 53051129 53094668 + 0 NA intron (NM_001330604, intron 5 of 19) intron (NM_001330604, intron 5 of 19) -1672 NM_001306208 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 0.219 0.020 0.131 4.431 0.211 0.151 0.032 0.150 0.178 0.301 0.095 0.178 1.014 0.493 0.026 0.832 1.398 0.039 0.003 0.067 6.750 0.039 1244 chr5 133886070 133891703 + 0 NA intron (NM_015288, intron 4 of 10) AluJo|SINE|Alu 27088 NM_015288 23338 Hs.732155 NM_015288 ENSG00000043143 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 0.490 2.857 2.639 0.469 1.415 1.652 3.933 0.830 1.460 0.198 0.182 1.002 0.412 3.126 0.307 0.196 0.194 5.723 0.209 6.408 0.940 1.886 742 chr19 3358640 3370315 + 0 NA intron (NM_205843, intron 1 of 10) intron (NM_205843, intron 1 of 10) -2088 NM_005597 4782 Hs.170131 NM_005597 ENSG00000141905 NFIC CTF|CTF5|NF-I|NFI nuclear factor I C protein-coding 0.731 1.521 1.294 3.117 3.267 0.878 4.781 0.254 1.133 1.204 0.557 3.046 3.795 2.335 1.470 1.390 0.976 2.932 0.726 2.024 1.846 0.564 378 chr12 125388635 125414095 + 0 NA Intergenic Intergenic 1272 NR_049820 100847004 NR_049820 ENSG00000265345 MIR5188 mir-5188 microRNA 5188 ncRNA 2.058 1.051 2.968 3.041 7.532 2.143 2.977 1.096 5.540 3.186 1.000 3.256 5.800 3.431 2.083 0.945 1.015 3.457 3.471 2.338 2.112 3.438 325 chr12 15099477 15107467 + 0 NA exon (NM_001321420, exon 3 of 7) exon (NM_001321420, exon 3 of 7) 568 NM_001321423 397 Hs.504877 NM_001175 ENSG00000111348 ARHGDIB D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 Rho GDP dissociation inhibitor beta protein-coding 1.815 0.279 0.116 0.080 0.384 0.095 2.419 0.010 0.009 0.412 0.191 0.835 0.400 0.087 1.750 0.019 0.029 1.181 5.702 0.470 0.072 3.989 29 chr1 27112480 27115808 + 0 NA promoter-TSS (NM_017837) promoter-TSS (NM_017837) -310 NM_017837 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 3.806 3.459 3.345 3.865 7.032 5.411 5.913 2.592 11.822 4.613 1.620 7.578 7.313 4.285 4.241 2.578 1.900 10.777 3.136 6.981 2.412 5.138 889 chr2 161603278 161611512 + 0 NA Intergenic Intergenic -257077 NM_002897 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 2.962 0.226 0.342 0.104 1.323 0.082 3.781 0.273 0.871 0.406 0.302 0.938 0.500 0.288 1.617 0.048 0.044 2.264 2.977 0.365 0.043 5.138 350 chr12 58237808 58241515 + 0 NA intron (NM_005730, intron 1 of 7) CpG 1086 NM_005730 10106 Hs.524530 NM_005730 ENSG00000175215 CTDSP2 OS4|PSR2|SCP2 CTD small phosphatase 2 protein-coding 3.314 3.053 3.169 5.364 8.608 3.274 5.031 0.463 2.341 4.256 2.250 12.027 8.626 4.132 4.009 5.369 2.872 4.179 1.273 4.785 2.930 1.478 1233 chr5 92914008 92926655 + 0 NA 5' UTR (NM_005654, exon 1 of 3) 5' UTR (NM_005654, exon 1 of 3) 1288 NM_005654 7025 Hs.519445 NM_005654 ENSG00000175745 NR2F1 BBOAS|BBSOAS|COUP-TFI|EAR-3|EAR3|ERBAL3|NR2F2|SVP44|TCFCOUP1|TFCOUP1 nuclear receptor subfamily 2 group F member 1 protein-coding 0.469 2.115 4.624 0.490 2.630 0.235 4.302 0.533 2.101 0.751 0.181 2.026 0.316 3.105 1.599 1.006 0.710 2.225 1.995 3.902 0.138 1.467 540 chr16 29826450 29838072 + 0 NA 3' UTR (NM_024516, exon 3 of 3) 3' UTR (NM_024516, exon 3 of 3) 546 NM_005115 9961 Hs.632177 NM_005115 ENSG00000013364 MVP LRP|VAULT1 major vault protein protein-coding 1.575 1.694 4.115 2.172 3.149 2.205 7.940 1.667 5.588 1.690 0.526 5.669 4.973 2.964 2.257 0.909 0.767 7.346 3.108 3.364 1.521 3.188 1615 chr9 139794913 139799349 + 0 NA intron (NM_021138, intron 4 of 10) intron (NM_021138, intron 4 of 10) 15946 NR_039697 100616480 NR_039697 ENSG00000266507 MIR4479 - microRNA 4479 ncRNA 0.859 1.228 7.027 0.161 0.881 4.273 6.933 1.523 2.407 2.429 0.219 3.467 0.191 3.648 2.335 0.141 0.107 4.066 5.451 2.881 1.427 2.298 1162 chr4 4188322 4207738 + 0 NA intron (NM_177998, intron 5 of 5) AluSq2|SINE|Alu 30591 NM_177998 133060 Hs.534544 NM_177998 ENSG00000163982 OTOP1 - otopetrin 1 protein-coding 0.214 0.051 0.102 3.158 0.157 0.055 0.083 0.025 0.121 0.229 0.020 0.102 0.113 0.061 0.215 2.798 3.176 0.031 0.011 0.080 3.379 0.034 58 chr1 68147403 68154392 + 0 NA promoter-TSS (NM_001924) promoter-TSS (NM_001924) 37 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 2.408 2.692 2.353 1.117 5.713 1.263 6.153 1.768 5.331 3.321 1.036 4.556 4.685 3.983 1.477 1.491 1.161 5.224 3.293 5.215 0.508 3.773 684 chr17 59473220 59495073 + 0 NA intron (NM_005994, intron 6 of 6) intron (NM_005994, intron 6 of 6) -4966 NM_203425 388407 Hs.434459 NM_203425 C17orf82 - chromosome 17 open reading frame 82 protein-coding 0.571 0.153 3.080 6.748 2.524 0.220 0.476 0.363 0.929 0.937 0.386 1.366 0.431 1.033 0.593 4.637 2.924 0.354 0.192 0.199 3.256 0.170 211 chr11 808271 811883 + 0 NA intron (NM_001004, intron 1 of 4) CpG 141 NM_001004 6181 Hs.437594 NM_001004 ENSG00000177600 RPLP2 D11S2243E|LP2|P2|RPP2 ribosomal protein lateral stalk subunit P2 protein-coding 4.964 2.365 3.502 3.727 6.189 4.054 4.620 1.321 5.824 10.234 1.290 10.843 7.964 2.640 2.538 2.265 1.277 4.132 1.873 2.615 2.166 1.301 153 chr10 1757609 1780694 + 0 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) 10519 NM_018702 105 Hs.586663 NM_018702 ENSG00000185736 ADARB2 ADAR3|RED2 adenosine deaminase, RNA specific B2 (inactive) protein-coding 0.139 0.117 0.074 6.608 0.064 0.020 0.017 0.048 0.209 0.080 0.550 0.235 0.039 0.072 0.037 0.010 0.009 0.011 0.010 0.045 0.066 861 chr2 100493725 100500194 + 0 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 225086 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 0.084 1.794 0.536 0.175 0.137 3.779 0.783 0.794 0.828 0.180 0.029 0.151 2.347 0.619 0.025 0.038 1.351 0.019 5.073 0.072 0.206 337 chr12 53609955 53628967 + 0 NA intron (NM_001243730, intron 2 of 8) intron (NM_001243730, intron 2 of 8) -5264 NM_001042728 5916 Hs.1497 NM_000966 ENSG00000172819 RARG NR1B3|RARC retinoic acid receptor gamma protein-coding 1.081 1.016 0.921 0.482 4.327 1.736 1.411 0.304 0.872 1.587 1.068 5.001 5.069 2.162 1.226 0.493 0.465 0.790 1.638 1.244 0.236 1.616 1546 chr9 2155057 2164426 + 0 NA intron (NM_001289400, intron 1 of 7) intron (NM_001289400, intron 1 of 7) 1285 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 1.896 0.053 2.507 0.377 3.600 0.383 0.060 0.008 0.103 1.371 0.817 8.477 5.577 0.045 0.646 0.033 0.077 0.397 0.016 0.179 0.439 0.081 101 chr1 157972452 158000248 + 0 NA intron (NM_001286349, intron 1 of 12) intron (NM_001286349, intron 1 of 12) 23287 NM_018240 55243 Hs.272234 NM_018240 ENSG00000183853 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 0.164 0.933 0.353 0.172 1.023 1.095 1.820 1.273 4.798 1.695 0.906 3.127 0.470 1.429 1.258 0.039 0.048 3.004 0.609 2.273 0.099 1.113 340 chr12 53892826 53897134 + 0 NA promoter-TSS (NM_134324) promoter-TSS (NM_134324) 275 NM_134323 6895 Hs.326 NM_004178 ENSG00000139546 TARBP2 LOQS|TRBP|TRBP1|TRBP2 TARBP2, RISC loading complex RNA binding subunit protein-coding 1.828 2.672 3.892 3.551 6.014 2.163 2.645 0.621 2.732 3.209 1.498 6.489 6.985 1.879 2.182 1.923 1.615 2.614 1.306 4.426 1.353 1.092 76 chr1 149898256 149912505 + 0 NA exon (NM_181873, exon 9 of 17) exon (NM_181873, exon 9 of 17) 2886 NM_181873 10903 Hs.425144 NM_006697 ENSG00000014914 MTMR11 CRA myotubularin related protein 11 protein-coding 2.871 0.565 0.987 1.162 3.819 0.783 1.439 0.515 1.951 2.092 0.509 3.695 3.342 1.391 1.858 1.083 1.265 1.829 1.012 1.014 0.924 1.362 311 chr12 7078219 7081279 + 0 NA promoter-TSS (NM_006331) promoter-TSS (NM_006331) 167 NM_001267700 11331 Hs.504620 NM_001144831 ENSG00000215021 PHB2 BAP|BCAP37|Bap37|PNAS-141|REA|hBAP|p22 prohibitin 2 protein-coding 7.339 1.254 1.587 7.343 5.886 4.560 8.061 0.837 3.445 11.775 2.914 10.971 14.268 4.001 2.928 2.596 2.434 3.533 4.217 1.876 3.526 1.659 982 chr20 52191374 52215789 + 0 NA Intergenic Intergenic -3945 NM_006526 7764 Hs.155040 NM_006526 ENSG00000171940 ZNF217 ZABC1 zinc finger protein 217 protein-coding 2.827 1.075 3.140 5.210 4.437 1.079 3.315 1.789 7.173 2.299 1.172 5.075 11.062 4.415 1.497 1.072 1.506 2.335 0.767 2.385 4.877 1.607 571 chr16 86599706 86612758 + 0 NA Intergenic MIR3|SINE|MIR -4865 NR_125795 103752587 Hs.609366 NR_125795 ENSG00000260944 FOXC2-AS1 ODRUL FOXC2 antisense RNA 1 ncRNA 0.193 0.161 9.993 0.221 0.790 0.058 0.825 0.285 0.126 0.874 0.353 0.883 0.898 0.476 0.192 0.054 0.028 0.790 0.006 0.197 0.045 0.209 1214 chr5 33603212 33625605 + 0 NA exon (NM_001324512, exon 14 of 22) exon (NM_001324512, exon 14 of 22) 173526 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 0.185 0.061 0.120 2.869 0.215 0.078 0.083 0.146 0.178 0.331 0.105 0.185 0.288 0.090 0.163 1.137 2.106 0.127 0.013 0.084 4.420 0.098 1190 chr4 129258878 129282887 + 0 NA Intergenic Intergenic -60898 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 0.695 0.230 0.457 0.137 0.306 0.282 0.577 1.181 5.117 0.187 0.118 0.185 0.207 0.444 0.242 0.049 0.085 2.126 0.046 0.530 0.091 0.848 825 chr19 56145556 56156394 + 0 NA Intergenic MER3|DNA|hAT-Charlie -1417 NM_207115 51157 Hs.631551 NM_016202 ENSG00000213015 ZNF580 - zinc finger protein 580 protein-coding 4.004 1.520 1.822 1.638 4.082 1.734 1.848 2.210 10.743 3.481 0.827 3.199 4.692 2.529 2.113 1.178 0.864 0.854 0.689 1.572 0.799 0.496 389 chr13 74145177 74189200 + 0 NA Intergenic L1MA2|LINE|L1 28807 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 0.440 0.011 0.109 0.413 2.037 0.028 0.090 0.019 0.083 0.932 0.137 0.536 3.986 0.082 0.137 0.150 0.232 0.031 0.031 0.058 0.574 0.021 917 chr2 213765777 213785063 + 0 NA Intergenic Intergenic -15561 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA 2.858 0.013 0.729 0.128 1.421 0.308 0.691 0.086 0.190 0.218 0.231 2.585 0.447 0.137 0.769 0.048 0.067 0.537 0.830 0.046 0.048 2.346 495 chr15 74265504 74291201 + 0 NA intron (NM_001256677, intron 5 of 7) L2b|LINE|L2 6337 NM_001256673 9399 Hs.194816 NM_004809 ENSG00000067221 STOML1 SLP-1|STORP|hUNC-24 stomatin like 1 protein-coding 0.560 0.750 0.924 0.671 1.194 0.803 3.090 0.640 1.988 1.080 0.773 2.820 1.259 0.913 1.239 0.185 0.205 3.293 0.685 1.491 0.663 1.007 1345 chr6 50987116 50999246 + 0 NA Intergenic Intergenic 206742 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 0.342 0.092 0.215 0.062 0.150 0.050 0.579 1.845 10.241 0.139 0.008 0.201 0.166 0.173 0.199 0.039 0.020 0.207 0.017 0.385 0.076 0.181 1171 chr4 38663877 38679613 + 0 NA intron (NM_016531, intron 1 of 5) intron (NM_016531, intron 1 of 5) -5496 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 3.413 1.091 2.704 2.854 8.898 1.964 4.201 0.488 3.296 2.394 1.004 3.413 3.308 1.273 1.696 1.678 1.429 2.116 1.008 1.479 2.783 0.969 1123 chr3 172232832 172244339 + 0 NA intron (NM_001190943, intron 1 of 1) intron (NM_001190943, intron 1 of 1) 2680 NM_001190943 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL tumor necrosis factor superfamily member 10 protein-coding 0.234 0.118 0.837 0.688 1.325 0.267 1.464 1.061 2.757 1.592 1.148 3.138 6.974 0.163 0.361 0.357 0.444 1.027 0.095 0.213 1.305 3.183 966 chr20 44399825 44421751 + 0 NA intron (NM_080614, intron 4 of 6) L2a|LINE|L2 9759 NM_080614 140686 Hs.419126 NM_080614 ENSG00000124116 WFDC3 WAP14|dJ447F3.3 WAP four-disulfide core domain 3 protein-coding 3.011 0.390 1.915 0.214 0.880 0.122 2.926 0.956 2.373 1.051 0.348 1.817 1.232 0.830 1.417 0.170 0.181 3.810 5.066 0.659 0.152 1.681 1322 chr6 34190833 34217921 + 0 NA promoter-TSS (NM_145903) promoter-TSS (NM_145903) -200 NM_001319079 3159 Hs.518805 NM_002131 ENSG00000137309 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding 1.475 1.180 2.337 0.947 1.916 1.337 3.118 0.638 1.691 1.336 0.879 2.210 5.435 1.602 1.271 0.628 0.511 3.588 3.542 2.232 0.622 3.101 992 chr20 58507767 58516943 + 0 NA 3' UTR (NM_006242, exon 1 of 1) 3' UTR (NM_006242, exon 1 of 1) 2997 NM_006242 5509 Hs.42215 NM_006242 ENSG00000132825 PPP1R3D PPP1R6 protein phosphatase 1 regulatory subunit 3D protein-coding 2.315 0.378 1.342 1.935 2.516 0.531 2.011 1.238 5.447 1.361 0.779 5.801 2.241 3.680 0.789 1.115 0.788 0.909 0.726 0.434 1.019 0.553 758 chr19 18389794 18394471 + 0 NA promoter-TSS (NR_036155) promoter-TSS (NR_036155) 334 NM_005354 3727 Hs.2780 NM_005354 ENSG00000130522 JUND AP-1 JunD proto-oncogene, AP-1 transcription factor subunit protein-coding 2.729 2.965 7.629 6.127 8.586 2.102 6.814 2.780 10.479 3.687 2.563 4.558 11.283 4.552 3.004 2.099 1.634 5.822 3.855 3.425 3.868 1.404 236 chr11 37522223 37528915 + 0 NA Intergenic Intergenic -434582 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LOC105376633 - uncharacterized LOC105376633 ncRNA 0.830 0.629 0.846 0.144 3.759 0.067 0.992 0.843 3.924 0.885 0.148 0.495 0.055 0.296 0.450 0.012 1.732 1.987 1.827 0.083 4.053 706 chr17 76991222 77006577 + 0 NA intron (NM_001159772, intron 1 of 5) intron (NM_001159772, intron 1 of 5) 7000 NM_001159773 124583 Hs.8859 NM_138793 ENSG00000171302 CANT1 DBQD|DBQD1|SCAN-1|SCAN1|SHAPY calcium activated nucleotidase 1 protein-coding 3.248 0.218 1.114 0.953 1.502 0.226 0.984 0.220 0.495 0.737 0.270 1.891 2.000 1.167 0.747 0.746 0.616 0.459 0.507 0.202 0.339 0.592 218 chr11 10828571 10832589 + 0 NA promoter-TSS (NM_001418) promoter-TSS (NM_001418) 2 NM_001418 1982 Hs.183684 NM_001418 ENSG00000110321 EIF4G2 AAG1|DAP5|NAT1|P97 eukaryotic translation initiation factor 4 gamma 2 protein-coding 5.605 2.034 5.615 4.115 7.655 3.924 5.006 1.634 7.778 8.980 1.110 10.827 6.722 5.460 2.799 2.404 2.348 4.369 2.514 2.877 3.136 1.921 1172 chr4 40312842 40337718 + 0 NA intron (NR_121640, intron 1 of 2) intron (NR_121640, intron 1 of 2) 6778 NR_121640 101060498 Hs.351492 NR_121640 ENSG00000249241 LOC101060498 - uncharacterized LOC101060498 ncRNA 0.748 0.085 0.403 0.086 3.084 0.171 0.757 0.035 0.147 0.861 0.343 0.731 0.755 0.388 0.737 0.052 0.068 0.134 0.064 0.169 0.052 0.186 14 chr1 9949520 9971936 + 0 NA intron (NM_020248, intron 1 of 5) intron (NM_020248, intron 1 of 5) 9588 NM_020248 56998 Hs.463759 NM_020248 ENSG00000178585 CTNNBIP1 ICAT catenin beta interacting protein 1 protein-coding 0.841 0.387 0.296 0.348 1.790 0.530 2.396 0.303 0.664 1.635 0.288 1.507 1.378 0.590 0.818 0.226 0.135 2.987 2.194 0.845 0.209 1.802 1259 chr5 142913204 142937748 + 0 NA Intergenic L1MEd|LINE|L1 -110399 NM_001018075 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 0.253 0.363 0.230 0.126 0.380 0.090 0.365 0.713 2.487 0.140 0.027 0.195 0.471 0.438 0.090 0.019 0.074 1.571 0.008 1.018 0.051 0.836 1608 chr9 136571660 136582769 + 0 NA intron (NM_001134707, intron 10 of 20) intron (NM_001134707, intron 10 of 20) 26265 NM_001134707 1757 Hs.198003 NM_007101 ENSG00000123453 SARDH BPR-2|DMGDHL1|SAR|SARD|SDH sarcosine dehydrogenase protein-coding 0.084 0.513 0.393 0.096 0.187 0.047 0.243 2.415 6.125 0.236 0.087 0.170 0.083 0.062 0.065 0.034 0.022 0.146 0.012 1.074 0.060 834 chr2 27393050 27408687 + 0 NA Intergenic Intergenic 28923 NM_175769 150921 Hs.591583 NM_175769 ENSG00000163792 TCF23 OUT|TCF-23|bHLHa24 transcription factor 23 protein-coding 0.144 0.016 0.125 4.527 0.205 0.088 0.106 0.061 0.130 0.281 0.022 0.122 0.218 0.081 0.139 0.833 1.031 0.022 0.017 0.096 4.549 0.054 285 chr11 113946921 113964564 + 0 NA intron (NM_001018011, intron 2 of 6) intron (NM_001018011, intron 2 of 6) 24454 NM_001018011 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 0.174 0.018 0.117 1.637 0.112 0.102 0.037 0.018 0.019 0.180 0.005 0.096 0.088 0.068 0.071 0.279 0.338 0.012 0.009 0.006 4.308 0.054 234 chr11 36529332 36532899 + 0 NA intron (NM_145803, intron 1 of 7) intron (NM_145803, intron 1 of 7) 748 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 2.117 1.319 1.220 1.516 22.705 1.316 1.743 0.709 2.010 4.072 5.920 4.209 4.675 2.379 0.818 0.901 0.721 1.070 0.483 1.779 0.356 0.664 594 chr17 7475201 7478087 + 0 NA intron (NM_001204510, intron 1 of 10) CpG 620 NM_001204510 1973 Hs.129673 NM_001416 ENSG00000161960 EIF4A1 DDX2A|EIF-4A|EIF4A|eIF-4A-I|eIF4A-I eukaryotic translation initiation factor 4A1 protein-coding 3.235 1.941 4.435 3.776 8.419 3.739 5.350 2.003 8.108 8.690 2.027 9.451 4.160 2.832 5.327 3.314 1.666 2.850 3.692 2.991 2.780 1.792 1438 chr7 96642163 96657366 + 0 NA TTS (NM_005221) TTS (NM_005221) 4379 NM_005221 1749 Hs.99348 NM_005221 ENSG00000105880 DLX5 SHFM1D distal-less homeobox 5 protein-coding 0.459 0.030 0.237 0.840 0.829 0.029 0.828 0.114 0.355 1.051 0.404 0.762 2.704 0.098 0.078 4.262 4.506 0.009 0.021 0.052 0.818 0.031 1216 chr5 34242220 34247141 + 0 NA Intergenic LTR12E|LTR|ERV1 -120047 NR_037951 100534612 Hs.171929 NR_037951 ENSG00000273294 C1QTNF3-AMACR - C1QTNF3-AMACR readthrough (NMD candidate) ncRNA 2.686 0.302 2.890 2.963 5.818 1.952 2.222 0.673 5.796 2.065 0.754 3.019 5.206 2.910 3.850 1.794 2.521 1.460 1.958 0.498 2.234 0.806 1135 chr3 179370202 179373198 + 0 NA intron (NM_003940, intron 1 of 20) intron (NM_003940, intron 1 of 20) 767 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 (isopeptidase T-3) protein-coding 1.126 0.855 1.871 7.964 8.931 1.188 5.205 1.936 7.112 10.544 3.114 7.267 11.136 3.437 2.369 4.739 3.602 2.095 0.720 0.974 4.046 1.312 1203 chr4 189906308 189911515 + 0 NA Intergenic Intergenic 532179 NR_033869 401164 Hs.435756 NR_033869 ENSG00000249378 LINC01060 - long intergenic non-protein coding RNA 1060 ncRNA 0.194 4.720 0.164 0.770 0.015 0.336 0.031 0.131 0.180 0.093 0.236 0.095 0.028 0.199 0.047 0.046 0.081 0.185 0.018 0.022 0.253 96 chr1 156468536 156476098 + 0 NA Intergenic Intergenic -1683 NM_005920 4209 Hs.314327 NM_005920 ENSG00000116604 MEF2D - myocyte enhancer factor 2D protein-coding 5.186 2.276 2.923 2.309 6.032 4.928 4.972 2.459 10.178 3.975 0.975 6.779 5.818 3.934 4.138 1.426 0.992 7.271 3.537 4.628 1.019 4.316 1068 chr3 46580316 46601781 + 0 NA intron (NM_024512, intron 2 of 8) intron (NM_024512, intron 2 of 8) -7840 NR_073385 83598 Hs.570630 NR_073385 ENSG00000268324 LRRC2-AS1 LUZP3|LUZP3P|LUZPP1 LRRC2 antisense RNA 1 ncRNA 0.129 1.029 0.144 0.040 0.331 0.047 0.444 1.198 3.700 0.203 0.026 0.184 0.082 0.590 0.149 0.040 0.044 0.945 0.047 2.561 0.016 0.572 486 chr15 71787595 71809735 + 0 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -40876 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 0.202 0.095 0.198 1.232 0.813 0.089 0.067 0.018 0.087 0.264 0.040 0.684 0.167 0.115 0.098 0.202 0.492 0.046 0.011 0.223 2.402 0.043 1354 chr6 100786377 100801944 + 0 NA Intergenic Intergenic 117391 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 single-minded family bHLH transcription factor 1 protein-coding 0.178 0.332 0.357 0.096 0.159 0.145 0.616 1.409 10.780 0.174 0.015 0.236 0.088 0.405 0.167 0.036 0.054 1.281 0.265 0.751 0.059 0.388 160 chr10 3816839 3835480 + 0 NA intron (NM_001300, intron 1 of 3) intron (NM_001300, intron 1 of 3) 1314 NM_001300 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 1.720 0.657 4.362 0.455 2.293 2.156 1.483 2.303 7.659 1.804 0.422 2.328 1.454 2.639 1.413 0.548 0.429 1.957 1.865 1.646 0.401 3.317 569 chr16 84165604 84179151 + 0 NA intron (NM_031463, intron 1 of 5) intron (NM_031463, intron 1 of 5) 6423 NM_031463 83693 Hs.555992 NM_031463 ENSG00000103160 HSDL1 SDR12C3 hydroxysteroid dehydrogenase like 1 protein-coding 0.660 0.175 0.494 6.886 0.913 0.876 0.944 0.116 0.504 0.732 0.251 0.848 0.880 0.442 0.316 1.373 1.429 0.210 0.195 0.132 3.758 0.202 8 chr1 7350571 7365354 + 0 NA intron (NM_015215, intron 5 of 22) L1MEc|LINE|L1 -473367 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 0.207 0.494 0.349 0.333 0.383 0.793 0.765 1.416 6.046 0.383 0.033 0.243 0.087 0.816 0.268 0.031 0.017 2.220 0.080 0.941 0.179 0.179 98 chr1 156735478 156738321 + 0 NA promoter-TSS (NM_005973) promoter-TSS (NM_005973) -375 NM_005973 5546 Hs.516948 NM_005973 ENSG00000143294 PRCC RCCP1|TPRC papillary renal cell carcinoma (translocation-associated) protein-coding 7.326 1.494 2.515 5.264 10.514 2.246 4.032 1.885 6.031 7.389 1.715 10.413 13.917 2.777 5.307 2.355 2.303 4.355 1.425 2.291 2.552 2.823 1278 chr5 174146654 174163880 + 0 NA intron (NM_002449, intron 1 of 1) intron (NM_002449, intron 1 of 1) 3692 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 0.136 0.014 1.156 0.317 1.793 2.294 0.327 0.099 0.139 0.667 0.256 0.341 2.148 0.378 0.326 4.355 3.911 0.028 0.051 0.013 0.219 0.023 1048 chr22 50246010 50250189 + 0 NA intron (NM_014838, intron 1 of 1) CpG 602 NM_014838 9889 Hs.475208 NM_014838 ENSG00000100426 ZBED4 - zinc finger BED-type containing 4 protein-coding 2.919 0.385 2.377 1.687 3.054 0.928 3.995 0.731 2.650 2.094 2.943 4.759 6.034 1.722 6.153 1.427 1.108 1.146 0.953 0.450 0.985 1.127 1381 chr7 2144119 2152320 + 0 NA intron (NM_001013836, intron 11 of 18) intron (NM_001013836, intron 11 of 18) 124364 NM_003550 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 MAD1 mitotic arrest deficient like 1 protein-coding 0.325 0.325 0.328 6.962 0.573 0.143 0.294 0.155 0.225 0.397 0.068 0.452 0.220 0.436 0.190 0.306 0.536 0.145 0.087 0.543 3.936 0.069 1000 chr21 33725086 33742073 + 0 NA intron (NM_014825, intron 12 of 38) intron (NM_014825, intron 12 of 38) 16052 NR_002996 677846 Hs.712293 NR_002996 ENSG00000200792 SNORA80A ACA67|SNORA80 small nucleolar RNA, H/ACA box 80A snoRNA 0.138 0.007 0.120 5.880 0.183 0.432 0.133 0.015 0.068 0.246 0.014 0.257 0.178 0.115 0.258 0.629 0.728 0.028 0.005 0.052 2.614 0.050 1061 chr3 24275576 24281828 + 0 NA intron (NM_000461, intron 2 of 9) intron (NM_000461, intron 2 of 9) 85887 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 0.203 0.178 2.861 0.086 0.269 0.146 0.220 0.224 1.099 0.222 0.158 0.485 0.325 0.172 0.633 0.042 0.058 1.620 0.161 0.356 0.129 3.822 43 chr1 40722003 40725519 + 0 NA promoter-TSS (NM_005857) promoter-TSS (NM_005857) 39 NM_005857 10269 Hs.132642 NM_005857 ENSG00000084073 ZMPSTE24 FACE-1|FACE1|HGPS|PRO1|STE24|Ste24p zinc metallopeptidase STE24 protein-coding 2.866 1.268 1.800 14.424 3.523 1.926 5.121 1.051 6.032 4.072 0.830 3.852 6.818 3.481 1.709 0.835 0.659 2.908 1.606 2.404 7.411 1.638 1396 chr7 20822122 20826565 + 0 NA exon (NM_182700, exon 2 of 2) exon (NM_182700, exon 2 of 2) 2165 NM_198956 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 1.185 0.111 0.241 0.674 1.305 0.222 0.319 0.036 0.196 0.968 0.644 0.955 3.194 0.239 3.933 2.405 2.804 0.114 0.102 0.204 0.063 686 chr17 60140505 60143867 + 0 NA intron (NM_005121, intron 1 of 29) intron (NM_005121, intron 1 of 29) 457 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 3.427 1.878 7.829 7.576 13.424 2.146 4.742 0.617 4.142 5.088 2.090 6.129 9.777 5.383 2.337 2.153 1.749 2.554 1.703 2.787 3.951 2.457 391 chr13 74773701 74795015 + 0 NA Intergenic Intergenic -21223 NR_144451 100507612 Hs.447508 NR_144451 LINC00402 - long intergenic non-protein coding RNA 402 ncRNA 0.203 0.064 0.081 0.090 0.138 0.111 0.035 0.719 3.226 0.222 0.063 0.147 0.072 0.108 0.054 0.029 0.056 0.045 0.006 0.146 0.038 0.018 943 chr20 23329700 23344275 + 0 NA TTS (NR_109884) TTS (NR_109884) 1777 NR_109884 100505683 Hs.140295 NR_109884 ENSG00000232645 LINC01431 - long intergenic non-protein coding RNA 1431 ncRNA 3.402 0.761 1.049 0.768 4.117 0.818 3.321 1.244 4.599 2.924 1.475 4.334 5.338 1.642 1.735 0.886 0.634 2.359 1.707 1.115 0.499 0.950 288 chr11 118867529 118870586 + 0 NA intron (NR_104051, intron 1 of 10) CpG 214 NR_104049 338657 Hs.534613 NM_198489 ENSG00000186166 CCDC84 DLNB14 coiled-coil domain containing 84 protein-coding 3.356 1.480 1.829 3.668 7.002 6.633 5.487 1.338 5.780 2.307 1.894 4.567 3.708 5.654 2.604 1.782 1.244 5.743 1.644 3.446 1.919 3.399 193 chr10 99159266 99175846 + 0 NA Intergenic Intergenic -6429 NM_001145114 23223 Hs.434251 NM_015179 ENSG00000052749 RRP12 KIAA0690 ribosomal RNA processing 12 homolog protein-coding 0.441 0.874 0.280 0.393 1.496 0.290 0.823 0.376 0.926 0.977 0.725 2.994 3.104 0.340 0.478 0.118 0.182 0.169 0.129 2.045 0.103 0.369 1555 chr9 16700654 16713466 + 0 NA intron (NM_001317940, intron 2 of 5) AluY|SINE|Alu 163726 NM_017637 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 0.191 1.189 2.139 0.122 0.063 0.459 0.195 1.218 10.457 0.089 0.038 0.067 0.187 0.799 0.382 0.036 0.095 2.180 0.007 2.659 0.135 0.074 119 chr1 202069870 202088626 + 0 NA Intergenic Intergenic -12781 NM_004767 9283 Hs.132049 NM_004767 ENSG00000170075 GPR37L1 ET(B)R-LP-2|ETBR-LP-2 G protein-coupled receptor 37 like 1 protein-coding 1.538 0.291 0.395 1.642 0.544 0.178 0.378 0.180 0.236 0.526 0.351 0.871 0.804 0.329 0.422 0.488 0.602 0.622 0.352 0.806 2.910 3.054 1375 chr6 157097411 157104269 + 0 NA promoter-TSS (NR_039676) promoter-TSS (NR_039676) 25 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 2.723 2.419 2.747 5.634 7.190 2.802 7.004 1.051 4.017 4.433 1.436 9.045 5.614 4.895 2.279 4.501 2.868 3.075 1.645 3.584 3.468 1.407 586 chr17 2288879 2311618 + 0 NA intron (NM_020310, intron 1 of 5) intron (NM_020310, intron 1 of 5) 4010 NM_020310 4335 Hs.626579 NM_020310 ENSG00000070444 MNT MAD6|MXD6|ROX|bHLHd3 MAX network transcriptional repressor protein-coding 2.201 1.060 1.814 1.401 3.328 1.158 2.036 0.360 1.604 2.235 0.672 3.477 4.066 1.937 1.613 0.840 0.572 2.295 1.596 1.427 0.850 1.314 180 chr10 50757659 50762006 + 0 NA Intergenic AluSg4|SINE|Alu -12248 NM_001277059 2074 Hs.49063 NM_000124 ENSG00000225830 ERCC6 ARMD5|CKN2|COFS|COFS1|CSB|POF11|RAD26|UVSS1 ERCC excision repair 6, chromatin remodeling factor protein-coding 0.095 2.534 0.435 0.049 0.257 0.940 1.365 0.375 1.383 0.678 0.279 0.373 1.028 0.290 0.265 0.004 0.084 0.483 0.863 7.727 0.016 1.454 1585 chr9 113680744 113686570 + 0 NA intron (NM_057159, intron 4 of 4) intron (NM_057159, intron 4 of 4) 116708 NM_001401 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 1.467 0.123 1.210 0.110 0.298 4.771 1.017 0.240 0.592 0.567 0.293 0.695 3.044 0.566 0.573 0.373 0.596 2.025 0.050 0.424 0.193 0.867 410 chr14 35866451 35886532 + 0 NA Intergenic Intergenic -2531 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 1.704 0.672 0.886 1.067 2.893 2.045 4.411 0.654 1.703 1.892 0.469 2.138 3.219 0.528 0.642 0.643 0.540 1.339 0.929 0.919 1.175 0.735 246 chr11 61531214 61540639 + 0 NA intron (NM_001127392, intron 3 of 26) intron (NM_001127392, intron 3 of 26) -10790 NR_026882 26070 Hs.564254 NR_026882 ENSG00000124915 DKFZP434K028 - uncharacterized LOC26070 ncRNA 0.213 2.049 0.179 0.170 0.246 0.068 0.109 0.099 0.044 0.178 0.092 0.244 0.191 0.066 0.066 0.041 0.088 0.129 0.062 4.086 0.046 0.150 999 chr21 27538554 27543133 + 0 NA intron (NM_001136131, intron 1 of 15) intron (NM_001136131, intron 1 of 15) 2295 NM_000484 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2 amyloid beta precursor protein protein-coding 1.993 1.376 6.391 3.864 4.230 3.037 3.551 1.163 3.142 2.621 1.022 4.950 3.470 3.221 1.707 2.585 2.729 1.880 1.170 2.604 3.406 0.844 690 chr17 66283303 66289609 + 0 NA intron (NM_001174166, intron 1 of 6) intron (NM_001174166, intron 1 of 6) 949 NM_004694 9120 Hs.42645 NM_004694 ENSG00000108932 SLC16A6 MCT6|MCT7 solute carrier family 16 member 6 protein-coding 0.974 0.530 1.035 0.373 1.209 5.337 1.982 0.299 0.893 1.020 1.287 3.834 3.874 0.665 0.694 1.355 1.130 0.398 0.706 0.650 0.037 0.074 1168 chr4 26320005 26324828 + 0 NA promoter-TSS (NM_015874) promoter-TSS (NM_015874) -13 NM_015874 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 3.275 1.130 1.843 2.416 3.177 1.377 6.722 0.844 6.244 1.502 1.087 2.374 3.016 2.365 4.903 2.004 2.132 4.691 1.353 1.770 1.382 3.269 61 chr1 87792839 87801340 + 0 NA intron (NM_006769, intron 1 of 4) intron (NM_006769, intron 1 of 4) 2938 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 2.533 1.803 1.638 1.969 4.697 1.120 5.170 0.890 4.436 1.184 0.494 2.982 6.320 2.980 1.062 3.271 2.673 2.236 1.221 3.072 2.002 2.042 1180 chr4 86654162 86669193 + 0 NA intron (NM_001025616, intron 3 of 9) intron (NM_001025616, intron 3 of 9) 18056 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 0.162 0.168 0.076 0.078 0.311 0.121 0.728 0.021 0.074 0.522 0.170 0.315 5.361 0.112 0.222 0.052 0.024 0.483 0.170 0.429 0.019 0.399 1185 chr4 100127745 100132122 + 0 NA exon (NM_001102470, exon 6 of 9) exon (NM_001102470, exon 6 of 9) 10470 NM_001102470 130 Hs.586161 NM_000672 ENSG00000172955 ADH6 ADH-5 alcohol dehydrogenase 6 (class V) protein-coding 0.288 2.177 0.048 0.137 0.346 0.018 0.043 0.016 0.214 0.038 0.086 0.099 0.066 0.165 0.062 7.079 0.032 430 chr14 62211527 62233229 + 0 NA Intergenic MSTB-int|LTR|ERVL-MaLR -4563 NR_144368 105370526 Hs.661638 NR_144368 LOC105370526 - uncharacterized LOC105370526 ncRNA 0.920 0.725 0.754 0.256 1.270 0.173 1.670 1.000 5.260 0.602 0.389 1.831 2.060 0.755 0.513 0.143 0.162 0.767 0.512 1.369 0.079 1.874 447 chr14 95064261 95069625 + 0 NA Intergenic MIR|SINE|MIR -11771 NM_001085 12 Hs.534293 NM_001085 ENSG00000196136 SERPINA3 AACT|ACT|GIG24|GIG25 serpin family A member 3 protein-coding 0.218 0.115 0.724 2.831 0.858 0.240 2.378 2.581 5.091 0.707 0.972 2.858 2.249 1.366 0.501 0.059 0.095 1.546 7.170 0.746 0.983 0.289 1446 chr7 101446739 101467447 + 0 NA Intergenic Intergenic -2091 NM_001913 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 0.975 0.871 0.617 0.778 4.993 0.687 0.784 0.414 0.887 2.131 0.622 3.315 2.650 1.492 0.384 1.004 0.615 0.557 0.675 1.195 0.374 0.218 536 chr16 23152008 23165012 + 0 NA intron (NM_020718, intron 1 of 15) AluSp|SINE|Alu 2081 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 0.469 0.571 0.371 0.617 1.957 0.315 1.443 0.199 0.423 1.168 0.766 3.568 2.000 0.732 0.240 0.221 0.166 0.250 0.104 0.820 0.248 0.141 1315 chr6 30880695 30884262 + 0 NA TTS (NM_001517) TTS (NM_001517) 370 NM_001167734 57176 Hs.597526 NM_020442 ENSG00000137411 VARS2 COXPD20|VALRS|VARS2L|VARSL valyl-tRNA synthetase 2, mitochondrial protein-coding 2.024 0.417 2.865 1.586 4.903 1.348 3.282 1.098 2.556 1.818 1.520 11.471 7.816 1.432 0.875 0.525 0.479 1.159 0.330 0.592 0.740 2.027 1130 chr3 177305295 177350564 + 0 NA intron (NR_047568, intron 2 of 3) MER4D1|LTR|ERV1 168220 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 1.587 0.101 0.357 4.670 2.758 0.106 0.527 0.452 0.828 3.138 2.128 2.932 6.299 0.128 0.289 0.973 1.652 0.097 0.187 0.231 9.301 0.331 415 chr14 38015629 38039965 + 0 NA Intergenic L1PA3|LINE|L1 36528 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 2.574 0.005 0.201 0.062 0.568 0.078 1.649 0.003 0.107 0.228 0.053 3.080 0.300 0.054 0.246 0.025 0.059 0.036 0.207 0.060 0.033 0.075 1266 chr5 154652300 154655910 + 0 NA Intergenic Intergenic 260790 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 0.059 0.034 0.143 1.925 0.114 0.041 0.071 0.046 0.057 0.072 0.068 0.101 0.614 0.052 3.449 4.697 0.019 0.012 0.032 3.155 0.076 189 chr10 81962814 81969133 + 0 NA promoter-TSS (NM_145869) promoter-TSS (NM_145869) -540 NM_001278407 311 Hs.530291 NM_001157 ENSG00000122359 ANXA11 ANX11|CAP50 annexin A11 protein-coding 4.928 2.460 5.702 0.592 6.126 5.403 4.779 1.124 4.639 1.113 1.800 9.721 2.749 3.627 3.343 0.776 0.577 3.223 3.622 4.792 0.292 4.640 1292 chr6 13347125 13364657 + 0 NA Intergenic Intergenic -27076 NM_001258457 51256 Hs.484678 NM_016495 ENSG00000145979 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family member 7 protein-coding 0.267 0.170 0.209 0.510 0.361 0.634 0.143 0.965 3.668 1.902 1.915 0.587 5.344 0.111 0.282 0.112 0.221 0.623 0.046 0.386 0.349 0.092 1356 chr6 106185556 106213081 + 0 NA Intergenic L1MA3|LINE|L1 -334877 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 0.206 0.018 0.089 1.672 0.202 0.102 0.161 0.015 0.054 0.306 0.110 0.181 0.169 0.086 0.160 0.772 1.335 0.064 0.017 0.049 2.448 0.165 480 chr15 67221896 67225750 + 0 NA TTS (NR_135687) TTS (NR_135687) 25030 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LOC102723481 - uncharacterized LOC102723481 ncRNA 1.440 0.353 6.946 0.083 1.223 2.623 1.027 0.285 0.730 0.333 0.470 1.677 0.112 0.467 1.701 0.020 0.157 2.861 4.112 0.487 0.120 1.284 1153 chr3 189644591 189680775 + 0 NA Intergenic Intergenic 114972 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 0.939 0.137 0.596 0.284 nan 0.068 0.621 0.607 0.826 5.028 3.529 1.612 11.109 0.133 0.296 0.112 0.227 0.360 0.586 0.312 0.221 0.928 438 chr14 69010352 69022409 + 0 NA intron (NM_001321818, intron 10 of 10) AluYg6|SINE|Alu 79124 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 1.089 1.565 0.213 0.097 6.746 0.520 2.842 1.427 1.828 1.286 0.053 2.241 0.499 0.747 0.691 0.085 0.130 4.398 0.679 3.674 0.101 0.997 107 chr1 164733553 164738665 + 0 NA intron (NM_001204963, intron 2 of 8) AluSx3|SINE|Alu 7769 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 0.271 2.954 0.207 0.125 0.279 1.043 1.897 1.337 6.022 0.507 0.113 0.993 0.451 1.024 0.979 0.060 0.140 5.792 0.200 8.387 0.068 2.966 87 chr1 154939628 154950524 + 0 NA intron (NM_001130041, intron 1 of 12) intron (NM_001130041, intron 1 of 12) -1853 NM_183001 6464 Hs.433795 NM_003029 ENSG00000160691 SHC1 SHC|SHCA SHC adaptor protein 1 protein-coding 2.587 2.284 2.452 3.318 7.794 3.777 3.880 1.620 7.020 4.490 1.785 7.948 13.021 4.084 3.843 1.467 1.377 5.973 2.234 5.082 1.919 4.486 1022 chr21 47282270 47301111 + 0 NA intron (NM_001130141, intron 1 of 12) intron (NM_001130141, intron 1 of 12) 21815 NM_020528 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3 poly(rC) binding protein 3 protein-coding 0.079 0.138 0.140 0.091 0.073 0.061 0.211 2.220 6.650 0.183 0.090 0.365 0.053 0.119 0.050 0.037 0.021 1.029 0.002 0.376 0.012 0.025 1458 chr7 148840478 148848958 + 0 NA 5' UTR (NM_170686, exon 1 of 6) 5' UTR (NM_170686, exon 1 of 6) 158 NM_170686 57541 Hs.632032 NM_020781 ENSG00000197024 ZNF398 P51|P71|ZER6 zinc finger protein 398 protein-coding 5.162 0.307 2.160 1.193 2.555 0.826 0.933 0.343 1.199 5.548 1.178 3.679 5.831 2.398 1.523 0.515 0.344 0.456 0.554 0.265 0.312 2.794 444 chr14 81684591 81689526 + 0 NA promoter-TSS (NR_135252) promoter-TSS (NR_135252) 238 NM_001278940 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 4.830 1.096 5.733 4.073 7.623 3.431 3.969 2.345 12.947 6.514 1.782 9.024 10.830 1.769 4.008 2.172 1.694 2.926 3.366 1.332 3.286 2.812 508 chr15 93424092 93432468 + 0 NA intron (NR_037601, intron 2 of 5) intron (NR_037601, intron 2 of 5) 1754 NR_037602 100507217 Hs.622504 NR_037600 LINC01578 - long intergenic non-protein coding RNA 1578 ncRNA 2.135 1.867 3.423 4.953 9.952 2.415 2.877 0.922 4.629 4.693 1.159 6.014 5.139 2.337 2.211 1.765 1.389 2.718 0.876 3.034 4.455 1.349 953 chr20 32375758 32386146 + 0 NA TTS (NM_001282933) TTS (NM_001282933) 17953 NR_110623 101929746 Hs.504633 NR_110623 ENSG00000230753 ZNF341-AS1 - ZNF341 antisense RNA 1 ncRNA 4.409 0.286 1.221 0.175 0.739 0.072 1.202 0.485 1.298 0.468 0.225 1.904 0.550 0.275 0.991 0.045 0.129 0.582 3.011 0.790 0.088 3.297 1336 chr6 44622855 44650957 + 0 NA Intergenic MARNA|DNA|TcMar-Mariner -117288 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 0.136 0.057 0.198 0.095 0.486 0.027 0.107 0.775 1.843 0.786 3.885 0.700 0.907 0.177 0.136 0.061 0.078 0.065 0.025 0.111 0.053 0.085 221 chr11 11862477 11866710 + 0 NA intron (NM_017944, intron 1 of 26) intron (NM_017944, intron 1 of 26) 1623 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 4.655 1.316 2.801 3.840 4.835 3.079 4.240 1.571 6.979 8.210 0.942 5.872 4.918 6.427 1.976 1.753 1.801 3.243 1.994 3.039 2.682 1.917 39 chr1 33803440 33816719 + 0 NA intron (NM_001330488, intron 7 of 12) intron (NM_001330488, intron 7 of 12) 5420 NM_004427 1912 Hs.524271 NM_004427 ENSG00000134686 PHC2 EDR2|HPH2|PH2 polyhomeotic homolog 2 protein-coding 0.802 1.753 2.087 1.294 0.917 1.830 3.228 0.465 1.542 0.657 0.255 3.092 1.134 1.480 1.988 0.574 0.461 3.140 3.001 3.586 0.938 2.061 1424 chr7 73865450 73870677 + 0 NA promoter-TSS (NM_016328) promoter-TSS (NM_016328) -57 NM_005685 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 2.965 2.194 2.360 1.657 4.588 1.805 4.292 0.585 1.298 2.396 1.071 4.133 4.232 8.905 0.932 2.414 1.668 2.475 1.674 4.023 0.986 2.042 1560 chr9 35069414 35081175 + 0 NA exon (NM_004629, exon 11 of 14) exon (NM_004629, exon 11 of 14) -2555 NM_007126 7415 Hs.529782 NM_007126 ENSG00000165280 VCP ALS14|CMT2Y|HEL-220|HEL-S-70|IBMPFD|IBMPFD1|TERA|p97 valosin containing protein protein-coding 1.625 0.453 1.380 2.026 2.945 1.000 0.964 0.424 2.498 3.456 0.719 2.558 6.452 2.034 1.124 1.327 0.874 1.153 0.689 0.576 1.199 0.791 1089 chr3 114361934 114371603 + 0 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) -22976 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 0.286 0.166 0.183 0.141 0.189 0.038 0.172 0.025 0.163 0.145 0.025 0.437 0.160 0.058 0.151 0.008 0.176 1.017 2.522 0.449 0.190 6.843 558 chr16 67595299 67598527 + 0 NA intron (NM_006565, intron 1 of 11) CpG 603 NM_006565 10664 Hs.368367 NM_006565 ENSG00000102974 CTCF MRD21 CCCTC-binding factor protein-coding 4.960 1.686 5.300 6.749 14.126 4.451 5.569 1.980 7.363 9.919 3.014 9.742 13.543 4.528 2.785 3.239 1.804 3.308 5.865 3.895 4.314 2.622 417 chr14 39637880 39646011 + 0 NA Intergenic AluSz|SINE|Alu -2311 NM_001079537 122553 Hs.13303 NM_177452 ENSG00000182400 TRAPPC6B TPC6 trafficking protein particle complex 6B protein-coding 4.966 1.338 2.876 2.382 8.852 2.423 5.769 0.948 5.721 4.281 0.948 3.676 7.753 0.852 2.815 1.171 0.968 2.710 2.985 1.764 1.419 1.852 12 chr1 8608097 8624415 + 0 NA intron (NM_012102, intron 7 of 23) intron (NM_012102, intron 7 of 23) -61283 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 0.230 0.038 0.119 3.262 0.253 0.140 0.086 0.062 0.211 0.340 0.039 0.121 0.374 0.151 0.128 0.414 0.551 0.094 0.031 0.109 3.535 0.098 1554 chr9 16623426 16630233 + 0 NA intron (NM_001317940, intron 2 of 5) intron (NM_001317940, intron 2 of 5) 243957 NM_017637 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 0.460 0.146 0.342 0.047 0.058 0.078 0.069 1.424 8.328 0.027 0.056 0.148 0.123 0.338 0.034 0.124 1.016 0.240 0.051 0.014 784 chr19 39888389 39905698 + 0 NA promoter-TSS (NM_003407) promoter-TSS (NM_003407) -444 NM_003407 7538 Hs.534052 NM_003407 ENSG00000128016 ZFP36 G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36 ZFP36 ring finger protein protein-coding 4.915 1.095 13.832 1.576 2.765 1.808 3.434 0.926 2.445 4.247 2.366 5.780 7.260 2.920 2.294 0.943 0.811 2.289 2.172 1.680 0.877 2.403 260 chr11 64083511 64093762 + 0 NA intron (NM_181652, intron 3 of 3) intron (NM_181652, intron 3 of 3) 3076 NM_181652 25824 Hs.502823 NM_012094 ENSG00000126432 PRDX5 ACR1|AOEB166|B166|HEL-S-55|PLP|PMP20|PRDX6|PRXV|SBBI10|prx-V peroxiredoxin 5 protein-coding 1.808 0.966 1.231 2.313 3.474 1.048 1.904 0.585 1.981 2.532 1.563 6.496 5.113 1.479 1.305 0.974 0.732 1.501 1.763 1.116 1.212 0.921 573 chr16 86696519 86700584 + 0 NA Intergenic LTR16A2|LTR|ERVL 57014 NR_135181 101928614 Hs.399823 NR_135181 ENSG00000260026 LOC101928614 - uncharacterized LOC101928614 ncRNA 0.374 0.760 8.653 0.136 0.784 0.355 3.794 1.913 4.932 1.653 0.565 4.037 0.930 0.597 1.765 0.020 0.029 6.581 6.048 1.672 0.015 3.581 1084 chr3 71471457 71498106 + 0 NA intron (NM_001012505, intron 3 of 6) (GGGA)n|Simple_repeat|Simple_repeat 106459 NR_031697 100302112 NR_031697 ENSG00000221264 MIR1284 MIRN1284|hsa-mir-1284|mir-1284 microRNA 1284 ncRNA 0.214 0.103 0.164 0.076 3.287 0.043 0.774 0.059 0.111 0.300 0.329 1.263 1.935 0.143 0.255 0.455 0.610 0.071 0.025 0.264 0.069 0.044 1530 chr8 144947242 144965883 + 0 NA Intergenic Intergenic -3930 NM_031308 83481 Hs.200412 NM_031308 ENSG00000261150 EPPK1 EPIPL|EPIPL1 epiplakin 1 protein-coding 0.481 0.159 0.118 0.171 7.345 0.058 0.403 0.163 0.067 0.896 0.872 1.572 0.489 0.181 0.134 0.342 0.284 0.007 0.040 0.132 0.081 0.081 1144 chr3 185813149 185828467 + 0 NA intron (NM_004454, intron 5 of 12) intron (NM_004454, intron 5 of 12) 6093 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 0.869 0.227 2.699 10.325 nan 0.618 1.560 0.051 0.143 1.361 1.567 4.705 5.442 0.249 0.818 2.275 2.584 1.092 0.666 0.451 5.353 0.575 762 chr19 21290775 21308960 + 0 NA exon (NM_182515, exon 5 of 5) exon (NM_182515, exon 5 of 5) -24946 NM_001319124 170959 Hs.156256 NM_133473 ENSG00000196705 ZNF431 - zinc finger protein 431 protein-coding 0.112 0.177 0.163 0.024 0.236 0.008 0.239 0.533 3.370 0.149 0.018 0.091 0.102 0.350 0.033 0.009 0.027 0.123 0.002 0.551 0.006 1.577 638 chr17 38802974 38805349 + 0 NA promoter-TSS (NM_003079) promoter-TSS (NM_003079) -58 NM_003079 6605 Hs.743978 NM_003079 ENSG00000073584 SMARCE1 BAF57|CSS5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding 6.455 2.764 5.365 6.959 12.379 8.153 9.532 1.697 7.464 11.528 3.008 9.754 12.219 7.261 3.129 4.422 4.016 4.061 3.220 2.797 4.496 2.351 734 chr18 72915598 72924541 + 0 NA intron (NM_175907, intron 1 of 1) CpG 1234 NM_175907 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 2.310 0.512 1.921 1.736 1.627 0.920 1.331 0.309 2.277 1.546 0.849 1.358 2.064 1.657 0.991 3.799 2.784 2.055 2.725 0.561 1.263 0.865 875 chr2 119598204 119606155 + 0 NA intron (NM_001426, intron 1 of 1) intron (NM_001426, intron 1 of 1) 3580 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 0.107 0.047 0.112 0.498 3.157 0.029 3.143 0.039 0.180 11.213 0.615 0.440 1.418 0.035 0.182 0.039 0.014 0.086 0.036 1522 chr8 128855057 128952650 + 0 NA intron (NR_003367, intron 2 of 8) intron (NR_003367, intron 2 of 8) 57116 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 34.563 1.108 0.433 1.093 1.954 1.193 5.979 0.637 1.855 0.809 0.317 1.136 1.965 0.844 0.838 0.322 0.358 1.342 1.805 2.368 0.569 0.796 1 chr1 954659 961541 + 0 NA intron (NM_198576, intron 2 of 35) intron (NM_198576, intron 2 of 35) 2597 NM_001305275 375790 Hs.273330 NM_198576 ENSG00000188157 AGRN CMS8|CMSPPD agrin protein-coding 2.051 2.858 1.487 0.606 5.813 0.958 1.619 0.318 2.010 3.259 1.935 6.796 2.643 2.199 1.865 0.906 0.333 6.045 1.739 5.132 0.600 2.357 506 chr15 85290012 85294804 + 0 NA intron (NM_014630, intron 1 of 10) intron (NM_014630, intron 1 of 10) 590 NM_014630 9640 Hs.79347 NM_014630 ENSG00000166716 ZNF592 CAMOS|SCAR5 zinc finger protein 592 protein-coding 2.479 1.938 5.907 4.076 5.197 3.050 3.455 1.073 3.499 4.853 0.950 5.290 4.312 2.872 1.501 2.982 1.946 2.181 1.530 2.622 1.585 0.779 136 chr1 226295241 226317714 + 0 NA Intergenic Intergenic 56049 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 2.558 0.099 0.559 0.757 2.442 0.288 0.786 0.283 0.612 1.601 1.258 5.532 2.783 0.726 1.182 1.117 0.690 0.371 0.392 0.114 0.493 1.668 116 chr1 197880490 197893697 + 0 NA exon (NM_020204, exon 1 of 5) exon (NM_020204, exon 1 of 5) 576 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 0.257 0.038 0.102 0.146 5.941 0.052 0.154 0.149 0.478 0.395 0.170 0.349 0.165 0.100 0.307 0.137 0.185 0.041 0.007 0.067 0.017 0.107 1197 chr4 169400216 169410290 + 0 NA Intergenic AluSx|SINE|Alu -3588 NM_001012967 91351 Hs.535011 NM_001012967 ENSG00000181381 DDX60L - DEAD-box helicase 60-like protein-coding 0.764 1.172 1.798 0.180 2.001 0.409 3.287 1.210 6.567 0.674 0.111 1.979 0.998 2.110 0.992 0.140 0.146 6.356 1.577 2.983 0.217 6.481 144 chr1 235487731 235504732 + 0 NA intron (NR_036605, intron 1 of 2) AluSx1|SINE|Alu 4362 NR_036605 9453 Hs.730768 NM_004837 ENSG00000152904 GGPS1 GGPPS|GGPPS1 geranylgeranyl diphosphate synthase 1 protein-coding 2.057 0.350 0.935 2.252 5.126 0.699 1.180 0.381 2.520 1.588 0.873 2.647 4.377 1.529 1.310 1.026 0.942 0.786 0.368 0.609 1.433 1.631 1580 chr9 109622288 109627687 + 0 NA promoter-TSS (NM_001347997) promoter-TSS (NM_001347997) -391 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 Zfp462 zinc finger protein 462 protein-coding 1.755 1.537 3.722 5.227 6.961 1.075 6.755 1.897 5.869 3.110 4.883 6.062 9.477 2.703 2.134 4.070 4.828 4.048 0.762 2.574 4.506 1.972 1440 chr7 98969983 98979832 + 0 NA intron (NM_005720, intron 1 of 9) AluJr4|SINE|Alu 2609 NM_005720 10095 Hs.489284 NM_005720 ENSG00000130429 ARPC1B ARC41|p40-ARC|p41-ARC actin related protein 2/3 complex subunit 1B protein-coding 2.656 1.044 1.795 0.769 1.882 0.928 1.329 0.336 1.109 1.365 0.414 2.738 2.323 3.566 0.577 0.666 0.294 1.616 0.830 1.885 0.304 0.687 661 chr17 46618208 46642593 + 0 NA intron (NM_002146, intron 2 of 3) intron (NM_002146, intron 2 of 3) -8007 NM_002145 3212 Hs.514289 NM_002145 ENSG00000173917 HOXB2 HOX2|HOX2H|Hox-2.8|K8 homeobox B2 protein-coding 3.193 0.731 0.950 0.158 0.278 0.312 0.179 0.155 0.336 0.208 0.081 0.456 0.425 0.160 0.231 0.195 0.180 0.072 0.009 1.132 0.084 0.039 381 chr13 41234240 41242058 + 0 NA intron (NM_002015, intron 1 of 2) AluSc5|SINE|Alu 2585 NM_002015 2308 Hs.370666 NM_002015 ENSG00000150907 FOXO1 FKH1|FKHR|FOXO1A forkhead box O1 protein-coding 1.848 0.222 1.096 0.492 1.127 0.900 2.777 0.182 0.651 1.295 1.049 5.474 4.494 0.869 1.122 1.567 1.068 0.320 0.043 0.273 0.191 0.109 1471 chr8 29197409 29211121 + 0 NA intron (NM_057158, intron 1 of 4) intron (NM_057158, intron 1 of 4) 2057 NM_057158 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 4.462 0.605 5.615 0.382 4.635 3.324 0.541 0.223 0.476 0.196 0.389 1.988 0.494 1.326 1.655 2.125 1.798 1.078 0.742 0.879 0.407 0.268 581 chr16 89380461 89399553 + 0 NA intron (NM_001242885, intron 2 of 2) G-rich|Low_complexity|Low_complexity 2466 NM_001242885 100287036 Hs.656995 NM_001242885 LOC100287036 - uncharacterized LOC100287036 protein-coding 1.585 0.519 2.216 0.890 1.199 2.466 2.893 0.520 1.407 1.556 0.718 3.939 1.748 0.620 1.035 0.369 0.322 1.872 3.221 1.016 0.557 0.795 308 chr12 6975837 6983463 + 0 NA TTS (NM_001146316) TTS (NM_001146316) 2372 NM_001258026 7167 Hs.524219 NM_000365 ENSG00000111669 TPI1 HEL-S-49|TIM|TPI|TPID triosephosphate isomerase 1 protein-coding 3.741 1.007 1.835 2.606 3.646 2.155 5.711 0.384 2.277 5.238 1.486 7.075 8.431 2.435 1.944 1.753 1.340 2.329 1.406 1.253 1.130 1.438 906 chr2 200294432 200328731 + 0 NA intron (NR_134967, intron 2 of 4) intron (NR_134967, intron 2 of 4) 11238 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 0.836 0.116 0.593 5.419 1.699 0.601 2.366 0.290 1.269 0.422 0.223 0.647 2.276 0.903 0.782 1.308 1.164 0.533 0.181 0.127 4.955 0.256 1349 chr6 99074298 99093417 + 0 NA Intergenic Intergenic -198723 NM_005604 5454 Hs.182505 NM_005604 ENSG00000184486 POU3F2 BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7 POU class 3 homeobox 2 protein-coding 0.251 0.016 0.057 7.726 0.142 0.055 0.053 0.021 0.065 0.107 0.098 0.257 0.160 0.120 0.207 0.360 0.245 0.002 0.054 7.460 0.020 177 chr10 35046670 35051284 + 0 NA intron (NM_001184785, intron 1 of 24) intron (NM_001184785, intron 1 of 24) 55276 NM_001184791 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.944 0.215 0.578 0.070 0.710 0.314 0.327 0.223 0.523 0.784 0.249 1.358 2.251 0.216 0.729 0.106 0.561 0.509 0.218 0.051 5.141 678 chr17 56062234 56067204 + 0 NA intron (NM_001330393, intron 1 of 6) intron (NM_001330393, intron 1 of 6) 896 NM_007146 7716 Hs.463569 NM_007146 ENSG00000136451 VEZF1 DB1|ZNF161 vascular endothelial zinc finger 1 protein-coding 3.443 1.271 6.833 3.243 6.189 3.258 6.352 1.151 5.158 2.476 1.430 5.455 6.805 4.891 4.975 1.923 1.293 6.106 2.304 2.453 2.152 2.889 1517 chr8 128201407 128325121 + 0 NA intron (NR_117099, intron 1 of 3) MIRb|SINE|MIR 6382 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLo-2|LINC01244 cancer susceptibility candidate 21 (non-protein coding) ncRNA 0.366 0.163 0.774 1.585 8.941 0.067 0.695 0.112 0.236 1.956 1.353 2.561 9.338 0.135 0.192 0.125 0.211 0.490 0.752 0.391 1.227 1.458 373 chr12 120963001 120989236 + 0 NA intron (NM_014868, intron 1 of 16) intron (NM_014868, intron 1 of 16) 3985 NM_001330474 9921 Hs.442798 NM_014868 ENSG00000022840 RNF10 RIE2 ring finger protein 10 protein-coding 0.917 0.566 0.684 1.125 2.381 1.100 2.183 0.214 1.071 0.946 0.261 1.845 2.066 0.971 1.600 0.537 0.628 1.015 0.580 1.213 0.574 1.138 773 chr19 37956974 37961029 + 0 NA promoter-TSS (NM_001321992) promoter-TSS (NM_001321992) 327 NM_001300993 148268 Hs.126962 NM_144694 ENSG00000171827 ZNF570 - zinc finger protein 570 protein-coding 0.480 0.275 8.325 2.881 3.267 1.681 5.769 1.701 5.669 0.764 0.397 0.033 1.602 3.754 1.607 0.327 0.206 0.184 0.094 0.110 1.032 1.328 1247 chr5 134650914 134668721 + 0 NA intron (NM_001277348, intron 3 of 5) intron (NM_001277348, intron 3 of 5) 75111 NM_138610 9555 Hs.420272 NM_004893 ENSG00000113648 H2AFY H2A.y|H2A/y|H2AF12M|MACROH2A1.1|mH2A1|macroH2A1.2 H2A histone family member Y protein-coding 0.251 0.044 0.274 2.477 0.275 0.145 0.175 0.023 0.054 0.184 0.076 0.223 0.304 0.153 0.109 0.646 0.843 0.112 0.014 0.075 3.415 0.080 205 chr10 134477414 134483756 + 0 NA intron (NM_005539, intron 4 of 15) intron (NM_005539, intron 4 of 15) -14194 NM_001321042 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 0.936 0.469 1.450 0.051 1.455 1.030 3.373 0.209 0.370 0.191 0.051 7.318 0.115 0.321 2.820 0.039 2.844 3.337 0.965 2.116 22 chr1 23151811 23160167 + 0 NA intron (NM_017449, intron 3 of 15) intron (NM_017449, intron 3 of 15) 33730 NR_036214 100422914 NR_036214 ENSG00000264014 MIR4253 - microRNA 4253 ncRNA 2.214 0.207 0.287 0.090 2.087 0.281 0.965 0.436 0.870 2.194 1.415 5.720 3.917 0.334 1.183 0.082 0.087 1.436 4.089 0.239 0.022 2.123 927 chr2 235580625 235602633 + 0 NA intron (NR_132376, intron 1 of 2) (TGG)n|Simple_repeat|Simple_repeat 317 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 0.416 0.259 0.711 4.203 0.492 0.664 0.987 0.271 0.315 0.517 1.889 1.482 0.515 0.343 0.603 1.531 2.122 1.080 0.044 0.563 5.541 0.429 1309 chr6 23133535 23140528 + 0 NA Intergenic L1MA4|LINE|L1 -418878 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 0.152 0.109 0.015 0.079 0.065 0.041 0.033 0.127 0.147 0.011 0.026 0.086 0.052 0.061 1.910 3.480 0.029 0.006 0.064 0.114 0.020 1576 chr9 101003700 101026266 + 0 NA intron (NM_018421, intron 1 of 12) intron (NM_018421, intron 1 of 12) 3020 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 0.701 1.087 0.487 0.242 4.808 0.993 1.905 1.105 3.237 1.864 1.733 2.345 6.389 1.638 0.435 0.565 0.547 3.417 0.375 2.246 0.198 0.814 301 chr12 1099038 1101462 + 0 NA promoter-TSS (NR_027949) promoter-TSS (NR_027949) -124 NR_027949 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 3.968 3.981 2.233 8.688 8.137 4.742 8.781 1.041 4.076 8.853 3.638 7.367 11.536 4.892 3.898 4.637 2.347 6.061 3.581 4.918 4.134 0.272 51 chr1 55257981 55268262 + 0 NA intron (NM_017904, intron 1 of 5) AluSq2|SINE|Alu 3820 NM_001114108 55001 Hs.16230 NM_017904 ENSG00000006555 TTC22 - tetratricopeptide repeat domain 22 protein-coding 2.674 0.060 0.213 0.104 0.862 0.067 0.077 0.039 0.080 1.635 0.816 2.042 11.426 0.124 0.126 0.061 0.082 0.033 0.914 0.087 0.066 0.303 1622 chrX 12991589 13012316 + 0 NA Intergenic Intergenic 8726 NM_021109 7114 Hs.437277 NM_021109 ENSG00000205542 TMSB4X FX|PTMB4|TB4X|TMSB4 thymosin beta 4, X-linked protein-coding 2.105 0.191 2.233 4.210 1.547 0.849 1.911 0.704 2.401 2.544 0.346 1.495 0.845 0.776 0.854 0.373 0.355 1.298 1.341 0.280 2.759 0.615 1260 chr5 148922237 148944685 + 0 NA Intergenic AluSx|SINE|Alu -2346 NM_001892 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 1.660 0.684 2.016 3.430 4.569 1.380 1.974 0.599 2.290 2.339 1.021 2.864 4.128 2.235 1.033 0.882 1.023 1.710 1.546 1.284 2.464 1.320 456 chr14 103587090 103596371 + 0 NA promoter-TSS (NM_006291) promoter-TSS (NM_006291) -934 NM_006291 7127 Hs.525607 NM_006291 ENSG00000185215 TNFAIP2 B94|EXOC3L3 TNF alpha induced protein 2 protein-coding 0.341 0.694 0.595 3.341 0.653 1.789 0.988 0.664 1.325 0.620 0.909 5.975 3.922 1.949 1.561 2.226 1.344 1.057 2.180 0.761 4.058 0.984 874 chr2 114290794 114300580 + 0 NA intron (NR_121186, intron 1 of 2) AluSz6|SINE|Alu 4563 NR_121190 101929127 Hs.552787 NR_121188 ENSG00000277631 PGM5P3-AS1 FAM233B PGM5P3 antisense RNA 1 ncRNA 0.262 0.089 0.181 0.142 0.361 0.008 0.133 0.601 1.966 0.238 0.117 0.164 0.183 0.123 0.455 0.153 0.110 2.220 0.004 0.200 0.048 3.316 652 chr17 42294466 42301942 + 0 NA promoter-TSS (NM_001076683) promoter-TSS (NM_001076683) 46 NM_001076683 7343 Hs.89781 NM_014233 ENSG00000108312 UBTF NOR-90|UBF|UBF-1|UBF1|UBF2 upstream binding transcription factor, RNA polymerase I protein-coding 3.556 1.888 3.496 4.092 6.047 2.503 6.786 0.875 4.363 4.580 2.000 9.377 10.297 3.230 2.213 4.245 2.306 3.410 1.954 2.156 2.373 1.467 975 chr20 49546077 49549149 + 0 NA promoter-TSS (NR_110009) promoter-TSS (NR_110009) 92 NR_110007 101927631 Hs.301898 NR_110007 ENSG00000259456 ADNP-AS1 - ADNP antisense RNA 1 ncRNA 7.613 2.539 4.691 5.189 10.474 2.043 7.194 3.479 9.889 6.610 3.636 15.023 10.822 8.503 4.211 4.326 3.189 3.817 3.022 2.952 4.095 3.010 493 chr15 72765348 72768726 + 0 NA promoter-TSS (NR_135678) promoter-TSS (NR_135678) 370 NM_005744 25820 Hs.268787 NM_005744 ENSG00000166233 ARIH1 ARI|HARI|HHARI|UBCH7BP ariadne RBR E3 ubiquitin protein ligase 1 protein-coding 3.595 3.608 4.926 4.504 10.505 4.253 4.481 1.602 6.584 5.544 1.733 7.981 5.468 4.447 2.841 3.672 2.289 3.910 1.915 4.139 3.502 1.935 1436 chr7 96549590 96553045 + 0 NA Intergenic Intergenic -83973 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 0.243 0.154 1.021 5.403 0.045 0.174 0.046 0.019 3.262 2.258 3.667 7.301 0.074 0.089 1.799 4.104 0.020 0.032 3.190 0.054 1033 chr22 31738518 31744342 + 0 NA exon (NM_032050, exon 1 of 4) exon (NM_032050, exon 1 of 4) 819 NM_032050 23598 Hs.731398 NM_014323 ENSG00000100105 PATZ1 MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23 POZ/BTB and AT hook containing zinc finger 1 protein-coding 6.533 0.404 2.269 1.881 2.613 1.106 2.522 0.635 2.688 3.102 0.823 5.252 7.005 1.715 2.151 3.105 2.255 0.815 1.827 0.591 1.103 2.240 1591 chr9 123441992 123478002 + 0 NA intron (NM_001080497, intron 1 of 5) intron (NM_001080497, intron 1 of 5) 16768 NM_001080497 1955 Hs.744903 NM_001080497 ENSG00000106780 MEGF9 EGFL5 multiple EGF like domains 9 protein-coding 1.198 0.103 0.713 0.511 1.065 0.580 0.890 0.182 0.598 1.655 0.632 0.403 6.416 0.305 0.255 0.435 0.535 0.459 0.217 0.137 0.257 0.313 1539 chr8 145647419 145655960 + 0 NA intron (NM_183057, intron 2 of 8) intron (NM_183057, intron 2 of 8) 2257 NM_016208 51160 Hs.418175 NM_016208 ENSG00000160948 VPS28 - VPS28, ESCRT-I subunit protein-coding 2.300 0.861 1.759 2.579 6.212 1.782 7.583 1.788 7.040 3.500 0.665 5.825 3.107 1.283 3.221 1.660 1.218 3.237 1.221 1.292 1.201 2.170 1320 chr6 31760016 31764997 + 0 NA intron (NM_006295, intron 2 of 29).5 intron (NM_006295, intron 2 of 29).5 1206 NM_006295 7407 Hs.520026 NM_006295 ENSG00000204394 VARS G7A|VARS1|VARS2 valyl-tRNA synthetase protein-coding 3.416 1.279 3.037 2.394 4.683 2.988 5.912 1.227 4.535 3.946 1.614 9.717 6.218 3.475 1.890 1.856 1.167 3.098 3.185 1.977 1.617 3.901 796 chr19 42772241 42776162 + 0 NA intron (NM_001304815, intron 1 of 20) intron (NM_001304815, intron 1 of 20) 1512 NM_001304815 23152 Hs.388236 NM_015125 ENSG00000079432 CIC - capicua transcriptional repressor protein-coding 3.358 2.398 3.161 2.784 5.539 2.250 7.669 1.249 3.802 4.823 1.695 6.283 8.238 1.742 2.221 0.874 0.650 2.142 2.364 4.294 1.373 1.382 1026 chr22 21355052 21357599 + 0 NA promoter-TSS (NM_030573) promoter-TSS (NM_030573) 79 NM_001008695 80764 Hs.512756 NM_030573 ENSG00000184436 THAP7 - THAP domain containing 7 protein-coding 6.080 1.387 4.949 4.138 11.588 4.657 7.864 2.503 12.553 12.408 2.525 9.692 12.951 4.336 3.466 2.846 1.913 3.565 3.289 2.143 3.329 1.987 366 chr12 104664894 104705414 + 0 NA intron (NM_001261446, intron 2 of 13) AluSg|SINE|Alu 4694 NM_182729 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 2.770 1.258 1.528 2.482 4.097 2.662 1.780 0.491 1.829 2.498 1.343 2.790 9.198 1.723 0.847 0.737 0.912 1.663 2.057 2.834 1.767 1.830 844 chr2 46523286 46544608 + 0 NA intron (NM_001430, intron 1 of 15) intron (NM_001430, intron 1 of 15) 9406 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 1.506 0.645 0.333 0.456 0.417 0.512 2.898 0.363 1.008 0.761 0.143 1.605 0.726 1.729 0.447 0.376 0.331 0.490 0.831 0.968 0.285 0.797 1541 chr8 145741721 145749883 + 0 NA exon (NM_001272036, exon 4 of 5) exon (NM_001272036, exon 4 of 5) 2453 NM_014665 9684 Hs.459391 NM_014665 ENSG00000160959 LRRC14 LRRC14A leucine rich repeat containing 14 protein-coding 2.021 0.577 1.155 1.044 5.507 1.202 9.045 1.154 3.318 3.800 1.450 5.880 6.363 0.679 2.114 1.905 1.457 1.155 1.387 0.692 0.480 0.754 1390 chr7 12745045 12761645 + 0 NA Intergenic MER39|LTR|ERV1 26434 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 0.750 0.321 0.518 2.976 0.414 0.514 4.724 0.276 0.446 0.565 0.122 1.577 1.820 1.162 0.577 1.216 2.371 1.170 1.228 1.002 2.544 0.501 272 chr11 67069091 67086508 + 0 NA exon (NM_017857, exon 13 of 14) exon (NM_017857, exon 13 of 14) 6880 NM_017857 54961 Hs.29173 NM_017857 ENSG00000172830 SSH3 SSH3L slingshot protein phosphatase 3 protein-coding 2.941 0.619 0.863 0.963 5.813 0.818 1.097 0.381 1.072 2.469 0.735 8.849 2.747 1.244 1.077 0.601 0.481 0.343 0.561 0.763 0.277 1.025 1499 chr8 77585280 77599288 + 0 NA intron (NR_024360, intron 1 of 3) (TA)n|Simple_repeat|Simple_repeat -1231 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 0.403 3.059 0.168 0.470 1.845 0.081 0.439 0.068 0.265 0.094 0.482 0.192 0.279 0.512 0.098 0.477 0.744 0.102 0.009 6.420 0.277 0.047 1469 chr8 27728409 27732182 + 0 NA intron (NM_173833, intron 8 of 8) intron (NM_173833, intron 8 of 8) 13338 NR_036249 100422828 NR_036249 ENSG00000265847 MIR4287 - microRNA 4287 ncRNA 0.029 0.650 0.452 0.085 1.416 5.110 0.488 0.042 0.072 0.544 0.083 1.653 0.456 0.040 0.499 0.146 0.074 0.054 3.376 2.029 0.213 0.051 775 chr19 38825595 38828182 + 0 NA intron (NM_001330496, intron 1 of 27) CpG 445 NM_021185 57828 Hs.324335 NM_021185 ENSG00000099338 CATSPERG C19orf15 cation channel sperm associated auxiliary subunit gamma protein-coding 2.650 0.909 9.622 1.686 1.740 0.695 2.559 0.423 1.348 2.354 0.861 1.126 3.135 1.267 0.928 0.594 0.637 0.891 0.533 1.211 0.849 0.697 919 chr2 219259948 219272671 + 0 NA exon (NM_001206878, exon 2 of 7) exon (NM_001206878, exon 2 of 7) -1060 NR_029500 407017 NR_029500 ENSG00000199121 MIR26B MIRN26B|hsa-mir-26b|miR-26b microRNA 26b ncRNA 3.040 0.457 3.860 1.505 6.276 5.426 3.951 0.888 2.814 2.265 1.272 6.315 6.355 2.939 2.091 1.571 1.145 2.980 1.649 0.559 0.694 1.445 746 chr19 11049004 11073501 + 0 NA Intergenic AluSz6|SINE|Alu -10346 NM_003072 6597 Hs.327527 NM_003072 ENSG00000127616 SMARCA4 BAF190|BAF190A|BRG1|CSS4|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 protein-coding 0.936 0.425 0.610 0.920 1.271 0.308 3.376 0.527 1.227 1.140 0.346 1.391 1.924 0.774 0.436 0.578 0.417 0.531 0.867 0.645 0.445 0.595 534 chr16 10419755 10438603 + 0 NA Intergenic AluJr|SINE|Alu -50733 NM_001256160 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 0.225 0.234 1.124 0.165 0.418 0.065 1.065 1.354 4.548 0.390 0.103 0.225 0.565 0.346 0.050 0.046 0.045 0.147 0.143 0.773 0.067 0.280 400 chr13 111605435 111621399 + 0 NA Intergenic MER41-int|LTR|ERV1 -4957 NR_126378 104355135 Hs.649708 NR_126378 LINC00431 - long intergenic non-protein coding RNA 431 ncRNA 1.196 0.652 0.433 0.074 1.577 0.056 1.247 1.355 4.221 0.566 0.206 2.293 1.606 0.915 0.502 0.068 0.108 0.793 0.174 1.758 0.114 1.389 1268 chr5 172159075 172162053 + 0 NA Intergenic Intergenic -21942 NM_001287812 101928093 Hs.646902 NM_001287812 LOC101928093 - uncharacterized LOC101928093 protein-coding 0.300 3.093 2.968 0.179 3.832 1.203 5.621 1.882 9.427 2.336 0.565 3.795 0.330 3.951 0.562 0.026 6.439 1.236 7.683 0.078 2.401 744 chr19 4122436 4133329 + 0 NA Intergenic AluSx1|SINE|Alu -3756 NM_030662 5605 Hs.465627 NM_030662 ENSG00000126934 MAP2K2 CFC4|MAPKK2|MEK2|MKK2|PRKMK2 mitogen-activated protein kinase kinase 2 protein-coding 0.764 0.387 0.607 1.479 1.899 0.893 3.705 1.207 5.605 1.806 0.442 2.264 1.729 2.033 0.482 0.479 0.366 2.824 0.501 0.422 0.596 1.466 20 chr1 16274400 16280438 + 0 NA intron (NM_003443, intron 2 of 15) intron (NM_003443, intron 2 of 15) 25208 NM_001324138 7709 Hs.433764 NM_003443 ENSG00000116809 ZBTB17 MIZ-1|ZNF151|ZNF60|pHZ-67 zinc finger and BTB domain containing 17 protein-coding 0.536 2.891 0.405 0.370 2.176 1.069 4.342 0.685 1.893 2.322 0.718 2.271 0.590 2.460 1.190 0.052 0.110 6.539 1.709 6.210 0.197 1.295 888 chr2 161271959 161279940 + 0 NA intron (NM_002897, intron 1 of 13) intron (NM_002897, intron 1 of 13) -11556 NR_039946 100616364 NR_039946 ENSG00000153250 MIR4785 mir-4785 microRNA 4785 ncRNA 0.245 2.017 0.179 0.067 0.455 0.038 1.247 0.079 0.251 0.117 0.403 0.161 0.209 0.313 0.010 0.047 1.079 0.032 5.629 0.330 633 chr17 38174962 38183826 + 0 NA non-coding (NR_052017, exon 19 of 25) non-coding (NR_052017, exon 19 of 25) 3268 NR_106944 102466757 NR_106944 ENSG00000008838 MIR6884 hsa-mir-6884 microRNA 6884 ncRNA 0.698 0.251 0.356 0.207 0.531 0.366 0.824 0.115 0.227 0.462 0.125 4.725 0.296 0.910 0.259 0.275 0.225 0.602 0.114 0.468 0.337 0.149 1372 chr6 138187129 138195653 + 0 NA intron (NM_001270508, intron 1 of 8) intron (NM_001270508, intron 1 of 8) -2021 NR_049793 100130476 Hs.598050 NR_049793 ENSG00000237499 LOC100130476 - uncharacterized LOC100130476 ncRNA 0.561 0.951 0.607 0.564 1.115 0.223 5.120 0.276 0.514 1.504 0.471 2.837 0.556 1.718 0.776 0.469 0.291 1.040 0.138 1.382 3.948 2.622 1011 chr21 36587950 36592558 + 0 NA Intergenic Intergenic -168659 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 1.227 0.215 0.078 0.483 3.215 0.151 2.370 1.672 3.250 1.430 0.827 0.887 0.106 0.515 1.040 0.134 0.235 3.161 1.522 0.604 0.273 7.681 151 chr1 246589938 246601437 + 0 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) -14973 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 0.370 2.800 0.070 0.137 0.320 0.093 2.145 0.803 2.849 0.473 0.042 0.176 0.664 0.109 0.777 0.020 0.053 2.631 0.004 7.618 0.071 2.029 1627 chrX 41189816 41196247 + 0 NA promoter-TSS (NR_126094) promoter-TSS (NR_126094) -384 NM_001193417 1654 Hs.728563 NM_001356 ENSG00000215301 DDX3X CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102 DEAD-box helicase 3, X-linked protein-coding 2.351 1.020 4.391 2.272 4.840 2.764 3.152 1.227 6.262 2.738 0.341 3.122 1.938 6.588 1.620 1.249 1.090 3.095 1.505 1.999 1.443 1.301 1161 chr4 1239869 1244584 + 0 NA intron (NM_001012614, intron 1 of 9) CpG 682 NM_001328 1487 Hs.208597 NM_001328 ENSG00000159692 CTBP1 BARS C-terminal binding protein 1 protein-coding 3.245 1.549 2.700 4.806 5.624 1.437 8.139 2.574 9.671 3.561 1.312 3.792 4.395 2.978 3.940 4.459 3.300 4.209 2.135 2.035 3.135 0.917 468 chr15 52384645 52387770 + 0 NA Intergenic Intergenic 18765 NM_001306168 10017 Hs.283672 NM_020396 ENSG00000137875 BCL2L10 BCL-B|Boo|Diva|bcl2-L-10 BCL2 like 10 protein-coding 0.103 3.447 1.948 0.171 4.141 4.566 3.589 1.489 4.487 1.663 1.077 4.362 1.492 0.675 0.959 0.051 0.077 6.705 0.053 9.631 0.030 0.956 1285 chr5 180228381 180244915 + 0 NA 5' UTR (NM_001114618, exon 1 of 3) 5' UTR (NM_001114618, exon 1 of 3) 169 NM_001114618 4245 Hs.519818 NM_002406 ENSG00000131446 MGAT1 GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding 1.063 0.691 1.994 1.901 3.045 0.867 1.653 0.262 1.231 1.645 1.068 3.563 10.016 1.686 1.897 0.975 0.639 1.003 0.687 0.939 1.354 0.564 1019 chr21 45126184 45157347 + 0 NA intron (NM_003681, intron 1 of 10) intron (NM_003681, intron 1 of 10) 2787 NM_003681 8566 Hs.284491 NM_003681 ENSG00000160209 PDXK C21orf124|C21orf97|HEL-S-1a|PKH|PNK|PRED79 pyridoxal (pyridoxine, vitamin B6) kinase protein-coding 2.001 0.548 1.555 0.436 2.593 2.482 2.302 0.697 2.256 0.855 0.178 1.806 0.547 2.211 0.860 0.590 0.507 1.267 0.441 0.853 0.174 1.238 700 chr17 73148101 73157114 + 0 NA Intergenic AluY|SINE|Alu -1829 NM_001288611 51155 Hs.532803 NM_016185 ENSG00000189159 HN1 ARM2|HN1A hematological and neurological expressed 1 protein-coding 2.381 0.646 2.659 2.180 4.954 0.944 1.473 0.544 1.787 1.869 1.071 4.026 5.121 1.506 1.256 1.755 1.510 1.816 1.430 0.873 1.297 2.922 287 chr11 118777562 118801711 + 0 NA Intergenic Intergenic -8023 NM_182557 283149 Hs.414740 NM_182557 ENSG00000186174 BCL9L BCL9-2|DLNB11 B-cell CLL/lymphoma 9-like protein-coding 6.260 2.923 4.321 0.677 6.168 6.844 8.629 1.410 5.448 2.536 2.437 11.042 4.288 4.898 4.582 0.513 0.428 6.567 7.468 5.187 0.500 4.190 475 chr15 66584863 66589066 + 0 NA intron (NM_001323945, intron 1 of 16) intron (NM_001323945, intron 1 of 16) 806 NM_001323944 115752 Hs.446251 NM_133375 ENSG00000166938 DIS3L DIS3L1 DIS3 like exosome 3'-5' exoribonuclease protein-coding 2.310 3.534 1.015 7.122 6.479 2.987 4.390 1.259 4.696 2.304 1.563 4.594 5.119 3.744 1.741 2.812 1.830 7.993 2.480 6.765 3.502 1.213 78 chr1 150977801 150982680 + 0 NA promoter-TSS (NM_021222) promoter-TSS (NM_021222) -15 NM_001319998 55793 Hs.743952 NM_018379 ENSG00000143409 FAM63A MINDY-1 family with sequence similarity 63 member A protein-coding 2.950 0.330 1.639 1.994 2.457 2.032 1.182 0.881 2.875 1.940 0.601 2.129 4.683 1.275 1.262 3.788 4.364 1.754 0.610 0.272 0.611 1.605 1380 chr7 1605198 1612271 + 0 NA promoter-TSS (NR_021487) promoter-TSS (NR_021487) 895 NM_032302 84262 Hs.446311 NM_032302 ENSG00000157778 PSMG3 C7orf48|PAC3 proteasome assembly chaperone 3 protein-coding 5.469 0.945 4.035 2.016 3.395 1.502 9.201 0.759 2.448 3.822 0.717 8.989 5.090 5.206 4.052 1.469 1.045 2.222 0.717 1.322 1.401 1.459 990 chr20 52553583 52559299 + 0 NA Intergenic MIRc|SINE|MIR -64193 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 0.528 0.152 0.930 0.150 0.404 0.106 0.571 2.492 4.758 0.340 0.397 1.402 0.930 1.026 0.664 0.095 0.129 1.281 0.059 0.196 0.161 2.260 413 chr14 37218968 37242351 + 0 NA intron (NM_030631, intron 3 of 9) intron (NM_030631, intron 3 of 9) 103886 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 5.912 0.032 0.430 0.091 1.113 0.063 0.123 0.016 0.062 0.568 0.477 1.335 2.095 0.051 0.213 0.044 0.073 0.168 0.213 0.045 0.039 0.085 294 chr11 128385657 128396906 + 0 NA intron (NM_001143820, intron 3 of 9) intron (NM_001143820, intron 3 of 9) 924 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 0.932 1.398 1.601 0.086 0.425 0.736 3.747 0.985 3.207 0.605 0.335 2.398 0.124 3.765 2.616 0.145 0.108 4.909 6.164 3.195 0.020 3.242 1614 chr9 139741854 139744766 + 0 NA promoter-TSS (NM_001287342) promoter-TSS (NM_001287342) 42 NM_001287343 29085 Hs.409834 NM_014172 ENSG00000054148 PHPT1 CGI-202|HEL-S-132P|HSPC141|PHP|PHP14 phosphohistidine phosphatase 1 protein-coding 4.278 1.998 10.936 3.886 7.780 4.708 5.944 2.055 10.978 5.254 1.357 7.543 7.693 4.753 2.557 3.891 1.830 3.050 2.484 2.657 1.617 1.925 1442 chr7 99932231 99943197 + 0 NA intron (NR_036570, intron 3 of 16) AluSz6|SINE|Alu -3784 NR_003613 5379 Hs.634244 NM_005394 PMS2P1 PMS2L1|PMS2L13|PMS2L6|PMS2L7|PMS2L8|PMS3|PMS8|PMSR1|PMSR2 PMS1 homolog 2, mismatch repair system component pseudogene 1 pseudo 2.162 0.565 2.013 2.888 4.993 1.819 1.452 0.525 2.712 2.407 1.141 4.635 5.880 3.744 1.569 1.646 1.654 1.094 1.618 0.780 2.146 1.207 932 chr2 242030426 242043156 + 0 NA non-coding (NR_028050, exon 2 of 5) non-coding (NR_028050, exon 2 of 5) 4956 NR_138463 130916 Hs.159556 NM_182501 ENSG00000122085 MTERF4 MTERFD2 mitochondrial transcription termination factor 4 protein-coding 3.264 0.243 0.480 0.786 1.017 0.527 1.197 0.172 0.509 0.501 0.168 0.800 1.652 0.692 2.230 0.405 0.429 0.325 0.171 0.341 0.376 0.252 764 chr19 22931658 22969792 + 0 NA intron (NM_001080409, intron 3 of 3) MSTB|LTR|ERVL-MaLR 16248 NM_001080409 7652 Hs.568380 NM_001080409 ENSG00000213973 ZNF99 C19orf9|F8281 zinc finger protein 99 protein-coding 0.094 0.013 0.181 0.020 0.103 0.020 0.063 0.342 5.344 0.173 0.011 0.074 0.123 0.215 0.025 0.012 0.026 0.012 0.007 0.056 0.021 0.045 349 chr12 57913160 57917909 + 0 NA Intergenic Intergenic -1125 NM_052897 114785 Hs.524523 NM_052897 ENSG00000166987 MBD6 - methyl-CpG binding domain protein 6 protein-coding 3.599 2.757 4.377 6.135 10.482 3.245 5.248 0.624 3.631 3.517 2.521 7.633 11.462 3.387 3.133 3.443 3.139 4.242 2.506 4.443 3.027 2.383 1549 chr9 4136042 4149202 + 0 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) 9561 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 0.483 1.327 0.956 0.126 0.674 0.163 0.196 1.018 3.268 0.298 0.268 2.513 0.423 0.604 0.703 0.047 0.074 1.753 0.294 3.631 0.035 2.466 1525 chr8 143779005 143783547 + 0 NA promoter-TSS (NM_017527) promoter-TSS (NM_017527) -253 NM_001160354 54742 Hs.69517 NM_017527 ENSG00000160886 LY6K CT97|HSJ001348|URLC10|ly-6K lymphocyte antigen 6 complex, locus K protein-coding 1.313 0.900 0.818 0.111 6.689 0.654 20.283 3.427 9.883 2.009 0.800 4.547 0.973 5.876 1.930 0.034 0.037 2.075 6.254 2.304 0.025 1.987 515 chr15 99393915 99405331 + 0 NA intron (NM_000875, intron 2 of 20) MIRb|SINE|MIR 71968 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 2.491 0.195 0.416 0.325 3.043 3.710 2.456 0.138 0.536 0.780 0.727 1.876 2.268 1.047 1.501 0.516 0.616 4.835 0.128 0.399 0.131 1.692 1242 chr5 133800327 133852270 + 0 NA Intergenic L2|LINE|L2 -15945 NR_105045 101927934 Hs.535775 NR_105045 ENSG00000251169 LINC01843 - long intergenic non-protein coding RNA 1843 ncRNA 0.795 0.293 1.882 3.236 4.872 1.034 0.957 0.118 0.264 0.295 1.328 0.993 2.712 0.400 0.597 0.854 0.990 0.896 1.001 0.560 2.469 0.700 1208 chr5 10300954 10318788 + 0 NA Intergenic Intergenic -1703 NM_138809 134147 Hs.192586 NM_138809 ENSG00000164237 CMBL JS-1 carboxymethylenebutenolidase homolog protein-coding 2.449 0.069 1.424 0.096 1.987 0.102 5.083 0.197 0.539 0.719 0.245 2.924 1.084 0.670 0.573 0.127 0.124 0.053 0.087 0.166 0.006 0.446 1107 chr3 153838249 153843603 + 0 NA intron (NM_015595, intron 2 of 14) intron (NM_015595, intron 2 of 14) 1777 NM_015595 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 1.099 2.844 0.228 0.777 1.445 0.454 2.474 0.770 2.541 1.562 0.897 0.896 2.399 0.538 0.739 1.065 0.858 1.835 0.016 5.025 0.194 1.022 138 chr1 228268867 228272723 + 0 NA promoter-TSS (NM_001024228) promoter-TSS (NM_001024228) -56 NM_001024227 375 Hs.286221 NM_001658 ENSG00000143761 ARF1 - ADP ribosylation factor 1 protein-coding 5.128 1.095 2.386 5.176 8.445 3.042 4.735 1.772 4.919 15.768 3.202 10.453 13.700 5.821 3.893 3.558 2.102 3.066 1.548 0.965 1.833 2.123 1383 chr7 4720949 4724300 + 0 NA intron (NM_001037165, intron 1 of 8) CpG 694 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 3.067 3.452 5.778 3.637 8.178 2.259 11.281 0.967 2.752 7.045 2.783 10.489 7.924 8.050 3.709 3.977 1.863 4.215 3.994 5.028 1.947 3.106 606 chr17 18620277 18631328 + 0 NA intron (NM_001037330, intron 1 of 4) intron (NM_001037330, intron 1 of 4) 400 NM_001037330 147166 Hs.164324 NM_001037330 ENSG00000108448 TRIM16L TRIM70 tripartite motif containing 16-like protein-coding 5.065 1.076 0.860 1.320 6.694 2.938 2.812 2.185 4.073 3.971 2.110 2.591 14.307 1.730 1.613 1.287 1.834 0.680 3.325 2.443 3.386 2.030 137 chr1 227050264 227055608 + 0 NA Intergenic L1M4|LINE|L1 -5337 NM_012486 5664 Hs.25363 NM_000447 ENSG00000143801 PSEN2 AD3L|AD4|CMD1V|PS2|STM2 presenilin 2 protein-coding 0.193 0.093 0.121 2.043 0.322 0.141 1.646 0.388 0.344 0.293 0.044 0.106 0.184 0.455 0.192 3.046 3.475 1.034 0.094 0.021 2.990 0.919 1414 chr7 55165320 55182118 + 0 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) -3791 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 0.180 0.400 0.207 0.095 1.144 0.171 2.687 0.108 0.167 1.406 0.920 5.831 3.177 1.101 0.242 0.033 0.064 0.390 0.492 0.871 0.034 0.711 1201 chr4 185291073 185308745 + 0 NA intron (NR_125934, intron 1 of 5) L1MC4|LINE|L1 3551 NR_125934 102723766 Hs.432281 NR_125933 ENSG00000249096 LOC102723766 - uncharacterized LOC102723766 ncRNA 0.349 0.512 0.787 1.126 1.021 0.082 1.060 0.300 0.873 0.370 0.186 1.359 0.422 0.268 0.505 0.873 1.147 0.607 0.344 0.913 3.179 1.190 724 chr18 45541733 45548085 + 0 NA Intergenic Intergenic -87392 NM_001003652 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 0.400 0.039 0.057 0.101 0.060 3.293 0.059 0.024 0.043 0.133 0.191 0.133 0.558 0.211 0.089 0.077 0.043 0.105 0.506 0.015 666 chr17 47572313 47594272 + 0 NA non-coding (NR_103773, exon 3 of 3) non-coding (NR_103773, exon 3 of 3) -4887 NR_106751 102465141 NR_106751 ENSG00000277478 MIR6165 hsa-mir-6165 microRNA 6165 ncRNA 0.225 0.141 0.215 0.212 1.346 0.073 0.424 0.081 0.200 0.757 0.980 4.160 2.118 0.212 0.171 0.168 0.122 0.068 0.207 0.253 0.095 0.129 432 chr14 65688352 65712192 + 0 NA Intergenic L1MA2|LINE|L1 -11207 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LOC100128233 - uncharacterized LOC100128233 ncRNA 2.327 0.577 2.540 0.260 0.328 0.131 2.941 0.651 1.090 0.543 0.239 1.637 1.299 0.217 0.945 0.260 0.280 2.280 2.704 1.114 0.169 0.969 519 chr16 637317 644638 + 0 NA intron (NM_021168, intron 1 of 5) intron (NM_021168, intron 1 of 5) 804 NM_021168 57799 Hs.459630 NM_021168 ENSG00000197562 RAB40C RARL|RASL8C RAB40C, member RAS oncogene family protein-coding 3.659 0.895 2.436 2.541 7.296 1.638 5.735 0.777 2.562 3.541 1.997 7.282 5.625 1.443 1.549 1.928 1.203 1.704 1.523 1.215 1.585 2.099 1074 chr3 55511242 55525569 + 0 NA intron (NM_003392, intron 1 of 4) intron (NM_003392, intron 1 of 4) -2979 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 1.191 0.657 0.193 1.913 1.106 0.502 0.207 0.468 1.137 2.337 2.182 0.398 6.529 2.370 0.850 2.983 2.966 0.018 0.050 1.283 1.115 0.047 860 chr2 96867878 96875533 + 0 NA intron (NM_020151, intron 1 of 7) intron (NM_020151, intron 1 of 7) -2449 NR_046322 285033 Hs.58648 NM_001037228 STARD7-AS1 - STARD7 antisense RNA 1 ncRNA 1.793 0.890 1.933 2.974 3.883 1.848 2.595 0.387 2.682 5.472 2.253 2.700 8.519 2.215 1.547 1.114 1.297 0.957 0.857 1.042 1.394 0.801 1195 chr4 148710118 148716731 + 0 NA intron (NM_024605, intron 1 of 22) L1M5|LINE|L1 9678 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 0.256 0.183 0.679 0.049 0.495 0.058 0.610 0.035 0.125 0.252 0.147 1.501 0.227 0.053 0.299 0.012 0.074 0.185 0.706 0.158 0.034 3.949 1567 chr9 75746328 75773412 + 0 NA Intergenic Intergenic -6777 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 1.532 0.572 1.292 0.055 4.224 1.548 1.270 0.562 2.484 1.370 0.451 1.379 4.675 0.931 0.618 0.219 0.544 1.557 1.720 1.415 0.072 1.119 1063 chr3 39191681 39195620 + 0 NA intron (NM_001320560, intron 1 of 4) intron (NM_001320560, intron 1 of 4) 1452 NM_033027 64651 Hs.370950 NM_033027 ENSG00000144655 CSRNP1 AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1 cysteine and serine rich nuclear protein 1 protein-coding 4.659 2.609 2.411 0.570 1.650 0.904 3.454 1.187 3.569 0.879 0.247 3.217 1.636 2.980 2.029 0.454 0.306 7.561 2.301 4.293 0.174 1.709 17 chr1 16119336 16128816 + 0 NA Intergenic AluSc|SINE|Alu 10118 NM_001089591 440567 Hs.568229 NM_001089591 ENSG00000233954 UQCRHL - ubiquinol-cytochrome c reductase hinge protein like protein-coding 1.363 1.672 2.640 0.203 3.101 1.338 3.980 1.973 4.510 2.814 1.289 1.844 3.718 3.176 1.979 0.144 0.138 7.233 3.208 3.703 0.067 1.197 1327 chr6 37206020 37214946 + 0 NA intron (NM_001286401, intron 1 of 2) intron (NM_001286401, intron 1 of 2) 14930 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 0.893 2.927 0.642 0.048 0.242 0.304 2.229 1.742 7.074 0.339 0.127 0.727 0.703 0.878 0.608 0.062 0.014 2.605 0.635 6.861 0.039 4.192 1274 chr5 172356353 172359922 + 0 NA intron (NM_001031711, intron 7 of 9) intron (NM_001031711, intron 7 of 9) -27595 NM_001317981 51121 Hs.546390 NM_016093 ENSG00000037241 RPL26L1 RPL26P1 ribosomal protein L26 like 1 protein-coding 0.416 4.057 0.480 0.030 0.387 0.475 1.589 0.321 0.733 0.365 0.067 0.337 0.208 0.876 0.350 0.064 0.069 2.063 0.095 10.218 0.065 0.347 708 chr17 77733452 77754477 + 0 NA Intergenic Intergenic -8013 NM_005189 84733 Hs.368410 NM_005189 ENSG00000173894 CBX2 CDCA6|M33|SRXY5 chromobox 2 protein-coding 0.427 0.106 0.386 0.737 1.031 0.185 1.544 0.101 0.261 0.800 0.264 0.501 7.043 0.351 0.272 0.942 0.554 0.097 0.131 0.090 0.361 0.072 110 chr1 169331043 169338339 + 0 NA intron (NR_104229, intron 1 of 12) L2c|LINE|L2 -2426 NM_001320973 8548 Hs.130746 NM_003666 ENSG00000117475 BLZF1 GOLGIN-45|JEM-1|JEM-1s|JEM1 basic leucine zipper nuclear factor 1 protein-coding 1.652 1.966 0.724 0.889 1.603 0.626 2.070 1.069 4.729 1.326 0.263 2.070 2.265 2.534 1.915 0.243 0.351 3.191 4.144 5.647 0.590 5.645 333 chr12 32907213 32910138 + 0 NA exon (NM_001040436, exon 1 of 5) exon (NM_001040436, exon 1 of 5) 212 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 4.760 1.929 5.602 3.579 12.504 2.607 4.503 0.676 2.986 5.943 0.624 7.755 10.009 2.997 8.922 2.244 2.099 5.775 1.948 4.323 1.757 2.070 1601 chr9 131445268 131453187 + 0 NA intron (NM_001248000, intron 1 of 7) AluJb|SINE|Alu 1862 NM_001248000 6418 Hs.436687 NM_003011 ENSG00000119335 SET 2PP2A|I2PP2A|IGAAD|IPP2A2|PHAPII|TAF-I|TAF-IBETA SET nuclear proto-oncogene protein-coding 3.422 1.407 2.798 2.957 7.405 3.466 3.172 1.252 5.310 6.064 1.881 5.860 2.175 4.349 1.874 3.160 2.098 3.009 3.539 2.697 1.941 2.110 710 chr17 77957920 77969518 + 0 NA intron (NM_019020, intron 3 of 11) intron (NM_019020, intron 3 of 11) -39063 NM_001271846 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 5.016 0.246 1.783 10.554 1.562 0.143 3.684 0.076 0.113 0.445 1.241 1.803 1.193 0.887 0.970 1.035 1.199 0.193 0.297 0.281 3.059 0.408 323 chr12 14987324 14999152 + 0 NA intron (NM_021071, intron 2 of 2) intron (NM_021071, intron 2 of 2) 3175 NM_021071 420 Hs.591158 NM_021071 ENSG00000111339 ART4 ARTC4|CD297|DO|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 0.777 0.199 0.049 0.054 0.297 0.077 5.019 0.186 0.232 0.330 0.027 0.232 0.198 0.446 0.555 0.039 0.031 1.488 1.490 0.465 0.019 1.115 856 chr2 74790247 74796334 + 0 NA intron (NM_001321739, intron 7 of 10) MamGypLTR1b|LTR|Gypsy 12003 NM_001318868 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 0.053 2.345 0.184 0.141 0.079 0.050 0.338 0.321 1.000 0.217 0.053 0.124 0.061 0.723 0.226 0.013 0.019 1.254 0.007 7.881 0.030 0.106 112 chr1 172897020 172904258 + 0 NA Intergenic L2a|LINE|L2 119464 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL tumor necrosis factor superfamily member 18 protein-coding 1.242 1.869 0.420 0.090 2.502 0.431 1.081 0.863 2.260 1.054 0.919 1.226 1.369 0.615 0.860 0.106 0.119 2.890 0.627 4.800 0.142 3.259 545 chr16 31005954 31011018 + 0 NA intron (NM_052874, intron 5 of 9) intron (NM_052874, intron 5 of 9) 11967 NM_001142778 80270 Hs.460618 NM_025193 ENSG00000099377 HSD3B7 CBAS1|PFIC4|SDR11E3 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 protein-coding 0.480 3.301 2.478 0.190 1.045 0.811 8.612 2.032 6.146 0.574 0.110 1.667 1.128 2.620 1.010 0.060 0.120 5.795 0.266 6.945 0.138 2.113 191 chr10 92674921 92694135 + 0 NA Intergenic Intergenic -3496 NM_014391 27063 Hs.448589 NM_014391 ENSG00000148677 ANKRD1 ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2 ankyrin repeat domain 1 protein-coding 0.959 0.581 0.282 0.045 0.631 2.994 4.085 0.457 1.375 0.101 0.238 0.863 0.137 0.259 0.949 0.078 0.177 2.399 0.321 1.041 0.072 1.573 187 chr10 71904382 71907872 + 0 NA exon (NM_001040273, exon 1 of 2) exon (NM_001040273, exon 1 of 2) 369 NR_073594 219743 Hs.533655 NM_173555 ENSG00000156521 TYSND1 NET41 trypsin domain containing 1 protein-coding 1.702 1.096 2.031 3.590 8.311 2.173 2.640 0.943 3.135 3.514 1.414 11.940 7.176 3.409 2.193 2.292 1.161 1.088 1.253 1.182 1.789 0.679 588 chr17 6542477 6547659 + 0 NA promoter-TSS (NM_014804) promoter-TSS (NM_014804) -821 NM_014804 9851 Hs.28070 NM_014804 ENSG00000198920 KIAA0753 MNR|OFD15|OFIP KIAA0753 protein-coding 2.325 1.286 2.119 1.465 5.413 1.862 2.584 1.203 3.342 4.125 0.950 4.756 5.483 2.010 4.201 0.875 0.610 1.201 1.687 1.405 0.843 1.179 646 chr17 41433660 41449143 + 0 NA Intergenic MER5B|DNA|hAT-Charlie 24865 NR_027412 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 3.425 1.080 2.974 1.816 4.642 2.116 3.400 0.868 4.804 3.010 1.471 4.494 9.442 0.816 1.295 1.163 1.039 2.388 1.092 2.069 1.093 1.196 756 chr19 17345616 17358142 + 0 NA intron (NM_005234, intron 1 of 3) L2c|LINE|L2 4272 NM_005234 2063 Hs.466148 NM_005234 ENSG00000160113 NR2F6 EAR-2|EAR2|ERBAL2 nuclear receptor subfamily 2 group F member 6 protein-coding 3.094 0.830 2.462 2.361 2.125 0.863 2.757 0.359 0.655 1.454 0.796 2.972 3.800 1.147 1.368 0.892 0.684 1.090 0.232 0.738 0.983 0.473 446 chr14 92587101 92589577 + 0 NA promoter-TSS (NM_004545) promoter-TSS (NM_004545) 23 NM_001322272 53981 Hs.657632 NM_017437 ENSG00000165934 CPSF2 CPSF100 cleavage and polyadenylation specific factor 2 protein-coding 7.480 1.322 6.872 6.313 13.270 7.850 5.517 3.045 10.590 10.392 2.574 12.140 10.840 3.818 3.743 3.210 2.672 4.658 2.949 1.216 5.026 2.403 1283 chr5 179229767 179238991 + 0 NA promoter-TSS (NM_014275) promoter-TSS (NM_014275) 376 NM_001142299 8878 Hs.587290 NM_003900 ENSG00000161011 SQSTM1 A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B sequestosome 1 protein-coding 1.279 0.899 10.498 3.513 2.764 0.995 5.268 0.289 0.560 1.818 1.037 2.892 7.543 4.105 2.265 2.242 1.360 1.015 1.057 1.125 1.820 1.452 262 chr11 64618308 64647490 + 0 NA intron (NM_006795, intron 2 of 4) intron (NM_006795, intron 2 of 4) 13341 NM_006795 10938 Hs.523774 NM_006795 ENSG00000110047 EHD1 H-PAST|HPAST1|PAST|PAST1 EH domain containing 1 protein-coding 1.164 1.362 1.127 0.444 1.202 1.104 3.077 0.505 1.369 0.638 0.359 2.804 1.026 1.594 1.053 0.256 0.299 3.363 1.895 2.754 0.209 0.950 1220 chr5 43120282 43122793 + 0 NA promoter-TSS (NM_001330714) promoter-TSS (NM_001330714) -26 NM_001297548 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 6.082 1.444 4.567 7.717 13.638 4.098 5.286 2.728 15.441 12.029 3.180 9.901 12.566 7.462 3.743 5.593 3.692 4.377 2.149 2.516 5.296 1.276 212 chr11 828063 835646 + 0 NA 3' UTR (NM_001286606, exon 9 of 9) 3' UTR (NM_001286606, exon 9 of 9) -1098 NM_004357 977 Hs.654379 NM_004357 ENSG00000177697 CD151 GP27|MER2|PETA-3|RAPH|SFA1|TSPAN24 CD151 molecule (Raph blood group) protein-coding 3.424 1.845 2.838 0.338 1.986 1.600 4.774 0.603 1.982 3.356 0.293 3.958 2.457 1.887 2.406 0.817 0.568 2.911 0.565 1.991 0.288 1.464 1582 chr9 110511814 110519171 + 0 NA Intergenic MLT1H1|LTR|ERVL-MaLR -263491 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 2.606 0.337 2.479 1.389 1.913 0.730 3.928 1.069 2.332 1.158 0.469 2.234 1.644 0.596 0.937 0.323 0.479 6.700 8.041 0.989 0.790 3.481 1599 chr9 130316099 130348321 + 0 NA promoter-TSS (NM_022833) promoter-TSS (NM_022833) -814 NM_022833 64855 Hs.522401 NM_022833 ENSG00000136830 FAM129B C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 family with sequence similarity 129 member B protein-coding 2.656 1.007 2.141 0.262 3.677 2.451 2.574 0.692 1.949 2.196 1.084 3.003 3.327 1.440 1.167 0.510 0.404 4.439 3.481 2.033 0.139 1.439 1331 chr6 42369779 42375429 + 0 NA intron (NM_033502, intron 2 of 17) intron (NM_033502, intron 2 of 17) 47185 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 0.226 0.153 2.810 0.189 0.538 3.406 3.675 0.222 0.476 0.291 0.343 2.703 0.251 0.186 1.049 0.084 0.108 4.822 0.963 0.365 0.123 0.782 1149 chr3 189287896 189296457 + 0 NA Intergenic Intergenic -22359 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 1.074 0.014 0.151 0.275 nan 0.080 0.235 0.065 0.100 2.556 2.604 0.792 3.844 0.057 0.300 0.036 0.158 0.008 0.034 0.091 0.159 0.471 542 chr16 30536768 30547987 + 0 NA 3' UTR (NM_001305018, exon 3 of 3) 3' UTR (NM_001305018, exon 3 of 3) 3914 NM_023931 65988 Hs.592032 NM_023931 ENSG00000169955 ZNF747 - zinc finger protein 747 protein-coding 2.346 0.662 1.922 3.443 5.887 1.505 3.579 1.310 4.058 3.285 1.044 5.889 8.813 2.130 0.799 1.669 0.875 1.813 0.722 1.162 1.862 0.935 1305 chr6 21586554 21600799 + 0 NA promoter-TSS (NM_003107) promoter-TSS (NM_003107) -296 NM_003107 6659 Hs.643910 NM_003107 ENSG00000124766 SOX4 EVI16 SRY-box 4 protein-coding 2.915 0.756 6.472 2.680 2.590 1.684 2.845 1.332 6.692 2.371 0.931 1.451 3.750 1.725 2.280 2.155 1.894 0.086 1.952 1.122 3.020 2.085 961 chr20 39656273 39659897 + 0 NA exon (NM_003286, exon 2 of 21) exon (NM_003286, exon 2 of 21) 627 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI topoisomerase (DNA) I protein-coding 5.017 1.230 5.005 3.127 7.832 1.533 5.382 1.888 7.655 5.710 1.506 12.709 10.072 3.656 2.887 1.531 1.506 4.427 3.245 1.746 2.338 2.049 1288 chr6 1609311 1615912 + 0 NA 3' UTR (NM_001453, exon 1 of 1) 3' UTR (NM_001453, exon 1 of 1) 1930 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 1.779 2.457 1.185 1.218 10.459 0.266 2.322 0.888 3.098 1.435 0.466 3.450 0.800 2.423 0.708 1.834 1.208 1.108 0.844 3.627 0.612 0.628 1087 chr3 101420500 101424741 + 0 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat -8658 NR_002941 285359 Hs.720825 NR_002941 PDCL3P4 - phosducin-like 3 pseudogene 4 pseudo 1.011 0.494 0.339 0.025 0.267 0.036 0.151 0.073 0.064 0.736 0.057 0.543 0.574 0.312 0.391 0.036 0.140 1.612 0.059 0.973 0.080 6.575 810 chr19 48772294 48776906 + 0 NA promoter-TSS (NM_001331098) promoter-TSS (NM_001331098) 98 NM_001331098 163071 Hs.511883 NM_153608 ENSG00000178150 ZNF114 - zinc finger protein 114 protein-coding 2.685 0.188 0.481 0.490 1.083 4.539 3.048 1.334 6.624 1.791 0.555 0.764 5.938 4.085 1.191 1.116 0.794 0.032 1.502 0.409 0.674 3.548 574 chr16 86957180 86966723 + 0 NA Intergenic MIRb|SINE|MIR -129439 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LOC440390 - uncharacterized LOC440390 ncRNA 0.223 0.882 0.158 0.146 0.583 0.048 0.457 2.506 5.685 0.571 0.084 0.149 0.155 0.265 0.187 0.017 0.013 4.148 0.026 1.980 0.024 0.020 1238 chr5 127147798 127151402 + 0 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 110519 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 0.695 0.275 7.901 0.050 0.293 0.107 0.509 0.023 0.038 1.934 1.243 3.955 0.690 0.371 0.227 0.034 0.433 0.012 0.434 0.089 0.028 170 chr10 21802683 21829207 + 0 NA Intergenic Intergenic -1334 NM_207371 387640 Hs.350848 NM_207371 ENSG00000180592 SKIDA1 C10orf140|DLN-1 SKI/DACH domain containing 1 protein-coding 1.069 0.349 0.521 0.750 9.255 2.828 0.619 0.891 3.866 1.760 0.715 4.102 1.325 0.991 0.758 0.637 0.446 0.575 0.529 0.332 0.486 1.708 1587 chr9 118913508 118918704 + 0 NA promoter-TSS (NM_002581) promoter-TSS (NM_002581) 35 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 0.144 3.723 0.456 0.082 0.072 2.948 0.251 1.474 5.065 0.268 0.080 0.150 0.271 2.442 0.101 0.311 0.446 0.404 0.033 7.635 0.023 0.055 33 chr1 28666249 28673987 + 0 NA Intergenic Intergenic 14605 NM_017638 54797 Hs.479911 NM_017638 ENSG00000130772 MED18 p28b mediator complex subunit 18 protein-coding 0.320 1.040 0.135 0.124 0.706 0.130 0.568 0.133 0.483 0.942 0.022 0.391 0.436 0.406 0.295 0.071 0.063 0.955 0.483 2.917 0.093 4.473 660 chr17 46547913 46570909 + 0 NA Intergenic Intergenic 37216 NR_110804 101927166 Hs.149244 NR_110804 LOC101927166 - uncharacterized LOC101927166 ncRNA 0.542 0.706 0.396 0.378 0.280 0.924 1.398 1.049 4.000 0.442 0.130 0.456 0.386 0.282 0.771 0.197 0.265 5.549 1.371 1.621 0.447 0.406 1559 chr9 33318656 33332045 + 0 NA intron (NM_002504, intron 9 of 23) L1M4b|LINE|L1 34935 NM_147134 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 0.619 0.379 0.511 0.200 0.541 0.125 1.252 1.106 5.707 1.168 0.097 1.546 0.271 0.910 0.591 0.093 0.072 1.526 1.156 1.272 0.024 1.223 7 chr1 6659474 6675961 + 0 NA Intergenic AluSx3|SINE|Alu -4759 NM_014851 9903 Hs.7764 NM_014851 ENSG00000162413 KLHL21 - kelch like family member 21 protein-coding 1.903 0.548 1.583 1.101 2.605 1.269 1.600 0.724 1.992 3.158 0.625 3.924 3.279 2.075 0.898 0.729 0.452 2.362 1.333 0.547 0.358 1.367 26 chr1 24610446 24636449 + 0 NA Intergenic AluSx1|SINE|Alu -22365 NM_198173 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 0.541 0.177 0.110 0.107 1.922 0.197 0.368 0.097 0.103 1.778 1.045 0.825 4.126 0.174 0.192 0.076 0.112 0.091 0.055 0.356 0.085 0.273 227 chr11 32439410 32445063 + 0 NA intron (NM_024426, intron 3 of 9) (TAA)n|Simple_repeat|Simple_repeat 10127 NM_001198552 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33 Wilms tumor 1 protein-coding 0.205 1.882 0.087 0.057 0.142 0.122 0.764 0.980 5.037 0.323 0.014 0.085 0.188 0.124 0.221 0.014 0.043 0.265 0.007 5.207 0.041 0.056 977 chr20 50357953 50370289 + 0 NA intron (NM_006045, intron 1 of 27) intron (NM_006045, intron 1 of 27) 20829 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 2.742 0.141 4.553 0.141 1.354 0.617 2.051 0.761 1.792 0.976 0.217 3.603 1.560 1.213 1.095 0.050 0.088 2.594 2.017 0.391 0.223 3.020 566 chr16 75335193 75342197 + 0 NA intron (NM_006324, intron 6 of 6) intron (NM_006324, intron 6 of 6) -36744 NM_001170715 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 1.850 0.689 3.925 0.135 4.853 1.380 2.377 0.906 3.458 3.217 1.097 6.817 6.557 0.569 1.149 0.034 0.017 1.801 2.055 1.590 0.041 1.701 526 chr16 2262067 2266503 + 0 NA exon (NM_001042371, exon 1 of 2) exon (NM_001042371, exon 1 of 2) 537 NM_001042371 283871 Hs.442634 NM_001042371 ENSG00000184207 PGP AUM|G3PP|PGPase phosphoglycolate phosphatase protein-coding 2.029 0.754 3.040 3.846 4.187 4.413 4.868 0.918 5.725 3.144 0.980 4.632 3.998 1.919 1.311 1.628 1.423 1.342 2.873 0.677 2.456 2.253 806 chr19 47286216 47291951 + 0 NA promoter-TSS (NM_001145145) promoter-TSS (NM_001145145) -949 NM_001145145 6510 Hs.631582 NM_005628 ENSG00000105281 SLC1A5 AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC solute carrier family 1 member 5 protein-coding 9.118 1.490 2.989 6.619 8.602 7.066 4.890 1.798 6.087 4.499 2.761 6.772 11.961 2.173 2.718 2.653 2.037 2.232 1.326 2.405 2.178 1.764 264 chr11 65077702 65086218 + 0 NA promoter-TSS (NM_006779) promoter-TSS (NM_006779) -329 NM_006779 10435 Hs.343380 NM_006779 ENSG00000149798 CDC42EP2 BORG1|CEP2 CDC42 effector protein 2 protein-coding 1.195 1.890 2.500 0.377 1.445 2.635 0.724 0.350 1.197 0.913 0.264 2.913 2.418 2.441 0.706 0.522 0.412 3.128 2.494 3.249 0.174 0.882 255 chr11 63948749 63956380 + 0 NA promoter-TSS (NM_001282652) promoter-TSS (NM_001282652) -180 NM_001282652 10963 Hs.337295 NM_006819 ENSG00000168439 STIP1 HEL-S-94n|HOP|IEF-SSP-3521|P60|STI1|STI1L stress induced phosphoprotein 1 protein-coding 2.213 0.909 1.674 2.154 3.185 2.002 2.499 1.010 4.009 2.332 0.743 4.019 3.624 5.270 1.926 1.781 1.322 1.621 1.184 1.094 0.933 1.182 359 chr12 89739611 89750381 + 0 NA intron (NM_001946, intron 1 of 2) intron (NM_001946, intron 1 of 2) 1640 NM_001946 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 2.133 0.769 4.407 4.140 7.375 3.625 3.849 0.415 1.555 2.999 1.174 9.681 7.239 1.224 4.363 2.574 2.018 3.513 3.830 0.968 2.925 3.616 182 chr10 63833109 63845686 + 0 NA intron (NM_032199, intron 8 of 9) intron (NM_032199, intron 8 of 9) 30427 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 0.840 0.276 0.140 1.634 1.728 0.290 1.136 0.362 1.086 0.778 1.116 3.580 2.049 0.563 0.473 0.123 0.171 0.704 0.339 0.722 0.943 0.302 1229 chr5 71803136 71810133 + 0 NA Intergenic Intergenic -3385 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DCSCRIPT zinc finger protein 366 protein-coding 0.211 0.301 0.148 0.466 0.127 0.022 0.998 2.226 2.688 0.240 0.071 0.132 0.308 0.330 0.967 0.223 0.317 2.872 0.819 0.622 0.539 0.814 108 chr1 164739314 164743249 + 0 NA intron (NR_038072, intron 1 of 3) intron (NR_038072, intron 1 of 3) 2597 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 1.814 2.771 0.338 0.145 3.960 3.002 2.630 1.230 5.576 4.429 0.950 6.244 5.425 1.693 1.430 0.156 0.311 5.360 0.978 7.833 0.087 3.623 604 chr17 17623583 17633311 + 0 NA intron (NM_030665, intron 2 of 5) CpG-10236 41169 NR_130894 100861516 Hs.624874 NR_130894 ENSG00000237328 RAI1-AS1 - RAI1 antisense RNA 1 ncRNA 1.095 0.471 0.060 0.143 0.354 0.110 0.334 0.074 0.117 0.315 0.098 5.230 0.714 0.502 1.385 0.048 0.070 0.487 0.579 0.059 0.175 1001 chr21 33782950 33817437 + 0 NA intron (NM_001320744, intron 1 of 5) intron (NM_001320744, intron 1 of 5) 15448 NR_104472 59271 Hs.208358 NM_058187 ENSG00000166979 EVA1C B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21 eva-1 homolog C protein-coding 0.214 0.445 0.373 0.440 0.278 1.835 0.438 0.018 0.075 0.899 0.703 2.091 5.859 0.565 0.143 0.264 0.224 0.645 0.046 0.918 0.129 0.082 556 chr16 67203086 67214135 + 0 NA TTS (NM_001040715) TTS (NM_001040715) 854 NM_003946 8996 Hs.513667 NM_003946 ENSG00000140939 NOL3 ARC|FCM|MYP|NOP|NOP30 nucleolar protein 3 protein-coding 2.388 0.336 2.026 1.442 2.078 1.518 1.695 0.483 0.951 2.557 1.468 6.324 4.492 0.904 0.911 0.828 0.515 0.632 1.554 0.524 0.735 0.692 717 chr18 104868 112852 + 0 NA promoter-TSS (NR_033770) promoter-TSS (NR_033770) -205 NR_033770 727758 Hs.585843 NR_033770 ENSG00000263006 ROCK1P1 - Rho associated coiled-coil containing protein kinase 1 pseudogene 1 pseudo 4.833 0.280 2.857 22.755 4.060 1.294 2.087 0.140 1.371 4.563 3.117 3.653 3.786 2.164 2.366 0.861 0.745 0.442 0.345 1.393 2.120 0.937 232 chr11 34698733 34708219 + 0 NA Intergenic Intergenic 49465 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 1.133 0.196 0.249 0.180 0.502 0.635 1.062 0.720 1.407 0.832 7.646 0.727 0.653 0.106 0.143 0.025 0.065 0.711 0.682 0.281 0.182 0.469 477 chr15 67035911 67073413 + 0 NA intron (NR_027654, intron 4 of 4) intron (NR_027654, intron 4 of 4) 59988 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 0.233 0.223 2.211 1.260 1.680 1.187 3.192 0.274 0.750 0.313 0.383 1.274 0.174 0.384 0.250 0.285 0.294 0.969 0.198 0.398 0.931 0.139 815 chr19 50143942 50146389 + 0 NA promoter-TSS (NM_021228) promoter-TSS (NM_021228) -217 NM_021228 58506 Hs.103521 NM_021228 ENSG00000126461 SCAF1 SRA1 SR-related CTD associated factor 1 protein-coding 12.140 4.300 8.159 2.970 9.097 6.645 8.032 2.563 12.794 10.999 2.246 12.371 14.016 4.226 6.847 1.698 0.965 7.554 4.627 7.475 2.277 2.844 1338 chr6 45395623 45416429 + 0 NA intron (NM_001015051, intron 5 of 7) intron (NM_001015051, intron 5 of 7) 15712 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 0.441 0.232 0.272 0.579 0.652 1.012 2.169 1.056 4.568 0.265 0.230 0.820 1.512 0.328 0.561 0.969 1.921 1.564 0.666 0.540 1.466 0.677 671 chr17 48498505 48504486 + 0 NA Intergenic Intergenic -2024 NM_001288968 80221 Hs.288959 NM_025149 ENSG00000167107 ACSF2 ACSMW|AVYV493 acyl-CoA synthetase family member 2 protein-coding 1.586 0.455 1.315 0.901 1.933 0.411 4.653 0.724 1.480 1.030 0.618 3.320 2.521 1.494 1.439 0.376 0.478 1.127 1.266 0.506 0.394 4.164 1511 chr8 116488850 116503715 + 0 NA intron (NM_001330599, intron 4 of 5) intron (NM_001330599, intron 4 of 5) 183957 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 0.266 0.017 0.052 1.460 0.300 0.083 0.177 0.010 0.111 0.250 0.234 0.243 0.089 0.077 0.718 1.448 0.023 0.027 0.037 3.608 0.057 1182 chr4 87854274 87859777 + 0 NA intron (NM_001166693, intron 1 of 20) CpG 871 NM_001166693 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 4.632 2.475 0.885 2.468 1.415 1.621 2.913 0.982 4.369 2.747 0.595 2.949 6.220 2.555 1.644 1.284 1.205 2.466 2.818 5.236 1.128 3.568 225 chr11 13180093 13192486 + 0 NA Intergenic Intergenic -112985 NM_001030273 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 0.124 0.020 0.111 0.107 1.938 0.068 0.118 0.125 0.266 1.513 0.376 4.321 0.593 0.034 0.084 0.012 0.020 0.033 0.000 0.087 0.046 0.091 1447 chr7 102144162 102159276 + 0 NA intron (NM_001277335, intron 2 of 19) intron (NM_001277335, intron 2 of 19) 6505 NM_001277335 100271927 Hs.530089 NM_001277335 ENSG00000170667 RASA4B - RAS p21 protein activator 4B protein-coding 1.590 0.328 0.372 0.198 1.375 0.291 0.437 0.322 0.466 2.003 0.611 3.963 5.120 1.167 0.888 0.273 0.595 0.881 0.461 0.565 0.107 0.187 330 chr12 31225712 31228750 + 0 NA promoter-TSS (NR_038927) promoter-TSS (NR_038927) -450 NR_038927 100506660 Hs.586774 NR_038927 ENSG00000245614 DDX11-AS1 CONCR DDX11 antisense RNA 1 ncRNA 4.852 0.774 3.693 3.536 9.371 3.121 4.669 0.367 2.653 4.869 2.611 7.269 8.332 2.331 7.450 2.286 2.118 4.668 4.826 1.693 1.931 1.868 142 chr1 234733455 234756465 + 0 NA exon (NM_182972, exon 1 of 2) exon (NM_182972, exon 1 of 2) 311 NM_182972 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 3.546 0.682 3.221 6.378 5.774 2.313 4.167 1.305 4.323 6.346 2.004 6.907 9.654 2.734 3.619 2.627 2.505 2.789 2.448 1.273 5.477 2.951 207 chr11 205947 210637 + 0 NA promoter-TSS (NM_016526) promoter-TSS (NM_016526) 781 NM_021932 60626 Hs.592292 NM_021932 ENSG00000177963 RIC8A RIC8 RIC8 guanine nucleotide exchange factor A protein-coding 4.063 2.481 4.001 3.260 5.006 2.862 5.300 1.373 8.010 6.637 1.415 8.823 6.722 3.892 2.741 1.526 1.084 5.038 1.599 2.843 1.813 1.362 1510 chr8 116450675 116482476 + 0 NA intron (NM_001330599, intron 4 of 5) intron (NM_001330599, intron 4 of 5) 213664 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 0.216 0.047 0.143 3.727 0.285 0.065 0.906 0.002 0.124 0.251 0.015 0.392 0.273 0.102 0.172 0.565 1.286 0.083 0.022 0.120 4.628 0.045 167 chr10 14994766 15003813 + 0 NA Intergenic MIR|SINE|MIR -2149 NM_001080836 644890 Hs.257249 NM_001080836 ENSG00000197889 MEIG1 SPATA39|bA2K17.3 meiosis/spermiogenesis associated 1 protein-coding 1.945 0.602 2.067 1.972 4.920 1.573 1.145 1.379 6.411 2.201 0.585 4.330 3.143 1.522 1.387 1.154 0.808 1.364 1.438 1.151 1.558 3.008 48 chr1 45239883 45244029 + 0 NA promoter-TSS (NR_000024) promoter-TSS (NR_000024) -208 NR_000024 94161 NR_000024 ENSG00000200913 SNORD46 RNU40|RNU46|U40|U46 small nucleolar RNA, C/D box 46 snoRNA 3.250 1.702 1.480 13.620 5.273 2.466 5.452 0.985 4.993 5.172 0.949 5.850 11.412 2.597 1.535 1.338 1.874 2.502 1.134 2.363 7.783 1.528 360 chr12 89761933 89770672 + 0 NA Intergenic Intergenic -19666 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 0.231 0.298 0.246 0.086 1.458 0.522 1.414 0.081 0.149 1.076 0.646 5.169 0.449 0.246 2.180 0.009 0.125 0.899 0.552 0.549 0.072 1.782 692 chr17 66507370 66510121 + 0 NA intron (NM_212472, intron 1 of 10) CpG 225 NM_212472 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 4.679 2.115 9.506 3.925 14.105 2.593 7.337 1.364 4.465 4.915 3.213 11.199 10.721 6.699 3.946 2.005 2.134 3.255 2.532 2.593 1.973 2.426 1605 chr9 136213763 136216660 + 0 NA promoter-TSS (NM_133640) promoter-TSS (NM_133640) 142 NM_000972 6130 Hs.499839 NM_000972 ENSG00000148303 RPL7A L7A|SURF3|TRUP ribosomal protein L7a protein-coding 4.336 1.966 9.260 4.055 10.453 3.741 4.280 1.847 10.261 9.888 2.166 8.019 7.651 2.274 1.702 4.439 2.859 4.566 2.299 2.493 2.516 1.341 663 chr17 46686738 46691883 + 0 NA promoter-TSS (NM_004502) promoter-TSS (NM_004502) -927 NM_004502 3217 Hs.436181 NM_004502 ENSG00000260027 HOXB7 HHO.C1|HOX2|HOX2C|Hox-2.3 homeobox B7 protein-coding 4.445 5.310 3.502 5.901 2.842 3.097 0.121 0.627 4.474 1.233 0.224 12.062 3.283 3.816 5.087 4.272 0.079 0.017 3.614 0.073 854 chr2 70307507 70323718 + 0 NA exon (NM_006196, exon 1 of 1) exon (NM_006196, exon 1 of 1) 1027 NM_006196 5093 Hs.2853 NM_006196 ENSG00000169564 PCBP1 HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X poly(rC) binding protein 1 protein-coding 3.153 0.840 3.094 4.274 3.087 1.431 3.491 0.719 3.424 5.155 1.231 3.385 5.040 1.909 2.316 2.040 2.028 2.467 1.407 1.771 3.520 1.999 969 chr20 48643409 48651758 + 0 NA Intergenic AluSz|SINE|Alu 10583 NR_051976 100887755 Hs.195705 NR_051976 TRERNA1 LINC00651|treRNA translation regulatory long non-coding RNA 1 ncRNA 0.243 0.297 0.439 0.219 0.294 0.124 2.845 2.176 2.422 0.274 0.096 0.441 0.404 1.034 0.400 0.037 0.072 1.301 0.734 0.791 0.041 0.396 1174 chr4 75402570 75412566 + 0 NA Intergenic Intergenic -73023 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 0.309 0.087 0.154 0.118 0.198 0.085 0.270 0.024 0.101 0.411 0.266 0.639 0.190 0.042 0.271 0.159 0.341 0.276 0.086 0.219 0.104 3.722 1076 chr3 57184536 57199636 + 0 NA intron (NM_001318864, intron 2 of 13) intron (NM_001318864, intron 2 of 13) 7341 NM_017563 54756 Hs.150725 NM_017563 ENSG00000144730 IL17RD HH18|IL-17RD|IL17RLM|SEF interleukin 17 receptor D protein-coding 0.143 0.090 0.165 0.248 0.369 0.417 0.157 0.115 0.156 0.240 0.048 0.162 0.103 0.173 2.892 3.215 0.018 0.008 0.059 0.344 0.068 766 chr19 23718037 23740528 + 0 NA Intergenic AluSp|SINE|Alu -130406 NR_126448 104472717 Hs.162105 NR_126448 ENSG00000269416 LINC01224 - long intergenic non-protein coding RNA 1224 ncRNA 0.815 0.390 0.964 0.052 0.256 0.023 0.791 2.567 7.619 0.310 0.197 0.113 0.100 1.039 0.060 0.011 0.011 0.176 0.013 0.877 0.050 1.814 510 chr15 96806022 96820404 + 0 NA non-coding (NR_102743, exon 7 of 8) non-coding (NR_102743, exon 7 of 8) -55944 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 0.268 0.827 0.342 0.082 0.611 0.967 0.258 0.059 0.239 0.229 0.140 1.133 0.078 0.526 0.600 0.021 0.051 3.264 0.111 2.207 0.048 4.439 393 chr13 95357494 95366703 + 0 NA 3' UTR (NM_007084, exon 1 of 1) 3' UTR (NM_007084, exon 1 of 1) -1358 NR_120417 101927248 Hs.626095 NR_120417 LOC101927248 - uncharacterized LOC101927248 ncRNA 2.056 0.013 0.085 7.477 0.330 0.017 0.122 0.077 0.552 1.228 0.840 3.446 1.976 0.031 1.274 2.576 1.737 0.003 0.085 5.818 0.030 449 chr14 96712181 96725362 + 0 NA Intergenic Intergenic -3776 NM_000710 623 Hs.525572 NM_000710 ENSG00000100739 BDKRB1 B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1 bradykinin receptor B1 protein-coding 0.124 1.366 0.199 0.065 1.520 0.046 0.119 1.876 3.623 1.207 0.086 0.636 0.205 0.043 0.128 0.833 0.008 2.596 0.061 0.072 1501 chr8 97271434 97286060 + 0 NA intron (NM_001290225, intron 1 of 10) intron (NM_001290225, intron 1 of 10) 4633 NM_001290225 9791 Hs.292579 NM_014754 ENSG00000156471 PTDSS1 LMHD|PSS1|PSSA phosphatidylserine synthase 1 protein-coding 0.749 0.339 0.442 1.150 3.369 0.991 1.109 0.476 1.683 1.027 0.832 2.928 7.545 0.525 0.582 0.969 0.794 0.426 0.729 0.398 0.573 0.325 658 chr17 46122022 46134950 + 0 NA exon (NM_003204, exon 2 of 6) exon (NM_003204, exon 2 of 6) 2800 NM_003204 4779 Hs.514284 NM_003204 ENSG00000082641 NFE2L1 LCR-F1|NRF1|TCF11 nuclear factor, erythroid 2 like 1 protein-coding 2.181 1.063 1.841 5.135 5.361 1.108 3.508 0.658 2.632 4.287 2.524 4.667 7.269 2.192 1.167 1.405 1.477 1.073 0.610 1.851 1.184 0.539 274 chr11 67138070 67153317 + 0 NA intron (NR_024469, intron 2 of 3) AluY|SINE|Alu -4045 NM_001166212 23529 Hs.502977 NM_013246 ENSG00000175505 CLCF1 BSF-3|BSF3|CISS2|CLC|NNT-1|NNT1|NR6 cardiotrophin-like cytokine factor 1 protein-coding 3.354 1.316 2.153 0.323 1.373 1.691 2.650 1.226 3.183 2.193 0.622 3.381 1.646 2.575 1.909 0.556 0.310 4.188 2.771 1.814 0.106 5.908 1574 chr9 100635584 100655904 + 0 NA Intergenic L1MB7|LINE|L1 30207 NM_004473 2304 Hs.159234 NM_004473 ENSG00000178919 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 forkhead box E1 protein-coding 0.215 0.091 0.140 0.073 1.475 0.133 0.395 0.255 0.743 1.281 3.384 0.317 5.005 0.169 0.132 0.085 0.088 1.318 0.271 0.243 0.051 0.065 1579 chr9 107037885 107050237 + 0 NA intron (NR_135141, intron 2 of 3) intron (NR_135141, intron 2 of 3) 11551 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 0.121 0.703 0.076 0.078 0.141 0.012 0.148 0.928 4.791 0.183 0.040 0.084 0.226 0.136 0.042 0.012 0.020 0.285 0.010 2.462 0.037 0.031 549 chr16 50394387 50441902 + 0 NA Intergenic AluSc8|SINE|Alu -15299 NM_001173984 29117 Hs.437894 NM_013263 ENSG00000166164 BRD7 BP75|CELTIX1|NAG4 bromodomain containing 7 protein-coding 0.383 0.122 0.212 9.781 0.723 0.250 0.132 0.056 0.129 0.425 0.083 0.430 0.512 0.252 0.143 0.905 0.852 0.054 0.074 0.195 8.272 0.079 877 chr2 121681334 121707220 + 0 NA intron (NM_005270, intron 2 of 12) intron (NM_005270, intron 2 of 12) 139410 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 0.239 0.273 0.268 0.165 0.758 0.993 0.531 0.287 0.401 2.249 2.296 0.802 7.549 0.364 0.269 0.159 0.182 1.147 0.046 0.650 0.066 0.085 659 chr17 46167478 46186814 + 0 NA intron (NM_001127228, intron 1 of 4) intron (NM_001127228, intron 1 of 4) 1414 NM_006807 10951 Hs.77254 NM_006807 ENSG00000108468 CBX1 CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|M31|MOD1|p25beta chromobox 1 protein-coding 0.989 0.448 0.936 1.316 2.612 0.709 1.317 0.321 1.219 2.076 1.320 1.632 6.148 0.944 0.651 0.696 0.537 0.866 0.497 0.833 0.762 0.785 1508 chr8 103750278 103770407 + 0 NA Intergenic L2c|LINE|L2 -92212 NM_005655 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 0.266 0.292 0.267 0.208 0.875 1.059 1.057 1.630 3.157 1.061 0.666 1.703 0.868 0.821 0.243 0.062 0.103 0.671 0.545 0.466 0.086 0.163 1141 chr3 184077971 184083072 + 0 NA promoter-TSS (NM_001278714) intron (NM_001346879, intron 1 of 4) -250 NM_001278698 5437 Hs.432574 NM_006232 ENSG00000163882 POLR2H RPABC3|RPB17|RPB8 RNA polymerase II subunit H protein-coding 3.114 1.869 4.476 6.051 nan 1.657 5.165 1.633 6.883 7.665 3.974 14.465 15.896 3.016 1.386 3.986 2.537 2.911 3.104 1.699 2.957 2.684 1128 chr3 177194585 177197749 + 0 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 36458 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 1.023 0.743 1.530 0.471 7.583 0.189 3.573 1.580 5.789 10.348 3.415 4.867 11.889 0.393 1.281 0.324 0.074 3.572 0.645 2.223 0.901 2.343 682 chr17 58601688 58604540 + 0 NA intron (NM_006380, intron 1 of 12) CpG 487 NM_006380 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 4.099 2.195 8.927 4.977 9.350 3.054 5.951 1.482 7.291 5.808 2.385 6.344 14.198 6.228 2.177 1.705 2.218 3.110 1.720 3.859 2.914 1.796 353 chr12 65990817 66005334 + 0 NA intron (NR_120434, intron 2 of 4) intron (NR_120434, intron 2 of 4) 38077 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 0.266 0.256 0.733 0.044 3.286 0.570 0.748 0.060 0.309 0.970 0.271 4.049 0.892 0.164 1.274 0.060 0.084 4.584 2.283 0.913 0.063 2.485 375 chr12 123180452 123216083 + 0 NA Intergenic Intergenic 3172 NM_006018 8843 Hs.458425 NM_006018 ENSG00000255398 HCAR3 GPR109B|HCA3|HM74|PUMAG|Puma-g hydroxycarboxylic acid receptor 3 protein-coding 1.354 0.125 0.120 0.087 1.349 0.103 0.333 0.046 0.116 0.737 0.889 2.610 1.062 0.189 0.523 0.044 0.047 0.252 0.560 0.213 0.029 1.299 984 chr20 52267988 52281658 + 0 NA Intergenic Intergenic 49930 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 0.374 0.072 0.732 2.361 0.823 0.346 1.540 0.767 0.952 0.453 0.569 1.299 1.107 0.579 0.716 0.796 1.191 0.533 0.022 0.106 4.770 2.147 1155 chr3 189897439 189907500 + 0 NA Intergenic Intergenic -62243 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 0.362 0.197 0.163 0.181 nan 0.053 1.046 2.782 6.994 1.917 0.105 0.662 0.660 0.380 0.238 0.047 0.108 0.795 0.067 0.320 0.110 0.366 946 chr20 30278064 30319639 + 0 NA intron (NR_134257, intron 1 of 2) MIRb|SINE|MIR -10459 NR_131907 103021294 NR_131907 ENSG00000281376 ABALON INXS apoptotic BCL2L1-antisense long non-coding RNA ncRNA 2.651 1.091 6.869 2.287 3.221 4.574 4.066 1.094 3.291 1.519 1.496 3.972 2.397 2.044 1.644 0.714 0.619 6.677 4.118 2.605 1.794 3.246 1485 chr8 57226730 57233683 + 0 NA intron (NM_001318050, intron 1 of 5) intron (NM_001318050, intron 1 of 5) 3129 NM_001318049 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 0.498 0.036 0.213 1.085 0.951 0.055 0.328 0.049 2.088 0.188 0.634 0.091 0.132 1.214 3.183 3.588 0.095 0.542 0.032 0.875 0.135 788 chr19 41107013 41121159 + 0 NA intron (NM_001042545, intron 7 of 30) intron (NM_001042545, intron 7 of 30) 6809 NM_001042545 8425 Hs.466766 NM_003573 ENSG00000090006 LTBP4 ARCL1C|LTBP-4|LTBP4L|LTBP4S latent transforming growth factor beta binding protein 4 protein-coding 3.139 0.648 1.191 0.265 1.909 1.000 1.241 0.411 0.960 1.057 0.634 3.209 4.506 1.306 1.221 0.145 0.119 0.963 0.528 0.748 0.106 0.476 128 chr1 222128945 222172867 + 0 NA Intergenic HERVH-int|LTR|ERV1 -136898 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 1.390 0.034 0.104 0.131 0.208 0.141 1.476 1.003 3.788 0.451 0.110 0.631 0.289 0.932 0.849 0.173 0.309 1.184 0.132 0.068 0.101 2.344 1520 chr8 128744633 128756762 + 0 NA exon (NM_002467, exon 2 of 3) exon (NM_002467, exon 2 of 3) 2382 NM_002467 4609 Hs.202453 NM_002467 ENSG00000136997 MYC MRTL|MYCC|bHLHe39|c-Myc v-myc avian myelocytomatosis viral oncogene homolog protein-coding 45.999 1.634 4.200 5.625 7.732 3.405 8.690 1.611 8.510 4.398 1.785 6.118 13.924 3.540 2.097 3.971 3.554 2.156 3.155 2.940 2.700 1.701 303 chr12 3067010 3070152 + 0 NA promoter-TSS (NM_201443) promoter-TSS (NM_201443) 103 NM_201441 7004 Hs.94865 NM_003213 ENSG00000197905 TEAD4 EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B TEA domain transcription factor 4 protein-coding 8.104 4.017 2.167 1.341 3.450 3.369 3.775 0.695 3.514 5.163 3.589 8.104 5.440 3.885 1.590 3.350 2.011 4.894 2.568 5.006 1.558 1.471 250 chr11 62486397 62498795 + 0 NA intron (NM_001079559, intron 1 of 13) intron (NM_001079559, intron 1 of 13) 2260 NR_037946 100534595 Hs.533709 NR_037946 ENSG00000234857 HNRNPUL2-BSCL2 - HNRNPUL2-BSCL2 readthrough (NMD candidate) ncRNA 2.414 0.879 2.050 3.447 6.353 2.354 3.326 0.887 3.931 3.261 1.080 4.113 6.651 2.122 2.170 1.564 1.306 2.127 1.821 1.606 2.208 1.768 1361 chr6 111802333 111806505 + 0 NA promoter-TSS (NR_034111) promoter-TSS (NR_034111) -256 NR_034109 643749 Hs.486228 NR_034108 ENSG00000231889 TRAF3IP2-AS1 C6UAS|C6orf3|NCRNA00248|TRAF3IP2-AS2 TRAF3IP2 antisense RNA 1 ncRNA 5.135 3.179 2.405 5.820 9.735 4.545 8.180 1.224 5.600 3.493 1.501 8.833 5.888 5.341 3.409 4.373 2.519 5.984 2.224 4.968 3.701 1.811 614 chr17 27272868 27280214 + 0 NA intron (NM_020889, intron 2 of 8) CpG 1967 NM_001033561 57649 Hs.444173 NM_020889 ENSG00000109118 PHF12 PF1 PHD finger protein 12 protein-coding 3.354 1.281 5.905 6.375 5.930 1.835 5.339 1.972 10.131 4.549 1.877 6.552 6.742 2.731 2.532 2.687 2.314 3.161 1.075 1.797 3.553 1.897 501 chr15 80768799 80792166 + 0 NA intron (NM_014862, intron 5 of 18) intron (NM_014862, intron 5 of 18) 74803 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 0.141 1.569 0.103 0.180 0.174 0.042 2.401 1.891 5.418 0.267 0.276 0.243 0.333 0.577 0.115 0.051 0.083 1.382 3.816 0.054 0.147 1313 chr6 30776844 30798360 + 0 NA intron (NR_130726, intron 1 of 1) L2|LINE|L2 10834 NR_130726 401247 NR_130726 ENSG00000214894 LINC00243 C6orf214|NCRNA00243 long intergenic non-protein coding RNA 243 ncRNA 1.863 0.271 1.054 0.400 3.344 0.989 0.782 1.028 1.054 2.486 2.580 7.177 6.553 0.461 0.494 0.185 0.288 1.149 0.812 0.581 0.290 0.772 278 chr11 77749899 77752905 + 0 NA intron (NM_001203262, intron 1 of 2) T-rich|Low_complexity|Low_complexity 5835 NM_001282406 65987 Hs.709780 NM_023930 ENSG00000151364 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding 1.607 2.554 0.569 0.178 0.916 2.631 7.003 2.495 12.605 0.493 0.210 1.780 0.446 1.610 2.679 0.180 0.107 8.223 1.649 5.395 0.397 8.003 1617 chr9 140499041 140503525 + 0 NA intron (NM_152285, intron 1 of 7) intron (NM_152285, intron 1 of 7) 1191 NM_152285 92714 Hs.12999 NM_152285 ENSG00000197070 ARRDC1 - arrestin domain containing 1 protein-coding 1.959 0.607 5.463 0.644 2.154 1.142 1.203 0.456 0.737 1.845 0.334 2.715 1.535 1.129 1.438 0.990 0.753 0.706 0.665 0.366 0.179 0.586 490 chr15 71996907 72002654 + 0 NA intron (NM_001286429, intron 2 of 11) intron (NM_001286429, intron 2 of 11) -15902 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 0.178 2.197 0.177 0.610 0.284 0.328 0.145 0.096 0.277 0.183 0.126 0.273 0.108 0.134 0.036 0.041 0.103 0.176 0.015 5.556 0.443 0.032 130 chr1 224032185 224034957 + 0 NA 5' UTR (NM_005426, exon 1 of 19) 5' UTR (NM_005426, exon 1 of 19) 103 NM_001031685 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 5.405 1.161 3.355 4.929 8.787 2.384 5.211 2.395 8.313 12.997 2.560 10.109 12.115 5.907 4.422 3.957 2.461 4.927 2.167 1.377 3.694 3.107 155 chr10 2143444 2200343 + 0 NA Intergenic Intergenic -53610 NR_106720 102465944 NR_106720 ENSG00000278069 MIR6072 hsa-mir-6072 microRNA 6072 ncRNA 0.167 0.039 0.178 0.064 4.826 0.073 0.021 0.056 0.138 0.182 0.018 0.253 0.057 0.118 0.170 0.011 0.019 0.010 0.007 0.096 0.016 0.116 1373 chr6 143264658 143269117 + 0 NA promoter-TSS (NM_006734) promoter-TSS (NM_006734) -549 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 3.385 3.272 1.468 1.659 3.542 1.610 6.767 1.484 4.723 4.032 0.871 6.795 5.376 5.147 2.729 2.653 1.772 4.014 3.157 3.819 0.994 1.711 387 chr13 73676910 73884880 + 0 NA Intergenic Intergenic 147965 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 0.862 0.037 0.109 0.111 4.375 0.113 0.059 0.048 0.246 0.839 0.221 0.726 0.803 0.072 0.147 0.072 0.109 0.086 0.064 0.077 0.068 0.167 53 chr1 59034615 59051410 + 0 NA 5' UTR (NM_002353, exon 1 of 1) 5' UTR (NM_002353, exon 1 of 1) 154 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor-associated calcium signal transducer 2 protein-coding 2.078 0.166 0.147 0.239 1.820 1.238 3.134 0.561 2.026 1.616 0.814 3.602 1.433 0.180 0.744 0.676 0.787 3.179 2.256 0.404 0.390 4.567 1465 chr8 9408231 9439776 + 0 NA intron (NM_003747, intron 1 of 26) intron (NM_003747, intron 1 of 26) 10558 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 0.365 0.122 0.230 7.293 0.398 0.087 0.215 0.077 0.368 0.236 0.076 0.404 0.458 0.227 0.244 0.177 0.146 0.181 0.090 0.159 7.251 0.138 1302 chr6 18259905 18266567 + 0 NA intron (NM_003472, intron 2 of 10) intron (NM_003472, intron 2 of 10) 1563 NM_003472 7913 Hs.484813 NM_003472 ENSG00000124795 DEK D6S231E DEK proto-oncogene protein-coding 2.096 1.245 2.228 3.190 5.597 2.664 3.677 2.172 8.798 2.866 2.073 1.526 4.864 3.475 1.564 1.779 1.348 3.861 1.569 1.970 2.353 3.839 1112 chr3 158426058 158433555 + 0 NA intron (NM_002888, intron 2 of 3) intron (NM_002888, intron 2 of 3) 20469 NM_002888 5918 Hs.131269 NM_002888 ENSG00000118849 RARRES1 LXNL|PERG-1|TIG1 retinoic acid receptor responder 1 protein-coding 0.353 0.958 0.194 0.157 0.316 0.101 2.229 1.771 3.064 0.447 0.087 0.170 0.166 0.460 0.305 0.063 0.115 1.579 0.045 2.636 0.125 0.296 626 chr17 36100071 36106832 + 0 NA intron (NM_001304286, intron 1 of 6) CpG 1618 NM_001304286 6928 Hs.191144 NM_000458 ENSG00000275410 HNF1B FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1 HNF1 homeobox B protein-coding 0.095 0.018 9.300 0.300 0.199 0.090 6.590 0.011 0.062 0.241 0.023 0.168 0.155 0.020 0.494 0.114 0.107 0.020 0.367 0.046 0.051 6.770 1397 chr7 21207160 21213012 + 0 NA Intergenic Intergenic -257566 NM_001326543 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 0.056 0.021 0.185 0.621 0.067 0.095 0.100 0.046 0.591 0.068 0.209 0.328 0.119 0.071 1.917 3.606 0.012 0.007 0.097 2.365 0.097 1294 chr6 14731177 14736670 + 0 NA Intergenic Intergenic -448238 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 1.855 0.135 0.372 0.299 1.076 2.659 4.049 2.399 2.793 2.197 1.205 1.398 5.811 0.445 2.294 0.112 0.242 5.658 11.249 0.449 0.189 8.598 941 chr20 22740991 22747100 + 0 NA Intergenic Intergenic -155890 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LINC01384 - long intergenic non-protein coding RNA 1384 ncRNA 0.214 1.257 0.135 0.070 0.376 1.664 3.103 2.288 3.577 1.628 2.469 3.482 0.354 1.223 0.240 0.125 5.194 0.055 3.085 0.019 0.922 461 chr15 31616457 31621467 + 0 NA promoter-TSS (NM_001302461) promoter-TSS (NM_001302461) -96 NM_001302461 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 0.468 0.741 6.452 2.841 10.142 1.340 2.268 0.593 1.430 4.281 1.754 7.114 5.261 2.241 1.387 4.610 2.205 0.866 1.204 0.756 1.789 0.702 583 chr16 89785037 89789586 + 0 NA promoter-TSS (NR_110122) promoter-TSS (NR_110122) -82 NM_152287 92822 Hs.290154 NM_152287 ENSG00000158805 ZNF276 CENP-Z|CENPZ|ZADT|ZFP276|ZNF477 zinc finger protein 276 protein-coding 3.941 1.579 4.686 2.137 8.249 1.589 4.279 1.247 4.564 5.591 1.910 10.159 7.838 2.022 2.568 4.282 2.017 1.282 2.191 2.522 0.905 1.476 1562 chr9 37455464 37473939 + 0 NA intron (NM_014872, intron 1 of 1) intron (NM_014872, intron 1 of 1) 706 NM_014872 9925 Hs.161276 NM_014872 ENSG00000168795 ZBTB5 - zinc finger and BTB domain containing 5 protein-coding 1.104 0.677 1.593 1.820 3.717 0.870 1.072 0.711 3.067 2.388 0.600 1.416 6.190 1.197 1.134 0.724 0.762 1.613 1.189 1.409 1.394 1.025 1426 chr7 73988461 74027578 + 0 NA intron (NM_001199207, intron 24 of 26) AluY|SINE|Alu -63972 NM_032999 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 1.525 0.130 0.427 0.230 1.366 0.299 1.987 0.265 0.684 1.322 0.325 2.002 1.573 1.247 0.573 0.178 0.207 0.860 0.127 0.257 0.192 0.652 257 chr11 64011763 64015407 + 0 NA promoter-TSS (NR_135086) promoter-TSS (NR_135086) 247 NR_135087 105369340 Hs.697228 NR_135086 ENSG00000256940 LOC105369340 - uncharacterized LOC105369340 ncRNA 6.002 2.344 5.348 4.342 7.155 3.076 7.085 1.270 5.879 5.059 1.601 11.011 7.000 2.407 4.661 3.467 2.130 6.527 5.503 3.392 2.877 3.562 1358 chr6 106531908 106537012 + 0 NA exon (NM_001198, exon 1 of 7) exon (NM_001198, exon 1 of 7) 265 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 0.416 0.049 0.219 0.866 0.485 1.129 1.658 0.200 0.386 0.768 0.555 1.020 1.722 1.137 0.469 2.003 2.621 1.731 0.059 0.065 0.752 0.450 951 chr20 32250686 32263080 + 0 NA TTS (NM_001024675) TTS (NM_001024675) 2579 NM_001024675 170487 Hs.592151 NM_001024675 ENSG00000182584 ACTL10 C20orf134|dJ63M2.2 actin like 10 protein-coding 2.991 0.556 2.090 1.739 1.882 0.877 2.712 0.855 2.255 1.369 0.853 5.435 3.440 2.071 1.240 0.810 0.605 0.781 0.407 0.594 0.898 0.506 782 chr19 39420166 39422828 + 0 NA promoter-TSS (NM_017827) promoter-TSS (NM_017827) 39 NM_001145901 54938 Hs.709416 NM_017827 ENSG00000104835 SARS2 SARS|SARSM|SERS|SYS|SerRS|SerRSmt|mtSerRS seryl-tRNA synthetase 2, mitochondrial protein-coding 4.248 1.163 13.172 4.733 4.819 3.305 6.300 1.016 4.993 4.831 2.235 4.654 7.465 1.947 1.516 0.937 1.050 1.426 1.787 1.928 2.294 1.027 85 chr1 152158317 152162674 + 0 NA Intergenic MER4C|LTR|ERV1 -28791 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 0.244 2.394 0.084 0.074 0.237 0.159 0.106 1.005 3.624 0.218 0.222 0.322 0.462 0.657 0.409 0.134 0.190 1.295 0.029 4.149 0.104 809 chr19 48216098 48233727 + 0 NA intron (NM_014601, intron 3 of 5) MIR|SINE|MIR 8311 NM_014601 30846 Hs.744963 NM_014601 ENSG00000024422 EHD2 PAST2 EH domain containing 2 protein-coding 1.915 1.026 0.581 0.109 2.506 0.633 1.627 0.655 2.793 1.515 0.602 2.575 1.028 2.014 0.816 0.053 0.052 2.311 0.334 1.748 0.039 1.011 1156 chr3 193847540 193861838 + 0 NA intron (NM_005524, intron 2 of 3) CpG 758 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 3.380 1.349 3.461 5.145 10.338 1.273 3.078 1.291 2.160 4.449 4.127 8.654 nan 1.235 1.993 2.322 1.797 0.626 2.346 2.709 5.736 2.385 1557 chr9 32524724 32527717 + 0 NA 5' UTR (NM_014314, exon 1 of 18) 5' UTR (NM_014314, exon 1 of 18) 102 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 0.864 0.538 4.770 1.179 3.194 0.764 4.216 0.762 6.540 1.499 0.405 4.163 1.891 2.473 4.799 1.377 0.835 1.523 2.815 0.667 1.192 1.384 1486 chr8 59711343 59722720 + 0 NA TTS (NM_014729) TTS (NM_014729) -144627 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 0.276 0.087 0.566 0.094 1.356 0.308 1.314 1.761 5.870 0.229 0.072 0.140 0.182 0.592 0.476 0.072 0.243 0.584 1.885 0.196 0.070 0.480 425 chr14 57351454 57380551 + 0 NA intron (NR_029385, intron 3 of 3) intron (NR_029385, intron 3 of 3) 86101 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 0.282 0.021 0.150 0.867 0.268 0.029 0.057 0.019 0.040 0.194 0.023 0.181 0.276 0.048 0.047 0.304 0.739 0.012 0.006 0.046 4.156 0.045 591 chr17 7379484 7383761 + 0 NA intron (NM_020899, intron 1 of 3) intron (NM_020899, intron 1 of 3) 1322 NM_001128833 57659 Hs.35096 NM_020899 ENSG00000174282 ZBTB4 KAISO-L1|ZNF903 zinc finger and BTB domain containing 4 protein-coding 2.517 0.966 1.556 1.754 8.104 2.449 1.865 1.196 2.837 3.452 1.224 5.532 2.883 3.924 4.546 1.785 0.803 1.009 0.212 1.519 0.667 0.816 832 chr2 17718523 17810896 + 0 NA intron (NM_003385, intron 1 of 3) intron (NM_003385, intron 1 of 3) 42902 NM_003385 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 0.332 0.031 0.121 4.643 1.683 0.061 0.069 0.010 0.037 1.101 0.260 1.063 0.605 0.104 0.122 0.873 1.317 0.027 0.066 0.086 4.948 0.058 736 chr19 750415 754622 + 0 NA intron (NR_135168, intron 1 of 3) AluY|SINE|Alu 1405 NR_135168 126353 Hs.439180 NM_173481 ENSG00000099812 MISP C19orf21|MISP1 mitotic spindle positioning protein-coding 3.840 2.121 6.389 0.686 6.269 8.894 2.874 0.484 2.080 0.744 0.381 6.236 0.295 2.841 2.047 0.483 0.563 11.967 2.397 4.865 0.212 0.614 539 chr16 29815497 29820723 + 0 NA exon (NM_001276276, exon 1 of 3) exon (NM_001276276, exon 1 of 3) 252 NM_001276276 4150 Hs.23650 NM_002383 ENSG00000103495 MAZ PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87 MYC associated zinc finger protein protein-coding 3.485 1.422 5.294 6.676 6.018 3.295 7.094 2.075 6.198 4.376 2.454 9.626 13.864 3.915 2.859 3.336 2.262 4.411 2.208 2.232 3.893 1.630 781 chr19 39389278 39392077 + 0 NA promoter-TSS (NM_030593) promoter-TSS (NM_030593) 107 NM_002503 4793 Hs.9731 NM_002503 ENSG00000104825 NFKBIB IKBB|TRIP9 NFKB inhibitor beta protein-coding 2.622 0.885 9.048 1.451 2.385 1.277 4.034 0.865 2.337 2.587 1.120 2.593 4.519 2.076 1.070 0.365 0.431 0.623 0.624 0.756 0.893 0.573 828 chr19 59068460 59071866 + 0 NA promoter-TSS (NR_027334) promoter-TSS (NR_027334) 180 NM_003969 9040 Hs.406068 NM_003969 ENSG00000130725 UBE2M UBC-RS2|UBC12|hUbc12 ubiquitin conjugating enzyme E2 M protein-coding 6.533 3.246 4.635 4.937 9.508 3.965 5.275 1.541 5.368 6.647 1.992 6.369 11.025 3.906 3.427 2.202 1.781 3.416 3.191 4.059 2.833 1.271 276 chr11 73018815 73021079 + 0 NA exon (NM_014786, exon 1 of 21) exon (NM_014786, exon 1 of 21) 284 NM_014786 9828 Hs.533719 NM_014786 ENSG00000110237 ARHGEF17 P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF Rho guanine nucleotide exchange factor 17 protein-coding 4.589 4.155 5.213 1.869 4.217 5.792 9.568 3.465 12.769 1.425 0.533 10.686 1.860 6.634 4.114 2.752 1.764 7.675 1.593 4.780 0.460 3.377 102 chr1 158978619 158981367 + 0 NA intron (NM_001206567, intron 1 of 10) intron (NM_001206567, intron 1 of 10) 311 NM_001206567 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 0.210 1.486 2.271 0.133 10.861 1.356 3.648 1.209 10.034 1.885 1.086 10.388 5.138 3.182 5.246 0.041 2.655 0.624 2.866 0.207 1.224 520 chr16 726202 736242 + 0 NA TTS (NM_001323918) TTS (NM_001323918) 1111 NM_001293197 10273 Hs.592081 NM_005861 ENSG00000103266 STUB1 CHIP|HSPABP2|NY-CO-7|SCAR16|SDCCAG7|UBOX1 STIP1 homology and U-box containing protein 1 protein-coding 2.272 0.530 1.459 1.385 3.532 0.714 2.933 0.452 1.468 1.696 0.881 5.021 2.773 1.023 1.078 1.150 0.797 0.615 0.375 0.654 0.528 0.386 1218 chr5 36874372 36880557 + 0 NA promoter-TSS (NR_046262) promoter-TSS (NR_046262) 603 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL, cohesin loading factor protein-coding 3.649 2.213 2.810 3.988 8.510 2.362 3.064 2.000 12.143 6.987 2.307 7.460 8.568 5.509 2.289 2.870 2.469 3.034 1.663 4.249 2.569 1.491 532 chr16 4417705 4428861 + 0 NA intron (NM_138440, intron 1 of 1) intron (NM_138440, intron 1 of 1) 1434 NM_138440 114990 Hs.372579 NM_138440 ENSG00000168140 VASN SLITL2 vasorin protein-coding 0.873 1.587 0.262 0.278 0.449 0.267 7.162 0.332 0.993 0.257 0.166 0.900 0.353 2.297 0.554 0.216 0.159 3.012 0.215 2.295 0.165 1.029 1193 chr4 146724792 146731426 + 0 NA intron (NM_001306215, intron 8 of 14) intron (NM_001306215, intron 8 of 14) 126753 NM_001080531 646603 Hs.452865 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 0.342 1.867 0.737 0.123 2.383 0.584 1.619 0.511 1.151 0.731 0.352 0.827 0.370 0.447 0.517 0.059 0.036 1.446 2.480 4.400 0.294 4.911 1404 chr7 27230101 27235783 + 0 NA Intergenic CpG 6783 NM_000522 3209 Hs.592172 NM_000522 ENSG00000106031 HOXA13 HOX1|HOX1J homeobox A13 protein-coding 0.539 0.022 6.583 0.093 0.253 0.135 0.194 0.316 0.339 0.379 0.029 0.360 0.118 0.122 0.146 0.029 0.065 0.013 0.044 0.019 0.021 0.033 55 chr1 59245251 59252956 + 0 NA 5' UTR (NM_002228, exon 1 of 1) 5' UTR (NM_002228, exon 1 of 1) 682 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 1.989 1.906 4.519 2.316 3.022 1.033 4.676 1.555 6.759 2.618 0.951 3.358 7.017 3.696 1.365 1.790 1.347 3.502 2.962 3.104 1.866 3.753 1543 chr8 146051064 146063667 + 0 NA intron (NM_001330623, intron 3 of 4) AluJr|SINE|Alu 4420 NM_001330623 7553 Hs.493218 NM_003416 ENSG00000147789 ZNF7 HF.16|KOX4|zf30 zinc finger protein 7 protein-coding 0.619 0.835 0.439 1.068 2.976 0.670 4.706 2.173 9.917 2.134 0.397 2.109 1.830 4.000 0.686 0.739 0.539 0.522 0.439 1.235 0.403 1.730 57 chr1 67389371 67420046 + 0 NA intron (NM_001077704, intron 1 of 13) intron (NM_001077704, intron 1 of 13) 8782 NM_001077704 57708 Hs.605432 NM_020948 ENSG00000198160 MIER1 ER1|MI-ER1 MIER1 transcriptional regulator protein-coding 0.541 1.223 0.592 0.922 2.551 0.784 2.710 0.403 1.379 0.577 0.141 1.245 1.991 1.794 0.636 0.264 0.300 1.560 0.330 3.517 0.499 1.326 259 chr11 64067913 64074941 + 0 NA intron (NR_133662, intron 10 of 10) intron (NR_133662, intron 10 of 10) -1573 NM_001282451 2101 Hs.110849 NM_004451 ENSG00000173153 ESRRA ERR1|ERRa|ERRalpha|ESRL1|NR3B1 estrogen related receptor alpha protein-coding 3.002 0.705 1.302 2.571 4.882 1.213 3.163 0.720 2.291 2.270 1.190 5.662 4.368 1.911 1.138 2.019 1.388 1.080 1.520 0.811 1.544 0.900 424 chr14 55564545 55576429 + 0 NA Intergenic Intergenic -25448 NM_001177388 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 4.752 0.469 4.966 0.774 8.059 2.403 2.946 1.116 4.034 1.944 0.825 3.734 4.044 1.171 2.083 0.964 1.023 4.568 4.237 0.601 0.709 3.551 872 chr2 114036551 114047951 + 0 NA Intergenic MIRb|SINE|MIR -5753 NM_003466 7849 Hs.469728 NM_003466 ENSG00000125618 PAX8 - paired box 8 protein-coding 0.450 1.173 2.241 0.169 0.473 0.120 4.724 2.305 10.636 0.704 0.197 0.767 0.200 1.568 1.260 0.056 0.063 3.692 3.216 2.908 0.112 9.726 1625 chrX 30319655 30327412 + 0 NA intron (NM_000475, intron 1 of 1) intron (NM_000475, intron 1 of 1) 3962 NM_000475 190 Hs.268490 NM_000475 ENSG00000169297 NR0B1 AHC|AHCH|AHX|DAX-1|DAX1|DSS|GTD|HHG|NROB1|SRXY2 nuclear receptor subfamily 0 group B member 1 protein-coding 3.241 0.133 0.158 0.208 2.905 0.335 0.141 0.082 0.494 0.352 1.177 2.366 0.172 0.101 0.098 0.095 0.017 0.149 0.156 163 chr10 3927457 3935320 + 0 NA Intergenic AluJb|SINE|Alu 55246 NR_134490 105376365 Hs.460114 NR_134490 ENSG00000230573 LOC105376365 - uncharacterized LOC105376365 ncRNA 0.312 0.567 2.212 0.082 0.142 0.736 1.212 2.050 3.368 0.295 0.103 0.358 0.133 0.856 0.410 0.029 0.092 1.776 0.037 1.454 0.087 4.101 1402 chr7 27196781 27202511 + 0 NA Intergenic Intergenic -3350 NM_006896 3204 Hs.610216 NM_006896 ENSG00000122592 HOXA7 ANTP|HOX1|HOX1.1|HOX1A homeobox A7 protein-coding 0.674 0.238 0.657 0.657 2.099 0.237 0.917 0.539 0.867 0.649 0.423 1.923 0.826 0.695 0.434 4.951 3.666 0.260 0.215 0.157 0.514 0.150 1106 chr3 153687692 153700000 + 0 NA Intergenic AluJb|SINE|Alu -144946 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 0.959 0.020 0.137 0.217 1.137 0.056 0.159 0.007 0.073 2.063 2.034 2.744 8.741 0.081 0.119 0.196 0.208 0.022 0.017 0.036 0.113 0.118 1146 chr3 186521906 186559430 + 0 NA intron (NR_125409, intron 3 of 3) AluJb|SINE|Alu 2642 NR_125409 102724699 Hs.518476 NR_125409 ENSG00000232233 LINC02043 - long intergenic non-protein coding RNA 2043 ncRNA 0.570 0.125 0.455 4.268 nan 0.210 0.674 0.198 0.563 1.480 0.449 1.555 4.805 0.372 0.241 2.038 1.816 0.211 0.300 0.241 4.412 0.302 395 chr13 100630800 100637658 + 0 NA 5' UTR (NM_007129, exon 1 of 3) 5' UTR (NM_007129, exon 1 of 3) 203 NM_007129 7546 Hs.653700 NM_007129 ENSG00000043355 ZIC2 HPE5 Zic family member 2 protein-coding 0.225 0.307 0.655 1.814 3.937 0.803 5.170 2.628 11.304 2.261 1.364 4.333 3.316 2.614 0.990 2.105 1.211 0.425 0.111 0.308 0.421 0.122 89 chr1 155021662 155026349 + 0 NA promoter-TSS (NR_040772) promoter-TSS (NR_040772) 257 NR_048578 8751 Hs.312098 NM_003815 ENSG00000143537 ADAM15 MDC15 ADAM metallopeptidase domain 15 protein-coding 3.684 1.400 1.205 0.776 2.456 1.711 2.749 0.641 2.153 2.630 1.077 7.216 6.555 1.912 3.311 1.469 1.378 3.083 2.046 2.540 0.344 2.055 175 chr10 32249168 32253444 + 0 NA Intergenic AluSx1|SINE|Alu -33502 NM_001270698 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 1.165 0.087 0.430 0.300 0.827 0.575 0.989 0.126 0.338 0.194 0.039 0.840 0.331 0.525 0.734 0.056 0.143 0.111 0.431 0.315 0.082 6.421 1531 chr8 145001625 145032601 + 0 NA promoter-TSS (NM_201383) promoter-TSS (NM_201383) -421 NM_201383 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 2.996 1.695 2.966 0.827 14.868 2.542 14.060 1.136 2.437 3.901 1.933 6.919 3.845 1.242 2.275 0.869 0.660 3.284 4.362 2.544 0.412 1.629 584 chr16 89881420 89895916 + 0 NA Intergenic Intergenic -5603 NM_000135 2175 Hs.744083 NM_000135 ENSG00000187741 FANCA FA|FA-H|FA1|FAA|FACA|FAH|FANCH Fanconi anemia complementation group A protein-coding 1.243 0.410 0.877 4.522 2.700 1.069 1.445 0.484 1.367 1.259 0.682 2.571 1.781 0.643 0.619 1.857 1.557 0.332 0.238 0.208 2.671 0.370 988 chr20 52479915 52487227 + 0 NA Intergenic Intergenic 8677 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 6.504 0.132 2.502 2.689 0.933 0.393 2.433 2.048 5.370 1.635 2.063 2.854 5.850 1.338 1.456 1.072 1.185 3.682 1.505 0.261 2.885 4.855 35 chr1 28831213 28846083 + 0 NA intron (NM_001048199, intron 3 of 11) AluSx1|SINE|Alu 3578 NR_004404 26768 NR_004404 SNORA73B 105A|E1c|RNU105A|RNU17B|U17B small nucleolar RNA, H/ACA box 73B snoRNA 2.779 1.332 1.299 3.537 6.348 2.176 2.728 0.721 4.937 4.360 0.839 3.865 5.848 2.144 1.054 1.304 1.339 3.843 1.650 3.205 2.744 2.820 1550 chr9 4292100 4303434 + 0 NA intron (NM_001042413, intron 1 of 10) intron (NM_001042413, intron 1 of 10) 2268 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 1.702 1.716 3.458 0.410 1.131 1.227 0.033 1.435 5.569 0.705 0.362 3.444 1.212 2.403 1.250 0.391 0.244 2.513 1.040 3.746 0.143 1.017 1454 chr7 139363711 139368834 + 0 NA intron (NM_001113239, intron 2 of 14) intron (NM_001113239, intron 2 of 14) 111421 NM_022740 28996 Hs.731417 NM_022740 ENSG00000064393 HIPK2 PRO0593 homeodomain interacting protein kinase 2 protein-coding 4.901 0.701 0.643 0.906 0.370 0.121 7.180 1.796 7.102 1.060 0.032 0.527 0.481 0.865 5.283 0.184 0.210 11.759 2.058 2.108 0.316 1.434 1421 chr7 73151845 73159399 + 0 NA Intergenic AluSp|SINE|Alu -2425 NM_001145364 83451 Hs.647045 NM_148912 ENSG00000106077 ABHD11 PP1226|WBSCR21 abhydrolase domain containing 11 protein-coding 7.429 0.344 1.649 1.635 2.539 0.860 1.596 0.492 1.412 3.139 2.590 8.241 7.041 2.025 1.610 1.085 0.913 0.495 1.450 0.426 1.005 6.016 347 chr12 57076482 57084251 + 0 NA intron (NM_006601, intron 1 of 7) AluSp|SINE|Alu 1415 NR_104219 10728 Hs.50425 NM_006601 ENSG00000110958 PTGES3 P23|TEBP|cPGES prostaglandin E synthase 3 protein-coding 2.731 1.976 4.711 3.644 7.713 3.683 4.277 1.347 8.742 4.853 1.515 6.109 9.385 6.834 2.690 2.176 1.980 3.079 2.523 3.275 2.545 2.546 1333 chr6 42844719 42860181 + 0 NA non-coding (NR_134563, exon 3 of 6) non-coding (NR_134563, exon 3 of 6) 5096 NR_134562 285855 Hs.520133 NM_198486 ENSG00000146223 RPL7L1 dJ475N16.4 ribosomal protein L7 like 1 protein-coding 1.301 0.441 1.370 1.525 2.459 1.283 1.980 0.671 3.754 1.588 0.820 2.301 5.507 1.152 0.977 0.591 0.564 1.026 0.497 0.920 0.697 1.007 665 chr17 46721572 46725991 + 0 NA Intergenic CpG -13860 NR_029582 406972 NR_029582 ENSG00000210741 MIR196A1 MIRN196-1|MIRN196A1|mir-196a-1 microRNA 196a-1 ncRNA 0.366 0.056 1.736 0.339 0.410 3.326 0.042 0.019 0.107 0.231 0.148 9.295 0.226 0.078 0.637 4.547 3.294 1.028 0.009 0.050 0.651 434 chr14 68549887 68577304 + 0 NA intron (NM_001321809, intron 7 of 11) L4|LINE|RTE 273286 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 0.236 0.312 0.228 0.082 0.570 0.071 1.065 0.878 3.080 0.283 0.038 0.222 0.277 0.147 0.312 0.017 0.031 0.855 0.009 0.712 0.047 0.385 1476 chr8 40753532 40762263 + 0 NA Intergenic Intergenic -2554 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 0.122 0.028 0.082 0.416 0.064 0.053 0.085 0.053 0.056 0.096 0.119 0.065 0.036 0.104 0.060 2.356 3.377 0.008 0.005 0.047 0.591 0.097 1184 chr4 91858080 91918121 + 0 NA intron (NM_001145065, intron 9 of 10) L1MB7|LINE|L1 731918 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 0.257 0.024 0.022 0.100 1.854 0.030 0.049 0.010 0.059 0.155 0.152 0.078 0.075 0.086 0.014 0.022 0.003 0.033 0.073 0.033 0.070 865 chr2 101517160 101525674 + 0 NA intron (NM_002518, intron 2 of 20) intron (NM_002518, intron 2 of 20) 72206 NR_110213 101927142 Hs.656556 NR_110213 LOC101927142 - uncharacterized LOC101927142 ncRNA 0.413 0.145 2.185 1.595 0.157 2.030 0.749 0.046 0.178 0.321 0.029 0.368 0.187 0.140 1.198 3.034 3.911 0.486 0.275 0.484 1.618 0.310 1207 chr5 1882063 1888083 + 0 NA intron (NM_001278632, intron 1 of 5) CpG-20520 2025 NM_001278635 50805 Hs.196927 NM_016358 ENSG00000113430 IRX4 IRXA3 iroquois homeobox 4 protein-coding 0.194 0.298 0.231 14.725 0.050 0.401 0.299 1.211 2.577 3.054 4.340 0.185 0.063 1.760 0.414 0.286 0.007 0.077 0.019 0.019 1584 chr9 113013246 113022160 + 0 NA intron (NM_001244938, intron 1 of 3) intron (NM_001244938, intron 1 of 3) 1217 NM_003329 7295 Hs.435136 NM_003329 ENSG00000136810 TXN TRDX|TRX|TRX1 thioredoxin protein-coding 3.305 1.111 2.328 2.529 4.220 2.982 2.335 0.859 3.136 6.761 2.289 3.257 10.486 2.470 0.746 2.226 2.267 2.198 1.937 1.298 1.687 0.783 904 chr2 199555751 199578259 + 0 NA Intergenic Intergenic -327184 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 0.180 0.099 6.095 0.162 0.054 0.087 0.003 0.055 0.112 0.007 0.134 0.128 0.103 0.083 0.091 0.178 0.024 0.006 0.030 5.600 0.059 930 chr2 240360975 240368853 + 0 NA Intergenic L3|LINE|CR1 41472 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 LOC101928111 - uncharacterized LOC101928111 ncRNA 0.236 0.220 0.196 6.640 0.417 0.163 0.047 0.020 0.061 0.356 0.297 0.145 0.468 0.089 0.145 2.099 1.709 0.017 0.005 0.354 4.425 0.121 442 chr14 69280390 69283677 + 0 NA Intergenic Intergenic -19073 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 1.707 1.457 8.720 0.717 5.018 1.282 4.652 2.660 9.375 3.455 0.943 7.120 4.117 2.150 2.055 1.337 0.920 6.101 1.860 2.103 0.550 4.064 1577 chr9 106853542 106858233 + 0 NA promoter-TSS (NM_001042551) promoter-TSS (NM_001042551) -654 NM_001265602 10592 Hs.119023 NM_006444 ENSG00000136824 SMC2 CAP-E|CAPE|SMC-2|SMC2L1 structural maintenance of chromosomes 2 protein-coding 2.583 1.346 3.073 2.741 6.030 2.379 3.143 2.131 12.588 4.794 1.970 3.693 6.849 1.933 1.925 1.483 1.321 4.408 2.282 3.256 1.825 1.085 649 chr17 41518975 41536679 + 0 NA Intergenic AluSq2|SINE|Alu 5653 NR_031751 100313779 NR_031751 ENSG00000267151 MIR2117 - microRNA 2117 ncRNA 0.364 0.070 0.176 0.162 1.184 0.124 0.287 0.058 0.128 0.944 1.790 2.690 3.633 0.098 0.201 0.114 0.235 0.065 0.021 0.044 0.092 0.147 1572 chr9 100568160 100575002 + 0 NA Intergenic Intergenic -43956 NM_004473 2304 Hs.159234 NM_004473 ENSG00000178919 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 forkhead box E1 protein-coding 0.125 0.199 0.117 0.078 0.523 0.043 0.342 0.126 0.285 0.578 3.348 0.176 1.031 0.042 0.061 0.024 0.018 0.540 0.024 0.405 0.068 0.095 689 chr17 62500366 62504632 + 0 NA promoter-TSS (NM_001320597) promoter-TSS (NM_001320597) 140 NM_004396 1655 Hs.279806 NM_004396 ENSG00000108654 DDX5 G17P1|HLR1|HUMP68|p68 DEAD-box helicase 5 protein-coding 4.555 1.887 7.909 5.773 10.892 5.055 5.563 1.420 7.917 6.447 2.172 7.522 10.861 5.430 2.742 2.680 1.613 4.266 2.938 2.598 2.968 2.409 1318 chr6 31679129 31684289 + 0 NA non-coding (NR_024541, exon 1 of 3) non-coding (NR_024541, exon 1 of 3) 133 NR_003673 79136 Hs.247883 NM_024123 LY6G6E C6orf22|G6e lymphocyte antigen 6 complex, locus G6E pseudo 0.139 0.072 0.177 4.082 0.481 0.237 0.234 0.123 0.172 1.015 1.362 0.828 1.397 0.101 0.132 3.768 3.775 0.050 0.024 0.021 4.082 0.062 886 chr2 161242620 161248356 + 0 NA intron (NM_002897, intron 1 of 13) intron (NM_002897, intron 1 of 13) 18905 NR_039946 100616364 NR_039946 ENSG00000153250 MIR4785 mir-4785 microRNA 4785 ncRNA 0.312 1.770 0.079 0.168 1.552 0.066 0.923 0.098 0.291 0.746 0.300 0.748 0.989 1.108 0.187 0.069 0.084 0.936 0.005 4.124 0.021 0.436 648 chr17 41493440 41498111 + 0 NA Intergenic Intergenic 19422 NM_001661 379 Hs.183153 NM_001661 ENSG00000175906 ARL4D ARF4L|ARL6 ADP ribosylation factor like GTPase 4D protein-coding 0.182 0.424 0.389 0.137 2.130 0.477 1.809 0.594 1.805 2.599 4.513 3.795 6.203 0.679 0.454 0.069 0.779 0.045 0.502 0.050 0.101 642 chr17 40669568 40694718 + 0 NA Intergenic AluSz|SINE|Alu -5808 NM_000263 4669 Hs.50727 NM_000263 ENSG00000108784 NAGLU CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD N-acetyl-alpha-glucosaminidase protein-coding 0.858 0.826 1.725 0.523 1.058 1.481 3.336 0.852 3.362 0.931 0.695 2.430 1.111 1.346 0.544 0.375 0.276 3.633 1.467 1.599 0.272 1.526 1116 chr3 168821005 168832636 + 0 NA intron (NM_004991, intron 9 of 16) intron (NM_004991, intron 9 of 16) 37273 NM_001105077 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 0.227 0.085 0.321 0.120 1.240 0.500 2.508 1.455 6.141 0.449 0.435 1.951 1.222 0.188 0.341 0.061 0.105 4.031 4.193 0.469 0.099 6.032 1329 chr6 41038547 41042395 + 0 NA promoter-TSS (NM_021705) promoter-TSS (NM_021705) -118 NM_001329685 221443 Hs.227457 NM_145063 ENSG00000124596 OARD1 C6orf130|TARG1|dJ34B21.3 O-acyl-ADP-ribose deacylase 1 protein-coding 4.814 1.705 7.028 5.109 7.052 4.370 7.017 2.373 11.393 3.936 2.035 7.278 13.379 3.951 3.663 2.320 1.752 5.779 4.224 2.507 4.111 4.979 1028 chr22 29208732 29220412 + 0 NA Intergenic Intergenic -18012 NM_005080 7494 Hs.437638 NM_005080 ENSG00000100219 XBP1 TREB-5|TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding 4.584 0.021 0.446 0.228 0.328 0.065 0.095 0.027 0.084 0.432 0.056 0.203 1.009 0.083 0.382 0.288 0.343 0.017 0.018 0.028 0.295 0.154 1589 chr9 123160892 123176932 + 0 NA intron (NM_001011649, intron 31 of 36) intron (NM_001011649, intron 31 of 36) -161584 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 0.677 0.147 0.156 0.087 0.269 0.283 0.139 0.097 0.199 1.124 1.158 0.356 5.945 0.127 0.286 0.157 0.160 0.127 0.026 0.285 0.043 0.082 198 chr10 112255585 112262023 + 0 NA intron (NM_004419, intron 1 of 3) intron (NM_004419, intron 1 of 3) 1179 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 2.015 1.217 2.314 0.183 3.773 2.763 3.970 0.442 1.031 0.765 0.599 5.486 5.955 3.937 2.252 0.329 0.282 2.391 1.636 2.141 0.053 3.226 1098 chr3 138580154 138583484 + 0 NA Intergenic Intergenic 81043 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 3.311 0.928 6.418 0.546 2.696 0.344 6.846 0.565 2.270 0.977 0.525 4.508 1.041 0.921 1.981 0.187 0.106 2.097 2.472 1.507 0.209 7.753 1059 chr3 12328096 12342823 + 0 NA intron (NM_138711, intron 1 of 7) intron (NM_138711, intron 1 of 7) 5023 NM_138711 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 0.455 0.244 1.944 0.131 1.450 0.098 1.595 0.064 0.135 0.313 0.049 1.598 0.482 0.884 0.643 0.096 0.138 1.465 0.388 0.301 0.047 3.224 727 chr18 52762889 52769624 + 0 NA Intergenic L2b|LINE|L2 25281 NR_110743 101927229 Hs.638474 NR_110743 ENSG00000267013 LINC01929 - long intergenic non-protein coding RNA 1929 ncRNA 1.758 0.313 0.748 0.226 0.072 2.838 0.055 0.238 0.237 0.108 0.550 0.019 0.323 0.227 0.369 0.674 0.776 0.392 0.331 0.187 0.562 939 chr20 20180535 20207145 + 0 NA intron (NM_015585, intron 17 of 26) intron (NM_015585, intron 17 of 26) -154925 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 0.145 0.014 0.055 2.158 0.198 0.032 0.098 0.018 0.068 0.345 0.162 0.226 0.478 0.069 0.066 0.660 1.020 0.018 0.014 0.038 2.170 0.052 320 chr12 12984463 12995931 + 0 NA Intergenic Intergenic 23917 NM_201224 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 3.255 1.469 0.425 0.205 3.176 0.805 2.688 0.584 2.072 2.048 0.675 3.164 0.422 0.952 1.826 0.073 0.075 5.201 4.905 3.759 0.040 6.690 913 chr2 208367522 208381543 + 0 NA Intergenic AluSx1|SINE|Alu -20084 NM_134442 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 0.165 0.177 0.331 0.282 0.175 0.184 1.809 1.170 5.507 0.385 0.209 1.622 0.319 0.298 0.467 0.061 0.085 2.321 1.690 0.642 0.612 2.346 811 chr19 49117252 49128352 + 0 NA promoter-TSS (NM_000979) promoter-TSS (NM_000979) 12 NM_001204159 56848 Hs.528006 NM_020126 ENSG00000063176 SPHK2 SK 2|SK-2|SPK 2|SPK-2 sphingosine kinase 2 protein-coding 3.709 0.551 0.753 1.843 2.452 1.258 0.846 0.407 1.528 2.209 0.679 2.820 4.293 1.784 0.788 0.885 0.859 0.825 0.583 0.641 1.014 0.956 202 chr10 115368206 115390752 + 0 NA intron (NM_198060, intron 25 of 41) intron (NM_198060, intron 25 of 41) 44350 NM_001322945 4892 Hs.268788 NM_006175 ENSG00000197893 NRAP N-RAP nebulin related anchoring protein protein-coding 0.179 0.011 0.118 5.269 0.170 0.060 0.082 0.014 0.024 0.156 0.018 0.211 0.147 0.062 0.149 0.357 0.631 0.015 0.007 0.021 2.256 0.066 249 chr11 62366018 62371203 + 0 NA 5' UTR (NM_001330292, exon 1 of 18) 5' UTR (NM_001330292, exon 1 of 18) 154 NM_001330292 9219 Hs.173043 NM_004739 ENSG00000149480 MTA2 MTA1L1|PID metastasis associated 1 family member 2 protein-coding 4.421 1.218 2.441 4.082 10.245 3.401 3.451 1.484 5.021 3.839 1.269 11.795 5.313 3.928 2.964 3.658 2.217 2.356 1.531 2.215 2.627 1.511 361 chr12 95508825 95515217 + 0 NA intron (NM_018351, intron 8 of 20) AluSx1|SINE|Alu -44617 NM_001032287 7181 Hs.108301 NM_003297 ENSG00000120798 NR2C1 TR2 nuclear receptor subfamily 2 group C member 1 protein-coding 0.454 1.240 0.642 0.284 0.521 0.142 2.632 0.098 0.247 0.713 0.176 0.989 0.413 0.546 0.947 0.097 0.053 3.166 2.230 3.638 0.054 4.178 465 chr15 41054997 41064890 + 0 NA TTS (NM_018163) TTS (NM_018163) -2216 NM_001130448 643338 Hs.631715 NM_001130448 ENSG00000188277 C15orf62 - chromosome 15 open reading frame 62 protein-coding 1.692 0.288 5.607 0.486 1.467 0.964 0.614 0.135 0.183 0.517 0.341 3.094 0.850 1.419 1.283 0.549 0.303 1.398 0.505 0.539 0.185 0.641 1612 chr9 137326129 137355230 + 0 NA Intergenic Intergenic 42251 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 0.149 0.140 0.616 0.092 0.414 0.110 0.534 1.350 2.816 0.496 0.098 0.329 0.383 0.440 0.164 0.043 0.025 0.499 0.013 0.147 0.028 0.039 184 chr10 65223876 65226643 + 0 NA exon (NM_001322252, exon 1 of 25) exon (NM_001322252, exon 1 of 25) 270 NR_027182 84989 Hs.659950 NM_032903 ENSG00000272767 JMJD1C-AS1 - JMJD1C antisense RNA 1 ncRNA 2.118 3.443 2.265 3.584 6.306 3.568 3.961 1.011 4.354 1.119 1.377 7.418 4.322 6.971 1.691 1.189 0.652 1.200 1.278 5.301 2.127 2.859 819 chr19 53438106 53450543 + 0 NA intron (NM_001202473, intron 3 of 3) AluJb|SINE|Alu 1523 NR_037805 399669 Hs.745445 NM_203307 ENSG00000213801 ZNF321P ZNF321 zinc finger protein 321, pseudogene pseudo 0.241 0.100 4.415 0.310 0.667 0.208 0.641 0.330 1.529 0.426 0.109 0.522 0.582 1.042 0.285 0.031 0.068 0.202 0.041 0.125 0.071 0.997 1189 chr4 129204433 129211729 + 0 NA intron (NM_006320, intron 1 of 2) intron (NM_006320, intron 1 of 2) 1903 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 2.640 0.747 2.490 1.510 4.024 1.009 2.203 1.484 10.020 1.568 0.567 2.633 2.568 2.041 0.769 1.164 0.949 1.925 0.669 1.484 0.806 1.185 1177 chr4 77701345 77705601 + 0 NA 3' UTR (NM_020859, exon 11 of 11) 3' UTR (NM_020859, exon 11 of 11) 115529 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 0.604 0.407 0.276 0.146 0.545 0.127 1.171 0.272 0.884 0.623 0.301 1.315 1.298 0.209 1.977 0.058 0.028 1.991 0.503 0.696 0.081 5.777 1537 chr8 145513442 145517484 + 0 NA promoter-TSS (NM_015201) promoter-TSS (NM_015201) 212 NM_005526 3297 Hs.530227 NM_005526 ENSG00000185122 HSF1 HSTF1 heat shock transcription factor 1 protein-coding 1.597 0.735 1.541 3.871 10.940 1.835 13.248 1.671 5.931 6.643 1.212 5.832 5.804 1.387 1.510 2.370 1.942 0.899 1.777 0.889 1.195 1.008 1127 chr3 177159904 177175789 + 0 NA intron (NR_047568, intron 1 of 3) MIR|SINE|MIR 8137 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 0.348 0.078 0.315 1.081 2.749 0.105 0.723 0.784 1.422 5.872 2.268 3.752 9.215 0.208 0.164 0.790 1.150 0.284 0.111 0.214 3.868 1.364 776 chr19 38864400 38866705 + 0 NA exon (NM_002812, exon 1 of 7) exon (NM_002812, exon 1 of 7) 362 NM_002812 5714 Hs.78466 NM_002812 ENSG00000099341 PSMD8 HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31 proteasome 26S subunit, non-ATPase 8 protein-coding 3.732 1.235 12.663 3.950 4.189 2.586 6.395 1.275 4.774 8.051 2.915 4.495 8.284 3.072 2.167 1.671 0.794 1.600 1.364 1.838 2.379 0.927 894 chr2 174826409 174833114 + 0 NA promoter-TSS (NM_001017371) promoter-TSS (NM_001017371) 669 NM_001172712 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 5.670 1.784 5.390 4.331 9.631 3.165 8.753 1.196 6.510 8.587 1.131 7.466 10.113 3.310 3.892 3.653 2.308 4.024 1.984 3.575 3.553 4.674 1298 chr6 16465455 16499103 + 0 NA intron (NM_001128164, intron 6 of 7) intron (NM_001128164, intron 6 of 7) 243468 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 0.219 0.033 0.139 1.700 0.193 0.079 0.161 0.014 0.112 0.206 0.196 0.089 0.528 0.061 0.076 0.153 0.259 0.033 0.010 0.076 3.134 0.118 858 chr2 86930034 86933472 + 0 NA intron (NM_001198954, intron 1 of 7) MLT1F2|LTR|ERVL-MaLR -15661 NM_022780 64795 Hs.75277 NM_022780 ENSG00000153561 RMND5A CTLH|GID2|GID2A|RMD5|p44CTLH required for meiotic nuclear division 5 homolog A protein-coding 0.434 0.072 7.814 0.112 1.127 0.110 1.990 0.227 0.544 0.811 0.115 1.473 0.301 1.486 0.783 0.067 0.561 1.556 0.392 0.070 0.414 1459 chr7 148929684 148938012 + 0 NA Intergenic Intergenic -2894 NM_012256 7988 Hs.490510 NM_012256 ENSG00000170260 ZNF212 C2H2-150|ZNF182|ZNFC150 zinc finger protein 212 protein-coding 1.347 0.937 0.733 0.514 1.642 0.403 2.137 0.737 3.475 2.081 0.698 1.392 1.672 5.127 1.308 0.199 0.218 3.470 2.398 2.823 0.123 2.920 140 chr1 234633960 234660477 + 0 NA Intergenic AluSq|SINE|Alu 20307 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 0.383 0.135 0.330 1.226 1.396 0.150 0.486 0.603 1.288 1.799 0.605 1.192 3.335 0.398 0.306 0.173 0.221 0.447 0.172 0.385 0.675 0.303 1570 chr9 95496638 95553465 + 0 NA intron (NM_015250, intron 1 of 7) intron (NM_015250, intron 1 of 7) 2032 NM_015250 23299 Hs.436939 NM_015250 ENSG00000185963 BICD2 SMALED2|bA526D8.1 BICD cargo adaptor 2 protein-coding 0.288 0.118 0.244 0.286 1.248 0.176 0.258 0.105 0.306 1.398 1.091 0.989 4.007 0.262 0.130 0.232 0.169 0.172 0.075 0.137 0.154 0.100 1269 chr5 172165707 172169224 + 0 NA Intergenic L1MB8|LINE|L1 -15041 NM_001287812 101928093 Hs.646902 NM_001287812 LOC101928093 - uncharacterized LOC101928093 protein-coding 0.214 2.745 0.269 0.061 0.479 0.086 1.082 1.102 4.589 0.369 0.089 0.085 0.191 0.693 0.116 0.023 0.764 0.013 5.633 0.093 0.324 181 chr10 63657749 63665233 + 0 NA intron (NM_032199, intron 1 of 9) intron (NM_032199, intron 1 of 9) 478 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 3.185 0.572 3.280 4.444 6.694 2.700 3.795 0.776 4.254 1.679 1.388 5.755 5.931 2.020 2.783 1.058 1.358 1.948 4.351 1.055 2.845 2.495 412 chr14 37115749 37145338 + 0 NA intron (NM_006194, intron 1 of 4) intron (NM_006194, intron 1 of 4) 3770 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 10.760 0.008 0.417 0.069 11.399 0.077 0.346 0.076 0.265 0.528 0.160 5.252 0.756 0.054 0.426 0.182 0.186 0.085 0.085 0.045 0.019 0.057 954 chr20 34248176 34253903 + 0 NA intron (NM_001198838, intron 1 of 2) intron (NM_001198838, intron 1 of 2) 1820 NR_037188 8904 Hs.246413 NM_003915 ENSG00000214078 CPNE1 COPN1|CPN1 copine 1 protein-coding 2.678 0.951 2.848 6.813 5.891 2.096 3.672 1.006 5.755 3.541 1.559 7.148 6.930 5.977 1.820 0.980 0.785 2.977 1.709 1.672 3.534 1.380 385 chr13 45812254 45817355 + 0 NA intron (NM_004128, intron 5 of 7) AluSq2|SINE|Alu -39629 NM_198404 386618 Hs.23406 NM_198404 ENSG00000180332 KCTD4 bA321C24.3 potassium channel tetramerization domain containing 4 protein-coding 0.416 2.186 0.065 0.063 3.839 0.030 1.640 0.856 3.818 1.022 0.822 2.760 2.314 0.280 0.074 0.055 0.047 0.404 0.156 4.509 0.139 0.221 1479 chr8 42154439 42159499 + 0 NA intron (NR_033818, intron 5 of 21) intron (NR_033818, intron 5 of 21) 28149 NR_033818 3551 Hs.597664 NM_001556 ENSG00000104365 IKBKB IKK-beta|IKK2|IKKB|IMD15|NFKBIKB inhibitor of nuclear factor kappa B kinase subunit beta protein-coding 0.847 1.058 6.518 0.190 0.622 0.031 3.881 0.080 0.109 0.449 0.144 0.521 0.364 0.232 1.305 0.047 0.024 3.926 0.033 2.396 0.045 0.374 1359 chr6 106545002 106551877 + 0 NA intron (NM_001198, intron 4 of 6) intron (NM_001198, intron 4 of 6) 1702 NM_182907 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 1.673 0.018 0.152 0.186 0.651 3.216 1.238 0.138 0.578 0.203 0.232 1.628 1.286 0.372 0.860 0.604 0.824 0.557 0.413 0.048 0.435 0.942 307 chr12 6640349 6650833 + 0 NA intron (NM_001256799, intron 1 of 7) intron (NM_001256799, intron 1 of 7) 1206 NM_001256799 2597 Hs.544577 NM_002046 ENSG00000111640 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 6.026 1.547 2.755 4.224 3.833 3.228 6.222 0.577 3.342 4.518 2.433 8.791 7.443 2.117 2.802 2.532 1.791 5.257 4.989 2.833 3.221 1.541 801 chr19 45594037 45605196 + 0 NA intron (NM_019121, intron 1 of 12) MIRb|SINE|MIR 3185 NM_019121 284352 Hs.285363 NM_019121 ENSG00000104866 PPP1R37 LRRC68 protein phosphatase 1 regulatory subunit 37 protein-coding 3.470 1.099 1.366 1.141 1.897 3.357 2.270 0.441 1.866 1.857 0.564 4.692 3.146 2.092 1.631 0.481 0.467 0.735 1.141 1.385 0.539 0.643 985 chr20 52350832 52358938 + 0 NA Intergenic Intergenic 129992 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 8.433 0.107 1.031 1.276 0.538 0.756 6.127 2.464 5.461 4.419 3.234 9.447 2.724 5.115 3.410 1.171 1.658 5.473 0.021 0.410 1.689 6.391 1467 chr8 21958565 21967762 + 0 NA Intergenic Intergenic 3769 NM_024815 79873 Hs.527101 NM_024815 ENSG00000275074 NUDT18 MTH3 nudix hydrolase 18 protein-coding 0.542 0.202 0.442 0.348 2.734 0.148 0.413 0.277 0.836 1.382 0.420 5.153 2.016 0.696 0.430 0.341 0.182 0.177 0.201 0.363 0.230 0.215 1463 chr7 157128433 157133087 + 0 NA intron (NM_058246, intron 1 of 9) intron (NM_058246, intron 1 of 9) 1049 NM_058246 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 4.018 2.102 3.242 1.281 7.416 3.309 3.787 0.912 6.102 3.876 1.026 3.262 4.162 13.348 1.851 1.157 0.873 1.592 3.738 3.686 0.641 2.340 971 chr20 48803476 48812436 + 0 NA exon (NM_001285878, exon 1 of 1) exon (NM_001285878, exon 1 of 1) 650 NR_125739 101927559 Hs.442486 NR_125739 ENSG00000277449 CEBPB-AS1 - CEBPB antisense RNA 1 ncRNA 2.557 1.803 1.850 3.306 6.622 0.773 3.856 1.375 3.841 2.590 1.689 5.923 8.787 4.238 1.235 1.261 0.756 2.104 1.588 2.668 0.778 0.885 830 chr2 1817924 1823454 + 0 NA intron (NM_001329845, intron 21 of 24) intron (NM_001329845, intron 21 of 24) -72370 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 0.071 0.090 0.151 0.213 0.116 0.014 0.108 2.214 6.039 0.237 0.030 0.167 0.323 0.164 0.206 0.029 0.065 0.208 0.046 0.080 0.063 0.068 154 chr10 1992379 2021086 + 0 NA Intergenic Intergenic 49810 NR_040253 282980 Hs.576810 NR_040253 ENSG00000234962 LINC00700 - long intergenic non-protein coding RNA 700 ncRNA 0.132 0.009 0.121 0.063 2.670 0.069 0.032 0.011 0.060 0.264 0.008 0.257 0.077 0.041 0.051 0.014 0.013 0.004 0.027 0.020 0.082 754 chr19 15487956 15491667 + 0 NA intron (NM_005858, intron 1 of 13) intron (NM_005858, intron 1 of 13) 801 NM_005858 10270 Hs.594496 NM_005858 ENSG00000105127 AKAP8 AKAP 95|AKAP-8|AKAP-95|AKAP95 A-kinase anchoring protein 8 protein-coding 2.960 2.012 7.611 5.694 8.856 2.056 7.385 1.362 6.856 7.039 3.115 8.444 11.256 4.153 2.474 2.316 1.260 3.582 2.734 1.828 2.673 1.598 847 chr2 60726145 60747982 + 0 NA intron (NM_138559, intron 2 of 4) L2a|LINE|L2 43570 NM_018014 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 B-cell CLL/lymphoma 11A protein-coding 0.203 0.028 0.156 0.108 0.507 0.045 0.055 0.307 0.784 0.700 1.046 0.509 3.893 0.060 0.130 0.134 0.190 0.127 0.006 0.041 0.085 0.048 479 chr15 67187300 67196952 + 0 NA Intergenic L2a|LINE|L2 56727 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LOC102723481 - uncharacterized LOC102723481 ncRNA 0.193 0.359 0.236 0.133 0.279 0.133 0.426 1.585 4.166 0.220 0.072 0.243 0.186 0.124 0.054 0.097 0.072 1.720 0.203 0.874 0.061 0.126 1166 chr4 15450967 15460004 + 0 NA Intergenic Intergenic -16004 NM_001164720 57545 Hs.590928 NM_020785 ENSG00000048342 CC2D2A JBTS9|MKS6 coiled-coil and C2 domain containing 2A protein-coding 0.203 0.301 0.086 0.068 0.133 0.084 0.298 2.674 9.147 0.217 0.100 0.187 0.089 0.090 0.427 0.079 0.093 2.566 0.010 0.828 0.051 0.083 1101 chr3 141669258 141682109 + 0 NA intron (NM_001178139, intron 11 of 12) AluJo|SINE|Alu 43546 NM_001178140 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 0.222 0.183 0.302 0.366 1.495 0.089 1.132 0.108 0.229 0.905 0.886 2.319 9.196 0.212 0.187 0.130 0.392 0.501 0.095 0.501 0.302 0.301 704 chr17 75102511 75150772 + 0 NA intron (NM_001204408, intron 3 of 19) AluSz6|SINE|Alu -10364 NM_001039573 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 0.732 0.872 1.124 0.423 0.735 0.341 2.034 0.880 3.129 0.967 0.657 1.110 5.048 1.359 0.686 0.330 0.336 2.317 1.186 1.951 0.198 1.193 1563 chr9 69144948 69156313 + 0 NA Intergenic Intergenic -2776 NR_002836 595135 Hs.571593 NR_002836 ENSG00000277778 PGM5P2 - phosphoglucomutase 5 pseudogene 2 pseudo 0.606 0.458 1.236 0.086 0.434 0.034 0.472 0.517 2.845 0.139 0.091 0.665 0.124 0.926 1.242 0.187 0.212 1.889 0.011 0.655 0.010 3.219 326 chr12 24635710 24655184 + 0 NA intron (NM_001261414, intron 1 of 16) intron (NM_001261414, intron 1 of 16) 70077 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box 5 protein-coding 0.362 0.038 0.591 0.049 1.149 0.024 0.371 0.019 0.064 0.335 0.245 0.150 5.110 0.054 0.680 0.036 0.049 0.646 0.004 0.086 0.024 0.049 1462 chr7 157101062 157104308 + 0 NA Intergenic Intergenic -27025 NM_005494 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 0.809 4.042 0.900 0.593 0.636 2.807 4.521 1.993 7.930 1.389 1.164 0.903 0.642 2.885 0.905 0.096 0.151 13.166 10.237 8.984 0.461 2.441 1378 chr7 1569760 1579010 + 0 NA intron (NM_002360, intron 1 of 2) intron (NM_002360, intron 1 of 2) 4017 NM_002360 7975 Hs.520612 NM_002360 ENSG00000198517 MAFK NFE2U|P18 MAF bZIP transcription factor K protein-coding 2.575 2.875 5.336 0.324 2.151 1.620 5.424 0.915 1.884 1.612 0.680 4.821 2.607 5.711 1.827 0.568 0.560 4.326 2.279 3.970 0.135 1.628 1165 chr4 10094560 10099506 + 0 NA intron (NM_005112, intron 2 of 11) intron (NM_005112, intron 2 of 11) -16717 NR_036090 100423011 NR_036090 ENSG00000264931 MIR3138 mir-3138 microRNA 3138 ncRNA 0.125 2.177 0.553 0.269 0.853 0.123 5.912 0.723 3.803 0.612 0.064 0.611 0.310 0.943 2.291 0.031 0.074 9.467 1.840 4.123 0.046 1.345 1003 chr21 35014797 35019376 + 0 NA intron (NM_001001132, intron 1 of 29) intron (NM_001001132, intron 1 of 29) 2302 NM_003024 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 0.953 2.784 1.438 1.808 3.154 1.169 2.792 0.900 4.953 1.191 0.534 2.386 1.591 1.889 0.526 1.676 0.956 0.806 0.515 4.956 0.789 0.703 1054 chr3 8923090 8931843 + 0 NA intron (NM_020165, intron 12 of 12) MER49|LTR|ERV1 77693 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18, E3 ubiquitin protein ligase protein-coding 0.182 2.150 0.099 0.257 0.248 0.052 0.085 0.808 2.639 0.183 0.029 0.112 0.126 0.499 0.107 0.009 0.013 1.937 0.010 7.087 0.105 2.320 681 chr17 58466718 58471216 + 0 NA intron (NM_032582, intron 1 of 33) intron (NM_032582, intron 1 of 33) 619 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 2.810 2.202 8.134 3.066 5.538 1.910 5.728 1.525 8.993 3.473 2.222 5.819 8.850 4.944 3.076 1.378 1.382 4.738 2.572 4.363 1.362 1.913 619 chr17 34899326 34903288 + 0 NA intron (NM_024835, intron 1 of 13) CpG 570 NM_024835 79893 Hs.514116 NM_024835 ENSG00000278311 GGNBP2 DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403 gametogenetin binding protein 2 protein-coding 5.066 1.907 6.220 9.025 11.388 4.294 5.747 0.886 6.268 7.423 3.039 10.299 8.989 5.623 2.571 2.614 1.770 5.201 3.242 3.597 5.576 5.208 335 chr12 49758690 49762875 + 0 NA promoter-TSS (NM_023071) promoter-TSS (NM_023071) 94 NM_001293285 65244 Hs.654826 NM_023071 ENSG00000123352 SPATS2 Nbla00526|P59SCR|SCR59|SPATA10 spermatogenesis associated serine rich 2 protein-coding 2.038 2.730 2.867 3.213 14.707 3.599 2.228 0.869 3.789 4.780 1.890 7.742 9.496 2.584 1.678 2.825 2.504 4.200 1.929 6.083 2.447 1.421 1029 chr22 29412140 29437753 + 0 NA intron (NR_046851, intron 2 of 2) intron (NR_046851, intron 2 of 2) 2518 NR_046851 100874123 Hs.674708 NR_046851 ENSG00000177993 ZNRF3-AS1 - ZNRF3 antisense RNA 1 ncRNA 0.341 0.134 0.652 2.115 0.268 0.561 1.384 0.189 0.561 0.305 0.075 0.159 0.225 0.713 0.602 1.005 1.041 0.672 0.397 0.317 2.432 0.482 698 chr17 73078331 73094344 + 0 NA intron (NM_004695, intron 2 of 6) AluSx|SINE|Alu 2301 NM_004695 9121 Hs.592095 NM_004695 ENSG00000170190 SLC16A5 MCT5|MCT6 solute carrier family 16 member 5 protein-coding 2.399 0.543 2.978 0.214 5.360 1.176 1.233 0.581 1.070 0.670 0.897 5.145 12.273 1.636 0.806 0.342 0.366 1.500 0.528 1.133 0.115 2.816 5 chr1 3614132 3635358 + 0 NA intron (NM_001126242, intron 2 of 10) intron (NM_001126242, intron 2 of 10) 10135 NM_001204192 7161 Hs.192132 NM_005427 ENSG00000078900 TP73 P73 tumor protein p73 protein-coding 0.110 0.029 0.073 0.116 4.816 0.042 0.061 0.018 0.045 1.196 0.978 1.708 0.626 0.063 0.064 0.025 0.017 0.016 0.012 0.037 0.022 0.054 621 chr17 35275680 35282450 + 0 NA intron (NR_135670, intron 1 of 1) intron (NR_135670, intron 1 of 1) 14895 NR_135669 102723471 Hs.567930 NR_135668 ENSG00000277268 LOC102723471 - uncharacterized LOC102723471 ncRNA 0.331 2.263 0.161 0.640 1.748 0.434 5.977 0.339 0.449 2.040 0.225 5.315 0.691 1.370 1.230 0.060 0.107 1.772 5.752 4.667 0.847 10.505 524 chr16 2082047 2099106 + 0 NA intron (NM_001318193, intron 3 of 4) intron (NM_001318193, intron 3 of 4) 7294 NM_001318193 4913 Hs.66196 NM_002528 ENSG00000065057 NTHL1 FAP3|NTH1|OCTS3|hNTH1 nth like DNA glycosylase 1 protein-coding 4.216 0.377 5.306 0.609 0.984 0.595 5.311 0.275 0.702 0.469 0.118 1.896 0.711 1.200 2.128 0.330 0.231 4.859 0.824 0.426 0.373 1.177 554 chr16 54961269 54972627 + 0 NA intron (NM_001252197, intron 2 of 2) CpG-9286 1837 NM_005853 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 4.009 0.196 1.773 2.216 4.406 0.288 2.548 0.673 3.463 1.689 0.632 1.415 4.458 0.566 2.950 0.975 0.585 2.229 0.581 0.236 0.771 1.665 552 chr16 52576603 52587682 + 0 NA promoter-TSS (NM_001146188) promoter-TSS (NM_001146188) -428 NM_001146188 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 1.965 0.011 1.555 5.801 0.190 0.068 0.050 0.021 0.043 0.157 0.015 0.163 0.205 0.113 0.236 0.670 0.743 0.010 0.034 0.040 3.808 0.155 598 chr17 7786942 7793263 + 0 NA intron (NM_001005271, intron 1 of 39) intron (NM_001005271, intron 1 of 39) -1396 NM_001330111 84316 Hs.565094 NM_032356 ENSG00000183011 NAA38 LSMD1|PFAAP2 N(alpha)-acetyltransferase 38, NatC auxiliary subunit protein-coding 5.927 1.567 4.362 1.071 10.586 3.226 3.220 2.353 9.275 4.845 2.582 8.058 5.229 4.319 5.409 3.600 2.478 1.196 2.754 2.177 0.811 1.930 780 chr19 39320341 39360772 + 0 NA promoter-TSS (NM_001533) promoter-TSS (NM_001533) 61 NM_001533 3191 Hs.644906 NM_001533 ENSG00000104824 HNRNPL HNRPL|P/OKcl.14|hnRNP-L heterogeneous nuclear ribonucleoprotein L protein-coding 3.280 0.309 5.279 1.209 1.762 0.772 2.566 0.391 1.465 1.585 0.810 2.161 4.074 1.220 1.557 0.430 0.416 0.629 0.966 0.522 0.630 1.886 1623 chrX 21915345 21935257 + 0 NA Intergenic Intergenic -33390 NM_004595 6611 Hs.724874 NM_004595 ENSG00000102172 SMS MRSR|SPMSY|SRS|SpS spermine synthase protein-coding 0.176 0.019 0.087 5.411 0.116 0.064 0.054 0.020 0.017 0.223 0.032 0.079 0.457 0.066 0.047 0.434 0.675 0.048 0.013 0.022 6.532 0.009 1433 chr7 76633845 76640890 + 0 NA intron (NR_023383, intron 6 of 10) AluSx1|SINE|Alu 27228 NR_023383 441263 Hs.675888 NR_023383 ENSG00000265479 DTX2P1-UPK3BP1-PMS2P11 PMS2L11 DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene pseudo 1.636 0.826 1.223 3.059 3.400 0.569 4.152 1.012 2.501 1.105 2.802 6.652 9.671 0.765 1.013 1.402 1.883 2.848 6.608 1.464 3.341 1.925 74 chr1 145448234 145457841 + 0 NA intron (NM_001039703, intron 68 of 85) MIR3|SINE|MIR 13690 NM_001313972 10628 Hs.533977 NM_006472 ENSG00000265972 TXNIP ARRDC6|EST01027|HHCPA78|THIF|VDUP1 thioredoxin interacting protein protein-coding 1.645 0.464 0.535 1.127 1.572 0.381 2.961 2.549 6.528 1.145 0.344 2.672 1.275 0.418 1.904 0.751 0.996 3.229 1.045 1.016 1.907 2.224 240 chr11 46310761 46337712 + 0 NA intron (NM_052854, intron 2 of 11) MIRc|SINE|MIR 25047 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS cAMP responsive element binding protein 3 like 1 protein-coding 0.339 0.469 0.206 0.175 0.579 0.155 1.983 2.202 6.592 0.430 0.090 0.310 0.399 0.647 0.361 0.072 0.063 3.759 0.027 0.656 0.051 0.516 890 chr2 171564243 171576274 + 0 NA non-coding (NR_027433, exon 1 of 1) non-coding (NR_027433, exon 1 of 1) 819 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 0.178 0.144 0.150 6.080 0.344 0.348 0.955 0.172 0.585 0.209 0.080 0.211 0.224 0.837 0.295 2.689 1.952 0.473 0.105 0.092 6.272 0.198 440 chr14 69141254 69170449 + 0 NA Intergenic Intergenic -60347 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 0.186 0.729 0.266 0.081 1.528 0.166 1.750 1.777 4.715 0.711 0.732 2.059 2.041 0.435 0.526 0.048 0.046 4.982 2.605 1.631 0.087 1.992 230 chr11 34639354 34669825 + 0 NA intron (NM_001206616, intron 1 of 8) intron (NM_001206616, intron 1 of 8) 578 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 2.879 0.053 1.149 0.208 0.252 3.155 1.031 0.338 0.294 0.588 6.296 3.089 1.075 0.066 0.242 0.061 0.088 0.518 0.588 0.095 0.083 1.080 1289 chr6 2788368 2792507 + 0 NA Intergenic Intergenic -19873 NM_001347872 340156 Hs.127830 NM_001012418 ENSG00000145949 MYLK4 SgK085 myosin light chain kinase family member 4 protein-coding 0.435 0.120 0.272 0.123 0.173 0.165 1.261 0.114 0.354 0.246 0.020 0.229 0.044 1.711 0.358 0.038 0.030 0.675 0.187 0.243 0.083 6.127 115 chr1 183436118 183446570 + 0 NA promoter-TSS (NR_040063) promoter-TSS (NR_040063) -162 NM_001331007 9887 Hs.591463 NM_014837 ENSG00000116698 SMG7 C1orf16|EST1C|SGA56M SMG7, nonsense mediated mRNA decay factor protein-coding 3.278 0.675 0.999 2.189 3.118 0.747 2.074 0.528 2.372 3.278 1.131 4.426 4.399 1.636 2.918 1.941 2.094 2.309 0.975 0.885 2.213 1.199 299 chr11 129715298 129733481 + 0 NA intron (NM_138788, intron 2 of 5) intron (NM_138788, intron 2 of 5) 38515 NM_006165 4798 Hs.530539 NM_006165 ENSG00000170322 NFRKB INO80G nuclear factor related to kappaB binding protein protein-coding 5.484 0.347 1.153 0.538 1.033 0.453 0.559 0.263 0.909 0.657 0.601 1.670 0.409 0.230 1.083 0.238 0.347 1.694 1.803 0.573 0.406 1.159 377 chr12 124983045 125014007 + 0 NA intron (NM_001077261, intron 2 of 47) intron (NM_001077261, intron 2 of 47) 53484 NM_006312 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 1.138 0.535 1.107 0.370 3.550 0.182 1.432 0.153 0.531 0.765 0.396 2.384 0.894 0.477 0.861 0.171 0.145 0.285 0.567 0.846 0.121 0.348 1282 chr5 177365033 177379571 + 0 NA Intergenic Intergenic 50941 NM_006261 5626 Hs.158301 NM_006261 ENSG00000175325 PROP1 CPHD2|PROP-1 PROP paired-like homeobox 1 protein-coding 0.249 0.043 0.348 4.040 0.624 0.131 0.198 0.042 0.072 0.295 0.171 0.297 0.914 0.124 0.394 5.286 4.445 0.047 0.032 0.038 3.452 0.078 922 chr2 234388375 234402754 + 0 NA intron (NM_018218, intron 27 of 30) intron (NM_018218, intron 27 of 30) 78672 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 4.201 0.904 1.541 0.268 1.203 0.074 3.670 0.863 0.902 1.232 0.608 3.910 6.245 1.362 2.055 0.270 0.474 1.961 0.052 2.673 0.128 1.207 602 chr17 16911882 16924152 + 0 NA Intergenic Arthur1|DNA|hAT-Tip100 -28057 NM_201274 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 2.505 0.838 0.461 0.096 1.766 0.700 0.765 1.106 1.288 0.563 0.294 3.955 0.305 0.737 1.254 0.057 0.129 3.027 2.789 1.507 0.019 2.115 841 chr2 43307873 43315734 + 0 NA Intergenic MLT1E2|LTR|ERVL-MaLR -45121 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 0.170 0.882 0.318 0.203 2.046 0.242 1.950 1.077 2.394 2.690 2.625 2.838 1.019 0.615 0.611 0.084 0.076 3.632 0.057 1.640 0.088 0.901 1311 chr6 28317105 28323077 + 0 NA intron (NM_001242894, intron 2 of 6) MER5B|DNA|hAT-Charlie 1881 NM_145909 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 1.274 0.432 0.875 2.880 6.641 4.641 3.100 0.693 3.825 2.320 0.545 1.364 9.590 2.309 1.098 1.061 1.742 1.040 0.280 1.118 1.924 2.906 1044 chr22 45992736 46009573 + 0 NA intron (NR_131244, intron 1 of 1) AluSx|SINE|Alu 373 NR_131244 100506737 Hs.517692 NR_131244 ENSG00000238120 LINC01589 TCONS_00029353 long intergenic non-protein coding RNA 1589 ncRNA 1.007 0.096 2.182 0.102 0.563 0.304 0.989 0.772 1.418 0.523 0.535 3.868 1.214 0.988 0.198 0.014 0.043 3.825 0.372 0.251 0.034 0.465 1072 chr3 49936687 49944666 + 0 NA non-coding (NR_134919, exon 1 of 20) non-coding (NR_134919, exon 1 of 20) 394 NM_001244937 4486 Hs.517973 NM_002447 ENSG00000164078 MST1R CD136|CDw136|NPCA3|PTK8|RON macrophage stimulating 1 receptor protein-coding 3.003 1.917 2.352 0.214 5.446 0.802 2.743 0.341 0.448 0.688 0.473 7.563 0.800 2.673 1.969 0.277 0.243 2.082 4.110 3.849 0.101 4.367 1394 chr7 20253597 20261722 + 0 NA promoter-TSS (NM_182762) promoter-TSS (NM_182762) 459 NR_134569 100506098 Hs.59203 NR_134567 ENSG00000233834 LOC100506098 - uncharacterized LOC100506098 ncRNA 4.102 0.076 1.604 0.750 0.931 0.064 0.481 0.048 0.144 0.844 0.473 2.266 0.269 0.205 1.887 0.145 0.269 0.651 6.182 0.179 0.651 10.701 1350 chr6 99248275 99252655 + 0 NA Intergenic Intergenic -32115 NM_005604 5454 Hs.182505 NM_005604 ENSG00000184486 POU3F2 BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7 POU class 3 homeobox 2 protein-coding 0.171 0.102 1.940 0.217 0.121 0.064 0.143 0.044 0.043 0.141 0.048 1.955 4.347 0.124 0.010 0.076 2.271 0.043 612 chr17 27051290 27056979 + 0 NA promoter-TSS (NM_138463) promoter-TSS (NM_138463) -185 NM_001160407 116238 Hs.499952 NM_138463 ENSG00000160606 TLCD1 - TLC domain containing 1 protein-coding 5.982 1.418 5.741 5.871 9.832 1.779 5.005 1.773 9.935 6.413 3.360 8.859 9.076 3.969 2.009 4.564 3.874 2.288 2.482 2.117 3.992 4.307 1391 chr7 14019535 14032680 + 0 NA promoter-TSS (NM_001163151) promoter-TSS (NM_001163151) 32 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 1.160 0.132 3.874 0.927 1.594 0.503 4.138 0.071 0.376 0.362 0.156 0.945 0.428 0.408 2.503 1.089 1.360 3.076 1.737 0.111 1.039 0.980 936 chr20 3215744 3221383 + 0 NA promoter-TSS (NM_032034) promoter-TSS (NM_032034) -190 NM_032034 83959 Hs.105607 NM_032034 ENSG00000088836 SLC4A11 BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2 solute carrier family 4 member 11 protein-coding 2.584 0.088 0.249 0.190 1.906 0.110 1.100 0.325 0.391 2.257 1.286 7.382 0.887 0.198 1.073 0.535 0.473 0.685 0.419 0.176 0.081 0.622 1277 chr5 173958834 173964129 + 0 NA Intergenic LTR16C|LTR|ERVL -190094 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 0.585 7.947 0.323 3.905 1.093 0.914 0.758 1.132 1.512 1.149 1.664 4.229 1.208 0.634 0.678 0.798 2.072 2.393 0.083 0.282 1.578 91 chr1 155193947 155198214 + 0 NA intron (NR_002188, intron 1 of 12) AluSz|SINE|Alu 1245 NR_002188 2630 Hs.719930 NR_002188 ENSG00000160766 GBAP1 GBAP glucosylceramidase beta pseudogene 1 pseudo 5.695 1.708 1.610 2.745 4.169 1.960 3.820 2.133 10.727 1.632 0.498 4.789 5.774 3.865 3.638 1.386 1.167 4.603 0.953 3.775 1.956 4.716 1240 chr5 131823598 131834710 + 0 NA Intergenic Intergenic -2689 NM_002198 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 1.884 1.158 4.959 1.824 1.912 2.122 3.345 0.814 2.621 0.990 0.854 3.204 1.666 5.462 1.716 0.773 0.609 3.515 1.854 2.160 1.304 1.098 1086 chr3 71626762 71636008 + 0 NA intron (NM_001012505, intron 1 of 6) CpG-18683 1519 NM_001244808 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 1.439 2.853 0.681 0.567 13.145 0.732 5.651 1.550 6.591 0.986 0.524 4.171 3.281 3.938 2.553 3.857 3.317 1.184 0.077 5.836 0.422 0.490 701 chr17 73670776 73705152 + 0 NA intron (NM_001301855, intron 4 of 11) intron (NM_001301855, intron 4 of 11) -24695 NM_001003716 9400 Hs.632229 NM_004259 ENSG00000108469 RECQL5 RECQ5 RecQ like helicase 5 protein-coding 0.538 1.526 5.327 1.258 7.758 0.842 2.993 1.751 7.460 1.871 1.413 4.426 5.723 0.977 1.514 0.202 0.213 3.839 0.628 3.704 0.639 1.771 467 chr15 51349484 51362381 + 0 NA intron (NM_207381, intron 2 of 2) intron (NM_207381, intron 2 of 2) 30970 NM_001311175 388121 Hs.306343 NM_207381 ENSG00000183578 TNFAIP8L3 TIPE3 TNF alpha induced protein 8 like 3 protein-coding 0.117 0.058 0.109 4.825 0.229 0.123 0.109 0.026 0.021 0.141 0.038 0.198 0.124 0.066 0.143 1.017 1.148 0.026 0.175 5.935 0.014 474 chr15 63793198 63798300 + 0 NA promoter-TSS (NM_001256702) promoter-TSS (NM_001256702) -961 NR_046341 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 6.095 2.233 4.980 2.392 4.658 3.098 5.604 1.049 4.389 2.894 1.484 5.840 4.489 2.796 3.047 2.521 1.574 4.692 8.805 3.995 1.315 3.414 481 chr15 67332896 67338199 + 0 NA intron (NR_135686, intron 2 of 5) MIRb|SINE|MIR 20973 NR_135686 102723493 Hs.419760 NR_135686 LOC102723493 - uncharacterized LOC102723493 ncRNA 0.442 2.247 0.231 0.202 1.483 0.703 2.871 0.500 1.598 0.874 0.516 2.003 0.474 0.968 0.600 0.063 0.022 4.955 0.279 5.911 0.110 1.478 867 chr2 103565391 103600877 + 0 NA TTS (NR_135530) TTS (NR_135530) 17753 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 0.228 0.028 0.089 11.458 0.183 0.058 0.065 0.106 0.252 0.210 0.025 0.098 0.179 0.107 0.167 0.084 0.113 0.011 0.007 0.053 11.071 0.055 214 chr11 1847251 1857215 + 0 NA Intergenic Intergenic -3307 NM_001290334 90019 Hs.161031 NM_138567 ENSG00000149043 SYT8 - synaptotagmin 8 protein-coding 1.226 0.224 0.291 0.107 3.305 0.239 2.448 0.943 2.128 4.112 1.631 7.240 0.729 0.195 1.786 0.048 0.048 0.783 1.665 0.291 0.035 0.701 564 chr16 75277254 75289521 + 0 NA intron (NM_001170715, intron 1 of 6) intron (NM_001170715, intron 1 of 6) -1163 NM_001170719 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 1.435 2.742 4.763 0.532 1.431 2.878 3.611 1.453 4.162 1.655 0.399 4.791 1.639 2.083 1.646 0.204 0.186 2.643 3.188 4.335 0.159 1.433 817 chr19 50378746 50382304 + 0 NA promoter-TSS (NM_024682) promoter-TSS (NM_024682) 119 NM_001098632 84335 Hs.515542 NM_032375 ENSG00000204673 AKT1S1 Lobe|PRAS40 AKT1 substrate 1 protein-coding 7.831 2.218 4.415 5.717 8.999 4.397 5.567 1.695 7.855 8.193 2.476 7.025 12.223 5.210 3.068 2.590 2.639 3.811 3.945 3.383 3.169 1.804 563 chr16 75087380 75100672 + 0 NA intron (NM_032268, intron 1 of 4) AluSg|SINE|Alu 56644 NM_153486 197257 Hs.380929 NM_153486 ENSG00000166816 LDHD DLD lactate dehydrogenase D protein-coding 2.996 0.039 0.797 0.134 0.717 0.946 0.711 0.036 0.129 0.773 0.281 1.488 1.027 0.145 0.634 0.313 0.449 0.561 0.784 0.133 0.148 0.521 731 chr18 55094377 55109538 + 0 NA promoter-TSS (NM_004852) promoter-TSS (NM_004852) -960 NM_004852 9480 Hs.194725 NM_004852 ENSG00000119547 ONECUT2 OC-2|OC2 one cut homeobox 2 protein-coding 0.220 0.025 6.730 0.148 0.114 0.034 0.092 0.105 0.313 0.138 0.016 0.025 0.065 0.088 0.035 0.102 0.105 0.013 0.050 0.021 0.031 0.019 657 chr17 44654430 44669399 + 0 NA Intergenic Intergenic -4826 NM_001113738 51326 Hs.559259 NM_016632 ENSG00000185829 ARL17A ARF1P2|ARL17P1 ADP ribosylation factor like GTPase 17A protein-coding 2.122 0.339 0.661 3.904 2.106 1.202 0.803 0.289 1.635 1.192 1.364 3.590 7.094 0.987 1.523 0.887 1.074 0.603 0.757 0.342 1.357 0.359 229 chr11 34607255 34626314 + 0 NA Intergenic Intergenic -25804 NM_012153 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 0.372 0.247 1.613 0.129 0.191 1.336 1.655 0.754 0.913 0.727 7.854 1.123 0.795 0.166 0.154 0.029 0.045 1.238 0.097 0.751 0.037 0.436 768 chr19 33781087 33794777 + 0 NA Intergenic Intergenic 5538 NM_001287424 1050 Hs.76171 NM_004364 ENSG00000245848 CEBPA C/EBP-alpha|CEBP CCAAT/enhancer binding protein alpha protein-coding 0.806 0.101 0.504 0.378 0.692 0.146 0.473 0.156 0.396 1.857 1.751 2.552 6.529 0.168 0.312 0.274 0.160 0.045 0.024 0.041 0.142 0.148 1092 chr3 122281631 122284436 + 0 NA promoter-TSS (NM_138287) promoter-TSS (NM_138287) 114 NM_001146102 83666 Hs.518200 NM_031458 ENSG00000138496 PARP9 ARTD9|BAL|BAL1|MGC:7868 poly(ADP-ribose) polymerase family member 9 protein-coding 1.826 1.412 8.655 1.510 6.977 1.294 5.313 1.294 7.620 1.163 0.636 6.776 6.613 4.027 3.855 1.660 1.248 4.350 2.837 2.581 2.010 3.155 673 chr17 48761411 48777630 + 0 NA TTS (NM_003786) TTS (NM_003786) 15750 NM_052855 91369 Hs.463426 NM_052855 ENSG00000154945 ANKRD40 - ankyrin repeat domain 40 protein-coding 3.677 0.092 2.253 0.131 0.707 0.667 3.406 0.256 0.697 0.336 0.083 0.851 0.599 0.475 1.928 0.059 0.087 1.408 0.238 0.206 0.129 2.226 503 chr15 80840344 80844174 + 0 NA intron (NM_014862, intron 8 of 18) L1MC4a|LINE|L1 13026 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 0.111 3.882 0.107 0.213 0.248 0.081 5.441 2.058 13.159 0.295 0.063 0.440 0.161 0.753 0.571 0.061 6.223 0.316 9.245 0.121 1.116 68 chr1 94764023 94767929 + 0 NA Intergenic Intergenic -52660 NM_001328664 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 1.090 0.063 0.525 0.048 0.202 0.049 2.552 0.436 0.848 0.347 0.410 1.102 0.601 0.963 0.240 0.039 0.093 3.013 2.009 0.372 0.088 8.915 1483 chr8 49814557 49818993 + 0 NA Intergenic Intergenic 17224 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 0.143 0.121 0.121 0.549 0.016 0.062 2.554 7.479 0.377 0.162 0.213 0.224 0.140 0.024 0.052 0.028 0.061 0.009 0.124 0.078 0.363 315 chr12 11800785 11804457 + 0 NA promoter-TSS (NM_001987) promoter-TSS (NM_001987) -167 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 5.700 1.882 4.937 3.086 3.925 3.445 8.769 0.907 4.836 5.172 1.403 8.358 5.730 2.634 5.160 3.874 3.073 4.963 6.929 4.498 2.833 2.976 338 chr12 53691059 53694465 + 0 NA promoter-TSS (NM_021640) promoter-TSS (NM_021640) -708 NM_021640 60314 Hs.655988 NM_021640 ENSG00000139637 C12orf10 Gamm1|MST024|MSTP024|MYG|MYG1 chromosome 12 open reading frame 10 protein-coding 1.061 3.165 1.802 2.031 1.995 1.428 1.892 0.463 1.102 1.492 0.662 2.828 3.849 3.536 1.422 0.678 0.536 1.207 0.487 7.285 1.000 0.634 1347 chr6 57175080 57183466 + 0 NA promoter-TSS (NM_001282488) promoter-TSS (NM_001282488) -330 NM_001282488 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 primase (DNA) subunit 2 protein-coding 1.108 0.635 1.708 0.681 2.554 0.547 6.061 1.196 4.810 0.864 0.404 1.839 1.924 0.819 0.509 0.687 0.650 2.603 0.706 1.469 0.563 0.633 761 chr19 20605155 20607834 + 0 NA intron (NR_036455, intron 1 of 2) AluSg|SINE|Alu 1277 NR_036455 664701 Hs.631635 NM_001039884 ZNF826P ZNF826 zinc finger protein 826, pseudogene pseudo 0.079 9.729 2.259 0.029 0.093 2.231 8.038 0.796 0.105 0.039 1.440 1.617 0.042 2.883 576 chr16 88270309 88277251 + 0 NA Intergenic Intergenic 45893 NR_110944 101928880 Hs.634835 NR_110944 ENSG00000260420 LOC101928880 LA16c-444G7.2 uncharacterized LOC101928880 ncRNA 0.491 0.678 1.420 0.431 0.422 0.286 0.512 1.772 2.054 0.658 0.411 1.930 1.725 0.820 0.193 0.068 0.087 1.523 1.425 1.927 0.116 0.586 222 chr11 12694866 12720533 + 0 NA intron (NM_021961, intron 2 of 12) MER94|DNA|hAT-Blackjack 11730 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 1.805 0.762 1.713 0.408 1.726 4.511 2.155 0.306 1.449 1.307 0.243 3.562 0.530 1.191 1.283 0.656 0.636 1.794 1.077 1.357 0.394 1.954 1504 chr8 102370551 102391928 + 0 NA non-coding (NR_002182, exon 1 of 1) non-coding (NR_002182, exon 1 of 1) 118 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACAP1 FKSG17 nascent polypeptide associated complex alpha subunit pseudogene 1 pseudo 2.001 0.104 0.597 0.468 0.655 0.415 2.884 0.175 0.369 1.508 0.702 1.865 8.559 0.208 0.710 0.825 1.151 0.152 1.349 0.292 0.541 1.038 25 chr1 23878015 23896975 + 0 NA Intergenic MIR3|SINE|MIR -1210 NM_002167 3399 Hs.76884 NM_002167 ENSG00000117318 ID3 HEIR-1|bHLHb25 inhibitor of DNA binding 3, HLH protein protein-coding 2.079 0.901 0.376 8.424 6.933 3.393 2.578 0.994 2.575 3.476 0.913 4.847 2.380 1.903 1.497 2.563 2.392 2.639 0.100 1.893 7.478 0.509 738 chr19 1016046 1032236 + 0 NA Intergenic AluJo|SINE|Alu -2133 NM_201277 1265 Hs.651512 NM_004368 ENSG00000064666 CNN2 - calponin 2 protein-coding 1.658 1.025 1.431 2.034 3.957 3.225 4.086 0.487 1.898 2.761 0.696 3.589 3.533 2.411 1.410 0.797 0.644 2.284 1.235 1.115 1.023 0.658 1415 chr7 55188019 55203607 + 0 NA intron (NM_001346900, intron 1 of 27) intron (NM_001346900, intron 1 of 27) 18303 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 0.902 2.292 1.697 0.118 1.357 0.880 7.602 1.086 3.448 1.579 0.867 4.669 2.503 3.432 1.380 0.085 0.108 5.361 3.166 5.452 0.076 3.451 484 chr15 67466152 67472738 + 0 NA intron (NM_001145102, intron 5 of 8) intron (NM_001145102, intron 5 of 8) 10952 NM_001145104 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 0.313 3.403 0.893 0.341 0.625 0.244 2.913 0.718 1.209 0.365 0.222 1.331 0.848 0.958 0.598 0.047 0.054 1.813 0.716 6.799 0.106 0.495 1243 chr5 133858282 133873303 + 0 NA intron (NM_015288, intron 1 of 10) intron (NM_015288, intron 1 of 10) 3994 NM_015288 23338 Hs.732155 NM_015288 ENSG00000043143 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 1.442 1.031 4.225 4.740 9.231 2.978 2.595 0.414 1.212 1.225 1.678 2.950 4.468 2.548 1.248 2.317 1.713 2.370 1.791 1.528 3.099 1.224 1078 chr3 62585572 62594533 + 0 NA intron (NM_183394, intron 6 of 27) L1MCa|LINE|L1 -230862 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 0.094 0.782 0.521 0.382 0.225 0.086 1.639 0.183 0.537 0.230 0.009 0.829 0.143 0.220 0.927 0.156 0.188 4.383 2.075 1.753 0.393 6.166 1036 chr22 36832145 36868989 + 0 NA Intergenic AluSg|SINE|Alu 27120 NM_012473 25828 Hs.211929 NM_012473 ENSG00000100348 TXN2 COXPD29|MT-TRX|MTRX|TRX2 thioredoxin 2 protein-coding 1.325 0.259 0.684 0.339 0.476 0.264 2.333 1.099 2.117 0.552 0.229 0.722 0.881 0.731 0.508 0.196 0.208 1.522 0.227 0.553 0.254 0.519 305 chr12 6440604 6455685 + 0 NA intron (NM_001346092, intron 1 of 10) intron (NM_001346092, intron 1 of 10) 3139 NR_144351 7132 Hs.279594 NM_001065 ENSG00000067182 TNFRSF1A CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60 TNF receptor superfamily member 1A protein-coding 7.047 2.174 2.029 2.205 4.185 3.825 5.499 0.780 3.545 4.469 2.434 6.472 8.010 3.194 3.321 0.278 0.267 6.840 3.628 4.409 1.026 2.121 1253 chr5 139689816 139709939 + 0 NA Intergenic AluSz6|SINE|Alu -17188 NM_002622 5201 Hs.483564 NM_002622 ENSG00000113068 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 0.170 0.469 0.386 0.189 0.287 0.461 3.719 0.745 1.195 0.232 0.821 0.238 2.107 0.435 0.361 0.101 0.107 3.544 1.682 1.151 0.080 1.254 928 chr2 240164799 240218875 + 0 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) -35320 NR_036229 100423043 NR_036229 ENSG00000265215 MIR4269 - microRNA 4269 ncRNA 0.360 0.087 1.069 4.062 0.335 1.890 0.512 0.109 0.231 0.416 0.242 0.501 2.636 0.378 0.290 2.880 2.945 0.344 0.158 0.169 3.461 0.138 1265 chr5 154133012 154137492 + 0 NA intron (NM_015315, intron 1 of 18) CpG 42790 NM_015315 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 3.975 2.432 7.027 8.194 13.864 3.929 8.019 1.725 5.784 7.050 2.778 10.176 8.469 6.974 2.039 5.538 4.286 4.936 3.354 2.881 4.653 2.330 623 chr17 35765047 35768363 + 0 NA promoter-TSS (NM_001291918) promoter-TSS (NM_001291918) 197 NM_198834 31 Hs.160556 NM_000664 ENSG00000278540 ACACA ACAC|ACACAD|ACC|ACC1|ACCA acetyl-CoA carboxylase alpha protein-coding 3.583 2.497 3.278 6.478 7.947 3.567 4.990 0.636 4.049 4.749 2.267 6.371 7.958 3.070 1.720 3.127 2.448 4.273 2.338 3.173 4.167 7.292 544 chr16 30950625 30970577 + 0 NA TTS (NM_001282351) TTS (NM_001282351) 196 NM_152288 93129 Hs.745104 NM_152288 ENSG00000175938 ORAI3 TMEM142C ORAI calcium release-activated calcium modulator 3 protein-coding 0.874 0.655 2.064 1.241 2.272 0.760 2.628 0.573 1.337 1.381 0.616 2.811 3.907 1.169 0.649 0.522 0.346 1.124 0.847 0.965 0.913 0.473 1512 chr8 116653821 116685371 + 0 NA intron (NM_001282903, intron 1 of 6) intron (NM_001282903, intron 1 of 6) 10643 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 0.351 0.067 0.200 4.616 1.641 0.090 0.569 0.027 0.168 0.605 0.120 5.117 0.427 0.113 0.367 1.055 1.523 0.067 0.061 0.113 4.933 0.060 1526 chr8 144652658 144662472 + 0 NA intron (NM_145201, intron 10 of 12) intron (NM_145201, intron 10 of 12) -2637 NM_001100878 642475 Hs.531406 NM_001100878 ENSG00000204839 MROH6 C8orf73 maestro heat like repeat family member 6 protein-coding 1.037 1.022 0.567 0.901 3.919 1.279 0.612 0.538 1.174 2.046 0.674 10.157 0.557 1.283 0.881 0.226 0.184 0.373 3.048 1.660 0.371 1.873 1196 chr4 168991670 169076548 + 0 NA intron (NM_007193, intron 1 of 11) AluSz|SINE|Alu 20421 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 0.373 0.064 0.507 0.063 6.740 0.048 0.194 0.053 0.114 0.469 0.102 0.601 0.253 0.073 0.187 0.010 0.017 0.064 0.583 0.190 0.038 0.159 1114 chr3 160165066 160170348 + 0 NA promoter-TSS (NM_173084) promoter-TSS (NM_173084) -81 NM_173084 286827 Hs.212957 NM_173084 ENSG00000213186 TRIM59 IFT80L|MRF1|RNF104|TRIM57|TSBF1 tripartite motif containing 59 protein-coding 0.813 0.961 1.454 2.040 10.063 0.764 2.214 2.451 12.366 2.470 1.325 2.601 8.608 3.531 1.059 1.853 1.867 1.521 0.872 1.916 0.848 2.085 217 chr11 9774238 9784334 + 0 NA promoter-TSS (NR_036485) promoter-TSS (NR_036485) -554 NR_036485 283104 Hs.632156 NR_036485 ENSG00000246273 SBF2-AS1 - SBF2 antisense RNA 1 ncRNA 1.654 0.780 2.425 0.716 2.923 1.299 2.925 0.968 4.065 8.561 2.058 6.465 5.353 1.882 1.135 0.741 0.507 2.772 0.989 1.047 0.340 0.781 328 chr12 27891151 27935863 + 0 NA Intergenic AluSc8|SINE|Alu 10702 NM_001146221 100287284 Hs.202178 NM_001146221 ENSG00000205693 MANSC4 - MANSC domain containing 4 protein-coding 0.593 0.150 0.290 2.484 1.131 0.218 0.479 0.100 0.222 0.819 0.377 0.850 2.128 0.418 0.380 0.740 0.872 0.432 0.284 0.221 0.938 0.197 239 chr11 46291861 46298184 + 0 NA Intergenic MER104|DNA|TcMar-Tc2 -4167 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS cAMP responsive element binding protein 3 like 1 protein-coding 3.204 0.313 1.550 0.085 0.451 0.212 2.197 1.999 3.909 0.468 0.039 0.478 0.166 0.211 0.594 0.048 0.020 2.423 0.100 0.635 0.073 0.239 122 chr1 204041352 204084113 + 0 NA intron (NM_005686, intron 1 of 13) intron (NM_005686, intron 1 of 13) 20486 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY-box 13 protein-coding 1.051 0.191 0.413 3.164 1.642 0.790 0.658 0.181 0.293 0.756 0.359 2.411 1.637 0.528 0.847 0.827 0.687 0.658 0.442 0.289 2.108 0.481 1223 chr5 56467214 56475035 + 0 NA promoter-TSS (NM_001127235) promoter-TSS (NM_001127235) -151 NM_001127235 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 2.177 1.599 2.344 2.804 5.286 2.060 3.541 0.563 2.958 2.369 0.879 2.807 7.688 7.492 1.984 1.345 1.399 1.796 2.018 2.579 1.850 2.529 878 chr2 122257414 122290818 + 0 NA intron (NM_001142274, intron 6 of 37) L2c|LINE|L2 -14340 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 0.555 0.267 0.527 0.557 1.682 0.360 0.454 0.163 0.990 1.171 0.896 1.531 3.351 0.401 0.575 0.197 0.160 0.217 0.288 0.503 0.331 0.417 628 chr17 36603478 36613158 + 0 NA intron (NM_001199417, intron 1 of 23) intron (NM_001199417, intron 1 of 23) 23598 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 0.322 2.968 0.942 0.254 3.214 4.074 1.618 0.784 2.963 1.075 2.578 6.118 2.221 2.431 0.824 0.047 0.155 6.852 0.255 6.172 0.059 2.445 158 chr10 3663941 3668595 + 0 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) 161205 NM_001300 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 0.296 0.160 0.152 0.046 0.207 0.241 0.040 2.918 10.645 0.210 0.141 0.144 0.166 0.059 0.105 1.805 0.027 0.311 0.073 3.748 269 chr11 65623813 65629504 + 0 NA promoter-TSS (NM_005507) promoter-TSS (NM_005507) -854 NM_005507 1072 Hs.170622 NM_005507 ENSG00000172757 CFL1 CFL|HEL-S-15|cofilin cofilin 1 protein-coding 5.263 1.640 4.034 4.839 9.301 4.458 8.444 2.012 7.082 4.867 2.046 8.125 7.862 3.044 3.891 2.921 2.963 4.601 3.985 2.505 3.001 2.644 281 chr11 96069891 96077539 + 0 NA promoter-TSS (NR_036125) promoter-TSS (NR_036125) -887 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 1.347 0.631 1.164 10.702 0.343 1.948 3.362 1.058 3.025 0.873 0.283 2.470 0.755 2.462 1.084 1.736 2.143 1.893 0.346 0.990 7.495 1.289 363 chr12 98907507 98916285 + 0 NA intron (NM_001032283, intron 1 of 8) AluSq10|SINE|Alu -1892 NR_027157 100128191 Hs.594042 NR_027157 ENSG00000257167 TMPO-AS1 - TMPO antisense RNA 1 ncRNA 1.941 0.987 1.649 5.508 8.868 3.381 2.471 0.781 4.760 3.356 0.898 4.585 6.455 2.187 2.562 2.525 2.212 3.453 2.447 1.620 4.371 1.850 46 chr1 44297381 44337183 + 0 NA intron (NM_001270466, intron 4 of 4) intron (NM_001270466, intron 4 of 4) 12988 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 0.467 0.112 0.105 1.541 0.267 0.267 0.514 0.617 1.949 1.052 0.861 1.235 4.832 0.327 0.299 0.055 0.064 1.109 0.052 0.209 0.686 0.301 1316 chr6 30897399 30903018 + 0 NA promoter-TSS (NM_205854).3 promoter-TSS (NM_205854).3 -256 NM_205854 389376 Hs.211267 NM_205854 ENSG00000196260 SFTA2 GSGL541|SFTPG|SP-G|UNQ541 surfactant associated 2 protein-coding 0.057 0.044 0.216 0.225 0.315 0.096 0.051 0.079 0.098 0.288 0.048 0.299 0.330 0.101 0.019 0.070 0.021 0.070 0.015 0.081 0.061 5.553 733 chr18 56529353 56534010 + 0 NA intron (NM_001318728, intron 1 of 10) intron (NM_001318728, intron 1 of 10) 358 NM_001318728 55205 Hs.529023 NM_018181 ENSG00000074657 ZNF532 - zinc finger protein 532 protein-coding 1.176 0.053 1.604 3.467 3.543 1.946 2.924 1.049 3.407 5.713 0.531 3.904 2.195 2.695 1.139 4.235 3.731 1.208 0.262 0.118 4.821 0.234 1418 chr7 72473749 72477927 + 0 NA promoter-TSS (NR_130940) promoter-TSS (NR_130940) 610 NR_040583 54441 Hs.632310 NM_018991 STAG3L1 STAG3L1P|STAG3L2|STAG3L3 stromal antigen 3-like 1 (pseudogene) pseudo 4.643 1.185 3.953 3.438 8.599 3.163 4.590 0.986 5.962 6.018 1.768 9.876 13.644 6.108 2.781 1.912 2.024 2.921 2.195 1.891 2.032 2.064 997 chr21 16428959 16439057 + 0 NA intron (NM_003489, intron 1 of 3) intron (NM_003489, intron 1 of 3) 3118 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 1.511 2.441 5.524 1.006 0.927 1.291 3.205 0.469 2.296 1.801 0.230 1.999 1.227 1.546 1.471 1.438 1.161 0.584 0.910 5.293 0.602 1.891 630 chr17 36898255 36909964 + 0 NA intron (NM_007144, intron 2 of 10) CpG 449 NM_007144 7703 Hs.371617 NM_007144 ENSG00000277258 PCGF2 MEL-18|RNF110|ZNF144 polycomb group ring finger 2 protein-coding 3.622 1.259 3.002 3.366 4.641 1.691 4.287 0.509 2.291 2.141 1.860 6.732 3.080 2.090 1.143 2.340 1.931 1.870 1.171 1.306 2.584 1.050 36 chr1 28925040 28929680 + 0 NA Intergenic FLAM_C|SINE|Alu 8353 NM_001193532 115273 Hs.652321 NM_152304 ENSG00000188060 RAB42 - RAB42, member RAS oncogene family protein-coding 0.185 0.640 0.251 0.157 0.325 0.100 0.845 0.614 1.485 0.298 0.034 0.548 0.357 0.773 0.542 0.018 0.121 0.953 0.370 1.283 0.124 4.824 1368 chr6 135565121 135579809 + 0 NA Intergenic Intergenic 12167 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 0.168 0.025 0.132 5.322 0.136 0.057 0.075 0.026 0.043 0.171 0.016 0.129 0.072 0.124 0.177 0.379 0.610 0.028 0.003 0.144 3.312 0.046 748 chr19 11997941 12001205 + 0 NA intron (NM_021915, intron 1 of 4) AluSx1|SINE|Alu 974 NM_021915 7620 Hs.565280 NM_021915 ENSG00000198429 ZNF69 Cos5|hZNF3 zinc finger protein 69 protein-coding 0.238 8.735 0.688 0.425 0.353 3.111 0.849 3.158 0.113 0.115 0.130 1.465 0.642 1.284 1.000 0.997 0.449 0.177 1.103 472 chr15 60859619 60885538 + 0 NA intron (NM_134260, intron 1 of 11) intron (NM_134260, intron 1 of 11) 12129 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 0.230 0.067 0.131 5.603 0.326 0.148 0.435 0.016 0.064 0.270 0.099 0.232 0.776 0.100 0.168 0.935 1.299 0.063 0.070 0.073 2.589 0.033 1449 chr7 110867282 110874929 + 0 NA intron (NM_001244606, intron 4 of 6) (TG)n|Simple_repeat|Simple_repeat 140043 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 0.273 0.097 0.507 0.084 0.339 0.058 0.183 0.030 0.182 0.170 0.020 0.172 0.169 0.162 0.145 0.010 0.016 0.454 0.099 0.363 0.015 4.038 317 chr12 12866358 12882348 + 0 NA 3' UTR (NM_004064, exon 3 of 3) 3' UTR (NM_004064, exon 3 of 3) 4149 NM_004064 1027 Hs.238990 NM_004064 ENSG00000111276 CDKN1B CDKN4|KIP1|MEN1B|MEN4|P27KIP1 cyclin dependent kinase inhibitor 1B protein-coding 5.715 2.176 3.761 3.518 8.541 4.679 9.509 1.003 6.525 5.768 2.840 9.901 11.253 4.087 5.438 2.783 2.197 9.342 6.628 5.092 3.151 6.032 608 chr17 20942581 20949424 + 0 NA exon (NM_015276, exon 1 of 13) exon (NM_015276, exon 1 of 13) 350 NM_015276 23326 Hs.462492 NM_015276 ENSG00000124422 USP22 USP3L ubiquitin specific peptidase 22 protein-coding 1.862 1.050 1.187 2.395 25.752 1.452 3.892 0.879 2.948 3.248 0.878 3.873 9.272 3.061 3.308 1.523 1.274 1.595 1.221 0.961 1.669 0.565 711 chr17 78762639 78767752 + 0 NA intron (NM_001163034, intron 6 of 29) intron (NM_001163034, intron 6 of 29) 14237 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 2.369 0.650 4.091 0.292 1.496 1.605 7.628 1.072 1.997 0.846 0.253 2.880 1.384 2.957 4.083 1.210 1.427 7.320 3.082 2.147 0.380 4.192 132 chr1 225625788 225643680 + 0 NA Intergenic Intergenic -18177 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 1.163 0.062 0.667 0.383 0.845 0.411 0.576 0.147 0.146 0.868 1.050 2.336 5.668 0.334 0.647 0.113 0.157 0.538 0.629 0.150 0.217 1.633 1254 chr5 139716323 139731678 + 0 NA intron (NM_001945, intron 2 of 5) MIRb|SINE|MIR 2188 NM_001945 1839 Hs.799 NM_001945 ENSG00000113070 HBEGF DTR|DTS|DTSF|HEGFL heparin binding EGF like growth factor protein-coding 0.414 0.609 0.443 0.223 0.686 0.305 1.116 0.192 0.426 0.732 0.631 1.307 7.987 0.763 0.282 0.126 0.159 1.108 0.972 0.789 0.097 1.306 1234 chr5 98262557 98266278 + 0 NA promoter-TSS (NR_036530) promoter-TSS (NR_036530) -421 NR_036530 100289230 Hs.552095 NR_036530 LOC100289230 - uncharacterized LOC100289230 ncRNA 3.171 1.663 8.362 5.411 5.942 3.686 5.323 0.664 4.261 3.222 1.356 3.644 4.076 5.508 1.819 2.553 1.510 4.115 2.329 2.285 2.961 1.517 892 chr2 173088016 173098804 + 0 NA Intergenic Intergenic 125676 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-AS1 TCONS_00003049 DLX2 antisense RNA 1 (head to head) ncRNA 0.290 0.356 0.111 0.295 7.961 0.121 0.598 0.175 0.186 3.035 1.401 2.715 6.450 0.201 0.252 0.051 0.056 0.207 0.233 0.869 0.159 0.386 1314 chr6 30837219 30859277 + 0 NA Intergenic Intergenic -2142 NM_001297652 780 Hs.631988 NM_001954 ENSG00000204580 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding 1.659 0.522 1.678 0.703 7.079 0.554 0.750 0.483 0.849 3.000 2.592 10.407 8.167 1.036 0.589 0.243 0.346 0.323 0.914 0.662 0.527 1.108 1428 chr7 74167773 74175856 + 0 NA intron (NM_001163636, intron 31 of 33) AluSz|SINE|Alu -16495 NM_000265 653361 Hs.647047 NM_000265 ENSG00000158517 NCF1 NCF1A|NOXO2|SH3PXD1A|p47phox neutrophil cytosolic factor 1 protein-coding 0.526 1.989 0.178 0.185 0.827 0.290 0.863 0.342 0.535 1.898 1.089 5.880 6.987 5.217 0.601 0.185 0.345 4.670 0.031 4.840 0.043 0.350 546 chr16 31139165 31154679 + 0 NA 5' UTR (NM_002773, exon 1 of 6) 5' UTR (NM_002773, exon 1 of 6) 161 NM_002773 5652 Hs.75799 NM_002773 ENSG00000052344 PRSS8 CAP1|PROSTASIN protease, serine 8 protein-coding 1.791 0.295 0.490 0.448 1.167 0.386 2.397 0.431 0.833 1.047 0.829 3.056 2.094 0.925 0.568 0.196 0.115 0.909 0.829 0.337 0.148 1.078 537 chr16 24996763 25002288 + 0 NA intron (NM_018054, intron 1 of 18) intron (NM_018054, intron 1 of 18) 27174 NM_001006634 55114 Hs.373793 NM_018054 ENSG00000140750 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 0.874 2.510 2.023 0.348 0.355 1.792 3.225 0.573 1.663 0.325 0.029 0.562 0.639 1.126 0.303 0.028 5.999 2.206 7.523 0.180 3.153 1474 chr8 37553251 37557052 + 0 NA exon (NM_025069, exon 2 of 2) exon (NM_025069, exon 2 of 2) 1882 NM_025069 80139 Hs.288042 NM_025069 ENSG00000183779 ZNF703 NLZ1|ZEPPO1|ZNF503L|ZPO1 zinc finger protein 703 protein-coding 0.282 2.474 4.400 5.330 8.227 1.242 0.679 0.276 0.994 4.090 3.261 1.872 3.697 1.166 0.924 3.506 1.563 0.678 0.034 2.713 2.814 0.100 522 chr16 1727683 1743498 + 0 NA intron (NM_144570, intron 2 of 4) intron (NM_144570, intron 2 of 4) 7312 NM_144570 90861 Hs.513261 NM_144570 ENSG00000206053 HN1L C16orf34|L11 hematological and neurological expressed 1 like protein-coding 1.114 1.218 0.836 2.982 1.486 2.027 4.370 0.434 0.841 1.056 0.291 1.979 1.176 1.517 0.759 1.059 0.894 1.740 2.240 2.795 1.394 2.158 125 chr1 211430090 211435120 + 0 NA promoter-TSS (NM_001136224) promoter-TSS (NM_001136224) -103 NM_001136224 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 5.425 0.788 3.213 6.123 8.798 3.145 4.100 1.505 7.396 8.038 1.405 7.807 10.303 3.546 5.034 3.674 3.129 3.594 1.563 1.569 4.053 2.708 1632 chrX 153624739 153628435 + 0 NA promoter-TSS (NM_001303624) promoter-TSS (NM_001303624) -126 NM_001303624 6134 Hs.534404 NM_006013 ENSG00000147403 RPL10 AUTSX5|DXS648|DXS648E|L10|NOV|QM ribosomal protein L10 protein-coding 5.867 3.224 4.361 5.014 5.561 2.540 5.266 1.404 8.670 4.985 1.259 4.480 7.912 1.583 3.622 1.515 1.239 5.547 4.453 5.446 3.291 3.646 1423 chr7 73262405 73267285 + 0 NA Intergenic AluJb|SINE|Alu -7990 NM_152559 155368 Hs.647042 NM_152559 ENSG00000165171 WBSCR27 - Williams Beuren syndrome chromosome region 27 protein-coding 3.572 2.233 7.823 0.153 2.156 1.037 4.224 1.935 5.983 1.635 0.954 5.021 4.033 2.821 1.920 0.016 0.121 7.678 4.744 4.406 0.072 4.526 1018 chr21 45013147 45040155 + 0 NA intron (NM_007031, intron 7 of 8) intron (NM_007031, intron 7 of 8) 3219 NR_106718 102464825 NR_106718 ENSG00000278433 MIR6070 hsa-mir-6070 microRNA 6070 ncRNA 0.692 0.536 0.149 0.107 0.525 1.891 2.347 1.562 4.306 0.753 0.484 0.782 0.265 1.501 0.235 0.064 0.072 1.064 0.087 1.133 0.074 1.041 44 chr1 43146137 43159259 + 0 NA intron (NM_004559, intron 2 of 7) intron (NM_004559, intron 2 of 7) 4040 NR_132737 4904 Hs.473583 NM_004559 ENSG00000065978 YBX1 BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 Y-box binding protein 1 protein-coding 1.136 0.406 0.676 4.589 2.150 0.817 0.729 0.416 1.577 1.496 0.363 2.850 3.567 1.203 0.543 0.826 0.522 0.744 0.639 0.517 2.043 0.588 1125 chr3 176890272 176920357 + 0 NA intron (NM_001321194, intron 1 of 16) intron (NM_001321194, intron 1 of 16) 8958 NM_001321193 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 1.094 0.379 1.395 3.008 6.228 0.521 1.578 0.565 2.061 5.256 1.574 3.639 7.703 0.477 0.734 1.339 1.678 0.861 0.486 0.552 4.332 1.751 1007 chr21 36249208 36266978 + 0 NA intron (NM_001001890, intron 1 of 5) intron (NM_001001890, intron 1 of 5) 2894 NM_001122607 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 2.770 1.934 2.988 3.382 5.029 1.634 4.062 1.349 5.659 1.869 0.765 4.368 3.989 2.573 2.015 2.708 2.580 2.979 1.761 4.661 2.788 3.818 667 chr17 48103573 48144890 + 0 NA Intergenic Intergenic 8872 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 LOC284080 - uncharacterized LOC284080 ncRNA 0.967 1.613 3.224 0.176 4.008 1.538 5.236 1.241 3.475 1.642 1.423 6.153 3.595 1.226 2.289 0.148 0.144 5.513 3.349 3.413 0.059 2.875 1443 chr7 100398789 100402025 + 0 NA 3' UTR (NM_004444, exon 17 of 17) 3' UTR (NM_004444, exon 17 of 17) 24736 NM_004444 2050 Hs.437008 NM_004444 ENSG00000196411 EPHB4 HTK|MYK1|TYRO11 EPH receptor B4 protein-coding 2.410 0.612 7.863 0.121 2.872 0.663 2.039 0.737 3.352 1.073 3.280 10.833 5.338 2.316 3.618 0.123 0.039 5.297 7.281 1.491 0.072 1.376 741 chr19 1847262 1865691 + 0 NA intron (NM_031918, intron 1 of 1) intron (NM_031918, intron 1 of 1) 7088 NM_031918 83855 Hs.136280 NM_031918 ENSG00000129911 KLF16 BTEB4|DRRF|NSLP2 Kruppel like factor 16 protein-coding 1.263 0.759 1.726 2.184 2.876 2.485 2.658 0.320 1.246 2.148 0.540 3.509 2.589 1.003 0.684 0.886 0.599 1.435 1.071 0.854 1.139 0.421 1188 chr4 114893714 114904591 + 0 NA intron (NM_024590, intron 1 of 1) intron (NM_024590, intron 1 of 1) 1726 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ - arylsulfatase family member J protein-coding 1.810 0.742 4.643 5.819 5.368 0.243 2.358 0.291 1.270 0.180 0.287 2.871 0.130 0.852 1.640 0.996 1.547 1.388 0.668 1.477 3.490 2.283 1186 chr4 109086636 109091553 + 0 NA 5' UTR (NM_016269, exon 1 of 12) 5' UTR (NM_016269, exon 1 of 12) 413 NR_029374 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 0.991 0.242 0.172 4.552 1.890 0.846 0.303 0.033 0.126 0.662 0.524 1.211 2.554 0.042 0.446 3.803 3.204 0.165 0.025 0.068 3.432 0.078 998 chr21 16812393 16818033 + 0 NA Intergenic Intergenic -287131 NM_013396 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 0.133 0.022 0.096 0.057 0.098 3.642 0.100 0.015 0.104 0.198 0.015 0.066 0.221 0.037 0.149 0.112 0.367 0.007 0.100 0.120 0.033 1564 chr9 69872592 69891766 + 0 NA Intergenic Intergenic -124395 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 0.397 0.006 3.545 0.100 0.176 0.313 0.141 0.037 0.121 0.159 0.030 0.261 0.131 0.088 0.397 0.167 0.284 0.714 0.044 0.047 0.060 2.836 1280 chr5 175960037 175971693 + 0 NA Intergenic Intergenic -1444 NM_014901 22838 Hs.434888 NM_014901 ENSG00000146083 RNF44 - ring finger protein 44 protein-coding 1.628 0.622 3.433 4.634 6.983 1.386 4.354 0.568 1.708 2.494 1.734 4.404 9.833 2.140 2.529 2.362 1.451 1.006 0.731 0.554 2.802 1.368 714 chr17 79880066 79887032 + 0 NA intron (NM_002359, intron 1 of 2) AluY|SINE|Alu 2038 NM_002359 4097 Hs.252229 NM_002359 ENSG00000197063 MAFG hMAF MAF bZIP transcription factor G protein-coding 5.669 1.244 7.010 7.019 4.097 2.418 4.772 1.418 4.586 4.172 3.747 6.374 8.446 2.576 1.709 6.520 3.566 2.552 2.062 1.872 4.047 1.554 313 chr12 9799507 9804481 + 0 NA intron (NR_046444, intron 1 of 4) intron (NR_046444, intron 1 of 4) 1351 NR_046446 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2 member D pseudogene pseudo 7.740 0.871 1.600 0.365 5.517 2.065 8.426 0.332 1.263 5.189 3.097 6.917 9.992 4.845 3.567 1.275 1.554 3.890 7.411 2.140 0.435 2.428 529 chr16 3066675 3075085 + 0 NA intron (NM_016639, intron 1 of 3) CpG 567 NM_016639 51330 Hs.355899 NM_016639 ENSG00000006327 TNFRSF12A CD266|FN14|TWEAKR TNF receptor superfamily member 12A protein-coding 3.261 2.210 5.256 1.064 7.314 3.079 9.845 1.788 8.887 4.753 1.486 7.521 4.774 3.365 2.375 0.613 0.783 7.449 5.173 4.500 0.305 4.639 1545 chr8 146124894 146128672 + 0 NA promoter-TSS (NM_001109689) promoter-TSS (NM_001109689) 63 NM_001109689 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 2.515 0.918 1.758 3.644 8.718 1.883 15.812 2.129 10.154 4.664 1.146 4.452 5.134 2.747 2.098 2.412 1.638 1.436 1.380 0.738 1.639 1.169 1058 chr3 12267930 12273472 + 0 NA Intergenic Intergenic -58648 NM_138712 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 1.043 0.112 0.081 0.058 0.532 0.028 0.752 0.042 0.186 0.340 0.150 1.701 0.909 0.050 1.333 0.087 0.178 1.682 0.341 0.020 4.276 987 chr20 52440880 52451256 + 0 NA Intergenic Intergenic 46180 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 2.543 0.597 1.561 0.196 1.198 0.813 4.470 3.224 13.734 1.968 1.379 2.651 1.724 2.983 1.865 0.128 0.139 7.267 1.599 1.222 0.165 3.883 1324 chr6 35366251 35371768 + 0 NA intron (NM_001171818, intron 3 of 8) intron (NM_001171818, intron 3 of 8) -51129 NM_021922 2178 Hs.302003 NM_021922 ENSG00000112039 FANCE FACE|FAE Fanconi anemia complementation group E protein-coding 0.379 0.303 0.209 0.126 0.426 0.177 0.291 0.070 0.094 0.285 0.144 0.325 0.284 0.644 0.550 0.028 0.022 0.369 1.259 0.384 0.084 4.417 397 chr13 107509763 107514975 + 0 NA Intergenic Intergenic 206141 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 7.610 0.031 0.021 0.599 0.021 0.046 0.031 0.107 0.232 0.016 1.869 0.128 0.095 0.279 0.024 0.024 0.060 0.036 1150 chr3 189313892 189326526 + 0 NA intron (NM_001329964, intron 1 of 13) intron (NM_001329964, intron 1 of 13) 5674 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 0.245 0.088 0.177 0.123 nan 0.078 0.128 0.081 0.109 0.607 0.323 0.306 0.718 0.165 0.099 0.043 0.086 0.021 0.029 0.082 0.064 0.109 1096 chr3 128897592 128917689 + 0 NA Intergenic AluSx|SINE|Alu -4830 NM_003418 7555 Hs.518249 NM_003418 ENSG00000169714 CNBP CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9 CCHC-type zinc finger nucleic acid binding protein protein-coding 0.965 0.635 1.885 1.792 3.301 0.752 2.548 0.338 1.374 2.138 0.388 2.987 6.897 1.551 0.782 0.733 0.650 1.513 0.773 1.026 1.048 0.898 1535 chr8 145148306 145154140 + 0 NA intron (NM_001916, intron 3 of 6) intron (NM_001916, intron 3 of 6) 1285 NM_001916 1537 Hs.289271 NM_001916 ENSG00000179091 CYC1 MC3DN6|UQCR4 cytochrome c1 protein-coding 1.378 0.505 0.673 2.652 7.120 1.195 9.786 0.844 2.667 4.691 0.782 4.340 2.742 0.928 1.280 1.643 0.943 0.709 1.732 0.669 1.085 0.451 1335 chr6 44213349 44217184 + 0 NA intron (NM_001271972, intron 1 of 11) CpG 571 NM_007355 3326 Hs.509736 NM_007355 ENSG00000096384 HSP90AB1 D6S182|HSP84|HSP90B|HSPC2|HSPCB heat shock protein 90 alpha family class B member 1 protein-coding 3.134 1.711 3.772 4.341 5.361 2.955 4.995 2.010 7.415 2.766 2.164 5.282 8.622 8.956 1.890 1.984 1.938 3.134 1.816 2.502 2.143 3.439 908 chr2 202010849 202023812 + 0 NA intron (NR_040030, intron 2 of 6) intron (NR_040030, intron 2 of 6) 5185 NR_040030 65072 Hs.664613 NR_040030 ENSG00000226312 CFLAR-AS1 ALS2CR10 CFLAR antisense RNA 1 ncRNA 0.597 0.783 2.223 0.124 0.314 0.365 5.286 0.877 2.034 0.716 0.123 0.452 0.375 1.349 1.121 0.048 0.056 3.219 0.101 2.284 0.071 3.518 1191 chr4 129304249 129312676 + 0 NA Intergenic Intergenic -40709 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 1.355 0.235 0.793 0.152 2.121 0.189 0.926 1.921 4.757 0.648 0.161 0.882 0.161 0.802 0.457 0.046 0.129 0.919 0.164 0.447 0.068 1.872 459 chr14 105931435 105954726 + 0 NA promoter-TSS (NR_073085) promoter-TSS (NR_073085) -503 NR_073085 1397 Hs.534309 NM_001312 ENSG00000182809 CRIP2 CRIP|CRP2|ESP1 cysteine rich protein 2 protein-coding 4.035 0.438 0.652 0.179 4.619 1.289 0.855 0.454 1.124 0.517 0.179 5.511 0.976 0.347 1.383 0.226 0.146 0.787 0.495 0.569 0.103 0.251 284 chr11 113724812 113747662 + 0 NA intron (NM_001346254, intron 1 of 24) L1MB5|LINE|L1 10055 NM_001346259 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 0.472 0.146 0.408 5.443 1.599 0.726 0.461 0.138 0.595 0.690 0.517 1.814 1.609 0.429 0.237 0.865 0.880 0.187 0.125 0.151 4.226 0.240 823 chr19 55996007 56001331 + 0 NA 3' UTR (NM_020378, exon 3 of 3) 3' UTR (NM_020378, exon 3 of 3) -1201 NM_001144950 284297 Hs.554182 NM_182571 ENSG00000179954 SSC5D S5D-SRCRB scavenger receptor cysteine rich family member with 5 domains protein-coding 2.145 2.580 0.618 0.803 1.423 0.836 0.779 1.144 3.777 1.016 0.318 1.497 1.942 1.708 0.761 0.525 0.323 1.068 0.111 3.777 0.236 0.250 1340 chr6 45615150 45636125 + 0 NA Intergenic MIR3|SINE|MIR 235323 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 0.168 0.478 0.293 0.163 0.156 0.149 0.826 2.097 4.484 0.485 0.403 0.714 0.433 0.686 0.647 0.285 0.377 1.706 0.209 1.103 0.453 0.456 903 chr2 198361769 198367594 + 0 NA promoter-TSS (NM_002157) promoter-TSS (NM_002157) -40 NM_002157 3336 Hs.1197 NM_002157 ENSG00000115541 HSPE1 CPN10|EPF|GROES|HSP10 heat shock protein family E (Hsp10) member 1 protein-coding 3.957 1.573 2.381 5.544 9.413 3.164 6.347 0.734 4.443 3.325 1.253 4.994 11.092 8.535 2.214 2.694 2.126 1.792 1.062 2.605 2.914 1.420 247 chr11 61582154 61585808 + 0 NA 5' UTR (NM_001281502, exon 1 of 12) intron (NM_001281501, intron 1 of 11) 105 NM_001281502 9415 Hs.502745 NM_004265 ENSG00000134824 FADS2 D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13 fatty acid desaturase 2 protein-coding 4.703 2.539 3.022 8.749 1.494 4.137 5.542 1.677 4.778 3.591 2.880 8.403 6.819 6.574 4.972 6.414 4.096 3.400 6.897 4.164 5.051 3.649 165 chr10 11362766 11387571 + 0 NA 3' UTR (NM_001083591, exon 15 of 15) 3' UTR (NM_001083591, exon 15 of 15) 11505 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 0.170 0.093 3.940 0.158 0.049 0.034 0.025 0.080 0.209 0.064 0.137 0.216 0.059 0.072 0.106 0.220 0.093 0.007 0.027 2.264 0.111 289 chr11 118963497 118967193 + 0 NA 3' UTR (NM_002105, exon 1 of 1) 3' UTR (NM_002105, exon 1 of 1) 832 NM_002105 3014 Hs.477879 NM_002105 ENSG00000188486 H2AFX H2A.X|H2A/X|H2AX H2A histone family member X protein-coding 4.375 1.373 2.787 5.020 9.787 5.434 5.427 1.161 5.094 4.567 1.257 8.106 6.269 3.260 3.022 3.405 3.246 3.948 2.583 1.483 3.137 1.968 1495 chr8 73793396 73805370 + 0 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -121714 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 0.156 0.031 0.082 0.262 0.990 0.063 0.079 0.006 0.069 0.209 0.500 0.790 2.852 0.100 0.084 3.045 5.108 0.011 0.024 0.083 0.610 0.221 729 chr18 53133173 53221102 + 0 NA intron (NM_001330604, intron 3 of 19) intron (NM_001330604, intron 3 of 19) 863 NM_001243231 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 0.210 0.055 0.159 4.746 0.123 0.106 0.035 0.079 0.106 0.219 0.065 0.130 0.612 0.487 0.052 0.531 0.958 0.221 0.003 0.114 5.924 0.033 771 chr19 37327283 37332095 + 0 NA promoter-TSS (NM_001242802) promoter-TSS (NM_001242802) -403 NM_206894 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 0.356 0.283 7.387 0.089 1.010 0.946 2.939 0.673 2.767 0.482 0.367 0.059 0.409 1.711 0.713 0.023 0.076 0.916 0.315 0.300 0.025 1.406 2 chr1 1092795 1102095 + 0 NA Intergenic Intergenic -5039 NR_029639 406984 NR_029639 ENSG00000207730 MIR200B MIRN200B|mir-200b microRNA 200b ncRNA 2.655 0.240 1.892 5.349 5.403 0.137 0.812 0.590 0.718 3.449 1.457 5.649 0.945 1.979 0.884 2.790 1.824 0.335 2.821 0.384 4.075 1.930 808 chr19 47595532 47618500 + 0 NA intron (NM_015168, intron 2 of 14) AluY|SINE|Alu 9993 NM_015168 23211 Hs.104661 NM_015168 ENSG00000130749 ZC3H4 C19orf7 zinc finger CCCH-type containing 4 protein-coding 7.467 0.663 2.167 1.974 3.583 2.271 2.233 0.440 2.096 3.957 0.833 5.175 8.358 1.419 2.107 1.156 0.973 1.890 1.062 1.118 1.231 2.067 401 chr13 113861797 113865007 + 0 NA promoter-TSS (NM_001320655) promoter-TSS (NM_001320655) -168 NM_018386 55795 Hs.508769 NM_018386 ENSG00000126226 PCID2 F10 PCI domain containing 2 protein-coding 6.508 2.664 3.530 4.207 8.725 2.237 5.814 2.229 7.878 9.738 2.090 11.848 11.907 5.712 3.440 3.640 2.218 3.611 1.977 2.998 1.995 1.236 845 chr2 47400277 47405198 + 0 NA intron (NM_001305624, intron 1 of 6) intron (NM_001305624, intron 1 of 6) 1025 NM_001305624 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CAMII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 3.347 1.737 2.294 4.252 5.908 3.697 7.351 1.019 5.113 2.838 1.644 3.671 7.662 4.828 4.245 2.627 1.832 5.809 1.930 3.041 3.203 5.081 186 chr10 71196941 71219987 + 0 NA Intergenic Intergenic -2762 NM_012339 23555 Hs.499941 NM_012339 ENSG00000099282 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 2.283 0.765 1.164 0.274 0.516 1.894 1.085 0.157 0.215 0.451 0.502 2.882 1.289 0.410 1.179 0.081 0.090 0.925 1.841 1.625 0.140 1.925 1231 chr5 75983041 75991238 + 0 NA intron (NM_001285462, intron 18 of 23) intron (NM_001285462, intron 18 of 23) -21089 NR_028375 100302746 NR_028375 NCRUPAR NCRNA00193|ncR-uPAR non-protein coding RNA, upstream of F2R/PAR1 ncRNA 0.043 0.227 1.199 0.039 0.489 0.151 4.304 1.247 7.449 0.076 0.068 0.572 0.124 0.691 1.356 0.009 0.029 2.302 0.661 0.671 0.584 1119 chr3 169480560 169484395 + 0 NA TTS (NR_001566) TTS (NR_001566) 371 NR_001566 7012 Hs.436182 NR_001566 ENSG00000270141 TERC DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR telomerase RNA component ncRNA 1.582 0.807 1.896 4.285 7.658 0.708 4.072 1.202 3.713 2.648 1.008 8.013 19.801 2.307 1.102 1.989 1.718 1.361 1.377 1.228 2.431 1.613 1249 chr5 134826043 134834824 + 0 NA Intergenic Intergenic 41206 NM_006161 4762 Hs.248149 NM_006161 ENSG00000181965 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 0.350 0.155 0.216 0.382 1.519 0.053 0.361 0.018 0.070 0.612 3.082 1.642 3.196 0.064 0.321 0.279 0.265 0.039 0.882 0.492 0.325 0.157 147 chr1 240008169 240062476 + 0 NA intron (NM_001347716, intron 7 of 7) intron (NM_001347716, intron 7 of 7) 27850 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 0.263 0.016 0.086 5.807 0.343 0.081 0.039 0.026 0.105 0.310 0.065 0.217 0.738 0.078 0.123 1.043 1.773 0.010 0.005 0.037 7.485 0.049 973 chr20 49340669 49364813 + 0 NA intron (NM_032521, intron 1 of 2) intron (NM_032521, intron 1 of 2) 4660 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 2.062 0.646 5.316 0.360 1.130 0.982 2.676 0.244 0.543 0.876 0.446 2.223 3.305 1.833 0.981 0.261 0.149 2.585 2.521 1.344 0.234 4.660 1046 chr22 46170888 46182585 + 0 NA intron (NM_013236, intron 9 of 11) L1MDa|LINE|L1 20332 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 0.881 0.127 2.108 0.101 0.557 0.065 0.454 0.035 0.154 0.810 1.695 3.106 1.637 0.347 0.445 0.046 0.031 0.209 0.183 0.114 0.030 0.137 1142 chr3 184278677 184287975 + 0 NA intron (NM_004443, intron 1 of 15) intron (NM_004443, intron 1 of 15) 3739 NM_004443 2049 Hs.2913 NM_004443 ENSG00000182580 EPHB3 EK2|ETK2|HEK2|TYRO6 EPH receptor B3 protein-coding 1.001 0.398 0.240 0.416 nan 0.185 1.077 1.128 2.125 4.811 2.740 4.995 10.442 0.798 0.995 1.516 1.522 0.277 0.279 0.215 0.309 0.285 1291 chr6 12006963 12015236 + 0 NA Intergenic Intergenic -1625 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 2.502 1.154 3.337 1.628 5.871 2.098 4.865 1.733 7.291 3.679 2.019 1.847 4.388 3.302 1.668 1.438 1.036 2.766 1.515 2.081 1.947 3.061 915 chr2 212255194 212282008 + 0 NA intron (NM_005235, intron 25 of 27) MIRb|SINE|MIR 786306 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 0.614 0.018 0.575 0.710 4.537 0.026 0.134 0.017 0.062 0.122 0.078 0.384 0.103 0.114 0.128 0.052 0.041 0.028 0.385 0.046 0.246 0.471 319 chr12 12938875 12979106 + 0 NA Intergenic L2|LINE|L2 -7290 NM_016355 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 2.583 1.144 0.458 0.229 0.787 0.696 2.889 0.598 2.859 1.300 0.475 2.165 0.937 0.931 1.152 0.181 0.163 3.277 2.369 3.003 0.095 5.580 1586 chr9 114356392 114375713 + 0 NA intron (NR_034087, intron 2 of 2) MIRb|SINE|MIR -3917 NM_001146109 22949 Hs.584864 NM_012212 ENSG00000106853 PTGR1 LTB4DH|PGR1|ZADH3 prostaglandin reductase 1 protein-coding 2.206 0.186 0.477 0.437 0.814 1.211 0.832 0.445 1.719 1.911 0.771 0.753 10.793 0.680 0.501 0.529 0.598 0.454 0.215 0.345 0.238 0.239 1456 chr7 142504204 142508297 + 0 NA Intergenic Intergenic 27493 NR_001296 154754 Hs.449281 NR_001296 PRSS3P2 T6|TRY6 protease, serine 3 pseudogene 2 pseudo 0.336 0.212 0.492 0.026 0.251 0.091 0.114 0.020 0.081 0.114 0.021 0.154 0.021 0.224 4.401 0.039 0.030 1.848 5.926 0.710 0.057 3.630 1179 chr4 86416158 86421187 + 0 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 22388 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 0.456 0.575 0.069 0.106 0.220 1.613 1.070 0.164 0.518 0.017 1.466 0.787 0.431 0.517 0.015 0.025 2.517 5.625 1.851 0.045 5.888 1052 chr3 5017707 5037952 + 0 NA TTS (NM_003670) TTS (NM_003670) -6183 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 2.465 1.631 3.981 2.317 3.316 1.079 3.171 1.115 3.666 1.382 0.888 4.941 2.144 4.305 1.219 1.533 1.451 2.495 1.636 3.467 2.360 1.569 735 chr19 676209 681056 + 0 NA intron (NM_005860, intron 2 of 4) AluSz|SINE|Alu 2243 NM_005860 10272 Hs.529038 NM_005860 ENSG00000070404 FSTL3 FLRG|FSRP follistatin like 3 protein-coding 1.200 2.196 1.270 1.735 2.860 0.485 3.261 0.577 2.778 1.940 0.521 3.322 2.827 3.466 1.403 0.823 0.449 4.766 0.602 3.521 0.662 0.463 404 chr14 23621222 23655420 + 0 NA intron (NM_012244, intron 1 of 10) AluJb|SINE|Alu -13654 NM_001267036 23428 Hs.596643 NM_012244 ENSG00000092068 SLC7A8 LAT2|LPI-PC1 solute carrier family 7 member 8 protein-coding 0.153 0.098 0.121 0.357 2.918 0.108 0.195 0.075 0.165 1.448 0.744 2.644 5.964 0.054 0.083 0.139 0.199 0.024 0.006 0.173 0.157 0.036 516 chr15 99407606 99425465 + 0 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 88880 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 1.126 0.895 0.656 0.162 5.140 2.229 1.055 0.352 1.263 1.106 0.758 2.567 2.421 1.054 0.828 0.242 0.352 2.622 0.016 1.863 0.090 0.345 1493 chr8 72740327 72759481 + 0 NA Intergenic L1MA4|LINE|L1 -5454 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 0.478 0.123 0.079 0.290 0.366 0.065 0.304 1.438 2.054 2.284 1.335 0.520 13.718 0.186 0.104 0.452 0.499 0.057 0.233 0.232 0.124 0.060 1551 chr9 14309432 14324302 + 0 NA intron (NM_001190738, intron 1 of 8) intron (NM_001190738, intron 1 of 8) -2822 NM_001190737 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 4.676 1.357 0.738 1.028 4.388 0.107 0.087 1.207 5.787 1.534 1.275 3.235 5.458 2.010 1.768 1.440 1.092 2.252 0.685 2.190 0.400 0.762 974 chr20 49375574 49381373 + 0 NA Intergenic Intergenic 30392 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 5.749 1.020 4.643 0.092 1.451 1.084 6.233 1.096 3.758 1.303 0.773 4.548 6.268 2.101 1.865 0.080 0.166 4.100 6.721 2.745 0.041 7.199 1271 chr5 172275886 172300188 + 0 NA intron (NM_001031711, intron 1 of 9) L2a|LINE|L2 26814 NM_001031711 57222 Hs.509163 NM_020462 ENSG00000113719 ERGIC1 ERGIC-32|ERGIC32|NET24 endoplasmic reticulum-golgi intermediate compartment 1 protein-coding 0.501 0.840 1.177 0.321 0.714 1.093 2.236 0.134 0.360 0.267 0.079 0.628 0.197 0.793 0.559 0.080 0.120 5.080 0.067 2.016 0.161 0.897 702 chr17 73839318 73852902 + 0 NA intron (NM_001330499, intron 2 of 6) intron (NM_001330499, intron 2 of 6) -5312 NM_199242 201294 Hs.41045 NM_199242 ENSG00000092929 UNC13D FHL3|HLH3|HPLH3|Munc13-4 unc-13 homolog D protein-coding 3.489 0.847 1.789 0.630 3.637 0.980 2.011 0.535 1.368 1.716 0.757 4.702 3.140 4.017 1.049 0.610 0.391 2.946 1.290 1.912 0.179 1.975 344 chr12 56508734 56514091 + 0 NA promoter-TSS (NM_001303124) promoter-TSS (NM_001303124) -592 NM_001303124 84872 Hs.632706 NM_032786 ENSG00000135482 ZC3H10 ZC3HDC10 zinc finger CCCH-type containing 10 protein-coding 4.343 1.893 3.048 3.049 7.187 3.396 3.759 2.057 11.124 3.890 1.389 7.774 9.091 2.494 2.825 1.874 1.621 3.358 2.024 3.232 2.210 3.406 1613 chr9 139009184 139012640 + 0 NA promoter-TSS (NM_001256526) promoter-TSS (NM_001256526) -181 NM_152833 90120 Hs.287411 NM_152833 ENSG00000238227 C9orf69 - chromosome 9 open reading frame 69 protein-coding 3.613 2.364 12.281 3.089 7.909 3.288 5.511 1.869 5.485 8.487 1.534 8.066 6.068 3.476 2.165 3.918 1.787 3.080 2.948 2.309 1.502 0.898 636 chr17 38464872 38491849 + 0 NA intron (NM_001145301, intron 1 of 8) intron (NM_001145301, intron 1 of 8) 3887 NM_001145301 5914 Hs.654583 NM_000964 ENSG00000131759 RARA NR1B1|RAR retinoic acid receptor alpha protein-coding 5.398 0.565 1.210 0.316 1.250 1.072 2.766 0.308 0.925 1.137 0.704 2.822 0.877 1.128 1.030 0.259 0.310 1.820 1.904 0.909 0.141 1.158 1406 chr7 30633103 30637369 + 0 NA intron (NM_002047, intron 1 of 16) intron (NM_002047, intron 1 of 16) 727 NM_002047 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 6.000 1.810 4.643 8.677 8.966 3.778 10.134 1.786 8.777 5.311 2.945 7.328 8.833 8.157 2.526 2.307 1.680 3.115 2.030 2.998 2.701 2.095 1104 chr3 146260486 146263433 + 0 NA intron (NM_021105, intron 1 of 8) intron (NM_021105, intron 1 of 8) 669 NM_021105 5359 Hs.130759 NM_021105 ENSG00000188313 PLSCR1 MMTRA1B phospholipid scramblase 1 protein-coding 1.039 0.966 8.297 0.943 7.255 1.291 3.909 1.404 11.141 0.882 2.271 4.349 1.687 1.883 2.534 0.748 0.897 2.939 1.736 1.135 1.145 2.631 561 chr16 69597391 69604886 + 0 NA intron (NM_173215, intron 1 of 13) intron (NM_173215, intron 1 of 13) 1269 NM_001113178 10725 Hs.371987 NM_006599 ENSG00000102908 NFAT5 NF-AT5|NFATL1|NFATZ|OREBP|TONEBP nuclear factor of activated T-cells 5 protein-coding 2.688 1.684 8.890 2.682 9.371 3.775 3.689 0.963 3.858 4.682 1.075 5.387 4.233 3.410 1.408 0.778 0.584 2.251 2.961 2.433 1.695 2.305 1133 chr3 179279733 179282222 + 0 NA intron (NM_178042, intron 1 of 13) CpG 309 NM_178042 86 Hs.435326 NM_004301 ENSG00000136518 ACTL6A ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K actin like 6A protein-coding 1.753 1.193 2.691 4.120 9.451 0.846 3.235 1.707 7.177 13.724 3.250 6.756 11.121 1.799 1.423 3.269 2.528 1.729 1.937 1.388 2.343 1.214 209 chr11 702502 708914 + 0 NA promoter-TSS (NM_022772) promoter-TSS (NM_022772) -412 NM_022772 64787 Hs.55016 NM_022772 ENSG00000177106 EPS8L2 EPS8R2 EPS8 like 2 protein-coding 5.803 1.651 2.310 0.167 1.458 3.628 3.248 0.447 1.628 3.260 0.403 9.052 2.248 4.077 2.048 0.352 0.264 6.203 0.989 2.617 0.036 2.030 1118 chr3 169378328 169387232 + 0 NA Intergenic Intergenic -1217 NM_004991 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 0.882 0.403 0.360 0.384 2.540 0.247 1.805 0.317 1.948 0.729 0.492 8.350 7.501 0.234 0.446 0.429 0.298 2.334 0.851 0.175 0.129 0.352 1575 chr9 100982742 100995993 + 0 NA intron (NM_018421, intron 5 of 12) intron (NM_018421, intron 5 of 12) 2132 NR_106913 102465514 NR_106913 ENSG00000278412 MIR6854 hsa-mir-6854 microRNA 6854 ncRNA 0.495 1.090 0.369 0.040 2.592 0.539 2.009 1.968 6.166 0.997 1.071 1.422 0.575 0.532 0.577 0.042 0.101 4.799 0.896 3.099 0.018 0.774 357 chr12 72054224 72059396 + 0 NA promoter-TSS (NM_031435) promoter-TSS (NM_031435) -867 NM_031435 83591 Hs.245798 NM_031435 ENSG00000173451 THAP2 - THAP domain containing 2 protein-coding 2.910 2.848 2.310 2.514 7.595 2.465 2.325 1.044 4.726 3.038 1.069 4.998 7.300 3.704 1.345 1.384 1.430 2.657 1.267 4.934 0.968 1.622 1307 chr6 22743233 22770045 + 0 NA Intergenic L2c|LINE|L2 -38486 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 0.295 0.005 0.232 1.607 0.111 0.068 0.044 0.026 0.102 0.138 0.018 0.060 0.085 0.073 0.097 1.223 2.494 0.008 0.005 0.050 3.959 0.176 117 chr1 200378461 200387261 + 0 NA Intergenic AluSq|SINE|Alu -3675 NM_012482 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 2.826 0.615 0.598 0.934 2.207 0.708 2.141 1.373 5.752 1.343 0.537 2.388 1.940 1.994 1.524 0.575 0.578 2.108 1.941 0.652 0.409 6.448 455 chr14 103051235 103061599 + 0 NA Intergenic L2b|LINE|L2 -2579 NM_015156 23186 Hs.510521 NM_015156 ENSG00000089902 RCOR1 COREST|RCOR REST corepressor 1 protein-coding 1.804 0.585 2.558 1.383 5.151 2.669 1.924 0.606 2.956 2.902 0.698 4.440 4.334 0.918 1.243 1.331 0.855 2.212 1.344 0.908 1.092 1.305 600 chr17 8054158 8067469 + 0 NA Intergenic AluY|SINE|Alu -5060 NM_002616 5187 Hs.445534 NM_002616 ENSG00000179094 PER1 PER|RIGUI|hPER period circadian clock 1 protein-coding 1.162 0.657 1.461 1.045 2.558 1.288 2.011 0.667 1.334 1.273 0.532 1.615 1.307 3.365 1.267 0.703 0.452 0.838 0.581 1.106 0.434 0.387 80 chr1 151041219 151044876 + 0 NA promoter-TSS (NM_001323913) promoter-TSS (NM_001323913) -7 NM_001323908 126626 Hs.15671 NM_144618 ENSG00000143458 GABPB2 GABPB-2 GA binding protein transcription factor beta subunit 2 protein-coding 4.717 1.320 2.370 2.361 6.318 0.701 4.601 0.921 6.625 4.442 1.162 6.112 9.888 2.895 3.310 6.246 5.104 3.422 1.409 2.346 1.409 1.706 336 chr12 52462818 52488868 + 0 NA intron (NR_120437, intron 1 of 2) intron (NR_120437, intron 1 of 2) 2363 NR_120437 26628 Hs.524431 NR_120437 ENSG00000257542 OR7E47P OR7E141 olfactory receptor family 7 subfamily E member 47 pseudogene pseudo 0.423 0.176 0.338 4.295 0.676 0.308 0.323 0.242 0.541 0.664 0.244 0.735 1.004 0.391 0.258 0.646 0.762 0.357 0.212 0.292 3.320 0.163 457 chr14 103798470 103802275 + 0 NA promoter-TSS (NM_001969) promoter-TSS (NM_001969) 33 NM_001969 1983 Hs.433702 NM_001969 ENSG00000100664 EIF5 EIF-5|EIF-5A eukaryotic translation initiation factor 5 protein-coding 5.662 1.074 7.637 5.225 10.943 5.746 5.538 1.877 7.775 8.433 1.780 12.126 12.933 3.409 4.147 3.799 2.355 4.009 3.420 1.469 4.145 1.969 1301 chr6 17702106 17707901 + 0 NA intron (NM_005124, intron 1 of 21) AluYa5|SINE|Alu -1358 NR_134616 105374952 Hs.718703 NR_134616 ENSG00000272269 LOC105374952 - uncharacterized LOC105374952 ncRNA 2.548 1.987 3.299 2.563 5.432 3.185 5.908 1.756 11.150 4.138 2.144 1.872 8.990 2.288 1.256 1.431 1.386 3.054 2.338 2.833 2.623 2.948 821 chr19 53684050 53688375 + 0 NA intron (NM_024733, intron 1 of 3) intron (NM_024733, intron 1 of 3) 10407 NM_024733 79788 Hs.745230 NM_024733 ENSG00000197497 ZNF665 ZFP160L zinc finger protein 665 protein-coding 0.046 0.132 0.079 0.441 0.039 1.069 3.171 12.352 0.192 0.018 0.057 0.071 2.325 0.434 0.037 0.029 1.909 0.010 0.026 2.666 696 chr17 70115963 70121583 + 0 NA intron (NM_000346, intron 1 of 2) CpG 1612 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box 9 protein-coding 0.476 0.464 4.976 8.133 1.438 1.092 3.258 0.691 1.688 0.947 0.829 2.442 2.704 3.648 1.576 0.952 0.555 0.896 1.633 0.525 3.686 1.357 383 chr13 43627770 43633383 + 0 NA intron (NM_013238, intron 1 of 5) L1PB1|LINE|L1 33214 NM_013238 29103 Hs.438830 NM_013238 ENSG00000120675 DNAJC15 DNAJD1|HSD18|MCJ DnaJ heat shock protein family (Hsp40) member C15 protein-coding 0.681 0.406 3.578 0.658 0.248 3.399 1.302 0.363 1.258 0.423 0.637 1.329 0.174 1.482 0.875 0.577 1.234 0.133 0.584 0.823 2.441 1.783 963 chr20 42831164 42842312 + 0 NA intron (NM_016470, intron 1 of 3) intron (NM_016470, intron 1 of 3) 2808 NM_016470 51526 Hs.75798 NM_016470 ENSG00000132823 OSER1 C20orf111|HSPC207|Osr1|Perit1|dJ1183I21.1 oxidative stress responsive serine rich 1 protein-coding 4.021 0.655 1.242 0.975 4.408 1.392 1.734 0.850 2.647 2.025 1.523 3.779 7.558 3.977 1.155 0.356 0.491 2.217 2.602 1.307 0.662 1.379 297 chr11 129143928 129170527 + 0 NA Intergenic Intergenic -88654 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 0.877 0.358 0.179 5.730 0.177 0.252 0.358 0.140 0.320 0.476 0.208 0.886 0.317 0.248 0.219 0.681 0.760 0.130 0.098 0.644 3.942 0.121 1431 chr7 74601057 74608287 + 0 NA intron (NR_002206, intron 21 of 23).2 intron (NR_002206, intron 21 of 23).2 -16870 NR_003187 654817 Hs.647047 NR_003187 ENSG00000165178 NCF1C SH3PXD1C neutrophil cytosolic factor 1C pseudogene pseudo 0.454 2.292 0.158 0.266 0.765 0.189 1.018 0.265 0.695 2.091 1.082 6.496 7.324 4.901 0.725 0.054 0.337 4.942 0.029 5.186 0.158 0.614 92 chr1 155530982 155534952 + 0 NA promoter-TSS (NM_018489) promoter-TSS (NM_018489) -643 NM_018489 55870 Hs.491060 NM_018489 ENSG00000116539 ASH1L ASH1|ASH1L1|KMT2H ASH1 like histone lysine methyltransferase protein-coding 7.331 2.108 3.216 6.690 14.166 3.059 4.796 1.892 8.093 7.967 1.950 10.532 13.392 4.189 5.200 4.299 2.984 4.280 1.842 2.546 3.692 3.245 1489 chr8 60017807 60032720 + 0 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 6504 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 0.336 0.075 0.164 0.512 10.048 0.112 0.852 0.720 1.702 1.033 0.602 0.276 0.219 1.215 0.055 0.583 0.446 0.272 0.437 0.155 0.247 0.259 1212 chr5 17216081 17260263 + 0 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 20502 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 0.297 0.482 0.147 0.186 0.722 0.853 4.430 0.857 3.279 0.840 0.235 1.540 0.373 0.721 0.714 0.704 0.624 2.390 0.011 1.188 0.065 0.860 1596 chr9 127622683 127633517 + 0 NA intron (NM_030978, intron 2 of 5) intron (NM_030978, intron 2 of 5) 3703 NM_030978 81873 Hs.132499 NM_030978 ENSG00000136950 ARPC5L ARC16-2 actin related protein 2/3 complex subunit 5 like protein-coding 2.413 1.148 1.575 2.108 6.566 2.671 3.230 1.170 5.094 5.707 1.528 4.864 6.220 1.833 1.676 1.622 1.373 2.989 1.454 1.528 1.042 1.071 980 chr20 51976951 51988472 + 0 NA intron (NM_001193421, intron 2 of 2) intron (NM_001193421, intron 2 of 2) 180889 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 0.157 0.064 0.185 4.708 0.219 0.093 0.096 0.028 0.090 0.266 0.055 0.217 0.192 0.092 0.072 0.088 0.158 0.063 0.007 0.037 4.615 0.045 10 chr1 8457596 8485294 + 0 NA intron (NM_012102, intron 13 of 23) FLAM_A|SINE|Alu 12302 NM_001042682 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 0.368 0.529 1.178 4.996 0.493 0.313 0.603 0.131 0.413 0.502 0.050 1.126 1.086 0.778 0.641 0.737 0.716 0.671 0.110 0.931 3.668 0.402 550 chr16 52131075 52154332 + 0 NA Intergenic Intergenic 23510 NR_104655 102467079 Hs.98466 NR_104655 ENSG00000261749 LOC102467079 - uncharacterized LOC102467079 ncRNA 0.350 0.021 0.176 2.870 0.195 0.039 0.044 0.033 0.136 0.003 0.156 0.093 0.084 0.076 0.161 0.275 0.038 0.016 0.043 4.928 0.065 1477 chr8 40928675 40931959 + 0 NA Intergenic MER4E1|LTR|ERV1 -174974 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 0.033 0.750 0.151 0.163 0.410 0.071 4.943 0.484 1.777 0.676 1.119 1.209 0.700 0.107 0.866 1.353 1.735 1.651 5.106 1.743 0.123 8.554 1164 chr4 4760501 4766553 + 0 NA promoter-TSS (NR_125892) promoter-TSS (NR_125892) 40 NR_125892 101928279 Hs.586152 NR_125892 LOC101928279 - uncharacterized LOC101928279 ncRNA 0.151 0.041 0.052 1.325 0.145 0.077 0.121 0.262 0.767 0.154 0.079 0.016 0.040 0.058 0.052 3.174 3.252 0.022 0.014 0.074 1.429 0.047 1081 chr3 69912347 69918850 + 0 NA intron (NM_198177, intron 1 of 9) intron (NM_198177, intron 1 of 9) 223 NM_198177 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|MI|WS2|WS2A|bHLHe32 melanogenesis associated transcription factor protein-coding 3.010 0.077 1.546 0.049 3.536 0.826 0.714 0.194 0.825 0.101 0.024 1.380 0.086 1.168 0.601 0.024 0.056 1.262 0.821 0.171 0.106 3.657 505 chr15 83948331 83958606 + 0 NA promoter-TSS (NM_001717) promoter-TSS (NM_001717) 0 NM_001717 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 0.093 4.638 0.100 0.208 4.269 0.562 2.985 0.308 0.180 2.437 1.281 5.499 0.479 3.250 1.076 0.130 0.118 5.825 1.277 9.205 0.045 0.456 670 chr17 48269816 48300972 + 0 NA Intergenic L2b|LINE|L2 -6394 NM_000088 1277 Hs.172928 NM_000088 ENSG00000108821 COL1A1 EDSC|OI1|OI2|OI3|OI4 collagen type I alpha 1 chain protein-coding 0.205 0.751 0.803 0.150 0.431 0.229 1.550 1.829 5.403 0.506 0.159 0.527 0.408 0.545 0.979 0.142 0.124 2.047 0.441 1.624 0.066 0.609 1094 chr3 124602960 124607210 + 0 NA intron (NM_002213, intron 1 of 14) CpG 1067 NM_002213 3693 Hs.13155 NM_002213 ENSG00000082781 ITGB5 - integrin subunit beta 5 protein-coding 1.660 0.874 8.868 2.281 2.811 2.909 4.815 0.591 1.116 2.326 0.562 4.948 2.455 1.403 1.784 1.880 1.061 3.144 1.531 1.004 1.219 1.444 1569 chr9 94244758 94264106 + 0 NA Intergenic MIR|SINE|MIR -67524 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 0.143 0.090 0.123 0.072 0.219 0.057 0.341 2.151 5.585 0.409 0.100 0.205 0.158 0.159 0.049 0.040 0.025 2.198 0.054 0.178 0.019 0.102 958 chr20 35233069 35237768 + 0 NA intron (NR_026562, intron 1 of 4) intron (NR_026562, intron 1 of 4) 1281 NR_026562 55969 Hs.584985 NM_018840 ENSG00000101084 C20orf24 PNAS-11|RIP5 chromosome 20 open reading frame 24 protein-coding 5.373 0.843 3.179 3.550 4.167 1.844 4.537 0.943 3.074 4.636 1.549 6.508 14.885 2.225 2.282 0.648 0.900 1.282 2.495 1.515 1.542 1.452 419 chr14 50064375 50067050 + 0 NA non-coding (NR_037793, exon 1 of 5) non-coding (NR_037793, exon 1 of 5) 297 NR_037792 122769 Hs.451090 NM_152329 ENSG00000165501 LRR1 4-1BBLRR|LRR-1|PPIL5 leucine rich repeat protein 1 protein-coding 8.917 3.159 7.786 5.308 23.094 4.853 9.533 2.514 12.006 7.748 1.818 12.782 15.329 3.365 5.198 3.463 2.968 5.940 3.223 6.651 3.740 3.933 995 chr20 62328006 62331721 + 0 NA TTS (NM_001267547) TTS (NM_001267547) 1859 NM_003823 8771 Hs.434878 NM_003823 ENSG00000243509 TNFRSF6B DCR3|DJ583P15.1.1|M68|M68E|TR6 TNF receptor superfamily member 6b protein-coding 0.675 2.008 2.144 0.073 0.583 0.860 5.412 1.924 3.933 0.538 0.284 3.868 0.258 2.797 4.232 0.127 0.065 5.524 5.558 4.070 1.656 1225 chr5 68664049 68666736 + 0 NA promoter-TSS (NM_133342) promoter-TSS (NM_133342) 17 NM_016283 102157402 Hs.653163 NM_016283 ENSG00000085231 AK6 AD-004|CGI-137|CINAP|CIP|hCINAP adenylate kinase 6 protein-coding 2.947 1.837 6.484 4.308 7.332 4.793 7.515 1.347 8.259 5.097 1.393 5.689 9.346 5.719 5.151 1.838 1.984 5.546 3.329 4.097 2.900 1.480 837 chr2 28598038 28604313 + 0 NA Intergenic Intergenic -14604 NM_005253 2355 Hs.220971 NM_005253 ENSG00000075426 FOSL2 FRA2 FOS like 2, AP-1 transcription factor subunit protein-coding 0.339 0.039 0.148 0.162 3.835 0.144 0.440 0.233 0.088 2.694 3.432 4.931 3.964 0.122 0.032 0.210 0.168 0.022 0.027 0.053 0.036 0.090 290 chr11 120195443 120216011 + 0 NA Intergenic Intergenic -1891 NM_015313 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 1.303 0.752 1.197 1.081 2.986 1.532 2.967 0.635 2.891 1.015 0.511 2.180 2.340 1.409 1.014 0.785 0.788 1.966 0.575 1.339 0.738 0.728 625 chr17 36056422 36063051 + 0 NA intron (NM_001165923, intron 7 of 8) intron (NM_001165923, intron 7 of 8) 45333 NM_001304286 6928 Hs.191144 NM_000458 ENSG00000275410 HNF1B FJHN|HNF-1-beta|HNF-1B|HNF1beta|HNF2|HPC11|LF-B3|LFB3|MODY5|TCF-2|TCF2|VHNF1 HNF1 homeobox B protein-coding 0.292 0.241 0.335 0.210 0.156 0.115 0.475 0.061 0.073 0.550 0.275 0.890 0.207 0.061 0.221 0.048 0.110 0.476 0.044 0.290 0.035 6.198 592 chr17 7386276 7388901 + 0 NA promoter-TSS (NM_020899) promoter-TSS (NM_020899) -20 NM_020899 57659 Hs.35096 NM_020899 ENSG00000174282 ZBTB4 KAISO-L1|ZNF903 zinc finger and BTB domain containing 4 protein-coding 5.009 2.105 4.954 5.507 9.672 4.665 5.182 2.664 12.987 7.110 1.753 6.842 3.987 5.083 6.017 1.687 1.730 3.559 3.275 4.375 3.988 1.768 149 chr1 245023772 245034543 + 0 NA Intergenic Intergenic -1330 NM_031844 3192 Hs.106212 NM_004501 ENSG00000153187 HNRNPU HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U heterogeneous nuclear ribonucleoprotein U protein-coding 2.640 1.058 1.677 3.110 6.943 1.639 5.263 0.930 3.091 3.301 0.838 4.450 5.688 2.264 2.795 1.706 1.161 1.870 0.834 1.255 2.116 3.131 712 chr17 79669278 79680961 + 0 NA TTS (NM_002949) TTS (NM_002949) -4147 NM_012140 1468 Hs.548187 NM_012140 ENSG00000183048 SLC25A10 DIC solute carrier family 25 member 10 protein-coding 3.254 0.785 2.772 2.995 5.669 1.085 2.989 0.539 1.597 3.256 1.099 4.960 4.589 2.272 1.563 3.089 2.151 1.146 1.066 0.782 1.754 0.896 210 chr11 736755 750026 + 0 NA Intergenic AluY|SINE|Alu -4042 NM_006755 6888 Hs.438678 NM_006755 ENSG00000177156 TALDO1 TAL|TAL-H|TALDOR|TALH transaldolase 1 protein-coding 3.302 0.233 1.468 1.801 0.953 1.738 1.666 0.316 0.987 3.594 0.562 3.527 3.239 0.914 0.590 0.828 0.706 0.484 0.798 0.234 0.695 0.654 406 chr14 32542953 32557678 + 0 NA intron (NM_001173, intron 1 of 6) L2c|LINE|L2 3820 NM_001030055 394 Hs.592313 NM_001173 ENSG00000100852 ARHGAP5 GFI2|RhoGAP5|p190-B|p190BRhoGAP Rho GTPase activating protein 5 protein-coding 1.982 0.987 2.713 0.897 4.837 1.113 4.345 0.572 2.434 2.156 0.734 3.099 4.447 0.592 0.953 0.500 0.503 1.376 1.413 2.123 0.635 1.155 173 chr10 32026057 32050373 + 0 NA Intergenic Intergenic 159639 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 0.307 0.214 0.289 0.295 0.383 0.347 1.824 1.899 6.333 0.282 0.077 0.525 0.501 0.499 0.227 0.107 0.160 0.859 0.351 0.436 0.157 0.290 530 chr16 3988084 4013346 + 0 NA promoter-TSS (NR_120311) promoter-TSS (NR_120311) -270 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 0.693 0.536 0.537 0.219 0.899 0.436 5.975 1.665 4.298 0.272 0.186 0.409 0.320 1.412 0.467 0.092 0.162 1.782 0.045 1.121 0.176 0.359 66 chr1 94365410 94376301 + 0 NA intron (NM_002061, intron 1 of 6) intron (NM_002061, intron 1 of 6) 4299 NM_002061 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 1.007 0.182 0.515 0.923 0.798 0.934 1.468 0.305 0.573 1.100 0.473 0.980 16.695 0.780 0.363 0.598 0.388 0.411 0.477 0.184 0.446 0.310 19 chr1 16169321 16180184 + 0 NA promoter-TSS (NR_024279) promoter-TSS (NR_024279) -110 NR_024279 729614 Hs.119298 NR_024279 ENSG00000179743 FLJ37453 - uncharacterized LOC729614 ncRNA 1.614 1.151 1.175 6.676 4.169 1.267 1.891 0.589 2.178 3.628 0.780 2.796 5.161 2.306 1.025 1.475 1.254 1.350 1.080 1.420 3.885 0.755 1030 chr22 29456764 29513193 + 0 NA intron (NM_032045, intron 1 of 9) L2a|LINE|L2 15912 NM_001039570 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding 0.276 0.064 0.135 3.642 0.560 0.102 0.295 0.039 0.080 0.595 0.210 0.340 0.476 0.127 0.118 0.952 1.072 0.016 0.011 0.096 3.222 0.040 365 chr12 104607832 104619324 + 0 NA intron (NM_001093771, intron 1 of 16) intron (NM_001093771, intron 1 of 16) 4021 NM_001093771 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 1.756 1.759 1.816 0.930 4.644 3.060 1.974 1.072 3.836 2.526 2.966 1.959 8.503 1.477 0.961 0.889 1.402 4.005 2.905 4.252 1.360 2.688 763 chr19 21376906 21421194 + 0 NA Intergenic Intergenic 74237 NR_138053 170959 Hs.156256 NM_133473 ENSG00000196705 ZNF431 - zinc finger protein 431 protein-coding 0.115 0.056 0.187 0.046 0.130 0.031 0.106 0.835 5.797 0.155 0.020 0.095 0.091 0.178 0.056 0.030 0.008 0.047 0.007 0.194 0.015 0.350 470 chr15 59208974 59212720 + 0 NA intron (NR_135043, intron 1 of 18) intron (NR_135043, intron 1 of 18) 15028 NM_024755 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 0.287 2.974 0.128 0.446 0.571 0.120 0.073 0.022 0.066 0.230 0.043 0.314 0.404 0.338 0.084 0.041 0.063 0.416 9.972 0.092 0.075 1524 chr8 143749995 143761090 + 0 NA intron (NR_033343, intron 1 of 2) LTR8A|LTR|ERV1 3816 NR_033343 8000 Hs.652235 NM_005672 ENSG00000167653 PSCA PRO232 prostate stem cell antigen protein-coding 1.244 0.908 0.793 0.694 2.041 0.763 9.658 1.948 3.625 1.865 0.591 2.613 2.485 2.029 0.649 0.557 0.361 1.846 1.943 1.656 0.274 1.366 793 chr19 42613584 42619577 + 0 NA intron (NM_001207025, intron 5 of 13) AluSz|SINE|Alu 20045 NM_001207025 5452 Hs.147381 NM_002698 ENSG00000028277 POU2F2 OCT2|OTF2|Oct-2 POU class 2 homeobox 2 protein-coding 0.286 3.657 0.262 0.097 0.120 0.266 5.678 1.139 1.776 0.553 0.068 0.246 0.216 0.612 0.468 0.014 0.020 3.146 0.503 8.268 0.038 1.100 1287 chr6 1310129 1336707 + 0 NA Intergenic AluJr|SINE|Alu 10743 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 0.388 0.121 1.335 1.768 1.958 0.192 1.104 0.207 0.450 0.804 0.170 1.479 3.143 0.207 0.518 0.962 0.744 0.549 2.586 0.365 2.353 3.066 1205 chr5 891132 894531 + 0 NA promoter-TSS (NM_001166260) promoter-TSS (NM_001166260) 108 NM_023924 65980 Hs.449278 NM_023924 ENSG00000028310 BRD9 LAVS3040|PRO9856 bromodomain containing 9 protein-coding 3.716 1.056 3.224 3.240 6.785 2.264 17.420 2.086 7.140 7.681 3.044 12.137 7.241 3.197 3.194 6.183 4.017 3.710 3.474 0.780 1.938 1.080 654 chr17 43501057 43510960 + 0 NA TTS (NM_174919) TTS (NM_174919) 1655 NM_001282290 201176 Hs.205326 NM_174919 ENSG00000159314 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 1.298 0.463 1.650 0.831 1.504 0.550 1.942 0.103 0.264 2.150 0.699 4.410 3.289 1.414 0.592 0.766 0.744 0.542 1.256 0.551 0.290 1.327 570 chr16 84756966 84770830 + 0 NA intron (NM_001272075, intron 2 of 14) intron (NM_001272075, intron 2 of 14) 30343 NM_005153 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 3.867 1.043 1.779 0.472 3.231 2.126 2.221 0.402 2.455 1.469 0.881 2.387 8.339 1.051 0.826 0.185 0.314 1.228 3.629 2.842 0.447 2.166 252 chr11 62642415 62655074 + 0 NA promoter-TSS (NR_037193) promoter-TSS (NR_037193) 400 NM_001013251 6520 Hs.502769 NM_002394 ENSG00000168003 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 member 2 protein-coding 2.715 1.027 1.284 4.905 4.900 1.958 2.913 0.597 2.304 2.482 1.707 4.434 9.936 2.863 1.597 1.509 1.281 1.875 1.663 2.100 2.578 1.648 1159 chr3 195985349 196016576 + 0 NA intron (NM_001312673, intron 1 of 8) MER52A|LTR|ERV1 13661 NM_005017 5130 Hs.135997 NM_005017 ENSG00000161217 PCYT1A CCTA|CT|CTA|CTPCT|PCYT1|SMDCRD phosphate cytidylyltransferase 1, choline, alpha protein-coding 0.619 0.363 0.576 1.848 2.222 0.508 0.932 0.378 1.100 3.709 1.482 2.292 nan 0.610 0.441 0.318 0.338 0.387 0.790 0.652 1.114 0.700 883 chr2 159974993 160018525 + 0 NA intron (NM_001145909, intron 5 of 26) intron (NM_001145909, intron 5 of 26) -46587 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 0.383 0.566 0.200 2.776 1.405 0.481 1.842 0.255 0.480 0.665 0.225 1.244 1.534 0.179 0.424 0.727 0.893 0.318 0.080 1.385 2.145 0.689 156 chr10 2229553 2270770 + 0 NA Intergenic MER50B|LTR|ERV1 107107 NR_038884 399708 Hs.521270 NR_038884 LINC00701 - long intergenic non-protein coding RNA 701 ncRNA 0.196 0.006 0.131 0.039 9.104 0.053 0.027 0.042 0.092 0.153 0.017 0.500 0.079 0.059 0.075 0.015 0.006 0.020 0.008 0.054 0.011 0.128 283 chr11 111297177 111315060 + 0 NA Intergenic Intergenic -17207 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 0.796 0.042 0.205 1.884 0.239 0.072 0.078 0.031 0.077 0.287 0.113 0.455 0.244 0.086 0.145 1.270 1.188 0.027 0.005 0.087 3.235 0.058 655 chr17 43535272 43548287 + 0 NA intron (NR_027782, intron 4 of 10) intron (NR_027782, intron 4 of 10) 11022 NR_036199 100423004 NR_036199 ENSG00000225190 MIR4315-1 - microRNA 4315-1 ncRNA 1.183 0.067 0.377 0.148 0.828 0.181 0.810 0.036 0.053 1.180 0.823 2.328 7.392 0.249 0.817 0.312 0.347 0.942 0.927 0.123 0.062 1.117 59 chr1 68213565 68220101 + 0 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 65973 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 1.890 0.682 0.873 0.090 2.928 0.745 3.074 0.922 1.347 1.449 0.272 2.720 1.265 1.390 1.215 0.514 0.838 4.144 1.745 1.287 0.069 4.637 421 chr14 50327568 50336246 + 0 NA Intergenic L2a|LINE|L2 -11986 NM_001301732 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 2.351 0.528 3.873 1.134 9.451 1.357 2.461 1.063 4.847 2.733 0.489 2.869 5.389 0.976 1.223 0.528 0.374 1.750 0.533 0.526 0.584 1.633 1367 chr6 135544571 135558708 + 0 NA Intergenic AluSx|SINE|Alu -8659 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 0.189 0.061 0.128 5.257 0.163 0.098 0.099 0.011 0.048 0.136 0.011 0.139 0.108 0.054 0.110 0.043 0.103 0.010 0.009 0.181 2.949 0.034 271 chr11 65660530 65688641 + 0 NA Intergenic L1ME3|LINE|L1 -6588 NM_005438 8061 Hs.283565 NM_005438 ENSG00000175592 FOSL1 FRA|FRA1|fra-1 FOS like 1, AP-1 transcription factor subunit protein-coding 1.268 2.199 2.968 0.529 2.186 2.807 7.399 2.246 6.562 2.005 0.748 3.616 2.146 1.698 3.492 0.475 0.293 8.838 6.942 4.233 0.159 8.012 1226 chr5 71523342 71548619 + 0 NA intron (NM_015084, intron 4 of 10) intron (NM_015084, intron 4 of 10) 60525 NM_001324255 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 0.235 0.142 0.562 0.262 0.309 0.196 0.721 0.178 0.495 0.562 0.333 0.783 4.352 0.463 0.260 0.385 0.633 0.653 0.677 0.313 0.309 0.109 1256 chr5 142196510 142226311 + 0 NA intron (NM_015071, intron 1 of 22) intron (NM_015071, intron 1 of 22) 37065 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 1.768 0.141 2.019 0.182 0.258 0.559 1.474 0.147 0.270 0.256 0.062 0.639 1.821 0.293 0.372 0.124 0.194 1.493 0.856 0.389 0.167 1.331 1070 chr3 49054980 49060446 + 0 NA promoter-TSS (NR_029948) promoter-TSS (NR_029948) -46 NR_029948 494337 NR_029948 ENSG00000199032 MIR425 MIRN425|hsa-mir-425|mir-425 microRNA 425 ncRNA 3.191 1.608 5.400 1.858 9.000 2.162 4.558 1.680 6.627 3.380 1.182 7.204 6.333 5.287 2.494 2.399 1.612 2.398 1.313 2.150 1.227 3.203 1024 chr22 19877597 19881279 + 0 NA intron (NM_006440, intron 11 of 17) intron (NM_006440, intron 11 of 17) -36976 NM_053004 54584 Hs.105642 NM_053004 ENSG00000185838 GNB1L DGCRK3|FKSG1|GY2|WDR14|WDVCF G protein subunit beta 1 like protein-coding 0.119 0.504 7.385 0.290 3.191 0.427 0.126 0.087 0.259 0.958 1.582 1.193 0.251 0.153 0.096 0.230 0.242 0.704 0.879 0.092 491 chr15 72005109 72037434 + 0 NA intron (NM_001286429, intron 3 of 11) intron (NM_001286429, intron 3 of 11) -37393 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 0.131 0.537 0.181 6.441 0.231 0.106 0.103 0.054 0.102 0.192 0.064 0.234 0.233 0.098 0.116 0.149 0.196 0.065 0.035 1.263 4.716 0.061 864 chr2 101507152 101514271 + 0 NA intron (NM_002518, intron 1 of 20) intron (NM_002518, intron 1 of 20) 74098 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 0.293 0.035 0.424 1.273 0.317 3.958 1.066 0.132 0.164 0.325 0.046 0.424 0.319 0.147 0.540 0.785 1.017 0.390 0.194 0.126 0.355 0.368 1016 chr21 40167983 40182402 + 0 NA Intergenic Intergenic -2039 NM_001256295 2114 Hs.644231 NM_005239 ENSG00000157557 ETS2 ETS2IT1 ETS proto-oncogene 2, transcription factor protein-coding 2.013 0.627 0.873 0.415 2.622 0.501 3.003 0.957 2.687 1.537 0.329 4.348 1.171 1.437 0.701 0.408 0.328 0.911 0.583 0.856 0.119 0.858 219 chr11 10877367 10881724 + 0 NA promoter-TSS (NM_021211) promoter-TSS (NM_021211) 75 NM_001143667 58486 Hs.655066 NM_021211 ENSG00000236287 ZBED5 Buster1 zinc finger BED-type containing 5 protein-coding 4.162 2.467 7.640 4.456 8.609 2.619 4.906 1.621 8.214 8.354 1.260 11.138 8.723 4.963 2.512 2.216 1.680 4.748 2.632 3.977 3.242 2.378 13 chr1 8931699 8942254 + 0 NA intron (NM_001428, intron 1 of 11) AluSx|SINE|Alu -1918 NR_038351 100505975 Hs.429843 NR_038351 ENSG00000230679 ENO1-AS1 - ENO1 antisense RNA 1 ncRNA 3.300 2.329 3.041 2.938 5.106 3.478 2.763 1.471 8.851 4.803 0.980 6.411 6.040 3.115 1.953 1.864 1.352 6.089 3.794 4.165 2.476 3.425 1170 chr4 38309571 38325769 + 0 NA Intergenic MLT1B|LTR|ERVL-MaLR 196095 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 0.973 0.214 0.583 0.447 1.760 0.221 2.422 0.902 3.611 0.680 0.589 1.351 0.874 0.534 0.460 0.294 0.405 0.942 0.339 0.535 0.792 0.998 799 chr19 45219695 45230308 + 0 NA Intergenic AluSq2|SINE|Alu 22580 NM_001039213 388551 Hs.456381 NM_001039213 ENSG00000213892 CEACAM16 CEAL2|DFNA4B carcinoembryonic antigen related cell adhesion molecule 16 protein-coding 1.909 0.233 0.603 0.113 0.655 3.920 8.325 0.548 0.649 0.392 0.370 0.382 1.063 0.374 0.334 0.029 0.099 0.837 1.182 0.648 0.083 0.473 105 chr1 164528078 164534288 + 0 NA intron (NM_001204963, intron 1 of 8) intron (NM_001204963, intron 1 of 8) 2586 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 1.565 1.834 1.919 0.276 5.509 2.664 0.637 0.247 1.315 0.824 0.205 4.046 5.866 0.272 0.954 1.288 2.321 1.192 0.142 5.252 0.073 0.833 1514 chr8 124277503 124288101 + 0 NA intron (NR_037873, intron 1 of 3) AluJr|SINE|Alu 3925 NM_001204180 100533106 Hs.707401 NM_001204180 ENSG00000259305 ZHX1-C8orf76 - ZHX1-C8orf76 readthrough protein-coding 0.956 0.456 0.703 1.636 7.310 1.076 3.692 0.700 3.102 2.119 0.417 2.941 3.998 0.509 0.874 0.745 0.662 0.480 0.404 0.463 0.729 0.426 925 chr2 235330393 235362428 + 0 NA Intergenic Intergenic 59283 NM_005737 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 0.231 0.267 0.174 6.726 0.421 1.238 0.699 0.342 0.747 0.215 0.626 0.671 0.469 0.266 0.183 1.433 1.731 0.818 0.449 0.749 7.309 0.529 840 chr2 33141215 33141734 + 0 NA intron (NR_027099, intron 5 of 5) (G)n|Simple_repeat|Simple_repeat -10720 NR_027097 100271832 Hs.743603 NR_027097 LOC100271832 - uncharacterized LOC100271832 ncRNA 0.200 0.074 0.313 0.182 0.604 0.134 0.180 0.774 1.440 0.112 0.173 3.257 1.637 1.174 1.363 1.485 0.784 0.909 597 chr17 7736959 7749096 + 0 NA promoter-TSS (NM_001080424) promoter-TSS (NM_001080424) -208 NM_001080424 23135 Hs.223678 NM_001080424 ENSG00000132510 KDM6B JMJD3 lysine demethylase 6B protein-coding 2.662 1.685 2.632 2.451 4.764 1.007 2.738 1.581 5.169 3.242 1.511 4.043 3.159 2.872 2.649 1.874 1.267 1.423 2.700 2.272 1.188 1.023 390 chr13 74247476 74282609 + 0 NA 3' UTR (NM_007249, exon 8 of 8) 3' UTR (NM_007249, exon 8 of 8) 126661 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 0.649 0.025 0.127 0.359 1.326 0.039 0.066 0.029 0.127 0.965 0.368 1.886 5.585 0.076 0.158 0.115 0.258 0.060 0.013 0.079 0.513 0.032 111 chr1 172852010 172889791 + 0 NA Intergenic Intergenic 149203 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL tumor necrosis factor superfamily member 18 protein-coding 0.805 1.357 0.175 0.133 2.011 0.158 0.603 0.696 1.855 0.515 0.297 0.772 0.682 0.247 0.338 0.072 0.070 3.251 0.542 3.700 0.112 4.833 1515 chr8 124680264 124707140 + 0 NA intron (NM_004306, intron 10 of 10) MIR|SINE|MIR -28512 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 0.354 0.539 0.177 0.201 0.314 0.077 9.876 1.270 2.816 0.454 0.156 0.908 0.791 0.714 0.795 0.082 0.121 1.620 0.739 1.399 0.133 1.848 1042 chr22 42993909 43012822 + 0 NA intron (NR_103820, intron 1 of 8) SVA_B|Other|Other 7603 NR_103820 84271 Hs.505802 NM_032311 ENSG00000100227 POLDIP3 PDIP46|SKAR DNA polymerase delta interacting protein 3 protein-coding 1.065 0.183 0.774 0.904 1.384 0.464 1.298 0.264 1.540 1.004 0.276 1.941 4.528 0.753 0.614 0.434 0.327 0.566 0.686 0.335 0.606 0.393 1411 chr7 55027164 55037369 + 0 NA Intergenic MLT1A0|LTR|ERVL-MaLR -54448 NM_001346898 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 0.303 0.121 0.173 0.063 1.455 0.162 0.371 0.061 0.074 0.875 3.529 2.418 2.208 0.343 0.205 0.031 0.499 0.037 0.267 0.056 1.533 38 chr1 33281295 33284799 + 0 NA promoter-TSS (NM_022753) promoter-TSS (NM_022753) 4 NM_001256121 64766 Hs.440880 NM_022753 ENSG00000116497 S100PBP S100PBPR S100P binding protein protein-coding 5.784 1.979 2.741 7.070 9.716 4.099 6.240 1.687 8.324 6.283 2.113 6.642 9.444 5.098 4.250 3.302 2.320 5.462 3.576 3.076 3.812 2.857 408 chr14 35014437 35027027 + 0 NA Intergenic Intergenic -11789 NM_018453 55837 Hs.433269 NM_018453 ENSG00000129518 EAPP BM036|C14orf11 E2F associated phosphoprotein protein-coding 4.110 0.689 1.510 1.062 6.411 2.248 2.363 0.841 2.695 2.954 0.688 3.347 4.549 0.669 1.354 1.159 0.989 1.023 2.566 1.174 0.725 0.682 1480 chr8 48422485 48429034 + 0 NA intron (NR_104581, intron 6 of 16) intron (NR_104581, intron 6 of 16) 224967 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 0.910 1.607 0.888 0.212 1.668 2.430 0.906 2.537 12.074 1.148 0.562 1.283 2.517 1.196 1.162 0.142 0.629 0.766 2.814 3.429 1.024 2.248 196 chr10 103872116 103881298 + 0 NA intron (NM_001113407, intron 1 of 10) intron (NM_001113407, intron 1 of 10) -1984 NM_003893 8861 Hs.454418 NM_003893 ENSG00000198728 LDB1 CLIM-2|CLIM2|LDB-1|NLI LIM domain binding 1 protein-coding 1.385 0.661 1.073 1.323 3.079 2.042 1.846 0.857 3.580 1.498 1.244 6.177 5.758 2.845 1.550 0.948 0.976 1.367 0.219 0.890 0.514 0.737 945 chr20 30171533 30201918 + 0 NA Intergenic AluJb|SINE|Alu -6361 NM_181353 3397 Hs.504609 NM_002165 ENSG00000125968 ID1 ID|bHLHb24 inhibitor of DNA binding 1, HLH protein protein-coding 3.846 0.766 1.992 3.203 7.675 7.114 2.499 0.826 2.131 2.605 1.561 8.388 9.364 1.539 1.498 1.478 1.243 3.167 1.198 1.452 2.298 0.365 242 chr11 47524340 47552594 + 0 NA intron (NM_001330272, intron 1 of 15) intron (NM_001330272, intron 1 of 15) 7073 NM_001172639 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP, Elav-like family member 1 protein-coding 0.432 0.785 0.247 0.878 3.011 0.597 0.676 0.370 2.064 0.642 0.057 0.594 0.456 1.177 0.236 0.075 0.069 0.962 0.294 2.036 0.485 0.645 1169 chr4 37640487 37691693 + 0 NA intron (NM_001085400, intron 1 of 6) intron (NM_001085400, intron 1 of 6) 21909 NM_001085399 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 0.733 0.160 0.126 3.479 0.351 0.279 1.033 0.074 0.390 0.340 0.106 0.674 0.172 0.252 0.524 1.405 1.613 0.510 0.050 0.274 4.205 0.339 559 chr16 68525108 68527688 + 0 NA Intergenic Intergenic -43989 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 0.299 4.030 0.168 0.249 0.194 0.057 0.074 0.094 0.295 0.719 0.164 0.729 0.230 0.138 0.066 0.030 0.045 0.514 0.585 6.520 0.129 0.109 1588 chr9 118994132 119002649 + 0 NA intron (NM_002581, intron 7 of 21) intron (NM_002581, intron 7 of 21) 82319 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 0.206 1.743 0.157 0.038 0.095 0.589 0.114 1.877 4.241 0.186 0.057 0.089 0.107 0.393 0.049 0.036 0.043 0.709 0.005 4.521 0.013 0.034 32 chr1 27862736 27871945 + 0 NA intron (NM_001029882, intron 6 of 6) intron (NM_001029882, intron 6 of 6) -50642 NM_001201404 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WAS protein family member 2 protein-coding 1.263 1.788 0.272 0.151 1.529 2.022 4.605 1.431 3.745 0.989 0.314 3.784 1.184 2.310 1.389 0.044 0.059 9.497 4.736 4.622 0.063 4.038 118 chr1 201975208 202034390 + 0 NA Intergenic AluSx1|SINE|Alu 25109 NM_001114309 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 4.411 0.211 1.079 1.058 0.858 0.244 0.517 0.163 0.227 1.182 0.413 1.950 2.691 0.212 0.991 0.596 0.657 0.365 0.529 0.356 1.177 1.648 206 chr10 135088316 135093810 + 0 NA promoter-TSS (NM_001164489) promoter-TSS (NM_001164489) -656 NM_001164489 101 Hs.501574 NM_001109 ENSG00000151651 ADAM8 CD156|CD156a|MS2 ADAM metallopeptidase domain 8 protein-coding 0.474 0.310 1.149 0.078 0.367 0.963 4.005 0.029 0.096 0.220 0.044 3.542 0.056 0.411 3.464 0.083 0.938 1.614 1.038 0.036 2.734 443 chr14 75032706 75047757 + 0 NA intron (NM_000428, intron 3 of 35) LTR33|LTR|ERVL 38803 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 0.815 1.023 2.852 0.092 2.155 0.687 1.747 0.528 1.865 4.004 1.349 4.992 1.467 0.485 1.427 0.094 0.145 4.867 2.511 2.404 0.031 1.375 959 chr20 35917434 35926930 + 0 NA intron (NM_001003897, intron 1 of 2) L1MC3|LINE|L1 4131 NM_022077 63905 Hs.6126 NM_022077 ENSG00000101363 MANBAL - mannosidase beta like protein-coding 1.534 1.129 1.493 1.514 3.831 0.578 3.236 1.099 4.528 2.904 1.235 5.417 6.326 3.044 0.941 0.361 0.223 2.537 1.136 3.177 0.747 1.144 1065 chr3 45478760 45485989 + 0 NA intron (NM_015340, intron 6 of 21) intron (NM_015340, intron 6 of 21) 52299 NM_015340 23395 Hs.526975 NM_015340 ENSG00000011376 LARS2 HLASA|LEURS|PRLTS4|mtLeuRS leucyl-tRNA synthetase 2, mitochondrial protein-coding 0.103 0.034 0.121 4.662 0.180 0.021 0.069 0.105 0.248 0.055 0.117 0.458 0.125 0.029 3.380 4.522 0.009 0.017 0.015 4.331 0.117 331 chr12 31230568 31234353 + 0 NA intron (NM_152438, intron 2 of 26) MLT1A|LTR|ERVL-MaLR -5679 NR_038927 100506660 Hs.586774 NR_038927 ENSG00000245614 DDX11-AS1 CONCR DDX11 antisense RNA 1 ncRNA 2.077 0.360 1.208 0.198 1.800 0.765 2.371 0.311 0.929 1.081 0.347 2.517 0.624 1.180 5.185 0.285 0.456 2.288 5.163 0.993 0.060 1.422 358 chr12 85673609 85692262 + 0 NA intron (NM_006982, intron 3 of 3) intron (NM_006982, intron 3 of 3) 8899 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 0.296 0.013 0.118 0.103 4.733 0.041 0.055 0.009 0.089 0.221 0.064 0.140 0.168 0.087 0.089 0.114 0.107 0.018 0.002 0.089 0.031 0.030 737 chr19 777918 803462 + 0 NA Intergenic FRAM|SINE|Alu -6702 NM_031991 5725 Hs.172550 NM_002819 ENSG00000011304 PTBP1 HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB polypyrimidine tract binding protein 1 protein-coding 0.978 0.572 1.327 1.566 4.967 2.799 1.975 0.293 1.155 1.838 0.622 2.734 1.944 1.759 0.733 0.622 0.453 2.248 0.441 0.798 0.729 0.281 580 chr16 88869229 88879777 + 0 NA intron (NM_030928, intron 9 of 9) intron (NM_030928, intron 9 of 9) 3839 NM_000485 353 Hs.28914 NM_000485 ENSG00000198931 APRT AMP|APRTD adenine phosphoribosyltransferase protein-coding 2.530 0.851 2.522 2.218 4.894 1.739 2.612 1.002 4.054 4.238 1.213 4.998 5.930 1.176 1.380 1.573 0.963 1.186 1.558 0.976 1.098 0.946 767 chr19 31839641 31842877 + 0 NA promoter-TSS (NR_138035) promoter-TSS (NR_138035) -828 NM_020856 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 0.223 1.680 3.687 0.496 4.129 0.189 4.415 3.648 10.948 1.179 1.990 1.757 5.596 0.049 1.396 0.120 0.040 1.580 0.214 84 chr1 151481450 151490129 + 0 NA intron (NM_020770, intron 1 of 20) intron (NM_020770, intron 1 of 20) 1927 NM_020770 57530 Hs.591464 NM_020770 ENSG00000143375 CGN - cingulin protein-coding 3.728 0.813 0.443 0.789 0.735 0.177 0.414 0.110 0.286 0.755 0.477 3.190 1.985 0.375 1.703 1.841 1.381 0.533 2.012 1.634 0.225 5.447 805 chr19 47103576 47106561 + 0 NA promoter-TSS (NM_001205281) promoter-TSS (NM_001205281) -258 NM_001329923 808 Hs.515487 NM_005184 ENSG00000160014 CALM3 CaM|CaMIII|HEL-S-72|PHKD|PHKD3 calmodulin 3 protein-coding 5.432 2.427 4.466 4.610 7.003 6.419 4.378 1.607 7.668 7.586 1.554 6.632 9.570 4.008 3.438 2.564 1.663 4.056 2.662 2.862 2.665 2.116 1020 chr21 45174090 45203354 + 0 NA Intergenic Intergenic 7534 NM_000100 1476 Hs.695 NM_000100 ENSG00000160213 CSTB CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD cystatin B protein-coding 0.942 0.203 0.725 0.285 1.218 0.834 1.612 0.440 1.232 1.262 0.590 2.046 2.054 3.445 0.462 0.699 0.582 0.718 0.165 0.270 0.193 1.484 437 chr14 68866551 68872971 + 0 NA intron (NM_001321809, intron 8 of 11) intron (NM_001321809, intron 8 of 11) 225743 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 0.210 2.198 0.209 0.067 0.836 0.081 0.165 0.181 0.332 0.299 0.138 0.241 0.399 0.154 0.033 0.012 0.076 0.149 0.013 6.429 0.018 0.083 194 chr10 99185000 99188961 + 0 NA promoter-TSS (NM_001317079) promoter-TSS (NM_001317079) -454 NM_001317079 5223 Hs.632918 NM_002629 ENSG00000171314 PGAM1 HEL-S-35|PGAM-B|PGAMA phosphoglycerate mutase 1 protein-coding 1.507 2.191 2.877 3.452 8.604 2.921 3.888 0.805 4.208 2.953 1.137 11.272 8.730 3.718 2.552 2.024 1.519 1.690 1.017 3.219 2.199 1.064 220 chr11 10918867 10925385 + 0 NA Intergenic Intergenic 42362 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 3.243 1.292 5.147 0.049 4.051 0.787 3.836 0.933 2.282 6.998 1.943 9.241 4.524 0.949 2.430 0.477 0.524 4.919 4.316 2.563 2.605 1312 chr6 30580715 30587415 + 0 NA intron (NM_002714, intron 2 of 19).5 intron (NM_002714, intron 2 of 19).5 1019 NM_002714 5514 Hs.106019 NM_002714 ENSG00000204569 PPP1R10 CAT53|FB19|PNUTS|PP1R10|R111|p99 protein phosphatase 1 regulatory subunit 10 protein-coding 3.316 1.586 4.579 4.443 13.950 3.436 4.959 1.754 10.402 5.177 1.545 14.602 10.892 3.001 2.636 1.337 1.501 3.711 1.762 2.782 3.407 3.900 1257 chr5 142620659 142626985 + 0 NA Intergenic Intergenic 51757 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 1.781 1.429 8.751 0.169 7.820 2.636 6.007 1.628 7.041 1.336 0.499 2.309 0.556 2.586 2.387 0.097 10.250 6.085 3.965 0.018 4.621 846 chr2 47415427 47429061 + 0 NA intron (NR_110208, intron 4 of 4) MER45C|DNA|hAT-Tip100 -18169 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CAMII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 1.705 0.763 0.207 0.235 0.241 1.099 3.850 0.210 0.631 0.311 0.089 0.471 0.490 0.835 1.315 0.057 0.079 3.009 0.219 2.355 0.126 1.918 1021 chr21 46284450 46302317 + 0 NA intron (NR_104597, intron 1 of 4) CpG 435 NM_004339 754 Hs.474010 NM_004339 ENSG00000183255 PTTG1IP C21orf1|C21orf3|PBF pituitary tumor-transforming 1 interacting protein protein-coding 0.507 1.507 1.825 0.431 0.460 1.388 4.600 0.902 3.579 0.415 0.157 1.319 0.816 1.629 0.865 0.461 0.368 3.801 0.799 3.350 0.142 0.942 31 chr1 27316280 27329142 + 0 NA intron (NM_001013642, intron 1 of 1) intron (NM_001013642, intron 1 of 1) 2516 NM_001013642 388610 Hs.355747 NM_001013642 ENSG00000253368 TRNP1 C1orf225|TNRP TMF1-regulated nuclear protein 1 protein-coding 0.200 1.800 1.210 0.375 0.437 0.157 0.574 0.830 1.533 0.485 0.111 0.516 0.483 1.311 0.439 0.497 0.425 2.799 0.706 3.266 0.054 3.749 1263 chr5 151116895 151125195 + 0 NA Intergenic AluSx|SINE|Alu 17165 NM_004045 475 Hs.125213 NM_004045 ENSG00000177556 ATOX1 ATX1|HAH1 antioxidant 1 copper chaperone protein-coding 0.129 2.694 0.609 1.454 0.539 0.337 2.479 1.484 6.857 0.763 0.166 0.463 0.468 2.471 0.216 0.176 0.201 6.302 0.089 6.150 0.402 2.462 934 chr20 2631588 2635387 + 0 NA promoter-TSS (NR_031699) promoter-TSS (NR_031699) 64 NR_031699 100302138 NR_031699 ENSG00000101361 MIR1292 MIRN1292|hsa-mir-1292|mir-1292 microRNA 1292 ncRNA 4.486 0.945 1.373 4.040 9.439 1.852 4.923 1.768 8.223 6.495 2.041 13.663 5.171 2.669 2.447 2.100 1.444 3.607 2.432 1.134 1.986 1.517 1296 chr6 14759141 14787056 + 0 NA Intergenic L1ME5|LINE|L1 -473108 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 0.637 0.018 0.208 0.497 0.289 1.000 0.126 0.175 0.159 1.478 0.541 0.186 6.175 0.111 0.119 0.824 1.037 0.087 0.031 0.091 0.441 0.168 1553 chr9 16499241 16507174 + 0 NA intron (NM_001317939, intron 4 of 6) intron (NM_001317939, intron 4 of 6) -226896 NR_073471 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 0.284 2.372 0.129 0.094 0.062 0.047 0.035 0.372 1.171 0.128 0.020 0.105 0.101 0.196 0.131 0.019 0.015 0.462 6.735 0.044 0.012 948 chr20 30790840 30797504 + 0 NA intron (NM_002657, intron 1 of 2) intron (NM_002657, intron 1 of 2) 1374 NM_002657 5326 Hs.154104 NM_002657 ENSG00000126003 PLAGL2 ZNF900 PLAG1 like zinc finger 2 protein-coding 2.935 0.892 1.414 8.538 3.910 1.373 2.200 0.877 2.341 3.920 1.719 6.703 10.527 2.737 1.271 2.125 2.585 2.069 0.637 0.856 5.630 0.382 1303 chr6 18302964 18313550 + 0 NA Intergenic AluSc|SINE|Alu -43458 NM_001134709 7913 Hs.484813 NM_003472 ENSG00000124795 DEK D6S231E DEK proto-oncogene protein-coding 0.204 0.152 0.169 0.098 1.015 0.050 0.095 1.545 6.272 0.706 0.996 0.160 0.306 0.252 0.069 0.010 0.011 1.841 0.004 0.389 2.160 572 chr16 86663731 86667422 + 0 NA Intergenic Intergenic 53461 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 0.354 0.067 8.125 0.223 0.343 0.051 0.793 0.127 0.089 0.290 0.085 0.511 0.218 0.093 0.113 0.021 4.683 0.023 0.121 0.032 0.077 968 chr20 47891763 47897322 + 0 NA promoter-TSS (NR_003604) promoter-TSS (NR_003604) -173 NR_003606 441951 Hs.356766 NR_003604 ENSG00000177410 ZFAS1 C20orf199|HSUP1|HSUP2|NCRNA00275|ZNFX1-AS1 ZNFX1 antisense RNA 1 ncRNA 6.326 2.608 4.209 2.078 8.552 1.615 5.614 1.830 9.551 4.100 2.246 12.352 9.795 4.698 3.388 1.373 0.985 5.670 2.515 4.106 1.558 3.012 675 chr17 48941757 48946745 + 0 NA promoter-TSS (NM_001243885) promoter-TSS (NM_001243885) 211 NR_038458 400604 Hs.641441 NR_038458 ENSG00000229980 TOB1-AS1 - TOB1 antisense RNA 1 ncRNA 5.219 2.085 7.258 5.349 8.802 3.112 5.495 1.316 9.260 5.549 2.278 9.077 11.047 4.663 3.227 3.102 2.283 3.543 2.613 3.151 2.785 3.373 1398 chr7 26183440 26199657 + 0 NA promoter-TSS (NM_004289) promoter-TSS (NM_004289) -299 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 0.455 1.443 2.989 0.400 0.351 0.976 5.324 0.452 0.986 0.484 0.219 1.968 0.721 1.513 1.075 0.575 0.440 2.092 2.561 3.014 0.597 2.230 226 chr11 20258700 20273886 + 0 NA Intergenic Intergenic -84423 NM_001029865 120237 Hs.558604 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 0.202 0.114 12.018 0.090 0.054 0.061 0.005 0.041 0.303 0.011 0.121 0.093 0.119 0.042 0.016 0.040 0.013 0.008 0.036 11.690 0.031 15 chr1 12652827 12658023 + 0 NA intron (NM_004753, intron 1 of 5) (CGGGG)n|Simple_repeat|Simple_repeat 984 NM_001324370 9249 Hs.289347 NM_004753 ENSG00000162496 DHRS3 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 dehydrogenase/reductase 3 protein-coding 2.432 3.058 2.751 2.633 0.354 0.206 1.328 0.420 0.281 0.299 0.170 4.149 0.339 1.200 1.448 1.691 1.359 0.892 0.869 4.485 0.689 0.144 1430 chr7 74303126 74308262 + 0 NA intron (NR_040584, intron 1 of 7) AluJo|SINE|Alu 1037 NR_040584 442582 Hs.632310 NM_001025202 STAG3L2 STAG3L1|STAG3L2P|STAG3L3 stromal antigen 3-like 2 (pseudogene) pseudo 3.231 1.085 3.271 2.064 7.220 2.593 2.847 0.843 4.552 5.149 1.393 8.505 9.933 4.593 2.088 1.622 2.114 1.848 1.644 1.471 1.231 1.543 431 chr14 64967376 64975222 + 0 NA promoter-TSS (NM_001123329) promoter-TSS (NM_001123329) 7 NM_001123329 22890 Hs.605143 NM_014950 ENSG00000126804 ZBTB1 ZNF909 zinc finger and BTB domain containing 1 protein-coding 2.718 1.568 7.737 2.837 7.183 2.314 4.713 1.398 5.155 5.738 1.115 8.459 6.129 1.880 3.100 2.407 1.619 3.085 3.677 2.698 2.037 3.155 527 chr16 2563297 2571474 + 0 NA intron (NM_001694, intron 1 of 2) intron (NM_001694, intron 1 of 2) -2961 NM_001330449 51005 Hs.740430 NM_015944 ENSG00000162066 AMDHD2 CGI-14 amidohydrolase domain containing 2 protein-coding 0.924 0.621 1.724 1.969 3.400 1.219 3.609 0.456 1.266 2.139 0.617 5.052 2.633 2.481 1.119 1.546 0.854 0.954 0.452 0.785 0.762 0.511 1145 chr3 186498917 186506948 + 0 NA TTS (NR_002587) TTS (NR_002587) 347 NR_002587 619567 NR_002587 ENSG00000238942 SNORD2 R39B|SNR39B small nucleolar RNA, C/D box 2 snoRNA 2.844 1.341 3.454 7.804 nan 1.671 3.533 1.292 6.487 10.229 1.946 9.778 17.446 1.614 2.153 1.811 1.733 2.143 2.262 1.968 4.552 3.141 382 chr13 41625070 41637325 + 0 NA Intergenic L2a|LINE|L2 -4500 NM_007187 11193 Hs.411300 NM_007187 ENSG00000120688 WBP4 FBP21 WW domain binding protein 4 protein-coding 4.759 1.021 1.497 1.477 3.023 1.208 2.611 0.394 2.321 1.440 0.822 4.271 4.475 2.207 1.455 1.008 0.946 0.843 0.986 2.093 0.874 0.950 1448 chr7 102243561 102253029 + 0 NA intron (NM_001079877, intron 4 of 19) AluSx1|SINE|Alu 8908 NM_001277335 100271927 Hs.530089 NM_001277335 ENSG00000170667 RASA4B - RAS p21 protein activator 4B protein-coding 1.767 0.249 0.215 0.305 1.935 0.427 0.372 0.215 0.374 2.494 0.706 5.744 6.592 1.366 1.023 0.386 0.551 1.303 0.646 0.729 0.133 0.419 1506 chr8 102497280 102519937 + 0 NA intron (NM_001330593, intron 1 of 15) intron (NM_001330593, intron 1 of 15) 3940 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 2.151 0.027 0.301 0.163 5.527 0.236 0.455 0.073 0.094 3.521 0.993 5.444 13.169 0.151 0.670 1.554 1.377 0.018 2.346 0.039 0.098 1.719 62 chr1 88418655 88424926 + 0 NA Intergenic Intergenic -584452 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 0.108 0.521 0.084 0.034 0.508 1.059 1.912 6.430 0.111 0.026 0.091 0.155 0.224 0.133 0.076 0.116 1.073 1.619 0.091 0.028 833 chr2 26980324 26996503 + 0 NA intron (NM_017877, intron 1 of 5) L2c|LINE|L2 1271 NM_017877 54978 Hs.1594 NM_017877 ENSG00000213699 SLC35F6 ANT2BP|C2orf18|TANGO9 solute carrier family 35 member F6 protein-coding 1.925 0.605 0.590 0.562 1.901 1.075 3.950 1.022 2.325 1.339 1.309 2.008 1.978 2.554 0.731 0.235 0.260 1.394 1.031 1.042 0.291 0.560 139 chr1 228743816 228785243 + 0 NA Intergenic CpG-2319 -2794 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 1.954 0.640 3.477 2.216 4.912 0.959 9.309 2.492 9.944 3.981 1.353 3.873 2.746 9.452 1.383 1.250 1.048 0.137 0.246 0.731 0.463 3.407 1573 chr9 100613231 100628163 + 0 NA Intergenic Intergenic 5160 NM_004473 2304 Hs.159234 NM_004473 ENSG00000178919 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 forkhead box E1 protein-coding 0.534 0.041 0.106 0.258 2.639 0.327 0.460 0.436 1.069 2.545 3.615 2.239 11.189 0.471 0.316 0.183 0.089 0.073 0.082 0.037 0.100 0.204 1472 chr8 30559580 30586552 + 0 NA intron (NM_000637, intron 1 of 12) intron (NM_000637, intron 1 of 12) 12420 NM_001195104 2936 Hs.271510 NM_000637 ENSG00000104687 GSR HEL-75|HEL-S-122m glutathione-disulfide reductase protein-coding 1.343 0.386 0.537 0.837 2.038 0.814 0.519 0.145 0.550 0.545 0.590 2.698 4.208 0.581 0.663 1.142 1.032 0.177 0.642 0.652 0.588 0.252 129 chr1 223165985 223170732 + 0 NA intron (NM_032890, intron 9 of 9) intron (NM_032890, intron 9 of 9) 148266 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 0.314 0.104 0.113 0.608 0.305 0.109 0.386 0.066 0.185 0.449 0.428 1.398 0.364 0.175 0.240 1.897 3.330 0.200 0.090 0.095 1.751 0.100 548 chr16 31879761 31893021 + 0 NA intron (NR_049749, intron 1 of 4) intron (NR_049749, intron 1 of 4) 1312 NM_001265588 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 0.700 0.551 1.426 0.736 1.950 0.280 3.844 0.467 1.298 1.355 0.380 1.733 2.033 1.302 0.384 0.189 0.266 1.140 0.298 1.054 0.516 0.992 926 chr2 235401561 235405729 + 0 NA 3' UTR (NM_001282431, exon 2 of 2) 3' UTR (NM_001282431, exon 2 of 2) 2048 NM_005737 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 0.316 0.523 3.965 7.202 5.996 5.511 4.937 0.328 1.294 1.205 2.243 4.858 4.853 2.668 2.417 3.180 2.796 0.615 2.591 0.998 6.225 0.729 1246 chr5 134361161 134376125 + 0 NA promoter-TSS (NM_001277348) promoter-TSS (NM_001277348) -327 NM_001277348 100996485 NM_001277348 C5orf66 - chromosome 5 open reading frame 66 protein-coding 1.067 0.488 2.401 2.870 5.590 1.762 1.343 0.429 1.469 1.439 1.353 4.807 1.779 1.156 0.216 1.099 0.799 0.412 0.879 0.587 2.623 0.050 859 chr2 86945753 86949889 + 0 NA exon (NM_022780, exon 1 of 9) exon (NM_022780, exon 1 of 9) 407 NM_022780 64795 Hs.75277 NM_022780 ENSG00000153561 RMND5A CTLH|GID2|GID2A|RMD5|p44CTLH required for meiotic nuclear division 5 homolog A protein-coding 3.226 0.509 6.924 4.713 6.601 1.487 4.975 1.481 4.445 4.939 1.800 4.100 7.084 3.305 2.192 3.024 2.120 1.508 0.851 0.939 1.941 0.982 1083 chr3 71176136 71181592 + 0 NA intron (NM_032682, intron 6 of 20) intron (NM_032682, intron 6 of 20) 1228 NM_001244815 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 1.629 0.136 4.299 0.705 1.800 0.721 5.616 0.056 0.464 0.407 0.395 2.092 0.959 0.127 2.706 0.567 0.729 1.416 0.031 0.122 0.571 0.087 739 chr19 1093966 1105852 + 0 NA Intergenic L1MB5|LINE|L1 -4016 NM_001039847 2879 Hs.433951 NM_002085 ENSG00000167468 GPX4 GPx-4|GSHPx-4|MCSP|PHGPx|SMDS|snGPx|snPHGPx glutathione peroxidase 4 protein-coding 2.802 1.125 2.465 1.768 3.096 2.105 5.820 0.612 2.607 2.216 0.947 3.139 7.485 2.191 1.460 0.814 0.487 3.919 1.744 2.061 0.847 1.308 1293 chr6 13394534 13415035 + 0 NA intron (NM_018988, intron 1 of 1) MIRb|SINE|MIR 3585 NM_001242630 54438 Hs.484686 NM_018988 ENSG00000145990 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 0.439 0.405 0.157 0.626 0.610 0.506 0.175 0.961 3.325 0.436 0.397 0.303 1.080 0.183 0.120 0.214 0.226 0.394 0.016 1.021 0.633 0.083 1110 chr3 156342904 156351100 + 0 NA Intergenic MER5B|DNA|hAT-Charlie -45203 NM_015508 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 0.325 0.060 0.288 0.183 0.833 0.028 0.259 0.769 1.204 0.668 2.742 1.004 0.526 0.171 0.179 0.162 0.237 1.044 0.427 0.190 0.141 4.574 876 chr2 121493078 121499997 + 0 NA Intergenic Intergenic -58330 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 0.231 0.680 0.326 0.487 3.535 4.089 0.498 0.245 0.427 1.551 1.102 3.777 4.760 1.354 0.445 1.089 0.659 1.255 0.024 1.023 0.184 662 chr17 46671948 46683858 + 0 NA non-coding (NR_033202, exon 2 of 3) non-coding (NR_033202, exon 2 of 3) 4431 NM_018952 3216 Hs.98428 NM_018952 ENSG00000108511 HOXB6 HOX2|HOX2B|HU-2|Hox-2.2 homeobox B6 protein-coding 1.036 0.052 3.027 0.291 0.629 4.835 1.183 0.152 0.254 0.693 0.256 0.205 0.584 0.258 2.732 0.356 0.265 0.774 0.278 0.037 0.174 0.048 418 chr14 45602632 45605855 + 0 NA promoter-TSS (NM_002013) promoter-TSS (NM_002013) -511 NM_002013 2287 Hs.509226 NM_002013 ENSG00000100442 FKBP3 FKBP-25|FKBP-3|FKBP25|PPIase FK506 binding protein 3 protein-coding 3.526 1.348 5.504 3.730 14.378 3.770 4.728 1.585 9.367 4.379 1.150 5.843 7.903 1.498 4.361 1.607 1.152 2.805 1.038 1.872 2.615 2.462 783 chr19 39880481 39883294 + 0 NA promoter-TSS (NR_046384) promoter-TSS (NR_046384) -52 NM_019088 54623 Hs.466714 NM_019088 ENSG00000006712 PAF1 F23149_1|PD2 PAF1 homolog, Paf1/RNA polymerase II complex component protein-coding 5.506 2.112 12.448 4.479 4.932 2.740 5.876 0.979 3.865 3.996 1.996 5.838 8.624 2.836 2.304 1.800 1.373 2.169 1.849 2.100 2.823 1.539 933 chr20 341345 363629 + 0 NA Intergenic Intergenic -8786 NM_021158 57761 Hs.516826 NM_021158 ENSG00000101255 TRIB3 C20orf97|NIPK|SINK|SKIP3|TRB3 tribbles pseudokinase 3 protein-coding 5.237 0.395 0.172 1.360 2.488 0.754 1.797 0.419 0.795 1.146 2.216 2.964 3.016 0.650 0.670 0.259 0.240 0.536 0.625 0.754 0.165 2.256 1357 chr6 106226868 106243070 + 0 NA Intergenic Intergenic -299226 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 0.218 0.008 0.067 1.624 0.199 0.109 0.114 0.029 0.068 0.403 0.256 0.393 0.742 0.082 0.102 1.078 1.941 0.037 0.010 0.055 2.970 0.094 168 chr10 18969844 18974061 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR 23639 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 0.409 2.377 0.183 0.025 0.950 0.108 0.260 0.301 0.634 0.298 0.515 0.175 0.476 0.317 0.036 0.083 2.545 0.129 7.188 0.127 2.202 135 chr1 226248800 226251802 + 0 NA promoter-TSS (NR_002315) promoter-TSS (NR_002315) -107 NM_002107 3020 Hs.533624 NM_002107 ENSG00000163041 H3F3A H3.3A|H3F3 H3 histone family member 3A protein-coding 7.437 0.761 3.926 7.383 13.806 3.949 4.647 2.035 10.432 9.055 4.193 11.674 13.599 5.017 6.979 6.007 2.790 6.176 2.091 0.668 5.990 3.800 348 chr12 57463291 57495413 + 0 NA Intergenic Intergenic -3325 NM_005967 4665 Hs.159223 NM_005967 ENSG00000166886 NAB2 MADER NGFI-A binding protein 2 protein-coding 0.672 0.466 0.758 0.383 2.478 0.965 0.921 0.149 0.667 1.616 0.467 2.414 4.228 0.968 0.655 0.496 0.342 0.827 0.570 0.669 0.337 0.702 1518 chr8 128402220 128422528 + 0 NA promoter-TSS (NR_109834) promoter-TSS (NR_109834) -270 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 (non-protein coding) ncRNA 6.415 0.055 0.266 1.164 5.996 0.187 0.192 0.020 0.055 1.288 1.657 1.682 4.800 0.177 0.153 0.096 0.161 0.083 0.025 0.164 0.870 0.228 1152 chr3 189496601 189638410 + 0 NA intron (NM_001329964, intron 4 of 13) L2b|LINE|L2 19794 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 0.329 0.080 0.199 0.166 nan 0.062 0.252 0.178 0.242 3.896 1.666 2.412 10.292 0.097 0.154 0.056 0.107 0.134 0.259 0.154 0.104 0.584 145 chr1 239968099 239982819 + 0 NA intron (NM_000740, intron 3 of 4) AluJb|SINE|Alu 87713 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 0.535 0.109 0.325 4.121 0.796 0.170 0.054 0.089 0.247 0.299 0.078 0.288 1.019 0.125 0.153 1.560 2.085 0.028 0.068 0.181 5.039 0.081 49 chr1 45801707 45808636 + 0 NA promoter-TSS (NM_025077) promoter-TSS (NM_025077) -171 NM_025077 114034 Hs.525091 NM_025077 ENSG00000132773 TOE1 hCaf1z target of EGR1, member 1 (nuclear) protein-coding 1.289 0.590 1.292 11.741 2.382 1.261 2.490 0.512 1.722 1.786 0.547 2.491 4.197 1.635 0.885 0.834 0.785 1.810 1.248 0.950 8.245 1.051 789 chr19 41723582 41736919 + 0 NA intron (NM_021913, intron 4 of 19) intron (NM_021913, intron 4 of 19) -2410 NM_001278599 558 Hs.590970 NM_001699 ENSG00000167601 AXL ARK|JTK11|Tyro7|UFO AXL receptor tyrosine kinase protein-coding 1.182 1.718 2.300 0.096 1.058 2.606 9.028 2.163 7.674 0.469 0.491 1.129 0.277 1.666 2.286 0.059 0.082 6.145 3.153 3.308 0.034 3.288 178 chr10 43890233 43906936 + 0 NA intron (NM_001098204, intron 1 of 3) AluSz|SINE|Alu 4715 NM_001098206 3185 Hs.808 NM_004966 ENSG00000169813 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 1.345 1.179 2.784 1.396 4.890 3.137 2.947 0.433 2.326 2.619 0.559 5.003 4.648 3.303 2.205 0.688 0.442 1.885 2.458 1.946 1.127 2.126 1131 chr3 177526908 177553900 + 0 NA intron (NR_110826, intron 1 of 2) intron (NR_110826, intron 1 of 2) 5751 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 0.469 0.220 0.679 0.338 0.748 0.127 2.503 0.601 1.669 1.142 0.276 0.572 0.769 0.151 0.278 0.065 0.117 0.168 0.128 0.429 0.364 1.252 124 chr1 209977980 210002517 + 0 NA Intergenic MER53|DNA|hAT -10728 NM_006147 3664 Hs.591415 NM_006147 ENSG00000117595 IRF6 LPS|OFC6|PIT|PPS|PPS1|VWS|VWS1 interferon regulatory factor 6 protein-coding 1.314 0.096 0.133 0.362 3.522 0.135 0.463 0.081 0.297 2.469 0.857 3.684 2.268 0.384 0.395 0.238 0.277 0.224 0.147 0.204 0.187 0.577 772 chr19 37806393 37810137 + 0 NA promoter-TSS (NM_001329775) promoter-TSS (NM_001329775) -519 NR_138108 284459 Hs.657027 NM_181786 ENSG00000181666 HKR1 ZNF875 HKR1, GLI-Kruppel zinc finger family member protein-coding 0.998 0.595 7.578 2.064 2.291 0.717 6.407 0.948 6.206 1.569 0.622 1.185 3.589 2.078 0.862 0.146 0.423 0.172 0.492 0.836 0.827 1.524 1090 chr3 114424468 114429212 + 0 NA intron (NM_015642, intron 4 of 9) intron (NM_015642, intron 4 of 9) 35532 NR_039959 100616166 NR_039959 ENSG00000264623 MIR4796 mir-4796 microRNA 4796 ncRNA 0.329 0.251 0.151 0.200 0.064 0.197 0.029 0.413 0.038 0.198 0.129 0.160 0.088 0.033 0.057 0.388 0.094 0.064 7.437 627 chr17 36581633 36587267 + 0 NA promoter-TSS (NM_001199417) promoter-TSS (NM_001199417) -270 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 0.357 2.484 2.441 0.332 0.494 0.976 1.053 0.609 1.756 0.345 0.113 0.182 0.305 1.670 0.570 0.165 0.149 2.431 0.192 4.826 0.060 0.504 993 chr20 58532491 58549144 + 0 NA intron (NM_177980, intron 1 of 17) Charlie1a|DNA|hAT-Charlie 7346 NM_177980 60437 Hs.729046 NM_021810 ENSG00000124215 CDH26 VR20 cadherin 26 protein-coding 0.616 0.030 0.160 0.071 0.189 0.048 0.056 0.017 0.066 0.511 0.607 3.794 1.386 0.123 0.119 0.014 0.051 0.020 0.023 0.075 0.028 0.057 1308 chr6 22876469 22894235 + 0 NA Intergenic Intergenic -167199 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 0.832 0.652 0.402 0.315 0.192 0.983 0.793 1.144 4.711 0.366 0.063 0.094 0.125 0.415 0.240 1.035 1.726 0.729 0.052 1.609 0.709 5.619 1429 chr7 74263965 74268599 + 0 NA intron (NM_001281447, intron 1 of 2) intron (NM_001281447, intron 1 of 2) 1590 NM_173537 84163 Hs.647017 NM_173537 ENSG00000196275 GTF2IRD2 FP630|GTF2IRD2 alpha|GTF2IRD2A GTF2I repeat domain containing 2 protein-coding 3.246 1.479 3.556 1.638 6.571 1.615 3.675 1.209 3.592 4.003 1.762 9.367 8.605 7.432 3.191 2.398 1.451 2.793 1.788 2.843 1.228 1.288 715 chr17 79913763 79921370 + 0 NA exon (NM_178493, exon 2 of 11) exon (NM_178493, exon 2 of 11) 1491 NM_178493 147111 Hs.106137 NM_178493 ENSG00000185269 NOTUM hNOTUM NOTUM, palmitoleoyl-protein carboxylesterase protein-coding 0.280 0.293 0.399 3.205 0.343 0.648 0.243 0.174 0.428 0.354 0.211 0.185 0.421 0.413 0.206 8.989 4.899 0.036 0.045 0.177 2.707 1374 chr6 151710028 151714298 + 0 NA intron (NM_020861, intron 1 of 2) CpG 672 NM_020861 57621 Hs.520073 NM_020861 ENSG00000181472 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 4.069 2.474 3.442 7.577 8.445 3.743 6.869 0.906 4.798 6.636 1.205 9.942 6.497 5.440 3.128 5.384 3.220 4.229 2.062 2.965 4.622 1.485 23 chr1 23667834 23672291 + 0 NA intron (NM_005826, intron 1 of 10) intron (NM_005826, intron 1 of 10) 795 NM_001102398 10236 Hs.373763 NM_005826 ENSG00000125944 HNRNPR HNRPR|hnRNP-R heterogeneous nuclear ribonucleoprotein R protein-coding 2.782 2.749 2.660 3.296 6.832 2.850 4.160 1.322 8.301 5.792 1.357 5.715 6.968 3.656 2.214 2.554 1.567 6.358 2.607 4.075 2.846 2.027 1528 chr8 144690170 144700589 + 0 NA exon (NM_001317783, exon 10 of 11) exon (NM_001317783, exon 10 of 11) -3595 NM_023078 65263 Hs.165186 NM_023078 ENSG00000104524 PYCRL PYCR3 pyrroline-5-carboxylate reductase-like protein-coding 1.714 0.784 1.291 1.562 5.063 0.976 7.453 0.869 3.300 3.208 0.605 3.551 2.289 0.949 0.934 1.246 0.881 0.716 1.040 0.779 0.698 0.483 364 chr12 102812522 102834639 + 0 NA intron (NM_001111285, intron 2 of 3) intron (NM_001111285, intron 2 of 3) 48849 NM_001111284 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 0.202 0.045 0.122 2.854 0.223 0.076 0.088 0.003 0.031 0.206 0.011 0.132 0.167 0.129 0.094 0.409 0.703 0.034 0.011 0.055 4.774 0.054 388 chr13 73890883 74074266 + 0 NA Intergenic Intergenic -155807 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 0.812 0.022 0.149 0.174 10.535 0.049 0.055 0.024 0.115 1.857 0.367 1.529 1.877 0.083 0.198 0.052 0.073 0.111 0.079 0.069 0.099 0.171 653 chr17 43447085 43451570 + 0 NA Intergenic Intergenic 53685 NM_199282 201176 Hs.205326 NM_174919 ENSG00000159314 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 3.711 1.436 6.466 0.072 10.434 6.141 6.475 1.566 7.776 4.897 4.075 5.967 6.734 2.857 1.831 0.068 0.134 9.878 6.569 4.202 0.076 4.483 1425 chr7 73888174 73900933 + 0 NA intron (NM_001199207, intron 1 of 26) intron (NM_001199207, intron 1 of 26) 26433 NM_001199207 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 8.312 2.241 0.217 1.115 3.980 3.330 4.019 0.493 1.280 0.953 0.169 3.545 0.743 7.072 1.491 2.210 2.032 4.481 0.010 5.181 0.467 2.355 950 chr20 31317153 31341806 + 0 NA intron (NM_053041, intron 1 of 8) AluSc|SINE|Alu 2335 NM_001099339 149951 Hs.408427 NM_053041 ENSG00000149600 COMMD7 C20orf92|dJ1085F17.3 COMM domain containing 7 protein-coding 1.206 0.281 0.340 0.638 0.494 0.360 2.471 0.275 0.497 0.445 0.208 0.935 0.743 0.666 0.676 0.165 0.118 0.722 0.571 0.456 0.238 0.834 1445 chr7 100484973 100489557 + 0 NA promoter-TSS (NM_001015072) promoter-TSS (NM_001015072) 74 NM_001015072 402682 Hs.534845 NM_001015072 ENSG00000176125 UFSP1 UFSP UFM1 specific peptidase 1 (inactive) protein-coding 7.747 0.891 4.530 1.866 4.610 1.278 1.408 1.484 5.636 4.884 2.694 9.852 8.842 3.744 2.046 2.178 1.448 1.535 5.288 0.727 0.624 1.413 509 chr15 93438452 93464580 + 0 NA intron (NM_001042572, intron 2 of 12) intron (NM_001042572, intron 2 of 12) 3887 NR_036136 100422995 NR_036136 ENSG00000173575 MIR3175 mir-3175 microRNA 3175 ncRNA 1.361 1.550 1.894 2.628 4.673 1.602 1.610 0.503 3.046 1.918 0.445 2.499 3.241 1.621 1.079 0.455 0.723 1.597 1.404 3.569 2.041 1.619 1025 chr22 19927905 19937151 + 0 NA intron (NM_000754, intron 1 of 5) MER31-int|LTR|ERV1 -3013 NM_001282512 10587 Hs.443430 NM_006440 ENSG00000184470 TXNRD2 SELZ|TR|TR-BETA|TR3|TRXR2 thioredoxin reductase 2 protein-coding 1.204 0.597 1.746 2.070 3.779 0.057 2.232 1.695 9.139 3.374 2.310 2.959 4.524 1.885 0.859 0.686 0.562 1.731 0.267 0.888 0.822 0.653 1015 chr21 40127947 40132424 + 0 NA intron (NR_027065, intron 1 of 6) AluJb|SINE|Alu -6004 NR_027067 400866 Hs.278704 NM_001001789 ENSG00000223806 LINC00114 C21orf24|NCRNA00114 long intergenic non-protein coding RNA 114 ncRNA 0.194 2.626 0.130 0.072 0.829 0.069 0.396 1.255 2.866 1.174 0.214 0.133 0.491 0.732 0.209 0.034 0.054 0.572 0.028 7.356 0.087 0.553 367 chr12 108953098 108965698 + 0 NA intron (NM_213595, intron 3 of 4) intron (NM_213595, intron 3 of 4) 4159 NM_001320042 23479 Hs.615131 NM_014301 ENSG00000136003 ISCU 2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU iron-sulfur cluster assembly enzyme protein-coding 1.262 0.570 0.733 4.298 4.950 1.271 3.147 0.674 3.089 2.004 0.806 3.162 4.530 1.979 1.363 0.667 0.721 1.245 1.156 0.863 2.536 0.859 976 chr20 50276125 50284630 + 0 NA intron (NM_006045, intron 13 of 27) intron (NM_006045, intron 13 of 27) -101007 NM_001258294 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T-cells 2 protein-coding 0.263 0.058 5.738 0.050 0.330 0.074 0.186 0.028 0.182 0.273 0.056 0.618 0.441 0.343 0.354 0.082 0.056 0.388 0.039 0.119 0.081 0.131 716 chr17 80832960 80848861 + 0 NA intron (NM_005993, intron 14 of 38) intron (NM_005993, intron 14 of 38) -42979 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 2.494 0.039 0.363 0.208 1.982 0.065 0.328 0.044 0.164 1.587 0.483 2.753 1.376 0.494 0.622 0.240 0.223 0.085 0.779 0.035 0.087 0.960 940 chr20 22541299 22568054 + 0 NA intron (NR_001558, intron 1 of 3) intron (NR_001558, intron 1 of 3) 4604 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|HCCDR1|NCRNA00261|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 0.155 0.060 0.069 4.497 0.082 0.034 0.483 0.027 0.039 0.245 0.113 0.646 0.310 0.043 1.726 1.877 1.630 0.938 0.323 0.071 5.497 0.050 1466 chr8 9446029 9513707 + 0 NA intron (NM_003747, intron 3 of 26) intron (NM_003747, intron 3 of 26) 66423 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 0.198 0.066 0.070 5.479 0.153 0.043 0.039 0.011 0.085 0.095 0.019 0.124 0.077 0.089 0.086 0.028 0.055 0.020 0.011 0.148 4.984 0.044 485 chr15 71144466 71150196 + 0 NA promoter-TSS (NM_018357) promoter-TSS (NM_018357) -727 NM_197958 55323 Hs.416755 NM_018357 ENSG00000166173 LARP6 ACHN La ribonucleoprotein domain family member 6 protein-coding 0.518 3.025 1.040 0.563 1.861 0.426 2.101 0.193 0.480 0.779 0.663 2.009 1.061 3.294 0.898 0.704 0.702 4.880 0.471 5.551 0.285 0.165 685 chr17 59626908 59660814 + 0 NA Intergenic L1PA4|LINE|L1 24702 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex alpha subunit 2 protein-coding 0.445 0.022 2.244 5.986 0.836 0.077 0.146 0.016 0.063 0.484 0.280 0.406 0.403 0.136 0.166 0.770 1.536 0.028 0.052 0.056 5.838 0.072 743 chr19 4051109 4068086 + 0 NA intron (NM_015898, intron 1 of 2) intron (NM_015898, intron 1 of 2) 5930 NM_001317990 51341 Hs.591384 NM_015898 ENSG00000178951 ZBTB7A FBI-1|FBI1|LRF|TIP21|ZBTB7|ZNF857A|pokemon zinc finger and BTB domain containing 7A protein-coding 1.117 1.043 1.916 1.918 3.254 0.983 5.435 0.472 1.581 1.821 0.412 4.387 3.658 2.905 1.253 0.870 0.463 4.581 2.045 1.550 0.965 1.586 778 chr19 39137168 39188857 + 0 NA intron (NM_001322033, intron 1 of 20) AluSz|SINE|Alu 24756 NM_004924 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 2.483 1.227 11.117 2.883 2.792 3.125 3.762 1.157 4.369 2.156 1.154 1.833 3.041 1.608 1.522 0.446 0.432 2.944 1.337 2.594 2.708 3.438 21 chr1 16463948 16516317 + 0 NA Intergenic AluSq2|SINE|Alu -7528 NM_004431 1969 Hs.171596 NM_004431 ENSG00000142627 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 2.127 1.601 2.514 0.361 2.968 2.229 2.897 1.112 2.855 1.086 0.554 3.442 0.978 1.652 1.409 0.206 0.280 5.159 2.476 3.057 0.254 2.028 523 chr16 1819897 1825026 + 0 NA promoter-TSS (NM_002513) promoter-TSS (NM_002513) 679 NM_023936 65993 Hs.720388 NM_023936 ENSG00000074071 MRPS34 MRP-S12|MRP-S34|MRPS12 mitochondrial ribosomal protein S34 protein-coding 2.662 1.328 2.692 3.315 5.746 3.150 6.438 0.996 2.843 3.492 1.477 8.198 6.297 2.813 2.280 2.770 1.349 1.745 1.572 1.604 1.252 0.642 720 chr18 9913027 9916810 + 0 NA intron (NM_194434, intron 1 of 5) CpG 963 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 3.543 2.701 1.231 2.154 9.586 2.886 4.367 1.548 4.312 6.717 2.099 4.956 11.239 3.512 2.282 3.363 2.164 4.634 2.636 3.192 0.998 1.828 1270 chr5 172183826 172210872 + 0 NA intron (NM_004417, intron 1 of 3) intron (NM_004417, intron 1 of 3) 854 NM_004417 1843 Hs.171695 NM_004417 ENSG00000120129 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 0.773 1.268 4.500 0.890 1.348 1.657 2.325 0.681 2.241 0.829 0.372 0.932 1.185 3.113 1.071 0.493 0.405 2.107 0.347 2.702 0.545 0.763 460 chr15 30916204 30920680 + 0 NA promoter-TSS (NM_001039841) promoter-TSS (NM_001039841) -437 NM_001039841 89839 Hs.659621 NM_001039841 ENSG00000187951 ARHGAP11B B'-T|FAM7B1 Rho GTPase activating protein 11B protein-coding 3.925 1.134 5.377 7.766 16.855 5.036 5.013 1.611 9.612 4.452 2.689 6.693 9.212 6.076 3.581 2.811 3.143 6.588 7.161 1.770 5.489 2.780 1460 chr7 150004575 150022412 + 0 NA intron (NM_001164458, intron 1 of 7) L1MC4a|LINE|L1 -6803 NM_001142928 65999 Hs.647119 NM_023942 ENSG00000127399 LRRC61 HSPC295 leucine rich repeat containing 61 protein-coding 1.703 0.410 0.856 0.528 0.725 0.574 1.857 0.916 2.765 0.850 0.095 1.796 0.224 3.353 0.492 0.218 0.252 0.175 0.218 0.561 0.368 1.409 1389 chr7 12678464 12702422 + 0 NA intron (NM_033128, intron 12 of 13) intron (NM_033128, intron 12 of 13) -36009 NM_001037164 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 0.467 0.227 0.190 0.312 0.516 0.224 2.109 1.480 2.667 0.570 0.252 0.528 0.525 0.596 0.361 0.279 0.512 1.166 0.191 0.414 0.274 0.617 324 chr12 15081052 15088608 + 0 NA intron (NM_152321, intron 3 of 6) intron (NM_152321, intron 3 of 6) -2771 NM_001300784 121506 Hs.162143 NM_152321 ENSG00000139055 ERP27 C12orf46|PDIA8 endoplasmic reticulum protein 27 protein-coding 2.087 0.049 0.103 0.042 0.346 0.020 0.349 0.010 0.027 0.395 0.137 0.901 0.652 0.074 0.510 0.038 0.078 0.236 1.584 0.074 0.030 3.336 453 chr14 102728971 102772656 + 0 NA intron (NM_001330234, intron 1 of 11) MLT1J-int|LTR|ERVL-MaLR 20724 NM_001272011 5891 Hs.104119 NM_014226 ENSG00000080823 MOK RAGE|RAGE-1|RAGE1|STK30 MOK protein kinase protein-coding 0.292 0.638 0.830 0.125 0.423 0.793 0.952 1.047 4.932 0.526 0.088 1.469 0.917 0.261 0.500 0.039 0.097 2.100 0.997 1.236 0.045 0.792 723 chr18 20418333 20446599 + 0 NA Intergenic L1MEf|LINE|L1 -65666 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 0.266 0.265 0.060 0.064 4.937 0.045 0.139 0.098 0.257 0.515 0.705 1.283 0.749 0.087 0.066 0.014 0.050 0.091 0.033 0.978 0.029 0.096 244 chr11 61127608 61148196 + 0 NA TTS (NM_001330281) TTS (NM_001330281) -8147 NM_153611 220002 Hs.22546 NM_153611 ENSG00000162144 CYB561A3 CYBASC3|LCYTB cytochrome b561 family member A3 protein-coding 0.779 0.307 0.587 0.833 1.907 0.632 1.018 0.267 1.354 1.726 0.844 2.205 3.970 0.720 0.439 0.436 0.406 0.519 0.479 0.611 0.604 0.506 1202 chr4 185392863 185397047 + 0 NA intron (NM_002199, intron 1 of 8) CpG 771 NM_002199 3660 Hs.654566 NM_002199 ENSG00000168310 IRF2 IRF-2 interferon regulatory factor 2 protein-coding 5.220 2.365 6.804 5.242 7.224 1.659 5.548 1.426 4.998 3.618 1.699 8.358 6.564 2.385 2.954 3.770 2.349 3.259 3.340 3.506 4.763 2.793 637 chr17 38570580 38574949 + 0 NA exon (NM_001067, exon 3 of 35) exon (NM_001067, exon 3 of 35) 1438 NM_001067 7153 Hs.156346 NM_001067 ENSG00000131747 TOP2A TOP2|TP2A topoisomerase (DNA) II alpha protein-coding 1.894 1.105 2.342 2.530 5.593 4.465 4.792 0.674 3.784 2.904 1.204 2.874 7.018 2.574 1.665 1.923 2.121 4.399 1.626 2.202 2.174 2.778 351 chr12 58280039 58293586 + 0 NA Intergenic AluSz|SINE|Alu 43135 NR_038269 100506844 Hs.90286 NR_038269 LOC100506844 - uncharacterized LOC100506844 ncRNA 1.911 0.264 0.552 0.255 2.790 0.640 2.057 0.197 0.579 1.992 1.170 7.950 1.850 0.590 1.365 0.529 0.456 0.846 0.666 0.271 0.220 0.593 1040 chr22 41680447 41701858 + 0 NA intron (NM_001317930, intron 1 of 15) SVA_D|Other|Other -6355 NM_017590 23264 Hs.592188 NM_017590 ENSG00000100403 ZC3H7B RoXaN zinc finger CCCH-type containing 7B protein-coding 1.514 0.717 1.633 0.665 2.582 0.605 3.927 0.777 2.968 1.418 0.855 2.565 2.408 2.557 0.970 0.493 0.457 2.531 1.847 1.573 0.426 1.480 595 chr17 7486098 7494703 + 0 NA intron (NR_024603, intron 5 of 6) intron (NR_024603, intron 5 of 6) -3003 NR_136401 100996842 Hs.720681 NM_001322800 ENSG00000233223 LOC100996842 - uncharacterized LOC100996842 protein-coding 1.427 1.011 1.342 2.319 6.237 1.113 1.363 1.703 6.455 4.138 1.768 6.896 4.283 1.287 1.271 0.972 0.826 2.652 0.506 2.322 1.689 0.976 1138 chr3 181610895 181639831 + 0 NA Intergenic Intergenic -44789 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 0.357 0.030 0.173 6.990 nan 0.065 0.101 0.015 0.083 3.259 2.688 2.423 10.116 0.099 0.211 1.508 2.439 0.019 0.119 0.058 9.791 0.076 488 chr15 71900822 71908857 + 0 NA intron (NM_001286429, intron 1 of 11) intron (NM_001286429, intron 1 of 11) 65298 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 0.237 0.021 0.086 4.693 0.330 0.123 0.012 0.030 0.029 0.214 0.149 1.022 0.311 0.103 0.206 0.058 0.107 0.008 0.005 0.086 6.144 0.023 752 chr19 13253362 13284971 + 0 NA Intergenic Intergenic 7884 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 2.596 1.179 4.844 1.509 2.531 1.131 4.788 1.026 4.178 3.509 3.190 3.641 3.946 1.753 1.477 0.854 0.580 4.992 3.260 1.859 0.889 1.172 1232 chr5 90671518 90680892 + 0 NA promoter-TSS (NM_001329671) promoter-TSS (NM_001329671) 41 NR_027435 100129716 Hs.116364 NR_027435 ENSG00000281357 ARRDC3-AS1 - ARRDC3 antisense RNA 1 ncRNA 3.637 1.268 5.809 6.962 7.194 3.132 5.869 0.584 4.992 2.013 0.953 5.906 3.896 5.762 2.286 0.910 1.228 3.574 3.451 3.293 6.356 2.971 1012 chr21 36595072 36604700 + 0 NA Intergenic MIRb|SINE|MIR -178291 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 0.660 0.090 0.220 3.208 0.516 0.187 1.006 0.626 0.545 0.354 0.184 0.360 0.095 0.306 0.327 2.079 2.338 0.510 0.873 0.153 4.726 2.398 1498 chr8 77315796 77321757 + 0 NA promoter-TSS (NR_105006) promoter-TSS (NR_105006) -113 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 0.271 2.015 0.056 0.054 0.238 0.039 0.943 1.962 13.723 0.077 0.026 0.283 0.150 2.093 0.175 2.267 1.253 5.471 0.049 2.419 835 chr2 28490980 28520796 + 0 NA intron (NR_137440, intron 10 of 13) intron (NR_137440, intron 10 of 13) 27438 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 1.174 0.349 0.694 0.330 1.265 1.033 3.370 1.180 2.649 1.155 0.794 1.314 2.095 0.622 0.597 0.125 0.236 1.976 1.095 0.856 0.170 1.062 1607 chr9 136324365 136326568 + 0 NA TTS (NM_139027) TTS (NM_139027) 379 NM_001242369 11094 Hs.62003 NM_017586 ENSG00000160325 CACFD1 C9orf7|D9S2135|FLOWER calcium channel flower domain containing 1 protein-coding 2.360 1.405 12.095 3.047 2.239 1.134 2.653 0.943 3.076 2.497 0.654 2.612 1.610 2.200 1.364 2.269 1.044 1.727 1.093 1.017 1.309 0.384 1267 chr5 158125178 158132807 + 0 NA intron (NM_182708, intron 14 of 14) intron (NM_182708, intron 14 of 14) -292211 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LOC101927697 - uncharacterized LOC101927697 ncRNA 0.149 0.649 0.226 0.125 0.180 0.051 0.048 1.771 6.149 0.147 0.021 0.124 0.096 0.386 0.068 0.040 0.101 3.453 1.724 0.121 0.050 379 chr13 23361243 23370041 + 0 NA Intergenic L1MB7|LINE|L1 106678 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - brain abundant, membrane attached signal protein 1 pseudogene 1 pseudo 0.253 0.028 0.064 0.462 0.098 3.533 0.117 0.063 0.126 0.110 0.320 0.075 0.063 0.226 0.638 0.829 0.003 0.014 0.013 0.752 0.023 1386 chr7 5805264 5821664 + 0 NA intron (NM_207111, intron 1 of 16) AluSx4|SINE|Alu 7897 NM_207111 54476 Hs.487458 NM_019011 ENSG00000011275 RNF216 CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN ring finger protein 216 protein-coding 0.864 1.145 0.964 0.563 0.809 1.780 2.095 1.491 5.546 1.129 0.202 1.197 1.322 1.993 0.578 0.338 0.339 2.346 0.368 2.667 0.397 0.312 1032 chr22 30640333 30659835 + 0 NA Intergenic Intergenic -7244 NM_002309 3976 Hs.2250 NM_002309 ENSG00000128342 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 1.403 1.239 4.662 0.247 0.506 0.605 4.379 0.672 1.009 0.602 0.486 4.227 1.091 1.515 1.793 0.164 0.186 1.321 2.995 2.298 0.141 2.212 1536 chr8 145156632 145160805 + 0 NA promoter-TSS (NM_032272) promoter-TSS (NM_032272) 420 NR_038270 81858 Hs.529755 NM_030974 ENSG00000179526 SHARPIN SIPL1 SHANK associated RH domain interactor protein-coding 1.801 1.484 2.224 4.228 11.683 2.142 13.602 1.731 5.599 5.606 1.559 6.369 6.891 3.053 2.609 2.956 1.510 1.511 2.350 1.444 1.870 1.135 113 chr1 173792535 173794815 + 0 NA promoter-TSS (NM_001171182) promoter-TSS (NM_001171182) 102 NM_001127181 91687 Hs.531856 NM_033319 ENSG00000120334 CENPL C1orf155|CENP-L|dJ383J4.3 centromere protein L protein-coding 6.180 2.703 3.185 6.968 11.561 4.159 5.264 2.048 12.598 6.991 1.634 8.257 18.258 4.541 6.291 3.821 3.252 8.745 2.832 3.930 4.677 5.429 901 chr2 182643069 182651831 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR -102058 NM_002500 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 0.122 0.226 5.379 0.531 1.733 1.466 0.457 0.126 0.266 0.898 0.576 1.110 2.185 0.296 0.166 0.053 0.239 0.578 0.493 0.394 0.406 0.268 1035 chr22 35767477 35775417 + 0 NA Intergenic L3|LINE|CR1 -5613 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding 1.197 0.154 1.148 2.112 0.507 0.387 1.551 1.564 3.599 1.417 0.533 0.881 4.211 1.240 0.184 0.437 0.669 0.603 0.580 0.378 1.649 1.160 152 chr10 412741 422132 + 0 NA intron (NM_014974, intron 17 of 36) MLT1C|LTR|ERVL-MaLR -89410 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 0.222 0.026 0.092 4.362 0.193 0.169 0.039 0.068 0.133 0.267 0.061 0.222 0.123 0.075 0.033 3.719 3.716 0.016 0.035 4.077 0.080 342 chr12 54671226 54679525 + 0 NA intron (NR_002944, intron 2 of 9) intron (NR_002944, intron 2 of 9) 842 NR_002944 664709 Hs.534822 NR_002944 HNRNPA1P10 HNRPA1L-2 heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 pseudo 2.608 1.731 2.752 6.299 8.396 3.518 2.516 0.900 6.973 4.231 1.159 6.017 8.915 1.992 2.233 1.881 2.650 3.547 2.091 4.569 3.288 2.059 452 chr14 102551697 102555111 + 0 NA 5' UTR (NM_005348, exon 1 of 11) 5' UTR (NM_005348, exon 1 of 11) 108 NM_005348 3320 Hs.525600 NM_005348 ENSG00000080824 HSP90AA1 EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2 heat shock protein 90 alpha family class A member 1 protein-coding 4.725 0.764 6.574 3.201 10.009 3.671 4.340 1.873 8.721 6.949 1.251 10.457 11.036 4.930 4.169 2.918 1.609 4.190 2.343 1.621 1.954 1.841 1419 chr7 72613575 72622557 + 0 NA intron (NR_003580, intron 21 of 23).2 AluSz|SINE|Alu -16608 NR_003186 654816 Hs.655201 NR_003186 ENSG00000182487 NCF1B NCF-1B|SH3PXD1B neutrophil cytosolic factor 1B pseudogene pseudo 0.333 1.558 0.165 0.298 0.709 0.214 0.949 0.290 0.592 1.752 0.806 5.817 6.146 4.383 0.633 0.120 0.216 3.996 0.019 4.664 0.103 0.417 862 chr2 101435013 101440965 + 0 NA intron (NM_002518, intron 1 of 20) intron (NM_002518, intron 1 of 20) 1376 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 0.407 0.416 3.397 1.383 1.981 3.487 2.318 0.495 1.205 1.478 0.229 3.182 0.986 0.093 2.008 3.178 2.077 0.125 0.560 0.468 0.289 0.385 295 chr11 128581245 128588405 + 0 NA intron (NM_002017, intron 1 of 8) AluSc|SINE|Alu -18907 NR_038908 100507392 Hs.657715 NR_038908 ENSG00000254703 SENCR FLI1-AS1|lncRNA9 smooth muscle and endothelial cell enriched migration/differentiation-associated long non-coding RNA ncRNA 0.269 1.334 0.140 0.149 0.136 0.543 0.323 1.983 4.863 0.234 0.081 0.266 0.039 0.118 0.189 0.138 0.101 2.715 0.012 3.144 0.123 0.387 579 chr16 88847185 88852359 + 0 NA intron (NM_001142864, intron 1 of 50) intron (NM_001142864, intron 1 of 50) 1856 NM_001142864 9780 Hs.377001 NM_001142864 ENSG00000103335 PIEZO1 DHS|FAM38A|LMPH3|Mib piezo type mechanosensitive ion channel component 1 protein-coding 2.463 2.227 2.920 2.022 5.715 2.531 5.032 1.660 4.167 5.026 1.549 5.484 5.466 4.253 1.571 1.419 0.818 4.469 3.270 3.396 0.653 2.850 341 chr12 54651493 54657332 + 0 NA intron (NM_012117, intron 1 of 4) intron (NM_012117, intron 1 of 4) -1042 NM_001127321 23468 Hs.349283 NM_012117 ENSG00000094916 CBX5 HEL25|HP1|HP1A chromobox 5 protein-coding 0.366 3.460 2.159 0.268 0.666 1.875 0.354 0.400 1.552 0.382 0.056 0.213 0.367 1.965 0.659 0.069 0.104 3.254 0.043 9.471 0.202 1.406 1056 chr3 11278522 11282720 + 0 NA intron (NM_001098211, intron 1 of 1) L1MB7|LINE|L1 12952 NM_001098211 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 0.130 2.992 0.347 0.153 0.152 0.546 3.956 1.097 5.237 0.573 0.039 0.977 0.072 2.399 1.229 0.038 0.057 9.849 1.663 10.114 0.108 3.919 535 chr16 11883368 11892927 + 0 NA intron (NM_014153, intron 1 of 22) intron (NM_014153, intron 1 of 22) 2967 NM_014153 29066 Hs.371856 NM_014153 ENSG00000122299 ZC3H7A HSPC055|ZC3H7|ZC3HDC7 zinc finger CCCH-type containing 7A protein-coding 1.397 0.816 2.103 5.358 3.047 1.527 3.281 0.649 2.993 1.682 0.398 1.960 2.668 2.102 0.894 1.655 1.371 1.958 0.637 1.075 3.749 0.642 1618 chr9 140505472 140507969 + 0 NA intron (NM_152285, intron 1 of 7) intron (NM_152285, intron 1 of 7) 6261 NR_122036 85026 Hs.522520 NM_032937 ENSG00000203993 ARRDC1-AS1 C9orf37 ARRDC1 antisense RNA 1 ncRNA 7.219 1.871 10.330 0.513 7.540 3.441 3.616 1.070 2.335 5.770 2.664 10.317 4.280 2.252 1.988 1.047 0.960 8.924 9.718 5.512 0.322 2.827 77 chr1 150943098 150955907 + 0 NA Intergenic Intergenic -2023 NM_181746 29956 Hs.744017 NM_013384 ENSG00000143418 CERS2 L3|LASS2|SP260|TMSG1 ceramide synthase 2 protein-coding 3.326 0.814 0.899 1.134 1.708 1.376 2.787 0.762 1.971 1.222 0.333 2.990 2.277 2.162 2.238 3.149 1.957 2.290 0.825 1.111 0.490 1.901 683 chr17 58647948 58652289 + 0 NA intron (NR_126009, intron 2 of 3) L2a|LINE|L2 8211 NR_126009 388406 Hs.368309 NR_126009 ENSG00000267772 LINC01999 - long intergenic non-protein coding RNA 1999 ncRNA 0.121 2.681 0.299 0.101 0.341 0.089 0.129 0.163 0.525 0.256 0.039 0.119 0.271 0.209 0.071 0.265 0.038 7.719 0.080 0.058 541 chr16 30073868 30089369 + 0 NA 3' UTR (NM_000034, exon 14 of 14) 3' UTR (NM_000034, exon 14 of 14) 4624 NM_001243177 226 Hs.513490 NM_000034 ENSG00000149925 ALDOA ALDA|GSD12|HEL-S-87p aldolase, fructose-bisphosphate A protein-coding 1.920 1.086 2.920 3.363 4.775 2.301 5.459 1.019 4.737 2.879 0.990 6.304 7.638 1.917 1.360 1.272 0.896 2.244 1.707 1.644 2.334 1.581 1215 chr5 33635829 33655773 + 0 NA intron (NM_030955, intron 9 of 23) L1MC4a|LINE|L1 204919 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 0.193 0.043 0.136 3.168 0.231 0.187 0.074 0.189 0.576 0.284 0.017 0.230 0.111 0.078 0.091 1.275 1.739 0.020 0.008 0.054 4.613 0.095 64 chr1 94156307 94170278 + 0 NA intron (NM_001261408, intron 3 of 13) AluSp|SINE|Alu -15898 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 1.860 1.791 0.303 0.107 0.428 1.976 5.516 1.673 3.445 0.707 0.433 2.594 0.603 1.711 0.820 0.034 0.062 6.821 5.177 3.950 0.058 4.240 1473 chr8 37400397 37416766 + 0 NA Intergenic Intergenic -29677 NR_121621 100507420 Hs.105962 NR_121620 LINC01605 - long intergenic non-protein coding RNA 1605 ncRNA 0.245 0.318 0.157 1.201 1.729 0.412 0.144 0.401 0.438 0.639 3.551 0.314 0.996 0.325 0.071 0.232 0.442 1.105 0.061 0.669 1.769 0.093 765 chr19 23057666 23069445 + 0 NA Intergenic HUERS-P3-int|LTR|ERV1 -96582 NM_001080409 7652 Hs.568380 NM_001080409 ENSG00000213973 ZNF99 C19orf9|F8281 zinc finger protein 99 protein-coding 0.126 0.011 0.223 0.027 0.088 0.026 0.055 0.662 5.313 0.079 0.013 0.055 0.126 0.065 0.080 0.006 0.010 0.012 0.011 0.037 0.032 881 chr2 153573019 153575943 + 0 NA promoter-TSS (NM_152522) promoter-TSS (NM_152522) 74 NR_024526 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 5.430 2.493 5.514 5.289 10.414 5.107 7.719 1.607 7.719 4.214 2.403 6.771 12.826 5.594 4.807 4.560 2.445 4.264 2.969 3.222 3.884 2.563 1628 chrX 129242554 129255950 + 0 NA Intergenic Intergenic -4564 NM_001127197 2000 Hs.271940 NM_001421 ENSG00000102034 ELF4 ELFR|MEF E74 like ETS transcription factor 4 protein-coding 0.703 0.657 0.848 0.375 2.965 0.661 1.414 0.506 1.169 1.837 0.717 1.765 3.459 1.990 0.388 0.385 0.244 1.661 0.494 1.186 0.178 4.271 312 chr12 8184174 8189822 + 0 NA intron (NM_018416, intron 1 of 10) intron (NM_018416, intron 1 of 10) 1639 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 1.260 2.697 0.557 1.210 2.005 3.583 2.129 0.416 1.364 2.748 0.643 2.089 3.279 2.114 1.072 0.991 0.581 1.545 0.682 5.361 0.426 0.821 897 chr2 178175352 178199782 + 0 NA intron (NR_026966, intron 6 of 8) intron (NR_026966, intron 6 of 8) -8957 NR_106767 102465255 NR_106767 ENSG00000278418 MIR6512 hsa-mir-6512|mir-6512 microRNA 6512 ncRNA 0.235 0.046 0.158 0.123 0.594 0.072 0.240 0.061 0.166 1.153 1.991 0.927 5.750 0.107 0.123 0.141 0.218 0.062 0.014 0.107 0.052 0.100 45 chr1 43823288 43840034 + 0 NA intron (NM_001256402, intron 1 of 6) intron (NM_001256402, intron 1 of 6) -1275 NR_106792 102466723 NR_106792 ENSG00000066322 MIR6734 hsa-mir-6734 microRNA 6734 ncRNA 1.521 1.257 1.003 3.142 2.801 1.294 1.051 0.775 2.361 2.655 0.596 3.015 4.841 1.753 0.921 0.801 0.588 3.504 2.046 2.146 1.587 2.098 405 chr14 23767629 23777705 + 0 NA promoter-TSS (NM_001276318) promoter-TSS (NM_001276318) -610 NM_001276318 90673 Hs.601513 NM_001276318 ENSG00000235194 PPP1R3E - protein phosphatase 1 regulatory subunit 3E protein-coding 2.055 0.787 1.815 1.656 2.431 1.606 3.158 0.925 2.801 3.603 0.863 6.035 6.592 0.965 0.979 0.778 0.784 1.625 0.624 1.095 0.639 0.384 507 chr15 90320232 90327746 + 0 NA Intergenic Intergenic 4400 NM_001039958 145873 Hs.37311 NM_001039958 ENSG00000188095 MESP2 SCDO2|bHLHc6 mesoderm posterior bHLH transcription factor 2 protein-coding 0.171 0.401 0.171 0.128 0.488 0.130 0.513 1.133 1.835 4.098 3.114 1.124 3.222 0.639 0.110 0.067 0.112 0.559 0.306 0.658 0.062 1.890 237 chr11 45938392 45957142 + 0 NA intron (NM_152312, intron 7 of 13) intron (NM_152312, intron 7 of 13) 3540 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 1.019 0.155 0.481 1.341 2.672 0.351 0.498 0.278 0.970 1.943 0.474 3.637 1.191 0.417 0.202 0.569 0.460 0.336 0.393 0.244 0.664 0.117 1002 chr21 34913052 34916588 + 0 NA promoter-TSS (NM_001291412) promoter-TSS (NM_001291412) -356 NM_000819 2618 Hs.473648 NM_000819 ENSG00000159131 GART AIRS|GARS|GARTF|PAIS|PGFT|PRGS phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase protein-coding 4.919 2.192 5.498 10.635 7.564 5.440 8.134 2.034 11.610 5.888 1.635 6.575 13.889 5.027 3.241 3.094 3.445 3.960 2.846 4.139 7.014 3.900 1173 chr4 56411274 56415835 + 0 NA promoter-TSS (NM_004898) promoter-TSS (NM_004898) -478 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 3.506 1.462 2.967 3.324 5.007 1.619 4.891 1.680 9.523 4.182 1.496 5.377 4.433 3.445 3.715 2.748 1.677 3.630 9.997 3.406 1.976 3.562 370 chr12 115061970 115067565 + 0 NA Intergenic Intergenic 57202 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 0.176 0.065 0.080 0.196 0.316 4.269 0.049 0.027 0.037 0.239 0.058 0.068 0.380 0.076 0.048 0.204 0.179 0.012 0.007 0.961 0.018 309 chr12 7033564 7039774 + 0 NA promoter-TSS (NM_001940) promoter-TSS (NM_001940) -811 NM_001940 1822 Hs.143766 NM_001940 ENSG00000111676 ATN1 B37|D12S755E|DRPLA|HRS|NOD atrophin 1 protein-coding 4.123 1.675 1.281 3.237 4.455 3.453 7.283 0.826 2.716 5.162 2.204 7.431 8.802 3.840 1.934 1.919 1.622 4.646 1.604 2.742 1.651 2.219 567 chr16 75373468 75377993 + 0 NA intron (NM_006324, intron 5 of 6) intron (NM_006324, intron 5 of 6) -73779 NM_001170715 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 0.238 0.164 8.627 0.200 0.621 0.067 0.758 0.069 0.140 0.219 0.072 0.897 0.588 0.332 0.275 0.051 0.055 0.120 0.278 0.555 0.051 0.124 416 chr14 38047226 38070735 + 0 NA 3' UTR (NM_004496, exon 2 of 2) 3' UTR (NM_004496, exon 2 of 2) 5345 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 15.993 0.021 3.954 1.374 10.321 2.462 10.228 0.023 0.146 0.529 0.179 10.804 0.754 0.124 4.444 1.430 1.263 1.139 2.053 0.052 0.924 2.866 100 chr1 157103118 157126220 + 0 NA Intergenic Intergenic -6286 NM_001145312 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1|bA110J1.4 ETS variant 3 protein-coding 0.874 0.269 0.383 2.393 1.049 0.244 0.904 0.141 0.502 1.716 0.387 1.443 1.860 0.419 0.778 0.742 0.826 0.208 0.080 0.269 2.098 0.176 380 chr13 27553431 27567471 + 0 NA Intergenic Intergenic -139219 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 0.271 0.150 0.222 0.043 0.140 0.316 3.968 0.527 1.481 0.125 0.058 0.312 0.244 0.279 1.038 0.022 0.008 0.396 0.105 0.412 0.025 0.081 914 chr2 208392888 208397163 + 0 NA intron (NM_004379, intron 1 of 7) intron (NM_004379, intron 1 of 7) 409 NM_004379 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 3.220 1.189 3.991 4.119 4.823 3.038 7.702 1.404 6.377 3.043 1.320 6.156 6.768 4.011 3.620 2.556 2.328 3.083 2.416 2.087 3.838 2.232 1279 chr5 175814354 175817103 + 0 NA non-coding (NR_134316, exon 1 of 4) non-coding (NR_134316, exon 1 of 4) 200 NM_001317975 51491 Hs.696283 NM_016391 ENSG00000048162 NOP16 HSPC111|HSPC185 NOP16 nucleolar protein protein-coding 3.562 1.621 5.238 7.317 12.155 3.176 5.618 0.734 5.293 6.179 2.444 7.521 17.948 2.790 5.453 3.378 2.837 2.638 1.994 1.658 4.545 3.038 1258 chr5 142771873 142786046 + 0 NA intron (NM_001204265, intron 2 of 6) intron (NM_001204265, intron 2 of 6) 4295 NM_000176 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 1.662 1.319 4.003 1.382 14.628 2.226 2.957 0.718 3.517 1.816 0.812 3.345 7.184 3.678 1.351 1.275 0.891 2.569 1.699 2.297 1.360 1.441 300 chr11 129870575 129874875 + 0 NA promoter-TSS (NM_199437) promoter-TSS (NM_199437) 5 NM_199437 56980 Hs.275086 NM_020228 ENSG00000170325 PRDM10 PFM7 PR/SET domain 10 protein-coding 5.523 2.995 6.639 8.290 4.037 4.172 10.279 2.369 10.152 7.128 2.325 12.032 6.497 4.602 5.052 4.483 3.016 7.745 12.282 3.892 5.585 4.617 965 chr20 43964283 43978238 + 0 NA intron (NM_002999, intron 1 of 4) intron (NM_002999, intron 1 of 4) 5804 NM_002999 6385 Hs.632267 NM_002999 ENSG00000124145 SDC4 SYND4 syndecan 4 protein-coding 6.148 1.207 1.453 0.199 2.279 0.719 3.589 1.465 3.349 2.247 0.485 6.224 5.204 5.232 1.845 0.181 0.314 6.452 3.762 2.450 0.180 4.010 1439 chr7 98862686 98874390 + 0 NA Intergenic Intergenic -2386 NR_002147 84176 Hs.621401 NR_002147 MYH16 MHC20|MYH16P|MYH5 myosin heavy chain 16 pseudogene pseudo 0.774 0.476 0.375 0.111 0.720 0.098 0.635 0.061 0.112 0.944 0.255 1.612 1.111 0.945 0.323 0.034 0.073 0.730 14.584 0.955 0.059 1.616 824 chr19 56110026 56118335 + 0 NA exon (NM_153219, exon 2 of 2) exon (NM_153219, exon 2 of 2) 2474 NM_153219 147807 Hs.440291 NM_153219 ENSG00000171443 ZNF524 - zinc finger protein 524 protein-coding 4.088 2.028 2.755 2.368 5.596 2.483 2.930 1.943 7.500 3.659 1.133 4.078 6.386 1.981 1.794 1.638 1.003 2.073 2.537 3.128 1.787 1.085 1395 chr7 20273935 20283447 + 0 NA Intergenic Intergenic 21491 NR_134569 100506098 Hs.59203 NR_134567 ENSG00000233834 LOC100506098 - uncharacterized LOC100506098 ncRNA 0.708 0.039 0.360 0.135 1.309 0.024 0.135 0.008 0.079 0.318 0.792 1.947 0.232 0.110 0.811 0.049 0.051 0.670 0.026 0.162 0.048 7.936 120 chr1 203717082 203740858 + 0 NA Intergenic AluJb|SINE|Alu -5314 NM_017773 54900 Hs.272794 NM_017773 ENSG00000122188 LAX1 LAX lymphocyte transmembrane adaptor 1 protein-coding 0.252 0.109 0.082 0.112 2.255 0.051 0.105 0.208 0.445 1.190 3.274 1.667 4.350 0.162 0.184 0.046 0.068 0.121 0.034 0.305 0.031 0.128 286 chr11 118488038 118495423 + 0 NA intron (NM_001144758, intron 4 of 22) MIR3|SINE|MIR 13424 NM_001144758 23187 Hs.504062 NM_015157 ENSG00000019144 PHLDB1 LL5A pleckstrin homology like domain family B member 1 protein-coding 0.889 2.598 2.179 0.783 1.930 1.799 4.022 0.827 2.460 0.941 1.187 4.362 1.339 3.694 1.708 0.664 0.936 3.889 2.528 4.949 0.654 1.525 1075 chr3 55534819 55559634 + 0 NA intron (NM_015576, intron 16 of 16) intron (NM_015576, intron 16 of 16) -25556 NM_003392 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 0.520 0.045 0.107 0.985 0.160 0.052 0.050 0.042 0.086 1.345 0.953 0.300 3.708 0.147 0.075 0.751 1.061 0.008 0.008 0.094 1.520 0.057 800 chr19 45237717 45259161 + 0 NA Intergenic Intergenic -3539 NM_005178 602 Hs.31210 NM_005178 ENSG00000069399 BCL3 BCL4|D19S37 B-cell CLL/lymphoma 3 protein-coding 3.170 0.791 2.574 0.279 1.876 2.266 5.253 1.453 3.907 1.882 1.209 2.342 5.834 1.098 1.708 0.214 0.176 1.540 0.942 1.922 0.252 0.912 1148 chr3 189116068 189123056 + 0 NA Intergenic MIR3|SINE|MIR -161179 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 0.991 0.018 0.213 0.092 nan 0.099 0.182 0.114 0.099 5.584 6.259 3.883 24.227 0.161 0.344 0.089 0.330 0.055 0.042 0.065 0.145 0.197 254 chr11 63374327 63385324 + 0 NA intron (NM_001128203, intron 2 of 4) Zaphod3|DNA|hAT-Tip100 2084 NM_007069 11145 Hs.502775 NM_007069 ENSG00000176485 PLA2G16 AdPLA|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3 phospholipase A2 group XVI protein-coding 0.386 0.349 8.152 0.228 0.681 0.390 1.963 0.123 0.300 0.390 0.161 0.506 0.302 1.558 0.265 0.170 0.187 1.726 0.069 0.488 0.210 5.479 392 chr13 75929775 75943304 + 0 NA exon (NM_001286659, exon 2 of 19) exon (NM_001286659, exon 2 of 19) 119765 NM_001286658 9882 Hs.210891 NM_014832 ENSG00000136111 TBC1D4 AS160|NIDDM5 TBC1 domain family member 4 protein-coding 0.347 0.165 0.086 0.087 0.194 0.191 0.536 1.745 6.832 0.274 0.102 0.503 0.083 0.362 0.169 0.023 0.063 1.796 0.063 0.271 0.034 0.648 1321 chr6 31780391 31806266 + 0 NA Intergenic Intergenic -2184 NM_005346 3304 Hs.274402 NM_005346 ENSG00000204388 HSPA1B HSP70-1B|HSP70-2|HSP70.2 heat shock protein family A (Hsp70) member 1B protein-coding 2.990 0.996 3.119 2.340 5.062 2.382 3.448 1.284 6.216 2.645 1.238 4.860 8.921 4.802 1.398 0.807 0.908 2.124 1.785 1.558 1.352 3.188 1365 chr6 119213670 119218751 + 0 NA intron (NM_014034, intron 1 of 3) CpG 969 NM_014034 25842 Hs.292316 NM_014034 ENSG00000111875 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 3.576 0.804 3.626 3.895 4.640 4.148 4.982 0.741 4.418 3.190 0.999 6.730 9.131 2.176 1.987 2.516 2.496 3.808 1.767 1.633 4.341 2.251 1407 chr7 36153612 36158636 + 0 NA Intergenic L2c|LINE|L2 21204 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 0.362 1.257 3.001 0.137 0.268 0.224 3.127 2.745 9.717 0.514 0.081 0.460 0.697 1.532 0.726 0.030 0.099 4.448 1.495 2.736 0.115 1.016 496 chr15 75741901 75749143 + 0 NA intron (NM_001145357, intron 1 of 20) CpG-8103 -1435 NM_001145358 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 2.830 1.932 4.020 4.208 7.353 2.899 3.983 0.989 4.751 5.619 1.806 6.287 4.840 2.164 2.205 3.290 1.998 3.795 1.629 2.864 2.287 1.333 605 chr17 17721625 17753791 + 0 NA intron (NM_001005291, intron 1 of 19) L1ME4a|LINE|L1 2617 NM_001005291 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP-1c|SREBP1|SREBP1a|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 1.343 0.859 0.670 2.403 4.769 1.039 1.727 0.862 2.181 1.614 1.047 2.716 4.661 2.300 1.495 0.983 0.815 0.725 1.230 1.335 0.926 0.876 1568 chr9 86592280 86603243 + 0 NA intron (NM_024945, intron 1 of 2) intron (NM_024945, intron 1 of 2) -2064 NM_031262 3190 Hs.522257 NM_002140 ENSG00000165119 HNRNPK AUKS|CSBP|HNRPK|TUNP heterogeneous nuclear ribonucleoprotein K protein-coding 1.971 0.793 1.868 2.806 4.938 2.119 2.028 1.166 6.442 3.472 1.799 3.252 6.397 2.767 1.148 1.932 1.502 2.313 1.133 1.127 1.975 0.865 607 chr17 19359665 19374765 + 0 NA Intergenic AluSp|SINE|Alu 52724 NM_007148 7732 Hs.189482 NM_007148 ENSG00000128482 RNF112 BFP|ZNF179 ring finger protein 112 protein-coding 0.259 0.025 0.085 2.487 0.573 0.061 0.099 0.048 0.084 0.203 0.054 0.094 0.314 0.117 0.098 1.709 2.118 0.040 0.022 0.081 3.223 0.038 813 chr19 49457287 49471940 + 0 NA TTS (NM_004324) TTS (NM_004324) -3953 NM_000146 2512 Hs.433670 NM_000146 ENSG00000087086 FTL LFTD|NBIA3 ferritin light chain protein-coding 4.404 1.132 2.379 0.971 1.803 2.823 1.913 1.042 3.627 3.524 0.514 1.743 6.877 3.111 0.796 1.122 1.014 1.888 1.318 2.077 0.817 1.545 42 chr1 40362494 40368793 + 0 NA 3' UTR (NM_005376, exon 2 of 2) 3' UTR (NM_005376, exon 2 of 2) 2044 NM_005376 4610 Hs.437922 NM_005376 ENSG00000116990 MYCL L-Myc|LMYC|MYCL1|bHLHe38 v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog protein-coding 0.743 0.354 0.156 8.829 0.486 0.290 0.368 0.314 0.471 1.047 0.165 0.538 1.440 0.245 0.379 1.241 1.120 0.025 0.040 0.268 5.333 0.046 644 chr17 40930696 40936800 + 0 NA intron (NM_032387, intron 1 of 18) intron (NM_032387, intron 1 of 18) 1099 NM_032387 65266 Hs.105448 NM_032387 ENSG00000126562 WNK4 PHA2B|PRKWNK4 WNK lysine deficient protein kinase 4 protein-coding 0.297 2.617 6.105 0.140 0.161 0.074 0.167 0.052 0.034 0.182 0.079 0.310 0.235 0.388 0.410 0.134 0.098 1.406 0.041 4.699 0.019 0.677 759 chr19 18413438 18416476 + 0 NA Intergenic Intergenic 19044 NM_012321 25804 Hs.515255 NM_012321 ENSG00000130520 LSM4 GRP|YER112W LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 2.556 1.898 10.755 0.451 1.220 2.683 4.677 0.659 1.096 0.217 0.081 3.295 0.738 1.213 2.214 0.101 0.161 7.773 1.681 4.027 0.078 2.176 851 chr2 62880254 62904493 + 0 NA Intergenic (GAAA)n|Simple_repeat|Simple_repeat -8613 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 0.159 0.072 0.575 0.143 0.295 0.132 0.163 2.206 5.885 0.453 0.113 0.427 0.314 0.187 0.120 0.045 0.045 0.473 0.010 0.138 0.057 0.955 399 chr13 111559533 111569248 + 0 NA intron (NR_104586, intron 1 of 4) intron (NR_104586, intron 1 of 4) 3064 NR_104586 55608 Hs.525163 NM_017664 ENSG00000088448 ANKRD10 - ankyrin repeat domain 10 protein-coding 2.996 1.517 1.585 1.420 3.115 0.832 2.770 0.909 3.671 2.327 1.102 5.007 4.270 2.291 1.319 1.097 0.763 1.139 1.566 2.460 0.937 1.452 1228 chr5 71746297 71773052 + 0 NA intron (NM_152625, intron 1 of 4) intron (NM_152625, intron 1 of 4) 43575 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DCSCRIPT zinc finger protein 366 protein-coding 0.099 0.287 0.399 0.565 0.136 0.131 1.081 1.568 3.129 0.212 0.051 0.238 0.126 0.544 0.175 0.059 0.054 1.328 0.059 0.536 0.914 0.396 1073 chr3 52078719 52092402 + 0 NA intron (NM_001947, intron 2 of 2) MIRb|SINE|MIR 4901 NM_001947 1849 Hs.591664 NM_001947 ENSG00000164086 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 0.493 1.674 0.526 0.907 7.699 0.240 1.792 0.805 1.854 4.209 1.070 7.075 3.082 1.186 0.643 0.602 0.391 2.939 0.710 3.149 0.420 0.975 235 chr11 36578376 36580970 + 0 NA Intergenic L1M2|LINE|L1 -9890 NM_000448 5896 Hs.73958 NM_000448 ENSG00000166349 RAG1 RAG-1|RNF74 recombination activating 1 protein-coding 0.902 0.095 0.217 0.824 22.741 0.010 0.295 0.030 0.188 1.041 2.698 0.580 3.506 0.174 0.267 0.601 0.586 0.030 0.300 0.453 0.069 694 chr17 69434481 69438276 + 0 NA Intergenic Intergenic -238058 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 3.366 0.359 6.540 0.085 2.592 0.102 4.672 1.138 1.973 1.630 0.252 1.384 0.507 1.179 1.714 0.020 0.098 2.097 1.839 0.487 0.150 3.220 436 chr14 68689956 68719179 + 0 NA intron (NM_001321809, intron 7 of 11) AluSc5|SINE|Alu 390937 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 0.883 0.649 0.596 0.135 0.795 0.177 2.254 1.820 5.123 0.717 0.211 0.774 0.343 0.375 0.667 0.064 0.200 1.467 0.415 1.429 0.277 1.008 1342 chr6 47152982 47157922 + 0 NA Intergenic Intergenic 122231 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 0.411 0.175 0.321 0.043 0.346 0.177 0.654 0.795 0.896 0.265 0.424 2.641 1.232 0.086 0.464 0.060 0.050 0.996 3.016 0.406 0.118 6.493 94 chr1 155900425 155912988 + 0 NA Intergenic AluSq|SINE|Alu -2473 NM_014949 22889 Hs.24656 NM_014949 ENSG00000132680 KIAA0907 BLOM7|SNORA80EHG KIAA0907 protein-coding 1.962 0.562 0.920 1.288 3.501 1.053 1.829 0.490 1.712 2.045 0.466 3.522 4.779 0.852 1.574 0.746 0.623 1.490 0.558 0.917 1.267 1.283 213 chr11 840535 847012 + 0 NA promoter-TSS (NM_001025234) promoter-TSS (NM_001025234) -308 NM_001025234 7106 Hs.654836 NM_003271 ENSG00000214063 TSPAN4 NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4 tetraspanin 4 protein-coding 3.750 2.864 5.067 0.957 3.841 5.552 6.253 1.127 6.085 3.414 0.684 8.054 2.325 3.262 3.070 0.688 0.543 6.609 1.519 2.652 0.444 1.038 816 chr19 50304979 50322661 + 0 NA intron (NM_001171937, intron 4 of 9) AluSx3|SINE|Alu 2747 NR_033269 80199 Hs.288800 NM_025129 ENSG00000010361 FUZ FY|NTD fuzzy planar cell polarity protein protein-coding 2.259 0.357 0.769 0.786 1.087 0.542 0.751 0.312 1.350 0.977 0.234 0.955 1.824 1.238 0.763 0.408 0.389 0.502 0.208 0.448 0.288 0.328 1103 chr3 146220009 146226050 + 0 NA Intergenic Intergenic -9251 NM_001199979 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 0.688 0.266 4.147 0.247 0.523 0.102 2.235 1.038 3.030 0.864 1.182 1.528 1.056 0.600 0.730 0.219 0.303 1.068 2.675 0.568 0.396 6.851 1450 chr7 113723598 113728953 + 0 NA promoter-TSS (NR_033766) promoter-TSS (NR_033766) -90 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 8.709 0.254 1.695 0.300 5.231 0.099 0.366 0.086 0.894 0.487 0.133 1.264 0.365 0.525 1.031 1.626 1.403 0.634 0.093 0.319 0.193 0.123 568 chr16 81037600 81042356 + 0 NA promoter-TSS (NM_018455) promoter-TSS (NM_018455) -125 NM_001270474 55839 Hs.726537 NM_018455 ENSG00000166451 CENPN BM039|C16orf60|CENP-N|ICEN32 centromere protein N protein-coding 3.374 1.161 6.214 4.468 9.156 4.091 3.354 1.380 6.103 5.786 1.579 4.898 7.622 2.791 2.378 2.066 1.441 1.853 3.258 2.175 2.207 2.016 1062 chr3 25465032 25474066 + 0 NA promoter-TSS (NM_000965) promoter-TSS (NM_000965) -205 NM_001290266 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 2.060 0.069 0.276 2.202 1.091 0.067 0.777 0.390 2.998 1.655 0.868 1.803 1.103 0.265 0.297 1.277 2.230 0.090 0.019 0.099 2.293 0.272 265 chr11 65147947 65159905 + 0 NA promoter-TSS (NM_031904) promoter-TSS (NM_031904) -115 NM_001300833 83786 Hs.578433 NM_031904 ENSG00000126391 FRMD8 FKSG44 FERM domain containing 8 protein-coding 2.207 0.682 2.449 1.019 4.016 1.742 2.973 0.747 2.358 0.801 1.106 3.815 4.824 1.608 1.976 0.717 0.728 1.756 1.661 0.905 0.693 1.209 296 chr11 129011894 129016447 + 0 NA intron (NM_001142685, intron 2 of 21) intron (NM_001142685, intron 2 of 21) 47923 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 1.136 2.311 0.863 0.563 1.195 0.650 2.089 0.990 3.574 0.571 0.145 2.652 0.215 0.508 1.259 0.026 1.108 6.277 7.223 0.429 1.391 1129 chr3 177237937 177276980 + 0 NA intron (NR_047568, intron 2 of 3) MER102a|DNA|hAT-Charlie 97749 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 0.917 0.041 0.193 2.421 0.822 0.057 0.339 0.405 0.600 1.293 0.502 0.774 1.152 0.055 0.197 0.499 0.926 0.069 0.022 0.071 3.678 0.530 791 chr19 41828246 41834003 + 0 NA TTS (NM_052848) TTS (NM_052848) 14739 NM_001346100 90324 Hs.437497 NM_052848 ENSG00000142039 CCDC97 - coiled-coil domain containing 97 protein-coding 4.629 1.166 2.799 0.277 1.294 1.723 4.548 0.289 1.047 0.906 0.292 1.895 1.197 2.518 3.043 0.228 0.169 1.535 1.508 2.036 0.138 1.623 171 chr10 22213728 22221897 + 0 NA intron (NM_022365, intron 2 of 11) intron (NM_022365, intron 2 of 11) 74838 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 0.143 0.455 0.114 0.065 0.826 0.121 0.248 1.270 7.408 0.352 0.116 0.300 0.192 0.085 0.115 0.029 0.045 0.321 0.020 1.193 0.028 0.221 1143 chr3 185755612 185791839 + 0 NA intron (NM_004454, intron 11 of 12) intron (NM_004454, intron 11 of 12) 53176 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 0.236 0.021 0.164 6.872 nan 0.084 0.146 0.020 0.080 0.303 0.078 0.266 0.682 0.112 0.214 0.710 0.945 0.037 0.014 0.044 4.464 0.094 1355 chr6 100918505 100933807 + 0 NA Intergenic Intergenic -14605 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 single-minded family bHLH transcription factor 1 protein-coding 0.167 0.090 0.122 0.077 0.140 0.095 0.373 0.859 3.950 0.199 0.011 0.180 0.052 0.168 0.279 0.098 0.160 0.218 0.085 0.144 0.134 0.086 386 chr13 73628756 73671397 + 0 NA 3' UTR (NM_001286818, exon 4 of 4) 3' UTR (NM_001286818, exon 4 of 4) 17146 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 2.944 0.346 0.530 0.522 6.488 0.494 0.178 0.174 0.731 2.469 0.445 2.593 3.037 0.344 0.444 0.610 0.734 0.484 0.223 0.681 0.703 0.465 916 chr2 213392629 213404047 + 0 NA intron (NM_005235, intron 1 of 27) intron (NM_005235, intron 1 of 27) 5014 NM_001042599 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 0.354 0.043 0.155 0.702 6.832 0.053 0.177 0.014 0.071 0.100 0.113 0.283 0.258 0.083 0.970 0.762 0.024 0.011 0.010 0.401 0.072 1457 chr7 148822280 148825881 + 0 NA promoter-TSS (NM_001001661) promoter-TSS (NM_001001661) 572 NM_020781 57541 Hs.632032 NM_020781 ENSG00000197024 ZNF398 P51|P71|ZER6 zinc finger protein 398 protein-coding 8.409 2.534 5.850 4.176 12.688 5.679 4.591 1.389 7.153 9.029 3.592 8.275 8.484 8.937 4.584 2.704 1.351 4.055 2.538 3.722 1.871 2.178 445 chr14 89790738 89809730 + 0 NA intron (NM_001085471, intron 3 of 6) L1MA9|LINE|L1 83220 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 0.236 0.020 0.161 1.971 0.253 0.199 0.049 0.025 0.097 0.274 0.119 0.258 1.186 0.070 0.120 0.914 1.218 0.063 0.004 0.012 4.460 0.035 200 chr10 114759476 114780415 + 0 NA intron (NM_001198531, intron 4 of 12) intron (NM_001198531, intron 4 of 12) -35169 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 0.219 0.024 0.158 2.293 0.355 0.113 0.160 0.016 0.050 0.213 0.031 0.251 0.261 0.121 0.080 0.516 0.626 0.036 0.012 0.026 2.871 0.085 1339 chr6 45590968 45596719 + 0 NA Intergenic Intergenic 203529 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 0.151 0.495 0.150 0.074 0.073 0.030 1.705 2.014 6.497 0.206 0.054 0.247 0.290 0.451 0.455 0.041 0.063 0.779 0.014 0.900 0.080 0.164 1261 chr5 150992469 151031867 + 0 NA Intergenic Intergenic -44338 NR_109873 101927096 Hs.571023 NR_109873 ENSG00000249035 CTB-113P19.1 - uncharacterized LOC101927096 ncRNA 0.150 0.057 0.217 0.152 4.057 0.058 0.110 0.168 0.394 2.956 2.331 2.122 4.964 0.114 0.074 0.053 0.052 0.034 0.012 0.054 0.067 0.086 1352 chr6 100619555 100636719 + 0 NA Intergenic Intergenic -186023 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 0.227 0.115 0.128 0.187 0.312 0.107 0.856 0.806 3.606 0.103 0.014 0.571 0.107 0.337 0.610 0.023 0.065 0.197 0.159 0.162 0.040 0.094 329 chr12 29532631 29535507 + 0 NA promoter-TSS (NM_016570) promoter-TSS (NM_016570) 74 NM_016570 51290 Hs.339453 NM_016570 ENSG00000087502 ERGIC2 CDA14|Erv41|PTX1|cd002 ERGIC and golgi 2 protein-coding 4.814 0.775 3.158 2.416 7.708 1.504 4.744 0.621 2.725 6.116 1.977 5.369 8.130 1.531 5.623 1.273 1.619 3.241 2.597 1.388 1.285 1.511 525 chr16 2197373 2214674 + 0 NA promoter-TSS (NR_132114) promoter-TSS (NR_132114) 224 NM_032271 84231 Hs.713632 NM_032271 ENSG00000131653 TRAF7 RFWD1|RNF119 TNF receptor associated factor 7 protein-coding 2.568 0.988 1.826 2.608 5.004 1.639 3.359 0.300 1.684 3.253 1.332 8.733 4.112 1.329 1.285 1.542 1.056 1.182 1.125 1.365 1.550 0.785 1621 chrX 10577056 10589162 + 0 NA intron (NM_033290, intron 1 of 9) intron (NM_033290, intron 1 of 9) 5565 NM_033289 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 1.247 0.297 1.019 4.533 2.020 1.577 1.302 0.327 1.484 1.214 0.152 1.206 1.798 1.900 0.489 0.510 0.540 0.703 0.544 0.560 3.177 0.684 27 chr1 26447492 26454770 + 0 NA 3' UTR (NM_001243533, exon 4 of 4) 3' UTR (NM_001243533, exon 4 of 4) 12863 NM_152835 149420 Hs.468801 NM_152835 ENSG00000175087 PDIK1L CLIK1L|STK35L2 PDLIM1 interacting kinase 1 like protein-coding 2.574 0.982 0.970 0.514 0.964 2.613 3.289 0.377 0.966 1.028 0.238 1.659 6.950 1.366 1.515 0.106 0.302 3.750 1.761 2.275 0.331 3.369 787 chr19 40474473 40478097 + 0 NA promoter-TSS (NM_006503) promoter-TSS (NM_006503) -627 NM_153001 5704 Hs.211594 NM_006503 ENSG00000013275 PSMC4 MIP224|RPT3|S6|TBP-7|TBP7 proteasome 26S subunit, ATPase 4 protein-coding 2.466 1.059 15.295 2.138 2.876 1.430 7.771 1.002 4.557 3.195 1.504 2.988 7.471 2.580 0.898 0.738 0.735 0.860 0.780 1.291 1.205 0.469 1561 chr9 35903035 35926910 + 0 NA Intergenic AluY|SINE|Alu 5492 NR_024283 158376 Hs.302677 NR_024283 ENSG00000235387 LINC00961 SPAR long intergenic non-protein coding RNA 961 ncRNA 0.495 0.213 1.537 0.636 0.312 0.719 0.721 0.597 1.928 0.984 1.199 0.363 5.628 0.914 0.959 0.066 0.076 1.596 0.188 0.487 0.306 0.253 161 chr10 3844899 3873725 + 0 NA Intergenic Intergenic -16830 NR_134490 105376365 Hs.460114 NR_134490 ENSG00000230573 LOC105376365 - uncharacterized LOC105376365 ncRNA 1.653 0.481 2.300 0.067 0.466 0.932 1.350 2.800 7.696 0.470 0.176 1.121 0.295 0.590 0.935 0.068 0.113 3.227 1.344 1.099 0.052 2.815 582 chr16 89568368 89575973 + 0 NA Intergenic Intergenic -2626 NM_003119 6687 Hs.185597 NM_003119 ENSG00000197912 SPG7 CAR|CMAR|PGN|SPG5C SPG7, paraplegin matrix AAA peptidase subunit protein-coding 2.935 0.974 3.298 1.043 3.747 3.306 4.526 0.978 3.443 3.292 1.302 6.246 3.467 1.667 1.572 1.735 0.768 1.516 1.265 1.239 0.467 1.563 1310 chr6 24654671 24670030 + 0 NA intron (NM_016614, intron 2 of 6) LTR5B|LTR|ERVK 4765 NM_016614 51567 Hs.403010 NM_016614 ENSG00000111802 TDP2 AD022|EAP2|EAPII|TTRAP|dJ30M3.3|hTDP2 tyrosyl-DNA phosphodiesterase 2 protein-coding 3.012 0.347 1.273 1.191 1.388 1.184 1.052 0.359 1.424 1.812 0.501 0.646 9.961 1.163 0.569 0.503 0.496 0.503 0.262 0.551 0.826 0.436 109 chr1 167236886 167242857 + 0 NA intron (NM_002697, intron 1 of 15) intron (NM_002697, intron 1 of 15) 49748 NR_037163 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 0.318 0.041 0.127 0.270 0.355 0.190 0.125 0.065 0.253 0.375 0.056 0.395 0.435 0.129 0.159 2.031 3.451 0.135 0.021 0.150 0.560 0.315 557 chr16 67558201 67565076 + 0 NA intron (NR_104656, intron 1 of 1) AluY|SINE|Alu 1010 NR_104656 100505942 Hs.121233 NR_104656 LOC100505942 - uncharacterized LOC100505942 ncRNA 1.652 3.512 1.459 0.715 1.703 1.309 1.789 2.021 6.159 1.460 0.271 1.507 1.579 1.335 0.714 0.580 0.629 2.837 0.946 6.296 0.134 1.358 718 chr18 3445131 3459786 + 0 NA intron (NM_170695, intron 1 of 2) intron (NM_170695, intron 1 of 2) 1055 NM_173210 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 4.546 2.076 2.438 6.379 11.996 2.667 5.235 1.451 6.992 5.706 3.224 5.239 14.627 3.509 2.543 3.691 3.274 7.245 2.537 4.241 5.046 3.643 1581 chr9 110246060 110253479 + 0 NA exon (NM_001314052, exon 3 of 4) exon (NM_001314052, exon 3 of 4) 2232 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 0.974 0.484 5.033 4.709 1.484 1.629 1.873 0.296 1.169 2.782 0.657 2.824 2.279 0.594 0.503 4.202 3.208 1.030 0.779 0.554 4.076 0.865 1604 chr9 135933138 135945367 + 0 NA intron (NM_001807, intron 1 of 10) intron (NM_001807, intron 1 of 10) 1887 NM_001807 1056 Hs.533258 NM_001807 ENSG00000170835 CEL BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8 carboxyl ester lipase protein-coding 0.113 0.071 0.251 0.081 0.521 0.056 0.098 0.057 0.063 0.509 0.532 3.678 1.738 0.063 0.126 0.097 0.100 0.029 0.017 0.127 0.019 0.062 1507 chr8 103664104 103675655 + 0 NA Intergenic Intergenic -1749 NM_005655 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 1.765 0.481 2.803 1.090 3.946 1.569 5.497 0.825 2.626 3.478 1.629 5.515 5.402 2.344 1.847 1.465 0.935 1.602 2.321 0.759 1.035 0.581 1239 chr5 127168319 127171902 + 0 NA intron (NM_001317938, intron 5 of 6) MER34A1|LTR|ERV1 131029 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 0.151 0.035 7.110 0.160 0.311 0.084 0.079 0.021 0.075 0.207 0.069 0.396 0.155 0.213 0.117 0.064 0.171 0.019 0.023 0.038 0.129 0.026 441 chr14 69240827 69264575 + 0 NA Intergenic Intergenic 7930 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 1.964 1.533 4.643 0.896 4.748 1.403 4.269 1.571 5.933 2.970 0.758 3.890 4.772 1.484 2.155 0.887 0.919 5.185 2.522 3.029 1.274 2.617 868 chr2 103618280 103635509 + 0 NA Intergenic Intergenic -26007 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 0.226 0.022 0.104 19.591 0.208 0.076 0.076 0.028 0.076 0.245 0.177 0.286 0.338 0.098 0.127 1.531 2.797 0.020 0.010 0.046 20.570 0.044 672 chr17 48609248 48622094 + 0 NA intron (NM_017957, intron 3 of 9) intron (NM_017957, intron 3 of 9) 444 NR_135675 105371824 Hs.683630 NR_135675 ENSG00000250286 LOC105371824 - uncharacterized LOC105371824 ncRNA 3.772 0.174 0.587 0.608 1.960 0.548 1.456 0.392 0.686 1.437 1.591 4.740 4.320 0.223 0.937 0.720 0.791 0.248 0.687 0.138 0.321 0.714 1140 chr3 184031265 184039263 + 0 NA exon (NM_198241, exon 5 of 33) exon (NM_198241, exon 5 of 33) 2312 NM_182917 1981 Hs.433750 NM_004953 ENSG00000114867 EIF4G1 EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18 eukaryotic translation initiation factor 4 gamma 1 protein-coding 1.565 1.378 1.845 5.637 nan 1.470 3.663 1.042 4.207 4.687 1.603 6.912 11.960 1.466 1.235 2.481 1.361 2.755 1.741 1.783 3.264 2.430 769 chr19 35485237 35498722 + 0 NA intron (NM_001136199, intron 1 of 17) CpG 755 NM_001320035 57655 Hs.515351 NM_020895 ENSG00000089351 GRAMD1A KIAA1533 GRAM domain containing 1A protein-coding 2.834 0.606 2.216 0.769 0.658 1.336 5.774 0.336 0.641 0.892 0.391 1.619 1.566 1.076 1.237 0.481 0.378 0.953 0.130 0.829 0.677 0.259 1556 chr9 16867863 16872374 + 0 NA intron (NM_001317940, intron 1 of 5) intron (NM_001317940, intron 1 of 5) 668 NM_017637 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 0.165 3.046 0.999 0.379 0.411 0.151 0.062 0.332 0.945 0.369 0.072 0.106 0.648 1.177 0.503 0.690 0.508 1.286 0.010 4.115 0.077 1181 chr4 87844406 87851075 + 0 NA intron (NR_038841, intron 2 of 2) LTR32|LTR|ERVL 8262 NR_038841 100506746 Hs.657766 NR_038841 ENSG00000163633 LOC100506746 - uncharacterized LOC100506746 ncRNA 0.903 2.877 0.080 0.082 0.431 0.447 0.483 0.256 0.805 0.543 0.071 0.524 1.692 0.537 0.109 0.047 0.071 1.991 0.521 7.251 0.052 2.268 275 chr11 67230875 67237532 + 0 NA intron (NR_073412, intron 4 of 6) intron (NR_073412, intron 4 of 6) 2545 NR_073409 80194 Hs.288761 NM_025124 ENSG00000172663 TMEM134 - transmembrane protein 134 protein-coding 3.464 1.023 1.725 1.687 4.493 1.213 3.434 1.009 3.318 3.670 1.080 6.665 6.223 2.743 2.256 1.418 0.850 1.414 2.013 2.017 0.764 3.065 983 chr20 52236541 52260686 + 0 NA intron (NR_134576, intron 2 of 2) intron (NR_134576, intron 2 of 2) 23720 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 1.924 0.564 2.199 0.815 0.833 0.655 2.274 1.257 3.878 1.154 0.928 2.041 3.384 1.071 0.937 0.210 0.336 3.067 1.571 1.351 1.190 2.024 803 chr19 45942193 45960365 + 0 NA Intergenic AluSx|SINE|Alu 11367 NR_106736 102464836 NR_106736 ENSG00000275726 MIR6088 hsa-mir-6088 microRNA 6088 ncRNA 2.111 0.353 0.628 0.353 3.196 0.378 0.503 0.353 0.759 2.050 0.925 2.236 5.395 0.958 0.482 0.230 0.139 0.351 0.416 0.552 0.152 0.437 197 chr10 112152304 112188150 + 0 NA Intergenic Intergenic -87398 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 1.815 0.424 0.382 0.087 1.272 0.736 1.075 0.250 0.445 0.344 0.531 2.100 3.461 0.608 0.805 0.091 0.116 2.943 0.888 0.830 0.079 1.903 853 chr2 70171583 70177046 + 0 NA Intergenic Intergenic 15083 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase, retroviral-like 1 protein-coding 9.012 0.068 1.025 0.204 0.333 0.223 2.134 0.043 0.102 1.480 0.666 3.701 1.154 0.153 1.746 0.142 0.188 1.765 2.073 0.061 0.084 1.296 751 chr19 13226151 13230467 + 0 NA promoter-TSS (NM_052876) promoter-TSS (NM_052876) -746 NM_001136035 55621 Hs.515169 NM_017722 ENSG00000104907 TRMT1 TRM1 tRNA methyltransferase 1 protein-coding 2.131 1.033 2.903 2.710 4.802 1.114 5.950 0.972 3.586 7.148 5.101 3.867 6.311 2.083 1.016 1.495 1.399 2.291 1.854 1.271 1.624 0.982 1500 chr8 80737769 80743663 + 0 NA intron (NR_110954, intron 2 of 5) intron (NR_110954, intron 2 of 5) 43256 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 0.122 0.021 0.215 0.109 0.420 0.052 0.063 0.014 0.061 0.409 1.219 9.238 3.567 0.070 0.082 1.636 2.603 0.023 0.036 0.057 0.312 0.081 60 chr1 78466349 78476738 + 0 NA intron (NM_001317103, intron 1 of 1) intron (NM_001317103, intron 1 of 1) 1031 NM_001317103 11080 Hs.13852 NM_007034 ENSG00000162616 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ heat shock protein family (Hsp40) member B4 protein-coding 1.853 0.703 0.492 0.782 2.874 2.025 1.149 0.559 2.289 1.256 0.271 1.109 8.883 1.236 0.383 0.223 0.726 0.594 0.215 2.136 0.810 0.136 1245 chr5 133982792 133985977 + 0 NA promoter-TSS (NM_021982) promoter-TSS (NM_021982) -91 NM_001252231 10802 Hs.595540 NM_021982 ENSG00000113615 SEC24A - SEC24 homolog A, COPII coat complex component protein-coding 2.409 1.633 8.031 6.593 5.786 3.298 7.809 1.489 8.060 4.017 1.033 4.592 6.997 5.820 1.899 1.319 1.335 4.752 4.215 2.964 5.903 2.877 1400 chr7 27128802 27158128 + 0 NA Intergenic CpG -1071 NM_006735 3199 Hs.445239 NM_006735 ENSG00000105996 HOXA2 HOX1K|MCOHI homeobox A2 protein-coding 1.234 3.657 1.441 1.233 2.602 0.589 2.530 0.003 0.061 0.765 0.599 2.405 0.909 0.236 1.343 0.967 1.104 0.124 0.966 7.261 2.007 2.287 1067 chr3 46523758 46545719 + 0 NA Intergenic LTR73|LTR|ERV1 -4747 NM_031440 83597 Hs.196584 NM_031440 ENSG00000163825 RTP3 LTM1|TMEM7|Z3CXXC3 receptor transporter protein 3 protein-coding 0.189 1.110 0.118 0.088 0.256 0.030 0.219 1.752 3.398 0.236 0.051 0.273 0.148 0.638 0.090 0.078 0.088 0.404 0.019 2.841 0.016 0.162 691 chr17 66373406 66382161 + 0 NA intron (NM_001267727, intron 8 of 11) intron (NM_001267727, intron 8 of 11) -31981 NM_001278433 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 0.402 0.170 0.459 0.220 0.255 3.778 0.326 0.127 0.375 0.321 0.055 0.436 0.244 0.555 0.273 0.411 0.344 0.077 0.092 0.290 0.231 0.398 1388 chr7 7720841 7732313 + 0 NA intron (NM_002947, intron 3 of 7) MLT1J|LTR|ERVL-MaLR 31661 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 0.341 0.086 0.234 5.577 0.450 0.033 0.388 0.255 0.538 0.316 0.036 0.264 0.186 0.223 0.163 0.803 1.649 0.238 0.020 0.077 3.619 0.167 346 chr12 57022136 57030991 + 0 NA intron (NM_013449, intron 1 of 28) intron (NM_013449, intron 1 of 28) -2448 NM_001300905 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding 2.062 2.182 2.833 2.342 5.310 2.187 2.931 0.966 4.147 2.705 1.048 4.989 7.478 4.509 1.864 1.702 1.257 2.367 1.598 3.388 1.196 2.488 911 chr2 208026767 208032624 + 0 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) 1045 NM_003709 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 4.545 1.291 2.824 2.775 3.999 0.577 6.483 2.205 8.806 4.774 1.650 5.196 6.243 6.661 3.021 2.202 1.717 3.774 1.806 2.382 1.889 2.223 1295 chr6 14740722 14746674 + 0 NA Intergenic Intergenic -458013 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 1.270 0.625 1.718 0.056 2.140 1.297 3.275 2.027 5.330 1.861 0.785 1.143 3.670 1.130 1.463 0.051 0.102 6.189 5.903 2.112 0.077 5.323 427 chr14 61977044 62006928 + 0 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 44926 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 1.186 0.385 0.570 0.549 0.762 0.456 1.224 0.675 1.183 1.016 0.765 4.362 0.984 0.156 0.920 0.230 0.336 0.667 5.236 0.738 0.162 1.871 1111 chr3 156528065 156545398 + 0 NA Intergenic Intergenic -1880 NR_038387 730091 Hs.659905 NR_038387 ENSG00000240875 LINC00886 - long intergenic non-protein coding RNA 886 ncRNA 1.066 0.468 2.102 1.641 5.027 1.185 2.182 2.509 4.723 3.494 2.544 3.919 1.798 1.542 1.205 2.041 2.383 2.915 0.931 0.726 1.754 2.223 677 chr17 55989192 56033605 + 0 NA intron (NM_001271875, intron 1 of 10) AluJb|SINE|Alu 21286 NM_001271875 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 0.853 0.273 1.502 0.727 0.600 1.316 2.772 0.324 0.674 0.552 0.613 1.681 0.957 1.618 1.105 0.159 0.142 2.019 0.565 0.447 0.568 1.168 907 chr2 201979097 202005097 + 0 NA intron (NM_001127183, intron 1 of 9) intron (NM_001127183, intron 1 of 9) -2355 NM_001308042 8837 Hs.390736 NM_003879 ENSG00000003402 CFLAR CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS CASP8 and FADD like apoptosis regulator protein-coding 0.805 1.105 3.062 0.868 1.915 1.315 5.840 0.764 2.308 0.739 0.298 1.951 2.063 2.314 1.470 0.664 0.589 2.830 0.460 2.588 0.814 4.303 82 chr1 151161035 151174927 + 0 NA Intergenic Intergenic -3039 NM_001330689 8394 Hs.655131 NM_003557 ENSG00000143398 PIP5K1A - phosphatidylinositol-4-phosphate 5-kinase type 1 alpha protein-coding 3.344 1.628 1.313 2.148 6.189 1.946 2.609 1.144 9.038 3.511 0.770 4.076 6.804 3.097 2.164 2.631 3.080 4.373 1.344 3.962 0.889 2.464 650 chr17 41607148 41634639 + 0 NA intron (NM_001322219, intron 23 of 23) intron (NM_001322219, intron 23 of 23) 2412 NM_001986 2118 Hs.434059 NM_001986 ENSG00000175832 ETV4 E1A-F|E1AF|PEA3|PEAS3 ETS variant 4 protein-coding 0.769 0.203 0.903 0.268 1.064 0.729 0.256 0.043 0.099 1.082 0.851 2.202 4.083 0.159 0.436 0.813 0.728 0.729 0.359 0.300 0.438 0.209 1154 chr3 189712147 189743671 + 0 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) -110844 NR_126419 101929152 NR_126419 ENSG00000225764 P3H2-AS1 LEPREL1-AS1 P3H2 antisense RNA 1 ncRNA 0.322 0.373 0.370 0.153 nan 0.194 0.998 0.887 2.961 0.600 0.184 0.975 0.525 0.238 0.225 0.033 0.050 1.551 0.630 0.995 0.055 1.228 1210 chr5 10511778 10528714 + 0 NA intron (NR_134289, intron 1 of 2) MIR|SINE|MIR 1950 NR_134289 389273 Hs.519206 NR_134289 ENSG00000249160 LOC389273 - uncharacterized LOC389273 ncRNA 0.200 0.358 0.154 0.076 0.403 0.193 0.362 0.885 3.760 0.450 0.211 0.409 0.355 0.156 0.191 0.119 0.164 0.828 0.022 0.614 0.041 0.093 590 chr17 7209150 7212290 + 0 NA promoter-TSS (NM_001143761) promoter-TSS (NM_001143761) -136 NM_001970 1984 Hs.534314 NM_001970 ENSG00000132507 EIF5A EIF-5A|EIF5A1|eIF5AI eukaryotic translation initiation factor 5A protein-coding 4.317 2.123 4.700 4.846 8.808 3.619 6.908 1.660 7.960 8.168 2.402 8.535 6.474 2.696 6.191 3.655 1.649 3.590 3.568 4.093 3.007 1.401 895 chr2 178074407 178080809 + 0 NA TTS (NR_049831) TTS (NR_049831) 154 NR_039646 100616394 NR_039646 ENSG00000170144 MIR4444-1 MIR4444|hsa-mir-4444-1 microRNA 4444-1 ncRNA 2.960 1.108 3.387 3.966 7.658 2.759 6.164 0.755 4.246 7.312 1.159 4.821 13.379 2.231 3.198 2.021 1.741 2.298 1.457 2.136 3.126 2.207 69 chr1 94781051 94801601 + 0 NA Intergenic Intergenic -78010 NM_001328664 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 0.673 0.434 2.789 0.052 0.272 0.085 4.604 0.595 1.967 0.239 0.289 0.714 0.788 0.617 0.912 0.011 0.006 4.893 1.930 1.084 0.033 6.670 1157 chr3 193921298 193932936 + 0 NA intron (NR_125403, intron 1 of 2) AluSz|SINE|Alu -3021 NR_125404 100505920 Hs.436654 NR_125403 ENSG00000225742 LINC02036 - long intergenic non-protein coding RNA 2036 ncRNA 0.329 0.021 0.336 5.217 1.068 0.396 0.079 0.040 0.094 0.767 0.414 0.622 nan 0.102 0.108 1.309 1.641 0.093 0.025 0.080 4.305 0.092 664 chr17 46701486 46704994 + 0 NA exon (NM_024017, exon 1 of 2) exon (NM_024017, exon 1 of 2) 595 NM_024017 3219 Hs.463350 NM_024017 ENSG00000170689 HOXB9 HOX-2.5|HOX2|HOX2E homeobox B9 protein-coding 0.886 1.165 1.476 3.390 1.526 3.145 2.508 0.179 0.376 1.061 1.916 4.317 3.499 0.577 2.398 6.398 5.340 0.329 0.345 1.206 3.749 0.080 1470 chr8 27748057 27756295 + 0 NA intron (NM_173833, intron 7 of 8) intron (NM_173833, intron 7 of 8) -8543 NR_036249 100422828 NR_036249 ENSG00000265847 MIR4287 - microRNA 4287 ncRNA 0.174 0.135 0.071 0.066 0.204 3.194 0.168 0.048 0.059 0.125 0.060 0.268 0.231 0.101 0.064 0.192 0.238 0.099 0.082 0.163 0.155 0.011 224 chr11 12819326 12826053 + 0 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 126720 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 0.617 0.663 1.532 0.223 2.005 2.992 1.299 0.194 0.542 1.037 0.327 1.735 0.599 0.807 0.696 0.140 0.365 0.470 1.220 2.302 0.221 1.619 79 chr1 151029949 151038855 + 0 NA intron (NM_006818, intron 1 of 1) intron (NM_006818, intron 1 of 1) 2251 NM_006818 10962 Hs.75823 NM_006818 ENSG00000213190 MLLT11 AF1Q myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11 protein-coding 2.311 0.987 0.855 2.401 2.524 1.751 1.028 0.753 2.114 4.838 0.980 5.557 9.138 1.328 1.439 2.785 2.553 1.155 0.443 1.476 2.180 0.723 617 chr17 27907597 27921624 + 0 NA intron (NM_001085454, intron 1 of 20) intron (NM_001085454, intron 1 of 20) 2000 NM_001085454 28964 Hs.514051 NM_014030 ENSG00000108262 GIT1 - GIT ArfGAP 1 protein-coding 2.524 0.759 1.334 1.413 3.454 0.334 1.710 0.277 1.132 1.368 1.337 4.518 3.041 0.952 0.340 2.129 1.497 0.522 0.157 1.017 0.731 0.342 1420 chr7 73114013 73134409 + 0 NA intron (NM_001165903, intron 1 of 9) intron (NM_001165903, intron 1 of 9) -1436 NR_036247 100422948 NR_036247 ENSG00000265724 MIR4284 mir-4284 microRNA 4284 ncRNA 5.590 0.273 8.634 0.140 1.103 0.871 2.402 0.136 0.288 0.546 0.252 5.515 1.438 0.950 2.126 0.210 0.116 2.427 3.207 0.464 0.062 0.689 352 chr12 58807079 58821160 + 0 NA Intergenic Intergenic -171365 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 1.334 0.396 1.814 1.093 2.005 0.749 2.709 0.420 2.076 1.195 1.713 3.822 1.907 0.666 1.028 0.344 0.512 1.074 2.545 1.224 0.718 1.426 1006 chr21 36162515 36188406 + 0 NA intron (NM_001001890, intron 4 of 5) intron (NM_001001890, intron 4 of 5) 57338 NR_038885 100506385 Hs.120179 NR_038885 ENSG00000234380 LINC01426 lincRNA-uc002yug.2 long intergenic non-protein coding RNA 1426 ncRNA 0.939 0.694 0.670 4.447 0.982 0.562 1.100 0.210 0.609 0.758 0.623 1.586 1.827 0.908 0.716 0.861 1.029 0.936 0.514 1.645 4.830 0.519 126 chr1 213740508 213749430 + 0 NA Intergenic Intergenic -353123 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 0.257 0.044 3.344 0.111 0.051 0.052 0.034 0.177 0.018 0.169 0.122 0.078 0.197 0.835 1.667 0.008 0.010 0.025 7.013 0.053 1594 chr9 127413153 127424097 + 0 NA intron (NM_033334, intron 2 of 9) MSTB1|LTR|ERVL-MaLR -2090 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 1.637 0.981 2.191 2.159 2.320 1.407 1.826 1.421 6.730 1.629 0.190 1.933 0.803 1.118 0.875 0.543 1.241 2.653 1.601 2.153 2.397 1.691 1034 chr22 35270352 35277855 + 0 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 119802 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 0.178 0.097 0.057 0.075 0.031 0.050 1.818 4.122 0.211 0.088 0.083 0.046 0.056 0.010 0.017 0.006 0.029 0.076 0.012 251 chr11 62553337 62560124 + 0 NA promoter-TSS (NR_106806) promoter-TSS (NR_106806) -557 NR_106806 102465448 NR_106806 ENSG00000185475 MIR6748 hsa-mir-6748 microRNA 6748 ncRNA 2.940 0.988 1.966 3.853 6.564 1.956 3.501 0.824 3.290 3.147 1.157 5.865 7.221 2.822 2.123 1.974 1.519 1.662 2.011 1.376 2.169 1.301 426 chr14 61112665 61125317 + 0 NA Intergenic Intergenic -2836 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 2.357 0.196 0.659 0.518 2.174 0.572 0.589 1.129 5.145 1.016 0.417 2.910 1.272 0.262 2.102 0.728 0.612 0.552 0.526 0.254 0.173 0.345 369 chr12 112034439 112039769 + 0 NA non-coding (NR_132311, exon 1 of 24) non-coding (NR_132311, exon 1 of 24) 373 NM_001310123 6311 Hs.76253 NM_002973 ENSG00000204842 ATXN2 ATX2|SCA2|TNRC13 ataxin 2 protein-coding 3.340 1.975 2.227 4.773 11.220 3.578 4.418 1.181 4.461 3.839 1.525 9.191 10.025 4.057 3.162 3.252 2.402 4.640 3.279 3.084 2.805 3.945 996 chr20 62368459 62373813 + 0 NA promoter-TSS (NM_020062) promoter-TSS (NM_020062) -75 NM_020062 56731 Hs.435126 NM_020062 ENSG00000125520 SLC2A4RG GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19 SLC2A4 regulator protein-coding 2.140 1.179 1.569 0.739 5.206 1.038 3.275 1.055 2.995 1.996 1.324 8.945 4.328 2.788 1.744 0.831 0.572 1.858 1.339 1.109 0.323 0.402 1533 chr8 145059022 145066155 + 0 NA Intergenic AluSx|SINE|Alu -1638 NM_000837 2907 Hs.594634 NM_000837 ENSG00000178719 GRINA HNRGW|LFG1|NMDARA1|TMBIM3 glutamate ionotropic receptor NMDA type subunit associated protein 1 protein-coding 0.871 0.885 1.315 1.680 7.284 0.831 12.040 1.367 4.818 1.678 1.054 3.744 2.855 1.524 1.907 0.625 0.562 0.798 0.997 1.110 0.742 0.434 1548 chr9 3521780 3528999 + 0 NA intron (NM_134428, intron 1 of 17) intron (NM_134428, intron 1 of 17) 612 NM_001282116 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 2.502 1.081 2.213 5.672 6.264 1.006 1.234 0.674 3.455 2.191 1.114 8.809 8.923 2.492 2.166 2.568 2.500 1.877 0.628 1.468 4.169 0.381 1435 chr7 91504268 91510741 + 0 NA intron (NM_001301135, intron 2 of 3) intron (NM_001301135, intron 2 of 3) 2530 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 1.162 0.249 0.826 3.285 2.190 0.222 1.187 0.278 1.466 0.919 1.050 3.480 6.599 1.179 0.419 2.158 3.577 0.440 0.492 0.344 4.756 0.234 279 chr11 78506579 78514718 + 0 NA intron (NM_001098816, intron 15 of 33) MIRb|SINE|MIR -224739 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 0.537 0.213 0.396 0.276 0.147 0.157 3.603 0.010 0.042 0.127 0.078 0.603 0.295 0.061 3.401 0.009 0.045 0.200 0.484 0.408 0.068 0.080 651 chr17 42275139 42278677 + 0 NA Intergenic CpG -1379 NM_001098833 56970 Hs.512651 NM_020218 ENSG00000087152 ATXN7L3 - ataxin 7 like 3 protein-coding 5.353 2.485 5.797 4.816 7.370 2.362 8.098 0.731 4.569 7.740 3.570 12.343 13.451 2.198 2.773 4.470 2.433 4.738 3.139 3.085 3.375 3.021 176 chr10 34986747 35037961 + 0 NA intron (NM_001184785, intron 1 of 24) intron (NM_001184785, intron 1 of 24) 91899 NM_001184791 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.580 0.204 0.731 0.116 0.556 0.455 0.332 0.150 0.584 0.520 0.256 0.680 1.871 0.133 0.371 0.058 0.081 0.503 0.139 0.357 0.043 0.940 956 chr20 34454062 34473398 + 0 NA intron (NM_016436, intron 9 of 17) intron (NM_016436, intron 9 of 17) 78818 NM_033630 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 0.417 0.822 0.937 0.417 4.611 2.498 1.143 0.415 1.203 0.782 0.312 1.460 1.000 1.681 0.803 0.067 0.088 2.739 0.024 2.172 0.202 0.460 483 chr15 67355125 67445740 + 0 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) -17622 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 1.356 1.867 2.609 0.571 1.546 1.193 2.983 0.523 1.048 0.641 0.518 3.136 2.286 0.892 1.265 0.233 0.217 2.558 2.747 4.089 0.375 0.933 498 chr15 78339981 78345382 + 0 NA intron (NM_144572, intron 2 of 12) intron (NM_144572, intron 2 of 12) 27313 NM_144572 23102 Hs.567426 NM_015079 ENSG00000167202 TBC1D2B - TBC1 domain family member 2B protein-coding 0.215 2.613 0.228 0.198 0.281 0.787 0.170 0.044 0.101 0.353 0.029 0.248 0.110 0.131 0.135 0.043 0.092 0.025 0.031 4.546 0.032 0.138 629 chr17 36855976 36863287 + 0 NA Intergenic CpG -1047 NR_039887 100616203 NR_039887 ENSG00000275238 MIR4734 mir-4734 microRNA 4734 ncRNA 3.397 1.156 1.989 5.132 5.662 4.093 10.622 0.586 2.176 3.027 2.643 5.292 7.138 2.256 1.863 4.496 3.254 2.092 0.672 1.215 3.505 2.878 947 chr20 30326091 30329882 + 0 NA intron (NM_012112, intron 1 of 17) intron (NM_012112, intron 1 of 17) 1082 NM_012112 22974 Hs.244580 NM_012112 ENSG00000088325 TPX2 C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100 TPX2, microtubule nucleation factor protein-coding 4.560 1.176 3.343 8.695 8.578 8.288 5.118 1.980 9.172 3.710 1.619 5.914 13.507 4.222 3.330 1.254 1.222 5.386 3.206 2.712 6.445 3.258 256 chr11 64007007 64010793 + 0 NA promoter-TSS (NM_057092) promoter-TSS (NM_057092) 296 NM_001135208 2286 Hs.227729 NM_004470 ENSG00000173486 FKBP2 FKBP-13|PPIase FK506 binding protein 2 protein-coding 5.050 1.570 3.106 4.082 9.008 2.168 5.178 1.257 3.919 4.408 1.986 10.761 7.629 2.333 2.949 2.648 2.172 2.940 5.565 2.420 2.673 3.481 1487 chr8 59736546 59783937 + 0 NA intron (NM_014729, intron 4 of 8) L1MEe|LINE|L1 -187837 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 0.352 0.267 0.296 0.120 5.537 0.245 1.806 1.717 5.446 0.396 0.179 0.327 0.151 1.100 0.644 0.066 0.149 1.696 0.489 0.620 0.134 2.008 372 chr12 118489207 118504250 + 0 NA intron (NM_001278557, intron 1 of 8) AluSq2|SINE|Alu 2288 NM_018639 55884 Hs.506985 NM_018639 ENSG00000176871 WSB2 SBA2 WD repeat and SOCS box containing 2 protein-coding 1.482 0.552 1.857 1.424 2.476 1.242 2.921 0.500 1.526 1.684 1.380 3.723 7.934 1.068 1.538 0.638 0.466 3.860 1.648 1.043 1.128 1.306 1540 chr8 145732223 145736537 + 0 NA promoter-TSS (NM_138431) promoter-TSS (NM_138431) -39 NR_130120 113655 Hs.7678 NM_138431 ENSG00000167700 MFSD3 - major facilitator superfamily domain containing 3 protein-coding 4.508 1.177 1.684 5.653 11.388 2.488 14.199 2.349 6.887 7.499 2.230 11.113 8.438 1.559 2.254 4.878 3.206 0.974 3.221 1.031 2.293 1.054 920 chr2 219431824 219436054 + 0 NA promoter-TSS (NM_020935) promoter-TSS (NM_020935) 636 NM_001271634 9125 Hs.148767 NM_005444 ENSG00000144580 CNOT9 CAF40|CT129|RCD-1|RCD1|RQCD1 CCR4-NOT transcription complex subunit 9 protein-coding 2.924 0.849 2.783 5.417 6.432 5.100 5.216 0.710 3.218 2.618 1.543 4.063 7.194 3.582 3.161 2.211 2.207 2.544 1.680 1.199 3.825 1.590 1330 chr6 42188831 42196581 + 0 NA TTS (NM_001297573) TTS (NM_001297573) -7073 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 3.559 0.096 4.457 0.124 4.135 1.604 3.819 0.318 0.806 0.599 1.084 2.722 1.100 1.555 1.520 0.040 0.030 2.809 6.238 0.244 0.017 6.643 1284 chr5 179243511 179256246 + 0 NA intron (NM_003900, intron 1 of 7) intron (NM_003900, intron 1 of 7) 2036 NM_003900 8878 Hs.587290 NM_003900 ENSG00000161011 SQSTM1 A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B sequestosome 1 protein-coding 2.410 1.353 7.521 2.755 3.116 1.949 4.996 0.510 1.114 1.768 1.791 2.841 12.700 4.780 2.304 2.235 1.734 1.682 1.737 2.426 2.134 1.661 428 chr14 62012371 62046014 + 0 NA non-coding (NR_110416, exon 4 of 5) non-coding (NR_110416, exon 4 of 5) 7720 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 1.647 0.755 1.075 0.744 0.868 0.543 2.541 2.016 4.741 1.329 0.634 2.784 1.274 0.808 1.156 0.134 0.270 4.644 5.187 1.819 0.142 3.393 887 chr2 161256010 161265733 + 0 NA intron (NM_002897, intron 1 of 13) intron (NM_002897, intron 1 of 13) 3522 NR_039946 100616364 NR_039946 ENSG00000153250 MIR4785 mir-4785 microRNA 4785 ncRNA 2.740 2.661 0.894 0.260 3.044 0.576 2.445 0.372 1.005 0.670 0.432 1.117 1.782 2.179 1.552 0.572 0.613 1.560 0.402 4.863 0.297 1.085 1606 chr9 136241188 136243960 + 0 NA promoter-TSS (NR_103997) promoter-TSS (NR_103997) 463 NM_001280793 6836 Hs.512465 NM_033161 ENSG00000148248 SURF4 ERV29 surfeit 4 protein-coding 2.810 1.652 10.856 3.010 6.877 3.401 5.654 2.026 10.546 7.115 1.827 5.721 6.990 3.074 2.903 2.795 1.758 3.399 1.031 1.877 1.695 0.569 1160 chr4 47301 60710 + 0 NA intron (NM_001286053, intron 1 of 7) MER21C|LTR|ERVL 812 NM_001039127 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 1.273 0.212 0.905 2.317 2.055 0.406 0.981 0.184 0.893 1.867 0.167 0.661 0.690 0.635 0.551 4.189 5.259 0.293 0.085 0.216 1.580 0.138 99 chr1 156864096 156869165 + 0 NA intron (NM_001080471, intron 1 of 22) intron (NM_001080471, intron 1 of 22) 3107 NM_001080471 375033 Hs.142003 NM_207369 ENSG00000187800 PEAR1 JEDI|MEGF12 platelet endothelial aggregation receptor 1 protein-coding 0.086 4.152 0.253 0.190 0.456 0.329 0.831 0.498 0.598 1.663 0.649 1.737 1.123 2.184 0.447 0.030 0.141 11.846 1.549 8.412 0.022 0.250 72 chr1 120202027 120219051 + 0 NA Intergenic Intergenic -20149 NM_001080470 90874 Hs.381105 NM_001080470 ENSG00000143067 ZNF697 - zinc finger protein 697 protein-coding 0.414 0.065 0.090 0.358 1.047 0.111 0.081 0.023 0.077 0.590 0.515 1.203 5.078 0.107 0.166 0.053 0.083 0.042 0.212 0.190 0.226 0.055 500 chr15 80752773 80757746 + 0 NA intron (NM_014862, intron 3 of 18) intron (NM_014862, intron 3 of 18) 58567 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 0.085 2.695 0.148 0.150 0.143 0.074 0.168 1.318 4.030 0.294 0.031 0.213 0.050 0.126 0.063 0.064 0.050 0.121 6.239 0.115 0.056 869 chr2 103735172 103766333 + 0 NA Intergenic Intergenic -149865 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 0.219 0.012 0.094 13.650 0.172 0.064 0.312 0.028 0.047 0.214 0.026 0.058 0.228 0.092 0.138 0.122 0.234 0.007 0.005 0.039 14.666 0.057 1592 chr9 123681766 123700430 + 0 NA intron (NM_001190945, intron 1 of 8) CpG 353 NM_001190945 7185 Hs.531251 NM_005658 ENSG00000056558 TRAF1 EBI6|MGC:10353 TNF receptor associated factor 1 protein-coding 0.432 0.398 0.493 0.336 1.077 0.336 3.394 1.035 1.909 0.721 0.444 1.080 1.925 1.263 0.519 0.151 0.258 1.115 0.315 0.585 0.068 0.335 1496 chr8 74203660 74209988 + 0 NA promoter-TSS (NM_000971) promoter-TSS (NM_000971) -13 NM_172037 157506 Hs.244940 NM_172037 ENSG00000121039 RDH10 SDR16C4 retinol dehydrogenase 10 protein-coding 3.628 2.010 2.574 4.001 7.270 1.973 5.631 1.597 8.571 2.650 2.181 7.946 13.311 2.461 2.616 3.140 2.550 1.657 3.731 3.054 2.388 2.056 1221 chr5 52282441 52287010 + 0 NA promoter-TSS (NM_002203) promoter-TSS (NM_002203) -431 NM_002203 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 1.640 0.667 1.491 1.409 4.983 1.942 2.606 0.069 0.271 1.172 1.254 5.781 5.753 1.017 3.382 0.598 0.606 1.818 6.697 1.178 0.376 3.504 1200 chr4 177820721 177826610 + 0 NA Intergenic Intergenic -109766 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|VRP vascular endothelial growth factor C protein-coding 0.191 0.399 0.422 0.054 5.210 0.050 3.522 1.466 11.940 1.052 0.162 1.822 0.030 0.684 0.460 2.349 0.321 0.873 0.039 2.174 790 chr19 41767366 41773060 + 0 NA promoter-TSS (NM_001321208) promoter-TSS (NM_001321208) -51 NM_001321208 11100 Hs.155218 NM_007040 ENSG00000105323 HNRNPUL1 E1B-AP5|E1BAP5|HNRPUL1 heterogeneous nuclear ribonucleoprotein U like 1 protein-coding 5.867 1.844 4.105 7.559 7.338 5.246 9.971 1.472 6.391 7.187 1.823 5.546 9.503 4.801 4.337 3.161 2.968 4.358 4.100 2.331 3.928 2.814 533 chr16 4844882 4853748 + 0 NA intron (NR_046480, intron 5 of 9) MIR3|SINE|MIR 3636 NR_046480 79641 Hs.459795 NM_024589 ENSG00000067836 ROGDI KTZS rogdi homolog protein-coding 1.514 0.335 1.262 1.574 1.917 0.404 1.540 0.451 0.811 1.134 0.582 5.093 2.785 0.450 0.679 0.775 0.384 0.398 0.360 0.427 0.513 0.445 918 chr2 219145955 219164624 + 0 NA promoter-TSS (NM_001321430) promoter-TSS (NM_001321430) -564 NM_001321430 64114 Hs.591605 NM_022152 ENSG00000135926 TMBIM1 LFG3|MST100|MSTP100|PP1201|RECS1 transmembrane BAX inhibitor motif containing 1 protein-coding 1.109 0.318 0.979 0.181 2.111 0.994 1.263 0.487 1.703 1.487 0.944 3.609 4.882 2.970 1.020 0.156 0.196 1.972 2.494 0.656 0.111 4.081 1413 chr7 55128639 55147992 + 0 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) -39195 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 0.423 2.048 3.292 0.094 1.292 1.102 4.763 0.974 3.662 0.760 0.345 1.483 1.332 3.149 0.690 0.069 0.163 4.747 2.342 5.096 0.096 1.898 1122 chr3 170073281 170078134 + 0 NA intron (NM_001145098, intron 1 of 7) CpG 234 NM_005414 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 3.237 1.072 7.006 4.784 5.531 2.042 4.395 1.833 4.589 4.881 3.016 8.411 10.389 2.302 1.998 4.637 3.461 2.389 1.384 1.450 3.489 1.466 1275 chr5 172368350 172372676 + 0 NA intron (NM_001031711, intron 9 of 9) intron (NM_001031711, intron 9 of 9) -15219 NM_001317981 51121 Hs.546390 NM_016093 ENSG00000037241 RPL26L1 RPL26P1 ribosomal protein L26 like 1 protein-coding 0.152 2.375 0.163 0.187 0.259 0.088 0.178 0.711 1.939 0.147 0.037 0.182 0.184 0.178 0.313 0.148 0.140 0.345 0.019 4.781 0.132 0.066 1108 chr3 153864494 153872269 + 0 NA intron (NM_015595, intron 5 of 14) L1ME3C|LINE|L1 29232 NM_015595 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 0.218 2.182 0.074 0.151 0.425 0.099 1.813 0.346 1.301 0.265 0.042 0.121 0.182 0.127 0.254 0.080 0.112 2.372 0.027 6.401 0.044 1.071 1598 chr9 130280442 130286634 + 0 NA intron (NM_001035534, intron 5 of 13) MIRb|SINE|MIR 47858 NM_022833 64855 Hs.522401 NM_022833 ENSG00000136830 FAM129B C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 family with sequence similarity 129 member B protein-coding 0.231 2.379 0.449 0.104 0.336 2.843 5.354 1.567 4.946 0.528 0.089 0.642 0.127 1.643 0.630 0.039 0.137 9.795 5.574 4.848 0.037 1.582 1053 chr3 5054163 5069130 + 0 NA Intergenic Intergenic -40000 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 1.592 1.390 2.660 0.666 3.310 0.557 2.891 0.873 2.157 1.031 0.808 3.727 1.530 1.877 0.590 0.306 0.375 2.121 2.463 3.038 0.483 2.457 414 chr14 37323858 37328858 + 0 NA intron (NM_030631, intron 2 of 9) intron (NM_030631, intron 2 of 9) 95238 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 11.202 0.025 0.081 0.021 0.513 0.110 0.056 0.069 0.330 0.047 0.834 0.201 0.041 0.377 0.110 0.171 0.027 0.025 0.044 0.045 0.057 462 chr15 32905637 32910735 + 0 NA 5' UTR (NM_014783, exon 1 of 12) 5' UTR (NM_014783, exon 1 of 12) 509 NM_001286480 9824 Hs.591130 NM_014783 ENSG00000198826 ARHGAP11A GAP (1-12) Rho GTPase activating protein 11A protein-coding 4.100 0.559 4.353 6.386 12.959 4.162 4.222 1.288 7.943 3.450 1.943 5.207 7.525 3.655 3.217 2.127 2.381 5.629 7.720 1.529 4.532 2.773 1014 chr21 38070330 38074878 + 0 NA intron (NM_005069, intron 1 of 10) CpG-17199 1171 NM_009586 6493 Hs.146186 NM_005069 ENSG00000159263 SIM2 HMC13F06|HMC29C01|SIM|bHLHe15 single-minded family bHLH transcription factor 2 protein-coding 0.140 0.653 0.155 0.118 1.007 2.103 1.804 0.742 1.225 1.302 0.272 2.940 0.148 2.285 0.160 4.872 3.590 0.249 0.785 0.127 0.062 843 chr2 46200203 46211012 + 0 NA intron (NM_005400, intron 3 of 14) intron (NM_005400, intron 3 of 14) -318934 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 0.169 0.091 8.365 0.165 0.077 0.162 0.044 0.039 0.247 0.022 0.139 0.148 0.085 0.039 0.267 0.291 0.113 0.004 0.021 4.082 0.070 1491 chr8 71313795 71317026 + 0 NA promoter-TSS (NM_001321712) promoter-TSS (NM_001321712) 80 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 4.574 1.676 9.396 5.518 11.809 2.777 7.214 2.333 9.144 3.717 3.447 8.110 17.621 5.672 3.529 8.160 3.690 3.086 3.615 2.739 3.684 2.051 1362 chr6 113710618 113715026 + 0 NA Intergenic Intergenic 258455 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LOC101927686 - uncharacterized LOC101927686 ncRNA 0.167 0.028 0.029 1.827 0.176 0.086 0.083 0.070 0.047 0.144 0.136 0.084 0.130 0.095 1.497 3.168 0.138 0.093 5.654 0.044 1209 chr5 10351501 10356248 + 0 NA 5' UTR (NM_001270660, exon 1 of 25) 5' UTR (NM_001270660, exon 1 of 25) 123 NM_005885 10299 Hs.432862 NM_005885 ENSG00000145495 MARCH6 DOA10|MARCH-VI|RNF176|TEB4 membrane associated ring-CH-type finger 6 protein-coding 5.124 1.461 3.754 1.950 8.862 1.911 16.545 2.767 10.213 7.379 1.865 9.321 9.731 2.503 2.769 4.362 3.545 3.512 1.852 1.325 1.308 1.311 263 chr11 65057785 65060768 + 0 NA intron (NM_002689, intron 13 of 17) intron (NM_002689, intron 13 of 17) -23013 NM_006779 10435 Hs.343380 NM_006779 ENSG00000149798 CDC42EP2 BORG1|CEP2 CDC42 effector protein 2 protein-coding 1.114 3.694 0.439 1.572 0.290 6.955 0.620 2.074 6.086 0.470 0.135 0.595 2.032 2.943 0.351 0.261 0.163 4.822 0.070 7.637 0.930 0.411 632 chr17 37351304 37358428 + 0 NA promoter-TSS (NM_000723) promoter-TSS (NM_000723) -910 NM_000723 782 Hs.635 NM_000723 ENSG00000067191 CACNB1 CAB1|CACNLB1|CCHLB1 calcium voltage-gated channel auxiliary subunit beta 1 protein-coding 2.673 1.286 2.550 3.274 5.790 1.471 3.678 0.776 3.468 4.891 1.750 6.042 5.487 2.507 1.275 2.210 1.940 1.917 1.362 1.802 2.065 1.686 1371 chr6 138148159 138155094 + 0 NA intron (NR_049793, intron 3 of 3) intron (NR_049793, intron 3 of 3) -36699 NM_001270508 7128 Hs.211600 NM_006290 ENSG00000118503 TNFAIP3 A20|AISBL|OTUD7C|TNFA1P2 TNF alpha induced protein 3 protein-coding 0.276 0.429 0.099 0.154 0.607 0.056 2.392 0.190 0.235 1.859 0.228 0.955 0.163 0.435 0.867 0.022 0.052 3.995 0.195 1.455 0.049 4.005 394 chr13 100461791 100469617 + 0 NA intron (NR_120421, intron 1 of 4) intron (NR_120421, intron 1 of 4) -84449 NR_120383 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 0.218 0.070 0.069 0.070 0.101 0.020 0.684 2.562 9.076 0.214 0.031 0.057 0.054 0.306 0.066 0.043 0.030 1.037 0.027 0.156 0.059 0.181 991 chr20 55203053 55212739 + 0 NA intron (NM_003222, intron 3 of 6) intron (NM_003222, intron 3 of 6) 3538 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 1.307 0.358 0.696 0.110 1.685 0.784 0.746 0.163 0.184 2.503 0.745 5.652 5.310 0.937 0.303 0.516 0.391 0.014 0.360 0.264 0.012 0.205 514 chr15 99285790 99307872 + 0 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) -30824 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 0.338 0.185 0.189 0.116 5.023 0.349 0.419 0.078 0.127 0.586 0.499 1.298 0.466 0.316 0.372 0.159 0.230 0.135 0.047 0.407 0.069 0.219 610 chr17 21029060 21031924 + 0 NA intron (NM_015510, intron 1 of 6) CpG 251 NM_015510 25979 Hs.386989 NM_015510 ENSG00000109016 DHRS7B CGI-93|SDR32C1 dehydrogenase/reductase 7B protein-coding 1.628 0.475 1.216 1.493 26.644 0.641 3.117 1.111 2.573 2.558 0.873 2.995 8.292 1.149 3.057 0.928 0.801 0.748 1.136 0.352 1.334 0.669 725 chr18 46461224 46480178 + 0 NA intron (NM_005904, intron 2 of 3) intron (NM_005904, intron 2 of 3) -1524 NM_001190823 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 2.777 0.808 2.142 1.553 1.617 1.497 2.042 0.434 1.196 1.502 0.612 1.286 0.563 2.105 0.616 1.726 1.477 2.504 0.452 1.363 1.562 1.195 931 chr2 241496390 241509056 + 0 NA intron (NM_001033575, intron 2 of 2) AluY|SINE|Alu -2196 NM_001308375 51281 Hs.656615 NM_016552 ENSG00000144504 ANKMY1 ZMYND13 ankyrin repeat and MYND domain containing 1 protein-coding 3.453 0.792 2.624 2.864 2.162 1.885 2.797 0.648 1.768 1.516 0.888 3.509 5.919 2.240 2.177 1.409 0.814 1.392 0.788 1.064 1.217 1.324 513 chr15 99269700 99272526 + 0 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) -56542 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 1.733 3.766 2.734 0.237 10.169 4.605 5.487 1.952 10.700 4.365 2.490 6.495 1.210 2.725 3.229 0.384 0.214 11.309 2.120 9.934 0.029 2.199 615 chr17 27465760 27488469 + 0 NA intron (NM_001346765, intron 2 of 42) intron (NM_001346765, intron 2 of 42) -9717 NM_001346768 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 0.687 0.622 0.693 0.396 1.416 0.648 4.192 0.851 1.335 0.904 0.401 2.495 0.722 1.026 0.271 0.159 0.181 2.516 1.242 1.279 0.176 1.935 50 chr1 51725927 51734778 + 0 NA intron (NM_014372, intron 1 of 2) intron (NM_014372, intron 1 of 2) 28407 NM_014372 26994 Hs.309641 NM_014372 ENSG00000123091 RNF11 CGI-123|SID1669 ring finger protein 11 protein-coding 0.203 0.512 0.125 0.072 0.280 0.239 0.638 1.417 4.923 0.409 0.036 0.383 1.017 0.402 0.881 0.064 0.042 5.677 0.902 1.129 0.039 1.392 476 chr15 66992573 66998502 + 0 NA non-coding (NR_027654, exon 1 of 5) non-coding (NR_027654, exon 1 of 5) 863 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 1.653 0.898 7.538 4.671 10.512 3.053 5.660 1.481 4.804 2.083 1.780 9.616 1.438 2.126 1.095 3.413 2.049 1.752 0.679 0.993 2.274 0.097 1519 chr8 128669618 128702735 + 0 NA Intergenic AluY|SINE|Alu 60037 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility candidate 11 (non-protein coding) ncRNA 18.591 0.064 0.283 0.191 2.371 0.278 0.151 0.040 0.138 1.092 2.016 2.226 8.564 0.242 0.154 0.087 0.106 0.029 0.028 0.212 0.079 0.066 1198 chr4 177694233 177717149 + 0 NA intron (NM_005429, intron 1 of 6) AluY|SINE|Alu 8208 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|VRP vascular endothelial growth factor C protein-coding 0.266 0.340 0.245 0.103 6.182 0.142 3.130 0.103 0.235 0.588 0.059 1.576 0.251 0.803 0.626 0.168 0.236 1.107 0.452 0.691 0.020 1.274 1626 chrX 39951021 39969643 + 0 NA intron (NM_001123384, intron 1 of 13) CpG-27857 -3613 NM_001123385 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 1.428 0.732 1.545 1.184 1.893 0.731 1.454 0.473 1.577 1.180 0.352 2.335 1.408 1.458 0.974 1.045 0.671 1.391 0.369 0.866 0.988 0.713 1409 chr7 39987809 39992887 + 0 NA exon (NM_031267, exon 1 of 14) exon (NM_031267, exon 1 of 14) 389 NM_003718 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 5.285 3.077 6.583 5.435 9.203 3.117 8.632 2.173 8.097 6.982 2.564 11.219 9.582 9.485 3.773 3.589 2.141 2.990 3.204 3.164 3.303 3.315 797 chr19 42780890 42789333 + 0 NA intron (NM_001304815, intron 2 of 20) CpG -3706 NM_015125 23152 Hs.388236 NM_015125 ENSG00000079432 CIC - capicua transcriptional repressor protein-coding 2.904 1.540 1.043 1.322 4.425 2.195 2.968 1.454 5.466 3.057 2.691 6.232 3.640 2.795 2.595 0.687 0.345 1.156 0.784 2.579 0.547 0.374 1077 chr3 57580603 57585058 + 0 NA promoter-TSS (NR_132369) promoter-TSS (NR_132369) 385 NM_001660 378 Hs.652183 NM_001660 ENSG00000168374 ARF4 ARF2 ADP ribosylation factor 4 protein-coding 3.326 2.415 4.815 3.771 5.179 1.798 4.864 1.581 8.776 3.500 0.923 5.080 6.762 2.927 1.936 0.979 0.902 3.009 1.771 4.536 2.017 2.457 1136 chr3 181426593 181455156 + 0 NA intron (NR_004053, intron 4 of 4) intron (NR_004053, intron 4 of 4) 11162 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box 2 protein-coding 1.592 0.039 1.909 11.331 nan 0.077 0.498 0.014 0.114 3.207 1.873 5.795 13.566 0.111 0.400 3.523 3.859 0.012 0.118 0.059 12.953 0.070 1175 chr4 77353597 77383266 + 0 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 12178 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 0.208 0.017 0.108 4.977 0.158 0.057 0.065 0.095 0.396 0.793 0.459 0.127 0.177 0.070 0.074 0.743 1.257 0.027 0.013 0.056 5.239 0.090 293 chr11 128350551 128380647 + 0 NA intron (NM_001143820, intron 3 of 9) intron (NM_001143820, intron 3 of 9) 26606 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 1.102 0.720 0.597 0.109 0.106 0.539 2.100 1.060 2.968 0.288 0.070 1.152 0.081 1.745 0.840 0.035 0.069 1.401 1.987 1.859 0.032 1.191 1272 chr5 172312688 172316224 + 0 NA intron (NM_001031711, intron 1 of 9) MIR|SINE|MIR 53233 NM_001031711 57222 Hs.509163 NM_020462 ENSG00000113719 ERGIC1 ERGIC-32|ERGIC32|NET24 endoplasmic reticulum-golgi intermediate compartment 1 protein-coding 0.163 3.745 0.275 0.181 0.490 0.081 0.313 0.091 0.256 0.292 0.022 0.264 0.256 1.764 0.856 0.065 0.068 1.634 0.058 8.261 0.130 0.188 1299 chr6 16668835 16714560 + 0 NA intron (NM_001128164, intron 2 of 7) intron (NM_001128164, intron 2 of 7) -69672 NR_136240 101928433 Hs.408455 NR_136240 LOC101928433 - uncharacterized LOC101928433 ncRNA 0.921 0.195 0.634 0.201 0.915 0.497 1.069 0.256 0.606 0.437 0.176 0.768 2.942 0.271 0.581 0.095 0.141 0.635 0.821 0.423 0.118 0.795 1236 chr5 118656535 118671771 + 0 NA intron (NM_001286815, intron 2 of 2) intron (NM_001286815, intron 2 of 2) -4717 NM_001286814 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 0.972 0.195 0.613 0.145 3.198 0.733 1.283 0.113 0.141 1.432 1.335 2.090 8.906 0.161 0.238 0.041 0.072 0.849 0.825 0.489 0.121 0.708 967 chr20 44598954 44602802 + 0 NA promoter-TSS (NM_022095) promoter-TSS (NM_022095) -45 NM_022095 63925 Hs.174193 NM_022095 ENSG00000198026 ZNF335 MCPH10|NIF-1|NIF1|NIF2 zinc finger protein 335 protein-coding 5.284 2.037 7.068 5.698 8.728 1.630 7.575 2.744 7.905 5.614 2.185 10.439 15.220 6.481 2.951 2.784 2.297 5.728 3.511 2.285 4.312 1.715 1611 chr9 137296720 137307253 + 0 NA intron (NM_001291921, intron 3 of 8) intron (NM_001291921, intron 3 of 8) 3558 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 3.467 0.553 2.064 0.413 3.975 2.547 1.125 0.175 0.492 3.428 1.452 4.085 3.338 0.414 0.680 0.911 0.761 0.702 0.523 0.904 0.470 0.162 1326 chr6 36093977 36099966 + 0 NA Intergenic AluSx|SINE|Alu -1290 NR_072996 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 1.874 0.226 0.282 1.599 1.165 1.163 3.112 0.285 0.342 0.886 0.664 3.008 0.538 2.106 0.920 1.310 0.766 2.769 6.397 0.692 0.832 6.565 322 chr12 14921412 14931360 + 0 NA promoter-TSS (NM_177925) promoter-TSS (NM_177925) -884 NM_177925 55766 Hs.524280 NM_018267 ENSG00000246705 H2AFJ H2AJ H2A histone family member J protein-coding 3.864 1.195 1.927 2.925 5.994 1.638 6.174 0.660 3.329 2.812 1.207 6.701 7.919 2.074 2.850 1.998 2.048 2.377 3.559 1.793 2.059 2.589 645 chr17 41115415 41138195 + 0 NA intron (NM_001142653, intron 3 of 5) AluSx1|SINE|Alu 5215 NM_025267 100885850 Hs.317403 NM_025267 ENSG00000108825 PTGES3L-AARSD1 - PTGES3L-AARSD1 readthrough protein-coding 1.173 0.266 0.883 0.831 1.345 0.554 1.162 0.163 0.710 1.113 0.384 2.073 4.080 0.625 0.453 0.354 0.357 0.318 0.295 0.260 0.263 0.289 469 chr15 57510026 57530841 + 0 NA intron (NM_001306220, intron 1 of 11) intron (NM_001306220, intron 1 of 11) 8778 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20 transcription factor 12 protein-coding 0.168 0.065 0.107 3.352 0.330 0.037 0.103 0.023 0.191 0.138 0.019 0.217 0.142 0.123 0.080 0.363 0.859 0.010 0.020 0.106 2.540 0.055 635 chr17 38437520 38442379 + 0 NA Intergenic Intergenic -4197 NM_001254 990 Hs.405958 NM_001254 ENSG00000094804 CDC6 CDC18L|HsCDC18|HsCDC6|MGORS5 cell division cycle 6 protein-coding 75.548 1.523 3.596 0.235 2.191 0.706 1.302 0.261 1.728 0.806 0.250 1.857 1.266 1.404 0.772 0.144 0.123 3.430 3.226 4.132 0.056 5.371 1088 chr3 101437083 101446757 + 0 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -1517 NM_024548 79598 Hs.444135 NM_024548 ENSG00000182504 CEP97 2810403B08Rik|LRRIQ2 centrosomal protein 97 protein-coding 0.922 0.205 0.924 0.654 4.242 0.351 1.014 0.228 1.048 2.035 0.806 2.244 11.549 0.614 0.463 0.463 0.548 0.974 0.490 0.233 0.356 1.003 575 chr16 87983653 87986208 + 0 NA promoter-TSS (NM_001173541) promoter-TSS (NM_001173541) -108 NM_001173540 54971 Hs.461705 NM_017869 ENSG00000172530 BANP BEND1|SMAR1|SMARBP1 BTG3 associated nuclear protein protein-coding 6.217 2.337 6.720 7.990 14.190 4.779 5.098 2.358 10.031 13.198 2.702 12.592 11.958 2.341 3.213 2.955 1.748 3.597 2.941 3.328 4.096 2.543 1382 chr7 2986853 3003755 + 0 NA intron (NM_032415, intron 2 of 24) L1ME3E|LINE|L1 88275 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|PPBL caspase recruitment domain family member 11 protein-coding 0.363 0.147 0.232 0.102 0.379 0.170 0.453 0.019 0.053 1.721 2.187 1.622 4.730 0.246 0.180 0.032 0.079 0.028 0.017 0.311 0.082 0.095 1452 chr7 137631868 137644435 + 0 NA promoter-TSS (NM_001243523) promoter-TSS (NM_001243523) 57 NM_001243523 100130880 Hs.712161 NM_001243523 LOC100130880 - uncharacterized LOC100130880 protein-coding 5.522 0.128 0.384 0.085 0.434 0.563 0.492 0.140 0.685 0.392 0.087 0.315 0.386 0.904 0.423 0.050 0.038 0.615 0.003 0.257 0.091 0.361 1176 chr4 77554558 77561705 + 0 NA intron (NM_020859, intron 2 of 10) MER6A|DNA|TcMar-Tigger 61427 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 0.473 0.139 0.176 0.207 0.098 0.053 0.363 0.142 0.207 0.278 0.005 0.226 0.137 0.709 0.138 0.059 0.050 1.818 1.095 0.435 0.201 4.785 1566 chr9 74971794 74981802 + 0 NA intron (NM_001102421, intron 1 of 5) intron (NM_001102421, intron 1 of 5) 2710 NM_001278243 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 2.506 1.151 5.207 2.340 4.455 2.032 2.702 0.748 3.615 4.793 0.752 3.419 7.842 2.675 1.294 1.854 1.689 1.938 1.796 2.047 1.545 1.253 1039 chr22 38708406 38713354 + 0 NA intron (NM_001289912, intron 5 of 14) intron (NM_001289912, intron 5 of 14) 2533 NM_152221 1454 Hs.474833 NM_001894 ENSG00000213923 CSNK1E CKIepsilon|HCKIE casein kinase 1 epsilon protein-coding 1.610 0.709 1.242 1.059 3.554 3.947 5.312 0.731 1.921 1.635 0.470 4.807 4.304 3.699 1.809 0.851 0.802 3.197 1.798 1.188 0.666 2.105 979 chr20 51928163 51949950 + 0 NA intron (NM_001193421, intron 2 of 2) AluSx1|SINE|Alu 137234 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 0.250 0.023 0.153 2.538 0.189 0.070 0.051 0.083 0.129 0.252 0.055 0.209 0.271 0.080 0.176 0.054 0.140 0.329 0.011 0.051 3.566 0.051 709 chr17 77805904 77819373 + 0 NA intron (NM_003655, intron 2 of 4) intron (NM_003655, intron 2 of 4) 575 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 2.188 1.096 1.984 2.598 3.212 0.718 2.664 0.445 1.899 0.913 0.636 3.131 4.471 1.813 1.640 1.345 0.865 0.671 0.420 1.349 0.759 0.501 1005 chr21 35951610 36003991 + 0 NA intron (NM_004414, intron 1 of 3) intron (NM_004414, intron 1 of 3) 8342 NM_001285389 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 0.196 0.043 0.152 4.765 0.188 0.095 0.187 0.106 0.208 0.318 0.322 0.145 1.109 0.144 0.072 0.179 0.191 0.027 0.007 0.096 3.622 0.065 28 chr1 27013259 27033408 + 0 NA exon (NM_006015, exon 1 of 20) exon (NM_006015, exon 1 of 20) 811 NM_139135 8289 Hs.468972 NM_006015 ENSG00000117713 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT-rich interaction domain 1A protein-coding 1.907 0.953 1.435 1.597 3.508 1.629 2.364 0.970 4.548 1.957 0.923 3.969 3.661 1.547 1.385 1.157 0.815 2.852 2.064 1.248 0.964 1.973 40 chr1 36613485 36628813 + 0 NA promoter-TSS (NM_001286365) promoter-TSS (NM_001286365) -417 NM_018067 55700 Hs.356096 NM_018067 ENSG00000116871 MAP7D1 PARCC1|RPRC1 MAP7 domain containing 1 protein-coding 1.379 1.913 1.750 1.226 2.898 1.239 3.941 1.002 2.853 2.861 0.768 3.625 4.261 3.624 1.232 0.901 0.609 3.356 2.414 2.802 0.667 2.117 310 chr12 7069450 7075373 + 0 NA promoter-TSS (NR_135032) promoter-TSS (NR_135032) 3 NR_135032 105369635 Hs.744442 NR_135032 ENSG00000257084 LOC105369635 - uncharacterized LOC105369635 ncRNA 10.415 0.282 0.807 9.149 5.428 2.605 3.506 0.590 1.304 9.720 3.146 13.882 15.323 0.804 2.568 6.418 4.376 1.731 6.860 0.563 7.669 3.024 192 chr10 98589754 98608454 + 0 NA intron (NM_032440, intron 2 of 7) intron (NM_032440, intron 2 of 7) 6392 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 1.070 0.765 1.342 0.435 3.122 0.542 0.939 0.200 0.931 1.173 0.635 2.070 3.969 0.923 0.849 0.564 0.344 0.649 0.588 1.396 0.248 0.781 589 chr17 6914801 6919097 + 0 NA intron (NR_037715, intron 2 of 3) intron (NR_037715, intron 2 of 3) -1107 NM_001142798 124944 Hs.511801 NM_174893 ENSG00000258315 C17orf49 BAP18|HEPIS chromosome 17 open reading frame 49 protein-coding 2.627 2.046 4.618 3.051 9.127 2.803 5.290 1.766 6.191 5.829 1.173 5.955 4.251 5.729 5.383 1.503 1.071 1.977 3.244 3.421 2.491 1.931 1337 chr6 45386193 45394460 + 0 NA promoter-TSS (NM_001278478) promoter-TSS (NM_001278478) 12 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 0.572 0.584 0.420 0.569 1.092 1.921 3.643 2.871 9.158 0.718 1.154 3.686 3.236 3.292 3.178 4.190 2.692 1.280 0.573 0.649 0.586 0.344 215 chr11 8703148 8706437 + 0 NA promoter-TSS (NR_002580) promoter-TSS (NR_002580) 797 NM_000990 6157 Hs.523463 NM_000990 ENSG00000166441 RPL27A L27A ribosomal protein L27a protein-coding 5.238 2.864 4.457 5.721 8.525 4.650 5.226 1.625 8.140 14.674 1.501 13.936 9.294 4.243 2.740 2.251 1.279 4.724 2.499 3.853 4.115 1.980 699 chr17 73105223 73138677 + 0 NA intron (NM_024585, intron 2 of 2) AluSx|SINE|Alu 5940 NM_001252377 30833 Hs.67201 NM_014595 ENSG00000125458 NT5C DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1 5', 3'-nucleotidase, cytosolic protein-coding 1.691 0.385 1.948 1.074 4.632 0.533 1.018 0.360 1.046 1.962 1.422 3.082 6.641 1.049 0.668 0.737 0.535 1.141 0.716 0.611 0.613 0.832 1115 chr3 160392533 160398036 + 0 NA exon (NM_025047, exon 1 of 1) exon (NM_025047, exon 1 of 1) 336 NM_025047 80117 Hs.287702 NM_025047 ENSG00000179674 ARL14 ARF7 ADP ribosylation factor like GTPase 14 protein-coding 4.378 0.675 2.616 0.105 1.918 0.211 0.892 0.085 0.299 1.085 0.437 3.665 0.479 0.322 1.149 0.030 0.044 0.801 5.666 1.632 0.105 6.304 687 chr17 60186165 60202474 + 0 NA Intergenic Intergenic -51676 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 0.313 0.038 0.876 4.210 0.313 0.107 0.130 0.025 0.051 0.236 0.054 0.174 0.445 0.117 0.153 0.169 0.302 0.033 0.018 0.130 3.139 0.058 960 chr20 39630392 39635063 + 0 NA intron (NM_001318197, intron 1 of 3) AluJb|SINE|Alu 23326 NM_001318196 100128988 Hs.636443 NM_001318196 LOC100128988 - uncharacterized LOC100128988 protein-coding 3.319 1.564 4.750 0.275 2.870 1.598 4.839 1.200 2.366 1.912 0.905 5.767 5.138 1.682 3.384 0.218 0.363 10.617 5.660 3.330 0.443 4.705 818 chr19 52049023 52056209 + 0 NA Intergenic MER76|LTR|ERVL -17506 NM_198846 946 Hs.720304 NM_001245 ENSG00000105492 SIGLEC6 CD327|CD33L|CD33L1|CD33L2|CDW327|OBBP1 sialic acid binding Ig like lectin 6 protein-coding 0.139 0.017 0.076 0.045 0.088 3.447 0.051 0.022 0.057 0.129 0.029 0.105 0.069 0.029 0.117 0.051 0.075 0.006 0.045 0.064 0.040 150 chr1 246463976 246473302 + 0 NA intron (NM_001167740, intron 5 of 11) intron (NM_001167740, intron 5 of 11) 112075 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 0.496 0.027 0.086 0.206 0.249 0.114 0.158 0.052 0.155 1.924 0.270 0.204 10.812 0.052 0.131 0.074 0.117 0.051 0.013 0.150 0.399 0.091 1038 chr22 38564310 38589532 + 0 NA intron (NM_001199562, intron 1 of 15) intron (NM_001199562, intron 1 of 15) 840 NM_001004426 8398 Hs.170479 NM_003560 ENSG00000184381 PLA2G6 CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta phospholipase A2 group VI protein-coding 0.970 0.133 0.313 0.460 1.284 0.244 1.169 0.293 0.567 0.817 0.521 0.867 5.474 0.721 0.404 0.256 0.244 0.809 0.163 0.314 0.315 0.496 245 chr11 61520123 61524850 + 0 NA promoter-TSS (NM_013279) promoter-TSS (NM_013279) -375 NM_013279 745 Hs.473109 NM_013279 ENSG00000124920 MYRF C11orf9|MRF|Ndt80|pqn-47 myelin regulatory factor protein-coding 0.673 4.505 2.064 0.280 0.381 0.323 0.338 0.897 1.455 0.236 0.235 0.397 0.572 0.220 0.453 0.157 0.093 0.172 0.594 8.073 0.049 1.317 267 chr11 65321870 65329236 + 0 NA 5' UTR (NM_001130144, exon 1 of 28) 5' UTR (NM_001130144, exon 1 of 28) 146 NM_001130144 4054 Hs.289019 NM_021070 ENSG00000168056 LTBP3 DASS|LTBP-3|LTBP2|STHAG6|pp6425 latent transforming growth factor beta binding protein 3 protein-coding 5.062 2.530 3.212 0.537 1.826 1.696 2.246 1.190 2.607 1.051 0.896 5.886 1.094 0.873 3.134 0.620 0.884 1.491 2.372 3.891 0.389 0.808 543 chr16 30660559 30673078 + 0 NA intron (NM_001320464, intron 9 of 11) intron (NM_001320464, intron 9 of 11) -4022 NM_001105079 64319 Hs.247186 NM_022452 ENSG00000156860 FBRS FBS|FBS1 fibrosin protein-coding 1.898 1.029 2.445 3.930 3.967 1.619 4.326 1.305 3.627 2.297 0.879 4.664 7.935 1.674 1.099 1.271 0.765 2.172 1.015 1.075 1.857 0.960 826 chr19 56164087 56168827 + 0 NA 5' UTR (NM_007279, exon 1 of 12) 5' UTR (NM_007279, exon 1 of 12) 1041 NM_001012478 11338 Hs.528007 NM_007279 ENSG00000063244 U2AF2 U2AF65 U2 small nuclear RNA auxiliary factor 2 protein-coding 7.709 3.135 4.013 4.875 9.639 4.156 5.032 3.660 17.458 6.449 1.372 7.172 10.749 3.706 3.013 2.151 2.013 3.075 3.615 3.760 2.928 1.853 354 chr12 66022870 66067729 + 0 NA Intergenic AluJb|SINE|Alu -9147 NR_120431 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 0.285 0.544 0.523 0.067 1.741 0.115 0.924 0.066 0.222 0.823 0.274 4.133 0.879 0.078 1.538 0.055 0.075 5.335 2.353 1.380 0.051 5.557 1437 chr7 96634092 96639973 + 0 NA exon (NM_005222, exon 2 of 3) exon (NM_005222, exon 2 of 3) 1742 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 2.011 0.042 0.236 3.434 2.790 0.098 1.418 0.458 1.881 2.891 2.093 3.924 7.589 0.072 0.576 4.948 3.765 0.045 0.019 2.388 0.064 1344 chr6 50890344 50908966 + 0 NA Intergenic L1PA3|LINE|L1 113216 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 0.162 0.013 0.147 0.080 0.048 0.045 0.190 1.302 7.369 0.096 0.018 0.117 0.169 0.060 0.042 0.013 0.013 0.007 0.002 0.107 0.043 0.071 1064 chr3 42692409 42696862 + 0 NA promoter-TSS (NM_145166) promoter-TSS (NM_145166) -541 NM_145166 92999 Hs.409561 NM_145166 ENSG00000114853 ZBTB47 ZNF651 zinc finger and BTB domain containing 47 protein-coding 1.053 2.890 0.929 0.429 0.930 0.852 1.341 1.769 4.512 0.933 0.455 4.318 0.070 3.194 0.698 0.944 0.606 4.604 0.698 4.660 0.160 0.908 757 chr19 17415274 17429245 + 0 NA intron (NM_024050, intron 1 of 4) AluSg4|SINE|Alu 1922 NM_024050 79016 Hs.466154 NM_024050 ENSG00000130311 DDA1 C19orf58|PCIA1 DET1 and DDB1 associated 1 protein-coding 1.157 0.543 2.471 2.097 1.961 0.573 3.666 0.495 1.426 1.326 0.616 1.575 2.892 1.283 0.781 0.550 0.355 1.573 0.139 0.939 0.816 0.635 332 chr12 31899104 31904177 + 0 NA Intergenic AluSx4|SINE|Alu -19532 NM_001278412 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 3.239 1.052 5.935 1.265 5.658 0.386 5.632 0.418 1.695 3.784 2.427 3.264 8.259 1.374 3.318 0.955 1.425 7.781 8.866 3.637 1.337 2.921 9 chr1 7528734 7533650 + 0 NA intron (NM_015215, intron 6 of 22) intron (NM_015215, intron 6 of 22) -300137 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 0.027 0.258 0.298 0.328 1.358 0.139 0.451 2.957 8.396 1.082 0.145 0.691 0.348 1.570 0.128 0.063 2.051 0.257 0.501 0.070 0.157 1099 chr3 141083790 141089203 + 0 NA intron (NM_001080412, intron 1 of 7) MIR|SINE|MIR 43441 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 1.297 3.897 4.562 1.797 1.138 4.682 5.571 1.590 7.091 0.500 0.255 2.604 0.893 5.096 0.982 0.505 0.608 11.209 2.488 9.343 2.702 8.186 1217 chr5 34685890 34689524 + 0 NA promoter-TSS (NM_001145523) promoter-TSS (NM_001145523) 43 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 0.443 2.622 0.605 0.096 0.490 0.207 1.361 0.992 2.580 0.519 0.043 1.056 0.186 1.053 0.359 0.087 0.037 0.828 0.222 6.888 0.045 0.806 1600 chr9 130828377 130845064 + 0 NA intron (NM_001330988, intron 1 of 10) AluSx|SINE|Alu 6241 NM_001330988 114789 Hs.5476 NM_052901 ENSG00000148339 SLC25A25 MCSC|PCSCL|SCAMC-2 solute carrier family 25 member 25 protein-coding 2.252 0.289 1.086 1.736 1.781 1.596 1.421 0.411 1.470 1.934 0.672 1.264 3.504 1.140 0.724 0.892 0.974 0.898 1.139 0.421 1.015 0.986 34 chr1 28677507 28682266 + 0 NA Intergenic AluSx|SINE|Alu -16207 NM_001048183 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 1.551 1.327 0.500 0.111 3.980 1.175 2.124 0.214 0.538 1.773 0.156 1.662 1.430 0.970 0.807 0.049 0.075 1.136 1.528 3.391 0.072 5.667 745 chr19 10980794 11004149 + 0 NA intron (NM_199141, intron 1 of 15) intron (NM_199141, intron 1 of 15) 10218 NM_199141 10498 Hs.323213 NM_199141 ENSG00000142453 CARM1 PRMT4 coactivator associated arginine methyltransferase 1 protein-coding 0.615 0.180 0.262 2.979 1.405 0.136 0.645 0.204 0.739 0.999 0.194 1.158 3.500 0.517 0.138 1.020 0.725 0.433 0.068 0.167 1.995 0.288 603 chr17 17578854 17603057 + 0 NA intron (NM_030665, intron 1 of 5) MIRc|SINE|MIR 6168 NM_030665 10743 Hs.655395 NM_030665 ENSG00000108557 RAI1 SMCR|SMS retinoic acid induced 1 protein-coding 2.451 0.869 0.830 1.829 3.815 1.013 3.203 0.995 2.255 1.892 1.019 4.646 5.776 2.151 2.430 1.260 0.956 1.137 1.928 1.464 1.183 0.794 90 chr1 155160931 155164645 + 0 NA promoter-TSS (NM_001204291) promoter-TSS (NM_001204291) -82 NM_001204292 4582 Hs.89603 NM_002456 ENSG00000185499 MUC1 ADMCKD|ADMCKD1|CA 15-3|CD227|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM mucin 1, cell surface associated protein-coding 2.279 1.622 0.886 1.646 1.846 1.714 1.148 2.344 10.349 0.938 0.625 7.490 0.836 2.159 5.548 2.354 2.102 4.181 0.791 2.453 0.744 0.841 1410 chr7 44834994 44839041 + 0 NA intron (NM_021130, intron 1 of 4) intron (NM_021130, intron 1 of 4) 782 NM_001300981 5478 Hs.356331 NM_021130 ENSG00000196262 PPIA CYPA|CYPH|HEL-S-69p peptidylprolyl isomerase A protein-coding 5.095 2.324 5.900 5.121 7.596 3.649 8.174 1.737 8.669 8.416 2.287 13.546 13.392 7.411 3.249 4.384 3.047 4.656 4.177 3.761 3.807 3.172 565 chr16 75297449 75301106 + 0 NA intron (NM_001170714, intron 1 of 7) CpG 569 NM_001170720 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 3.070 2.723 7.208 3.196 4.989 3.971 4.262 1.673 3.661 3.935 1.552 10.073 6.997 4.132 1.993 1.456 0.306 1.335 2.198 3.460 0.520 1.058 620 chr17 35175091 35187668 + 0 NA Intergenic Intergenic 112581 NR_135669 102723471 Hs.567930 NR_135668 ENSG00000277268 LOC102723471 - uncharacterized LOC102723471 ncRNA 0.236 0.020 0.125 5.247 0.158 0.133 0.094 0.007 0.028 0.318 0.076 0.226 0.098 0.122 0.113 1.792 2.114 0.011 0.017 0.071 4.899 0.154 1346 chr6 51065001 51079715 + 0 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 285919 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 0.131 0.017 0.118 0.051 0.114 0.057 0.101 1.003 4.305 0.152 0.016 0.166 0.135 0.099 0.057 0.024 0.018 0.009 0.023 0.047 0.084 1434 chr7 91458410 91483201 + 0 NA Intergenic Intergenic 39229 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 0.257 0.090 0.176 4.850 0.802 0.042 0.101 0.045 0.127 0.634 2.679 4.067 7.332 0.234 0.101 2.443 3.948 0.088 0.076 0.251 7.083 0.191 850 chr2 61696639 61699383 + 0 NA promoter-TSS (NM_014709) promoter-TSS (NM_014709) -162 NM_014709 9736 Hs.644708 NM_014709 ENSG00000115464 USP34 - ubiquitin specific peptidase 34 protein-coding 5.590 2.022 6.746 6.938 11.692 4.304 6.763 4.530 16.382 9.310 2.460 6.226 14.936 4.895 3.069 3.598 2.798 3.400 2.183 3.583 5.593 2.003 1547 chr9 3494759 3514553 + 0 NA intron (NM_134428, intron 1 of 17) (TA)n|Simple_repeat|Simple_repeat -15169 NM_001282117 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 0.290 0.050 0.114 0.272 1.942 0.089 0.083 0.008 0.160 0.132 0.127 3.793 0.525 0.157 0.105 0.036 0.055 0.038 0.004 0.084 0.192 0.024 1045 chr22 46066780 46091118 + 0 NA intron (NM_001167621, intron 1 of 10) AluSx|SINE|Alu 11271 NM_013236 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 0.696 1.058 1.284 0.404 0.817 0.728 5.021 0.644 1.787 0.826 0.781 3.478 3.493 1.385 0.904 0.295 0.244 2.634 0.153 2.586 0.226 1.171 891 chr2 172958554 172971730 + 0 NA 3' UTR (NM_004405, exon 3 of 3) 3' UTR (NM_004405, exon 3 of 3) 2336 NM_004405 1746 Hs.419 NM_004405 ENSG00000115844 DLX2 TES-1|TES1 distal-less homeobox 2 protein-coding 0.778 1.015 0.311 1.089 10.879 0.769 1.301 0.648 1.886 3.959 0.919 1.525 0.420 2.315 1.341 0.473 0.433 1.405 0.108 2.034 0.270 0.121 937 chr20 3775523 3802606 + 0 NA promoter-TSS (NR_109859) promoter-TSS (NR_109859) -77 NR_109859 101929125 Hs.744106 NR_109859 ENSG00000275491 LINC01730 - long intergenic non-protein coding RNA 1730 ncRNA 1.964 0.585 1.128 0.893 5.013 1.481 4.539 1.518 5.326 1.911 1.091 4.885 3.495 1.581 1.677 0.327 0.313 5.186 1.464 1.201 0.515 1.212 1004 chr21 35054469 35060246 + 0 NA intron (NM_001001132, intron 1 of 29) L1MC5|LINE|L1 42573 NM_003024 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 0.389 2.336 0.225 0.407 1.531 1.279 0.965 0.734 3.208 0.419 0.267 0.993 0.657 1.085 0.542 0.311 0.639 1.827 0.036 7.629 0.359 1.961 1619 chr9 140511826 140514961 + 0 NA promoter-TSS (NR_122036) promoter-TSS (NR_122036) -46 NR_122035 85026 Hs.522520 NM_032937 ENSG00000203993 ARRDC1-AS1 C9orf37 ARRDC1 antisense RNA 1 ncRNA 2.900 1.461 9.099 2.867 7.209 3.513 3.605 1.654 5.437 5.771 1.513 4.912 4.156 2.133 2.726 2.287 1.509 2.613 2.303 1.604 1.584 1.152 16 chr1 12673178 12680760 + 0 NA promoter-TSS (NM_001319225) promoter-TSS (NM_001319225) -181 NM_001319225 9249 Hs.289347 NM_004753 ENSG00000162496 DHRS3 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 dehydrogenase/reductase 3 protein-coding 4.187 3.524 3.891 1.735 1.739 0.493 2.603 0.826 2.453 2.492 0.787 7.134 5.304 3.029 2.029 2.926 2.251 0.751 3.142 6.111 0.745 0.823 730 chr18 53242862 53257856 + 0 NA intron (NM_001330604, intron 3 of 19) intron (NM_001330604, intron 3 of 19) 2991 NM_001306207 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 0.747 0.058 0.359 6.613 0.869 0.235 0.044 0.105 0.208 0.681 0.406 0.601 1.923 0.376 0.258 1.219 2.286 0.624 0.028 0.052 8.289 0.082 1360 chr6 108878324 108888099 + 0 NA intron (NM_001455, intron 1 of 2) CpG-22442 1142 NM_001455 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 1.935 1.241 1.146 1.734 3.526 1.237 5.601 0.752 2.992 1.357 0.971 4.008 4.203 4.022 1.345 1.882 1.555 3.771 1.901 2.173 0.746 1.808 921 chr2 220040866 220043736 + 0 NA promoter-TSS (NM_001321391) promoter-TSS (NM_001321391) -388 NM_001321391 27013 Hs.4973 NM_015680 ENSG00000115649 CNPPD1 C2orf24|CGI-57 cyclin Pas1/PHO80 domain containing 1 protein-coding 4.538 3.233 4.844 5.989 6.520 5.809 8.087 1.324 5.653 3.188 1.374 5.804 11.671 6.880 3.663 3.884 2.051 3.741 2.595 4.791 2.017 2.824 1069 chr3 48469534 48476676 + 0 NA TTS (NM_001256964) TTS (NM_001256964) -1645 NM_001130082 5364 Hs.476209 NM_002673 ENSG00000164050 PLXNB1 PLEXIN-B1|PLXN5|SEP plexin B1 protein-coding 1.754 1.028 1.529 0.569 7.257 0.149 0.251 0.394 0.906 2.058 1.440 6.581 2.890 0.617 0.394 1.246 0.784 0.581 0.341 1.256 0.226 0.673 233 chr11 36491810 36498129 + 0 NA Intergenic MIRc|SINE|MIR 36894 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 0.187 0.073 0.083 1.481 0.069 0.192 0.241 0.974 0.452 3.191 0.463 3.683 0.155 0.095 0.024 0.097 0.021 0.106 0.074 0.077 1013 chr21 37441210 37463938 + 0 NA intron (NR_040084, intron 2 of 3) MER110-int|LTR|ERV1 10352 NM_001757 873 Hs.88778 NM_001757 ENSG00000159228 CBR1 CBR|SDR21C1|hCBR1 carbonyl reductase 1 protein-coding 0.374 0.114 0.278 0.273 0.762 0.378 0.410 0.193 0.579 0.737 0.492 0.731 4.522 0.373 0.064 0.144 0.219 0.012 0.085 0.154 0.509 0.083 1490 chr8 67516736 67527009 + 0 NA intron (NM_001294282, intron 1 of 14) intron (NM_001294282, intron 1 of 14) 3612 NM_001080416 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB MYB proto-oncogene like 1 protein-coding 0.551 0.448 1.484 0.448 1.232 1.136 2.166 1.085 7.325 0.414 0.187 0.506 0.904 1.421 0.923 0.416 0.223 1.136 0.617 0.698 0.236 0.515 1224 chr5 57110448 57142599 + 0 NA Intergenic Intergenic 68466 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA 0.365 1.971 1.047 0.037 2.626 0.580 1.153 1.719 6.793 0.468 0.367 0.527 0.178 0.989 0.581 0.029 0.057 4.449 0.256 5.738 0.031 1.077 368 chr12 110436164 110442247 + 0 NA intron (NM_033121, intron 1 of 14) intron (NM_033121, intron 1 of 14) 1970 NM_033121 88455 Hs.528703 NM_033121 ENSG00000076513 ANKRD13A ANKRD13|NY-REN-25 ankyrin repeat domain 13A protein-coding 1.060 1.079 0.487 0.879 2.788 0.968 2.025 0.774 3.565 1.621 0.368 2.109 1.283 2.888 1.063 0.630 0.419 4.617 0.594 2.212 0.265 5.707 316 chr12 12712664 12716453 + 0 NA intron (NM_030640, intron 1 of 6) intron (NM_030640, intron 1 of 6) 890 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 4.281 1.752 1.604 3.781 6.151 2.889 7.168 0.649 3.042 9.376 2.372 7.702 11.405 3.160 2.946 4.531 4.356 3.782 1.259 2.903 4.159 2.181 994 chr20 62257012 62260590 + 0 NA promoter-TSS (NM_012384) promoter-TSS (NM_012384) 213 NR_132417 100505771 Hs.448392 NR_132417 ENSG00000232442 LOC100505771 - uncharacterized LOC100505771 ncRNA 4.548 2.457 5.162 3.304 12.009 2.352 7.854 3.928 10.391 6.927 2.423 14.924 9.759 4.356 4.334 2.948 2.272 4.954 2.934 2.261 1.382 1.652 611 chr17 27043206 27049786 + 0 NA promoter-TSS (NM_000984) promoter-TSS (NM_000984) -504 NM_000984 6147 Hs.419463 NM_000984 ENSG00000198242 RPL23A L23A|MDA20 ribosomal protein L23a protein-coding 7.424 2.162 7.016 3.426 6.435 2.549 6.802 2.771 13.439 5.539 2.778 10.004 6.291 4.446 2.531 3.273 2.868 4.828 1.905 3.108 1.906 4.007 1370 chr6 138128038 138135343 + 0 NA Intergenic Intergenic -56635 NM_001270508 7128 Hs.211600 NM_006290 ENSG00000118503 TNFAIP3 A20|AISBL|OTUD7C|TNFA1P2 TNF alpha induced protein 3 protein-coding 0.392 0.136 0.162 0.193 0.467 0.106 3.763 0.292 0.151 0.730 0.253 1.753 0.209 0.343 0.695 0.011 0.033 4.192 0.327 0.506 0.157 4.601 849 chr2 61107777 61110544 + 0 NA promoter-TSS (NR_033980) promoter-TSS (NR_033980) 530 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 5.162 0.940 3.629 2.886 11.740 3.173 5.769 4.384 13.375 7.732 3.239 5.905 14.667 4.279 2.480 2.319 2.225 2.040 1.158 1.229 1.505 3.066 11 chr1 8491451 8525586 + 0 NA intron (NM_012102, intron 12 of 23) intron (NM_012102, intron 12 of 23) 23813 NR_125999 102724552 Hs.568612 NR_125999 LOC102724552 - uncharacterized LOC102724552 ncRNA 0.243 0.076 0.165 3.395 0.222 0.096 0.068 0.023 0.080 0.288 0.035 0.328 0.221 0.105 0.229 0.301 0.448 0.099 0.022 0.134 3.294 0.075 492 chr15 72511931 72531586 + 0 NA intron (NM_001206798, intron 1 of 10) MIRc|SINE|MIR 305 NM_001206799 5315 Hs.534770 NM_002654 ENSG00000067225 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase, muscle protein-coding 1.805 1.972 3.900 2.593 6.384 2.779 3.607 1.145 5.859 2.854 1.620 7.040 3.462 2.007 1.780 1.344 1.279 4.548 2.559 4.185 1.725 1.847 208 chr11 693003 699206 + 0 NA promoter-TSS (NM_021008) promoter-TSS (NM_021008) -350 NM_001293634 10522 Hs.243994 NM_021008 ENSG00000177030 DEAF1 MRD24|NUDR|SPN|ZMYND5 DEAF1, transcription factor protein-coding 2.309 1.178 3.470 1.906 3.719 3.163 2.818 0.728 2.841 6.115 1.235 8.774 6.108 2.911 1.168 1.632 1.106 2.940 1.449 1.327 1.035 1.547 511 chr15 96859976 96889536 + 0 NA 5' UTR (NM_021005, exon 1 of 3) 5' UTR (NM_021005, exon 1 of 3) 645 NM_021005 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 1.730 1.822 2.376 0.452 4.557 2.194 2.007 0.381 2.104 0.450 0.823 4.327 1.322 1.926 2.071 1.155 1.198 2.106 0.206 3.198 0.148 3.243 842 chr2 43444952 43456752 + 0 NA 3' UTR (NM_006887, exon 2 of 2) 3' UTR (NM_006887, exon 2 of 2) 2893 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 3.136 1.774 3.272 2.521 7.598 2.973 6.410 0.607 2.857 3.144 1.771 6.628 6.343 3.709 3.847 1.366 1.156 3.129 2.249 2.726 2.022 3.447 1523 chr8 141519722 141529656 + 0 NA intron (NR_040712, intron 2 of 2) intron (NR_040712, intron 2 of 2) 2608 NR_040712 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex 1 protein-coding 1.309 0.611 1.062 3.663 6.283 1.470 5.094 0.836 3.463 3.331 0.786 3.407 2.561 0.871 1.525 2.053 1.427 0.862 1.916 0.873 1.947 0.626 93 chr1 155657308 155659695 + 0 NA promoter-TSS (NM_139119) promoter-TSS (NM_139119) 14 NM_001198902 55249 Hs.584927 NM_018253 ENSG00000163374 YY1AP1 HCCA1|HCCA2|YAP|YY1AP YY1 associated protein 1 protein-coding 9.127 2.593 4.286 8.584 16.230 4.863 7.032 2.538 10.835 10.387 3.147 13.099 16.382 5.279 8.205 5.545 4.429 7.697 3.549 3.602 4.843 4.180 899 chr2 180369456 180433388 + 0 NA intron (NR_104234, intron 4 of 12) L2b|LINE|L2 25893 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 0.198 0.032 0.113 7.606 0.179 0.078 0.209 0.050 0.148 0.243 0.004 0.111 0.137 0.112 0.127 0.331 0.627 0.041 0.009 0.075 7.611 0.050 292 chr11 128075309 128082030 + 0 NA Intergenic Intergenic 313536 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 1.256 1.584 2.358 0.016 0.403 0.454 2.989 1.544 6.936 1.409 0.732 1.798 0.138 0.865 1.590 0.034 0.037 4.842 9.554 4.563 0.051 7.019 291 chr11 126859638 126865295 + 0 NA intron (NM_032531, intron 1 of 16) intron (NM_032531, intron 1 of 16) -4028 NR_036126 100422918 NR_036126 ENSG00000266215 MIR3167 - microRNA 3167 ncRNA 0.188 2.583 0.078 0.265 0.206 0.067 0.033 1.904 6.409 0.197 0.042 0.051 0.135 0.698 0.074 0.037 8.011 6.334 0.061 4.427 374 chr12 122221481 122245409 + 0 NA non-coding (NR_002809, exon 7 of 7) non-coding (NR_002809, exon 7 of 7) -1851 NM_019034 54509 Hs.707579 NM_019034 ENSG00000139725 RHOF ARHF|RIF ras homolog family member F, filopodia associated protein-coding 2.918 1.316 2.218 4.424 9.426 3.389 2.384 0.759 3.359 3.461 1.446 7.982 7.678 3.376 2.415 2.784 2.053 3.072 4.555 2.200 3.492 3.597 199 chr10 114708042 114720114 + 0 NA intron (NM_001198530, intron 3 of 10) intron (NM_001198530, intron 3 of 10) 4069 NM_001146286 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 2.478 0.749 6.699 5.111 8.087 2.353 3.511 0.274 1.206 1.395 0.580 7.554 3.898 2.126 2.810 1.577 1.425 2.241 1.285 1.614 3.986 2.394 114 chr1 180119539 180127787 + 0 NA promoter-TSS (NM_002826) promoter-TSS (NM_002826) -305 NM_002826 5768 Hs.744925 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 1.305 1.591 0.474 0.830 1.143 0.497 3.072 0.954 2.119 1.035 0.418 1.920 1.802 2.295 3.274 0.505 0.426 5.356 0.645 3.231 0.140 4.920 1306 chr6 22652044 22666462 + 0 NA intron (NR_134613, intron 1 of 1) intron (NR_134613, intron 1 of 1) 58900 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 0.209 0.026 0.136 2.237 0.192 0.062 0.058 0.016 0.057 0.213 0.046 0.144 0.111 0.044 0.051 0.089 0.238 0.005 0.012 0.092 5.554 0.085 429 chr14 62161018 62168750 + 0 NA intron (NM_001243084, intron 1 of 14) intron (NM_001243084, intron 1 of 14) 544 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 alpha subunit protein-coding 2.001 1.721 2.433 1.619 3.198 0.952 3.032 1.296 6.408 3.323 0.923 6.346 5.850 2.430 1.699 1.293 0.832 1.785 4.420 2.592 0.644 2.854 1328 chr6 40978860 41007357 + 0 NA Intergenic Charlie5|DNA|hAT-Charlie -2089 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 0.382 0.026 0.237 3.651 0.133 0.061 0.192 0.027 0.119 0.176 0.170 0.355 0.429 0.182 0.283 0.453 0.484 0.355 0.022 0.055 3.051 0.257 1091 chr3 122083199 122086853 + 0 NA intron (NM_001308326, intron 3 of 4) AluSx3|SINE|Alu 17052 NM_001308326 131076 Hs.220594 NM_001017928 ENSG00000160124 CCDC58 - coiled-coil domain containing 58 protein-coding 1.277 1.769 0.145 0.525 0.155 2.398 0.021 0.075 0.530 0.021 3.863 5.309 0.151 1.118 0.064 0.102 0.849 5.329 0.030 0.126 6.604 409 chr14 35824400 35845961 + 0 NA Intergenic Intergenic 38780 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 0.656 0.224 0.170 0.098 0.726 0.584 3.309 0.975 1.576 0.919 0.301 0.929 2.279 0.175 0.305 0.086 0.071 0.783 0.803 0.445 0.091 0.556 73 chr1 145395200 145398124 + 0 NA intron (NM_001039703, intron 68 of 85) AluJb|SINE|Alu -14258 NR_125968 101928979 Hs.735893 NR_125967 ENSG00000233396 LINC01719 - long intergenic non-protein coding RNA 1719 ncRNA 6.671 1.583 1.970 8.084 9.442 2.394 4.346 1.881 9.010 6.890 1.463 5.704 12.262 3.326 2.729 6.293 6.596 3.331 1.803 3.543 4.677 1.994 67 chr1 94697789 94726601 + 0 NA intron (NM_001328664, intron 1 of 22) intron (NM_001328664, intron 1 of 22) 1121 NM_001328665 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 0.428 0.172 2.371 0.059 0.199 0.108 3.397 0.241 0.901 0.137 0.130 0.655 0.460 1.494 0.358 0.049 0.076 2.077 1.147 0.193 0.026 5.853 241 chr11 46400825 46405563 + 0 NA promoter-TSS (NM_002391) promoter-TSS (NM_002391) -11 NM_002391 4192 Hs.82045 NM_002391 ENSG00000110492 MDK ARAP|MK|NEGF2 midkine (neurite growth-promoting factor 2) protein-coding 2.521 1.124 0.499 1.309 3.482 0.404 0.329 0.761 1.789 1.134 0.456 9.209 3.167 2.324 0.658 2.110 1.482 0.486 0.345 1.055 1.152 0.259 795 chr19 42755076 42760751 + 0 NA intron (NM_001312656, intron 1 of 3) CpG 138 NM_001308402 2077 Hs.655969 NM_006494 ENSG00000105722 ERF CHYTS|CRS4|PE-2|PE2 ETS2 repressor factor protein-coding 4.392 1.986 2.535 3.222 7.737 2.825 5.958 0.952 3.436 4.690 1.597 8.134 6.064 4.046 2.839 1.744 1.008 2.318 1.183 2.079 1.677 1.181 812 chr19 49374569 49380410 + 0 NA exon (NM_014330, exon 2 of 3) exon (NM_014330, exon 2 of 3) 1840 NM_014330 23645 Hs.631593 NM_014330 ENSG00000087074 PPP1R15A GADD34 protein phosphatase 1 regulatory subunit 15A protein-coding 6.845 2.014 3.577 1.080 4.368 2.609 6.183 1.376 4.303 3.397 0.673 4.193 6.551 7.551 3.517 0.471 0.559 5.699 5.006 4.755 0.535 3.242 489 chr15 71919376 71986136 + 0 NA intron (NM_001286429, intron 1 of 11) L2a|LINE|L2 31122 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 0.180 0.794 0.197 6.524 0.243 0.113 0.083 0.021 0.082 0.201 0.098 0.283 0.465 0.115 0.138 0.386 0.612 0.152 0.010 2.288 6.777 0.109 1609 chr9 137206726 137225150 + 0 NA Intergenic Intergenic -2371 NM_002957 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 0.815 0.235 2.829 0.296 4.143 1.137 1.289 0.978 3.991 1.742 0.556 2.920 1.898 1.407 0.555 0.509 0.367 0.666 0.032 0.296 0.130 0.340 585 chr16 89983211 89991114 + 0 NA 3' UTR (NM_002386, exon 1 of 1) 3' UTR (NM_002386, exon 1 of 1) -1255 NM_001197181 10381 Hs.511743 NM_006086 ENSG00000258947 TUBB3 CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4 tubulin beta 3 class III protein-coding 1.847 0.971 3.883 1.359 1.676 2.868 2.991 1.600 7.690 1.064 1.304 4.880 0.537 2.246 1.497 2.214 1.371 2.205 1.682 1.339 0.649 0.481 794 chr19 42720442 42725472 + 0 NA intron (NM_001270614, intron 1 of 4) AluSz|SINE|Alu -1013 NM_133328 162989 Hs.515432 NM_133328 ENSG00000160570 DEDD2 FLAME-3|FLAME3 death effector domain containing 2 protein-coding 4.071 1.526 1.810 4.272 4.937 2.140 6.690 1.415 3.976 6.744 1.100 3.598 9.658 5.670 2.074 1.220 1.014 1.700 1.811 1.474 2.222 1.401 327 chr12 27483035 27499875 + 0 NA intron (NM_001248005, intron 1 of 13) intron (NM_001248005, intron 1 of 13) 5668 NM_001248002 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 3.947 0.610 0.635 0.292 0.793 0.835 3.060 0.405 0.783 2.870 2.430 4.869 5.715 1.068 1.582 0.333 0.202 3.170 3.110 1.504 0.069 2.075 1392 chr7 17336285 17346983 + 0 NA intron (NM_001621, intron 1 of 10) intron (NM_001621, intron 1 of 10) 3358 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 1.956 0.521 2.733 0.780 2.619 0.585 5.581 0.697 2.177 1.658 0.684 5.429 3.363 2.991 2.063 0.960 0.735 1.006 1.466 0.667 0.376 1.919 1080 chr3 69809766 69816130 + 0 NA promoter-TSS (NM_006722) promoter-TSS (NM_006722) -14 NM_006722 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|MI|WS2|WS2A|bHLHe32 melanogenesis associated transcription factor protein-coding 0.177 0.156 4.112 0.118 1.293 0.653 2.522 0.289 0.608 0.147 0.026 0.133 0.095 0.631 1.591 0.072 0.210 0.384 0.113 0.532 0.252 4.697 944 chr20 30145497 30164703 + 0 NA TTS (NR_046853) TTS (NR_046853) 5966 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 3.236 1.109 1.785 2.459 5.375 4.829 2.143 0.948 2.840 1.960 1.687 7.852 7.246 1.153 1.577 1.293 1.231 3.732 3.508 1.774 2.176 1.148 1281 chr5 176920563 176925056 + 0 NA intron (NM_213636, intron 2 of 7) intron (NM_213636, intron 2 of 7) 1797 NM_203352 9260 Hs.533040 NM_005451 ENSG00000196923 PDLIM7 LMP1|LMP3 PDZ and LIM domain 7 protein-coding 2.393 1.736 4.882 1.223 3.706 1.891 3.384 1.538 4.539 2.408 1.278 6.888 7.142 3.980 3.729 0.762 0.576 5.510 4.921 2.873 0.792 4.262 1113 chr3 160115867 160124580 + 0 NA intron (NM_001002800, intron 3 of 23) intron (NM_001002800, intron 3 of 23) 1876 NM_005496 10051 Hs.58992 NM_005496 ENSG00000113810 SMC4 CAP-C|CAPC|SMC-4|SMC4L1 structural maintenance of chromosomes 4 protein-coding 2.099 1.628 2.949 5.276 10.878 1.409 4.612 1.446 7.754 4.999 2.162 6.321 7.861 2.991 1.856 2.052 1.864 3.577 1.996 3.431 4.213 4.034 674 chr17 48783473 48799781 + 0 NA Intergenic AluJb|SINE|Alu -5278 NM_001330330 51747 Hs.130293 NM_006107 ENSG00000108848 LUC7L3 CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A LUC7 like 3 pre-mRNA splicing factor protein-coding 2.125 0.600 1.939 2.277 3.974 1.383 2.564 0.570 2.726 2.833 1.156 3.006 6.257 1.243 1.209 1.040 0.912 1.386 0.670 0.987 1.496 1.152 732 chr18 55372153 55387322 + 0 NA intron (NM_005603, intron 2 of 27) L1M1|LINE|L1 82203 NM_001242804 100505549 Hs.660645 NM_001242804 LOC100505549 - uncharacterized LOC100505549 protein-coding 0.428 0.082 0.247 3.604 0.523 0.070 0.214 0.026 0.145 0.417 0.130 0.604 0.799 0.465 0.089 0.428 0.721 0.139 0.052 0.277 3.090 0.056 1317 chr6 31151128 31156198 + 0 NA Intergenic Harlequin-int|LTR|ERV1 -7987 NR_026816 100130889 Hs.670091 NM_001134284 ENSG00000204528 PSORS1C3 NCRNA00196 psoriasis susceptibility 1 candidate 3 (non-protein coding) ncRNA 0.107 0.024 6.371 0.105 2.944 0.075 3.152 0.124 0.122 0.327 1.252 8.075 0.681 1.306 0.081 0.045 1.320 0.165 0.131 0.023 1.566 280 chr11 93470118 93479656 + 0 NA promoter-TSS (NM_024116) promoter-TSS (NM_024116) 127 NM_001286068 28970 Hs.8360 NM_014039 ENSG00000182919 C11orf54 PTD012|PTOD012 chromosome 11 open reading frame 54 protein-coding 2.635 1.181 3.099 3.418 1.823 2.216 2.662 0.604 3.658 2.890 0.853 3.973 3.472 1.406 1.496 0.965 1.128 1.856 0.875 1.791 2.362 2.880 957 chr20 34539396 34567662 + 0 NA Intergenic Intergenic -2974 NR_130714 140894 Hs.732697 NM_080834 ENSG00000149646 CNBD2 C20orf152|CNMPD1 cyclic nucleotide binding domain containing 2 protein-coding 0.977 0.136 0.815 7.452 1.361 0.558 0.847 0.310 0.900 0.929 0.418 1.391 1.801 1.114 0.496 1.054 1.077 0.360 0.353 0.267 6.036 0.243 273 chr11 67111881 67127235 + 0 NA intron (NM_001256870, intron 2 of 2) intron (NM_001256870, intron 2 of 2) 1509 NM_001256870 57804 Hs.523829 NM_021173 ENSG00000175482 POLD4 POLDS|p12 DNA polymerase delta 4, accessory subunit protein-coding 2.725 0.718 3.025 0.543 1.392 0.671 2.025 0.680 1.916 0.804 0.324 3.406 1.195 1.476 1.508 0.423 0.457 2.154 1.391 1.195 0.315 2.750 1603 chr9 135544254 135547060 + 0 NA non-coding (NR_136309, exon 1 of 19) non-coding (NR_136309, exon 1 of 19) 131 NM_001322341 64794 Hs.660767 NM_022779 ENSG00000125485 DDX31 PPP1R25 DEAD-box helicase 31 protein-coding 2.920 2.473 9.946 3.357 9.732 3.267 4.185 2.298 8.874 11.044 2.621 7.879 6.734 3.396 2.627 4.348 2.557 3.285 2.997 2.388 2.462 1.426 471 chr15 59223362 59227689 + 0 NA intron (NM_001013843, intron 1 of 20) CpG 350 NM_024755 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 3.676 3.233 4.492 5.637 10.039 3.118 4.157 1.370 6.900 4.677 2.333 9.805 8.666 2.641 2.329 2.636 2.403 3.645 4.733 7.113 4.680 2.551 622 chr17 35712760 35717806 + 0 NA intron (NM_198839, intron 4 of 59) intron (NM_198839, intron 4 of 59) 776 NM_198836 31 Hs.160556 NM_000664 ENSG00000278540 ACACA ACAC|ACACAD|ACC|ACC1|ACCA acetyl-CoA carboxylase alpha protein-coding 3.866 1.350 2.197 5.403 8.413 2.932 2.499 0.346 1.755 2.361 1.990 6.575 4.662 3.034 1.262 1.587 1.459 1.209 1.777 1.560 2.773 7.492 1503 chr8 102209084 102220573 + 0 NA intron (NM_001042510, intron 1 of 4) L1ME3|LINE|L1 3132 NM_001042510 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 1.116 0.733 1.237 1.589 2.354 1.026 8.478 0.794 3.442 4.426 0.618 3.029 6.399 1.227 1.482 1.283 1.202 0.826 2.669 1.433 1.005 0.898 970 chr20 48748188 48790254 + 0 NA intron (NR_027889, intron 1 of 6) intron (NR_027889, intron 1 of 6) 1114 NM_001162505 387521 Hs.744839 NM_199129 ENSG00000240849 TMEM189 KUA transmembrane protein 189 protein-coding 0.987 0.306 0.886 0.810 1.704 0.388 0.921 0.548 1.426 0.881 0.898 3.338 4.428 1.585 0.594 0.186 0.233 1.448 1.152 0.564 0.426 0.440 1509 chr8 106330272 106335143 + 0 NA intron (NM_012082, intron 1 of 7) intron (NM_012082, intron 1 of 7) 1560 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 0.370 2.409 0.319 0.263 0.489 0.063 2.224 0.421 1.457 0.398 0.069 0.213 0.663 1.384 0.128 0.740 0.689 0.782 0.009 4.191 0.121 0.058 1416 chr7 55432772 55435591 + 0 NA intron (NM_018697, intron 1 of 8) CpG 1040 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 5.562 2.578 5.239 6.257 6.209 3.318 13.900 2.080 5.612 7.827 2.136 12.698 15.782 6.522 5.396 3.904 3.424 3.583 3.350 3.079 3.826 2.957 24 chr1 23691964 23711072 + 0 NA Intergenic AluY|SINE|Alu -5161 NM_001077195 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 1.153 0.599 0.771 0.845 2.372 0.792 1.317 0.388 1.632 1.735 0.841 2.844 5.203 1.209 0.915 0.561 0.515 0.880 0.643 0.809 0.644 0.626 1325 chr6 35451919 35456513 + 0 NA intron (NM_003214, intron 2 of 12) CpG 10645 NM_003214 7005 Hs.485205 NM_003214 ENSG00000007866 TEAD3 DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5 TEA domain transcription factor 3 protein-coding 1.362 1.078 0.232 0.071 3.684 0.135 0.423 0.496 0.898 1.637 2.794 4.671 6.670 1.482 1.345 0.543 0.633 6.225 2.319 1.961 0.025 5.118 104 chr1 161101652 161104543 + 0 NA promoter-TSS (NM_032998) promoter-TSS (NM_032998) -619 NM_001039711 9191 Hs.744092 NM_004216 ENSG00000158796 DEDD CASP8IP1|DEDD1|DEFT|FLDED1|KE05 death effector domain containing protein-coding 5.729 2.092 2.384 5.753 7.147 2.591 4.404 1.479 5.306 8.679 1.368 7.082 11.231 4.617 4.810 2.544 2.474 5.414 1.426 3.330 3.166 3.293 131 chr1 225611035 225617718 + 0 NA intron (NM_194442, intron 1 of 13) intron (NM_194442, intron 1 of 13) 1439 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 3.601 0.667 1.470 3.608 5.675 2.081 2.285 0.986 3.743 4.009 2.598 5.572 10.345 2.914 2.245 2.190 1.627 3.721 1.835 1.385 2.354 4.463 1565 chr9 73024775 73037285 + 0 NA Intergenic MIRb|SINE|MIR -1457 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 2.691 1.623 2.185 4.202 3.596 1.758 3.021 1.257 6.105 2.656 1.039 1.303 4.589 2.114 1.156 4.109 3.113 2.135 1.649 3.061 2.306 0.346 1558 chr9 33288546 33291659 + 0 NA promoter-TSS (NM_147134) promoter-TSS (NM_147134) -313 NM_002504 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 4.822 0.700 3.007 3.568 5.334 1.894 6.029 1.782 6.796 9.477 1.196 7.077 6.780 2.562 2.756 2.679 1.970 2.534 2.277 0.963 2.612 1.617 502 chr15 80798427 80802797 + 0 NA intron (NM_014862, intron 6 of 18) intron (NM_014862, intron 6 of 18) 54673 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 0.096 2.194 0.125 0.130 0.164 0.035 0.401 0.847 2.297 0.225 0.126 0.064 0.183 0.096 0.166 0.091 0.055 0.078 0.010 4.451 0.104 1286 chr5 180257198 180259601 + 0 NA non-coding (NR_045680, exon 1 of 1) non-coding (NR_045680, exon 1 of 1) 219 NR_045680 100859930 Hs.655606 NR_045680 ENSG00000278970 HEIH HCCAT2|LINC-HEIH|LINC00848|lncRNA-HEIH hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA ncRNA 4.390 1.803 6.896 6.438 7.000 2.848 6.481 1.344 6.288 6.533 3.525 9.830 21.303 5.056 6.529 5.927 4.530 3.988 2.883 2.218 5.773 2.243 314 chr12 10363548 10381978 + 0 NA intron (NM_031412, intron 2 of 3) intron (NM_031412, intron 2 of 3) 7274 NM_031412 23710 Hs.524250 NM_031412 ENSG00000139112 GABARAPL1 APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1 GABA type A receptor associated protein like 1 protein-coding 0.915 0.290 0.292 0.209 0.793 0.458 1.127 0.068 0.238 1.056 0.601 0.898 4.215 0.886 0.421 0.549 0.639 0.309 0.401 0.500 0.150 0.237 1237 chr5 126110156 126116417 + 0 NA exon (NM_005573, exon 1 of 11) exon (NM_005573, exon 1 of 11) 441 NM_001198557 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 2.202 0.930 5.414 6.862 5.027 3.595 4.850 0.931 5.059 2.038 1.594 1.765 14.316 3.489 2.343 2.092 1.707 4.519 2.907 1.601 4.886 2.193 1513 chr8 123690081 123708244 + 0 NA intron (NR_126348, intron 2 of 3) Charlie15a|DNA|hAT-Charlie 7183 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 1.157 0.430 0.327 0.288 0.491 0.098 1.612 1.682 3.636 0.281 0.040 0.275 0.313 0.290 0.245 0.060 0.101 1.568 0.018 1.074 0.117 2.174 1502 chr8 102148985 102186551 + 0 NA Intergenic Intergenic 50192 NM_001042510 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 0.456 0.249 0.443 0.482 0.422 0.120 0.982 0.329 0.709 1.774 0.717 0.665 4.582 0.412 0.302 0.176 0.351 0.370 0.404 0.489 0.229 0.675 1264 chr5 151149509 151154634 + 0 NA promoter-TSS (NR_132345) promoter-TSS (NR_132345) -334 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 2.492 1.768 6.522 7.186 8.257 3.700 5.956 1.304 6.257 3.373 1.478 5.407 6.765 6.732 1.991 3.364 1.904 3.267 2.711 3.004 3.846 1.865 355 chr12 66134511 66138346 + 0 NA Intergenic Intergenic -81812 NM_003484 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 0.756 0.355 0.662 0.251 4.873 1.328 0.170 0.017 0.993 0.943 12.113 1.366 0.299 1.481 0.776 0.754 0.036 1.062 0.203 0.180 0.529 159 chr10 3802801 3808254 + 0 NA Intergenic Intergenic 21946 NM_001300 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 0.962 0.691 2.671 0.109 0.336 1.325 0.222 1.298 2.108 0.262 0.221 1.313 0.078 1.490 0.572 0.013 0.057 2.558 4.683 1.914 0.054 4.378 553 chr16 53112469 53138251 + 0 NA intron (NM_025134, intron 1 of 38) MIRb|SINE|MIR 36415 NM_025134 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 0.679 0.322 1.216 1.893 2.721 0.399 0.332 0.092 0.439 0.786 0.869 1.739 2.203 0.377 0.270 0.237 0.250 0.347 0.883 0.732 1.985 0.565 747 chr19 11848136 11851452 + 0 NA promoter-TSS (NM_001080493) promoter-TSS (NM_001080493) 30 NM_017507 55552 Hs.142167 NM_017507 ENSG00000197933 ZNF823 HSZFP36 zinc finger protein 823 protein-coding 1.960 0.523 7.885 2.640 4.214 0.872 5.115 0.956 2.888 2.320 0.920 3.176 5.838 1.715 1.129 1.506 0.988 2.249 0.951 1.303 2.045 0.999 1252 chr5 139015361 139054534 + 0 NA intron (NM_001317205, intron 1 of 2) intron (NM_001317205, intron 1 of 2) -4193 NM_001317207 51523 Hs.189119 NM_016463 ENSG00000171604 CXXC5 CF5|HSPC195|RINF|WID CXXC finger protein 5 protein-coding 1.055 0.651 2.047 0.480 1.195 0.887 3.261 0.582 1.884 0.293 0.211 2.527 0.448 2.780 1.085 0.328 0.247 1.317 0.473 0.946 0.227 0.546 555 chr16 57289109 57301493 + 0 NA intron (NM_015993, intron 2 of 3) intron (NM_015993, intron 2 of 3) 16263 NM_012106 23568 Hs.632873 NM_012106 ENSG00000102931 ARL2BP BART|BART1|RP66 ADP ribosylation factor like GTPase 2 binding protein protein-coding 1.614 0.209 0.320 0.278 0.818 0.400 0.420 0.078 0.085 0.820 1.386 3.404 3.689 0.369 0.286 0.145 0.160 0.285 0.583 0.433 0.232 0.262 1037 chr22 38282564 38307560 + 0 NA Intergenic Intergenic -7093 NM_033386 85377 Hs.517610 NM_033386 ENSG00000100139 MICALL1 MICAL-L1|MIRAB13 MICAL like 1 protein-coding 0.720 0.639 0.253 0.261 3.043 0.144 0.754 0.452 1.024 2.317 1.162 3.241 4.820 0.730 0.213 0.246 0.135 0.670 0.254 1.082 0.087 0.649 47 chr1 44394034 44414808 + 0 NA Intergenic Intergenic 5429 NM_057090 9048 Hs.632404 NM_003976 ENSG00000117407 ARTN ART|ENOVIN|EVN|NBN artemin protein-coding 0.806 0.358 0.376 14.058 1.380 0.439 0.786 0.898 2.731 2.142 0.698 3.219 5.136 0.943 0.331 0.645 0.606 0.656 0.283 0.474 6.351 0.277 1427 chr7 74069661 74078854 + 0 NA intron (NM_001163636, intron 1 of 33) intron (NM_001163636, intron 1 of 33) 2266 NM_001163636 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 4.054 1.024 4.183 3.620 8.159 2.670 4.780 1.096 4.794 5.409 1.469 10.525 10.873 8.246 3.059 3.294 2.095 2.939 2.224 1.466 2.463 2.251 1484 chr8 49827213 49844073 + 0 NA Intergenic Intergenic -1644 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 0.147 0.198 0.512 0.146 4.681 0.068 0.260 1.355 5.118 1.369 0.597 2.160 2.808 1.025 0.353 0.162 0.251 0.857 0.505 0.470 0.082 0.078 37 chr1 33166935 33170856 + 0 NA promoter-TSS (NM_001161708) promoter-TSS (NM_001161708) -534 NM_030786 81493 Hs.712631 NM_030786 ENSG00000162520 SYNC SYNC1|SYNCOILIN syncoilin, intermediate filament protein protein-coding 0.294 3.802 0.368 0.055 0.830 0.256 0.209 0.530 2.102 1.043 0.335 0.963 0.418 1.098 0.320 0.303 0.214 2.819 0.053 7.683 0.089 0.049 1017 chr21 40274165 40298447 + 0 NA intron (NR_120405, intron 2 of 3) (CA)n|Simple_repeat|Simple_repeat 24047 NR_120405 400867 Hs.689509 NR_120405 LOC400867 - uncharacterized LOC400867 ncRNA 1.745 0.095 0.164 0.236 2.286 0.071 0.347 0.212 0.400 0.879 1.051 3.248 1.746 0.299 0.229 0.280 0.540 0.181 0.014 0.120 0.195 0.238 855 chr2 70350724 70370934 + 0 NA Intergenic Intergenic -8381 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 2.523 0.772 2.111 1.956 2.099 1.549 3.714 0.886 2.523 1.707 0.523 1.757 2.035 1.688 1.912 0.656 0.542 1.735 0.916 1.711 1.354 1.210 270 chr11 65654965 65660346 + 0 NA promoter-TSS (NM_006848) promoter-TSS (NM_006848) -220 NM_006848 11007 Hs.66713 NM_006848 ENSG00000175602 CCDC85B DIPA coiled-coil domain containing 85B protein-coding 3.511 1.818 3.129 2.160 5.636 3.713 5.949 2.031 7.530 2.139 1.426 6.983 4.875 2.651 3.622 1.857 1.197 4.491 3.665 3.557 0.704 3.565 195 chr10 99442785 99451359 + 0 NA promoter-TSS (NM_021732) promoter-TSS (NM_021732) -57 NM_021732 60370 Hs.23918 NM_021732 ENSG00000119986 AVPI1 PP5395|VIP32|VIT32 arginine vasopressin induced 1 protein-coding 0.833 0.881 0.596 0.409 5.095 4.023 2.826 0.805 3.243 1.073 0.599 5.863 5.222 3.851 1.068 0.229 0.343 1.439 0.495 1.544 0.201 0.632 1057 chr3 11313710 11334194 + 0 NA intron (NM_001136031, intron 1 of 17) intron (NM_001136031, intron 1 of 17) 9942 NM_001144912 10533 Hs.38032 NM_006395 ENSG00000197548 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 0.440 1.322 0.619 0.304 0.554 0.333 2.653 0.474 1.328 0.465 0.067 0.700 0.402 0.918 0.430 0.061 0.096 3.023 0.876 3.850 0.116 0.782 538 chr16 28832668 28837952 + 0 NA intron (NM_001308230, intron 1 of 22) CpG 941 NM_148415 11273 Hs.460499 NM_007245 ENSG00000168488 ATXN2L A2D|A2LG|A2LP|A2RP ataxin 2 like protein-coding 3.380 2.062 4.975 7.111 9.957 3.402 8.904 1.103 4.889 6.521 1.809 9.112 13.201 3.240 2.736 2.473 1.419 4.183 2.595 2.491 3.169 1.840 679 chr17 56083122 56086069 + 0 NA non-coding (NR_034041, exon 1 of 4) non-coding (NR_034041, exon 1 of 4) 112 NR_034041 6426 Hs.68714 NM_006924 ENSG00000136450 SRSF1 ASF|SF2|SF2p33|SFRS1|SRp30a serine and arginine rich splicing factor 1 protein-coding 7.581 2.046 6.361 8.891 12.286 5.828 9.698 1.893 10.625 8.465 4.122 12.568 17.744 6.698 5.790 3.920 3.017 6.829 4.430 2.644 7.421 4.173 680 chr17 56428138 56496061 + 0 NA intron (NM_017763, intron 2 of 9) intron (NM_017763, intron 2 of 9) 17983 NM_001305545 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 0.842 0.167 0.444 6.469 0.548 0.508 0.673 0.082 0.213 0.898 0.633 1.389 1.944 0.249 0.598 1.053 1.789 0.099 0.150 0.367 7.803 0.437 831 chr2 8815746 8826647 + 0 NA promoter-TSS (NM_002166) promoter-TSS (NM_002166) 795 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 (head to head) ncRNA 3.729 1.091 0.901 4.539 13.098 4.350 3.349 0.489 1.589 4.508 0.660 4.329 10.102 3.325 1.616 3.606 2.835 1.001 0.023 1.247 4.668 1.527 1602 chr9 132359678 132390581 + 0 NA intron (NM_199350, intron 6 of 6) (GGGGA)n|Simple_repeat|Simple_repeat 3966 NM_001286796 28989 Hs.744027 NM_014064 ENSG00000148335 NTMT1 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 0.754 0.520 0.513 0.592 2.068 1.735 0.478 1.007 2.880 1.068 0.609 1.830 1.058 0.963 0.346 0.513 0.467 0.384 0.280 0.745 0.710 0.205 1147 chr3 187453579 187469387 + 0 NA intron (NM_001706, intron 1 of 9) intron (NM_001706, intron 1 of 9) 2030 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 2.124 1.058 3.014 2.872 nan 1.146 2.824 1.814 5.603 3.772 1.718 5.261 9.403 1.919 1.693 1.842 2.321 1.034 1.739 1.715 1.657 3.183 521 chr16 1127619 1142146 + 0 NA Intergenic Intergenic 6101 NM_001053 6755 Hs.449840 NM_001053 ENSG00000162009 SSTR5 SS-5-R somatostatin receptor 5 protein-coding 0.152 0.188 3.651 0.125 2.593 0.079 1.261 0.043 0.118 0.378 0.571 6.971 0.567 0.183 0.050 0.005 0.034 0.033 0.037 0.253 0.024 0.046 1332 chr6 42417293 42422198 + 0 NA promoter-TSS (NM_001297573) promoter-TSS (NM_001297573) 44 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 2.249 1.479 5.948 1.591 3.574 3.028 5.768 2.169 7.780 1.175 1.735 4.882 4.168 0.911 1.873 1.414 1.116 6.598 1.764 1.413 1.030 1.197 162 chr10 3891538 3897849 + 0 NA Intergenic Intergenic 18551 NR_134490 105376365 Hs.460114 NR_134490 ENSG00000230573 LOC105376365 - uncharacterized LOC105376365 ncRNA 1.787 0.465 2.165 0.102 0.623 0.471 1.364 2.336 5.090 0.485 0.241 1.245 1.058 0.785 0.377 0.048 2.100 1.583 1.252 0.055 3.009 1241 chr5 132297293 132300271 + 0 NA intron (NM_014423, intron 1 of 20) intron (NM_014423, intron 1 of 20) 572 NM_014423 27125 Hs.519313 NM_014423 ENSG00000072364 AFF4 AF5Q31|CHOPS|MCEF AF4/FMR2 family member 4 protein-coding 2.805 2.835 8.993 6.789 3.020 4.565 7.124 1.313 5.945 4.711 1.125 7.539 7.400 8.516 2.968 1.407 1.468 3.651 2.755 3.607 3.994 2.911 433 chr14 68400956 68414135 + 0 NA intron (NM_001321809, intron 7 of 11) intron (NM_001321809, intron 7 of 11) 117236 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 0.626 0.185 0.373 0.527 0.839 0.137 2.007 1.475 4.476 0.655 0.134 0.709 0.590 0.190 0.743 0.167 0.257 0.619 0.148 0.407 0.803 0.143 880 chr2 135115596 135178079 + 0 NA intron (NM_002410, intron 10 of 15) intron (NM_002410, intron 10 of 15) 135007 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase protein-coding 0.226 0.246 0.114 4.560 0.156 1.214 0.091 0.020 0.076 0.255 0.075 0.184 0.278 0.107 0.202 1.815 2.277 0.122 0.017 0.568 5.536 0.070 1441 chr7 99148734 99162252 + 0 NA promoter-TSS (NM_001085366) promoter-TSS (NM_001085366) -552 NM_001085366 79027 Hs.599798 NM_024061 ENSG00000197343 ZNF655 VIK|VIK-1 zinc finger protein 655 protein-coding 2.298 1.348 2.690 2.215 2.030 1.680 1.210 0.998 4.099 0.854 0.383 6.209 5.446 4.019 1.273 0.890 0.637 3.954 3.428 2.944 0.928 1.282 647 chr17 41463318 41487994 + 0 NA promoter-TSS (NM_001661) promoter-TSS (NM_001661) -697 NM_001661 379 Hs.183153 NM_001661 ENSG00000175906 ARL4D ARF4L|ARL6 ADP ribosylation factor like GTPase 4D protein-coding 1.625 0.724 1.257 0.884 2.370 1.791 2.755 0.675 2.279 1.641 1.753 3.481 6.193 1.554 0.735 0.651 0.663 1.042 0.454 0.948 0.352 0.824 1399 chr7 26234975 26244229 + 0 NA intron (NM_031243, intron 1 of 11) CpG 811 NM_031243 3181 Hs.487774 NM_002137 ENSG00000122566 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 4.395 3.064 4.947 6.080 8.310 3.717 6.544 1.534 8.038 5.427 1.743 9.452 6.978 6.978 3.088 2.833 2.329 4.436 3.119 4.451 4.096 3.570 1206 chr5 1342638 1346485 + 0 NA exon (NM_030782, exon 2 of 17) exon (NM_030782, exon 2 of 17) 624 NM_030782 81037 Hs.444673 NM_030782 ENSG00000049656 CLPTM1L CRR9 CLPTM1 like protein-coding 1.780 0.966 1.413 1.834 4.263 1.669 13.613 1.038 3.505 4.279 1.431 6.693 4.108 2.591 2.922 2.079 1.369 1.892 1.420 0.837 0.656 0.466 334 chr12 46118368 46128416 + 0 NA promoter-TSS (NM_152641) promoter-TSS (NM_152641) -100 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|p200 AT-rich interaction domain 2 protein-coding 2.881 2.884 3.101 5.585 9.248 2.812 3.570 0.440 2.745 4.143 1.374 5.622 8.269 3.888 2.476 4.995 4.748 2.613 1.823 5.652 5.462 2.293 786 chr19 40446601 40452844 + 0 NA Intergenic PRIMA41-int|LTR|ERV1 -9189 NM_003890 8857 Hs.111732 NM_003890 ENSG00000275395 FCGBP FC(GAMMA)BP Fc fragment of IgG binding protein protein-coding 0.138 0.040 18.901 0.034 0.139 0.123 3.756 0.178 0.228 0.239 0.129 0.590 0.204 0.136 0.284 0.012 0.040 0.129 0.120 0.055 0.927 986 chr20 52383654 52395335 + 0 NA Intergenic AluSg|SINE|Alu 102754 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 0.519 0.668 0.557 0.094 0.544 0.414 3.697 2.974 8.334 0.493 0.594 0.276 0.433 1.747 1.151 0.046 0.126 7.063 0.197 1.964 0.072 2.033 1117 chr3 168851027 168868515 + 0 NA intron (NM_004991, intron 3 of 16) intron (NM_004991, intron 3 of 16) 4322 NM_001105077 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 1.019 0.050 0.457 0.122 3.276 0.318 1.591 0.405 1.793 0.350 0.238 5.243 0.870 0.160 0.319 0.107 0.173 1.492 0.638 0.070 0.046 1.747 740 chr19 1746105 1750213 + 0 NA Intergenic Intergenic -5503 NM_001080488 390874 Hs.654347 NM_001080488 ENSG00000205922 ONECUT3 OC3 one cut homeobox 3 protein-coding 0.797 0.587 0.201 0.150 3.559 0.132 0.809 0.056 0.238 7.575 1.425 7.894 6.375 0.389 1.149 0.264 0.149 3.124 6.362 1.196 0.003 3.197 1008 chr21 36418286 36425201 + 0 NA promoter-TSS (NM_001754) promoter-TSS (NM_001754) -148 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 1.092 0.448 1.976 4.077 2.534 0.250 5.647 1.559 4.793 2.239 0.772 2.151 0.168 1.071 1.646 1.925 2.328 3.661 3.236 1.022 2.923 5.002 1027 chr22 29194821 29197521 + 0 NA intron (NM_001079539, intron 1 of 5) CpG 389 NM_001079539 7494 Hs.437638 NM_005080 ENSG00000100219 XBP1 TREB-5|TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding 8.730 1.868 5.820 7.972 12.010 2.940 8.135 1.546 9.501 11.114 2.600 7.482 12.976 5.430 4.110 2.781 1.962 2.445 1.080 2.508 2.827 1.091 103 chr1 160982724 160993899 + 0 NA intron (NM_016946, intron 1 of 9) intron (NM_016946, intron 1 of 9) 2822 NM_016946 50848 Hs.517293 NM_016946 ENSG00000158769 F11R CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1 F11 receptor protein-coding 2.333 0.762 0.436 1.378 2.008 0.273 1.404 0.147 0.203 2.508 0.531 3.206 5.767 0.488 1.637 0.650 0.596 0.455 1.214 1.491 0.536 3.325 201 chr10 114882432 114893795 + 0 NA intron (NM_001146283, intron 5 of 12) intron (NM_001146283, intron 5 of 12) 82999 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 0.183 0.174 4.780 0.762 0.432 0.125 0.132 0.035 0.116 0.211 0.063 0.531 0.350 0.154 0.128 0.184 0.354 0.036 0.052 0.216 0.589 0.069 871 chr2 113992029 114008940 + 0 NA intron (NM_013992, intron 4 of 8) L2b|LINE|L2 6638 NR_015377 654433 Hs.656660 NR_015377 ENSG00000189223 PAX8-AS1 - PAX8 antisense RNA 1 ncRNA 0.709 0.956 2.961 0.544 2.117 0.164 1.386 1.505 5.432 0.612 0.268 0.595 0.574 2.767 0.350 0.079 0.064 2.105 1.250 2.114 0.231 1.746 1401 chr7 27181235 27183336 + 0 NA intron (NM_019102, intron 1 of 1) intron (NM_019102, intron 1 of 1) 1002 NM_019102 3202 Hs.655218 NM_019102 ENSG00000106004 HOXA5 HOX1|HOX1.3|HOX1C homeobox A5 protein-coding 2.720 4.771 0.079 0.153 3.803 0.656 0.131 0.033 1.233 0.155 2.124 1.205 0.056 0.020 4.662 0.054 423 chr14 55536869 55546370 + 0 NA Intergenic Intergenic 23257 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 0.319 0.299 0.217 0.092 2.651 3.564 0.458 0.247 0.427 0.774 0.059 0.733 1.018 0.346 0.197 0.113 0.064 0.934 0.009 0.409 0.048 0.883 719 chr18 6621541 6634439 + 0 NA Intergenic Intergenic 101871 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 0.195 0.682 0.054 0.038 0.218 0.023 0.316 1.584 7.221 0.223 0.107 0.095 0.214 0.498 0.089 0.024 0.057 0.086 0.006 2.083 0.055 0.103 1139 chr3 181654590 181675977 + 0 NA Intergenic Intergenic -4869 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 0.185 0.029 0.130 4.682 nan 0.039 0.120 0.038 0.155 1.695 1.112 0.764 2.043 0.050 0.063 0.662 1.332 0.013 0.010 0.068 7.439 0.089 1319 chr6 31701440 31709086 + 0 NA promoter-TSS (NM_001287593) promoter-TSS (NM_001287593) -168 NM_001287593 1192 Hs.414565 NM_001288 ENSG00000213719 CLIC1 G6|NCC27 chloride intracellular channel 1 protein-coding 5.104 1.377 8.046 2.824 4.794 3.896 7.251 2.262 8.005 2.911 1.929 7.494 7.330 3.031 3.967 1.638 1.773 6.982 4.998 2.296 2.940 6.608 1529 chr8 144813303 144823490 + 0 NA intron (NR_033849, intron 2 of 3) AluSq2|SINE|Alu 2086 NR_033849 100128338 Hs.493171 NR_033849 ENSG00000203499 FAM83H-AS1 onco-lncRNA-3 FAM83H antisense RNA 1 (head to head) ncRNA 4.654 0.591 0.275 1.422 13.119 0.832 2.335 0.149 0.189 8.998 3.070 13.338 5.928 0.399 1.319 4.122 3.022 0.106 2.619 0.557 0.802 1.308 902 chr2 192030028 192039250 + 0 NA Intergenic Intergenic -18317 NM_001243835 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 0.578 0.509 0.168 0.128 6.406 0.485 4.069 0.938 2.422 2.023 2.230 2.896 2.203 0.628 0.383 0.068 0.066 1.974 0.098 1.450 0.109 5.634 1222 chr5 52322950 52329063 + 0 NA intron (NR_073106, intron 2 of 29) intron (NR_073106, intron 2 of 29) 40850 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 0.282 0.425 0.308 0.227 0.995 1.575 3.657 0.101 0.161 0.394 0.885 2.396 4.391 0.389 2.324 0.038 0.060 0.829 3.165 1.248 0.131 0.820 827 chr19 58891248 58899769 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR 2717 NR_039910 100616168 NR_039910 ENSG00000266640 MIR4754 mir-4754 microRNA 4754 ncRNA 4.682 1.889 2.372 1.944 6.620 2.030 2.679 0.983 3.389 4.312 1.066 4.633 5.696 2.284 2.257 1.386 0.871 1.639 1.863 2.323 1.257 0.723 266 chr11 65236435 65278444 + 0 NA Intergenic Intergenic -7770 NR_144567 378938 Hs.621695 NR_002819 MALAT1 HCN|LINC00047|NCRNA00047|NEAT2|PRO2853 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 3.424 2.196 3.527 5.255 7.650 6.038 6.315 2.723 12.636 4.366 2.037 6.019 6.521 4.131 2.813 1.140 1.147 3.827 2.525 4.364 3.559 4.571 1353 chr6 100700981 100754538 + 0 NA Intergenic HAL1|LINE|L1 183792 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 single-minded family bHLH transcription factor 1 protein-coding 0.260 0.220 0.332 0.092 0.423 0.357 0.549 1.126 7.307 0.125 0.018 0.565 0.083 0.243 0.237 0.034 0.077 1.131 0.499 0.523 0.064 0.415 174 chr10 32225572 32234412 + 0 NA Intergenic AmnSINE1|SINE|Deu -12188 NM_001270698 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 1.868 0.448 1.459 0.758 1.087 1.328 2.736 0.710 2.176 0.624 0.119 1.768 0.710 0.621 0.999 0.159 0.427 2.578 1.712 1.525 1.077 7.010 820 chr19 53493619 53496797 + 0 NA intron (NR_003578, intron 1 of 3) AluJb|SINE|Alu 1576 NR_003578 79986 Hs.714428 NM_024924 ENSG00000242779 ZNF702P ZNF702 zinc finger protein 702, pseudogene pseudo 0.078 2.409 0.255 0.877 0.310 2.669 3.816 13.367 0.175 0.026 0.087 0.213 5.942 0.593 0.024 0.039 0.939 0.052 0.456 2.525 1624 chrX 24163032 24171851 + 0 NA promoter-TSS (NM_003410) promoter-TSS (NM_003410) -321 NM_001178086 7543 Hs.336681 NM_003410 ENSG00000005889 ZFX ZNF926 zinc finger protein, X-linked protein-coding 1.577 0.730 3.820 3.776 4.945 1.701 3.687 0.383 1.384 5.442 0.353 2.128 3.491 4.224 0.916 0.813 0.646 2.013 1.070 1.193 2.267 0.717 1571 chr9 99178780 99184765 + 0 NA Intergenic L2a|LINE|L2 -1103 NM_153695 195828 Hs.494557 NM_153695 ENSG00000165244 ZNF367 AFF29|CDC14B|ZFF29 zinc finger protein 367 protein-coding 2.431 1.918 4.752 1.899 4.509 2.774 4.581 2.077 9.701 2.465 1.258 2.948 5.523 3.139 1.781 2.649 1.404 6.554 4.826 4.129 1.724 3.068 422 chr14 50358221 50383013 + 0 NA Intergenic AluSx3|SINE|Alu 10881 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 2.181 0.450 4.627 0.621 12.386 0.992 2.414 0.491 2.003 2.678 0.467 4.679 5.061 0.527 1.375 0.308 0.319 2.030 1.308 0.772 0.440 1.623 1219 chr5 40833002 40842855 + 0 NA Intergenic Intergenic -2541 NM_000997 6167 Hs.447582 NM_000997 ENSG00000145592 RPL37 L37 ribosomal protein L37 protein-coding 3.403 0.603 2.654 1.662 4.859 1.178 2.630 0.909 5.309 3.786 1.011 6.026 5.289 1.215 1.868 1.030 1.035 2.299 1.116 1.178 1.108 1.558 905 chr2 199623468 199640599 + 0 NA Intergenic L2c|LINE|L2 -392212 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 0.193 0.133 7.838 0.200 0.083 0.108 0.052 0.099 0.014 0.045 0.312 0.106 0.104 0.391 1.074 0.044 0.002 0.039 8.926 0.116 1552 chr9 16242160 16254054 + 0 NA intron (NR_073471, intron 1 of 3) intron (NR_073471, intron 1 of 3) 4998 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 0.162 0.115 0.082 0.275 0.115 0.039 0.031 1.094 5.294 0.109 0.013 0.111 0.082 0.159 0.076 0.072 0.138 0.993 0.004 0.308 0.630 0.031 1194 chr4 146855921 146860666 + 0 NA intron (NM_001306215, intron 1 of 14) CpG 1819 NM_001306215 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 5.923 1.675 2.922 6.347 9.595 0.992 3.659 0.858 5.004 2.684 1.379 5.324 4.991 2.123 1.514 4.442 3.575 3.090 2.831 2.662 6.111 1.682 97 chr1 156709533 156723576 + 0 NA intron (NR_135008, intron 1 of 6) intron (NR_135008, intron 1 of 6) 4531 NM_001319188 3068 Hs.743948 NM_004494 ENSG00000143321 HDGF HMG1L2 hepatoma-derived growth factor protein-coding 5.514 2.068 2.309 4.272 6.630 2.632 4.545 1.557 6.226 4.510 1.481 8.791 9.776 3.591 3.688 1.816 1.602 5.813 2.250 3.617 2.598 3.923 41 chr1 37936430 37953625 + 0 NA promoter-TSS (NR_106790) promoter-TSS (NR_106790) -804 NR_106790 102465438 NR_106790 ENSG00000163874 MIR6732 hsa-mir-6732 microRNA 6732 ncRNA 1.636 1.563 1.418 0.367 3.501 1.100 2.606 0.779 1.647 2.462 0.689 4.390 5.033 4.006 1.324 0.237 0.242 2.137 2.518 2.982 0.506 1.839 668 chr17 48225816 48231374 + 0 NA promoter-TSS (NM_032595) promoter-TSS (NM_032595) -717 NM_032595 84687 Hs.514323 NM_032595 ENSG00000108819 PPP1R9B PPP1R6|PPP1R9|SPINO|Spn protein phosphatase 1 regulatory subunit 9B protein-coding 2.973 1.292 2.521 1.518 2.692 2.494 5.971 1.438 5.782 2.571 1.429 8.569 7.820 2.848 2.345 1.689 1.393 2.403 0.399 1.561 0.496 1.553 52 chr1 56180526 56201769 + 0 NA Intergenic Intergenic 499833 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 0.452 0.147 0.098 0.050 0.144 0.150 1.802 1.502 5.887 0.193 0.008 0.244 0.130 0.398 0.750 0.036 0.057 4.974 0.014 0.317 0.016 0.660 688 chr17 60220600 60249254 + 0 NA Intergenic AluSx|SINE|Alu -92284 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 0.316 0.090 1.007 4.920 0.337 0.286 0.261 0.017 0.050 0.310 0.168 0.275 1.506 0.255 0.095 0.711 1.100 0.057 0.037 0.250 4.621 0.302 750 chr19 13161511 13167664 + 0 NA intron (NM_001271043, intron 2 of 10) intron (NM_001271043, intron 2 of 10) 29192 NM_001271043 4784 Hs.257970 NM_002501 ENSG00000008441 NFIX CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2 nuclear factor I X protein-coding 0.138 2.374 0.460 0.873 0.245 0.172 1.086 1.647 4.141 0.316 0.277 0.138 0.180 0.560 0.151 0.178 0.212 12.820 4.545 6.029 0.217 1.645 1451 chr7 114053329 114064298 + 0 NA intron (NM_148898, intron 1 of 17) intron (NM_148898, intron 1 of 17) 3761 NM_014491 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 1.089 0.023 0.533 0.097 7.098 0.035 0.087 0.113 0.714 0.480 0.774 0.285 0.088 0.198 0.100 0.199 0.043 0.008 0.061 0.137 0.087 302 chr12 2985174 2987648 + 0 NA promoter-TSS (NM_001252499) promoter-TSS (NM_001252499) 46 NM_001252500 83695 Hs.198853 NM_001252499 ENSG00000171792 RHNO1 C12orf32|HKMT1188|RHINO RAD9-HUS1-RAD1 interacting nuclear orphan 1 protein-coding 6.237 3.511 3.489 5.823 9.770 5.502 11.155 1.268 4.785 10.688 2.985 8.490 16.038 7.030 6.660 4.110 3.413 10.063 6.522 5.876 4.634 4.051 1126 chr3 177061178 177084192 + 0 NA Intergenic L2a|LINE|L2 60455 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 1.389 0.361 1.881 1.159 3.398 0.786 2.229 1.588 4.734 2.039 1.466 2.971 7.707 0.555 0.617 0.463 0.726 2.444 1.539 0.850 1.801 3.203 774 chr19 38779192 38798358 + 0 NA Intergenic HERVL40-int|LTR|ERVL -6026 NM_001317801 64073 Hs.631544 NM_022125 ENSG00000167644 C19orf33 H2RSP|IMUP|IMUP-1|IMUP-2 chromosome 19 open reading frame 33 protein-coding 3.535 0.653 10.686 0.153 1.769 0.586 2.662 0.240 0.233 1.500 0.594 1.987 0.712 0.731 1.304 0.081 0.103 2.600 2.125 1.271 0.091 1.597 1453 chr7 139310263 139355289 + 0 NA intron (NM_001113239, intron 2 of 14) L2b|LINE|L2 124102 NM_001080511 154790 Hs.57806 NM_001080511 ENSG00000236279 CLEC2L - C-type lectin domain family 2 member L protein-coding 0.531 0.022 0.198 4.859 0.321 0.089 0.695 0.065 0.187 0.382 0.073 0.184 0.380 0.174 0.224 1.100 1.408 0.295 0.060 0.072 5.103 0.100 866 chr2 101739233 101743999 + 0 NA intron (NR_138475, intron 1 of 18) intron (NR_138475, intron 1 of 18) 26293 NM_001102426 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 1.920 0.338 2.813 0.247 1.938 1.167 2.312 0.199 0.660 0.828 0.785 2.918 0.982 0.526 2.885 0.213 0.178 5.522 3.530 0.886 0.049 0.673 910 chr2 206948565 206952287 + 0 NA intron (NM_017759, intron 1 of 10) CpG 480 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 4.740 1.098 6.496 8.322 10.690 4.714 8.324 1.102 6.849 5.279 1.851 7.223 13.114 5.850 4.254 4.832 3.772 4.167 2.240 1.788 5.202 4.142 1341 chr6 45663586 45687540 + 0 NA Intergenic L2a|LINE|L2 229771 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 0.201 0.336 0.180 0.067 0.204 0.095 0.871 2.069 2.948 0.155 0.188 0.628 0.287 0.424 0.854 0.121 0.191 0.991 0.079 0.761 0.098 0.437 693 chr17 69398192 69404818 + 0 NA Intergenic Intergenic -203185 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 0.581 0.617 0.595 0.098 0.320 0.012 0.056 0.141 0.263 0.361 0.049 0.386 0.185 0.117 0.344 0.059 0.019 0.061 2.202 1.478 0.035 3.713 593 chr17 7460909 7466332 + 0 NA intron (NM_172089, intron 9 of 10) intron (NM_172089, intron 9 of 10) -1689 NM_015670 26168 Hs.513926 NM_015670 ENSG00000161956 SENP3 SMT3IP1|SSP3|Ulp1 SUMO1/sentrin/SMT3 specific peptidase 3 protein-coding 2.345 0.890 1.636 1.222 3.721 1.288 2.150 1.055 2.901 2.362 1.031 4.804 1.960 1.662 4.277 1.072 0.865 0.900 1.495 1.593 1.071 1.042 770 chr19 36543985 36546986 + 0 NA promoter-TSS (NM_001083961) promoter-TSS (NM_001083961) 179 NM_001331104 199745 Hs.350209 NM_152658 ENSG00000161277 THAP8 - THAP domain containing 8 protein-coding 4.738 1.851 7.803 4.383 4.684 3.744 7.540 1.430 7.191 3.717 1.835 3.572 7.628 2.608 2.713 1.173 0.984 3.004 2.865 3.023 2.707 1.506 188 chr10 75344931 75352078 + 0 NA intron (NM_001320441, intron 1 of 14) intron (NM_001320441, intron 1 of 14) 2604 NR_135249 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 0.950 2.356 1.378 0.374 0.655 0.516 1.433 0.275 1.492 0.450 0.160 1.552 0.662 0.401 0.930 0.065 0.287 0.991 1.444 6.410 0.392 1.384 402 chr14 21563047 21580182 + 0 NA 3' UTR (NM_001146683, exon 8 of 8) 3' UTR (NM_001146683, exon 8 of 8) 1249 NM_001102454 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding 1.140 0.556 0.735 0.874 5.587 0.640 1.876 0.425 1.261 1.835 0.564 3.060 2.404 0.458 0.540 0.523 0.416 0.649 0.542 0.727 0.673 0.393 1534 chr8 145128411 145138988 + 0 NA exon (NM_019037, exon 1 of 3) exon (NM_019037, exon 1 of 3) 177 NM_019037 54512 Hs.632041 NM_019037 ENSG00000178896 EXOSC4 RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A exosome component 4 protein-coding 1.626 0.468 0.968 3.437 7.458 1.310 9.332 0.914 3.483 3.294 1.148 4.292 4.425 1.366 1.541 1.647 1.224 0.795 1.228 0.613 1.348 0.713 1097 chr3 137483058 137487523 + 0 NA TTS (NM_004189) TTS (NM_004189) 2156 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box 14 protein-coding 0.193 0.032 0.137 3.055 0.234 0.052 0.103 0.016 0.105 0.076 0.228 0.161 0.077 0.070 4.383 3.340 0.015 0.026 1.858 0.085 641 chr17 40560549 40581709 + 0 NA intron (NM_012232, intron 1 of 1) AluJo|SINE|Alu 4209 NM_012232 284119 Hs.437191 NM_012232 ENSG00000177469 PTRF CAVIN|CAVIN1|CGL4|FKSG13|cavin-1 polymerase I and transcript release factor protein-coding 0.268 0.907 0.552 0.323 1.834 0.515 2.784 0.454 1.826 1.201 0.746 1.653 0.578 1.551 0.361 0.147 0.126 2.073 0.200 1.814 0.124 0.648 893 chr2 173104130 173128990 + 0 NA Intergenic Intergenic 148826 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-AS1 TCONS_00003049 DLX2 antisense RNA 1 (head to head) ncRNA 0.277 0.533 0.178 0.397 6.271 0.227 1.307 0.419 1.043 2.269 0.826 1.576 3.338 0.305 0.562 0.054 0.093 2.373 0.747 1.436 0.130 0.876 838 chr2 28608335 28626146 + 0 NA intron (NM_005253, intron 1 of 3) intron (NM_005253, intron 1 of 3) 299 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 1.696 1.571 2.792 1.051 4.311 3.597 10.103 1.568 5.941 4.287 2.366 4.688 6.518 4.016 2.626 1.350 0.980 3.685 3.531 2.855 0.547 1.718 616 chr17 27502805 27507454 + 0 NA intron (NM_001346765, intron 1 of 42) intron (NM_001346765, intron 1 of 42) -1359 NM_001346767 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 3.457 0.901 2.168 4.968 5.715 2.161 8.134 0.918 1.970 3.436 1.458 7.943 2.651 4.243 1.624 1.268 1.104 1.329 5.056 1.116 4.292 5.438 640 chr17 40475504 40482548 + 0 NA intron (NM_003150, intron 14 of 23) intron (NM_003150, intron 14 of 23) 38952 NM_001288720 6776 Hs.437058 NM_003152 ENSG00000126561 STAT5A MGF|STAT5 signal transducer and activator of transcription 5A protein-coding 0.332 1.522 2.507 1.260 0.588 0.226 5.543 0.556 1.947 1.291 0.271 1.584 0.243 1.594 0.427 0.087 0.120 5.822 1.631 4.195 2.025 4.131 1121 chr3 169946100 169953064 + 0 NA intron (NM_002740, intron 1 of 17) L1M5|LINE|L1 9362 NM_002740 5584 Hs.478199 NM_002740 ENSG00000163558 PRKCI DXS1179E|PKCI|nPKC-iota protein kinase C iota protein-coding 0.261 1.920 0.290 0.169 0.535 0.032 0.386 0.158 0.419 0.567 0.129 0.877 0.802 0.524 0.209 0.061 0.017 0.075 0.044 4.584 0.050 0.208 83 chr1 151253084 151256478 + 0 NA promoter-TSS (NR_135595) promoter-TSS (NR_135595) -7 NM_001304763 57592 Hs.186756 NM_020832 ENSG00000143373 ZNF687 PDB6 zinc finger protein 687 protein-coding 3.930 1.569 2.235 4.650 7.601 2.102 3.903 1.889 8.320 4.870 1.143 6.447 10.790 2.523 3.450 7.374 5.420 2.493 0.958 1.958 2.803 1.744 804 chr19 46269925 46275510 + 0 NA promoter-TSS (NM_175875) promoter-TSS (NM_175875) -220 NM_175875 147912 Hs.43314 NM_175875 ENSG00000177045 SIX5 BOR2|DMAHP SIX homeobox 5 protein-coding 2.524 1.397 2.937 2.609 2.734 2.498 3.629 1.232 4.440 2.326 0.753 2.609 7.285 4.002 3.238 1.267 1.125 1.250 0.821 1.671 1.033 1.185 870 chr2 113379091 113385119 + 0 NA Intergenic Intergenic 19652 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 0.368 2.280 1.548 0.256 1.404 0.519 4.155 0.689 1.244 1.146 0.401 2.664 0.921 1.160 1.834 0.076 0.121 3.524 5.270 6.575 0.019 1.696 1384 chr7 5566696 5579411 + 0 NA Intergenic AluJb|SINE|Alu -2821 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 1.855 0.921 2.166 1.707 3.525 1.473 5.963 1.006 2.608 2.999 0.925 4.151 2.811 2.171 1.268 1.246 0.784 2.106 1.320 1.257 1.264 1.420 896 chr2 178104583 178161874 + 0 NA Intergenic Intergenic -3369 NM_001313903 4780 Hs.744006 NM_006164 ENSG00000116044 NFE2L2 HEBP1|NRF2 nuclear factor, erythroid 2 like 2 protein-coding 1.065 0.494 1.285 0.841 2.728 0.843 1.669 0.272 1.311 2.069 3.063 1.556 8.828 0.731 0.777 0.532 0.410 0.764 0.342 1.151 0.551 0.561 1468 chr8 22921569 22933314 + 0 NA promoter-TSS (NR_027140) promoter-TSS (NR_027140) -741 NR_027140 8795 Hs.521456 NM_003842 ENSG00000120889 TNFRSF10B CD262|DR5|KILLER|KILLER/DR5|TRAIL-R2|TRAILR2|TRICK2|TRICK2A|TRICK2B|TRICKB|ZTNFR9 TNF receptor superfamily member 10b protein-coding 2.333 1.105 2.152 1.094 3.146 1.140 2.014 0.711 1.937 0.557 0.653 3.221 1.691 3.840 1.325 0.639 0.477 0.941 2.071 1.620 0.574 1.908 1385 chr7 5592610 5603776 + 0 NA Intergenic AluJr4|SINE|Alu -27961 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 2.307 1.264 2.320 1.733 2.885 1.763 3.520 0.867 1.867 2.557 1.139 5.096 3.924 3.437 0.835 1.160 0.988 2.482 2.317 1.688 1.555 0.992 1464 chr8 9315388 9345080 + 0 NA Intergenic AluSx1|SINE|Alu -83211 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 0.136 0.021 0.094 7.979 0.105 0.049 0.044 0.016 0.035 0.116 0.021 0.146 0.154 0.068 0.053 0.147 0.316 0.053 0.008 0.035 8.999 0.041 1494 chr8 73782367 73787750 + 0 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -136039 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 0.198 0.069 0.046 0.536 0.164 0.071 0.065 0.014 0.038 0.139 0.163 0.281 0.521 0.082 0.174 2.867 4.321 0.023 0.041 1.300 0.052 962 chr20 40270403 40275177 + 0 NA Intergenic Intergenic -25657 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 2.248 0.078 0.193 0.269 0.924 0.127 0.074 0.215 0.120 3.614 4.217 3.319 9.697 0.211 0.239 0.264 0.528 0.014 0.035 0.421 0.242 0.061 1085 chr3 71543975 71562050 + 0 NA intron (NM_001012505, intron 2 of 6) intron (NM_001012505, intron 2 of 6) 38228 NR_031697 100302112 NR_031697 ENSG00000221264 MIR1284 MIRN1284|hsa-mir-1284|mir-1284 microRNA 1284 ncRNA 0.183 0.713 0.216 0.053 0.566 0.135 0.809 1.444 4.222 0.311 0.096 0.586 1.079 1.110 0.376 0.047 0.094 0.544 0.056 1.662 0.048 0.126 755 chr19 16434604 16457661 + 0 NA Intergenic Intergenic 10495 NM_016270 10365 Hs.685136 NM_016270 ENSG00000127528 KLF2 LKLF Kruppel like factor 2 protein-coding 0.282 0.693 0.476 0.241 0.380 0.290 3.831 0.488 1.257 0.308 0.112 0.138 0.456 0.152 0.930 0.105 0.063 5.612 0.465 1.014 0.035 0.290 777 chr19 39108866 39111006 + 0 NA exon (NM_001300992, exon 1 of 7) exon (NM_001300992, exon 1 of 7) 222 NM_001300992 27335 Hs.314359 NM_013234 ENSG00000178982 EIF3K ARG134|EIF3-p28|EIF3S12|HSPC029|M9|MSTP001|PLAC-24|PLAC24|PRO1474|PTD001 eukaryotic translation initiation factor 3 subunit K protein-coding 5.625 0.752 13.355 5.145 6.385 2.277 6.894 0.703 4.223 4.274 2.181 4.555 9.223 1.830 2.618 1.346 1.409 0.970 1.320 1.872 2.089 0.917 143 chr1 234790827 234796772 + 0 NA intron (NR_125944, intron 3 of 3) intron (NR_125944, intron 3 of 3) 11764 NR_125944 101927787 Hs.520658 NR_125944 ENSG00000228044 LOC101927787 - uncharacterized LOC101927787 ncRNA 0.415 0.500 2.119 0.450 3.853 0.407 1.558 0.850 1.049 3.171 2.150 8.777 4.545 0.857 0.618 0.051 0.164 3.684 3.042 0.897 0.323 1.628 464 chr15 40626760 40637415 + 0 NA intron (NM_207380, intron 2 of 10) intron (NM_207380, intron 2 of 10) 1081 NM_207380 388115 Hs.32433 NM_207380 ENSG00000188549 C15orf52 - chromosome 15 open reading frame 52 protein-coding 0.273 0.930 1.034 0.191 0.968 0.639 4.013 1.886 6.272 0.982 1.128 4.089 1.108 1.875 1.680 0.205 0.108 7.170 5.426 1.681 0.085 2.496 1403 chr7 27202544 27229570 + 0 NA intron (NR_037939, intron 1 of 1) intron (NR_037939, intron 1 of 1) -2102 NM_018951 3206 Hs.110637 NM_018951 ENSG00000253293 HOXA10 HOX1|HOX1.8|HOX1H|PL homeobox A10 protein-coding 1.402 0.199 5.893 1.460 2.769 0.586 0.141 0.032 0.089 1.066 1.053 3.697 0.214 1.373 1.463 5.046 3.862 0.021 0.093 0.231 0.879 0.067 1051 chr22 50729686 50746189 + 0 NA intron (NM_012401, intron 1 of 36) CpG 8064 NM_012401 23654 Hs.3989 NM_012401 ENSG00000196576 PLXNB2 MM1|Nbla00445|PLEXB2|dJ402G11.3 plexin B2 protein-coding 6.427 1.396 2.491 0.389 2.822 0.874 4.056 0.658 1.679 1.481 0.670 7.272 2.874 2.581 1.939 0.265 0.205 2.747 0.003 2.172 0.154 1.236 6 chr1 6544660 6553514 + 0 NA intron (NM_198681, intron 2 of 21) intron (NM_198681, intron 2 of 21) 1553 NM_001042664 57449 Hs.284232 NM_020631 ENSG00000171680 PLEKHG5 CMTRIC|DSMA4|GEF720|Syx|Tech pleckstrin homology and RhoGEF domain containing G5 protein-coding 1.154 0.923 1.128 0.480 4.768 0.350 0.126 0.312 0.743 5.961 0.928 8.295 4.137 0.483 0.943 0.727 0.316 1.652 1.870 1.451 0.052 0.588 562 chr16 73078499 73105806 + 0 NA intron (NM_001164766, intron 1 of 8) CpG 382 NM_001164766 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 3.276 0.780 0.729 3.515 2.641 1.798 2.632 1.065 3.279 2.219 1.882 3.422 3.584 1.545 1.039 1.892 1.824 2.369 1.863 1.052 3.176 1.218 1497 chr8 74223304 74235946 + 0 NA intron (NR_125388, intron 4 of 5) intron (NR_125388, intron 4 of 5) 22788 NM_172037 157506 Hs.244940 NM_172037 ENSG00000121039 RDH10 SDR16C4 retinol dehydrogenase 10 protein-coding 1.677 0.235 0.167 0.296 0.541 0.054 0.167 0.018 0.128 0.228 0.222 1.906 6.647 0.111 0.215 0.097 0.083 0.048 0.030 0.374 0.155 0.293 1304 chr6 20400974 20405012 + 0 NA promoter-TSS (NM_001243076) promoter-TSS (NM_001243076) 856 NM_001949 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 5.793 1.832 6.059 4.367 8.327 3.739 7.371 1.800 9.951 7.630 2.424 5.067 10.531 2.259 2.791 4.465 2.612 4.155 4.915 2.631 4.937 4.073 1102 chr3 146185784 146189629 + 0 NA promoter-TSS (NM_001199978) promoter-TSS (NM_001199978) -618 NM_001199978 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 1.217 0.032 6.321 0.482 2.035 0.117 2.454 0.042 0.273 0.187 0.062 0.588 0.158 0.927 0.487 0.061 0.188 0.035 0.033 0.087 0.510 2.089 497 chr15 77710539 77714336 + 0 NA promoter-TSS (NM_001304505) promoter-TSS (NM_001304505) 9 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 1.736 2.803 1.886 4.700 5.784 1.935 3.199 1.079 4.673 4.259 1.389 3.674 3.386 2.382 1.288 2.122 1.630 1.637 0.784 4.244 3.197 0.476 183 chr10 65025136 65029346 + 0 NA intron (NM_032776, intron 2 of 25) intron (NM_032776, intron 2 of 25) 1742 NM_001318153 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 3.960 2.352 3.799 5.930 12.494 2.809 3.074 0.688 7.626 1.059 0.593 4.266 6.122 3.055 2.234 0.410 1.013 2.156 2.789 5.660 4.417 4.416 518 chr16 120663 136772 + 0 NA intron (NM_001015052, intron 1 of 3) intron (NM_001015052, intron 1 of 3) 548 NM_001015052 4350 Hs.459596 NM_002434 ENSG00000103152 MPG AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg N-methylpurine DNA glycosylase protein-coding 1.181 0.926 3.043 0.418 2.008 0.614 5.139 0.508 1.089 1.524 0.486 2.986 1.557 1.231 0.845 0.483 0.436 1.646 0.722 1.381 0.143 0.809 1478 chr8 42146720 42152241 + 0 NA intron (NM_001556, intron 4 of 21) intron (NM_001556, intron 4 of 21) 20660 NR_033818 3551 Hs.597664 NM_001556 ENSG00000104365 IKBKB IKK-beta|IKK2|IKKB|IMD15|NFKBIKB inhibitor of nuclear factor kappa B kinase subunit beta protein-coding 0.264 2.017 6.252 0.101 5.379 0.084 3.913 0.216 0.389 0.689 2.662 2.705 4.108 0.176 0.301 0.059 0.110 6.017 0.015 4.817 0.071 0.104 1211 chr5 10549288 10565628 + 0 NA Intergenic Intergenic -6977 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 0.515 1.092 1.245 0.052 2.033 0.981 5.367 3.052 7.255 1.313 1.229 2.606 0.480 1.930 0.757 0.526 0.425 6.899 0.337 1.878 0.078 1.051 439 chr14 69041095 69047566 + 0 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 51174 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 0.402 1.497 0.272 0.120 1.130 0.799 2.511 2.340 4.541 0.577 0.521 1.015 0.758 0.625 0.948 0.007 0.093 5.881 0.129 3.253 0.141 1.244 362 chr12 96587576 96593818 + 0 NA intron (NM_005230, intron 1 of 4) intron (NM_005230, intron 1 of 4) 2537 NM_005230 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ELK3, ETS transcription factor protein-coding 0.494 2.043 1.098 0.360 5.982 3.434 2.936 0.701 3.743 2.083 0.713 3.387 2.822 1.752 1.788 0.938 0.811 6.394 7.270 4.140 0.074 3.629 1379 chr7 1594013 1601027 + 0 NA Intergenic Intergenic -1454 NM_001097620 202915 Hs.592174 NM_152689 ENSG00000164855 TMEM184A SDMG1 transmembrane protein 184A protein-coding 2.943 0.812 2.417 0.549 1.219 0.401 1.987 0.480 0.723 2.359 1.415 10.445 3.469 1.535 1.186 0.389 0.297 1.363 1.534 1.239 0.366 1.370 411 chr14 36962581 36994954 + 0 NA intron (NR_138596, intron 1 of 4) intron (NR_138596, intron 1 of 4) 4223 NR_138598 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 1.710 0.019 0.124 0.152 0.789 0.061 7.506 0.022 0.070 0.391 0.068 0.383 0.210 0.072 2.783 0.244 0.211 6.113 0.014 0.041 0.075 4.851 169 chr10 21782934 21786219 + 0 NA TTS (NR_031736) TTS (NR_031736) 994 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 1.011 2.374 1.497 1.962 7.817 5.552 1.017 3.031 10.692 3.010 0.442 4.888 3.682 2.279 0.568 2.065 0.997 1.674 0.759 3.243 0.870 0.534 1593 chr9 126893277 126897239 + 0 NA Intergenic Intergenic 121369 NM_004789 9355 Hs.696425 NM_004789 ENSG00000106689 LHX2 LH2|hLhx2 LIM homeobox 2 protein-coding 0.108 2.500 0.140 0.108 0.060 0.063 0.253 0.517 0.450 0.277 0.062 0.076 0.261 0.764 0.026 0.064 0.092 0.103 6.275 0.063 1542 chr8 146010644 146027316 + 0 NA Intergenic Intergenic -1149 NM_000973 6132 Hs.178551 NM_000973 ENSG00000161016 RPL8 L8 ribosomal protein L8 protein-coding 1.613 0.691 1.072 1.943 6.306 1.457 17.537 1.111 3.903 3.497 0.934 4.806 3.316 1.495 1.658 1.320 1.083 0.927 0.408 0.816 0.608 0.641 705 chr17 76973588 76976860 + 0 NA intron (NM_005567, intron 1 of 5) intron (NM_005567, intron 1 of 5) 837 NM_005567 3959 Hs.514535 NM_005567 ENSG00000108679 LGALS3BP 90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90 galectin 3 binding protein protein-coding 0.759 1.103 9.258 5.529 3.397 1.690 4.221 0.588 3.504 0.519 0.914 5.992 10.156 6.220 2.701 0.645 0.538 1.347 1.150 1.632 2.479 2.229 478 chr15 67170240 67181411 + 0 NA Intergenic Intergenic 73028 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LOC102723481 - uncharacterized LOC102723481 ncRNA 0.323 1.818 1.147 0.163 0.743 0.703 1.069 2.104 6.392 0.292 0.391 0.355 0.276 0.283 0.252 0.078 0.044 5.878 0.974 3.863 0.103 0.634 398 chr13 111356285 111370376 + 0 NA Intergenic Intergenic -1640 NM_198217 3621 Hs.46700 NM_005537 ENSG00000153487 ING1 p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a inhibitor of growth family member 1 protein-coding 3.374 0.964 1.772 2.030 3.671 1.001 2.576 1.047 5.894 2.575 0.763 4.472 3.111 2.550 1.729 1.332 0.922 1.698 0.915 1.358 1.190 0.792 384 chr13 45761205 45783910 + 0 NA intron (NM_198404, intron 1 of 1) intron (NM_198404, intron 1 of 1) 2618 NM_198404 386618 Hs.23406 NM_198404 ENSG00000180332 KCTD4 bA321C24.3 potassium channel tetramerization domain containing 4 protein-coding 0.273 1.205 0.257 0.104 0.937 0.030 1.932 0.825 3.341 0.698 0.642 1.340 1.270 0.378 0.432 0.041 0.102 0.769 0.801 3.492 0.076 0.909 836 chr2 28577568 28593959 + 0 NA Intergenic Intergenic -30016 NM_005253 2355 Hs.220971 NM_005253 ENSG00000075426 FOSL2 FRA2 FOS like 2, AP-1 transcription factor subunit protein-coding 0.264 0.091 0.205 0.196 0.756 1.693 6.698 0.429 0.465 0.414 0.438 0.559 1.029 0.538 0.447 0.125 0.103 0.281 0.227 0.109 0.044 0.167 942 chr20 22773727 22778984 + 0 NA Intergenic Intergenic -188200 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LINC01384 - long intergenic non-protein coding RNA 1384 ncRNA 0.287 0.702 0.139 0.041 0.150 1.395 1.643 2.256 3.899 0.557 0.474 0.358 0.188 0.907 0.496 0.015 0.134 2.450 0.273 1.630 0.023 0.519 955 chr20 34327812 34332546 + 0 NA promoter-TSS (NM_001242599) promoter-TSS (NM_001242599) 79 NM_001323422 9584 Hs.282901 NM_004902 ENSG00000131051 RBM39 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 RNA binding motif protein 39 protein-coding 6.940 2.150 6.372 9.182 12.747 5.572 8.095 2.196 11.573 8.317 3.515 14.102 12.215 7.785 4.688 1.750 2.143 5.961 3.738 3.906 6.220 4.128 1376 chr6 161824726 161846772 + 0 NA intron (NM_013987, intron 8 of 10) intron (NM_013987, intron 8 of 10) -56260 NR_134593 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 0.213 0.124 0.084 0.199 0.284 0.101 0.177 0.777 2.709 0.254 0.084 0.800 0.191 0.625 0.156 0.038 0.071 0.095 0.034 0.321 0.086 0.171 407 chr14 34950256 34968678 + 0 NA Intergenic AluY|SINE|Alu -27999 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 0.393 0.101 0.285 0.093 1.390 0.823 0.364 0.185 0.365 0.580 0.216 0.665 5.056 0.140 0.197 0.060 0.046 0.169 0.500 0.121 0.031 0.110 18 chr1 16141491 16163525 + 0 NA Intergenic L2a|LINE|L2 -18314 NM_001089591 440567 Hs.568229 NM_001089591 ENSG00000233954 UQCRHL - ubiquinol-cytochrome c reductase hinge protein like protein-coding 1.087 0.433 1.061 2.971 2.631 0.791 1.996 0.586 2.821 3.428 0.783 1.865 4.451 1.295 0.827 0.750 0.612 1.908 1.144 0.854 1.868 1.049 376 chr12 124868806 124878601 + 0 NA intron (NM_001077261, intron 18 of 47) CpG -51915 NR_106940 102466204 NR_106940 ENSG00000275967 MIR6880 hsa-mir-6880 microRNA 6880 ncRNA 0.796 2.254 0.698 0.175 0.702 0.510 3.263 0.591 1.256 0.196 0.024 0.555 0.238 2.817 1.741 0.215 0.211 4.277 0.213 3.584 0.035 2.556 912 chr2 208113759 208125666 + 0 NA promoter-TSS (NR_110283) promoter-TSS (NR_110283) -672 NR_110283 101927865 Hs.574609 NR_110283 LOC101927865 - uncharacterized LOC101927865 ncRNA 0.856 0.766 0.220 0.260 0.207 0.083 1.414 2.341 9.592 0.705 0.225 0.433 0.826 1.066 0.454 0.086 0.129 1.626 0.057 2.055 0.065 0.143 1432 chr7 76576505 76597308 + 0 NA Intergenic AluSx|SINE|Alu -23233 NR_023383 441263 Hs.675888 NR_023383 ENSG00000265479 DTX2P1-UPK3BP1-PMS2P11 PMS2L11 DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene pseudo 0.880 0.648 0.637 0.236 1.451 0.762 2.159 1.239 4.134 1.072 0.582 2.488 2.578 1.842 0.923 0.475 0.539 2.960 0.393 1.399 0.132 1.492 785 chr19 39921049 39937723 + 0 NA Intergenic AluSx|SINE|Alu -2726 NM_001321111 6217 Hs.397609 NM_001020 ENSG00000105193 RPS16 S16 ribosomal protein S16 protein-coding 2.730 0.649 6.720 1.809 1.969 1.634 3.240 0.486 1.933 2.156 0.981 2.636 4.986 1.273 1.358 0.531 0.425 0.907 0.634 0.971 0.937 0.948 599 chr17 8020760 8030422 + 0 NA intron (NM_001165967, intron 3 of 3) CpG 1819 NM_032580 84667 Hs.434828 NM_032580 ENSG00000179111 HES7 SCDO4|bHLHb37 hes family bHLH transcription factor 7 protein-coding 1.412 0.907 1.139 0.933 2.150 0.586 1.087 0.627 1.441 0.971 0.662 1.282 1.335 4.638 0.965 0.658 0.553 0.430 0.962 1.247 0.083 0.420 1393 chr7 19058475 19071240 + 0 NA Intergenic AluY|SINE|Alu 92438 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 0.201 0.369 0.140 0.109 0.107 0.048 0.146 0.928 5.355 0.226 0.018 0.239 0.087 0.330 0.080 0.025 0.028 0.197 0.056 0.786 0.046 0.230 1167 chr4 26221588 26225885 + 0 NA Intergenic Intergenic -97596 NM_203283 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 0.288 0.317 0.068 0.498 0.111 0.304 1.615 0.973 8.722 0.107 0.020 0.198 0.114 0.292 1.601 0.401 0.511 4.887 0.068 0.751 0.161 5.089 587 chr17 4847720 4854984 + 0 NA intron (NM_005022, intron 1 of 2) CpG 1029 NM_005022 5216 Hs.494691 NM_005022 ENSG00000108518 PFN1 ALS18 profilin 1 protein-coding 3.619 2.668 4.778 3.511 7.820 3.553 4.860 1.698 5.745 4.658 1.796 6.274 10.108 3.670 2.295 2.966 2.123 4.446 3.394 4.469 3.312 1.974 609 chr17 21001413 21004436 + 0 NA Intergenic Intergenic 24055 NR_110896 101060544 Hs.585812 NR_110895 ENSG00000236819 LINC01563 HP08942 long intergenic non-protein coding RNA 1563 ncRNA 0.763 0.082 0.679 1.733 24.056 0.371 1.043 0.107 0.524 1.355 0.528 1.488 6.541 0.205 1.065 0.900 0.925 0.135 0.753 0.184 1.201 0.253 1595 chr9 127456737 127461764 + 0 NA intron (NR_038975, intron 1 of 1) intron (NR_038975, intron 1 of 1) 3261 NR_029782 406956 NR_029782 ENSG00000207737 MIR181B2 MIRN181B2|mir-181b-2 microRNA 181b-2 ncRNA 0.293 2.259 0.113 0.128 0.595 0.046 1.797 1.285 2.841 1.390 0.096 0.957 0.159 0.460 0.021 0.015 0.073 4.475 0.033 6.127 0.070 3.460 1235 chr5 110841509 110849954 + 0 NA intron (NR_131754, intron 1 of 4) intron (NR_131754, intron 1 of 4) -2193 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 1.135 0.909 1.035 1.806 3.210 4.075 0.437 0.260 2.065 0.303 0.645 0.903 0.674 1.468 0.378 0.663 0.429 0.915 1.438 1.250 1.075 1.421 190 chr10 85927180 85941165 + 0 NA intron (NM_207373, intron 1 of 2) intron (NM_207373, intron 1 of 2) 618 NM_207373 387695 Hs.298713 NM_207373 ENSG00000188373 C10orf99 AP-57|CSBF|UNQ1833 chromosome 10 open reading frame 99 protein-coding 0.121 0.009 0.129 0.071 0.508 0.066 0.060 0.017 0.044 0.775 0.889 4.399 2.699 0.133 0.015 0.052 0.043 0.029 0.012 0.063 0.025 0.080 298 chr11 129181305 129195626 + 0 NA Intergenic FAM|SINE|Alu -57416 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 1.535 0.017 0.122 8.296 0.228 0.091 0.058 0.033 0.077 0.521 0.458 1.807 0.310 0.108 0.306 1.327 1.629 0.014 0.055 0.031 5.982 0.345 95 chr1 155945544 155954364 + 0 NA Intergenic Intergenic -1618 NM_001162384 9181 Hs.743352 NM_004723 ENSG00000116584 ARHGEF2 GEF|GEF-H1|GEFH1|LFP40|P40 Rho/Rac guanine nucleotide exchange factor 2 protein-coding 2.139 2.555 0.652 1.913 2.994 0.995 3.752 1.178 2.473 1.529 0.885 3.714 3.402 2.596 3.220 1.301 0.893 5.063 1.194 5.132 1.213 1.711 923 chr2 234462896 234475744 + 0 NA intron (NM_018218, intron 2 of 30) intron (NM_018218, intron 2 of 30) 4916 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 1.740 0.495 1.714 1.025 1.964 0.663 1.352 0.468 0.817 1.364 0.791 2.798 6.127 0.939 1.052 0.466 0.531 0.447 0.219 1.078 0.709 0.576 601 chr17 15541721 15564056 + 0 NA intron (NM_006470, intron 4 of 8) AluSc8|SINE|Alu -29870 NM_001282540 374286 Hs.548021 NM_006382 ENSG00000241322 CDRT1 C170RF1|C17ORF1|C17ORF1A|FBXW10B|FBXW10P1|HREP|SM25H2 CMT1A duplicated region transcript 1 protein-coding 3.538 0.865 0.947 1.646 4.048 2.977 1.082 1.438 2.970 3.587 1.713 2.616 5.354 2.669 0.672 1.228 1.760 0.623 2.747 1.990 2.087 1.679 822 chr19 55983043 55989286 + 0 NA Intergenic AluJb|SINE|Alu -1535 NM_033113 89887 Hs.525209 NM_033113 ENSG00000197483 ZNF628 ZEC|Zfp628 zinc finger protein 628 protein-coding 2.534 4.502 0.923 1.197 2.413 3.074 1.445 2.344 8.531 1.639 0.327 1.709 2.874 1.148 0.765 0.618 0.369 1.046 0.686 10.123 0.606 0.587 231 chr11 34670591 34678081 + 0 NA intron (NM_012153, intron 6 of 8) intron (NM_012153, intron 6 of 8) 20325 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 2.020 0.430 3.271 0.746 0.480 2.339 2.956 1.027 2.240 0.550 7.112 1.952 1.550 0.234 0.610 0.021 0.144 2.775 2.337 0.817 0.397 0.516 243 chr11 57089069 57094030 + 0 NA intron (NM_033396, intron 1 of 11) intron (NM_033396, intron 1 of 11) 864 NM_033396 85456 Hs.530730 NM_033396 ENSG00000149115 TNKS1BP1 TAB182 tankyrase 1 binding protein 1 protein-coding 3.644 2.221 3.023 4.570 5.410 1.038 5.054 1.244 3.690 3.153 1.406 6.485 3.917 3.355 2.931 1.339 1.596 2.662 2.811 3.423 1.997 1.334 1610 chr9 137242059 137283011 + 0 NA intron (NM_002957, intron 1 of 9) intron (NM_002957, intron 1 of 9) -8606 NM_001291920 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 0.200 0.602 1.799 0.099 5.223 0.759 0.847 0.125 0.230 2.094 1.367 3.758 3.222 0.227 0.376 0.080 0.128 0.972 0.112 0.804 0.031 0.081 779 chr19 39281659 39299400 + 0 NA Intergenic Intergenic 10679 NM_001042507 653499 Hs.558355 NM_001042507 ENSG00000178934 LGALS7B GAL7|Gal-7|HKL-14|LGALS7|PI7 galectin 7B protein-coding 2.550 0.070 0.996 0.392 1.968 0.086 1.035 0.128 0.117 1.195 0.968 1.507 2.937 0.154 0.888 0.066 0.089 0.046 0.068 0.132 0.077 0.758 551 chr16 52519432 52534472 + 0 NA intron (NM_001080430, intron 1 of 6) intron (NM_001080430, intron 1 of 6) 53854 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 0.490 0.016 1.041 3.708 0.196 0.040 0.062 0.042 0.148 0.026 0.107 0.218 0.060 0.152 0.083 0.129 0.009 0.006 0.044 3.101 0.056 148 chr1 244995671 245003280 + 0 NA intron (NR_132419, intron 1 of 2) intron (NR_132419, intron 1 of 2) 697 NM_001312873 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A COX20, cytochrome c oxidase assembly factor protein-coding 4.238 1.383 2.461 7.326 10.553 3.563 4.556 1.220 7.135 5.010 1.163 5.298 9.761 2.497 3.401 2.877 2.562 3.906 2.217 2.971 6.482 2.881 504 chr15 80870970 80891769 + 0 NA intron (NM_014862, intron 17 of 18) intron (NM_014862, intron 17 of 18) 7925 NR_049837 100847042 NR_049837 ENSG00000172379 MIR5572 - microRNA 5572 ncRNA 0.260 0.649 0.190 0.154 2.137 0.316 0.967 0.120 0.126 1.260 1.302 4.989 1.050 0.164 0.635 0.022 0.067 0.766 0.169 1.403 0.077 0.611 343 chr12 54686687 54701724 + 0 NA intron (NM_001261461, intron 1 of 3) intron (NM_001261461, intron 1 of 3) 616 NM_001136023 4778 Hs.75643 NM_006163 ENSG00000123405 NFE2 NF-E2|p45 nuclear factor, erythroid 2 protein-coding 0.275 0.173 0.158 7.206 0.417 0.191 0.068 0.211 0.325 0.280 0.129 0.243 0.286 0.341 0.123 0.559 0.589 0.050 0.039 0.332 3.466 0.076 753 chr19 13949044 13977148 + 0 NA Intergenic AluJr|SINE|Alu -15623 NR_029495 407010 NR_029495 ENSG00000207980 MIR23A MIRN23A|hsa-mir-23a|miRNA23A|mir-23a microRNA 23a ncRNA 2.240 1.497 5.049 1.369 7.108 1.725 6.768 1.505 5.645 4.372 3.030 4.500 7.539 3.435 1.540 0.500 0.462 9.132 3.169 2.950 0.910 1.940 1343 chr6 47272934 47279076 + 0 NA intron (NM_014452, intron 1 of 5) intron (NM_014452, intron 1 of 5) 1678 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 0.944 0.383 2.783 0.853 0.924 1.280 1.602 0.588 1.212 1.037 0.750 4.928 2.723 0.794 1.286 0.612 0.630 0.503 1.374 0.612 0.505 4.428 697 chr17 73073153 73076702 + 0 NA Intergenic Intergenic -8895 NM_001271765 9121 Hs.592095 NM_004695 ENSG00000170190 SLC16A5 MCT5|MCT6 solute carrier family 16 member 5 protein-coding 0.979 1.605 2.923 0.120 1.357 0.818 1.293 1.685 3.740 0.383 0.179 0.603 0.847 1.200 0.411 0.204 0.148 4.602 0.628 2.982 0.128 6.039 981 chr20 51994419 52032237 + 0 NA intron (NM_001193421, intron 2 of 2) AluJb|SINE|Alu -155981 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 0.217 0.020 0.141 6.892 0.188 0.092 0.096 0.029 0.069 0.214 0.053 0.178 0.205 0.087 0.088 0.200 0.333 0.020 0.016 0.035 5.841 0.045 726 chr18 47331875 47341097 + 0 NA intron (NM_006111, intron 1 of 9) L1MEb|LINE|L1 3765 NM_006111 10449 Hs.200136 NM_006111 ENSG00000167315 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding 1.340 0.215 1.661 2.746 0.285 0.584 0.369 0.283 0.681 0.434 0.303 0.287 0.265 0.601 0.316 1.076 0.624 1.149 0.262 0.254 5.969 0.154 857 chr2 85874735 85891964 + 0 NA Intergenic MamGypLTR2c|LTR|Gypsy 12515 NM_000542 6439 Hs.512690 NM_000542 ENSG00000168878 SFTPB PSP-B|SFTB3|SFTP3|SMDP1|SP-B surfactant protein B protein-coding 0.156 0.173 0.188 0.254 0.174 0.097 4.407 0.032 0.058 0.460 0.056 0.175 0.156 0.361 0.331 0.136 0.183 2.153 0.010 0.329 0.100 0.316 106 chr1 164715420 164722551 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 24893 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 0.339 2.179 0.065 0.060 0.303 3.281 0.430 0.044 0.136 0.441 0.080 0.589 0.507 0.483 0.626 0.056 0.135 0.323 0.012 5.665 0.017 0.066 707 chr17 77019857 77024884 + 0 NA intron (NR_049769, intron 1 of 3) AluSq2|SINE|Alu 625 NR_049769 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and tumor necrosis factor related protein 1 protein-coding 0.855 0.867 7.207 0.326 0.743 0.147 1.344 0.607 0.369 0.406 0.763 1.175 0.403 1.183 0.603 1.044 0.975 0.634 0.108 1.051 0.553 0.280 1010 chr21 36517577 36524508 + 0 NA Intergenic Intergenic -99447 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 0.199 0.089 0.099 0.139 3.835 0.044 0.280 0.309 0.465 1.901 1.709 1.127 0.324 0.235 0.180 0.011 0.107 1.276 0.320 0.354 0.050 4.906 157 chr10 3565355 3585707 + 0 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) 214644 NR_131187 105376360 Hs.212226 NR_131187 LOC105376360 - uncharacterized LOC105376360 ncRNA 1.182 0.116 0.180 0.084 0.247 0.290 0.223 2.244 5.130 0.275 0.040 0.538 0.174 0.866 0.354 0.043 0.072 0.232 0.309 0.241 0.124 0.494 964 chr20 43356307 43364665 + 0 NA intron (NR_132377, intron 3 of 4) intron (NR_132377, intron 3 of 4) -14002 NM_022358 60598 Hs.528664 NM_022358 ENSG00000124249 KCNK15 K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1 potassium two pore domain channel subfamily K member 15 protein-coding 0.633 1.274 1.570 0.191 0.441 0.549 1.627 1.606 2.835 0.348 0.144 1.227 1.776 4.721 0.262 0.046 0.087 6.483 0.636 2.594 0.070 0.360 65 chr1 94200090 94206402 + 0 NA intron (NM_001261408, intron 2 of 13) MLT1C|LTR|ERVL-MaLR -55852 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 0.170 2.040 0.115 0.107 0.158 0.843 1.220 1.880 3.259 0.204 0.110 0.080 0.235 0.989 0.365 0.024 0.075 6.182 0.074 5.896 0.018 3.594 935 chr20 3183291 3191523 + 0 NA Intergenic AluY|SINE|Alu -2064 NM_023935 65992 Hs.471975 NM_023935 ENSG00000198171 DDRGK1 C20orf116|UFBP1|dJ1187M17.3 DDRGK domain containing 1 protein-coding 3.823 0.496 0.816 1.780 3.850 0.893 3.946 1.131 2.725 3.851 1.512 5.947 3.361 1.424 1.796 1.128 0.869 2.170 1.607 0.729 0.909 1.509 203 chr10 126123192 126130581 + 0 NA Intergenic L1MB5|LINE|L1 11664 NM_001146340 390010 Hs.712041 NM_001146340 ENSG00000229544 NKX1-2 C10orf121|NKX-1.1|bB238F13.2 NK1 homeobox 2 protein-coding 0.294 0.034 0.089 0.127 1.019 0.071 1.055 0.075 0.176 0.415 0.505 1.920 0.864 0.047 0.959 0.042 0.048 0.221 0.233 0.045 0.062 3.875 261 chr11 64122238 64127615 + 0 NA TTS (NM_032251) TTS (NM_032251) -1699 NM_001318361 8986 Hs.105584 NM_003942 ENSG00000162302 RPS6KA4 MSK2|RSK-B|S6K-alpha-4 ribosomal protein S6 kinase A4 protein-coding 2.380 1.566 1.520 1.551 2.613 0.986 3.699 1.072 2.190 2.606 1.224 8.896 3.192 2.285 1.997 0.864 0.812 3.885 4.865 1.799 0.750 1.564 1213 chr5 32442324 32445744 + 0 NA intron (NR_144318, intron 2 of 18) CpG 833 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 3.125 1.231 2.801 5.514 9.543 2.287 2.990 2.046 7.695 7.461 3.064 13.469 6.207 6.092 2.862 4.306 2.744 2.061 1.059 1.948 2.684 0.660 1093 chr3 122397773 122401686 + 0 NA promoter-TSS (NM_017554) promoter-TSS (NM_017554) 57 NM_017554 54625 Hs.518203 NM_017554 ENSG00000173193 PARP14 ARTD8|BAL2|PARP-14|pART8 poly(ADP-ribose) polymerase family member 14 protein-coding 2.290 1.456 6.662 1.148 5.686 1.247 4.780 0.709 3.519 0.586 0.566 5.928 5.031 3.076 2.737 0.844 0.738 2.432 2.131 0.954 1.334 4.994 81 chr1 151137190 151140173 + 0 NA promoter-TSS (NM_212551) promoter-TSS (NM_212551) 183 NM_024041 79005 Hs.732060 NM_024041 ENSG00000163156 SCNM1 - sodium channel modifier 1 protein-coding 2.356 1.368 0.923 3.342 5.172 1.824 1.830 0.802 3.574 3.619 0.715 3.867 8.235 1.826 2.335 4.246 6.061 1.841 0.312 1.289 1.391 0.708 1023 chr22 18109933 18129037 + 0 NA Intergenic AluSx1|SINE|Alu -1865 NM_001270735 23786 Hs.631672 NM_015367 ENSG00000099968 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2 like 13 protein-coding 2.603 0.424 1.515 1.027 4.935 1.591 3.243 0.603 2.360 5.317 1.684 2.489 6.480 1.643 0.855 0.346 0.336 0.841 0.987 0.762 0.607 0.993 321 chr12 14408340 14415512 + 0 NA Intergenic Intergenic -106640 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 0.398 1.105 2.111 2.818 3.987 1.244 5.380 1.295 8.193 4.422 1.778 0.827 4.299 2.947 0.722 1.011 1.429 4.205 0.064 2.639 1.405 2.080 1300 chr6 16749693 16771308 + 0 NA promoter-TSS (NR_136240) promoter-TSS (NR_136240) -869 NR_136240 101928433 Hs.408455 NR_136240 LOC101928433 - uncharacterized LOC101928433 ncRNA 1.655 0.596 2.420 0.910 1.357 1.126 1.774 0.904 2.978 0.854 0.312 0.716 3.593 1.338 0.697 0.427 0.331 2.945 1.791 1.198 0.415 1.330 1199 chr4 177756997 177764262 + 0 NA Intergenic MER21B|LTR|ERVL -46730 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|VRP vascular endothelial growth factor C protein-coding 0.177 0.742 0.149 5.663 0.031 3.134 1.474 2.428 0.524 0.078 0.737 0.094 0.310 0.243 0.034 0.665 0.063 1.758 0.094 3.574 86 chr1 154579358 154582324 + 0 NA promoter-TSS (NM_015841) promoter-TSS (NM_015841) -117 NM_001111 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA specific protein-coding 2.627 1.905 3.312 3.512 6.701 2.109 4.014 1.774 9.524 4.280 0.999 5.929 7.951 5.109 7.472 1.728 2.008 4.114 2.085 2.888 3.304 2.358 624 chr17 35832517 35856452 + 0 NA Intergenic AluSx1|SINE|Alu -5467 NM_007026 11072 Hs.91448 NM_007026 ENSG00000276023 DUSP14 MKP-L|MKP6 dual specificity phosphatase 14 protein-coding 0.961 0.709 0.681 2.513 2.183 0.623 1.327 0.187 0.999 1.998 1.053 1.714 2.942 0.442 0.534 0.528 0.542 1.821 0.629 1.479 1.111 7.032 792 chr19 42257096 42306920 + 0 NA Intergenic Intergenic -18514 NM_001277163 1084 Hs.11 NM_001815 ENSG00000170956 CEACAM3 CD66D|CEA|CGM1|W264|W282 carcinoembryonic antigen related cell adhesion molecule 3 protein-coding 5.273 0.017 0.278 0.230 0.162 0.079 0.386 0.040 0.104 0.239 0.024 0.372 0.128 0.088 0.577 0.638 0.985 0.022 0.626 0.048 0.714 0.057 1158 chr3 195904436 195924253 + 0 NA Intergenic Intergenic 23956 NM_001039617 131540 Hs.111591 NM_001039617 ENSG00000163958 ZDHHC19 DHHC19 zinc finger DHHC-type containing 19 protein-coding 0.226 0.094 0.168 0.699 0.786 0.036 0.253 0.051 0.121 0.950 0.621 0.625 nan 0.113 0.171 0.357 0.454 0.051 0.021 0.157 0.372 0.124 371 chr12 115092491 115125310 + 0 NA 3' UTR (NM_005996, exon 7 of 7) 3' UTR (NM_005996, exon 7 of 7) 13069 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 0.276 0.147 0.276 3.744 1.316 3.565 0.436 0.090 0.099 0.710 0.229 0.692 1.919 0.341 0.414 2.136 2.324 0.012 0.050 0.254 5.280 0.063 656 chr17 44437267 44451413 + 0 NA Intergenic Intergenic -5177 NM_016632 51326 Hs.559259 NM_016632 ENSG00000185829 ARL17A ARF1P2|ARL17P1 ADP ribosylation factor like GTPase 17A protein-coding 2.027 0.289 0.637 4.437 2.193 1.271 0.936 0.306 1.560 1.263 1.317 3.821 7.489 1.121 1.716 1.069 0.989 0.729 0.831 0.408 1.713 0.370 1248 chr5 134729095 134740053 + 0 NA intron (NM_004893, intron 1 of 8) CpG 354 NM_138610 9555 Hs.420272 NM_004893 ENSG00000113648 H2AFY H2A.y|H2A/y|H2AF12M|MACROH2A1.1|mH2A1|macroH2A1.2 H2A histone family member Y protein-coding 1.056 0.588 1.035 4.125 2.356 0.690 1.905 0.281 0.691 1.378 0.533 1.913 2.168 1.593 0.571 2.743 1.854 0.848 0.815 0.377 6.860 0.518 1079 chr3 69128087 69140399 + 0 NA exon (NM_006407, exon 1 of 3) exon (NM_006407, exon 1 of 3) 153 NM_006407 10550 Hs.518060 NM_006407 ENSG00000144746 ARL6IP5 DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx ADP ribosylation factor like GTPase 6 interacting protein 5 protein-coding 1.726 0.463 3.351 0.633 4.228 1.019 3.519 0.861 3.470 1.425 0.429 3.592 2.259 2.810 2.053 0.610 0.541 3.248 1.960 0.795 0.422 3.936 204 chr10 126835487 126851983 + 0 NA intron (NM_001290214, intron 1 of 10) intron (NM_001290214, intron 1 of 10) 3952 NM_001290215 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 2.060 0.458 2.321 2.878 3.533 2.685 2.238 0.486 1.963 1.317 0.759 7.021 2.244 2.334 2.393 2.378 1.467 1.148 0.886 0.634 2.178 3.007 1041 chr22 41839401 41844658 + 0 NA intron (NM_016272, intron 1 of 1) intron (NM_016272, intron 1 of 1) 998 NM_016272 10766 Hs.474978 NM_016272 ENSG00000183864 TOB2 APRO5|TOB4|TOBL|TROB2 transducer of ERBB2, 2 protein-coding 6.981 1.131 6.284 5.919 9.693 2.455 8.100 1.366 6.630 6.117 1.826 12.768 11.351 6.429 3.011 3.568 2.858 3.158 4.210 2.437 3.253 2.578 1590 chr9 123372516 123394001 + 0 NA intron (NM_001080497, intron 3 of 5) MER94B|DNA|hAT-Blackjack -40810 NR_073555 55755 Hs.269560 NM_018249 ENSG00000136861 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 0.234 0.051 0.131 0.239 0.401 0.159 0.293 0.050 0.229 0.567 0.447 0.264 7.066 0.101 0.078 0.069 0.140 0.095 0.060 0.116 0.102 0.048 435 chr14 68589192 68650938 + 0 NA intron (NM_001321809, intron 7 of 11) L1MEc|LINE|L1 329756 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 0.934 0.704 0.747 0.170 1.020 0.225 2.259 1.245 5.891 0.666 0.206 0.416 0.452 0.244 0.630 0.057 0.108 2.384 0.302 1.924 0.140 2.400 814 chr19 49652550 49669296 + 0 NA promoter-TSS (NM_001195227) promoter-TSS (NM_001195227) -75 NM_001321282 54795 Hs.467101 NM_017636 ENSG00000130529 TRPM4 LTrpC4|PFHB1B|TRPM4B|hTRPM4 transient receptor potential cation channel subfamily M member 4 protein-coding 2.468 0.163 0.552 0.400 1.029 0.513 0.483 0.419 1.015 1.217 0.305 1.847 1.276 1.355 0.536 0.331 0.320 0.065 0.425 0.192 0.261 0.153 1516 chr8 128045236 128052522 + 0 NA Intergenic Intergenic 23480 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA 34.089 0.170 0.534 3.419 6.692 0.296 0.137 0.021 0.181 2.812 0.772 3.130 9.860 0.390 0.386 0.689 0.965 0.293 0.376 2.726 0.039 1482 chr8 48647030 48651907 + 0 NA TTS (NM_005195) TTS (NM_005195) 1258 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 2.067 2.590 4.562 1.494 9.469 3.298 2.299 2.544 10.706 6.819 1.048 7.923 10.552 4.418 2.535 7.256 4.293 1.664 4.026 3.738 2.123 2.080 924 chr2 235263019 235281287 + 0 NA Intergenic Intergenic 133540 NM_005737 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 0.664 0.020 0.269 4.609 0.703 2.457 0.687 0.111 0.193 0.361 1.170 1.263 1.477 0.094 0.416 1.494 2.036 0.122 0.416 0.079 3.165 0.092 885 chr2 161224216 161239331 + 0 NA intron (NM_002897, intron 1 of 13) intron (NM_002897, intron 1 of 13) 32620 NR_039946 100616364 NR_039946 ENSG00000153250 MIR4785 mir-4785 microRNA 4785 ncRNA 0.390 2.007 0.165 0.085 0.749 0.170 0.677 0.161 0.319 0.268 0.038 0.234 0.316 0.920 0.145 0.052 0.159 0.336 0.050 5.619 0.069 0.144 1412 chr7 55084568 55098444 + 0 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) 4781 NM_201284 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 0.437 1.009 1.264 0.162 4.091 0.690 4.523 0.331 0.774 2.754 2.704 6.894 3.740 3.455 0.666 0.204 0.123 1.383 0.637 1.229 0.026 0.815 884 chr2 160468505 160474723 + 0 NA promoter-TSS (NR_110587) promoter-TSS (NR_110587) -191 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 2.532 1.255 2.068 1.548 11.548 2.813 4.361 0.791 3.471 2.148 1.155 3.811 7.110 0.044 2.039 1.915 2.247 1.298 0.485 3.257 1.773 1.962 339 chr12 53759549 53777509 + 0 NA Intergenic AluSz|SINE|Alu -5450 NM_138473 6667 Hs.620754 NM_003109 ENSG00000185591 SP1 - Sp1 transcription factor protein-coding 1.938 0.691 2.424 1.733 5.561 1.866 1.923 0.283 1.237 1.760 0.822 3.664 6.186 1.335 1.194 0.678 0.400 1.174 1.358 1.408 1.190 2.561 228 chr11 32451174 32459677 + 0 NA intron (NM_024426, intron 1 of 9) CpG -1639 NR_023920 51352 Hs.567499 NM_015855 ENSG00000183242 WT1-AS WIT-1|WIT1|WT1-AS1|WT1AS WT1 antisense RNA ncRNA 0.240 3.524 0.153 0.514 0.067 0.045 0.032 0.047 0.040 1.022 0.010 0.511 0.102 0.033 0.098 0.175 0.168 0.016 5.906 0.107 760 chr19 18470939 18501181 + 0 NA Intergenic AluSx|SINE|Alu -10710 NM_004864 9518 Hs.616962 NM_004864 ENSG00000130513 GDF15 GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB growth differentiation factor 15 protein-coding 2.269 0.834 3.566 0.569 1.426 0.332 3.624 0.843 1.232 0.716 1.145 2.032 5.495 0.736 0.542 0.081 0.104 0.652 1.658 1.457 0.229 0.588 863 chr2 101493153 101501238 + 0 NA intron (NM_002518, intron 1 of 20) L1MB5|LINE|L1 60582 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 0.277 0.118 0.275 1.387 0.289 2.507 0.455 0.049 0.110 0.312 0.039 0.732 0.244 0.111 0.761 0.890 1.303 0.200 0.702 0.221 0.491 0.660 749 chr19 12888326 12912964 + 0 NA Intergenic G-rich|Low_complexity|Low_complexity -1665 NM_002229 3726 Hs.25292 NM_002229 ENSG00000171223 JUNB AP-1 JunB proto-oncogene, AP-1 transcription factor subunit protein-coding 4.054 0.898 3.606 0.966 6.583 0.527 5.675 1.323 3.126 3.812 0.986 6.251 5.463 1.630 1.218 0.953 0.771 2.096 1.762 1.141 0.747 1.546 268 chr11 65339613 65345871 + 0 NA promoter-TSS (NM_001099409) promoter-TSS (NM_001099409) -767 NM_001099409 254102 Hs.502867 NM_001099409 ENSG00000173442 EHBP1L1 - EH domain binding protein 1 like 1 protein-coding 1.716 1.532 2.754 0.606 3.604 2.520 4.974 1.185 2.340 1.619 0.916 6.574 2.353 1.728 2.783 0.946 0.984 2.959 1.590 1.653 0.256 1.355 531 chr16 4338062 4368612 + 0 NA Intergenic AluSx3|SINE|Alu -11425 NM_001318918 84662 Hs.592087 NM_032575 ENSG00000126603 GLIS2 NKL|NPHP7 GLIS family zinc finger 2 protein-coding 0.827 0.627 1.580 0.546 1.553 0.966 3.575 0.490 1.331 0.510 0.416 1.869 0.720 1.097 0.534 0.489 0.358 1.944 0.339 0.959 0.241 0.686 829 chr2 1773152 1801076 + 0 NA Intergenic AluSx|SINE|Alu -38795 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 0.144 0.009 0.095 0.150 0.117 0.071 0.067 1.259 3.818 0.200 0.009 0.125 0.184 0.090 0.235 0.050 0.049 0.040 0.014 0.032 0.045 0.075 345 chr12 56544814 56554565 + 0 NA intron (NM_002475, intron 5 of 7) intron (NM_002475, intron 5 of 7) -2356 NM_021019 4637 Hs.632717 NM_021019 ENSG00000092841 MYL6 ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM myosin light chain 6 protein-coding 2.117 1.194 2.350 2.056 3.616 2.043 2.180 1.560 7.048 1.647 0.823 4.121 3.913 2.171 1.538 1.320 1.159 2.998 1.125 1.484 1.240 1.497 172 chr10 25006603 25014496 + 0 NA intron (NM_020824, intron 2 of 25) intron (NM_020824, intron 2 of 25) 2048 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 2.669 2.040 2.868 2.485 7.372 1.166 2.502 1.134 5.355 2.282 0.867 5.636 5.999 3.796 1.281 2.204 1.407 2.575 1.914 3.485 1.659 5.018 596 chr17 7588010 7592930 + 0 NA promoter-TSS (NM_001143991) promoter-TSS (NM_001143991) -288 NM_001143991 55135 Hs.408312 NM_018081 ENSG00000141499 WRAP53 DKCB3|TCAB1|WDR79 WD repeat containing antisense to TP53 protein-coding 3.346 1.901 3.489 4.602 8.168 3.352 4.547 1.493 7.902 4.329 1.544 5.366 4.200 4.786 5.243 1.912 1.852 2.879 4.117 3.712 3.020 1.634 1297 chr6 15282332 15286544 + 0 NA intron (NM_001267040, intron 1 of 17) intron (NM_001267040, intron 1 of 17) 35352 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 0.178 1.093 1.575 0.305 0.138 0.179 3.260 0.215 0.665 0.244 0.345 0.112 0.827 0.164 0.050 0.110 0.059 5.510 1.898 3.588 0.328 5.457 1521 chr8 128799369 128828065 + 0 NA intron (NR_003367, intron 1 of 8) AluSz|SINE|Alu 5509 NR_031609 100302185 NR_031609 ENSG00000249859 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 45.583 2.052 0.532 2.434 3.390 3.055 4.846 1.266 4.829 1.284 0.910 1.661 5.123 1.831 0.949 1.003 1.067 1.872 0.409 4.352 1.006 1.251 1366 chr6 129809741 129815402 + 0 NA intron (NM_000426, intron 56 of 64) intron (NM_000426, intron 56 of 64) 218799 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 1.569 1.041 1.540 0.132 2.063 0.404 6.003 0.564 3.192 1.442 0.531 4.001 0.501 1.349 1.935 0.042 0.021 4.858 3.885 2.889 0.020 6.227 223 chr11 12741692 12750928 + 0 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 50341 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 2.608 0.255 0.980 0.452 1.673 3.197 1.470 0.084 0.195 1.612 0.268 1.967 0.891 0.671 0.824 0.750 0.972 0.767 2.163 0.695 1.168 1.772 613 chr17 27068520 27075473 + 0 NA intron (NM_004295, intron 1 of 6) intron (NM_004295, intron 1 of 6) 973 NM_004295 9618 Hs.8375 NM_004295 ENSG00000076604 TRAF4 CART1|MLN62|RNF83 TNF receptor associated factor 4 protein-coding 6.656 2.689 4.961 3.940 6.810 1.516 4.585 1.420 7.367 4.641 3.047 10.698 8.492 3.795 2.219 3.071 2.177 4.014 4.052 4.432 2.223 5.481 721 chr18 19744429 19761159 + 0 NA intron (NM_005257, intron 2 of 6) intron (NM_005257, intron 2 of 6) 3396 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 0.691 3.026 0.330 0.479 1.252 0.027 1.005 0.371 0.729 0.431 0.130 2.336 0.751 0.832 0.455 0.283 0.224 0.916 0.373 5.570 0.343 0.592 1255 chr5 141092253 141097269 + 0 NA Intergenic L2c|LINE|L2 -32961 NM_022481 64411 Hs.726187 NM_022481 ENSG00000120318 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 1.167 0.938 0.633 0.107 0.609 4.164 1.054 0.015 0.015 0.209 0.357 3.881 0.406 0.582 0.636 0.029 0.073 0.149 0.017 2.091 0.046 0.319 1043 chr22 45131060 45165843 + 0 NA promoter-TSS (NM_001017526) promoter-TSS (NM_001017526) 13 NM_001017526 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 0.721 0.050 0.393 3.790 0.316 0.044 0.058 0.025 0.059 0.332 0.123 0.823 0.852 0.123 0.138 1.349 1.205 0.016 0.083 0.092 3.716 0.346 282 chr11 101979347 101992400 + 0 NA intron (NM_001282100, intron 2 of 7) intron (NM_001282100, intron 2 of 7) 2702 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 3.542 1.314 2.371 1.670 2.872 3.203 5.155 0.654 3.006 2.572 1.031 5.209 3.592 2.014 2.450 1.797 1.308 2.430 1.608 2.637 1.779 1.924 669 chr17 48246894 48251789 + 0 NA non-coding (NR_024193, exon 1 of 1) non-coding (NR_024193, exon 1 of 1) 496 NR_024192 373861 Hs.25934 NM_194072 HILS1 H1.9 histone linker H1 domain, spermatid-specific 1 (pseudogene) pseudo 0.149 0.379 0.196 0.087 0.296 0.118 0.448 0.214 0.174 0.325 0.146 0.191 0.226 0.471 0.150 0.078 0.075 0.706 0.009 0.311 0.047 4.818 1082 chr3 71094662 71115817 + 0 NA intron (NM_032682, intron 7 of 20) L1ME1|LINE|L1 8835 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 0.570 0.708 0.765 3.270 0.864 0.134 2.424 0.240 0.885 0.235 0.111 1.501 0.222 0.630 0.992 0.811 1.117 0.770 0.191 1.590 2.701 0.086 420 chr14 50098856 50103023 + 0 NA exon (NM_018139, exon 1 of 3) exon (NM_018139, exon 1 of 3) 1009 NM_018139 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 5.833 1.813 6.594 3.420 15.646 3.158 5.515 1.602 7.877 6.711 1.340 9.587 12.706 2.493 2.262 2.414 1.432 2.588 1.388 1.761 1.406 1.933 1066 chr3 46463317 46469317 + 0 NA Intergenic Intergenic 17268 NM_001130910 9034 Hs.535713 NM_003965 ENSG00000121797 CCRL2 ACKR5|CKRX|CRAM|CRAM-A|CRAM-B|HCR C-C motif chemokine receptor like 2 protein-coding 0.106 2.234 0.145 0.174 0.364 1.006 0.624 1.736 0.203 0.027 0.125 0.133 0.383 0.172 0.038 0.384 0.822 5.129 0.038 0.796 121 chr1 203991995 204001490 + 0 NA Intergenic Intergenic 13650 NR_027902 284573 Hs.406979 NR_027902 ENSG00000176754 LINC00303 C1orf157|NCRNA00303 long intergenic non-protein coding RNA 303 ncRNA 0.246 0.080 8.548 0.326 0.072 0.097 0.049 0.072 0.294 0.058 0.128 0.289 0.097 0.209 0.904 1.228 0.021 0.004 0.094 7.787 0.088 639 chr17 39926843 39958291 + 0 NA intron (NM_021991, intron 1 of 14) CpG 397 NM_002230 3728 Hs.514174 NM_002230 ENSG00000173801 JUP ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB junction plakoglobin protein-coding 1.740 0.201 2.535 0.859 3.266 1.318 0.968 0.126 0.250 3.555 2.038 3.956 3.260 0.789 0.738 1.218 0.952 0.755 0.758 0.381 0.654 1.408 952 chr20 32319873 32323095 + 0 NA intron (NR_104259, intron 1 of 13) intron (NR_104259, intron 1 of 13) 1918 NM_001282935 84905 Hs.516989 NM_032819 ENSG00000131061 ZNF341 - zinc finger protein 341 protein-coding 5.629 0.653 9.112 2.749 2.367 3.223 3.101 1.567 3.692 2.247 1.932 6.453 4.362 3.834 1.875 0.957 0.588 3.071 2.448 1.647 1.915 3.922 989 chr20 52515862 52535604 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -33485 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 0.799 0.276 1.124 0.303 0.544 0.316 2.657 2.083 4.525 0.987 1.172 1.817 2.993 1.386 0.823 0.198 0.245 2.904 0.303 0.764 0.298 1.769 1505 chr8 102433116 102487509 + 0 NA Intergenic Intergenic -44355 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 1.236 0.061 0.330 0.130 1.238 0.166 2.342 0.125 0.168 1.283 0.600 2.503 5.278 0.221 0.510 0.121 0.235 0.116 1.106 0.146 0.066 1.258 1071 chr3 49393630 49397245 + 0 NA exon (NM_201397, exon 1 of 1) exon (NM_201397, exon 1 of 1) 596 NM_201397 2876 Hs.76686 NM_000581 ENSG00000233276 GPX1 GPXD|GSHPX1 glutathione peroxidase 1 protein-coding 2.734 2.778 3.633 1.447 6.674 1.696 4.837 1.397 5.610 3.325 0.869 5.302 4.238 2.878 2.554 0.755 0.703 3.371 1.698 4.789 0.568 2.058 494 chr15 74213169 74224683 + 0 NA 5' UTR (NM_005576, exon 1 of 7) 5' UTR (NM_005576, exon 1 of 7) 127 NM_005576 4016 Hs.65436 NM_005576 ENSG00000129038 LOXL1 LOL|LOXL lysyl oxidase like 1 protein-coding 0.129 3.399 0.374 0.186 0.835 0.516 1.250 1.179 5.660 0.589 0.210 1.419 0.342 0.484 0.353 0.347 0.188 5.168 0.227 5.683 0.046 0.115 487 chr15 71850596 71856056 + 0 NA intron (NM_001286429, intron 1 of 11) AluY|SINE|Alu 13785 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 0.147 1.721 0.200 0.321 0.314 0.157 0.215 0.031 0.176 0.239 0.232 2.134 0.139 0.130 0.840 0.028 0.045 0.091 0.023 5.597 0.348 0.105 1348 chr6 85468779 85475176 + 0 NA intron (NM_001080508, intron 2 of 7) intron (NM_001080508, intron 2 of 7) 1977 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box 18 protein-coding 0.130 2.535 0.063 2.703 4.566 0.023 0.102 0.063 0.068 3.062 0.087 0.180 1.506 0.022 0.081 0.025 0.038 0.053 0.007 5.101 2.044 0.044 238 chr11 46257907 46275872 + 0 NA Intergenic AluY|SINE|Alu -32300 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS cAMP responsive element binding protein 3 like 1 protein-coding 1.068 0.881 0.474 1.012 3.272 0.628 1.897 2.834 7.864 1.444 0.331 1.038 1.674 1.274 0.327 0.317 0.288 2.465 0.234 1.885 0.249 0.417 873 chr2 114081150 114089095 + 0 NA Intergenic Intergenic -48624 NM_003466 7849 Hs.469728 NM_003466 ENSG00000125618 PAX8 - paired box 8 protein-coding 1.613 2.576 1.089 0.229 2.868 0.094 6.461 1.163 5.185 1.864 1.076 2.934 1.189 0.404 1.955 0.225 0.230 3.139 0.544 5.549 0.124 4.094 1137 chr3 181496141 181517829 + 0 NA Intergenic AluSp|SINE|Alu 77273 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box 2 protein-coding 0.310 0.160 0.213 3.824 nan 0.097 0.316 0.063 0.139 1.418 0.388 0.490 3.443 0.084 0.139 0.743 1.162 0.028 0.054 0.262 5.831 0.109 577 chr16 88331747 88343537 + 0 NA Intergenic Intergenic 109755 NR_110944 101928880 Hs.634835 NR_110944 ENSG00000260420 LOC101928880 LA16c-444G7.2 uncharacterized LOC101928880 ncRNA 0.155 0.462 0.179 0.163 0.251 0.091 0.121 1.611 5.083 0.787 0.224 0.642 0.320 0.287 0.133 0.009 0.011 0.874 0.011 0.987 0.049 0.098 253 chr11 63294756 63300503 + 0 NA Intergenic MER58A|DNA|hAT-Charlie -6644 NM_004585 5920 Hs.17466 NM_004585 ENSG00000133321 RARRES3 HRASLS4|HRSL4|PLA1/2-3|RIG1|TIG3 retinoic acid receptor responder 3 protein-coding 2.749 0.065 3.310 0.182 0.560 0.174 4.916 0.133 0.060 1.412 0.254 0.520 0.205 0.192 0.975 0.256 0.320 0.791 0.367 0.117 0.120 4.098 448 chr14 95998145 96003138 + 0 NA promoter-TSS (NM_016417) promoter-TSS (NM_016417) 568 NR_003138 283596 Hs.448753 NR_001459 SNHG10 C14orf62|LINC00063|NCRNA00063 small nucleolar RNA host gene 10 ncRNA 2.844 0.546 6.033 1.917 4.895 2.050 2.826 0.995 4.049 3.319 1.001 4.185 7.206 1.133 1.538 1.292 1.168 2.292 1.494 0.669 1.751 0.948 1227 chr5 71658195 71689321 + 0 NA Intergenic Intergenic 57564 NM_001284404 79810 Hs.126906 NM_024754 ENSG00000049883 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 0.233 0.311 0.244 0.128 0.189 0.083 0.542 1.345 3.943 0.203 0.063 0.268 0.187 0.894 0.194 0.043 0.062 1.260 0.049 0.660 0.178 0.095 1417 chr7 64457394 64467766 + 0 NA intron (NM_001007253, intron 1 of 1) MER92B|LTR|ERV1 4544 NM_001007253 2086 Hs.250693 NM_001007253 ENSG00000213462 ERV3-1 ERV-R|ERV3|ERVR|HERV-R|HERVR|envR endogenous retrovirus group 3 member 1 protein-coding 1.205 0.478 1.012 0.316 1.185 0.358 1.021 0.251 1.100 1.025 0.608 5.794 6.405 2.428 0.440 0.414 0.560 0.330 0.384 1.045 0.220 1.808 216 chr11 9480749 9485394 + 0 NA promoter-TSS (NR_036539) promoter-TSS (NR_036539) 559 NM_001282656 7702 Hs.523471 NM_003442 ENSG00000166478 ZNF143 SBF|STAF|pHZ-1 zinc finger protein 143 protein-coding 5.280 2.026 4.365 5.061 8.826 4.559 4.863 1.165 8.250 11.098 1.149 9.730 9.172 4.037 2.558 1.852 1.778 4.714 2.272 3.914 3.750 1.708 852 chr2 62930848 62935474 + 0 NA promoter-TSS (NM_001142614) promoter-TSS (NM_001142614) 160 NM_001142616 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 1.055 0.776 4.780 2.149 4.189 1.709 2.539 3.769 12.916 3.667 1.440 2.955 5.702 1.991 0.880 1.777 1.073 1.143 0.238 0.649 1.241 1.073 643 chr17 40713478 40720434 + 0 NA intron (NM_025233, intron 4 of 8) intron (NM_025233, intron 4 of 8) -2122 NM_198205 6945 Hs.383019 NM_170607 ENSG00000108788 MLX MAD7|MXD7|TCFL4|TF4|bHLHd13 MLX, MAX dimerization protein protein-coding 2.660 0.748 3.390 2.262 4.271 2.048 4.026 0.739 2.274 3.582 1.356 5.972 5.190 2.029 1.212 1.512 1.170 2.191 1.782 1.038 0.933 1.472 63 chr1 94126931 94149017 + 0 NA intron (NM_001261408, intron 4 of 13) intron (NM_001261408, intron 4 of 13) 8952 NM_001261409 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 1.115 1.211 0.311 0.243 0.606 3.480 3.398 0.624 2.106 0.848 0.611 1.508 4.496 2.346 0.481 0.329 0.300 1.953 1.198 2.463 0.249 0.958 1120 chr3 169489250 169494323 + 0 NA promoter-TSS (NM_001185119) promoter-TSS (NM_001185119) -267 NM_001185119 55892 Hs.507025 NM_018657 ENSG00000085274 MYNN OSZF|SBBIZ1|ZBTB31|ZNF902 myoneurin protein-coding 2.390 1.513 3.193 5.103 9.552 1.132 3.783 1.271 7.386 6.121 2.197 7.765 23.827 3.025 1.541 2.212 1.872 2.258 2.221 1.666 4.054 2.156 179 chr10 48326097 48344556 + 0 NA Intergenic Intergenic -3129 NR_134500 107001062 Hs.576719 NR_134500 LOC107001062 - uncharacterized LOC107001062 ncRNA 0.257 0.564 1.233 0.041 1.365 0.669 0.582 1.013 1.652 0.826 1.880 3.648 1.920 0.949 0.636 0.033 0.079 1.543 1.165 1.199 0.051 0.641 1532 chr8 145039183 145052052 + 0 NA intron (NM_000445, intron 2 of 32) intron (NM_000445, intron 2 of 32) 2080 NM_201378 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 0.757 0.452 0.759 0.623 5.773 0.661 8.289 0.568 1.355 1.210 0.517 2.650 2.024 0.907 0.777 0.580 0.373 0.479 1.118 0.424 0.188 0.426 1475 chr8 38032978 38035662 + 0 NA promoter-TSS (NR_045493) promoter-TSS (NR_045493) -72 NR_045492 27257 Hs.425311 NM_014462 ENSG00000175324 LSM1 CASM|YJL124C LSM1 homolog, mRNA degradation associated protein-coding 4.410 2.583 3.275 13.966 15.951 2.579 2.656 0.957 7.087 7.250 7.235 7.375 7.766 6.320 3.332 3.840 3.106 2.980 2.180 2.209 7.214 1.184 1105 chr3 151019141 151039408 + 0 NA intron (NM_023915, intron 1 of 2) intron (NM_023915, intron 1 of 2) 5362 NM_023915 53836 Hs.591292 NM_023915 ENSG00000138271 GPR87 FKSG78|GPR95|KPG_002 G protein-coupled receptor 87 protein-coding 0.415 0.286 0.704 0.132 4.660 0.041 0.705 0.067 0.308 1.069 2.738 3.699 3.577 1.071 0.567 0.043 0.071 0.675 2.664 0.564 0.045 4.818 1187 chr4 114876438 114882946 + 0 NA intron (NM_024590, intron 1 of 1) intron (NM_024590, intron 1 of 1) 21186 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ - arylsulfatase family member J protein-coding 2.738 0.935 3.148 1.160 1.694 0.468 2.692 0.531 3.021 0.187 0.210 1.238 0.211 0.259 1.608 0.182 0.491 2.233 1.384 2.360 0.285 4.470 713 chr17 79816513 79831676 + 0 NA Intergenic Intergenic 4756 NM_001185077 396 Hs.159161 NM_004309 ENSG00000141522 ARHGDIA GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1 Rho GDP dissociation inhibitor alpha protein-coding 2.668 1.334 4.114 3.152 6.209 1.262 3.537 0.790 3.082 3.676 1.386 6.134 4.478 3.570 2.391 2.747 1.723 2.147 1.082 1.691 1.479 1.008 676 chr17 49189371 49210971 + 0 NA Intergenic AluSg|SINE|Alu -1945 NM_003971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 1.092 0.413 1.564 0.645 1.681 0.517 2.522 0.257 1.225 1.420 0.394 1.924 2.583 1.310 0.625 0.456 0.338 0.819 0.933 0.674 0.383 1.219 1334 chr6 43137912 43142526 + 0 NA promoter-TSS (NM_001292001) promoter-TSS (NM_001292001) 91 NM_001292001 6722 Hs.520140 NM_003131 ENSG00000112658 SRF MCM1 serum response factor protein-coding 2.235 1.135 2.350 2.175 4.689 1.324 5.223 2.675 5.972 1.489 1.923 4.407 5.269 2.735 1.344 1.677 0.757 1.730 1.011 1.016 0.667 1.973 1251 chr5 138605904 138631895 + 0 NA TTS (NR_036536) TTS (NR_036536) 4430 NR_002915 26821 Hs.684893 NR_002915 ENSG00000200959 SNORA74A RNU19|U19 small nucleolar RNA, H/ACA box 74A snoRNA 1.107 0.491 1.823 2.526 3.832 1.140 1.497 0.341 1.526 1.311 0.416 1.854 7.116 1.508 0.572 0.863 0.812 0.981 0.460 0.840 1.684 0.851 277 chr11 75034307 75042103 + 0 NA intron (NM_020251, intron 1 of 14) AluYc|SINE|Alu 8025 NR_029891 442900 NR_029891 ENSG00000199090 MIR326 MIRN326|hsa-mir-326|mir-326 microRNA 326 ncRNA 0.617 0.540 3.573 0.114 0.198 0.883 1.647 0.232 0.654 0.347 0.030 0.194 0.374 0.458 0.340 0.015 0.035 0.965 0.129 1.201 0.050 0.326 1192 chr4 129435054 129451652 + 0 NA Intergenic L2a|LINE|L2 94182 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LOC100507487 - uncharacterized LOC100507487 ncRNA 1.702 0.395 0.339 0.345 0.361 0.260 1.148 1.278 4.068 0.454 0.082 0.376 0.229 0.192 0.283 0.047 0.089 3.324 1.198 1.066 0.128 2.065 879 chr2 122390856 122414232 + 0 NA intron (NM_001142274, intron 1 of 37) AluJb|SINE|Alu 4508 NM_015282 23332 Hs.469840 NM_015282 ENSG00000074054 CLASP1 MAST1 cytoplasmic linker associated protein 1 protein-coding 0.733 0.339 1.278 1.023 2.198 0.998 1.503 0.283 1.677 1.659 0.519 1.136 3.551 0.831 1.605 0.668 0.676 0.618 0.569 0.614 0.605 0.464 938 chr20 17535931 17553649 + 0 NA intron (NM_001278608, intron 1 of 9) AluJb|SINE|Alu 5075 NM_001278608 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 4.373 0.692 1.383 0.199 2.354 0.676 4.835 1.608 3.761 2.667 1.823 3.380 3.674 1.127 2.411 0.565 0.512 3.035 3.910 1.437 0.153 1.897 1620 chrX 10543300 10550112 + 0 NA intron (NM_033290, intron 1 of 9) intron (NM_033290, intron 1 of 9) -1749 NM_001193277 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 0.121 0.018 1.030 6.571 1.533 2.225 0.068 0.056 0.099 1.519 0.201 1.437 2.141 1.243 0.184 0.490 1.031 0.074 0.313 0.163 7.154 0.385 1095 chr3 125067573 125079141 + 0 NA intron (NM_021964, intron 1 of 8) intron (NM_021964, intron 1 of 8) 20841 NM_021964 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 0.240 0.075 0.230 5.350 0.474 0.178 0.121 0.028 0.136 0.394 0.085 0.316 8.541 0.187 0.239 0.096 0.232 0.035 0.032 0.202 3.346 0.204 1183 chr4 88432648 88455477 + 0 NA intron (NM_001128310, intron 1 of 11) Kanga2_a|DNA|TcMar-Tc2 6593 NM_001128310 8404 Hs.62886 NM_004684 ENSG00000152583 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC like 1 protein-coding 0.372 0.060 0.042 0.112 0.260 0.017 0.118 0.020 0.075 0.668 0.573 0.723 11.850 0.043 0.050 0.023 0.047 0.039 0.077 0.052 0.050 0.087 1262 chr5 151062973 151066977 + 0 NA intron (NR_109873, intron 3 of 4) (TC)n|Simple_repeat|Simple_repeat 1640 NM_003118 6678 Hs.111779 NM_003118 ENSG00000113140 SPARC BM-40|OI17|ON secreted protein acidic and cysteine rich protein-coding 0.148 3.340 1.620 0.323 0.378 0.496 5.936 1.549 7.433 0.891 0.406 0.378 0.183 1.106 0.729 0.038 0.031 3.648 5.871 0.144 0.047 1444 chr7 100460476 100474726 + 0 NA intron (NM_003302, intron 4 of 8) MER1A|DNA|hAT-Charlie 1943 NR_106935 102466755 NR_106935 ENSG00000087077 MIR6875 hsa-mir-6875 microRNA 6875 ncRNA 4.249 1.434 4.446 1.313 7.358 0.820 1.450 0.985 4.259 3.437 2.336 8.886 7.433 3.556 2.056 0.756 0.491 2.542 2.307 1.879 0.822 0.899 1290 chr6 10399368 10421117 + 0 NA exon (NM_003220, exon 2 of 7) exon (NM_003220, exon 2 of 7) -2309 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 1.159 1.607 3.653 4.337 9.187 2.323 3.872 0.931 2.400 2.464 0.948 3.540 5.551 3.798 2.570 1.810 1.574 0.931 1.633 3.544 4.121 2.272 1527 chr8 144676845 144682330 + 0 NA promoter-TSS (NM_032862) promoter-TSS (NM_032862) -4 NM_001330646 1936 Hs.333388 NM_001960 ENSG00000104529 EEF1D EF-1D|EF1D|FP1047 eukaryotic translation elongation factor 1 delta protein-coding 1.771 1.196 1.435 4.078 8.443 2.236 13.643 1.552 4.579 6.554 1.161 7.688 4.401 1.264 1.941 2.658 1.477 1.151 3.005 1.032 1.664 0.805 1132 chr3 179039089 179043868 + 0 NA promoter-TSS (NM_016331) promoter-TSS (NM_016331) -73 NM_016331 51193 Hs.632578 NM_016331 ENSG00000121864 ZNF639 ANC-2H01|ANC_2H01|ZASC1 zinc finger protein 639 protein-coding 1.136 0.570 2.359 4.113 11.829 1.306 4.169 1.709 6.168 12.758 2.634 9.752 13.682 2.740 1.433 1.923 1.690 2.029 0.843 0.626 2.570 1.452 929 chr2 240312737 240324460 + 0 NA intron (NM_006037, intron 1 of 26) intron (NM_006037, intron 1 of 26) 4045 NM_006037 9759 Hs.20516 NM_006037 ENSG00000068024 HDAC4 AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA histone deacetylase 4 protein-coding 0.660 0.306 1.158 6.256 1.324 0.919 1.252 0.280 0.727 1.090 0.432 1.274 2.235 0.722 0.468 2.384 1.953 0.509 0.384 0.446 3.936 0.322 133 chr1 226057937 226071638 + 0 NA intron (NM_014698, intron 3 of 24) intron (NM_014698, intron 3 of 24) 5633 NM_014698 9725 Hs.119387 NM_014698 ENSG00000196187 TMEM63A KIAA0792 transmembrane protein 63A protein-coding 4.322 0.172 0.443 1.077 1.795 0.767 0.636 0.308 0.728 1.400 0.711 3.567 3.475 1.123 2.529 0.984 0.691 0.515 1.690 0.196 0.530 2.290 123 chr1 205140970 205146077 + 0 NA intron (NM_015375, intron 2 of 12) AluSx4|SINE|Alu 37204 NM_015375 25778 Hs.6874 NM_015375 ENSG00000133059 DSTYK CAKUT1|DustyPK|HDCMD38P|RIP5|RIPK5 dual serine/threonine and tyrosine protein kinase protein-coding 0.249 2.472 0.180 0.230 0.792 0.911 1.595 1.133 3.626 0.934 0.102 0.610 1.750 1.412 0.937 0.015 0.048 5.205 0.468 6.738 0.091 0.697 304 chr12 4139632 4141983 + 0 NA Intergenic CpG -158193 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 0.269 4.263 0.299 0.091 2.687 0.159 1.317 1.495 6.895 1.089 2.812 2.009 0.961 1.605 0.175 0.067 0.605 0.108 7.933 0.030 547 chr16 31461075 31472548 + 0 NA Intergenic Intergenic -2783 NM_001288767 79798 Hs.732945 NM_024742 ENSG00000140691 ARMC5 AIMAH2 armadillo repeat containing 5 protein-coding 1.600 1.004 1.580 2.088 6.036 1.422 3.955 0.650 2.368 3.057 1.543 4.258 14.942 1.545 0.691 0.904 0.516 1.903 0.858 2.041 0.936 0.733 631 chr17 37019022 37040989 + 0 NA intron (NR_073384, intron 1 of 7) intron (NR_073384, intron 1 of 7) 3893 NM_006148 3927 Hs.741156 NM_006148 ENSG00000002834 LASP1 Lasp-1|MLN50 LIM and SH3 protein 1 protein-coding 1.700 1.037 1.890 1.489 2.310 2.232 3.142 0.599 2.983 1.317 0.729 2.622 1.776 1.603 0.743 1.145 0.851 3.777 1.949 2.172 1.067 1.877 1616 chr9 140171037 140173805 + 0 NA intron (NM_017723, intron 1 of 1) intron (NM_017723, intron 1 of 1) 141 NM_017723 54863 Hs.495541 NM_017723 ENSG00000198113 TOR4A C9orf167 torsin family 4 member A protein-coding 4.889 1.944 10.478 0.116 0.160 5.129 2.809 0.489 1.608 0.293 0.028 8.617 0.065 0.025 3.176 0.028 0.127 5.633 2.687 3.328 1.597 1583 chr9 110815062 110876548 + 0 NA Intergenic Intergenic -593804 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 0.223 0.087 0.360 3.074 0.292 0.704 0.263 0.113 0.305 0.411 0.103 0.222 0.458 0.130 0.112 0.886 1.145 0.318 0.265 0.223 5.520 0.170 1544 chr8 146072463 146079566 + 0 NA 3' UTR (NM_001081004, exon 2 of 2) 3' UTR (NM_001081004, exon 2 of 2) 2438 NM_001081004 28991 Hs.493218 NM_014066 ENSG00000170619 COMMD5 HCARG|HT002 COMM domain containing 5 protein-coding 1.228 0.628 0.691 1.490 3.122 0.902 10.092 1.435 4.710 1.848 0.528 2.062 2.139 2.792 0.793 0.971 0.558 1.126 1.028 0.925 0.470 2.152 1538 chr8 145580468 145583859 + 0 NA promoter-TSS (NM_012162) promoter-TSS (NM_012162) 20 NM_024555 26233 Hs.12271 NM_012162 ENSG00000182325 FBXL6 FBL6|FBL6A|PP14630 F-box and leucine rich repeat protein 6 protein-coding 2.114 1.314 1.353 1.846 8.081 1.240 14.469 1.604 4.627 4.746 1.319 6.381 4.362 1.841 1.656 2.935 1.845 1.148 2.056 0.757 0.611 0.865 396 chr13 107158563 107188957 + 0 NA intron (NM_004093, intron 1 of 4) intron (NM_004093, intron 1 of 4) 13628 NM_004093 1948 Hs.149239 NM_004093 ENSG00000125266 EFNB2 EPLG5|HTKL|Htk-L|LERK5 ephrin B2 protein-coding 1.534 0.253 0.718 0.151 1.507 0.179 0.342 0.412 1.252 1.274 0.745 0.972 2.718 0.400 0.484 0.630 0.757 0.352 0.319 0.260 0.091 0.494 258 chr11 64029932 64045565 + 0 NA TTS (NM_001316314) TTS (NM_001316314) -14063 NM_001170726 56834 Hs.523763 NM_020155 ENSG00000173264 GPR137 C11orf4|GPR137A|TM7SF1L1 G protein-coupled receptor 137 protein-coding 1.907 0.924 1.226 1.512 3.511 1.052 2.492 0.423 1.339 1.338 0.672 3.565 2.903 1.243 1.092 0.789 0.621 1.533 0.822 1.946 0.632 0.825 1631 chrX 153594577 153608747 + 0 NA intron (NM_001110556, intron 1 of 47) intron (NM_001110556, intron 1 of 47) 1344 NM_001110556 2316 Hs.195464 NM_001456 ENSG00000196924 FLNA ABP-280|ABPX|CSBS|CVD1|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD filamin A protein-coding 2.432 1.506 1.989 1.932 4.161 1.199 4.660 0.795 3.405 2.162 0.998 2.567 3.316 2.805 1.915 0.670 0.410 2.819 2.270 2.450 0.961 1.774 1422 chr7 73235988 73257744 + 0 NA 3' UTR (NM_001305, exon 1 of 1) 3' UTR (NM_001305, exon 1 of 1) 1673 NM_001305 1364 Hs.647036 NM_001305 ENSG00000189143 CLDN4 CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R claudin 4 protein-coding 6.154 0.244 4.259 0.323 1.449 1.637 2.465 0.354 0.623 1.661 1.517 6.275 5.527 3.109 1.599 0.357 0.485 1.770 2.765 0.346 0.233 2.651 482 chr15 67339768 67343262 + 0 NA intron (NR_135686, intron 2 of 5) intron (NR_135686, intron 2 of 5) 15005 NR_135686 102723493 Hs.419760 NR_135686 LOC102723493 - uncharacterized LOC102723493 ncRNA 2.978 4.026 3.544 0.242 4.336 0.922 4.570 1.117 2.718 1.388 1.631 4.587 3.309 2.299 1.583 0.022 7.307 3.667 8.499 0.065 2.522 949 chr20 30939764 30953208 + 0 NA 5' UTR (NM_015338, exon 1 of 12) 5' UTR (NM_015338, exon 1 of 12) 339 NM_015338 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS additional sex combs like 1, transcriptional regulator protein-coding 1.805 1.105 2.900 4.824 2.278 2.027 4.297 2.324 9.843 1.544 0.658 2.444 3.027 1.876 1.777 0.812 0.629 6.340 0.733 2.423 4.129 1.543 499 chr15 78364894 78370048 + 0 NA intron (NM_144572, intron 1 of 12) MIRb|SINE|MIR 2523 NM_144572 23102 Hs.567426 NM_015079 ENSG00000167202 TBC1D2B - TBC1 domain family member 2B protein-coding 0.822 2.354 1.137 1.054 2.024 1.661 2.281 0.410 0.997 0.859 0.281 2.079 0.943 1.210 1.131 0.547 0.263 1.091 0.285 4.878 0.155 0.367 56 chr1 59279111 59297081 + 0 NA intron (NR_108106, intron 1 of 1) MIRb|SINE|MIR 37273 NR_034015 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 1.210 0.331 1.543 0.357 0.924 0.998 1.563 1.077 3.654 0.478 0.365 1.043 0.836 1.057 0.826 0.210 0.298 3.332 2.485 0.587 0.243 1.331 1369 chr6 135585311 135593967 + 0 NA Intergenic AluJr|SINE|Alu 29341 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 0.275 0.010 0.106 8.368 0.183 0.038 0.108 0.011 0.341 0.037 0.404 0.100 0.103 0.131 0.769 1.092 0.016 0.013 5.106 0.066 1151 chr3 189427199 189431376 + 0 NA intron (NM_001114978, intron 1 of 12) intron (NM_001114978, intron 1 of 12) -78162 NM_001114980 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 0.639 0.449 0.360 0.141 nan 0.092 5.053 2.954 3.083 1.541 0.693 0.585 0.843 0.260 0.501 0.037 0.028 0.974 0.951 1.145 0.457 1.060 54 chr1 59218958 59231877 + 0 NA Intergenic MIRb|SINE|MIR 24368 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 0.315 1.026 0.447 0.141 0.300 0.169 4.673 0.641 1.962 0.355 0.099 0.440 2.618 0.488 0.709 0.035 0.130 6.216 0.902 2.568 0.070 1.252 306 chr12 6469755 6502820 + 0 NA intron (NM_001270987, intron 1 of 9) L2c|LINE|L2 236 NM_001159575 6337 Hs.591047 NM_001038 ENSG00000111319 SCNN1A BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1 sodium channel epithelial 1 alpha subunit protein-coding 5.228 0.805 1.897 2.849 3.458 1.530 2.897 0.331 1.069 2.411 1.996 4.665 5.636 1.688 1.822 1.652 1.342 3.613 2.307 1.331 1.900 1.814 1204 chr5 262121 273552 + 0 NA Intergenic Intergenic 3803 NR_104613 102467073 Hs.368328 NR_104613 HRAT5 - heart tissue-associated transcript 5 ncRNA 1.125 0.249 1.013 1.057 1.822 0.866 5.782 0.658 2.568 2.305 0.548 3.233 2.535 1.264 1.307 0.855 0.592 1.167 0.132 0.525 0.301 0.686 70 chr1 109631013 109644777 + 0 NA non-coding (NR_136242, exon 4 of 4) non-coding (NR_136242, exon 4 of 4) 4492 NM_020141 56900 Hs.82933 NM_020141 ENSG00000215717 TMEM167B AD-020|C1orf119 transmembrane protein 167B protein-coding 1.341 0.466 0.967 1.484 2.863 0.715 2.194 0.508 2.129 1.405 0.413 2.142 6.813 1.836 0.721 0.592 0.521 1.181 0.465 0.755 0.793 0.774 1047 chr22 50219442 50222240 + 0 NA intron (NM_001304808, intron 1 of 12) C-rich|Low_complexity|Low_complexity 355 NM_001304808 23774 Hs.127950 NM_014577 ENSG00000100425 BRD1 BRL|BRPF1|BRPF2 bromodomain containing 1 protein-coding 3.374 0.708 1.928 2.999 3.904 0.646 6.513 1.096 3.795 4.975 5.154 6.881 7.787 3.594 6.096 2.397 1.746 1.550 0.539 0.577 1.231 1.080 839 chr2 28650951 28677934 + 0 NA Intergenic Intergenic -46903 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 0.423 0.294 0.370 0.157 1.332 0.144 0.481 0.434 0.370 1.286 1.660 1.479 3.124 0.634 0.287 0.175 0.197 0.628 0.340 0.545 0.080 0.291 1055 chr3 9434167 9445659 + 0 NA promoter-TSS (NR_027007) promoter-TSS (NR_027007) 529 NM_001292043 55209 Hs.288164 NM_018187 ENSG00000168137 SETD5 - SET domain containing 5 protein-coding 2.096 1.261 2.475 5.406 3.937 2.795 2.325 0.892 4.307 2.379 0.665 3.431 3.961 3.003 1.240 1.124 1.039 2.843 1.005 2.384 3.264 1.236 1276 chr5 172378516 172387224 + 0 NA non-coding (NR_026682, exon 4 of 4) non-coding (NR_026682, exon 4 of 4) -2862 NM_001317981 51121 Hs.546390 NM_016093 ENSG00000037241 RPL26L1 RPL26P1 ribosomal protein L26 like 1 protein-coding 0.490 2.630 1.166 1.053 1.730 1.833 1.504 0.962 3.519 1.123 0.359 0.762 1.060 2.218 0.809 0.478 0.293 8.197 0.216 6.860 0.470 1.391 166 chr10 11592382 11597484 + 0 NA intron (NM_014688, intron 2 of 14) L1PB4|LINE|L1 -20654 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 0.422 0.413 0.639 0.231 0.672 0.416 0.393 0.264 0.824 0.495 0.387 0.536 0.621 0.207 0.695 0.142 0.784 0.944 0.633 0.268 7.909 1578 chr9 106987216 106999802 + 0 NA Intergenic MLT2F|LTR|ERVL -39001 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 0.160 0.590 0.102 0.070 0.101 0.060 0.281 1.317 5.415 0.214 0.019 0.105 0.165 0.233 0.033 0.037 0.049 0.339 0.144 1.636 0.027 0.052 88 chr1 154971486 154979184 + 0 NA non-coding (NR_045515, exon 2 of 6) non-coding (NR_045515, exon 2 of 6) 229 NM_001252406 51043 Hs.729279 NM_001252406 ENSG00000160685 ZBTB7B CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX zinc finger and BTB domain containing 7B protein-coding 10.042 1.432 2.365 5.558 6.797 3.231 5.184 0.768 2.799 3.877 1.769 10.141 12.973 3.726 5.583 4.005 3.233 3.924 2.418 2.453 3.456 4.439 1009 chr21 36507370 36513155 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR -88667 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 0.644 0.407 0.489 0.148 3.445 0.089 0.271 0.462 0.611 2.235 1.734 2.179 0.395 0.640 0.361 0.054 0.021 3.300 6.065 1.057 0.020 5.174 30 chr1 27166201 27195536 + 0 NA 3' UTR (NM_032283, exon 8 of 8) 3' UTR (NM_032283, exon 8 of 8) -8765 NM_006142 2810 Hs.523718 NM_006142 ENSG00000175793 SFN YWHAS stratifin protein-coding 1.175 0.609 0.642 0.631 3.024 0.466 0.782 0.369 1.151 2.712 0.987 2.914 5.558 0.786 0.443 0.261 0.297 1.190 1.481 1.214 0.382 1.589 141 chr1 234666700 234682166 + 0 NA Intergenic Intergenic -6908 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 0.524 0.104 0.126 0.527 2.846 0.089 0.664 0.393 0.521 3.658 1.760 3.563 4.890 0.539 0.275 0.163 0.195 0.184 0.024 0.134 0.235 0.153 909 chr2 202121691 202125806 + 0 NA intron (NM_001080125, intron 1 of 8) MIRb|SINE|MIR 994 NR_111983 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 3.617 0.722 6.251 0.286 5.089 3.668 7.803 1.054 5.199 1.634 0.889 4.169 6.772 3.126 2.975 0.178 0.591 4.317 3.415 1.709 0.451 4.318 403 chr14 23443103 23453411 + 0 NA intron (NM_001289097, intron 1 of 1) intron (NM_001289097, intron 1 of 1) -1825 NM_198086 84962 Hs.655832 NM_032876 ENSG00000129474 AJUBA JUB ajuba LIM protein protein-coding 6.407 2.919 3.022 0.488 10.103 1.965 8.379 2.521 11.097 5.759 2.430 11.476 3.327 2.330 2.725 0.390 0.471 10.246 1.717 5.309 0.166 2.372 466 chr15 50645257 50649033 + 0 NA promoter-TSS (NR_026891) promoter-TSS (NR_026891) -69 NR_026891 55056 Hs.511316 NM_017976 ENSG00000104064 FLJ10038 - uncharacterized protein FLJ10038 ncRNA 4.626 4.504 5.971 7.730 14.295 5.000 7.173 1.960 9.554 7.859 3.533 12.713 11.674 4.864 3.928 4.376 3.842 5.981 3.013 6.278 6.996 2.095 1124 chr3 172322516 172326590 + 0 NA Intergenic L1MA9|LINE|L1 -83256 NM_001190942 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL tumor necrosis factor superfamily member 10 protein-coding 0.157 2.588 0.248 0.142 0.255 0.019 3.300 1.092 1.549 0.627 0.780 1.079 0.761 0.272 0.068 0.039 0.120 1.365 0.289 9.306 0.852 1.531 1230 chr5 72730866 72748000 + 0 NA Intergenic Intergenic 4919 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 0.578 0.571 1.211 1.298 0.922 1.252 0.202 0.994 3.758 0.735 0.263 2.013 1.202 2.780 0.569 0.836 0.677 0.188 0.051 1.053 0.554 0.259 75 chr1 145609648 145623165 + 0 NA intron (NM_014455, intron 1 of 8) L1P4|LINE|L1 -5362 NM_006468 10623 Hs.515768 NM_006468 ENSG00000186141 POLR3C RPC3|RPC62 RNA polymerase III subunit C protein-coding 1.471 0.394 0.554 0.905 2.048 0.618 1.319 0.944 4.515 1.435 0.357 1.621 2.250 1.736 1.564 0.944 0.932 1.706 0.630 0.534 0.587 1.993 134 chr1 226097977 226113083 + 0 NA Intergenic FLAM_A|SINE|Alu 4312 NR_106799 102466270 NR_106799 ENSG00000143811 MIR6741 hsa-mir-6741 microRNA 6741 ncRNA 1.300 0.107 0.392 1.023 2.689 0.342 0.767 0.271 0.837 2.296 1.925 4.186 6.569 0.601 0.905 0.521 0.377 0.503 0.256 0.169 0.497 0.341 618 chr17 33410929 33417487 + 0 NA intron (NR_037713, intron 1 of 6) AluJb|SINE|Alu 2140 NR_037713 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding 4.496 1.555 4.313 2.071 2.879 1.909 3.022 0.303 0.626 1.875 1.134 5.482 5.963 2.390 1.414 0.798 0.444 2.938 5.557 3.112 1.211 3.673 848 chr2 60755840 60783249 + 0 NA intron (NM_138559, intron 2 of 4) intron (NM_138559, intron 2 of 4) 11089 NM_018014 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 B-cell CLL/lymphoma 11A protein-coding 0.901 0.018 0.237 0.601 2.443 0.116 0.153 0.195 0.746 1.808 1.638 1.991 7.455 0.087 0.220 1.432 1.179 0.287 0.025 0.037 0.180 0.086 1163 chr4 4239248 4263532 + 0 NA Intergenic AluSg|SINE|Alu -1421 NM_001297552 85013 Hs.12845 NM_032927 ENSG00000132406 TMEM128 - transmembrane protein 128 protein-coding 0.513 0.133 0.313 3.526 0.514 0.139 0.712 0.155 0.698 0.436 0.134 0.263 0.441 0.245 0.372 0.732 0.944 0.346 0.119 0.229 3.593 0.157 450 chr14 99724390 99741662 + 0 NA intron (NM_138576, intron 1 of 3) intron (NM_138576, intron 1 of 3) 5024 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha B-cell CLL/lymphoma 11B protein-coding 0.160 0.014 0.389 0.433 6.431 0.098 0.547 0.086 0.244 2.111 0.717 2.022 2.212 0.061 0.246 0.105 0.126 0.004 0.082 0.038 0.153 0.077 1629 chrX 153234333 153239382 + 0 NA promoter-TSS (NM_005334) promoter-TSS (NM_005334) -38 NM_005334 3054 Hs.83634 NM_005334 ENSG00000172534 HCFC1 CFF|HCF|HCF-1|HCF1|HFC1|MRX3|PPP1R89|VCAF host cell factor C1 protein-coding 4.022 2.684 4.015 5.778 9.549 2.811 5.717 1.178 5.620 6.040 2.021 4.913 7.816 3.780 4.105 1.886 1.646 4.570 5.420 4.254 4.337 2.863 1323 chr6 35357253 35362963 + 0 NA intron (NM_001171819, intron 2 of 6) intron (NM_001171819, intron 2 of 6) 49773 NM_177435 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 0.317 1.128 0.135 0.085 2.223 1.496 3.470 0.783 1.987 1.126 0.987 1.423 0.951 1.622 0.838 0.054 0.022 6.181 0.133 2.356 0.094 5.048 1455 chr7 139758179 139763683 + 0 NA intron (NM_022750, intron 1 of 11) intron (NM_022750, intron 1 of 11) 2590 NM_022750 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding 0.897 2.002 1.872 0.738 2.221 0.401 3.402 0.949 3.656 1.710 0.833 1.946 2.420 8.091 1.305 0.897 0.768 3.487 2.118 3.819 0.476 0.981 1405 chr7 27236009 27245455 + 0 NA non-coding (NR_037843, exon 2 of 3) non-coding (NR_037843, exon 2 of 3) 692 NR_037843 100316868 Hs.199486 NR_037843 HOTTIP HOXA-AS6|HOXA13-AS1|NCRNA00213 HOXA distal transcript antisense RNA ncRNA 0.271 0.184 6.847 0.306 0.643 0.072 0.747 0.140 0.110 0.422 0.279 2.065 0.319 0.214 0.444 0.268 0.139 0.014 0.044 0.106 0.098 0.040 1060 chr3 12343418 12353688 + 0 NA intron (NM_138711, intron 1 of 7) AluY|SINE|Alu -5326 NM_001330615 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 0.228 0.276 2.088 0.094 0.218 0.074 1.416 0.178 0.410 0.217 0.032 0.583 0.108 0.224 0.606 0.023 0.026 2.117 1.610 0.637 0.040 3.257 1492 chr8 71578381 71582688 + 0 NA intron (NM_016027, intron 1 of 6) intron (NM_016027, intron 1 of 6) 913 NM_016027 51110 Hs.118554 NM_016027 ENSG00000147592 LACTB2 CGI-83 lactamase beta 2 protein-coding 1.439 1.167 6.202 0.993 2.301 1.003 3.381 0.950 6.239 1.581 0.994 3.072 3.748 2.595 1.961 0.950 0.762 1.354 1.021 2.255 0.913 2.724 703 chr17 73867742 73875562 + 0 NA intron (NM_033452, intron 4 of 5) intron (NM_033452, intron 4 of 5) 3004 NM_033452 91107 Hs.293660 NM_033452 ENSG00000132481 TRIM47 GOA|RNF100 tripartite motif containing 47 protein-coding 5.295 1.425 8.510 1.012 3.288 0.961 5.666 0.861 1.290 3.333 2.614 8.725 1.771 3.755 2.911 0.630 0.561 0.919 4.262 1.984 0.367 2.165 900 chr2 180606428 180611905 + 0 NA intron (NM_152520, intron 3 of 9) intron (NM_152520, intron 3 of 9) 1603 NM_001113397 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 0.137 0.023 0.058 8.865 0.147 0.098 0.134 0.088 0.147 0.331 0.030 0.077 0.201 0.103 0.133 0.044 0.037 0.101 8.437 0.070 1134 chr3 179321267 179323853 + 0 NA promoter-TSS (NM_001199957) promoter-TSS (NM_001199957) -15 NM_001199958 4711 Hs.730674 NM_002492 ENSG00000136521 NDUFB5 CISGDH|SGDH NADH:ubiquinone oxidoreductase subunit B5 protein-coding 2.504 1.101 2.228 6.426 13.866 1.063 3.747 1.097 6.526 13.813 2.536 8.809 13.383 3.598 1.134 2.333 1.656 1.816 1.249 1.888 4.221 1.145 318 chr12 12909697 12913770 + 0 NA intron (NM_001130415, intron 1 of 1) Tigger7|DNA|TcMar-Tigger -5850 NR_030344 693198 NR_030344 ENSG00000207983 MIR613 MIRN613|hsa-mir-613 microRNA 613 ncRNA 0.397 2.467 0.636 0.184 0.236 0.736 2.961 0.039 0.540 0.367 0.097 0.809 0.963 0.118 2.149 0.137 0.030 3.745 4.624 5.239 0.057 0.648 972 chr20 48844588 48864213 + 0 NA Intergenic AluSz|SINE|Alu -29623 NM_001278655 100506115 Hs.235484 NM_001278655 LINC01272 - long intergenic non-protein coding RNA 1272 protein-coding 0.275 0.164 0.238 0.289 1.092 0.035 0.346 0.206 0.106 0.754 0.464 2.257 2.081 0.189 0.048 0.162 0.205 0.048 1.134 0.168 0.433 0.532 1100 chr3 141100249 141132694 + 0 NA intron (NM_001080412, intron 6 of 7) Tigger1|DNA|TcMar-Tigger 73416 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 0.739 0.565 0.265 0.630 0.911 0.355 0.800 0.121 0.283 0.730 0.366 1.432 7.181 1.413 0.295 0.226 0.235 0.971 0.166 1.076 1.016 0.377 473 chr15 63447401 63450716 + 0 NA intron (NM_015920, intron 1 of 3) intron (NM_015920, intron 1 of 3) 683 NM_015920 51065 Hs.108957 NM_015920 ENSG00000185088 RPS27L - ribosomal protein S27 like protein-coding 2.281 4.147 4.058 2.636 6.690 2.791 5.173 1.333 7.635 3.028 1.051 4.002 4.338 4.957 2.668 1.576 1.209 3.001 1.717 7.093 0.992 1.054 1377 chr6 170097261 170103944 + 0 NA intron (NM_182552, intron 1 of 25) MLT1D|LTR|ERVL-MaLR 1557 NM_182552 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 1.448 0.611 1.011 2.647 2.492 1.417 3.050 0.586 2.249 2.618 0.487 6.269 1.698 2.370 1.371 0.961 0.767 0.974 0.358 0.872 0.882 0.338 1461 chr7 150064091 150082568 + 0 NA Intergenic MIRb|SINE|MIR -3077 NM_173680 285971 Hs.655734 NM_173680 ENSG00000196456 ZNF775 - zinc finger protein 775 protein-coding 2.707 0.657 3.445 3.592 3.454 1.276 2.601 0.570 2.188 1.683 1.235 2.104 2.577 3.064 1.769 1.518 1.085 0.903 0.794 0.859 2.715 0.362 3 chr1 3369917 3391619 + 0 NA intron (NM_014448, intron 2 of 14) intron (NM_014448, intron 2 of 14) 9621 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 0.545 0.289 0.158 0.227 0.969 0.356 0.090 0.150 0.163 0.425 0.362 4.014 0.950 0.468 0.096 0.362 0.223 0.012 0.095 0.385 0.143 0.267 185 chr10 71131770 71153326 + 0 NA intron (NM_001322365, intron 15 of 22) intron (NM_001322365, intron 15 of 22) 34126 NM_001057 6865 Hs.88372 NM_001057 ENSG00000075073 TACR2 NK2R|NKNAR|SKR|TAC2R tachykinin receptor 2 protein-coding 0.777 0.259 0.141 0.828 1.395 0.112 0.177 0.022 0.099 1.246 1.220 1.903 6.392 0.210 0.121 0.276 0.265 0.172 0.031 0.474 0.707 0.101 248 chr11 62301953 62329799 + 0 NA Intergenic AluSz|SINE|Alu -1544 NM_001620 79026 Hs.502756 NM_001620 ENSG00000124942 AHNAK AHNAKRS|PM227 AHNAK nucleoprotein protein-coding 3.172 1.321 4.126 0.338 4.581 2.613 3.364 0.924 3.813 1.818 0.865 5.173 2.623 3.301 2.370 0.309 0.292 4.948 3.781 2.710 0.177 2.356 146 chr1 239991560 240003405 + 0 NA intron (NM_001347716, intron 7 of 7) (CA)n|Simple_repeat|Simple_repeat 65690 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 0.254 0.087 5.661 0.292 0.084 0.031 0.080 0.211 0.041 0.111 0.259 0.070 0.095 1.235 1.556 0.017 0.011 0.047 8.312 0.073 1351 chr6 99271161 99294121 + 0 NA promoter-TSS (NM_005604) promoter-TSS (NM_005604) 61 NM_005604 5454 Hs.182505 NM_005604 ENSG00000184486 POU3F2 BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7 POU class 3 homeobox 2 protein-coding 0.217 0.065 0.093 8.826 0.111 0.116 0.211 0.048 3.258 0.130 0.010 0.197 0.158 0.848 0.208 3.740 3.506 0.648 0.011 0.055 6.297 0.025 356 chr12 66205621 66230750 + 0 NA promoter-TSS (NM_003484) promoter-TSS (NM_003484) -55 NM_003484 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 0.523 0.355 0.870 0.106 5.632 1.134 1.066 0.076 0.491 1.441 0.867 6.949 2.092 0.439 2.094 1.387 1.208 2.662 2.594 0.578 0.148 1.574 802 chr19 45905022 45910698 + 0 NA intron (NM_001142502, intron 1 of 12) L2|LINE|L2 452 NM_006663 10848 Hs.466937 NM_006663 ENSG00000104881 PPP1R13L IASPP|NKIP1|RAI|RAI4 protein phosphatase 1 regulatory subunit 13 like protein-coding 6.326 1.463 1.865 1.823 10.645 4.119 3.545 1.399 5.356 10.018 2.207 8.241 9.218 3.655 2.035 1.071 1.018 3.570 4.354 3.296 1.213 3.107 4 chr1 3457710 3461349 + 0 NA intron (NM_001409, intron 4 of 36) intron (NM_001409, intron 4 of 36) 17825 NR_030277 693135 NR_030277 ENSG00000207776 MIR551A MIRN551A|mir-551a microRNA 551a ncRNA 0.089 2.994 0.046 0.176 0.223 0.042 2.154 2.074 4.244 0.418 0.064 0.697 0.119 3.573 0.201 0.021 0.100 4.076 0.023 5.409 0.035 0.519 528 chr16 3054512 3061590 + 0 NA Intergenic Intergenic -4406 NM_020982 9080 Hs.296949 NM_020982 ENSG00000213937 CLDN9 - claudin 9 protein-coding 2.130 0.132 0.632 0.260 0.659 0.324 1.212 0.372 0.964 0.655 0.435 2.116 0.277 0.319 0.719 0.143 0.068 0.364 1.752 0.268 0.036 3.156 164 chr10 8406256 8412643 + 0 NA Intergenic L1PA12|LINE|L1 -99181 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 2.018 0.465 1.965 0.184 0.217 0.864 0.044 0.781 2.322 0.278 0.037 0.092 0.235 0.221 0.278 0.060 0.038 1.636 0.007 1.463 0.053 5.969 807 chr19 47360539 47379804 + 0 NA Intergenic Intergenic -15919 NM_004069 1175 Hs.119591 NM_004069 ENSG00000042753 AP2S1 AP17|CLAPS2|FBH3|FBHOk|HHC3 adaptor related protein complex 2 sigma 1 subunit protein-coding 2.588 0.688 1.399 0.848 1.522 1.520 1.651 0.344 1.207 1.341 0.674 1.589 4.834 1.045 1.703 0.514 0.347 1.016 0.375 1.416 0.655 0.378