PeakID (cmd=annotatePeaks.pl SCLC_BL4000_overlaps3.bed hg19)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
1801	chr14	68774171	68774467	+	0	NA	intron (NM_001321809, intron 8 of 11)	intron (NM_001321809, intron 8 of 11)	321185	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
5006	chr6	110138461	110138606	+	0	NA	intron (NM_014845, intron 22 of 22)	intron (NM_014845, intron 22 of 22)	-64114	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
3074	chr2	68925955	68926057	+	0	NA	Intergenic	Intergenic	-35907	NM_001007231	9938	Hs.531807	NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
3509	chr20	26305654	26305689	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-115802	NR_040095	284801	Hs.370699	NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
4863	chr6	61913638	61913737	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-370321	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
3163	chr2	92268613	92268974	+	0	NA	Intergenic	HSATII|Satellite|Satellite	139634	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
1178	chr12	41682105	41682297	+	0	NA	intron (NM_001164595, intron 3 of 9)	intron (NM_001164595, intron 3 of 9)	99951	NM_001164595	29951	Hs.380044	NM_013377	ENSG00000165966	PDZRN4	LNX4|SAMCAP3L	PDZ domain containing ring finger 4	protein-coding
4628	chr6	1724208	1724362	+	0	NA	intron (NM_001500, intron 9 of 10)	intron (NM_001500, intron 9 of 10)	113604	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
6459	chrY	13864442	13864454	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	668941	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1387	chr12	123543031	123543200	+	0	NA	intron (NM_020845, intron 1 of 24)	intron (NM_020845, intron 1 of 24)	-22816	NR_038290	100507091	Hs.683912	NR_038290	ENSG00000251497	LOC100507091	-	uncharacterized LOC100507091	ncRNA
1932	chr14	91621765	91622042	+	0	NA	intron (NM_001286470, intron 4 of 16)	AluJb|SINE|Alu	29133	NR_003709	100124539	Hs.693444	NR_003709	ENSG00000221102	SNORA11B	-	small nucleolar RNA, H/ACA box 11B	snoRNA
458	chr1	218422953	218423397	+	0	NA	Intergenic	Intergenic	-35454	NM_016052	51018	Hs.660109	NM_016052	ENSG00000067533	RRP15	CGI-115|KIAA0507	ribosomal RNA processing 15 homolog	protein-coding
2634	chr18	31895534	31895727	+	0	NA	Intergenic	Intergenic	-92115	NM_001198546	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
1785	chr14	68487153	68487486	+	0	NA	intron (NM_001321809, intron 7 of 11)	L1ME4a|LINE|L1	197010	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
4361	chr4	166319827	166319912	+	0	NA	intron (NM_001873, intron 1 of 8)	intron (NM_001873, intron 1 of 8)	12475	NR_030304	693163		NR_030304	ENSG00000207559	MIR578	MIRN578|hsa-mir-578	microRNA 578	ncRNA
5521	chr7	154671127	154671217	+	0	NA	intron (NM_001936, intron 20 of 25)	AluYf4|SINE|Alu	-49055	NR_024477	100132707	Hs.586358	NR_024476	ENSG00000214106	PAXIP1-AS2	PAXIP1OS	PAXIP1 antisense RNA 2	ncRNA
5499	chr7	146332417	146332482	+	0	NA	intron (NM_014141, intron 1 of 23)	intron (NM_014141, intron 1 of 23)	462252	NR_110829	101928700	Hs.571218	NR_110829	ENSG00000236795	LOC101928700	-	uncharacterized LOC101928700	ncRNA
1250	chr12	96068346	96068798	+	0	NA	TTS (NR_077225)	TTS (NR_077225)	25541	NR_077225	100132594	Hs.676211	NR_077225	ENSG00000257150	PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
2507	chr17	59286024	59286293	+	0	NA	intron (NM_001330413, intron 23 of 25)	intron (NM_001330413, intron 23 of 25)	158907	NR_136397	101927855	Hs.662123	NR_136397	ENSG00000267131	LOC101927855	-	uncharacterized LOC101927855	ncRNA
5810	chr8	140807873	140808003	+	0	NA	intron (NM_031466, intron 21 of 22)	intron (NM_031466, intron 21 of 22)	-92639	NM_001282534	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
4893	chr6	81237114	81237623	+	0	NA	Intergenic	Intergenic	421041	NM_001318975	594	Hs.654441	NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
3957	chr3	129838971	129839133	+	0	NA	Intergenic	Intergenic	-8776	NR_024252	729375	Hs.123633	NR_024252		FAM86HP	-	family with sequence similarity 86, member A pseudogene	pseudo
1630	chr14	20801070	20801361	+	0	NA	intron (NM_021178, intron 1 of 6)	intron (NM_021178, intron 1 of 6)	256	NM_021178	57820	Hs.107003	NM_021178	ENSG00000100814	CCNB1IP1	C14orf18|HEI10	cyclin B1 interacting protein 1	protein-coding
3497	chr20	19091392	19091482	+	0	NA	Intergenic	Charlie22a|DNA|hAT-Charlie	-101853	NM_020689	57419	Hs.654790	NM_020689	ENSG00000185052	SLC24A3	NCKX3	solute carrier family 24 member 3	protein-coding
4340	chr4	151287494	151287580	+	0	NA	intron (NM_006726, intron 48 of 57)	intron (NM_006726, intron 48 of 57)	-215540	NM_006439	10586	Hs.584852	NM_006439	ENSG00000181541	MAB21L2	MCOPS14	mab-21 like 2	protein-coding
3185	chr2	92301355	92301367	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	172202	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
3109	chr2	89865139	89865908	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	753639	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
3919	chr3	114618474	114618870	+	0	NA	intron (NM_001164343, intron 3 of 11)	intron (NM_001164343, intron 3 of 11)	797	NR_121662	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
728	chr10	101773934	101774239	+	0	NA	Intergenic	Intergenic	-4376	NM_015221	23268	Hs.500771	NM_015221	ENSG00000107554	DNMBP	ARHGEF36|TUBA	dynamin binding protein	protein-coding
1244	chr12	94221497	94221667	+	0	NA	intron (NM_001320100, intron 2 of 2)	L1MB1|LINE|L1	-89983	NR_110092	101928731	Hs.659971	NR_110092	ENSG00000258274	LOC101928731	-	uncharacterized LOC101928731	ncRNA
1638	chr14	27289231	27289292	+	0	NA	intron (NR_110556, intron 4 of 4)	L1M5|LINE|L1	2065	NR_110033	101927062		NR_110033	ENSG00000257845	LOC101927062	-	uncharacterized LOC101927062	ncRNA
5060	chr6	149492741	149492800	+	0	NA	Intergenic	Intergenic	-46290	NM_001292035	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
3936	chr3	123937463	123937627	+	0	NA	intron (NM_001024660, intron 1 of 59)	intron (NM_001024660, intron 1 of 59)	85769	NR_049798	100847021		NR_049798	ENSG00000266383	MIR5002	-	microRNA 5002	ncRNA
29	chr1	8767070	8767392	+	0	NA	intron (NM_001042681, intron 1 of 22)	intron (NM_001042681, intron 1 of 22)	110468	NM_012102	473	Hs.463041	NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
5831	chr9	1495764	1495903	+	0	NA	Intergenic	Intergenic	445213	NM_181872	10655	Hs.59506	NM_006557	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
350	chr1	169453373	169453490	+	0	NA	intron (NM_006996, intron 1 of 5)	intron (NM_006996, intron 1 of 5)	1777	NM_006996	10560	Hs.30246	NM_006996	ENSG00000117479	SLC19A2	TC1|THMD1|THT1|THTR1|TRMA	solute carrier family 19 member 2	protein-coding
4087	chr4	8040301	8040351	+	0	NA	intron (NM_001130083, intron 9 of 20)	L2c|LINE|L2	-33218	NR_029511	407052		NR_029511	ENSG00000207807	MIR95	MIRN95|hsa-mir-95|miR-95	microRNA 95	ncRNA
1969	chr14	100287125	100288184	+	0	NA	intron (NM_001008707, intron 1 of 22)	intron (NM_001008707, intron 1 of 22)	27909	NM_001008707	2009	Hs.12451	NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAPL|HuEMAP	echinoderm microtubule associated protein like 1	protein-coding
6233	chrUn_gl000225	133623	133951	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
1810	chr14	70103001	70103314	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	24847	NM_014734	9766	Hs.440025	NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
2203	chr16	26676624	26676754	+	0	NA	Intergenic	Intergenic	-401530	NM_001145545	162083	Hs.120831	NM_182831	ENSG00000234186	C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
6358	chrY	13448564	13448934	+	0	NA	Intergenic	(CACTC)n|Simple_repeat|Simple_repeat	1084640	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4358	chr4	157737398	157737608	+	0	NA	intron (NM_016205, intron 2 of 5)	intron (NM_016205, intron 2 of 5)	155043	NM_016205	56034	Hs.570855	NM_016205	ENSG00000145431	PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
2754	chr18	55565988	55566283	+	0	NA	Intergenic	Intergenic	-95808	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
1546	chr13	99057562	99057792	+	0	NA	intron (NM_005766, intron 13 of 26)	intron (NM_005766, intron 13 of 26)	116702	NM_003576	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
2994	chr2	42476896	42477032	+	0	NA	intron (NM_001145076, intron 2 of 21)	intron (NM_001145076, intron 2 of 21)	-79593	NR_110584	102723824	Hs.639826	NR_110584		LOC102723824	-	uncharacterized LOC102723824	ncRNA
4003	chr3	170957308	170957611	+	0	NA	intron (NM_001161560, intron 2 of 31)	L3|LINE|CR1	-132911	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
3256	chr2	146189261	146189653	+	0	NA	Intergenic	Intergenic	763923	NR_033870	401014	Hs.742290	NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
311	chr1	149034659	149035076	+	0	NA	intron (NR_104217, intron 2 of 17).2	HSATII|Satellite|Satellite	74858	NR_104217	101929780	Hs.534675	NR_104217	ENSG00000272150	NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family member 25, pseudogene	pseudo
4537	chr5	125055561	125055873	+	0	NA	Intergenic	Intergenic	226763	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
4836	chr6	53792291	53792403	+	0	NA	Intergenic	AluSz|SINE|Alu	-2433	NR_125842	101927189	Hs.453592	NR_125842	ENSG00000236740	LOC101927189	-	uncharacterized LOC101927189	ncRNA
3844	chr3	37534399	37534575	+	0	NA	intron (NM_002207, intron 4 of 27)	intron (NM_002207, intron 4 of 27)	40674	NM_002207	3680	Hs.113157	NM_002207	ENSG00000144668	ITGA9	ALPHA-RLC|ITGA4L|RLC	integrin subunit alpha 9	protein-coding
825	chr11	21675715	21675773	+	0	NA	Intergenic	Intergenic	-538978	NM_213599	203859	Hs.154329	NM_213599	ENSG00000171714	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
917	chr11	61716802	61716935	+	0	NA	promoter-TSS (NR_134580)	promoter-TSS (NR_134580)	-488	NM_001300787	7439	Hs.524910	NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|RP50|TU15B|VMD2	bestrophin 1	protein-coding
3431	chr2	235007374	235007639	+	0	NA	Intergenic	Intergenic	48160	NM_006944	6694	Hs.444488	NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
6003	chr9	95715548	95715777	+	0	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	6061	NM_001083536	89846	Hs.411081	NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
4977	chr6	105768943	105769173	+	0	NA	intron (NM_002726, intron 10 of 14)	intron (NM_002726, intron 10 of 14)	81941	NM_002726	5550	Hs.436564	NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
495	chr1	229357320	229357355	+	0	NA	Intergenic	Intergenic	-46789	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
4501	chr5	93227285	93227500	+	0	NA	intron (NR_028080, intron 4 of 8)	intron (NR_028080, intron 4 of 8)	-150083	NM_153216	134187	Hs.678995	NM_153216	ENSG00000248483	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding
3889	chr3	105176467	105176662	+	0	NA	intron (NM_001243280, intron 1 of 14)	intron (NM_001243280, intron 1 of 14)	91007	NM_001243280	214	Hs.591293	NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
3302	chr2	169588476	169588616	+	0	NA	intron (NM_203463, intron 8 of 9)	intron (NM_203463, intron 8 of 9)	54393	NR_045787	100861402	Hs.506829	NR_045786	ENSG00000227617	CERS6-AS1	-	CERS6 antisense RNA 1	ncRNA
2086	chr15	70818904	70819137	+	0	NA	Intergenic	Intergenic	59925	NR_135691	101929151	Hs.434703	NR_135691	ENSG00000280639	LOC101929151	-	uncharacterized LOC101929151	ncRNA
1322	chr12	106255116	106255398	+	0	NA	Intergenic	Intergenic	154705	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
1816	chr14	70181014	70181187	+	0	NA	3' UTR (NM_014734, exon 6 of 6)	3' UTR (NM_014734, exon 6 of 6)	-52704	NM_006925	6430	Hs.632326	NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
5804	chr8	134966725	134966983	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	68115	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
5174	chr7	29371732	29371857	+	0	NA	intron (NM_001293070, intron 2 of 13)	MIR|SINE|MIR	-123208	NR_120522	102724484	Hs.638665	NR_120522		LOC102724484	-	uncharacterized LOC102724484	ncRNA
2460	chr17	32701554	32701910	+	0	NA	Intergenic	Intergenic	-11480	NM_002981	6346	Hs.72918	NM_002981	ENSG00000108702	CCL1	I-309|P500|SCYA1|SISe|TCA3	C-C motif chemokine ligand 1	protein-coding
4293	chr4	113987226	113987240	+	0	NA	intron (NM_001148, intron 1 of 45)	intron (NM_001148, intron 1 of 45)	16448	NM_001148	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding
2699	chr18	43004081	43004248	+	0	NA	intron (NM_001242692, intron 1 of 20)	intron (NM_001242692, intron 1 of 20)	82837	NR_110899	101927980	Hs.591058	NR_110899		SLC14A2-AS1	-	SLC14A2 antisense RNA 1	ncRNA
5067	chr6	153530001	153530124	+	0	NA	Intergenic	Intergenic	-77673	NM_012419	26575	Hs.166313	NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G-protein signaling 17	protein-coding
1259	chr12	97563193	97563452	+	0	NA	Intergenic	Intergenic	262078	NM_001135175	121441	Hs.270084	NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
5464	chr7	131198300	131198546	+	0	NA	intron (NM_001018111, intron 1 of 8)	intron (NM_001018111, intron 1 of 8)	42953	NM_005397	5420	Hs.744213	NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin like	protein-coding
3824	chr3	15325738	15325938	+	0	NA	intron (NM_001018009, intron 3 of 8)	intron (NM_001018009, intron 3 of 8)	30147	NR_046084	100505696	Hs.745026	NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
3574	chr20	47298960	47299223	+	0	NA	intron (NM_020820, intron 10 of 39)	L2a|LINE|L2	145329	NM_020820	57580	Hs.153310	NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
2976	chr2	37962417	37962765	+	0	NA	Intergenic	Intergenic	-62913	NM_001270436	10602	Hs.369574	NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
5401	chr7	114300680	114300840	+	0	NA	intron (NM_148898, intron 14 of 17)	intron (NM_148898, intron 14 of 17)	7360	NR_037439	100500896		NR_037439	ENSG00000272230	MIR3666	-	microRNA 3666	ncRNA
3475	chr20	11332087	11332256	+	0	NA	Intergenic	Intergenic	-78140	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
4319	chr4	139819215	139819758	+	0	NA	intron (NR_133945, intron 2 of 2)	intron (NR_133945, intron 2 of 2)	114314	NR_133945	105377448	Hs.200280	NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
6327	chrX	129984519	129984849	+	0	NA	intron (NM_006375, intron 2 of 14)	intron (NM_006375, intron 2 of 14)	48074	NR_135655	105373338	Hs.642023	NR_135655		LOC105373338	-	uncharacterized LOC105373338	ncRNA
5531	chr8	3048405	3048715	+	0	NA	intron (NM_033225, intron 33 of 69)	L1MB1|LINE|L1	-462569	NR_125425	101927815	Hs.571467	NR_125423	ENSG00000254319	LOC101927815	-	uncharacterized LOC101927815	ncRNA
3421	chr2	230283073	230283098	+	0	NA	intron (NM_139072, intron 8 of 12)	intron (NM_139072, intron 8 of 12)	-147028	NM_001100818	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
3238	chr2	132996609	132996692	+	0	NA	intron (NR_027020, intron 1 of 4)	ALR/Alpha|Satellite|centr	18003	NR_031608	100313824		NR_031608	ENSG00000221288	MIR663B	MIRN663B|mir-663b	microRNA 663b	ncRNA
2274	chr16	46414602	46414712	+	0	NA	Intergenic	HSATII|Satellite|Satellite	188352	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
5938	chr9	70490582	70490773	+	0	NA	promoter-TSS (NM_001286835)	promoter-TSS (NM_001286835)	-466	NM_001286836	220869	Hs.355950	NM_001024916	ENSG00000147996	CBWD5	DC36	COBW domain containing 5	protein-coding
2002	chr15	39655140	39655156	+	0	NA	Intergenic	Intergenic	112278	NM_001302797	400360	Hs.376109	NM_207445		C15orf54	-	chromosome 15 open reading frame 54	ncRNA
4902	chr6	83236149	83236305	+	0	NA	Intergenic	L1M4|LINE|L1	162266	NM_001166392	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
4591	chr5	152502044	152502067	+	0	NA	Intergenic	UCON5|Unknown|Unknown	-150146	NR_109877	101927134	Hs.531423	NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA
1203	chr12	63151622	63152082	+	0	NA	intron (NM_020700, intron 4 of 9)	intron (NM_020700, intron 4 of 9)	154386	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i|let-7i	microRNA let-7i	ncRNA
5508	chr7	146974020	146974501	+	0	NA	intron (NM_014141, intron 8 of 23)	intron (NM_014141, intron 8 of 23)	100953	NR_031645	100313895		NR_031645	ENSG00000221442	MIR548F4	MIR548F-4|MIRN548F4|hsa-mir-548f-4	microRNA 548f-4	ncRNA
5873	chr9	13979407	13979958	+	0	NA	Intergenic	Intergenic	51712	NR_038194	100113404	Hs.149786	NR_038194	ENSG00000205636	LINC00583	C9orf146	long intergenic non-protein coding RNA 583	ncRNA
4261	chr4	83421496	83422189	+	0	NA	intron (NM_001080506, intron 5 of 7)	intron (NM_001080506, intron 5 of 7)	61284	NM_001080506	441027	Hs.507676	NM_001080506	ENSG00000249242	TMEM150C	TTN3	transmembrane protein 150C	protein-coding
2088	chr15	70819295	70819452	+	0	NA	Intergenic	Intergenic	59572	NR_135691	101929151	Hs.434703	NR_135691	ENSG00000280639	LOC101929151	-	uncharacterized LOC101929151	ncRNA
1068	chr11	129716180	129716346	+	0	NA	intron (NM_001331210, intron 2 of 6)	AluSx|SINE|Alu	30587	NM_001331211	120224	Hs.504301	NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
4429	chr5	16931701	16932039	+	0	NA	intron (NM_012334, intron 1 of 40)	intron (NM_012334, intron 1 of 40)	4515	NM_012334	4651	Hs.481720	NM_012334	ENSG00000145555	MYO10	-	myosin X	protein-coding
486	chr1	224504978	224504986	+	0	NA	intron (NM_206840, intron 3 of 21)	intron (NM_206840, intron 3 of 21)	12909	NM_001243147	4931	Hs.497867	NM_002533	ENSG00000143748	NVL	NVL2	nuclear VCP-like	protein-coding
2134	chr15	96369147	96369239	+	0	NA	Intergenic	Intergenic	392871	NR_027132	145820	Hs.652702	NR_027132	ENSG00000259134	LINC00924	-	long intergenic non-protein coding RNA 924	ncRNA
1354	chr12	116561555	116561709	+	0	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	24827	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
4066	chr3	193715603	193715833	+	0	NA	intron (NR_033944, intron 1 of 2)	intron (NR_033944, intron 1 of 2)	-3691	NR_027764	100128023	Hs.730112	NR_027764		DPPA2P3	-	developmental pluripotency associated 2 pseudogene 3	pseudo
4213	chr4	49658914	49659068	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	670332	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
8	chr1	725189	725196	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-11124	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
3239	chr2	133339855	133339932	+	0	NA	intron (NM_001508, intron 1 of 1)	intron (NM_001508, intron 1 of 1)	88050	NM_144586	116372	Hs.432395	NM_144586	ENSG00000150551	LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding
2359	chr16	73251642	73251788	+	0	NA	Intergenic	Intergenic	-73369	NM_207385	388289	Hs.371893	NM_207385		C16orf47	-	chromosome 16 open reading frame 47	protein-coding
5309	chr7	69288486	69288583	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	224629	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
2045	chr15	59879701	59879705	+	0	NA	Intergenic	Intergenic	-24279	NM_004751	9245	Hs.194710	NM_004751	ENSG00000140297	GCNT3	C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding
686	chr10	77468068	77468213	+	0	NA	intron (NR_131178, intron 1 of 7)	intron (NR_131178, intron 1 of 7)	-4073	NR_132791	105378367	Hs.464836	NR_132791		LOC105378367	-	uncharacterized LOC105378367	ncRNA
5310	chr7	69288584	69288603	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	224688	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
3149	chr2	90374351	90374563	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1262573	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
6375	chrY	13458594	13458595	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1074795	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
943	chr11	72083560	72084043	+	0	NA	intron (NM_001258393, intron 3 of 14)	intron (NM_001258393, intron 3 of 14)	61927	NM_001258393	81570	Hs.523877	NM_030813	ENSG00000162129	CLPB	ANKCLB|HSP78|MEGCANN|MGCA7|SKD3	ClpB homolog, mitochondrial AAA ATPase chaperonin	protein-coding
1887	chr14	83291198	83291450	+	0	NA	Intergenic	MIR|SINE|MIR	-1201919	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
4258	chr4	82729426	82729562	+	0	NA	Intergenic	Intergenic	-336412	NM_152545	153020	Hs.591696	NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
1585	chr13	107863415	107863946	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	319916	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
4709	chr6	21201670	21202325	+	0	NA	intron (NM_017774, intron 15 of 15)	intron (NM_017774, intron 15 of 15)	310126	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
4993	chr6	107950933	107951106	+	0	NA	intron (NM_018013, intron 5 of 6)	intron (NM_018013, intron 5 of 6)	102581	NM_001286409	256380	Hs.486109	NM_198081	ENSG00000146285	SCML4	dJ47M23.1	sex comb on midleg-like 4 (Drosophila)	protein-coding
4474	chr5	62959057	62959391	+	0	NA	Intergenic	Intergenic	298895	NM_000524	3350	Hs.247940	NM_000524	ENSG00000178394	HTR1A	5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD	5-hydroxytryptamine receptor 1A	protein-coding
2705	chr18	45490924	45491108	+	0	NA	Intergenic	Intergenic	-33499	NM_001003652	4087	Hs.12253	NM_005901	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
690	chr10	78057507	78057571	+	0	NA	intron (NR_131178, intron 6 of 7)	intron (NR_131178, intron 6 of 7)	515020	NM_032024	83938	Hs.118161	NM_032024	ENSG00000148655	C10orf11	CDA017	chromosome 10 open reading frame 11	protein-coding
5825	chr9	512955	513438	+	0	NA	intron (NM_015158, intron 1 of 11)	intron (NM_015158, intron 1 of 11)	8501	NM_015158	23189	Hs.306764	NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
61	chr1	31329237	31329258	+	0	NA	Intergenic	Intergenic	52233	NM_014654	9672	Hs.158287	NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
4475	chr5	71420110	71420386	+	0	NA	intron (NM_005909, intron 2 of 6)	intron (NM_005909, intron 2 of 6)	17153	NM_005909	4131	Hs.335079	NM_005909	ENSG00000131711	MAP1B	FUTSCH|MAP5|PPP1R102	microtubule associated protein 1B	protein-coding
5215	chr7	57554329	57554654	+	0	NA	Intergenic	HSATII|Satellite|Satellite	44608	NM_001159279	441234	Hs.533121	NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
5970	chr9	85538867	85539127	+	0	NA	Intergenic	Intergenic	139046	NM_152573	158158	Hs.129136	NM_152573	ENSG00000165105	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
4094	chr4	8147733	8147916	+	0	NA	intron (NM_001130083, intron 1 of 20)	intron (NM_001130083, intron 1 of 20)	12735	NM_001130083	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
3540	chr20	29822070	29822078	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-23393	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
6421	chrY	13820041	13820094	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	713322	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4704	chr6	21115814	21116020	+	0	NA	intron (NM_017774, intron 13 of 15)	intron (NM_017774, intron 13 of 15)	396206	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
2394	chr16	84554851	84555299	+	0	NA	Intergenic	MIRb|SINE|MIR	-16787	NM_020947	57707	Hs.288274	NM_020947	ENSG00000140950	TLDC1	KIAA1609	TBC/LysM-associated domain containing 1	protein-coding
1266	chr12	97758996	97759059	+	0	NA	Intergenic	Intergenic	-99772	NR_024037	196475	Hs.652568	NR_024037	ENSG00000255794	RMST	LINC00054|NCRMS|NCRNA00054	rhabdomyosarcoma 2 associated transcript (non-protein coding)	ncRNA
6076	chr9	140222395	140222398	+	0	NA	intron (NM_017820, intron 17 of 21)	intron (NM_017820, intron 17 of 21)	-25693	NM_001004354	441478	Hs.535075	NM_001004354	ENSG00000198435	NRARP	-	NOTCH-regulated ankyrin repeat protein	protein-coding
5780	chr8	120984254	120984539	+	0	NA	intron (NM_022783, intron 4 of 8)	intron (NM_022783, intron 4 of 8)	98501	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR interacting protein	protein-coding
3419	chr2	230282554	230282934	+	0	NA	intron (NM_139072, intron 9 of 12)	intron (NM_139072, intron 9 of 12)	-146687	NM_001100818	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
3326	chr2	179088415	179088599	+	0	NA	intron (NM_001201481, intron 1 of 23)	intron (NM_001201481, intron 1 of 23)	29299	NM_032523	114880	Hs.318775	NM_032523	ENSG00000079156	OSBPL6	ORP6	oxysterol binding protein like 6	protein-coding
5433	chr7	126218788	126219091	+	0	NA	intron (NM_001127323, intron 8 of 10)	intron (NM_001127323, intron 8 of 10)	479299	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
2654	chr18	35084341	35084795	+	0	NA	intron (NM_001025087, intron 1 of 12)	MIRb|SINE|MIR	-38101	NR_132967	106635546		NR_132967		SNORA111	-	small nucleolar RNA, H/ACA box 111	snoRNA
4209	chr4	49651657	49651804	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	663071	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
4144	chr4	49123584	49124058	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	135162	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
4784	chr6	37315241	37315241	+	0	NA	Intergenic	Intergenic	-6507	NR_046399	9025	Hs.485278	NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding
3627	chr21	10826984	10827048	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	163927	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
39	chr1	16280407	16280453	+	0	NA	intron (NM_003443, intron 2 of 15)	intron (NM_003443, intron 2 of 15)	22197	NM_001324138	7709	Hs.433764	NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
5907	chr9	66835278	66835361	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-87648	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
558	chr10	38814514	38814721	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	97543	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
3200	chr2	100124150	100124228	+	0	NA	Intergenic	Intergenic	-17671	NR_135650	51455	Hs.443077	NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1, DNA directed polymerase	protein-coding
5443	chr7	129475362	129475582	+	0	NA	intron (NM_182697, intron 4 of 4)	intron (NM_182697, intron 4 of 4)	-60618	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
5503	chr7	146333182	146333184	+	0	NA	intron (NM_014141, intron 1 of 23)	L1ME1|LINE|L1	461518	NR_110829	101928700	Hs.571218	NR_110829	ENSG00000236795	LOC101928700	-	uncharacterized LOC101928700	ncRNA
5536	chr8	5925031	5925154	+	0	NA	Intergenic	Intergenic	338977	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	ncRNA
573	chr10	38880400	38880828	+	0	NA	Intergenic	HSATII|Satellite|Satellite	-109113	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
2710	chr18	45743718	45743871	+	0	NA	intron (NM_001318841, intron 2 of 4)	intron (NM_001318841, intron 2 of 4)	-80114	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
1084	chr12	2361324	2361686	+	0	NA	intron (NM_001129830, intron 3 of 47)	intron (NM_001129830, intron 3 of 47)	-17437	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
6101	chr9_gl000199_random	43828	45570	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
4570	chr5	141695665	141695893	+	0	NA	intron (NM_001127496, intron 1 of 1)	intron (NM_001127496, intron 1 of 1)	2108	NR_131221	100642175	Hs.684549	NR_131221	ENSG00000281881	SPRY4-IT1	SPRIGHTLY	SPRY4 intronic transcript 1	ncRNA
5324	chr7	77314691	77314863	+	0	NA	intron (NR_134251, intron 1 of 3)	intron (NR_134251, intron 1 of 3)	10805	NR_134251	100505854	Hs.72451	NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator (non-protein coding)	ncRNA
3446	chr2	238578241	238578422	+	0	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	-22476	NM_004735	9208	Hs.471779	NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
638	chr10	42596683	42596685	+	0	NA	Intergenic	Intergenic	266809	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
2350	chr16	68790465	68790689	+	0	NA	intron (NM_004360, intron 2 of 15)	intron (NM_004360, intron 2 of 15)	14158	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
2479	chr17	46271605	46271868	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-37863	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
1	chr1	724127	724131	+	0	NA	Intergenic	MER67C|LTR|ERV1	-10061	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
3218	chr2	109816316	109816452	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-58340	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
506	chr1	244402764	244402921	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-113095	NM_001276349	200159	Hs.442703	NM_001012970	ENSG00000173728	C1orf100	-	chromosome 1 open reading frame 100	protein-coding
5929	chr9	70009670	70009750	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	169105	NM_001126334	653427	Hs.714683	NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4-like 5	protein-coding
5554	chr8	18460159	18460329	+	0	NA	intron (NM_015310, intron 11 of 15)	intron (NM_015310, intron 11 of 15)	206161	NM_206909	23362	Hs.434255	NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
4184	chr4	49158647	49158714	+	0	NA	Intergenic	L1M1|LINE|L1	170021	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
2937	chr2	9318890	9319451	+	0	NA	Intergenic	Intergenic	-27724	NM_001135191	8853	Hs.555902	NM_003887	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
661	chr10	64026369	64026406	+	0	NA	intron (NM_001282941, intron 1 of 4)	intron (NM_001282941, intron 1 of 4)	2235	NM_145307	219790	Hs.58559	NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
3157	chr2	91596530	91596630	+	0	NA	Intergenic	HSATII|Satellite|Satellite	251395	NR_027238	654342	Hs.469287	NR_027238		LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
2845	chr19	32964937	32965195	+	0	NA	intron (NM_207325, intron 16 of 18)	intron (NM_207325, intron 16 of 18)	68044	NM_207325	147991	Hs.194392	NM_207325	ENSG00000178904	DPY19L3	-	dpy-19 like 3 (C. elegans)	protein-coding
2482	chr17	46549884	46550052	+	0	NA	Intergenic	Intergenic	27773	NR_110804	101927166	Hs.149244	NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
2719	chr18	47048096	47048249	+	0	NA	Intergenic	Intergenic	-29237	NM_001199345	6139	Hs.293653	NM_000985	ENSG00000215472	RPL17	L17|PD-1|RPL23	ribosomal protein L17	protein-coding
1935	chr14	91766132	91766330	+	0	NA	intron (NM_001080414, intron 21 of 29)	intron (NM_001080414, intron 21 of 29)	-46007	NM_003485	8111	Hs.8882	NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
2690	chr18	42526866	42527050	+	0	NA	intron (NM_015559, intron 3 of 5)	intron (NM_015559, intron 3 of 5)	23173	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
581	chr10	39078984	39079163	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	89346	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
2727	chr18	49838633	49839174	+	0	NA	Intergenic	Intergenic	-27639	NM_005215	1630	Hs.162025	NM_005215	ENSG00000187323	DCC	CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1	DCC netrin 1 receptor	protein-coding
4046	chr3	182208943	182209220	+	0	NA	Intergenic	Intergenic	-4931	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA
4676	chr6	19535361	19535590	+	0	NA	Intergenic	Intergenic	85423	NR_134615	105374960	Hs.519913	NR_134615		LOC105374960	-	uncharacterized LOC105374960	ncRNA
4200	chr4	49640697	49640727	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	652053	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
4567	chr5	138482598	138483172	+	0	NA	intron (NM_022464, intron 1 of 9)	intron (NM_022464, intron 1 of 9)	51180	NM_022464	64374	Hs.483521	NM_022464	ENSG00000120725	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding
678	chr10	76348907	76348917	+	0	NA	intron (NM_006721, intron 7 of 10)	intron (NM_006721, intron 7 of 10)	-59830	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
4328	chr4	140843296	140843339	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	231916	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
3862	chr3	72712638	72712959	+	0	NA	intron (NR_135531, intron 1 of 1)	intron (NR_135531, intron 1 of 1)	602	NR_135531	105377162	Hs.123457	NR_135531		LOC105377162	-	uncharacterized LOC105377162	ncRNA
1517	chr13	93495739	93495929	+	0	NA	intron (NM_004466, intron 7 of 7)	intron (NM_004466, intron 7 of 7)	-121967	NR_046520	100873969	Hs.577863	NR_046520	ENSG00000235984	GPC5-AS1	-	GPC5 antisense RNA 1	ncRNA
6097	chr9_gl000199_random	39967	42583	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
2808	chr19	6087683	6087869	+	0	NA	intron (NM_134433, intron 1 of 16)	intron (NM_134433, intron 1 of 16)	22888	NM_000635	5990	Hs.465709	NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
3025	chr2	54214905	54215039	+	0	NA	intron (NM_001320587, intron 2 of 5)	L1MD|LINE|L1	16732	NM_001320586	98	Hs.516173	NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
1975	chr14	101213166	101213478	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	20120	NM_001317172	8788	Hs.116631	NM_003836	ENSG00000185559	DLK1	DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2	delta like non-canonical Notch ligand 1	protein-coding
2910	chr2	4428632	4428708	+	0	NA	Intergenic	Intergenic	275142	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
1973	chr14	100489302	100489451	+	0	NA	intron (NM_001330221, intron 1 of 13)	MER5B|DNA|hAT-Charlie	-42375	NM_016337	51466	Hs.125867	NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
1991	chr15	31208751	31209186	+	0	NA	intron (NM_014967, intron 5 of 14)	L2b|LINE|L2	12892	NM_014967	22909	Hs.584863	NM_014967	ENSG00000198690	FAN1	KIAA1018|KMIN|MTMR15|hFAN1	FANCD2 and FANCI associated nuclease 1	protein-coding
927	chr11	67593752	67594025	+	0	NA	Intergenic	Intergenic	-21081	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
5475	chr7	137074851	137074943	+	0	NA	3' UTR (NM_004717, exon 34 of 34)	3' UTR (NM_004717, exon 34 of 34)	-46161	NM_002825	5764	Hs.371249	NM_002825	ENSG00000105894	PTN	HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1	pleiotrophin	protein-coding
5855	chr9	8095725	8096257	+	0	NA	Intergenic	Intergenic	-296185	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
3180	chr2	92298375	92298431	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	169244	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
2302	chr16	52299158	52299371	+	0	NA	intron (NR_135281, intron 1 of 2)	intron (NR_135281, intron 1 of 2)	6788	NR_135281	283854	Hs.266768	NR_135281	ENSG00000260887	CASC22	LINC01373|LincRNA-ENST00000515084|TCONS_00024290	cancer susceptibility candidate 22 (non-protein coding)	ncRNA
4827	chr6	53611228	53611368	+	0	NA	Intergenic	Intergenic	-48480	NM_018214	55227	Hs.606493	NM_018214	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
3849	chr3	42861546	42861845	+	0	NA	intron (NM_001296, intron 2 of 2)	intron (NM_001296, intron 2 of 2)	10731	NM_001296	1238	Hs.146346	NM_001296	ENSG00000144648	ACKR2	CCBP2|CCR10|CCR9|CMKBR9|D6|hD6	atypical chemokine receptor 2	protein-coding
2745	chr18	55464169	55464177	+	0	NA	intron (NM_005603, intron 1 of 27)	intron (NM_005603, intron 1 of 27)	6154	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
652	chr10	42817262	42817446	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	46139	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
2400	chr16	90062157	90062279	+	0	NA	non-coding (NR_003227, exon 10 of 10)	non-coding (NR_003227, exon 10 of 10)	14311	NM_024043	79007	Hs.301394	NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
2034	chr15	57680035	57680142	+	0	NA	intron (NM_032866, intron 1 of 18)	intron (NM_032866, intron 1 of 18)	11385	NM_001252335	84952	Hs.148989	NM_032866	ENSG00000128849	CGNL1	JACOP|PCING	cingulin like 1	protein-coding
4445	chr5	46333918	46334096	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-637787	NM_021072	348980	Hs.353176	NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
4405	chr5	6453080	6453292	+	0	NA	intron (NM_001145161, intron 1 of 1)	intron (NM_001145161, intron 1 of 1)	4450	NM_001145161	134111	Hs.126856	NM_001145161	ENSG00000215218	UBE2QL1	-	ubiquitin conjugating enzyme E2 Q family like 1	protein-coding
3851	chr3	42861887	42861908	+	0	NA	intron (NM_001296, intron 2 of 2)	AluY|SINE|Alu	10933	NM_001296	1238	Hs.146346	NM_001296	ENSG00000144648	ACKR2	CCBP2|CCR10|CCR9|CMKBR9|D6|hD6	atypical chemokine receptor 2	protein-coding
2029	chr15	54129378	54129471	+	0	NA	Intergenic	Intergenic	-74349	NR_102334	256764	Hs.122125	NM_182758	ENSG00000166415	WDR72	AI2A3	WD repeat domain 72	protein-coding
3552	chr20	29832239	29832251	+	0	NA	Intergenic	Intergenic	-13222	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
5671	chr8	81079554	81080514	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	3401	NR_105037	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
844	chr11	33654968	33655159	+	0	NA	intron (NM_012194, intron 15 of 19)	intron (NM_012194, intron 15 of 19)	67223	NM_001166692	100131378	Hs.709466	NM_001166692	ENSG00000205177	C11orf91	-	chromosome 11 open reading frame 91	protein-coding
4447	chr5	46334143	46334153	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-637928	NM_021072	348980	Hs.353176	NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
5767	chr8	109772946	109773080	+	0	NA	intron (NR_136411, intron 1 of 3)	intron (NR_136411, intron 1 of 3)	26831	NM_153015	157753	Hs.99439	NM_153015	ENSG00000164841	TMEM74	NET36	transmembrane protein 74	protein-coding
4552	chr5	132626675	132626842	+	0	NA	intron (NM_015082, intron 6 of 15)	intron (NM_015082, intron 6 of 15)	136640	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
2723	chr18	47685039	47685087	+	0	NA	intron (NM_001080467, intron 1 of 39)	MIR3|SINE|MIR	-32130	NR_036204	100422865		NR_036204	ENSG00000283343	MIR4320	-	microRNA 4320	ncRNA
4218	chr4	53731443	53731723	+	0	NA	exon (NM_023940, exon 4 of 4)	exon (NM_023940, exon 4 of 4)	3088	NM_023940	65997	Hs.8035	NM_023940	ENSG00000128045	RASL11B	-	RAS like family 11 member B	protein-coding
272	chr1	121354157	121354186	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	93261	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
4930	chr6	90709209	90709349	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	105091	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
775	chr11	13156717	13156945	+	0	NA	Intergenic	Intergenic	125861	NM_001080521	644943	Hs.134650	NM_001080521	ENSG00000189431	RASSF10	-	Ras association domain family member 10	protein-coding
2518	chr17	65581010	65581172	+	0	NA	intron (NM_181671, intron 5 of 9)	AluSp|SINE|Alu	-113390	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
5668	chr8	81064118	81064355	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	19199	NR_105037	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
20	chr1	727034	727084	+	0	NA	Intergenic	Intergenic	-12991	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
6010	chr9	97913236	97913471	+	0	NA	intron (NM_001243743, intron 6 of 14)	MER3|DNA|hAT-Charlie	-64977	NR_036109	100422842		NR_036109	ENSG00000207617	MIR3074	mir-3074	microRNA 3074	ncRNA
2376	chr16	79320836	79321582	+	0	NA	Intergenic	Intergenic	313413	NM_005360	4094	Hs.134859	NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
1983	chr14	106651363	106651781	+	0	NA	Intergenic	L1P4|LINE|L1	-92697	NR_033375	338004	Hs.569411	NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
6172	chrUn_gl000216	43220	43468	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5263	chr7	61975781	61975952	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	788568	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
3100	chr2	89851205	89851276	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	739356	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
3787	chr22	30592257	30592407	+	0	NA	Intergenic	Intergenic	50508	NM_001257135	3976	Hs.2250	NM_002309	ENSG00000128342	LIF	CDF|DIA|HILDA|MLPLI	leukemia inhibitory factor	protein-coding
4304	chr4	120855518	120855557	+	0	NA	Intergenic	L1MD1|LINE|L1	-5158	NR_121639	100996694	Hs.119926	NR_121639	ENSG00000250392	LOC100996694	-	uncharacterized LOC100996694	ncRNA
3562	chr20	35271793	35271875	+	0	NA	intron (NM_175077, intron 1 of 7)	intron (NM_175077, intron 1 of 7)	2785	NM_175077	84174	Hs.713578	NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
1627	chr13	114914966	114915318	+	0	NA	Intergenic	Intergenic	-17044	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
4180	chr4	49156092	49157568	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	168171	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
4139	chr4	49118341	49119611	+	0	NA	Intergenic	Intergenic	130317	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
468	chr1	221483587	221483757	+	0	NA	Intergenic	Intergenic	25966	NR_024236	400804	Hs.722626	NR_024236	ENSG00000234754	C1orf140	-	uncharacterized LOC400804	ncRNA
6145	chrUn_gl000216	12150	12363	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
3030	chr2	56701751	56701950	+	0	NA	Intergenic	Intergenic	-288945	NR_125368	100129434	Hs.580330	NR_125368		LOC100129434	-	uncharacterized LOC100129434	ncRNA
1019	chr11	115280877	115281237	+	0	NA	intron (NM_001098517, intron 1 of 8)	intron (NM_001098517, intron 1 of 8)	13583	NR_135102	105369507	Hs.664155	NR_135102	ENSG00000256315	LOC105369507	-	uncharacterized LOC105369507	ncRNA
700	chr10	80289037	80289653	+	0	NA	Intergenic	Intergenic	262260	NR_073447	414243	Hs.55047	NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
78	chr1	35941842	35942020	+	0	NA	intron (NM_024874, intron 4 of 20)	intron (NM_024874, intron 4 of 20)	81106	NM_024874	79932	Hs.456507	NM_024874	ENSG00000142687	KIAA0319L	AAVR	KIAA0319 like	protein-coding
3369	chr2	211495986	211496034	+	0	NA	intron (NM_001122634, intron 11 of 27)	intron (NM_001122634, intron 11 of 27)	13715	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
6274	chrX	58560253	58560400	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-623259	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger, X-linked, duplicated A	protein-coding
5571	chr8	26187423	26187649	+	0	NA	intron (NM_002717, intron 2 of 9)	L1MEc|LINE|L1	36804	NM_001177591	5520	Hs.146339	NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A	protein phosphatase 2 regulatory subunit Balpha	protein-coding
413	chr1	204415945	204416234	+	0	NA	intron (NM_002646, intron 16 of 33)	intron (NM_002646, intron 16 of 33)	-35144	NM_032833	84919	Hs.304376	NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
294	chr1	142539326	142541183	+	0	NA	Intergenic	(GAGTG)n|Simple_repeat|Simple_repeat	173351	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	ankyrin repeat domain 20 family member A12, pseudogene	pseudo
764	chr11	12745862	12746364	+	0	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	50144	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
5342	chr7	86476287	86476404	+	0	NA	intron (NM_000840, intron 4 of 5)	LTR40b|LTR|ERVL	118946	NM_152748	222223	Hs.208093	NM_152748	ENSG00000164659	KIAA1324L	EIG121L	KIAA1324 like	protein-coding
4953	chr6	97052399	97052920	+	0	NA	exon (NM_020482, exon 4 of 7)	exon (NM_020482, exon 4 of 7)	41658	NM_001322467	9457	Hs.632608	NM_020482	ENSG00000112214	FHL5	1700027G07Rik|ACT|FHL-5|dJ393D12.2	four and a half LIM domains 5	protein-coding
6044	chr9	116106004	116106289	+	0	NA	Intergenic	Intergenic	-3526	NM_001012361	114987	Hs.133331	NM_145241	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
2075	chr15	69833839	69834025	+	0	NA	Intergenic	AluSx|SINE|Alu	-20127	NR_026979	145837	Hs.410126	NR_026979		DRAIC	-	downregulated RNA in cancer, inhibitor of cell invasion and migration	ncRNA
4582	chr5	149317180	149317487	+	0	NA	intron (NM_000440, intron 1 of 21)	intron (NM_000440, intron 1 of 21)	-4793	NR_110534	644762	Hs.730366	NR_110534		LOC644762	-	mitochondrial fission factor pseudogene	pseudo
1981	chr14	106651010	106651168	+	0	NA	Intergenic	L1P4|LINE|L1	-93180	NR_033375	338004	Hs.569411	NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
3638	chr21	10839222	10839231	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	151717	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2081	chr15	69978836	69979000	+	0	NA	intron (NR_126437, intron 5 of 5)	FLAM_C|SINE|Alu	94379	NR_126437	104472713	Hs.430824	NR_126437	ENSG00000259641	PCAT29	-	prostate cancer associated transcript 29 (non-protein coding)	ncRNA
606	chr10	39109005	39109327	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	119439	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
4416	chr5	7629711	7630063	+	0	NA	intron (NM_020546, intron 4 of 24)	intron (NM_020546, intron 4 of 24)	221716	NM_001089584	134121	Hs.709979	NM_001089584	ENSG00000215217	C5orf49	-	chromosome 5 open reading frame 49	protein-coding
3559	chr20	32143077	32143212	+	0	NA	intron (NM_001032999, intron 1 of 10)	intron (NM_001032999, intron 1 of 10)	-7027	NM_001039709	9139	Hs.153934	NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 translocation partner 2	protein-coding
2522	chr17	68657396	68657883	+	0	NA	Intergenic	Intergenic	491963	NM_000891	3759	Hs.1547	NM_000891	ENSG00000123700	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	potassium voltage-gated channel subfamily J member 2	protein-coding
1855	chr14	77670972	77671087	+	0	NA	intron (NM_020431, intron 1 of 23)	intron (NM_020431, intron 1 of 23)	22927	NM_020431	57156	Hs.22452	NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|hsCSC1	transmembrane protein 63C	protein-coding
432	chr1	208376571	208377055	+	0	NA	intron (NM_025179, intron 3 of 31)	intron (NM_025179, intron 3 of 31)	40852	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
4235	chr4	74456001	74456149	+	0	NA	intron (NM_201431, intron 4 of 10)	intron (NM_201431, intron 4 of 10)	30212	NM_177532	166824	Hs.529677	NM_177532	ENSG00000169435	RASSF6	-	Ras association domain family member 6	protein-coding
5922	chr9	67320974	67320986	+	0	NA	intron (NR_136300, intron 3 of 3)	intron (NR_136300, intron 3 of 3)	30529	NR_136300	102724580	Hs.494013	NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene	pseudo
5349	chr7	91264015	91264078	+	0	NA	Intergenic	MamRep605|Unknown|Unknown	245988	NM_001301135	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF1	MTERF	mitochondrial transcription termination factor 1	protein-coding
5713	chr8	94372569	94372697	+	0	NA	intron (NR_033858, intron 10 of 10)	intron (NR_033858, intron 10 of 10)	-193554	NM_001242668	389676	Hs.386711	NM_001242668		C8orf87	-	chromosome 8 open reading frame 87	protein-coding
6220	chrUn_gl000225	14571	14791	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
5217	chr7	57554660	57554745	+	0	NA	Intergenic	AluYc|SINE|Alu	44819	NM_001159279	441234	Hs.533121	NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
2415	chr17	9274790	9274957	+	0	NA	intron (NM_004853, intron 7 of 7)	intron (NM_004853, intron 7 of 7)	-192438	NR_110828	101928266	Hs.639880	NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
708	chr10	92970607	92970844	+	0	NA	intron (NM_001257101, intron 1 of 9)	intron (NM_001257101, intron 1 of 9)	-9183	NM_001256549	84333	Hs.500512	NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
2583	chr18	18510891	18510895	+	0	NA	Intergenic	Intergenic	180919	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
2589	chr18	18515319	18515342	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	176482	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
3286	chr2	160373164	160373398	+	0	NA	intron (NM_001329857, intron 2 of 36)	intron (NM_001329857, intron 2 of 36)	-98524	NR_110588	643072	Hs.632541	NR_110587		LOC643072	-	uncharacterized LOC643072	ncRNA
4764	chr6	24920231	24920307	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-8871	NM_001346031	9750	Hs.559459	NM_014722	ENSG00000111913	FAM65B	C6orf32|DFNB104|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65 member B	protein-coding
2814	chr19	7179402	7179451	+	0	NA	intron (NM_001079817, intron 3 of 20)	MER21C|LTR|ERVL	109955	NM_001044388	79230	Hs.591380	NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
710	chr10	94479623	94480006	+	0	NA	Intergenic	Intergenic	30133	NM_002729	3087	Hs.118651	NM_002729	ENSG00000152804	HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
1656	chr14	30334438	30334839	+	0	NA	intron (NM_001330069, intron 1 of 18)	MSTD|LTR|ERVL-MaLR	62261	NM_002742	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding
856	chr11	48115319	48115491	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	-2929	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
5105	chr7	2197520	2197661	+	0	NA	intron (NM_001013836, intron 10 of 18)	intron (NM_001013836, intron 10 of 18)	74993	NM_003550	8379	Hs.654838	NM_003550	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient like 1	protein-coding
1664	chr14	31079981	31079985	+	0	NA	intron (NM_001308097, intron 11 of 13)	intron (NM_001308097, intron 11 of 13)	-11477	NM_001283033	23256	Hs.369168	NM_016106	ENSG00000092108	SCFD1	C14orf163|RA410|SLY1|SLY1P|STXBP1L2	sec1 family domain containing 1	protein-coding
112	chr1	43906085	43906127	+	0	NA	intron (NM_015284, intron 50 of 70)	intron (NM_015284, intron 50 of 70)	-8104	NR_106793	102465440		NR_106793	ENSG00000274975	MIR6735	hsa-mir-6735	microRNA 6735	ncRNA
5935	chr9	70010061	70010137	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	168716	NM_001126334	653427	Hs.714683	NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4-like 5	protein-coding
3211	chr2	109249557	109249594	+	0	NA	intron (NM_001193484, intron 1 of 9)	intron (NM_001193484, intron 1 of 9)	11873	NM_001193484	3987	Hs.597715	NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
191	chr1	82691874	82692071	+	0	NA	Intergenic	Intergenic	425890	NM_012302	23266	Hs.24212	NM_012302	ENSG00000117114	ADGRL2	CIRL2|CL2|LEC1|LPHH1|LPHN2	adhesion G protein-coupled receptor L2	protein-coding
4613	chr5	158498316	158498834	+	0	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	28195	NM_001324101	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
3612	chr21	10795609	10795928	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	195175	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
588	chr10	39081682	39081760	+	0	NA	Intergenic	Intergenic	91994	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
1684	chr14	37210687	37210945	+	0	NA	intron (NM_030631, intron 3 of 9)	intron (NM_030631, intron 3 of 9)	84043	NM_006194	5083	Hs.132576	NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding
5097	chr6	170138966	170139020	+	0	NA	Intergenic	L4|LINE|RTE	12686	NR_138070	6991	Hs.733746	NM_174910	ENSG00000184786	TCTE3	TCTEX1D3	t-complex-associated-testis-expressed 3	protein-coding
756	chr11	10401614	10401754	+	0	NA	intron (NR_103765, intron 2 of 3)	MamRep605|Unknown|Unknown	-70184	NM_001172431	272	Hs.501890	NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
262	chr1	120379447	120379629	+	0	NA	intron (NM_001047980, intron 6 of 7)	AluY|SINE|Alu	7965	NM_001047980	343505		NM_001047980		NBPF7	-	neuroblastoma breakpoint family member 7	protein-coding
1944	chr14	96207964	96208090	+	0	NA	Intergenic	Intergenic	-27494	NR_049726	8115	Hs.2484	NM_021966	ENSG00000100721	TCL1A	TCL1	T-cell leukemia/lymphoma 1A	protein-coding
5165	chr7	28612081	28612199	+	0	NA	intron (NM_182899, intron 4 of 9)	intron (NM_182899, intron 4 of 9)	-113458	NM_001011666	9586	Hs.437075	NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5	cAMP responsive element binding protein 5	protein-coding
4422	chr5	8383661	8383779	+	0	NA	intron (NR_039984, intron 3 of 5)	intron (NR_039984, intron 3 of 5)	73957	NR_039984	729506	Hs.566412	NR_039984	ENSG00000245729	LOC729506	-	uncharacterized LOC729506	ncRNA
6257	chrX	11498517	11498710	+	0	NA	intron (NR_109776, intron 1 of 14)	L1MB8|LINE|L1	-52708	NM_001287242	395	Hs.435291	NM_001174	ENSG00000047648	ARHGAP6	RHOGAP6|RHOGAPX-1	Rho GTPase activating protein 6	protein-coding
2590	chr18	18515343	18520343	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	173969	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
542	chr10	38776722	38776803	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	59688	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
6109	chrUn_gl000212	40525	41275	+	0	NA	intron (NR_027278, intron 1 of 7)	HSATI|Satellite|Satellite	16851	NR_027278	26080	Hs.448583	NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
3750	chr22	18879891	18879938	+	0	NA	intron (NR_136571, intron 1 of 11)	AluSc8|SINE|Alu	2030	NR_136571	100996432	Hs.631668	NR_136571		LINC01663	-	long intergenic non-protein coding RNA 1663	ncRNA
3114	chr2	89866639	89866986	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	754928	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
5337	chr7	83921576	83921684	+	0	NA	Intergenic	Intergenic	-97413	NM_006080	10371	Hs.252451	NM_006080	ENSG00000075213	SEMA3A	COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1	semaphorin 3A	protein-coding
4649	chr6	6826748	6826878	+	0	NA	Intergenic	Intergenic	-203754	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
2099	chr15	74515855	74515994	+	0	NA	Intergenic	Intergenic	-12706	NM_025055	80125	Hs.383206	NM_025055	ENSG00000140481	CCDC33	CT61|HP11097	coiled-coil domain containing 33	protein-coding
2476	chr17	45270345	45270377	+	0	NA	Intergenic	Intergenic	-3683	NM_001256	996	Hs.463295	NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
2988	chr2	40478227	40478349	+	0	NA	intron (NM_021097, intron 1 of 9)	intron (NM_021097, intron 1 of 9)	179156	NM_001112801	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding
170	chr1	67008600	67008862	+	0	NA	intron (NM_032291, intron 1 of 24)	intron (NM_032291, intron 1 of 24)	9092	NM_032291	84251	Hs.132121	NM_032291	ENSG00000118473	SGIP1	-	SH3 domain GRB2 like endophilin interacting protein 1	protein-coding
4873	chr6	71548464	71548713	+	0	NA	intron (NM_001281440, intron 7 of 10)	L2a|LINE|L2	118200	NM_080742	135152	Hs.713609	NM_080742	ENSG00000112309	B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding
1921	chr14	89792762	89792766	+	0	NA	intron (NM_001085471, intron 3 of 6)	intron (NM_001085471, intron 3 of 6)	90690	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
6181	chrUn_gl000216	66533	66703	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
3217	chr2	109816309	109816315	+	0	NA	intron (NM_001099289, intron 1 of 9)	intron (NM_001099289, intron 1 of 9)	-58268	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
5745	chr8	102407672	102407963	+	0	NA	Intergenic	Intergenic	26696	NR_002182	83955	Hs.567608	NM_032031	ENSG00000228224	NACAP1	FKSG17	nascent polypeptide associated complex alpha subunit pseudogene 1	pseudo
26	chr1	8499330	8499751	+	0	NA	intron (NM_012102, intron 12 of 23)	intron (NM_012102, intron 12 of 23)	14835	NR_125999	102724552	Hs.568612	NR_125999		LOC102724552	-	uncharacterized LOC102724552	ncRNA
4923	chr6	90687558	90687931	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	83556	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
2116	chr15	92008835	92009092	+	0	NA	intron (NR_110106, intron 1 of 3)	intron (NR_110106, intron 1 of 3)	2394	NR_110106	101926928	Hs.638788	NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
2250	chr16	33973932	33974149	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-11537	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
526	chr10	14690596	14690729	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-44245	NM_001282696	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
1901	chr14	86340024	86340027	+	0	NA	Intergenic	Intergenic	-60997	NR_110155	101928767	Hs.536380	NR_110155		LOC101928767	-	uncharacterized LOC101928767	ncRNA
3500	chr20	20193102	20193367	+	0	NA	intron (NM_015585, intron 17 of 26)	intron (NM_015585, intron 17 of 26)	-155531	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
6218	chrUn_gl000225	13792	13825	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
359	chr1	180555748	180555902	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	27715	NR_125716	148756		NR_125716	ENSG00000236719	OVAAL	LINC01131|OVAL	ovarian adenocarcinoma amplified long non-coding RNA	ncRNA
1229	chr12	79395542	79395769	+	0	NA	intron (NM_001291901, intron 2 of 9)	intron (NM_001291901, intron 2 of 9)	-43778	NM_001135806	6857	Hs.310545	NM_005639	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin 1	protein-coding
2614	chr18	25625163	25625246	+	0	NA	intron (NM_001792, intron 2 of 15)	intron (NM_001792, intron 2 of 15)	-8655	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
2608	chr18	25292844	25293079	+	0	NA	Intergenic	Intergenic	323588	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
1001	chr11	113187921	113188128	+	0	NA	intron (NM_001318533, intron 2 of 21)	intron (NM_001318533, intron 2 of 21)	2773	NM_017868	54970	Hs.288772	NM_017868	ENSG00000149292	TTC12	TPARM	tetratricopeptide repeat domain 12	protein-coding
3694	chr21	38380911	38381115	+	0	NA	intron (NM_001317777, intron 2 of 2)	AluSx1|SINE|Alu	2150	NM_018962	53820	Hs.254560	NM_018962	ENSG00000183145	RIPPLY3	DSCR6	ripply transcriptional repressor 3	protein-coding
232	chr1	107767136	107767264	+	0	NA	intron (NM_001330665, intron 2 of 6)	intron (NM_001330665, intron 2 of 6)	76509	NM_001113228	22854	Hs.133046	NM_014917	ENSG00000162631	NTNG1	Lmnt1	netrin G1	protein-coding
6207	chrUn_gl000216	155061	155396	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
3458	chr20	4856730	4856836	+	0	NA	intron (NM_203327, intron 9 of 16)	intron (NM_203327, intron 9 of 16)	-52492	NM_014737	9770	Hs.631504	NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
3054	chr2	66218833	66219515	+	0	NA	Intergenic	Intergenic	366286	NR_039938	100616464		NR_039938	ENSG00000264525	MIR4778	-	microRNA 4778	ncRNA
6008	chr9	97205558	97205898	+	0	NA	intron (NM_032558, intron 5 of 11)	intron (NM_032558, intron 5 of 11)	68895	NM_032558	84641	Hs.555996	NM_032558	ENSG00000148110	MFSD14B	HIATL1	major facilitator superfamily domain containing 14B	protein-coding
1182	chr12	42313347	42313423	+	0	NA	Intergenic	Intergenic	155394	NR_135040	101927038	Hs.98588	NR_135040	ENSG00000257784	LOC101927038	-	uncharacterized LOC101927038	ncRNA
225	chr1	105534336	105534486	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	627146	NR_125954	101928476	Hs.563856	NR_125954	ENSG00000230768	LINC01676	-	long intergenic non-protein coding RNA 1676	ncRNA
1447	chr13	32563408	32563641	+	0	NA	Intergenic	Intergenic	-41913	NM_023037	10129	Hs.507669	NM_023037	ENSG00000073910	FRY	13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1	FRY microtubule binding protein	protein-coding
142	chr1	58143789	58143835	+	0	NA	intron (NM_021080, intron 2 of 16)	intron (NM_021080, intron 2 of 16)	-182403	NR_104363	101926890	Hs.662207	NR_104362	ENSG00000226759	DAB1-AS1	-	DAB1 antisense RNA 1	ncRNA
207	chr1	87222032	87222166	+	0	NA	Intergenic	Intergenic	51846	NM_001206653	51100	Hs.136309	NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like endophilin B1	protein-coding
1510	chr13	89479301	89479661	+	0	NA	Intergenic	Intergenic	200374	NR_047490	100861553	Hs.560132	NR_047490		LINC00560	-	long intergenic non-protein coding RNA 560	ncRNA
5392	chr7	111597859	111598298	+	0	NA	intron (NM_014705, intron 8 of 51)	intron (NM_014705, intron 8 of 51)	149517	NR_103806	100506413	Hs.677513	NR_103806	ENSG00000225572	DOCK4-AS1	-	DOCK4 antisense RNA 1	ncRNA
48	chr1	16841067	16841333	+	0	NA	Intergenic	Charlie4a|DNA|hAT-Charlie	20947	NR_135764	100132147	Hs.645945	NR_135764	ENSG00000233421	LINC01783	-	long intergenic non-protein coding RNA 1783	ncRNA
4491	chr5	77312625	77312876	+	0	NA	intron (NM_003664, intron 25 of 26)	intron (NM_003664, intron 25 of 26)	58679	NR_105013	101929154	Hs.252895	NR_105012		LOC101929154	-	uncharacterized LOC101929154	ncRNA
3641	chr21	10843391	10843537	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	147479	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
3585	chr21	10085026	10085130	+	0	NA	Intergenic	(GAATG)n|Simple_repeat|Simple_repeat	-116484	NR_038328	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
5795	chr8	125699725	125699926	+	0	NA	intron (NM_014751, intron 3 of 13)	intron (NM_014751, intron 3 of 13)	40923	NM_001282971	9788	Hs.336994	NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS1, I-BAR domain containing	protein-coding
3170	chr2	92284228	92284602	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	155256	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
5288	chr7	68697497	68698112	+	0	NA	Intergenic	Intergenic	364677	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
1988	chr15	29500518	29500755	+	0	NA	intron (NM_015307, intron 3 of 10)	intron (NM_015307, intron 3 of 10)	61384	NM_138704	56160	Hs.94011	NM_138704	ENSG00000185115	NSMCE3	HCA4|LICS|MAGEG1|MAGEL3|NDNL2|NSE3	NSE3 homolog, SMC5-SMC6 complex component	protein-coding
3923	chr3	117347734	117347933	+	0	NA	Intergenic	Intergenic	707555	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA
4128	chr4	49093241	49093262	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	104592	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3730	chr22	16850055	16850314	+	0	NA	Intergenic	HSATII|Satellite|Satellite	223516	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
3135	chr2	89879994	89880055	+	0	NA	Intergenic	Intergenic	768140	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
4356	chr4	157736735	157736776	+	0	NA	intron (NM_016205, intron 2 of 5)	intron (NM_016205, intron 2 of 5)	155791	NM_016205	56034	Hs.570855	NM_016205	ENSG00000145431	PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
3665	chr21	34814324	34814589	+	0	NA	intron (NR_040016, intron 7 of 8)	intron (NR_040016, intron 7 of 8)	37860	NR_040016	757	Hs.433668	NM_006134	ENSG00000142188	TMEM50B	C21orf4|HCVP7TP3	transmembrane protein 50B	protein-coding
5981	chr9	92801018	92801296	+	0	NA	intron (NR_038882, intron 1 of 3)	intron (NR_038882, intron 1 of 3)	2624	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
4343	chr4	151287971	151288141	+	0	NA	intron (NM_006726, intron 48 of 57)	intron (NM_006726, intron 48 of 57)	-215021	NM_006439	10586	Hs.584852	NM_006439	ENSG00000181541	MAB21L2	MCOPS14	mab-21 like 2	protein-coding
4376	chr4	185653252	185653394	+	0	NA	intron (NM_024629, intron 1 of 12)	MER112|DNA|hAT-Charlie	1963	NM_024629	79682	Hs.575032	NM_024629	ENSG00000151725	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
4243	chr4	74989217	74989408	+	0	NA	Intergenic	Intergenic	-24315	NM_002089	2920	Hs.75765	NM_002089	ENSG00000081041	CXCL2	CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2	C-X-C motif chemokine ligand 2	protein-coding
659	chr10	42818281	42818294	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	45206	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
2774	chr18	60931944	60932139	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	54572	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding
2763	chr18	56763387	56764173	+	0	NA	Intergenic	Intergenic	-43309	NM_033280	90701	Hs.45107	NM_033280	ENSG00000166562	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C, signal peptidase complex subunit	protein-coding
6017	chr9	99997381	99997483	+	0	NA	intron (NR_136286, intron 1 of 17)	intron (NR_136286, intron 1 of 17)	-3276	NR_036527	57653	Hs.435629	NR_036527	ENSG00000255036	LOC100499484-C9ORF174	-	LOC100499484-C9orf174 readthrough	ncRNA
1141	chr12	32229778	32229975	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-30309	NM_001003398	636	Hs.505202	NM_001714	ENSG00000151746	BICD1	BICD	BICD cargo adaptor 1	protein-coding
984	chr11	111162037	111162169	+	0	NA	Intergenic	L2b|LINE|L2	-7168	NM_001271458	120376	Hs.31409	NM_001136105	ENSG00000214290	COLCA2	C11orf93|CASC13|LOH11CR1G	colorectal cancer associated 2	protein-coding
1155	chr12	34841673	34841723	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	666482	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
3372	chr2	211546273	211546323	+	0	NA	Intergenic	Intergenic	64003	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
1485	chr13	50940763	50941286	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	160561	NR_125753	103689915	Hs.722230	NR_125753	ENSG00000229323	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
788	chr11	15736196	15737271	+	0	NA	Intergenic	Intergenic	71302	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
128	chr1	50741390	50741788	+	0	NA	Intergenic	Intergenic	147530	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
4797	chr6	43894373	43894539	+	0	NA	intron (NR_024478, intron 1 of 1)	intron (NR_024478, intron 1 of 1)	35691	NR_024478	100132354	Hs.376232	NR_024478		LINC01512	HI-LNC77	long intergenic non-protein coding RNA 1512	ncRNA
5238	chr7	61742602	61742722	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1021772	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
6335	chrX	131727681	131727682	+	0	NA	Intergenic	Intergenic	-73989	NR_046691	100874102	Hs.619341	NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
4115	chr4	25564733	25565020	+	0	NA	intron (NR_134641, intron 1 of 3)	AluSz|SINE|Alu	6092	NR_134641	101929161	Hs.125638	NR_134641		LOC101929161	-	uncharacterized LOC101929161	ncRNA
1313	chr12	106100251	106100589	+	0	NA	promoter-TSS (NR_110111)	promoter-TSS (NR_110111)	-132	NR_110110	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
278	chr1	121357717	121358254	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	97075	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
1617	chr13	112767783	112768021	+	0	NA	Intergenic	L2c|LINE|L2	6469	NR_120394	100505996	Hs.654853	NR_120392	ENSG00000224243	LINC00403	-	long intergenic non-protein coding RNA 403	ncRNA
6048	chr9	119049007	119049077	+	0	NA	intron (NM_002581, intron 9 of 21)	intron (NM_002581, intron 9 of 21)	113843	NR_103711	493913	Hs.728832	NR_103711	ENSG00000256040	PAPPA-AS1	DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105	PAPPA antisense RNA 1	ncRNA
3521	chr20	29804491	29804507	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-40968	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
490	chr1	226911411	226911811	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	15265	NM_002221	3707	Hs.528087	NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
1843	chr14	76952494	76952667	+	0	NA	intron (NM_004452, intron 7 of 10)	intron (NM_004452, intron 7 of 10)	114890	NM_004452	2103	Hs.435845	NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen related receptor beta	protein-coding
5809	chr8	140807742	140807872	+	0	NA	intron (NM_031466, intron 21 of 22)	intron (NM_031466, intron 21 of 22)	-92508	NM_001282534	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
5760	chr8	109054902	109055168	+	0	NA	intron (NM_178565, intron 2 of 5)	intron (NM_178565, intron 2 of 5)	39132	NM_001317942	340419	Hs.444834	NM_178565	ENSG00000147655	RSPO2	CRISTIN2	R-spondin 2	protein-coding
2626	chr18	31383268	31383498	+	0	NA	Intergenic	Intergenic	224842	NM_030632	80816	Hs.464876	NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	additional sex combs like 3, transcriptional regulator	protein-coding
1112	chr12	12162152	12162442	+	0	NA	Intergenic	Intergenic	-61581	NM_138723	79370	Hs.210343	NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
6502	chrY	58980895	58983451	+	0	NA	Intergenic	AluSz6|SINE|Alu	-118230	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
1294	chr12	103767063	103767504	+	0	NA	intron (NM_001099336, intron 3 of 5)	intron (NM_001099336, intron 3 of 5)	122505	NR_103526	374470	Hs.534649	NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
461	chr1	218478143	218478330	+	0	NA	intron (NM_016052, intron 2 of 4)	intron (NM_016052, intron 2 of 4)	19607	NM_016052	51018	Hs.660109	NM_016052	ENSG00000067533	RRP15	CGI-115|KIAA0507	ribosomal RNA processing 15 homolog	protein-coding
2712	chr18	45748619	45748865	+	0	NA	intron (NM_001318841, intron 2 of 4)	intron (NM_001318841, intron 2 of 4)	-85062	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
1562	chr13	101297197	101297548	+	0	NA	intron (NM_032813, intron 6 of 18)	intron (NM_032813, intron 6 of 18)	29817	NM_032813	84899	Hs.190983	NM_032813	ENSG00000125247	TMTC4	-	transmembrane and tetratricopeptide repeat containing 4	protein-coding
1426	chr13	22237672	22237830	+	0	NA	Intergenic	L1MCa|LINE|L1	-7464	NM_002010	2254	Hs.111	NM_002010	ENSG00000102678	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
3451	chr20	2226727	2227135	+	0	NA	Intergenic	MER68-int|LTR|ERVL	39357	NM_001287682	388780	Hs.132163	NM_001287682		LOC388780	-	uncharacterized LOC388780	protein-coding
6345	chrX	150993879	150994001	+	0	NA	Intergenic	Intergenic	85615	NR_136578	105373368	Hs.256904	NR_136578		LOC105373368	-	uncharacterized LOC105373368	ncRNA
4640	chr6	3919582	3919828	+	0	NA	Intergenic	MER50|LTR|ERV1	70105	NM_012135	26240	Hs.140944	NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50 member B	protein-coding
1358	chr12	116770803	116770921	+	0	NA	Intergenic	MamRep434|DNA|TcMar-Tigger	-55871	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13 like	protein-coding
782	chr11	13904558	13904815	+	0	NA	Intergenic	MIRc|SINE|MIR	41724	NR_135052	101928132	Hs.568970	NR_135052	ENSG00000254438	LOC101928132	-	uncharacterized LOC101928132	ncRNA
5225	chr7	61079879	61079911	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1684539	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
3647	chr21	10845197	10845362	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	145664	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2281	chr16	46443935	46443946	+	0	NA	Intergenic	HSATII|Satellite|Satellite	159069	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
1557	chr13	101142528	101142840	+	0	NA	intron (NM_001178004, intron 21 of 22)	intron (NM_001178004, intron 21 of 22)	-9415	NR_047686	100885777	Hs.662554	NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
1486	chr13	50941287	50941482	+	0	NA	intron (NR_109974, intron 2 of 6)	MLT1C|LTR|ERVL-MaLR	160201	NR_125753	103689915	Hs.722230	NR_125753	ENSG00000229323	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
425	chr1	207232033	207232385	+	0	NA	intron (NM_001018053, intron 2 of 14)	intron (NM_001018053, intron 2 of 14)	5589	NM_006212	5208	Hs.282702	NM_006212	ENSG00000123836	PFKFB2	PFK-2/FBPase-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding
4987	chr6	107475975	107475999	+	0	NA	intron (NM_020381, intron 7 of 7)	intron (NM_020381, intron 7 of 7)	-40351	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
2056	chr15	60864821	60865069	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	19762	NM_134262	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
5223	chr7	61079618	61079627	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1684812	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
3607	chr21	10764971	10765127	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	225894	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2876	chr2	1128115	1128373	+	0	NA	intron (NM_018968, intron 4 of 16)	intron (NM_018968, intron 4 of 16)	-181166	NR_136151	101060391	Hs.120377	NR_136151		LOC101060391	-	uncharacterized LOC101060391	ncRNA
3648	chr21	10845363	10845393	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	145565	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
3428	chr2	234898198	234898417	+	0	NA	intron (NM_024080, intron 21 of 25)	intron (NM_024080, intron 21 of 25)	-61039	NM_006944	6694	Hs.444488	NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
781	chr11	13904409	13904557	+	0	NA	Intergenic	Intergenic	41927	NR_135052	101928132	Hs.568970	NR_135052	ENSG00000254438	LOC101928132	-	uncharacterized LOC101928132	ncRNA
3015	chr2	50353884	50354396	+	0	NA	intron (NM_001135659, intron 19 of 23)	intron (NM_001135659, intron 19 of 23)	-152799	NM_001320157	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
6490	chrY	58972779	58972779	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	-127624	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
5589	chr8	29705779	29705845	+	0	NA	Intergenic	Intergenic	-19792	NR_125817	101929470	Hs.204721	NR_125817	ENSG00000248964	LOC101929470	-	uncharacterized LOC101929470	ncRNA
1950	chr14	96337884	96337914	+	0	NA	Intergenic	Intergenic	-4830	NR_132399	100507043	Hs.455955	NR_038861	ENSG00000250366	TUNAR	HI-LNC78|LINC00617|TUNA	TCL1 upstream neural differentiation-associated RNA	ncRNA
2782	chr18	64801178	64801240	+	0	NA	Intergenic	Intergenic	52388	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA
5748	chr8	102961722	102962000	+	0	NA	intron (NM_001040624, intron 3 of 7)	intron (NM_001040624, intron 3 of 7)	-34799	NR_126152	104054148	Hs.683917	NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
5720	chr8	94457737	94457773	+	0	NA	intron (NR_033858, intron 7 of 10)	intron (NR_033858, intron 7 of 10)	254906	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	ncRNA
5044	chr6	138806186	138806316	+	0	NA	intron (NM_001144060, intron 2 of 7)	intron (NM_001144060, intron 2 of 7)	14328	NM_001144060	57224	Hs.652741	NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
2037	chr15	58535684	58535924	+	0	NA	Intergenic	MIRb|SINE|MIR	105409	NM_001320635	366	Hs.104624	NM_020980	ENSG00000103569	AQP9	AQP-9|HsT17287|SSC1|T17287	aquaporin 9	protein-coding
5578	chr8	28570120	28570326	+	0	NA	intron (NR_073468, intron 1 of 4)	intron (NR_073468, intron 1 of 4)	11233	NM_001440	2137	Hs.491354	NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
5327	chr7	79682403	79682702	+	0	NA	Intergenic	Intergenic	-81588	NM_002069	2770	Hs.134587	NM_002069	ENSG00000127955	GNAI1	Gi	G protein subunit alpha i1	protein-coding
532	chr10	24602512	24602675	+	0	NA	intron (NM_001098500, intron 3 of 18)	intron (NM_001098500, intron 3 of 18)	37979	NR_030334	693188		NR_030334	ENSG00000207930	MIR603	MIRN603|hsa-mir-603	microRNA 603	ncRNA
1193	chr12	48415655	48415773	+	0	NA	Intergenic	Intergenic	-17429	NM_033150	1280	Hs.408182	NM_001844	ENSG00000139219	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen type II alpha 1 chain	protein-coding
3963	chr3	130530834	130531094	+	0	NA	Intergenic	Intergenic	-38405	NM_001199182	27032	Hs.584884	NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
2455	chr17	30342903	30342949	+	0	NA	intron (NM_001321350, intron 1 of 14)	intron (NM_001321350, intron 1 of 14)	-5229	NM_052888	114659	Hs.514071	NM_052888	ENSG00000185158	LRRC37B	LRRC37	leucine rich repeat containing 37B	protein-coding
55	chr1	27998791	27998962	+	0	NA	promoter-TSS (NM_022873)	promoter-TSS (NM_022873)	-152	NM_002038	2537	Hs.523847	NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	interferon alpha inducible protein 6	protein-coding
3592	chr21	10086165	10086208	+	0	NA	Intergenic	(GAATG)n|Simple_repeat|Simple_repeat	-117592	NR_038328	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
1890	chr14	85321354	85321870	+	0	NA	Intergenic	Intergenic	-532007	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
6281	chrX	58561816	58561822	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-624752	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger, X-linked, duplicated A	protein-coding
6134	chrUn_gl000216	8260	9224	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
1681	chr14	36971368	36971793	+	0	NA	intron (NR_138596, intron 1 of 4)	intron (NR_138596, intron 1 of 4)	11410	NR_138598	253970	Hs.509165	NM_001101341	ENSG00000229415	SFTA3	NANCI|SFTPH|SP-H	surfactant associated 3	protein-coding
872	chr11	51572639	51572886	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	57480	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
6434	chrY	13842624	13842850	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	690652	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1146	chr12	32536531	32536608	+	0	NA	Intergenic	Intergenic	-102337	NM_001330374	121512	Hs.117835	NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
395	chr1	202933842	202934019	+	0	NA	intron (NM_016243, intron 5 of 8)	intron (NM_016243, intron 5 of 8)	2474	NM_016243	51706	Hs.334832	NM_016243	ENSG00000159348	CYB5R1	B5R.1|B5R1|B5R2|NQO3A2|humb5R2	cytochrome b5 reductase 1	protein-coding
89	chr1	38617089	38617458	+	0	NA	Intergenic	LTR16A|LTR|ERVL	62370	NR_037432	100500801		NR_037432	ENSG00000265596	MIR3659	mir-3659	microRNA 3659	ncRNA
988	chr11	111181061	111181453	+	0	NA	Intergenic	Intergenic	-5484	NM_001302644	399948	Hs.729225	NM_207429		COLCA1	C11orf92|CASC12|LOH11CR1F	colorectal cancer associated 1	protein-coding
5848	chr9	8085672	8086078	+	0	NA	Intergenic	Intergenic	-286069	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
4342	chr4	151287835	151287970	+	0	NA	intron (NM_006726, intron 48 of 57)	intron (NM_006726, intron 48 of 57)	-215175	NM_006439	10586	Hs.584852	NM_006439	ENSG00000181541	MAB21L2	MCOPS14	mab-21 like 2	protein-coding
3584	chr21	10085008	10085025	+	0	NA	Intergenic	(GAATG)n|Simple_repeat|Simple_repeat	-116422	NR_038328	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
2295	chr16	51768213	51768559	+	0	NA	Intergenic	Intergenic	-28044	NR_110916	101927364	Hs.133120	NR_110916	ENSG00000260057	LINC01571	-	long intergenic non-protein coding RNA 1571	ncRNA
1550	chr13	99234522	99234687	+	0	NA	Intergenic	Intergenic	-5199	NM_001032296	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
1454	chr13	36073035	36073199	+	0	NA	intron (NM_001204197, intron 1 of 17)	intron (NM_001204197, intron 1 of 17)	22231	NM_001204197	26960	Hs.491172	NM_015678	ENSG00000172915	NBEA	BCL8B|LYST2	neurobeachin	protein-coding
2533	chr17	75733612	75733847	+	0	NA	Intergenic	MER74A|LTR|ERVL	-9088	NR_104134	100132174	Hs.640110	NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
3960	chr3	130073712	130073784	+	0	NA	intron (NM_153264, intron 1 of 39)	MER33|DNA|hAT-Charlie	9389	NR_022012	256076	Hs.205403	NM_153264	ENSG00000172752	COL6A5	COL29A1|VWA4	collagen type VI alpha 5 chain	protein-coding
5117	chr7	4752159	4752580	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	30439	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
4434	chr5	26553384	26553513	+	0	NA	Intergenic	Intergenic	485241	NM_016279	1007	Hs.272212	NM_016279	ENSG00000113100	CDH9	-	cadherin 9	protein-coding
1584	chr13	107863358	107863414	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	320210	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
1675	chr14	36843678	36843797	+	0	NA	Intergenic	Intergenic	-53855	NM_001308110	51562	Hs.368647	NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
649	chr10	42815362	42815439	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	48093	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
5527	chr7_gl000195_random	30330	30504	+	0	NA	Intergenic	Intergenic	35623	NM_001322975	102723360	Hs.743984	NM_001322975	ENSG00000277991	LOC102723360	-	uncharacterized LOC102723360	protein-coding
6038	chr9	113469697	113470052	+	0	NA	intron (NM_005592, intron 5 of 13)	intron (NM_005592, intron 5 of 13)	38823	NM_001166280	4593	Hs.521653	NM_005592	ENSG00000030304	MUSK	CMS9|FADS	muscle associated receptor tyrosine kinase	protein-coding
3903	chr3	108107643	108107921	+	0	NA	intron (NM_014981, intron 39 of 41)	intron (NM_014981, intron 39 of 41)	77150	NM_001282557	11148	Hs.225968	NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HERV-H LTR-associating 2	protein-coding
2150	chr16	1940278	1940487	+	0	NA	Intergenic	Intergenic	-6150	NR_033914	64735	Hs.662737	NR_033914	ENSG00000281219	LINC00254	C16orf32|NCRNA00254	long intergenic non-protein coding RNA 254	ncRNA
1318	chr12	106208514	106208754	+	0	NA	Intergenic	Intergenic	108082	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
642	chr10	42794736	42794774	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	68738	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
5965	chr9	84280259	84280437	+	0	NA	intron (NM_005077, intron 4 of 19)	intron (NM_005077, intron 4 of 19)	24102	NM_001303104	7088	Hs.197320	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	transducin like enhancer of split 1	protein-coding
1764	chr14	61724710	61724968	+	0	NA	Intergenic	Intergenic	23691	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
3348	chr2	205130745	205130824	+	0	NA	Intergenic	Intergenic	-279732	NM_152526	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
1908	chr14	89030373	89030938	+	0	NA	intron (NM_001326300, intron 2 of 15)	MIRb|SINE|MIR	964	NM_001326316	79882	Hs.684046	NM_024824	ENSG00000100722	ZC3H14	MRT56|MSUT-2|NY-REN-37|SUT2|UKp68	zinc finger CCCH-type containing 14	protein-coding
6480	chrY	28784355	28784507	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	909794	NR_002176	474148	Hs.511777	NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis-specific transcript, Y-linked 3B (non-protein coding)	ncRNA
4291	chr4	113973770	113974029	+	0	NA	intron (NM_001148, intron 1 of 45)	MER90a|LTR|ERV1	3114	NM_001148	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding
6290	chrX	61682592	61682967	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	888439	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
2792	chr18	67326614	67326933	+	0	NA	intron (NM_152721, intron 3 of 7)	Eulor5B|DNA?|DNA?	189606	NR_134579	105372179	Hs.666269	NR_134579	ENSG00000264845	LOC105372179	-	uncharacterized LOC105372179	ncRNA
1718	chr14	51849555	51850415	+	0	NA	Intergenic	MIRb|SINE|MIR	49874	NR_038358	283553	Hs.325752	NR_038358	ENSG00000258479	LINC00640	-	long intergenic non-protein coding RNA 640	ncRNA
1098	chr12	5486062	5486339	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-55080	NM_001102654	4908	Hs.99171	NM_002527	ENSG00000185652	NTF3	HDNF|NGF-2|NGF2|NT-3|NT3	neurotrophin 3	protein-coding
3003	chr2	46119519	46119682	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	240557	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
4849	chr6	61911029	61911225	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-372881	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
6242	chrUn_gl000228	117929	118878	+	0	NA	intron (NR_137167, intron 2 of 5)	BSR/Beta|Satellite|Satellite	5798	NM_001306068	100288687	Hs.728749	NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
5018	chr6	111873717	111873777	+	0	NA	intron (NR_034109, intron 1 of 1)	intron (NR_034109, intron 1 of 1)	14816	NM_001164283	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
2665	chr18	35877344	35877625	+	0	NA	Intergenic	Intergenic	640386	NR_036202	100422857		NR_036202	ENSG00000266530	MIR4318	-	microRNA 4318	ncRNA
4609	chr5	158228248	158228497	+	0	NA	intron (NM_001324107, intron 8 of 15)	intron (NM_001324107, intron 8 of 15)	298398	NM_001324101	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
5592	chr8	33937112	33937166	+	0	NA	Intergenic	Intergenic	-479515	NM_024025	78986	Hs.8719	NM_024025	ENSG00000133878	DUSP26	DSP-4|DUSP24|LDP-4|MKP-8|MKP8|NATA1|NEAP|SKRP3	dual specificity phosphatase 26	protein-coding
184	chr1	75759274	75759501	+	0	NA	intron (NM_001320285, intron 7 of 25)	intron (NM_001320285, intron 7 of 25)	158820	NM_001256114	431707	Hs.403934	NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
776	chr11	13156946	13157153	+	0	NA	Intergenic	Intergenic	126079	NM_001080521	644943	Hs.134650	NM_001080521	ENSG00000189431	RASSF10	-	Ras association domain family member 10	protein-coding
3738	chr22	16852058	16852062	+	0	NA	Intergenic	HSATII|Satellite|Satellite	221640	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
1570	chr13	102528386	102528762	+	0	NA	intron (NM_001321945, intron 2 of 5)	intron (NM_001321945, intron 2 of 5)	40421	NM_004115	2259	Hs.508616	NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
6381	chrY	13677388	13677423	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	855984	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
2673	chr18	37779167	37779737	+	0	NA	Intergenic	Intergenic	133202	NR_110791	101927900	Hs.385522	NR_110791	ENSG00000261715	LINC01477	-	long intergenic non-protein coding RNA 1477	ncRNA
5625	chr8	59745228	59745865	+	0	NA	intron (NM_014729, intron 5 of 8)	intron (NM_014729, intron 5 of 8)	-173142	NM_003580	8439	Hs.372000	NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
1269	chr12	98321583	98322160	+	0	NA	Intergenic	LTR16E2|LTR|ERVL	11028	NR_039716	100616287		NR_039716	ENSG00000265861	MIR4495	-	microRNA 4495	ncRNA
181	chr1	75430489	75430692	+	0	NA	Intergenic	Intergenic	-163529	NM_001001933	431707	Hs.403934	NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
412	chr1	204415549	204415944	+	0	NA	intron (NM_002646, intron 16 of 33)	intron (NM_002646, intron 16 of 33)	-34801	NM_032833	84919	Hs.304376	NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
6239	chrUn_gl000228	116198	116427	+	0	NA	intron (NR_137167, intron 2 of 5)	BSR/Beta|Satellite|Satellite	3707	NM_001306068	100288687	Hs.728749	NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
1671	chr14	36815251	36815267	+	0	NA	Intergenic	Intergenic	-25377	NM_001308110	51562	Hs.368647	NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
4242	chr4	74988819	74989216	+	0	NA	Intergenic	Intergenic	-24020	NM_002089	2920	Hs.75765	NM_002089	ENSG00000081041	CXCL2	CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2	C-X-C motif chemokine ligand 2	protein-coding
830	chr11	22771080	22771228	+	0	NA	intron (NM_001143830, intron 6 of 7)	intron (NM_001143830, intron 6 of 7)	74835	NM_005256	2620	Hs.711297	NM_005256	ENSG00000148935	GAS2	-	growth arrest specific 2	protein-coding
4933	chr6	90896401	90896529	+	0	NA	intron (NM_021813, intron 4 of 8)	MIRb|SINE|MIR	110162	NM_021813	60468	Hs.269764	NM_021813	ENSG00000112182	BACH2	BTBD25	BTB domain and CNC homolog 2	protein-coding
3721	chr21	41426749	41426848	+	0	NA	intron (NM_001389, intron 29 of 32)	MIR|SINE|MIR	157560	NR_039917	100616148		NR_039917	ENSG00000263973	MIR4760	-	microRNA 4760	ncRNA
2893	chr2	3657200	3657447	+	0	NA	intron (NM_001255989, intron 1 of 3)	AluSq2|SINE|Alu	3681	NM_001255989	78989	Hs.32603	NM_024027	ENSG00000118004	COLEC11	3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin subfamily member 11	protein-coding
2062	chr15	64889123	64889366	+	0	NA	intron (NM_015042, intron 1 of 8)	intron (NM_015042, intron 1 of 8)	97625	NM_015042	23060	Hs.595451	NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
5204	chr7	51205508	51205827	+	0	NA	intron (NM_001287438, intron 5 of 7)	intron (NM_001287438, intron 5 of 7)	178891	NM_015198	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
3935	chr3	123937160	123937462	+	0	NA	intron (NM_001024660, intron 1 of 59)	intron (NM_001024660, intron 1 of 59)	85535	NR_049798	100847021		NR_049798	ENSG00000266383	MIR5002	-	microRNA 5002	ncRNA
1101	chr12	6480200	6480682	+	0	NA	intron (NM_001159576, intron 1 of 11)	intron (NM_001159576, intron 1 of 11)	3949	NM_001159576	6337	Hs.591047	NM_001038	ENSG00000111319	SCNN1A	BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1	sodium channel epithelial 1 alpha subunit	protein-coding
326	chr1	151253746	151253899	+	0	NA	promoter-TSS (NM_001304763)	promoter-TSS (NM_001304763)	-209	NM_001304764	57592	Hs.186756	NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
6471	chrY	13868755	13868757	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	664633	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1165	chr12	34846479	34846788	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	671417	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
2886	chr2	1859256	1859406	+	0	NA	intron (NM_001329845, intron 18 of 24)	intron (NM_001329845, intron 18 of 24)	-111012	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
2543	chr17	79369386	79369452	+	0	NA	Intergenic	CpG	-4102	NM_001291324	57597	Hs.514580	NM_024696	ENSG00000266074	BAHCC1	BAHD2	BAH domain and coiled-coil containing 1	protein-coding
5650	chr8	65179353	65179502	+	0	NA	intron (NR_125826, intron 1 of 4)	intron (NR_125826, intron 1 of 4)	101688	NR_125826	102724623	Hs.586375	NR_125826	ENSG00000253554	LOC102724623	-	uncharacterized LOC102724623	ncRNA
5224	chr7	61079628	61079878	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1684681	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
5129	chr7	8637463	8637667	+	0	NA	intron (NM_152745, intron 2 of 2)	intron (NM_152745, intron 2 of 2)	163980	NM_152745	30010	Hs.487564	NM_152745	ENSG00000122584	NXPH1	NPH1|Nbla00697	neurexophilin 1	protein-coding
3940	chr3	124211938	124212317	+	0	NA	intron (NM_001024660, intron 32 of 59)	intron (NM_001024660, intron 32 of 59)	-91379	NM_001322993	8997	Hs.8004	NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
335	chr1	164741392	164741498	+	0	NA	intron (NR_038072, intron 1 of 3)	intron (NR_038072, intron 1 of 3)	2433	NR_038072	100505795	Hs.661039	NR_038072	ENSG00000233693	LOC100505795	-	uncharacterized LOC100505795	ncRNA
3531	chr20	29814115	29814193	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-31313	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
4681	chr6	19602852	19603110	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	152929	NR_134615	105374960	Hs.519913	NR_134615		LOC105374960	-	uncharacterized LOC105374960	ncRNA
4287	chr4	109168858	109169161	+	0	NA	Intergenic	Intergenic	75733	NR_029373	641518	Hs.535760	NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
2791	chr18	67326592	67326613	+	0	NA	intron (NM_152721, intron 3 of 7)	intron (NM_152721, intron 3 of 7)	189435	NR_134579	105372179	Hs.666269	NR_134579	ENSG00000264845	LOC105372179	-	uncharacterized LOC105372179	ncRNA
5362	chr7	105537153	105537398	+	0	NA	Intergenic	Intergenic	-20244	NM_152749	222255	Hs.745056	NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
4481	chr5	72501507	72501627	+	0	NA	Intergenic	Intergenic	-3779	NR_134291	340090	Hs.434311	NR_134291		LOC340090	-	uncharacterized LOC340090	ncRNA
1867	chr14	79437145	79437317	+	0	NA	intron (NM_001330195, intron 14 of 20)	intron (NM_001330195, intron 14 of 20)	-229094	NR_135159	105370586		NR_135159	ENSG00000258419	LOC105370586	-	uncharacterized LOC105370586	ncRNA
4742	chr6	24283692	24283736	+	0	NA	intron (NM_016356, intron 6 of 9)	intron (NM_016356, intron 6 of 9)	-73417	NM_181337	353219	Hs.697888	NM_181337	ENSG00000146049	KAAG1	RU2AS	kidney associated antigen 1	protein-coding
3969	chr3	132280477	132280811	+	0	NA	intron (NR_132427, intron 15 of 17)	L1ME1|LINE|L1	-35437	NM_016557	51554	Hs.310512	NM_016557	ENSG00000129048	ACKR4	CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding
4664	chr6	15353483	15353488	+	0	NA	intron (NM_001267040, intron 1 of 17)	L1MB8|LINE|L1	104399	NM_001267040	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
2505	chr17	57591760	57591968	+	0	NA	intron (NR_110813, intron 1 of 2)	LTR89|LTR|ERVL?	12354	NR_110813	101927728	Hs.569720	NR_110813	ENSG00000265313	LINC01476	-	long intergenic non-protein coding RNA 1476	ncRNA
5756	chr8	103985752	103986037	+	0	NA	intron (NR_126338, intron 3 of 3)	MLT1D|LTR|ERVL-MaLR	-47354	NM_001695	528	Hs.86905	NM_001695	ENSG00000155097	ATP6V1C1	ATP6C|ATP6D|VATC|Vma5	ATPase H+ transporting V1 subunit C1	protein-coding
4856	chr6	61912838	61913132	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-371023	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
3533	chr20	29817717	29817767	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-27725	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
2936	chr2	9151460	9151651	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-7676	NR_135604	129642	Hs.467634	NM_138799	ENSG00000143797	MBOAT2	LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2	membrane bound O-acyltransferase domain containing 2	protein-coding
440	chr1	209425424	209425534	+	0	NA	Intergenic	Intergenic	-73322	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
1289	chr12	103635112	103635248	+	0	NA	intron (NR_103526, intron 10 of 10)	intron (NR_103526, intron 10 of 10)	89560	NR_126333	101929058	Hs.171310	NR_126333	ENSG00000257860	LOC101929058	-	uncharacterized LOC101929058	ncRNA
2525	chr17	72008118	72008187	+	0	NA	Intergenic	Intergenic	-183476	NR_027146	283982	Hs.464079	NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
6113	chrUn_gl000212	42042	42447	+	0	NA	intron (NR_027278, intron 1 of 7)	HSATI|Satellite|Satellite	18195	NR_027278	26080	Hs.448583	NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
841	chr11	31779007	31779139	+	0	NA	intron (NM_001288726, intron 10 of 11)	intron (NM_001288726, intron 10 of 11)	46712	NM_001310161	5080	Hs.270303	NM_000280	ENSG00000007372	PAX6	AN|AN2|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
1898	chr14	85435973	85436243	+	0	NA	Intergenic	LTR1B|LTR|ERV1	-417511	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
4668	chr6	15949874	15950025	+	0	NA	Intergenic	Intergenic	-179368	NM_013262	29116	Hs.484738	NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
1044	chr11	126458656	126458878	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	-63906	NR_120532	101929427	Hs.600341	NR_120532	ENSG00000254607	LOC101929427	-	uncharacterized LOC101929427	ncRNA
3513	chr20	26317842	26317895	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-127999	NR_040095	284801	Hs.370699	NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
5737	chr8	101428576	101429444	+	0	NA	Intergenic	Intergenic	34019	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
5548	chr8	9013647	9013727	+	0	NA	Intergenic	Tigger2a|DNA|TcMar-Tigger	-4535	NM_001201329	79660	Hs.458513	NM_024607	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1 regulatory subunit 3B	protein-coding
1751	chr14	61532475	61532744	+	0	NA	intron (NM_001172702, intron 15 of 16)	intron (NM_001172702, intron 15 of 16)	84644	NR_033344	145389	Hs.200738	NM_153811	ENSG00000139974	SLC38A6	NAT-1|SNAT6	solute carrier family 38 member 6	protein-coding
4029	chr3	177307749	177307892	+	0	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	148111	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
91	chr1	40167246	40167271	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9876	NM_016257	51440	Hs.743975	NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
2137	chr15	97243370	97243525	+	0	NA	Intergenic	LFSINE_Vert|SINE|SINE	81437	NR_102754	100652749	Hs.303588	NR_102753	ENSG00000259282	SPATA8-AS1	-	SPATA8 antisense RNA 1 (head to head)	ncRNA
4116	chr4	25565021	25565269	+	0	NA	intron (NR_134641, intron 1 of 3)	AluJb|SINE|Alu	5823	NR_134641	101929161	Hs.125638	NR_134641		LOC101929161	-	uncharacterized LOC101929161	ncRNA
467	chr1	221483010	221483586	+	0	NA	Intergenic	Intergenic	26340	NR_024236	400804	Hs.722626	NR_024236	ENSG00000234754	C1orf140	-	uncharacterized LOC400804	ncRNA
2121	chr15	92080140	92080177	+	0	NA	Intergenic	Intergenic	73589	NR_110106	101926928	Hs.638788	NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
474	chr1	224199669	224199712	+	0	NA	intron (NR_136593, intron 2 of 4)	intron (NR_136593, intron 2 of 4)	19258	NR_136593	100287497	Hs.568390	NR_136590		LOC100287497	-	septin 7 pseudogene	pseudo
3563	chr20	42646577	42646820	+	0	NA	intron (NM_001098798, intron 3 of 7)	intron (NM_001098798, intron 3 of 7)	72162	NM_001098798	84969	Hs.26608	NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
6024	chr9	107521426	107521554	+	0	NA	intron (NM_001329570, intron 4 of 4)	intron (NM_001329570, intron 4 of 4)	-4532	NM_018376	55335	Hs.429294	NM_018376	ENSG00000165028	NIPSNAP3B	FP944|NIPSNAP3|SNAP1	nipsnap homolog 3B	protein-coding
563	chr10	38817895	38817984	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	100865	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
3248	chr2	136899360	136899419	+	0	NA	Intergenic	Intergenic	-23664	NM_003467	7852	Hs.593413	NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS	C-X-C motif chemokine receptor 4	protein-coding
2919	chr2	5251991	5252158	+	0	NA	Intergenic	Intergenic	-548262	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
4058	chr3	188691304	188691503	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-25975	NR_046873	100874043	Hs.616287	NR_046873	ENSG00000234076	TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
2953	chr2	12006584	12006738	+	0	NA	Intergenic	L2c|LINE|L2	-29549	NR_036226	100422996		NR_036226	ENSG00000265172	MIR4262	-	microRNA 4262	ncRNA
6085	chr9_gl000199_random	31232	31641	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
3489	chr20	15277747	15277898	+	0	NA	intron (NM_080676, intron 6 of 16)	intron (NM_080676, intron 6 of 16)	100318	NM_001033087	140733	Hs.661576	NM_080676	ENSG00000172264	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
68	chr1	32527976	32528004	+	0	NA	Intergenic	Intergenic	-9642	NM_001319677	55116	Hs.25544	NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding
5488	chr7	140006788	140007285	+	0	NA	Intergenic	Intergenic	91314	NM_001287498	84255	Hs.446021	NM_032295	ENSG00000157800	SLC37A3	-	solute carrier family 37 member 3	protein-coding
4106	chr4	23819897	23820062	+	0	NA	intron (NM_013261, intron 7 of 12)	intron (NM_013261, intron 7 of 12)	62936	NM_001330753	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
6069	chr9	129200947	129201136	+	0	NA	intron (NM_033446, intron 7 of 9)	intron (NM_033446, intron 7 of 9)	-28258	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	non-protein coding RNA, repressor of NFAT	ncRNA
5338	chr7	84629909	84630033	+	0	NA	intron (NM_152754, intron 16 of 16)	intron (NM_152754, intron 16 of 16)	121276	NM_152754	223117	Hs.201340	NM_152754	ENSG00000153993	SEMA3D	Sema-Z2|coll-2	semaphorin 3D	protein-coding
2514	chr17	64419844	64420279	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	-7089	NR_110822	101928001	Hs.650730	NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
5081	chr6	157550771	157550808	+	0	NA	Intergenic	MER53|DNA|hAT	194502	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
5934	chr9	70009972	70010060	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	168799	NM_001126334	653427	Hs.714683	NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4-like 5	protein-coding
4176	chr4	49150727	49151942	+	0	NA	Intergenic	Intergenic	162675	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3628	chr21	10827049	10827211	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	163813	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
5961	chr9	81587879	81587898	+	0	NA	Intergenic	Intergenic	172693	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
3807	chr22	42796116	42796322	+	0	NA	intron (NM_001318323, intron 2 of 4)	intron (NM_001318323, intron 2 of 4)	-31005	NR_120596	102723775	Hs.335413	NR_120595	ENSG00000229891	LINC01315	lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
6322	chrX	109922957	109923080	+	0	NA	intron (NM_001143981, intron 10 of 11)	intron (NM_001143981, intron 10 of 11)	116058	NM_145234	91851	Hs.496587	NM_145234	ENSG00000101938	CHRDL1	CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1	chordin like 1	protein-coding
3995	chr3	170805693	170806077	+	0	NA	intron (NM_001161560, intron 22 of 31)	Charlie7|DNA|hAT-Charlie	18663	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
222	chr1	95818766	95819114	+	0	NA	Intergenic	Intergenic	-35121	NR_135588	100996630	Hs.662270	NR_135588	ENSG00000228504	LINC01760	-	long intergenic non-protein coding RNA 1760	ncRNA
5632	chr8	60556764	60556789	+	0	NA	Intergenic	Intergenic	-525009	NM_014729	9760	Hs.491805	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
2911	chr2	4676467	4676724	+	0	NA	non-coding (NR_034134, exon 5 of 5)	non-coding (NR_034134, exon 5 of 5)	27217	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
2418	chr17	19091680	19091770	+	0	NA	Intergenic	CpG	-25788	NM_001291904	79999	Hs.677375	NM_024934	ENSG00000197665	LOC79999	-	uncharacterized LOC79999	protein-coding
3132	chr2	89878912	89879736	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	767440	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
305	chr1	145028611	145029104	+	0	NA	intron (NM_022359, intron 1 of 6)	intron (NM_022359, intron 1 of 6)	11106	NR_144517	100996724	Hs.682380	NR_144516		LOC100996724	-	phosphodiesterase 4D interacting protein-like	pseudo
928	chr11	67594026	67594265	+	0	NA	Intergenic	Intergenic	-21338	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
1644	chr14	27404936	27405255	+	0	NA	Intergenic	Intergenic	27247	NR_036193	100423019		NR_036193	ENSG00000265165	MIR4307	-	microRNA 4307	ncRNA
6506	chrY	58996876	58996906	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-103512	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
1526	chr13	95898649	95898878	+	0	NA	intron (NM_001105515, intron 3 of 20)	intron (NM_001105515, intron 3 of 20)	54937	NM_005845	10257	Hs.508423	NM_005845	ENSG00000125257	ABCC4	MOAT-B|MOATB|MRP4	ATP binding cassette subfamily C member 4	protein-coding
4560	chr5	136709696	136709944	+	0	NA	intron (NM_004598, intron 2 of 10)	intron (NM_004598, intron 2 of 10)	125198	NM_004598	6695	Hs.596136	NM_004598	ENSG00000152377	SPOCK1	SPOCK|TESTICAN|TIC1	SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1	protein-coding
4276	chr4	94105370	94105565	+	0	NA	intron (NM_001286838, intron 3 of 14)	intron (NM_001286838, intron 3 of 14)	-644611	NM_005172	474	Hs.532680	NM_005172	ENSG00000172238	ATOH1	ATH1|HATH1|MATH-1|bHLHa14	atonal bHLH transcription factor 1	protein-coding
3245	chr2	136898959	136899046	+	0	NA	Intergenic	Intergenic	-23277	NM_003467	7852	Hs.593413	NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS	C-X-C motif chemokine receptor 4	protein-coding
217	chr1	90276227	90276334	+	0	NA	Intergenic	Intergenic	-10293	NM_001134479	55144	Hs.482087	NM_018103	ENSG00000171492	LRRC8D	LRRC5	leucine rich repeat containing 8 family member D	protein-coding
4815	chr6	51128757	51128947	+	0	NA	Intergenic	MIRb|SINE|MIR	342413	NM_003221	7021	Hs.33102	NM_003221	ENSG00000008196	TFAP2B	AP-2B|AP2-B|PDA2	transcription factor AP-2 beta	protein-coding
4076	chr3	196625611	196625786	+	0	NA	intron (NM_152699, intron 2 of 9)	HSATII|Satellite|Satellite	30971	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
158	chr1	62392443	62392561	+	0	NA	intron (NM_176877, intron 26 of 42)	intron (NM_176877, intron 26 of 42)	-151956	NR_036058	100422902		NR_036058	ENSG00000263908	MIR3116-1	-	microRNA 3116-1	ncRNA
281	chr1	121462459	121462477	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	201558	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
3832	chr3	16524600	16524711	+	0	NA	intron (NM_015150, intron 2 of 9)	intron (NM_015150, intron 2 of 9)	30567	NM_015150	23180	Hs.98910	NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
3412	chr2	229478140	229478331	+	0	NA	Intergenic	Intergenic	-431874	NM_030623	80309	Hs.436306	NM_030623	ENSG00000153820	SPHKAP	SKIP	SPHK1 interactor, AKAP domain containing	protein-coding
4928	chr6	90708950	90709124	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	104849	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
6415	chrY	13811279	13811325	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	722087	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3658	chr21	10856990	10857073	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	133912	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
1418	chr12	130796994	130797082	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-25395	NM_004764	9271	Hs.405659	NM_004764	ENSG00000125207	PIWIL1	CT80.1|HIWI|MIWI|PIWI	piwi like RNA-mediated gene silencing 1	protein-coding
36	chr1	11623652	11623908	+	0	NA	Intergenic	Intergenic	-45808	NR_104624	101929181	Hs.568616	NR_104624	ENSG00000235643	LINC01647	-	long intergenic non-protein coding RNA 1647	ncRNA
6485	chrY	28786766	28786798	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	912145	NR_002176	474148	Hs.511777	NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis-specific transcript, Y-linked 3B (non-protein coding)	ncRNA
5150	chr7	25817933	25818064	+	0	NA	Intergenic	Intergenic	171608	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
1368	chr12	117924277	117924322	+	0	NA	intron (NM_173598, intron 14 of 19)	intron (NM_173598, intron 14 of 19)	-124692	NM_001204218	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
748	chr10	126382284	126382577	+	0	NA	intron (NM_014661, intron 3 of 4)	L2c|LINE|L2	-10167	NR_120631	101927944	Hs.437448	NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
472	chr1	223830003	223830250	+	0	NA	intron (NM_001143962, intron 2 of 16)	intron (NM_001143962, intron 2 of 16)	23310	NM_001143962	388743	Hs.291487	NM_001143962	ENSG00000203697	CAPN8	nCL-2	calpain 8	protein-coding
1655	chr14	30334355	30334437	+	0	NA	intron (NM_001330069, intron 1 of 18)	intron (NM_001330069, intron 1 of 18)	62503	NM_002742	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding
5077	chr6	157113903	157114270	+	0	NA	intron (NM_020732, intron 1 of 19)	intron (NM_020732, intron 1 of 19)	-13221	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
1943	chr14	96207369	96207963	+	0	NA	Intergenic	Intergenic	-27133	NR_049726	8115	Hs.2484	NM_021966	ENSG00000100721	TCL1A	TCL1	T-cell leukemia/lymphoma 1A	protein-coding
711	chr10	94480007	94480384	+	0	NA	Intergenic	Intergenic	30514	NM_002729	3087	Hs.118651	NM_002729	ENSG00000152804	HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
132	chr1	51076996	51076997	+	0	NA	intron (NM_007051, intron 8 of 18)	intron (NM_007051, intron 8 of 18)	-187877	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
1791	chr14	68555722	68555965	+	0	NA	intron (NM_001321809, intron 7 of 11)	intron (NM_001321809, intron 7 of 11)	265534	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
5412	chr7	120954082	120954206	+	0	NA	Intergenic	Intergenic	-11277	NM_016087	51384	Hs.272375	NM_016087	ENSG00000002745	WNT16	-	Wnt family member 16	protein-coding
3779	chr22	29219058	29219503	+	0	NA	Intergenic	Intergenic	-22720	NM_005080	7494	Hs.437638	NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
5724	chr8	95971237	95971453	+	0	NA	Intergenic	L2a|LINE|L2	-9730	NM_001135733	94241	Hs.492261	NM_033285	ENSG00000164938	TP53INP1	SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1	tumor protein p53 inducible nuclear protein 1	protein-coding
3747	chr22	18878056	18878371	+	0	NA	intron (NR_136571, intron 1 of 11)	HSATI|Satellite|Satellite	3731	NR_136571	100996432	Hs.631668	NR_136571		LINC01663	-	long intergenic non-protein coding RNA 1663	ncRNA
2180	chr16	16652927	16653098	+	0	NA	Intergenic	Intergenic	179910	NM_001282507	101059938	Hs.634612	NM_001282507	ENSG00000214967	NPIPA7	-	nuclear pore complex interacting protein family member A7	protein-coding
2769	chr18	60349895	60350062	+	0	NA	Intergenic	Intergenic	-32694	NM_194449	23239	Hs.465337	NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
1428	chr13	22496302	22496585	+	0	NA	Intergenic	MamRep434|DNA|TcMar-Tigger	-44144	NR_047040	100874182	Hs.148951	NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
6060	chr9	126968966	126969191	+	0	NA	Intergenic	MIR|SINE|MIR	-50807	NM_001166167	10783	Hs.197071	NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
4081	chr4	918382	918436	+	0	NA	intron (NM_005255, intron 1 of 27)	MSTA|LTR|ERVL-MaLR	-7766	NM_001297427	84286	Hs.478936	NM_032326	ENSG00000127419	TMEM175	hTMEM175	transmembrane protein 175	protein-coding
5369	chr7	106765729	106765875	+	0	NA	intron (NM_002736, intron 3 of 10)	MIR|SINE|MIR	-43604	NM_001244262	26959	Hs.162032	NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
1018	chr11	115280730	115280876	+	0	NA	intron (NM_001098517, intron 1 of 8)	intron (NM_001098517, intron 1 of 8)	13329	NR_135102	105369507	Hs.664155	NR_135102	ENSG00000256315	LOC105369507	-	uncharacterized LOC105369507	ncRNA
4992	chr6	107950771	107950932	+	0	NA	intron (NM_018013, intron 5 of 6)	intron (NM_018013, intron 5 of 6)	102749	NM_001286409	256380	Hs.486109	NM_198081	ENSG00000146285	SCML4	dJ47M23.1	sex comb on midleg-like 4 (Drosophila)	protein-coding
1125	chr12	16758507	16758678	+	0	NA	promoter-TSS (NM_001243611)	promoter-TSS (NM_001243611)	-279	NM_001243611	55885	Hs.504908	NM_018640	ENSG00000048540	LMO3	RBTN3|RBTNL2|RHOM3|Rhom-3	LIM domain only 3	protein-coding
2279	chr16	46443700	46443713	+	0	NA	Intergenic	HSATII|Satellite|Satellite	159303	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
741	chr10	112897159	112897257	+	0	NA	Intergenic	Intergenic	60418	NM_000681	150	Hs.249159	NM_000681	ENSG00000150594	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32	adrenoceptor alpha 2A	protein-coding
6126	chrUn_gl000216	2741	2886	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5696	chr8	85240363	85240531	+	0	NA	intron (NM_001100391, intron 1 of 8)	intron (NM_001100391, intron 1 of 8)	143347	NM_001100391	138046	Hs.121663	NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
998	chr11	112885306	112885643	+	0	NA	intron (NM_001076682, intron 2 of 19)	intron (NM_001076682, intron 2 of 19)	-51292	NR_120563	101928847	Hs.711235	NR_120563	ENSG00000247416	LOC101928847	-	uncharacterized LOC101928847	ncRNA
2806	chr19	5961971	5962423	+	0	NA	intron (NM_003624, intron 1 of 16)	intron (NM_003624, intron 1 of 16)	16123	NM_001300865	8498	Hs.531752	NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
4831	chr6	53791856	53791904	+	0	NA	Intergenic	Intergenic	-2900	NR_125842	101927189	Hs.453592	NR_125842	ENSG00000236740	LOC101927189	-	uncharacterized LOC101927189	ncRNA
4621	chr5	175610744	175610766	+	0	NA	intron (NR_036494, intron 4 of 25)	intron (NR_036494, intron 4 of 25)	15543	NR_036494	643201	Hs.390285	NR_036494	ENSG00000248596	LOC643201	-	centrosomal protein 192kDa pseudogene	pseudo
3032	chr2	56749859	56749931	+	0	NA	Intergenic	L2b|LINE|L2	-336990	NR_125368	100129434	Hs.580330	NR_125368		LOC100129434	-	uncharacterized LOC100129434	ncRNA
1789	chr14	68488018	68488252	+	0	NA	intron (NM_001321809, intron 7 of 11)	L2b|LINE|L2	197826	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
3880	chr3	99630204	99630337	+	0	NA	intron (NR_031662, intron 1 of 4)	intron (NR_031662, intron 1 of 4)	-35223	NM_001282793	11259	Hs.104672	NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
4757	chr6	24721709	24721798	+	0	NA	Intergenic	CpG	-2350	NM_030939	81688	Hs.744857	NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
3947	chr3	124980055	124980180	+	0	NA	intron (NM_021964, intron 7 of 8)	intron (NM_021964, intron 7 of 8)	-48508	NM_024628	84561	Hs.658514	NM_024628	ENSG00000221955	SLC12A8	CCC9	solute carrier family 12 member 8	protein-coding
3192	chr2	99485371	99486256	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	66871	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211 like	protein-coding
2076	chr15	69886464	69886637	+	0	NA	intron (NR_126438, intron 1 of 3)	intron (NR_126438, intron 1 of 3)	2011	NR_126437	104472713	Hs.430824	NR_126437	ENSG00000259641	PCAT29	-	prostate cancer associated transcript 29 (non-protein coding)	ncRNA
4294	chr4	113987241	113987801	+	0	NA	intron (NM_001148, intron 1 of 45)	intron (NM_001148, intron 1 of 45)	16736	NM_001148	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding
5159	chr7	27072448	27072904	+	0	NA	Intergenic	Intergenic	62949	NM_005522	3198	Hs.67397	NM_005522	ENSG00000105991	HOXA1	BSAS|HOX1|HOX1F	homeobox A1	protein-coding
1545	chr13	99057364	99057561	+	0	NA	intron (NM_005766, intron 13 of 26)	intron (NM_005766, intron 13 of 26)	116917	NM_003576	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
1838	chr14	75877112	75877126	+	0	NA	Intergenic	Intergenic	-17390	NM_001135047	122953	Hs.196482	NM_130469	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
6468	chrY	13868557	13868585	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	664818	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1773	chr14	63742612	63743123	+	0	NA	intron (NM_020663, intron 2 of 4)	MER5A|DNA|hAT-Charlie	42726	NM_145171	122876	Hs.375028	NM_145171	ENSG00000179600	GPHB5	B5|GPB5|ZLUT1	glycoprotein hormone beta 5	protein-coding
1058	chr11	126976532	126976643	+	0	NA	Intergenic	Intergenic	39690	NR_120578	101929473	Hs.737523	NR_120578	ENSG00000255087	LOC101929473	-	uncharacterized LOC101929473	ncRNA
4989	chr6	107513869	107514101	+	0	NA	intron (NM_020381, intron 7 of 7)	intron (NM_020381, intron 7 of 7)	-78349	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
3883	chr3	103637080	103637341	+	0	NA	Intergenic	Intergenic	308895	NR_030330	693127		NR_030330	ENSG00000208032	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA
6192	chrUn_gl000216	79591	79704	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
3704	chr21	38439551	38439691	+	0	NA	exon (NM_001320480, exon 4 of 5)	exon (NM_001320480, exon 4 of 5)	-3255	NR_131189	105372795	Hs.528019	NR_131189		LOC105372795	-	uncharacterized LOC105372795	ncRNA
3166	chr2	92281204	92281247	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	152066	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
5417	chr7	125416082	125416118	+	0	NA	Intergenic	Intergenic	-511755	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
6211	chrUn_gl000216	163188	163209	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
3392	chr2	221649981	221650294	+	0	NA	Intergenic	Intergenic	786941	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
6374	chrY	13458537	13458593	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1074824	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
2860	chr19	49042955	49043194	+	0	NA	Intergenic	MIR|SINE|MIR	-12355	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	sulfotransferase family 2B member 1	protein-coding
3141	chr2	90372540	90372543	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1260657	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
1535	chr13	98252624	98252795	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	166234	NM_021033	5911	Hs.508480	NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
5299	chr7	69119709	69119991	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	55945	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
4978	chr6	105773998	105774378	+	0	NA	intron (NM_002726, intron 9 of 14)	intron (NM_002726, intron 9 of 14)	76811	NM_002726	5550	Hs.436564	NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
3775	chr22	28729172	28729569	+	0	NA	intron (NM_001145418, intron 2 of 22)	intron (NM_001145418, intron 2 of 22)	-126487	NR_106713	102466081		NR_106713	ENSG00000276162	MIR5739	hsa-mir-5739	microRNA 5739	ncRNA
5258	chr7	61798515	61798735	+	0	NA	Intergenic	HSATII|Satellite|Satellite	965809	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
6450	chrY	13851926	13851931	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	681461	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4253	chr4	81228936	81228953	+	0	NA	Intergenic	Intergenic	-27930	NM_001206997	255119	Hs.527104	NM_152770	ENSG00000197826	C4orf22	-	chromosome 4 open reading frame 22	protein-coding
5690	chr8	82556441	82556562	+	0	NA	Intergenic	L3|LINE|CR1	42088	NM_005536	3612	Hs.656694	NM_005536	ENSG00000133731	IMPA1	IMP|IMPA	inositol monophosphatase 1	protein-coding
1335	chr12	112547274	112547480	+	0	NA	promoter-TSS (NM_024953)	promoter-TSS (NM_024953)	-742	NM_024953	80018	Hs.530941	NM_024953	ENSG00000111300	NAA25	C12orf30|MDM20|NAP1	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding
4652	chr6	6835552	6835711	+	0	NA	Intergenic	L1ME5|LINE|L1	-212572	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
3780	chr22	29329770	29329987	+	0	NA	intron (NM_032173, intron 1 of 8)	intron (NM_032173, intron 1 of 8)	16501	NM_032173	84133	Hs.604200	NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
3974	chr3	139187732	139187893	+	0	NA	intron (NM_004164, intron 1 of 3)	intron (NM_004164, intron 1 of 3)	7540	NM_004164	5948	Hs.655516	NM_004164	ENSG00000114113	RBP2	CRABP-II|CRBP2|CRBPII|RBPC2	retinol binding protein 2	protein-coding
4847	chr6	61901956	61902064	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-381998	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
5240	chr7	61742895	61743042	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1021466	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
3918	chr3	114618459	114618473	+	0	NA	intron (NM_001164343, intron 3 of 11)	intron (NM_001164343, intron 3 of 11)	1003	NR_121662	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
3409	chr2	229311339	229311464	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-265040	NM_030623	80309	Hs.436306	NM_030623	ENSG00000153820	SPHKAP	SKIP	SPHK1 interactor, AKAP domain containing	protein-coding
5442	chr7	129475254	129475361	+	0	NA	intron (NM_182697, intron 4 of 4)	intron (NM_182697, intron 4 of 4)	-60453	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
5419	chr7	125416677	125416799	+	0	NA	Intergenic	L1MA10|LINE|L1	-512393	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
5011	chr6	111862003	111862490	+	0	NA	intron (NR_034109, intron 1 of 1)	intron (NR_034109, intron 1 of 1)	26317	NM_001164283	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
4490	chr5	77312430	77312624	+	0	NA	intron (NM_003664, intron 25 of 26)	intron (NM_003664, intron 25 of 26)	58456	NR_105013	101929154	Hs.252895	NR_105012		LOC101929154	-	uncharacterized LOC101929154	ncRNA
5270	chr7	64500267	64500576	+	0	NA	intron (NR_033416, intron 1 of 10)	intron (NR_033416, intron 1 of 10)	1689	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	chaperonin containing TCP1 subunit 6 pseudogene 3	pseudo
165	chr1	65516434	65516474	+	0	NA	intron (NM_001321853, intron 2 of 26)	intron (NM_001321853, intron 2 of 26)	7071	NR_037443	100500854		NR_037443	ENSG00000265996	MIR3671	-	microRNA 3671	ncRNA
4579	chr5	149189685	149189863	+	0	NA	intron (NM_001172699, intron 1 of 10)	intron (NM_001172699, intron 1 of 10)	38271	NM_001172699	133522	Hs.483816	NM_133263	ENSG00000155846	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	PPARG coactivator 1 beta	protein-coding
2351	chr16	71018593	71018766	+	0	NA	intron (NM_001270974, intron 28 of 85)	intron (NM_001270974, intron 28 of 85)	-183618	NM_018052	55697	Hs.445061	NM_018052	ENSG00000103043	VAC14	ArPIKfyve|SNDC|TAX1BP2|TRX	Vac14, PIKFYVE complex component	protein-coding
729	chr10	101774240	101774395	+	0	NA	Intergenic	L2a|LINE|L2	-4607	NM_015221	23268	Hs.500771	NM_015221	ENSG00000107554	DNMBP	ARHGEF36|TUBA	dynamin binding protein	protein-coding
4509	chr5	102004625	102004881	+	0	NA	intron (NR_103753, intron 1 of 2)	intron (NR_103753, intron 1 of 2)	2415	NR_103756	285708	Hs.533011	NR_103753		LINC00491	-	long intergenic non-protein coding RNA 491	ncRNA
2	chr1	724132	724205	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-10100	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
4229	chr4	67918809	67919334	+	0	NA	Intergenic	Intergenic	368647	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
6074	chr9	135347576	135347708	+	0	NA	intron (NM_001282957, intron 1 of 5)	intron (NM_001282957, intron 1 of 5)	62059	NM_001282957	389799	Hs.201709	NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
6319	chrX	79610059	79610454	+	0	NA	intron (NM_001170574, intron 3 of 4)	L1P4e|LINE|L1	19253	NM_001170574	169966	Hs.367959	NM_152630	ENSG00000174016	FAM46D	CT1.26|CT112	family with sequence similarity 46 member D	protein-coding
2125	chr15	92415757	92416121	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	18409	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
2553	chr18	107338	110037	+	0	NA	promoter-TSS (NR_033770)	promoter-TSS (NR_033770)	-378	NR_033770	727758	Hs.585843	NR_033770	ENSG00000263006	ROCK1P1	-	Rho associated coiled-coil containing protein kinase 1 pseudogene 1	pseudo
1231	chr12	89619637	89619645	+	0	NA	Intergenic	Intergenic	126995	NM_001946	1848	Hs.298654	NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
2979	chr2	38013831	38013834	+	0	NA	Intergenic	MIRb|SINE|MIR	43022	NR_110011	101929559	Hs.468200	NR_110011	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
3270	chr2	150742016	150742193	+	0	NA	Intergenic	Intergenic	-297774	NM_015702	27249	Hs.5324	NM_015702	ENSG00000168288	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria and homocystinuria, cblD type	protein-coding
2446	chr17	25267940	25268207	+	0	NA	Intergenic	Intergenic	148194	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
973	chr11	92711814	92711983	+	0	NA	intron (NM_005959, intron 1 of 1)	intron (NM_005959, intron 1 of 1)	9109	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
2961	chr2	25008382	25008496	+	0	NA	Intergenic	AluSx|SINE|Alu	-7545	NR_136184	79172	Hs.731569	NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
2569	chr18	3720833	3721249	+	0	NA	intron (NM_001308390, intron 4 of 10)	AluJo|SINE|Alu	117306	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
5644	chr8	62620079	62620289	+	0	NA	intron (NM_032466, intron 1 of 13)	L1ME3C|LINE|L1	7015	NM_001164755	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
1046	chr11	126459302	126459559	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	-63243	NR_120532	101929427	Hs.600341	NR_120532	ENSG00000254607	LOC101929427	-	uncharacterized LOC101929427	ncRNA
5864	chr9	8887959	8888242	+	0	NA	intron (NM_002839, intron 11 of 45)	intron (NM_002839, intron 11 of 45)	30082	NR_121599	101929407	Hs.649971	NR_121599		PTPRD-AS1	-	PTPRD antisense RNA 1	ncRNA
319	chr1	149035632	149035773	+	0	NA	intron (NR_104217, intron 2 of 17).2	HSATII|Satellite|Satellite	74023	NR_104217	101929780	Hs.534675	NR_104217	ENSG00000272150	NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family member 25, pseudogene	pseudo
4021	chr3	176638190	176638488	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-103550	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
2571	chr18	3726321	3726340	+	0	NA	intron (NM_001308390, intron 4 of 10)	intron (NM_001308390, intron 4 of 10)	119028	NM_001242766	9229	Hs.594640	NM_004746	ENSG00000170579	DLGAP1	DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1	DLG associated protein 1	protein-coding
2857	chr19	47448322	47448523	+	0	NA	intron (NM_004491, intron 2 of 5)	intron (NM_004491, intron 2 of 5)	26489	NM_004491	2909	Hs.509447	NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
1179	chr12	41682298	41682437	+	0	NA	intron (NM_001164595, intron 3 of 9)	intron (NM_001164595, intron 3 of 9)	100117	NM_001164595	29951	Hs.380044	NM_013377	ENSG00000165966	PDZRN4	LNX4|SAMCAP3L	PDZ domain containing ring finger 4	protein-coding
1922	chr14	89792767	89792973	+	0	NA	intron (NM_001085471, intron 3 of 6)	intron (NM_001085471, intron 3 of 6)	90584	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
735	chr10	105308980	105309185	+	0	NA	intron (NM_004210, intron 1 of 5)	intron (NM_004210, intron 1 of 5)	-31883	NR_120675	102724341	Hs.599425	NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
3048	chr2	64558606	64558812	+	0	NA	Intergenic	Intergenic	-9184	NR_039632	100616265		NR_039632	ENSG00000283222	MIR4433A	MIR4433|hsa-mir-4433a	microRNA 4433a	ncRNA
2948	chr2	11260880	11261201	+	0	NA	non-coding (NR_040080, exon 6 of 9)	non-coding (NR_040080, exon 6 of 9)	11262	NR_040080	285150	Hs.329841	NM_182586	ENSG00000145063	FLJ33534	-	uncharacterized LOC285150	ncRNA
6394	chrY	13704407	13704414	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	828979	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1271	chr12	99962813	99962870	+	0	NA	intron (NM_152788, intron 9 of 25)	intron (NM_152788, intron 9 of 25)	-78687	NM_153364	196472	Hs.591011	NM_153364	ENSG00000180219	FAM71C	-	family with sequence similarity 71 member C	protein-coding
4566	chr5	138482570	138482597	+	0	NA	intron (NM_022464, intron 1 of 9)	intron (NM_022464, intron 1 of 9)	51482	NM_022464	64374	Hs.483521	NM_022464	ENSG00000120725	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding
344	chr1	169153991	169154116	+	0	NA	intron (NM_197972, intron 10 of 11)	MER63A|DNA|hAT-Blackjack	78106	NM_001677	481	Hs.291196	NM_001677	ENSG00000143153	ATP1B1	ATP1B	ATPase Na+/K+ transporting subunit beta 1	protein-coding
4682	chr6	19632476	19632693	+	0	NA	Intergenic	Intergenic	172406	NR_134649	100506885	Hs.346489	NR_134649	ENSG00000228412	LOC100506885	-	uncharacterized LOC100506885	ncRNA
2103	chr15	74790283	74790552	+	0	NA	Intergenic	AluSx|SINE|Alu	36811	NR_120377	440288	Hs.611046	NR_038448	ENSG00000247240	UBL7-AS1	-	UBL7 antisense RNA 1 (head to head)	ncRNA
2949	chr2	11680002	11680209	+	0	NA	promoter-TSS (NM_148903)	promoter-TSS (NM_148903)	25	NM_148903	9687	Hs.467733	NM_014668	ENSG00000196208	GREB1	-	growth regulation by estrogen in breast cancer 1	protein-coding
1710	chr14	45181118	45181386	+	0	NA	Intergenic	Intergenic	-185255	NM_001017923	122525	Hs.82098	NM_001017923	ENSG00000179476	C14orf28	DRIP-1|DRIP1|c14_5270	chromosome 14 open reading frame 28	protein-coding
4783	chr6	37276422	37276551	+	0	NA	intron (NM_017772, intron 8 of 12)	intron (NM_017772, intron 8 of 12)	-45262	NR_046399	9025	Hs.485278	NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding
2224	chr16	33874002	33874140	+	0	NA	Intergenic	(GAATG)n|Simple_repeat|Simple_repeat	88432	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
1133	chr12	21590735	21590876	+	0	NA	intron (NM_024854, intron 1 of 11)	intron (NM_024854, intron 1 of 11)	267	NM_024854	79912	Hs.709545	NM_024854	ENSG00000121350	PYROXD1	MFM8	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding
6271	chrX	47400540	47400547	+	0	NA	Intergenic	Intergenic	-19956	NM_001654	369	Hs.446641	NM_001654	ENSG00000078061	ARAF	A-RAF|ARAF1|PKS2|RAFA1	A-Raf proto-oncogene, serine/threonine kinase	protein-coding
5476	chr7	137074944	137075128	+	0	NA	3' UTR (NM_004717, exon 34 of 34)	3' UTR (NM_004717, exon 34 of 34)	-46300	NM_002825	5764	Hs.371249	NM_002825	ENSG00000105894	PTN	HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1	pleiotrophin	protein-coding
2421	chr17	22247015	22247045	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	224593	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
209	chr1	87568617	87569084	+	0	NA	intron (NM_012262, intron 5 of 6)	intron (NM_012262, intron 5 of 6)	-26598	NR_026989	339524	Hs.306423	NM_207357	ENSG00000267272	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA
2837	chr19	29799266	29799735	+	0	NA	intron (NR_040029, intron 9 of 9)	intron (NR_040029, intron 9 of 9)	-95364	NM_006003	7386	Hs.743307	NM_006003	ENSG00000169021	UQCRFS1	RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
4456	chr5	49438996	49439706	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	297883	NM_198449	133418	Hs.561411	NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
4132	chr4	49100389	49100951	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	112011	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
1118	chr12	14538082	14538255	+	0	NA	5' UTR (NM_181352, exon 1 of 15)	5' UTR (NM_181352, exon 1 of 15)	170	NM_181352	55729	Hs.504856	NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
1575	chr13	103968036	103968135	+	0	NA	Intergenic	Intergenic	-109465	NR_126374	104326190	Hs.334381	NR_126374	ENSG00000234551	LINC01309	TCONS_l2_00007459	long intergenic non-protein coding RNA 1309	ncRNA
5916	chr9	66971749	66971758	+	0	NA	intron (NR_135597, intron 4 of 4).3	ALR/Alpha|Satellite|centr	48786	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
5152	chr7	26449648	26449970	+	0	NA	intron (NR_015364, intron 1 of 4)	intron (NR_015364, intron 1 of 4)	6701	NR_015364	441204	Hs.587432	NR_015364		LOC441204	-	uncharacterized LOC441204	ncRNA
2428	chr17	25263712	25263963	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	152430	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
5564	chr8	24392179	24392465	+	0	NA	intron (NR_125808, intron 1 of 5)	intron (NR_125808, intron 1 of 5)	13809	NR_125808	101929294	Hs.637673	NR_125808		LOC101929294	-	uncharacterized LOC101929294	ncRNA
4718	chr6	21748839	21748854	+	0	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	82171	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
4460	chr5	49440553	49440769	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	296573	NM_198449	133418	Hs.561411	NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
5080	chr6	157508711	157509173	+	0	NA	intron (NM_020732, intron 13 of 19)	intron (NM_020732, intron 13 of 19)	236349	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
5683	chr8	82281852	82282033	+	0	NA	Intergenic	Intergenic	77777	NM_002677	5375	Hs.571512	NM_002677	ENSG00000147588	PMP2	FABP8|M-FABP|MP2|P2	peripheral myelin protein 2	protein-coding
5561	chr8	22418696	22418924	+	0	NA	intron (NM_005775, intron 5 of 20)	intron (NM_005775, intron 5 of 20)	-4369	NM_001018003	10174	Hs.528572	NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
4191	chr4	49635172	49635191	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	646522	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
600	chr10	39107443	39107486	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	117737	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
80	chr1	35942041	35942221	+	0	NA	intron (NM_024874, intron 4 of 20)	intron (NM_024874, intron 4 of 20)	80906	NM_024874	79932	Hs.456507	NM_024874	ENSG00000142687	KIAA0319L	AAVR	KIAA0319 like	protein-coding
336	chr1	164741499	164741761	+	0	NA	intron (NR_038072, intron 1 of 3)	intron (NR_038072, intron 1 of 3)	2248	NR_038072	100505795	Hs.661039	NR_038072	ENSG00000233693	LOC100505795	-	uncharacterized LOC100505795	ncRNA
457	chr1	218422851	218422952	+	0	NA	Intergenic	Intergenic	-35728	NM_016052	51018	Hs.660109	NM_016052	ENSG00000067533	RRP15	CGI-115|KIAA0507	ribosomal RNA processing 15 homolog	protein-coding
4998	chr6	108988260	108988376	+	0	NA	intron (NM_001455, intron 2 of 2)	intron (NM_001455, intron 2 of 2)	-84539	NR_033376	387111	Hs.520310	NR_033376	ENSG00000203801	LINC00222	C6orf181|NCRNA00222|dJ354J5.2	long intergenic non-protein coding RNA 222	ncRNA
1301	chr12	104670010	104670301	+	0	NA	intron (NM_001093771, intron 3 of 16)	intron (NM_001093771, intron 3 of 16)	-10305	NM_182742	7296	Hs.654922	NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR	thioredoxin reductase 1	protein-coding
5247	chr7	61783910	61784195	+	0	NA	Intergenic	HSATII|Satellite|Satellite	980382	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
383	chr1	184874900	184875063	+	0	NA	intron (NM_052966, intron 1 of 13)	intron (NM_052966, intron 1 of 13)	68737	NM_052966	116496	Hs.518662	NM_052966	ENSG00000135842	FAM129A	C1orf24|GIG39|NIBAN	family with sequence similarity 129 member A	protein-coding
4945	chr6	92370020	92370112	+	0	NA	intron (NR_104154, intron 2 of 3)	LTR82A|LTR|ERVL	30080	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA
2532	chr17	75733552	75733611	+	0	NA	Intergenic	(CATGC)n|Simple_repeat|Simple_repeat	-8940	NR_104134	100132174	Hs.640110	NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
3817	chr3	139301	139397	+	0	NA	Intergenic	Intergenic	73918	NR_110824	102723448	Hs.543290	NR_110824		LINC01986	-	long intergenic non-protein coding RNA 1986	ncRNA
6449	chrY	13851880	13851925	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	681487	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1873	chr14	80821177	80821481	+	0	NA	intron (NR_038355, intron 2 of 8)	intron (NR_038355, intron 2 of 8)	-123932	NM_000793	1734	Hs.202354	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	iodothyronine deiodinase 2	protein-coding
2497	chr17	56494991	56495130	+	0	NA	promoter-TSS (NM_001305544)	promoter-TSS (NM_001305544)	-117	NM_001305544	54894	Hs.584916	NM_017763	ENSG00000108375	RNF43	RNF124|SSPCS|URCC	ring finger protein 43	protein-coding
3651	chr21	10850078	10850151	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	140829	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
4157	chr4	49133595	49136426	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	146351	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
92	chr1	40167272	40167585	+	0	NA	Intergenic	Intergenic	-10046	NM_016257	51440	Hs.743975	NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
5354	chr7	95207847	95207896	+	0	NA	Intergenic	L2c|LINE|L2	18054	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	pyruvate dehydrogenase kinase 4	protein-coding
4791	chr6	38183097	38183426	+	0	NA	intron (NM_001099272, intron 9 of 10)	intron (NM_001099272, intron 9 of 10)	-266111	NR_144472	101929425	Hs.665280	NR_144472		BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
3687	chr21	37052397	37052557	+	0	NA	Intergenic	Intergenic	-40536	NR_030414	768219		NR_030414	ENSG00000211590	MIR802	MIRN802|hsa-mir-802	microRNA 802	ncRNA
1212	chr12	67986647	67986783	+	0	NA	Intergenic	Intergenic	-55797	NM_006482	8445	Hs.173135	NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
2253	chr16	33974799	33974799	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-12296	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
2787	chr18	65900664	65900667	+	0	NA	Intergenic	ERVL-int|LTR|ERVL	481688	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin related transmembrane protein 3	protein-coding
2433	chr17	25264586	25265482	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	151233	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
1477	chr13	44792970	44793301	+	0	NA	Intergenic	Intergenic	-22799	NR_107046	102465876		NR_107046	ENSG00000276319	MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
1164	chr12	34846201	34846478	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	671123	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
5450	chr7	129937730	129937807	+	0	NA	intron (NM_001163446, intron 1 of 9)	intron (NM_001163446, intron 1 of 9)	4794	NM_016352	51200	Hs.93764	NM_016352	ENSG00000128510	CPA4	CPA3	carboxypeptidase A4	protein-coding
2824	chr19	13137591	13137764	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	2282	NM_001271043	4784	Hs.257970	NM_002501	ENSG00000008441	NFIX	CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
6404	chrY	13808908	13808971	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	724450	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5777	chr8	110610501	110610744	+	0	NA	intron (NM_001099748, intron 4 of 7)	MIR|SINE|MIR	9669	NM_001330596	55638	Hs.390738	NM_017786	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin	protein-coding
4597	chr5	153865906	153866102	+	0	NA	Intergenic	Intergenic	-8180	NM_004821	9421	Hs.152531	NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
505	chr1	244402550	244402763	+	0	NA	Intergenic	MIRb|SINE|MIR	-113281	NM_001276349	200159	Hs.442703	NM_001012970	ENSG00000173728	C1orf100	-	chromosome 1 open reading frame 100	protein-coding
6310	chrX	61734216	61734297	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	836962	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
2739	chr18	53073213	53073381	+	0	NA	intron (NM_001330604, intron 5 of 19)	intron (NM_001330604, intron 5 of 19)	-2071	NM_001306208	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
670	chr10	70631543	70631602	+	0	NA	intron (NM_001130161, intron 1 of 4)	intron (NM_001130161, intron 1 of 4)	-29462	NM_024045	79009	Hs.522984	NM_024045	ENSG00000107625	DDX50	GU2|GUB|RH-II/GuB|mcdrh	DExD-box helicase 50	protein-coding
1094	chr12	5048560	5048647	+	0	NA	Intergenic	Intergenic	29530	NM_000217	3736	Hs.416139	NM_000217	ENSG00000111262	KCNA1	AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1	potassium voltage-gated channel subfamily A member 1	protein-coding
419	chr1	206724076	206724344	+	0	NA	intron (NM_182664, intron 2 of 4)	intron (NM_182664, intron 2 of 4)	-6282	NM_182665	83593	Hs.497579	NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
995	chr11	112274667	112274778	+	0	NA	Intergenic	Intergenic	-78233	NR_120559	101928823	Hs.126118	NR_120559	ENSG00000254968	LOC101928823	-	uncharacterized LOC101928823	ncRNA
837	chr11	31376273	31376583	+	0	NA	intron (NM_181807, intron 1 of 8)	intron (NM_181807, intron 1 of 8)	14929	NM_181807	341019	Hs.127405	NM_181807	ENSG00000170959	DCDC1	-	doublecortin domain containing 1	protein-coding
2015	chr15	47624468	47624514	+	0	NA	intron (NM_001198999, intron 1 of 19)	intron (NM_001198999, intron 1 of 19)	148088	NM_001198999	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding
6066	chr9	129183617	129183698	+	0	NA	intron (NM_033446, intron 6 of 9)	MIRc|SINE|MIR	-10874	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	non-protein coding RNA, repressor of NFAT	ncRNA
4521	chr5	123919428	123919696	+	0	NA	Intergenic	Intergenic	-145349	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
625	chr10	42357595	42363294	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	503049	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
149	chr1	59544157	59544224	+	0	NA	intron (NR_110626, intron 2 of 2)	MIRb|SINE|MIR	58042	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
3208	chr2	106357595	106357711	+	0	NA	Intergenic	MIRb|SINE|MIR	-3867	NM_003581	8440	Hs.529244	NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
3839	chr3	29107095	29107250	+	0	NA	Intergenic	Intergenic	215258	NR_109804	100873979	Hs.99391	NR_109804		RBMS3-AS3	-	RBMS3 antisense RNA 3	ncRNA
6398	chrY	13808449	13808647	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	724841	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
406	chr1	203621190	203621310	+	0	NA	intron (NM_001684, intron 1 of 20)	intron (NM_001684, intron 1 of 20)	25335	NM_001684	493	Hs.343522	NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
2289	chr16	48999399	48999532	+	0	NA	Intergenic	Intergenic	316277	NM_004352	869	Hs.458423	NM_004352	ENSG00000102924	CBLN1	-	cerebellin 1 precursor	protein-coding
4798	chr6	43894540	43894662	+	0	NA	intron (NR_024478, intron 1 of 1)	intron (NR_024478, intron 1 of 1)	35836	NR_024478	100132354	Hs.376232	NR_024478		LINC01512	HI-LNC77	long intergenic non-protein coding RNA 1512	ncRNA
3283	chr2	160372575	160372633	+	0	NA	intron (NM_001329857, intron 2 of 36)	intron (NM_001329857, intron 2 of 36)	-99201	NR_110588	643072	Hs.632541	NR_110587		LOC643072	-	uncharacterized LOC643072	ncRNA
2312	chr16	52504550	52504815	+	0	NA	intron (NM_001080430, intron 1 of 6)	intron (NM_001080430, intron 1 of 6)	76124	NM_001080430	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
19	chr1	726914	727033	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-12905	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
3096	chr2	89850075	89850149	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	738228	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
3637	chr21	10839131	10839221	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	151767	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
1030	chr11	117344637	117344916	+	0	NA	intron (NM_020693, intron 14 of 32)	intron (NM_020693, intron 14 of 32)	146205	NM_014956	22897	Hs.504009	NM_014956	ENSG00000110274	CEP164	NPHP15	centrosomal protein 164	protein-coding
365	chr1	182144628	182144872	+	0	NA	Intergenic	MIRb|SINE|MIR	-113903	NM_001009992	127665	Hs.684328	NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
2730	chr18	50319088	50319247	+	0	NA	intron (NM_005215, intron 2 of 28)	(CATTC)n|Simple_repeat|Simple_repeat	-444304	NR_130465	100616232		NR_130465	ENSG00000263872	MIR4528	-	microRNA 4528	ncRNA
763	chr11	12745334	12745861	+	0	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	49628	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
3255	chr2	146189138	146189260	+	0	NA	Intergenic	Intergenic	763665	NR_033870	401014	Hs.742290	NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
3332	chr2	184530074	184530431	+	0	NA	Intergenic	Intergenic	541169	NM_001287585	129401	Hs.180591	NM_138285	ENSG00000163002	NUP35	MP-44|MP44|NP44|NUP53	nucleoporin 35	protein-coding
4632	chr6	1724645	1724735	+	0	NA	intron (NM_001500, intron 9 of 10)	intron (NM_001500, intron 9 of 10)	114009	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
2021	chr15	50350872	50350872	+	0	NA	intron (NR_073597, intron 3 of 26)	intron (NR_073597, intron 3 of 26)	54641	NR_073598	79895	Hs.511311	NM_024837	ENSG00000104043	ATP8B4	ATPIM	ATPase phospholipid transporting 8B4 (putative)	protein-coding
5948	chr9	72653026	72653029	+	0	NA	Intergenic	Intergenic	-5470	NM_001347990	256691	Hs.547172	NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding
3430	chr2	234898629	234898859	+	0	NA	intron (NM_024080, intron 21 of 25)	intron (NM_024080, intron 21 of 25)	-60602	NM_006944	6694	Hs.444488	NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
4590	chr5	152501822	152502043	+	0	NA	Intergenic	Intergenic	-150023	NR_109877	101927134	Hs.531423	NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA
3318	chr2	175875870	175875931	+	0	NA	Intergenic	Intergenic	-5793	NR_038133	1123	Hs.380138	NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
5193	chr7	39123875	39124301	+	0	NA	intron (NM_001166018, intron 2 of 10)	intron (NM_001166018, intron 2 of 10)	-70921	NR_138047	100689074	Hs.675876	NR_138047		POU6F2-AS2	-	POU6F2 antisense RNA 2	ncRNA
570	chr10	38872025	38872197	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-117616	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
3123	chr2	89869081	89869673	+	0	NA	Intergenic	Intergenic	757493	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
1880	chr14	82955411	82955496	+	0	NA	Intergenic	Intergenic	-866048	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
5191	chr7	36647661	36647863	+	0	NA	intron (NM_001637, intron 11 of 20)	intron (NM_001637, intron 11 of 20)	-8036	NR_046764	100874264	Hs.690994	NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
3761	chr22	19104488	19104872	+	0	NA	intron (NM_005137, intron 1 of 9)	intron (NM_005137, intron 1 of 9)	5287	NR_033674	9993	Hs.517357	NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
252	chr1	115849025	115849344	+	0	NA	intron (NM_002506, intron 1 of 2)	intron (NM_002506, intron 1 of 2)	31673	NM_002506	4803	Hs.2561	NM_002506	ENSG00000134259	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor	protein-coding
4883	chr6	80507329	80507349	+	0	NA	Intergenic	Intergenic	14624	NR_131786	89758	Hs.288213	NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
4063	chr3	193440961	193441013	+	0	NA	Intergenic	MIR3|SINE|MIR	-95866	NR_046634	100873941	Hs.679364	NR_046634	ENSG00000224855	OPA1-AS1	-	OPA1 antisense RNA 1	ncRNA
3389	chr2	221175645	221175687	+	0	NA	Intergenic	UCON14|DNA?|DNA?	-404380	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	ncRNA
883	chr11	51581182	51581186	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	65902	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
4805	chr6	46850510	46850675	+	0	NA	intron (NM_001098518, intron 6 of 20)	Charlie17a|DNA|hAT-Charlie	-20616	NR_110658	101926962	Hs.680113	NR_110658		LOC101926962	-	uncharacterized LOC101926962	ncRNA
4610	chr5	158228498	158228791	+	0	NA	intron (NM_001324107, intron 8 of 15)	intron (NM_001324107, intron 8 of 15)	298126	NM_001324101	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
1998	chr15	39043138	39043488	+	0	NA	Intergenic	MIRb|SINE|MIR	54514	NM_207444	400359	Hs.448785	NM_207444	ENSG00000175779	C15orf53	-	chromosome 15 open reading frame 53	protein-coding
5387	chr7	107998991	107999186	+	0	NA	intron (NM_005010, intron 2 of 27)	intron (NM_005010, intron 2 of 27)	97753	NM_001193584	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
2930	chr2	5550372	5550688	+	0	NA	Intergenic	Intergenic	280720	NR_110580	102723818	Hs.128107	NR_110580		LINC01248	-	long intergenic non-protein coding RNA 1248	ncRNA
6058	chr9	126968600	126968800	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-51185	NM_001166167	10783	Hs.197071	NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
1367	chr12	117923665	117924276	+	0	NA	intron (NM_173598, intron 14 of 19)	intron (NM_173598, intron 14 of 19)	-124363	NM_001204218	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
6199	chrUn_gl000216	145598	145601	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
3825	chr3	15325939	15326330	+	0	NA	intron (NM_001018009, intron 3 of 8)	intron (NM_001018009, intron 3 of 8)	30443	NR_046084	100505696	Hs.745026	NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
5236	chr7	61083970	61083981	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1680459	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
1070	chr11	129716511	129716839	+	0	NA	intron (NM_001331210, intron 2 of 6)	L2a|LINE|L2	30999	NM_001331211	120224	Hs.504301	NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
3117	chr2	89867904	89867907	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	756021	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
3618	chr21	10807052	10807060	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	183887	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
3275	chr2	159111697	159111863	+	0	NA	intron (NM_138803, intron 9 of 13)	intron (NM_138803, intron 9 of 13)	88618	NR_038850	554201	Hs.570262	NR_038850	ENSG00000227480	CCDC148-AS1	-	CCDC148 antisense RNA 1	ncRNA
2463	chr17	34982684	34983069	+	0	NA	Intergenic	AluSx1|SINE|Alu	24851	NM_024864	79922	Hs.194864	NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
4332	chr4	140927169	140927192	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	148053	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
2493	chr17	55994440	55994549	+	0	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	-13744	NM_001292025	404093	Hs.46679	NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
105	chr1	42805709	42806165	+	0	NA	Intergenic	Intergenic	-4389	NM_001198850	22887	Hs.26023	NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
5976	chr9	87793717	87793879	+	0	NA	Intergenic	LTR78|LTR|ERV1	508506	NM_001018064	4915	Hs.494312	NM_006180	ENSG00000148053	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic receptor tyrosine kinase 2	protein-coding
4500	chr5	92298674	92299079	+	0	NA	Intergenic	Intergenic	608173	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
2380	chr16	80202014	80202389	+	0	NA	intron (NR_120307, intron 2 of 5)	intron (NR_120307, intron 2 of 5)	-372430	NM_001305017	83657	Hs.98849	NM_130897	ENSG00000168589	DYNLRB2	DNCL2B|DNLC2B|ROBLD2	dynein light chain roadblock-type 2	protein-coding
111	chr1	43905903	43906084	+	0	NA	intron (NM_015284, intron 50 of 70)	intron (NM_015284, intron 50 of 70)	-8217	NR_106793	102465440		NR_106793	ENSG00000274975	MIR6735	hsa-mir-6735	microRNA 6735	ncRNA
3549	chr20	29832000	29832054	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-13440	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
408	chr1	204282675	204283149	+	0	NA	intron (NM_014935, intron 1 of 22)	intron (NM_014935, intron 1 of 22)	46145	NM_014935	22874	Hs.253146	NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
6206	chrUn_gl000216	155021	155060	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
5410	chr7	115372285	115372560	+	0	NA	Intergenic	Intergenic	235945	NM_001244583	22797	Hs.125962	NM_012252	ENSG00000105967	TFEC	TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L	transcription factor EC	protein-coding
5038	chr6	134996597	134996812	+	0	NA	Intergenic	Intergenic	-135561	NR_125855	101928304	Hs.555076	NR_125855		LOC101928304	-	uncharacterized LOC101928304	ncRNA
4776	chr6	33846173	33846396	+	0	NA	Intergenic	Intergenic	18400	NR_038989	100507584	Hs.547104	NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
5517	chr7	149631517	149631517	+	0	NA	Intergenic	Charlie20a|DNA|hAT-Charlie	-60566	NR_027040	401431	Hs.556998	NM_001008745	ENSG00000204934	ATP6V0E2-AS1	-	ATP6V0E2 antisense RNA 1	ncRNA
3577	chr20	52226195	52226542	+	0	NA	intron (NR_134576, intron 1 of 2)	intron (NR_134576, intron 1 of 2)	1475	NR_134576	105372672	Hs.259350	NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
2777	chr18	63154511	63154671	+	0	NA	Intergenic	Intergenic	-262897	NM_033646	1005	Hs.541003	NM_004361	ENSG00000081138	CDH7	CDH7L1	cadherin 7	protein-coding
5679	chr8	82129995	82130154	+	0	NA	Intergenic	Intergenic	-62644	NM_001444	2171	Hs.408061	NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
559	chr10	38814722	38814753	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	97663	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
5655	chr8	70071133	70071205	+	0	NA	Intergenic	Intergenic	-54744	NR_039986	100505718	Hs.122386	NR_039986	ENSG00000253658	LINC01592	-	long intergenic non-protein coding RNA 1592	ncRNA
3601	chr21	10703186	10703268	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	287716	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
5301	chr7	69120048	69120183	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	56210	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
6236	chrUn_gl000225	196931	197261	+	0	NA	NA	(GAATG)n|Satellite|Satellite	NA	NA								
580	chr10	39076779	39076996	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	87160	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
4956	chr6	97488194	97488251	+	0	NA	intron (NM_001286254, intron 1 of 8)	intron (NM_001286254, intron 1 of 8)	30270	NM_001323261	114792	Hs.45056	NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch like family member 32	protein-coding
2800	chr18	75899021	75899515	+	0	NA	Intergenic	Intergenic	-193585	NR_104127	101927715	Hs.385670	NR_104127		LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
5818	chr8	142877250	142877622	+	0	NA	Intergenic	Intergenic	-9762	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
2523	chr17	68657884	68657933	+	0	NA	Intergenic	Intergenic	492232	NM_000891	3759	Hs.1547	NM_000891	ENSG00000123700	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	potassium voltage-gated channel subfamily J member 2	protein-coding
5103	chr7	2197061	2197337	+	0	NA	intron (NM_001013836, intron 10 of 18)	intron (NM_001013836, intron 10 of 18)	75384	NM_003550	8379	Hs.654838	NM_003550	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient like 1	protein-coding
4618	chr5	174890899	174891174	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-14465	NM_001322977	94081	Hs.369440	NM_022754	ENSG00000164466	SFXN1	TCC	sideroflexin 1	protein-coding
6458	chrY	13862156	13862320	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	671151	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3808	chr22	43843237	43843324	+	0	NA	intron (NM_001044370, intron 3 of 6)	intron (NM_001044370, intron 3 of 6)	35260	NM_001044370	758	Hs.159538	NM_001044370	ENSG00000186732	MPPED1	239AB|C22orf1|FAM1A	metallophosphoesterase domain containing 1	protein-coding
1257	chr12	97404538	97404798	+	0	NA	Intergenic	Intergenic	103424	NM_001135175	121441	Hs.270084	NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
31	chr1	8767442	8767675	+	0	NA	intron (NM_001042681, intron 1 of 22)	intron (NM_001042681, intron 1 of 22)	110141	NM_012102	473	Hs.463041	NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
4717	chr6	21748399	21748838	+	0	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	81943	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
4093	chr4	8147535	8147732	+	0	NA	intron (NM_001130083, intron 1 of 20)	intron (NM_001130083, intron 1 of 20)	12926	NM_001130083	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
2307	chr16	52503580	52503657	+	0	NA	intron (NM_001080430, intron 1 of 6)	(TAGA)n|Simple_repeat|Simple_repeat	77188	NM_001080430	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
2706	chr18	45743116	45743169	+	0	NA	intron (NM_001318841, intron 2 of 4)	intron (NM_001318841, intron 2 of 4)	-79462	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
5973	chr9	86064905	86065079	+	0	NA	intron (NM_001244959, intron 1 of 14)	intron (NM_001244959, intron 1 of 14)	17665	NM_001244960	257019	Hs.127535	NM_174938	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
4439	chr5	38540159	38540476	+	0	NA	intron (NM_002310, intron 1 of 19)	MIRc|SINE|MIR	16431	NM_001127671	3977	Hs.133421	NM_002310	ENSG00000113594	LIFR	CD118|LIF-R|SJS2|STWS|SWS	leukemia inhibitory factor receptor alpha	protein-coding
4160	chr4	49138394	49138448	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	149762	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
5444	chr7	129475583	129475818	+	0	NA	intron (NM_182697, intron 4 of 4)	intron (NM_182697, intron 4 of 4)	-60846	NR_029615	406959		NR_029615	ENSG00000207691	MIR183	MIRN183|miR-183|miRNA183	microRNA 183	ncRNA
3336	chr2	191333813	191334417	+	0	NA	intron (NM_017694, intron 3 of 7)	intron (NM_017694, intron 3 of 7)	61034	NM_017694	54842	Hs.418581	NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
5502	chr7	146332996	146333181	+	0	NA	intron (NM_014141, intron 1 of 23)	intron (NM_014141, intron 1 of 23)	461613	NR_110829	101928700	Hs.571218	NR_110829	ENSG00000236795	LOC101928700	-	uncharacterized LOC101928700	ncRNA
4629	chr6	1724363	1724393	+	0	NA	intron (NM_001500, intron 9 of 10)	intron (NM_001500, intron 9 of 10)	113697	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
2133	chr15	96369072	96369146	+	0	NA	Intergenic	Intergenic	392787	NR_027132	145820	Hs.652702	NR_027132	ENSG00000259134	LINC00924	-	long intergenic non-protein coding RNA 924	ncRNA
5104	chr7	2197338	2197519	+	0	NA	intron (NM_001013836, intron 10 of 18)	intron (NM_001013836, intron 10 of 18)	75155	NM_003550	8379	Hs.654838	NM_003550	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient like 1	protein-coding
968	chr11	92601972	92601987	+	0	NA	intron (NM_001008781, intron 21 of 24)	intron (NM_001008781, intron 21 of 24)	46815	NR_135091	105369431	Hs.532389	NR_135091		LOC105369431	-	uncharacterized LOC105369431	ncRNA
675	chr10	72344834	72344884	+	0	NA	Intergenic	Intergenic	17672	NM_001083116	5551	Hs.2200	NM_005041	ENSG00000180644	PRF1	FLH2|HPLH2|P1|PFN1|PFP	perforin 1	protein-coding
4969	chr6	105159176	105159209	+	0	NA	Intergenic	Intergenic	148229	NM_001321084	57531	Hs.434340	NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
4722	chr6	21749847	21750129	+	0	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	83313	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
431	chr1	208376565	208376570	+	0	NA	intron (NM_025179, intron 3 of 31)	intron (NM_025179, intron 3 of 31)	41098	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
3541	chr20	29822944	29822953	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-22519	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
382	chr1	184874895	184874899	+	0	NA	intron (NM_052966, intron 1 of 13)	intron (NM_052966, intron 1 of 13)	68821	NM_052966	116496	Hs.518662	NM_052966	ENSG00000135842	FAM129A	C1orf24|GIG39|NIBAN	family with sequence similarity 129 member A	protein-coding
3487	chr20	14074665	14074834	+	0	NA	intron (NM_080676, intron 3 of 16)	L2c|LINE|L2	98603	NM_080676	140733	Hs.661576	NM_080676	ENSG00000172264	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
2846	chr19	32965196	32965377	+	0	NA	intron (NM_207325, intron 16 of 18)	intron (NM_207325, intron 16 of 18)	68264	NM_207325	147991	Hs.194392	NM_207325	ENSG00000178904	DPY19L3	-	dpy-19 like 3 (C. elegans)	protein-coding
4208	chr4	49651637	49651656	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	662987	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
4729	chr6	21847903	21848180	+	0	NA	intron (NR_015410, intron 4 of 11)	intron (NR_015410, intron 4 of 11)	181366	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
4329	chr4	140926763	140926973	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	148365	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
3863	chr3	72712960	72712980	+	0	NA	intron (NR_135531, intron 1 of 1)	MamRep1894|DNA|hAT	430	NR_135531	105377162	Hs.123457	NR_135531		LOC105377162	-	uncharacterized LOC105377162	ncRNA
139	chr1	56997237	56997526	+	0	NA	intron (NM_003713, intron 2 of 5)	MIRb|SINE|MIR	47876	NM_003713	8613	Hs.405156	NM_003713	ENSG00000162407	PLPP3	Dri42|LPP3|PAP2B|PPAP2B|VCIP	phospholipid phosphatase 3	protein-coding
129	chr1	50741789	50741918	+	0	NA	Intergenic	MIRc|SINE|MIR	147266	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
6077	chr9	140222399	140222511	+	0	NA	intron (NM_017820, intron 17 of 21)	intron (NM_017820, intron 17 of 21)	-25752	NM_001004354	441478	Hs.535075	NM_001004354	ENSG00000198435	NRARP	-	NOTCH-regulated ankyrin repeat protein	protein-coding
4662	chr6	15353173	15353368	+	0	NA	intron (NM_001267040, intron 1 of 17)	L1MB8|LINE|L1	104184	NM_001267040	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
6033	chr9	111574612	111574696	+	0	NA	Intergenic	Intergenic	43621	NM_006686	10880	Hs.534390	NM_006686	ENSG00000148156	ACTL7B	Tact1	actin like 7B	protein-coding
3008	chr2	48960040	48960161	+	0	NA	intron (NM_000233, intron 1 of 10)	UCON29|DNA|PiggyBac?	22780	NM_000233	3973	Hs.468490	NM_000233	ENSG00000138039	LHCGR	HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5	luteinizing hormone/choriogonadotropin receptor	protein-coding
926	chr11	62609385	62609457	+	0	NA	Intergenic	Intergenic	-1793	NM_018093	54663	Hs.654620	NM_018093	ENSG00000133316	WDR74	-	WD repeat domain 74	protein-coding
4377	chr4	185653395	185653647	+	0	NA	intron (NM_024629, intron 1 of 12)	MER5A|DNA|hAT-Charlie	1765	NM_024629	79682	Hs.575032	NM_024629	ENSG00000151725	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
1246	chr12	94221819	94221834	+	0	NA	intron (NM_001320100, intron 2 of 2)	L1ME1|LINE|L1	-90227	NR_110092	101928731	Hs.659971	NR_110092	ENSG00000258274	LOC101928731	-	uncharacterized LOC101928731	ncRNA
1083	chr12	2361194	2361323	+	0	NA	intron (NM_001129830, intron 3 of 47)	intron (NM_001129830, intron 3 of 47)	-17684	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
4000	chr3	170910341	170910439	+	0	NA	intron (NM_001161560, intron 5 of 31)	intron (NM_001161560, intron 5 of 31)	-85842	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
1293	chr12	103766803	103767062	+	0	NA	intron (NM_001099336, intron 3 of 5)	intron (NM_001099336, intron 3 of 5)	122856	NR_103526	374470	Hs.534649	NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
6137	chrUn_gl000216	9477	9496	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
3024	chr2	54214598	54214904	+	0	NA	intron (NM_001320587, intron 2 of 5)	L1MD|LINE|L1	16511	NM_001320586	98	Hs.516173	NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
1792	chr14	68555966	68556290	+	0	NA	intron (NM_001321809, intron 7 of 11)	intron (NM_001321809, intron 7 of 11)	265819	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
662	chr10	64026407	64026602	+	0	NA	intron (NM_001282941, intron 1 of 4)	MIRb|SINE|MIR	2118	NM_145307	219790	Hs.58559	NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
168	chr1	67008006	67008426	+	0	NA	intron (NM_032291, intron 1 of 24)	MER44D|DNA|TcMar-Tigger	8577	NM_032291	84251	Hs.132121	NM_032291	ENSG00000118473	SGIP1	-	SH3 domain GRB2 like endophilin interacting protein 1	protein-coding
6180	chrUn_gl000216	66375	66532	+	0	NA	NA	Intergenic	NA	NA								
4789	chr6	38078563	38078859	+	0	NA	intron (NM_021943, intron 4 of 5)	intron (NM_021943, intron 4 of 5)	291404	NM_021943	60685	Hs.36959	NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
1518	chr13	93495930	93496200	+	0	NA	intron (NM_004466, intron 7 of 7)	intron (NM_004466, intron 7 of 7)	-122198	NR_046520	100873969	Hs.577863	NR_046520	ENSG00000235984	GPC5-AS1	-	GPC5 antisense RNA 1	ncRNA
3447	chr2	238578423	238578623	+	0	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	-22284	NM_004735	9208	Hs.471779	NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
3444	chr2	236889202	236889290	+	0	NA	intron (NM_001037131, intron 13 of 17)	intron (NM_001037131, intron 13 of 17)	187406	NM_001485	2637	Hs.184945	NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
178	chr1	75430130	75430250	+	0	NA	Intergenic	Intergenic	-163929	NM_001001933	431707	Hs.403934	NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
3156	chr2	91595564	91596529	+	0	NA	Intergenic	HSATII|Satellite|Satellite	251929	NR_027238	654342	Hs.469287	NR_027238		LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
2728	chr18	49839175	49839215	+	0	NA	Intergenic	Plat_L3|LINE|CR1	-27347	NM_005215	1630	Hs.162025	NM_005215	ENSG00000187323	DCC	CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1	DCC netrin 1 receptor	protein-coding
3992	chr3	159601119	159601696	+	0	NA	intron (NM_001197113, intron 6 of 10)	intron (NM_001197113, intron 6 of 10)	43757	NM_001197109	29970	Hs.134665	NM_014575	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
3439	chr2	236877292	236877499	+	0	NA	intron (NM_001037131, intron 13 of 17)	intron (NM_001037131, intron 13 of 17)	199257	NM_001485	2637	Hs.184945	NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
124	chr1	50604709	50605478	+	0	NA	intron (NM_001324215, intron 1 of 5)	intron (NM_001324215, intron 1 of 5)	29805	NM_001324215	1996	Hs.213050	NM_021952	ENSG00000162374	ELAVL4	HUD|PNEM	ELAV like RNA binding protein 4	protein-coding
6267	chrX	20381314	20381421	+	0	NA	Intergenic	Intergenic	-96617	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
1429	chr13	22496586	22496820	+	0	NA	Intergenic	Intergenic	-44404	NR_047040	100874182	Hs.148951	NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
4259	chr4	82729563	82729884	+	0	NA	Intergenic	Intergenic	-336641	NM_152545	153020	Hs.591696	NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
5702	chr8	93169794	93169831	+	0	NA	Intergenic	L2a|LINE|L2	9927	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
1974	chr14	100489452	100489489	+	0	NA	intron (NM_001330221, intron 1 of 13)	intron (NM_001330221, intron 1 of 13)	-42281	NM_016337	51466	Hs.125867	NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
2536	chr17	75734198	75734489	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-9702	NR_104134	100132174	Hs.640110	NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
5856	chr9	8096258	8096331	+	0	NA	Intergenic	Intergenic	-296488	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
4988	chr6	107476000	107476418	+	0	NA	intron (NM_020381, intron 7 of 7)	intron (NM_020381, intron 7 of 7)	-40573	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
4350	chr4	154064879	154065198	+	0	NA	Intergenic	Intergenic	-9232	NM_001130067	23321	Hs.435711	NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
3611	chr21	10795457	10795608	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	195411	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2483	chr17	46550053	46550417	+	0	NA	Intergenic	Intergenic	28040	NR_110804	101927166	Hs.149244	NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
1374	chr12	118975370	118975435	+	0	NA	Intergenic	Intergenic	161044	NM_022491	64426	Hs.416630	NM_022491	ENSG00000111707	SUDS3	SAP45|SDS3	SDS3 homolog, SIN3A corepressor complex component	protein-coding
6098	chr9_gl000199_random	42584	42909	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
2807	chr19	5962424	5962449	+	0	NA	intron (NM_003624, intron 1 of 16)	L2a|LINE|L2	15884	NM_001300865	8498	Hs.531752	NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
2303	chr16	52299372	52299379	+	0	NA	intron (NR_135281, intron 1 of 2)	intron (NR_135281, intron 1 of 2)	6899	NR_135281	283854	Hs.266768	NR_135281	ENSG00000260887	CASC22	LINC01373|LincRNA-ENST00000515084|TCONS_00024290	cancer susceptibility candidate 22 (non-protein coding)	ncRNA
5672	chr8	81080515	81080623	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	2866	NR_105037	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
2259	chr16	34021832	34021948	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-59387	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
2212	chr16	33865211	33865394	+	0	NA	Intergenic	(GAATG)n|Simple_repeat|Simple_repeat	97201	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
716	chr10	98308185	98308381	+	0	NA	intron (NM_020123, intron 7 of 14)	AluSx1|SINE|Alu	-34600	NM_012465	7093	Hs.154296	NM_012465	ENSG00000095587	TLL2	-	tolloid like 2	protein-coding
1886	chr14	83290923	83291197	+	0	NA	Intergenic	L3|LINE|CR1	-1201655	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
1972	chr14	100489267	100489301	+	0	NA	intron (NM_001330221, intron 1 of 13)	intron (NM_001330221, intron 1 of 13)	-42467	NM_016337	51466	Hs.125867	NM_016337	ENSG00000196405	EVL	RNB6	Enah/Vasp-like	protein-coding
5294	chr7	69118028	69118318	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	54268	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
940	chr11	72019943	72020071	+	0	NA	intron (NM_030813, intron 8 of 16)	intron (NM_030813, intron 8 of 16)	-64787	NM_005169	401	Hs.731115	NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2a	protein-coding
685	chr10	77467877	77468067	+	0	NA	intron (NR_131178, intron 1 of 7)	intron (NR_131178, intron 1 of 7)	-4241	NR_132791	105378367	Hs.464836	NR_132791		LOC105378367	-	uncharacterized LOC105378367	ncRNA
5607	chr8	43095428	43095484	+	0	NA	Intergenic	SAR|Satellite|Satellite	-52129	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
4169	chr4	49143331	49145401	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	155707	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
21	chr1	7278163	7278316	+	0	NA	intron (NM_015215, intron 4 of 22)	L1MC4|LINE|L1	432855	NR_038934	23261	Hs.397705	NM_015215	ENSG00000171735	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
5313	chr7	69345613	69346370	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	282086	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
4862	chr6	61913595	61913637	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-370392	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
523	chr10	1016665	1016956	+	0	NA	Intergenic	Intergenic	-17539	NM_012341	23560	Hs.215766	NM_012341	ENSG00000107937	GTPBP4	CRFG|NGB|NOG1	GTP binding protein 4	protein-coding
4360	chr4	166319776	166319826	+	0	NA	intron (NM_001873, intron 1 of 8)	intron (NM_001873, intron 1 of 8)	12407	NR_030304	693163		NR_030304	ENSG00000207559	MIR578	MIRN578|hsa-mir-578	microRNA 578	ncRNA
3823	chr3	2004627	2004761	+	0	NA	Intergenic	Intergenic	-135856	NM_175607	152330	Hs.298705	NM_175607	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
2377	chr16	79321583	79321668	+	0	NA	Intergenic	(TTCA)n|Simple_repeat|Simple_repeat	312997	NM_005360	4094	Hs.134859	NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
3975	chr3	139187894	139188279	+	0	NA	intron (NM_004164, intron 1 of 3)	intron (NM_004164, intron 1 of 3)	7266	NM_004164	5948	Hs.655516	NM_004164	ENSG00000114113	RBP2	CRABP-II|CRBP2|CRBPII|RBPC2	retinol binding protein 2	protein-coding
6344	chrX	150993657	150993878	+	0	NA	Intergenic	Intergenic	85788	NR_136578	105373368	Hs.256904	NR_136578		LOC105373368	-	uncharacterized LOC105373368	ncRNA
1460	chr13	37478458	37478588	+	0	NA	intron (NM_005905, intron 1 of 5)	intron (NM_005905, intron 1 of 5)	15886	NM_001127217	4093	Hs.123119	NM_005905	ENSG00000120693	SMAD9	MADH6|MADH9|PPH2|SMAD8|SMAD8/9|SMAD8A|SMAD8B	SMAD family member 9	protein-coding
453	chr1	212740768	212741058	+	0	NA	intron (NM_001030287, intron 1 of 3)	intron (NM_001030287, intron 1 of 3)	2237	NM_001030287	467	Hs.460	NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
2500	chr17	57046337	57046506	+	0	NA	intron (NM_014906, intron 3 of 6)	intron (NM_014906, intron 3 of 6)	137861	NM_001320988	4591	Hs.579079	NM_015294	ENSG00000108395	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
3937	chr3	123937628	123937746	+	0	NA	intron (NM_001024660, intron 1 of 59)	intron (NM_001024660, intron 1 of 59)	85911	NR_049798	100847021		NR_049798	ENSG00000266383	MIR5002	-	microRNA 5002	ncRNA
1202	chr12	63151498	63151621	+	0	NA	intron (NM_020700, intron 4 of 9)	intron (NM_020700, intron 4 of 9)	154093	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i|let-7i	microRNA let-7i	ncRNA
3162	chr2	91614046	91614979	+	0	NA	Intergenic	HSATII|Satellite|Satellite	233463	NR_027238	654342	Hs.469287	NR_027238		LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
3895	chr3	105369527	105370104	+	0	NA	Intergenic	Intergenic	216620	NM_001321813	868	Hs.430589	NM_170662	ENSG00000114423	CBLB	Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
3303	chr2	169588617	169588875	+	0	NA	intron (NM_203463, intron 8 of 9)	L2c|LINE|L2	54193	NR_045787	100861402	Hs.506829	NR_045786	ENSG00000227617	CERS6-AS1	-	CERS6 antisense RNA 1	ncRNA
351	chr1	169453491	169454178	+	0	NA	intron (NM_006996, intron 1 of 5)	intron (NM_006996, intron 1 of 5)	1374	NM_006996	10560	Hs.30246	NM_006996	ENSG00000117479	SLC19A2	TC1|THMD1|THT1|THTR1|TRMA	solute carrier family 19 member 2	protein-coding
2838	chr19	29799736	29799943	+	0	NA	intron (NR_040029, intron 9 of 9)	intron (NR_040029, intron 9 of 9)	-95703	NM_006003	7386	Hs.743307	NM_006003	ENSG00000169021	UQCRFS1	RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
595	chr10	39094010	39094017	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	104286	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
6337	chrX	131727723	131727849	+	0	NA	Intergenic	MIR3|SINE|MIR	-73884	NR_046691	100874102	Hs.619341	NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
2926	chr2	5265440	5265568	+	0	NA	Intergenic	Intergenic	-561692	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
1854	chr14	77670823	77670971	+	0	NA	intron (NM_020431, intron 1 of 23)	L2b|LINE|L2	22795	NM_020431	57156	Hs.22452	NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|hsCSC1	transmembrane protein 63C	protein-coding
1498	chr13	73939832	73940200	+	0	NA	Intergenic	Intergenic	-198365	NR_047009	100874155	Hs.672679	NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
835	chr11	27195424	27195624	+	0	NA	intron (NR_125766, intron 2 of 4)	intron (NR_125766, intron 2 of 4)	44791	NR_125768	103695435	Hs.196133	NR_125766	ENSG00000254560	BBOX1-AS1	-	BBOX1 antisense RNA 1	ncRNA
5874	chr9	13979959	13980159	+	0	NA	Intergenic	Intergenic	52089	NR_038194	100113404	Hs.149786	NR_038194	ENSG00000205636	LINC00583	C9orf146	long intergenic non-protein coding RNA 583	ncRNA
1267	chr12	98321188	98321305	+	0	NA	Intergenic	Intergenic	11653	NR_039716	100616287		NR_039716	ENSG00000265861	MIR4495	-	microRNA 4495	ncRNA
4620	chr5	175610510	175610743	+	0	NA	intron (NR_036494, intron 4 of 25)	intron (NR_036494, intron 4 of 25)	15672	NR_036494	643201	Hs.390285	NR_036494	ENSG00000248596	LOC643201	-	centrosomal protein 192kDa pseudogene	pseudo
4015	chr3	176447864	176448120	+	0	NA	Intergenic	MIRc|SINE|MIR	86797	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
113	chr1	48115793	48115949	+	0	NA	Intergenic	MER5C1|DNA|hAT-Charlie	-212882	NR_126355	102724077	Hs.159718	NR_126355		LINC01389	-	long intergenic non-protein coding RNA 1389	ncRNA
901	chr11	51589341	51589543	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	74160	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
2191	chr16	22000559	22000656	+	0	NA	intron (NM_173806, intron 1 of 2)	intron (NM_173806, intron 1 of 2)	11824	NM_173806	255762	Hs.98244	NM_173806	ENSG00000155714	PDZD9	C16orf65	PDZ domain containing 9	protein-coding
5487	chr7	140006753	140006787	+	0	NA	Intergenic	L3b|LINE|CR1	91580	NM_001287498	84255	Hs.446021	NM_032295	ENSG00000157800	SLC37A3	-	solute carrier family 37 member 3	protein-coding
6388	chrY	13688133	13688147	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	845249	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1056	chr11	126975962	126976063	+	0	NA	Intergenic	Intergenic	39115	NR_120578	101929473	Hs.737523	NR_120578	ENSG00000255087	LOC101929473	-	uncharacterized LOC101929473	ncRNA
3664	chr21	11186939	11186971	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-88018	NM_001187	574	Hs.545789	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
3108	chr2	89864927	89865138	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	753148	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
6049	chr9	120162581	120162684	+	0	NA	intron (NM_014010, intron 1 of 21)	intron (NM_014010, intron 1 of 21)	14685	NM_014010	23245	Hs.601562	NM_014010	ENSG00000148219	ASTN2	bA67K19.1	astrotactin 2	protein-coding
4365	chr4	166381493	166381692	+	0	NA	intron (NM_001873, intron 1 of 8)	intron (NM_001873, intron 1 of 8)	74198	NR_030304	693163		NR_030304	ENSG00000207559	MIR578	MIRN578|hsa-mir-578	microRNA 578	ncRNA
4285	chr4	100675748	100675897	+	0	NA	Intergenic	Intergenic	-62159	NM_014395	27071	Hs.436271	NM_014395	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein-coding
5066	chr6	153529641	153530000	+	0	NA	Intergenic	Intergenic	-77431	NM_012419	26575	Hs.166313	NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G-protein signaling 17	protein-coding
2753	chr18	55565982	55565987	+	0	NA	Intergenic	Intergenic	-95657	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
1473	chr13	43842822	43842937	+	0	NA	intron (NM_017993, intron 13 of 16)	intron (NM_017993, intron 13 of 16)	155578	NR_047013	100874159	Hs.633241	NR_047013		LINC00400	-	long intergenic non-protein coding RNA 400	ncRNA
881	chr11	51579973	51580011	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	64710	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
2461	chr17	32701911	32702086	+	0	NA	Intergenic	L2a|LINE|L2	-11746	NM_002981	6346	Hs.72918	NM_002981	ENSG00000108702	CCL1	I-309|P500|SCYA1|SISe|TCA3	C-C motif chemokine ligand 1	protein-coding
3186	chr2	97600547	97600622	+	0	NA	intron (NM_001122646, intron 8 of 16)	intron (NM_001122646, intron 8 of 16)	15741	NR_110209	101927053	Hs.677537	NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
405	chr1	203621176	203621189	+	0	NA	intron (NM_001684, intron 1 of 20)	AluSx1|SINE|Alu	25267	NM_001684	493	Hs.343522	NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
507	chr1	245179924	245179963	+	0	NA	intron (NM_001290327, intron 2 of 7)	L2a|LINE|L2	-45772	NR_111907	101928068	Hs.134857	NR_111907		LOC101928068	-	uncharacterized LOC101928068	ncRNA
6092	chr9_gl000199_random	34259	35087	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
6110	chrUn_gl000212	41276	41290	+	0	NA	intron (NR_027278, intron 1 of 7)	AluSc8|SINE|Alu	17234	NR_027278	26080	Hs.448583	NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
3843	chr3	29197890	29198214	+	0	NA	Intergenic	Intergenic	124378	NR_109804	100873979	Hs.99391	NR_109804		RBMS3-AS3	-	RBMS3 antisense RNA 3	ncRNA
1734	chr14	57484939	57484961	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	205049	NR_029385	100309464	Hs.637962	NR_029385	ENSG00000248550	OTX2-AS1	OTX2OS1	OTX2 antisense RNA 1 (head to head)	ncRNA
3565	chr20	42646838	42646991	+	0	NA	intron (NM_001098798, intron 3 of 7)	intron (NM_001098798, intron 3 of 7)	72378	NM_001098798	84969	Hs.26608	NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
3230	chr2	123428786	123428853	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	915698	NR_048557	7247	Hs.75066	NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
1258	chr12	97562867	97563192	+	0	NA	Intergenic	Intergenic	261785	NM_001135175	121441	Hs.270084	NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
4030	chr3	177307893	177308043	+	0	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	148259	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
2313	chr16	52504816	52504874	+	0	NA	intron (NM_001080430, intron 1 of 6)	intron (NM_001080430, intron 1 of 6)	75961	NM_001080430	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
392	chr1	202026409	202026705	+	0	NA	Intergenic	Intergenic	46867	NM_001114309	1999	Hs.603657	NM_004433	ENSG00000163435	ELF3	EPR-1|ERT|ESE-1|ESX	E74 like ETS transcription factor 3	protein-coding
3653	chr21	10856038	10856183	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	134833	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2242	chr16	33899671	33899715	+	0	NA	Intergenic	AluYh9|SINE|Alu	62810	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
5463	chr7	131198171	131198299	+	0	NA	intron (NM_001018111, intron 1 of 8)	intron (NM_001018111, intron 1 of 8)	43141	NM_005397	5420	Hs.744213	NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin like	protein-coding
5530	chr8	3048233	3048404	+	0	NA	intron (NM_033225, intron 33 of 69)	L1MB1|LINE|L1	-462327	NR_125425	101927815	Hs.571467	NR_125423	ENSG00000254319	LOC101927815	-	uncharacterized LOC101927815	ncRNA
2254	chr16	33974800	33974827	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-12310	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
3354	chr2	207095122	207095571	+	0	NA	intron (NR_104359, intron 1 of 5)	LTR88c|LTR|Gypsy?	-12575	NM_005279	2825	Hs.184907	NM_005279	ENSG00000183671	GPR1	-	G protein-coupled receptor 1	protein-coding
813	chr11	20510228	20510288	+	0	NA	intron (NM_005788, intron 13 of 15)	intron (NM_005788, intron 13 of 15)	101182	NM_005788	10196	Hs.152337	NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
2014	chr15	47624370	47624467	+	0	NA	intron (NM_001198999, intron 1 of 19)	intron (NM_001198999, intron 1 of 19)	148015	NM_001198999	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding
644	chr10	42794870	42794985	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	68566	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
2477	chr17	45270378	45270531	+	0	NA	Intergenic	Intergenic	-3776	NM_001256	996	Hs.463295	NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
5140	chr7	14428247	14428888	+	0	NA	intron (NM_145695, intron 20 of 23)	intron (NM_145695, intron 20 of 23)	-397517	NM_001163148	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding
3360	chr2	210337249	210337295	+	0	NA	intron (NM_001039538, intron 1 of 14)	intron (NM_001039538, intron 1 of 14)	48501	NM_001039538	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding
1820	chr14	70564147	70564270	+	0	NA	intron (NM_033262, intron 2 of 7)	MIR|SINE|MIR	-17274	NM_001130417	6547	Hs.337696	NM_033262	ENSG00000100678	SLC8A3	NCX3	solute carrier family 8 member A3	protein-coding
5308	chr7	69288326	69288485	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	224500	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
5182	chr7	30265703	30265753	+	0	NA	Intergenic	Intergenic	-58195	NM_147128	223082	Hs.263912	NM_147128	ENSG00000180233	ZNRF2	RNF202	zinc and ring finger 2	protein-coding
2110	chr15	76692158	76692256	+	0	NA	intron (NM_001145923, intron 27 of 31)	AluSx1|SINE|Alu	63142	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
5275	chr7	64954301	64954315	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	115596	NM_007139	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
1342	chr12	114427352	114427621	+	0	NA	Intergenic	Intergenic	-23310	NM_001146699	9904	Hs.7482	NM_016196	ENSG00000122965	RBM19	-	RNA binding motif protein 19	protein-coding
4359	chr4	166319539	166319775	+	0	NA	intron (NM_001873, intron 1 of 8)	intron (NM_001873, intron 1 of 8)	12263	NR_030304	693163		NR_030304	ENSG00000207559	MIR578	MIRN578|hsa-mir-578	microRNA 578	ncRNA
4185	chr4	49633222	49633267	+	0	NA	Intergenic	L1M1|LINE|L1	644585	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
2457	chr17	30954129	30954312	+	0	NA	intron (NM_001303279, intron 20 of 21)	intron (NM_001303279, intron 20 of 21)	140115	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
1968	chr14	99264592	99265114	+	0	NA	Intergenic	Intergenic	86903	NM_001346978	283598	Hs.448754	NM_182560	ENSG00000176605	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
1802	chr14	68846310	68846513	+	0	NA	intron (NM_001321809, intron 8 of 11)	intron (NM_001321809, intron 8 of 11)	249093	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
2775	chr18	60932140	60932528	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	54279	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding
4065	chr3	193441165	193441533	+	0	NA	Intergenic	Intergenic	-96228	NR_046634	100873941	Hs.679364	NR_046634	ENSG00000224855	OPA1-AS1	-	OPA1 antisense RNA 1	ncRNA
4009	chr3	174905252	174905443	+	0	NA	intron (NM_207015, intron 2 of 13)	intron (NM_207015, intron 2 of 13)	-72315	NR_046390	100862679	Hs.148810	NR_046390	ENSG00000230292	NAALADL2-AS3	-	NAALADL2 antisense RNA 3	ncRNA
5660	chr8	73522355	73522512	+	0	NA	intron (NM_004770, intron 2 of 2)	intron (NM_004770, intron 2 of 2)	72807	NM_004770	9312	Hs.661102	NM_004770	ENSG00000182674	KCNB2	KV2.2	potassium voltage-gated channel subfamily B member 2	protein-coding
2273	chr16	46411713	46414601	+	0	NA	Intergenic	Intergenic	189852	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
3476	chr20	11829880	11830005	+	0	NA	intron (NR_110635, intron 1 of 1)	intron (NR_110635, intron 1 of 1)	21421	NR_110635	728450	Hs.560990	NR_110635	ENSG00000228422	LINC00687	C20orf61|dJ1012F16.1	long intergenic non-protein coding RNA 687	ncRNA
791	chr11	15764586	15765079	+	0	NA	Intergenic	Intergenic	99401	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
3330	chr2	183533875	183533886	+	0	NA	Intergenic	Intergenic	-46888	NR_073365	54431	Hs.516632	NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
1355	chr12	116561710	116561745	+	0	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	24732	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
3640	chr21	10843351	10843390	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	147573	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2231	chr16	33895630	33895636	+	0	NA	Intergenic	HSATII|Satellite|Satellite	66870	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
5904	chr9	66834217	66834641	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-88538	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
3617	chr21	10806958	10807051	+	0	NA	Intergenic	Intergenic	183939	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
3231	chr2	125300458	125300600	+	0	NA	intron (NM_130773, intron 10 of 23)	intron (NM_130773, intron 10 of 23)	517665	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein like 5	protein-coding
3095	chr2	89830939	89830950	+	0	NA	Intergenic	HSATII|Satellite|Satellite	719060	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
916	chr11	61716623	61716801	+	0	NA	promoter-TSS (NR_134580)	promoter-TSS (NR_134580)	-644	NM_001300787	7439	Hs.524910	NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|RP50|TU15B|VMD2	bestrophin 1	protein-coding
2043	chr15	59879241	59879381	+	0	NA	Intergenic	Intergenic	-24671	NM_004751	9245	Hs.194710	NM_004751	ENSG00000140297	GCNT3	C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding
3646	chr21	10845189	10845196	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	145751	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
4857	chr6	61913133	61913202	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-370841	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
4828	chr6	53611369	53611655	+	0	NA	Intergenic	MIRb|SINE|MIR	-48266	NM_018214	55227	Hs.606493	NM_018214	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
329	chr1	155904201	155904377	+	0	NA	promoter-TSS (NM_014949)	promoter-TSS (NM_014949)	-56	NM_014949	22889	Hs.24656	NM_014949	ENSG00000132680	KIAA0907	BLOM7|SNORA80EHG	KIAA0907	protein-coding
525	chr10	14690339	14690595	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-44050	NM_001282696	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
4476	chr5	71420387	71420543	+	0	NA	intron (NM_005909, intron 2 of 6)	intron (NM_005909, intron 2 of 6)	17370	NM_005909	4131	Hs.335079	NM_005909	ENSG00000131711	MAP1B	FUTSCH|MAP5|PPP1R102	microtubule associated protein 1B	protein-coding
27	chr1	8766852	8767022	+	0	NA	intron (NM_001042681, intron 1 of 22)	intron (NM_001042681, intron 1 of 22)	110762	NM_012102	473	Hs.463041	NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
787	chr11	15735992	15736195	+	0	NA	Intergenic	L2a|LINE|L2	70662	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
2331	chr16	53984861	53985049	+	0	NA	intron (NM_001080432, intron 8 of 8)	intron (NM_001080432, intron 8 of 8)	-88350	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1	ncRNA
1902	chr14	88818427	88818738	+	0	NA	Intergenic	Intergenic	-25326	NM_021161	54207	Hs.560255	NM_021161	ENSG00000100433	KCNK10	K2p10.1|PPP1R97|TREK-2|TREK2	potassium two pore domain channel subfamily K member 10	protein-coding
1561	chr13	101297004	101297196	+	0	NA	intron (NM_032813, intron 6 of 18)	AluSg|SINE|Alu	30089	NM_032813	84899	Hs.190983	NM_032813	ENSG00000125247	TMTC4	-	transmembrane and tetratricopeptide repeat containing 4	protein-coding
3909	chr3	111761758	111761907	+	0	NA	intron (NM_001042575, intron 2 of 15)	intron (NM_001042575, intron 2 of 15)	3367	NR_026734	344805	Hs.435490	NM_001042575	ENSG00000176040	TMPRSS7	-	transmembrane protease, serine 7	protein-coding
5255	chr7	61794205	61794795	+	0	NA	Intergenic	HSATII|Satellite|Satellite	969934	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
5216	chr7	57554655	57554659	+	0	NA	Intergenic	HSATII|Satellite|Satellite	44774	NM_001159279	441234	Hs.533121	NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
1866	chr14	79436962	79437144	+	0	NA	intron (NM_001330195, intron 14 of 20)	intron (NM_001330195, intron 14 of 20)	-229272	NR_135159	105370586		NR_135159	ENSG00000258419	LOC105370586	-	uncharacterized LOC105370586	ncRNA
6316	chrX	61870763	61870824	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	700425	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
2001	chr15	39654991	39655139	+	0	NA	Intergenic	Intergenic	112195	NM_001302797	400360	Hs.376109	NM_207445		C15orf54	-	chromosome 15 open reading frame 54	ncRNA
4394	chr5	2734160	2734569	+	0	NA	Intergenic	Intergenic	17405	NM_001134222	153572	Hs.282089	NM_033267	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
3736	chr22	16851038	16851045	+	0	NA	Intergenic	HSATII|Satellite|Satellite	222659	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
3731	chr22	16850315	16850319	+	0	NA	Intergenic	HSATII|Satellite|Satellite	223383	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
3216	chr2	109816066	109816308	+	0	NA	intron (NM_001099289, intron 1 of 9)	(GAATG)n|Satellite|Satellite	-58143	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
1310	chr12	105803642	105803696	+	0	NA	Intergenic	Intergenic	79255	NM_001145199	387882	Hs.368938	NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
5901	chr9	66833618	66833643	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-89337	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
3459	chr20	7683826	7684056	+	0	NA	Intergenic	Intergenic	237152	NM_017545	54363	Hs.193640	NM_017545	ENSG00000101323	HAO1	GOX|GOX1|HAOX1	hydroxyacid oxidase 1	protein-coding
2115	chr15	77767604	77768046	+	0	NA	intron (NM_018200, intron 7 of 10)	intron (NM_018200, intron 7 of 10)	-50112	NR_135692	101929457	Hs.637111	NR_135692	ENSG00000259362	LOC101929457	-	uncharacterized LOC101929457	ncRNA
4703	chr6	21115436	21115813	+	0	NA	intron (NM_017774, intron 13 of 15)	intron (NM_017774, intron 13 of 15)	396499	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
4357	chr4	157736777	157737397	+	0	NA	intron (NM_016205, intron 2 of 5)	intron (NM_016205, intron 2 of 5)	155459	NM_016205	56034	Hs.570855	NM_016205	ENSG00000145431	PDGFC	FALLOTEIN|SCDGF	platelet derived growth factor C	protein-coding
5796	chr8	125699927	125700171	+	0	NA	intron (NM_014751, intron 3 of 13)	intron (NM_014751, intron 3 of 13)	40699	NM_001282971	9788	Hs.336994	NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS1, I-BAR domain containing	protein-coding
4578	chr5	149189400	149189684	+	0	NA	intron (NM_001172699, intron 1 of 10)	L2a|LINE|L2	38039	NM_001172699	133522	Hs.483816	NM_133263	ENSG00000155846	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	PPARG coactivator 1 beta	protein-coding
4234	chr4	68266842	68266863	+	0	NA	Intergenic	Intergenic	20866	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
3695	chr21	38381116	38381552	+	0	NA	intron (NM_001317777, intron 2 of 2)	intron (NM_001317777, intron 2 of 2)	2471	NM_018962	53820	Hs.254560	NM_018962	ENSG00000183145	RIPPLY3	DSCR6	ripply transcriptional repressor 3	protein-coding
1239	chr12	92759749	92759872	+	0	NA	Intergenic	Intergenic	-55497	NR_027932	574028	Hs.730377	NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	protein-coding
4489	chr5	73502557	73502643	+	0	NA	Intergenic	Intergenic	101550	NR_105009	102503429	Hs.519391	NR_105009	ENSG00000248942	LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA
6306	chrX	61732621	61733476	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	838170	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
3035	chr2	58104752	58105027	+	0	NA	Intergenic	Intergenic	-29897	NM_001288837	7444	Hs.715298	NM_006296	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
769	chr11	12824080	12824287	+	0	NA	intron (NM_021961, intron 3 of 12)	intron (NM_021961, intron 3 of 12)	128214	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
1181	chr12	42312430	42313346	+	0	NA	Intergenic	Intergenic	154897	NR_135040	101927038	Hs.98588	NR_135040	ENSG00000257784	LOC101927038	-	uncharacterized LOC101927038	ncRNA
6009	chr9	97913131	97913235	+	0	NA	intron (NM_001243743, intron 6 of 14)	L2a|LINE|L2	-64807	NR_036109	100422842		NR_036109	ENSG00000207617	MIR3074	mir-3074	microRNA 3074	ncRNA
5549	chr8	9013728	9013830	+	0	NA	Intergenic	Tigger2a|DNA|TcMar-Tigger	-4627	NM_001201329	79660	Hs.458513	NM_024607	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1 regulatory subunit 3B	protein-coding
1809	chr14	70102778	70103000	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	24579	NM_014734	9766	Hs.440025	NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
803	chr11	18010001	18010175	+	0	NA	intron (NM_012139, intron 8 of 10)	intron (NM_012139, intron 8 of 10)	24621	NM_012139	26297	Hs.32470	NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
2744	chr18	54756458	54756598	+	0	NA	Intergenic	AluSz|SINE|Alu	-17178	NR_048536	100885779	Hs.742426	NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA
6027	chr9	108200722	108200771	+	0	NA	TTS (NM_001330731)	TTS (NM_001330731)	-9569	NM_001330739	83856	Hs.136901	NM_031919	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1 like	protein-coding
2559	chr18	3595399	3595617	+	0	NA	intron (NR_024101, intron 2 of 2)	intron (NR_024101, intron 2 of 2)	1396	NR_024101	649446	Hs.19872	NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
4796	chr6	43894352	43894372	+	0	NA	intron (NR_024478, intron 1 of 1)	intron (NR_024478, intron 1 of 1)	35597	NR_024478	100132354	Hs.376232	NR_024478		LINC01512	HI-LNC77	long intergenic non-protein coding RNA 1512	ncRNA
4133	chr4	49100952	49102545	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	113089	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3199	chr2	99526364	99526415	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	26295	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211 like	protein-coding
5801	chr8	134262368	134262530	+	0	NA	intron (NM_001135242, intron 10 of 15)	intron (NM_001135242, intron 10 of 15)	47098	NM_001258433	10397	Hs.372914	NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
4669	chr6	15950026	15950179	+	0	NA	Intergenic	MIRc|SINE|MIR	-179215	NM_013262	29116	Hs.484738	NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
5890	chr9	42819060	42819076	+	0	NA	intron (NR_135597, intron 4 of 4)	ALR/Alpha|Satellite|centr	38134	NR_136299	101929583	Hs.404758	NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene	pseudo
5287	chr7	68235962	68236143	+	0	NA	Intergenic	Intergenic	750812	NR_120514	102723427	Hs.583491	NR_120514	ENSG00000225209	LOC102723427	-	uncharacterized LOC102723427	ncRNA
60	chr1	31329055	31329236	+	0	NA	Intergenic	Intergenic	52335	NM_014654	9672	Hs.158287	NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
1245	chr12	94221668	94221818	+	0	NA	intron (NM_001320100, intron 2 of 2)	L1MB1|LINE|L1	-90144	NR_110092	101928731	Hs.659971	NR_110092	ENSG00000258274	LOC101928731	-	uncharacterized LOC101928731	ncRNA
1400	chr12	125566676	125566797	+	0	NA	intron (NM_023928, intron 3 of 17)	AluJb|SINE|Alu	16823	NM_001319839	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
1067	chr11	128212764	128212804	+	0	NA	Intergenic	Intergenic	179421	NM_005238	2113	Hs.369438	NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
691	chr10	78057572	78057990	+	0	NA	intron (NR_131178, intron 6 of 7)	intron (NR_131178, intron 6 of 7)	515262	NM_032024	83938	Hs.118161	NM_032024	ENSG00000148655	C10orf11	CDA017	chromosome 10 open reading frame 11	protein-coding
2615	chr18	25625247	25625481	+	0	NA	intron (NM_001792, intron 2 of 15)	intron (NM_001792, intron 2 of 15)	-8815	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
5587	chr8	29658197	29658458	+	0	NA	Intergenic	Intergenic	27693	NR_125817	101929470	Hs.204721	NR_125817	ENSG00000248964	LOC101929470	-	uncharacterized LOC101929470	ncRNA
6301	chrX	61730685	61730709	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	840521	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
6004	chr9	95715778	95715788	+	0	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	6182	NM_001083536	89846	Hs.411081	NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
5173	chr7	29371583	29371731	+	0	NA	intron (NM_001293070, intron 2 of 13)	intron (NM_001293070, intron 2 of 13)	-123071	NR_120522	102724484	Hs.638665	NR_120522		LOC102724484	-	uncharacterized LOC102724484	ncRNA
1676	chr14	36843798	36844076	+	0	NA	Intergenic	Intergenic	-54055	NM_001308110	51562	Hs.368647	NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
1388	chr12	123543201	123543923	+	0	NA	intron (NM_020845, intron 1 of 24)	L2c|LINE|L2	-22369	NR_038290	100507091	Hs.683912	NR_038290	ENSG00000251497	LOC100507091	-	uncharacterized LOC100507091	ncRNA
3134	chr2	89879778	89879993	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	768001	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
346	chr1	169154185	169154336	+	0	NA	intron (NM_197972, intron 10 of 11)	L2c|LINE|L2	78313	NM_001677	481	Hs.291196	NM_001677	ENSG00000143153	ATP1B1	ATP1B	ATPase Na+/K+ transporting subunit beta 1	protein-coding
5245	chr7	61753790	61753927	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1010576	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
3085	chr2	80295483	80295871	+	0	NA	intron (NM_001282597, intron 7 of 18)	intron (NM_001282597, intron 7 of 18)	-201968	NR_107047	102465877		NR_107047	ENSG00000276917	MIR8080	hsa-mir-8080	microRNA 8080	ncRNA
5453	chr7	129992395	129992656	+	0	NA	intron (NM_001127441, intron 6 of 13)	L2|LINE|L2	7895	NM_080385	93979	Hs.567642	NM_080385	ENSG00000158525	CPA5	-	carboxypeptidase A5	protein-coding
3171	chr2	92284603	92284813	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	155549	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
427	chr1	207232583	207233112	+	0	NA	intron (NM_001018053, intron 2 of 14)	intron (NM_001018053, intron 2 of 14)	6227	NM_006212	5208	Hs.282702	NM_006212	ENSG00000123836	PFKFB2	PFK-2/FBPase-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding
5121	chr7	5927952	5928390	+	0	NA	Intergenic	Intergenic	7742	NM_001097622	654231	Hs.571315	NM_001097622	ENSG00000122543	OCM	OCM1|OM|ONCM	oncomodulin	protein-coding
6503	chrY	58996415	58996439	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-103976	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
4735	chr6	24000412	24000682	+	0	NA	Intergenic	Intergenic	-125867	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
82	chr1	37858703	37858910	+	0	NA	Intergenic	MIR|SINE|MIR	81238	NR_038842	728431	Hs.380738	NR_038842	ENSG00000233621	LINC01137	-	long intergenic non-protein coding RNA 1137	ncRNA
3464	chr20	7751465	7751583	+	0	NA	Intergenic	Intergenic	169569	NM_017545	54363	Hs.193640	NM_017545	ENSG00000101323	HAO1	GOX|GOX1|HAOX1	hydroxyacid oxidase 1	protein-coding
2202	chr16	26676465	26676623	+	0	NA	Intergenic	Intergenic	-401675	NM_001145545	162083	Hs.120831	NM_182831	ENSG00000234186	C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
650	chr10	42815440	42815442	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	48052	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
4635	chr6	1757813	1757844	+	0	NA	intron (NM_001500, intron 7 of 10)	intron (NM_001500, intron 7 of 10)	147147	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
1154	chr12	34841654	34841672	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	666447	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
895	chr11	51586651	51587278	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	71682	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
1763	chr14	61724493	61724709	+	0	NA	Intergenic	Intergenic	23929	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
4499	chr5	92298541	92298673	+	0	NA	Intergenic	Intergenic	608442	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
5237	chr7	61083982	61084002	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1680442	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
69	chr1	32528005	32528577	+	0	NA	Intergenic	Intergenic	-9341	NM_001319677	55116	Hs.25544	NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding
4299	chr4	114947398	114947509	+	0	NA	Intergenic	L2a|LINE|L2	-46575	NM_024590	79642	Hs.22895	NM_024590	ENSG00000180801	ARSJ	-	arylsulfatase family member J	protein-coding
1910	chr14	89633389	89633443	+	0	NA	intron (NM_001085471, intron 6 of 6)	intron (NM_001085471, intron 6 of 6)	250038	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
2762	chr18	56763334	56763386	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-43729	NM_033280	90701	Hs.45107	NM_033280	ENSG00000166562	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C, signal peptidase complex subunit	protein-coding
3076	chr2	69444231	69444284	+	0	NA	intron (NM_032208, intron 17 of 17)	L3|LINE|CR1	113443	NR_036073	100423030		NR_036073	ENSG00000266649	MIR3126	mir-3126	microRNA 3126	ncRNA
224	chr1	105534301	105534335	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	627239	NR_125954	101928476	Hs.563856	NR_125954	ENSG00000230768	LINC01676	-	long intergenic non-protein coding RNA 1676	ncRNA
3608	chr21	10780408	10780421	+	0	NA	Intergenic	(GAGTG)n|Simple_repeat|Simple_repeat	210529	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
3402	chr2	224162431	224162536	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	245835	NM_080671	23704	Hs.348522	NM_080671	ENSG00000152049	KCNE4	MIRP3	potassium voltage-gated channel subfamily E regulatory subunit 4	protein-coding
3264	chr2	148136755	148137229	+	0	NA	Intergenic	L2c|LINE|L2	-465094	NM_001278580	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
6050	chr9	120162685	120162825	+	0	NA	intron (NM_014010, intron 1 of 21)	intron (NM_014010, intron 1 of 21)	14562	NM_014010	23245	Hs.601562	NM_014010	ENSG00000148219	ASTN2	bA67K19.1	astrotactin 2	protein-coding
2711	chr18	45748472	45748618	+	0	NA	intron (NM_001318841, intron 2 of 4)	intron (NM_001318841, intron 2 of 4)	-84865	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
3501	chr20	20193368	20193533	+	0	NA	intron (NM_015585, intron 17 of 26)	intron (NM_015585, intron 17 of 26)	-155315	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
1982	chr14	106651169	106651362	+	0	NA	Intergenic	L1P4|LINE|L1	-93004	NR_033375	338004	Hs.569411	NR_033375		LINC00226	C14orf97|NCRNA00226	long intergenic non-protein coding RNA 226	ncRNA
5226	chr7	61079912	61079932	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1684512	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
2393	chr16	84554289	84554850	+	0	NA	Intergenic	Intergenic	-16281	NM_020947	57707	Hs.288274	NM_020947	ENSG00000140950	TLDC1	KIAA1609	TBC/LysM-associated domain containing 1	protein-coding
3423	chr2	232112687	232112760	+	0	NA	intron (NM_001271466, intron 8 of 24)	intron (NM_001271466, intron 8 of 24)	41810	NM_001271466	80210	Hs.162411	NM_025139	ENSG00000135931	ARMC9	ARM|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
5980	chr9	92800947	92801017	+	0	NA	intron (NR_038882, intron 1 of 3)	L1MA5A|LINE|L1	2799	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
426	chr1	207232386	207232582	+	0	NA	intron (NM_001018053, intron 2 of 14)	intron (NM_001018053, intron 2 of 14)	5864	NM_006212	5208	Hs.282702	NM_006212	ENSG00000123836	PFKFB2	PFK-2/FBPase-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding
4127	chr4	40665391	40665643	+	0	NA	Intergenic	Intergenic	-33634	NM_001098634	54502	Hs.518727	NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
3222	chr2	121793460	121793610	+	0	NA	Intergenic	MER82|DNA|TcMar-Tigger	238668	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
1435	chr13	26261789	26261893	+	0	NA	intron (NM_016529, intron 24 of 36)	intron (NM_016529, intron 24 of 36)	218929	NM_001313741	51761	Hs.444957	NM_016529	ENSG00000132932	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase phospholipid transporting 8A2	protein-coding
279	chr1	121358255	121358314	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	97374	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
2408	chr17	4119391	4119820	+	0	NA	intron (NR_047571, intron 3 of 23)	intron (NR_047571, intron 3 of 23)	47537	NM_001257999	51479	Hs.696087	NM_016376	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
483	chr1	224392427	224392565	+	0	NA	Intergenic	Intergenic	8485	NR_110669	101927143	Hs.638720	NR_110669	ENSG00000232628	LOC101927143	-	uncharacterized LOC101927143	ncRNA
498	chr1	230321635	230321767	+	0	NA	intron (NM_001291866, intron 2 of 15)	L1MC1|LINE|L1	118759	NM_004481	2590	Hs.743964	NM_004481	ENSG00000143641	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
4145	chr4	49124059	49126391	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	136566	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3520	chr20	26318674	26318848	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-128892	NR_040095	284801	Hs.370699	NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
2055	chr15	60847826	60848087	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	36751	NM_134262	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
5576	chr8	28569705	28569721	+	0	NA	intron (NR_073468, intron 1 of 4)	L2b|LINE|L2	10723	NM_001440	2137	Hs.491354	NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
1487	chr13	51041197	51041264	+	0	NA	intron (NR_109974, intron 4 of 6)	intron (NR_109974, intron 4 of 6)	60355	NR_125753	103689915	Hs.722230	NR_125753	ENSG00000229323	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
4311	chr4	130315655	130316379	+	0	NA	Intergenic	Intergenic	298735	NM_001099783	132321	Hs.567679	NM_173487	ENSG00000151470	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
4698	chr6	20892889	20893235	+	0	NA	intron (NM_017774, intron 9 of 15)	intron (NM_017774, intron 9 of 15)	358374	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
2028	chr15	53951433	53951577	+	0	NA	intron (NR_102334, intron 14 of 19)	intron (NR_102334, intron 14 of 19)	100354	NM_182758	256764	Hs.122125	NM_182758	ENSG00000166415	WDR72	AI2A3	WD repeat domain 72	protein-coding
1540	chr13	98282064	98282224	+	0	NA	Intergenic	Intergenic	195669	NM_021033	5911	Hs.508480	NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
3075	chr2	69444190	69444230	+	0	NA	intron (NM_032208, intron 17 of 17)	L3|LINE|CR1	113396	NR_036073	100423030		NR_036073	ENSG00000266649	MIR3126	mir-3126	microRNA 3126	ncRNA
1606	chr13	111151806	111151993	+	0	NA	intron (NM_001846, intron 40 of 47)	THE1C|LTR|ERVL-MaLR	8627	NR_046583	100874203	Hs.508716	NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	ncRNA
6156	chrUn_gl000216	18842	19502	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
2064	chr15	64889550	64889870	+	0	NA	intron (NM_015042, intron 1 of 8)	intron (NM_015042, intron 1 of 8)	98091	NM_015042	23060	Hs.595451	NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
99	chr1	40311648	40311703	+	0	NA	intron (NR_132413, intron 1 of 3)	intron (NR_132413, intron 1 of 3)	37508	NM_001312691	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
4767	chr6	28092339	28092395	+	0	NA	promoter-TSS (NM_001320558)	promoter-TSS (NM_001320558)	33	NM_001320556	80345	Hs.656641	NM_025231	ENSG00000196812	ZSCAN16	ZNF392|ZNF435|dJ265C24.3	zinc finger and SCAN domain containing 16	protein-coding
5424	chr7	126124179	126124369	+	0	NA	intron (NM_001127323, intron 9 of 10)	intron (NM_001127323, intron 9 of 10)	573964	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
3553	chr20	29832252	29832483	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-13100	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
5218	chr7	61079026	61079032	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1685405	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
4892	chr6	81236987	81237113	+	0	NA	Intergenic	LTR90B|LTR|LTR	420723	NM_001318975	594	Hs.654441	NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
1933	chr14	91765606	91765987	+	0	NA	intron (NM_001080414, intron 21 of 29)	MER82|DNA|TcMar-Tigger	-45572	NM_003485	8111	Hs.8882	NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
2022	chr15	50350873	50351242	+	0	NA	intron (NR_073597, intron 3 of 26)	intron (NR_073597, intron 3 of 26)	54456	NR_073598	79895	Hs.511311	NM_024837	ENSG00000104043	ATP8B4	ATPIM	ATPase phospholipid transporting 8B4 (putative)	protein-coding
790	chr11	15764558	15764585	+	0	NA	Intergenic	Intergenic	99140	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
6295	chrX	61690292	61690505	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	880820	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
5164	chr7	28611744	28612080	+	0	NA	intron (NM_182899, intron 4 of 9)	intron (NM_182899, intron 4 of 9)	-113686	NM_001011666	9586	Hs.437075	NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5	cAMP responsive element binding protein 5	protein-coding
533	chr10	29264736	29265066	+	0	NA	Intergenic	Intergenic	129564	NM_001278522	283080		NM_001278522		C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
4446	chr5	46334097	46334125	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-637891	NM_021072	348980	Hs.353176	NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
2080	chr15	69978461	69978835	+	0	NA	intron (NR_126437, intron 5 of 5)	L3|LINE|CR1	94109	NR_126437	104472713	Hs.430824	NR_126437	ENSG00000259641	PCAT29	-	prostate cancer associated transcript 29 (non-protein coding)	ncRNA
4448	chr5	46334154	46334288	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-638001	NM_021072	348980	Hs.353176	NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
3551	chr20	29832079	29832238	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-13309	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
1122	chr12	16266239	16266397	+	0	NA	Intergenic	Intergenic	164301	NM_001170798	729025	Hs.692712	NM_001170798	ENSG00000188991	SLC15A5	-	solute carrier family 15 member 5	protein-coding
6100	chr9_gl000199_random	43814	43827	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
5474	chr7	135708582	135708735	+	0	NA	Intergenic	MER34|LTR|ERV1	-46454	NM_001128619	767558	Hs.602015	NM_001128619	ENSG00000267697	LUZP6	MPD6|MTPNUT	leucine zipper protein 6	protein-coding
2416	chr17	19091189	19091324	+	0	NA	Intergenic	Intergenic	-25319	NM_001291904	79999	Hs.677375	NM_024934	ENSG00000197665	LOC79999	-	uncharacterized LOC79999	protein-coding
6045	chr9	116106290	116106477	+	0	NA	Intergenic	Intergenic	-3763	NM_001012361	114987	Hs.133331	NM_145241	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
4643	chr6	5729352	5729592	+	0	NA	intron (NM_006567, intron 6 of 6)	intron (NM_006567, intron 6 of 6)	-33967	NR_110842	101927950	Hs.571136	NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
1053	chr11	126854137	126854368	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	4186	NR_036126	100422918		NR_036126	ENSG00000266215	MIR3167	-	microRNA 3167	ncRNA
414	chr1	205889058	205889282	+	0	NA	intron (NM_134325, intron 18 of 21)	intron (NM_134325, intron 18 of 21)	23418	NM_134325	115019	Hs.164073	NM_052934	ENSG00000174502	SLC26A9	-	solute carrier family 26 member 9	protein-coding
462	chr1	218478331	218478615	+	0	NA	intron (NM_016052, intron 3 of 4)	intron (NM_016052, intron 3 of 4)	19844	NM_016052	51018	Hs.660109	NM_016052	ENSG00000067533	RRP15	CGI-115|KIAA0507	ribosomal RNA processing 15 homolog	protein-coding
3852	chr3	53990658	53991062	+	0	NA	Intergenic	Intergenic	-64818	NM_021237	58515	Hs.58471	NM_021237	ENSG00000113811	SELENOK	HSPC030|HSPC297|SELK	selenoprotein K	protein-coding
6359	chrY	13448935	13449126	+	0	NA	Intergenic	(CACTC)n|Simple_repeat|Simple_repeat	1084359	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4558	chr5	134820211	134820429	+	0	NA	Intergenic	MamRep434|DNA|TcMar-Tigger	-32231	NM_001099221	497189	Hs.552091	NM_001099221	ENSG00000255833	TIFAB	-	TIFA inhibitor	protein-coding
263	chr1	120379630	120379756	+	0	NA	intron (NM_001047980, intron 6 of 7)	AluY|SINE|Alu	7810	NM_001047980	343505		NM_001047980		NBPF7	-	neuroblastoma breakpoint family member 7	protein-coding
3746	chr22	18878000	18878055	+	0	NA	intron (NR_136571, intron 1 of 11)	AluSc8|SINE|Alu	3917	NR_136571	100996432	Hs.631668	NR_136571		LINC01663	-	long intergenic non-protein coding RNA 1663	ncRNA
5919	chr9	67320186	67320276	+	0	NA	intron (NR_136300, intron 3 of 3)	ALR/Alpha|Satellite|centr	29780	NR_136300	102724580	Hs.494013	NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene	pseudo
4536	chr5	125055558	125055560	+	0	NA	Intergenic	Intergenic	226605	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
4385	chr5	1545849	1546376	+	0	NA	Intergenic	Intergenic	-22020	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
3361	chr2	210337296	210337487	+	0	NA	intron (NM_001039538, intron 1 of 14)	intron (NM_001039538, intron 1 of 14)	48620	NM_001039538	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding
2985	chr2	40437242	40437280	+	0	NA	intron (NM_021097, intron 1 of 9)	intron (NM_021097, intron 1 of 9)	220183	NM_001112801	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding
3593	chr21	10086209	10086452	+	0	NA	Intergenic	(GAGTG)n|Simple_repeat|Simple_repeat	-117736	NR_038328	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
4979	chr6	105774379	105774530	+	0	NA	intron (NM_002726, intron 9 of 14)	intron (NM_002726, intron 9 of 14)	76545	NM_002726	5550	Hs.436564	NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
5932	chr9	70009920	70009952	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	168879	NM_001126334	653427	Hs.714683	NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4-like 5	protein-coding
5709	chr8	93974856	93975436	+	0	NA	intron (NM_001171797, intron 1 of 4)	intron (NM_001171797, intron 1 of 4)	2671	NM_001191036	286144	Hs.440643	NM_001171795	ENSG00000205133	TRIQK	C8orf83|PRO0845|UPF0599	triple QxxK/R motif containing	protein-coding
3673	chr21	36251229	36251712	+	0	NA	intron (NM_001001890, intron 2 of 5)	intron (NM_001001890, intron 2 of 5)	9517	NM_001122607	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
3210	chr2	109249423	109249556	+	0	NA	intron (NM_001193484, intron 1 of 9)	intron (NM_001193484, intron 1 of 9)	11787	NM_001193484	3987	Hs.597715	NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
5665	chr8	73735606	73735898	+	0	NA	intron (NM_004770, intron 2 of 2)	intron (NM_004770, intron 2 of 2)	91472	NR_110656	101926908	Hs.680588	NR_110656	ENSG00000253726	LOC101926908	-	uncharacterized LOC101926908	ncRNA
1409	chr12	129556176	129556462	+	0	NA	TTS (NM_133448)	TTS (NM_133448)	-37916	NR_104173	283352	Hs.665667	NR_104172	ENSG00000249196	LOC283352	-	uncharacterized LOC283352	ncRNA
5895	chr9	66823373	66823721	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-99420	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
4417	chr5	7630064	7630187	+	0	NA	intron (NM_020546, intron 4 of 24)	intron (NM_020546, intron 4 of 24)	221478	NM_001089584	134121	Hs.709979	NM_001089584	ENSG00000215217	C5orf49	-	chromosome 5 open reading frame 49	protein-coding
4581	chr5	149317146	149317179	+	0	NA	intron (NM_000440, intron 1 of 21)	AluJb|SINE|Alu	-4622	NR_110534	644762	Hs.730366	NR_110534		LOC644762	-	mitochondrial fission factor pseudogene	pseudo
1716	chr14	51849036	51849293	+	0	NA	Intergenic	Intergenic	49053	NR_038358	283553	Hs.325752	NR_038358	ENSG00000258479	LINC00640	-	long intergenic non-protein coding RNA 640	ncRNA
4219	chr4	56624190	56624257	+	0	NA	Intergenic	MIRc|SINE|MIR	-62014	NR_003935	644145	Hs.570825	NR_003935		LOC644145	-	exocyst complex component 1 pseudogene	pseudo
293	chr1	142539109	142539325	+	0	NA	Intergenic	Intergenic	174388	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	ankyrin repeat domain 20 family member A12, pseudogene	pseudo
1272	chr12	99962871	99962875	+	0	NA	intron (NM_152788, intron 9 of 25)	intron (NM_152788, intron 9 of 25)	-78655	NM_153364	196472	Hs.591011	NM_153364	ENSG00000180219	FAM71C	-	family with sequence similarity 71 member C	protein-coding
1663	chr14	31020962	31021073	+	0	NA	Intergenic	Intergenic	-7312	NM_001308097	55632	Hs.509008	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
5614	chr8	43096489	43096783	+	0	NA	Intergenic	SAR|Satellite|Satellite	-50949	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
3818	chr3	139398	139645	+	0	NA	Intergenic	Intergenic	74090	NR_110824	102723448	Hs.543290	NR_110824		LINC01986	-	long intergenic non-protein coding RNA 1986	ncRNA
2888	chr2	1975890	1976188	+	0	NA	intron (NM_001329845, intron 8 of 24)	intron (NM_001329845, intron 8 of 24)	-227720	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
469	chr1	221483758	221483849	+	0	NA	Intergenic	Intergenic	25835	NR_024236	400804	Hs.722626	NR_024236	ENSG00000234754	C1orf140	-	uncharacterized LOC400804	ncRNA
5716	chr8	94457168	94457454	+	0	NA	intron (NR_033858, intron 7 of 10)	intron (NR_033858, intron 7 of 10)	255350	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	ncRNA
635	chr10	42409461	42409510	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	454008	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
6350	chrY	10043695	10043815	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	295348	NR_001540	252955	Hs.522846	NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis-specific transcript, Y-linked 23 (non-protein coding)	ncRNA
1088	chr12	3807791	3807872	+	0	NA	intron (NM_032680, intron 3 of 10)	intron (NM_032680, intron 3 of 10)	54535	NM_001144958	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
5373	chr7	107352299	107352952	+	0	NA	intron (NM_000441, intron 19 of 20)	intron (NM_000441, intron 19 of 20)	31452	NR_144536	101927974	Hs.432792	NR_144536		LOC101927974	-	uncharacterized LOC101927974	ncRNA
1566	chr13	101942148	101942251	+	0	NA	intron (NM_052867, intron 9 of 43)	intron (NM_052867, intron 9 of 43)	126614	NM_052867	259232	Hs.525146	NM_052867	ENSG00000102452	NALCN	CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1	sodium leak channel, non-selective	protein-coding
979	chr11	92950402	92950562	+	0	NA	Intergenic	L2c|LINE|L2	-19341	NM_152313	120103	Hs.148766	NM_152313	ENSG00000180773	SLC36A4	PAT4	solute carrier family 36 member 4	protein-coding
3950	chr3	125604918	125605080	+	0	NA	promoter-TSS (NR_125395)	promoter-TSS (NR_125395)	-79	NR_125395	101927056	Hs.744344	NR_125395	ENSG00000241288	LOC101927056	-	uncharacterized LOC101927056	ncRNA
3737	chr22	16851497	16852057	+	0	NA	Intergenic	HSATII|Satellite|Satellite	221923	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
709	chr10	92970845	92970917	+	0	NA	intron (NM_001257101, intron 1 of 9)	intron (NM_001257101, intron 1 of 9)	-9027	NM_001256549	84333	Hs.500512	NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
3603	chr21	10719803	10721408	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	270338	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
40	chr1	16280454	16280652	+	0	NA	intron (NM_003443, intron 2 of 15)	intron (NM_003443, intron 2 of 15)	22074	NM_001324138	7709	Hs.433764	NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
310	chr1	149034638	149034658	+	0	NA	intron (NR_104217, intron 2 of 17).2	HSATII|Satellite|Satellite	75077	NR_104217	101929780	Hs.534675	NR_104217	ENSG00000272150	NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family member 25, pseudogene	pseudo
192	chr1	82692072	82692235	+	0	NA	Intergenic	Intergenic	426071	NM_012302	23266	Hs.24212	NM_012302	ENSG00000117114	ADGRL2	CIRL2|CL2|LEC1|LPHH1|LPHN2	adhesion G protein-coupled receptor L2	protein-coding
1115	chr12	12486420	12486743	+	0	NA	intron (NM_018050, intron 3 of 3)	intron (NM_018050, intron 3 of 3)	16588	NM_018050	54682	Hs.591145	NM_018050	ENSG00000111261	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
5626	chr8	59745866	59746345	+	0	NA	intron (NM_014729, intron 5 of 8)	intron (NM_014729, intron 5 of 8)	-173701	NM_003580	8439	Hs.372000	NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
4421	chr5	8383474	8383660	+	0	NA	intron (NR_039984, intron 3 of 5)	intron (NR_039984, intron 3 of 5)	74110	NR_039984	729506	Hs.566412	NR_039984	ENSG00000245729	LOC729506	-	uncharacterized LOC729506	ncRNA
4406	chr5	6453293	6453517	+	0	NA	intron (NM_001145161, intron 1 of 1)	intron (NM_001145161, intron 1 of 1)	4669	NM_001145161	134111	Hs.126856	NM_001145161	ENSG00000215218	UBE2QL1	-	ubiquitin conjugating enzyme E2 Q family like 1	protein-coding
4320	chr4	139831502	139831521	+	0	NA	intron (NR_133945, intron 2 of 2)	intron (NR_133945, intron 2 of 2)	102289	NR_133945	105377448	Hs.200280	NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
4262	chr4	83422190	83422287	+	0	NA	intron (NM_001080506, intron 5 of 7)	intron (NM_001080506, intron 5 of 7)	60888	NM_001080506	441027	Hs.507676	NM_001080506	ENSG00000249242	TMEM150C	TTN3	transmembrane protein 150C	protein-coding
3529	chr20	29812788	29812903	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-32622	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
4303	chr4	120854782	120855517	+	0	NA	Intergenic	L1MD1|LINE|L1	-5546	NR_121639	100996694	Hs.119926	NR_121639	ENSG00000250392	LOC100996694	-	uncharacterized LOC100996694	ncRNA
3764	chr22	20689789	20689851	+	0	NA	intron (NR_136572, intron 3 of 5)	AluSc8|SINE|Alu	-32992	NR_136569	729461	Hs.629498	NM_201401	ENSG00000274044	LINC01660	-	long intergenic non-protein coding RNA 1660	ncRNA
2293	chr16	51068389	51068714	+	0	NA	intron (NR_110913, intron 2 of 2)	intron (NR_110913, intron 2 of 2)	16882	NR_110913	101927334	Hs.555184	NR_110913	ENSG00000261637	LINC02127	-	long intergenic non-protein coding RNA 2127	ncRNA
1707	chr14	43188371	43188572	+	0	NA	Intergenic	Intergenic	1112412	NM_152447	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
3103	chr2	89853074	89853442	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	741374	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
267	chr1	121351678	121352812	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	91335	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
543	chr10	38776804	38776804	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	59730	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
1892	chr14	85340676	85340906	+	0	NA	Intergenic	Intergenic	-512828	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
2044	chr15	59879382	59879700	+	0	NA	Intergenic	Intergenic	-24441	NM_004751	9245	Hs.194710	NM_004751	ENSG00000140297	GCNT3	C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding
4561	chr5	136709945	136710115	+	0	NA	intron (NM_004598, intron 2 of 10)	intron (NM_004598, intron 2 of 10)	124988	NM_004598	6695	Hs.596136	NM_004598	ENSG00000152377	SPOCK1	SPOCK|TESTICAN|TIC1	SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1	protein-coding
4553	chr5	132626843	132627074	+	0	NA	intron (NM_015082, intron 6 of 15)	intron (NM_015082, intron 6 of 15)	136440	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
4231	chr4	68264207	68264223	+	0	NA	Intergenic	Intergenic	23503	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
1437	chr13	27435808	27436047	+	0	NA	Intergenic	Intergenic	-101005	NM_005288	2835	Hs.123034	NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
4648	chr6	6826531	6826747	+	0	NA	Intergenic	Intergenic	-203580	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
2813	chr19	7158072	7158151	+	0	NA	intron (NM_001079817, intron 9 of 20)	intron (NM_001079817, intron 9 of 20)	88640	NM_001044388	79230	Hs.591380	NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
6189	chrUn_gl000216	79361	79459	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
2724	chr18	47685088	47685625	+	0	NA	intron (NM_001080467, intron 1 of 39)	intron (NM_001080467, intron 1 of 39)	-32423	NR_036204	100422865		NR_036204	ENSG00000283343	MIR4320	-	microRNA 4320	ncRNA
2517	chr17	65525560	65525733	+	0	NA	intron (NM_181671, intron 1 of 9)	L1MB5|LINE|L1	-57945	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
757	chr11	10401755	10401867	+	0	NA	intron (NR_103765, intron 2 of 3)	MamRep605|Unknown|Unknown	-70057	NM_001172431	272	Hs.501890	NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
2577	chr18	10019961	10020027	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	106039	NM_003574	9218	Hs.165195	NM_003574	ENSG00000101558	VAPA	VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
6210	chrUn_gl000216	163034	163187	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
9	chr1	725231	725269	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-11182	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
3359	chr2	210337132	210337248	+	0	NA	intron (NM_001039538, intron 1 of 14)	intron (NM_001039538, intron 1 of 14)	48419	NM_001039538	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding
6108	chrUn_gl000212	40498	40524	+	0	NA	intron (NR_027278, intron 1 of 7)	HSATI|Satellite|Satellite	16462	NR_027278	26080	Hs.448583	NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
1740	chr14	59165241	59165402	+	0	NA	Intergenic	Intergenic	59766	NR_046095	51339	Hs.48950	NM_016651	ENSG00000165617	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3	dishevelled binding antagonist of beta catenin 1	protein-coding
1600	chr13	110358980	110359432	+	0	NA	Intergenic	Intergenic	-21415	NR_103846	101409253	Hs.578072	NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
6417	chrY	13817911	13817994	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	715437	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
603	chr10	39108809	39108896	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	119125	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
5666	chr8	73735899	73736994	+	0	NA	intron (NM_004770, intron 2 of 2)	intron (NM_004770, intron 2 of 2)	92166	NR_110656	101926908	Hs.680588	NR_110656	ENSG00000253726	LOC101926908	-	uncharacterized LOC101926908	ncRNA
5423	chr7	126123832	126124178	+	0	NA	intron (NM_001127323, intron 9 of 10)	intron (NM_001127323, intron 9 of 10)	574233	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
90	chr1	38617459	38617481	+	0	NA	Intergenic	Intergenic	62567	NR_037432	100500801		NR_037432	ENSG00000265596	MIR3659	mir-3659	microRNA 3659	ncRNA
4712	chr6	21264297	21264893	+	0	NA	Intergenic	Intergenic	247528	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
3514	chr20	26317896	26318337	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-128247	NR_040095	284801	Hs.370699	NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
565	chr10	38818171	38818661	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	101342	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
3102	chr2	89853051	89853073	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	741178	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
3247	chr2	136899159	136899359	+	0	NA	Intergenic	Intergenic	-23534	NM_003467	7852	Hs.593413	NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS	C-X-C motif chemokine receptor 4	protein-coding
850	chr11	47132993	47133447	+	0	NA	intron (NM_001003678, intron 3 of 8)	intron (NM_001003678, intron 3 of 8)	65456	NM_001242832	84364	Hs.436204	NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
5361	chr7	105536669	105537152	+	0	NA	Intergenic	L1ME3B|LINE|L1	-19879	NM_152749	222255	Hs.745056	NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
4057	chr3	188690906	188691303	+	0	NA	Intergenic	Tigger15a|DNA|TcMar-Tigger	-25676	NR_046873	100874043	Hs.616287	NR_046873	ENSG00000234076	TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
4997	chr6	108988003	108988259	+	0	NA	intron (NM_001455, intron 2 of 2)	intron (NM_001455, intron 2 of 2)	-84726	NR_033376	387111	Hs.520310	NR_033376	ENSG00000203801	LINC00222	C6orf181|NCRNA00222|dJ354J5.2	long intergenic non-protein coding RNA 222	ncRNA
4683	chr6	19632694	19632989	+	0	NA	Intergenic	Intergenic	172149	NR_134649	100506885	Hs.346489	NR_134649	ENSG00000228412	LOC100506885	-	uncharacterized LOC100506885	ncRNA
2696	chr18	42996409	42996580	+	0	NA	intron (NM_001242692, intron 1 of 20)	intron (NM_001242692, intron 1 of 20)	90507	NR_110899	101927980	Hs.591058	NR_110899		SLC14A2-AS1	-	SLC14A2 antisense RNA 1	ncRNA
1360	chr12	117156350	117157026	+	0	NA	intron (NM_024738, intron 4 of 4)	intron (NM_024738, intron 4 of 4)	19187	NM_024738	79794	Hs.592011	NM_024738	ENSG00000111412	C12orf49	-	chromosome 12 open reading frame 49	protein-coding
5891	chr9	42819077	42819200	+	0	NA	intron (NR_135597, intron 4 of 4)	ALR/Alpha|Satellite|centr	38064	NR_136299	101929583	Hs.404758	NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene	pseudo
3620	chr21	10807402	10807413	+	0	NA	Intergenic	HSATII|Satellite|Satellite	183536	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
6484	chrY	28786632	28786765	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	912061	NR_002176	474148	Hs.511777	NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis-specific transcript, Y-linked 3B (non-protein coding)	ncRNA
233	chr1	107767265	107767452	+	0	NA	intron (NM_001330665, intron 2 of 6)	intron (NM_001330665, intron 2 of 6)	76667	NM_001113228	22854	Hs.133046	NM_014917	ENSG00000162631	NTNG1	Lmnt1	netrin G1	protein-coding
6217	chrUn_gl000225	13563	13791	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
1490	chr13	59999039	59999259	+	0	NA	Intergenic	Intergenic	-587703	NR_046539	100874195	Hs.664101	NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
2198	chr16	23219257	23219480	+	0	NA	intron (NM_001039, intron 6 of 12)	intron (NM_001039, intron 6 of 12)	25328	NM_001039	6340	Hs.371727	NM_001039	ENSG00000166828	SCNN1G	BESC3|ENaCg|ENaCgamma|PHA1|SCNEG	sodium channel epithelial 1 gamma subunit	protein-coding
2947	chr2	11260450	11260879	+	0	NA	intron (NR_040080, intron 6 of 8)	intron (NR_040080, intron 6 of 8)	11638	NR_040080	285150	Hs.329841	NM_182586	ENSG00000145063	FLJ33534	-	uncharacterized LOC285150	ncRNA
4199	chr4	49638836	49640696	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	651107	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
4480	chr5	72501114	72501506	+	0	NA	Intergenic	Intergenic	-3522	NR_134291	340090	Hs.434311	NR_134291		LOC340090	-	uncharacterized LOC340090	ncRNA
4105	chr4	23819865	23819896	+	0	NA	intron (NM_013261, intron 7 of 12)	intron (NM_013261, intron 7 of 12)	63035	NM_001330753	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
2288	chr16	48999340	48999398	+	0	NA	Intergenic	Intergenic	316373	NM_004352	869	Hs.458423	NM_004352	ENSG00000102924	CBLN1	-	cerebellin 1 precursor	protein-coding
4777	chr6	33846397	33846740	+	0	NA	Intergenic	Intergenic	18116	NR_038989	100507584	Hs.547104	NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
2954	chr2	12006739	12007322	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-29918	NR_036226	100422996		NR_036226	ENSG00000265172	MIR4262	-	microRNA 4262	ncRNA
11	chr1	725354	725364	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-11291	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
5120	chr7	5927805	5927951	+	0	NA	Intergenic	Intergenic	7449	NM_001097622	654231	Hs.571315	NM_001097622	ENSG00000122543	OCM	OCM1|OM|ONCM	oncomodulin	protein-coding
4841	chr6	58776084	58780163	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-490399	NR_132996	106660612	Hs.561539	NR_125727	ENSG00000215190	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
4117	chr4	25929724	25929939	+	0	NA	intron (NM_001145432, intron 1 of 2)	intron (NM_001145432, intron 1 of 2)	14017	NM_001145432	389203	Hs.479386	NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7	small integral membrane protein 20	protein-coding
842	chr11	31779140	31779525	+	0	NA	intron (NM_001288726, intron 10 of 11)	intron (NM_001288726, intron 10 of 11)	46453	NM_001310161	5080	Hs.270303	NM_000280	ENSG00000007372	PAX6	AN|AN2|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
4288	chr4	109169162	109169290	+	0	NA	Intergenic	Intergenic	75950	NR_029373	641518	Hs.535760	NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
2000	chr15	39654946	39654990	+	0	NA	Intergenic	Intergenic	112098	NM_001302797	400360	Hs.376109	NM_207445		C15orf54	-	chromosome 15 open reading frame 54	ncRNA
3340	chr2	191728255	191728364	+	0	NA	Intergenic	Intergenic	-17238	NM_001256310	2744	Hs.116448	NM_014905	ENSG00000115419	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
6498	chrY	58979655	58979851	+	0	NA	Intergenic	(CACTC)n|Simple_repeat|Simple_repeat	-120650	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
2531	chr17	75731962	75732651	+	0	NA	Intergenic	MIR3|SINE|MIR	-7665	NR_104134	100132174	Hs.640110	NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
5960	chr9	81587150	81587878	+	0	NA	Intergenic	Intergenic	173067	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
199	chr1	85690088	85690793	+	0	NA	Intergenic	Intergenic	-23712	NM_032184	84144	Hs.533853	NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
4972	chr6	105707777	105708049	+	0	NA	Intergenic	Tigger3a|DNA|TcMar-Tigger	-80055	NM_022361	64208	Hs.458336	NM_022361	ENSG00000132429	POPDC3	POP3|bA355M14.1	popeye domain containing 3	protein-coding
2410	chr17	6066725	6066993	+	0	NA	Intergenic	Intergenic	92925	NM_015253	23302	Hs.370166	NM_015253	ENSG00000179314	WSCD1	-	WSC domain containing 1	protein-coding
1899	chr14	86339353	86339367	+	0	NA	Intergenic	Intergenic	-61662	NR_110155	101928767	Hs.536380	NR_110155		LOC101928767	-	uncharacterized LOC101928767	ncRNA
4606	chr5	156340985	156341495	+	0	NA	Intergenic	Intergenic	49026	NM_138379	91937	Hs.334907	NM_138379	ENSG00000145850	TIMD4	SMUCKLER|TIM4	T-cell immunoglobulin and mucin domain containing 4	protein-coding
1929	chr14	90910864	90911102	+	0	NA	Intergenic	Intergenic	-10591	NR_033986	400238	Hs.131037	NR_033986	ENSG00000233208	LINC00642	-	long intergenic non-protein coding RNA 642	ncRNA
1737	chr14	59164702	59165034	+	0	NA	Intergenic	Intergenic	59313	NR_046095	51339	Hs.48950	NM_016651	ENSG00000165617	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3	dishevelled binding antagonist of beta catenin 1	protein-coding
4814	chr6	51128315	51128756	+	0	NA	Intergenic	Intergenic	342096	NM_003221	7021	Hs.33102	NM_003221	ENSG00000008196	TFAP2B	AP-2B|AP2-B|PDA2	transcription factor AP-2 beta	protein-coding
3143	chr2	90372674	90372794	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1260850	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
5128	chr7	8637327	8637462	+	0	NA	intron (NM_152745, intron 2 of 2)	intron (NM_152745, intron 2 of 2)	163809	NM_152745	30010	Hs.487564	NM_152745	ENSG00000122584	NXPH1	NPH1|Nbla00697	neurexophilin 1	protein-coding
5789	chr8	125057081	125057213	+	0	NA	intron (NM_001039112, intron 20 of 40)	intron (NM_001039112, intron 20 of 40)	-4124	NR_040044	439941	Hs.683919	NM_001038706	ENSG00000181171	FER1L6-AS1	C8orf54	FER1L6 antisense RNA 1	ncRNA
6334	chrX	131727279	131727680	+	0	NA	Intergenic	Intergenic	-74191	NR_046691	100874102	Hs.619341	NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
3411	chr2	229311732	229312457	+	0	NA	Intergenic	Intergenic	-265733	NM_030623	80309	Hs.436306	NM_030623	ENSG00000153820	SPHKAP	SKIP	SPHK1 interactor, AKAP domain containing	protein-coding
6507	chrY	58996907	58997117	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-103391	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
3284	chr2	160372634	160373030	+	0	NA	intron (NM_001329857, intron 2 of 36)	intron (NM_001329857, intron 2 of 36)	-98973	NR_110588	643072	Hs.632541	NR_110587		LOC643072	-	uncharacterized LOC643072	ncRNA
3223	chr2	121793611	121794205	+	0	NA	Intergenic	Intergenic	239041	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
3244	chr2	135597420	135597722	+	0	NA	intron (NM_138326, intron 1 of 9)	intron (NM_138326, intron 1 of 9)	1385	NM_001307983	130013	Hs.655728	NM_138326	ENSG00000153086	ACMSD	-	aminocarboxymuconate semialdehyde decarboxylase	protein-coding
2122	chr15	92115168	92115457	+	0	NA	Intergenic	LTR53|LTR|ERVL	108743	NR_110106	101926928	Hs.638788	NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
5581	chr8	28949917	28950358	+	0	NA	intron (NM_015254, intron 37 of 39)	intron (NM_015254, intron 37 of 39)	170473	NM_015254	23303	Hs.444767	NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
2280	chr16	46443714	46443934	+	0	NA	Intergenic	Intergenic	159185	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
280	chr1	121358315	121360486	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	98490	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
273	chr1	121354187	121355383	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	93875	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
471	chr1	223829893	223830002	+	0	NA	intron (NM_001143962, intron 2 of 16)	intron (NM_001143962, intron 2 of 16)	23489	NM_001143962	388743	Hs.291487	NM_001143962	ENSG00000203697	CAPN8	nCL-2	calpain 8	protein-coding
3498	chr20	19091483	19091701	+	0	NA	Intergenic	Intergenic	-101698	NM_020689	57419	Hs.654790	NM_020689	ENSG00000185052	SLC24A3	NCKX3	solute carrier family 24 member 3	protein-coding
4991	chr6	107514297	107514569	+	0	NA	intron (NM_020381, intron 7 of 7)	MER5B|DNA|hAT-Charlie	-78797	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
4177	chr4	49151943	49153664	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	164144	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
2262	chr16	34022161	34022372	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-59763	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
1509	chr13	89479071	89479300	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	200078	NR_047490	100861553	Hs.560132	NR_047490		LINC00560	-	long intergenic non-protein coding RNA 560	ncRNA
5631	chr8	60556361	60556763	+	0	NA	Intergenic	Intergenic	-524795	NM_014729	9760	Hs.491805	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
1936	chr14	93315088	93315391	+	0	NA	Intergenic	Intergenic	54663	NM_005113	9950	Hs.104320	NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
2912	chr2	4676725	4676854	+	0	NA	non-coding (NR_034134, exon 5 of 5)	non-coding (NR_034134, exon 5 of 5)	27023	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
1325	chr12	106573028	106573273	+	0	NA	Intergenic	Intergenic	-39339	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
1643	chr14	27404820	27404935	+	0	NA	Intergenic	Intergenic	27029	NR_036193	100423019		NR_036193	ENSG00000265165	MIR4307	-	microRNA 4307	ncRNA
131	chr1	51076614	51076995	+	0	NA	intron (NM_007051, intron 8 of 18)	intron (NM_007051, intron 8 of 18)	-187685	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
1565	chr13	101942067	101942147	+	0	NA	intron (NM_052867, intron 9 of 43)	intron (NM_052867, intron 9 of 43)	126706	NM_052867	259232	Hs.525146	NM_052867	ENSG00000102452	NALCN	CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1	sodium leak channel, non-selective	protein-coding
4277	chr4	94105566	94105891	+	0	NA	intron (NM_001286838, intron 3 of 14)	intron (NM_001286838, intron 3 of 14)	-644350	NM_005172	474	Hs.532680	NM_005172	ENSG00000172238	ATOH1	ATH1|HATH1|MATH-1|bHLHa14	atonal bHLH transcription factor 1	protein-coding
4075	chr3	196625609	196625610	+	0	NA	intron (NM_152699, intron 2 of 9)	AluY|SINE|Alu	30882	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
6016	chr9	99997354	99997380	+	0	NA	intron (NR_136286, intron 1 of 17)	intron (NR_136286, intron 1 of 17)	-3341	NR_036527	57653	Hs.435629	NR_036527	ENSG00000255036	LOC100499484-C9ORF174	-	LOC100499484-C9orf174 readthrough	ncRNA
1502	chr13	79316672	79316905	+	0	NA	Intergenic	Intergenic	-83474	NM_024546	79596	Hs.567576	NM_024546	ENSG00000152193	RNF219	C13orf7	ring finger protein 219	protein-coding
1872	chr14	80821039	80821176	+	0	NA	intron (NR_038355, intron 2 of 8)	(TA)n|Simple_repeat|Simple_repeat	-123710	NM_000793	1734	Hs.202354	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	iodothyronine deiodinase 2	protein-coding
4743	chr6	24283737	24283828	+	0	NA	intron (NM_016356, intron 6 of 9)	intron (NM_016356, intron 6 of 9)	-73349	NM_181337	353219	Hs.697888	NM_181337	ENSG00000146049	KAAG1	RU2AS	kidney associated antigen 1	protein-coding
4665	chr6	15949432	15949573	+	0	NA	Intergenic	Intergenic	-179815	NM_013262	29116	Hs.484738	NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
3488	chr20	15277674	15277746	+	0	NA	intron (NM_080676, intron 6 of 16)	intron (NM_080676, intron 6 of 16)	100206	NM_001033087	140733	Hs.661576	NM_080676	ENSG00000172264	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
2935	chr2	9151242	9151459	+	0	NA	Intergenic	Intergenic	-7471	NR_135604	129642	Hs.467634	NM_138799	ENSG00000143797	MBOAT2	LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2	membrane bound O-acyltransferase domain containing 2	protein-coding
4270	chr4	89870937	89871099	+	0	NA	intron (NM_014883, intron 4 of 23)	intron (NM_014883, intron 4 of 23)	107328	NM_014883	10144	Hs.97270	NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
3875	chr3	97661589	97661771	+	0	NA	3' UTR (NM_032778, exon 10 of 10)	3' UTR (NM_032778, exon 10 of 10)	29615	NM_001261829	84864	Hs.570562	NM_032778	ENSG00000170854	RIOX2	JMJD10|MDIG|MINA|MINA53|NO52|ROX	ribosomal oxygenase 2	protein-coding
2513	chr17	64419713	64419843	+	0	NA	intron (NM_002737, intron 2 of 16)	intron (NM_002737, intron 2 of 16)	-6806	NR_110822	101928001	Hs.650730	NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
37	chr1	11623909	11624232	+	0	NA	Intergenic	L1ME4a|LINE|L1	-45518	NR_104624	101929181	Hs.568616	NR_104624	ENSG00000235643	LINC01647	-	long intergenic non-protein coding RNA 1647	ncRNA
6416	chrY	13817890	13817910	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	715489	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
855	chr11	48115219	48115318	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	-3066	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
5078	chr6	157508247	157508493	+	0	NA	intron (NM_020732, intron 13 of 19)	intron (NM_020732, intron 13 of 19)	236921	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
3659	chr21	10857074	10857237	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	133788	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
1706	chr14	42644202	42644209	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	568146	NM_152447	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
6269	chrX	39828364	39828570	+	0	NA	Intergenic	Intergenic	128252	NM_017745	54880	Hs.659681	NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
1839	chr14	75877127	75877276	+	0	NA	Intergenic	Intergenic	-17308	NM_001135047	122953	Hs.196482	NM_130469	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
1788	chr14	68487914	68488017	+	0	NA	intron (NM_001321809, intron 7 of 11)	intron (NM_001321809, intron 7 of 11)	197656	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
6282	chrX	58563412	58578290	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-633784	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger, X-linked, duplicated A	protein-coding
2186	chr16	18246835	18246970	+	0	NA	Intergenic	Intergenic	179617	NM_001282511	101059953	Hs.636569	NM_001282511	ENSG00000214940	NPIPA8	LCR16a9	nuclear pore complex interacting protein family member A8	protein-coding
680	chr10	76349452	76349519	+	0	NA	intron (NM_006721, intron 8 of 10)	intron (NM_006721, intron 8 of 10)	-60403	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
5658	chr8	71944779	71945204	+	0	NA	Intergenic	Intergenic	323755	NM_172059	2138	Hs.444971	NM_000503	ENSG00000104313	EYA1	BOP|BOR|BOS1|OFC1	EYA transcriptional coactivator and phosphatase 1	protein-coding
3962	chr3	130530615	130530833	+	0	NA	Intergenic	7SK|RNA|RNA	-38645	NM_001199182	27032	Hs.584884	NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
1147	chr12	32536609	32536620	+	0	NA	Intergenic	Intergenic	-102292	NM_001330374	121512	Hs.117835	NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
2783	chr18	65899986	65900063	+	0	NA	Intergenic	ERVL-int|LTR|ERVL	482329	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin related transmembrane protein 3	protein-coding
334	chr1	163796172	163796224	+	0	NA	Intergenic	Intergenic	-403217	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3 subunit J pseudogene	pseudo
4870	chr6	70887124	70887467	+	0	NA	intron (NM_001858, intron 42 of 50)	intron (NM_001858, intron 42 of 50)	105616	NM_078485	1297	Hs.590892	NM_001851	ENSG00000112280	COL9A1	DJ149L1.1.2|EDM6|MED|STL4	collagen type IX alpha 1 chain	protein-coding
3902	chr3	108107241	108107642	+	0	NA	intron (NM_014981, intron 39 of 41)	intron (NM_014981, intron 39 of 41)	76809	NM_001282557	11148	Hs.225968	NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HERV-H LTR-associating 2	protein-coding
2292	chr16	51068238	51068388	+	0	NA	intron (NR_110913, intron 2 of 2)	MamRep38|DNA|hAT	16644	NR_110913	101927334	Hs.555184	NR_110913	ENSG00000261637	LINC02127	-	long intergenic non-protein coding RNA 2127	ncRNA
3582	chr20	58516755	58516975	+	0	NA	intron (NM_001190827, intron 1 of 3)	intron (NM_001190827, intron 1 of 3)	1421	NM_001190827	63939	Hs.54973	NM_022106	ENSG00000196227	FAM217B	C20orf177|dJ551D2.5	family with sequence similarity 217 member B	protein-coding
1997	chr15	39043031	39043137	+	0	NA	Intergenic	Intergenic	54285	NM_207444	400359	Hs.448785	NM_207444	ENSG00000175779	C15orf53	-	chromosome 15 open reading frame 53	protein-coding
4675	chr6	19298465	19298634	+	0	NA	Intergenic	Intergenic	-117838	NR_110860	101928519	Hs.551771	NR_110860		LOC101928519	-	uncharacterized LOC101928519	ncRNA
5256	chr7	61794796	61794996	+	0	NA	Intergenic	HSATII|Satellite|Satellite	969538	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
1680	chr14	36894008	36894286	+	0	NA	Intergenic	Intergenic	88843	NR_138598	253970	Hs.509165	NM_001101341	ENSG00000229415	SFTA3	NANCI|SFTPH|SP-H	surfactant associated 3	protein-coding
2879	chr2	1167525	1168202	+	0	NA	intron (NM_018968, intron 7 of 16)	intron (NM_018968, intron 7 of 16)	-220785	NR_136151	101060391	Hs.120377	NR_136151		LOC101060391	-	uncharacterized LOC101060391	ncRNA
1139	chr12	31902646	31902661	+	0	NA	Intergenic	AluSc8|SINE|Alu	-20545	NM_001278412	196394	Hs.585084	NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
5984	chr9	92806686	92806956	+	0	NA	Intergenic	L1MB3|LINE|L1	-3040	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
1319	chr12	106254121	106254326	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	153671	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
5847	chr9	7778129	7778420	+	0	NA	Intergenic	Intergenic	21532	NM_001318058	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
4043	chr3	182082739	182083223	+	0	NA	Intergenic	Intergenic	121169	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA
1826	chr14	71176432	71176734	+	0	NA	intron (NR_125769, intron 3 of 3)	intron (NR_125769, intron 3 of 3)	11168	NR_125769	103695436	Hs.572296	NR_125769	ENSG00000258689	LINC01269	-	long intergenic non-protein coding RNA 1269	ncRNA
5995	chr9	93331025	93331035	+	0	NA	intron (NR_034157, intron 1 of 5)	MLT1J1-int|LTR|ERVL-MaLR	13998	NR_034157	340515	Hs.522284	NM_001105317		LINC01501	-	long intergenic non-protein coding RNA 1501	ncRNA
2454	chr17	30342764	30342902	+	0	NA	intron (NM_001321350, intron 1 of 14)	intron (NM_001321350, intron 1 of 14)	-5322	NM_052888	114659	Hs.514071	NM_052888	ENSG00000185158	LRRC37B	LRRC37	leucine rich repeat containing 37B	protein-coding
2077	chr15	69886638	69887440	+	0	NA	intron (NR_126438, intron 1 of 3)	intron (NR_126438, intron 1 of 3)	2500	NR_126437	104472713	Hs.430824	NR_126437	ENSG00000259641	PCAT29	-	prostate cancer associated transcript 29 (non-protein coding)	ncRNA
2036	chr15	58535326	58535683	+	0	NA	Intergenic	Intergenic	105109	NM_001320635	366	Hs.104624	NM_020980	ENSG00000103569	AQP9	AQP-9|HsT17287|SSC1|T17287	aquaporin 9	protein-coding
1747	chr14	61084790	61084967	+	0	NA	Intergenic	Intergenic	-21056	NR_126480	104548971		NR_126480		SALRNA1	SAL-RNA1|XLOC_023166	senescence associated long non-coding RNA 1	ncRNA
5588	chr8	29658459	29658500	+	0	NA	Intergenic	Intergenic	27541	NR_125817	101929470	Hs.204721	NR_125817	ENSG00000248964	LOC101929470	-	uncharacterized LOC101929470	ncRNA
820	chr11	20948418	20948590	+	0	NA	intron (NM_201551, intron 7 of 18)	intron (NM_201551, intron 7 of 18)	257407	NM_001288714	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding
5698	chr8	85240650	85240895	+	0	NA	intron (NM_001100391, intron 1 of 8)	intron (NM_001100391, intron 1 of 8)	143672	NM_001100391	138046	Hs.121663	NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
1799	chr14	68773591	68773756	+	0	NA	intron (NM_001321809, intron 8 of 11)	intron (NM_001321809, intron 8 of 11)	321831	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
1552	chr13	100395435	100395740	+	0	NA	intron (NR_120421, intron 4 of 4)	intron (NR_120421, intron 4 of 4)	-14332	NR_120383	101927465	Hs.130690	NR_046525		CLYBL-AS1	-	CLYBL antisense RNA 1	ncRNA
1194	chr12	48415774	48416154	+	0	NA	Intergenic	Intergenic	-17679	NM_033150	1280	Hs.408182	NM_001844	ENSG00000139219	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen type II alpha 1 chain	protein-coding
3716	chr21	41048327	41048457	+	0	NA	Intergenic	Intergenic	19145	NM_033170	10317	Hs.733638	NM_006057	ENSG00000183778	B3GALT5	B3GalT-V|B3GalTx|B3T5|GLCT5|beta-1,3-GalTase 5|beta-3-Gx-T5|beta3Gal-T5	beta-1,3-galactosyltransferase 5	protein-coding
5579	chr8	28949595	28949756	+	0	NA	intron (NM_015254, intron 37 of 39)	intron (NM_015254, intron 37 of 39)	170935	NM_015254	23303	Hs.444767	NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
4433	chr5	26553276	26553383	+	0	NA	Intergenic	Intergenic	485360	NM_016279	1007	Hs.272212	NM_016279	ENSG00000113100	CDH9	-	cadherin 9	protein-coding
41	chr1	16280653	16280901	+	0	NA	intron (NM_003443, intron 2 of 15)	intron (NM_003443, intron 2 of 15)	21850	NM_001324138	7709	Hs.433764	NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
3014	chr2	50353867	50353883	+	0	NA	intron (NM_001135659, intron 19 of 23)	intron (NM_001135659, intron 19 of 23)	-152534	NM_001320157	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
3084	chr2	80295361	80295482	+	0	NA	intron (NM_001282597, intron 7 of 18)	intron (NM_001282597, intron 7 of 18)	-201712	NR_107047	102465877		NR_107047	ENSG00000276917	MIR8080	hsa-mir-8080	microRNA 8080	ncRNA
2887	chr2	1859407	1859627	+	0	NA	intron (NM_001329845, intron 18 of 24)	intron (NM_001329845, intron 18 of 24)	-111198	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
1453	chr13	32620278	32620529	+	0	NA	intron (NM_023037, intron 1 of 60)	intron (NM_023037, intron 1 of 60)	-14627	NR_103839	100507099	Hs.536364	NR_103839		FRY-AS1	-	FRY antisense RNA 1	ncRNA
866	chr11	51570346	51570472	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	55127	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
5454	chr7	130004935	130004984	+	0	NA	TTS (NR_133928)	TTS (NR_133928)	2009	NR_133928	105375504	Hs.436058	NR_133928		LOC105375504	-	uncharacterized LOC105375504	ncRNA
2223	chr16	33873975	33874001	+	0	NA	Intergenic	Intergenic	88515	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
5118	chr7	4752581	4752756	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	30738	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
3532	chr20	29814194	29814210	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-31265	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
770	chr11	12824288	12824540	+	0	NA	intron (NM_021961, intron 3 of 12)	intron (NM_021961, intron 3 of 12)	128445	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
3380	chr2	213019214	213019401	+	0	NA	intron (NM_005235, intron 1 of 27)	intron (NM_005235, intron 1 of 27)	271777	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
4292	chr4	113974030	113974085	+	0	NA	intron (NM_001148, intron 1 of 45)	MER90a|LTR|ERV1	3272	NM_001148	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding
1097	chr12	5485709	5486061	+	0	NA	Intergenic	Intergenic	-55395	NM_001102654	4908	Hs.99171	NM_002527	ENSG00000185652	NTF3	HDNF|NGF-2|NGF2|NT-3|NT3	neurotrophin 3	protein-coding
641	chr10	42600734	42600742	+	0	NA	Intergenic	HSATII|Satellite|Satellite	262755	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
5964	chr9	82266640	82266952	+	0	NA	intron (NM_007005, intron 6 of 19)	intron (NM_007005, intron 6 of 19)	80108	NR_104239	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4	transducin like enhancer of split 4	protein-coding
4734	chr6	24000176	24000411	+	0	NA	Intergenic	Intergenic	-126121	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
838	chr11	31376584	31376750	+	0	NA	intron (NM_181807, intron 1 of 8)	intron (NM_181807, intron 1 of 8)	14690	NM_181807	341019	Hs.127405	NM_181807	ENSG00000170959	DCDC1	-	doublecortin domain containing 1	protein-coding
2962	chr2	25008497	25008941	+	0	NA	Intergenic	Intergenic	-7265	NR_136184	79172	Hs.731569	NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
2664	chr18	35877176	35877343	+	0	NA	Intergenic	Intergenic	640161	NR_036202	100422857		NR_036202	ENSG00000266530	MIR4318	-	microRNA 4318	ncRNA
616	chr10	39128937	39128973	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	139228	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
5019	chr6	111972146	111972845	+	0	NA	Intergenic	Intergenic	-45018	NM_147686	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
1121	chr12	16266235	16266238	+	0	NA	Intergenic	Intergenic	164383	NM_001170798	729025	Hs.692712	NM_001170798	ENSG00000188991	SLC15A5	-	solute carrier family 15 member 5	protein-coding
870	chr11	51572202	51572285	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	56961	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
4245	chr4	77176774	77176934	+	0	NA	intron (NM_001242939, intron 1 of 6)	L1ME5|LINE|L1	4001	NM_001136570	100129583	Hs.720509	NM_001136570	ENSG00000189157	FAM47E	-	family with sequence similarity 47 member E	protein-coding
6493	chrY	58973270	58973400	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	-127068	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
6075	chr9	135347709	135348307	+	0	NA	intron (NM_001282957, intron 1 of 5)	AluJr|SINE|Alu	62425	NM_001282957	389799	Hs.201709	NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
896	chr11	51587279	51587472	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	72093	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
5593	chr8	33937167	33937345	+	0	NA	Intergenic	L2c|LINE|L2	-479632	NM_024025	78986	Hs.8719	NM_024025	ENSG00000133878	DUSP26	DSP-4|DUSP24|LDP-4|MKP-8|MKP8|NATA1|NEAP|SKRP3	dual specificity phosphatase 26	protein-coding
3530	chr20	29814104	29814114	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-31358	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
5539	chr8	6649500	6649733	+	0	NA	Intergenic	MER51E|LTR|ERV1	-43460	NR_045217	100652791	Hs.369771	NR_045217	ENSG00000245857	GS1-24F4.2	-	uncharacterized LOC100652791	ncRNA
3672	chr21	36250738	36251228	+	0	NA	intron (NM_001001890, intron 2 of 5)	intron (NM_001001890, intron 2 of 5)	10004	NM_001122607	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
2903	chr2	4320422	4320630	+	0	NA	Intergenic	Intergenic	298775	NR_136322	105373394	Hs.742693	NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
4934	chr6	90896530	90896612	+	0	NA	intron (NM_021813, intron 4 of 8)	MIRb|SINE|MIR	110056	NM_021813	60468	Hs.269764	NM_021813	ENSG00000112182	BACH2	BTBD25	BTB domain and CNC homolog 2	protein-coding
2165	chr16	8814668	8814817	+	0	NA	5' UTR (NM_001127448, exon 1 of 16)	5' UTR (NM_001127448, exon 1 of 16)	169	NM_001127448	18	Hs.336768	NM_000663	ENSG00000183044	ABAT	GABA-AT|GABAT|NPD009	4-aminobutyrate aminotransferase	protein-coding
5096	chr6	169989964	169990194	+	0	NA	intron (NM_182552, intron 23 of 25)	intron (NM_182552, intron 23 of 25)	112080	NM_182552	253769	Hs.131903	NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
2347	chr16	67816955	67817730	+	0	NA	intron (NM_001320238, intron 1 of 12)	intron (NM_001320238, intron 1 of 12)	23213	NM_020850	57610	Hs.368569	NM_020850	ENSG00000141084	RANBP10	-	RAN binding protein 10	protein-coding
6470	chrY	13868667	13868754	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	664679	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4310	chr4	129768492	129768704	+	0	NA	intron (NM_001287437, intron 4 of 10)	intron (NM_001287437, intron 4 of 10)	35599	NM_001287443	79960	Hs.12420	NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
777	chr11	13157154	13157550	+	0	NA	Intergenic	Intergenic	126382	NM_001080521	644943	Hs.134650	NM_001080521	ENSG00000189431	RASSF10	-	Ras association domain family member 10	protein-coding
6129	chrUn_gl000216	6332	6364	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5045	chr6	138806317	138806506	+	0	NA	intron (NM_001144060, intron 2 of 7)	intron (NM_001144060, intron 2 of 7)	14168	NM_001144060	57224	Hs.652741	NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
3609	chr21	10780422	10780614	+	0	NA	Intergenic	(GAATG)n|Simple_repeat|Simple_repeat	210425	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2786	chr18	65900096	65900663	+	0	NA	Intergenic	ERVL-int|LTR|ERVL	481974	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin related transmembrane protein 3	protein-coding
5747	chr8	102408133	102408350	+	0	NA	Intergenic	L2b|LINE|L2	27120	NR_002182	83955	Hs.567608	NM_032031	ENSG00000228224	NACAP1	FKSG17	nascent polypeptide associated complex alpha subunit pseudogene 1	pseudo
3968	chr3	132280313	132280476	+	0	NA	intron (NR_132427, intron 15 of 17)	intron (NR_132427, intron 15 of 17)	-35687	NM_016557	51554	Hs.310512	NM_016557	ENSG00000129048	ACKR4	CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding
1672	chr14	36815268	36815388	+	0	NA	Intergenic	Intergenic	-25446	NM_001308110	51562	Hs.368647	NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
2325	chr16	53125979	53126154	+	0	NA	intron (NM_025134, intron 1 of 38)	intron (NM_025134, intron 1 of 38)	37121	NM_025134	80205	Hs.59159	NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
1685	chr14	37210946	37211086	+	0	NA	intron (NM_030631, intron 3 of 9)	intron (NM_030631, intron 3 of 9)	84243	NM_006194	5083	Hs.132576	NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding
6225	chrUn_gl000225	127188	127531	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
1891	chr14	85340204	85340675	+	0	NA	Intergenic	Intergenic	-513180	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
4924	chr6	90687932	90688048	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	83802	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
3941	chr3	124239908	124239932	+	0	NA	intron (NM_001024660, intron 33 of 59)	intron (NM_001024660, intron 33 of 59)	-63586	NM_001322993	8997	Hs.8004	NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
2768	chr18	60349519	60349894	+	0	NA	Intergenic	Intergenic	-32966	NM_194449	23239	Hs.465337	NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
562	chr10	38817652	38817894	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	100699	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
5203	chr7	50620137	50620257	+	0	NA	intron (NM_001082971, intron 1 of 14)	intron (NM_001082971, intron 1 of 14)	8571	NM_001242887	1644	Hs.359698	NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase	protein-coding
2269	chr16	35239599	35239737	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	258745	NR_033985	400533	Hs.499135	NR_033985	ENSG00000261122	FLJ26245	-	uncharacterized LOC400533	ncRNA
1102	chr12	6480683	6480691	+	0	NA	intron (NM_001159576, intron 1 of 11)	intron (NM_001159576, intron 1 of 11)	3703	NM_001159576	6337	Hs.591047	NM_001038	ENSG00000111319	SCNN1A	BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1	sodium channel epithelial 1 alpha subunit	protein-coding
183	chr1	75759273	75759273	+	0	NA	intron (NM_001320285, intron 7 of 25)	intron (NM_001320285, intron 7 of 25)	158706	NM_001256114	431707	Hs.403934	NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
6481	chrY	28784508	28784521	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	909877	NR_002176	474148	Hs.511777	NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis-specific transcript, Y-linked 3B (non-protein coding)	ncRNA
2544	chr17	79369453	79369521	+	0	NA	Intergenic	CpG	-4034	NM_001291324	57597	Hs.514580	NM_024696	ENSG00000266074	BAHCC1	BAHD2	BAH domain and coiled-coil containing 1	protein-coding
1478	chr13	49390469	49390642	+	0	NA	Intergenic	Intergenic	-159493	NM_001079673	22862	Hs.508010	NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
2541	chr17	79368947	79369071	+	0	NA	Intergenic	CpG	-4512	NM_001291324	57597	Hs.514580	NM_024696	ENSG00000266074	BAHCC1	BAHD2	BAH domain and coiled-coil containing 1	protein-coding
439	chr1	209204562	209204586	+	0	NA	Intergenic	L2a|LINE|L2	-294227	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
362	chr1	180556261	180556505	+	0	NA	Intergenic	AluJb|SINE|Alu	28273	NR_125716	148756		NR_125716	ENSG00000236719	OVAAL	LINC01131|OVAL	ovarian adenocarcinoma amplified long non-coding RNA	ncRNA
5846	chr9	7777807	7778128	+	0	NA	Intergenic	Intergenic	21839	NM_001318058	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
1379	chr12	119696505	119696839	+	0	NA	Intergenic	Intergenic	44513	NR_024246	144742	Hs.524782	NR_024246	ENSG00000281196	LINC00934	-	long intergenic non-protein coding RNA 934	ncRNA
2607	chr18	21590054	21590217	+	0	NA	intron (NR_110796, intron 2 of 5)	MER57B2|LTR|ERV1	-4249	NM_001135993	125488	Hs.128576	NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
6397	chrY	13801209	13801230	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	732170	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3345	chr2	200175828	200175854	+	0	NA	intron (NM_001172509, intron 9 of 10)	intron (NM_001172509, intron 9 of 10)	146978	NR_134967	23314	Hs.516617	NM_015265	ENSG00000119042	SATB2	GLSS	SATB homeobox 2	protein-coding
6420	chrY	13819927	13820040	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	713406	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4598	chr5	153866103	153866243	+	0	NA	Intergenic	Intergenic	-8349	NM_004821	9421	Hs.152531	NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
4839	chr6	58775679	58775947	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-488089	NR_132996	106660612	Hs.561539	NR_125727	ENSG00000215190	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
3798	chr22	39320377	39320761	+	0	NA	Intergenic	Charlie25|DNA|hAT-Charlie	-32958	NM_145699	200315	Hs.226307	NM_145699	ENSG00000128383	APOBEC3A	A3A|ARP3|PHRBN|bK150C2.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3A	protein-coding
2496	chr17	56494836	56494990	+	0	NA	promoter-TSS (NM_001305544)	promoter-TSS (NM_001305544)	30	NM_017763	54894	Hs.584916	NM_017763	ENSG00000108375	RNF43	RNF124|SSPCS|URCC	ring finger protein 43	protein-coding
407	chr1	203621311	203621479	+	0	NA	intron (NM_001684, intron 1 of 20)	AluSz|SINE|Alu	25480	NM_001684	493	Hs.343522	NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
5351	chr7	91264389	91264685	+	0	NA	Intergenic	Intergenic	245497	NM_001301135	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF1	MTERF	mitochondrial transcription termination factor 1	protein-coding
3686	chr21	37052154	37052396	+	0	NA	Intergenic	L3|LINE|CR1	-40738	NR_030414	768219		NR_030414	ENSG00000211590	MIR802	MIRN802|hsa-mir-802	microRNA 802	ncRNA
4374	chr4	184644362	184644801	+	0	NA	Intergenic	Intergenic	64161	NM_199053	60684	Hs.443240	NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY|LGMD2S	trafficking protein particle complex 11	protein-coding
18	chr1	726852	726913	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-12814	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
376	chr1	183517484	183517831	+	0	NA	intron (NM_001331007, intron 19 of 23)	intron (NM_001331007, intron 19 of 23)	42082	NM_001190794	4688	Hs.587558	NM_000433	ENSG00000116701	NCF2	NCF-2|NOXA2|P67-PHOX|P67PHOX	neutrophil cytosolic factor 2	protein-coding
4511	chr5	110783671	110783819	+	0	NA	intron (NM_001323374, intron 7 of 11)	intron (NM_001323374, intron 7 of 11)	-64179	NR_040093	100505678	Hs.745061	NR_040093	ENSG00000246859	STARD4-AS1	-	STARD4 antisense RNA 1	ncRNA
5826	chr9	513439	513526	+	0	NA	intron (NM_015158, intron 1 of 11)	intron (NM_015158, intron 1 of 11)	8787	NM_015158	23189	Hs.306764	NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
1393	chr12	125071219	125071599	+	0	NA	Intergenic	Intergenic	-19399	NM_001206654	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
1167	chr12	34846877	34846890	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	671667	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
609	chr10	39121411	39121485	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	131721	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
6252	chrX	7533058	7533200	+	0	NA	Intergenic	Intergenic	-277174	NM_013452	26609	Hs.278906	NM_013452	ENSG00000182583	VCX	VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1	variable charge, X-linked	protein-coding
5615	chr8	43096784	43096829	+	0	NA	Intergenic	SAR|Satellite|Satellite	-50779	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
5490	chr7	141116440	141116597	+	0	NA	intron (NM_001195278, intron 2 of 3)	intron (NM_001195278, intron 2 of 3)	-134560	NM_018238	55750	Hs.743318	NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
4790	chr6	38183013	38183096	+	0	NA	intron (NM_001099272, intron 9 of 10)	intron (NM_001099272, intron 9 of 10)	-266318	NR_144472	101929425	Hs.665280	NR_144472		BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
3652	chr21	10855979	10856037	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	134935	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
3373	chr2	211546324	211546515	+	0	NA	Intergenic	Intergenic	64124	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
5248	chr7	61784196	61784271	+	0	NA	Intergenic	HSATII|Satellite|Satellite	980201	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
148	chr1	59544092	59544156	+	0	NA	intron (NR_110626, intron 2 of 2)	MIRb|SINE|MIR	57976	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
6453	chrY	13859785	13859827	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	673583	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5567	chr8	25856290	25856348	+	0	NA	intron (NM_022659, intron 6 of 15)	intron (NM_022659, intron 6 of 15)	46321	NM_022659	64641	Hs.491292	NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	early B-cell factor 2	protein-coding
6067	chr9	129200676	129200731	+	0	NA	intron (NM_033446, intron 7 of 9)	intron (NM_033446, intron 7 of 9)	-27920	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	non-protein coding RNA, repressor of NFAT	ncRNA
1343	chr12	114677676	114677906	+	0	NA	Intergenic	Intergenic	166177	NM_181486	6910	Hs.381715	NM_000192	ENSG00000089225	TBX5	HOS	T-box 5	protein-coding
4948	chr6	92750582	92750895	+	0	NA	Intergenic	Intergenic	-350592	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA
2489	chr17	55110884	55111125	+	0	NA	Intergenic	Intergenic	-11835	NR_002818	376412	Hs.132299	NR_002818	ENSG00000261192	RNF126P1	-	ring finger protein 126 pseudogene 1	pseudo
2655	chr18	35094653	35094942	+	0	NA	intron (NM_001025087, intron 1 of 12)	intron (NM_001025087, intron 1 of 12)	-48330	NR_132967	106635546		NR_132967		SNORA111	-	small nucleolar RNA, H/ACA box 111	snoRNA
726	chr10	100117053	100117389	+	0	NA	Intergenic	Intergenic	37843	NR_031619	100302133		NR_031619	ENSG00000119943	MIR1287	MIRN1287|hsa-mir-1287|mir-1287	microRNA 1287	ncRNA
2509	chr17	64173010	64173014	+	0	NA	exon (NM_001302891, exon 3 of 25)	exon (NM_001302891, exon 3 of 25)	14975	NM_001302891	201134	Hs.408676	NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO	centrosomal protein 112	protein-coding
6241	chrUn_gl000228	117914	117928	+	0	NA	intron (NR_137167, intron 2 of 5)	BSR/Beta|Satellite|Satellite	5316	NM_001306068	100288687	Hs.728749	NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
2955	chr2	18082509	18082547	+	0	NA	intron (NM_002252, intron 1 of 2)	intron (NM_002252, intron 1 of 2)	22604	NM_002252	3790	Hs.414489	NM_002252	ENSG00000170745	KCNS3	KV9.3	potassium voltage-gated channel modifier subfamily S member 3	protein-coding
2703	chr18	45490291	45490520	+	0	NA	Intergenic	Intergenic	-32888	NM_001003652	4087	Hs.12253	NM_005901	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
4919	chr6	90684438	90684868	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	80465	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
6061	chr9	128666609	128666645	+	0	NA	intron (NR_024123, intron 2 of 6)	intron (NR_024123, intron 2 of 6)	156149	NM_001134778	5090	Hs.428027	NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
4210	chr4	49651805	49653355	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	663921	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
4110	chr4	23820790	23821121	+	0	NA	intron (NM_013261, intron 7 of 12)	MamRep38|DNA|hAT	61960	NM_001330753	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
157	chr1	62392334	62392442	+	0	NA	intron (NM_176877, intron 26 of 42)	intron (NM_176877, intron 26 of 42)	-152070	NR_036058	100422902		NR_036058	ENSG00000263908	MIR3116-1	-	microRNA 3116-1	ncRNA
964	chr11	92419339	92419893	+	0	NA	intron (NM_001008781, intron 2 of 24)	MamRep434|DNA|TcMar-Tigger	229178	NR_135091	105369431	Hs.532389	NR_135091		LOC105369431	-	uncharacterized LOC105369431	ncRNA
2009	chr15	44213372	44213607	+	0	NA	intron (NM_001322951, intron 1 of 14)	intron (NM_001322951, intron 1 of 14)	-43120	NR_003571	728758	Hs.658099	NR_003571		PIN4P1	-	peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1	pseudo
1909	chr14	89030939	89030999	+	0	NA	intron (NM_001326300, intron 2 of 15)	Charlie1a|DNA|hAT-Charlie	1278	NM_001326316	79882	Hs.684046	NM_024824	ENSG00000100722	ZC3H14	MRT56|MSUT-2|NY-REN-37|SUT2|UKp68	zinc finger CCCH-type containing 14	protein-coding
4192	chr4	49635192	49635194	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	646534	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
935	chr11	71073415	71074547	+	0	NA	Intergenic	(TGAG)n|Simple_repeat|Simple_repeat	60419	NR_038862	399923	Hs.128191	NM_001001680	ENSG00000172900	FLJ42102	-	uncharacterized LOC399923	ncRNA
2627	chr18	31385462	31385558	+	0	NA	Intergenic	Intergenic	226969	NM_030632	80816	Hs.464876	NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	additional sex combs like 3, transcriptional regulator	protein-coding
3576	chr20	47299537	47299571	+	0	NA	intron (NM_020820, intron 10 of 39)	intron (NM_020820, intron 10 of 39)	144866	NM_020820	57580	Hs.153310	NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
1213	chr12	68742863	68743289	+	0	NA	Intergenic	Intergenic	-16915	NM_020128	56890	Hs.655702	NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
1093	chr12	3904964	3905081	+	0	NA	Intergenic	Intergenic	-42656	NM_032680	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
81	chr1	35942222	35942426	+	0	NA	intron (NM_024874, intron 4 of 20)	intron (NM_024874, intron 4 of 20)	80713	NM_024874	79932	Hs.456507	NM_024874	ENSG00000142687	KIAA0319L	AAVR	KIAA0319 like	protein-coding
1300	chr12	104193868	104194103	+	0	NA	intron (NM_001031701, intron 4 of 13)	intron (NM_001031701, intron 4 of 13)	40990	NM_001031701	51559	Hs.48428	NM_016575	ENSG00000111696	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
624	chr10	42355325	42357594	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	507034	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
2598	chr18	18748338	18748510	+	0	NA	Intergenic	AluJb|SINE|Alu	-56612	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
6323	chrX	109923340	109923437	+	0	NA	intron (NM_001143981, intron 10 of 11)	intron (NM_001143981, intron 10 of 11)	115688	NM_145234	91851	Hs.496587	NM_145234	ENSG00000101938	CHRDL1	CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1	chordin like 1	protein-coding
371	chr1	182671815	182671951	+	0	NA	Intergenic	Intergenic	-29816	NM_001102450	85397	Hs.20982	NM_033345	ENSG00000135824	RGS8	-	regulator of G-protein signaling 8	protein-coding
6209	chrUn_gl000216	155418	155678	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
204	chr1	86875528	86875830	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	-13654	NM_001184765	57489	Hs.149360	NM_020729	ENSG00000122417	ODF2L	dJ977L11.1	outer dense fiber of sperm tails 2 like	protein-coding
5190	chr7	36647473	36647660	+	0	NA	intron (NM_001637, intron 11 of 20)	intron (NM_001637, intron 11 of 20)	-7840	NR_046764	100874264	Hs.690994	NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
1041	chr11	125999991	126000085	+	0	NA	Intergenic	Intergenic	-66851	NM_001243597	50937	Hs.38034	NM_016952	ENSG00000064309	CDON	CDO|CDON1|HPE11|ORCAM	cell adhesion associated, oncogene regulated	protein-coding
6080	chr9	140222804	140222928	+	0	NA	intron (NM_017820, intron 17 of 21)	intron (NM_017820, intron 17 of 21)	-26163	NM_001004354	441478	Hs.535075	NM_001004354	ENSG00000198435	NRARP	-	NOTCH-regulated ankyrin repeat protein	protein-coding
1990	chr15	31208638	31208750	+	0	NA	intron (NM_014967, intron 5 of 14)	intron (NM_014967, intron 5 of 14)	12618	NM_014967	22909	Hs.584863	NM_014967	ENSG00000198690	FAN1	KIAA1018|KMIN|MTMR15|hFAN1	FANCD2 and FANCI associated nuclease 1	protein-coding
4611	chr5	158498113	158498174	+	0	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	28627	NM_001324101	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
3254	chr2	146188894	146189137	+	0	NA	Intergenic	Intergenic	763481	NR_033870	401014	Hs.742290	NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
814	chr11	20510289	20510499	+	0	NA	intron (NM_005788, intron 13 of 15)	intron (NM_005788, intron 13 of 15)	101318	NM_005788	10196	Hs.152337	NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
5235	chr7	61083395	61083969	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1680752	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
2492	chr17	55129763	55129776	+	0	NA	Intergenic	FRAM|SINE|Alu	6930	NR_002818	376412	Hs.132299	NR_002818	ENSG00000261192	RNF126P1	-	ring finger protein 126 pseudogene 1	pseudo
5192	chr7	39123776	39123874	+	0	NA	intron (NM_001166018, intron 2 of 10)	intron (NM_001166018, intron 2 of 10)	-70658	NR_138047	100689074	Hs.675876	NR_138047		POU6F2-AS2	-	POU6F2 antisense RNA 2	ncRNA
2109	chr15	76691079	76691177	+	0	NA	intron (NM_001145923, intron 27 of 31)	intron (NM_001145923, intron 27 of 31)	62063	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
884	chr11	51581187	51581189	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	65906	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
5133	chr7	11215827	11216042	+	0	NA	Intergenic	Intergenic	202435	NR_033435	9678	Hs.655688	NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
4927	chr6	90708859	90708949	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	104716	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
3539	chr20	29821979	29822069	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-23443	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
6311	chrX	61839110	61839139	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	732094	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
6205	chrUn_gl000216	154938	155020	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
4910	chr6	84604607	84604826	+	0	NA	intron (NM_016230, intron 3 of 15)	intron (NM_016230, intron 3 of 15)	35346	NM_016230	51167	Hs.5741	NM_016230	ENSG00000065615	CYB5R4	NCB5OR|cb5/cb5R|dJ676J13.1	cytochrome b5 reductase 4	protein-coding
749	chr11	7618322	7618850	+	0	NA	exon (NM_001256568, exon 1 of 21)	exon (NM_001256568, exon 1 of 21)	169	NM_001256568	8495	Hs.655714	NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
345	chr1	169154117	169154184	+	0	NA	intron (NM_197972, intron 10 of 11)	MER63A|DNA|hAT-Blackjack	78203	NM_001677	481	Hs.291196	NM_001677	ENSG00000143153	ATP1B1	ATP1B	ATPase Na+/K+ transporting subunit beta 1	protein-coding
3323	chr2	177392364	177392528	+	0	NA	Intergenic	Intergenic	73334	NR_031648	100302142		NR_031648	ENSG00000283203	MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
4408	chr5	7209092	7209210	+	0	NA	Intergenic	Intergenic	60316	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
4846	chr6	61901678	61901955	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-382192	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
6059	chr9	126968801	126968965	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-51002	NM_001166167	10783	Hs.197071	NM_014397	ENSG00000119408	NEK6	SID6-1512	NIMA related kinase 6	protein-coding
613	chr10	39124700	39124755	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	135000	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
5141	chr7	14428889	14429226	+	0	NA	intron (NM_145695, intron 20 of 23)	intron (NM_145695, intron 20 of 23)	-398007	NM_001163148	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding
5181	chr7	30265421	30265702	+	0	NA	Intergenic	Intergenic	-58362	NM_147128	223082	Hs.263912	NM_147128	ENSG00000180233	ZNRF2	RNF202	zinc and ring finger 2	protein-coding
952	chr11	74352854	74352922	+	0	NA	non-coding (NR_046409, exon 11 of 11)	non-coding (NR_046409, exon 11 of 11)	49238	NR_046410	10714	Hs.82502	NM_006591	ENSG00000077514	POLD3	P66|P68|PPP1R128	DNA polymerase delta 3, accessory subunit	protein-coding
2691	chr18	42711350	42711452	+	0	NA	Intergenic	Intergenic	-81546	NM_001242692	8170	Hs.710927	NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
4804	chr6	46850132	46850509	+	0	NA	intron (NM_001098518, intron 6 of 20)	LTR16B2|LTR|ERVL	-20888	NR_110658	101926962	Hs.680113	NR_110658		LOC101926962	-	uncharacterized LOC101926962	ncRNA
4498	chr5	92298410	92298540	+	0	NA	Intergenic	Intergenic	608574	NR_109825	441094	Hs.457407	NR_015369	ENSG00000237187	NR2F1-AS1	-	NR2F1 antisense RNA 1	ncRNA
1071	chr11	129723814	129723896	+	0	NA	intron (NM_138788, intron 2 of 5)	intron (NM_138788, intron 2 of 5)	38179	NM_001331211	120224	Hs.504301	NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
3058	chr2	68055112	68055145	+	0	NA	Intergenic	Intergenic	-2434	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
5286	chr7	68235640	68235961	+	0	NA	Intergenic	Intergenic	750560	NR_120514	102723427	Hs.583491	NR_120514	ENSG00000225209	LOC102723427	-	uncharacterized LOC102723427	ncRNA
4331	chr4	140927074	140927168	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	148112	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
253	chr1	116851990	116852223	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-63689	NM_000701	476	Hs.371889	NM_000701	ENSG00000163399	ATP1A1	-	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
4158	chr4	49136427	49137352	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	148230	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
5388	chr7	107999187	107999354	+	0	NA	intron (NM_005010, intron 2 of 27)	intron (NM_005010, intron 2 of 27)	97571	NM_001193584	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
5928	chr9	70009659	70009669	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	169151	NM_001126334	653427	Hs.714683	NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4-like 5	protein-coding
3278	chr2	159829709	159830051	+	0	NA	intron (NM_033394, intron 1 of 26)	intron (NM_033394, intron 1 of 26)	4734	NM_033394	85461	Hs.61590	NM_033394	ENSG00000115183	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
2427	chr17	25263672	25263711	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	152576	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
63	chr1	31329359	31329506	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	52048	NM_014654	9672	Hs.158287	NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
5817	chr8	141224122	141224355	+	0	NA	intron (NM_031466, intron 17 of 22)	intron (NM_031466, intron 17 of 22)	-113604	NR_144431	359809	Hs.26814	NR_144431		PEG13	-	paternally expressed 13	ncRNA
5009	chr6	110884992	110885280	+	0	NA	Intergenic	MIR|SINE|MIR	-87292	NM_033125	85413	Hs.520319	NM_033125	ENSG00000004809	SLC22A16	CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 member 16	protein-coding
1637	chr14	21788536	21788719	+	0	NA	intron (NM_020366, intron 11 of 23)	AluYf4|SINE|Alu	32491	NM_020366	57096	Hs.126035	NM_020366	ENSG00000092200	RPGRIP1	CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding
6393	chrY	13704307	13704406	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	829033	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
6377	chrY	13458599	13459766	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1074207	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5949	chr9	72653030	72653080	+	0	NA	Intergenic	Intergenic	-5442	NM_001347990	256691	Hs.547172	NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding
179	chr1	75430251	75430402	+	0	NA	Intergenic	Intergenic	-163793	NM_001001933	431707	Hs.403934	NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
1105	chr12	6482887	6483030	+	0	NA	intron (NM_001159576, intron 1 of 11)	intron (NM_001159576, intron 1 of 11)	1432	NM_001159576	6337	Hs.591047	NM_001038	ENSG00000111319	SCNN1A	BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1	sodium channel epithelial 1 alpha subunit	protein-coding
3705	chr21	38439692	38439742	+	0	NA	intron (NM_016430, intron 4 of 5)	intron (NM_016430, intron 4 of 5)	-3351	NR_131189	105372795	Hs.528019	NR_131189		LOC105372795	-	uncharacterized LOC105372795	ncRNA
1334	chr12	112547253	112547273	+	0	NA	promoter-TSS (NM_024953)	promoter-TSS (NM_024953)	-628	NM_024953	80018	Hs.530941	NM_024953	ENSG00000111300	NAA25	C12orf30|MDM20|NAP1	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding
3948	chr3	124980181	124980575	+	0	NA	intron (NM_021964, intron 7 of 8)	L2|LINE|L2	-48769	NM_024628	84561	Hs.658514	NM_024628	ENSG00000221955	SLC12A8	CCC9	solute carrier family 12 member 8	protein-coding
2499	chr17	56495345	56495519	+	0	NA	promoter-TSS (NM_001305544)	promoter-TSS (NM_001305544)	-489	NM_001305544	54894	Hs.584916	NM_017763	ENSG00000108375	RNF43	RNF124|SSPCS|URCC	ring finger protein 43	protein-coding
3776	chr22	28729570	28729611	+	0	NA	intron (NM_001145418, intron 2 of 22)	intron (NM_001145418, intron 2 of 22)	-126267	NR_106713	102466081		NR_106713	ENSG00000276162	MIR5739	hsa-mir-5739	microRNA 5739	ncRNA
2805	chr19	5961920	5961970	+	0	NA	intron (NM_003624, intron 1 of 16)	L2a|LINE|L2	16375	NM_001300865	8498	Hs.531752	NM_003624	ENSG00000031823	RANBP3	-	RAN binding protein 3	protein-coding
2096	chr15	74515666	74515678	+	0	NA	Intergenic	Intergenic	-12958	NM_025055	80125	Hs.383206	NM_025055	ENSG00000140481	CCDC33	CT61|HP11097	coiled-coil domain containing 33	protein-coding
1784	chr14	67945462	67945757	+	0	NA	intron (NM_182526, intron 2 of 2)	L1ME4a|LINE|L1	36412	NM_182526	161145	Hs.509707	NM_182526	ENSG00000198133	TMEM229B	C14orf83	transmembrane protein 229B	protein-coding
938	chr11	72019667	72019931	+	0	NA	intron (NM_030813, intron 8 of 16)	intron (NM_030813, intron 8 of 16)	-64579	NM_005169	401	Hs.731115	NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2a	protein-coding
4016	chr3	176448121	176448195	+	0	NA	Intergenic	Intergenic	86631	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
3882	chr3	99630685	99630920	+	0	NA	intron (NR_031662, intron 1 of 4)	intron (NR_031662, intron 1 of 4)	-35755	NM_001282793	11259	Hs.104672	NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
2149	chr15	101679992	101680123	+	0	NA	Intergenic	Intergenic	112080	NM_014918	22856	Hs.110488	NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
1830	chr14	74607124	74607170	+	0	NA	intron (NM_001024674, intron 5 of 5)	intron (NM_001024674, intron 5 of 5)	55491	NM_001024674	91750	Hs.612866	NM_001024674	ENSG00000205659	LIN52	C14orf46|c14_5549	lin-52 DREAM MuvB core complex component	protein-coding
1620	chr13	113557957	113558118	+	0	NA	Intergenic	Intergenic	64915	NR_034002	100289410	Hs.667436	NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
2241	chr16	33899506	33899670	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	62915	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
5914	chr9	66970932	66970955	+	0	NA	intron (NR_135597, intron 4 of 4).3	intron (NR_135597, intron 4 of 4).3	47976	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
3917	chr3	114121294	114121454	+	0	NA	intron (NM_001164343, intron 8 of 11)	intron (NM_001164343, intron 8 of 11)	-18885	NM_001164342	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
3060	chr2	68055580	68055685	+	0	NA	Intergenic	Intergenic	-2938	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
3167	chr2	92281248	92281756	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	152343	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
6433	chrY	13842568	13842623	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	690794	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5695	chr8	85166244	85166254	+	0	NA	intron (NM_001100391, intron 1 of 8)	MER81|DNA|hAT-Blackjack	69149	NM_001100391	138046	Hs.121663	NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
6466	chrY	13868319	13868349	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	665055	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4203	chr4	49643977	49645434	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	656046	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
6142	chrUn_gl000216	11140	11160	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
2370	chr16	78218453	78218602	+	0	NA	intron (NM_001291997, intron 4 of 7)	intron (NM_001291997, intron 4 of 7)	85217	NM_001291997	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
929	chr11	67594266	67594537	+	0	NA	Intergenic	Intergenic	-21594	NR_024249	645332	Hs.535094	NR_024249	ENSG00000160172	FAM86C2P	-	family with sequence similarity 86, member A pseudogene	pseudo
5199	chr7	45881659	45881998	+	0	NA	Intergenic	L1ME2z|LINE|L1	-46131	NM_000596	3484	Hs.642938	NM_000596	ENSG00000146678	IGFBP1	AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1	insulin like growth factor binding protein 1	protein-coding
2554	chr18	110038	110949	+	0	NA	intron (NR_033770, intron 1 of 4)	BSR/Beta|Satellite|Satellite	1428	NR_033770	727758	Hs.585843	NR_033770	ENSG00000263006	ROCK1P1	-	Rho associated coiled-coil containing protein kinase 1 pseudogene 1	pseudo
1583	chr13	107863059	107863357	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	320388	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
1538	chr13	98253046	98253251	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	166673	NM_021033	5911	Hs.508480	NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
5740	chr8	101464239	101464609	+	0	NA	Intergenic	Intergenic	69433	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
258	chr1	117015482	117015890	+	0	NA	intron (NR_125973, intron 2 of 3)	MIRb|SINE|MIR	5762	NR_125972	101929023	Hs.668091	NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
2620	chr18	26740188	26740475	+	0	NA	Intergenic	Intergenic	-982921	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
5158	chr7	27072393	27072447	+	0	NA	Intergenic	Intergenic	63205	NM_005522	3198	Hs.67397	NM_005522	ENSG00000105991	HOXA1	BSAS|HOX1|HOX1F	homeobox A1	protein-coding
5723	chr8	94531691	94531795	+	0	NA	intron (NR_033858, intron 7 of 10)	MLT1H|LTR|ERVL-MaLR	180918	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	ncRNA
4022	chr3	176638489	176638997	+	0	NA	Intergenic	Intergenic	-103954	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
6272	chrX	47400548	47400872	+	0	NA	Intergenic	Intergenic	-19789	NM_001654	369	Hs.446641	NM_001654	ENSG00000078061	ARAF	A-RAF|ARAF1|PKS2|RAFA1	A-Raf proto-oncogene, serine/threonine kinase	protein-coding
2138	chr15	97243526	97243660	+	0	NA	Intergenic	Intergenic	81291	NR_102754	100652749	Hs.303588	NR_102753	ENSG00000259282	SPATA8-AS1	-	SPATA8 antisense RNA 1 (head to head)	ncRNA
1055	chr11	126854578	126855339	+	0	NA	intron (NM_032531, intron 1 of 16)	MIRc|SINE|MIR	3480	NR_036126	100422918		NR_036126	ENSG00000266215	MIR3167	-	microRNA 3167	ncRNA
4050	chr3	182314849	182315162	+	0	NA	Intergenic	Intergenic	-90093	NR_134941	105374244	Hs.130176	NR_134941	ENSG00000244247	LINC01995	-	long intergenic non-protein coding RNA 1995	ncRNA
3610	chr21	10780615	10780621	+	0	NA	Intergenic	(GAATG)n|Simple_repeat|Simple_repeat	210325	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2447	chr17	25617659	25618031	+	0	NA	Intergenic	L2|LINE|L2	3177	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	ncRNA
6479	chrY	28784349	28784354	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	909714	NR_002176	474148	Hs.511777	NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis-specific transcript, Y-linked 3B (non-protein coding)	ncRNA
3140	chr2	90372280	90372539	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1260525	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
141	chr1	58143704	58143788	+	0	NA	intron (NM_021080, intron 2 of 16)	MER5B|DNA|hAT-Charlie	-182469	NR_104363	101926890	Hs.662207	NR_104362	ENSG00000226759	DAB1-AS1	-	DAB1 antisense RNA 1	ncRNA
6164	chrUn_gl000216	23698	23780	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
3043	chr2	60860771	60861275	+	0	NA	Intergenic	Intergenic	-80390	NM_138559	53335	Hs.370549	NM_018014	ENSG00000119866	BCL11A	BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856	B-cell CLL/lymphoma 11A	protein-coding
4939	chr6	91521753	91522004	+	0	NA	Intergenic	Intergenic	-224858	NM_003188	6885	Hs.594838	NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
4228	chr4	67918699	67918808	+	0	NA	Intergenic	Intergenic	368965	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
4520	chr5	121653004	121653025	+	0	NA	intron (NM_001308107, intron 1 of 8)	MLT1K|LTR|ERVL-MaLR	5250	NM_001308100	9627	Hs.426463	NM_005460	ENSG00000064692	SNCAIP	SYPH1|Sph1	synuclein alpha interacting protein	protein-coding
1230	chr12	89619025	89619636	+	0	NA	Intergenic	Intergenic	127306	NM_001946	1848	Hs.298654	NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
2793	chr18	67326934	67326999	+	0	NA	intron (NM_152721, intron 3 of 7)	intron (NM_152721, intron 3 of 7)	189799	NR_134579	105372179	Hs.666269	NR_134579	ENSG00000264845	LOC105372179	-	uncharacterized LOC105372179	ncRNA
2993	chr2	41950430	41950572	+	0	NA	Intergenic	Intergenic	-154194	NR_033996	388942	Hs.631883	NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
1917	chr14	89744074	89744317	+	0	NA	intron (NM_001085471, intron 4 of 6)	intron (NM_001085471, intron 4 of 6)	139259	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
6155	chrUn_gl000216	18694	18841	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
6387	chrY	13688113	13688132	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	845267	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5865	chr9	8888243	8888818	+	0	NA	intron (NM_002839, intron 11 of 45)	intron (NM_002839, intron 11 of 45)	30512	NR_121599	101929407	Hs.649971	NR_121599		PTPRD-AS1	-	PTPRD antisense RNA 1	ncRNA
1713	chr14	51676184	51676211	+	0	NA	Intergenic	Intergenic	-30689	NM_030755	81542	Hs.125221	NM_030755	ENSG00000139921	TMX1	PDIA11|TMX|TXNDC|TXNDC1	thioredoxin related transmembrane protein 1	protein-coding
3590	chr21	10085794	10085828	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-117217	NR_038328	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
1060	chr11	127510603	127510736	+	0	NA	Intergenic	Intergenic	369704	NR_120580	101929497	Hs.737442	NR_120580	ENSG00000273409	LOC101929497	-	uncharacterized LOC101929497	ncRNA
6364	chrY	13453571	13453924	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1079642	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3759	chr22	19104265	19104313	+	0	NA	intron (NM_005137, intron 1 of 9)	intron (NM_005137, intron 1 of 9)	5678	NR_033674	9993	Hs.517357	NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
3722	chr21	43882446	43882705	+	0	NA	Intergenic	Intergenic	33889	NM_001286506	89765	Hs.661069	NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head 1 homolog	protein-coding
2420	chr17	22244562	22247014	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	223351	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
2104	chr15	75339133	75339423	+	0	NA	intron (NM_001301105, intron 3 of 4)	intron (NM_001301105, intron 3 of 4)	3668	NM_001301105	60490	Hs.458922	NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
6171	chrUn_gl000216	43085	43219	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
2894	chr2	4067662	4067839	+	0	NA	Intergenic	Intergenic	45999	NR_136322	105373394	Hs.742693	NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
2126	chr15	92416122	92416391	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	18726	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
4450	chr5	46391546	46391605	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-695355	NM_021072	348980	Hs.353176	NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
2858	chr19	47448524	47448696	+	0	NA	intron (NM_004491, intron 2 of 5)	intron (NM_004491, intron 2 of 5)	26677	NM_004491	2909	Hs.509447	NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
900	chr11	51588701	51589340	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	73738	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
4221	chr4	56624451	56624453	+	0	NA	Intergenic	Intergenic	-61785	NR_003935	644145	Hs.570825	NR_003935		LOC644145	-	exocyst complex component 1 pseudogene	pseudo
318	chr1	149035573	149035631	+	0	NA	intron (NR_104217, intron 2 of 17).2	HSATII|Satellite|Satellite	74123	NR_104217	101929780	Hs.534675	NR_104217	ENSG00000272150	NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family member 25, pseudogene	pseudo
2526	chr17	72008188	72008312	+	0	NA	Intergenic	Intergenic	-183574	NR_027146	283982	Hs.464079	NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
972	chr11	92711281	92711813	+	0	NA	intron (NM_005959, intron 1 of 1)	intron (NM_005959, intron 1 of 1)	8758	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
473	chr1	223830251	223830254	+	0	NA	intron (NM_001143962, intron 2 of 16)	intron (NM_001143962, intron 2 of 16)	23184	NM_001143962	388743	Hs.291487	NM_001143962	ENSG00000203697	CAPN8	nCL-2	calpain 8	protein-coding
2572	chr18	3726341	3726853	+	0	NA	intron (NM_001308390, intron 4 of 10)	intron (NM_001308390, intron 4 of 10)	118761	NM_001242766	9229	Hs.594640	NM_004746	ENSG00000170579	DLGAP1	DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1	DLG associated protein 1	protein-coding
1774	chr14	65696996	65697134	+	0	NA	Intergenic	Intergenic	-8000	NR_103769	100128233	Hs.497323	NR_103769	ENSG00000255002	LOC100128233	-	uncharacterized LOC100128233	ncRNA
3	chr1	724206	724219	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-10144	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
5643	chr8	62619845	62620078	+	0	NA	intron (NM_032466, intron 1 of 13)	L1ME3C|LINE|L1	7238	NM_001164755	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
248	chr1	112435345	112435467	+	0	NA	intron (NM_004980, intron 2 of 7)	intron (NM_004980, intron 2 of 7)	-16873	NR_046619	100873995	Hs.535274	NR_046619	ENSG00000237556	KCND3-AS1	-	KCND3 antisense RNA 1	ncRNA
5608	chr8	43095705	43095798	+	0	NA	Intergenic	SAR|Satellite|Satellite	-51834	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
3888	chr3	104318163	104318405	+	0	NA	Intergenic	Intergenic	-372179	NR_030330	693127		NR_030330	ENSG00000208032	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA
6469	chrY	13868586	13868666	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	664763	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
802	chr11	18009917	18010000	+	0	NA	intron (NM_012139, intron 8 of 10)	intron (NM_012139, intron 8 of 10)	24751	NM_012139	26297	Hs.32470	NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
4782	chr6	37276212	37276421	+	0	NA	intron (NM_017772, intron 8 of 12)	intron (NM_017772, intron 8 of 12)	-45432	NR_046399	9025	Hs.485278	NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding
6428	chrY	13838616	13838616	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	694773	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3924	chr3	117347934	117348021	+	0	NA	Intergenic	Intergenic	707699	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA
3420	chr2	230282935	230283072	+	0	NA	intron (NM_139072, intron 8 of 12)	intron (NM_139072, intron 8 of 12)	-146946	NM_001100818	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
2063	chr15	64889367	64889549	+	0	NA	intron (NM_015042, intron 1 of 8)	intron (NM_015042, intron 1 of 8)	97839	NM_015042	23060	Hs.595451	NM_015042	ENSG00000180357	ZNF609	-	zinc finger protein 609	protein-coding
3723	chr21	43882706	43882929	+	0	NA	Intergenic	LTR33|LTR|ERVL	33647	NM_001286506	89765	Hs.661069	NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head 1 homolog	protein-coding
5130	chr7	8637668	8637951	+	0	NA	intron (NM_152745, intron 2 of 2)	intron (NM_152745, intron 2 of 2)	164224	NM_152745	30010	Hs.487564	NM_152745	ENSG00000122584	NXPH1	NPH1|Nbla00697	neurexophilin 1	protein-coding
3269	chr2	150741814	150742015	+	0	NA	Intergenic	Intergenic	-297584	NM_015702	27249	Hs.5324	NM_015702	ENSG00000168288	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria and homocystinuria, cblD type	protein-coding
2632	chr18	31697590	31697636	+	0	NA	intron (NM_001198546, intron 2 of 9)	intron (NM_001198546, intron 2 of 9)	-69037	NM_001198549	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
1049	chr11	126762765	126763016	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	-47752	NR_046986	100874251	Hs.319053	NR_046986	ENSG00000254960	KIRREL3-AS2	-	KIRREL3 antisense RNA 2	ncRNA
5684	chr8	82282034	82282583	+	0	NA	Intergenic	Intergenic	77411	NM_002677	5375	Hs.571512	NM_002677	ENSG00000147588	PMP2	FABP8|M-FABP|MP2|P2	peripheral myelin protein 2	protein-coding
4544	chr5	127270502	127270731	+	0	NA	intron (NM_001317938, intron 6 of 6)	intron (NM_001317938, intron 6 of 6)	148150	NR_015360	644873	Hs.340623	NR_015360	ENSG00000245937	LINC01184	-	long intergenic non-protein coding RNA 1184	ncRNA
6261	chrX	17811524	17811751	+	0	NA	Intergenic	Intergenic	56068	NM_001037536	6322	Hs.109655	NM_006746	ENSG00000047634	SCML1	-	sex comb on midleg-like 1 (Drosophila)	protein-coding
6243	chrUn_gl000228	118879	119034	+	0	NA	intron (NR_137167, intron 2 of 5)	BSR/Beta|Satellite|Satellite	6351	NM_001306068	100288687	Hs.728749	NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
4869	chr6	70886770	70887123	+	0	NA	intron (NM_001858, intron 42 of 50)	intron (NM_001858, intron 42 of 50)	105965	NM_078485	1297	Hs.590892	NM_001851	ENSG00000112280	COL9A1	DJ149L1.1.2|EDM6|MED|STL4	collagen type IX alpha 1 chain	protein-coding
2812	chr19	7157603	7158071	+	0	NA	intron (NM_001079817, intron 9 of 20)	intron (NM_001079817, intron 9 of 20)	88366	NM_001044388	79230	Hs.591380	NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
1488	chr13	51041265	51041450	+	0	NA	intron (NR_109974, intron 4 of 6)	intron (NR_109974, intron 4 of 6)	60228	NR_125753	103689915	Hs.722230	NR_125753	ENSG00000229323	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
6361	chrY	13452743	13453034	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1080501	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
560	chr10	38816979	38817223	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	100027	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
2830	chr19	16722359	16722558	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	16557	NM_004831	9441	Hs.715040	NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
798	chr11	16919310	16919690	+	0	NA	intron (NM_001329631, intron 3 of 22)	intron (NM_001329631, intron 3 of 22)	116463	NM_001329630	144100	Hs.12332	NM_175058	ENSG00000166689	PLEKHA7	-	pleckstrin homology domain containing A7	protein-coding
898	chr11	51588134	51588212	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	72891	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
6147	chrUn_gl000216	14847	14899	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
3892	chr3	105246807	105246816	+	0	NA	intron (NM_001243280, intron 3 of 14)	intron (NM_001243280, intron 3 of 14)	161254	NM_001243280	214	Hs.591293	NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
2725	chr18	47685626	47685802	+	0	NA	intron (NM_001080467, intron 1 of 39)	intron (NM_001080467, intron 1 of 39)	-32781	NR_036204	100422865		NR_036204	ENSG00000283343	MIR4320	-	microRNA 4320	ncRNA
3670	chr21	35174172	35174336	+	0	NA	intron (NM_001331012, intron 19 of 28)	intron (NM_001331012, intron 19 of 28)	113904	NM_001697	539	Hs.409140	NM_001697	ENSG00000241837	ATP5O	ATPO|HMC08D05|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding
4932	chr6	90896334	90896400	+	0	NA	intron (NM_021813, intron 4 of 8)	Helitron2Na_Mam|RC|Helitron?	110260	NM_021813	60468	Hs.269764	NM_021813	ENSG00000112182	BACH2	BTBD25	BTB domain and CNC homolog 2	protein-coding
4316	chr4	138980692	138980701	+	0	NA	intron (NR_037866, intron 7 of 10)	L1PA15|LINE|L1	-29472	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	ncRNA
1273	chr12	99962876	99963062	+	0	NA	intron (NM_152788, intron 9 of 25)	intron (NM_152788, intron 9 of 25)	-78559	NM_153364	196472	Hs.591011	NM_153364	ENSG00000180219	FAM71C	-	family with sequence similarity 71 member C	protein-coding
5911	chr9	66835718	66835960	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-87128	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
2516	chr17	65525124	65525559	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-57640	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
451	chr1	212740389	212740571	+	0	NA	intron (NM_001030287, intron 1 of 3)	T-rich|Low_complexity|Low_complexity	1804	NM_001030287	467	Hs.460	NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
3362	chr2	210337488	210337803	+	0	NA	intron (NM_001039538, intron 1 of 14)	intron (NM_001039538, intron 1 of 14)	48874	NM_001039538	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding
2616	chr18	25625482	25625575	+	0	NA	intron (NM_001792, intron 2 of 15)	L2c|LINE|L2	-8979	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
6227	chrUn_gl000225	129040	130171	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
1408	chr12	129556013	129556175	+	0	NA	TTS (NM_133448)	TTS (NM_133448)	-38141	NR_104173	283352	Hs.665667	NR_104172	ENSG00000249196	LOC283352	-	uncharacterized LOC283352	ncRNA
6116	chrUn_gl000212	43921	44104	+	0	NA	intron (NR_027278, intron 1 of 7)	HSATI|Satellite|Satellite	19963	NR_027278	26080	Hs.448583	NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
2448	chr17	25618032	25618431	+	0	NA	Intergenic	AluYc|SINE|Alu	2791	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	ncRNA
4224	chr4	67138711	67138816	+	0	NA	Intergenic	Intergenic	-3779	NR_031673	100302177		NR_031673	ENSG00000221563	MIR1269A	MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a	microRNA 1269a	ncRNA
2969	chr2	33273329	33273696	+	0	NA	intron (NM_206943, intron 3 of 33)	intron (NM_206943, intron 3 of 33)	-86152	NM_001166264	4052	Hs.619315	NM_000627	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
4249	chr4	77561594	77561906	+	0	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	65046	NR_039655	100616254		NR_039655	ENSG00000283682	MIR548AH	-	microRNA 548ah	ncRNA
4557	chr5	134819930	134820210	+	0	NA	Intergenic	AluY|SINE|Alu	-31981	NM_001099221	497189	Hs.552091	NM_001099221	ENSG00000255833	TIFAB	-	TIFA inhibitor	protein-coding
2721	chr18	47337990	47338265	+	0	NA	intron (NM_006111, intron 1 of 9)	MIR3|SINE|MIR	2124	NM_006111	10449	Hs.200136	NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
3595	chr21	10086938	10087122	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-118436	NR_038328	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
578	chr10	39076651	39076663	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	86930	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
4788	chr6	38078195	38078562	+	0	NA	intron (NM_021943, intron 4 of 5)	intron (NM_021943, intron 4 of 5)	291071	NM_021943	60685	Hs.36959	NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
4909	chr6	84604387	84604606	+	0	NA	intron (NM_016230, intron 3 of 15)	Tigger2a|DNA|TcMar-Tigger	35126	NM_016230	51167	Hs.5741	NM_016230	ENSG00000065615	CYB5R4	NCB5OR|cb5/cb5R|dJ676J13.1	cytochrome b5 reductase 4	protein-coding
4418	chr5	7801810	7802074	+	0	NA	intron (NM_020546, intron 20 of 24)	intron (NM_020546, intron 20 of 24)	49661	NM_001089584	134121	Hs.709979	NM_001089584	ENSG00000215217	C5orf49	-	chromosome 5 open reading frame 49	protein-coding
4384	chr5	1545803	1545848	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-21733	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
695	chr10	78193669	78193737	+	0	NA	intron (NR_131178, intron 7 of 7)	intron (NR_131178, intron 7 of 7)	-454099	NR_120655	101929328	Hs.664552	NR_120655	ENSG00000236467	KCNMA1-AS1	-	KCNMA1 antisense RNA 1	ncRNA
3331	chr2	184530054	184530073	+	0	NA	Intergenic	Intergenic	540980	NM_001287585	129401	Hs.180591	NM_138285	ENSG00000163002	NUP35	MP-44|MP44|NP44|NUP53	nucleoporin 35	protein-coding
5372	chr7	107351802	107352298	+	0	NA	intron (NM_000441, intron 19 of 20)	intron (NM_000441, intron 19 of 20)	32027	NR_144536	101927974	Hs.432792	NR_144536		LOC101927974	-	uncharacterized LOC101927974	ncRNA
5335	chr7	83920965	83921313	+	0	NA	Intergenic	Intergenic	-96922	NM_006080	10371	Hs.252451	NM_006080	ENSG00000075213	SEMA3A	COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1	semaphorin 3A	protein-coding
5167	chr7	28612225	28612515	+	0	NA	intron (NM_182899, intron 4 of 9)	intron (NM_182899, intron 4 of 9)	-113228	NM_001011666	9586	Hs.437075	NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5	cAMP responsive element binding protein 5	protein-coding
5148	chr7	25817491	25817598	+	0	NA	Intergenic	Intergenic	172062	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
540	chr10	38776564	38776634	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	59525	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
1615	chr13	112332204	112332251	+	0	NA	Intergenic	Intergenic	83871	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA
3137	chr2	90371538	90371726	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1259748	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
3065	chr2	68073840	68074050	+	0	NA	Intergenic	Intergenic	-21251	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
2073	chr15	69833304	69833618	+	0	NA	Intergenic	Intergenic	-20598	NR_026979	145837	Hs.410126	NR_026979		DRAIC	-	downregulated RNA in cancer, inhibitor of cell invasion and migration	ncRNA
1732	chr14	54810769	54810940	+	0	NA	Intergenic	Intergenic	-52732	NM_001330173	1033	Hs.84113	NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
861	chr11	51569024	51569047	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	53753	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
3706	chr21	40328584	40328667	+	0	NA	Intergenic	Intergenic	-18272	NR_120405	400867	Hs.689509	NR_120405		LOC400867	-	uncharacterized LOC400867	ncRNA
337	chr1	164741762	164742357	+	0	NA	intron (NR_038072, intron 1 of 3)	intron (NR_038072, intron 1 of 3)	1819	NR_038072	100505795	Hs.661039	NR_038072	ENSG00000233693	LOC100505795	-	uncharacterized LOC100505795	ncRNA
2406	chr17	2388621	2388878	+	0	NA	intron (NM_024086, intron 2 of 9)	MER1A|DNA|hAT-Charlie	26451	NM_024086	79066	Hs.632237	NM_024086	ENSG00000127804	METTL16	METT10D	methyltransferase like 16	protein-coding
3172	chr2	92289670	92289869	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	160610	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
76	chr1	35056180	35056620	+	0	NA	Intergenic	Intergenic	78895	NR_030278	693137		NR_030278	ENSG00000207941	MIR552	MIRN552|hsa-mir-552	microRNA 552	ncRNA
2718	chr18	47047930	47048095	+	0	NA	Intergenic	Intergenic	-29077	NM_001199345	6139	Hs.293653	NM_000985	ENSG00000215472	RPL17	L17|PD-1|RPL23	ribosomal protein L17	protein-coding
982	chr11	110822646	110822832	+	0	NA	Intergenic	Intergenic	-238827	NM_001258418	57569	Hs.6136	NM_020809	ENSG00000137727	ARHGAP20	RARHOGAP	Rho GTPase activating protein 20	protein-coding
6331	chrX	131428142	131428484	+	0	NA	intron (NR_110410, intron 2 of 2)	intron (NR_110410, intron 2 of 2)	-74805	NM_001271187	57826	Hs.119889	NM_021183	ENSG00000123728	RAP2C	-	RAP2C, member of RAS oncogene family	protein-coding
571	chr10	38872198	38872206	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-117525	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
1190	chr12	46603596	46604050	+	0	NA	intron (NM_001077484, intron 5 of 16)	intron (NM_001077484, intron 5 of 16)	56455	NM_001278389	81539	Hs.533770	NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
5428	chr7	126210252	126210702	+	0	NA	intron (NM_001127323, intron 8 of 10)	intron (NM_001127323, intron 8 of 10)	487761	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
2592	chr18	18520386	18520417	+	0	NA	Intergenic	Intergenic	171411	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
6091	chr9_gl000199_random	34226	34258	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
6071	chr9	131331143	131331318	+	0	NA	intron (NM_003127, intron 3 of 55)	intron (NM_003127, intron 3 of 55)	16393	NM_001195532	6709	Hs.372331	NM_003127	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
1171	chr12	34853493	34853833	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	678447	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
1345	chr12	114678209	114678294	+	0	NA	Intergenic	Intergenic	165717	NM_181486	6910	Hs.381715	NM_000192	ENSG00000089225	TBX5	HOS	T-box 5	protein-coding
5715	chr8	94372829	94372944	+	0	NA	intron (NR_033858, intron 10 of 10)	intron (NR_033858, intron 10 of 10)	-193807	NM_001242668	389676	Hs.386711	NM_001242668		C8orf87	-	chromosome 8 open reading frame 87	protein-coding
2290	chr16	48999533	48999647	+	0	NA	Intergenic	Intergenic	316152	NM_004352	869	Hs.458423	NM_004352	ENSG00000102924	CBLN1	-	cerebellin 1 precursor	protein-coding
4431	chr5	26553020	26553264	+	0	NA	Intergenic	Intergenic	485547	NM_016279	1007	Hs.272212	NM_016279	ENSG00000113100	CDH9	-	cadherin 9	protein-coding
4153	chr4	49132302	49132611	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	143797	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
1123	chr12	16266398	16266440	+	0	NA	Intergenic	Intergenic	164200	NM_001170798	729025	Hs.692712	NM_001170798	ENSG00000188991	SLC15A5	-	solute carrier family 15 member 5	protein-coding
236	chr1	109152766	109153070	+	0	NA	intron (NM_001010883, intron 3 of 10)	L2a|LINE|L2	49947	NM_001010883	284611	Hs.200230	NM_001010883	ENSG00000162636	FAM102B	SYM-3B	family with sequence similarity 102 member B	protein-coding
758	chr11	12340562	12340983	+	0	NA	intron (NM_032867, intron 3 of 8)	intron (NM_032867, intron 3 of 8)	32325	NM_032867	84953	Hs.128196	NM_032867	ENSG00000133808	MICALCL	Ebitein1	MICAL C-terminal like	protein-coding
6351	chrY	10043816	10043911	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	295456	NR_001540	252955	Hs.522846	NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis-specific transcript, Y-linked 23 (non-protein coding)	ncRNA
5902	chr9	66833644	66834120	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-89085	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
706	chr10	92970212	92970585	+	0	NA	intron (NM_001257101, intron 1 of 9)	intron (NM_001257101, intron 1 of 9)	-9510	NM_001256549	84333	Hs.500512	NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
14	chr1	725552	725638	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-11527	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
4550	chr5	132626260	132626267	+	0	NA	intron (NM_015082, intron 6 of 15)	intron (NM_015082, intron 6 of 15)	137135	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
4761	chr6	24859906	24860323	+	0	NA	intron (NM_001346031, intron 8 of 21)	intron (NM_001346031, intron 8 of 21)	17479	NM_015864	9750	Hs.559459	NM_014722	ENSG00000111913	FAM65B	C6orf32|DFNB104|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65 member B	protein-coding
2587	chr18	18512651	18513812	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	178581	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
1608	chr13	111152121	111152638	+	0	NA	intron (NM_001846, intron 40 of 47)	intron (NM_001846, intron 40 of 47)	8147	NR_046583	100874203	Hs.508716	NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	ncRNA
2328	chr16	53957589	53957612	+	0	NA	intron (NM_001080432, intron 7 of 8)	T-rich|Low_complexity|Low_complexity	-115705	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1	ncRNA
5630	chr8	60556084	60556360	+	0	NA	Intergenic	Intergenic	-524455	NM_014729	9760	Hs.491805	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
3232	chr2	125300601	125300871	+	0	NA	intron (NM_130773, intron 10 of 23)	intron (NM_130773, intron 10 of 23)	517872	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein like 5	protein-coding
2474	chr17	45269945	45270168	+	0	NA	Intergenic	X3_LINE|LINE|RTE-BovB	-3378	NM_001256	996	Hs.463295	NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
2889	chr2	1976189	1976459	+	0	NA	intron (NM_001329845, intron 8 of 24)	intron (NM_001329845, intron 8 of 24)	-228005	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
3786	chr22	30592009	30592256	+	0	NA	Intergenic	Intergenic	50708	NM_001257135	3976	Hs.2250	NM_002309	ENSG00000128342	LIF	CDF|DIA|HILDA|MLPLI	leukemia inhibitory factor	protein-coding
234	chr1	109152385	109152742	+	0	NA	intron (NM_001010883, intron 3 of 10)	L1PA10|LINE|L1	49592	NM_001010883	284611	Hs.200230	NM_001010883	ENSG00000162636	FAM102B	SYM-3B	family with sequence similarity 102 member B	protein-coding
594	chr10	39093955	39093960	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	104230	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
2924	chr2	5265030	5265093	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-561249	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
1438	chr13	27436048	27436282	+	0	NA	Intergenic	Intergenic	-101243	NM_005288	2835	Hs.123034	NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
1903	chr14	88818739	88818966	+	0	NA	Intergenic	Intergenic	-25596	NM_021161	54207	Hs.560255	NM_021161	ENSG00000100433	KCNK10	K2p10.1|PPP1R97|TREK-2|TREK2	potassium two pore domain channel subfamily K member 10	protein-coding
4766	chr6	28092242	28092338	+	0	NA	promoter-TSS (NM_001320558)	promoter-TSS (NM_001320558)	-44	NM_001320558	80345	Hs.656641	NM_025231	ENSG00000196812	ZSCAN16	ZNF392|ZNF435|dJ265C24.3	zinc finger and SCAN domain containing 16	protein-coding
4580	chr5	149189864	149190177	+	0	NA	intron (NM_001172699, intron 1 of 10)	intron (NM_001172699, intron 1 of 10)	38517	NM_001172699	133522	Hs.483816	NM_133263	ENSG00000155846	PPARGC1B	ERRL1|PERC|PGC-1(beta)|PGC1B	PPARG coactivator 1 beta	protein-coding
5213	chr7	57553882	57554257	+	0	NA	Intergenic	HSATII|Satellite|Satellite	44186	NM_001159279	441234	Hs.533121	NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
4302	chr4	120854386	120854781	+	0	NA	Intergenic	Intergenic	-6112	NR_121639	100996694	Hs.119926	NR_121639	ENSG00000250392	LOC100996694	-	uncharacterized LOC100996694	ncRNA
3554	chr20	30160400	30161605	+	0	NA	promoter-TSS (NR_046853)	promoter-TSS (NR_046853)	64	NR_046853	100874042	Hs.373741	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
6158	chrUn_gl000216	21197	22076	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
6276	chrX	58560627	58560700	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-623596	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger, X-linked, duplicated A	protein-coding
6107	chrUn_gl000212	40449	40497	+	0	NA	intron (NR_027278, intron 1 of 7)	HSATI|Satellite|Satellite	16424	NR_027278	26080	Hs.448583	NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
3116	chr2	89867013	89867903	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	755574	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
2776	chr18	60932529	60932594	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	54052	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding
6410	chrY	13810950	13810967	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	722431	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4443	chr5	38540784	38540975	+	0	NA	intron (NM_002310, intron 1 of 19)	MER102b|DNA|hAT-Charlie	15869	NM_001127671	3977	Hs.133421	NM_002310	ENSG00000113594	LIFR	CD118|LIF-R|SJS2|STWS|SWS	leukemia inhibitory factor receptor alpha	protein-coding
4759	chr6	24859674	24859775	+	0	NA	intron (NM_001346031, intron 8 of 21)	intron (NM_001346031, intron 8 of 21)	17869	NM_015864	9750	Hs.559459	NM_014722	ENSG00000111913	FAM65B	C6orf32|DFNB104|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65 member B	protein-coding
1000	chr11	112885786	112886024	+	0	NA	intron (NM_001076682, intron 2 of 19)	MLT1M|LTR|ERVL-MaLR	-51723	NR_120563	101928847	Hs.711235	NR_120563	ENSG00000247416	LOC101928847	-	uncharacterized LOC101928847	ncRNA
43	chr1	16693321	16693332	+	0	NA	promoter-TSS (NM_001114600)	promoter-TSS (NM_001114600)	-199	NR_073501	26099	Hs.252967	NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
6012	chr9	98030952	98031111	+	0	NA	intron (NM_000136, intron 1 of 14)	intron (NM_000136, intron 1 of 14)	48505	NM_001243743	2176	Hs.494529	NM_000136	ENSG00000158169	FANCC	FA3|FAC|FACC	Fanconi anemia complementation group C	protein-coding
2582	chr18	13395158	13395462	+	0	NA	intron (NM_181481, intron 2 of 5)	intron (NM_181481, intron 2 of 5)	32223	NR_040031	100288122	Hs.646264	NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
3502	chr20	20193534	20193913	+	0	NA	intron (NM_015585, intron 17 of 26)	intron (NM_015585, intron 17 of 26)	-155042	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
1728	chr14	54810332	54810347	+	0	NA	Intergenic	Intergenic	-53247	NM_001330173	1033	Hs.84113	NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
3955	chr3	129838593	129838817	+	0	NA	Intergenic	Intergenic	-8429	NR_024252	729375	Hs.123633	NR_024252		FAM86HP	-	family with sequence similarity 86, member A pseudogene	pseudo
5367	chr7	106209314	106209541	+	0	NA	Intergenic	Intergenic	92207	NM_175884	168455	Hs.29692	NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71-like	protein-coding
3763	chr22	20689351	20689788	+	0	NA	intron (NR_136572, intron 3 of 5)	AluSc8|SINE|Alu	-32741	NR_136569	729461	Hs.629498	NM_201401	ENSG00000274044	LINC01660	-	long intergenic non-protein coding RNA 1660	ncRNA
193	chr1	83568226	83568312	+	0	NA	Intergenic	Intergenic	-116378	NR_110633	101927498		NR_110632	ENSG00000236268	LINC01361	-	long intergenic non-protein coding RNA 1361	ncRNA
288	chr1	142535649	142536091	+	0	NA	Intergenic	Intergenic	177735	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	ankyrin repeat domain 20 family member A12, pseudogene	pseudo
119	chr1	48919923	48919977	+	0	NA	intron (NM_019073, intron 1 of 12)	intron (NM_019073, intron 1 of 12)	17930	NM_001286238	54558	Hs.538103	NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
4875	chr6	71548861	71549006	+	0	NA	intron (NM_001281440, intron 7 of 10)	MLT1I-int|LTR|ERVL-MaLR	117855	NM_080742	135152	Hs.713609	NM_080742	ENSG00000112309	B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding
3925	chr3	117348022	117348638	+	0	NA	Intergenic	Intergenic	708052	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA
5227	chr7	61079933	61079946	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1684495	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
4981	chr6	107149973	107150529	+	0	NA	Intergenic	Intergenic	-71885	NM_001318746	84816	Hs.155839	NM_032730	ENSG00000130347	RTN4IP1	NIMP|OPA10	reticulon 4 interacting protein 1	protein-coding
5954	chr9	78790116	78790205	+	0	NA	intron (NM_006200, intron 14 of 20)	(GAATG)n|Simple_repeat|Simple_repeat	219284	NM_018339	55312	Hs.37558	NM_018339	ENSG00000135002	RFK	RIFK	riboflavin kinase	protein-coding
3374	chr2	211546516	211546581	+	0	NA	Intergenic	Intergenic	64253	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
1180	chr12	41682438	41682469	+	0	NA	intron (NM_001164595, intron 3 of 9)	intron (NM_001164595, intron 3 of 9)	100203	NM_001164595	29951	Hs.380044	NM_013377	ENSG00000165966	PDZRN4	LNX4|SAMCAP3L	PDZ domain containing ring finger 4	protein-coding
4730	chr6	23177293	23177389	+	0	NA	Intergenic	Intergenic	-459188	NR_134613	105374972	Hs.484889	NR_134613		LOC105374972	-	uncharacterized LOC105374972	ncRNA
430	chr1	208274315	208274985	+	0	NA	intron (NM_025179, intron 5 of 31)	intron (NM_025179, intron 5 of 31)	143015	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
3602	chr21	10703269	10703665	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	287476	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
447	chr1	209630609	209630782	+	0	NA	Intergenic	Intergenic	25217	NR_029622	406988		NR_029622	ENSG00000230937	MIR205	MIRN205|mir-205	microRNA 205	ncRNA
3258	chr2	147955221	147955470	+	0	NA	Intergenic	Intergenic	610720	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein cytoplasmic 1 pseudogene 2	pseudo
1446	chr13	32563293	32563407	+	0	NA	Intergenic	L1MA4|LINE|L1	-42087	NM_023037	10129	Hs.507669	NM_023037	ENSG00000073910	FRY	13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1	FRY microtubule binding protein	protein-coding
4438	chr5	34901136	34901354	+	0	NA	TTS (NM_001317949)	TTS (NM_001317949)	14486	NR_026591	5810	Hs.38114	NM_002853	ENSG00000113456	RAD1	HRAD1|REC1	RAD1 checkpoint DNA exonuclease	protein-coding
2118	chr15	92009315	92009402	+	0	NA	intron (NR_110106, intron 1 of 3)	L2b|LINE|L2	2789	NR_110106	101926928	Hs.638788	NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
415	chr1	205889283	205889699	+	0	NA	intron (NM_134325, intron 17 of 21)	intron (NM_134325, intron 17 of 21)	23097	NM_134325	115019	Hs.164073	NM_052934	ENSG00000174502	SLC26A9	-	solute carrier family 26 member 9	protein-coding
4196	chr4	49638534	49638671	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	649943	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3987	chr3	158998185	158998479	+	0	NA	intron (NM_001197108, intron 1 of 6)	intron (NM_001197108, intron 1 of 6)	-2103	NR_037483	100500803		NR_037483	ENSG00000263634	MIR3919	-	microRNA 3919	ncRNA
2597	chr18	18748036	18748337	+	0	NA	Intergenic	Intergenic	-56374	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
1292	chr12	103766676	103766802	+	0	NA	intron (NM_001099336, intron 3 of 5)	intron (NM_001099336, intron 3 of 5)	123049	NR_103526	374470	Hs.534649	NM_198521	ENSG00000179088	C12orf42	-	chromosome 12 open reading frame 42	protein-coding
5441	chr7	126528293	126528563	+	0	NA	intron (NM_001127323, intron 6 of 10)	intron (NM_001127323, intron 6 of 10)	169810	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
1356	chr12	116561746	116562132	+	0	NA	intron (NM_015335, intron 2 of 30)	HERVIP10FH-int|LTR|ERV1	24520	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
5208	chr7	51345602	51345980	+	0	NA	intron (NM_001287438, intron 1 of 7)	intron (NM_001287438, intron 1 of 7)	38767	NM_015198	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
6303	chrX	61730977	61731184	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	840138	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
438	chr1	209203917	209204561	+	0	NA	Intergenic	Intergenic	-294562	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
1153	chr12	34841390	34841653	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	666305	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
1871	chr14	80072362	80072752	+	0	NA	intron (NM_001105250, intron 2 of 6)	intron (NM_001105250, intron 2 of 6)	326875	NR_073546	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
5209	chr7	51345981	51346230	+	0	NA	intron (NM_001287438, intron 1 of 7)	AluSx|SINE|Alu	38453	NM_015198	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
5399	chr7	114299500	114299757	+	0	NA	non-coding (NR_033766, exon 16 of 20)	non-coding (NR_033766, exon 16 of 20)	6228	NR_037439	100500896		NR_037439	ENSG00000272230	MIR3666	-	microRNA 3666	ncRNA
4569	chr5	141695493	141695664	+	0	NA	intron (NM_001127496, intron 1 of 1)	intron (NM_001127496, intron 1 of 1)	2309	NR_131221	100642175	Hs.684549	NR_131221	ENSG00000281881	SPRY4-IT1	SPRIGHTLY	SPRY4 intronic transcript 1	ncRNA
1022	chr11	115783097	115783250	+	0	NA	Intergenic	Intergenic	-152255	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
5861	chr9	8695256	8695435	+	0	NA	intron (NM_001040712, intron 1 of 29)	intron (NM_001040712, intron 1 of 29)	38601	NM_001171025	5789	Hs.446083	NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type D	protein-coding
4463	chr5	51306078	51306339	+	0	NA	Intergenic	Intergenic	-627042	NR_046243	642366	Hs.544139	NR_046243		LOC642366	-	uncharacterized LOC642366	ncRNA
4395	chr5	2734570	2734799	+	0	NA	Intergenic	Intergenic	17085	NM_001134222	153572	Hs.282089	NM_033267	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
2795	chr18	70207139	70207506	+	0	NA	intron (NM_182511, intron 3 of 4)	intron (NM_182511, intron 3 of 4)	4401	NM_182511	147381	Hs.569851	NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
5515	chr7	149630781	149630916	+	0	NA	Intergenic	Intergenic	-59897	NR_027040	401431	Hs.556998	NM_001008745	ENSG00000204934	ATP6V0E2-AS1	-	ATP6V0E2 antisense RNA 1	ncRNA
953	chr11	74352923	74352995	+	0	NA	non-coding (NR_046409, exon 11 of 11)	non-coding (NR_046409, exon 11 of 11)	49309	NR_046410	10714	Hs.82502	NM_006591	ENSG00000077514	POLD3	P66|P68|PPP1R128	DNA polymerase delta 3, accessory subunit	protein-coding
5991	chr9	92931771	92931836	+	0	NA	Intergenic	Intergenic	-128022	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
6031	chr9	111574134	111574445	+	0	NA	Intergenic	L2a|LINE|L2	43986	NM_006686	10880	Hs.534390	NM_006686	ENSG00000148156	ACTL7B	Tact1	actin like 7B	protein-coding
4830	chr6	53791732	53791855	+	0	NA	Intergenic	Intergenic	-2987	NR_125842	101927189	Hs.453592	NR_125842	ENSG00000236740	LOC101927189	-	uncharacterized LOC101927189	ncRNA
6201	chrUn_gl000216	153892	154230	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
1560	chr13	101296869	101297003	+	0	NA	intron (NM_032813, intron 6 of 18)	intron (NM_032813, intron 6 of 18)	30253	NM_032813	84899	Hs.190983	NM_032813	ENSG00000125247	TMTC4	-	transmembrane and tetratricopeptide repeat containing 4	protein-coding
3912	chr3	112870292	112870611	+	0	NA	intron (NR_110823, intron 3 of 3)	intron (NR_110823, intron 3 of 3)	16127	NR_110823	101929717	Hs.638426	NR_110823	ENSG00000243795	LINC02044	-	long intergenic non-protein coding RNA 2044	ncRNA
6500	chrY	58980353	58980866	+	0	NA	Intergenic	(CATTC)n|Simple_repeat|Simple_repeat	-119794	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
5553	chr8	18459665	18460158	+	0	NA	intron (NM_015310, intron 11 of 15)	intron (NM_015310, intron 11 of 15)	206494	NM_206909	23362	Hs.434255	NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
4820	chr6	52040982	52041618	+	0	NA	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	-9885	NM_002190	3605	Hs.41724	NM_002190	ENSG00000112115	IL17A	CTLA-8|CTLA8|IL-17|IL-17A|IL17	interleukin 17A	protein-coding
784	chr11	15241331	15241660	+	0	NA	intron (NM_001278315, intron 6 of 12)	intron (NM_001278315, intron 6 of 12)	70847	NM_001278313	387755	Hs.591997	NM_001031853	ENSG00000188487	INSC	-	inscuteable homolog (Drosophila)	protein-coding
1762	chr14	61724211	61724492	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	24179	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
260	chr1	117499113	117499316	+	0	NA	intron (NM_020440, intron 4 of 8)	intron (NM_020440, intron 4 of 8)	-45158	NM_004258	9398	Hs.654598	NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
5172	chr7	29371422	29371582	+	0	NA	intron (NM_001293070, intron 2 of 13)	AluSg|SINE|Alu	-122916	NR_120522	102724484	Hs.638665	NR_120522		LOC102724484	-	uncharacterized LOC102724484	ncRNA
6300	chrX	61729668	61730498	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	841135	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
3080	chr2	70359528	70359864	+	0	NA	Intergenic	Intergenic	-7248	NR_024444	100133985	Hs.135528	NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
2061	chr15	61932023	61932040	+	0	NA	Intergenic	Intergenic	-410529	NM_134261	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
1844	chr14	76952668	76952962	+	0	NA	intron (NM_004452, intron 7 of 10)	intron (NM_004452, intron 7 of 10)	115125	NM_004452	2103	Hs.435845	NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen related receptor beta	protein-coding
5765	chr8	109772177	109772723	+	0	NA	intron (NR_136411, intron 1 of 3)	intron (NR_136411, intron 1 of 3)	27394	NM_153015	157753	Hs.99439	NM_153015	ENSG00000164841	TMEM74	NET36	transmembrane protein 74	protein-coding
762	chr11	12341554	12342447	+	0	NA	intron (NM_032867, intron 4 of 8)	intron (NM_032867, intron 4 of 8)	33553	NM_032867	84953	Hs.128196	NM_032867	ENSG00000133808	MICALCL	Ebitein1	MICAL C-terminal like	protein-coding
1144	chr12	32536228	32536335	+	0	NA	Intergenic	Intergenic	-102625	NM_001330374	121512	Hs.117835	NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
1723	chr14	51974627	51975389	+	0	NA	intron (NM_001042481, intron 1 of 14)	intron (NM_001042481, intron 1 of 14)	19169	NM_001042481	122786	Hs.434914	NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
2047	chr15	60651053	60651097	+	0	NA	intron (NM_001002857, intron 6 of 13)	intron (NM_001002857, intron 6 of 13)	39110	NM_004039	302	Hs.511605	NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
144	chr1	58144035	58144076	+	0	NA	intron (NM_021080, intron 2 of 16)	intron (NM_021080, intron 2 of 16)	-182160	NR_104363	101926890	Hs.662207	NR_104362	ENSG00000226759	DAB1-AS1	-	DAB1 antisense RNA 1	ncRNA
4619	chr5	174891175	174891271	+	0	NA	Intergenic	Intergenic	-14278	NM_001322977	94081	Hs.369440	NM_022754	ENSG00000164466	SFXN1	TCC	sideroflexin 1	protein-coding
5281	chr7	64955009	64955049	+	0	NA	Intergenic	(CATTC)n|Simple_repeat|Simple_repeat	116317	NM_007139	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
6118	chrUn_gl000216	780	843	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5708	chr8	93974513	93974855	+	0	NA	intron (NM_001171797, intron 1 of 4)	intron (NM_001171797, intron 1 of 4)	3133	NM_001191036	286144	Hs.440643	NM_001171795	ENSG00000205133	TRIQK	C8orf83|PRO0845|UPF0599	triple QxxK/R motif containing	protein-coding
5787	chr8	123982172	123982456	+	0	NA	intron (NM_014943, intron 3 of 3)	L3|LINE|CR1	72349	NM_001330601	79139	Hs.241576	NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
3696	chr21	38381553	38381740	+	0	NA	intron (NM_001317777, intron 2 of 2)	intron (NM_001317777, intron 2 of 2)	2783	NM_018962	53820	Hs.254560	NM_018962	ENSG00000183145	RIPPLY3	DSCR6	ripply transcriptional repressor 3	protein-coding
906	chr11	51591439	51591543	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	76209	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
2205	chr16	28166588	28166693	+	0	NA	intron (NM_001270940, intron 8 of 24)	intron (NM_001270940, intron 8 of 24)	56599	NM_001270940	23214	Hs.460468	NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
1349	chr12	116322566	116322840	+	0	NA	Intergenic	Intergenic	263756	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
177	chr1	75430122	75430129	+	0	NA	Intergenic	Intergenic	-163994	NM_001001933	431707	Hs.403934	NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
6349	chrY	10043587	10043694	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	295233	NR_001540	252955	Hs.522846	NR_001540	ENSG00000239225	TTTY23	NCRNA00148|TTTY23B	testis-specific transcript, Y-linked 23 (non-protein coding)	ncRNA
2213	chr16	33865395	33865705	+	0	NA	Intergenic	(GAATG)n|Simple_repeat|Simple_repeat	96953	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
3346	chr2	205130221	205130596	+	0	NA	Intergenic	Intergenic	-280108	NM_152526	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
2940	chr2	9419001	9419289	+	0	NA	intron (NM_001135191, intron 1 of 26)	intron (NM_001135191, intron 1 of 26)	72251	NM_003887	8853	Hs.555902	NM_003887	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
22	chr1	7278317	7278484	+	0	NA	intron (NM_015215, intron 4 of 22)	L1MC4|LINE|L1	433016	NR_038934	23261	Hs.397705	NM_015215	ENSG00000171735	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
205	chr1	87221459	87221544	+	0	NA	Intergenic	Intergenic	51248	NM_001206653	51100	Hs.136309	NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like endophilin B1	protein-coding
3072	chr2	68925587	68925790	+	0	NA	Intergenic	MER82|DNA|TcMar-Tigger	-36225	NM_001007231	9938	Hs.531807	NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
4345	chr4	151288243	151288268	+	0	NA	intron (NM_006726, intron 48 of 57)	intron (NM_006726, intron 48 of 57)	-214822	NM_006439	10586	Hs.584852	NM_006439	ENSG00000181541	MAB21L2	MCOPS14	mab-21 like 2	protein-coding
3213	chr2	109815783	109815813	+	0	NA	intron (NM_001099289, intron 1 of 9)	(GAATG)n|Satellite|Satellite	-57754	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
3296	chr2	162029537	162029851	+	0	NA	intron (NM_001199135, intron 1 of 7)	MER91C|DNA|hAT-Tip100	12755	NM_001199135	10010	Hs.132257	NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
5730	chr8	99878310	99878464	+	0	NA	intron (NM_001256312, intron 3 of 12)	intron (NM_001256312, intron 3 of 12)	-40478	NM_006281	6788	Hs.492333	NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
2681	chr18	40255831	40256182	+	0	NA	intron (NR_046174, intron 7 of 9)	intron (NR_046174, intron 7 of 9)	439651	NM_001272077	6014	Hs.464985	NM_002930	ENSG00000152214	RIT2	RIBA|RIN|ROC2	Ras like without CAAX 2	protein-coding
1260	chr12	97563453	97563479	+	0	NA	Intergenic	Intergenic	262222	NM_001135175	121441	Hs.270084	NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
874	chr11	51579188	51579193	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	63908	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
4795	chr6	41256451	41256756	+	0	NA	Intergenic	Intergenic	-2120	NR_136332	54210	Hs.283022	NM_018643	ENSG00000124731	TREM1	CD354|TREM-1	triggering receptor expressed on myeloid cells 1	protein-coding
493	chr1	228928423	228928650	+	0	NA	Intergenic	Intergenic	57712	NM_021205	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
1708	chr14	43188573	43188757	+	0	NA	Intergenic	Intergenic	1112606	NM_152447	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
3719	chr21	41425993	41426359	+	0	NA	intron (NM_001389, intron 29 of 32)	intron (NM_001389, intron 29 of 32)	158182	NR_039917	100616148		NR_039917	ENSG00000263973	MIR4760	-	microRNA 4760	ncRNA
2220	chr16	33866764	33867107	+	0	NA	Intergenic	Intergenic	95568	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
1436	chr13	27435572	27435807	+	0	NA	Intergenic	AluJb|SINE|Alu	-100767	NM_005288	2835	Hs.123034	NM_005288	ENSG00000132975	GPR12	GPCR12|GPCR21|PPP1R84	G protein-coupled receptor 12	protein-coding
2528	chr17	72008570	72008572	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-183895	NR_027146	283982	Hs.464079	NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
1591	chr13	108109948	108110069	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	73588	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
1677	chr14	36844077	36844441	+	0	NA	Intergenic	Intergenic	-54377	NM_001308110	51562	Hs.368647	NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
2174	chr16	12413142	12413338	+	0	NA	intron (NM_032167, intron 15 of 20)	AluJb|SINE|Alu	342649	NM_032167	92017	Hs.458401	NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
4699	chr6	20893236	20893257	+	0	NA	intron (NM_017774, intron 9 of 15)	intron (NM_017774, intron 9 of 15)	358558	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
5506	chr7	146353798	146353952	+	0	NA	intron (NM_014141, intron 1 of 23)	intron (NM_014141, intron 1 of 23)	440826	NR_110829	101928700	Hs.571218	NR_110829	ENSG00000236795	LOC101928700	-	uncharacterized LOC101928700	ncRNA
1320	chr12	106254327	106254841	+	0	NA	Intergenic	Intergenic	154032	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
1026	chr11	115906468	115906700	+	0	NA	Intergenic	Intergenic	-275666	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
4493	chr5	77313084	77313419	+	0	NA	intron (NM_003664, intron 25 of 26)	intron (NM_003664, intron 25 of 26)	59180	NR_105013	101929154	Hs.252895	NR_105012		LOC101929154	-	uncharacterized LOC101929154	ncRNA
2752	chr18	55524158	55524273	+	0	NA	Intergenic	Intergenic	-53888	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
5606	chr8	43095357	43095427	+	0	NA	Intergenic	SAR|Satellite|Satellite	-52193	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
5750	chr8	102962290	102962555	+	0	NA	intron (NM_001040624, intron 3 of 7)	HAL1|LINE|L1	-34238	NR_126152	104054148	Hs.683917	NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
1390	chr12	123616467	123617069	+	0	NA	Intergenic	Intergenic	-21732	NM_001300801	57605	Hs.272759	NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
1993	chr15	37047341	37047533	+	0	NA	intron (NM_001321756, intron 9 of 9)	intron (NM_001321756, intron 9 of 9)	63270	NR_027320	161635	Hs.659822	NR_027320		CSNK1A1P1	CSNK1A1P	casein kinase 1 alpha 1 pseudogene 1	pseudo
3544	chr20	29829260	29829288	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-16193	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
1469	chr13	40342205	40342333	+	0	NA	intron (NM_001145079, intron 18 of 18)	intron (NM_001145079, intron 18 of 18)	-103997	NR_036190	100422940		NR_036190	ENSG00000264171	MIR4305	-	microRNA 4305	ncRNA
1499	chr13	78066932	78066994	+	0	NA	Intergenic	Intergenic	-42846	NM_144777	8796	Hs.534699	NM_003843	ENSG00000136155	SCEL	-	sciellin	protein-coding
4674	chr6	19298114	19298464	+	0	NA	Intergenic	Intergenic	-117578	NR_110860	101928519	Hs.551771	NR_110860		LOC101928519	-	uncharacterized LOC101928519	ncRNA
400	chr1	203289776	203289953	+	0	NA	Intergenic	Intergenic	15200	NM_006763	7832	Hs.519162	NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
919	chr11	62537209	62537307	+	0	NA	Intergenic	Intergenic	-1517	NM_006473	10629	Hs.714400	NM_006473	ENSG00000162227	TAF6L	PAF65A	TATA-box binding protein associated factor 6 like	protein-coding
1268	chr12	98321306	98321582	+	0	NA	Intergenic	Intergenic	11455	NR_039716	100616287		NR_039716	ENSG00000265861	MIR4495	-	microRNA 4495	ncRNA
5963	chr9	82266479	82266639	+	0	NA	intron (NM_007005, intron 6 of 19)	intron (NM_007005, intron 6 of 19)	79871	NR_104239	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4	transducin like enhancer of split 4	protein-coding
633	chr10	42409148	42409450	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	454194	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
1372	chr12	117933105	117933115	+	0	NA	intron (NM_173598, intron 14 of 19)	intron (NM_173598, intron 14 of 19)	-133503	NM_001204218	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
1977	chr14	101213678	101213910	+	0	NA	Intergenic	ERVL-E-int|LTR|ERVL	20592	NM_001317172	8788	Hs.116631	NM_003836	ENSG00000185559	DLK1	DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2	delta like non-canonical Notch ligand 1	protein-coding
2023	chr15	50351243	50351243	+	0	NA	intron (NR_073597, intron 3 of 26)	Helitron3Na_Mam|RC|Helitron	54270	NR_073598	79895	Hs.511311	NM_024837	ENSG00000104043	ATP8B4	ATPIM	ATPase phospholipid transporting 8B4 (putative)	protein-coding
4387	chr5	1603971	1604007	+	0	NA	intron (NR_003713, intron 2 of 3)	intron (NR_003713, intron 2 of 3)	-9343	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	succinate dehydrogenase complex flavoprotein subunit A pseudogene 3	pseudo
3445	chr2	238578041	238578240	+	0	NA	intron (NM_001137550, intron 1 of 23)	intron (NM_001137550, intron 1 of 23)	-22667	NM_004735	9208	Hs.471779	NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
1669	chr14	36785671	36786356	+	0	NA	exon (NM_001308110, exon 2 of 8)	exon (NM_001308110, exon 2 of 8)	3869	NM_016586	51562	Hs.368647	NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
1825	chr14	70597430	70597789	+	0	NA	intron (NM_033262, intron 2 of 7)	L2c|LINE|L2	-50675	NM_001130417	6547	Hs.337696	NM_033262	ENSG00000100678	SLC8A3	NCX3	solute carrier family 8 member A3	protein-coding
1285	chr12	101961961	101962293	+	0	NA	Intergenic	Intergenic	-26582	NM_001254721	4604	Hs.654589	NM_002465	ENSG00000196091	MYBPC1	LCCS4|MYBPCC|MYBPCS	myosin binding protein C, slow type	protein-coding
5468	chr7	133163660	133164037	+	0	NA	intron (NM_001037126, intron 8 of 9)	intron (NM_001037126, intron 8 of 9)	188213	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
6401	chrY	13808801	13808811	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	724583	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3309	chr2	173753808	173753900	+	0	NA	intron (NM_001282899, intron 1 of 27)	intron (NM_001282899, intron 1 of 27)	29088	NM_001282899	11069	Hs.470646	NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
3594	chr21	10086453	10086937	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-118101	NR_038328	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
3757	chr22	18884109	18884175	+	0	NA	Intergenic	HSATI|Satellite|Satellite	-2198	NR_136571	100996432	Hs.631668	NR_136571		LINC01663	-	long intergenic non-protein coding RNA 1663	ncRNA
6336	chrX	131727683	131727722	+	0	NA	Intergenic	Intergenic	-73968	NR_046691	100874102	Hs.619341	NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
1549	chr13	99234323	99234521	+	0	NA	Intergenic	Intergenic	-5017	NM_001032296	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
1959	chr14	97444857	97445244	+	0	NA	Intergenic	Intergenic	35134	NR_104113	145249		NR_104113	ENSG00000225163	LINC00618	C14orf63	long intergenic non-protein coding RNA 618	ncRNA
1242	chr12	93529076	93529526	+	0	NA	intron (NR_040096, intron 3 of 4)	intron (NR_040096, intron 3 of 4)	-38841	NR_120492	102724933	Hs.663947	NR_120492	ENSG00000258171	LOC102724933	-	uncharacterized LOC102724933	ncRNA
1208	chr12	67926424	67926588	+	0	NA	intron (NR_103861, intron 1 of 2)	intron (NR_103861, intron 1 of 2)	12644	NR_103861	100507175	Hs.505986	NR_103861	ENSG00000203585	LOC100507175	-	uncharacterized LOC100507175	ncRNA
1874	chr14	80821482	80821885	+	0	NA	intron (NR_038355, intron 2 of 8)	intron (NR_038355, intron 2 of 8)	-124286	NM_000793	1734	Hs.202354	NM_000793	ENSG00000211448	DIO2	5DII|D2|DIOII|SelY|TXDI2	iodothyronine deiodinase 2	protein-coding
1803	chr14	68846514	68846812	+	0	NA	intron (NM_001321809, intron 8 of 11)	intron (NM_001321809, intron 8 of 11)	248841	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
5533	chr8	5834890	5834986	+	0	NA	Intergenic	Intergenic	429131	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	ncRNA
3542	chr20	29822954	29823072	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-22454	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
1201	chr12	63151127	63151497	+	0	NA	intron (NM_020700, intron 4 of 9)	intron (NM_020700, intron 4 of 9)	153846	NR_029661	406891		NR_029661	ENSG00000199179	MIRLET7I	LET7I|MIRNLET7I|hsa-let-7i|let-7i	microRNA let-7i	ncRNA
519	chr10	501337	501423	+	0	NA	intron (NM_014974, intron 3 of 36)	intron (NM_014974, intron 3 of 36)	-173354	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
5070	chr6	156670081	156670530	+	0	NA	Intergenic	Intergenic	402374	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA
5492	chr7	141117100	141117113	+	0	NA	intron (NM_001195278, intron 2 of 3)	intron (NM_001195278, intron 2 of 3)	-133972	NM_018238	55750	Hs.743318	NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
5069	chr6	156669747	156670080	+	0	NA	Intergenic	Intergenic	401982	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA
3300	chr2	166681974	166682040	+	0	NA	Intergenic	HAL1|LINE|L1	-31204	NM_004482	2591	Hs.170986	NM_004482	ENSG00000115339	GALNT3	GalNAc-T3|HFTC|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
17	chr1	726384	726434	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-12341	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
6383	chrY	13677508	13677613	+	0	NA	Intergenic	Intergenic	855829	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4092	chr4	8147323	8147534	+	0	NA	intron (NM_001130083, intron 1 of 20)	intron (NM_001130083, intron 1 of 20)	13131	NM_001130083	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
2451	chr17	28703663	28704015	+	0	NA	Intergenic	Intergenic	-2103	NM_001304	1362	Hs.446079	NM_001304	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
5870	chr9	10014852	10015042	+	0	NA	intron (NM_002839, intron 4 of 45)	intron (NM_002839, intron 4 of 45)	215555	NR_135135	105375972	Hs.738242	NR_135135	ENSG00000230920	LOC105375972	-	uncharacterized LOC105375972	ncRNA
5466	chr7	133163317	133163532	+	0	NA	intron (NM_001037126, intron 8 of 9)	intron (NM_001037126, intron 8 of 9)	187789	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
3337	chr2	191417863	191417990	+	0	NA	Intergenic	MIRc|SINE|MIR	-18458	NR_136298	100131211	Hs.659824	NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
1274	chr12	99963063	99963075	+	0	NA	intron (NM_152788, intron 9 of 25)	intron (NM_152788, intron 9 of 25)	-78459	NM_153364	196472	Hs.591011	NM_153364	ENSG00000180219	FAM71C	-	family with sequence similarity 71 member C	protein-coding
5119	chr7	5927562	5927804	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	7254	NM_001097622	654231	Hs.571315	NM_001097622	ENSG00000122543	OCM	OCM1|OM|ONCM	oncomodulin	protein-coding
110	chr1	43905427	43905902	+	0	NA	exon (NM_015284, exon 50 of 71)	exon (NM_015284, exon 50 of 71)	-8546	NR_106793	102465440		NR_106793	ENSG00000274975	MIR6735	hsa-mir-6735	microRNA 6735	ncRNA
4861	chr6	61913338	61913594	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-370542	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
2356	chr16	72918826	72918954	+	0	NA	intron (NM_001164766, intron 3 of 8)	intron (NM_001164766, intron 3 of 8)	163384	NM_006885	463	Hs.598297	NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
4721	chr6	21749251	21749409	+	0	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	82655	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
2210	chr16	30143744	30143862	+	0	NA	Intergenic	AluSq|SINE|Alu	-9173	NM_001109891	5595	Hs.861	NM_002746	ENSG00000102882	MAPK3	ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK	mitogen-activated protein kinase 3	protein-coding
3700	chr21	38436216	38436373	+	0	NA	promoter-TSS (NR_131189)	promoter-TSS (NR_131189)	72	NR_131189	105372795	Hs.528019	NR_131189		LOC105372795	-	uncharacterized LOC105372795	ncRNA
2658	chr18	35567660	35567709	+	0	NA	Intergenic	Intergenic	330586	NR_036202	100422857		NR_036202	ENSG00000266530	MIR4318	-	microRNA 4318	ncRNA
6309	chrX	61733958	61734215	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	837132	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
5823	chr8	143144756	143144863	+	0	NA	Intergenic	Intergenic	-65152	NR_130468	100616374		NR_130468	ENSG00000265612	MIR4539	-	microRNA 4539	ncRNA
5871	chr9	10015043	10015749	+	0	NA	intron (NM_002839, intron 4 of 45)	intron (NM_002839, intron 4 of 45)	216004	NR_135135	105375972	Hs.738242	NR_135135	ENSG00000230920	LOC105375972	-	uncharacterized LOC105375972	ncRNA
646	chr10	42799685	42799877	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	63712	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
6298	chrX	61729101	61729413	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	841961	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
5380	chr7	107819137	107819394	+	0	NA	intron (NM_001037132, intron 22 of 29)	intron (NM_001037132, intron 22 of 29)	-48464	NM_001318048	22798	Hs.62022	NM_007356	ENSG00000091128	LAMB4	-	laminin subunit beta 4	protein-coding
5807	chr8	135253453	135253661	+	0	NA	Intergenic	Intergenic	354818	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
5322	chr7	76341135	76341340	+	0	NA	Intergenic	Intergenic	-84617	NM_012230	22932	Hs.488877	NM_012230	ENSG00000146707	POMZP3	POM-ZP3|POM121	POM121 and ZP3 fusion	protein-coding
4005	chr3	170957700	170957922	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-133263	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
1220	chr12	78139856	78140272	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-85005	NM_001024383	89795	Hs.655301	NM_014903	ENSG00000067798	NAV3	POMFIL1|STEERIN3|unc53H3	neuron navigator 3	protein-coding
5266	chr7	61980098	61980345	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	784213	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
3663	chr21	11186890	11186938	+	0	NA	Intergenic	Intergenic	-87977	NM_001187	574	Hs.545789	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
5276	chr7	64954316	64954505	+	0	NA	Intergenic	(CACTC)n|Simple_repeat|Simple_repeat	115698	NM_007139	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
2652	chr18	35084016	35084204	+	0	NA	intron (NM_001025087, intron 1 of 12)	MIR3|SINE|MIR	-37643	NR_132967	106635546		NR_132967		SNORA111	-	small nucleolar RNA, H/ACA box 111	snoRNA
6407	chrY	13810710	13810756	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	722656	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4263	chr4	83955873	83956135	+	0	NA	promoter-TSS (NM_001258006)	promoter-TSS (NM_001258006)	-235	NM_016129	51138	Hs.190384	NM_016129	ENSG00000138663	COPS4	CSN4|SGN4	COP9 signalosome subunit 4	protein-coding
2337	chr16	66369509	66369717	+	0	NA	Intergenic	MIR|SINE|MIR	-30897	NM_001795	1003	Hs.76206	NM_001795	ENSG00000179776	CDH5	7B4|CD144	cadherin 5	protein-coding
4626	chr5	177485340	177485598	+	0	NA	Intergenic	Intergenic	51502	NR_038353	653316	Hs.652193	NM_001079527	ENSG00000204677	FAM153C	NY-REN-7-like	family with sequence similarity 153, member C, pseudogene	pseudo
5014	chr6	111872873	111873050	+	0	NA	intron (NR_034109, intron 1 of 1)	intron (NR_034109, intron 1 of 1)	15602	NM_001164283	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
6151	chrUn_gl000216	18031	18044	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
2243	chr16	33899716	33899720	+	0	NA	Intergenic	AluYh9|SINE|Alu	62785	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
1087	chr12	2432253	2432427	+	0	NA	intron (NM_001129830, intron 3 of 47)	intron (NM_001129830, intron 3 of 47)	53398	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
1288	chr12	103634846	103635111	+	0	NA	intron (NR_103526, intron 10 of 10)	intron (NR_103526, intron 10 of 10)	89358	NR_126333	101929058	Hs.171310	NR_126333	ENSG00000257860	LOC101929058	-	uncharacterized LOC101929058	ncRNA
810	chr11	20509981	20510089	+	0	NA	intron (NM_005788, intron 13 of 15)	intron (NM_005788, intron 13 of 15)	100959	NM_005788	10196	Hs.152337	NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
5425	chr7	126124370	126124525	+	0	NA	intron (NM_001127323, intron 9 of 10)	intron (NM_001127323, intron 9 of 10)	573791	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
5885	chr9	28215696	28216126	+	0	NA	intron (NM_152570, intron 5 of 6)	intron (NM_152570, intron 5 of 6)	503392	NM_152570	158038	Hs.444665	NM_152570	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
5838	chr9	3732932	3733148	+	0	NA	Intergenic	Intergenic	64954	NR_121586	101929302	Hs.122828	NR_121586	ENSG00000232104	RFX3-AS1	CVAT7	RFX3 antisense RNA 1	ncRNA
4351	chr4	154065199	154065361	+	0	NA	Intergenic	Intergenic	-8990	NM_001130067	23321	Hs.435711	NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
4166	chr4	49141280	49142086	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	153024	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
33	chr1	9960401	9960560	+	0	NA	intron (NM_020248, intron 1 of 5)	intron (NM_020248, intron 1 of 5)	9836	NM_020248	56998	Hs.463759	NM_020248	ENSG00000178585	CTNNBIP1	ICAT	catenin beta interacting protein 1	protein-coding
1587	chr13	107881698	107881713	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	301891	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
5654	chr8	70070881	70071132	+	0	NA	Intergenic	Intergenic	-54581	NR_039986	100505718	Hs.122386	NR_039986	ENSG00000253658	LINC01592	-	long intergenic non-protein coding RNA 1592	ncRNA
6462	chrY	13864660	13864848	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	668635	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4256	chr4	82729057	82729187	+	0	NA	Intergenic	Intergenic	-336040	NM_152545	153020	Hs.591696	NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
227	chr1	105534536	105534833	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	626873	NR_125954	101928476	Hs.563856	NR_125954	ENSG00000230768	LINC01676	-	long intergenic non-protein coding RNA 1676	ncRNA
6235	chrUn_gl000225	196882	196930	+	0	NA	NA	(GAATG)n|Satellite|Satellite	NA	NA								
5619	chr8	43793070	43793083	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	645491	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
4829	chr6	53611656	53611784	+	0	NA	Intergenic	MIRb|SINE|MIR	-48058	NM_018214	55227	Hs.606493	NM_018214	ENSG00000137269	LRRC1	LANO|dJ523E19.1	leucine rich repeat containing 1	protein-coding
1860	chr14	78808056	78808185	+	0	NA	intron (NR_073547, intron 4 of 20)	intron (NR_073547, intron 4 of 20)	-61954	NM_004796	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
4577	chr5	146000548	146000718	+	0	NA	intron (NM_181675, intron 7 of 9)	intron (NM_181675, intron 7 of 9)	-104957	NM_194251	134391	Hs.483732	NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|PGR7	G protein-coupled receptor 151	protein-coding
5379	chr7	107818848	107819136	+	0	NA	intron (NM_001037132, intron 22 of 29)	intron (NM_001037132, intron 22 of 29)	-48191	NM_001318048	22798	Hs.62022	NM_007356	ENSG00000091128	LAMB4	-	laminin subunit beta 4	protein-coding
2013	chr15	47624211	47624369	+	0	NA	intron (NM_001198999, intron 1 of 19)	intron (NM_001198999, intron 1 of 19)	147887	NM_001198999	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding
264	chr1	120379757	120380038	+	0	NA	intron (NM_001047980, intron 6 of 7)	intron (NM_001047980, intron 6 of 7)	7606	NM_001047980	343505		NM_001047980		NBPF7	-	neuroblastoma breakpoint family member 7	protein-coding
806	chr11	20092000	20092468	+	0	NA	intron (NM_001111019, intron 12 of 27)	intron (NM_001111019, intron 12 of 27)	-21385	NR_046672	100874014	Hs.557916	NR_046672	ENSG00000254453	NAV2-AS2	-	NAV2 antisense RNA 2	ncRNA
4960	chr6	98962436	98962775	+	0	NA	Intergenic	Intergenic	-319975	NM_005604	5454	Hs.182505	NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
4477	chr5	71420544	71420800	+	0	NA	intron (NM_005909, intron 2 of 6)	intron (NM_005909, intron 2 of 6)	17577	NM_005909	4131	Hs.335079	NM_005909	ENSG00000131711	MAP1B	FUTSCH|MAP5|PPP1R102	microtubule associated protein 1B	protein-coding
6099	chr9_gl000199_random	42910	42944	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
1885	chr14	83290822	83290922	+	0	NA	Intergenic	MIR|SINE|MIR	-1201467	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
4899	chr6	81348668	81348684	+	0	NA	Intergenic	Intergenic	532349	NM_001318975	594	Hs.654441	NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
2905	chr2	4406340	4406583	+	0	NA	Intergenic	Intergenic	297351	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
1817	chr14	70477580	70477876	+	0	NA	intron (NM_001034852, intron 8 of 11)	intron (NM_001034852, intron 8 of 11)	69206	NM_182936	6547	Hs.337696	NM_033262	ENSG00000100678	SLC8A3	NCX3	solute carrier family 8 member A3	protein-coding
5300	chr7	69119992	69120047	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	56114	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
5612	chr8	43096315	43096381	+	0	NA	Intergenic	SAR|Satellite|Satellite	-51237	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
6078	chr9	140222512	140222595	+	0	NA	intron (NM_017820, intron 17 of 21)	intron (NM_017820, intron 17 of 21)	-25850	NM_001004354	441478	Hs.535075	NM_001004354	ENSG00000198435	NRARP	-	NOTCH-regulated ankyrin repeat protein	protein-coding
2707	chr18	45743170	45743422	+	0	NA	intron (NM_001318841, intron 2 of 4)	MLT1C|LTR|ERVL-MaLR	-79616	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
4854	chr6	61912816	61912823	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-371189	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
556	chr10	38804422	38804492	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	87383	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
3998	chr3	170910209	170910265	+	0	NA	intron (NM_001161560, intron 5 of 31)	intron (NM_001161560, intron 5 of 31)	-85689	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
717	chr10	98308382	98308550	+	0	NA	intron (NM_020123, intron 7 of 14)	AluSx1|SINE|Alu	-34783	NM_012465	7093	Hs.154296	NM_012465	ENSG00000095587	TLL2	-	tolloid like 2	protein-coding
2817	chr19	7179751	7179908	+	0	NA	intron (NM_001079817, intron 3 of 20)	MLT1H2|LTR|ERVL-MaLR	110358	NM_001044388	79230	Hs.591380	NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
671	chr10	70631603	70631688	+	0	NA	intron (NM_001130161, intron 1 of 4)	intron (NM_001130161, intron 1 of 4)	-29389	NM_024045	79009	Hs.522984	NM_024045	ENSG00000107625	DDX50	GU2|GUB|RH-II/GuB|mcdrh	DExD-box helicase 50	protein-coding
1511	chr13	93371974	93372147	+	0	NA	intron (NR_046520, intron 1 of 3)	intron (NR_046520, intron 1 of 3)	148	NR_049776	100873969	Hs.577863	NR_046520	ENSG00000235984	GPC5-AS1	-	GPC5 antisense RNA 1	ncRNA
6111	chrUn_gl000212	41291	41318	+	0	NA	intron (NR_027278, intron 1 of 7)	intron (NR_027278, intron 1 of 7)	17255	NR_027278	26080	Hs.448583	NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
6317	chrX	61870825	61870993	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	700309	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
5436	chr7	126418143	126418448	+	0	NA	intron (NM_001127323, intron 6 of 10)	intron (NM_001127323, intron 6 of 10)	279943	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
5857	chr9	8096332	8096493	+	0	NA	Intergenic	Intergenic	-296606	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
5538	chr8	5925676	5925775	+	0	NA	Intergenic	Intergenic	338344	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	ncRNA
2249	chr16	33973594	33973931	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-11259	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
3353	chr2	207095010	207095121	+	0	NA	intron (NR_104359, intron 1 of 5)	intron (NR_104359, intron 1 of 5)	-12294	NM_005279	2825	Hs.184907	NM_005279	ENSG00000183671	GPR1	-	G protein-coupled receptor 1	protein-coding
5678	chr8	81640039	81640175	+	0	NA	intron (NM_001033723, intron 2 of 8)	intron (NM_001033723, intron 2 of 8)	146909	NM_001033723	619279	Hs.434957	NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
2423	chr17	22252462	22255663	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	231625	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
6488	chrY	28793557	28793608	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	918945	NR_002176	474148	Hs.511777	NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis-specific transcript, Y-linked 3B (non-protein coding)	ncRNA
1605	chr13	110700276	110700463	+	0	NA	Intergenic	Intergenic	-5263	NR_126387	104355146	Hs.508690	NR_126387	ENSG00000231428	LINC00396	-	long intergenic non-protein coding RNA 396	ncRNA
663	chr10	64026603	64026700	+	0	NA	intron (NM_001282941, intron 1 of 4)	MIRb|SINE|MIR	1971	NM_145307	219790	Hs.58559	NM_145307	ENSG00000182010	RTKN2	PLEKHK1|bA531F24.1	rhotekin 2	protein-coding
4301	chr4	114947836	114947923	+	0	NA	Intergenic	L2a|LINE|L2	-47001	NM_024590	79642	Hs.22895	NM_024590	ENSG00000180801	ARSJ	-	arylsulfatase family member J	protein-coding
2431	chr17	25264398	25264485	+	0	NA	Intergenic	(GAGTG)n|Simple_repeat|Simple_repeat	151826	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
6373	chrY	13458340	13458536	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1074951	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5050	chr6	141873473	141873652	+	0	NA	Intergenic	Intergenic	536374	NM_002511	4829	Hs.552106	NM_002511	ENSG00000135577	NMBR	BB1|BB1R|NMB-R	neuromedin B receptor	protein-coding
6299	chrX	61729414	61729667	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	841678	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
1945	chr14	96337490	96337631	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-5169	NR_132399	100507043	Hs.455955	NR_038861	ENSG00000250366	TUNAR	HI-LNC78|LINC00617|TUNA	TCL1 upstream neural differentiation-associated RNA	ncRNA
4326	chr4	140842662	140842701	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	232552	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
969	chr11	92628356	92628576	+	0	NA	3' UTR (NM_001008781, exon 25 of 25)	3' UTR (NM_001008781, exon 25 of 25)	20328	NR_135091	105369431	Hs.532389	NR_135091		LOC105369431	-	uncharacterized LOC105369431	ncRNA
5184	chr7	30510356	30510893	+	0	NA	intron (NM_006092, intron 1 of 13)	intron (NM_006092, intron 1 of 13)	7769	NM_006092	10392	Hs.405153	NM_006092	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1	nucleotide binding oligomerization domain containing 1	protein-coding
5802	chr8	134262531	134262788	+	0	NA	intron (NM_001135242, intron 10 of 15)	intron (NM_001135242, intron 10 of 15)	46888	NM_001258433	10397	Hs.372914	NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
4295	chr4	113987802	113987823	+	0	NA	intron (NM_001148, intron 1 of 45)	L2c|LINE|L2	17027	NM_001148	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding
1946	chr14	96337632	96337731	+	0	NA	Intergenic	L3|LINE|CR1	-5048	NR_132399	100507043	Hs.455955	NR_038861	ENSG00000250366	TUNAR	HI-LNC78|LINC00617|TUNA	TCL1 upstream neural differentiation-associated RNA	ncRNA
2276	chr16	46430874	46430902	+	0	NA	Intergenic	HSATII|Satellite|Satellite	172121	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
4207	chr4	49651635	49651636	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	662976	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
4089	chr4	8040829	8041211	+	0	NA	intron (NM_001130083, intron 9 of 20)	intron (NM_001130083, intron 9 of 20)	32723	NM_001286688	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
1501	chr13	78067334	78067612	+	0	NA	Intergenic	Intergenic	-42336	NM_144777	8796	Hs.534699	NM_003843	ENSG00000136155	SCEL	-	sciellin	protein-coding
4808	chr6	47256057	47256189	+	0	NA	intron (NM_014452, intron 1 of 5)	L1ME3A|LINE|L1	21560	NM_014452	27242	Hs.443577	NM_014452	ENSG00000146072	TNFRSF21	BM-018|CD358|DR6	TNF receptor superfamily member 21	protein-coding
549	chr10	38778176	38778210	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	61119	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
3465	chr20	9117834	9117843	+	0	NA	intron (NM_001172646, intron 1 of 37)	LTR33|LTR|ERVL	68137	NM_001172646	5332	Hs.472101	NM_000933	ENSG00000101333	PLCB4	ARCND2|PI-PLC	phospholipase C beta 4	protein-coding
3629	chr21	10827212	10827221	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	163727	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
6127	chrUn_gl000216	5748	6328	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5501	chr7	146332687	146332995	+	0	NA	intron (NM_014141, intron 1 of 23)	intron (NM_014141, intron 1 of 23)	461860	NR_110829	101928700	Hs.571218	NR_110829	ENSG00000236795	LOC101928700	-	uncharacterized LOC101928700	ncRNA
3930	chr3	123477090	123477536	+	0	NA	intron (NM_053027, intron 4 of 32)	intron (NM_053027, intron 4 of 32)	68822	NR_046629	100873940	Hs.667316	NR_046629	ENSG00000250174	MYLK-AS2	-	MYLK antisense RNA 2	ncRNA
946	chr11	72084552	72084620	+	0	NA	intron (NM_030813, intron 4 of 16)	intron (NM_030813, intron 4 of 16)	61142	NM_001258393	81570	Hs.523877	NM_030813	ENSG00000162129	CLPB	ANKCLB|HSP78|MEGCANN|MGCA7|SKD3	ClpB homolog, mitochondrial AAA ATPase chaperonin	protein-coding
2644	chr18	32287775	32287823	+	0	NA	intron (NM_001128175, intron 2 of 11)	intron (NM_001128175, intron 2 of 11)	-2397	NM_032978	1837	Hs.643454	NM_001390	ENSG00000134769	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin alpha	protein-coding
1361	chr12	117157027	117157205	+	0	NA	intron (NM_024738, intron 4 of 4)	intron (NM_024738, intron 4 of 4)	18759	NM_024738	79794	Hs.592011	NM_024738	ENSG00000111412	C12orf49	-	chromosome 12 open reading frame 49	protein-coding
6063	chr9	128666970	128667229	+	0	NA	intron (NR_024123, intron 2 of 6)	intron (NR_024123, intron 2 of 6)	156621	NM_001134778	5090	Hs.428027	NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
5811	chr8	140808004	140808144	+	0	NA	intron (NM_031466, intron 21 of 22)	intron (NM_031466, intron 21 of 22)	-92775	NM_001282534	51305	Hs.493037	NM_001282534	ENSG00000169427	KCNK9	K2p9.1|KT3.2|TASK-3|TASK3	potassium two pore domain channel subfamily K member 9	protein-coding
3864	chr3	73160064	73160162	+	0	NA	Intergenic	CpG	49303	NM_018029	55096	Hs.658858	NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus-like nucleoprotein 2	protein-coding
3155	chr2	90377438	90377474	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1265572	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
5079	chr6	157508494	157508710	+	0	NA	intron (NM_020732, intron 13 of 19)	intron (NM_020732, intron 13 of 19)	236689	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
3773	chr22	26327030	26327242	+	0	NA	intron (NM_001318245, intron 34 of 43)	intron (NM_001318245, intron 34 of 43)	189025	NM_001318245	84700	Hs.417959	NM_032608	ENSG00000133454	MYO18B	KFS4	myosin XVIIIB	protein-coding
5025	chr6	123065791	123066224	+	0	NA	Intergenic	HERVE_a-int|LTR|ERV1	-4339	NM_001319042	2173	Hs.26770	NM_001446	ENSG00000164434	FABP7	B-FABP|BLBP|FABPB|MRG	fatty acid binding protein 7	protein-coding
3280	chr2	159830212	159830234	+	0	NA	intron (NM_033394, intron 1 of 26)	intron (NM_033394, intron 1 of 26)	5077	NM_033394	85461	Hs.61590	NM_033394	ENSG00000115183	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
1465	chr13	39165423	39165536	+	0	NA	intron (NR_126377, intron 2 of 2)	intron (NR_126377, intron 2 of 2)	23618	NR_046999	100874147	Hs.555371	NR_046999		LINC00366	-	long intergenic non-protein coding RNA 366	ncRNA
2990	chr2	40478620	40478899	+	0	NA	intron (NM_021097, intron 1 of 9)	intron (NM_021097, intron 1 of 9)	178685	NM_001112801	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding
1397	chr12	125424306	125424727	+	0	NA	Intergenic	tRNA-Ala-GCG|tRNA|tRNA	24423	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
3678	chr21	36628856	36629104	+	0	NA	Intergenic	Intergenic	-207385	NM_001754	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
941	chr11	72020072	72020117	+	0	NA	intron (NM_030813, intron 8 of 16)	intron (NM_030813, intron 8 of 16)	-64874	NM_005169	401	Hs.731115	NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2a	protein-coding
6051	chr9	120162826	120163188	+	0	NA	intron (NM_014010, intron 1 of 21)	intron (NM_014010, intron 1 of 21)	14310	NM_014010	23245	Hs.601562	NM_014010	ENSG00000148219	ASTN2	bA67K19.1	astrotactin 2	protein-coding
583	chr10	39079196	39079566	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	89654	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
4848	chr6	61902065	61902135	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-381908	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
3436	chr2	236826381	236826634	+	0	NA	intron (NM_014914, intron 11 of 16)	intron (NM_014914, intron 11 of 16)	250145	NM_001485	2637	Hs.184945	NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
5063	chr6	153466477	153466853	+	0	NA	Intergenic	L1PBa|LINE|L1	-14276	NM_012419	26575	Hs.166313	NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G-protein signaling 17	protein-coding
1869	chr14	80072189	80072255	+	0	NA	intron (NM_001105250, intron 2 of 6)	intron (NM_001105250, intron 2 of 6)	326540	NR_073546	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
3190	chr2	97610813	97611107	+	0	NA	intron (NM_001122646, intron 8 of 16)	intron (NM_001122646, intron 8 of 16)	26117	NR_110209	101927053	Hs.677537	NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
591	chr10	39088469	39088484	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	98749	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
2304	chr16	52299380	52299743	+	0	NA	intron (NR_135281, intron 1 of 2)	intron (NR_135281, intron 1 of 2)	7085	NR_135281	283854	Hs.266768	NR_135281	ENSG00000260887	CASC22	LINC01373|LincRNA-ENST00000515084|TCONS_00024290	cancer susceptibility candidate 22 (non-protein coding)	ncRNA
3846	chr3	37534843	37535153	+	0	NA	intron (NM_002207, intron 4 of 27)	intron (NM_002207, intron 4 of 27)	41185	NM_002207	3680	Hs.113157	NM_002207	ENSG00000144668	ITGA9	ALPHA-RLC|ITGA4L|RLC	integrin subunit alpha 9	protein-coding
3481	chr20	12572161	12572354	+	0	NA	Intergenic	Intergenic	345354	NR_109872	102606466	Hs.602196	NR_109872		LOC102606466	-	uncharacterized LOC102606466	ncRNA
2804	chr19	2984341	2984715	+	0	NA	intron (NM_024760, intron 4 of 15)	AluSx|SINE|Alu	6992	NM_001143986	79816	Hs.334507	NM_024760	ENSG00000104953	TLE6	GRG6|PREMBL	transducin like enhancer of split 6	protein-coding
2341	chr16	67397444	67397688	+	0	NA	exon (NM_001161575, exon 3 of 11)	exon (NM_001161575, exon 3 of 11)	16308	NM_001161575	55282	Hs.125139	NM_018296	ENSG00000159708	LRRC36	RORBP70|XLHSRF2	leucine rich repeat containing 36	protein-coding
3583	chr21	10084977	10085007	+	0	NA	Intergenic	(GAATG)n|Simple_repeat|Simple_repeat	-116398	NR_038328	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
4078	chr3	197098227	197098477	+	0	NA	Intergenic	Intergenic	-72209	NM_001290983	1739	Hs.292549	NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs large MAGUK scaffold protein 1	protein-coding
5123	chr7	7900732	7901361	+	0	NA	intron (NM_001302348, intron 3 of 3)	intron (NM_001302348, intron 3 of 3)	-107328	NM_138426	113263	Hs.131673	NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
4149	chr4	49129525	49129765	+	0	NA	Intergenic	Intergenic	140986	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
6467	chrY	13868350	13868556	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	664936	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4990	chr6	107514102	107514296	+	0	NA	intron (NM_020381, intron 7 of 7)	intron (NM_020381, intron 7 of 7)	-78563	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
102	chr1	42401999	42402182	+	0	NA	intron (NR_038261, intron 1 of 3)	Charlie17a|DNA|hAT-Charlie	-17594	NR_038260	59269	Hs.403972	NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
1920	chr14	89770736	89770929	+	0	NA	intron (NM_001085471, intron 3 of 6)	intron (NM_001085471, intron 3 of 6)	112622	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
3827	chr3	15354837	15355036	+	0	NA	intron (NM_001018009, intron 2 of 8)	intron (NM_001018009, intron 2 of 8)	19200	NM_004844	9467	Hs.257761	NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
5157	chr7	26459094	26459421	+	0	NA	intron (NR_015364, intron 1 of 4)	intron (NR_015364, intron 1 of 4)	16149	NR_015364	441204	Hs.587432	NR_015364		LOC441204	-	uncharacterized LOC441204	ncRNA
4589	chr5	152501797	152501821	+	0	NA	Intergenic	Intergenic	-149900	NR_109877	101927134	Hs.531423	NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA
2992	chr2	41950295	41950429	+	0	NA	Intergenic	Intergenic	-154333	NR_033996	388942	Hs.631883	NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
5414	chr7	125156464	125156465	+	0	NA	Intergenic	Intergenic	-252119	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
4942	chr6	92369529	92369545	+	0	NA	intron (NR_104154, intron 2 of 3)	intron (NR_104154, intron 2 of 3)	30609	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA
2639	chr18	31919161	31919359	+	0	NA	Intergenic	Intergenic	-115745	NM_001198546	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
4227	chr4	67918561	67918698	+	0	NA	Intergenic	Intergenic	369089	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
3483	chr20	13181454	13181825	+	0	NA	Intergenic	MIRb|SINE|MIR	-20779	NM_080826	140862	Hs.559353	NM_080826	ENSG00000101230	ISM1	C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1	isthmin 1	protein-coding
1218	chr12	68744500	68744651	+	0	NA	Intergenic	Intergenic	-18414	NM_020128	56890	Hs.655702	NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
4409	chr5	7209211	7209412	+	0	NA	Intergenic	Intergenic	60156	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
2398	chr16	90062020	90062060	+	0	NA	non-coding (NR_003227, exon 10 of 10)	non-coding (NR_003227, exon 10 of 10)	14489	NM_024043	79007	Hs.301394	NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
5036	chr6	134995710	134996271	+	0	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-134847	NR_125855	101928304	Hs.555076	NR_125855		LOC101928304	-	uncharacterized LOC101928304	ncRNA
259	chr1	117498913	117499112	+	0	NA	intron (NM_020440, intron 4 of 8)	intron (NM_020440, intron 4 of 8)	-45360	NM_004258	9398	Hs.654598	NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
6194	chrUn_gl000216	80616	80760	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5290	chr7	68698296	68698554	+	0	NA	Intergenic	Intergenic	364056	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
1625	chr13	113871202	113871258	+	0	NA	intron (NM_001008895, intron 2 of 19)	intron (NM_001008895, intron 2 of 19)	7411	NM_001008895	8451	Hs.339735	NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
163	chr1	62850572	62850660	+	0	NA	Intergenic	Intergenic	-51359	NM_001017415	7398	Hs.35086	NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
4070	chr3	193923504	193923677	+	0	NA	intron (NR_125403, intron 1 of 2)	intron (NR_125403, intron 1 of 2)	506	NR_125404	100505920	Hs.436654	NR_125403	ENSG00000225742	LINC02036	-	long intergenic non-protein coding RNA 2036	ncRNA
3898	chr3	106961366	106961437	+	0	NA	intron (NR_028302, intron 1 of 3)	L1ME3|LINE|L1	1862	NR_028302	344595	Hs.543039	NR_028301	ENSG00000243701	DUBR	DUM|LINC00883|LINC0883	DPPA2 upstream binding RNA	ncRNA
1106	chr12	12008559	12008671	+	0	NA	intron (NM_001987, intron 4 of 7)	intron (NM_001987, intron 4 of 7)	205827	NM_001987	2120	Hs.504765	NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant 6	protein-coding
1836	chr14	75867512	75867645	+	0	NA	Intergenic	Intergenic	-26931	NM_001135047	122953	Hs.196482	NM_130469	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
1531	chr13	97909488	97909563	+	0	NA	intron (NM_001306070, intron 1 of 7)	intron (NM_001306070, intron 1 of 7)	34975	NM_144778	10150	Hs.657347	NM_144778	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
2731	chr18	50319248	50319251	+	0	NA	intron (NM_005215, intron 2 of 28)	HUERS-P3b-int|LTR|ERV1	-444222	NR_130465	100616232		NR_130465	ENSG00000263872	MIR4528	-	microRNA 4528	ncRNA
5160	chr7	27072905	27072970	+	0	NA	Intergenic	Intergenic	62688	NM_005522	3198	Hs.67397	NM_005522	ENSG00000105991	HOXA1	BSAS|HOX1|HOX1F	homeobox A1	protein-coding
3976	chr3	149136969	149137026	+	0	NA	Intergenic	Intergenic	-41429	NM_014220	4071	Hs.351316	NM_014220	ENSG00000169908	TM4SF1	H-L6|L6|M3S1|TAAL6	transmembrane 4 L six family member 1	protein-coding
2929	chr2	5550147	5550371	+	0	NA	Intergenic	Intergenic	280991	NR_110580	102723818	Hs.128107	NR_110580		LINC01248	-	long intergenic non-protein coding RNA 1248	ncRNA
5640	chr8	62602220	62602594	+	0	NA	promoter-TSS (NM_001164750)	promoter-TSS (NM_001164750)	1	NM_001164752	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
5681	chr8	82130273	82130419	+	0	NA	Intergenic	Intergenic	-62372	NM_001444	2171	Hs.408061	NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
2738	chr18	53073211	53073212	+	0	NA	intron (NM_001330604, intron 5 of 19)	intron (NM_001330604, intron 5 of 19)	-1985	NM_001306208	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
1333	chr12	112547141	112547252	+	0	NA	promoter-TSS (NM_024953)	promoter-TSS (NM_024953)	-561	NM_024953	80018	Hs.530941	NM_024953	ENSG00000111300	NAA25	C12orf30|MDM20|NAP1	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding
5629	chr8	59879153	59879362	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	152510	NM_014729	9760	Hs.491805	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
5179	chr7	30183717	30184422	+	0	NA	intron (NM_152793, intron 1 of 2)	MIRc|SINE|MIR	9517	NM_152793	222166	Hs.200100	NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
5447	chr7	129913323	129913436	+	0	NA	intron (NM_001869, intron 5 of 10)	intron (NM_001869, intron 5 of 10)	6676	NM_001869	1358	Hs.490038	NM_001869	ENSG00000158516	CPA2	-	carboxypeptidase A2	protein-coding
2770	chr18	60350063	60350078	+	0	NA	Intergenic	Intergenic	-32602	NM_194449	23239	Hs.465337	NM_194449	ENSG00000081913	PHLPP1	PHLPP|PLEKHE1|PPM3A|SCOP	PH domain and leucine rich repeat protein phosphatase 1	protein-coding
3859	chr3	56951840	56951984	+	0	NA	intron (NM_001128615, intron 3 of 12)	intron (NM_001128615, intron 3 of 12)	-1413	NM_001289698	50650	Hs.476402	NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
6165	chrUn_gl000216	23781	24361	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
3087	chr2	85940902	85941232	+	0	NA	Intergenic	Intergenic	19653	NM_006433	10578	Hs.105806	NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
6208	chrUn_gl000216	155397	155417	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
442	chr1	209426087	209426326	+	0	NA	Intergenic	Intergenic	-72595	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
5524	chr7	158831072	158831631	+	0	NA	intron (NM_001304522, intron 4 of 10)	intron (NM_001304522, intron 4 of 10)	30306	NR_024394	154822	Hs.544783	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	ncRNA
4044	chr3	182083224	182083348	+	0	NA	Intergenic	Intergenic	120864	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA
4492	chr5	77312877	77313083	+	0	NA	intron (NM_003664, intron 25 of 26)	intron (NM_003664, intron 25 of 26)	58909	NR_105013	101929154	Hs.252895	NR_105012		LOC101929154	-	uncharacterized LOC101929154	ncRNA
2156	chr16	4103214	4103384	+	0	NA	intron (NM_001116, intron 2 of 10)	intron (NM_001116, intron 2 of 10)	62887	NM_001116	115	Hs.391860	NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
1577	chr13	103968503	103968702	+	0	NA	Intergenic	Intergenic	-108948	NR_126374	104326190	Hs.334381	NR_126374	ENSG00000234551	LINC01309	TCONS_l2_00007459	long intergenic non-protein coding RNA 1309	ncRNA
1572	chr13	102693020	102693254	+	0	NA	intron (NM_001321945, intron 2 of 5)	intron (NM_001321945, intron 2 of 5)	5217	NR_039854	100616239		NR_039854	ENSG00000264482	MIR4705	-	microRNA 4705	ncRNA
2851	chr19	44032366	44032545	+	0	NA	Intergenic	Intergenic	-1047	NM_001320867	23474	Hs.7486	NM_014297	ENSG00000105755	ETHE1	HSCO|YF13H12	ETHE1, persulfide dioxygenase	protein-coding
886	chr11	51581947	51582109	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	66746	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
4984	chr6	107475146	107475799	+	0	NA	3' UTR (NM_020381, exon 8 of 8)	3' UTR (NM_020381, exon 8 of 8)	-39836	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
4733	chr6	23999261	24000175	+	0	NA	Intergenic	Intergenic	-126696	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
2835	chr19	24619819	24620144	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-273732	NR_003603	100101266	Hs.149312	NR_003603	ENSG00000268442	HAVCR1P1	-	hepatitis A virus cellular receptor 1 pseudogene 1	pseudo
1329	chr12	107525119	107525288	+	0	NA	Intergenic	Intergenic	-37568	NM_004075	1407	Hs.151573	NM_004075	ENSG00000008405	CRY1	PHLL1	cryptochrome circadian clock 1	protein-coding
3728	chr22	16849919	16850003	+	0	NA	Intergenic	Intergenic	223739	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
5440	chr7	126528050	126528292	+	0	NA	intron (NM_001127323, intron 6 of 10)	intron (NM_001127323, intron 6 of 10)	170067	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
5562	chr8	22418925	22419069	+	0	NA	intron (NM_005775, intron 6 of 20)	intron (NM_005775, intron 6 of 20)	-4182	NM_001018003	10174	Hs.528572	NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
4186	chr4	49633268	49633642	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	644796	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3568	chr20	43357488	43357506	+	0	NA	intron (NR_132377, intron 3 of 4)	L1ME2|LINE|L1	14012	NM_001323369	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
5642	chr8	62619832	62619844	+	0	NA	intron (NM_032466, intron 1 of 13)	L1ME3C|LINE|L1	7361	NM_001164755	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
3243	chr2	135597238	135597419	+	0	NA	intron (NM_138326, intron 1 of 9)	intron (NM_138326, intron 1 of 9)	1142	NM_001307983	130013	Hs.655728	NM_138326	ENSG00000153086	ACMSD	-	aminocarboxymuconate semialdehyde decarboxylase	protein-coding
3777	chr22	29218847	29218887	+	0	NA	Intergenic	Intergenic	-22307	NM_005080	7494	Hs.437638	NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
320	chr1	149035774	149035813	+	0	NA	intron (NR_104217, intron 2 of 17).2	HSATII|Satellite|Satellite	73932	NR_104217	101929780	Hs.534675	NR_104217	ENSG00000272150	NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family member 25, pseudogene	pseudo
6273	chrX	47400873	47400962	+	0	NA	Intergenic	Intergenic	-19582	NM_001654	369	Hs.446641	NM_001654	ENSG00000078061	ARAF	A-RAF|ARAF1|PKS2|RAFA1	A-Raf proto-oncogene, serine/threonine kinase	protein-coding
5663	chr8	73735212	73735382	+	0	NA	intron (NM_004770, intron 2 of 2)	intron (NM_004770, intron 2 of 2)	91017	NR_110656	101926908	Hs.680588	NR_110656	ENSG00000253726	LOC101926908	-	uncharacterized LOC101926908	ncRNA
3528	chr20	29812715	29812787	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-32716	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
3756	chr22	18883639	18884108	+	0	NA	Intergenic	AluSc8|SINE|Alu	-1929	NR_136571	100996432	Hs.631668	NR_136571		LINC01663	-	long intergenic non-protein coding RNA 1663	ncRNA
811	chr11	20510090	20510122	+	0	NA	intron (NM_005788, intron 13 of 15)	intron (NM_005788, intron 13 of 15)	101030	NM_005788	10196	Hs.152337	NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
6184	chrUn_gl000216	75600	75615	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
465	chr1	220395347	220395448	+	0	NA	intron (NM_012414, intron 2 of 34)	intron (NM_012414, intron 2 of 34)	-21379	NR_002994	677818	Hs.730572	NR_002994	ENSG00000222370	SNORA36B	ACA36b	small nucleolar RNA, H/ACA box 36B	snoRNA
249	chr1	112435468	112435496	+	0	NA	intron (NM_004980, intron 2 of 7)	intron (NM_004980, intron 2 of 7)	-16797	NR_046619	100873995	Hs.535274	NR_046619	ENSG00000237556	KCND3-AS1	-	KCND3 antisense RNA 1	ncRNA
1612	chr13	112331965	112332014	+	0	NA	Intergenic	Intergenic	83633	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA
819	chr11	20948235	20948417	+	0	NA	intron (NM_201551, intron 7 of 18)	intron (NM_201551, intron 7 of 18)	257229	NM_001288714	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding
5280	chr7	64954878	64955008	+	0	NA	Intergenic	(CATTC)n|Simple_repeat|Simple_repeat	116231	NM_007139	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
1177	chr12	41682091	41682104	+	0	NA	intron (NM_001164595, intron 3 of 9)	intron (NM_001164595, intron 3 of 9)	99847	NM_001164595	29951	Hs.380044	NM_013377	ENSG00000165966	PDZRN4	LNX4|SAMCAP3L	PDZ domain containing ring finger 4	protein-coding
1189	chr12	46603453	46603595	+	0	NA	intron (NM_001077484, intron 5 of 16)	intron (NM_001077484, intron 5 of 16)	56754	NM_001278389	81539	Hs.533770	NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
3680	chr21	36739838	36739841	+	0	NA	Intergenic	Intergenic	213223	NR_073512	100506403	Hs.536609	NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
1748	chr14	61084968	61085462	+	0	NA	Intergenic	Intergenic	-20719	NR_126480	104548971		NR_126480		SALRNA1	SAL-RNA1|XLOC_023166	senescence associated long non-coding RNA 1	ncRNA
2127	chr15	92416392	92416543	+	0	NA	intron (NR_135775, intron 1 of 10)	intron (NR_135775, intron 1 of 10)	18937	NR_135775	28232	Hs.311187	NM_013272	ENSG00000176463	SLCO3A1	OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11	solute carrier organic anion transporter family member 3A1	protein-coding
858	chr11	51567707	51568180	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	52661	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
3768	chr22	24902821	24903027	+	0	NA	intron (NM_016327, intron 3 of 9)	intron (NM_016327, intron 3 of 9)	11673	NM_016327	51733	Hs.731656	NM_016327	ENSG00000100024	UPB1	BUP1	beta-ureidopropionase 1	protein-coding
5131	chr7	11215330	11215677	+	0	NA	Intergenic	Intergenic	202004	NR_033435	9678	Hs.655688	NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
385	chr1	187846189	187846362	+	0	NA	Intergenic	Intergenic	433515	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA
1359	chr12	116770922	116771310	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-56125	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13 like	protein-coding
1479	chr13	49390643	49390841	+	0	NA	Intergenic	Intergenic	-159306	NM_001079673	22862	Hs.508010	NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
5095	chr6	169989807	169989963	+	0	NA	intron (NM_182552, intron 23 of 25)	intron (NM_182552, intron 23 of 25)	112274	NM_182552	253769	Hs.131903	NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
2578	chr18	10020028	10020769	+	0	NA	Intergenic	L2c|LINE|L2	106443	NM_003574	9218	Hs.165195	NM_003574	ENSG00000101558	VAPA	VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
5344	chr7	91065817	91066079	+	0	NA	Intergenic	Intergenic	172165	NM_003505	8321	Hs.94234	NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
971	chr11	92628890	92629017	+	0	NA	3' UTR (NM_001008781, exon 25 of 25)	3' UTR (NM_001008781, exon 25 of 25)	19841	NR_135091	105369431	Hs.532389	NR_135091		LOC105369431	-	uncharacterized LOC105369431	ncRNA
5605	chr8	43094621	43095356	+	0	NA	Intergenic	SAR|Satellite|Satellite	-52597	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
4781	chr6	37275904	37276211	+	0	NA	intron (NM_017772, intron 8 of 12)	intron (NM_017772, intron 8 of 12)	-45691	NR_046399	9025	Hs.485278	NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding
4716	chr6	21390979	21391195	+	0	NA	Intergenic	Intergenic	121036	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
479	chr1	224200346	224200433	+	0	NA	intron (NR_136593, intron 2 of 4)	(GAATG)n|Satellite|Satellite	19957	NR_136593	100287497	Hs.568390	NR_136590		LOC100287497	-	septin 7 pseudogene	pseudo
847	chr11	34653623	34653659	+	0	NA	promoter-TSS (NM_001206616)	promoter-TSS (NM_001206616)	-370	NM_001206616	26298	Hs.653859	NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
1166	chr12	34846789	34846876	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	671616	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
3091	chr2	89830457	89830569	+	0	NA	Intergenic	HSATII|Satellite|Satellite	718629	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
2166	chr16	9241265	9241286	+	0	NA	Intergenic	AluY|SINE|Alu	55738	NM_014117	29035	Hs.221497	NM_014117	ENSG00000182831	C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
5637	chr8	61705134	61705796	+	0	NA	intron (NM_017780, intron 3 of 37)	intron (NM_017780, intron 3 of 37)	51647	NM_001316690	55636	Hs.20395	NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
1378	chr12	119696387	119696504	+	0	NA	Intergenic	MIRb|SINE|MIR	44740	NR_024246	144742	Hs.524782	NR_024246	ENSG00000281196	LINC00934	-	long intergenic non-protein coding RNA 934	ncRNA
1054	chr11	126854369	126854577	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	3965	NR_036126	100422918		NR_036126	ENSG00000266215	MIR3167	-	microRNA 3167	ncRNA
2821	chr19	13023772	13023825	+	0	NA	intron (NM_001105578, intron 2 of 5)	intron (NM_001105578, intron 2 of 5)	6288	NM_001105578	256126	Hs.655173	NM_001105578	ENSG00000161860	SYCE2	CESC1	synaptonemal complex central element protein 2	protein-coding
2101	chr15	74789730	74789959	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	36238	NR_120377	440288	Hs.611046	NR_038448	ENSG00000247240	UBL7-AS1	-	UBL7 antisense RNA 1 (head to head)	ncRNA
619	chr10	39138214	39138240	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	148500	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
5726	chr8	95971665	95971948	+	0	NA	Intergenic	AluJb|SINE|Alu	-10191	NM_001135733	94241	Hs.492261	NM_033285	ENSG00000164938	TP53INP1	SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1	tumor protein p53 inducible nuclear protein 1	protein-coding
4996	chr6	107951226	107951335	+	0	NA	intron (NM_018013, intron 5 of 6)	intron (NM_018013, intron 5 of 6)	102320	NM_001286409	256380	Hs.486109	NM_198081	ENSG00000146285	SCML4	dJ47M23.1	sex comb on midleg-like 4 (Drosophila)	protein-coding
3797	chr22	39320212	39320376	+	0	NA	Intergenic	Intergenic	-33233	NM_145699	200315	Hs.226307	NM_145699	ENSG00000128383	APOBEC3A	A3A|ARP3|PHRBN|bK150C2.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3A	protein-coding
3616	chr21	10805453	10805485	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	185474	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
621	chr10	39152379	39152615	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	162770	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
6056	chr9	126404925	126405256	+	0	NA	intron (NM_024820, intron 9 of 20)	intron (NM_024820, intron 9 of 20)	-157189	NR_106972	102465688		NR_106972	ENSG00000274932	MIR7150	hsa-mir-7150	microRNA 7150	ncRNA
2310	chr16	52504515	52504520	+	0	NA	intron (NM_001080430, intron 1 of 6)	intron (NM_001080430, intron 1 of 6)	76289	NM_001080430	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
2495	chr17	55994860	55995142	+	0	NA	intron (NM_001271875, intron 1 of 10)	MIR|SINE|MIR	-14251	NM_001292025	404093	Hs.46679	NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
4908	chr6	83403184	83403204	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	329233	NM_001166392	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
3395	chr2	221813588	221814162	+	0	NA	Intergenic	Intergenic	623203	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
3052	chr2	66218276	66218682	+	0	NA	Intergenic	Intergenic	366981	NR_039938	100616464		NR_039938	ENSG00000264525	MIR4778	-	microRNA 4778	ncRNA
2322	chr16	52586856	52586973	+	0	NA	intron (NR_033920, intron 3 of 3)	intron (NR_033920, intron 3 of 3)	-5200	NM_001146188	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
2438	chr17	25266588	25267086	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	149430	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
3334	chr2	191333514	191333549	+	0	NA	intron (NM_017694, intron 3 of 7)	intron (NM_017694, intron 3 of 7)	60450	NM_017694	54842	Hs.418581	NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
3246	chr2	136899047	136899158	+	0	NA	Intergenic	Intergenic	-23377	NM_003467	7852	Hs.593413	NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS	C-X-C motif chemokine receptor 4	protein-coding
4179	chr4	49153943	49156091	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	166358	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
4778	chr6	33846741	33847014	+	0	NA	Intergenic	Intergenic	17807	NR_038989	100507584	Hs.547104	NR_038989	ENSG00000249346	LINC01016	-	long intergenic non-protein coding RNA 1016	ncRNA
5899	chr9	66832973	66833021	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-89970	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
5481	chr7	139179530	139180126	+	0	NA	Intergenic	Intergenic	-11371	NM_198508	346689	Hs.17572	NM_198508	ENSG00000188883	KLRG2	CLEC15B	killer cell lectin like receptor G2	protein-coding
5355	chr7	95207897	95208039	+	0	NA	Intergenic	Intergenic	17957	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	pyruvate dehydrogenase kinase 4	protein-coding
377	chr1	184822927	184823258	+	0	NA	intron (NM_052966, intron 5 of 13)	MER33|DNA|hAT-Charlie	-99051	NR_135118	80267	Hs.523811	NM_025191	ENSG00000116406	EDEM3	C1orf22	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
2050	chr15	60651707	60651731	+	0	NA	intron (NM_001002857, intron 6 of 13)	intron (NM_001002857, intron 6 of 13)	38466	NM_004039	302	Hs.511605	NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
602	chr10	39108658	39108808	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	119006	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
3815	chr22	47080913	47081128	+	0	NA	3' UTR (NM_022766, exon 13 of 13)	3' UTR (NM_022766, exon 13 of 13)	53132	NM_022766	64781	Hs.200668	NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
1311	chr12	105803697	105804258	+	0	NA	Intergenic	Intergenic	79563	NM_001145199	387882	Hs.368938	NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
1787	chr14	68487665	68487913	+	0	NA	intron (NM_001321809, intron 7 of 11)	intron (NM_001321809, intron 7 of 11)	197480	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
6062	chr9	128666646	128666969	+	0	NA	intron (NR_024123, intron 2 of 6)	intron (NR_024123, intron 2 of 6)	156329	NM_001134778	5090	Hs.428027	NM_006195	ENSG00000167081	PBX3	-	PBX homeobox 3	protein-coding
5057	chr6	143833980	143834348	+	0	NA	Intergenic	AluSx|SINE|Alu	-1144	NM_032020	2519	Hs.17680	NM_032020	ENSG00000001036	FUCA2	dJ20N2.5	fucosidase, alpha-L- 2, plasma	protein-coding
612	chr10	39124459	39124699	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	134852	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
936	chr11	72018526	72019559	+	0	NA	intron (NM_030813, intron 9 of 16)	intron (NM_030813, intron 9 of 16)	-63822	NM_005169	401	Hs.731115	NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2a	protein-coding
1391	chr12	123617070	123617152	+	0	NA	Intergenic	L1MB4|LINE|L1	-22075	NM_001300801	57605	Hs.272759	NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
5736	chr8	101428315	101428575	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	33454	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
5234	chr7	61083147	61083394	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1681164	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
3579	chr20	52226721	52227135	+	0	NA	intron (NR_134576, intron 1 of 2)	L1ME4a|LINE|L1	2035	NR_134576	105372672	Hs.259350	NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
5110	chr7	3097160	3097178	+	0	NA	Intergenic	Helitron1Nb_Mam|RC|Helitron	-13590	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|PPBL	caspase recruitment domain family member 11	protein-coding
4510	chr5	110783370	110783670	+	0	NA	intron (NM_001323374, intron 7 of 11)	intron (NM_001323374, intron 7 of 11)	-64404	NR_040093	100505678	Hs.745061	NR_040093	ENSG00000246859	STARD4-AS1	-	STARD4 antisense RNA 1	ncRNA
2794	chr18	70207085	70207138	+	0	NA	intron (NM_182511, intron 3 of 4)	intron (NM_182511, intron 3 of 4)	4612	NM_182511	147381	Hs.569851	NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
701	chr10	80289654	80289732	+	0	NA	Intergenic	Intergenic	262608	NR_073447	414243	Hs.55047	NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
5884	chr9	28215513	28215695	+	0	NA	intron (NM_152570, intron 5 of 6)	intron (NM_152570, intron 5 of 6)	503699	NM_152570	158038	Hs.444665	NM_152570	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
3710	chr21	40357787	40357864	+	0	NA	Intergenic	Intergenic	-8125	NR_109962	101928435	Hs.385528	NR_109962	ENSG00000232837	LINC01700	-	long intergenic non-protein coding RNA 1700	ncRNA
6251	chrX	7532701	7533057	+	0	NA	Intergenic	Intergenic	-277424	NM_013452	26609	Hs.278906	NM_013452	ENSG00000182583	VCX	VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1	variable charge, X-linked	protein-coding
214	chr1	89720252	89720795	+	0	NA	Intergenic	L1MA2|LINE|L1	18021	NM_052942	115362	Hs.513726	NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
3630	chr21	10833333	10833372	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	157591	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2708	chr18	45743423	45743648	+	0	NA	intron (NM_001318841, intron 2 of 4)	MLT1C|LTR|ERVL-MaLR	-79855	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
2789	chr18	67302349	67302444	+	0	NA	intron (NM_152721, intron 3 of 7)	LTR16E2|LTR|ERVL	165229	NR_134579	105372179	Hs.666269	NR_134579	ENSG00000264845	LOC105372179	-	uncharacterized LOC105372179	ncRNA
1650	chr14	28465874	28466193	+	0	NA	Intergenic	Intergenic	-363549	NR_130461	100422830		NR_130461	ENSG00000264657	MIR3171	-	microRNA 3171	ncRNA
2074	chr15	69833619	69833838	+	0	NA	Intergenic	Intergenic	-20331	NR_026979	145837	Hs.410126	NR_026979		DRAIC	-	downregulated RNA in cancer, inhibitor of cell invasion and migration	ncRNA
2539	chr17	76390635	76390800	+	0	NA	intron (NR_110602, intron 2 of 8)	AluSp|SINE|Alu	16018	NM_024419	9489	Hs.654671	NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
2547	chr17_gl000205_random	86646	86680	+	0	NA	Intergenic	Intergenic	-29960	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo
731	chr10	103124537	103124567	+	0	NA	intron (NM_003939, intron 1 of 13)	intron (NM_003939, intron 1 of 13)	10762	NM_033637	8945	Hs.643802	NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
3639	chr21	10843144	10843350	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	147696	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2779	chr18	63154908	63155219	+	0	NA	Intergenic	Intergenic	-262425	NM_033646	1005	Hs.541003	NM_004361	ENSG00000081138	CDH7	CDH7L1	cadherin 7	protein-coding
4281	chr4	98270495	98270790	+	0	NA	Intergenic	Intergenic	-17435	NR_102713	101410545	Hs.628520	NR_102713	ENSG00000251620	STPG2-AS1	-	STPG2 antisense RNA 1	ncRNA
2139	chr15	97859481	97859651	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	205475	NR_120324	101927286	Hs.611279	NR_120324	ENSG00000259664	LOC101927286	-	uncharacterized LOC101927286	ncRNA
5573	chr8	27686289	27686579	+	0	NA	intron (NM_018492, intron 2 of 7)	L1MEc|LINE|L1	9178	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|HEL164|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
768	chr11	12777826	12778027	+	0	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	81957	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
1928	chr14	90910674	90910863	+	0	NA	Intergenic	MIR|SINE|MIR	-10806	NR_033986	400238	Hs.131037	NR_033986	ENSG00000233208	LINC00642	-	long intergenic non-protein coding RNA 642	ncRNA
6396	chrY	13800999	13801208	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	732286	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1092	chr12	3904457	3904963	+	0	NA	Intergenic	Intergenic	-42344	NM_032680	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
3877	chr3	99585230	99585434	+	0	NA	intron (NR_031662, intron 2 of 4)	intron (NR_031662, intron 2 of 4)	9715	NM_014890	11259	Hs.104672	NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
2255	chr16	33974828	33975616	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-12719	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
1756	chr14	61669558	61669750	+	0	NA	Intergenic	L1MC2|LINE|L1	78876	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
1636	chr14	21788259	21788535	+	0	NA	intron (NM_020366, intron 11 of 23)	intron (NM_020366, intron 11 of 23)	32261	NM_020366	57096	Hs.126035	NM_020366	ENSG00000092200	RPGRIP1	CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding
2491	chr17	55129434	55129762	+	0	NA	Intergenic	Intergenic	6759	NR_002818	376412	Hs.132299	NR_002818	ENSG00000261192	RNF126P1	-	ring finger protein 126 pseudogene 1	pseudo
4885	chr6	80507577	80508051	+	0	NA	Intergenic	Intergenic	14149	NR_131786	89758	Hs.288213	NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
4976	chr6	105768640	105768942	+	0	NA	intron (NM_002726, intron 10 of 14)	intron (NM_002726, intron 10 of 14)	82208	NM_002726	5550	Hs.436564	NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
338	chr1	168019393	168019602	+	0	NA	intron (NM_018442, intron 15 of 19)	intron (NM_018442, intron 15 of 19)	51599	NR_031702	100313835		NR_031702	ENSG00000221545	MIR1255B2	MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2	microRNA 1255b-2	ncRNA
5478	chr7	138310482	138310685	+	0	NA	intron (NM_001331192, intron 10 of 12)	intron (NM_001331192, intron 10 of 12)	38386	NM_001331192	136306	Hs.99414	NM_174959	ENSG00000157703	SVOPL	-	SVOP like	protein-coding
3105	chr2	89853483	89853602	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	741658	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
576	chr10	38882347	38882358	+	0	NA	Intergenic	HSATII|Satellite|Satellite	-107375	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
761	chr11	12341351	12341553	+	0	NA	intron (NM_032867, intron 4 of 8)	intron (NM_032867, intron 4 of 8)	33005	NM_032867	84953	Hs.128196	NM_032867	ENSG00000133808	MICALCL	Ebitein1	MICAL C-terminal like	protein-coding
4748	chr6	24584207	24584214	+	0	NA	promoter-TSS (NM_001252328)	promoter-TSS (NM_001252328)	-755	NM_001252328	9856	Hs.26441	NM_014809	ENSG00000137261	KIAA0319	DYLX2|DYX2|NMIG	KIAA0319	protein-coding
738	chr10	112554623	112554835	+	0	NA	intron (NM_001134363, intron 5 of 13)	intron (NM_001134363, intron 5 of 13)	75933	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
1775	chr14	65697135	65697311	+	0	NA	Intergenic	Intergenic	-8158	NR_103769	100128233	Hs.497323	NR_103769	ENSG00000255002	LOC100128233	-	uncharacterized LOC100128233	ncRNA
1415	chr12	130035023	130035215	+	0	NA	intron (NM_133448, intron 2 of 8)	intron (NM_133448, intron 2 of 8)	341973	NR_110058	101927735	Hs.569212	NR_110058	ENSG00000256699	LOC101927735	-	uncharacterized LOC101927735	ncRNA
484	chr1	224392566	224392703	+	0	NA	Intergenic	Intergenic	8347	NR_110669	101927143	Hs.638720	NR_110669	ENSG00000232628	LOC101927143	-	uncharacterized LOC101927143	ncRNA
3408	chr2	227683922	227684065	+	0	NA	Intergenic	Intergenic	-16678	NM_032276	84236	Hs.471514	NM_032276	ENSG00000144468	RHBDD1	RRP4	rhomboid domain containing 1	protein-coding
2334	chr16	54540784	54541019	+	0	NA	Intergenic	Intergenic	-136290	NR_134923	100996345	Hs.112680	NR_134922	ENSG00000261803	LINC02140	-	long intergenic non-protein coding RNA 2140	ncRNA
1078	chr11	131182334	131182643	+	0	NA	Intergenic	Intergenic	-57883	NM_001048209	50863	Hs.504352	NM_016522	ENSG00000182667	NTM	HNT|IGLON2|NTRI	neurotrimin	protein-coding
1243	chr12	93529527	93529532	+	0	NA	intron (NR_040096, intron 3 of 4)	intron (NR_040096, intron 3 of 4)	-38613	NR_120492	102724933	Hs.663947	NR_120492	ENSG00000258171	LOC102724933	-	uncharacterized LOC102724933	ncRNA
2530	chr17	75731581	75731961	+	0	NA	Intergenic	Intergenic	-7130	NR_104134	100132174	Hs.640110	NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
4833	chr6	53792161	53792173	+	0	NA	Intergenic	Intergenic	-2613	NR_125842	101927189	Hs.453592	NR_125842	ENSG00000236740	LOC101927189	-	uncharacterized LOC101927189	ncRNA
623	chr10	42354938	42355324	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	508362	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
4091	chr4	8041496	8041604	+	0	NA	intron (NM_001130083, intron 9 of 20)	intron (NM_001130083, intron 9 of 20)	32193	NM_001286688	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
3885	chr3	103637494	103638145	+	0	NA	Intergenic	Intergenic	308286	NR_030330	693127		NR_030330	ENSG00000208032	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA
1512	chr13	93372148	93372228	+	0	NA	promoter-TSS (NR_049776)	promoter-TSS (NR_049776)	20	NR_049776	100873969	Hs.577863	NR_046520	ENSG00000235984	GPC5-AS1	-	GPC5 antisense RNA 1	ncRNA
2956	chr2	18082548	18082632	+	0	NA	intron (NM_002252, intron 1 of 2)	intron (NM_002252, intron 1 of 2)	22666	NM_002252	3790	Hs.414489	NM_002252	ENSG00000170745	KCNS3	KV9.3	potassium voltage-gated channel modifier subfamily S member 3	protein-coding
4502	chr5	93227501	93227760	+	0	NA	intron (NR_028080, intron 4 of 8)	intron (NR_028080, intron 4 of 8)	-150321	NM_153216	134187	Hs.678995	NM_153216	ENSG00000248483	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding
2946	chr2	11259950	11260449	+	0	NA	intron (NR_040080, intron 6 of 8)	AluSz|SINE|Alu	12103	NR_040080	285150	Hs.329841	NM_182586	ENSG00000145063	FLJ33534	-	uncharacterized LOC285150	ncRNA
2564	chr18	3692563	3692786	+	0	NA	intron (NM_001308390, intron 4 of 10)	intron (NM_001308390, intron 4 of 10)	88939	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
2382	chr16	82363468	82363780	+	0	NA	Intergenic	Intergenic	-159795	NM_005792	10200	Hs.344400	NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
328	chr1	155903817	155904200	+	0	NA	intron (NM_014949, intron 1 of 13)	intron (NM_014949, intron 1 of 13)	225	NM_014949	22889	Hs.24656	NM_014949	ENSG00000132680	KIAA0907	BLOM7|SNORA80EHG	KIAA0907	protein-coding
6144	chrUn_gl000216	11957	12149	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
4462	chr5	49440950	49441390	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	296064	NM_198449	133418	Hs.561411	NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
628	chr10	42399756	42400817	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	463207	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
1223	chr12	78708837	78709223	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	44496	NR_135021	105369860	Hs.156898	NR_135021	ENSG00000258220	LOC105369860	-	uncharacterized LOC105369860	ncRNA
5779	chr8	120984183	120984253	+	0	NA	intron (NM_022783, intron 4 of 8)	MER68B|LTR|ERVL	98323	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR interacting protein	protein-coding
4014	chr3	174988071	174988650	+	0	NA	intron (NM_207015, intron 4 of 13)	intron (NM_207015, intron 4 of 13)	525	NR_046713	100874244	Hs.581176	NR_046713		NAALADL2-AS2	-	NAALADL2 antisense RNA 2	ncRNA
4803	chr6	46348526	46348720	+	0	NA	intron (NM_001251973, intron 2 of 4)	intron (NM_001251973, intron 2 of 4)	-54994	NM_005822	10231	Hs.440168	NM_005822	ENSG00000172348	RCAN2	CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4	regulator of calcineurin 2	protein-coding
3538	chr20	29821970	29821978	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-23493	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
4271	chr4	89871100	89871407	+	0	NA	intron (NM_014883, intron 4 of 23)	intron (NM_014883, intron 4 of 23)	107093	NM_014883	10144	Hs.97270	NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
5003	chr6	110138140	110138237	+	0	NA	intron (NM_014845, intron 22 of 22)	intron (NM_014845, intron 22 of 22)	-63769	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
733	chr10	103124791	103124898	+	0	NA	intron (NM_003939, intron 1 of 13)	AluSp|SINE|Alu	11054	NM_033637	8945	Hs.643802	NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
6249	chrX	6067967	6067993	+	0	NA	intron (NM_001282145, intron 3 of 6)	intron (NM_001282145, intron 3 of 6)	-76419	NR_136577	105373156	Hs.21107	NR_136577		LOC105373156	-	uncharacterized LOC105373156	ncRNA
3745	chr22	18877997	18877999	+	0	NA	intron (NR_136571, intron 1 of 11)	intron (NR_136571, intron 1 of 11)	3946	NR_136571	100996432	Hs.631668	NR_136571		LINC01663	-	long intergenic non-protein coding RNA 1663	ncRNA
630	chr10	42400868	42401402	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	462358	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
997	chr11	112275257	112275400	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-77627	NR_120559	101928823	Hs.126118	NR_120559	ENSG00000254968	LOC101928823	-	uncharacterized LOC101928823	ncRNA
5001	chr6	109617825	109618021	+	0	NA	intron (NR_028595, intron 2 of 3)	intron (NR_028595, intron 2 of 3)	2417	NR_028595	221262	Hs.373914	NR_028595	ENSG00000203799	CCDC162P	C6orf184|C6orf185|CCDC162|bA425D10.3|bA425D10.7	coiled-coil domain containing 162, pseudogene	pseudo
4947	chr6	92750395	92750581	+	0	NA	Intergenic	Intergenic	-350342	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA
3394	chr2	221650360	221650450	+	0	NA	Intergenic	L1MD2|LINE|L1	786673	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
608	chr10	39121381	39121410	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	131668	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
3263	chr2	148136714	148136754	+	0	NA	Intergenic	Intergenic	-465352	NM_001278580	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
1234	chr12	92067288	92067459	+	0	NA	Intergenic	Intergenic	468116	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
1649	chr14	28465608	28465873	+	0	NA	Intergenic	Intergenic	-363256	NR_130461	100422830		NR_130461	ENSG00000264657	MIR3171	-	microRNA 3171	ncRNA
5731	chr8	99878465	99878701	+	0	NA	intron (NM_001256312, intron 3 of 12)	intron (NM_001256312, intron 3 of 12)	-40674	NM_006281	6788	Hs.492333	NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
6036	chr9	112013861	112013997	+	0	NA	intron (NM_018424, intron 12 of 15)	intron (NM_018424, intron 12 of 15)	69315	NM_018424	54566	Hs.591901	NM_018424	ENSG00000095203	EPB41L4B	CG1|EHM2	erythrocyte membrane protein band 4.1 like 4B	protein-coding
2226	chr16	33887547	33887563	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	74948	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
2878	chr2	1128688	1128835	+	0	NA	intron (NM_018968, intron 4 of 16)	MIR|SINE|MIR	-181683	NR_136151	101060391	Hs.120377	NR_136151		LOC101060391	-	uncharacterized LOC101060391	ncRNA
4108	chr4	23820369	23820688	+	0	NA	intron (NM_013261, intron 7 of 12)	intron (NM_013261, intron 7 of 12)	62387	NM_001330753	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
4535	chr5	124821272	124821648	+	0	NA	Intergenic	Intergenic	-7494	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
1474	chr13	43842938	43843394	+	0	NA	intron (NM_017993, intron 13 of 16)	intron (NM_017993, intron 13 of 16)	155865	NR_047013	100874159	Hs.633241	NR_047013		LINC00400	-	long intergenic non-protein coding RNA 400	ncRNA
125	chr1	50605479	50605788	+	0	NA	intron (NM_001324215, intron 1 of 5)	intron (NM_001324215, intron 1 of 5)	30345	NM_001324215	1996	Hs.213050	NM_021952	ENSG00000162374	ELAVL4	HUD|PNEM	ELAV like RNA binding protein 4	protein-coding
5967	chr9	84280793	84280941	+	0	NA	intron (NM_005077, intron 4 of 19)	intron (NM_005077, intron 4 of 19)	23583	NM_001303104	7088	Hs.197320	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	transducin like enhancer of split 1	protein-coding
44	chr1	16693333	16693481	+	0	NA	promoter-TSS (NM_001114600)	promoter-TSS (NM_001114600)	-118	NR_073501	26099	Hs.252967	NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
2152	chr16	1940616	1940644	+	0	NA	Intergenic	Intergenic	-6398	NR_033914	64735	Hs.662737	NR_033914	ENSG00000281219	LINC00254	C16orf32|NCRNA00254	long intergenic non-protein coding RNA 254	ncRNA
1687	chr14	37240282	37240521	+	0	NA	intron (NM_030631, intron 3 of 9)	intron (NM_030631, intron 3 of 9)	113628	NM_006194	5083	Hs.132576	NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding
5312	chr7	69345477	69345612	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	281639	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
1188	chr12	42378022	42378217	+	0	NA	Intergenic	Intergenic	160554	NM_001099650	283464	Hs.259347	NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
5016	chr6	111873454	111873536	+	0	NA	intron (NR_034109, intron 1 of 1)	intron (NR_034109, intron 1 of 1)	15068	NM_001164283	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
3142	chr2	90372647	90372673	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1260776	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
2008	chr15	44213155	44213371	+	0	NA	intron (NM_001322951, intron 1 of 14)	intron (NM_001322951, intron 1 of 14)	-42894	NR_003571	728758	Hs.658099	NR_003571		PIN4P1	-	peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1	pseudo
2862	chr19	49418860	49419088	+	0	NA	intron (NM_006184, intron 7 of 12)	AluJb|SINE|Alu	3174	NR_046633	100874085	Hs.569933	NR_046633	ENSG00000235191	NUCB1-AS1	-	NUCB1 antisense RNA 1	ncRNA
714	chr10	94560317	94560469	+	0	NA	Intergenic	Intergenic	-26195	NM_001013848	54536	Hs.655657	NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
1564	chr13	101297804	101298129	+	0	NA	intron (NM_032813, intron 6 of 18)	intron (NM_032813, intron 6 of 18)	29223	NM_032813	84899	Hs.190983	NM_032813	ENSG00000125247	TMTC4	-	transmembrane and tetratricopeptide repeat containing 4	protein-coding
6504	chrY	58996440	58996684	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-103841	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
4364	chr4	166381307	166381492	+	0	NA	intron (NM_001873, intron 1 of 8)	intron (NM_001873, intron 1 of 8)	74005	NR_030304	693163		NR_030304	ENSG00000207559	MIR578	MIRN578|hsa-mir-578	microRNA 578	ncRNA
2663	chr18	35877009	35877175	+	0	NA	Intergenic	MIR|SINE|MIR	639994	NR_036202	100422857		NR_036202	ENSG00000266530	MIR4318	-	microRNA 4318	ncRNA
5008	chr6	110884792	110884991	+	0	NA	Intergenic	Intergenic	-87047	NM_033125	85413	Hs.520319	NM_033125	ENSG00000004809	SLC22A16	CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 member 16	protein-coding
4690	chr6	20691913	20692187	+	0	NA	intron (NM_017774, intron 5 of 15)	Charlie7a|DNA|hAT-Charlie	157362	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
4631	chr6	1724564	1724644	+	0	NA	intron (NM_001500, intron 9 of 10)	intron (NM_001500, intron 9 of 10)	113923	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
397	chr1	202934035	202934071	+	0	NA	intron (NM_016243, intron 5 of 8)	intron (NM_016243, intron 5 of 8)	2351	NM_016243	51706	Hs.334832	NM_016243	ENSG00000159348	CYB5R1	B5R.1|B5R1|B5R2|NQO3A2|humb5R2	cytochrome b5 reductase 1	protein-coding
1096	chr12	5048768	5048863	+	0	NA	Intergenic	Intergenic	29742	NM_000217	3736	Hs.416139	NM_000217	ENSG00000111262	KCNA1	AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1	potassium voltage-gated channel subfamily A member 1	protein-coding
5368	chr7	106209542	106209780	+	0	NA	Intergenic	Intergenic	91973	NM_175884	168455	Hs.29692	NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71-like	protein-coding
3285	chr2	160373031	160373163	+	0	NA	intron (NM_001329857, intron 2 of 36)	intron (NM_001329857, intron 2 of 36)	-98708	NR_110588	643072	Hs.632541	NR_110587		LOC643072	-	uncharacterized LOC643072	ncRNA
2934	chr2	9150861	9151241	+	0	NA	Intergenic	Intergenic	-7172	NR_135604	129642	Hs.467634	NM_138799	ENSG00000143797	MBOAT2	LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2	membrane bound O-acyltransferase domain containing 2	protein-coding
1657	chr14	30334840	30335099	+	0	NA	intron (NM_001330069, intron 1 of 18)	intron (NM_001330069, intron 1 of 18)	61930	NM_002742	5587	Hs.508999	NM_002742	ENSG00000184304	PRKD1	PKC-MU|PKCM|PKD|PRKCM	protein kinase D1	protein-coding
6088	chr9_gl000199_random	33715	33741	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
5757	chr8	105285190	105285407	+	0	NA	Intergenic	LOR1-int|LTR|ERV1	49735	NM_001282882	9699	Hs.655271	NM_014677	ENSG00000176406	RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
3009	chr2	48960162	48960481	+	0	NA	intron (NM_000233, intron 1 of 10)	UCON29|DNA|PiggyBac?	22559	NM_000233	3973	Hs.468490	NM_000233	ENSG00000138039	LHCGR	HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5	luteinizing hormone/choriogonadotropin receptor	protein-coding
4432	chr5	26553265	26553275	+	0	NA	Intergenic	Intergenic	485419	NM_016279	1007	Hs.272212	NM_016279	ENSG00000113100	CDH9	-	cadherin 9	protein-coding
2185	chr16	18246555	18246834	+	0	NA	Intergenic	Intergenic	179825	NM_001282511	101059953	Hs.636569	NM_001282511	ENSG00000214940	NPIPA8	LCR16a9	nuclear pore complex interacting protein family member A8	protein-coding
2717	chr18	47047635	47047929	+	0	NA	Intergenic	Intergenic	-28847	NM_001199345	6139	Hs.293653	NM_000985	ENSG00000215472	RPL17	L17|PD-1|RPL23	ribosomal protein L17	protein-coding
1191	chr12	46604051	46604251	+	0	NA	intron (NM_001077484, intron 5 of 16)	intron (NM_001077484, intron 5 of 16)	56127	NM_001278389	81539	Hs.533770	NM_030674	ENSG00000111371	SLC38A1	ATA1|NAT2|SAT1|SNAT1	solute carrier family 38 member 1	protein-coding
5722	chr8	94531234	94531690	+	0	NA	intron (NR_033858, intron 7 of 10)	MLT1H|LTR|ERVL-MaLR	181199	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	ncRNA
823	chr11	21675541	21675666	+	0	NA	Intergenic	Intergenic	-539119	NM_213599	203859	Hs.154329	NM_213599	ENSG00000171714	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
6360	chrY	13452330	13452742	+	0	NA	Intergenic	(CACTC)n|Simple_repeat|Simple_repeat	1080853	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
6264	chrX	18094004	18094251	+	0	NA	intron (NR_133641, intron 1 of 4)	intron (NR_133641, intron 1 of 4)	28637	NR_133641	105373144		NR_133641	ENSG00000225882	LINC01456	-	long intergenic non-protein coding RNA 1456	ncRNA
4659	chr6	15061370	15061501	+	0	NA	Intergenic	Intergenic	-184771	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
4666	chr6	15949574	15949724	+	0	NA	Intergenic	Intergenic	-179668	NM_013262	29116	Hs.484738	NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
771	chr11	12824541	12824769	+	0	NA	intron (NM_021961, intron 3 of 12)	intron (NM_021961, intron 3 of 12)	128686	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
5697	chr8	85240532	85240649	+	0	NA	intron (NM_001100391, intron 1 of 8)	intron (NM_001100391, intron 1 of 8)	143490	NM_001100391	138046	Hs.121663	NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
401	chr1	203289954	203290436	+	0	NA	Intergenic	Intergenic	15531	NM_006763	7832	Hs.519162	NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
186	chr1	75759627	75759866	+	0	NA	intron (NM_001320285, intron 7 of 25)	intron (NM_001320285, intron 7 of 25)	159179	NM_001256114	431707	Hs.403934	NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
1797	chr14	68758723	68758888	+	0	NA	intron (NM_001321809, intron 8 of 11)	intron (NM_001321809, intron 8 of 11)	336699	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
1119	chr12	14538256	14538437	+	0	NA	intron (NM_181352, intron 1 of 14)	intron (NM_181352, intron 1 of 14)	348	NM_181352	55729	Hs.504856	NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
1914	chr14	89743514	89743713	+	0	NA	intron (NM_001085471, intron 4 of 6)	intron (NM_001085471, intron 4 of 6)	139841	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
3039	chr2	59610619	59610782	+	0	NA	Intergenic	Intergenic	165857	NR_110219	101927285	Hs.570209	NR_110219	ENSG00000222030	LINC01793	-	long intergenic non-protein coding RNA 1793	ncRNA
6495	chrY	58979283	58979294	+	0	NA	Intergenic	(CATTC)n|Simple_repeat|Simple_repeat	-121115	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
1705	chr14	42643532	42644201	+	0	NA	Intergenic	Intergenic	567807	NM_152447	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
3000	chr2	45486285	45486627	+	0	NA	Intergenic	Intergenic	-4376	NR_033831	400952	Hs.468368	NR_033831	ENSG00000205054	LINC01121	UNQ6975	long intergenic non-protein coding RNA 1121	ncRNA
6432	chrY	13842548	13842567	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	690832	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
6022	chr9	100864499	100864745	+	0	NA	intron (NM_014788, intron 2 of 5)	MER83C|LTR|ERV1	17013	NM_033219	9830	Hs.575631	NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
915	chr11	57568426	57568541	+	0	NA	intron (NM_001085461, intron 6 of 18)	intron (NM_001085461, intron 6 of 18)	39249	NM_001085467	1500	Hs.166011	NM_001331	ENSG00000198561	CTNND1	CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN)	catenin delta 1	protein-coding
6492	chrY	58973199	58973269	+	0	NA	Intergenic	Intergenic	-127169	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
2978	chr2	37962913	37963082	+	0	NA	Intergenic	Intergenic	-63319	NM_001270436	10602	Hs.369574	NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
5390	chr7	111597812	111597826	+	0	NA	intron (NM_014705, intron 8 of 51)	(TGAA)n|Simple_repeat|Simple_repeat	149258	NR_103806	100506413	Hs.677513	NR_103806	ENSG00000225572	DOCK4-AS1	-	DOCK4 antisense RNA 1	ncRNA
5260	chr7	61800720	61800746	+	0	NA	Intergenic	HSATII|Satellite|Satellite	963701	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
1586	chr13	107881447	107881697	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	302024	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
4037	chr3	177548176	177548300	+	0	NA	intron (NR_110826, intron 1 of 2)	L2c|LINE|L2	13585	NR_110826	102724550	Hs.570526	NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
1986	chr15	27516895	27517030	+	0	NA	intron (NM_033223, intron 3 of 9)	intron (NM_033223, intron 3 of 9)	-110496	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	GABRG3-AS1	-	GABRG3 antisense RNA 1	ncRNA
1456	chr13	36073783	36073933	+	0	NA	intron (NM_001204197, intron 1 of 17)	intron (NM_001204197, intron 1 of 17)	22972	NM_001204197	26960	Hs.491172	NM_015678	ENSG00000172915	NBEA	BCL8B|LYST2	neurobeachin	protein-coding
2606	chr18	21589614	21590053	+	0	NA	intron (NR_110796, intron 2 of 5)	intron (NR_110796, intron 2 of 5)	-4551	NM_001135993	125488	Hs.128576	NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
2060	chr15	61931867	61932022	+	0	NA	Intergenic	Intergenic	-410442	NM_134261	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
3561	chr20	35271296	35271792	+	0	NA	intron (NM_175077, intron 1 of 7)	L2c|LINE|L2	3075	NM_175077	84174	Hs.713578	NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
1551	chr13	100395124	100395434	+	0	NA	intron (NR_120421, intron 4 of 4)	intron (NR_120421, intron 4 of 4)	-14024	NR_120383	101927465	Hs.130690	NR_046525		CLYBL-AS1	-	CLYBL antisense RNA 1	ncRNA
3981	chr3	155222605	155222780	+	0	NA	intron (NM_001130961, intron 11 of 23)	intron (NM_001130961, intron 11 of 23)	171413	NM_001130961	23007	Hs.567423	NM_014996	ENSG00000114805	PLCH1	PLCL3	phospholipase C eta 1	protein-coding
4607	chr5	156341496	156341616	+	0	NA	Intergenic	Intergenic	48710	NM_138379	91937	Hs.334907	NM_138379	ENSG00000145850	TIMD4	SMUCKLER|TIM4	T-cell immunoglobulin and mucin domain containing 4	protein-coding
2904	chr2	4320631	4320742	+	0	NA	Intergenic	Intergenic	298935	NR_136322	105373394	Hs.742693	NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
5042	chr6	135572797	135572923	+	0	NA	Intergenic	Intergenic	12562	NR_030317	693126		NR_030317	ENSG00000207689	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA
3643	chr21	10843631	10844117	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	147069	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
5325	chr7	77314864	77315228	+	0	NA	intron (NR_134251, intron 1 of 3)	intron (NR_134251, intron 1 of 3)	10536	NR_134251	100505854	Hs.72451	NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator (non-protein coding)	ncRNA
2346	chr16	67816938	67816954	+	0	NA	intron (NM_001320238, intron 1 of 12)	intron (NM_001320238, intron 1 of 12)	23609	NM_020850	57610	Hs.368569	NM_020850	ENSG00000141084	RANBP10	-	RAN binding protein 10	protein-coding
2195	chr16	23218303	23218649	+	0	NA	intron (NM_001039, intron 6 of 12)	intron (NM_001039, intron 6 of 12)	24436	NM_001039	6340	Hs.371727	NM_001039	ENSG00000166828	SCNN1G	BESC3|ENaCg|ENaCgamma|PHA1|SCNEG	sodium channel epithelial 1 gamma subunit	protein-coding
561	chr10	38817224	38817651	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	100363	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
2112	chr15	76692594	76692685	+	0	NA	intron (NM_001145923, intron 27 of 31)	intron (NM_001145923, intron 27 of 31)	63574	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
6478	chrY	28784293	28784348	+	0	NA	Intergenic	Intergenic	909683	NR_002176	474148	Hs.511777	NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis-specific transcript, Y-linked 3B (non-protein coding)	ncRNA
5546	chr8	9013387	9013404	+	0	NA	Intergenic	Intergenic	-4243	NM_001201329	79660	Hs.458513	NM_024607	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1 regulatory subunit 3B	protein-coding
6329	chrX	129985117	129985399	+	0	NA	intron (NM_006375, intron 2 of 14)	intron (NM_006375, intron 2 of 14)	48648	NR_135655	105373338	Hs.642023	NR_135655		LOC105373338	-	uncharacterized LOC105373338	ncRNA
5202	chr7	50619936	50620136	+	0	NA	intron (NM_001082971, intron 1 of 14)	intron (NM_001082971, intron 1 of 14)	8732	NM_001242887	1644	Hs.359698	NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase	protein-coding
2555	chr18	110950	111188	+	0	NA	intron (NR_033770, intron 1 of 4)	BSR/Beta|Satellite|Satellite	1270	NR_107045	102466878		NR_107045	ENSG00000277521	MIR8078	hsa-mir-8078	microRNA 8078	ncRNA
2221	chr16	33867108	33867420	+	0	NA	Intergenic	AluYc|SINE|Alu	95239	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
3718	chr21	41048753	41048870	+	0	NA	Intergenic	AluSx|SINE|Alu	19564	NM_033170	10317	Hs.733638	NM_006057	ENSG00000183778	B3GALT5	B3GalT-V|B3GalTx|B3T5|GLCT5|beta-1,3-GalTase 5|beta-3-Gx-T5|beta3Gal-T5	beta-1,3-galactosyltransferase 5	protein-coding
2982	chr2	39923187	39923320	+	0	NA	intron (NM_152390, intron 1 of 3)	intron (NM_152390, intron 1 of 3)	30218	NM_152390	130733	Hs.40808	NM_152390	ENSG00000152154	TMEM178A	TMEM178	transmembrane protein 178A	protein-coding
1307	chr12	105171178	105171371	+	0	NA	Intergenic	L2c|LINE|L2	151198	NM_032148	84102	Hs.577463	NM_032148	ENSG00000136052	SLC41A2	SLC41A1-L1	solute carrier family 41 member 2	protein-coding
1812	chr14	70162812	70163141	+	0	NA	intron (NM_014734, intron 2 of 5)	MIR|SINE|MIR	-70828	NM_006925	6430	Hs.632326	NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
1769	chr14	62075600	62075872	+	0	NA	intron (NR_039985, intron 1 of 2)	intron (NR_039985, intron 1 of 2)	-38365	NR_110416	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
2475	chr17	45270169	45270344	+	0	NA	Intergenic	Intergenic	-3578	NM_001256	996	Hs.463295	NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
1875	chr14	82533338	82533561	+	0	NA	Intergenic	Intergenic	-444044	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
3834	chr3	16524780	16525126	+	0	NA	intron (NM_015150, intron 2 of 9)	intron (NM_015150, intron 2 of 9)	30269	NM_015150	23180	Hs.98910	NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
5087	chr6	168547733	168548016	+	0	NA	Intergenic	Intergenic	-65637	NR_110312	79981	Hs.266746	NM_024919	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
1673	chr14	36815389	36815509	+	0	NA	Intergenic	Intergenic	-25567	NM_001308110	51562	Hs.368647	NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
4084	chr4	8012260	8012394	+	0	NA	intron (NM_001130086, intron 11 of 17)	intron (NM_001130086, intron 11 of 17)	-5219	NR_029511	407052		NR_029511	ENSG00000207807	MIR95	MIRN95|hsa-mir-95|miR-95	microRNA 95	ncRNA
5491	chr7	141116598	141117099	+	0	NA	intron (NM_001195278, intron 2 of 3)	intron (NM_001195278, intron 2 of 3)	-134230	NM_018238	55750	Hs.743318	NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
4027	chr3	177000283	177000314	+	0	NA	Intergenic	MIRc|SINE|MIR	-11932	NR_047465	100820709	Hs.518409	NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
297	chr1	142967211	142967375	+	0	NA	Intergenic	(CACTC)n|Simple_repeat|Simple_repeat	234946	NR_110761	102723769	Hs.652926	NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
963	chr11	92419234	92419338	+	0	NA	intron (NM_001008781, intron 2 of 24)	intron (NM_001008781, intron 2 of 24)	229508	NR_135091	105369431	Hs.532389	NR_135091		LOC105369431	-	uncharacterized LOC105369431	ncRNA
5582	chr8	29657803	29657937	+	0	NA	Intergenic	Intergenic	28150	NR_125817	101929470	Hs.204721	NR_125817	ENSG00000248964	LOC101929470	-	uncharacterized LOC101929470	ncRNA
4959	chr6	97488485	97488655	+	0	NA	intron (NM_001286254, intron 1 of 8)	THE1D|LTR|ERVL-MaLR	30618	NM_001323261	114792	Hs.45056	NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch like family member 32	protein-coding
4931	chr6	90896249	90896333	+	0	NA	intron (NM_021813, intron 4 of 8)	Helitron2Na_Mam|RC|Helitron?	110336	NM_021813	60468	Hs.269764	NM_021813	ENSG00000112182	BACH2	BTBD25	BTB domain and CNC homolog 2	protein-coding
6340	chrX	149831508	149831527	+	0	NA	intron (NM_000252, intron 13 of 14)	intron (NM_000252, intron 13 of 14)	-30320	NM_001306144	8776	Hs.347187	NM_003828	ENSG00000063601	MTMR1	-	myotubularin related protein 1	protein-coding
6367	chrY	13457125	13457315	+	0	NA	Intergenic	Intergenic	1076169	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
2031	chr15	54129863	54129882	+	0	NA	Intergenic	L1MEe|LINE|L1	-74797	NR_102334	256764	Hs.122125	NM_182758	ENSG00000166415	WDR72	AI2A3	WD repeat domain 72	protein-coding
5627	chr8	59878647	59878866	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	153011	NM_014729	9760	Hs.491805	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
980	chr11	110822223	110822488	+	0	NA	Intergenic	L2b|LINE|L2	-238443	NM_001258418	57569	Hs.6136	NM_020809	ENSG00000137727	ARHGAP20	RARHOGAP	Rho GTPase activating protein 20	protein-coding
1596	chr13	108491378	108491570	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	-3668	NR_046848	100874375	Hs.653972	NR_046848		FAM155A-IT1	-	FAM155A intronic transcript 1	ncRNA
5957	chr9	80204322	80204634	+	0	NA	intron (NM_004297, intron 1 of 6)	intron (NM_004297, intron 1 of 6)	58754	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	G protein subunit alpha 14	protein-coding
5169	chr7	28880108	28880179	+	0	NA	Intergenic	Intergenic	117886	NM_014817	9865	Hs.744120	NM_014817	ENSG00000255690	TRIL	-	TLR4 interactor with leucine rich repeats	protein-coding
2697	chr18	43003422	43003586	+	0	NA	intron (NM_001242692, intron 1 of 20)	MIR3|SINE|MIR	83497	NR_110899	101927980	Hs.591058	NR_110899		SLC14A2-AS1	-	SLC14A2 antisense RNA 1	ncRNA
2097	chr15	74515679	74515798	+	0	NA	Intergenic	Intergenic	-12892	NM_025055	80125	Hs.383206	NM_025055	ENSG00000140481	CCDC33	CT61|HP11097	coiled-coil domain containing 33	protein-coding
6423	chrY	13826073	13826207	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	707249	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1651	chr14	28466194	28466497	+	0	NA	Intergenic	Intergenic	-363861	NR_130461	100422830		NR_130461	ENSG00000264657	MIR3171	-	microRNA 3171	ncRNA
5451	chr7	129991435	129992132	+	0	NA	intron (NM_001127441, intron 6 of 13)	intron (NM_001127441, intron 6 of 13)	7153	NM_080385	93979	Hs.567642	NM_080385	ENSG00000158525	CPA5	-	carboxypeptidase A5	protein-coding
1569	chr13	102528234	102528385	+	0	NA	intron (NM_001321945, intron 2 of 5)	intron (NM_001321945, intron 2 of 5)	40686	NM_004115	2259	Hs.508616	NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
6244	chrUn_gl000228	119035	119816	+	0	NA	intron (NR_137167, intron 2 of 5)	BSR/Beta|Satellite|Satellite	6820	NM_001306068	100288687	Hs.728749	NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
2542	chr17	79369072	79369385	+	0	NA	Intergenic	CpG	-4293	NM_001291324	57597	Hs.514580	NM_024696	ENSG00000266074	BAHCC1	BAHD2	BAH domain and coiled-coil containing 1	protein-coding
2123	chr15	92115458	92115605	+	0	NA	Intergenic	LTR53|LTR|ERVL	108962	NR_110106	101926928	Hs.638788	NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
6001	chr9	95715271	95715517	+	0	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	5793	NM_001083536	89846	Hs.411081	NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
6289	chrX	61682521	61682591	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	888662	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
530	chr10	24602011	24602304	+	0	NA	intron (NM_001098500, intron 3 of 18)	intron (NM_001098500, intron 3 of 18)	37543	NR_030334	693188		NR_030334	ENSG00000207930	MIR603	MIRN603|hsa-mir-603	microRNA 603	ncRNA
5594	chr8	33937346	33937645	+	0	NA	Intergenic	L2c|LINE|L2	-479871	NM_024025	78986	Hs.8719	NM_024025	ENSG00000133878	DUSP26	DSP-4|DUSP24|LDP-4|MKP-8|MKP8|NATA1|NEAP|SKRP3	dual specificity phosphatase 26	protein-coding
3701	chr21	38436374	38436602	+	0	NA	promoter-TSS (NR_131189)	promoter-TSS (NR_131189)	-122	NR_131189	105372795	Hs.528019	NR_131189		LOC105372795	-	uncharacterized LOC105372795	ncRNA
3805	chr22	42795456	42795756	+	0	NA	intron (NM_001318323, intron 2 of 4)	intron (NM_001318323, intron 2 of 4)	-30392	NR_120596	102723775	Hs.335413	NR_120595	ENSG00000229891	LINC01315	lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
3067	chr2	68149202	68149406	+	0	NA	Intergenic	Intergenic	-96610	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
2675	chr18	38730260	38730391	+	0	NA	Intergenic	Intergenic	370236	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA
470	chr1	221483850	221483908	+	0	NA	Intergenic	Intergenic	25759	NR_024236	400804	Hs.722626	NR_024236	ENSG00000234754	C1orf140	-	uncharacterized LOC400804	ncRNA
1524	chr13	95294257	95294663	+	0	NA	Intergenic	Intergenic	40356	NM_180989	160897	Hs.439363	NM_180989	ENSG00000152749	GPR180	ITR	G protein-coupled receptor 180	protein-coding
4142	chr4	49123475	49123504	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	134830	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
5142	chr7	14429227	14429418	+	0	NA	intron (NM_145695, intron 20 of 23)	intron (NM_145695, intron 20 of 23)	-398272	NM_001163148	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding
2360	chr16	73870245	73870424	+	0	NA	Intergenic	Intergenic	379086	NR_104657	101928035	Hs.39557	NR_104657	ENSG00000261404	LOC101928035	-	uncharacterized LOC101928035	ncRNA
1287	chr12	103634702	103634845	+	0	NA	intron (NR_103526, intron 10 of 10)	intron (NR_103526, intron 10 of 10)	89153	NR_126333	101929058	Hs.171310	NR_126333	ENSG00000257860	LOC101929058	-	uncharacterized LOC101929058	ncRNA
4650	chr6	6834522	6835291	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-211847	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
2403	chr17	1018775	1018962	+	0	NA	intron (NM_001322841, intron 2 of 22)	intron (NM_001322841, intron 2 of 22)	-6528	NM_001092	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
654	chr10	42817501	42817515	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	45985	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
2261	chr16	34022058	34022160	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-59606	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
283	chr1	121462606	121462663	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	201724	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
156	chr1	61477704	61477892	+	0	NA	Intergenic	Intergenic	-41350	NR_110618	100996570	Hs.46616	NR_110617	ENSG00000237928	NFIA-AS2	-	NFIA antisense RNA 2	ncRNA
6324	chrX	129906339	129906786	+	0	NA	intron (NM_182314, intron 3 of 15)	intron (NM_182314, intron 3 of 15)	-30048	NR_135655	105373338	Hs.642023	NR_135655		LOC105373338	-	uncharacterized LOC105373338	ncRNA
3993	chr3	170805417	170805557	+	0	NA	intron (NM_001161560, intron 22 of 31)	Charlie7|DNA|hAT-Charlie	19061	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
5860	chr9	8695120	8695255	+	0	NA	intron (NM_001040712, intron 1 of 29)	MLT1L|LTR|ERVL-MaLR	38759	NM_001171025	5789	Hs.446083	NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type D	protein-coding
4178	chr4	49153665	49153942	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	165144	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3414	chr2	229478652	229478785	+	0	NA	Intergenic	Intergenic	-432357	NM_030623	80309	Hs.436306	NM_030623	ENSG00000153820	SPHKAP	SKIP	SPHK1 interactor, AKAP domain containing	protein-coding
4278	chr4	98238698	98238919	+	0	NA	Intergenic	Intergenic	-49269	NR_102713	101410545	Hs.628520	NR_102713	ENSG00000251620	STPG2-AS1	-	STPG2 antisense RNA 1	ncRNA
1744	chr14	59272794	59273115	+	0	NA	Intergenic	Intergenic	-22052	NR_110547	102723742	Hs.232734	NR_110547	ENSG00000258583	LINC01500	-	long intergenic non-protein coding RNA 1500	ncRNA
864	chr11	51569440	51570329	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	54602	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
5138	chr7	13959768	13960213	+	0	NA	intron (NM_004956, intron 9 of 13)	intron (NM_004956, intron 9 of 13)	66149	NM_001163150	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding
2913	chr2	4676855	4677091	+	0	NA	non-coding (NR_034134, exon 5 of 5)	non-coding (NR_034134, exon 5 of 5)	26839	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
1170	chr12	34847134	34847352	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	672027	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
3382	chr2	217672447	217672652	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	52233	NM_003284	7141	Hs.3017	NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1	protein-coding
5985	chr9	92806957	92806966	+	0	NA	Intergenic	L1MB3|LINE|L1	-3180	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
1896	chr14	85435461	85435727	+	0	NA	Intergenic	L2b|LINE|L2	-418025	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
2895	chr2	4067840	4068060	+	0	NA	Intergenic	LTR18B|LTR|ERVL	46199	NR_136322	105373394	Hs.742693	NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
1042	chr11	126000086	126000402	+	0	NA	Intergenic	Intergenic	-67057	NM_001243597	50937	Hs.38034	NM_016952	ENSG00000064309	CDON	CDO|CDON1|HPE11|ORCAM	cell adhesion associated, oncogene regulated	protein-coding
1686	chr14	37211087	37211319	+	0	NA	intron (NM_030631, intron 3 of 9)	intron (NM_030631, intron 3 of 9)	84430	NM_006194	5083	Hs.132576	NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding
3874	chr3	97661238	97661588	+	0	NA	3' UTR (NM_032778, exon 10 of 10)	3' UTR (NM_032778, exon 10 of 10)	29882	NM_001261829	84864	Hs.570562	NM_032778	ENSG00000170854	RIOX2	JMJD10|MDIG|MINA|MINA53|NO52|ROX	ribosomal oxygenase 2	protein-coding
38	chr1	16280158	16280406	+	0	NA	intron (NM_003443, intron 2 of 15)	MIR|SINE|MIR	22345	NM_001324138	7709	Hs.433764	NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
196	chr1	85603137	85603271	+	0	NA	Intergenic	Intergenic	3727	NR_039619	100616481		NR_039619	ENSG00000266110	MIR4423	mir-4423	microRNA 4423	ncRNA
4817	chr6	51262936	51263525	+	0	NA	Intergenic	Intergenic	-223438	NR_125840	101927082	Hs.730296	NR_125840		LOC101927082	-	uncharacterized LOC101927082	ncRNA
4745	chr6	24284094	24284237	+	0	NA	intron (NM_016356, intron 6 of 9)	L2a|LINE|L2	-72966	NM_181337	353219	Hs.697888	NM_181337	ENSG00000146049	KAAG1	RU2AS	kidney associated antigen 1	protein-coding
4143	chr4	49123505	49123583	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	134885	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
1169	chr12	34847037	34847133	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	671869	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
5669	chr8	81064356	81064464	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	19025	NR_105037	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
3816	chr3	138966	139300	+	0	NA	Intergenic	Intergenic	73702	NR_110824	102723448	Hs.543290	NR_110824		LINC01986	-	long intergenic non-protein coding RNA 1986	ncRNA
118	chr1	48919711	48919922	+	0	NA	intron (NM_019073, intron 1 of 12)	intron (NM_019073, intron 1 of 12)	18064	NM_001286238	54558	Hs.538103	NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
5837	chr9	3732685	3732931	+	0	NA	Intergenic	Intergenic	64722	NR_121586	101929302	Hs.122828	NR_121586	ENSG00000232104	RFX3-AS1	CVAT7	RFX3 antisense RNA 1	ncRNA
1674	chr14	36815510	36815854	+	0	NA	Intergenic	Intergenic	-25800	NM_001308110	51562	Hs.368647	NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
4872	chr6	71548277	71548463	+	0	NA	intron (NM_001281440, intron 7 of 10)	L2a|LINE|L2	118418	NM_080742	135152	Hs.713609	NM_080742	ENSG00000112309	B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding
1065	chr11	128212290	128212359	+	0	NA	Intergenic	Intergenic	179881	NM_005238	2113	Hs.369438	NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
5862	chr9	8695436	8695558	+	0	NA	intron (NM_001040712, intron 1 of 29)	intron (NM_001040712, intron 1 of 29)	38449	NM_001171025	5789	Hs.446083	NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type D	protein-coding
1659	chr14	30969501	30969721	+	0	NA	Intergenic	Intergenic	-58718	NM_001308097	55632	Hs.509008	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
767	chr11	12777637	12777825	+	0	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	81762	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
6287	chrX	61682016	61682060	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	889180	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
4396	chr5	2797255	2797412	+	0	NA	Intergenic	Intergenic	45088	NR_122125	153571	Hs.148486	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
2173	chr16	12328271	12328307	+	0	NA	intron (NM_032167, intron 14 of 20)	L1MB7|LINE|L1	257698	NM_032167	92017	Hs.458401	NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
1020	chr11	115782281	115782956	+	0	NA	Intergenic	Intergenic	-151700	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
805	chr11	20091922	20091999	+	0	NA	intron (NM_001111019, intron 12 of 27)	intron (NM_001111019, intron 12 of 27)	-21111	NR_046672	100874014	Hs.557916	NR_046672	ENSG00000254453	NAV2-AS2	-	NAV2 antisense RNA 2	ncRNA
84	chr1	37859199	37859374	+	0	NA	Intergenic	Intergenic	80758	NR_038842	728431	Hs.380738	NR_038842	ENSG00000233621	LINC01137	-	long intergenic non-protein coding RNA 1137	ncRNA
6002	chr9	95715518	95715547	+	0	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	5931	NM_001083536	89846	Hs.411081	NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
5707	chr8	93848399	93848685	+	0	NA	Intergenic	Intergenic	-50254	NR_046114	441369	Hs.521683	NR_046114	ENSG00000248858	FLJ46284	-	uncharacterized LOC441369	ncRNA
4068	chr3	193715994	193716180	+	0	NA	intron (NR_033944, intron 1 of 2)	Charlie22a|DNA|hAT-Charlie	-4060	NR_027764	100128023	Hs.730112	NR_027764		DPPA2P3	-	developmental pluripotency associated 2 pseudogene 3	pseudo
437	chr1	209203832	209203916	+	0	NA	Intergenic	Intergenic	-294927	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
194	chr1	83568313	83568704	+	0	NA	Intergenic	Intergenic	-116617	NR_110633	101927498		NR_110632	ENSG00000236268	LINC01361	-	long intergenic non-protein coding RNA 1361	ncRNA
3503	chr20	20222480	20222559	+	0	NA	intron (NM_015585, intron 18 of 26)	intron (NM_015585, intron 18 of 26)	-126246	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
2749	chr18	55523450	55523532	+	0	NA	Intergenic	Intergenic	-53164	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
1768	chr14	62075475	62075599	+	0	NA	intron (NR_039985, intron 1 of 2)	intron (NR_039985, intron 1 of 2)	-38166	NR_110416	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
6501	chrY	58980867	58980894	+	0	NA	Intergenic	(CATTC)n|Simple_repeat|Simple_repeat	-119523	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
6429	chrY	13838617	13838619	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	694771	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4129	chr4	49093263	49094678	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	105311	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
2395	chr16	85591662	85591888	+	0	NA	Intergenic	Intergenic	-53254	NM_001134473	23199	Hs.461647	NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
1021	chr11	115782957	115783096	+	0	NA	Intergenic	Intergenic	-152108	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
6325	chrX	129906787	129907099	+	0	NA	intron (NM_182314, intron 3 of 15)	intron (NM_182314, intron 3 of 15)	-29667	NR_135655	105373338	Hs.642023	NR_135655		LOC105373338	-	uncharacterized LOC105373338	ncRNA
5094	chr6	169989665	169989806	+	0	NA	intron (NM_182552, intron 23 of 25)	intron (NM_182552, intron 23 of 25)	112424	NM_182552	253769	Hs.131903	NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
4937	chr6	91521346	91521705	+	0	NA	Intergenic	Intergenic	-224505	NM_003188	6885	Hs.594838	NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
4212	chr4	49654583	49658913	+	0	NA	Intergenic	Intergenic	668089	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
934	chr11	71073219	71073414	+	0	NA	Intergenic	(TGAG)n|Simple_repeat|Simple_repeat	61084	NR_038862	399923	Hs.128191	NM_001001680	ENSG00000172900	FLJ42102	-	uncharacterized LOC399923	ncRNA
1989	chr15	29500756	29500861	+	0	NA	intron (NM_015307, intron 3 of 10)	L1ME3A|LINE|L1	61212	NM_138704	56160	Hs.94011	NM_138704	ENSG00000185115	NSMCE3	HCA4|LICS|MAGEG1|MAGEL3|NDNL2|NSE3	NSE3 homolog, SMC5-SMC6 complex component	protein-coding
6451	chrY	13851932	13852104	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	681371	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5797	chr8	125792588	125792678	+	0	NA	Intergenic	Intergenic	-41594	NR_039806	100616221		NR_039806	ENSG00000283609	MIR4662A	-	microRNA 4662a	ncRNA
5990	chr9	92930553	92930770	+	0	NA	Intergenic	L1MB2|LINE|L1	-126880	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
4035	chr3	177520369	177520918	+	0	NA	Intergenic	Intergenic	-14010	NR_110826	102724550	Hs.570526	NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
3537	chr20	29818143	29818153	+	0	NA	Intergenic	Intergenic	-27319	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
4821	chr6	52041619	52041779	+	0	NA	Intergenic	Intergenic	-9486	NM_002190	3605	Hs.41724	NM_002190	ENSG00000112115	IL17A	CTLA-8|CTLA8|IL-17|IL-17A|IL17	interleukin 17A	protein-coding
948	chr11	73662674	73662935	+	0	NA	intron (NM_153614, intron 1 of 7)	AluSp|SINE|Alu	1440	NM_153614	374407	Hs.567888	NM_153614	ENSG00000187726	DNAJB13	CILD34|RSPH16A|TSARG5|TSARG6	DnaJ heat shock protein family (Hsp40) member B13	protein-coding
6119	chrUn_gl000216	844	844	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5955	chr9	78790206	78790218	+	0	NA	intron (NM_006200, intron 14 of 20)	(GAATG)n|Simple_repeat|Simple_repeat	219232	NM_018339	55312	Hs.37558	NM_018339	ENSG00000135002	RFK	RIFK	riboflavin kinase	protein-coding
4120	chr4	40335899	40335959	+	0	NA	Intergenic	MIR3|SINE|MIR	-1417	NM_017581	55584	Hs.272278	NM_017581	ENSG00000174343	CHRNA9	HSA243342|NACHRA9	cholinergic receptor nicotinic alpha 9 subunit	protein-coding
2160	chr16	7506219	7506284	+	0	NA	intron (NM_145892, intron 1 of 12)	intron (NM_145892, intron 1 of 12)	123500	NM_145893	54715	Hs.459842	NM_018723	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog 1	protein-coding
5228	chr7	61079947	61080226	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1684348	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
3785	chr22	30591953	30592008	+	0	NA	Intergenic	Intergenic	50860	NM_001257135	3976	Hs.2250	NM_002309	ENSG00000128342	LIF	CDF|DIA|HILDA|MLPLI	leukemia inhibitory factor	protein-coding
2450	chr17	28703314	28703662	+	0	NA	Intergenic	Intergenic	-2454	NM_001304	1362	Hs.446079	NM_001304	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
1398	chr12	125565803	125566019	+	0	NA	intron (NM_023928, intron 3 of 17)	intron (NM_023928, intron 3 of 17)	15998	NM_001319839	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
3986	chr3	156344226	156344420	+	0	NA	Intergenic	LTR18A|LTR|ERVL	-47882	NM_015508	25976	Hs.744050	NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
226	chr1	105534487	105534535	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	627046	NR_125954	101928476	Hs.563856	NR_125954	ENSG00000230768	LINC01676	-	long intergenic non-protein coding RNA 1676	ncRNA
5677	chr8	81639775	81640038	+	0	NA	intron (NM_001033723, intron 2 of 8)	intron (NM_001033723, intron 2 of 8)	147110	NM_001033723	619279	Hs.434957	NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
4296	chr4	114031511	114031715	+	0	NA	intron (NM_001148, intron 1 of 45)	intron (NM_001148, intron 1 of 45)	3594	NR_031641	100302188		NR_031641	ENSG00000283193	MIR1243	MIRN1243|hsa-mir-1243	microRNA 1243	ncRNA
4982	chr6	107150530	107150728	+	0	NA	Intergenic	Intergenic	-72263	NM_001318746	84816	Hs.155839	NM_032730	ENSG00000130347	RTN4IP1	NIMP|OPA10	reticulon 4 interacting protein 1	protein-coding
527	chr10	23201132	23201313	+	0	NA	Intergenic	Intergenic	-15731	NM_001282746	219681	Hs.659807	NM_173081	ENSG00000165309	ARMC3	CT81|KU-CT-1	armadillo repeat containing 3	protein-coding
1430	chr13	22508164	22508405	+	0	NA	Intergenic	Intergenic	-55985	NR_047040	100874182	Hs.148951	NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
1145	chr12	32536336	32536530	+	0	NA	Intergenic	Intergenic	-102473	NM_001330374	121512	Hs.117835	NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
1870	chr14	80072256	80072361	+	0	NA	intron (NM_001105250, intron 2 of 6)	intron (NM_001105250, intron 2 of 6)	326626	NR_073546	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
5214	chr7	57554258	57554328	+	0	NA	Intergenic	HSATII|Satellite|Satellite	44410	NM_001159279	441234	Hs.533121	NM_001159279	ENSG00000182111	ZNF716	-	zinc finger protein 716	protein-coding
3229	chr2	123428656	123428785	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	915599	NR_048557	7247	Hs.75066	NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
2466	chr17	36571559	36571843	+	0	NA	Intergenic	Intergenic	-13019	NM_001199417	57636	Hs.374446	NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
62	chr1	31329259	31329358	+	0	NA	Intergenic	Intergenic	52172	NM_014654	9672	Hs.158287	NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
833	chr11	22771450	22771750	+	0	NA	intron (NM_001143830, intron 6 of 7)	intron (NM_001143830, intron 6 of 7)	75281	NM_005256	2620	Hs.711297	NM_005256	ENSG00000148935	GAS2	-	growth arrest specific 2	protein-coding
5112	chr7	3307860	3307919	+	0	NA	Intergenic	Intergenic	-33191	NM_152744	221935	Hs.653013	NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
4794	chr6	41256129	41256450	+	0	NA	Intergenic	Intergenic	-1806	NR_136332	54210	Hs.283022	NM_018643	ENSG00000124731	TREM1	CD354|TREM-1	triggering receptor expressed on myeloid cells 1	protein-coding
4513	chr5	115830582	115830844	+	0	NA	intron (NM_001300780, intron 6 of 19)	intron (NM_001300780, intron 6 of 19)	47519	NR_109879	101927233	Hs.732850	NR_109879	ENSG00000248445	SEMA6A-AS1	CTB-118N6.3	SEMA6A antisense RNA 1	ncRNA
2743	chr18	54756177	54756457	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-16967	NR_048536	100885779	Hs.742426	NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA
4588	chr5	150850006	150850219	+	0	NA	intron (NM_001308151, intron 8 of 8)	MER117|DNA|hAT-Charlie	22955	NM_078483	206358	Hs.269004	NM_078483	ENSG00000123643	SLC36A1	Dct1|LYAAT1|PAT1|TRAMD3	solute carrier family 36 member 1	protein-coding
3276	chr2	159111864	159112122	+	0	NA	intron (NM_138803, intron 9 of 13)	intron (NM_138803, intron 9 of 13)	88831	NR_038850	554201	Hs.570262	NR_038850	ENSG00000227480	CCDC148-AS1	-	CCDC148 antisense RNA 1	ncRNA
3649	chr21	10849816	10849904	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	141083	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
548	chr10	38778061	38778175	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	61044	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
6505	chrY	58996685	58996798	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-103662	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
3450	chr2	238635404	238635598	+	0	NA	intron (NM_001137550, intron 7 of 23)	intron (NM_001137550, intron 7 of 23)	34694	NM_001137553	9208	Hs.471779	NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
2575	chr18	9899219	9899488	+	0	NA	Intergenic	Intergenic	13630	NM_001098529	84203	Hs.98712	NM_032243	ENSG00000168454	TXNDC2	SPTRX|SPTRX1	thioredoxin domain containing 2	protein-coding
4641	chr6	3919829	3919975	+	0	NA	Intergenic	Tigger3|DNA|TcMar-Tigger	70302	NM_012135	26240	Hs.140944	NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50 member B	protein-coding
3697	chr21	38432456	38432683	+	0	NA	Intergenic	Intergenic	3797	NR_131189	105372795	Hs.528019	NR_131189		LOC105372795	-	uncharacterized LOC105372795	ncRNA
1110	chr12	12009217	12009264	+	0	NA	intron (NM_001987, intron 4 of 7)	MamSINE1|SINE|tRNA	206452	NM_001987	2120	Hs.504765	NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant 6	protein-coding
3466	chr20	9117844	9118050	+	0	NA	intron (NM_001172646, intron 1 of 37)	intron (NM_001172646, intron 1 of 37)	68246	NM_001172646	5332	Hs.472101	NM_000933	ENSG00000101333	PLCB4	ARCND2|PI-PLC	phospholipase C beta 4	protein-coding
2204	chr16	26676755	26676915	+	0	NA	Intergenic	Intergenic	-401384	NM_001145545	162083	Hs.120831	NM_182831	ENSG00000234186	C16orf82	TNT	chromosome 16 open reading frame 82	protein-coding
1999	chr15	39654827	39654945	+	0	NA	Intergenic	Intergenic	112016	NM_001302797	400360	Hs.376109	NM_207445		C15orf54	-	chromosome 15 open reading frame 54	ncRNA
6494	chrY	58979207	58979282	+	0	NA	Intergenic	(CATTC)n|Simple_repeat|Simple_repeat	-121159	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
3632	chr21	10833502	10833510	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	157437	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
783	chr11	13904816	13905109	+	0	NA	Intergenic	MIRb|SINE|MIR	41448	NR_135052	101928132	Hs.568970	NR_135052	ENSG00000254438	LOC101928132	-	uncharacterized LOC101928132	ncRNA
6439	chrY	13843681	13843801	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	689648	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
6030	chr9	110582531	110582721	+	0	NA	Intergenic	Intergenic	-330625	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel like factor 4	protein-coding
1357	chr12	116770728	116770802	+	0	NA	Intergenic	AluSx|SINE|Alu	-55774	NM_015335	23389	Hs.603766	NM_015335	ENSG00000123066	MED13L	MRFACD|PROSIT240|THRAP2|TRAP240L	mediator complex subunit 13 like	protein-coding
5969	chr9	85538408	85538866	+	0	NA	Intergenic	Intergenic	139406	NM_152573	158158	Hs.129136	NM_152573	ENSG00000165105	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
6082	chr9_gl000199_random	30719	30941	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
1152	chr12	34841381	34841389	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	666169	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
4684	chr6	19632990	19633229	+	0	NA	Intergenic	Intergenic	171881	NR_134649	100506885	Hs.346489	NR_134649	ENSG00000228412	LOC100506885	-	uncharacterized LOC100506885	ncRNA
789	chr11	15737272	15737289	+	0	NA	Intergenic	Intergenic	71849	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
49	chr1	16886053	16886062	+	0	NA	Intergenic	L1MEc|LINE|L1	10648	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
6228	chrUn_gl000225	130172	130365	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
5808	chr8	135253662	135253823	+	0	NA	Intergenic	MIRb|SINE|MIR	355003	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
2046	chr15	60650918	60651052	+	0	NA	intron (NM_001002857, intron 6 of 13)	intron (NM_001002857, intron 6 of 13)	39200	NM_004039	302	Hs.511605	NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
2967	chr2	33272914	33273008	+	0	NA	intron (NM_206943, intron 3 of 33)	L1PA7|LINE|L1	-86703	NM_001166264	4052	Hs.619315	NM_000627	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
4860	chr6	61913282	61913337	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-370699	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
2117	chr15	92009093	92009314	+	0	NA	intron (NR_110106, intron 1 of 3)	L2b|LINE|L2	2634	NR_110106	101926928	Hs.638788	NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
6302	chrX	61730710	61730976	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	840375	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
4398	chr5	2797683	2797777	+	0	NA	Intergenic	Intergenic	45485	NR_122125	153571	Hs.148486	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
6262	chrX	18093485	18093731	+	0	NA	intron (NR_133641, intron 1 of 4)	intron (NR_133641, intron 1 of 4)	29156	NR_133641	105373144		NR_133641	ENSG00000225882	LINC01456	-	long intergenic non-protein coding RNA 1456	ncRNA
715	chr10	94560470	94560544	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-26081	NM_001013848	54536	Hs.655657	NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
1934	chr14	91765988	91766131	+	0	NA	intron (NM_001080414, intron 21 of 29)	intron (NM_001080414, intron 21 of 29)	-45835	NM_003485	8111	Hs.8882	NM_003485	ENSG00000119714	GPR68	AI2A6|GPR12A|OGR1	G protein-coupled receptor 68	protein-coding
3615	chr21	10805304	10805452	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	185565	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2201	chr16	23291271	23291565	+	0	NA	Intergenic	Intergenic	-22173	NM_000336	6338	Hs.414614	NM_000336	ENSG00000168447	SCNN1B	BESC1|ENaCb|ENaCbeta|SCNEB	sodium channel epithelial 1 beta subunit	protein-coding
1916	chr14	89743910	89744073	+	0	NA	intron (NM_001085471, intron 4 of 6)	intron (NM_001085471, intron 4 of 6)	139463	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
4232	chr4	68264224	68266804	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	22204	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
23	chr1	7278485	7278838	+	0	NA	intron (NM_015215, intron 4 of 22)	L1MC4|LINE|L1	433277	NR_038934	23261	Hs.397705	NM_015215	ENSG00000171735	CAMTA1	CANPMR	calmodulin binding transcription activator 1	protein-coding
1722	chr14	51974594	51974626	+	0	NA	intron (NM_001042481, intron 1 of 14)	intron (NM_001042481, intron 1 of 14)	18771	NM_001042481	122786	Hs.434914	NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
364	chr1	182144543	182144627	+	0	NA	Intergenic	Intergenic	-113738	NM_001009992	127665	Hs.684328	NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
3931	chr3	123477537	123477743	+	0	NA	intron (NM_053027, intron 4 of 32)	intron (NM_053027, intron 4 of 32)	69149	NR_046629	100873940	Hs.667316	NR_046629	ENSG00000250174	MYLK-AS2	-	MYLK antisense RNA 2	ncRNA
3069	chr2	68181017	68181127	+	0	NA	Intergenic	Intergenic	109087	NM_173177	10438	Hs.602900	NM_006333	ENSG00000197223	C1D	LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
4568	chr5	138483173	138483346	+	0	NA	intron (NM_022464, intron 1 of 9)	intron (NM_022464, intron 1 of 9)	50806	NM_022464	64374	Hs.483521	NM_022464	ENSG00000120725	SIL1	BAP|MSS|ULG5	SIL1 nucleotide exchange factor	protein-coding
950	chr11	73663205	73663473	+	0	NA	intron (NM_153614, intron 1 of 7)	intron (NM_153614, intron 1 of 7)	1975	NM_153614	374407	Hs.567888	NM_153614	ENSG00000187726	DNAJB13	CILD34|RSPH16A|TSARG5|TSARG6	DnaJ heat shock protein family (Hsp40) member B13	protein-coding
2680	chr18	40255616	40255830	+	0	NA	intron (NR_046174, intron 7 of 9)	intron (NR_046174, intron 7 of 9)	439934	NM_001272077	6014	Hs.464985	NM_002930	ENSG00000152214	RIT2	RIBA|RIN|ROC2	Ras like without CAAX 2	protein-coding
2957	chr2	18082633	18082895	+	0	NA	intron (NM_002252, intron 1 of 2)	L2c|LINE|L2	22840	NM_002252	3790	Hs.414489	NM_002252	ENSG00000170745	KCNS3	KV9.3	potassium voltage-gated channel modifier subfamily S member 3	protein-coding
1445	chr13	32562949	32563292	+	0	NA	Intergenic	L1MA4|LINE|L1	-42317	NM_023037	10129	Hs.507669	NM_023037	ENSG00000073910	FRY	13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1	FRY microtubule binding protein	protein-coding
1678	chr14	36893463	36893605	+	0	NA	Intergenic	Intergenic	89456	NR_138598	253970	Hs.509165	NM_001101341	ENSG00000229415	SFTA3	NANCI|SFTPH|SP-H	surfactant associated 3	protein-coding
1845	chr14	76952963	76953033	+	0	NA	intron (NM_004452, intron 7 of 10)	intron (NM_004452, intron 7 of 10)	115308	NM_004452	2103	Hs.435845	NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen related receptor beta	protein-coding
1025	chr11	115904985	115905211	+	0	NA	Intergenic	Intergenic	-274180	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
4692	chr6	20718146	20718298	+	0	NA	intron (NM_017774, intron 5 of 15)	intron (NM_017774, intron 5 of 15)	183534	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
3429	chr2	234898418	234898628	+	0	NA	intron (NM_024080, intron 21 of 25)	intron (NM_024080, intron 21 of 25)	-60823	NM_006944	6694	Hs.444488	NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
3580	chr20	58516111	58516571	+	0	NA	promoter-TSS (NM_006242)	promoter-TSS (NM_006242)	897	NM_001190827	63939	Hs.54973	NM_022106	ENSG00000196227	FAM217B	C20orf177|dJ551D2.5	family with sequence similarity 217 member B	protein-coding
4375	chr4	184644802	184644929	+	0	NA	Intergenic	Intergenic	64445	NM_199053	60684	Hs.443240	NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY|LGMD2S	trafficking protein particle complex 11	protein-coding
3073	chr2	68925791	68925954	+	0	NA	Intergenic	Intergenic	-36041	NM_001007231	9938	Hs.531807	NM_014882	ENSG00000163219	ARHGAP25	HEL-S-308|KAIA0053	Rho GTPase activating protein 25	protein-coding
1992	chr15	31209187	31209300	+	0	NA	intron (NM_014967, intron 5 of 14)	L2b|LINE|L2	13167	NM_014967	22909	Hs.584863	NM_014967	ENSG00000198690	FAN1	KIAA1018|KMIN|MTMR15|hFAN1	FANCD2 and FANCI associated nuclease 1	protein-coding
2478	chr17	46271289	46271604	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-37573	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
1466	chr13	40113344	40113392	+	0	NA	intron (NM_005780, intron 2 of 3)	intron (NM_005780, intron 2 of 3)	63988	NM_005780	10186	Hs.507798	NM_005780	ENSG00000183722	LHFP	-	lipoma HMGIC fusion partner	protein-coding
4248	chr4	77561368	77561593	+	0	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	64776	NR_039655	100616254		NR_039655	ENSG00000283682	MIR548AH	-	microRNA 548ah	ncRNA
2340	chr16	67397394	67397443	+	0	NA	intron (NM_018296, intron 5 of 13)	MIRc|SINE|MIR	16160	NM_001161575	55282	Hs.125139	NM_018296	ENSG00000159708	LRRC36	RORBP70|XLHSRF2	leucine rich repeat containing 36	protein-coding
4534	chr5	124820781	124821271	+	0	NA	Intergenic	Intergenic	-7928	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
778	chr11	13181790	13182040	+	0	NA	Intergenic	Intergenic	-117359	NM_001030273	406	Hs.65734	NM_001178	ENSG00000133794	ARNTL	BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	aryl hydrocarbon receptor nuclear translocator like	protein-coding
3555	chr20	30161606	30161923	+	0	NA	promoter-TSS (NR_046853)	promoter-TSS (NR_046853)	-698	NR_046853	100874042	Hs.373741	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
720	chr10	98869278	98869627	+	0	NA	intron (NM_003061, intron 4 of 36)	intron (NM_003061, intron 4 of 36)	6939	NR_038330	100505540	Hs.568878	NR_038330	ENSG00000234855	SLIT1-AS1	-	SLIT1 antisense RNA 1	ncRNA
5166	chr7	28612200	28612224	+	0	NA	intron (NM_182899, intron 4 of 9)	intron (NM_182899, intron 4 of 9)	-113386	NM_001011666	9586	Hs.437075	NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5	cAMP responsive element binding protein 5	protein-coding
4430	chr5	22542219	22542296	+	0	NA	intron (NM_004061, intron 1 of 14)	intron (NM_004061, intron 1 of 14)	311474	NM_004061	1010	Hs.113684	NM_004061	ENSG00000154162	CDH12	CDHB	cadherin 12	protein-coding
2449	chr17	25618432	25618510	+	0	NA	Intergenic	Intergenic	2551	NR_039748	100616277		NR_039748	ENSG00000263583	MIR4522	-	microRNA 4522	ncRNA
460	chr1	218477867	218478142	+	0	NA	intron (NM_016052, intron 2 of 4)	intron (NM_016052, intron 2 of 4)	19375	NM_016052	51018	Hs.660109	NM_016052	ENSG00000067533	RRP15	CGI-115|KIAA0507	ribosomal RNA processing 15 homolog	protein-coding
4627	chr5	177485599	177485899	+	0	NA	Intergenic	Intergenic	51782	NR_038353	653316	Hs.652193	NM_001079527	ENSG00000204677	FAM153C	NY-REN-7-like	family with sequence similarity 153, member C, pseudogene	pseudo
244	chr1	110825138	110825541	+	0	NA	Intergenic	Intergenic	56454	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	ncRNA
5072	chr6	156939684	156939964	+	0	NA	Intergenic	Intergenic	-159165	NM_001346813	57492	Hs.291587	NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT-rich interaction domain 1B	protein-coding
4107	chr4	23820063	23820100	+	0	NA	intron (NM_013261, intron 7 of 12)	intron (NM_013261, intron 7 of 12)	62834	NM_001330753	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
6297	chrX	61721830	61722583	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	849012	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
4168	chr4	49142276	49143269	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	154113	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
4838	chr6	53792418	53792634	+	0	NA	Intergenic	AluSz|SINE|Alu	-2254	NR_125842	101927189	Hs.453592	NR_125842	ENSG00000236740	LOC101927189	-	uncharacterized LOC101927189	ncRNA
3744	chr22	18688438	18688620	+	0	NA	intron (NR_136570, intron 1 of 11)	HSATI|Satellite|Satellite	101	NR_136570	100996415	Hs.645542	NR_136570		LOC100996415	-	uncharacterized LOC100996415	ncRNA
3220	chr2	112940096	112940316	+	0	NA	intron (NM_153214, intron 5 of 7)	intron (NM_153214, intron 5 of 7)	44244	NM_153214	129804	Hs.437696	NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
6411	chrY	13810968	13811035	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	722388	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
2811	chr19	7157589	7157602	+	0	NA	intron (NM_001079817, intron 9 of 20)	intron (NM_001079817, intron 9 of 20)	88124	NM_001044388	79230	Hs.591380	NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
3854	chr3	53991223	53991322	+	0	NA	Intergenic	AluJb|SINE|Alu	-65230	NM_021237	58515	Hs.58471	NM_021237	ENSG00000113811	SELENOK	HSPC030|HSPC297|SELK	selenoprotein K	protein-coding
5149	chr7	25817599	25817932	+	0	NA	Intergenic	Intergenic	171841	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
6348	chrX	152372149	152372347	+	0	NA	Intergenic	Intergenic	33989	NM_032882	84968	Hs.533301	NM_032882	ENSG00000235961	PNMA6A	MA6|PNMA6|PNMA6C	paraneoplastic Ma antigen family member 6A	protein-coding
4901	chr6	83235958	83236148	+	0	NA	Intergenic	Intergenic	162092	NM_001166392	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
1607	chr13	111151994	111152120	+	0	NA	intron (NM_001846, intron 40 of 47)	intron (NM_001846, intron 40 of 47)	8469	NR_046583	100874203	Hs.508716	NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	ncRNA
1386	chr12	123542815	123543030	+	0	NA	intron (NM_020845, intron 1 of 24)	L2c|LINE|L2	-23009	NR_038290	100507091	Hs.683912	NR_038290	ENSG00000251497	LOC100507091	-	uncharacterized LOC100507091	ncRNA
1536	chr13	98252796	98252814	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	166330	NM_021033	5911	Hs.508480	NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
3893	chr3	105246817	105247094	+	0	NA	intron (NM_001243280, intron 3 of 14)	intron (NM_001243280, intron 3 of 14)	161398	NM_001243280	214	Hs.591293	NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
2617	chr18	25625576	25625628	+	0	NA	intron (NM_001792, intron 2 of 15)	L2c|LINE|L2	-9053	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
4187	chr4	49633643	49633938	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	645131	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
452	chr1	212740572	212740767	+	0	NA	intron (NM_001030287, intron 1 of 3)	intron (NM_001030287, intron 1 of 3)	1993	NM_001030287	467	Hs.460	NM_001674	ENSG00000162772	ATF3	-	activating transcription factor 3	protein-coding
579	chr10	39076664	39076778	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	86994	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
295	chr1	142966947	142967016	+	0	NA	Intergenic	L1P1|LINE|L1	235258	NR_110761	102723769	Hs.652926	NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
3956	chr3	129838818	129838970	+	0	NA	Intergenic	Intergenic	-8618	NR_024252	729375	Hs.123633	NR_024252		FAM86HP	-	family with sequence similarity 86, member A pseudogene	pseudo
1618	chr13	112768022	112768874	+	0	NA	Intergenic	Intergenic	7015	NR_120394	100505996	Hs.654853	NR_120392	ENSG00000224243	LINC00403	-	long intergenic non-protein coding RNA 403	ncRNA
4701	chr6	20893769	20893835	+	0	NA	intron (NM_017774, intron 9 of 15)	intron (NM_017774, intron 9 of 15)	359114	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
3301	chr2	166682041	166682105	+	0	NA	Intergenic	HAL1|LINE|L1	-31270	NM_004482	2591	Hs.170986	NM_004482	ENSG00000115339	GALNT3	GalNAc-T3|HFTC|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
3136	chr2	89880056	89880093	+	0	NA	Intergenic	Intergenic	768190	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
77	chr1	35941618	35941841	+	0	NA	intron (NM_024874, intron 4 of 20)	intron (NM_024874, intron 4 of 20)	81308	NM_024874	79932	Hs.456507	NM_024874	ENSG00000142687	KIAA0319L	AAVR	KIAA0319 like	protein-coding
541	chr10	38776692	38776721	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	59632	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
4317	chr4	139818940	139818957	+	0	NA	intron (NR_133945, intron 2 of 2)	MER5A|DNA|hAT-Charlie	114852	NR_133945	105377448	Hs.200280	NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
3890	chr3	105176663	105176945	+	0	NA	intron (NM_001243280, intron 1 of 14)	intron (NM_001243280, intron 1 of 14)	91247	NM_001243280	214	Hs.591293	NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
5863	chr9	8887948	8887958	+	0	NA	intron (NM_002839, intron 11 of 45)	intron (NM_002839, intron 11 of 45)	29935	NR_121599	101929407	Hs.649971	NR_121599		PTPRD-AS1	-	PTPRD antisense RNA 1	ncRNA
5061	chr6	149492801	149493018	+	0	NA	Intergenic	Intergenic	-46151	NM_001292035	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
897	chr11	51587473	51587604	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	72256	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
1628	chr13	114915319	114915503	+	0	NA	Intergenic	Intergenic	-17313	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
6011	chr9	97913472	97913675	+	0	NA	intron (NM_001243743, intron 6 of 14)	L2a|LINE|L2	-65197	NR_036109	100422842		NR_036109	ENSG00000207617	MIR3074	mir-3074	microRNA 3074	ncRNA
3219	chr2	112939929	112940095	+	0	NA	intron (NM_153214, intron 5 of 7)	intron (NM_153214, intron 5 of 7)	44050	NM_153214	129804	Hs.437696	NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
6042	chr9	114736539	114736567	+	0	NA	Intergenic	Intergenic	42173	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
3911	chr3	111762087	111762187	+	0	NA	intron (NM_001042575, intron 2 of 15)	Tigger3a|DNA|TcMar-Tigger	3672	NR_026734	344805	Hs.435490	NM_001042575	ENSG00000176040	TMPRSS7	-	transmembrane protease, serine 7	protein-coding
3871	chr3	93801672	93801838	+	0	NA	intron (NM_022072, intron 2 of 5)	intron (NM_022072, intron 2 of 5)	-19688	NM_001195643	200895	Hs.718516	NM_176815	ENSG00000178700	DHFR2	DHFRL1|DHFRP4	dihydrofolate reductase 2	protein-coding
3671	chr21	36250683	36250737	+	0	NA	intron (NM_001001890, intron 2 of 5)	intron (NM_001001890, intron 2 of 5)	10277	NM_001122607	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
237	chr1	109153071	109153110	+	0	NA	intron (NM_001010883, intron 3 of 10)	L2a|LINE|L2	50119	NM_001010883	284611	Hs.200230	NM_001010883	ENSG00000162636	FAM102B	SYM-3B	family with sequence similarity 102 member B	protein-coding
2584	chr18	18510896	18510912	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	180908	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
6473	chrY	13869316	13869543	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	663960	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
2722	chr18	47338266	47338386	+	0	NA	intron (NM_006111, intron 1 of 9)	Charlie24|DNA|hAT-Charlie	1925	NM_006111	10449	Hs.200136	NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
2371	chr16	78218603	78218950	+	0	NA	intron (NM_001291997, intron 4 of 7)	MLT1I|LTR|ERVL-MaLR	85466	NM_001291997	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
2519	chr17	65581173	65581371	+	0	NA	intron (NM_181671, intron 5 of 9)	L2a|LINE|L2	-113571	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
5200	chr7	45881999	45882154	+	0	NA	Intergenic	Intergenic	-45883	NM_000596	3484	Hs.642938	NM_000596	ENSG00000146678	IGFBP1	AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1	insulin like growth factor binding protein 1	protein-coding
2923	chr2	5264774	5265029	+	0	NA	Intergenic	L2a|LINE|L2	-561089	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
2610	chr18	25293335	25293460	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	323152	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
416	chr1	205889700	205890009	+	0	NA	intron (NM_134325, intron 17 of 21)	AluSg7|SINE|Alu	22734	NM_134325	115019	Hs.164073	NM_052934	ENSG00000174502	SLC26A9	-	solute carrier family 26 member 9	protein-coding
2950	chr2	11680210	11680501	+	0	NA	TTS (NR_039627)	TTS (NR_039627)	275	NM_148903	9687	Hs.467733	NM_014668	ENSG00000196208	GREB1	-	growth regulation by estrogen in breast cancer 1	protein-coding
4154	chr4	49132612	49133093	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	144193	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3212	chr2	109815711	109815782	+	0	NA	intron (NM_001099289, intron 1 of 9)	AluY|SINE|Alu	-57702	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
4407	chr5	6453518	6453653	+	0	NA	intron (NM_001145161, intron 1 of 1)	intron (NM_001145161, intron 1 of 1)	4849	NM_001145161	134111	Hs.126856	NM_001145161	ENSG00000215218	UBE2QL1	-	ubiquitin conjugating enzyme E2 Q family like 1	protein-coding
914	chr11	57567958	57568425	+	0	NA	intron (NM_001085461, intron 6 of 18)	intron (NM_001085461, intron 6 of 18)	38957	NM_001085467	1500	Hs.166011	NM_001331	ENSG00000198561	CTNND1	CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN)	catenin delta 1	protein-coding
100	chr1	40311704	40312117	+	0	NA	intron (NR_132413, intron 1 of 3)	intron (NR_132413, intron 1 of 3)	37273	NM_001312691	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
4756	chr6	24721579	24721708	+	0	NA	Intergenic	CpG	-2240	NM_030939	81688	Hs.744857	NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
300	chr1	142967536	142967589	+	0	NA	Intergenic	(CATTC)n|Simple_repeat|Simple_repeat	234677	NR_110761	102723769	Hs.652926	NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
1439	chr13	31181947	31182255	+	0	NA	intron (NM_001313893, intron 1 of 4)	MLT1F|LTR|ERVL-MaLR	9633	NM_001313893	3146	Hs.434102	NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
4419	chr5	7802075	7802242	+	0	NA	intron (NM_020546, intron 20 of 24)	intron (NM_020546, intron 20 of 24)	49445	NM_001089584	134121	Hs.709979	NM_001089584	ENSG00000215217	C5orf49	-	chromosome 5 open reading frame 49	protein-coding
3654	chr21	10856184	10856242	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	134730	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2405	chr17	2388363	2388620	+	0	NA	intron (NM_024086, intron 2 of 9)	MER1A|DNA|hAT-Charlie	26709	NM_024086	79066	Hs.632237	NM_024086	ENSG00000127804	METTL16	METT10D	methyltransferase like 16	protein-coding
6330	chrX	131427989	131428141	+	0	NA	intron (NR_110410, intron 2 of 2)	intron (NR_110410, intron 2 of 2)	-74557	NM_001271187	57826	Hs.119889	NM_021183	ENSG00000123728	RAP2C	-	RAP2C, member of RAS oncogene family	protein-coding
4710	chr6	21202326	21202558	+	0	NA	intron (NM_017774, intron 15 of 15)	intron (NM_017774, intron 15 of 15)	309681	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
2232	chr16	33895637	33895935	+	0	NA	Intergenic	HSATII|Satellite|Satellite	66717	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
5600	chr8	43092752	43093608	+	0	NA	Intergenic	SAR|Satellite|Satellite	-54405	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
3642	chr21	10843538	10843630	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	147359	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
6308	chrX	61733652	61733957	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	837414	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
4646	chr6	6826192	6826399	+	0	NA	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	-203236	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
2432	chr17	25264486	25264585	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	151732	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
1407	chr12	129555855	129556012	+	0	NA	TTS (NM_133448)	TTS (NM_133448)	-38302	NR_104173	283352	Hs.665667	NR_104172	ENSG00000249196	LOC283352	-	uncharacterized LOC283352	ncRNA
3946	chr3	124980041	124980054	+	0	NA	intron (NM_021964, intron 7 of 8)	MER58A|DNA|hAT-Charlie	-48438	NM_024628	84561	Hs.658514	NM_024628	ENSG00000221955	SLC12A8	CCC9	solute carrier family 12 member 8	protein-coding
496	chr1	229357356	229357517	+	0	NA	Intergenic	Intergenic	-46888	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
6246	chrX	6067392	6067690	+	0	NA	intron (NM_001282145, intron 3 of 6)	intron (NM_001282145, intron 3 of 6)	-76858	NR_136577	105373156	Hs.21107	NR_136577		LOC105373156	-	uncharacterized LOC105373156	ncRNA
2829	chr19	16722155	16722358	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	16759	NM_004831	9441	Hs.715040	NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
5170	chr7	28880180	28880670	+	0	NA	Intergenic	Intergenic	117604	NM_014817	9865	Hs.744120	NM_014817	ENSG00000255690	TRIL	-	TLR4 interactor with leucine rich repeats	protein-coding
605	chr10	39108986	39109004	+	0	NA	Intergenic	Intergenic	119268	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
5289	chr7	68698113	68698295	+	0	NA	Intergenic	Intergenic	364277	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
2987	chr2	40437520	40437552	+	0	NA	intron (NM_021097, intron 1 of 9)	intron (NM_021097, intron 1 of 9)	219908	NM_001112801	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding
6166	chrUn_gl000216	30863	30869	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
2581	chr18	13395006	13395157	+	0	NA	intron (NM_181481, intron 2 of 5)	intron (NM_181481, intron 2 of 5)	32452	NR_040031	100288122	Hs.646264	NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
4760	chr6	24859776	24859905	+	0	NA	intron (NM_001346031, intron 8 of 21)	intron (NM_001346031, intron 8 of 21)	17753	NM_015864	9750	Hs.559459	NM_014722	ENSG00000111913	FAM65B	C6orf32|DFNB104|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65 member B	protein-coding
4855	chr6	61912824	61912837	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-371178	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
1699	chr14	40545257	40545623	+	0	NA	Intergenic	Intergenic	-643736	NM_203301	254170	Hs.146632	NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
42	chr1	16280902	16281118	+	0	NA	intron (NM_003443, intron 2 of 15)	intron (NM_003443, intron 2 of 15)	21617	NM_001324138	7709	Hs.433764	NM_003443	ENSG00000116809	ZBTB17	MIZ-1|ZNF151|ZNF60|pHZ-67	zinc finger and BTB domain containing 17	protein-coding
759	chr11	12340984	12341290	+	0	NA	intron (NM_032867, intron 3 of 8)	intron (NM_032867, intron 3 of 8)	32690	NM_032867	84953	Hs.128196	NM_032867	ENSG00000133808	MICALCL	Ebitein1	MICAL C-terminal like	protein-coding
5710	chr8	93975437	93975458	+	0	NA	intron (NM_001171797, intron 1 of 4)	intron (NM_001171797, intron 1 of 4)	2370	NM_001191036	286144	Hs.440643	NM_001171795	ENSG00000205133	TRIQK	C8orf83|PRO0845|UPF0599	triple QxxK/R motif containing	protein-coding
4898	chr6	81348646	81348667	+	0	NA	Intergenic	Intergenic	532329	NM_001318975	594	Hs.654441	NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
1228	chr12	79395537	79395541	+	0	NA	intron (NM_001291901, intron 2 of 9)	intron (NM_001291901, intron 2 of 9)	-43894	NM_001135806	6857	Hs.310545	NM_005639	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin 1	protein-coding
235	chr1	109152743	109152765	+	0	NA	intron (NM_001010883, intron 3 of 10)	L2a|LINE|L2	49783	NM_001010883	284611	Hs.200230	NM_001010883	ENSG00000162636	FAM102B	SYM-3B	family with sequence similarity 102 member B	protein-coding
6117	chrUn_gl000212	44105	44160	+	0	NA	intron (NR_027278, intron 1 of 7)	AluSc8|SINE|Alu	20083	NR_027278	26080	Hs.448583	NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
6106	chr9_gl000199_random	143707	144425	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
2291	chr16	51068209	51068237	+	0	NA	intron (NR_110913, intron 2 of 2)	intron (NR_110913, intron 2 of 2)	16554	NR_110913	101927334	Hs.555184	NR_110913	ENSG00000261637	LINC02127	-	long intergenic non-protein coding RNA 2127	ncRNA
5788	chr8	125056537	125057080	+	0	NA	intron (NM_001039112, intron 20 of 40)	intron (NM_001039112, intron 20 of 40)	-3785	NR_040044	439941	Hs.683919	NM_001038706	ENSG00000181171	FER1L6-AS1	C8orf54	FER1L6 antisense RNA 1	ncRNA
2591	chr18	18520344	18520385	+	0	NA	Intergenic	Intergenic	171448	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
1931	chr14	91621615	91621764	+	0	NA	intron (NM_001286470, intron 4 of 16)	MIR|SINE|MIR	28919	NR_003709	100124539	Hs.693444	NR_003709	ENSG00000221102	SNORA11B	-	small nucleolar RNA, H/ACA box 11B	snoRNA
5917	chr9	66971759	66972428	+	0	NA	intron (NR_135597, intron 4 of 4).3	ALR/Alpha|Satellite|centr	49126	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
694	chr10	78193300	78193668	+	0	NA	intron (NR_131178, intron 7 of 7)	intron (NR_131178, intron 7 of 7)	-454318	NR_120655	101929328	Hs.664552	NR_120655	ENSG00000236467	KCNMA1-AS1	-	KCNMA1 antisense RNA 1	ncRNA
5426	chr7	126210139	126210145	+	0	NA	intron (NM_001127323, intron 8 of 10)	intron (NM_001127323, intron 8 of 10)	488096	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
1103	chr12	6482467	6482528	+	0	NA	intron (NM_001159576, intron 1 of 11)	intron (NM_001159576, intron 1 of 11)	1893	NM_001159576	6337	Hs.591047	NM_001038	ENSG00000111319	SCNN1A	BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1	sodium channel epithelial 1 alpha subunit	protein-coding
5371	chr7	106766236	106766450	+	0	NA	intron (NM_002736, intron 3 of 10)	AluSg4|SINE|Alu	-43063	NM_001244262	26959	Hs.162032	NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
6357	chrY	13447771	13448563	+	0	NA	Intergenic	(CATTC)n|Simple_repeat|Simple_repeat	1085222	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4444	chr5	46333729	46333917	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-637603	NM_021072	348980	Hs.353176	NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
4268	chr4	87995210	87995402	+	0	NA	intron (NM_001313959, intron 3 of 19)	intron (NM_001313959, intron 3 of 19)	67153	NM_005935	4299	Hs.480190	NM_005935	ENSG00000172493	AFF1	AF4|MLLT2|PBM1	AF4/FMR2 family member 1	protein-coding
3788	chr22	35822187	35822713	+	0	NA	Intergenic	Intergenic	26334	NM_006739	4174	Hs.517582	NM_006739	ENSG00000100297	MCM5	CDC46|P1-CDC46	minichromosome maintenance complex component 5	protein-coding
3148	chr2	90373717	90373739	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1261844	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
2244	chr16	33899721	33899987	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	62649	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
296	chr1	142967017	142967210	+	0	NA	Intergenic	(CATTC)n|Simple_repeat|Simple_repeat	235126	NR_110761	102723769	Hs.652926	NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
265	chr1	121351598	121351648	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	90713	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
171	chr1	68221130	68221444	+	0	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	70427	NM_001924	1647	Hs.80409	NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
5435	chr7	126417963	126418142	+	0	NA	intron (NM_001127323, intron 6 of 10)	intron (NM_001127323, intron 6 of 10)	280186	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
3999	chr3	170910266	170910340	+	0	NA	intron (NM_001161560, intron 5 of 31)	intron (NM_001161560, intron 5 of 31)	-85755	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
5449	chr7	129937312	129937729	+	0	NA	intron (NM_001163446, intron 1 of 9)	intron (NM_001163446, intron 1 of 9)	4546	NM_016352	51200	Hs.93764	NM_016352	ENSG00000128510	CPA4	CPA3	carboxypeptidase A4	protein-coding
4327	chr4	140842702	140843295	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	232235	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
4206	chr4	49646368	49651634	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	660342	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
2687	chr18	42526526	42526564	+	0	NA	intron (NM_015559, intron 3 of 5)	intron (NM_015559, intron 3 of 5)	23586	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
6382	chrY	13677424	13677507	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	855924	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
6079	chr9	140222677	140222803	+	0	NA	intron (NM_017820, intron 17 of 21)	intron (NM_017820, intron 17 of 21)	-26037	NM_001004354	441478	Hs.535075	NM_001004354	ENSG00000198435	NRARP	-	NOTCH-regulated ankyrin repeat protein	protein-coding
2012	chr15	45104684	45104808	+	0	NA	Intergenic	Intergenic	76186	NM_001301145	140691	Hs.745248	NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
5111	chr7	3307522	3307859	+	0	NA	Intergenic	Intergenic	-33390	NM_152744	221935	Hs.653013	NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
3201	chr2	100124229	100124886	+	0	NA	Intergenic	MER110-int|LTR|ERV1	-18039	NR_135650	51455	Hs.443077	NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1, DNA directed polymerase	protein-coding
582	chr10	39079164	39079195	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	89452	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
3257	chr2	146189654	146189781	+	0	NA	Intergenic	Intergenic	764183	NR_033870	401014	Hs.742290	NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
1884	chr14	82955769	82956007	+	0	NA	Intergenic	L2b|LINE|L2	-866483	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
5296	chr7	69118603	69118969	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	54881	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
5555	chr8	18460330	18460348	+	0	NA	intron (NM_015310, intron 11 of 15)	intron (NM_015310, intron 11 of 15)	206066	NM_206909	23362	Hs.434255	NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
4868	chr6	61914527	61914675	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-369407	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
5303	chr7	69120292	69120474	+	0	NA	intron (NM_015570, intron 1 of 18)	(TTG)n|Simple_repeat|Simple_repeat	56478	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
4167	chr4	49142087	49142216	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	153492	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
557	chr10	38814452	38814513	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	97408	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
3621	chr21	10807414	10807426	+	0	NA	Intergenic	HSATII|Satellite|Satellite	183523	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2726	chr18	49838394	49838632	+	0	NA	Intergenic	Intergenic	-28029	NM_005215	1630	Hs.162025	NM_005215	ENSG00000187323	DCC	CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1	DCC netrin 1 receptor	protein-coding
441	chr1	209425535	209426086	+	0	NA	Intergenic	Intergenic	-72991	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
6372	chrY	13458334	13458339	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1075053	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
6182	chrUn_gl000216	66704	66871	+	0	NA	NA	HSATII|Satellite|Satellite	NA	NA								
5653	chr8	70070719	70070880	+	0	NA	Intergenic	Intergenic	-54374	NR_039986	100505718	Hs.122386	NR_039986	ENSG00000253658	LINC01592	-	long intergenic non-protein coding RNA 1592	ncRNA
4041	chr3	177803501	177803598	+	0	NA	Intergenic	Intergenic	268896	NR_110826	102724550	Hs.570526	NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
3325	chr2	179088170	179088414	+	0	NA	intron (NM_001201481, intron 1 of 23)	intron (NM_001201481, intron 1 of 23)	29084	NM_032523	114880	Hs.318775	NM_032523	ENSG00000079156	OSBPL6	ORP6	oxysterol binding protein like 6	protein-coding
672	chr10	70631689	70631898	+	0	NA	intron (NM_001130161, intron 1 of 4)	intron (NM_001130161, intron 1 of 4)	-29241	NM_024045	79009	Hs.522984	NM_024045	ENSG00000107625	DDX50	GU2|GUB|RH-II/GuB|mcdrh	DExD-box helicase 50	protein-coding
983	chr11	111161651	111162036	+	0	NA	Intergenic	Intergenic	-7428	NM_001271458	120376	Hs.31409	NM_001136105	ENSG00000214290	COLCA2	C11orf93|CASC13|LOH11CR1G	colorectal cancer associated 2	protein-coding
4257	chr4	82729188	82729425	+	0	NA	Intergenic	Intergenic	-336224	NM_152545	153020	Hs.591696	NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
3806	chr22	42795757	42796115	+	0	NA	intron (NM_001318323, intron 2 of 4)	intron (NM_001318323, intron 2 of 4)	-30722	NR_120596	102723775	Hs.335413	NR_120595	ENSG00000229891	LINC01315	lnc-C22orf32-1	long intergenic non-protein coding RNA 1315	ncRNA
3689	chr21	37069721	37069970	+	0	NA	Intergenic	Intergenic	-23168	NR_030414	768219		NR_030414	ENSG00000211590	MIR802	MIRN802|hsa-mir-802	microRNA 802	ncRNA
5858	chr9	8694876	8695018	+	0	NA	intron (NM_001040712, intron 1 of 29)	MLT1L|LTR|ERVL-MaLR	38999	NM_001171025	5789	Hs.446083	NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type D	protein-coding
4482	chr5	72578144	72578335	+	0	NA	Intergenic	Intergenic	-80451	NR_134291	340090	Hs.434311	NR_134291		LOC340090	-	uncharacterized LOC340090	ncRNA
3496	chr20	18648130	18648247	+	0	NA	intron (NM_080820, intron 4 of 5)	intron (NM_080820, intron 4 of 5)	31164	NR_109955	101929526	Hs.639402	NR_109955	ENSG00000233993	LOC101929526	-	uncharacterized LOC101929526	ncRNA
5391	chr7	111597827	111597858	+	0	NA	intron (NM_014705, intron 8 of 51)	intron (NM_014705, intron 8 of 51)	149281	NR_103806	100506413	Hs.677513	NR_103806	ENSG00000225572	DOCK4-AS1	-	DOCK4 antisense RNA 1	ncRNA
5540	chr8	6649734	6649868	+	0	NA	Intergenic	MER51E|LTR|ERV1	-43275	NR_045217	100652791	Hs.369771	NR_045217	ENSG00000245857	GS1-24F4.2	-	uncharacterized LOC100652791	ncRNA
751	chr11	7619169	7619320	+	0	NA	intron (NM_001256568, intron 2 of 20)	intron (NM_001256568, intron 2 of 20)	827	NM_001256568	8495	Hs.655714	NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
1746	chr14	59273123	59273352	+	0	NA	Intergenic	LTR16D2|LTR|ERVL	-21769	NR_110547	102723742	Hs.232734	NR_110547	ENSG00000258583	LINC01500	-	long intergenic non-protein coding RNA 1500	ncRNA
4551	chr5	132626521	132626674	+	0	NA	intron (NM_015082, intron 6 of 15)	intron (NM_015082, intron 6 of 15)	136801	NR_031621	100302134		NR_031621	ENSG00000221287	MIR1289-2	MIRN1289-2|hsa-mir-1289-2	microRNA 1289-2	ncRNA
4300	chr4	114947510	114947835	+	0	NA	Intergenic	L2a|LINE|L2	-46794	NM_024590	79642	Hs.22895	NM_024590	ENSG00000180801	ARSJ	-	arylsulfatase family member J	protein-coding
3356	chr2	210291190	210291426	+	0	NA	intron (NM_001039538, intron 1 of 14)	intron (NM_001039538, intron 1 of 14)	2537	NM_001039538	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding
2167	chr16	9241287	9241383	+	0	NA	Intergenic	AluY|SINE|Alu	55798	NM_014117	29035	Hs.221497	NM_014117	ENSG00000182831	C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
1980	chr14	104286438	104286507	+	0	NA	intron (NM_015316, intron 1 of 16)	intron (NM_015316, intron 1 of 16)	27455	NM_015316	23368	Hs.709297	NM_015316	ENSG00000088808	PPP1R13B	ASPP1|p53BP2-like|p85	protein phosphatase 1 regulatory subunit 13B	protein-coding
2275	chr16	46430825	46430866	+	0	NA	Intergenic	HSATII|Satellite|Satellite	172164	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
4004	chr3	170957612	170957699	+	0	NA	intron (NM_001161560, intron 2 of 31)	intron (NM_001161560, intron 2 of 31)	-133107	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
4890	chr6	80520282	80520545	+	0	NA	intron (NR_131786, intron 2 of 4)	intron (NR_131786, intron 2 of 4)	1550	NR_131786	89758	Hs.288213	NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
5024	chr6	113964493	113964894	+	0	NA	intron (NR_125844, intron 1 of 2)	intron (NR_125844, intron 1 of 2)	6584	NR_125844	101927686	Hs.402044	NR_125844	ENSG00000230943	LOC101927686	-	uncharacterized LOC101927686	ncRNA
677	chr10	72345194	72345448	+	0	NA	Intergenic	Intergenic	17210	NM_001083116	5551	Hs.2200	NM_005041	ENSG00000180644	PRF1	FLH2|HPLH2|P1|PFN1|PFP	perforin 1	protein-coding
5532	chr8	3048716	3048882	+	0	NA	intron (NM_033225, intron 33 of 69)	AluSz|SINE|Alu	-462808	NR_125425	101927815	Hs.571467	NR_125423	ENSG00000254319	LOC101927815	-	uncharacterized LOC101927815	ncRNA
907	chr11	51591544	51591619	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	76299	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
5925	chr9	69710598	69711386	+	0	NA	intron (NR_135597, intron 4 of 4).2	ALR/Alpha|Satellite|centr	46792	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
1868	chr14	79437318	79437568	+	0	NA	intron (NM_001330195, intron 14 of 20)	intron (NM_001330195, intron 14 of 20)	-228882	NR_135159	105370586		NR_135159	ENSG00000258419	LOC105370586	-	uncharacterized LOC105370586	ncRNA
3480	chr20	12571857	12572160	+	0	NA	Intergenic	L2|LINE|L2	345603	NR_109872	102606466	Hs.602196	NR_109872		LOC102606466	-	uncharacterized LOC102606466	ncRNA
3154	chr2	90375887	90377437	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1264778	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
590	chr10	39088239	39088468	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	98626	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
1210	chr12	67986398	67986474	+	0	NA	Intergenic	Intergenic	-56076	NM_006482	8445	Hs.173135	NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
5812	chr8	140966658	140966915	+	0	NA	intron (NM_031466, intron 19 of 22)	MLT1A|LTR|ERVL-MaLR	143848	NR_144431	359809	Hs.26814	NR_144431		PEG13	-	paternally expressed 13	ncRNA
5062	chr6	149493019	149493379	+	0	NA	Intergenic	Intergenic	-45861	NM_001292035	23118	Hs.269775	NM_015093	ENSG00000055208	TAB2	CHTD2|MAP3K7IP2|TAB-2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding
4201	chr4	49640728	49643204	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	653307	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
664	chr10	65388202	65388497	+	0	NA	Intergenic	Intergenic	-106514	NM_001322258	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
5832	chr9	1495904	1496003	+	0	NA	Intergenic	Intergenic	445333	NM_181872	10655	Hs.59506	NM_006557	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
5639	chr8	62602107	62602219	+	0	NA	intron (NM_032466, intron 1 of 13)	intron (NM_032466, intron 1 of 13)	245	NM_001164752	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
1790	chr14	68555714	68555721	+	0	NA	intron (NM_001321809, intron 7 of 11)	intron (NM_001321809, intron 7 of 11)	265408	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
4363	chr4	166320110	166320236	+	0	NA	intron (NM_001873, intron 1 of 8)	intron (NM_001873, intron 1 of 8)	12779	NR_030304	693163		NR_030304	ENSG00000207559	MIR578	MIRN578|hsa-mir-578	microRNA 578	ncRNA
2264	chr16	34022501	34022510	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-60002	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
79	chr1	35942021	35942040	+	0	NA	intron (NM_024874, intron 4 of 20)	intron (NM_024874, intron 4 of 20)	81007	NM_024874	79932	Hs.456507	NM_024874	ENSG00000142687	KIAA0319L	AAVR	KIAA0319 like	protein-coding
6342	chrX	149831874	149832066	+	0	NA	exon (NM_000252, exon 14 of 15)	exon (NM_000252, exon 14 of 15)	-29867	NM_001306144	8776	Hs.347187	NM_003828	ENSG00000063601	MTMR1	-	myotubularin related protein 1	protein-coding
3845	chr3	37534576	37534842	+	0	NA	intron (NM_002207, intron 4 of 27)	intron (NM_002207, intron 4 of 27)	40896	NM_002207	3680	Hs.113157	NM_002207	ENSG00000144668	ITGA9	ALPHA-RLC|ITGA4L|RLC	integrin subunit alpha 9	protein-coding
1420	chr12	130797297	130797336	+	0	NA	Intergenic	Intergenic	-25117	NM_004764	9271	Hs.405659	NM_004764	ENSG00000125207	PIWIL1	CT80.1|HIWI|MIWI|PIWI	piwi like RNA-mediated gene silencing 1	protein-coding
3295	chr2	162029327	162029536	+	0	NA	intron (NM_001199135, intron 1 of 7)	L2b|LINE|L2	12492	NM_001199135	10010	Hs.132257	NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
3437	chr2	236877032	236877223	+	0	NA	exon (NM_014914, exon 12 of 17)	exon (NM_014914, exon 12 of 17)	199525	NM_001485	2637	Hs.184945	NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
352	chr1	170114347	170114750	+	0	NA	promoter-TSS (NM_001136107)	promoter-TSS (NM_001136107)	-640	NM_001136107	149281	Hs.553612	NM_001136107	ENSG00000203740	METTL11B	C1orf184|HOMT1B|NTM1B	methyltransferase like 11B	protein-coding
2502	chr17	57047022	57047048	+	0	NA	exon (NM_014906, exon 4 of 7)	exon (NM_014906, exon 4 of 7)	137247	NM_001320988	4591	Hs.579079	NM_015294	ENSG00000108395	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
3865	chr3	73160163	73160275	+	0	NA	Intergenic	U2|snRNA|snRNA	49409	NM_018029	55096	Hs.658858	NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus-like nucleoprotein 2	protein-coding
126	chr1	50605789	50605919	+	0	NA	intron (NM_001324215, intron 1 of 5)	intron (NM_001324215, intron 1 of 5)	30566	NM_001324215	1996	Hs.213050	NM_021952	ENSG00000162374	ELAVL4	HUD|PNEM	ELAV like RNA binding protein 4	protein-coding
6314	chrX	61839403	61839433	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	731800	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
1034	chr11	118494335	118494428	+	0	NA	intron (NM_001144758, intron 4 of 22)	MIRc|SINE|MIR	16075	NM_001144758	23187	Hs.504062	NM_015157	ENSG00000019144	PHLDB1	LL5A	pleckstrin homology like domain family B member 1	protein-coding
2803	chr19	2984030	2984340	+	0	NA	intron (NM_024760, intron 4 of 15)	intron (NM_024760, intron 4 of 15)	6649	NM_001143986	79816	Hs.334507	NM_024760	ENSG00000104953	TLE6	GRG6|PREMBL	transducin like enhancer of split 6	protein-coding
2875	chr19_gl000208_random	597	674	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
5819	chr8	142877623	142877771	+	0	NA	Intergenic	Intergenic	-10023	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
1533	chr13	97909824	97909899	+	0	NA	intron (NM_001306070, intron 1 of 7)	intron (NM_001306070, intron 1 of 7)	35311	NM_144778	10150	Hs.657347	NM_144778	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
3679	chr21	36629105	36629241	+	0	NA	Intergenic	Intergenic	-207578	NM_001754	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
651	chr10	42817198	42817261	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	46264	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
176	chr1	72375039	72375133	+	0	NA	intron (NM_173808, intron 2 of 6)	intron (NM_173808, intron 2 of 6)	-72391	NR_046218	100852409	Hs.681780	NR_046218	ENSG00000228853	NEGR1-IT1	-	NEGR1 intronic transcript 1	ncRNA
4660	chr6	15061502	15061726	+	0	NA	Intergenic	L2b|LINE|L2	-184592	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
3145	chr2	90373074	90373187	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1261246	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
947	chr11	72084621	72084759	+	0	NA	intron (NM_030813, intron 4 of 16)	intron (NM_030813, intron 4 of 16)	61038	NM_001258393	81570	Hs.523877	NM_030813	ENSG00000162129	CLPB	ANKCLB|HSP78|MEGCANN|MGCA7|SKD3	ClpB homolog, mitochondrial AAA ATPase chaperonin	protein-coding
256	chr1	117014817	117015228	+	0	NA	intron (NR_125973, intron 2 of 3)	intron (NR_125973, intron 2 of 3)	6426	NR_125972	101929023	Hs.668091	NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
2810	chr19	6088077	6088221	+	0	NA	intron (NM_134433, intron 1 of 16)	intron (NM_134433, intron 1 of 16)	22515	NM_000635	5990	Hs.465709	NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
5071	chr6	156670531	156670641	+	0	NA	Intergenic	Intergenic	402655	NR_031606	100302259		NR_031606	ENSG00000221456	MIR1202	MIRN1202|hsa-mir-1202	microRNA 1202	ncRNA
920	chr11	62537308	62537542	+	0	NA	Intergenic	Intergenic	-1350	NM_006473	10629	Hs.714400	NM_006473	ENSG00000162227	TAF6L	PAF65A	TATA-box binding protein associated factor 6 like	protein-coding
428	chr1	208274117	208274129	+	0	NA	intron (NM_025179, intron 5 of 31)	intron (NM_025179, intron 5 of 31)	143542	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
4840	chr6	58775948	58776083	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-488291	NR_132996	106660612	Hs.561539	NR_125727	ENSG00000215190	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
2305	chr16	52299744	52299833	+	0	NA	intron (NR_135281, intron 1 of 2)	intron (NR_135281, intron 1 of 2)	7312	NR_135281	283854	Hs.266768	NR_135281	ENSG00000260887	CASC22	LINC01373|LincRNA-ENST00000515084|TCONS_00024290	cancer susceptibility candidate 22 (non-protein coding)	ncRNA
4545	chr5	127270732	127270850	+	0	NA	intron (NM_001317938, intron 6 of 6)	intron (NM_001317938, intron 6 of 6)	147975	NR_015360	644873	Hs.340623	NR_015360	ENSG00000245937	LINC01184	-	long intergenic non-protein coding RNA 1184	ncRNA
4344	chr4	151288142	151288242	+	0	NA	intron (NM_006726, intron 48 of 57)	intron (NM_006726, intron 48 of 57)	-214885	NM_006439	10586	Hs.584852	NM_006439	ENSG00000181541	MAB21L2	MCOPS14	mab-21 like 2	protein-coding
3758	chr22	18884176	18884270	+	0	NA	Intergenic	HSATI|Satellite|Satellite	-2279	NR_136571	100996432	Hs.631668	NR_136571		LINC01663	-	long intergenic non-protein coding RNA 1663	ncRNA
3545	chr20	29829289	29829310	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-16168	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
5273	chr7	64953856	64954171	+	0	NA	Intergenic	HSATII|Satellite|Satellite	115301	NM_007139	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
500	chr1	230322179	230322313	+	0	NA	intron (NM_001291866, intron 2 of 15)	intron (NM_001291866, intron 2 of 15)	119304	NM_004481	2590	Hs.743964	NM_004481	ENSG00000143641	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
1221	chr12	78140273	78140446	+	0	NA	Intergenic	Intergenic	-84710	NM_001024383	89795	Hs.655301	NM_014903	ENSG00000067798	NAV3	POMFIL1|STEERIN3|unc53H3	neuron navigator 3	protein-coding
6135	chrUn_gl000216	9225	9359	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
1200	chr12	59480384	59480443	+	0	NA	Intergenic	Intergenic	-166094	NM_153377	121227	Hs.253736	NM_153377	ENSG00000139263	LRIG3	LIG3	leucine rich repeats and immunoglobulin like domains 3	protein-coding
1757	chr14	61669751	61669955	+	0	NA	Intergenic	Intergenic	78677	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
4193	chr4	49635195	49637700	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	647788	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
918	chr11	61716936	61717443	+	0	NA	promoter-TSS (NR_134580)	promoter-TSS (NR_134580)	-167	NM_001300787	7439	Hs.524910	NM_004183	ENSG00000167995	BEST1	ARB|BEST|BMD|RP50|TU15B|VMD2	bestrophin 1	protein-coding
1413	chr12	130034750	130034841	+	0	NA	intron (NM_133448, intron 2 of 8)	intron (NM_133448, intron 2 of 8)	341649	NR_110058	101927735	Hs.569212	NR_110058	ENSG00000256699	LOC101927735	-	uncharacterized LOC101927735	ncRNA
5336	chr7	83921314	83921575	+	0	NA	Intergenic	Intergenic	-97227	NM_006080	10371	Hs.252451	NM_006080	ENSG00000075213	SEMA3A	COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1	semaphorin 3A	protein-coding
4386	chr5	1546377	1546767	+	0	NA	Intergenic	Intergenic	-22480	NM_024830	79888	Hs.368853	NM_024830	ENSG00000153395	LPCAT1	AGPAT10|AGPAT9|AYTL2|LPCAT-1|PFAAP3|lpcat|lysoPAFAT	lysophosphatidylcholine acyltransferase 1	protein-coding
2107	chr15	76690587	76690682	+	0	NA	intron (NM_001145923, intron 27 of 31)	MIR|SINE|MIR	61569	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
1275	chr12	100645807	100645832	+	0	NA	TTS (NM_152317)	TTS (NM_152317)	15038	NM_152317	120863	Hs.653118	NM_152317	ENSG00000166153	DEPDC4	DEP.4	DEP domain containing 4	protein-coding
6326	chrX	129907100	129907155	+	0	NA	intron (NM_182314, intron 3 of 15)	L2b|LINE|L2	-29483	NR_135655	105373338	Hs.642023	NR_135655		LOC105373338	-	uncharacterized LOC105373338	ncRNA
2211	chr16	33865182	33865210	+	0	NA	Intergenic	AluYa8|SINE|Alu	97307	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
1598	chr13	108629507	108629913	+	0	NA	Intergenic	Intergenic	-110250	NM_001080396	728215	Hs.535394	NM_001080396	ENSG00000204442	FAM155A	-	family with sequence similarity 155 member A	protein-coding
4941	chr6	92369406	92369528	+	0	NA	intron (NR_104154, intron 2 of 3)	intron (NR_104154, intron 2 of 3)	30679	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA
3453	chr20	2227273	2227818	+	0	NA	Intergenic	Intergenic	39971	NM_001287682	388780	Hs.132163	NM_001287682		LOC388780	-	uncharacterized LOC388780	protein-coding
1856	chr14	77671088	77671232	+	0	NA	intron (NM_020431, intron 1 of 23)	MIR|SINE|MIR	23058	NM_020431	57156	Hs.22452	NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|hsCSC1	transmembrane protein 63C	protein-coding
1491	chr13	59999260	59999850	+	0	NA	Intergenic	Intergenic	-587297	NR_046539	100874195	Hs.664101	NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
1362	chr12	117157206	117157681	+	0	NA	intron (NM_024738, intron 4 of 4)	intron (NM_024738, intron 4 of 4)	18432	NM_024738	79794	Hs.592011	NM_024738	ENSG00000111412	C12orf49	-	chromosome 12 open reading frame 49	protein-coding
4155	chr4	49133094	49133097	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	144436	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
1804	chr14	68846813	68847128	+	0	NA	intron (NM_001321809, intron 8 of 11)	intron (NM_001321809, intron 8 of 11)	248534	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
632	chr10	42409057	42409147	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	454391	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
2357	chr16	73251233	73251467	+	0	NA	Intergenic	Intergenic	-73004	NM_207385	388289	Hs.371893	NM_207385		C16orf47	-	chromosome 16 open reading frame 47	protein-coding
394	chr1	202933768	202933841	+	0	NA	exon (NM_016243, exon 6 of 9)	exon (NM_016243, exon 6 of 9)	2600	NM_016243	51706	Hs.334832	NM_016243	ENSG00000159348	CYB5R1	B5R.1|B5R1|B5R2|NQO3A2|humb5R2	cytochrome b5 reductase 1	protein-coding
1371	chr12	117932913	117933104	+	0	NA	intron (NM_173598, intron 14 of 19)	intron (NM_173598, intron 14 of 19)	-133401	NM_001204218	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
2484	chr17	55043577	55043820	+	0	NA	Intergenic	PABL_A|LTR|ERV1	-5287	NM_004645	8161	Hs.532795	NM_004645	ENSG00000121058	COIL	CLN80|p80-coilin	coilin	protein-coding
5068	chr6	153530125	153530398	+	0	NA	Intergenic	Intergenic	-77872	NM_012419	26575	Hs.166313	NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G-protein signaling 17	protein-coding
2659	chr18	35567710	35567876	+	0	NA	Intergenic	Intergenic	330695	NR_036202	100422857		NR_036202	ENSG00000266530	MIR4318	-	microRNA 4318	ncRNA
513	chr1	246362442	246362468	+	0	NA	intron (NM_001167740, intron 5 of 11)	L1PA16|LINE|L1	218259	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
4954	chr6	97052921	97053187	+	0	NA	intron (NM_001170807, intron 3 of 5)	intron (NM_001170807, intron 3 of 5)	42053	NM_001322467	9457	Hs.632608	NM_020482	ENSG00000112214	FHL5	1700027G07Rik|ACT|FHL-5|dJ393D12.2	four and a half LIM domains 5	protein-coding
5903	chr9	66834121	66834216	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-88799	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
3938	chr3	124211671	124211786	+	0	NA	exon (NM_001322990, exon 32 of 34)	exon (NM_001322990, exon 32 of 34)	-91778	NM_001322993	8997	Hs.8004	NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
50	chr1	16886063	16886269	+	0	NA	Intergenic	L1MEc|LINE|L1	10757	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
2645	chr18	32287824	32287914	+	0	NA	intron (NM_001128175, intron 2 of 11)	intron (NM_001128175, intron 2 of 11)	-2327	NM_032978	1837	Hs.643454	NM_001390	ENSG00000134769	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin alpha	protein-coding
1519	chr13	94321787	94322164	+	0	NA	intron (NM_005708, intron 2 of 8)	intron (NM_005708, intron 2 of 8)	188751	NR_046536	100873973	Hs.615939	NR_046536		GPC6-AS2	-	GPC6 antisense RNA 2	ncRNA
2633	chr18	31894908	31895533	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-91705	NM_001198546	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
3173	chr2	92289870	92291829	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	161690	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
797	chr11	16919192	16919309	+	0	NA	intron (NM_001329631, intron 3 of 22)	intron (NM_001329631, intron 3 of 22)	116713	NM_001329630	144100	Hs.12332	NM_175058	ENSG00000166689	PLEKHA7	-	pleckstrin homology domain containing A7	protein-coding
2459	chr17	32700885	32701553	+	0	NA	Intergenic	Intergenic	-10967	NM_002981	6346	Hs.72918	NM_002981	ENSG00000108702	CCL1	I-309|P500|SCYA1|SISe|TCA3	C-C motif chemokine ligand 1	protein-coding
2197	chr16	23218936	23219256	+	0	NA	intron (NM_001039, intron 6 of 12)	L2c|LINE|L2	25056	NM_001039	6340	Hs.371727	NM_001039	ENSG00000166828	SCNN1G	BESC3|ENaCg|ENaCgamma|PHA1|SCNEG	sodium channel epithelial 1 gamma subunit	protein-coding
3543	chr20	29823073	29823074	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-22394	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
5570	chr8	26187297	26187422	+	0	NA	intron (NM_002717, intron 2 of 9)	MER20B|DNA|hAT-Charlie	36627	NM_001177591	5520	Hs.146339	NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A	protein phosphatase 2 regulatory subunit Balpha	protein-coding
4318	chr4	139818958	139819214	+	0	NA	intron (NR_133945, intron 2 of 2)	intron (NR_133945, intron 2 of 2)	114714	NR_133945	105377448	Hs.200280	NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
5207	chr7	51345462	51345601	+	0	NA	intron (NM_001287438, intron 1 of 7)	intron (NM_001287438, intron 1 of 7)	39027	NM_015198	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
1236	chr12	92759334	92759613	+	0	NA	Intergenic	Intergenic	-55834	NR_027932	574028	Hs.730377	NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	protein-coding
5323	chr7	77314470	77314690	+	0	NA	non-coding (NR_134251, exon 2 of 4)	non-coding (NR_134251, exon 2 of 4)	11002	NR_134251	100505854	Hs.72451	NR_038361	ENSG00000214293	APTR	RSBN1L-AS1	Alu-mediated CDKN1A/p21 transcriptional regulator (non-protein coding)	ncRNA
2413	chr17	9274184	9274673	+	0	NA	intron (NM_004853, intron 7 of 7)	intron (NM_004853, intron 7 of 7)	-191993	NR_110828	101928266	Hs.639880	NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
645	chr10	42799673	42799684	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	63815	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
4400	chr5	4516545	4516705	+	0	NA	Intergenic	MIRb|SINE|MIR	-256969	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA
2566	chr18	3715365	3716052	+	0	NA	intron (NM_001308390, intron 4 of 10)	intron (NM_001308390, intron 4 of 10)	111973	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
5493	chr7	141258118	141258310	+	0	NA	intron (NM_018238, intron 2 of 15)	AluSx|SINE|Alu	7136	NM_018238	55750	Hs.743318	NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
6406	chrY	13808983	13808994	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	724401	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1176	chr12	41681760	41682090	+	0	NA	intron (NM_001164595, intron 3 of 9)	intron (NM_001164595, intron 3 of 9)	99675	NM_001164595	29951	Hs.380044	NM_013377	ENSG00000165966	PDZRN4	LNX4|SAMCAP3L	PDZ domain containing ring finger 4	protein-coding
5015	chr6	111873051	111873453	+	0	NA	intron (NR_034109, intron 1 of 1)	intron (NR_034109, intron 1 of 1)	15311	NM_001164283	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
2881	chr2	1168557	1168834	+	0	NA	intron (NM_018968, intron 7 of 16)	intron (NM_018968, intron 7 of 16)	-221617	NR_136151	101060391	Hs.120377	NR_136151		LOC101060391	-	uncharacterized LOC101060391	ncRNA
1039	chr11	123178869	123178992	+	0	NA	Intergenic	Intergenic	73290	NR_039714	100616319		NR_039714	ENSG00000265357	MIR4493	-	microRNA 4493	ncRNA
1815	chr14	70180763	70181013	+	0	NA	3' UTR (NM_014734, exon 6 of 6)	3' UTR (NM_014734, exon 6 of 6)	-52916	NM_006925	6430	Hs.632326	NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
3662	chr21	11186374	11186889	+	0	NA	Intergenic	AluSc8|SINE|Alu	-87694	NM_001187	574	Hs.545789	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
1005	chr11	113420726	113421271	+	0	NA	Intergenic	Intergenic	-74997	NM_000795	1813	Hs.73893	NM_000795	ENSG00000149295	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
4723	chr6	21750130	21750201	+	0	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	83490	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
4280	chr4	98239055	98239212	+	0	NA	Intergenic	Intergenic	-48944	NR_102713	101410545	Hs.628520	NR_102713	ENSG00000251620	STPG2-AS1	-	STPG2 antisense RNA 1	ncRNA
28	chr1	8767023	8767069	+	0	NA	intron (NM_001042681, intron 1 of 22)	intron (NM_001042681, intron 1 of 22)	110653	NM_012102	473	Hs.463041	NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
4130	chr4	49094679	49100382	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	108871	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
2089	chr15	70819453	70819475	+	0	NA	Intergenic	Intergenic	59481	NR_135691	101929151	Hs.434703	NR_135691	ENSG00000280639	LOC101929151	-	uncharacterized LOC101929151	ncRNA
2087	chr15	70819138	70819294	+	0	NA	Intergenic	Intergenic	59729	NR_135691	101929151	Hs.434703	NR_135691	ENSG00000280639	LOC101929151	-	uncharacterized LOC101929151	ncRNA
3474	chr20	11331996	11332086	+	0	NA	Intergenic	Intergenic	-78010	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
4575	chr5	145999994	146000257	+	0	NA	intron (NM_181675, intron 7 of 9)	intron (NM_181675, intron 7 of 9)	-104449	NM_194251	134391	Hs.483732	NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|PGR7	G protein-coupled receptor 151	protein-coding
215	chr1	89720796	89720925	+	0	NA	Intergenic	L1MA2|LINE|L1	17684	NM_052942	115362	Hs.513726	NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
4410	chr5	7209413	7209498	+	0	NA	Intergenic	Intergenic	60012	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
3320	chr2	176669045	176669308	+	0	NA	Intergenic	Intergenic	197897	NM_001305010	80856	Hs.209561	NM_030650	ENSG00000144320	LNPK	KIAA1715|LNP|LNP1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding
687	chr10	77977614	77977727	+	0	NA	intron (NR_131178, intron 6 of 7)	intron (NR_131178, intron 6 of 7)	435151	NM_032024	83938	Hs.118161	NM_032024	ENSG00000148655	C10orf11	CDA017	chromosome 10 open reading frame 11	protein-coding
5106	chr7	2197662	2197678	+	0	NA	intron (NM_001013836, intron 10 of 18)	intron (NM_001013836, intron 10 of 18)	74913	NM_003550	8379	Hs.654838	NM_003550	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient like 1	protein-coding
2184	chr16	16653563	16653624	+	0	NA	Intergenic	Intergenic	180491	NM_001282507	101059938	Hs.634612	NM_001282507	ENSG00000214967	NPIPA7	-	nuclear pore complex interacting protein family member A7	protein-coding
5824	chr9	512744	512954	+	0	NA	intron (NM_015158, intron 1 of 11)	HAL1b|LINE|L1	8154	NM_015158	23189	Hs.306764	NM_015158	ENSG00000107104	KANK1	ANKRD15|CPSQ2|KANK	KN motif and ankyrin repeat domains 1	protein-coding
3161	chr2	91612376	91614045	+	0	NA	Intergenic	HSATII|Satellite|Satellite	234765	NR_027238	654342	Hs.469287	NR_027238		LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
2298	chr16	51826985	51827166	+	0	NA	Intergenic	Intergenic	30645	NR_110916	101927364	Hs.133120	NR_110916	ENSG00000260057	LINC01571	-	long intergenic non-protein coding RNA 1571	ncRNA
5509	chr7	146974502	146974611	+	0	NA	intron (NM_014141, intron 8 of 23)	intron (NM_014141, intron 8 of 23)	100657	NR_031645	100313895		NR_031645	ENSG00000221442	MIR548F4	MIR548F-4|MIRN548F4|hsa-mir-548f-4	microRNA 548f-4	ncRNA
5692	chr8	85165537	85165559	+	0	NA	intron (NM_001100391, intron 1 of 8)	AluSg|SINE|Alu	68448	NM_001100391	138046	Hs.121663	NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
2336	chr16	66369046	66369508	+	0	NA	Intergenic	Intergenic	-31233	NM_001795	1003	Hs.76206	NM_001795	ENSG00000179776	CDH5	7B4|CD144	cadherin 5	protein-coding
5872	chr9	13979298	13979406	+	0	NA	Intergenic	AluSx1|SINE|Alu	51382	NR_038194	100113404	Hs.149786	NR_038194	ENSG00000205636	LINC00583	C9orf146	long intergenic non-protein coding RNA 583	ncRNA
5465	chr7	131198547	131198751	+	0	NA	intron (NM_001018111, intron 1 of 8)	intron (NM_001018111, intron 1 of 8)	42727	NM_005397	5420	Hs.744213	NM_005397	ENSG00000128567	PODXL	Gp200|PC|PCLP|PCLP-1	podocalyxin like	protein-coding
4424	chr5	14185853	14185984	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	42107	NM_007118	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
2190	chr16	19257121	19257234	+	0	NA	intron (NM_001330509, intron 7 of 7)	intron (NM_001330509, intron 7 of 7)	-39928	NM_001256720	728276	Hs.632180	NM_001256720	ENSG00000261210	CLEC19A	-	C-type lectin domain family 19 member A	protein-coding
826	chr11	21745101	21745409	+	0	NA	Intergenic	Intergenic	-469467	NM_213599	203859	Hs.154329	NM_213599	ENSG00000171714	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
3990	chr3	159600590	159600953	+	0	NA	intron (NM_001197113, intron 6 of 10)	intron (NM_001197113, intron 6 of 10)	43121	NM_001197109	29970	Hs.134665	NM_014575	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
2494	chr17	55994550	55994859	+	0	NA	intron (NM_001271875, intron 1 of 10)	intron (NM_001271875, intron 1 of 10)	-13954	NM_001292025	404093	Hs.46679	NM_001271875	ENSG00000180891	CUEDC1	-	CUE domain containing 1	protein-coding
1344	chr12	114677907	114678208	+	0	NA	Intergenic	Intergenic	165911	NM_181486	6910	Hs.381715	NM_000192	ENSG00000089225	TBX5	HOS	T-box 5	protein-coding
5467	chr7	133163533	133163659	+	0	NA	intron (NM_001037126, intron 8 of 9)	intron (NM_001037126, intron 8 of 9)	187961	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
3840	chr3	29107251	29107417	+	0	NA	Intergenic	Intergenic	215096	NR_109804	100873979	Hs.99391	NR_109804		RBMS3-AS3	-	RBMS3 antisense RNA 3	ncRNA
5265	chr7	61977120	61977162	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	787293	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
3338	chr2	191417991	191418471	+	0	NA	Intergenic	MIRc|SINE|MIR	-18763	NR_136298	100131211	Hs.659824	NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
2329	chr16	53984455	53984619	+	0	NA	intron (NM_001080432, intron 8 of 8)	intron (NM_001080432, intron 8 of 8)	-88768	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1	ncRNA
6418	chrY	13817995	13818004	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	715390	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4437	chr5	34900871	34901135	+	0	NA	TTS (NM_001317949)	TTS (NM_001317949)	14728	NR_026591	5810	Hs.38114	NM_002853	ENSG00000113456	RAD1	HRAD1|REC1	RAD1 checkpoint DNA exonuclease	protein-coding
2980	chr2	38013835	38014275	+	0	NA	Intergenic	Intergenic	42799	NR_110011	101929559	Hs.468200	NR_110011	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
2653	chr18	35084205	35084340	+	0	NA	intron (NM_001025087, intron 1 of 12)	AluSx|SINE|Alu	-37805	NR_132967	106635546		NR_132967		SNORA111	-	small nucleolar RNA, H/ACA box 111	snoRNA
6150	chrUn_gl000216	15301	15441	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5883	chr9	20320037	20320423	+	0	NA	Intergenic	Intergenic	91006	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
5056	chr6	142644945	142645160	+	0	NA	intron (NM_001032394, intron 2 of 24)	Tigger3c|DNA|TcMar-Tigger	21996	NM_001032395	57211	Hs.743302	NM_020455	ENSG00000112414	ADGRG6	APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR	adhesion G protein-coupled receptor G6	protein-coding
2548	chr17_gl000205_random	86755	87236	+	0	NA	Intergenic	Intergenic	-29628	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo
620	chr10	39152344	39152378	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	162634	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
5565	chr8	24392466	24392621	+	0	NA	intron (NR_125808, intron 1 of 5)	MIR3|SINE|MIR	13588	NR_125808	101929294	Hs.637673	NR_125808		LOC101929294	-	uncharacterized LOC101929294	ncRNA
5477	chr7	137075129	137075275	+	0	NA	3' UTR (NM_004717, exon 34 of 34)	3' UTR (NM_004717, exon 34 of 34)	-46466	NM_002825	5764	Hs.371249	NM_002825	ENSG00000105894	PTN	HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1	pleiotrophin	protein-coding
5356	chr7	95208040	95208318	+	0	NA	Intergenic	Intergenic	17746	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	pyruvate dehydrogenase kinase 4	protein-coding
5088	chr6	168548017	168548267	+	0	NA	Intergenic	Intergenic	-65905	NR_110312	79981	Hs.266746	NM_024919	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
4194	chr4	49637701	49637724	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	649053	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
2625	chr18	31383244	31383267	+	0	NA	Intergenic	Intergenic	224714	NM_030632	80816	Hs.464876	NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	additional sex combs like 3, transcriptional regulator	protein-coding
4090	chr4	8041212	8041495	+	0	NA	intron (NM_001130083, intron 9 of 20)	intron (NM_001130083, intron 9 of 20)	32390	NM_001286688	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
3400	chr2	222069323	222069343	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	367745	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
937	chr11	72019560	72019666	+	0	NA	exon (NM_001258392, exon 8 of 16)	exon (NM_001258392, exon 8 of 16)	-64393	NM_005169	401	Hs.731115	NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2a	protein-coding
5143	chr7	14429419	14429571	+	0	NA	intron (NM_145695, intron 20 of 23)	intron (NM_145695, intron 20 of 23)	-398445	NM_001163148	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding
3266	chr2	149822308	149822316	+	0	NA	intron (NM_004522, intron 11 of 25)	MIRb|SINE|MIR	17968	NR_111932	3800	Hs.435557	NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
730	chr10	101774396	101774632	+	0	NA	Intergenic	AluSx|SINE|Alu	-4804	NM_015221	23268	Hs.500771	NM_015221	ENSG00000107554	DNMBP	ARHGEF36|TUBA	dynamin binding protein	protein-coding
16	chr1	726217	726383	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-12232	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
921	chr11	62537543	62537871	+	0	NA	Intergenic	Intergenic	-1068	NM_006473	10629	Hs.714400	NM_006473	ENSG00000162227	TAF6L	PAF65A	TATA-box binding protein associated factor 6 like	protein-coding
3833	chr3	16524712	16524779	+	0	NA	intron (NM_015150, intron 2 of 9)	intron (NM_015150, intron 2 of 9)	30477	NM_015150	23180	Hs.98910	NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
5233	chr7	61083125	61083146	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1681299	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
2880	chr2	1168203	1168556	+	0	NA	intron (NM_018968, intron 7 of 16)	intron (NM_018968, intron 7 of 16)	-221301	NR_136151	101060391	Hs.120377	NR_136151		LOC101060391	-	uncharacterized LOC101060391	ncRNA
2311	chr16	52504521	52504549	+	0	NA	intron (NM_001080430, intron 1 of 6)	intron (NM_001080430, intron 1 of 6)	76271	NM_001080430	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
3631	chr21	10833373	10833501	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	157506	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
5002	chr6	109618022	109618397	+	0	NA	intron (NR_028595, intron 2 of 3)	intron (NR_028595, intron 2 of 3)	2703	NR_028595	221262	Hs.373914	NR_028595	ENSG00000203799	CCDC162P	C6orf184|C6orf185|CCDC162|bA425D10.3|bA425D10.7	coiled-coil domain containing 162, pseudogene	pseudo
2556	chr18	3593814	3593901	+	0	NA	promoter-TSS (NR_024101)	promoter-TSS (NR_024101)	-255	NR_024101	649446	Hs.19872	NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
6399	chrY	13808648	13808653	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	724739	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
994	chr11	112210124	112210263	+	0	NA	intron (NR_126004, intron 2 of 3)	intron (NR_126004, intron 2 of 3)	68721	NR_126004	283140	Hs.651827	NR_126004	ENSG00000250303	LOC283140	-	uncharacterized LOC283140	ncRNA
5360	chr7	105536632	105536668	+	0	NA	Intergenic	L1ME3B|LINE|L1	-19619	NM_152749	222255	Hs.745056	NM_020725	ENSG00000146776	ATXN7L1	ATXN7L4	ataxin 7 like 1	protein-coding
1786	chr14	68487487	68487664	+	0	NA	intron (NM_001321809, intron 7 of 11)	L1ME4a|LINE|L1	197266	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
6057	chr9	126405257	126405373	+	0	NA	intron (NM_024820, intron 9 of 20)	intron (NM_024820, intron 9 of 20)	-157414	NR_106972	102465688		NR_106972	ENSG00000274932	MIR7150	hsa-mir-7150	microRNA 7150	ncRNA
2320	chr16	52586637	52586787	+	0	NA	intron (NR_033920, intron 3 of 3)	intron (NR_033920, intron 3 of 3)	-4998	NM_001146188	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
2788	chr18	67302062	67302348	+	0	NA	intron (NM_152721, intron 3 of 7)	intron (NM_152721, intron 3 of 7)	165038	NR_134579	105372179	Hs.666269	NR_134579	ENSG00000264845	LOC105372179	-	uncharacterized LOC105372179	ncRNA
2440	chr17	25267099	25267212	+	0	NA	Intergenic	HSATII|Satellite|Satellite	149112	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
2140	chr15	97859652	97859658	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	205386	NR_120324	101927286	Hs.611279	NR_120324	ENSG00000259664	LOC101927286	-	uncharacterized LOC101927286	ncRNA
5257	chr7	61798190	61798514	+	0	NA	Intergenic	HSATII|Satellite|Satellite	966082	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
1523	chr13	95293942	95294256	+	0	NA	Intergenic	Intergenic	39995	NM_180989	160897	Hs.439363	NM_180989	ENSG00000152749	GPR180	ITR	G protein-coupled receptor 180	protein-coding
5613	chr8	43096382	43096488	+	0	NA	Intergenic	SAR|Satellite|Satellite	-51150	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
6405	chrY	13808972	13808982	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	724412	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4667	chr6	15949725	15949873	+	0	NA	Intergenic	Intergenic	-179518	NM_013262	29116	Hs.484738	NM_013262	ENSG00000007944	MYLIP	IDOL|MIR	myosin regulatory light chain interacting protein	protein-coding
3578	chr20	52226543	52226720	+	0	NA	intron (NR_134576, intron 1 of 2)	L1ME4a|LINE|L1	1738	NR_134576	105372672	Hs.259350	NR_134576	ENSG00000235415	LOC105372672	-	uncharacterized LOC105372672	ncRNA
93	chr1	40167586	40167868	+	0	NA	Intergenic	Intergenic	-10345	NM_016257	51440	Hs.743975	NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
5735	chr8	100110728	100110773	+	0	NA	intron (NM_152564, intron 4 of 61)	L1ME4a|LINE|L1	85256	NR_047582	157680	Hs.191540	NM_015243	ENSG00000132549	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B	protein-coding
3055	chr2	67840142	67840249	+	0	NA	Intergenic	Intergenic	212499	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
3040	chr2	59610783	59611202	+	0	NA	Intergenic	Intergenic	166149	NR_110219	101927285	Hs.570209	NR_110219	ENSG00000222030	LINC01793	-	long intergenic non-protein coding RNA 1793	ncRNA
2429	chr17	25263964	25264028	+	0	NA	Intergenic	Intergenic	152271	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
374	chr1	183517183	183517335	+	0	NA	intron (NM_001331007, intron 19 of 23)	intron (NM_001331007, intron 19 of 23)	42480	NM_001190794	4688	Hs.587558	NM_000433	ENSG00000116701	NCF2	NCF-2|NOXA2|P67-PHOX|P67PHOX	neutrophil cytosolic factor 2	protein-coding
2790	chr18	67302445	67302741	+	0	NA	intron (NM_152721, intron 3 of 7)	LTR16E2|LTR|ERVL	165426	NR_134579	105372179	Hs.666269	NR_134579	ENSG00000264845	LOC105372179	-	uncharacterized LOC105372179	ncRNA
3876	chr3	97661772	97662072	+	0	NA	3' UTR (NM_032778, exon 10 of 10)	3' UTR (NM_032778, exon 10 of 10)	29373	NM_001261829	84864	Hs.570562	NM_032778	ENSG00000170854	RIOX2	JMJD10|MDIG|MINA|MINA53|NO52|ROX	ribosomal oxygenase 2	protein-coding
429	chr1	208274130	208274314	+	0	NA	intron (NM_025179, intron 5 of 31)	intron (NM_025179, intron 5 of 31)	143443	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
1306	chr12	105024431	105024448	+	0	NA	intron (NM_001173982, intron 2 of 2)	intron (NM_001173982, intron 2 of 2)	39028	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
4576	chr5	146000258	146000547	+	0	NA	intron (NM_181675, intron 7 of 9)	intron (NM_181675, intron 7 of 9)	-104726	NM_194251	134391	Hs.483732	NM_194251	ENSG00000173250	GPR151	GALR4|GALRL|GPCR|PGR7	G protein-coupled receptor 151	protein-coding
3688	chr21	37069448	37069720	+	0	NA	Intergenic	Intergenic	-23429	NR_030414	768219		NR_030414	ENSG00000211590	MIR802	MIRN802|hsa-mir-802	microRNA 802	ncRNA
3767	chr22	23534623	23534861	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	12190	NM_004327	613	Hs.517461	NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR, RhoGEF and GTPase activating protein	protein-coding
3097	chr2	89850150	89850233	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	738307	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
1328	chr12	107524811	107525118	+	0	NA	Intergenic	Intergenic	-37329	NM_004075	1407	Hs.151573	NM_004075	ENSG00000008405	CRY1	PHLL1	cryptochrome circadian clock 1	protein-coding
4049	chr3	182314452	182314848	+	0	NA	Intergenic	Intergenic	-89738	NR_134941	105374244	Hs.130176	NR_134941	ENSG00000244247	LINC01995	-	long intergenic non-protein coding RNA 1995	ncRNA
409	chr1	204283150	204283531	+	0	NA	intron (NM_014935, intron 1 of 22)	intron (NM_014935, intron 1 of 22)	45717	NM_014935	22874	Hs.253146	NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
1091	chr12	3904335	3904456	+	0	NA	Intergenic	Intergenic	-42029	NM_032680	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
5353	chr7	95207696	95207846	+	0	NA	Intergenic	Intergenic	18154	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	pyruvate dehydrogenase kinase 4	protein-coding
4594	chr5	153457676	153457943	+	0	NA	Intergenic	MIRb|SINE|MIR	39290	NM_001135037	4238	Hs.432818	NM_005927	ENSG00000037749	MFAP3	-	microfibrillar associated protein 3	protein-coding
812	chr11	20510123	20510227	+	0	NA	intron (NM_005788, intron 13 of 15)	intron (NM_005788, intron 13 of 15)	101099	NM_005788	10196	Hs.152337	NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
1958	chr14	97444763	97444856	+	0	NA	Intergenic	Intergenic	34893	NR_104113	145249		NR_104113	ENSG00000225163	LINC00618	C14orf63	long intergenic non-protein coding RNA 618	ncRNA
1962	chr14	99099740	99099895	+	0	NA	Intergenic	Intergenic	-78133	NM_182560	283598	Hs.448754	NM_182560	ENSG00000176605	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
489	chr1	226911346	226911410	+	0	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	15498	NM_002221	3707	Hs.528087	NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
585	chr10	39079571	39079687	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	89902	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
3711	chr21	40357865	40357988	+	0	NA	Intergenic	Intergenic	-8226	NR_109962	101928435	Hs.385528	NR_109962	ENSG00000232837	LINC01700	-	long intergenic non-protein coding RNA 1700	ncRNA
1392	chr12	125071118	125071218	+	0	NA	Intergenic	L1ME3A|LINE|L1	-19158	NM_001206654	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
4633	chr6	1757179	1757418	+	0	NA	intron (NM_001500, intron 7 of 10)	intron (NM_001500, intron 7 of 10)	146617	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
1080	chr11	134242887	134243256	+	0	NA	intron (NM_138342, intron 15 of 19)	intron (NM_138342, intron 15 of 19)	38741	NM_054025	27087	Hs.381050	NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
4724	chr6	21750202	21750443	+	0	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	83647	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
2819	chr19	13023041	13023223	+	0	NA	intron (NM_001105578, intron 2 of 5)	intron (NM_001105578, intron 2 of 5)	6954	NM_001105578	256126	Hs.655173	NM_001105578	ENSG00000161860	SYCE2	CESC1	synaptonemal complex central element protein 2	protein-coding
732	chr10	103124568	103124790	+	0	NA	intron (NM_003939, intron 1 of 13)	U2|snRNA|snRNA	10889	NM_033637	8945	Hs.643802	NM_003939	ENSG00000166167	BTRC	BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP	beta-transducin repeat containing E3 ubiquitin protein ligase	protein-coding
5480	chr7	138310916	138311045	+	0	NA	intron (NM_001331192, intron 9 of 12)	intron (NM_001331192, intron 9 of 12)	37989	NM_001331192	136306	Hs.99414	NM_174959	ENSG00000157703	SVOPL	-	SVOP like	protein-coding
4653	chr6	7548360	7548917	+	0	NA	intron (NM_001008844, intron 1 of 23)	intron (NM_001008844, intron 1 of 23)	6830	NM_004415	1832	Hs.519873	NM_004415	ENSG00000096696	DSP	DCWHKTA|DP	desmoplakin	protein-coding
2233	chr16	33895936	33896114	+	0	NA	Intergenic	HSATII|Satellite|Satellite	66478	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
622	chr10	39152616	39152632	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	162897	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
5389	chr7	107999355	107999387	+	0	NA	intron (NM_005010, intron 2 of 27)	intron (NM_005010, intron 2 of 27)	97470	NM_001193584	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
6200	chrUn_gl000216	145602	145753	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
970	chr11	92628577	92628889	+	0	NA	3' UTR (NM_001008781, exon 25 of 25)	3' UTR (NM_001008781, exon 25 of 25)	20061	NR_135091	105369431	Hs.532389	NR_135091		LOC105369431	-	uncharacterized LOC105369431	ncRNA
2381	chr16	82363445	82363467	+	0	NA	Intergenic	Intergenic	-159627	NM_005792	10200	Hs.344400	NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
2771	chr18	60822665	60822858	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	163852	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding
1416	chr12	130035216	130035392	+	0	NA	intron (NM_133448, intron 2 of 8)	intron (NM_133448, intron 2 of 8)	342158	NR_110058	101927735	Hs.569212	NR_110058	ENSG00000256699	LOC101927735	-	uncharacterized LOC101927735	ncRNA
2256	chr16	33975617	33975916	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-13263	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
5718	chr8	94457488	94457573	+	0	NA	intron (NR_033858, intron 7 of 10)	intron (NR_033858, intron 7 of 10)	255131	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	ncRNA
1658	chr14	30969450	30969500	+	0	NA	Intergenic	Intergenic	-58854	NM_001308097	55632	Hs.509008	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
5768	chr8	109773081	109773379	+	0	NA	intron (NR_136411, intron 1 of 3)	intron (NR_136411, intron 1 of 3)	26614	NM_153015	157753	Hs.99439	NM_153015	ENSG00000164841	TMEM74	NET36	transmembrane protein 74	protein-coding
2057	chr15	60865070	60865272	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	19536	NM_134262	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
1237	chr12	92759614	92759740	+	0	NA	Intergenic	Intergenic	-55630	NR_027932	574028	Hs.730377	NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	protein-coding
1635	chr14	21788098	21788258	+	0	NA	exon (NM_020366, exon 11 of 24)	exon (NM_020366, exon 11 of 24)	32042	NM_020366	57096	Hs.126035	NM_020366	ENSG00000092200	RPGRIP1	CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding
5315	chr7	69897040	69897564	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	-700221	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
2361	chr16	73870425	73870684	+	0	NA	Intergenic	Intergenic	378866	NR_104657	101928035	Hs.39557	NR_104657	ENSG00000261404	LOC101928035	-	uncharacterized LOC101928035	ncRNA
5691	chr8	85165453	85165536	+	0	NA	intron (NM_001100391, intron 1 of 8)	AluSg|SINE|Alu	68394	NM_001100391	138046	Hs.121663	NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
5089	chr6	168548268	168548277	+	0	NA	Intergenic	Intergenic	-66035	NR_110312	79981	Hs.266746	NM_024919	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
2490	chr17	55129105	55129433	+	0	NA	Intergenic	Intergenic	6430	NR_002818	376412	Hs.132299	NR_002818	ENSG00000261192	RNF126P1	-	ring finger protein 126 pseudogene 1	pseudo
2563	chr18	3692198	3692562	+	0	NA	intron (NM_001308390, intron 4 of 10)	intron (NM_001308390, intron 4 of 10)	88645	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
3086	chr2	85940728	85940901	+	0	NA	Intergenic	Intergenic	19400	NM_006433	10578	Hs.105806	NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
5000	chr6	109617537	109617824	+	0	NA	intron (NR_028595, intron 2 of 3)	intron (NR_028595, intron 2 of 3)	2174	NR_028595	221262	Hs.373914	NR_028595	ENSG00000203799	CCDC162P	C6orf184|C6orf185|CCDC162|bA425D10.3|bA425D10.7	coiled-coil domain containing 162, pseudogene	pseudo
4749	chr6	24584215	24584549	+	0	NA	promoter-TSS (NM_001252328)	promoter-TSS (NM_001252328)	-927	NM_001252328	9856	Hs.26441	NM_014809	ENSG00000137261	KIAA0319	DYLX2|DYX2|NMIG	KIAA0319	protein-coding
4333	chr4	140927193	140927356	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	147959	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
5194	chr7	39124302	39124333	+	0	NA	intron (NM_001166018, intron 2 of 10)	intron (NM_001166018, intron 2 of 10)	-71150	NR_138047	100689074	Hs.675876	NR_138047		POU6F2-AS2	-	POU6F2 antisense RNA 2	ncRNA
4929	chr6	90709125	90709208	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	104978	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
3991	chr3	159600954	159601118	+	0	NA	intron (NM_001197113, intron 6 of 10)	intron (NM_001197113, intron 6 of 10)	43386	NM_001197109	29970	Hs.134665	NM_014575	ENSG00000151967	SCHIP1	SCHIP-1	schwannomin interacting protein 1	protein-coding
4461	chr5	49440770	49440949	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	296375	NM_198449	133418	Hs.561411	NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
270	chr1	121353461	121353791	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	92716	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
2840	chr19	31296368	31296428	+	0	NA	Intergenic	Intergenic	433098	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
5037	chr6	134996272	134996596	+	0	NA	Intergenic	Intergenic	-135291	NR_125855	101928304	Hs.555076	NR_125855		LOC101928304	-	uncharacterized LOC101928304	ncRNA
1602	chr13	110359607	110360075	+	0	NA	Intergenic	Intergenic	-20780	NR_103846	101409253	Hs.578072	NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
4226	chr4	67139176	67139362	+	0	NA	Intergenic	Intergenic	-3273	NR_031673	100302177		NR_031673	ENSG00000221563	MIR1269A	MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a	microRNA 1269a	ncRNA
2007	chr15	44213038	44213154	+	0	NA	intron (NM_001322951, intron 1 of 14)	intron (NM_001322951, intron 1 of 14)	-42727	NR_003571	728758	Hs.658099	NR_003571		PIN4P1	-	peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1	pseudo
1332	chr12	112547032	112547140	+	0	NA	promoter-TSS (NM_024953)	promoter-TSS (NM_024953)	-451	NM_024953	80018	Hs.530941	NM_024953	ENSG00000111300	NAA25	C12orf30|MDM20|NAP1	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding
5409	chr7	115372123	115372284	+	0	NA	Intergenic	Intergenic	236164	NM_001244583	22797	Hs.125962	NM_012252	ENSG00000105967	TFEC	TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L	transcription factor EC	protein-coding
5156	chr7	26458953	26459093	+	0	NA	intron (NR_015364, intron 1 of 4)	intron (NR_015364, intron 1 of 4)	15915	NR_015364	441204	Hs.587432	NR_015364		LOC441204	-	uncharacterized LOC441204	ncRNA
6389	chrY	13688148	13688244	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	845193	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5139	chr7	13960214	13960322	+	0	NA	intron (NM_004956, intron 9 of 13)	intron (NM_004956, intron 9 of 13)	65871	NM_001163150	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding
5341	chr7	86476098	86476286	+	0	NA	intron (NM_000840, intron 4 of 5)	LTR40b|LTR|ERVL	119099	NM_152748	222223	Hs.208093	NM_152748	ENSG00000164659	KIAA1324L	EIG121L	KIAA1324 like	protein-coding
1399	chr12	125566020	125566675	+	0	NA	intron (NM_023928, intron 3 of 17)	intron (NM_023928, intron 3 of 17)	16434	NM_001319839	65985	Hs.656073	NM_023928	ENSG00000081760	AACS	ACSF1|SUR-5	acetoacetyl-CoA synthetase	protein-coding
6395	chrY	13800990	13800998	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	732395	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
6464	chrY	13867973	13868065	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	665370	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
740	chr10	112896800	112897158	+	0	NA	Intergenic	Intergenic	60189	NM_000681	150	Hs.249159	NM_000681	ENSG00000150594	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32	adrenoceptor alpha 2A	protein-coding
1117	chr12	14537865	14538081	+	0	NA	promoter-TSS (NM_181352)	promoter-TSS (NM_181352)	-25	NM_181352	55729	Hs.504856	NM_018179	ENSG00000171681	ATF7IP	AM|ATF-IP|MCAF|MCAF1|p621	activating transcription factor 7 interacting protein	protein-coding
103	chr1	42402183	42402335	+	0	NA	intron (NR_038261, intron 1 of 3)	Tigger15a|DNA|TcMar-Tigger	-17763	NR_038260	59269	Hs.403972	NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
3434	chr2	236826154	236826174	+	0	NA	intron (NM_014914, intron 11 of 16)	intron (NM_014914, intron 11 of 16)	250488	NM_001485	2637	Hs.184945	NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
5641	chr8	62602595	62602754	+	0	NA	promoter-TSS (NM_001164750)	promoter-TSS (NM_001164750)	-266	NM_032467	444	Hs.332422	NM_004318	ENSG00000198363	ASPH	AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin	aspartate beta-hydroxylase	protein-coding
871	chr11	51572286	51572638	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	57180	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
5374	chr7	107352953	107353254	+	0	NA	intron (NM_000441, intron 20 of 20)	intron (NM_000441, intron 20 of 20)	30974	NR_144536	101927974	Hs.432792	NR_144536		LOC101927974	-	uncharacterized LOC101927974	ncRNA
3393	chr2	221650295	221650359	+	0	NA	Intergenic	L1MD2|LINE|L1	786751	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
5725	chr8	95971454	95971664	+	0	NA	Intergenic	Intergenic	-9944	NM_001135733	94241	Hs.492261	NM_033285	ENSG00000164938	TP53INP1	SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1	tumor protein p53 inducible nuclear protein 1	protein-coding
4528	chr5	124611080	124611265	+	0	NA	intron (NR_109882, intron 4 of 5)	intron (NR_109882, intron 4 of 5)	-217782	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
2039	chr15	58536312	58536443	+	0	NA	Intergenic	Intergenic	105982	NM_001320635	366	Hs.104624	NM_020980	ENSG00000103569	AQP9	AQP-9|HsT17287|SSC1|T17287	aquaporin 9	protein-coding
6039	chr9	113470053	113470374	+	0	NA	intron (NM_005592, intron 5 of 13)	intron (NM_005592, intron 5 of 13)	39162	NM_001166280	4593	Hs.521653	NM_005592	ENSG00000030304	MUSK	CMS9|FADS	muscle associated receptor tyrosine kinase	protein-coding
6212	chrUn_gl000216	163210	163761	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
4891	chr6	80520546	80520577	+	0	NA	intron (NR_131786, intron 2 of 4)	intron (NR_131786, intron 2 of 4)	1402	NR_131786	89758	Hs.288213	NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
5411	chr7	120953653	120954081	+	0	NA	Intergenic	Intergenic	-11554	NM_016087	51384	Hs.272375	NM_016087	ENSG00000002745	WNT16	-	Wnt family member 16	protein-coding
3826	chr3	15326331	15326338	+	0	NA	intron (NM_001018009, intron 3 of 8)	intron (NM_001018009, intron 3 of 8)	30643	NR_046084	100505696	Hs.745026	NR_046084	ENSG00000224660	SH3BP5-AS1	-	SH3BP5 antisense RNA 1	ncRNA
5178	chr7	30183290	30183716	+	0	NA	intron (NM_152793, intron 1 of 2)	intron (NM_152793, intron 1 of 2)	8951	NM_152793	222166	Hs.200100	NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
4042	chr3	182082503	182082738	+	0	NA	Intergenic	Intergenic	121530	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA
3363	chr2	210360751	210360797	+	0	NA	intron (NM_001039538, intron 1 of 14)	intron (NM_001039538, intron 1 of 14)	72003	NM_001039538	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding
1219	chr12	78139784	78139855	+	0	NA	Intergenic	Intergenic	-85250	NM_001024383	89795	Hs.655301	NM_014903	ENSG00000067798	NAV3	POMFIL1|STEERIN3|unc53H3	neuron navigator 3	protein-coding
3774	chr22	28728969	28729171	+	0	NA	intron (NM_001145418, intron 2 of 22)	intron (NM_001145418, intron 2 of 22)	-126787	NR_106713	102466081		NR_106713	ENSG00000276162	MIR5739	hsa-mir-5739	microRNA 5739	ncRNA
2534	chr17	75733848	75733976	+	0	NA	Intergenic	MER74A|LTR|ERVL	-9271	NR_104134	100132174	Hs.640110	NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
5525	chr7	158831632	158831859	+	0	NA	intron (NM_001304522, intron 4 of 10)	intron (NM_001304522, intron 4 of 10)	30700	NR_024394	154822	Hs.544783	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	ncRNA
1704	chr14	42643206	42643531	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	567309	NM_152447	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
6173	chrUn_gl000216	43469	43490	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5500	chr7	146332483	146332686	+	0	NA	intron (NM_014141, intron 1 of 23)	intron (NM_014141, intron 1 of 23)	462117	NR_110829	101928700	Hs.571218	NR_110829	ENSG00000236795	LOC101928700	-	uncharacterized LOC101928700	ncRNA
750	chr11	7618851	7619168	+	0	NA	intron (NM_001256568, intron 2 of 20)	intron (NM_001256568, intron 2 of 20)	592	NM_001256568	8495	Hs.655714	NM_003621	ENSG00000166387	PPFIBP2	Cclp1	PPFIA binding protein 2	protein-coding
688	chr10	77977728	77978118	+	0	NA	intron (NR_131178, intron 6 of 7)	intron (NR_131178, intron 6 of 7)	435404	NM_032024	83938	Hs.118161	NM_032024	ENSG00000148655	C10orf11	CDA017	chromosome 10 open reading frame 11	protein-coding
1749	chr14	61085463	61085616	+	0	NA	Intergenic	AluSx|SINE|Alu	-20395	NR_126480	104548971		NR_126480		SALRNA1	SAL-RNA1|XLOC_023166	senescence associated long non-coding RNA 1	ncRNA
1126	chr12	16758679	16758843	+	0	NA	promoter-TSS (NM_001243611)	promoter-TSS (NM_001243611)	143	NM_001243612	55885	Hs.504908	NM_018640	ENSG00000048540	LMO3	RBTN3|RBTNL2|RHOM3|Rhom-3	LIM domain only 3	protein-coding
2128	chr15	93374694	93374856	+	0	NA	Intergenic	Intergenic	36061	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
3926	chr3	123152511	123152600	+	0	NA	intron (NM_183357, intron 1 of 20)	intron (NM_183357, intron 1 of 20)	14837	NM_183357	111	Hs.593292	NM_183357	ENSG00000173175	ADCY5	AC5|FDFM	adenylate cyclase 5	protein-coding
1534	chr13	98252583	98252623	+	0	NA	Intergenic	AluJb|SINE|Alu	166128	NM_021033	5911	Hs.508480	NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
2570	chr18	3721250	3721276	+	0	NA	intron (NM_001308390, intron 4 of 10)	intron (NM_001308390, intron 4 of 10)	117528	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
6343	chrX	150993631	150993656	+	0	NA	Intergenic	Intergenic	85912	NR_136578	105373368	Hs.256904	NR_136578		LOC105373368	-	uncharacterized LOC105373368	ncRNA
1915	chr14	89743714	89743909	+	0	NA	intron (NM_001085471, intron 4 of 6)	intron (NM_001085471, intron 4 of 6)	139643	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
3729	chr22	16850004	16850054	+	0	NA	Intergenic	HSATII|Satellite|Satellite	223671	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
4523	chr5	123919935	123920109	+	0	NA	Intergenic	Intergenic	-145809	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
2737	chr18	53073044	53073210	+	0	NA	intron (NM_001330604, intron 5 of 19)	intron (NM_001330604, intron 5 of 19)	-1901	NM_001306208	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
804	chr11	18010176	18010538	+	0	NA	intron (NM_012139, intron 7 of 10)	intron (NM_012139, intron 7 of 10)	24352	NM_012139	26297	Hs.32470	NM_012139	ENSG00000129158	SERGEF	DELGEF|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding
83	chr1	37858911	37859198	+	0	NA	Intergenic	MIRb|SINE|MIR	80990	NR_038842	728431	Hs.380738	NR_038842	ENSG00000233621	LINC01137	-	long intergenic non-protein coding RNA 1137	ncRNA
5728	chr8	98790289	98790422	+	0	NA	intron (NM_018407, intron 1 of 6)	intron (NM_018407, intron 1 of 6)	2546	NM_018407	55353	Hs.492314	NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
5514	chr7	149630543	149630780	+	0	NA	Intergenic	Charlie20a|DNA|hAT-Charlie	-59710	NR_027040	401431	Hs.556998	NM_001008745	ENSG00000204934	ATP6V0E2-AS1	-	ATP6V0E2 antisense RNA 1	ncRNA
3375	chr2	211546582	211546667	+	0	NA	Intergenic	Intergenic	64329	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
6183	chrUn_gl000216	75497	75599	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
6422	chrY	13826031	13826072	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	707338	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5962	chr9	82266051	82266478	+	0	NA	intron (NM_007005, intron 6 of 19)	intron (NM_007005, intron 6 of 19)	79576	NR_104239	7091	Hs.444213	NM_007005	ENSG00000106829	TLE4	BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4|Grg-4	transducin like enhancer of split 4	protein-coding
4503	chr5	93227761	93228086	+	0	NA	intron (NR_028080, intron 4 of 8)	intron (NR_028080, intron 4 of 8)	-150614	NM_153216	134187	Hs.678995	NM_153216	ENSG00000248483	POU5F2	SPRM-1	POU domain class 5, transcription factor 2	protein-coding
1385	chr12	122596320	122596462	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	-55875	NM_152759	254050	Hs.374856	NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
5168	chr7	28612516	28612695	+	0	NA	intron (NM_182899, intron 4 of 9)	intron (NM_182899, intron 4 of 9)	-112993	NM_001011666	9586	Hs.437075	NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5	cAMP responsive element binding protein 5	protein-coding
2672	chr18	37779062	37779166	+	0	NA	Intergenic	Intergenic	132864	NR_110791	101927900	Hs.385522	NR_110791	ENSG00000261715	LINC01477	-	long intergenic non-protein coding RNA 1477	ncRNA
4156	chr4	49133098	49133351	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	144565	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
1818	chr14	70477877	70478067	+	0	NA	intron (NM_001034852, intron 8 of 11)	intron (NM_001034852, intron 8 of 11)	68962	NM_182936	6547	Hs.337696	NM_033262	ENSG00000100678	SLC8A3	NCX3	solute carrier family 8 member A3	protein-coding
2094	chr15	73668323	73668646	+	0	NA	Intergenic	Intergenic	-6879	NM_005477	10021	Hs.86941	NM_005477	ENSG00000138622	HCN4	SSS2	hyperpolarization activated cyclic nucleotide gated potassium channel 4	protein-coding
962	chr11	78066114	78066289	+	0	NA	intron (NM_080491, intron 1 of 9)	MIR3|SINE|MIR	-13275	NM_012296	9846	Hs.429434	NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
1837	chr14	75876654	75877111	+	0	NA	Intergenic	Intergenic	-17627	NM_001135047	122953	Hs.196482	NM_130469	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
3778	chr22	29218888	29219057	+	0	NA	Intergenic	Intergenic	-22412	NM_005080	7494	Hs.437638	NM_005080	ENSG00000100219	XBP1	TREB-5|TREB5|XBP-1|XBP2	X-box binding protein 1	protein-coding
143	chr1	58143836	58144034	+	0	NA	intron (NM_021080, intron 2 of 16)	intron (NM_021080, intron 2 of 16)	-182280	NR_104363	101926890	Hs.662207	NR_104362	ENSG00000226759	DAB1-AS1	-	DAB1 antisense RNA 1	ncRNA
3090	chr2	89830456	89830456	+	0	NA	Intergenic	Intergenic	718572	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
4020	chr3	176638107	176638189	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-103359	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
6068	chr9	129200732	129200946	+	0	NA	intron (NM_033446, intron 7 of 9)	intron (NM_033446, intron 7 of 9)	-28056	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	non-protein coding RNA, repressor of NFAT	ncRNA
2323	chr16	53125635	53125819	+	0	NA	intron (NM_025134, intron 1 of 38)	CT-rich|Low_complexity|Low_complexity	36782	NM_025134	80205	Hs.59159	NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
6157	chrUn_gl000216	19503	19624	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
3049	chr2	64558813	64558922	+	0	NA	Intergenic	Intergenic	-9026	NR_039632	100616265		NR_039632	ENSG00000283222	MIR4433A	MIR4433|hsa-mir-4433a	microRNA 4433a	ncRNA
2822	chr19	13137274	13137326	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	1905	NM_001271043	4784	Hs.257970	NM_002501	ENSG00000008441	NFIX	CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
1051	chr11	126848724	126849244	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	9454	NR_036126	100422918		NR_036126	ENSG00000266215	MIR3167	-	microRNA 3167	ncRNA
3033	chr2	56749932	56750195	+	0	NA	Intergenic	Intergenic	-337158	NR_125368	100129434	Hs.580330	NR_125368		LOC100129434	-	uncharacterized LOC100129434	ncRNA
518	chr10	501164	501336	+	0	NA	intron (NM_014974, intron 3 of 36)	intron (NM_014974, intron 3 of 36)	-173224	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
4802	chr6	46348251	46348525	+	0	NA	intron (NM_001251973, intron 2 of 4)	intron (NM_001251973, intron 2 of 4)	-54759	NM_005822	10231	Hs.440168	NM_005822	ENSG00000172348	RCAN2	CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4	regulator of calcineurin 2	protein-coding
5268	chr7	61980607	61980625	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	783818	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
2914	chr2	5197702	5197918	+	0	NA	Intergenic	Intergenic	-493998	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
2906	chr2	4406584	4406874	+	0	NA	Intergenic	Intergenic	297083	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
1211	chr12	67986475	67986646	+	0	NA	Intergenic	MER63B|DNA|hAT-Blackjack	-55952	NM_006482	8445	Hs.173135	NM_003583	ENSG00000127334	DYRK2	-	dual specificity tyrosine phosphorylation regulated kinase 2	protein-coding
6025	chr9	108200439	108200612	+	0	NA	intron (NM_001330731, intron 15 of 15)	intron (NM_001330731, intron 15 of 15)	-9790	NM_001330739	83856	Hs.136901	NM_031919	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1 like	protein-coding
3221	chr2	112940317	112940655	+	0	NA	exon (NM_001128165, exon 5 of 7)	exon (NM_001128165, exon 5 of 7)	44524	NM_153214	129804	Hs.437696	NM_153214	ENSG00000144152	FBLN7	TM14	fibulin 7	protein-coding
2852	chr19	44032546	44032742	+	0	NA	Intergenic	LTR65|LTR|ERV1	-1236	NM_001320867	23474	Hs.7486	NM_014297	ENSG00000105755	ETHE1	HSCO|YF13H12	ETHE1, persulfide dioxygenase	protein-coding
2732	chr18	51773342	51773493	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-22259	NM_015832	8932	Hs.25674	NM_003927	ENSG00000134046	MBD2	DMTase|NY-CO-41	methyl-CpG binding domain protein 2	protein-coding
2155	chr16	4102635	4103213	+	0	NA	intron (NM_001116, intron 2 of 10)	intron (NM_001116, intron 2 of 10)	63262	NM_001116	115	Hs.391860	NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
2991	chr2	41950200	41950294	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-154448	NR_033996	388942	Hs.631883	NR_033996	ENSG00000214691	LINC01913	-	long intergenic non-protein coding RNA 1913	ncRNA
2399	chr16	90062061	90062156	+	0	NA	non-coding (NR_003227, exon 10 of 10)	non-coding (NR_003227, exon 10 of 10)	14421	NM_024043	79007	Hs.301394	NM_024043	ENSG00000003249	DBNDD1	-	dysbindin domain containing 1	protein-coding
1542	chr13	99053709	99053983	+	0	NA	intron (NM_005766, intron 13 of 26)	intron (NM_005766, intron 13 of 26)	120533	NM_003576	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
1711	chr14	45181387	45181562	+	0	NA	Intergenic	Intergenic	-185033	NM_001017923	122525	Hs.82098	NM_001017923	ENSG00000179476	C14orf28	DRIP-1|DRIP1|c14_5270	chromosome 14 open reading frame 28	protein-coding
4780	chr6	37275738	37275903	+	0	NA	intron (NM_017772, intron 8 of 12)	intron (NM_017772, intron 8 of 12)	-45928	NR_046399	9025	Hs.485278	NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding
2836	chr19	24620145	24620197	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-273922	NR_003603	100101266	Hs.149312	NR_003603	ENSG00000268442	HAVCR1P1	-	hepatitis A virus cellular receptor 1 pseudogene 1	pseudo
2102	chr15	74789960	74790282	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	36515	NR_120377	440288	Hs.611046	NR_038448	ENSG00000247240	UBL7-AS1	-	UBL7 antisense RNA 1 (head to head)	ncRNA
3720	chr21	41426360	41426748	+	0	NA	intron (NM_001389, intron 29 of 32)	intron (NM_001389, intron 29 of 32)	157804	NR_039917	100616148		NR_039917	ENSG00000263973	MIR4760	-	microRNA 4760	ncRNA
478	chr1	224200129	224200345	+	0	NA	intron (NR_136593, intron 2 of 4)	intron (NR_136593, intron 2 of 4)	19805	NR_136593	100287497	Hs.568390	NR_136590		LOC100287497	-	septin 7 pseudogene	pseudo
3242	chr2	135597064	135597237	+	0	NA	intron (NM_138326, intron 1 of 9)	intron (NM_138326, intron 1 of 9)	964	NM_001307983	130013	Hs.655728	NM_138326	ENSG00000153086	ACMSD	-	aminocarboxymuconate semialdehyde decarboxylase	protein-coding
384	chr1	184875064	184875256	+	0	NA	intron (NM_052966, intron 1 of 13)	AluJo|SINE|Alu	68558	NM_052966	116496	Hs.518662	NM_052966	ENSG00000135842	FAM129A	C1orf24|GIG39|NIBAN	family with sequence similarity 129 member A	protein-coding
5628	chr8	59878867	59879152	+	0	NA	intron (NM_014729, intron 1 of 8)	intron (NM_014729, intron 1 of 8)	152758	NM_014729	9760	Hs.491805	NM_014729	ENSG00000198846	TOX	TOX1	thymocyte selection associated high mobility group box	protein-coding
4052	chr3	183095580	183096084	+	0	NA	intron (NM_015078, intron 3 of 29)	intron (NM_015078, intron 3 of 29)	50225	NM_015078	23101	Hs.208267	NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
836	chr11	27195625	27195845	+	0	NA	intron (NR_125766, intron 2 of 4)	intron (NR_125766, intron 2 of 4)	44580	NR_125768	103695435	Hs.196133	NR_125766	ENSG00000254560	BBOX1-AS1	-	BBOX1 antisense RNA 1	ncRNA
5956	chr9	80204254	80204321	+	0	NA	intron (NM_004297, intron 1 of 6)	intron (NM_004297, intron 1 of 6)	58945	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	G protein subunit alpha 14	protein-coding
4028	chr3	177307674	177307748	+	0	NA	intron (NR_047568, intron 2 of 3)	intron (NR_047568, intron 2 of 3)	148002	NR_047568	100505566	Hs.581170	NR_047568		LINC00578	-	long intergenic non-protein coding RNA 578	ncRNA
3068	chr2	68149407	68149867	+	0	NA	Intergenic	Intergenic	-96943	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
3989	chr3	158998617	158998802	+	0	NA	intron (NM_001197108, intron 1 of 6)	intron (NM_001197108, intron 1 of 6)	-1726	NR_037483	100500803		NR_037483	ENSG00000263634	MIR3919	-	microRNA 3919	ncRNA
1735	chr14	57484962	57485059	+	0	NA	Intergenic	L2a|LINE|L2	205109	NR_029385	100309464	Hs.637962	NR_029385	ENSG00000248550	OTX2-AS1	OTX2OS1	OTX2 antisense RNA 1 (head to head)	ncRNA
5250	chr7	61791717	61791719	+	0	NA	Intergenic	HSATII|Satellite|Satellite	972716	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
3512	chr20	26317763	26317841	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-127933	NR_040095	284801	Hs.370699	NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
2030	chr15	54129472	54129862	+	0	NA	Intergenic	Intergenic	-74592	NR_102334	256764	Hs.122125	NM_182758	ENSG00000166415	WDR72	AI2A3	WD repeat domain 72	protein-coding
2286	chr16	48160720	48161277	+	0	NA	intron (NM_033226, intron 9 of 28)	intron (NM_033226, intron 9 of 28)	19683	NM_033226	94160	Hs.410111	NM_033226	ENSG00000140798	ABCC12	MRP9	ATP binding cassette subfamily C member 12	protein-coding
1595	chr13	108491141	108491377	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	-3453	NR_046848	100874375	Hs.653972	NR_046848		FAM155A-IT1	-	FAM155A intronic transcript 1	ncRNA
5906	chr9	66834777	66835277	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-87940	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
1750	chr14	61532364	61532474	+	0	NA	intron (NM_001172702, intron 15 of 16)	intron (NM_001172702, intron 15 of 16)	84454	NR_033344	145389	Hs.200738	NM_153811	ENSG00000139974	SLC38A6	NAT-1|SNAT6	solute carrier family 38 member 6	protein-coding
5664	chr8	73735383	73735605	+	0	NA	intron (NM_004770, intron 2 of 2)	intron (NM_004770, intron 2 of 2)	91214	NR_110656	101926908	Hs.680588	NR_110656	ENSG00000253726	LOC101926908	-	uncharacterized LOC101926908	ncRNA
5971	chr9	86064634	86064761	+	0	NA	intron (NM_001244959, intron 1 of 14)	intron (NM_001244959, intron 1 of 14)	17960	NM_001244960	257019	Hs.127535	NM_174938	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
4715	chr6	21390745	21390978	+	0	NA	Intergenic	Intergenic	121262	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
1610	chr13	111152664	111152902	+	0	NA	intron (NM_001846, intron 40 of 47)	intron (NM_001846, intron 40 of 47)	7743	NR_046583	100874203	Hs.508716	NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	ncRNA
779	chr11	13182041	13182167	+	0	NA	Intergenic	Intergenic	-117170	NM_001030273	406	Hs.65734	NM_001178	ENSG00000133794	ARNTL	BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	aryl hydrocarbon receptor nuclear translocator like	protein-coding
343	chr1	168942755	168942787	+	0	NA	intron (NR_104091, intron 3 of 4)	LTR16A2|LTR|ERVL	113472	NR_104091	101978719	Hs.517849	NR_104091	ENSG00000203601	LINC00970	-	long intergenic non-protein coding RNA 970	ncRNA
3910	chr3	111761908	111762086	+	0	NA	intron (NM_001042575, intron 2 of 15)	Tigger3a|DNA|TcMar-Tigger	3532	NR_026734	344805	Hs.435490	NM_001042575	ENSG00000176040	TMPRSS7	-	transmembrane protease, serine 7	protein-coding
981	chr11	110822489	110822645	+	0	NA	Intergenic	Intergenic	-238655	NM_001258418	57569	Hs.6136	NM_020809	ENSG00000137727	ARHGAP20	RARHOGAP	Rho GTPase activating protein 20	protein-coding
697	chr10	80230593	80230762	+	0	NA	Intergenic	Intergenic	203592	NR_073447	414243	Hs.55047	NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
3001	chr2	45486628	45486759	+	0	NA	Intergenic	Intergenic	-4613	NR_033831	400952	Hs.468368	NR_033831	ENSG00000205054	LINC01121	UNQ6975	long intergenic non-protein coding RNA 1121	ncRNA
6230	chrUn_gl000225	130833	130833	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
5840	chr9	4500193	4500338	+	0	NA	intron (NM_004170, intron 1 of 11)	intron (NM_004170, intron 1 of 11)	9838	NM_004170	6505	Hs.444915	NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18	solute carrier family 1 member 1	protein-coding
857	chr11	48115492	48115848	+	0	NA	intron (NM_002843, intron 1 of 24)	intron (NM_002843, intron 1 of 24)	-2664	NR_036119	100423000		NR_036119	ENSG00000263693	MIR3161	-	microRNA 3161	ncRNA
1010	chr11	114030954	114031019	+	0	NA	intron (NM_001018011, intron 3 of 6)	intron (NM_001018011, intron 3 of 6)	99698	NM_001018011	7704	Hs.591945	NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
707	chr10	92970586	92970606	+	0	NA	intron (NM_001257101, intron 1 of 9)	intron (NM_001257101, intron 1 of 9)	-9312	NM_001256549	84333	Hs.500512	NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
5738	chr8	101429445	101429755	+	0	NA	Intergenic	Intergenic	34609	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
3310	chr2	173753901	173754051	+	0	NA	intron (NM_001282899, intron 1 of 27)	intron (NM_001282899, intron 1 of 27)	29210	NM_001282899	11069	Hs.470646	NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
4279	chr4	98238920	98239054	+	0	NA	Intergenic	Intergenic	-49090	NR_102713	101410545	Hs.628520	NR_102713	ENSG00000251620	STPG2-AS1	-	STPG2 antisense RNA 1	ncRNA
4077	chr3	196625787	196625792	+	0	NA	intron (NM_152699, intron 2 of 9)	AluY|SINE|Alu	31062	NM_152699	205564	Hs.240770	NM_152699	ENSG00000119231	SENP5	-	SUMO1/sentrin specific peptidase 5	protein-coding
261	chr1	117499317	117499572	+	0	NA	intron (NM_020440, intron 4 of 8)	intron (NM_020440, intron 4 of 8)	-44928	NM_004258	9398	Hs.654598	NM_004258	ENSG00000134256	CD101	EWI-101|IGSF2|V7	CD101 molecule	protein-coding
4083	chr4	918585	918915	+	0	NA	intron (NM_005255, intron 1 of 27)	intron (NM_005255, intron 1 of 27)	-7425	NM_001297427	84286	Hs.478936	NM_032326	ENSG00000127419	TMEM175	hTMEM175	transmembrane protein 175	protein-coding
4685	chr6	19892456	19892544	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	54899	NM_001546	3400	Hs.519601	NM_001546	ENSG00000172201	ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, HLH protein	protein-coding
2439	chr17	25267087	25267098	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	149175	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
3739	chr22	16852063	16852385	+	0	NA	Intergenic	HSATII|Satellite|Satellite	221476	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
321	chr1	149035814	149035824	+	0	NA	intron (NR_104217, intron 2 of 17).2	HSATII|Satellite|Satellite	73906	NR_104217	101929780	Hs.534675	NR_104217	ENSG00000272150	NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family member 25, pseudogene	pseudo
5700	chr8	91336508	91336732	+	0	NA	intron (NR_051989, intron 2 of 3)	intron (NR_051989, intron 2 of 3)	102904	NR_051989	100874052	Hs.571514	NR_051989	ENSG00000253394	LINC00534	-	long intergenic non-protein coding RNA 534	ncRNA
3209	chr2	109248866	109249422	+	0	NA	intron (NM_001193484, intron 1 of 9)	intron (NM_001193484, intron 1 of 9)	11442	NM_001193484	3987	Hs.597715	NM_004987	ENSG00000169756	LIMS1	PINCH|PINCH-1|PINCH1	LIM zinc finger domain containing 1	protein-coding
2896	chr2	4068061	4068308	+	0	NA	Intergenic	LTR18B|LTR|ERVL	46433	NR_136322	105373394	Hs.742693	NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
1079	chr11	134242667	134242886	+	0	NA	intron (NM_138342, intron 15 of 19)	intron (NM_138342, intron 15 of 19)	39036	NM_054025	27087	Hs.381050	NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
5183	chr7	30510209	30510355	+	0	NA	intron (NM_006092, intron 1 of 13)	intron (NM_006092, intron 1 of 13)	8111	NM_006092	10392	Hs.405153	NM_006092	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1	nucleotide binding oligomerization domain containing 1	protein-coding
2422	chr17	22247046	22252461	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	227316	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
5977	chr9	92301910	92302143	+	0	NA	intron (NR_024280, intron 3 of 5)	intron (NR_024280, intron 3 of 5)	47328	NR_024280	100129066	Hs.125947	NR_024280	ENSG00000237372	UNQ6494	-	uncharacterized LOC100129066	ncRNA
4884	chr6	80507372	80507576	+	0	NA	Intergenic	Intergenic	14489	NR_131786	89758	Hs.288213	NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
3407	chr2	227683789	227683921	+	0	NA	Intergenic	Intergenic	-16816	NM_032276	84236	Hs.471514	NM_032276	ENSG00000144468	RHBDD1	RRP4	rhomboid domain containing 1	protein-coding
1590	chr13	107881955	107882325	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	301456	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
5900	chr9	66833022	66833617	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-89648	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
1652	chr14	29685391	29685605	+	0	NA	Intergenic	Intergenic	-430505	NR_135255	105370424	Hs.375809	NR_135255	ENSG00000257056	LOC105370424	-	uncharacterized LOC105370424	ncRNA
4816	chr6	51262811	51262935	+	0	NA	Intergenic	Intergenic	-223795	NR_125840	101927082	Hs.730296	NR_125840		LOC101927082	-	uncharacterized LOC101927082	ncRNA
3980	chr3	155222508	155222604	+	0	NA	intron (NM_001130961, intron 11 of 23)	intron (NM_001130961, intron 11 of 23)	171549	NM_001130961	23007	Hs.567423	NM_014996	ENSG00000114805	PLCH1	PLCL3	phospholipase C eta 1	protein-coding
2933	chr2	8342373	8342599	+	0	NA	intron (NR_034135, intron 7 of 8)	intron (NR_034135, intron 7 of 8)	126063	NR_034135	339789	Hs.565619	NM_207358	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
760	chr11	12341291	12341350	+	0	NA	exon (NM_032867, exon 4 of 9)	exon (NM_032867, exon 4 of 9)	32873	NM_032867	84953	Hs.128196	NM_032867	ENSG00000133808	MICALCL	Ebitein1	MICAL C-terminal like	protein-coding
5459	chr7	130049299	130049690	+	0	NA	intron (NM_001257158, intron 5 of 9)	intron (NM_001257158, intron 5 of 9)	29282	NM_001868	1357	Hs.2879	NM_001868	ENSG00000091704	CPA1	CPA	carboxypeptidase A1	protein-coding
863	chr11	51569436	51569439	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	54155	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
4975	chr6	105768470	105768639	+	0	NA	intron (NM_002726, intron 10 of 14)	intron (NM_002726, intron 10 of 14)	82445	NM_002726	5550	Hs.436564	NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
531	chr10	24602305	24602511	+	0	NA	intron (NM_001098500, intron 3 of 18)	intron (NM_001098500, intron 3 of 18)	37794	NR_030334	693188		NR_030334	ENSG00000207930	MIR603	MIRN603|hsa-mir-603	microRNA 603	ncRNA
2469	chr17	36572144	36572342	+	0	NA	Intergenic	Intergenic	-12477	NM_001199417	57636	Hs.374446	NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
3317	chr2	175875652	175875869	+	0	NA	Intergenic	Intergenic	-5653	NR_038133	1123	Hs.380138	NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
1745	chr14	59273116	59273122	+	0	NA	Intergenic	Intergenic	-21887	NR_110547	102723742	Hs.232734	NR_110547	ENSG00000258583	LINC01500	-	long intergenic non-protein coding RNA 1500	ncRNA
2594	chr18	18747805	18747977	+	0	NA	Intergenic	Intergenic	-56079	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
3966	chr3	131776435	131776578	+	0	NA	Intergenic	L2b|LINE|L2	-18056	NM_153429	131034	Hs.199877	NM_130808	ENSG00000196353	CPNE4	COPN4|CPN4	copine 4	protein-coding
2111	chr15	76692257	76692593	+	0	NA	intron (NM_001145923, intron 27 of 31)	intron (NM_001145923, intron 27 of 31)	63360	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
3702	chr21	38436603	38436887	+	0	NA	promoter-TSS (NR_131189)	promoter-TSS (NR_131189)	-379	NR_131189	105372795	Hs.528019	NR_131189		LOC105372795	-	uncharacterized LOC105372795	ncRNA
2124	chr15	92115606	92115797	+	0	NA	Intergenic	LTR53|LTR|ERVL	109132	NR_110106	101926928	Hs.638788	NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
721	chr10	98869628	98869703	+	0	NA	intron (NM_003061, intron 4 of 36)	intron (NM_003061, intron 4 of 36)	7152	NR_038330	100505540	Hs.568878	NR_038330	ENSG00000234855	SLIT1-AS1	-	SLIT1 antisense RNA 1	ncRNA
1897	chr14	85435728	85435972	+	0	NA	Intergenic	LTR1B|LTR|ERV1	-417769	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
3482	chr20	13181356	13181453	+	0	NA	Intergenic	Intergenic	-21014	NM_080826	140862	Hs.559353	NM_080826	ENSG00000101230	ISM1	C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1	isthmin 1	protein-coding
6104	chr9_gl000199_random	132271	132927	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
669	chr10	70356779	70356963	+	0	NA	intron (NM_030625, intron 2 of 11)	AluSz|SINE|Alu	36754	NM_030625	80312	Hs.258855	NM_030625	ENSG00000138336	TET1	CXXC6|LCX|MLL-TET1|TET1-MLL|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
282	chr1	121462478	121462605	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	201631	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
420	chr1	206878091	206878445	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	19903	NM_004759	9261	Hs.643566	NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	mitogen-activated protein kinase-activated protein kinase 2	protein-coding
3622	chr21	10819120	10819192	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	171787	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
5682	chr8	82281728	82281851	+	0	NA	Intergenic	Intergenic	77930	NM_002677	5375	Hs.571512	NM_002677	ENSG00000147588	PMP2	FABP8|M-FABP|MP2|P2	peripheral myelin protein 2	protein-coding
5489	chr7	140007286	140007383	+	0	NA	Intergenic	MIRb|SINE|MIR	91016	NM_001287498	84255	Hs.446021	NM_032295	ENSG00000157800	SLC37A3	-	solute carrier family 37 member 3	protein-coding
989	chr11	111317324	111317385	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-28443	NR_046085	100132078	Hs.672662	NR_046085	ENSG00000255428	LOC100132078	-	uncharacterized LOC100132078	ncRNA
4630	chr6	1724394	1724563	+	0	NA	intron (NM_001500, intron 9 of 10)	intron (NM_001500, intron 9 of 10)	113797	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
2372	chr16	78585332	78585578	+	0	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	452145	NM_001291997	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
1348	chr12	116135582	116135826	+	0	NA	Intergenic	Intergenic	450755	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
5656	chr8	71944277	71944641	+	0	NA	Intergenic	AluSz|SINE|Alu	324287	NM_172059	2138	Hs.444971	NM_000503	ENSG00000104313	EYA1	BOP|BOR|BOS1|OFC1	EYA transcriptional coactivator and phosphatase 1	protein-coding
2945	chr2	10873735	10874035	+	0	NA	intron (NM_144583, intron 3 of 12)	intron (NM_144583, intron 3 of 12)	12110	NM_144583	245973	Hs.580464	NM_144583	ENSG00000143882	ATP6V1C2	ATP6C2|VMA5	ATPase H+ transporting V1 subunit C2	protein-coding
4673	chr6	19297894	19298113	+	0	NA	Intergenic	Intergenic	-117292	NR_110860	101928519	Hs.551771	NR_110860		LOC101928519	-	uncharacterized LOC101928519	ncRNA
577	chr10	38882359	38882360	+	0	NA	Intergenic	HSATII|Satellite|Satellite	-107368	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
1137	chr12	31902189	31902368	+	0	NA	Intergenic	LTR8|LTR|ERV1	-20170	NM_001278412	196394	Hs.585084	NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
3511	chr20	26305858	26305869	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-115994	NR_040095	284801	Hs.370699	NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
3504	chr20	20222560	20222927	+	0	NA	intron (NM_015585, intron 18 of 26)	intron (NM_015585, intron 18 of 26)	-126022	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
6356	chrY	13141250	13141272	+	0	NA	Intergenic	Intergenic	1392128	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4843	chr6	58780169	58780187	+	0	NA	Intergenic	Intergenic	-492454	NR_132996	106660612	Hs.561539	NR_125727	ENSG00000215190	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
3381	chr2	213019402	213019968	+	0	NA	intron (NM_005235, intron 1 of 27)	intron (NM_005235, intron 1 of 27)	271399	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
852	chr11	47485753	47485954	+	0	NA	Intergenic	Intergenic	-15123	NM_005055	5913	Hs.81218	NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
643	chr10	42794775	42794869	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	68671	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
4341	chr4	151287581	151287834	+	0	NA	intron (NM_006726, intron 48 of 57)	intron (NM_006726, intron 48 of 57)	-215370	NM_006439	10586	Hs.584852	NM_006439	ENSG00000181541	MAB21L2	MCOPS14	mab-21 like 2	protein-coding
5721	chr8	94530952	94531233	+	0	NA	intron (NR_033858, intron 7 of 10)	intron (NR_033858, intron 7 of 10)	181569	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	ncRNA
6193	chrUn_gl000216	80522	80615	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5732	chr8	99878702	99879157	+	0	NA	intron (NM_001256312, intron 3 of 12)	LTR16A|LTR|ERVL	-41020	NM_006281	6788	Hs.492333	NM_006281	ENSG00000104375	STK3	KRS1|MST2	serine/threonine kinase 3	protein-coding
1120	chr12	16265961	16266234	+	0	NA	Intergenic	Intergenic	164522	NM_001170798	729025	Hs.692712	NM_001170798	ENSG00000188991	SLC15A5	-	solute carrier family 15 member 5	protein-coding
6288	chrX	61682061	61682520	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	888928	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
1475	chr13	44792189	44792370	+	0	NA	Intergenic	AluSx|SINE|Alu	-21943	NR_107046	102465876		NR_107046	ENSG00000276319	MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
5402	chr7	114677980	114678293	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	-40876	NR_120521	102724386	Hs.352357	NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
1187	chr12	42377751	42378021	+	0	NA	Intergenic	Intergenic	160787	NM_001099650	283464	Hs.259347	NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
2968	chr2	33273009	33273328	+	0	NA	intron (NM_206943, intron 3 of 33)	intron (NM_206943, intron 3 of 33)	-86496	NM_001166264	4052	Hs.619315	NM_000627	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
2092	chr15	72491727	72491733	+	0	NA	3' UTR (NM_001206796, exon 12 of 12)	3' UTR (NM_001206796, exon 12 of 12)	-1594	NM_001012642	196996	Hs.596332	NM_001012642	ENSG00000175318	GRAMD2	-	GRAM domain containing 2	protein-coding
1251	chr12	96068799	96068848	+	0	NA	intron (NM_001329702, intron 7 of 9)	intron (NM_001329702, intron 7 of 9)	25792	NR_077225	100132594	Hs.676211	NR_077225	ENSG00000257150	PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
5448	chr7	129936981	129937311	+	0	NA	intron (NM_001163446, intron 1 of 9)	intron (NM_001163446, intron 1 of 9)	4172	NM_016352	51200	Hs.93764	NM_016352	ENSG00000128510	CPA4	CPA3	carboxypeptidase A4	protein-coding
3904	chr3	108476255	108476316	+	0	NA	promoter-TSS (NM_032579)	promoter-TSS (NM_032579)	-155	NM_032579	84666	Hs.307047	NM_032579	ENSG00000163515	RETNLB	FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2	resistin like beta	protein-coding
2456	chr17	30953947	30954128	+	0	NA	intron (NM_001303279, intron 20 of 21)	intron (NM_001303279, intron 20 of 21)	139932	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
1192	chr12	48415544	48415654	+	0	NA	Intergenic	Intergenic	-17314	NM_033150	1280	Hs.408182	NM_001844	ENSG00000139219	COL2A1	ANFH|AOM|COL11A3|SEDC|STL1	collagen type II alpha 1 chain	protein-coding
5452	chr7	129992133	129992394	+	0	NA	intron (NM_001127441, intron 6 of 13)	intron (NM_001127441, intron 6 of 13)	7633	NM_080385	93979	Hs.567642	NM_080385	ENSG00000158525	CPA5	-	carboxypeptidase A5	protein-coding
879	chr11	51579900	51579910	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	64623	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
3899	chr3	106961438	106961906	+	0	NA	intron (NR_028302, intron 1 of 3)	L1ME3|LINE|L1	2133	NR_028302	344595	Hs.543039	NR_028301	ENSG00000243701	DUBR	DUM|LINC00883|LINC0883	DPPA2 upstream binding RNA	ncRNA
3017	chr2	51048464	51048690	+	0	NA	intron (NM_001135659, intron 5 of 23)	MIR|SINE|MIR	-125177	NR_130470	103504737		NR_130470	ENSG00000216191	MIR8485	hsa-mir-8485	microRNA 8485	ncRNA
1095	chr12	5048648	5048767	+	0	NA	Intergenic	Intergenic	29634	NM_000217	3736	Hs.416139	NM_000217	ENSG00000111262	KCNA1	AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1	potassium voltage-gated channel subfamily A member 1	protein-coding
3961	chr3	130530558	130530614	+	0	NA	Intergenic	Intergenic	-38783	NM_001199182	27032	Hs.584884	NM_014382	ENSG00000017260	ATP2C1	ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1	ATPase secretory pathway Ca2+ transporting 1	protein-coding
3104	chr2	89853443	89853482	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	741578	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
2975	chr2	37048646	37048816	+	0	NA	Intergenic	Intergenic	124898	NM_001177969	5212	Hs.137415	NM_053276	ENSG00000205221	VIT	-	vitrin	protein-coding
1444	chr13	31621247	31621573	+	0	NA	Intergenic	Intergenic	114576	NM_152325	122046	Hs.124463	NM_152325	ENSG00000175664	TEX26	C13orf26	testis expressed 26	protein-coding
1883	chr14	82955656	82955768	+	0	NA	Intergenic	L2b|LINE|L2	-866307	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
4691	chr6	20717885	20718145	+	0	NA	intron (NM_017774, intron 5 of 15)	intron (NM_017774, intron 5 of 15)	183327	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
1846	chr14	76953034	76953373	+	0	NA	intron (NM_004452, intron 7 of 10)	intron (NM_004452, intron 7 of 10)	115513	NM_004452	2103	Hs.435845	NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen related receptor beta	protein-coding
4832	chr6	53791905	53792160	+	0	NA	Intergenic	Intergenic	-2748	NR_125842	101927189	Hs.453592	NR_125842	ENSG00000236740	LOC101927189	-	uncharacterized LOC101927189	ncRNA
133	chr1	51098968	51099053	+	0	NA	intron (NM_007051, intron 8 of 18)	intron (NM_007051, intron 8 of 18)	-209891	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
2600	chr18	20718414	20718742	+	0	NA	intron (NM_001100619, intron 1 of 9)	intron (NM_001100619, intron 1 of 9)	2851	NM_001100619	91768	Hs.11108	NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
2515	chr17	65524713	65525123	+	0	NA	intron (NM_181671, intron 1 of 9)	intron (NM_181671, intron 1 of 9)	-57217	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
5749	chr8	102962001	102962289	+	0	NA	intron (NM_001040624, intron 3 of 7)	intron (NM_001040624, intron 3 of 7)	-34515	NR_126152	104054148	Hs.683917	NR_126152		LOC104054148	-	uncharacterized LOC104054148	ncRNA
4616	chr5	171991762	171991819	+	0	NA	Intergenic	MIRb|SINE|MIR	-76479	NM_001308178	54492	Hs.91521	NM_001142651	ENSG00000214357	NEURL1B	NEURL3|hNeur2|neur2	neuralized E3 ubiquitin protein ligase 1B	protein-coding
5017	chr6	111873537	111873716	+	0	NA	intron (NR_034109, intron 1 of 1)	intron (NR_034109, intron 1 of 1)	14937	NM_001164283	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
1828	chr14	71177091	71177316	+	0	NA	intron (NR_125769, intron 3 of 3)	intron (NR_125769, intron 3 of 3)	11788	NR_125769	103695436	Hs.572296	NR_125769	ENSG00000258689	LINC01269	-	long intergenic non-protein coding RNA 1269	ncRNA
2605	chr18	21589490	21589613	+	0	NA	intron (NR_110796, intron 2 of 5)	intron (NR_110796, intron 2 of 5)	-4833	NM_001135993	125488	Hs.128576	NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
56	chr1	27998963	27999176	+	0	NA	promoter-TSS (NM_022873)	promoter-TSS (NM_022873)	-345	NM_002038	2537	Hs.523847	NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	interferon alpha inducible protein 6	protein-coding
3977	chr3	149137027	149137123	+	0	NA	Intergenic	Intergenic	-41507	NM_014220	4071	Hs.351316	NM_014220	ENSG00000169908	TM4SF1	H-L6|L6|M3S1|TAAL6	transmembrane 4 L six family member 1	protein-coding
3006	chr2	46484660	46485059	+	0	NA	Intergenic	Intergenic	-39682	NM_001430	2034	Hs.468410	NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
4282	chr4	98270791	98270972	+	0	NA	Intergenic	Intergenic	-17196	NR_102713	101410545	Hs.628520	NR_102713	ENSG00000251620	STPG2-AS1	-	STPG2 antisense RNA 1	ncRNA
306	chr1	145029105	145029165	+	0	NA	intron (NM_022359, intron 1 of 6)	intron (NM_022359, intron 1 of 6)	10828	NR_144517	100996724	Hs.682380	NR_144516		LOC100996724	-	phosphodiesterase 4D interacting protein-like	pseudo
70	chr1	32528578	32528627	+	0	NA	Intergenic	Intergenic	-9030	NM_001319677	55116	Hs.25544	NM_018056	ENSG00000121775	TMEM39B	-	transmembrane protein 39B	protein-coding
5966	chr9	84280438	84280792	+	0	NA	intron (NM_005077, intron 4 of 19)	intron (NM_005077, intron 4 of 19)	23835	NM_001303104	7088	Hs.197320	NM_005077	ENSG00000196781	TLE1	ESG|ESG1|GRG1	transducin like enhancer of split 1	protein-coding
5552	chr8	9638248	9638303	+	0	NA	3' UTR (NM_003747, exon 27 of 27)	3' UTR (NM_003747, exon 27 of 27)	39093	NR_030327	693182		NR_030327	ENSG00000207701	MIR597	MIRN597|hsa-mir-597|mir-597	microRNA 597	ncRNA
4038	chr3	177548301	177548621	+	0	NA	intron (NR_110826, intron 1 of 2)	intron (NR_110826, intron 1 of 2)	13808	NR_110826	102724550	Hs.570526	NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
166	chr1	65516475	65516790	+	0	NA	intron (NM_001321853, intron 2 of 26)	MIRb|SINE|MIR	6893	NR_037443	100500854		NR_037443	ENSG00000265996	MIR3671	-	microRNA 3671	ncRNA
2225	chr16	33874141	33874149	+	0	NA	Intergenic	(GAATG)n|Simple_repeat|Simple_repeat	88358	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
1578	chr13	107448751	107448790	+	0	NA	Intergenic	Intergenic	142542	NR_047026	100874173	Hs.569297	NR_047026	ENSG00000230156	LINC00443	-	long intergenic non-protein coding RNA 443	ncRNA
6087	chr9_gl000199_random	31647	31918	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
4352	chr4	154065362	154065540	+	0	NA	Intergenic	Intergenic	-8819	NM_001130067	23321	Hs.435711	NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
30	chr1	8767393	8767441	+	0	NA	intron (NM_001042681, intron 1 of 22)	intron (NM_001042681, intron 1 of 22)	110282	NM_012102	473	Hs.463041	NM_012102	ENSG00000142599	RERE	ARG|ARP|ATN1L|DNB1|NEDBEH	arginine-glutamic acid dipeptide repeats	protein-coding
466	chr1	221482930	221483009	+	0	NA	Intergenic	Intergenic	26669	NR_024236	400804	Hs.722626	NR_024236	ENSG00000234754	C1orf140	-	uncharacterized LOC400804	ncRNA
134	chr1	51099054	51099245	+	0	NA	intron (NM_007051, intron 8 of 18)	intron (NM_007051, intron 8 of 18)	-210030	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
3038	chr2	59610399	59610618	+	0	NA	Intergenic	Intergenic	165665	NR_110219	101927285	Hs.570209	NR_110219	ENSG00000222030	LINC01793	-	long intergenic non-protein coding RNA 1793	ncRNA
2151	chr16	1940488	1940615	+	0	NA	Intergenic	Intergenic	-6319	NR_033914	64735	Hs.662737	NR_033914	ENSG00000281219	LINC00254	C16orf32|NCRNA00254	long intergenic non-protein coding RNA 254	ncRNA
618	chr10	39138054	39138213	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	148406	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
4732	chr6	23177614	23177704	+	0	NA	Intergenic	Intergenic	-459506	NR_134613	105374972	Hs.484889	NR_134613		LOC105374972	-	uncharacterized LOC105374972	ncRNA
3290	chr2	161329476	161329692	+	0	NA	intron (NM_002897, intron 1 of 13)	intron (NM_002897, intron 1 of 13)	20734	NM_016836	5937	Hs.470412	NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
848	chr11	34653660	34654172	+	0	NA	promoter-TSS (NM_001206616)	promoter-TSS (NM_001206616)	-95	NM_001206616	26298	Hs.653859	NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
6472	chrY	13869294	13869315	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	664085	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3717	chr21	41048458	41048752	+	0	NA	Intergenic	Intergenic	19358	NM_033170	10317	Hs.733638	NM_006057	ENSG00000183778	B3GALT5	B3GalT-V|B3GalTx|B3T5|GLCT5|beta-1,3-GalTase 5|beta-3-Gx-T5|beta3Gal-T5	beta-1,3-galactosyltransferase 5	protein-coding
1904	chr14	88818967	88819019	+	0	NA	Intergenic	Intergenic	-25737	NM_021161	54207	Hs.560255	NM_021161	ENSG00000100433	KCNK10	K2p10.1|PPP1R97|TREK-2|TREK2	potassium two pore domain channel subfamily K member 10	protein-coding
5043	chr6	138805985	138806185	+	0	NA	intron (NM_001144060, intron 2 of 7)	intron (NM_001144060, intron 2 of 7)	14494	NM_001144060	57224	Hs.652741	NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
1761	chr14	61696456	61696716	+	0	NA	Intergenic	Intergenic	51944	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
2196	chr16	23218650	23218935	+	0	NA	intron (NM_001039, intron 6 of 12)	intron (NM_001039, intron 6 of 12)	24752	NM_001039	6340	Hs.371727	NM_001039	ENSG00000166828	SCNN1G	BESC3|ENaCg|ENaCgamma|PHA1|SCNEG	sodium channel epithelial 1 gamma subunit	protein-coding
1323	chr12	106255399	106255506	+	0	NA	Intergenic	Intergenic	154900	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
1455	chr13	36073200	36073782	+	0	NA	intron (NM_001204197, intron 1 of 17)	intron (NM_001204197, intron 1 of 17)	22605	NM_001204197	26960	Hs.491172	NM_015678	ENSG00000172915	NBEA	BCL8B|LYST2	neurobeachin	protein-coding
5758	chr8	105285408	105285698	+	0	NA	Intergenic	LOR1-int|LTR|ERV1	49990	NM_001282882	9699	Hs.655271	NM_014677	ENSG00000176406	RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
2662	chr18	35568450	35568498	+	0	NA	Intergenic	Intergenic	331376	NR_036202	100422857		NR_036202	ENSG00000266530	MIR4318	-	microRNA 4318	ncRNA
1492	chr13	59999851	59999931	+	0	NA	Intergenic	Intergenic	-586961	NR_046539	100874195	Hs.664101	NR_046539	ENSG00000227528	DIAPH3-AS1	-	DIAPH3 antisense RNA 1	ncRNA
4658	chr6	10583328	10583455	+	0	NA	intron (NM_001491, intron 1 of 2)	MIR3|SINE|MIR	-2602	NM_145655	2651	Hs.519884	NM_001491	ENSG00000111846	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)	protein-coding
5638	chr8	61705797	61705890	+	0	NA	intron (NM_017780, intron 3 of 37)	intron (NM_017780, intron 3 of 37)	52025	NM_001316690	55636	Hs.20395	NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
6438	chrY	13843673	13843680	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	689713	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3560	chr20	35271128	35271295	+	0	NA	intron (NM_175077, intron 1 of 7)	AluSp|SINE|Alu	3408	NM_175077	84174	Hs.713578	NM_032214	ENSG00000101082	SLA2	C20orf156|MARS|SLAP-2|SLAP2	Src like adaptor 2	protein-coding
1134	chr12	31032790	31033090	+	0	NA	Intergenic	Intergenic	-46898	NM_001080509	441631	Hs.505141	NM_001080509	ENSG00000110900	TSPAN11	VSSW1971	tetraspanin 11	protein-coding
3853	chr3	53991063	53991222	+	0	NA	Intergenic	Intergenic	-65100	NM_021237	58515	Hs.58471	NM_021237	ENSG00000113811	SELENOK	HSPC030|HSPC297|SELK	selenoprotein K	protein-coding
5595	chr8	41341999	41342637	+	0	NA	Intergenic	Intergenic	-5763	NM_016099	51125	Hs.654773	NM_016099	ENSG00000147533	GOLGA7	GCP16|GOLGA3AP1|GOLGA7A|HSPC041	golgin A7	protein-coding
5201	chr7	50619679	50619935	+	0	NA	intron (NM_001082971, intron 1 of 14)	intron (NM_001082971, intron 1 of 14)	8961	NM_001242887	1644	Hs.359698	NM_000790	ENSG00000132437	DDC	AADC	dopa decarboxylase	protein-coding
4455	chr5	49405969	49405970	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	331265	NM_198449	133418	Hs.561411	NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
4131	chr4	49100383	49100388	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	111726	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
1100	chr12	6480127	6480199	+	0	NA	intron (NM_001159576, intron 1 of 11)	intron (NM_001159576, intron 1 of 11)	4227	NM_001159576	6337	Hs.591047	NM_001038	ENSG00000111319	SCNN1A	BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1	sodium channel epithelial 1 alpha subunit	protein-coding
2861	chr19	49043195	49043482	+	0	NA	Intergenic	AluSx1|SINE|Alu	-12091	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	sulfotransferase family 2B member 1	protein-coding
1377	chr12	119696099	119696386	+	0	NA	Intergenic	Intergenic	44943	NR_024246	144742	Hs.524782	NR_024246	ENSG00000281196	LINC00934	-	long intergenic non-protein coding RNA 934	ncRNA
4663	chr6	15353369	15353482	+	0	NA	intron (NM_001267040, intron 1 of 17)	L1MB8|LINE|L1	104339	NM_001267040	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
185	chr1	75759502	75759626	+	0	NA	intron (NM_001320285, intron 7 of 25)	intron (NM_001320285, intron 7 of 25)	158997	NM_001256114	431707	Hs.403934	NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
5547	chr8	9013405	9013646	+	0	NA	Intergenic	Intergenic	-4373	NM_001201329	79660	Hs.458513	NM_024607	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1 regulatory subunit 3B	protein-coding
5122	chr7	7900701	7900731	+	0	NA	intron (NM_001302348, intron 3 of 3)	L1MB4|LINE|L1	-107658	NM_138426	113263	Hs.131673	NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
1719	chr14	51973932	51974202	+	0	NA	intron (NM_001042481, intron 1 of 14)	intron (NM_001042481, intron 1 of 14)	18228	NM_001042481	122786	Hs.434914	NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
2716	chr18	45860174	45860381	+	0	NA	intron (NM_001318841, intron 2 of 4)	intron (NM_001318841, intron 2 of 4)	75516	NM_001318841	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
4	chr1	724914	724921	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-10849	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
5755	chr8	103985544	103985751	+	0	NA	intron (NR_126338, intron 3 of 3)	intron (NR_126338, intron 3 of 3)	-47601	NM_001695	528	Hs.86905	NM_001695	ENSG00000155097	ATP6V1C1	ATP6C|ATP6D|VATC|Vma5	ATPase H+ transporting V1 subunit C1	protein-coding
5849	chr9	8086079	8086251	+	0	NA	Intergenic	Intergenic	-286359	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
127	chr1	50741336	50741389	+	0	NA	Intergenic	Intergenic	147757	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
71	chr1	33917823	33918231	+	0	NA	Intergenic	L1MA2|LINE|L1	-20205	NM_145238	7579	Hs.442705	NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
1648	chr14	28465300	28465575	+	0	NA	Intergenic	Intergenic	-362953	NR_130461	100422830		NR_130461	ENSG00000264657	MIR3171	-	microRNA 3171	ncRNA
1481	chr13	49403179	49403423	+	0	NA	Intergenic	Intergenic	-146747	NM_001079673	22862	Hs.508010	NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
3596	chr21	10087123	10087452	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-118693	NR_038328	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
2927	chr2	5265569	5265735	+	0	NA	Intergenic	Intergenic	-561840	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
2266	chr16	34022819	34022877	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-60345	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
6043	chr9	116105772	116106003	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	-3267	NM_001012361	114987	Hs.133331	NM_145241	ENSG00000148225	WDR31	-	WD repeat domain 31	protein-coding
2915	chr2	5197919	5198454	+	0	NA	Intergenic	Intergenic	-494374	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
6497	chrY	58979549	58979654	+	0	NA	Intergenic	(CATTC)n|Simple_repeat|Simple_repeat	-120802	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
5759	chr8	105285699	105285914	+	0	NA	Intergenic	LOR1-int|LTR|ERV1	50243	NM_001282882	9699	Hs.655271	NM_014677	ENSG00000176406	RIMS2	OBOE|RAB3IP3|RIM2	regulating synaptic membrane exocytosis 2	protein-coding
4564	chr5	136711907	136712311	+	0	NA	intron (NM_004598, intron 2 of 10)	intron (NM_004598, intron 2 of 10)	122909	NM_004598	6695	Hs.596136	NM_004598	ENSG00000152377	SPOCK1	SPOCK|TESTICAN|TIC1	SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1	protein-coding
512	chr1	245971001	245971104	+	0	NA	intron (NM_001167740, intron 10 of 11)	intron (NM_001167740, intron 10 of 11)	609662	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
5974	chr9	87793290	87793351	+	0	NA	Intergenic	Intergenic	508028	NM_001018064	4915	Hs.494312	NM_006180	ENSG00000148053	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic receptor tyrosine kinase 2	protein-coding
463	chr1	220395067	220395102	+	0	NA	intron (NM_012414, intron 2 of 34)	intron (NM_012414, intron 2 of 34)	-21066	NR_002994	677818	Hs.730572	NR_002994	ENSG00000222370	SNORA36B	ACA36b	small nucleolar RNA, H/ACA box 36B	snoRNA
5408	chr7	115371953	115372122	+	0	NA	Intergenic	Intergenic	236330	NM_001244583	22797	Hs.125962	NM_012252	ENSG00000105967	TFEC	TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L	transcription factor EC	protein-coding
517	chr1	246362776	246362792	+	0	NA	intron (NM_001167740, intron 5 of 11)	intron (NM_001167740, intron 5 of 11)	217930	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
5887	chr9	37324595	37324652	+	0	NA	intron (NM_001289121, intron 5 of 8)	intron (NM_001289121, intron 5 of 8)	-98084	NM_012203	9380	Hs.155742	NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
4963	chr6	102110915	102111120	+	0	NA	intron (NM_001166247, intron 3 of 16)	intron (NM_001166247, intron 3 of 16)	264156	NM_021956	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding
5345	chr7	91066080	91066191	+	0	NA	Intergenic	Intergenic	172352	NM_003505	8321	Hs.94234	NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
722	chr10	99608797	99608859	+	0	NA	intron (NR_108035, intron 1 of 2)	AluJo|SINE|Alu	727	NR_108035	100505561	Hs.351904	NR_108035	ENSG00000227356	LINC00866	-	long intergenic non-protein coding RNA 866	ncRNA
1363	chr12	117549255	117549741	+	0	NA	intron (NR_120464, intron 2 of 2)	intron (NR_120464, intron 2 of 2)	12226	NR_120464	101928244	Hs.742266	NR_120464		TESC-AS1	-	TESC antisense RNA 1 (head to head)	ncRNA
3588	chr21	10085391	10085560	+	0	NA	Intergenic	(GAGTG)n|Simple_repeat|Simple_repeat	-116881	NR_038328	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
1109	chr12	12009023	12009216	+	0	NA	intron (NM_001987, intron 4 of 7)	intron (NM_001987, intron 4 of 7)	206331	NM_001987	2120	Hs.504765	NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant 6	protein-coding
3051	chr2	64559205	64559368	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-8607	NR_039632	100616265		NR_039632	ENSG00000283222	MIR4433A	MIR4433|hsa-mir-4433a	microRNA 4433a	ncRNA
2067	chr15	66125084	66125224	+	0	NA	Intergenic	Intergenic	-36643	NM_001206836	8766	Hs.321541	NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
1597	chr13	108629290	108629506	+	0	NA	Intergenic	Intergenic	-109938	NM_001080396	728215	Hs.535394	NM_001080396	ENSG00000204442	FAM155A	-	family with sequence similarity 155 member A	protein-coding
4060	chr3	189022011	189022138	+	0	NA	intron (NM_198485, intron 4 of 5)	MIR3|SINE|MIR	-63691	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
2154	chr16	1940925	1941265	+	0	NA	Intergenic	AluSx|SINE|Alu	-6863	NR_033914	64735	Hs.662737	NR_033914	ENSG00000281219	LINC00254	C16orf32|NCRNA00254	long intergenic non-protein coding RNA 254	ncRNA
6023	chr9	107521425	107521425	+	0	NA	exon (NM_015469, exon 5 of 6)	exon (NM_015469, exon 5 of 6)	-4597	NM_018376	55335	Hs.429294	NM_018376	ENSG00000165028	NIPSNAP3B	FP944|NIPSNAP3|SNAP1	nipsnap homolog 3B	protein-coding
4171	chr4	49145917	49146890	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	157744	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
742	chr10	112897258	112897358	+	0	NA	Intergenic	Intergenic	60518	NM_000681	150	Hs.249159	NM_000681	ENSG00000150594	ADRA2A	ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32	adrenoceptor alpha 2A	protein-coding
58	chr1	30351364	30351845	+	0	NA	Intergenic	Intergenic	158855	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
153	chr1	59971638	59971678	+	0	NA	intron (NM_001244714, intron 4 of 13)	intron (NM_001244714, intron 4 of 13)	-9643	NM_001278224	55277	Hs.444301	NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
4980	chr6	105774531	105774578	+	0	NA	intron (NM_002726, intron 9 of 14)	intron (NM_002726, intron 9 of 14)	76445	NM_002726	5550	Hs.436564	NM_002726	ENSG00000085377	PREP	PE|PEP	prolyl endopeptidase	protein-coding
2932	chr2	8342006	8342372	+	0	NA	intron (NR_034135, intron 7 of 8)	intron (NR_034135, intron 7 of 8)	126360	NR_034135	339789	Hs.565619	NM_207358	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
2387	chr16	84172173	84172393	+	0	NA	intron (NM_031463, intron 1 of 5)	intron (NM_031463, intron 1 of 5)	6517	NM_031463	83693	Hs.555992	NM_031463	ENSG00000103160	HSDL1	SDR12C3	hydroxysteroid dehydrogenase like 1	protein-coding
4086	chr4	8012654	8013035	+	0	NA	intron (NM_001130086, intron 11 of 17)	intron (NM_001130086, intron 11 of 17)	-5736	NR_029511	407052		NR_029511	ENSG00000207807	MIR95	MIRN95|hsa-mir-95|miR-95	microRNA 95	ncRNA
101	chr1	42401864	42401998	+	0	NA	intron (NR_038261, intron 1 of 3)	Charlie17a|DNA|hAT-Charlie	-17435	NR_038260	59269	Hs.403972	NM_024503	ENSG00000127124	HIVEP3	KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C	human immunodeficiency virus type I enhancer binding protein 3	protein-coding
4362	chr4	166319913	166320109	+	0	NA	intron (NM_001873, intron 1 of 8)	intron (NM_001873, intron 1 of 8)	12617	NR_030304	693163		NR_030304	ENSG00000207559	MIR578	MIRN578|hsa-mir-578	microRNA 578	ncRNA
340	chr1	168019812	168020136	+	0	NA	intron (NM_018442, intron 15 of 19)	intron (NM_018442, intron 15 of 19)	52076	NR_031702	100313835		NR_031702	ENSG00000221545	MIR1255B2	MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2	microRNA 1255b-2	ncRNA
6028	chr9	110582024	110582093	+	0	NA	Intergenic	Intergenic	-330057	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel like factor 4	protein-coding
3906	chr3	108476633	108476764	+	0	NA	promoter-TSS (NM_032579)	promoter-TSS (NM_032579)	-568	NM_032579	84666	Hs.307047	NM_032579	ENSG00000163515	RETNLB	FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2	resistin like beta	protein-coding
6403	chrY	13808889	13808907	+	0	NA	Intergenic	Intergenic	724491	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3655	chr21	10856528	10856784	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	134287	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
5752	chr8	103137114	103137509	+	0	NA	promoter-TSS (NR_049859)	promoter-TSS (NR_049859)	-176	NM_001040630	83988	Hs.492427	NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
4012	chr3	174987603	174987935	+	0	NA	intron (NM_207015, intron 4 of 13)	L1MC4|LINE|L1	1116	NR_046713	100874244	Hs.581176	NR_046713		NAALADL2-AS2	-	NAALADL2 antisense RNA 2	ncRNA
2425	chr17	22262992	22263010	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	240564	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
3536	chr20	29817900	29818142	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-27446	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
1703	chr14	42368928	42369187	+	0	NA	intron (NR_144389, intron 6 of 6)	intron (NR_144389, intron 6 of 6)	292998	NM_152447	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
4671	chr6	18861442	18861728	+	0	NA	Intergenic	Intergenic	289570	NR_030312	693125		NR_030312	ENSG00000207775	MIR548A1	MIRN548A1	microRNA 548a-1	ncRNA
5084	chr6	160476332	160476484	+	0	NA	intron (NM_000876, intron 19 of 47)	intron (NM_000876, intron 19 of 47)	-37706	NR_003288	729603	Hs.674810	NR_003288	ENSG00000213073	LOC729603	-	calcineurin like EF-hand protein 1 pseudogene	pseudo
5073	chr6	156939965	156940282	+	0	NA	Intergenic	Intergenic	-158866	NM_001346813	57492	Hs.291587	NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT-rich interaction domain 1B	protein-coding
5880	chr9	14326688	14326981	+	0	NA	intron (NM_001190738, intron 1 of 8)	intron (NM_001190738, intron 1 of 8)	-12789	NM_001190737	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
4519	chr5	121652764	121653003	+	0	NA	intron (NM_001308107, intron 1 of 8)	intron (NM_001308107, intron 1 of 8)	5119	NM_001308100	9627	Hs.426463	NM_005460	ENSG00000064692	SNCAIP	SYPH1|Sph1	synuclein alpha interacting protein	protein-coding
4018	chr3	176448542	176448662	+	0	NA	Intergenic	Intergenic	86187	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
3571	chr20	46771822	46772143	+	0	NA	Intergenic	MER20|DNA|hAT-Charlie	-153121	NR_110027	101927457	Hs.445823	NR_110027		LINC01522	-	long intergenic non-protein coding RNA 1522	ncRNA
1172	chr12	34853834	34853866	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	678634	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
2510	chr17	64173015	64173605	+	0	NA	intron (NM_001199165, intron 2 of 26)	MER58A|DNA|hAT-Charlie	14677	NM_001302891	201134	Hs.408676	NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO	centrosomal protein 112	protein-coding
2458	chr17	30954313	30954521	+	0	NA	intron (NM_001303279, intron 20 of 21)	intron (NM_001303279, intron 20 of 21)	140312	NM_003885	8851	Hs.500015	NM_003885	ENSG00000176749	CDK5R1	CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a	cyclin dependent kinase 5 regulatory subunit 1	protein-coding
5598	chr8	43092608	43092748	+	0	NA	Intergenic	L1MB4|LINE|L1	-54907	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
834	chr11	27195074	27195423	+	0	NA	intron (NR_125766, intron 2 of 4)	MIR3|SINE|MIR	45067	NR_125768	103695435	Hs.196133	NR_125766	ENSG00000254560	BBOX1-AS1	-	BBOX1 antisense RNA 1	ncRNA
4912	chr6	90082189	90082431	+	0	NA	intron (NM_021244, intron 5 of 6)	intron (NM_021244, intron 5 of 6)	-19691	NM_016021	51465	Hs.163776	NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
285	chr1	121478405	121479078	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	217831	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
4397	chr5	2797413	2797682	+	0	NA	Intergenic	Intergenic	45302	NR_122125	153571	Hs.148486	NM_178569	ENSG00000186493	C5orf38	CEI|IRX2NB	chromosome 5 open reading frame 38	protein-coding
2441	chr17	25267213	25267316	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	149003	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
5171	chr7	28880671	28880699	+	0	NA	Intergenic	Intergenic	117344	NM_014817	9865	Hs.744120	NM_014817	ENSG00000255690	TRIL	-	TLR4 interactor with leucine rich repeats	protein-coding
2414	chr17	9274674	9274789	+	0	NA	intron (NM_004853, intron 7 of 7)	intron (NM_004853, intron 7 of 7)	-192296	NR_110828	101928266	Hs.639880	NR_110828	ENSG00000262966	LOC101928266	-	uncharacterized LOC101928266	ncRNA
1216	chr12	68744045	68744102	+	0	NA	Intergenic	Intergenic	-17912	NM_020128	56890	Hs.655702	NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
4657	chr6	10583029	10583327	+	0	NA	intron (NM_001491, intron 1 of 2)	MIR|SINE|MIR	-2815	NM_145655	2651	Hs.519884	NM_001491	ENSG00000111846	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)	protein-coding
3879	chr3	99585586	99585822	+	0	NA	intron (NR_031662, intron 2 of 4)	intron (NR_031662, intron 2 of 4)	9343	NM_014890	11259	Hs.104672	NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
4423	chr5	8383780	8384001	+	0	NA	intron (NR_039984, intron 3 of 5)	intron (NR_039984, intron 3 of 5)	73787	NR_039984	729506	Hs.566412	NR_039984	ENSG00000245729	LOC729506	-	uncharacterized LOC729506	ncRNA
2194	chr16	23218141	23218302	+	0	NA	intron (NM_001039, intron 6 of 12)	intron (NM_001039, intron 6 of 12)	24181	NM_001039	6340	Hs.371727	NM_001039	ENSG00000166828	SCNN1G	BESC3|ENaCg|ENaCgamma|PHA1|SCNEG	sodium channel epithelial 1 gamma subunit	protein-coding
2285	chr16	48160694	48160719	+	0	NA	intron (NM_033226, intron 9 of 28)	intron (NM_033226, intron 9 of 28)	19975	NM_033226	94160	Hs.410111	NM_033226	ENSG00000140798	ABCC12	MRP9	ATP binding cassette subfamily C member 12	protein-coding
3092	chr2	89830570	89830647	+	0	NA	Intergenic	HSATII|Satellite|Satellite	718724	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
6425	chrY	13838133	13838390	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	695128	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1135	chr12	31033091	31033368	+	0	NA	Intergenic	Intergenic	-46609	NM_001080509	441631	Hs.505141	NM_001080509	ENSG00000110900	TSPAN11	VSSW1971	tetraspanin 11	protein-coding
4198	chr4	49638830	49638835	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	650173	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
2864	chr19	49419404	49419693	+	0	NA	intron (NM_006184, intron 7 of 12)	MER3|DNA|hAT-Charlie	2600	NR_046633	100874085	Hs.569933	NR_046633	ENSG00000235191	NUCB1-AS1	-	NUCB1 antisense RNA 1	ncRNA
96	chr1	40310966	40311056	+	0	NA	intron (NR_132413, intron 1 of 3)	intron (NR_132413, intron 1 of 3)	38172	NM_001312691	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
1667	chr14	36785016	36785350	+	0	NA	intron (NM_016586, intron 2 of 8)	intron (NM_016586, intron 2 of 8)	4699	NM_016586	51562	Hs.368647	NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
3836	chr3	24128430	24128964	+	0	NA	Intergenic	Intergenic	16041	NR_026834	152024	Hs.385606	NR_026834	ENSG00000224074	LINC00691	-	long intergenic non-protein coding RNA 691	ncRNA
2114	chr15	77767428	77767603	+	0	NA	intron (NM_018200, intron 7 of 10)	intron (NM_018200, intron 7 of 10)	-50422	NR_135692	101929457	Hs.637111	NR_135692	ENSG00000259362	LOC101929457	-	uncharacterized LOC101929457	ncRNA
5085	chr6	160476485	160476722	+	0	NA	intron (NM_000876, intron 19 of 47)	intron (NM_000876, intron 19 of 47)	-37511	NR_003288	729603	Hs.674810	NR_003288	ENSG00000213073	LOC729603	-	calcineurin like EF-hand protein 1 pseudogene	pseudo
569	chr10	38872014	38872024	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-117708	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
4269	chr4	89870601	89870936	+	0	NA	intron (NM_014883, intron 4 of 23)	intron (NM_014883, intron 4 of 23)	107578	NM_014883	10144	Hs.97270	NM_014883	ENSG00000138640	FAM13A	ARHGAP48|FAM13A1	family with sequence similarity 13 member A	protein-coding
3111	chr2	89865940	89865940	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	754056	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
5930	chr9	70009751	70009786	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	169047	NM_001126334	653427	Hs.714683	NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4-like 5	protein-coding
1396	chr12	125424050	125424305	+	0	NA	Intergenic	Intergenic	24084	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
1760	chr14	61696247	61696455	+	0	NA	Intergenic	Intergenic	52179	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
391	chr1	202026131	202026408	+	0	NA	Intergenic	Intergenic	46579	NM_001114309	1999	Hs.603657	NM_004433	ENSG00000163435	ELF3	EPR-1|ERT|ESE-1|ESX	E74 like ETS transcription factor 3	protein-coding
2033	chr15	57679865	57680034	+	0	NA	intron (NM_032866, intron 1 of 18)	intron (NM_032866, intron 1 of 18)	11246	NM_001252335	84952	Hs.148989	NM_032866	ENSG00000128849	CGNL1	JACOP|PCING	cingulin like 1	protein-coding
5188	chr7	34767371	34767736	+	0	NA	intron (NR_015356, intron 3 of 4)	intron (NR_015356, intron 3 of 4)	30331	NR_033665	404744	Hs.487951	NM_207283	ENSG00000197085	NPSR1-AS1	AAA1	NPSR1 antisense RNA 1	ncRNA
5251	chr7	61791720	61791854	+	0	NA	Intergenic	HSATII|Satellite|Satellite	972647	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
4335	chr4	141284741	141285089	+	0	NA	intron (NM_001153585, intron 1 of 3)	Tigger2|DNA|TcMar-Tigger	9631	NR_033939	100129858	Hs.660477	NR_033939	ENSG00000196951	SCOC-AS1	-	SCOC antisense RNA 1	ncRNA
5048	chr6	138898827	138899220	+	0	NA	Intergenic	Intergenic	-5355	NM_020464	57224	Hs.652741	NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
6444	chrY	13844091	13844118	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	689285	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
2676	chr18	38730392	38730727	+	0	NA	Intergenic	Intergenic	370002	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA
5821	chr8	143143942	143144119	+	0	NA	Intergenic	Intergenic	-64373	NR_130468	100616374		NR_130468	ENSG00000265612	MIR4539	-	microRNA 4539	ncRNA
5596	chr8	41342638	41342882	+	0	NA	Intergenic	Intergenic	-5321	NM_016099	51125	Hs.654773	NM_016099	ENSG00000147533	GOLGA7	GCP16|GOLGA3AP1|GOLGA7A|HSPC041	golgin A7	protein-coding
180	chr1	75430403	75430488	+	0	NA	Intergenic	Intergenic	-163674	NM_001001933	431707	Hs.403934	NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
1375	chr12	118975436	118975664	+	0	NA	Intergenic	Intergenic	161192	NM_022491	64426	Hs.416630	NM_022491	ENSG00000111707	SUDS3	SAP45|SDS3	SDS3 homolog, SIN3A corepressor complex component	protein-coding
2907	chr2	4406875	4406929	+	0	NA	Intergenic	Intergenic	296910	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
4353	chr4	154388436	154388765	+	0	NA	intron (NM_015196, intron 2 of 34)	CpG-20197	1102	NM_001131007	23240	Hs.732450	NM_015196	ENSG00000121210	KIAA0922	TMEM131L	KIAA0922	protein-coding
4097	chr4	10356796	10356873	+	0	NA	Intergenic	Intergenic	102198	NM_053042	85460	Hs.455089	NM_053042	ENSG00000178163	ZNF518B	-	zinc finger protein 518B	protein-coding
1877	chr14	82533782	82533799	+	0	NA	Intergenic	Intergenic	-444385	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
2939	chr2	9319664	9319688	+	0	NA	Intergenic	Intergenic	-27218	NM_001135191	8853	Hs.555902	NM_003887	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
246	chr1	112434933	112435222	+	0	NA	intron (NM_004980, intron 2 of 7)	intron (NM_004980, intron 2 of 7)	-17202	NR_046619	100873995	Hs.535274	NR_046619	ENSG00000237556	KCND3-AS1	-	KCND3 antisense RNA 1	ncRNA
5610	chr8	43095804	43096283	+	0	NA	Intergenic	SAR|Satellite|Satellite	-51542	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
2227	chr16	33887564	33887611	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	74916	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
4001	chr3	170910440	170910457	+	0	NA	intron (NM_001161560, intron 5 of 31)	intron (NM_001161560, intron 5 of 31)	-85900	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
1168	chr12	34846891	34847036	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	671747	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
3241	chr2	133340161	133340267	+	0	NA	intron (NM_001508, intron 1 of 1)	intron (NM_001508, intron 1 of 1)	87729	NM_144586	116372	Hs.432395	NM_144586	ENSG00000150551	LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding
4102	chr4	20355805	20356200	+	0	NA	intron (NM_001289136, intron 4 of 35)	intron (NM_001289136, intron 4 of 35)	-37810	NR_037876	100505893	Hs.665305	NR_037876	ENSG00000248228	SLIT2-IT1	-	SLIT2 intronic transcript 1	ncRNA
4323	chr4	140796378	140796467	+	0	NA	intron (NM_018717, intron 3 of 5)	intron (NM_018717, intron 3 of 5)	209500	NM_002413	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
536	chr10	29265250	29265318	+	0	NA	Intergenic	Intergenic	129947	NM_001278522	283080		NM_001278522		C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
4661	chr6	15061727	15061995	+	0	NA	Intergenic	AluSz6|SINE|Alu	-184345	NM_004973	3720	Hs.269059	NM_004973	ENSG00000008083	JARID2	JMJ	jumonji and AT-rich interaction domain containing 2	protein-coding
1767	chr14	61855501	61855857	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	67518	NM_006255	5583	Hs.333907	NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta	protein kinase C eta	protein-coding
1653	chr14	29685606	29685941	+	0	NA	Intergenic	Intergenic	-430780	NR_135255	105370424	Hs.375809	NR_135255	ENSG00000257056	LOC105370424	-	uncharacterized LOC105370424	ncRNA
2237	chr16	33896321	33896356	+	0	NA	Intergenic	HSATII|Satellite|Satellite	66165	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
5186	chr7	34767085	34767189	+	0	NA	intron (NR_015356, intron 3 of 4)	intron (NR_015356, intron 3 of 4)	30747	NR_033665	404744	Hs.487951	NM_207283	ENSG00000197085	NPSR1-AS1	AAA1	NPSR1 antisense RNA 1	ncRNA
1688	chr14	37240522	37240714	+	0	NA	intron (NM_030631, intron 3 of 9)	intron (NM_030631, intron 3 of 9)	113845	NM_006194	5083	Hs.132576	NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding
5378	chr7	107818766	107818847	+	0	NA	intron (NM_001037132, intron 22 of 29)	intron (NM_001037132, intron 22 of 29)	-48005	NM_001318048	22798	Hs.62022	NM_007356	ENSG00000091128	LAMB4	-	laminin subunit beta 4	protein-coding
3311	chr2	173754052	173754122	+	0	NA	intron (NM_001282899, intron 1 of 27)	intron (NM_001282899, intron 1 of 27)	29321	NM_001282899	11069	Hs.470646	NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
1458	chr13	37121482	37121816	+	0	NA	Intergenic	Intergenic	115240	NM_003914	8900	Hs.417050	NM_003914	ENSG00000133101	CCNA1	CT146	cyclin A1	protein-coding
2958	chr2	24882665	24882847	+	0	NA	intron (NM_147223, intron 3 of 21)	MER20|DNA|hAT-Charlie	75410	NM_147223	8648	Hs.596314	NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
444	chr1	209630219	209630336	+	0	NA	Intergenic	Intergenic	24799	NR_029622	406988		NR_029622	ENSG00000230937	MIR205	MIRN205|mir-205	microRNA 205	ncRNA
508	chr1	245179964	245180521	+	0	NA	intron (NM_001290327, intron 2 of 7)	L1ME3|LINE|L1	-46071	NR_111907	101928068	Hs.134857	NR_111907		LOC101928068	-	uncharacterized LOC101928068	ncRNA
1336	chr12	112547481	112547676	+	0	NA	promoter-TSS (NM_024953)	promoter-TSS (NM_024953)	-943	NM_024953	80018	Hs.530941	NM_024953	ENSG00000111300	NAA25	C12orf30|MDM20|NAP1	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding
4025	chr3	177000088	177000207	+	0	NA	Intergenic	Intergenic	-12083	NR_047465	100820709	Hs.518409	NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
3260	chr2	147955499	147955628	+	0	NA	Intergenic	Intergenic	610938	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein cytoplasmic 1 pseudogene 2	pseudo
1089	chr12	3807873	3808186	+	0	NA	intron (NM_032680, intron 3 of 10)	intron (NM_032680, intron 3 of 10)	54337	NM_001144958	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
12	chr1	725489	725499	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-11426	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
6221	chrUn_gl000225	21504	21559	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
3036	chr2	58105028	58105479	+	0	NA	Intergenic	Intergenic	-29533	NM_001288837	7444	Hs.715298	NM_006296	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
1554	chr13	101135946	101136042	+	0	NA	intron (NM_001178004, intron 21 of 22)	intron (NM_001178004, intron 21 of 22)	-2725	NR_047686	100885777	Hs.662554	NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
2168	chr16	9241384	9241627	+	0	NA	Intergenic	MER34A1|LTR|ERV1	55968	NM_014117	29035	Hs.221497	NM_014117	ENSG00000182831	C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
4137	chr4	49113280	49113289	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	124625	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
6140	chrUn_gl000216	9863	9869	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
3518	chr20	26318390	26318659	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-128655	NR_040095	284801	Hs.370699	NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
3707	chr21	40328668	40329140	+	0	NA	Intergenic	Intergenic	-18551	NR_120405	400867	Hs.689509	NR_120405		LOC400867	-	uncharacterized LOC400867	ncRNA
6457	chrY	13862055	13862155	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	671284	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4806	chr6	46850676	46850757	+	0	NA	intron (NM_001098518, intron 6 of 20)	Charlie17a|DNA|hAT-Charlie	-20492	NR_110658	101926962	Hs.680113	NR_110658		LOC101926962	-	uncharacterized LOC101926962	ncRNA
6431	chrY	13839836	13839886	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	693528	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3343	chr2	200175496	200175538	+	0	NA	intron (NM_001172509, intron 9 of 10)	intron (NM_001172509, intron 9 of 10)	147302	NR_134967	23314	Hs.516617	NM_015265	ENSG00000119042	SATB2	GLSS	SATB homeobox 2	protein-coding
3413	chr2	229478332	229478651	+	0	NA	Intergenic	Intergenic	-432130	NM_030623	80309	Hs.436306	NM_030623	ENSG00000153820	SPHKAP	SKIP	SPHK1 interactor, AKAP domain containing	protein-coding
6385	chrY	13684785	13684893	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	848550	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
6315	chrX	61839434	61839678	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	731662	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
4036	chr3	177547977	177548175	+	0	NA	intron (NR_110826, intron 1 of 2)	L2c|LINE|L2	13423	NR_110826	102724550	Hs.570526	NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
875	chr11	51579194	51579205	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	63917	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
1522	chr13	95293390	95293941	+	0	NA	Intergenic	Intergenic	39561	NM_180989	160897	Hs.439363	NM_180989	ENSG00000152749	GPR180	ITR	G protein-coupled receptor 180	protein-coding
3467	chr20	9118051	9118797	+	0	NA	intron (NM_001172646, intron 1 of 37)	intron (NM_001172646, intron 1 of 37)	68723	NM_001172646	5332	Hs.472101	NM_000933	ENSG00000101333	PLCB4	ARCND2|PI-PLC	phospholipase C beta 4	protein-coding
116	chr1	48919432	48919578	+	0	NA	intron (NM_019073, intron 1 of 12)	A-rich|Low_complexity|Low_complexity	18375	NM_001286238	54558	Hs.538103	NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
136	chr1	51099260	51099535	+	0	NA	intron (NM_007051, intron 8 of 18)	intron (NM_007051, intron 8 of 18)	-210278	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
1197	chr12	49609171	49609529	+	0	NA	Intergenic	Intergenic	-12359	NM_001303117	84790	Hs.652390	NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
4390	chr5	2154727	2154993	+	0	NA	Intergenic	Intergenic	157455	NR_104616	100506858	Hs.445071	NR_104616		LOC100506858	-	uncharacterized LOC100506858	ncRNA
1580	chr13	107449006	107449104	+	0	NA	Intergenic	Intergenic	142827	NR_047026	100874173	Hs.569297	NR_047026	ENSG00000230156	LINC00443	-	long intergenic non-protein coding RNA 443	ncRNA
3274	chr2	157418764	157418943	+	0	NA	intron (NM_000408, intron 9 of 16)	intron (NM_000408, intron 9 of 16)	125953	NM_000408	2820	Hs.512382	NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
2146	chr15	101667936	101667997	+	0	NA	Intergenic	Intergenic	124171	NM_014918	22856	Hs.110488	NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
2419	chr17	22244503	22244561	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	222095	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
5541	chr8	6649869	6650256	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-43014	NR_045217	100652791	Hs.369771	NR_045217	ENSG00000245857	GS1-24F4.2	-	uncharacterized LOC100652791	ncRNA
5544	chr8	8953933	8954032	+	0	NA	Intergenic	Intergenic	48027	NR_039804	100616350		NR_039804	ENSG00000263407	MIR4660	-	microRNA 4660	ncRNA
4604	chr5	154774055	154774177	+	0	NA	Intergenic	Intergenic	380801	NM_001099293	285643	Hs.567824	NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding
308	chr1	149034134	149034596	+	0	NA	intron (NR_104217, intron 2 of 17).2	HSATII|Satellite|Satellite	75360	NR_104217	101929780	Hs.534675	NR_104217	ENSG00000272150	NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family member 25, pseudogene	pseudo
5742	chr8	101891134	101891422	+	0	NA	Intergenic	Intergenic	71521	NM_001135702	7534	Hs.492407	NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
3485	chr20	14074190	14074249	+	0	NA	intron (NM_080676, intron 3 of 16)	intron (NM_080676, intron 3 of 16)	98073	NM_080676	140733	Hs.661576	NM_080676	ENSG00000172264	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
5968	chr9	85538160	85538407	+	0	NA	Intergenic	Intergenic	139760	NM_152573	158158	Hs.129136	NM_152573	ENSG00000165105	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
5113	chr7	3307920	3308172	+	0	NA	Intergenic	Intergenic	-33034	NM_152744	221935	Hs.653013	NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
3802	chr22	40197193	40197534	+	0	NA	intron (NM_152512, intron 5 of 6)	intron (NM_152512, intron 5 of 6)	92431	NM_152512	150350	Hs.474869	NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
5843	chr9	7777141	7777559	+	0	NA	Intergenic	Intergenic	22456	NM_001318058	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
4811	chr6	49707254	49707592	+	0	NA	intron (NM_001190986, intron 1 of 7)	intron (NM_001190986, intron 1 of 7)	4745	NM_001190986	10321	Hs.404466	NM_006061	ENSG00000096006	CRISP3	Aeg2|CRISP-3|CRS3|SGP28|dJ442L6.3	cysteine rich secretory protein 3	protein-coding
3004	chr2	46119683	46120437	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	241017	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
3676	chr21	36600286	36600634	+	0	NA	Intergenic	Intergenic	-178865	NM_001754	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
5992	chr9	92931837	92932020	+	0	NA	Intergenic	Intergenic	-128147	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
5295	chr7	69118319	69118602	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	54555	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
3939	chr3	124211787	124211937	+	0	NA	intron (NM_001024660, intron 32 of 59)	intron (NM_001024660, intron 32 of 59)	-91644	NM_001322993	8997	Hs.8004	NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
3027	chr2	56066162	56066751	+	0	NA	Intergenic	Intergenic	84842	NM_001039349	2202	Hs.76224	NM_004105	ENSG00000115380	EFEMP1	DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5	EGF containing fibulin like extracellular matrix protein 1	protein-coding
301	chr1	144986822	144987158	+	0	NA	intron (NM_001002810, intron 1 of 3)	AluJr|SINE|Alu	8043	NM_001002810	9659	Hs.584841	NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
4686	chr6	19892545	19893075	+	0	NA	Intergenic	Intergenic	55209	NM_001546	3400	Hs.519601	NM_001546	ENSG00000172201	ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, HLH protein	protein-coding
4272	chr4	94068383	94068604	+	0	NA	intron (NM_001286838, intron 3 of 14)	intron (NM_001286838, intron 3 of 14)	-681585	NM_005172	474	Hs.532680	NM_005172	ENSG00000172238	ATOH1	ATH1|HATH1|MATH-1|bHLHa14	atonal bHLH transcription factor 1	protein-coding
51	chr1	16886270	16886429	+	0	NA	Intergenic	AluSq2|SINE|Alu	10940	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
1758	chr14	61669956	61670557	+	0	NA	Intergenic	Intergenic	78274	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
456	chr1	214408168	214408324	+	0	NA	Intergenic	Intergenic	-46319	NM_020197	56950	Hs.66170	NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
1822	chr14	70564672	70565014	+	0	NA	intron (NM_033262, intron 2 of 7)	intron (NM_033262, intron 2 of 7)	-17909	NM_001130417	6547	Hs.337696	NM_033262	ENSG00000100678	SLC8A3	NCX3	solute carrier family 8 member A3	protein-coding
3063	chr2	68073518	68073630	+	0	NA	Intergenic	Intergenic	-20880	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
1033	chr11	118494140	118494334	+	0	NA	intron (NM_001144758, intron 4 of 22)	intron (NM_001144758, intron 4 of 22)	15931	NM_001144758	23187	Hs.504062	NM_015157	ENSG00000019144	PHLDB1	LL5A	pleckstrin homology like domain family B member 1	protein-coding
4059	chr3	188691504	188691688	+	0	NA	Intergenic	Intergenic	-26168	NR_046873	100874043	Hs.616287	NR_046873	ENSG00000234076	TPRG1-AS1	-	TPRG1 antisense RNA 1	ncRNA
2736	chr18	53073018	53073043	+	0	NA	intron (NM_001330604, intron 5 of 19)	intron (NM_001330604, intron 5 of 19)	-1804	NM_001306208	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
2258	chr16	34021798	34021831	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-59311	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
1539	chr13	98281727	98282063	+	0	NA	Intergenic	Intergenic	195420	NM_021033	5911	Hs.508480	NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
796	chr11	16918642	16919191	+	0	NA	intron (NM_001329631, intron 3 of 22)	intron (NM_001329631, intron 3 of 22)	117047	NM_001329630	144100	Hs.12332	NM_175058	ENSG00000166689	PLEKHA7	-	pleckstrin homology domain containing A7	protein-coding
6081	chr9_gl000199_random	30714	30718	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
5512	chr7	147755482	147755722	+	0	NA	intron (NM_014141, intron 15 of 23)	intron (NM_014141, intron 15 of 23)	128917	NR_036093	100422849		NR_036093	ENSG00000221296	MIR548T	-	microRNA 548t	ncRNA
2349	chr16	68790154	68790464	+	0	NA	intron (NM_004360, intron 2 of 15)	intron (NM_004360, intron 2 of 15)	13890	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
6054	chr9	124107171	124107186	+	0	NA	intron (NM_198194, intron 2 of 2)	Tigger11a|DNA|TcMar-Tigger	25404	NR_073037	2040	Hs.253903	NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
366	chr1	182205082	182205407	+	0	NA	intron (NR_104175, intron 2 of 2)	intron (NR_104175, intron 2 of 2)	77952	NR_104175	400799	Hs.634884	NR_104175	ENSG00000228918	LINC01344	GS1-122H1.2	long intergenic non-protein coding RNA 1344	ncRNA
4506	chr5	99853259	99853589	+	0	NA	Intergenic	L1PBa|LINE|L1	-17585	NM_198507	345757	Hs.356108	NM_198507	ENSG00000174132	FAM174A	HGS_RE408|NS5ATP6|TMEM157|UNQ1912	family with sequence similarity 174 member A	protein-coding
1541	chr13	98282225	98282341	+	0	NA	Intergenic	Intergenic	195808	NM_021033	5911	Hs.508480	NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
5621	chr8	43793142	43795050	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	646511	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
5358	chr7	95423852	95424001	+	0	NA	intron (NM_001278422, intron 1 of 15)	intron (NM_001278422, intron 1 of 15)	22108	NM_001135556	1780	Hs.440364	NM_004411	ENSG00000158560	DYNC1I1	DNCI1|DNCIC1	dynein cytoplasmic 1 intermediate chain 1	protein-coding
3727	chr21	43945055	43945317	+	0	NA	intron (NM_018964, intron 3 of 20)	MER21C|LTR|ERVL	11223	NM_001320537	54020	Hs.547009	NM_018964	ENSG00000160190	SLC37A1	G3PP	solute carrier family 37 member 1	protein-coding
6196	chrUn_gl000216	142465	144979	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
5136	chr7	11385215	11385648	+	0	NA	Intergenic	Intergenic	371932	NR_033435	9678	Hs.655688	NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
3527	chr20	29812685	29812714	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-32768	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
2343	chr16	67816394	67816616	+	0	NA	intron (NM_001320238, intron 1 of 12)	AluSx|SINE|Alu	24050	NM_020850	57610	Hs.368569	NM_020850	ENSG00000141084	RANBP10	-	RAN binding protein 10	protein-coding
5034	chr6	128429023	128429151	+	0	NA	intron (NM_001135648, intron 7 of 30)	intron (NM_001135648, intron 7 of 30)	80077	NR_125849	101928140	Hs.656779	NR_125849		LOC101928140	-	uncharacterized LOC101928140	ncRNA
6440	chrY	13843802	13843803	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	689587	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4889	chr6	80519777	80520281	+	0	NA	intron (NR_131786, intron 2 of 4)	intron (NR_131786, intron 2 of 4)	1934	NR_131786	89758	Hs.288213	NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
4113	chr4	24461879	24461990	+	0	NA	intron (NM_001330752, intron 1 of 13)	intron (NM_001330752, intron 1 of 13)	12518	NM_001330751	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
2108	chr15	76690683	76691078	+	0	NA	intron (NM_001145923, intron 27 of 31)	intron (NM_001145923, intron 27 of 31)	61815	NM_145805	64843	Hs.444677	NM_145805	ENSG00000159556	ISL2	-	ISL LIM homeobox 2	protein-coding
3044	chr2	61934940	61934987	+	0	NA	Intergenic	Intergenic	146315	NR_037710	84140	Hs.440466	NM_032180	ENSG00000170264	FAM161A	RP28	family with sequence similarity 161 member A	protein-coding
888	chr11	51583225	51583342	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	68001	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
3771	chr22	26326711	26326794	+	0	NA	intron (NM_001318245, intron 34 of 43)	intron (NM_001318245, intron 34 of 43)	188641	NM_001318245	84700	Hs.417959	NM_032608	ENSG00000133454	MYO18B	KFS4	myosin XVIIIB	protein-coding
6123	chrUn_gl000216	1131	1167	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
1011	chr11	114031020	114031158	+	0	NA	intron (NM_001018011, intron 3 of 6)	intron (NM_001018011, intron 3 of 6)	99801	NM_001018011	7704	Hs.591945	NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
3743	chr22	18688170	18688437	+	0	NA	intron (NR_136570, intron 1 of 11)	AluSc8|SINE|Alu	327	NR_136570	100996415	Hs.645542	NR_136570		LOC100996415	-	uncharacterized LOC100996415	ncRNA
4515	chr5	115831017	115831420	+	0	NA	intron (NM_001300780, intron 5 of 19)	intron (NM_001300780, intron 5 of 19)	48024	NR_109879	101927233	Hs.732850	NR_109879	ENSG00000248445	SEMA6A-AS1	CTB-118N6.3	SEMA6A antisense RNA 1	ncRNA
1754	chr14	61612465	61612768	+	0	NA	Intergenic	Intergenic	135914	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
3683	chr21	37051818	37051838	+	0	NA	Intergenic	L3|LINE|CR1	-41185	NR_030414	768219		NR_030414	ENSG00000211590	MIR802	MIRN802|hsa-mir-802	microRNA 802	ncRNA
5940	chr9	71423592	71423888	+	0	NA	intron (NM_003558, intron 2 of 15)	intron (NM_003558, intron 2 of 15)	28818	NM_138333	116224	Hs.655572	NM_138333	ENSG00000187866	FAM122A	C9orf42	family with sequence similarity 122A	protein-coding
1161	chr12	34842299	34842469	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	667168	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
2093	chr15	73668259	73668322	+	0	NA	Intergenic	Intergenic	-6685	NM_005477	10021	Hs.86941	NM_005477	ENSG00000138622	HCN4	SSS2	hyperpolarization activated cyclic nucleotide gated potassium channel 4	protein-coding
6160	chrUn_gl000216	22084	22729	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
1927	chr14	90910247	90910673	+	0	NA	Intergenic	Intergenic	-11114	NR_033986	400238	Hs.131037	NR_033986	ENSG00000233208	LINC00642	-	long intergenic non-protein coding RNA 642	ncRNA
4779	chr6	37275733	37275737	+	0	NA	intron (NM_017772, intron 8 of 12)	intron (NM_017772, intron 8 of 12)	-46013	NR_046399	9025	Hs.485278	NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding
1380	chr12	119807818	119807821	+	0	NA	intron (NM_178499, intron 1 of 13)	intron (NM_178499, intron 1 of 13)	35302	NM_178499	160777	Hs.98188	NM_178499	ENSG00000183273	CCDC60	-	coiled-coil domain containing 60	protein-coding
2853	chr19	46544235	46544438	+	0	NA	promoter-TSS (NM_001002923)	promoter-TSS (NM_001002923)	-62	NM_001002923	444882	Hs.531310	NM_001002923	ENSG00000204869	IGFL4	-	IGF like family member 4	protein-coding
3406	chr2	227683505	227683788	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	-17025	NM_032276	84236	Hs.471514	NM_032276	ENSG00000144468	RHBDD1	RRP4	rhomboid domain containing 1	protein-coding
5457	chr7	130048751	130049003	+	0	NA	intron (NM_001257158, intron 5 of 9)	intron (NM_001257158, intron 5 of 9)	28665	NM_001868	1357	Hs.2879	NM_001868	ENSG00000091704	CPA1	CPA	carboxypeptidase A1	protein-coding
990	chr11	111317386	111317561	+	0	NA	Intergenic	Intergenic	-28562	NR_046085	100132078	Hs.672662	NR_046085	ENSG00000255428	LOC100132078	-	uncharacterized LOC100132078	ncRNA
349	chr1	169453216	169453372	+	0	NA	intron (NM_006996, intron 1 of 5)	intron (NM_006996, intron 1 of 5)	1914	NM_006996	10560	Hs.30246	NM_006996	ENSG00000117479	SLC19A2	TC1|THMD1|THT1|THTR1|TRMA	solute carrier family 19 member 2	protein-coding
1442	chr13	31620784	31621093	+	0	NA	Intergenic	Intergenic	114104	NM_152325	122046	Hs.124463	NM_152325	ENSG00000175664	TEX26	C13orf26	testis expressed 26	protein-coding
1614	chr13	112332018	112332203	+	0	NA	Intergenic	Intergenic	83754	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA
2218	chr16	33866233	33866754	+	0	NA	Intergenic	(GAGTG)n|Simple_repeat|Simple_repeat	96010	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
2316	chr16	52549393	52549753	+	0	NA	intron (NM_001080430, intron 1 of 6)	intron (NM_001080430, intron 1 of 6)	31233	NM_001080430	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
4949	chr6	96531150	96531333	+	0	NA	intron (NM_006581, intron 1 of 2)	intron (NM_006581, intron 1 of 2)	67396	NM_006581	10690	Hs.49117	NM_006581	ENSG00000172461	FUT9	Fuc-TIX	fucosyltransferase 9	protein-coding
4772	chr6	33313282	33313411	+	0	NA	Intergenic	Intergenic	-22553	NM_001141969	1616	Hs.336916	NM_001350	ENSG00000204209	DAXX	BING2|DAP6|EAP1	death domain associated protein	protein-coding
1743	chr14	59272693	59272793	+	0	NA	Intergenic	Intergenic	-22263	NR_110547	102723742	Hs.232734	NR_110547	ENSG00000258583	LINC01500	-	long intergenic non-protein coding RNA 1500	ncRNA
5162	chr7	28395217	28396140	+	0	NA	intron (NM_182899, intron 1 of 9)	intron (NM_182899, intron 1 of 9)	-56466	NM_182898	9586	Hs.437075	NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5	cAMP responsive element binding protein 5	protein-coding
3970	chr3	132835904	132836262	+	0	NA	intron (NM_001136469, intron 2 of 5)	intron (NM_001136469, intron 2 of 5)	-7582	NM_001282865	66000	Hs.191616	NM_023943	ENSG00000144868	TMEM108	CT124	transmembrane protein 108	protein-coding
5675	chr8	81244449	81244623	+	0	NA	Intergenic	Intergenic	90912	NR_049894	100847056		NR_049894	ENSG00000265588	MIR5708	-	microRNA 5708	ncRNA
4770	chr6	33313152	33313202	+	0	NA	Intergenic	Intergenic	-22384	NM_001141969	1616	Hs.336916	NM_001350	ENSG00000204209	DAXX	BING2|DAP6|EAP1	death domain associated protein	protein-coding
3364	chr2	210360798	210360993	+	0	NA	intron (NM_001039538, intron 1 of 14)	intron (NM_001039538, intron 1 of 14)	72124	NM_001039538	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding
5898	chr9	66832955	66832972	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-90004	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
4109	chr4	23820689	23820789	+	0	NA	intron (NM_013261, intron 7 of 12)	intron (NM_013261, intron 7 of 12)	62176	NM_001330753	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
3251	chr2	145978115	145978307	+	0	NA	Intergenic	Intergenic	552677	NR_033870	401014	Hs.742290	NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
4401	chr5	4516706	4516723	+	0	NA	Intergenic	MIR|SINE|MIR	-256880	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA
3205	chr2	100188340	100188940	+	0	NA	intron (NM_001025108, intron 17 of 23)	intron (NM_001025108, intron 17 of 23)	-82122	NR_135650	51455	Hs.443077	NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1, DNA directed polymerase	protein-coding
4995	chr6	107951135	107951225	+	0	NA	intron (NM_018013, intron 5 of 6)	intron (NM_018013, intron 5 of 6)	102420	NM_001286409	256380	Hs.486109	NM_198081	ENSG00000146285	SCML4	dJ47M23.1	sex comb on midleg-like 4 (Drosophila)	protein-coding
1383	chr12	122595383	122596114	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	-56518	NM_152759	254050	Hs.374856	NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
137	chr1	51099536	51099635	+	0	NA	intron (NM_007051, intron 8 of 18)	intron (NM_007051, intron 8 of 18)	-210466	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
1414	chr12	130034842	130035022	+	0	NA	intron (NM_133448, intron 2 of 8)	intron (NM_133448, intron 2 of 8)	341786	NR_110058	101927735	Hs.569212	NR_110058	ENSG00000256699	LOC101927735	-	uncharacterized LOC101927735	ncRNA
5522	chr7	154671218	154671779	+	0	NA	intron (NM_001936, intron 20 of 25)	MER34B|LTR|ERV1	-48729	NR_024477	100132707	Hs.586358	NR_024476	ENSG00000214106	PAXIP1-AS2	PAXIP1OS	PAXIP1 antisense RNA 2	ncRNA
4504	chr5	99852908	99853086	+	0	NA	Intergenic	L1PBa|LINE|L1	-18012	NM_198507	345757	Hs.356108	NM_198507	ENSG00000174132	FAM174A	HGS_RE408|NS5ATP6|TMEM157|UNQ1912	family with sequence similarity 174 member A	protein-coding
666	chr10	65388722	65388815	+	0	NA	Intergenic	Intergenic	-106933	NM_001322258	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
3794	chr22	37431326	37431557	+	0	NA	Intergenic	LTR48B|LTR|ERV1	-15217	NM_001270483	7263	Hs.474783	NM_003312	ENSG00000128311	TST	RDS	thiosulfate sulfurtransferase	protein-coding
860	chr11	51568843	51569023	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	53651	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
1074	chr11	131181628	131181863	+	0	NA	Intergenic	Intergenic	-58626	NM_001048209	50863	Hs.504352	NM_016522	ENSG00000182667	NTM	HNT|IGLON2|NTRI	neurotrimin	protein-coding
2308	chr16	52503658	52504077	+	0	NA	intron (NM_001080430, intron 1 of 6)	intron (NM_001080430, intron 1 of 6)	76939	NM_001080430	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
4887	chr6	80519498	80519641	+	0	NA	intron (NR_131786, intron 2 of 4)	intron (NR_131786, intron 2 of 4)	2394	NR_131786	89758	Hs.288213	NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
3884	chr3	103637342	103637493	+	0	NA	Intergenic	Intergenic	308688	NR_030330	693127		NR_030330	ENSG00000208032	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA
1063	chr11	127931427	127931674	+	0	NA	Intergenic	Intergenic	460655	NM_005238	2113	Hs.369438	NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
1567	chr13	101942252	101942482	+	0	NA	intron (NM_052867, intron 9 of 43)	intron (NM_052867, intron 9 of 43)	126446	NM_052867	259232	Hs.525146	NM_052867	ENSG00000102452	NALCN	CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1	sodium leak channel, non-selective	protein-coding
1776	chr14	65697312	65697427	+	0	NA	Intergenic	Intergenic	-8304	NR_103769	100128233	Hs.497323	NR_103769	ENSG00000255002	LOC100128233	-	uncharacterized LOC100128233	ncRNA
2565	chr18	3715270	3715364	+	0	NA	intron (NM_001308390, intron 4 of 10)	intron (NM_001308390, intron 4 of 10)	111582	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
2158	chr16	4103486	4103645	+	0	NA	intron (NM_001116, intron 2 of 10)	intron (NM_001116, intron 2 of 10)	62621	NM_001116	115	Hs.391860	NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
3047	chr2	64558413	64558605	+	0	NA	Intergenic	Intergenic	-9384	NR_039632	100616265		NR_039632	ENSG00000283222	MIR4433A	MIR4433|hsa-mir-4433a	microRNA 4433a	ncRNA
2576	chr18	9899489	9899645	+	0	NA	Intergenic	AluJr|SINE|Alu	13844	NM_001098529	84203	Hs.98712	NM_032243	ENSG00000168454	TXNDC2	SPTRX|SPTRX1	thioredoxin domain containing 2	protein-coding
4938	chr6	91521706	91521752	+	0	NA	Intergenic	Intergenic	-224709	NM_003188	6885	Hs.594838	NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
6125	chrUn_gl000216	2697	2740	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
2362	chr16	73870685	73870967	+	0	NA	Intergenic	MSTB2|LTR|ERVL-MaLR	378594	NR_104657	101928035	Hs.39557	NR_104657	ENSG00000261404	LOC101928035	-	uncharacterized LOC101928035	ncRNA
3287	chr2	160373399	160373423	+	0	NA	intron (NM_001329857, intron 2 of 36)	intron (NM_001329857, intron 2 of 36)	-98394	NR_110588	643072	Hs.632541	NR_110587		LOC643072	-	uncharacterized LOC643072	ncRNA
3829	chr3	15355211	15355586	+	0	NA	intron (NM_001018009, intron 2 of 8)	AluJb|SINE|Alu	18738	NM_004844	9467	Hs.257761	NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
2796	chr18	70207507	70207563	+	0	NA	intron (NM_182511, intron 3 of 4)	intron (NM_182511, intron 3 of 4)	4188	NM_182511	147381	Hs.569851	NM_182511	ENSG00000141668	CBLN2	-	cerebellin 2 precursor	protein-coding
1601	chr13	110359433	110359606	+	0	NA	Intergenic	Intergenic	-21102	NR_103846	101409253	Hs.578072	NR_103846	ENSG00000234854	LINC00676	-	long intergenic non-protein coding RNA 676	ncRNA
5041	chr6	135572539	135572796	+	0	NA	Intergenic	Intergenic	12369	NR_030317	693126		NR_030317	ENSG00000207689	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA
323	chr1	150135506	150135687	+	0	NA	intron (NR_135098, intron 1 of 3)	(CA)n|Simple_repeat|Simple_repeat	2670	NR_135098	105371433	Hs.599366	NR_135098		LOC105371433	-	uncharacterized LOC105371433	ncRNA
1834	chr14	75866968	75867264	+	0	NA	Intergenic	Intergenic	-27393	NM_001135047	122953	Hs.196482	NM_130469	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
2142	chr15	101667607	101667688	+	0	NA	Intergenic	Intergenic	124490	NM_014918	22856	Hs.110488	NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
545	chr10	38777908	38777961	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	60860	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
5292	chr7	68814170	68814664	+	0	NA	Intergenic	Intergenic	248064	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
2467	chr17	36571844	36571900	+	0	NA	Intergenic	Intergenic	-12848	NM_001199417	57636	Hs.374446	NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
2733	chr18	51773494	51773780	+	0	NA	Intergenic	Intergenic	-22212	NM_007195	11201	Hs.438533	NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB	DNA polymerase iota	protein-coding
5196	chr7	44229017	44229132	+	0	NA	promoter-TSS (NM_000162)	promoter-TSS (NM_000162)	-52	NM_000162	2645	Hs.1270	NM_000162	ENSG00000106633	GCK	FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2	glucokinase	protein-coding
187	chr1	82314412	82314583	+	0	NA	intron (NM_001330645, intron 2 of 20)	intron (NM_001330645, intron 2 of 20)	48415	NM_012302	23266	Hs.24212	NM_012302	ENSG00000117114	ADGRL2	CIRL2|CL2|LEC1|LPHH1|LPHN2	adhesion G protein-coupled receptor L2	protein-coding
4625	chr5	177485120	177485339	+	0	NA	Intergenic	Intergenic	51262	NR_038353	653316	Hs.652193	NM_001079527	ENSG00000204677	FAM153C	NY-REN-7-like	family with sequence similarity 153, member C, pseudogene	pseudo
2326	chr16	53957056	53957333	+	0	NA	intron (NM_001080432, intron 7 of 8)	intron (NM_001080432, intron 7 of 8)	-116111	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1	ncRNA
6419	chrY	13819896	13819926	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	713478	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
6408	chrY	13810757	13810805	+	0	NA	Intergenic	Intergenic	722608	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1283	chr12	101961817	101961939	+	0	NA	Intergenic	Intergenic	-26831	NM_001254721	4604	Hs.654589	NM_002465	ENSG00000196091	MYBPC1	LCCS4|MYBPCC|MYBPCS	myosin binding protein C, slow type	protein-coding
3089	chr2	89830405	89830455	+	0	NA	Intergenic	Intergenic	718546	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
212	chr1	87666647	87667062	+	0	NA	Intergenic	Intergenic	-11498	NM_001290053	101927844	Hs.694591	NM_001290053		LOC101927844	-	uncharacterized LOC101927844	protein-coding
3384	chr2	217672824	217673096	+	0	NA	Intergenic	Intergenic	51822	NM_003284	7141	Hs.3017	NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1	protein-coding
2436	chr17	25265992	25266156	+	0	NA	Intergenic	Intergenic	150193	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
1331	chr12	107525716	107526773	+	0	NA	Intergenic	Intergenic	-38609	NM_004075	1407	Hs.151573	NM_004075	ENSG00000008405	CRY1	PHLL1	cryptochrome circadian clock 1	protein-coding
6390	chrY	13688245	13688321	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	845106	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4019	chr3	176448663	176448747	+	0	NA	Intergenic	MIRb|SINE|MIR	86084	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
6245	chrX	6067312	6067391	+	0	NA	intron (NM_001282145, intron 3 of 6)	intron (NM_001282145, intron 3 of 6)	-77048	NR_136577	105373156	Hs.21107	NR_136577		LOC105373156	-	uncharacterized LOC105373156	ncRNA
5108	chr7	3096426	3096533	+	0	NA	Intergenic	Intergenic	-12900	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|PPBL	caspase recruitment domain family member 11	protein-coding
2383	chr16	82363781	82363787	+	0	NA	Intergenic	MIRb|SINE|MIR	-159955	NM_005792	10200	Hs.344400	NM_005792	ENSG00000135698	MPHOSPH6	MPP|MPP-6|MPP6	M-phase phosphoprotein 6	protein-coding
1305	chr12	105024096	105024430	+	0	NA	intron (NM_001173982, intron 2 of 2)	intron (NM_001173982, intron 2 of 2)	38852	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
5416	chr7	125156600	125156701	+	0	NA	Intergenic	Intergenic	-252305	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
961	chr11	78065875	78066113	+	0	NA	intron (NM_080491, intron 1 of 9)	intron (NM_080491, intron 1 of 9)	-13068	NM_012296	9846	Hs.429434	NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
4539	chr5	125456651	125456790	+	0	NA	Intergenic	Intergenic	-58550	NR_105042	102546228	Hs.582529	NR_105042	ENSG00000248107	LINC02039	-	long intergenic non-protein coding RNA 2039	ncRNA
6378	chrY	13459767	13459770	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1073621	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
2686	chr18	42525819	42526525	+	0	NA	intron (NM_015559, intron 3 of 5)	intron (NM_015559, intron 3 of 5)	23959	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
1662	chr14	31020694	31020961	+	0	NA	Intergenic	Intergenic	-7502	NM_001308097	55632	Hs.509008	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
2882	chr2	1183346	1183517	+	0	NA	intron (NM_018968, intron 8 of 16)	L1MEe|LINE|L1	-233802	NM_001206744	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
3234	chr2	130726073	130726393	+	0	NA	intron (NR_036537, intron 5 of 5)	intron (NR_036537, intron 5 of 5)	-11002	NM_032144	84084	Hs.591552	NM_032144	ENSG00000222014	RAB6C	WTH3	RAB6C, member RAS oncogene family	protein-coding
6465	chrY	13868066	13868318	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	665197	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
574	chr10	38880829	38881316	+	0	NA	Intergenic	HSATII|Satellite|Satellite	-108655	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
5365	chr7	105712749	105712758	+	0	NA	Intergenic	Intergenic	40038	NM_182715	6856	Hs.80919	NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
660	chr10	42818295	42818338	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	45177	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
3397	chr2	221814202	221814376	+	0	NA	Intergenic	Intergenic	622789	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
977	chr11	92950059	92950257	+	0	NA	Intergenic	Intergenic	-19017	NM_152313	120103	Hs.148766	NM_152313	ENSG00000180773	SLC36A4	PAT4	solute carrier family 36 member 4	protein-coding
4916	chr6	90202140	90202214	+	0	NA	intron (NM_014942, intron 1 of 15)	intron (NM_014942, intron 1 of 15)	59280	NM_001242809	22881	Hs.702213	NM_014942	ENSG00000135299	ANKRD6	-	ankyrin repeat domain 6	protein-coding
566	chr10	38818662	38818813	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	101663	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
5093	chr6	169989649	169989664	+	0	NA	intron (NM_182552, intron 23 of 25)	intron (NM_182552, intron 23 of 25)	112503	NM_182552	253769	Hs.131903	NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
3928	chr3	123152787	123153040	+	0	NA	intron (NM_183357, intron 1 of 20)	intron (NM_183357, intron 1 of 20)	14479	NM_183357	111	Hs.593292	NM_183357	ENSG00000173175	ADCY5	AC5|FDFM	adenylate cyclase 5	protein-coding
4067	chr3	193715834	193715993	+	0	NA	intron (NR_033944, intron 1 of 2)	Charlie22a|DNA|hAT-Charlie	-3886	NR_027764	100128023	Hs.730112	NR_027764		DPPA2P3	-	developmental pluripotency associated 2 pseudogene 3	pseudo
5687	chr8	82505731	82506572	+	0	NA	Intergenic	Intergenic	-62526	NM_001105281	646486	Hs.586370	NM_001105281	ENSG00000197416	FABP12	-	fatty acid binding protein 12	protein-coding
2765	chr18	57043233	57043456	+	0	NA	Intergenic	Intergenic	-16836	NM_005570	3998	Hs.465295	NM_005570	ENSG00000074695	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	lectin, mannose binding 1	protein-coding
2299	chr16	51827167	51827201	+	0	NA	Intergenic	Intergenic	30754	NR_110916	101927364	Hs.133120	NR_110916	ENSG00000260057	LINC01571	-	long intergenic non-protein coding RNA 1571	ncRNA
108	chr1	42806594	42806949	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-5223	NM_001198850	22887	Hs.26023	NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
2820	chr19	13023224	13023771	+	0	NA	intron (NM_001105578, intron 2 of 5)	intron (NM_001105578, intron 2 of 5)	6589	NM_001105578	256126	Hs.655173	NM_001105578	ENSG00000161860	SYCE2	CESC1	synaptonemal complex central element protein 2	protein-coding
604	chr10	39108897	39108903	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	119173	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
4940	chr6	91522005	91522120	+	0	NA	Intergenic	Intergenic	-225042	NM_003188	6885	Hs.594838	NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
6475	chrY	13869670	13869792	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	663658	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
477	chr1	224200117	224200128	+	0	NA	intron (NR_136593, intron 2 of 4)	(GAATG)n|Satellite|Satellite	19690	NR_136593	100287497	Hs.568390	NR_136590		LOC100287497	-	septin 7 pseudogene	pseudo
4880	chr6	80094384	80094561	+	0	NA	Intergenic	MER68|LTR|ERVL	-71371	NR_130915	80078		NR_130915		LCAL1	onco-lncRNA-27	lung cancer associated lncRNA 1	ncRNA
1338	chr12	113554131	113554444	+	0	NA	intron (NM_004658, intron 9 of 21)	intron (NM_004658, intron 9 of 21)	19117	NM_001301202	8437	Hs.528693	NM_004658	ENSG00000111344	RASAL1	RASAL	RAS protein activator like 1	protein-coding
2623	chr18	31382967	31383020	+	0	NA	Intergenic	Intergenic	224452	NM_030632	80816	Hs.464876	NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	additional sex combs like 3, transcriptional regulator	protein-coding
330	chr1	155904378	155905263	+	0	NA	promoter-TSS (NM_014949)	promoter-TSS (NM_014949)	-587	NM_014949	22889	Hs.24656	NM_014949	ENSG00000132680	KIAA0907	BLOM7|SNORA80EHG	KIAA0907	protein-coding
5734	chr8	100110301	100110727	+	0	NA	intron (NM_152564, intron 4 of 61)	L1MD2|LINE|L1	85020	NR_047582	157680	Hs.191540	NM_015243	ENSG00000132549	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B	protein-coding
360	chr1	180555903	180556144	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	27913	NR_125716	148756		NR_125716	ENSG00000236719	OVAAL	LINC01131|OVAL	ovarian adenocarcinoma amplified long non-coding RNA	ncRNA
1857	chr14	78348282	78348453	+	0	NA	intron (NM_020421, intron 4 of 10)	intron (NM_020421, intron 4 of 10)	81941	NM_020421	57143	Hs.413208	NM_020421	ENSG00000063761	ADCK1	-	aarF domain containing kinase 1	protein-coding
3416	chr2	229948207	229948640	+	0	NA	intron (NM_001330157, intron 1 of 1)	intron (NM_001330157, intron 1 of 1)	148385	NM_001330156	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
5254	chr7	61794176	61794204	+	0	NA	Intergenic	HSATII|Satellite|Satellite	970244	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
3160	chr2	91598171	91598488	+	0	NA	Intergenic	HSATII|Satellite|Satellite	249646	NR_027238	654342	Hs.469287	NR_027238		LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
3279	chr2	159830052	159830211	+	0	NA	intron (NM_033394, intron 1 of 26)	intron (NM_033394, intron 1 of 26)	4985	NM_033394	85461	Hs.61590	NM_033394	ENSG00000115183	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
2321	chr16	52586788	52586855	+	0	NA	intron (NR_033920, intron 3 of 3)	intron (NR_033920, intron 3 of 3)	-5107	NM_001146188	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
3377	chr2	213000501	213000624	+	0	NA	intron (NM_005235, intron 1 of 27)	intron (NM_005235, intron 1 of 27)	290522	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
5798	chr8	125792679	125793021	+	0	NA	Intergenic	L2a|LINE|L2	-41377	NR_039806	100616221		NR_039806	ENSG00000283609	MIR4662A	-	microRNA 4662a	ncRNA
1076	chr11	131182046	131182280	+	0	NA	Intergenic	Intergenic	-58208	NM_001048209	50863	Hs.504352	NM_016522	ENSG00000182667	NTM	HNT|IGLON2|NTRI	neurotrimin	protein-coding
3082	chr2	70360116	70360483	+	0	NA	Intergenic	Intergenic	-7851	NR_024444	100133985	Hs.135528	NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
766	chr11	12777413	12777636	+	0	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	81555	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
4595	chr5	153457944	153458111	+	0	NA	Intergenic	Intergenic	39508	NM_001135037	4238	Hs.432818	NM_005927	ENSG00000037749	MFAP3	-	microfibrillar associated protein 3	protein-coding
449	chr1	211877192	211877493	+	0	NA	Intergenic	Intergenic	-28370	NM_001204182	4751	Hs.153704	NM_002497	ENSG00000117650	NEK2	HsPK21|NEK2A|NLK1|PPP1R111|RP67	NIMA related kinase 2	protein-coding
1574	chr13	102693467	102693632	+	0	NA	intron (NM_001321945, intron 2 of 5)	MER20B|DNA|hAT-Charlie	4805	NR_039854	100616239		NR_039854	ENSG00000264482	MIR4705	-	microRNA 4705	ncRNA
1579	chr13	107448791	107449005	+	0	NA	Intergenic	Intergenic	142670	NR_047026	100874173	Hs.569297	NR_047026	ENSG00000230156	LINC00443	-	long intergenic non-protein coding RNA 443	ncRNA
3506	chr20	22444363	22444364	+	0	NA	Intergenic	Intergenic	-43082	NR_027089	284788	Hs.651993	NR_027089	ENSG00000204684	LOC284788	-	uncharacterized LOC284788	ncRNA
4587	chr5	150849397	150850005	+	0	NA	intron (NM_001308151, intron 8 of 8)	intron (NM_001308151, intron 8 of 8)	22544	NM_078483	206358	Hs.269004	NM_078483	ENSG00000123643	SLC36A1	Dct1|LYAAT1|PAT1|TRAMD3	solute carrier family 36 member 1	protein-coding
6254	chrX	9079004	9079422	+	0	NA	Intergenic	Intergenic	-77045	NM_205849	171483	Hs.733351	NM_173696	ENSG00000177138	FAM9B	TEX39B	family with sequence similarity 9 member B	protein-coding
4484	chr5	72578448	72578471	+	0	NA	Intergenic	Intergenic	-80671	NR_134291	340090	Hs.434311	NR_134291		LOC340090	-	uncharacterized LOC340090	ncRNA
682	chr10	76707834	76708214	+	0	NA	intron (NM_012330, intron 3 of 17)	intron (NM_012330, intron 3 of 17)	35480	NR_134476	101929165	Hs.670533	NR_134476		LOC101929165	-	uncharacterized LOC101929165	ncRNA
353	chr1	170114751	170114959	+	0	NA	promoter-TSS (NM_001136107)	promoter-TSS (NM_001136107)	-333	NM_001136107	149281	Hs.553612	NM_001136107	ENSG00000203740	METTL11B	C1orf184|HOMT1B|NTM1B	methyltransferase like 11B	protein-coding
2971	chr2	33284641	33284767	+	0	NA	intron (NM_206943, intron 3 of 33)	intron (NM_206943, intron 3 of 33)	-74960	NM_001166264	4052	Hs.619315	NM_000627	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
5774	chr8	109961000	109961460	+	0	NA	Intergenic	L2b|LINE|L2	-138423	NM_003301	7201	Hs.3022	NM_003301	ENSG00000174417	TRHR	TRH-R	thyrotropin releasing hormone receptor	protein-coding
375	chr1	183517336	183517483	+	0	NA	intron (NM_001331007, intron 19 of 23)	intron (NM_001331007, intron 19 of 23)	42330	NM_001190794	4688	Hs.587558	NM_000433	ENSG00000116701	NCF2	NCF-2|NOXA2|P67-PHOX|P67PHOX	neutrophil cytosolic factor 2	protein-coding
3633	chr21	10833762	10833784	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	157170	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2989	chr2	40478350	40478619	+	0	NA	intron (NM_021097, intron 1 of 9)	intron (NM_021097, intron 1 of 9)	178960	NM_001112801	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding
2409	chr17	4119821	4120092	+	0	NA	intron (NR_047571, intron 3 of 23)	intron (NR_047571, intron 3 of 23)	47186	NM_001257999	51479	Hs.696087	NM_016376	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
2833	chr19	19892919	19893066	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-5770	NR_026956	284440	Hs.665307	NR_026956		LINC00663	-	long intergenic non-protein coding RNA 663	ncRNA
3944	chr3	124979721	124979914	+	0	NA	intron (NM_021964, intron 7 of 8)	L2|LINE|L2	-48208	NM_024628	84561	Hs.658514	NM_024628	ENSG00000221955	SLC12A8	CCC9	solute carrier family 12 member 8	protein-coding
4189	chr4	49633965	49635137	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	645892	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3914	chr3	112870771	112870895	+	0	NA	intron (NR_110823, intron 3 of 3)	intron (NR_110823, intron 3 of 3)	15745	NR_110823	101929717	Hs.638426	NR_110823	ENSG00000243795	LINC02044	-	long intergenic non-protein coding RNA 2044	ncRNA
3692	chr21	37347057	37347434	+	0	NA	intron (NR_110418, intron 4 of 5)	intron (NR_110418, intron 4 of 5)	29720	NR_110418	101928269	Hs.589909	NR_110418		LOC101928269	-	uncharacterized LOC101928269	ncRNA
5770	chr8	109951396	109951789	+	0	NA	Intergenic	L1ME3|LINE|L1	-148061	NM_003301	7201	Hs.3022	NM_003301	ENSG00000174417	TRHR	TRH-R	thyrotropin releasing hormone receptor	protein-coding
5406	chr7	114870957	114871076	+	0	NA	intron (NR_126407, intron 1 of 4)	intron (NR_126407, intron 1 of 4)	393	NR_126407	104355291		NR_126407	ENSG00000233607	LINC01392	-	long intergenic non-protein coding RNA 1392	ncRNA
3726	chr21	43944831	43945054	+	0	NA	intron (NM_018964, intron 3 of 20)	MER21C|LTR|ERVL	10979	NM_001320537	54020	Hs.547009	NM_018964	ENSG00000160190	SLC37A1	G3PP	solute carrier family 37 member 1	protein-coding
501	chr1	234859828	234860216	+	0	NA	intron (NR_038856, intron 1 of 2)	intron (NR_038856, intron 1 of 2)	233	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
2944	chr2	10873323	10873734	+	0	NA	intron (NM_144583, intron 3 of 12)	intron (NM_144583, intron 3 of 12)	11753	NM_144583	245973	Hs.580464	NM_144583	ENSG00000143882	ATP6V1C2	ATP6C2|VMA5	ATPase H+ transporting V1 subunit C2	protein-coding
5944	chr9	71720383	71720683	+	0	NA	Intergenic	Intergenic	-15647	NM_001170414	9414	Hs.50382	NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
3144	chr2	90372795	90373073	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1261050	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
5059	chr6	143834763	143834991	+	0	NA	Intergenic	Intergenic	-1857	NM_032020	2519	Hs.17680	NM_032020	ENSG00000001036	FUCA2	dJ20N2.5	fucosidase, alpha-L- 2, plasma	protein-coding
2650	chr18	34273922	34274244	+	0	NA	intron (NM_025135, intron 14 of 24)	intron (NM_025135, intron 14 of 24)	-30702	NR_132982	105372071		NR_132982		LOC105372071	-	uncharacterized LOC105372071	ncRNA
155	chr1	61477272	61477703	+	0	NA	Intergenic	Intergenic	-41039	NR_110618	100996570	Hs.46616	NR_110617	ENSG00000237928	NFIA-AS2	-	NFIA antisense RNA 2	ncRNA
387	chr1	187846509	187846769	+	0	NA	Intergenic	Intergenic	433879	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA
1913	chr14	89743306	89743513	+	0	NA	intron (NM_001085471, intron 4 of 6)	intron (NM_001085471, intron 4 of 6)	140045	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
626	chr10	42397638	42397785	+	0	NA	Intergenic	L1P1|LINE|L1	465782	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
4944	chr6	92369953	92370019	+	0	NA	intron (NR_104154, intron 2 of 3)	LTR82A|LTR|ERVL	30160	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA
6175	chrUn_gl000216	54167	54287	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
257	chr1	117015229	117015481	+	0	NA	intron (NR_125973, intron 2 of 3)	intron (NR_125973, intron 2 of 3)	6093	NR_125972	101929023	Hs.668091	NR_125972	ENSG00000233154	LINC01762	-	long intergenic non-protein coding RNA 1762	ncRNA
951	chr11	74352278	74352853	+	0	NA	non-coding (NR_046409, exon 11 of 11)	non-coding (NR_046409, exon 11 of 11)	48915	NR_046410	10714	Hs.82502	NM_006591	ENSG00000077514	POLD3	P66|P68|PPP1R128	DNA polymerase delta 3, accessory subunit	protein-coding
4750	chr6	24584550	24584691	+	0	NA	intron (NM_014809, intron 4 of 20)	intron (NM_014809, intron 4 of 20)	-1165	NM_001252328	9856	Hs.26441	NM_014809	ENSG00000137261	KIAA0319	DYLX2|DYX2|NMIG	KIAA0319	protein-coding
85	chr1	38528434	38528718	+	0	NA	Intergenic	Intergenic	-16126	NM_002699	5453	Hs.1837	NM_002699	ENSG00000185668	POU3F1	OCT6|OTF6|SCIP	POU class 3 homeobox 1	protein-coding
809	chr11	20509957	20509980	+	0	NA	intron (NM_005788, intron 13 of 15)	intron (NM_005788, intron 13 of 15)	100892	NM_005788	10196	Hs.152337	NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
1156	chr12	34841724	34841745	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	666518	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
2200	chr16	23291159	23291270	+	0	NA	Intergenic	Intergenic	-22377	NM_000336	6338	Hs.414614	NM_000336	ENSG00000168447	SCNN1B	BESC1|ENaCb|ENaCbeta|SCNEB	sodium channel epithelial 1 beta subunit	protein-coding
3057	chr2	67840718	67840954	+	0	NA	Intergenic	Intergenic	211858	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
3614	chr21	10805263	10805303	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	185660	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
736	chr10	105309186	105309364	+	0	NA	intron (NM_004210, intron 1 of 5)	intron (NM_004210, intron 1 of 5)	-32076	NR_120675	102724341	Hs.599425	NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
3812	chr22	47080714	47080763	+	0	NA	3' UTR (NM_022766, exon 13 of 13)	3' UTR (NM_022766, exon 13 of 13)	53414	NM_022766	64781	Hs.200668	NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
539	chr10	38776373	38776563	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	59394	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
5569	chr8	25856472	25856476	+	0	NA	intron (NM_022659, intron 6 of 15)	intron (NM_022659, intron 6 of 15)	46166	NM_022659	64641	Hs.491292	NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	early B-cell factor 2	protein-coding
2847	chr19	32965378	32965760	+	0	NA	intron (NM_207325, intron 16 of 18)	AluSx1|SINE|Alu	68547	NM_207325	147991	Hs.194392	NM_207325	ENSG00000178904	DPY19L3	-	dpy-19 like 3 (C. elegans)	protein-coding
5023	chr6	113964342	113964492	+	0	NA	intron (NR_125844, intron 1 of 2)	intron (NR_125844, intron 1 of 2)	6860	NR_125844	101927686	Hs.402044	NR_125844	ENSG00000230943	LOC101927686	-	uncharacterized LOC101927686	ncRNA
3233	chr2	125300872	125301006	+	0	NA	intron (NM_130773, intron 10 of 23)	intron (NM_130773, intron 10 of 23)	518075	NM_130773	129684	Hs.660653	NM_130773	ENSG00000155052	CNTNAP5	caspr5	contactin associated protein like 5	protein-coding
3339	chr2	191418472	191418510	+	0	NA	Intergenic	Intergenic	-19023	NR_136298	100131211	Hs.659824	NM_001142645	ENSG00000189362	NEMP2	TMEM194B	nuclear envelope integral membrane protein 2	protein-coding
6347	chrX	152371992	152372148	+	0	NA	Intergenic	L1MB5|LINE|L1	33811	NM_032882	84968	Hs.533301	NM_032882	ENSG00000235961	PNMA6A	MA6|PNMA6|PNMA6C	paraneoplastic Ma antigen family member 6A	protein-coding
5012	chr6	111862491	111862648	+	0	NA	intron (NR_034109, intron 1 of 1)	intron (NR_034109, intron 1 of 1)	25994	NM_001164283	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
4369	chr4	182426629	182426632	+	0	NA	Intergenic	Intergenic	-346328	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
520	chr10	501424	501826	+	0	NA	intron (NM_014974, intron 3 of 36)	intron (NM_014974, intron 3 of 36)	-173599	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
1698	chr14	40545236	40545256	+	0	NA	Intergenic	Intergenic	-643542	NM_203301	254170	Hs.146632	NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
2865	chr19	49906462	49907086	+	0	NA	intron (NM_144688, intron 9 of 19)	MLT1J|LTR|ERVL-MaLR	15299	NM_144688	147872	Hs.662085	NM_144688	ENSG00000161609	CCDC155	KASH5	coiled-coil domain containing 155	protein-coding
4533	chr5	124820425	124820780	+	0	NA	Intergenic	Intergenic	-8352	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
3820	chr3	2004146	2004270	+	0	NA	Intergenic	Intergenic	-136342	NM_175607	152330	Hs.298705	NM_175607	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
4617	chr5	174890644	174890898	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-14730	NM_001322977	94081	Hs.369440	NM_022754	ENSG00000164466	SFXN1	TCC	sideroflexin 1	protein-coding
57	chr1	30351263	30351363	+	0	NA	Intergenic	Intergenic	159146	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
2642	chr18	32287437	32287648	+	0	NA	intron (NM_001128175, intron 2 of 11)	intron (NM_001128175, intron 2 of 11)	-2654	NM_032978	1837	Hs.643454	NM_001390	ENSG00000134769	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin alpha	protein-coding
5867	chr9	9683950	9684203	+	0	NA	intron (NM_002839, intron 7 of 45)	intron (NM_002839, intron 7 of 45)	-115316	NR_135135	105375972	Hs.738242	NR_135135	ENSG00000230920	LOC105375972	-	uncharacterized LOC105375972	ncRNA
2354	chr16	72918343	72918584	+	0	NA	intron (NM_001164766, intron 3 of 8)	intron (NM_001164766, intron 3 of 8)	163811	NM_006885	463	Hs.598297	NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
4714	chr6	21390632	21390744	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	121435	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
3479	chr20	12571781	12571856	+	0	NA	Intergenic	L2|LINE|L2	345793	NR_109872	102606466	Hs.602196	NR_109872		LOC102606466	-	uncharacterized LOC102606466	ncRNA
3790	chr22	35822874	35822980	+	0	NA	Intergenic	Charlie21a|DNA|hAT-Charlie	26811	NM_006739	4174	Hs.517582	NM_006739	ENSG00000100297	MCM5	CDC46|P1-CDC46	minichromosome maintenance complex component 5	protein-coding
3660	chr21	11186107	11186369	+	0	NA	Intergenic	HSATI|Satellite|Satellite	-87301	NM_001187	574	Hs.545789	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
5494	chr7	141258311	141258635	+	0	NA	intron (NM_018238, intron 2 of 15)	L1MB2|LINE|L1	7395	NM_018238	55750	Hs.743318	NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
3435	chr2	236826175	236826380	+	0	NA	intron (NM_014914, intron 11 of 16)	intron (NM_014914, intron 11 of 16)	250375	NM_001485	2637	Hs.184945	NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
175	chr1	72375013	72375038	+	0	NA	intron (NM_173808, intron 2 of 6)	intron (NM_173808, intron 2 of 6)	-72330	NR_046218	100852409	Hs.681780	NR_046218	ENSG00000228853	NEGR1-IT1	-	NEGR1 intronic transcript 1	ncRNA
584	chr10	39079567	39079570	+	0	NA	Intergenic	Intergenic	89841	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
3307	chr2	172410691	172410839	+	0	NA	intron (NM_024843, intron 3 of 3)	MER51A|LTR|ERV1	31899	NM_001127383	79901	Hs.221941	NM_024843	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
35	chr1	11623386	11623651	+	0	NA	Intergenic	Intergenic	-46070	NR_104624	101929181	Hs.568616	NR_104624	ENSG00000235643	LINC01647	-	long intergenic non-protein coding RNA 1647	ncRNA
6133	chrUn_gl000216	7575	7729	+	0	NA	NA	Intergenic	NA	NA								
2453	chr17	30342726	30342763	+	0	NA	intron (NM_001321350, intron 1 of 14)	intron (NM_001321350, intron 1 of 14)	-5411	NM_052888	114659	Hs.514071	NM_052888	ENSG00000185158	LRRC37B	LRRC37	leucine rich repeat containing 37B	protein-coding
1882	chr14	82955648	82955655	+	0	NA	Intergenic	L2b|LINE|L2	-866246	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
1421	chr13	22213622	22213733	+	0	NA	Intergenic	Intergenic	-31538	NM_002010	2254	Hs.111	NM_002010	ENSG00000102678	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
4033	chr3	177520050	177520075	+	0	NA	Intergenic	Intergenic	-14591	NR_110826	102724550	Hs.570526	NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
665	chr10	65388498	65388721	+	0	NA	Intergenic	Intergenic	-106774	NM_001322258	221037	Hs.413416	NM_004241	ENSG00000171988	JMJD1C	KDM3C|TRIP-8|TRIP8	jumonji domain containing 1C	protein-coding
2827	chr19	14665622	14665774	+	0	NA	intron (NM_001321170, intron 2 of 13)	AluSc|SINE|Alu	17191	NM_004146	4713	Hs.532853	NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
6321	chrX	79610623	79610923	+	0	NA	intron (NM_001170574, intron 3 of 4)	L1P4e|LINE|L1	19770	NM_001170574	169966	Hs.367959	NM_152630	ENSG00000174016	FAM46D	CT1.26|CT112	family with sequence similarity 46 member D	protein-coding
3021	chr2	51239983	51240552	+	0	NA	intron (NM_001330081, intron 2 of 5)	intron (NM_001330081, intron 2 of 5)	19407	NM_001330085	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
1476	chr13	44792371	44792969	+	0	NA	Intergenic	Intergenic	-22334	NR_107046	102465876		NR_107046	ENSG00000276319	MIR8079	hsa-mir-8079	microRNA 8079	ncRNA
2758	chr18	55582932	55582971	+	0	NA	Intergenic	Intergenic	-112624	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
1207	chr12	67926308	67926423	+	0	NA	intron (NR_103861, intron 1 of 2)	intron (NR_103861, intron 1 of 2)	12503	NR_103861	100507175	Hs.505986	NR_103861	ENSG00000203585	LOC100507175	-	uncharacterized LOC100507175	ncRNA
2641	chr18	32287392	32287436	+	0	NA	intron (NM_001128175, intron 2 of 11)	intron (NM_001128175, intron 2 of 11)	-2782	NM_032978	1837	Hs.643454	NM_001390	ENSG00000134769	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin alpha	protein-coding
2670	chr18	37405346	37405669	+	0	NA	Intergenic	Intergenic	-73548	NR_024391	647946	Hs.649350	NR_024391	ENSG00000267374	MIR924HG	LINC00669	MIR924 host gene	ncRNA
5100	chr6	170854430	170854463	+	0	NA	intron (NM_002793, intron 3 of 5)	intron (NM_002793, intron 3 of 5)	7971	NM_002793	5689	Hs.352768	NM_002793	ENSG00000008018	PSMB1	HC5|PMSB1|PSC5	proteasome subunit beta 1	protein-coding
3007	chr2	46485060	46485185	+	0	NA	Intergenic	Intergenic	-39419	NM_001430	2034	Hs.468410	NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
904	chr11	51590181	51590273	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	74945	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
930	chr11	70759645	70759709	+	0	NA	intron (NM_012309, intron 7 of 22)	intron (NM_012309, intron 7 of 22)	-41204	NR_037437	100500844		NR_037437	ENSG00000263744	MIR3664	mir-3664	microRNA 3664	ncRNA
3848	chr3	42861180	42861545	+	0	NA	intron (NM_001296, intron 2 of 2)	intron (NM_001296, intron 2 of 2)	10398	NM_001296	1238	Hs.146346	NM_001296	ENSG00000144648	ACKR2	CCBP2|CCR10|CCR9|CMKBR9|D6|hD6	atypical chemokine receptor 2	protein-coding
5274	chr7	64954172	64954190	+	0	NA	Intergenic	HSATII|Satellite|Satellite	115469	NM_007139	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
2972	chr2	33284768	33284851	+	0	NA	intron (NM_206943, intron 3 of 33)	intron (NM_206943, intron 3 of 33)	-74855	NM_001166264	4052	Hs.619315	NM_000627	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
648	chr10	42815337	42815361	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	48144	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
2006	chr15	40384867	40385115	+	0	NA	intron (NM_001003943, intron 3 of 3)	intron (NM_001003943, intron 3 of 3)	13296	NM_001003942	90427	Hs.591104	NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
2245	chr16	33899988	33900054	+	0	NA	Intergenic	AluJo|SINE|Alu	62482	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
3178	chr2	92295496	92298242	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	167710	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
4453	chr5	49405637	49405639	+	0	NA	Intergenic	Intergenic	331596	NM_198449	133418	Hs.561411	NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
2130	chr15	93374904	93375065	+	0	NA	Intergenic	Intergenic	36270	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
4973	chr6	105708050	105708397	+	0	NA	Intergenic	L4|LINE|RTE	-80365	NM_022361	64208	Hs.458336	NM_022361	ENSG00000132429	POPDC3	POP3|bA355M14.1	popeye domain containing 3	protein-coding
1028	chr11	115907063	115907275	+	0	NA	Intergenic	Intergenic	-276251	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
198	chr1	85603572	85603818	+	0	NA	Intergenic	Intergenic	4218	NR_039619	100616481		NR_039619	ENSG00000266110	MIR4423	mir-4423	microRNA 4423	ncRNA
1589	chr13	107881886	107881954	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	301676	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
2550	chr17_gl000205_random	87948	88012	+	0	NA	Intergenic	Intergenic	-28643	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo
6240	chrUn_gl000228	116428	117913	+	0	NA	intron (NR_137167, intron 2 of 5)	BSR/Beta|Satellite|Satellite	4565	NM_001306068	100288687	Hs.728749	NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
1059	chr11	127510497	127510602	+	0	NA	Intergenic	Intergenic	369584	NR_120580	101929497	Hs.737442	NR_120580	ENSG00000273409	LOC101929497	-	uncharacterized LOC101929497	ncRNA
2683	chr18	42432525	42432647	+	0	NA	intron (NM_001130110, intron 2 of 3)	MIRc|SINE|MIR	117545	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
5206	chr7	51206038	51206331	+	0	NA	intron (NM_001287438, intron 5 of 7)	intron (NM_001287438, intron 5 of 7)	178374	NM_015198	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
3713	chr21	40358266	40358416	+	0	NA	Intergenic	Intergenic	-8641	NR_109962	101928435	Hs.385528	NR_109962	ENSG00000232837	LINC01700	-	long intergenic non-protein coding RNA 1700	ncRNA
3349	chr2	206637546	206637756	+	0	NA	intron (NM_201266, intron 15 of 16)	intron (NM_201266, intron 15 of 16)	90427	NM_201264	8828	Hs.471200	NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
913	chr11	57567900	57567957	+	0	NA	intron (NM_001085461, intron 6 of 18)	AluSx1|SINE|Alu	38694	NM_001085467	1500	Hs.166011	NM_001331	ENSG00000198561	CTNND1	CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN)	catenin delta 1	protein-coding
3644	chr21	10844118	10844303	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	146733	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2019	chr15	48061114	48061245	+	0	NA	intron (NM_153618, intron 18 of 18)	intron (NM_153618, intron 18 of 18)	50493	NM_153618	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding
3983	chr3	155222882	155223056	+	0	NA	intron (NM_001130961, intron 11 of 23)	intron (NM_001130961, intron 11 of 23)	171136	NM_001130961	23007	Hs.567423	NM_014996	ENSG00000114805	PLCH1	PLCL3	phospholipase C eta 1	protein-coding
6179	chrUn_gl000216	58890	58894	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
4313	chr4	130316515	130316756	+	0	NA	Intergenic	Intergenic	299353	NM_001099783	132321	Hs.567679	NM_173487	ENSG00000151470	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
361	chr1	180556145	180556260	+	0	NA	Intergenic	AluJb|SINE|Alu	28092	NR_125716	148756		NR_125716	ENSG00000236719	OVAAL	LINC01131|OVAL	ovarian adenocarcinoma amplified long non-coding RNA	ncRNA
202	chr1	86874886	86875089	+	0	NA	Intergenic	AluJb|SINE|Alu	-12962	NM_001184765	57489	Hs.149360	NM_020729	ENSG00000122417	ODF2L	dJ977L11.1	outer dense fiber of sperm tails 2 like	protein-coding
4436	chr5	34900494	34900870	+	0	NA	TTS (NM_001317949)	TTS (NM_001317949)	15049	NR_026591	5810	Hs.38114	NM_002853	ENSG00000113456	RAD1	HRAD1|REC1	RAD1 checkpoint DNA exonuclease	protein-coding
2468	chr17	36571901	36572143	+	0	NA	Intergenic	Intergenic	-12698	NM_001199417	57636	Hs.374446	NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
3282	chr2	159830529	159830688	+	0	NA	intron (NM_033394, intron 1 of 26)	intron (NM_033394, intron 1 of 26)	5462	NM_033394	85461	Hs.61590	NM_033394	ENSG00000115183	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
4801	chr6	46348022	46348250	+	0	NA	intron (NM_001251973, intron 2 of 4)	MER46C|DNA|TcMar-Tigger	-54507	NM_005822	10231	Hs.440168	NM_005822	ENSG00000172348	RCAN2	CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4	regulator of calcineurin 2	protein-coding
1819	chr14	70478068	70478167	+	0	NA	intron (NM_001034852, intron 8 of 11)	intron (NM_001034852, intron 8 of 11)	68817	NM_182936	6547	Hs.337696	NM_033262	ENSG00000100678	SLC8A3	NCX3	solute carrier family 8 member A3	protein-coding
2183	chr16	16653449	16653562	+	0	NA	Intergenic	Intergenic	180403	NM_001282507	101059938	Hs.634612	NM_001282507	ENSG00000214967	NPIPA7	-	nuclear pore complex interacting protein family member A7	protein-coding
1459	chr13	37121817	37122157	+	0	NA	Intergenic	Intergenic	115578	NM_003914	8900	Hs.417050	NM_003914	ENSG00000133101	CCNA1	CT146	cyclin A1	protein-coding
5761	chr8	109055169	109055263	+	0	NA	intron (NM_178565, intron 2 of 5)	MIRb|SINE|MIR	38951	NM_001317942	340419	Hs.444834	NM_178565	ENSG00000147655	RSPO2	CRISTIN2	R-spondin 2	protein-coding
5279	chr7	64954805	64954877	+	0	NA	Intergenic	AluSz6|SINE|Alu	116129	NM_007139	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
1984	chr15	27516493	27516623	+	0	NA	intron (NM_033223, intron 3 of 9)	intron (NM_033223, intron 3 of 9)	-110092	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	GABRG3-AS1	-	GABRG3 antisense RNA 1	ncRNA
6292	chrX	61684194	61684556	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	886843	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
5558	chr8	21091555	21091880	+	0	NA	Intergenic	Intergenic	-64033	NR_104677	101929172	Hs.128668	NR_104677	ENSG00000254334	LOC101929172	-	uncharacterized LOC101929172	ncRNA
307	chr1	149033916	149034133	+	0	NA	intron (NR_104217, intron 2 of 17).2	HSATII|Satellite|Satellite	75701	NR_104217	101929780	Hs.534675	NR_104217	ENSG00000272150	NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family member 25, pseudogene	pseudo
3472	chr20	11331856	11331988	+	0	NA	Intergenic	Intergenic	-77891	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
6153	chrUn_gl000216	18257	18668	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5908	chr9	66835362	66835586	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-87493	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
6229	chrUn_gl000225	130366	130832	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
5836	chr9	3732572	3732684	+	0	NA	Intergenic	Intergenic	64542	NR_121586	101929302	Hs.122828	NR_121586	ENSG00000232104	RFX3-AS1	CVAT7	RFX3 antisense RNA 1	ncRNA
154	chr1	61477050	61477271	+	0	NA	Intergenic	Intergenic	-40712	NR_110618	100996570	Hs.46616	NR_110617	ENSG00000237928	NFIA-AS2	-	NFIA antisense RNA 2	ncRNA
1463	chr13	39164959	39165173	+	0	NA	intron (NR_126377, intron 2 of 2)	intron (NR_126377, intron 2 of 2)	23205	NR_046999	100874147	Hs.555371	NR_046999		LINC00366	-	long intergenic non-protein coding RNA 366	ncRNA
1467	chr13	40113393	40113865	+	0	NA	intron (NM_005780, intron 2 of 3)	intron (NM_005780, intron 2 of 3)	63727	NM_005780	10186	Hs.507798	NM_005780	ENSG00000183722	LHFP	-	lipoma HMGIC fusion partner	protein-coding
2041	chr15	58756362	58756628	+	0	NA	intron (NR_120338, intron 2 of 2)	intron (NR_120338, intron 2 of 2)	32320	NM_000236	3990	Hs.654472	NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
4548	chr5	131764042	131764247	+	0	NA	intron (NR_045116, intron 2 of 3)	L2a|LINE|L2	17679	NR_045116	441108	Hs.658288	NM_001013717	ENSG00000197536	C5orf56	-	chromosome 5 open reading frame 56	ncRNA
5320	chr7	76340900	76341037	+	0	NA	Intergenic	Intergenic	-84348	NM_012230	22932	Hs.488877	NM_012230	ENSG00000146707	POMZP3	POM-ZP3|POM121	POM121 and ZP3 fusion	protein-coding
4324	chr4	140796468	140797067	+	0	NA	intron (NM_018717, intron 3 of 5)	intron (NM_018717, intron 3 of 5)	209845	NM_002413	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
5699	chr8	91336240	91336507	+	0	NA	intron (NR_051989, intron 2 of 3)	intron (NR_051989, intron 2 of 3)	102657	NR_051989	100874052	Hs.571514	NR_051989	ENSG00000253394	LINC00534	-	long intergenic non-protein coding RNA 534	ncRNA
5405	chr7	114870713	114870956	+	0	NA	intron (NR_126407, intron 1 of 4)	intron (NR_126407, intron 1 of 4)	575	NR_126407	104355291		NR_126407	ENSG00000233607	LINC01392	-	long intergenic non-protein coding RNA 1392	ncRNA
704	chr10	80319890	80320143	+	0	NA	Intergenic	Intergenic	292931	NR_073447	414243	Hs.55047	NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
2801	chr18	75899516	75899540	+	0	NA	Intergenic	Intergenic	-193845	NR_104127	101927715	Hs.385670	NR_104127		LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
1462	chr13	37478719	37478946	+	0	NA	intron (NM_005905, intron 1 of 5)	L2c|LINE|L2	15577	NM_001127217	4093	Hs.123119	NM_005905	ENSG00000120693	SMAD9	MADH6|MADH9|PPH2|SMAD8|SMAD8/9|SMAD8A|SMAD8B	SMAD family member 9	protein-coding
681	chr10	76707780	76707833	+	0	NA	intron (NM_012330, intron 3 of 17)	intron (NM_012330, intron 3 of 17)	35262	NR_134476	101929165	Hs.670533	NR_134476		LOC101929165	-	uncharacterized LOC101929165	ncRNA
4752	chr6	24584893	24584928	+	0	NA	intron (NM_014809, intron 4 of 20)	MIR3|SINE|MIR	-1455	NM_001252328	9856	Hs.26441	NM_014809	ENSG00000137261	KIAA0319	DYLX2|DYX2|NMIG	KIAA0319	protein-coding
4478	chr5	72500848	72500860	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-3066	NR_134291	340090	Hs.434311	NR_134291		LOC340090	-	uncharacterized LOC340090	ncRNA
1029	chr11	117344385	117344636	+	0	NA	intron (NM_020693, intron 14 of 32)	intron (NM_020693, intron 14 of 32)	145939	NM_014956	22897	Hs.504009	NM_014956	ENSG00000110274	CEP164	NPHP15	centrosomal protein 164	protein-coding
3062	chr2	68073450	68073517	+	0	NA	Intergenic	Intergenic	-20789	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
5	chr1	724922	724984	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-10885	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
2715	chr18	45859995	45860173	+	0	NA	intron (NM_001318841, intron 2 of 4)	intron (NM_001318841, intron 2 of 4)	75709	NM_001318841	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
2105	chr15	75339424	75339718	+	0	NA	intron (NM_001301105, intron 3 of 4)	intron (NM_001301105, intron 3 of 4)	3961	NM_001301105	60490	Hs.458922	NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
2694	chr18	42995374	42996224	+	0	NA	intron (NM_001242692, intron 1 of 20)	intron (NM_001242692, intron 1 of 20)	91202	NR_110899	101927980	Hs.591058	NR_110899		SLC14A2-AS1	-	SLC14A2 antisense RNA 1	ncRNA
3292	chr2	161522631	161522755	+	0	NA	Intergenic	Intergenic	-172375	NM_002897	5937	Hs.470412	NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
3455	chr20	4856393	4856459	+	0	NA	intron (NM_203327, intron 9 of 16)	intron (NM_203327, intron 9 of 16)	-52135	NM_014737	9770	Hs.631504	NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
554	chr10	38804218	38804243	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	87156	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
1957	chr14	97355167	97355487	+	0	NA	Intergenic	Intergenic	-54589	NR_104113	145249		NR_104113	ENSG00000225163	LINC00618	C14orf63	long intergenic non-protein coding RNA 618	ncRNA
5894	chr9	66823370	66823372	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-99596	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
552	chr10	38785693	38785807	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	68676	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
2657	chr18	35095243	35095278	+	0	NA	intron (NM_001025087, intron 1 of 12)	intron (NM_001025087, intron 1 of 12)	-48793	NR_132967	106635546		NR_132967		SNORA111	-	small nucleolar RNA, H/ACA box 111	snoRNA
4006	chr3	171942060	171942335	+	0	NA	intron (NM_001135095, intron 3 of 25)	intron (NM_001135095, intron 3 of 25)	183853	NM_001135095	64778	Hs.744888	NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
3766	chr22	23534357	23534622	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	11937	NM_004327	613	Hs.517461	NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR, RhoGEF and GTPase activating protein	protein-coding
1623	chr13	113870991	113871000	+	0	NA	intron (NM_001008895, intron 2 of 19)	intron (NM_001008895, intron 2 of 19)	7176	NM_001008895	8451	Hs.339735	NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
74	chr1	35055592	35056084	+	0	NA	Intergenic	Intergenic	79457	NR_030278	693137		NR_030278	ENSG00000207941	MIR552	MIRN552|hsa-mir-552	microRNA 552	ncRNA
890	chr11	51583878	51584049	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	68681	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
5676	chr8	81639671	81639774	+	0	NA	intron (NM_001033723, intron 2 of 8)	intron (NM_001033723, intron 2 of 8)	147294	NM_001033723	619279	Hs.434957	NM_032651	ENSG00000164684	ZNF704	Gig1	zinc finger protein 704	protein-coding
3699	chr21	38432868	38433162	+	0	NA	Intergenic	Intergenic	3351	NR_131189	105372795	Hs.528019	NR_131189		LOC105372795	-	uncharacterized LOC105372795	ncRNA
1926	chr14	90167385	90167627	+	0	NA	Intergenic	Intergenic	-82012	NM_001085471	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
299	chr1	142967382	142967487	+	0	NA	Intergenic	(CACTC)n|Simple_repeat|Simple_repeat	234805	NR_110761	102723769	Hs.652926	NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
2024	chr15	53950737	53951048	+	0	NA	intron (NR_102334, intron 14 of 19)	intron (NR_102334, intron 14 of 19)	100967	NM_182758	256764	Hs.122125	NM_182758	ENSG00000166415	WDR72	AI2A3	WD repeat domain 72	protein-coding
5952	chr9	72653577	72653615	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	-4901	NM_001347990	256691	Hs.547172	NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding
1282	chr12	101961741	101961816	+	0	NA	Intergenic	Intergenic	-26931	NM_001254721	4604	Hs.654589	NM_002465	ENSG00000196091	MYBPC1	LCCS4|MYBPCC|MYBPCS	myosin binding protein C, slow type	protein-coding
5144	chr7	14429572	14429768	+	0	NA	intron (NM_145695, intron 20 of 23)	intron (NM_145695, intron 20 of 23)	-398620	NM_001163148	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding
1694	chr14	37326791	37326902	+	0	NA	intron (NM_030631, intron 2 of 9)	intron (NM_030631, intron 2 of 9)	94750	NR_039725	100616280		NR_039725	ENSG00000266327	MIR4503	-	microRNA 4503	ncRNA
6266	chrX	20380844	20381313	+	0	NA	Intergenic	Intergenic	-96328	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
1350	chr12	116322841	116323458	+	0	NA	Intergenic	Intergenic	263310	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
1240	chr12	92759873	92760012	+	0	NA	Intergenic	Intergenic	-55365	NR_027932	574028	Hs.730377	NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	protein-coding
3183	chr2	92300474	92301314	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	171735	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
2815	chr19	7179452	7179620	+	0	NA	intron (NM_001079817, intron 3 of 20)	MIR|SINE|MIR	110065	NM_001044388	79230	Hs.591380	NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
3079	chr2	69444909	69445018	+	0	NA	intron (NM_032208, intron 17 of 17)	intron (NM_032208, intron 17 of 17)	114149	NR_036073	100423030		NR_036073	ENSG00000266649	MIR3126	mir-3126	microRNA 3126	ncRNA
481	chr1	224201246	224201660	+	0	NA	intron (NR_136593, intron 2 of 4)	(GAATG)n|Satellite|Satellite	21021	NR_136593	100287497	Hs.568390	NR_136590		LOC100287497	-	septin 7 pseudogene	pseudo
867	chr11	51571888	51571952	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	56638	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
3355	chr2	210291069	210291189	+	0	NA	intron (NM_001039538, intron 1 of 14)	intron (NM_001039538, intron 1 of 14)	2358	NM_001039538	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding
1976	chr14	101213479	101213677	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	20376	NM_001317172	8788	Hs.116631	NM_003836	ENSG00000185559	DLK1	DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2	delta like non-canonical Notch ligand 1	protein-coding
3669	chr21	35173976	35174171	+	0	NA	intron (NM_001331012, intron 19 of 28)	intron (NM_001331012, intron 19 of 28)	114085	NM_001697	539	Hs.409140	NM_001697	ENSG00000241837	ATP5O	ATPO|HMC08D05|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding
3442	chr2	236888584	236888943	+	0	NA	intron (NM_001037131, intron 13 of 17)	intron (NM_001037131, intron 13 of 17)	187889	NM_001485	2637	Hs.184945	NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
817	chr11	20719994	20720040	+	0	NA	intron (NM_201551, intron 2 of 18)	intron (NM_201551, intron 2 of 18)	28920	NM_001288714	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding
2751	chr18	55524128	55524157	+	0	NA	Intergenic	Intergenic	-53815	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
3470	chr20	10314045	10314389	+	0	NA	Intergenic	Intergenic	98356	NM_018848	8195	Hs.472119	NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	McKusick-Kaufman syndrome	protein-coding
229	chr1	106606142	106606601	+	0	NA	Intergenic	Intergenic	-444814	NR_125955	101928476	Hs.563856	NR_125954	ENSG00000230768	LINC01676	-	long intergenic non-protein coding RNA 1676	ncRNA
4719	chr6	21748855	21749097	+	0	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	82301	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
673	chr10	70631899	70632095	+	0	NA	intron (NM_001130161, intron 1 of 4)	intron (NM_001130161, intron 1 of 4)	-29037	NM_024045	79009	Hs.522984	NM_024045	ENSG00000107625	DDX50	GU2|GUB|RH-II/GuB|mcdrh	DExD-box helicase 50	protein-coding
3322	chr2	177392139	177392363	+	0	NA	Intergenic	Intergenic	73529	NR_031648	100302142		NR_031648	ENSG00000283203	MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
4204	chr4	49645435	49645443	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	656780	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
2059	chr15	61931676	61931866	+	0	NA	Intergenic	Intergenic	-410269	NM_134261	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
315	chr1	149035197	149035516	+	0	NA	intron (NR_104217, intron 2 of 17).2	HSATII|Satellite|Satellite	74369	NR_104217	101929780	Hs.534675	NR_104217	ENSG00000272150	NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family member 25, pseudogene	pseudo
4842	chr6	58780164	58780168	+	0	NA	Intergenic	Intergenic	-492442	NR_132996	106660612	Hs.561539	NR_125727	ENSG00000215190	LINC00680	-	long intergenic non-protein coding RNA 680	ncRNA
1827	chr14	71176735	71177090	+	0	NA	intron (NR_125769, intron 3 of 3)	intron (NR_125769, intron 3 of 3)	11497	NR_125769	103695436	Hs.572296	NR_125769	ENSG00000258689	LINC01269	-	long intergenic non-protein coding RNA 1269	ncRNA
1947	chr14	96337732	96337732	+	0	NA	Intergenic	L3|LINE|CR1	-4997	NR_132399	100507043	Hs.455955	NR_038861	ENSG00000250366	TUNAR	HI-LNC78|LINC00617|TUNA	TCL1 upstream neural differentiation-associated RNA	ncRNA
2366	chr16	77484431	77484499	+	0	NA	Intergenic	Intergenic	-15454	NM_199355	170692	Hs.188746	NM_139054	ENSG00000140873	ADAMTS18	ADAMTS21|KNO2|MMCAT	ADAM metallopeptidase with thrombospondin type 1 motif 18	protein-coding
2501	chr17	57046507	57047021	+	0	NA	intron (NM_014906, intron 3 of 6)	intron (NM_014906, intron 3 of 6)	137518	NM_001320988	4591	Hs.579079	NM_015294	ENSG00000108395	TRIM37	MUL|POB1|TEF3	tripartite motif containing 37	protein-coding
1347	chr12	116135105	116135581	+	0	NA	Intergenic	Intergenic	451116	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
25	chr1	8499195	8499329	+	0	NA	intron (NM_012102, intron 12 of 23)	intron (NM_012102, intron 12 of 23)	14557	NR_125999	102724552	Hs.568612	NR_125999		LOC102724552	-	uncharacterized LOC102724552	ncRNA
1504	chr13	79317044	79317401	+	0	NA	Intergenic	Intergenic	-83908	NM_024546	79596	Hs.567576	NM_024546	ENSG00000152193	RNF219	C13orf7	ring finger protein 219	protein-coding
3350	chr2	206637757	206637891	+	0	NA	intron (NM_201266, intron 15 of 16)	intron (NM_201266, intron 15 of 16)	90600	NM_201264	8828	Hs.471200	NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
3971	chr3	132836263	132836448	+	0	NA	intron (NM_001136469, intron 2 of 5)	intron (NM_001136469, intron 2 of 5)	-7310	NM_001282865	66000	Hs.191616	NM_023943	ENSG00000144868	TMEM108	CT124	transmembrane protein 108	protein-coding
2270	chr16	35239738	35239761	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	258826	NR_033985	400533	Hs.499135	NR_033985	ENSG00000261122	FLJ26245	-	uncharacterized LOC400533	ncRNA
1253	chr12	97396314	97396646	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	95236	NM_001135175	121441	Hs.270084	NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
4852	chr6	61911599	61911909	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-372254	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
6460	chrY	13864455	13864645	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	668839	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5469	chr7	133214539	133214886	+	0	NA	intron (NM_021807, intron 9 of 17)	MIR|SINE|MIR	239077	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
5941	chr9	71423889	71423922	+	0	NA	intron (NM_003558, intron 2 of 15)	intron (NM_003558, intron 2 of 15)	28983	NM_138333	116224	Hs.655572	NM_138333	ENSG00000187866	FAM122A	C9orf42	family with sequence similarity 122A	protein-coding
5829	chr9	935521	935952	+	0	NA	intron (NM_021951, intron 4 of 4)	intron (NM_021951, intron 4 of 4)	-41232	NM_021240	58524	Hs.189174	NM_021240	ENSG00000064218	DMRT3	DMRTA3	doublesex and mab-3 related transcription factor 3	protein-coding
2648	chr18	33656033	33656643	+	0	NA	Intergenic	Intergenic	-8781	NM_001303413	55197	Hs.464912	NM_018170	ENSG00000141425	RPRD1A	HsT3101|P15RS	regulation of nuclear pre-mRNA domain containing 1A	protein-coding
3932	chr3	123670843	123670861	+	0	NA	intron (NM_022757, intron 4 of 11)	intron (NM_022757, intron 4 of 11)	9403	NM_022757	64770	Hs.645028	NM_022757	ENSG00000175455	CCDC14	-	coiled-coil domain containing 14	protein-coding
5877	chr9	14165678	14166082	+	0	NA	intron (NM_001190737, intron 3 of 10)	L1MB2|LINE|L1	14921	NM_001282787	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
1730	chr14	54810625	54810734	+	0	NA	Intergenic	Intergenic	-52907	NM_001330173	1033	Hs.84113	NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
5314	chr7	69346371	69346463	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	282512	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
3784	chr22	29330371	29330517	+	0	NA	intron (NM_032173, intron 1 of 8)	intron (NM_032173, intron 1 of 8)	17067	NM_032173	84133	Hs.604200	NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
4479	chr5	72500900	72501113	+	0	NA	Intergenic	Intergenic	-3218	NR_134291	340090	Hs.434311	NR_134291		LOC340090	-	uncharacterized LOC340090	ncRNA
46	chr1	16840348	16840881	+	0	NA	Intergenic	Intergenic	-21418	NR_023386	114819	Hs.597881	NR_023386	ENSG00000080947	CROCCP3	CROCCL2|dJ798A10.2	ciliary rootlet coiled-coil, rootletin pseudogene 3	pseudo
3623	chr21	10819193	10819349	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	171672	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
1316	chr12	106207906	106208162	+	0	NA	Intergenic	Intergenic	107482	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
1851	chr14	77507048	77507320	+	0	NA	promoter-TSS (NR_110554)	promoter-TSS (NR_110554)	-208	NR_110554	283575	Hs.651736	NR_110554	ENSG00000246548	LOC283575	-	uncharacterized LOC283575	ncRNA
4542	chr5	125456948	125457083	+	0	NA	Intergenic	Intergenic	-58255	NR_105042	102546228	Hs.582529	NR_105042	ENSG00000248107	LINC02039	-	long intergenic non-protein coding RNA 2039	ncRNA
5535	chr8	5835393	5835407	+	0	NA	Intergenic	Intergenic	428669	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	ncRNA
3327	chr2	179088600	179088856	+	0	NA	intron (NM_001201481, intron 1 of 23)	intron (NM_001201481, intron 1 of 23)	29520	NM_032523	114880	Hs.318775	NM_032523	ENSG00000079156	OSBPL6	ORP6	oxysterol binding protein like 6	protein-coding
2630	chr18	31697142	31697153	+	0	NA	intron (NM_001198546, intron 2 of 9)	MIR|SINE|MIR	-68571	NM_001198549	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
2373	chr16	78585579	78585952	+	0	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	452455	NM_001291997	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
2263	chr16	34022373	34022394	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-59880	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
3386	chr2	221175364	221175477	+	0	NA	Intergenic	Intergenic	-404134	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	ncRNA
6259	chrX	17810968	17811384	+	0	NA	Intergenic	Intergenic	55607	NM_001037536	6322	Hs.109655	NM_006746	ENSG00000047634	SCML1	-	sex comb on midleg-like 1 (Drosophila)	protein-coding
4163	chr4	49139450	49139462	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	150797	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
5659	chr8	73522094	73522354	+	0	NA	intron (NM_004770, intron 2 of 2)	intron (NM_004770, intron 2 of 2)	72598	NM_004770	9312	Hs.661102	NM_004770	ENSG00000182674	KCNB2	KV2.2	potassium voltage-gated channel subfamily B member 2	protein-coding
5302	chr7	69120184	69120291	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	56332	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
3505	chr20	20222928	20223190	+	0	NA	intron (NM_015585, intron 18 of 26)	intron (NM_015585, intron 18 of 26)	-125706	NM_002196	3642	Hs.89584	NM_002196	ENSG00000173404	INSM1	IA-1|IA1	INSM transcriptional repressor 1	protein-coding
317	chr1	149035550	149035572	+	0	NA	intron (NR_104217, intron 2 of 17).2	HSATII|Satellite|Satellite	74164	NR_104217	101929780	Hs.534675	NR_104217	ENSG00000272150	NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family member 25, pseudogene	pseudo
5813	chr8	140966916	140967248	+	0	NA	intron (NM_031466, intron 19 of 22)	intron (NM_031466, intron 19 of 22)	143552	NR_144431	359809	Hs.26814	NR_144431		PEG13	-	paternally expressed 13	ncRNA
1254	chr12	97396647	97396908	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	95533	NM_001135175	121441	Hs.270084	NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
4555	chr5	133162762	133162930	+	0	NA	Intergenic	Intergenic	-86522	NR_131252	105664404	Hs.582536	NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
1642	chr14	27289755	27289759	+	0	NA	non-coding (NR_110556, exon 5 of 5)	non-coding (NR_110556, exon 5 of 5)	1569	NR_110033	101927062		NR_110033	ENSG00000257845	LOC101927062	-	uncharacterized LOC101927062	ncRNA
3712	chr21	40357989	40358265	+	0	NA	Intergenic	Intergenic	-8427	NR_109962	101928435	Hs.385528	NR_109962	ENSG00000232837	LINC01700	-	long intergenic non-protein coding RNA 1700	ncRNA
4622	chr5	175610767	175610860	+	0	NA	intron (NR_036494, intron 4 of 25)	intron (NR_036494, intron 4 of 25)	15485	NR_036494	643201	Hs.390285	NR_036494	ENSG00000248596	LOC643201	-	centrosomal protein 192kDa pseudogene	pseudo
892	chr11	51585205	51585350	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	69995	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
3954	chr3	127730123	127730335	+	0	NA	Intergenic	Intergenic	-40983	NM_013336	29927	Hs.518236	NM_013336	ENSG00000058262	SEC61A1	HNFJ4|HSEC61|SEC61|SEC61A	Sec61 translocon alpha 1 subunit	protein-coding
6363	chrY	13453537	13453570	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1079836	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
546	chr10	38777962	38778044	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	60929	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
2071	chr15	69760800	69761173	+	0	NA	Intergenic	Intergenic	15827	NM_001003	6176	Hs.356502	NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
537	chr10	29265319	29265481	+	0	NA	Intergenic	Intergenic	130063	NM_001278522	283080		NM_001278522		C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
5816	chr8	141223760	141224121	+	0	NA	intron (NM_031466, intron 17 of 22)	intron (NM_031466, intron 17 of 22)	-113306	NR_144431	359809	Hs.26814	NR_144431		PEG13	-	paternally expressed 13	ncRNA
1007	chr11	114030582	114030741	+	0	NA	intron (NM_001018011, intron 3 of 6)	intron (NM_001018011, intron 3 of 6)	99373	NM_001018011	7704	Hs.591945	NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
3896	chr3	105370105	105370796	+	0	NA	Intergenic	Intergenic	215985	NM_001321813	868	Hs.430589	NM_170662	ENSG00000114423	CBLB	Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
4072	chr3	194915513	194915738	+	0	NA	intron (NM_152531, intron 2 of 3)	L1ME1|LINE|L1	47025	NR_102711	101410543	Hs.658170	NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
1443	chr13	31621094	31621246	+	0	NA	Intergenic	Intergenic	114336	NM_152325	122046	Hs.124463	NM_152325	ENSG00000175664	TEX26	C13orf26	testis expressed 26	protein-coding
6141	chrUn_gl000216	11121	11139	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
4441	chr5	38540558	38540693	+	0	NA	intron (NM_002310, intron 1 of 19)	intron (NM_002310, intron 1 of 19)	16123	NM_001127671	3977	Hs.133421	NM_002310	ENSG00000113594	LIFR	CD118|LIF-R|SJS2|STWS|SWS	leukemia inhibitory factor receptor alpha	protein-coding
1833	chr14	74607402	74607782	+	0	NA	intron (NM_001024674, intron 5 of 5)	intron (NM_001024674, intron 5 of 5)	55936	NM_001024674	91750	Hs.612866	NM_001024674	ENSG00000205659	LIN52	C14orf46|c14_5549	lin-52 DREAM MuvB core complex component	protein-coding
3298	chr2	166681588	166681783	+	0	NA	Intergenic	HAL1|LINE|L1	-30882	NM_004482	2591	Hs.170986	NM_004482	ENSG00000115339	GALNT3	GalNAc-T3|HFTC|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
1186	chr12	42377535	42377750	+	0	NA	Intergenic	Intergenic	161031	NM_001099650	283464	Hs.259347	NM_173601	ENSG00000151233	GXYLT1	GLT8D3	glucoside xylosyltransferase 1	protein-coding
3119	chr2	89867941	89867958	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	756065	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
4874	chr6	71548714	71548860	+	0	NA	intron (NM_001281440, intron 7 of 10)	intron (NM_001281440, intron 7 of 10)	118001	NM_080742	135152	Hs.713609	NM_080742	ENSG00000112309	B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding
2240	chr16	33898672	33899505	+	0	NA	Intergenic	(CATTC)n|Simple_repeat|Simple_repeat	63415	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
3566	chr20	42646992	42647063	+	0	NA	intron (NM_001098798, intron 3 of 7)	intron (NM_001098798, intron 3 of 7)	72491	NM_001098798	84969	Hs.26608	NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
5241	chr7	61743043	61743129	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1021348	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
529	chr10	23201446	23201602	+	0	NA	Intergenic	Intergenic	-15429	NM_001282746	219681	Hs.659807	NM_173081	ENSG00000165309	ARMC3	CT81|KU-CT-1	armadillo repeat containing 3	protein-coding
3556	chr20	30161924	30162722	+	0	NA	Intergenic	AluJr4|SINE|Alu	-1257	NR_046853	100874042	Hs.373741	NR_046853	ENSG00000230613	HM13-AS1	-	HM13 antisense RNA 1	ncRNA
4309	chr4	129768328	129768491	+	0	NA	intron (NM_001287437, intron 4 of 10)	intron (NM_001287437, intron 4 of 10)	35410	NM_001287443	79960	Hs.12420	NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
4222	chr4	56624454	56624660	+	0	NA	Intergenic	Intergenic	-61680	NR_003935	644145	Hs.570825	NR_003935		LOC644145	-	exocyst complex component 1 pseudogene	pseudo
2573	chr18	3726854	3726967	+	0	NA	intron (NM_001308390, intron 4 of 10)	intron (NM_001308390, intron 4 of 10)	118448	NM_001242766	9229	Hs.594640	NM_004746	ENSG00000170579	DLGAP1	DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1	DLG associated protein 1	protein-coding
987	chr11	111180865	111181060	+	0	NA	Intergenic	Intergenic	-5189	NM_001302644	399948	Hs.729225	NM_207429		COLCA1	C11orf92|CASC12|LOH11CR1F	colorectal cancer associated 1	protein-coding
2984	chr2	39923633	39923751	+	0	NA	intron (NM_152390, intron 1 of 3)	MIRb|SINE|MIR	30657	NM_152390	130733	Hs.40808	NM_152390	ENSG00000152154	TMEM178A	TMEM178	transmembrane protein 178A	protein-coding
1150	chr12	34834181	34834396	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	659072	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
5635	chr8	61532882	61532975	+	0	NA	intron (NM_001242644, intron 6 of 6)	intron (NM_001242644, intron 6 of 6)	-58396	NM_017780	55636	Hs.20395	NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
3988	chr3	158998480	158998616	+	0	NA	intron (NM_001197108, intron 1 of 6)	intron (NM_001197108, intron 1 of 6)	-1887	NR_037483	100500803		NR_037483	ENSG00000263634	MIR3919	-	microRNA 3919	ncRNA
6167	chrUn_gl000216	30870	30946	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
4122	chr4	40336086	40336268	+	0	NA	Intergenic	Intergenic	-1169	NM_017581	55584	Hs.272278	NM_017581	ENSG00000174343	CHRNA9	HSA243342|NACHRA9	cholinergic receptor nicotinic alpha 9 subunit	protein-coding
4347	chr4	154064243	154064420	+	0	NA	Intergenic	Intergenic	-9939	NM_001130067	23321	Hs.435711	NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
4314	chr4	138980343	138980350	+	0	NA	intron (NR_037866, intron 7 of 10)	L1PA15|LINE|L1	-29822	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	ncRNA
4239	chr4	74534487	74534674	+	0	NA	Intergenic	HERVK13-int|LTR|ERVK	-48232	NM_001270392	166824	Hs.529677	NM_177532	ENSG00000169435	RASSF6	-	Ras association domain family member 6	protein-coding
5959	chr9	81586770	81587149	+	0	NA	Intergenic	Intergenic	173622	NR_109771	101927450	Hs.738041	NR_109771	ENSG00000260995	LOC101927450	-	uncharacterized LOC101927450	ncRNA
2390	chr16	84172695	84172707	+	0	NA	intron (NM_031463, intron 1 of 5)	intron (NM_031463, intron 1 of 5)	6099	NM_031463	83693	Hs.555992	NM_031463	ENSG00000103160	HSDL1	SDR12C3	hydroxysteroid dehydrogenase like 1	protein-coding
908	chr11	51592206	51592273	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	76957	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
2580	chr18	13394750	13395005	+	0	NA	intron (NM_181481, intron 2 of 5)	intron (NM_181481, intron 2 of 5)	32656	NR_040031	100288122	Hs.646264	NR_040031	ENSG00000267690	LDLRAD4-AS1	-	LDLRAD4 antisense RNA 1	ncRNA
4900	chr6	83235696	83235957	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	161865	NM_001166392	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
4151	chr4	49131962	49132259	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	143451	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
284	chr1	121478371	121478404	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	217477	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
3127	chr2	89874066	89874163	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	762230	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
5125	chr7	8215758	8216417	+	0	NA	intron (NM_004968, intron 6 of 13)	intron (NM_004968, intron 6 of 13)	85595	NM_022307	3382	Hs.487561	NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
247	chr1	112435223	112435344	+	0	NA	intron (NM_004980, intron 2 of 7)	L2a|LINE|L2	-16996	NR_046619	100873995	Hs.535274	NR_046619	ENSG00000237556	KCND3-AS1	-	KCND3 antisense RNA 1	ncRNA
903	chr11	51590043	51590180	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	74829	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
1340	chr12	114427108	114427168	+	0	NA	Intergenic	Intergenic	-22962	NM_001146699	9904	Hs.7482	NM_016196	ENSG00000122965	RBM19	-	RNA binding motif protein 19	protein-coding
3870	chr3	93801647	93801671	+	0	NA	intron (NM_022072, intron 2 of 5)	intron (NM_022072, intron 2 of 5)	-19592	NM_001195643	200895	Hs.718516	NM_176815	ENSG00000178700	DHFR2	DHFRL1|DHFRP4	dihydrofolate reductase 2	protein-coding
5397	chr7	111802144	111802487	+	0	NA	intron (NM_014705, intron 1 of 51)	intron (NM_014705, intron 1 of 51)	44147	NM_014705	9732	Hs.654652	NM_014705	ENSG00000128512	DOCK4	-	dedicator of cytokinesis 4	protein-coding
4389	chr5	1604685	1604788	+	0	NA	intron (NR_003713, intron 2 of 3)	intron (NR_003713, intron 2 of 3)	-10090	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	succinate dehydrogenase complex flavoprotein subunit A pseudogene 3	pseudo
3927	chr3	123152601	123152786	+	0	NA	intron (NM_183357, intron 1 of 20)	intron (NM_183357, intron 1 of 20)	14699	NM_183357	111	Hs.593292	NM_183357	ENSG00000173175	ADCY5	AC5|FDFM	adenylate cyclase 5	protein-coding
5504	chr7	146352949	146353266	+	0	NA	intron (NM_014141, intron 1 of 23)	intron (NM_014141, intron 1 of 23)	441594	NR_110829	101928700	Hs.571218	NR_110829	ENSG00000236795	LOC101928700	-	uncharacterized LOC101928700	ncRNA
289	chr1	142536092	142537145	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	176987	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	ankyrin repeat domain 20 family member A12, pseudogene	pseudo
4739	chr6	24212636	24212819	+	0	NA	intron (NM_016356, intron 7 of 9)	intron (NM_016356, intron 7 of 9)	86313	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
4411	chr5	7209499	7209801	+	0	NA	Intergenic	Intergenic	59817	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
2119	chr15	92079868	92079976	+	0	NA	Intergenic	Intergenic	73353	NR_110106	101926928	Hs.638788	NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
3891	chr3	105176946	105177068	+	0	NA	intron (NM_001243280, intron 1 of 14)	L4|LINE|RTE	91450	NM_001243280	214	Hs.591293	NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
808	chr11	20509342	20509956	+	0	NA	intron (NM_005788, intron 13 of 15)	intron (NM_005788, intron 13 of 15)	100573	NM_005788	10196	Hs.152337	NM_005788	ENSG00000185238	PRMT3	HRMT1L3	protein arginine methyltransferase 3	protein-coding
845	chr11	33655160	33655521	+	0	NA	intron (NM_012194, intron 15 of 19)	intron (NM_012194, intron 15 of 19)	66946	NM_001166692	100131378	Hs.709466	NM_001166692	ENSG00000205177	C11orf91	-	chromosome 11 open reading frame 91	protein-coding
5997	chr9	93331176	93331322	+	0	NA	intron (NR_034157, intron 1 of 5)	MLT1J1-int|LTR|ERVL-MaLR	13779	NR_034157	340515	Hs.522284	NM_001105317		LINC01501	-	long intergenic non-protein coding RNA 1501	ncRNA
1847	chr14	77506400	77506446	+	0	NA	promoter-TSS (NR_110554)	promoter-TSS (NR_110554)	-969	NR_110554	283575	Hs.651736	NR_110554	ENSG00000246548	LOC283575	-	uncharacterized LOC283575	ncRNA
147	chr1	59543653	59544091	+	0	NA	intron (NR_110626, intron 2 of 2)	intron (NR_110626, intron 2 of 2)	57724	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
1249	chr12	96068292	96068345	+	0	NA	TTS (NR_077225)	TTS (NR_077225)	25287	NR_077225	100132594	Hs.676211	NR_077225	ENSG00000257150	PGAM1P5	-	phosphoglycerate mutase 1 pseudogene 5	pseudo
5211	chr7	55195228	55195615	+	0	NA	intron (NM_001346900, intron 1 of 27)	intron (NM_001346900, intron 1 of 27)	17911	NM_001346900	1956	Hs.488293	NM_005228	ENSG00000146648	EGFR	ERBB|ERBB1|HER1|NISBD2|PIG61|mENA	epidermal growth factor receptor	protein-coding
1142	chr12	32229976	32230179	+	0	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-30108	NM_001003398	636	Hs.505202	NM_001714	ENSG00000151746	BICD1	BICD	BICD cargo adaptor 1	protein-coding
4952	chr6	97052265	97052398	+	0	NA	intron (NM_001170807, intron 2 of 5)	intron (NM_001170807, intron 2 of 5)	41330	NM_001322467	9457	Hs.632608	NM_020482	ENSG00000112214	FHL5	1700027G07Rik|ACT|FHL-5|dJ393D12.2	four and a half LIM domains 5	protein-coding
5267	chr7	61980346	61980606	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	783958	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
4708	chr6	21201570	21201669	+	0	NA	intron (NM_017774, intron 15 of 15)	intron (NM_017774, intron 15 of 15)	310504	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
1291	chr12	103635548	103636180	+	0	NA	intron (NR_103526, intron 10 of 10)	intron (NR_103526, intron 10 of 10)	90244	NR_126333	101929058	Hs.171310	NR_126333	ENSG00000257860	LOC101929058	-	uncharacterized LOC101929058	ncRNA
2095	chr15	73668647	73668727	+	0	NA	Intergenic	(CAGAGA)n|Simple_repeat|Simple_repeat	-7082	NM_005477	10021	Hs.86941	NM_005477	ENSG00000138622	HCN4	SSS2	hyperpolarization activated cyclic nucleotide gated potassium channel 4	protein-coding
5584	chr8	29657945	29658081	+	0	NA	Intergenic	Intergenic	28007	NR_125817	101929470	Hs.204721	NR_125817	ENSG00000248964	LOC101929470	-	uncharacterized LOC101929470	ncRNA
2599	chr18	20718373	20718413	+	0	NA	intron (NM_001100619, intron 1 of 9)	intron (NM_001100619, intron 1 of 9)	2666	NM_001100619	91768	Hs.11108	NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
2601	chr18	20718743	20718813	+	0	NA	intron (NM_001100619, intron 1 of 9)	intron (NM_001100619, intron 1 of 9)	3051	NM_001100619	91768	Hs.11108	NM_138375	ENSG00000134508	CABLES1	CABL1|CABLES|HsT2563|IK3-1	Cdk5 and Abl enzyme substrate 1	protein-coding
3227	chr2	122012711	122012858	+	0	NA	intron (NM_014553, intron 2 of 14)	intron (NM_014553, intron 2 of 14)	29994	NM_014553	29842	Hs.156471	NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
2960	chr2	24882975	24883271	+	0	NA	intron (NM_147223, intron 3 of 21)	intron (NM_147223, intron 3 of 21)	75777	NM_147223	8648	Hs.596314	NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
5913	chr9	66970917	66970931	+	0	NA	intron (NR_135597, intron 4 of 4).3	intron (NR_135597, intron 4 of 4).3	47957	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
5551	chr8	9637696	9638247	+	0	NA	3' UTR (NM_003747, exon 27 of 27)	3' UTR (NM_003747, exon 27 of 27)	38789	NR_030327	693182		NR_030327	ENSG00000207701	MIR597	MIRN597|hsa-mir-597|mir-597	microRNA 597	ncRNA
5346	chr7	91066192	91066254	+	0	NA	Intergenic	Intergenic	172440	NM_003505	8321	Hs.94234	NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
1052	chr11	126849245	126849324	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	9154	NR_036126	100422918		NR_036126	ENSG00000266215	MIR3167	-	microRNA 3167	ncRNA
4522	chr5	123919697	123919934	+	0	NA	Intergenic	Intergenic	-145602	NR_125774	103724389	Hs.582211	NR_125774		LINC01170	-	long intergenic non-protein coding RNA 1170	ncRNA
4188	chr4	49633939	49633964	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	645292	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
4250	chr4	81228144	81228618	+	0	NA	Intergenic	Intergenic	-28493	NM_001206997	255119	Hs.527104	NM_152770	ENSG00000197826	C4orf22	-	chromosome 4 open reading frame 22	protein-coding
5438	chr7	126418592	126418748	+	0	NA	intron (NM_001127323, intron 6 of 10)	intron (NM_001127323, intron 6 of 10)	279568	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
1493	chr13	73747162	73747780	+	0	NA	Intergenic	Intergenic	114541	NM_001730	688	Hs.508234	NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	Kruppel like factor 5	protein-coding
5617	chr8	43097089	43097157	+	0	NA	Intergenic	SAR|Satellite|Satellite	-50462	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
6186	chrUn_gl000216	76237	76243	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5471	chr7	133215248	133215455	+	0	NA	intron (NM_021807, intron 9 of 17)	Tigger3a|DNA|TcMar-Tigger	239716	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
6105	chr9_gl000199_random	139989	143704	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
5661	chr8	73522513	73522770	+	0	NA	intron (NM_004770, intron 2 of 2)	intron (NM_004770, intron 2 of 2)	73015	NM_004770	9312	Hs.661102	NM_004770	ENSG00000182674	KCNB2	KV2.2	potassium voltage-gated channel subfamily B member 2	protein-coding
2397	chr16	85592141	85592420	+	0	NA	Intergenic	Intergenic	-52749	NM_001134473	23199	Hs.461647	NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
4298	chr4	114032085	114032125	+	0	NA	intron (NM_001148, intron 1 of 45)	intron (NM_001148, intron 1 of 45)	4086	NR_031641	100302188		NR_031641	ENSG00000283193	MIR1243	MIRN1243|hsa-mir-1243	microRNA 1243	ncRNA
974	chr11	92711984	92712263	+	0	NA	intron (NM_005959, intron 1 of 1)	intron (NM_005959, intron 1 of 1)	9334	NM_005959	4544	Hs.569039	NM_005959	ENSG00000134640	MTNR1B	FGQTL2|MEL-1B-R|MT2	melatonin receptor 1B	protein-coding
6412	chrY	13811036	13811050	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	722346	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
2629	chr18	31385817	31385927	+	0	NA	Intergenic	MIR|SINE|MIR	227331	NM_030632	80816	Hs.464876	NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	additional sex combs like 3, transcriptional regulator	protein-coding
1668	chr14	36785351	36785670	+	0	NA	intron (NM_016586, intron 2 of 8)	Eulor6E|DNA?|DNA?	4372	NM_016586	51562	Hs.368647	NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
1715	chr14	51676544	51676629	+	0	NA	Intergenic	Intergenic	-30300	NM_030755	81542	Hs.125221	NM_030755	ENSG00000139921	TMX1	PDIA11|TMX|TXNDC|TXNDC1	thioredoxin related transmembrane protein 1	protein-coding
1613	chr13	112332015	112332017	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	83660	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA
4247	chr4	77561099	77561367	+	0	NA	intron (NM_020859, intron 2 of 10)	intron (NM_020859, intron 2 of 10)	64529	NR_039655	100616254		NR_039655	ENSG00000283682	MIR548AH	-	microRNA 548ah	ncRNA
6278	chrX	58561165	58561225	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-624128	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger, X-linked, duplicated A	protein-coding
636	chr10	42528596	42528625	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	334883	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
5064	chr6	153466854	153467018	+	0	NA	Intergenic	L1PBa|LINE|L1	-14547	NM_012419	26575	Hs.166313	NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G-protein signaling 17	protein-coding
1104	chr12	6482529	6482886	+	0	NA	intron (NM_001159576, intron 1 of 11)	intron (NM_001159576, intron 1 of 11)	1683	NM_001159576	6337	Hs.591047	NM_001038	ENSG00000111319	SCNN1A	BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1	sodium channel epithelial 1 alpha subunit	protein-coding
1406	chr12	128113893	128114018	+	0	NA	Intergenic	Intergenic	7057	NR_120451	101927637	Hs.170413	NR_120451	ENSG00000256022	LOC101927637	-	uncharacterized LOC101927637	ncRNA
5092	chr6	169989449	169989648	+	0	NA	intron (NM_182552, intron 23 of 25)	intron (NM_182552, intron 23 of 25)	112611	NM_182552	253769	Hs.131903	NM_182552	ENSG00000184465	WDR27	-	WD repeat domain 27	protein-coding
5799	chr8	125793022	125793306	+	0	NA	Intergenic	AluSx|SINE|Alu	-41063	NR_039806	100616221		NR_039806	ENSG00000283609	MIR4662A	-	microRNA 4662a	ncRNA
1905	chr14	88819020	88819392	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	-25950	NM_021161	54207	Hs.560255	NM_021161	ENSG00000100433	KCNK10	K2p10.1|PPP1R97|TREK-2|TREK2	potassium two pore domain channel subfamily K member 10	protein-coding
3203	chr2	100187835	100187981	+	0	NA	intron (NM_001025108, intron 17 of 23)	intron (NM_001025108, intron 17 of 23)	-81390	NR_135650	51455	Hs.443077	NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1, DNA directed polymerase	protein-coding
117	chr1	48919579	48919710	+	0	NA	intron (NM_019073, intron 1 of 12)	intron (NM_019073, intron 1 of 12)	18236	NM_001286238	54558	Hs.538103	NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
2207	chr16	28166858	28166925	+	0	NA	intron (NM_001270940, intron 8 of 24)	intron (NM_001270940, intron 8 of 24)	56348	NM_001270940	23214	Hs.460468	NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
3754	chr22	18883626	18883627	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-1682	NR_136571	100996432	Hs.631668	NR_136571		LINC01663	-	long intergenic non-protein coding RNA 1663	ncRNA
5283	chr7	66878710	66879039	+	0	NA	Intergenic	Intergenic	77911	NR_108104	101929736	Hs.634050	NR_108104	ENSG00000235475	LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
2472	chr17	37926527	37926603	+	0	NA	intron (NM_001257413, intron 3 of 3)	intron (NM_001257413, intron 3 of 3)	7913	NM_001284516	22806	Hs.371680	NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
5460	chr7	130061108	130061595	+	0	NA	3' UTR (NM_001257160, exon 3 of 3)	3' UTR (NM_001257160, exon 3 of 3)	19700	NM_001257159	95681	Hs.368315	NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
821	chr11	20948591	20948726	+	0	NA	intron (NM_201551, intron 7 of 18)	intron (NM_201551, intron 7 of 18)	257561	NM_001288714	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding
696	chr10	80230314	80230592	+	0	NA	Intergenic	Intergenic	203368	NR_073447	414243	Hs.55047	NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
4586	chr5	150849353	150849396	+	0	NA	intron (NM_001308151, intron 8 of 8)	AT_rich|Low_complexity|Low_complexity	22217	NM_078483	206358	Hs.269004	NM_078483	ENSG00000123643	SLC36A1	Dct1|LYAAT1|PAT1|TRAMD3	solute carrier family 36 member 1	protein-coding
6013	chr9	98031112	98031265	+	0	NA	intron (NM_000136, intron 1 of 14)	intron (NM_000136, intron 1 of 14)	48348	NM_001243743	2176	Hs.494529	NM_000136	ENSG00000158169	FANCC	FA3|FAC|FACC	Fanconi anemia complementation group C	protein-coding
1721	chr14	51974303	51974593	+	0	NA	intron (NM_001042481, intron 1 of 14)	intron (NM_001042481, intron 1 of 14)	18609	NM_001042481	122786	Hs.434914	NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
3376	chr2	213000184	213000500	+	0	NA	intron (NM_005235, intron 1 of 27)	intron (NM_005235, intron 1 of 27)	290742	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
2179	chr16	12991864	12992205	+	0	NA	Intergenic	Intergenic	-3443	NM_001145205	729993	Hs.130661	NM_001145204	ENSG00000237515	SHISA9	CKAMP44	shisa family member 9	protein-coding
2172	chr16	12327868	12328270	+	0	NA	intron (NM_032167, intron 14 of 20)	L1MB7|LINE|L1	257478	NM_032167	92017	Hs.458401	NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
1431	chr13	22508406	22508670	+	0	NA	Intergenic	L2c|LINE|L2	-56239	NR_047040	100874182	Hs.148951	NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
1489	chr13	51041451	51042039	+	0	NA	intron (NR_109974, intron 4 of 6)	intron (NR_109974, intron 4 of 6)	59840	NR_125753	103689915	Hs.722230	NR_125753	ENSG00000229323	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
3050	chr2	64558923	64559204	+	0	NA	Intergenic	Intergenic	-8830	NR_039632	100616265		NR_039632	ENSG00000283222	MIR4433A	MIR4433|hsa-mir-4433a	microRNA 4433a	ncRNA
4565	chr5	136712312	136712527	+	0	NA	intron (NM_004598, intron 2 of 10)	intron (NM_004598, intron 2 of 10)	122599	NM_004598	6695	Hs.596136	NM_004598	ENSG00000152377	SPOCK1	SPOCK|TESTICAN|TIC1	SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1	protein-coding
1805	chr14	69601743	69601898	+	0	NA	intron (NM_001284206, intron 1 of 8)	Charlie1a|DNA|hAT-Charlie	17496	NM_001284207	8816	Hs.509780	NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
3226	chr2	122012262	122012710	+	0	NA	intron (NM_014553, intron 2 of 14)	intron (NM_014553, intron 2 of 14)	30292	NM_014553	29842	Hs.156471	NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
1727	chr14	54810163	54810331	+	0	NA	Intergenic	Intergenic	-53339	NM_001330173	1033	Hs.84113	NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
2922	chr2	5264005	5264206	+	0	NA	Intergenic	Intergenic	-560293	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
5333	chr7	80552593	80552714	+	0	NA	Intergenic	Intergenic	-3986	NM_006379	10512	Hs.269109	NM_006379	ENSG00000075223	SEMA3C	SEMAE|SemE	semaphorin 3C	protein-coding
5229	chr7	61080227	61080240	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1684201	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
6094	chr9_gl000199_random	35214	35289	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
4967	chr6	104373224	104373525	+	0	NA	Intergenic	Intergenic	934047	NM_001321084	57531	Hs.434340	NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
2178	chr16	12991695	12991863	+	0	NA	Intergenic	Intergenic	-3698	NM_001145205	729993	Hs.130661	NM_001145204	ENSG00000237515	SHISA9	CKAMP44	shisa family member 9	protein-coding
6203	chrUn_gl000216	154567	154584	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
1225	chr12	79395086	79395260	+	0	NA	intron (NM_001291901, intron 2 of 9)	intron (NM_001291901, intron 2 of 9)	-44260	NM_001135806	6857	Hs.310545	NM_005639	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin 1	protein-coding
290	chr1	142537215	142537421	+	0	NA	Intergenic	(GAATG)n|Simple_repeat|Simple_repeat	176287	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	ankyrin repeat domain 20 family member A12, pseudogene	pseudo
2909	chr2	4428524	4428631	+	0	NA	Intergenic	Intergenic	275235	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
5220	chr7	61079046	61079576	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1685123	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
210	chr1	87569085	87569222	+	0	NA	exon (NM_012262, exon 6 of 7)	exon (NM_012262, exon 6 of 7)	-26295	NR_026989	339524	Hs.306423	NM_207357	ENSG00000267272	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA
712	chr10	94480385	94480707	+	0	NA	Intergenic	MIRb|SINE|MIR	30865	NM_002729	3087	Hs.118651	NM_002729	ENSG00000152804	HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
5706	chr8	93848199	93848398	+	0	NA	Intergenic	Intergenic	-50010	NR_046114	441369	Hs.521683	NR_046114	ENSG00000248858	FLJ46284	-	uncharacterized LOC441369	ncRNA
6339	chrX	131727872	131728104	+	0	NA	Intergenic	Intergenic	-73682	NR_046691	100874102	Hs.619341	NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
5381	chr7	107903666	107903872	+	0	NA	intron (NM_005010, intron 3 of 27)	intron (NM_005010, intron 3 of 27)	-23155	NM_001037132	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
2560	chr18	3595618	3595923	+	0	NA	intron (NR_024101, intron 2 of 2)	intron (NR_024101, intron 2 of 2)	1658	NR_024101	649446	Hs.19872	NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
3365	chr2	210360994	210360996	+	0	NA	intron (NM_001039538, intron 1 of 14)	L2c|LINE|L2	72224	NM_001039538	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding
5764	chr8	109055565	109055757	+	0	NA	intron (NM_178565, intron 2 of 5)	intron (NM_178565, intron 2 of 5)	38506	NM_001317942	340419	Hs.444834	NM_178565	ENSG00000147655	RSPO2	CRISTIN2	R-spondin 2	protein-coding
2702	chr18	45131580	45131957	+	0	NA	Intergenic	Intergenic	224901	NR_039753	100616264		NR_039753	ENSG00000266582	MIR4527	-	microRNA 4527	ncRNA
4529	chr5	124611266	124611503	+	0	NA	intron (NR_109882, intron 4 of 5)	intron (NR_109882, intron 4 of 5)	-217570	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
6040	chr9	114736334	114736374	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	41974	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
2593	chr18	18747439	18747804	+	0	NA	Intergenic	Intergenic	-55809	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
6070	chr9	131330880	131331142	+	0	NA	intron (NM_003127, intron 2 of 55)	intron (NM_003127, intron 2 of 55)	16174	NM_001195532	6709	Hs.372331	NM_003127	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
3196	chr2	99525996	99526227	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	26573	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211 like	protein-coding
5670	chr8	81079393	81079553	+	0	NA	intron (NR_105035, intron 1 of 6)	intron (NR_105035, intron 1 of 6)	3962	NR_105037	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
5074	chr6	156940283	156940556	+	0	NA	Intergenic	Intergenic	-158570	NM_001346813	57492	Hs.291587	NM_017519	ENSG00000049618	ARID1B	6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R	AT-rich interaction domain 1B	protein-coding
1895	chr14	85341090	85341353	+	0	NA	Intergenic	Intergenic	-512398	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
2920	chr2	5263515	5263684	+	0	NA	Intergenic	Intergenic	-559787	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
6305	chrX	61731272	61731377	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	839894	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
5305	chr7	69229101	69229488	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	165389	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
2038	chr15	58535925	58536311	+	0	NA	Intergenic	MIR|SINE|MIR	105723	NM_001320635	366	Hs.104624	NM_020980	ENSG00000103569	AQP9	AQP-9|HsT17287|SSC1|T17287	aquaporin 9	protein-coding
4465	chr5	51306528	51306772	+	0	NA	Intergenic	Intergenic	-627484	NR_046243	642366	Hs.544139	NR_046243		LOC642366	-	uncharacterized LOC642366	ncRNA
4283	chr4	98270973	98271702	+	0	NA	Intergenic	Intergenic	-16740	NR_102713	101410545	Hs.628520	NR_102713	ENSG00000251620	STPG2-AS1	-	STPG2 antisense RNA 1	ncRNA
3799	chr22	39320762	39320946	+	0	NA	Intergenic	Charlie25|DNA|hAT-Charlie	-32673	NM_145699	200315	Hs.226307	NM_145699	ENSG00000128383	APOBEC3A	A3A|ARP3|PHRBN|bK150C2.1	apolipoprotein B mRNA editing enzyme catalytic subunit 3A	protein-coding
4399	chr5	4516500	4516544	+	0	NA	Intergenic	Intergenic	-257072	NR_104619	101929153	Hs.385526	NR_104619	ENSG00000249521	LINC02114	-	long intergenic non-protein coding RNA 2114	ncRNA
1159	chr12	34842056	34842081	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	666852	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
2048	chr15	60651098	60651435	+	0	NA	intron (NM_001002857, intron 6 of 13)	intron (NM_001002857, intron 6 of 13)	38919	NM_004039	302	Hs.511605	NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
4512	chr5	110783820	110784117	+	0	NA	intron (NM_001323374, intron 7 of 11)	intron (NM_001323374, intron 7 of 11)	-63956	NR_040093	100505678	Hs.745061	NR_040093	ENSG00000246859	STARD4-AS1	-	STARD4 antisense RNA 1	ncRNA
655	chr10	42817516	42817578	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	45946	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
6238	chrUn_gl000228	115843	116197	+	0	NA	intron (NR_137167, intron 2 of 5)	BSR/Beta|Satellite|Satellite	3415	NM_001306068	100288687	Hs.728749	NM_001205218	ENSG00000260596	DUX4	DUX4L	double homeobox 4	protein-coding
3110	chr2	89865909	89865939	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	754040	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
421	chr1	206878446	206878627	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	20171	NM_004759	9261	Hs.643566	NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	mitogen-activated protein kinase-activated protein kinase 2	protein-coding
5717	chr8	94457455	94457487	+	0	NA	intron (NR_033858, intron 7 of 10)	intron (NR_033858, intron 7 of 10)	255190	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	ncRNA
2332	chr16	54540617	54540675	+	0	NA	Intergenic	Intergenic	-136035	NR_134923	100996345	Hs.112680	NR_134922	ENSG00000261803	LINC02140	-	long intergenic non-protein coding RNA 2140	ncRNA
4644	chr6	5729593	5729751	+	0	NA	intron (NM_006567, intron 6 of 6)	intron (NM_006567, intron 6 of 6)	-34167	NR_110842	101927950	Hs.571136	NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
6354	chrY	13140991	13141231	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1392278	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
271	chr1	121353792	121354156	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	93064	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
3742	chr22	18688088	18688169	+	0	NA	intron (NR_136570, intron 1 of 11)	AluSc8|SINE|Alu	502	NR_136570	100996415	Hs.645542	NR_136570		LOC100996415	-	uncharacterized LOC100996415	ncRNA
1024	chr11	115904668	115904984	+	0	NA	Intergenic	Intergenic	-273908	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
4822	chr6	52362311	52362544	+	0	NA	3' UTR (NM_012288, exon 11 of 11)	3' UTR (NM_012288, exon 11 of 11)	76622	NM_001172420	114327	Hs.403171	NM_018100	ENSG00000096093	EFHC1	EJM1|dJ304B14.2	EF-hand domain containing 1	protein-coding
3174	chr2	92291830	92291851	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	162681	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
2867	chr19	49907238	49907719	+	0	NA	intron (NM_144688, intron 9 of 19)	intron (NM_144688, intron 9 of 19)	16003	NM_144688	147872	Hs.662085	NM_144688	ENSG00000161609	CCDC155	KASH5	coiled-coil domain containing 155	protein-coding
491	chr1	226911812	226912003	+	0	NA	intron (NM_002221, intron 2 of 7)	MIRb|SINE|MIR	14969	NM_002221	3707	Hs.528087	NM_002221	ENSG00000143772	ITPKB	IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37	inositol-trisphosphate 3-kinase B	protein-coding
2871	chr19_gl000208_random	1	4	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
1863	chr14	79092214	79092478	+	0	NA	intron (NM_004796, intron 1 of 16)	MIRc|SINE|MIR	222272	NM_004796	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
4495	chr5	78204108	78204130	+	0	NA	intron (NM_198709, intron 5 of 7)	intron (NM_198709, intron 5 of 7)	77647	NM_198709	411	Hs.149103	NM_000046	ENSG00000113273	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
13	chr1	725500	725551	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-11457	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
3953	chr3	127729989	127730122	+	0	NA	Intergenic	LTR8A|LTR|ERV1	-41157	NM_013336	29927	Hs.518236	NM_013336	ENSG00000058262	SEC61A1	HNFJ4|HSEC61|SEC61|SEC61A	Sec61 translocon alpha 1 subunit	protein-coding
5852	chr9	8086420	8086579	+	0	NA	Intergenic	Intergenic	-286693	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
4672	chr6	18861729	18861924	+	0	NA	Intergenic	Intergenic	289811	NR_030312	693125		NR_030312	ENSG00000207775	MIR548A1	MIRN548A1	microRNA 548a-1	ncRNA
1514	chr13	93372403	93372472	+	0	NA	promoter-TSS (NR_049776)	promoter-TSS (NR_049776)	-210	NR_049775	100873969	Hs.577863	NR_046520	ENSG00000235984	GPC5-AS1	-	GPC5 antisense RNA 1	ncRNA
4098	chr4	16124699	16124819	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-39136	NM_001145848	8842	Hs.614734	NM_006017	ENSG00000007062	PROM1	AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4	prominin 1	protein-coding
4906	chr6	83402676	83402740	+	0	NA	Intergenic	Intergenic	328747	NM_001166392	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
840	chr11	31778769	31779006	+	0	NA	intron (NM_001288726, intron 10 of 11)	intron (NM_001288726, intron 10 of 11)	46898	NM_001310161	5080	Hs.270303	NM_000280	ENSG00000007372	PAX6	AN|AN2|D11S812E|FVH1|MGDA|WAGR	paired box 6	protein-coding
1647	chr14	28465104	28465299	+	0	NA	Intergenic	Intergenic	-362717	NR_130461	100422830		NR_130461	ENSG00000264657	MIR3171	-	microRNA 3171	ncRNA
4693	chr6	20718299	20718938	+	0	NA	intron (NM_017774, intron 5 of 15)	intron (NM_017774, intron 5 of 15)	183930	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
597	chr10	39094249	39094494	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	104644	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
4541	chr5	125456880	125456947	+	0	NA	Intergenic	Intergenic	-58357	NR_105042	102546228	Hs.582529	NR_105042	ENSG00000248107	LINC02039	-	long intergenic non-protein coding RNA 2039	ncRNA
4372	chr4	184492686	184492988	+	0	NA	Intergenic	Intergenic	65602	NM_001291959	3622	Hs.107153	NM_001564	ENSG00000168556	ING2	ING1L|p33ING2	inhibitor of growth family member 2	protein-coding
1411	chr12	129562571	129562975	+	0	NA	intron (NM_133448, intron 8 of 8)	intron (NM_133448, intron 8 of 8)	-31462	NR_104173	283352	Hs.665667	NR_104172	ENSG00000249196	LOC283352	-	uncharacterized LOC283352	ncRNA
5785	chr8	123981670	123981810	+	0	NA	intron (NM_014943, intron 3 of 3)	L1MA10|LINE|L1	72923	NM_001330601	79139	Hs.241576	NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
1480	chr13	49390842	49391075	+	0	NA	Intergenic	Intergenic	-159090	NM_001079673	22862	Hs.508010	NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
4793	chr6	41255577	41256128	+	0	NA	Intergenic	Intergenic	-1369	NR_136332	54210	Hs.283022	NM_018643	ENSG00000124731	TREM1	CD354|TREM-1	triggering receptor expressed on myeloid cells 1	protein-coding
4867	chr6	61914497	61914526	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-369497	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
3265	chr2	148137230	148137245	+	0	NA	Intergenic	L2c|LINE|L2	-464849	NM_001278580	92	Hs.470174	NM_001616	ENSG00000121989	ACVR2A	ACTRII|ACVR2	activin A receptor type 2A	protein-coding
3581	chr20	58516572	58516754	+	0	NA	intron (NM_001190827, intron 1 of 3)	intron (NM_001190827, intron 1 of 3)	1219	NM_001190827	63939	Hs.54973	NM_022106	ENSG00000196227	FAM217B	C20orf177|dJ551D2.5	family with sequence similarity 217 member B	protein-coding
242	chr1	110824494	110824611	+	0	NA	Intergenic	Intergenic	57241	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	ncRNA
32	chr1	9960130	9960400	+	0	NA	intron (NM_020248, intron 1 of 5)	AluSc8|SINE|Alu	10051	NM_020248	56998	Hs.463759	NM_020248	ENSG00000178585	CTNNBIP1	ICAT	catenin beta interacting protein 1	protein-coding
1588	chr13	107881714	107881885	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	301797	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
5744	chr8	101891799	101892252	+	0	NA	Intergenic	Intergenic	70774	NM_001135702	7534	Hs.492407	NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
4138	chr4	49113290	49113820	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	124896	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
443	chr1	209630127	209630218	+	0	NA	Intergenic	Intergenic	24694	NR_029622	406988		NR_029622	ENSG00000230937	MIR205	MIRN205|mir-205	microRNA 205	ncRNA
6213	chrUn_gl000216	163762	163883	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
5611	chr8	43096284	43096314	+	0	NA	Intergenic	SAR|Satellite|Satellite	-51286	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
2234	chr16	33896115	33896125	+	0	NA	Intergenic	HSATII|Satellite|Satellite	66383	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
1795	chr14	68578265	68578337	+	0	NA	intron (NM_001321809, intron 7 of 11)	intron (NM_001321809, intron 7 of 11)	287992	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
5252	chr7	61791855	61792074	+	0	NA	Intergenic	HSATII|Satellite|Satellite	972470	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
4391	chr5	2154994	2155159	+	0	NA	Intergenic	Intergenic	157239	NR_104616	100506858	Hs.445071	NR_104616		LOC100506858	-	uncharacterized LOC100506858	ncRNA
5662	chr8	73735190	73735211	+	0	NA	intron (NM_004770, intron 2 of 2)	intron (NM_004770, intron 2 of 2)	90920	NR_110656	101926908	Hs.680588	NR_110656	ENSG00000253726	LOC101926908	-	uncharacterized LOC101926908	ncRNA
3519	chr20	26318660	26318673	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-128797	NR_040095	284801	Hs.370699	NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
3273	chr2	157418615	157418763	+	0	NA	intron (NM_000408, intron 9 of 16)	intron (NM_000408, intron 9 of 16)	125789	NM_000408	2820	Hs.512382	NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
846	chr11	34653196	34653622	+	0	NA	promoter-TSS (NM_001206616)	promoter-TSS (NM_001206616)	-602	NM_001206616	26298	Hs.653859	NM_012153	ENSG00000135373	EHF	ESE3|ESE3B|ESEJ	ETS homologous factor	protein-coding
1689	chr14	37240715	37240823	+	0	NA	intron (NM_030631, intron 3 of 9)	intron (NM_030631, intron 3 of 9)	113996	NM_006194	5083	Hs.132576	NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding
1861	chr14	78808186	78808451	+	0	NA	intron (NR_073547, intron 4 of 20)	intron (NR_073547, intron 4 of 20)	-61756	NM_004796	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
3484	chr20	13181826	13182170	+	0	NA	Intergenic	L2b|LINE|L2	-20420	NM_080826	140862	Hs.559353	NM_080826	ENSG00000101230	ISM1	C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1	isthmin 1	protein-coding
2825	chr19	14665200	14665381	+	0	NA	intron (NM_001321170, intron 2 of 13)	intron (NM_001321170, intron 2 of 13)	17599	NM_004146	4713	Hs.532853	NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
1296	chr12	104074914	104075050	+	0	NA	intron (NM_017564, intron 25 of 68)	intron (NM_017564, intron 25 of 68)	93913	NM_017564	55576	Hs.408249	NM_017564	ENSG00000136011	STAB2	FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1	stabilin 2	protein-coding
3312	chr2	173754123	173754179	+	0	NA	intron (NM_001282899, intron 1 of 27)	intron (NM_001282899, intron 1 of 27)	29385	NM_001282899	11069	Hs.470646	NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
1553	chr13	100395741	100396054	+	0	NA	intron (NR_120421, intron 4 of 4)	intron (NR_120421, intron 4 of 4)	-14642	NR_120383	101927465	Hs.130690	NR_046525		CLYBL-AS1	-	CLYBL antisense RNA 1	ncRNA
3415	chr2	229947918	229948206	+	0	NA	intron (NM_001330157, intron 1 of 1)	intron (NM_001330157, intron 1 of 1)	148746	NM_001330156	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
6445	chrY	13844119	13844153	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	689253	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
2161	chr16	7506285	7506453	+	0	NA	intron (NM_145892, intron 1 of 12)	intron (NM_145892, intron 1 of 12)	123618	NM_145893	54715	Hs.459842	NM_018723	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog 1	protein-coding
2897	chr2	4124302	4124505	+	0	NA	Intergenic	Intergenic	102652	NR_136322	105373394	Hs.742693	NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
4051	chr3	183095289	183095579	+	0	NA	intron (NM_015078, intron 3 of 29)	L2b|LINE|L2	50623	NM_015078	23101	Hs.208267	NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
1303	chr12	104670576	104670895	+	0	NA	intron (NM_001093771, intron 3 of 16)	intron (NM_001093771, intron 3 of 16)	-9725	NM_182742	7296	Hs.654922	NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR	thioredoxin reductase 1	protein-coding
4195	chr4	49637725	49638448	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	649427	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
5950	chr9	72653081	72653565	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-5174	NM_001347990	256691	Hs.547172	NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding
5432	chr7	126218671	126218787	+	0	NA	intron (NM_001127323, intron 8 of 10)	intron (NM_001127323, intron 8 of 10)	479509	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
4738	chr6	24077563	24077701	+	0	NA	Intergenic	L1PB3|LINE|L1	-48782	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
1654	chr14	29685942	29686251	+	0	NA	Intergenic	Intergenic	-431103	NR_135255	105370424	Hs.375809	NR_135255	ENSG00000257056	LOC105370424	-	uncharacterized LOC105370424	ncRNA
3494	chr20	18647548	18647622	+	0	NA	intron (NM_080820, intron 4 of 5)	intron (NM_080820, intron 4 of 5)	31767	NR_109955	101929526	Hs.639402	NR_109955	ENSG00000233993	LOC101929526	-	uncharacterized LOC101929526	ncRNA
5719	chr8	94457574	94457736	+	0	NA	intron (NR_033858, intron 7 of 10)	intron (NR_033858, intron 7 of 10)	255006	NR_033858	642924	Hs.434882	NR_033858	ENSG00000246662	LINC00535	-	long intergenic non-protein coding RNA 535	ncRNA
3510	chr20	26305690	26305857	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-115904	NR_040095	284801	Hs.370699	NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
4638	chr6	3209794	3209809	+	0	NA	Intergenic	Intergenic	-13800	NR_038295	100507194	Hs.678053	NR_038295	ENSG00000230269	LOC100507194	-	uncharacterized LOC100507194	ncRNA
15	chr1	726099	726216	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-12089	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
3268	chr2	149822802	149823034	+	0	NA	intron (NM_004522, intron 11 of 25)	intron (NM_004522, intron 11 of 25)	18574	NR_111932	3800	Hs.435557	NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
4624	chr5	175611044	175611200	+	0	NA	intron (NR_036494, intron 4 of 25)	MER101-int|LTR|ERV1	15176	NR_036494	643201	Hs.390285	NR_036494	ENSG00000248596	LOC643201	-	centrosomal protein 192kDa pseudogene	pseudo
3016	chr2	50354397	50354556	+	0	NA	intron (NM_001135659, intron 19 of 23)	intron (NM_001135659, intron 19 of 23)	-153135	NM_001320157	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
2236	chr16	33896155	33896320	+	0	NA	Intergenic	HSATII|Satellite|Satellite	66266	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
1506	chr13	79640504	79640752	+	0	NA	Intergenic	Intergenic	-226443	NR_046869	100874126	Hs.577893	NR_046869		LINC00331	NCRNA00331	long intergenic non-protein coding RNA 331	ncRNA
4026	chr3	177000208	177000282	+	0	NA	Intergenic	Intergenic	-11985	NR_047465	100820709	Hs.518409	NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
2855	chr19	46544613	46544838	+	0	NA	promoter-TSS (NM_001002923)	promoter-TSS (NM_001002923)	-451	NM_001002923	444882	Hs.531310	NM_001002923	ENSG00000204869	IGFL4	-	IGF like family member 4	protein-coding
4810	chr6	49707065	49707253	+	0	NA	intron (NM_001190986, intron 1 of 7)	intron (NM_001190986, intron 1 of 7)	5009	NM_001190986	10321	Hs.404466	NM_006061	ENSG00000096006	CRISP3	Aeg2|CRISP-3|CRS3|SGP28|dJ442L6.3	cysteine rich secretory protein 3	protein-coding
6312	chrX	61839140	61839150	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	732073	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
2145	chr15	101667815	101667935	+	0	NA	Intergenic	LTR67B|LTR|ERVL	124262	NM_014918	22856	Hs.110488	NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
859	chr11	51568833	51568842	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	53555	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
3693	chr21	37347435	37347723	+	0	NA	intron (NR_110418, intron 4 of 5)	AluSx|SINE|Alu	29386	NR_110418	101928269	Hs.589909	NR_110418		LOC101928269	-	uncharacterized LOC101928269	ncRNA
4284	chr4	100675431	100675747	+	0	NA	Intergenic	Intergenic	-62392	NM_014395	27071	Hs.436271	NM_014395	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein-coding
739	chr10	112554836	112555332	+	0	NA	intron (NM_001134363, intron 5 of 13)	intron (NM_001134363, intron 5 of 13)	75578	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
4507	chr5	102003968	102004300	+	0	NA	intron (NR_103753, intron 1 of 2)	intron (NR_103753, intron 1 of 2)	3034	NR_103756	285708	Hs.533011	NR_103753		LINC00491	-	long intergenic non-protein coding RNA 491	ncRNA
876	chr11	51579206	51579724	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	64183	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
5636	chr8	61704969	61705133	+	0	NA	intron (NM_017780, intron 3 of 37)	intron (NM_017780, intron 3 of 37)	51233	NM_001316690	55636	Hs.20395	NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
2890	chr2	1976460	1976861	+	0	NA	intron (NM_001329845, intron 8 of 24)	intron (NM_001329845, intron 8 of 24)	-228341	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
3967	chr3	132279008	132280312	+	0	NA	intron (NM_032169, intron 18 of 19)	MIRb|SINE|MIR	-36421	NM_016557	51554	Hs.310512	NM_016557	ENSG00000129048	ACKR4	CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding
4751	chr6	24584692	24584892	+	0	NA	intron (NM_014809, intron 4 of 20)	intron (NM_014809, intron 4 of 20)	-1337	NM_001252328	9856	Hs.26441	NM_014809	ENSG00000137261	KIAA0319	DYLX2|DYX2|NMIG	KIAA0319	protein-coding
135	chr1	51099246	51099259	+	0	NA	intron (NM_007051, intron 8 of 18)	intron (NM_007051, intron 8 of 18)	-210133	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
3344	chr2	200175539	200175827	+	0	NA	intron (NM_001172509, intron 9 of 10)	intron (NM_001172509, intron 9 of 10)	147136	NR_134967	23314	Hs.516617	NM_015265	ENSG00000119042	SATB2	GLSS	SATB homeobox 2	protein-coding
3913	chr3	112870612	112870770	+	0	NA	intron (NR_110823, intron 3 of 3)	intron (NR_110823, intron 3 of 3)	15887	NR_110823	101929717	Hs.638426	NR_110823	ENSG00000243795	LINC02044	-	long intergenic non-protein coding RNA 2044	ncRNA
4687	chr6	19893076	19893164	+	0	NA	Intergenic	MIR|SINE|MIR	55519	NM_001546	3400	Hs.519601	NM_001546	ENSG00000172201	ID4	IDB4|bHLHb27	inhibitor of DNA binding 4, HLH protein	protein-coding
6489	chrY	58972248	58972778	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	-127890	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
145	chr1	58144077	58144337	+	0	NA	intron (NM_021080, intron 2 of 16)	intron (NM_021080, intron 2 of 16)	-182008	NR_104363	101926890	Hs.662207	NR_104362	ENSG00000226759	DAB1-AS1	-	DAB1 antisense RNA 1	ncRNA
2674	chr18	37779738	37779747	+	0	NA	Intergenic	Intergenic	133492	NR_110791	101927900	Hs.385522	NR_110791	ENSG00000261715	LINC01477	-	long intergenic non-protein coding RNA 1477	ncRNA
1131	chr12	21590233	21590271	+	0	NA	promoter-TSS (NM_024854)	promoter-TSS (NM_024854)	-286	NM_024854	79912	Hs.709545	NM_024854	ENSG00000121350	PYROXD1	MFM8	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding
3624	chr21	10819350	10820106	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	171215	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
772	chr11	13001624	13001839	+	0	NA	non-coding (NR_038904, exon 2 of 2)	non-coding (NR_038904, exon 2 of 2)	9364	NR_038904	100506305	Hs.153408	NR_038904	ENSG00000251381	LINC00958	-	long intergenic non-protein coding RNA 958	ncRNA
1876	chr14	82533562	82533781	+	0	NA	Intergenic	Intergenic	-444266	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
3803	chr22	40197535	40197600	+	0	NA	intron (NM_152512, intron 5 of 6)	intron (NM_152512, intron 5 of 6)	92227	NM_152512	150350	Hs.474869	NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
1759	chr14	61696003	61696246	+	0	NA	Intergenic	Intergenic	52406	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
4514	chr5	115830845	115831016	+	0	NA	intron (NM_001300780, intron 6 of 19)	intron (NM_001300780, intron 6 of 19)	47736	NR_109879	101927233	Hs.732850	NR_109879	ENSG00000248445	SEMA6A-AS1	CTB-118N6.3	SEMA6A antisense RNA 1	ncRNA
4651	chr6	6835292	6835551	+	0	NA	Intergenic	LTR16C|LTR|ERVL	-212362	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
4605	chr5	156340982	156340984	+	0	NA	Intergenic	Intergenic	49283	NM_138379	91937	Hs.334907	NM_138379	ENSG00000145850	TIMD4	SMUCKLER|TIM4	T-cell immunoglobulin and mucin domain containing 4	protein-coding
2032	chr15	57679843	57679864	+	0	NA	intron (NM_032866, intron 1 of 18)	intron (NM_032866, intron 1 of 18)	11150	NM_001252335	84952	Hs.148989	NM_032866	ENSG00000128849	CGNL1	JACOP|PCING	cingulin like 1	protein-coding
6430	chrY	13839751	13839835	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	693596	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3026	chr2	56065796	56066161	+	0	NA	Intergenic	Intergenic	85320	NM_001039349	2202	Hs.76224	NM_004105	ENSG00000115380	EFEMP1	DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5	EGF containing fibulin like extracellular matrix protein 1	protein-coding
1528	chr13	96182260	96182463	+	0	NA	intron (NR_046533, intron 1 of 3)	intron (NR_046533, intron 1 of 3)	3803	NR_046533	100874194	Hs.569229	NR_046533	ENSG00000223392	CLDN10-AS1	-	CLDN10 antisense RNA 1	ncRNA
653	chr10	42817447	42817455	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	46042	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
1692	chr14	37326264	37326562	+	0	NA	intron (NM_030631, intron 2 of 9)	LFSINE_Vert|SINE|SINE	95183	NR_039725	100616280		NR_039725	ENSG00000266327	MIR4503	-	microRNA 4503	ncRNA
4866	chr6	61914032	61914496	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-369744	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
2677	chr18	38730728	38730792	+	0	NA	Intergenic	Intergenic	369801	NR_002838	641516	Hs.116612	NR_002838	ENSG00000267313	KC6	-	keratoconus gene 6	ncRNA
6456	chrY	13862008	13862054	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	671358	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5439	chr7	126527945	126528049	+	0	NA	intron (NM_001127323, intron 6 of 10)	intron (NM_001127323, intron 6 of 10)	170241	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
4273	chr4	94068605	94068788	+	0	NA	intron (NM_001286838, intron 3 of 14)	intron (NM_001286838, intron 3 of 14)	-681382	NM_005172	474	Hs.532680	NM_005172	ENSG00000172238	ATOH1	ATH1|HATH1|MATH-1|bHLHa14	atonal bHLH transcription factor 1	protein-coding
3064	chr2	68073631	68073839	+	0	NA	Intergenic	Intergenic	-21041	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
509	chr1	245180522	245180555	+	0	NA	intron (NM_001290327, intron 2 of 7)	intron (NM_001290327, intron 2 of 7)	-46367	NR_111907	101928068	Hs.134857	NR_111907		LOC101928068	-	uncharacterized LOC101928068	ncRNA
3708	chr21	40329141	40329283	+	0	NA	Intergenic	Intergenic	-18859	NR_120405	400867	Hs.689509	NR_120405		LOC400867	-	uncharacterized LOC400867	ncRNA
1015	chr11	115280328	115280391	+	0	NA	intron (NM_001098517, intron 1 of 8)	intron (NM_001098517, intron 1 of 8)	12885	NR_135102	105369507	Hs.664155	NR_135102	ENSG00000256315	LOC105369507	-	uncharacterized LOC105369507	ncRNA
976	chr11	92949613	92950058	+	0	NA	Intergenic	Intergenic	-18694	NM_152313	120103	Hs.148766	NM_152313	ENSG00000180773	SLC36A4	PAT4	solute carrier family 36 member 4	protein-coding
367	chr1	182205408	182205484	+	0	NA	intron (NR_104175, intron 2 of 2)	intron (NR_104175, intron 2 of 2)	77750	NR_104175	400799	Hs.634884	NR_104175	ENSG00000228918	LINC01344	GS1-122H1.2	long intergenic non-protein coding RNA 1344	ncRNA
1821	chr14	70564271	70564671	+	0	NA	intron (NM_033262, intron 2 of 7)	intron (NM_033262, intron 2 of 7)	-17537	NM_001130417	6547	Hs.337696	NM_033262	ENSG00000100678	SLC8A3	NCX3	solute carrier family 8 member A3	protein-coding
5741	chr8	101464610	101464850	+	0	NA	Intergenic	Intergenic	69739	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
6174	chrUn_gl000216	54136	54166	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5599	chr8	43092749	43092751	+	0	NA	Intergenic	SAR|Satellite|Satellite	-54835	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
743	chr10	119941160	119941176	+	0	NA	intron (NR_026940, intron 3 of 3)	(GAATG)n|Simple_repeat|Simple_repeat	-134773	NM_001330167	22841	Hs.173656	NM_014904	ENSG00000107560	RAB11FIP2	Rab11-FIP2|nRip11	RAB11 family interacting protein 2	protein-coding
3589	chr21	10085561	10085793	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-117083	NR_038328	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
6037	chr9	113469578	113469696	+	0	NA	intron (NM_005592, intron 5 of 13)	intron (NM_005592, intron 5 of 13)	38586	NM_001166280	4593	Hs.521653	NM_005592	ENSG00000030304	MUSK	CMS9|FADS	muscle associated receptor tyrosine kinase	protein-coding
2265	chr16	34022511	34022818	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-60161	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
2129	chr15	93374857	93374903	+	0	NA	Intergenic	Intergenic	36166	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
723	chr10	99608860	99609125	+	0	NA	intron (NR_108035, intron 1 of 2)	intron (NR_108035, intron 1 of 2)	563	NR_108035	100505561	Hs.351904	NR_108035	ENSG00000227356	LINC00866	-	long intergenic non-protein coding RNA 866	ncRNA
3597	chr21	10701610	10701753	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	289262	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
1040	chr11	123178993	123179145	+	0	NA	Intergenic	Intergenic	73151	NR_039714	100616319		NR_039714	ENSG00000265357	MIR4493	-	microRNA 4493	ncRNA
1755	chr14	61612769	61612929	+	0	NA	Intergenic	Intergenic	135681	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
488	chr1	224505426	224505539	+	0	NA	exon (NM_001243147, exon 4 of 22)	exon (NM_001243147, exon 4 of 22)	12409	NM_001243147	4931	Hs.497867	NM_002533	ENSG00000143748	NVL	NVL2	nuclear VCP-like	protein-coding
1138	chr12	31902369	31902645	+	0	NA	Intergenic	Intergenic	-20399	NM_001278412	196394	Hs.585084	NM_001113402	ENSG00000151743	AMN1	-	antagonist of mitotic exit network 1 homolog	protein-coding
1012	chr11	114883449	114883665	+	0	NA	Intergenic	Intergenic	-320739	NR_135108	105369509	Hs.736064	NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
5766	chr8	109772724	109772945	+	0	NA	intron (NR_136411, intron 1 of 3)	intron (NR_136411, intron 1 of 3)	27010	NM_153015	157753	Hs.99439	NM_153015	ENSG00000164841	TMEM74	NET36	transmembrane protein 74	protein-coding
2182	chr16	16653393	16653448	+	0	NA	Intergenic	Intergenic	180318	NM_001282507	101059938	Hs.634612	NM_001282507	ENSG00000214967	NPIPA7	-	nuclear pore complex interacting protein family member A7	protein-coding
1032	chr11	118493920	118494139	+	0	NA	intron (NM_001144758, intron 4 of 22)	intron (NM_001144758, intron 4 of 22)	15723	NM_001144758	23187	Hs.504062	NM_015157	ENSG00000019144	PHLDB1	LL5A	pleckstrin homology like domain family B member 1	protein-coding
6328	chrX	129984850	129985116	+	0	NA	intron (NM_006375, intron 2 of 14)	intron (NM_006375, intron 2 of 14)	48373	NR_135655	105373338	Hs.642023	NR_135655		LOC105373338	-	uncharacterized LOC105373338	ncRNA
5988	chr9	92930137	92930315	+	0	NA	Intergenic	L1MD2|LINE|L1	-126445	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
4071	chr3	193923678	193923796	+	0	NA	intron (NR_125403, intron 1 of 2)	intron (NR_125403, intron 1 of 2)	359	NR_125404	100505920	Hs.436654	NR_125403	ENSG00000225742	LINC02036	-	long intergenic non-protein coding RNA 2036	ncRNA
152	chr1	59971517	59971637	+	0	NA	intron (NM_001244714, intron 4 of 13)	intron (NM_001244714, intron 4 of 13)	-9724	NM_001278224	55277	Hs.444301	NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
342	chr1	168942591	168942754	+	0	NA	intron (NR_104091, intron 3 of 4)	MIRb|SINE|MIR	113571	NR_104091	101978719	Hs.517849	NR_104091	ENSG00000203601	LINC00970	-	long intergenic non-protein coding RNA 970	ncRNA
2931	chr2	8341750	8342005	+	0	NA	intron (NR_034135, intron 7 of 8)	intron (NR_034135, intron 7 of 8)	126672	NR_034135	339789	Hs.565619	NM_207358	ENSG00000236790	LINC00299	C2orf46|NCRNA00299	long intergenic non-protein coding RNA 299	ncRNA
3855	chr3	55278158	55278347	+	0	NA	Intergenic	Intergenic	237174	NM_001256105	7474	Hs.643085	NM_003392	ENSG00000114251	WNT5A	hWNT5A	Wnt family member 5A	protein-coding
862	chr11	51569274	51569435	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	54072	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
1419	chr12	130797083	130797296	+	0	NA	Intergenic	Intergenic	-25244	NM_004764	9271	Hs.405659	NM_004764	ENSG00000125207	PIWIL1	CT80.1|HIWI|MIWI|PIWI	piwi like RNA-mediated gene silencing 1	protein-coding
4943	chr6	92369546	92369952	+	0	NA	intron (NR_104154, intron 2 of 3)	intron (NR_104154, intron 2 of 3)	30397	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA
341	chr1	168942191	168942590	+	0	NA	intron (NR_104091, intron 3 of 4)	intron (NR_104091, intron 3 of 4)	113853	NR_104091	101978719	Hs.517849	NR_104091	ENSG00000203601	LINC00970	-	long intergenic non-protein coding RNA 970	ncRNA
6232	chrUn_gl000225	133372	133622	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
3586	chr21	10085131	10085188	+	0	NA	Intergenic	(GAGTG)n|Simple_repeat|Simple_repeat	-116565	NR_038328	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
2189	chr16	19256803	19257120	+	0	NA	intron (NM_001330509, intron 7 of 7)	intron (NM_001330509, intron 7 of 7)	-40144	NM_001256720	728276	Hs.632180	NM_001256720	ENSG00000261210	CLEC19A	-	C-type lectin domain family 19 member A	protein-coding
2883	chr2	1183518	1184008	+	0	NA	intron (NM_018968, intron 8 of 16)	L1MEe|LINE|L1	-233470	NM_001206744	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
2287	chr16	48161278	48161291	+	0	NA	intron (NM_033226, intron 9 of 28)	intron (NM_033226, intron 9 of 28)	19397	NM_033226	94160	Hs.410111	NM_033226	ENSG00000140798	ABCC12	MRP9	ATP binding cassette subfamily C member 12	protein-coding
2540	chr17	79368795	79368946	+	0	NA	Intergenic	CpG	-4651	NM_001291324	57597	Hs.514580	NM_024696	ENSG00000266074	BAHCC1	BAHD2	BAH domain and coiled-coil containing 1	protein-coding
5830	chr9	1495730	1495763	+	0	NA	Intergenic	Intergenic	445126	NM_181872	10655	Hs.59506	NM_006557	ENSG00000173253	DMRT2	-	doublesex and mab-3 related transcription factor 2	protein-coding
2284	chr16	46455118	46455384	+	0	NA	Intergenic	HSATII|Satellite|Satellite	147758	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
3793	chr22	36232587	36232692	+	0	NA	intron (NM_001082578, intron 2 of 13)	intron (NM_001082578, intron 2 of 13)	3991	NM_001082577	23543	Hs.282998	NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding protein, fox-1 homolog 2	protein-coding
64	chr1	31329507	31329834	+	0	NA	Intergenic	MIR|SINE|MIR	51810	NM_014654	9672	Hs.158287	NM_014654	ENSG00000162512	SDC3	SDCN|SYND3	syndecan 3	protein-coding
4085	chr4	8012395	8012653	+	0	NA	intron (NM_001130086, intron 11 of 17)	intron (NM_001130086, intron 11 of 17)	-5416	NR_029511	407052		NR_029511	ENSG00000207807	MIR95	MIRN95|hsa-mir-95|miR-95	microRNA 95	ncRNA
5590	chr8	29705846	29705980	+	0	NA	Intergenic	Intergenic	-19893	NR_125817	101929470	Hs.204721	NR_125817	ENSG00000248964	LOC101929470	-	uncharacterized LOC101929470	ncRNA
5850	chr9	8086252	8086404	+	0	NA	Intergenic	Intergenic	-286522	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
5124	chr7	7901362	7901362	+	0	NA	intron (NM_001302348, intron 3 of 3)	intron (NM_001302348, intron 3 of 3)	-107012	NM_138426	113263	Hs.131673	NM_138426	ENSG00000106415	GLCCI1	FAM117C|GCTR|GIG18|TSSN1	glucocorticoid induced 1	protein-coding
45	chr1	16693482	16693612	+	0	NA	promoter-TSS (NM_001114600)	promoter-TSS (NM_001114600)	22	NR_073500	26099	Hs.252967	NM_001114600	ENSG00000055070	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
4426	chr5	14186420	14186719	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	42758	NM_007118	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
4172	chr4	49146891	49146898	+	0	NA	Intergenic	Intergenic	158235	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
6346	chrX	152371584	152371991	+	0	NA	Intergenic	Intergenic	33528	NM_032882	84968	Hs.533301	NM_032882	ENSG00000235961	PNMA6A	MA6|PNMA6|PNMA6C	paraneoplastic Ma antigen family member 6A	protein-coding
5334	chr7	80552715	80553125	+	0	NA	Intergenic	Intergenic	-4253	NM_006379	10512	Hs.269109	NM_006379	ENSG00000075223	SEMA3C	SEMAE|SemE	semaphorin 3C	protein-coding
4824	chr6	52362668	52362776	+	0	NA	3' UTR (NM_012288, exon 11 of 11)	3' UTR (NM_012288, exon 11 of 11)	76917	NM_001172420	114327	Hs.403171	NM_018100	ENSG00000096093	EFHC1	EJM1|dJ304B14.2	EF-hand domain containing 1	protein-coding
1173	chr12	34853867	34853949	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	678692	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
4656	chr6	10582898	10583028	+	0	NA	intron (NM_001491, intron 1 of 2)	intron (NM_001491, intron 1 of 2)	-3030	NM_145655	2651	Hs.519884	NM_001491	ENSG00000111846	GCNT2	CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)	protein-coding
309	chr1	149034597	149034637	+	0	NA	intron (NR_104217, intron 2 of 17).2	HSATII|Satellite|Satellite	75108	NR_104217	101929780	Hs.534675	NR_104217	ENSG00000272150	NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family member 25, pseudogene	pseudo
1963	chr14	99099896	99100024	+	0	NA	Intergenic	Intergenic	-77990	NM_182560	283598	Hs.448754	NM_182560	ENSG00000176605	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
2085	chr15	70818873	70818903	+	0	NA	Intergenic	Intergenic	60057	NR_135691	101929151	Hs.434703	NR_135691	ENSG00000280639	LOC101929151	-	uncharacterized LOC101929151	ncRNA
1733	chr14	54810941	54811086	+	0	NA	Intergenic	Intergenic	-52573	NM_001330173	1033	Hs.84113	NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
5028	chr6	124288751	124289214	+	0	NA	intron (NM_153355, intron 1 of 5)	intron (NM_153355, intron 1 of 5)	163991	NM_001040214	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding
2113	chr15	77766939	77767427	+	0	NA	intron (NM_018200, intron 7 of 10)	intron (NM_018200, intron 7 of 10)	-50754	NR_135692	101929457	Hs.637111	NR_135692	ENSG00000259362	LOC101929457	-	uncharacterized LOC101929457	ncRNA
2153	chr16	1940645	1940924	+	0	NA	Intergenic	Intergenic	-6552	NR_033914	64735	Hs.662737	NR_033914	ENSG00000281219	LINC00254	C16orf32|NCRNA00254	long intergenic non-protein coding RNA 254	ncRNA
3383	chr2	217672653	217672823	+	0	NA	Intergenic	Intergenic	52044	NM_003284	7141	Hs.3017	NM_003284	ENSG00000118245	TNP1	TP1	transition protein 1	protein-coding
824	chr11	21675667	21675714	+	0	NA	Intergenic	Intergenic	-539032	NM_213599	203859	Hs.154329	NM_213599	ENSG00000171714	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
6369	chrY	13457648	13458222	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1075454	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
120	chr1	48919978	48920034	+	0	NA	intron (NM_019073, intron 1 of 12)	intron (NM_019073, intron 1 of 12)	17874	NM_001286238	54558	Hs.538103	NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
2568	chr18	3720649	3720832	+	0	NA	intron (NM_001308390, intron 4 of 10)	intron (NM_001308390, intron 4 of 10)	117005	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
4747	chr6	24583938	24584206	+	0	NA	promoter-TSS (NM_001252328)	promoter-TSS (NM_001252328)	-617	NM_001252328	9856	Hs.26441	NM_014809	ENSG00000137261	KIAA0319	DYLX2|DYX2|NMIG	KIAA0319	protein-coding
1148	chr12	34833815	34833959	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	658671	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
254	chr1	116852224	116852472	+	0	NA	Intergenic	MLT1M|LTR|ERVL-MaLR	-63447	NM_000701	476	Hs.371889	NM_000701	ENSG00000163399	ATP1A1	-	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
2386	chr16	83082250	83082310	+	0	NA	intron (NM_001220489, intron 3 of 12)	intron (NM_001220489, intron 3 of 12)	-58377	NR_110937	101928417	Hs.569538	NR_110937	ENSG00000260832	LOC101928417	-	uncharacterized LOC101928417	ncRNA
2841	chr19	31296429	31296700	+	0	NA	Intergenic	Intergenic	433264	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
1321	chr12	106254842	106255115	+	0	NA	Intergenic	Intergenic	154426	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
6280	chrX	58561814	58561815	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-624747	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger, X-linked, duplicated A	protein-coding
4670	chr6	18861401	18861441	+	0	NA	Intergenic	Intergenic	289406	NR_030312	693125		NR_030312	ENSG00000207775	MIR548A1	MIRN548A1	microRNA 548a-1	ncRNA
4214	chr4	49659069	49660116	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	670933	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
2442	chr17	25267317	25267509	+	0	NA	Intergenic	Intergenic	148854	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
3945	chr3	124979915	124980040	+	0	NA	intron (NM_021964, intron 7 of 8)	MER58A|DNA|hAT-Charlie	-48368	NM_024628	84561	Hs.658514	NM_024628	ENSG00000221955	SLC12A8	CCC9	solute carrier family 12 member 8	protein-coding
1987	chr15	29500391	29500517	+	0	NA	intron (NM_015307, intron 3 of 10)	MER117|DNA|hAT-Charlie	61566	NM_138704	56160	Hs.94011	NM_138704	ENSG00000185115	NSMCE3	HCA4|LICS|MAGEG1|MAGEL3|NDNL2|NSE3	NSE3 homolog, SMC5-SMC6 complex component	protein-coding
5931	chr9	70009787	70009919	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	168962	NM_001126334	653427	Hs.714683	NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4-like 5	protein-coding
4920	chr6	90684869	90684949	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	80721	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
6496	chrY	58979295	58979548	+	0	NA	Intergenic	(CACTC)n|Simple_repeat|Simple_repeat	-120982	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
4911	chr6	84604827	84605046	+	0	NA	intron (NM_016230, intron 3 of 15)	AluSz6|SINE|Alu	35566	NM_016230	51167	Hs.5741	NM_016230	ENSG00000065615	CYB5R4	NCB5OR|cb5/cb5R|dJ676J13.1	cytochrome b5 reductase 4	protein-coding
2602	chr18	21574146	21574259	+	0	NA	TTS (NR_110796)	TTS (NR_110796)	1465	NM_153211	125488	Hs.128576	NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
3570	chr20	43357688	43357692	+	0	NA	intron (NR_132377, intron 3 of 4)	LTR33A_|LTR|ERVL	14205	NM_001323369	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
851	chr11	47133448	47134046	+	0	NA	intron (NM_001003678, intron 3 of 8)	L2a|LINE|L2	64929	NM_001242832	84364	Hs.436204	NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
399	chr1	202934225	202934622	+	0	NA	intron (NM_016243, intron 5 of 8)	intron (NM_016243, intron 5 of 8)	1981	NM_016243	51706	Hs.334832	NM_016243	ENSG00000159348	CYB5R1	B5R.1|B5R1|B5R2|NQO3A2|humb5R2	cytochrome b5 reductase 1	protein-coding
2296	chr16	51768560	51768785	+	0	NA	Intergenic	Intergenic	-27758	NR_110916	101927364	Hs.133120	NR_110916	ENSG00000260057	LINC01571	-	long intergenic non-protein coding RNA 1571	ncRNA
4964	chr6	102111121	102111386	+	0	NA	intron (NM_001166247, intron 3 of 16)	intron (NM_001166247, intron 3 of 16)	264392	NM_021956	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding
1811	chr14	70162643	70162811	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	-71077	NM_006925	6430	Hs.632326	NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
436	chr1	209010902	209011258	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-487721	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
5427	chr7	126210146	126210251	+	0	NA	intron (NM_001127323, intron 8 of 10)	intron (NM_001127323, intron 8 of 10)	488040	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
4412	chr5	7209802	7209809	+	0	NA	Intergenic	Intergenic	59662	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
6424	chrY	13826208	13826216	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	707177	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5114	chr7	3308173	3308185	+	0	NA	Intergenic	Intergenic	-32901	NM_152744	221935	Hs.653013	NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
213	chr1	87667063	87667246	+	0	NA	Intergenic	L2c|LINE|L2	-11198	NM_001290053	101927844	Hs.694591	NM_001290053		LOC101927844	-	uncharacterized LOC101927844	protein-coding
94	chr1	40167869	40168038	+	0	NA	Intergenic	MIRb|SINE|MIR	-10571	NM_016257	51440	Hs.743975	NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
5597	chr8	41342883	41342922	+	0	NA	Intergenic	Intergenic	-5179	NM_016099	51125	Hs.654773	NM_016099	ENSG00000147533	GOLGA7	GCP16|GOLGA3AP1|GOLGA7A|HSPC041	golgin A7	protein-coding
4818	chr6	51263526	51263651	+	0	NA	Intergenic	Intergenic	-223080	NR_125840	101927082	Hs.730296	NR_125840		LOC101927082	-	uncharacterized LOC101927082	ncRNA
1450	chr13	32603185	32603336	+	0	NA	intron (NR_103839, intron 1 of 3)	intron (NR_103839, intron 1 of 3)	-2177	NM_023037	10129	Hs.507669	NM_023037	ENSG00000073910	FRY	13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1	FRY microtubule binding protein	protein-coding
3011	chr2	50160738	50160910	+	0	NA	intron (NM_001330088, intron 17 of 17)	MIRc|SINE|MIR	40517	NM_001320156	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
568	chr10	38872003	38872013	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-117719	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
2668	chr18	36685532	36685585	+	0	NA	Intergenic	Intergenic	516581	NR_030628	100126323		NR_030628	ENSG00000283615	MIR924	MIRN924|hsa-mir-924	microRNA 924	ncRNA
2863	chr19	49419089	49419403	+	0	NA	intron (NM_006184, intron 7 of 12)	L1MB2|LINE|L1	2902	NR_046633	100874085	Hs.569933	NR_046633	ENSG00000235191	NUCB1-AS1	-	NUCB1 antisense RNA 1	ncRNA
3098	chr2	89850234	89850662	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	738564	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
3250	chr2	145977784	145978114	+	0	NA	Intergenic	Intergenic	552415	NR_033870	401014	Hs.742290	NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
2411	chr17	6066994	6067366	+	0	NA	Intergenic	MIRb|SINE|MIR	93246	NM_015253	23302	Hs.370166	NM_015253	ENSG00000179314	WSCD1	-	WSC domain containing 1	protein-coding
6474	chrY	13869544	13869615	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	663810	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3905	chr3	108476317	108476632	+	0	NA	promoter-TSS (NM_032579)	promoter-TSS (NM_032579)	-344	NM_032579	84666	Hs.307047	NM_032579	ENSG00000163515	RETNLB	FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2	resistin like beta	protein-coding
4334	chr4	141284561	141284740	+	0	NA	intron (NM_001153585, intron 1 of 3)	Tigger2|DNA|TcMar-Tigger	9896	NR_033939	100129858	Hs.660477	NR_033939	ENSG00000196951	SCOC-AS1	-	SCOC antisense RNA 1	ncRNA
1129	chr12	18318419	18318546	+	0	NA	Intergenic	Intergenic	-75355	NM_024730	79785	Hs.732831	NM_024730	ENSG00000111404	RERGL	-	RERG like	protein-coding
5086	chr6	160476723	160476872	+	0	NA	intron (NM_000876, intron 19 of 47)	MIRb|SINE|MIR	-37317	NR_003288	729603	Hs.674810	NR_003288	ENSG00000213073	LOC729603	-	calcineurin like EF-hand protein 1 pseudogene	pseudo
1143	chr12	32536180	32536227	+	0	NA	Intergenic	Intergenic	-102703	NM_001330374	121512	Hs.117835	NM_139241	ENSG00000139132	FGD4	CMT4H|FRABP|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding
2848	chr19	44031900	44032055	+	0	NA	promoter-TSS (NM_001320867)	promoter-TSS (NM_001320867)	-569	NM_001320867	23474	Hs.7486	NM_014297	ENSG00000105755	ETHE1	HSCO|YF13H12	ETHE1, persulfide dioxygenase	protein-coding
386	chr1	187846363	187846508	+	0	NA	Intergenic	Intergenic	433675	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA
1961	chr14	99099684	99099739	+	0	NA	Intergenic	Intergenic	-78239	NM_182560	283598	Hs.448754	NM_182560	ENSG00000176605	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
6256	chrX	11498313	11498516	+	0	NA	intron (NR_109776, intron 1 of 14)	L1MB8|LINE|L1	-52509	NM_001287242	395	Hs.435291	NM_001174	ENSG00000047648	ARHGAP6	RHOGAP6|RHOGAPX-1	Rho GTPase activating protein 6	protein-coding
1457	chr13	37121223	37121481	+	0	NA	Intergenic	Intergenic	114943	NM_003914	8900	Hs.417050	NM_003914	ENSG00000133101	CCNA1	CT146	cyclin A1	protein-coding
200	chr1	85690794	85691110	+	0	NA	Intergenic	Intergenic	-24224	NM_032184	84144	Hs.533853	NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
1261	chr12	97622369	97622642	+	0	NA	Intergenic	L2b|LINE|L2	-236294	NR_024037	196475	Hs.652568	NR_024037	ENSG00000255794	RMST	LINC00054|NCRMS|NCRNA00054	rhabdomyosarcoma 2 associated transcript (non-protein coding)	ncRNA
5155	chr7	26458881	26458952	+	0	NA	intron (NR_015364, intron 1 of 4)	intron (NR_015364, intron 1 of 4)	15808	NR_015364	441204	Hs.587432	NR_015364		LOC441204	-	uncharacterized LOC441204	ncRNA
1352	chr12	116561238	116561471	+	0	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	25105	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
4467	chr5	51433117	51433272	+	0	NA	Intergenic	Intergenic	-650580	NM_015946	53918	Hs.644352	NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota homolog (Drosophila)	protein-coding
1621	chr13	113558119	113558395	+	0	NA	Intergenic	Intergenic	64695	NR_034002	100289410	Hs.667436	NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
2970	chr2	33283877	33284640	+	0	NA	intron (NM_206943, intron 3 of 33)	intron (NM_206943, intron 3 of 33)	-75406	NM_001166264	4052	Hs.619315	NM_000627	ENSG00000049323	LTBP1	-	latent transforming growth factor beta binding protein 1	protein-coding
161	chr1	62850415	62850442	+	0	NA	Intergenic	MIRb|SINE|MIR	-51547	NM_001017415	7398	Hs.35086	NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
5945	chr9	72611776	72611981	+	0	NA	Intergenic	Intergenic	-46619	NM_001347990	256691	Hs.547172	NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding
5145	chr7	14429769	14429838	+	0	NA	intron (NM_145695, intron 20 of 23)	intron (NM_145695, intron 20 of 23)	-398753	NM_001163148	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding
109	chr1	42806950	42806997	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-5425	NM_001198850	22887	Hs.26023	NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
6168	chrUn_gl000216	30947	31048	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5232	chr7	61080623	61080658	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1683794	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
4464	chr5	51306340	51306527	+	0	NA	Intergenic	Intergenic	-627267	NR_046243	642366	Hs.544139	NR_046243		LOC642366	-	uncharacterized LOC642366	ncRNA
2318	chr16	52586455	52586490	+	0	NA	intron (NR_033920, intron 3 of 3)	intron (NR_033920, intron 3 of 3)	-4758	NM_001146188	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
2651	chr18	34274245	34274273	+	0	NA	intron (NM_025135, intron 14 of 24)	intron (NM_025135, intron 14 of 24)	-30878	NR_132982	105372071		NR_132982		LOC105372071	-	uncharacterized LOC105372071	ncRNA
2764	chr18	56764174	56764288	+	0	NA	Intergenic	Intergenic	-42858	NM_033280	90701	Hs.45107	NM_033280	ENSG00000166562	SEC11C	SEC11L3|SPC21|SPCS4C	SEC11 homolog C, signal peptidase complex subunit	protein-coding
4526	chr5	123991846	123992162	+	0	NA	intron (NM_020747, intron 2 of 8)	intron (NM_020747, intron 2 of 8)	88801	NM_020747	57507	Hs.266616	NM_020747	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
6437	chrY	13843608	13843672	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	689749	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
2797	chr18	75898676	75898887	+	0	NA	Intergenic	Intergenic	-193098	NR_104127	101927715	Hs.385670	NR_104127		LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
5869	chr9	10014704	10014851	+	0	NA	intron (NM_002839, intron 4 of 45)	intron (NM_002839, intron 4 of 45)	215385	NR_135135	105375972	Hs.738242	NR_135135	ENSG00000230920	LOC105375972	-	uncharacterized LOC105375972	ncRNA
5177	chr7	30183137	30183289	+	0	NA	intron (NM_152793, intron 1 of 2)	intron (NM_152793, intron 1 of 2)	8661	NM_152793	222166	Hs.200100	NM_152793	ENSG00000180354	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog	protein-coding
1556	chr13	101136243	101136626	+	0	NA	intron (NM_001178004, intron 21 of 22)	intron (NM_001178004, intron 21 of 22)	-3165	NR_047686	100885777	Hs.662554	NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
4800	chr6	43894876	43895351	+	0	NA	intron (NR_024478, intron 1 of 1)	intron (NR_024478, intron 1 of 1)	36348	NR_024478	100132354	Hs.376232	NR_024478		LINC01512	HI-LNC77	long intergenic non-protein coding RNA 1512	ncRNA
3682	chr21	36739977	36740028	+	0	NA	Intergenic	Intergenic	213060	NR_073512	100506403	Hs.536609	NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
5051	chr6	141873653	141873799	+	0	NA	Intergenic	L1MEc|LINE|L1	536210	NM_002511	4829	Hs.552106	NM_002511	ENSG00000135577	NMBR	BB1|BB1R|NMB-R	neuromedin B receptor	protein-coding
4593	chr5	152502370	152502704	+	0	NA	Intergenic	Intergenic	-150628	NR_109877	101927134	Hs.531423	NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA
5049	chr6	141873452	141873472	+	0	NA	Intergenic	Intergenic	536474	NM_002511	4829	Hs.552106	NM_002511	ENSG00000135577	NMBR	BB1|BB1R|NMB-R	neuromedin B receptor	protein-coding
1766	chr14	61855337	61855500	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	67257	NM_006255	5583	Hs.333907	NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta	protein kinase C eta	protein-coding
3378	chr2	213000625	213000924	+	0	NA	intron (NM_005235, intron 1 of 27)	intron (NM_005235, intron 1 of 27)	290310	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
4034	chr3	177520076	177520368	+	0	NA	Intergenic	Intergenic	-14431	NR_110826	102724550	Hs.570526	NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
3982	chr3	155222781	155222881	+	0	NA	intron (NM_001130961, intron 11 of 23)	MARNA|DNA|TcMar-Mariner	171274	NM_001130961	23007	Hs.567423	NM_014996	ENSG00000114805	PLCH1	PLCL3	phospholipase C eta 1	protein-coding
4454	chr5	49405640	49405968	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	331430	NM_198449	133418	Hs.561411	NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
5563	chr8	22419070	22419508	+	0	NA	intron (NM_005775, intron 6 of 20)	intron (NM_005775, intron 6 of 20)	-3890	NM_001018003	10174	Hs.528572	NM_005775	ENSG00000120896	SORBS3	SCAM-1|SCAM1|SH3D4	sorbin and SH3 domain containing 3	protein-coding
5282	chr7	66878504	66878709	+	0	NA	Intergenic	Intergenic	77643	NR_108104	101929736	Hs.634050	NR_108104	ENSG00000235475	LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
4787	chr6	38078097	38078194	+	0	NA	intron (NM_021943, intron 4 of 5)	intron (NM_021943, intron 4 of 5)	290838	NM_021943	60685	Hs.36959	NM_021943	ENSG00000156639	ZFAND3	TEX27	zinc finger AN1-type containing 3	protein-coding
3153	chr2	90375207	90375886	+	0	NA	Intergenic	Intergenic	1263662	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
5841	chr9	4500339	4500540	+	0	NA	intron (NM_004170, intron 1 of 11)	AluSx1|SINE|Alu	10012	NM_004170	6505	Hs.444915	NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18	solute carrier family 1 member 1	protein-coding
911	chr11	51593486	51593642	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	78282	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
2072	chr15	69761174	69761632	+	0	NA	Intergenic	Intergenic	16244	NM_001003	6176	Hs.356502	NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
5647	chr8	62658855	62659948	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	32054	NR_039680	100616484		NR_039680	ENSG00000264408	MIR4470	mir-4470	microRNA 4470	ncRNA
6253	chrX	9078824	9079003	+	0	NA	Intergenic	L1ME3|LINE|L1	-76745	NM_205849	171483	Hs.733351	NM_173696	ENSG00000177138	FAM9B	TEX39B	family with sequence similarity 9 member B	protein-coding
3121	chr2	89868915	89868916	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	757031	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
3507	chr20	22444365	22444544	+	0	NA	Intergenic	Intergenic	-43173	NR_027089	284788	Hs.651993	NR_027089	ENSG00000204684	LOC284788	-	uncharacterized LOC284788	ncRNA
5733	chr8	100110167	100110300	+	0	NA	intron (NM_152564, intron 4 of 61)	L1M4|LINE|L1	84739	NR_047582	157680	Hs.191540	NM_015243	ENSG00000132549	VPS13B	CHS1|COH1	vacuolar protein sorting 13 homolog B	protein-coding
3427	chr2	234898099	234898197	+	0	NA	intron (NM_024080, intron 21 of 25)	intron (NM_024080, intron 21 of 25)	-61198	NM_006944	6694	Hs.444488	NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
2624	chr18	31383021	31383243	+	0	NA	Intergenic	Intergenic	224591	NM_030632	80816	Hs.464876	NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	additional sex combs like 3, transcriptional regulator	protein-coding
4079	chr3	197098478	197098811	+	0	NA	Intergenic	Intergenic	-72501	NM_001290983	1739	Hs.292549	NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs large MAGUK scaffold protein 1	protein-coding
5805	chr8	134966984	134967181	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	68343	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
2965	chr2	27712476	27712775	+	0	NA	promoter-TSS (NM_015662)	promoter-TSS (NM_015662)	53	NM_015662	26160	Hs.127401	NM_015662	ENSG00000138002	IFT172	BBS20|NPHP17|RP71|SLB|SRTD10|osm-1|wim	intraflagellar transport 172	protein-coding
1157	chr12	34841746	34842045	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	666679	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
1470	chr13	40342334	40342553	+	0	NA	intron (NM_001145079, intron 18 of 18)	intron (NM_001145079, intron 18 of 18)	-104171	NR_036190	100422940		NR_036190	ENSG00000264171	MIR4305	-	microRNA 4305	ncRNA
5790	chr8	125057214	125057521	+	0	NA	TTS (NR_103547)	TTS (NR_103547)	-4344	NR_040044	439941	Hs.683919	NM_001038706	ENSG00000181171	FER1L6-AS1	C8orf54	FER1L6 antisense RNA 1	ncRNA
5330	chr7	80260033	80260294	+	0	NA	intron (NM_001289911, intron 1 of 11)	intron (NM_001289911, intron 1 of 11)	-7669	NM_001001548	948	Hs.120949	NM_000072	ENSG00000135218	CD36	BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3	CD36 molecule	protein-coding
4907	chr6	83402741	83403183	+	0	NA	Intergenic	Intergenic	329001	NM_001166392	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
5058	chr6	143834349	143834762	+	0	NA	Intergenic	L2c|LINE|L2	-1535	NM_032020	2519	Hs.17680	NM_032020	ENSG00000001036	FUCA2	dJ20N2.5	fucosidase, alpha-L- 2, plasma	protein-coding
4835	chr6	53792272	53792290	+	0	NA	Intergenic	Intergenic	-2499	NR_125842	101927189	Hs.453592	NR_125842	ENSG00000236740	LOC101927189	-	uncharacterized LOC101927189	ncRNA
6285	chrX	58580599	58581979	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-644222	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger, X-linked, duplicated A	protein-coding
2100	chr15	74515995	74516232	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-12517	NM_025055	80125	Hs.383206	NM_025055	ENSG00000140481	CCDC33	CT61|HP11097	coiled-coil domain containing 33	protein-coding
1006	chr11	113421272	113421420	+	0	NA	Intergenic	Intergenic	-75345	NM_000795	1813	Hs.73893	NM_000795	ENSG00000149295	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
5773	chr8	109960850	109960999	+	0	NA	Intergenic	L2b|LINE|L2	-138729	NM_003301	7201	Hs.3022	NM_003301	ENSG00000174417	TRHR	TRH-R	thyrotropin releasing hormone receptor	protein-coding
3813	chr22	47080764	47080877	+	0	NA	3' UTR (NM_022766, exon 13 of 13)	3' UTR (NM_022766, exon 13 of 13)	53332	NM_022766	64781	Hs.200668	NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
5568	chr8	25856349	25856471	+	0	NA	intron (NM_022659, intron 6 of 15)	intron (NM_022659, intron 6 of 15)	46230	NM_022659	64641	Hs.491292	NM_022659	ENSG00000221818	EBF2	COE2|EBF-2|O/E-3|OE-3	early B-cell factor 2	protein-coding
4531	chr5	124744862	124745091	+	0	NA	Intergenic	Intergenic	-83978	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
996	chr11	112274779	112275256	+	0	NA	Intergenic	LTR16A|LTR|ERVL	-77938	NR_120559	101928823	Hs.126118	NR_120559	ENSG00000254968	LOC101928823	-	uncharacterized LOC101928823	ncRNA
3005	chr2	46484585	46484659	+	0	NA	Intergenic	Intergenic	-39919	NM_001430	2034	Hs.468410	NM_001430	ENSG00000116016	EPAS1	ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73	endothelial PAS domain protein 1	protein-coding
4596	chr5	153458112	153458201	+	0	NA	Intergenic	MIRb|SINE|MIR	39637	NM_001135037	4238	Hs.432818	NM_005927	ENSG00000037749	MFAP3	-	microfibrillar associated protein 3	protein-coding
1840	chr14	75877277	75877412	+	0	NA	Intergenic	Intergenic	-17165	NM_001135047	122953	Hs.196482	NM_130469	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
3656	chr21	10856785	10856804	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	134149	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2069	chr15	66125377	66125602	+	0	NA	Intergenic	Intergenic	-36308	NM_001206836	8766	Hs.321541	NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
956	chr11	74362254	74362396	+	0	NA	Intergenic	MIR3|SINE|MIR	58675	NR_046410	10714	Hs.82502	NM_006591	ENSG00000077514	POLD3	P66|P68|PPP1R128	DNA polymerase delta 3, accessory subunit	protein-coding
3933	chr3	123670862	123671430	+	0	NA	intron (NM_022757, intron 4 of 11)	intron (NM_022757, intron 4 of 11)	9109	NM_022757	64770	Hs.645028	NM_022757	ENSG00000175455	CCDC14	-	coiled-coil domain containing 14	protein-coding
629	chr10	42400818	42400867	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	462651	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
4915	chr6	90201904	90202139	+	0	NA	intron (NM_014942, intron 1 of 15)	intron (NM_014942, intron 1 of 15)	59124	NM_001242809	22881	Hs.702213	NM_014942	ENSG00000135299	ANKRD6	-	ankyrin repeat domain 6	protein-coding
372	chr1	182671952	182672327	+	0	NA	Intergenic	Intergenic	-30072	NM_001102450	85397	Hs.20982	NM_033345	ENSG00000135824	RGS8	-	regulator of G-protein signaling 8	protein-coding
4525	chr5	123991698	123991845	+	0	NA	intron (NM_020747, intron 2 of 8)	intron (NM_020747, intron 2 of 8)	89034	NM_020747	57507	Hs.266616	NM_020747	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
2951	chr2	11680502	11681040	+	0	NA	promoter-TSS (NR_039627)	promoter-TSS (NR_039627)	32	NR_039627	100616469		NR_039627	ENSG00000264010	MIR4429	mir-4429	microRNA 4429	ncRNA
3204	chr2	100187982	100188339	+	0	NA	intron (NM_001025108, intron 17 of 23)	intron (NM_001025108, intron 17 of 23)	-81642	NR_135650	51455	Hs.443077	NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1, DNA directed polymerase	protein-coding
4771	chr6	33313203	33313281	+	0	NA	Intergenic	Intergenic	-22449	NM_001141969	1616	Hs.336916	NM_001350	ENSG00000204209	DAXX	BING2|DAP6|EAP1	death domain associated protein	protein-coding
1284	chr12	101961940	101961960	+	0	NA	Intergenic	Intergenic	-26759	NM_001254721	4604	Hs.654589	NM_002465	ENSG00000196091	MYBPC1	LCCS4|MYBPCC|MYBPCS	myosin binding protein C, slow type	protein-coding
1330	chr12	107525289	107525715	+	0	NA	Intergenic	Intergenic	-37867	NM_004075	1407	Hs.151573	NM_004075	ENSG00000008405	CRY1	PHLL1	cryptochrome circadian clock 1	protein-coding
1661	chr14	31020533	31020693	+	0	NA	Intergenic	Intergenic	-7716	NM_001308097	55632	Hs.509008	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
3041	chr2	60860536	60860634	+	0	NA	Intergenic	Intergenic	-79952	NM_138559	53335	Hs.370549	NM_018014	ENSG00000119866	BCL11A	BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856	B-cell CLL/lymphoma 11A	protein-coding
5604	chr8	43094544	43094620	+	0	NA	Intergenic	SAR|Satellite|Satellite	-53003	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
5137	chr7	13959717	13959767	+	0	NA	intron (NM_004956, intron 9 of 13)	intron (NM_004956, intron 9 of 13)	66397	NM_001163150	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding
4935	chr6	90896613	90896690	+	0	NA	intron (NM_021813, intron 4 of 8)	intron (NM_021813, intron 4 of 8)	109976	NM_021813	60468	Hs.269764	NM_021813	ENSG00000112182	BACH2	BTBD25	BTB domain and CNC homolog 2	protein-coding
3526	chr20	29812170	29812180	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-33292	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
3772	chr22	26326795	26327029	+	0	NA	intron (NM_001318245, intron 34 of 43)	intron (NM_001318245, intron 34 of 43)	188801	NM_001318245	84700	Hs.417959	NM_032608	ENSG00000133454	MYO18B	KFS4	myosin XVIIIB	protein-coding
1160	chr12	34842082	34842298	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	666974	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
6441	chrY	13843804	13843858	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	689558	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
869	chr11	51572014	51572201	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	56825	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
5513	chr7	149630534	149630542	+	0	NA	Intergenic	Charlie20a|DNA|hAT-Charlie	-59587	NR_027040	401431	Hs.556998	NM_001008745	ENSG00000204934	ATP6V0E2-AS1	-	ATP6V0E2 antisense RNA 1	ncRNA
1592	chr13	108110070	108110548	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	73287	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
5886	chr9	28216127	28216508	+	0	NA	intron (NM_152570, intron 5 of 6)	intron (NM_152570, intron 5 of 6)	502986	NM_152570	158038	Hs.444665	NM_152570	ENSG00000174482	LINGO2	LERN3|LRRN6C	leucine rich repeat and Ig domain containing 2	protein-coding
5035	chr6	128429152	128429243	+	0	NA	intron (NM_001135648, intron 7 of 30)	intron (NM_001135648, intron 7 of 30)	80187	NR_125849	101928140	Hs.656779	NR_125849		LOC101928140	-	uncharacterized LOC101928140	ncRNA
4114	chr4	25564715	25564732	+	0	NA	intron (NR_134641, intron 1 of 3)	AluSz|SINE|Alu	6245	NR_134641	101929161	Hs.125638	NR_134641		LOC101929161	-	uncharacterized LOC101929161	ncRNA
5005	chr6	110138377	110138460	+	0	NA	intron (NM_014845, intron 22 of 22)	intron (NM_014845, intron 22 of 22)	-63999	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
5134	chr7	11384952	11384994	+	0	NA	Intergenic	Intergenic	371474	NR_033435	9678	Hs.655688	NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
2997	chr2	42477177	42477210	+	0	NA	intron (NM_001145076, intron 2 of 21)	intron (NM_001145076, intron 2 of 21)	-79822	NR_110584	102723824	Hs.639826	NR_110584		LOC102723824	-	uncharacterized LOC102723824	ncRNA
4888	chr6	80519642	80519776	+	0	NA	intron (NR_131786, intron 2 of 4)	intron (NR_131786, intron 2 of 4)	2254	NR_131786	89758	Hs.288213	NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
1697	chr14	40460659	40460781	+	0	NA	Intergenic	Intergenic	-559016	NM_203301	254170	Hs.146632	NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
3828	chr3	15355037	15355210	+	0	NA	intron (NM_001018009, intron 2 of 8)	intron (NM_001018009, intron 2 of 8)	19013	NM_004844	9467	Hs.257761	NM_004844	ENSG00000131370	SH3BP5	SAB|SH3BP-5	SH3 domain binding protein 5	protein-coding
1770	chr14	62075873	62076001	+	0	NA	intron (NR_039985, intron 1 of 2)	intron (NR_039985, intron 1 of 2)	-38566	NR_110416	101927780	Hs.254789	NR_110416	ENSG00000250548	LOC101927780	-	uncharacterized LOC101927780	ncRNA
5458	chr7	130049004	130049298	+	0	NA	intron (NM_001257158, intron 5 of 9)	intron (NM_001257158, intron 5 of 9)	28939	NM_001868	1357	Hs.2879	NM_001868	ENSG00000091704	CPA1	CPA	carboxypeptidase A1	protein-coding
4494	chr5	77313420	77313624	+	0	NA	intron (NM_003664, intron 25 of 26)	intron (NM_003664, intron 25 of 26)	59451	NR_105013	101929154	Hs.252895	NR_105012		LOC101929154	-	uncharacterized LOC101929154	ncRNA
2735	chr18	53072930	53073017	+	0	NA	intron (NM_001330604, intron 5 of 19)	GA-rich|Low_complexity|Low_complexity	-1747	NM_001306208	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
5622	chr8	43795051	43795054	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	647467	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
1209	chr12	67926589	67926928	+	0	NA	intron (NR_103861, intron 1 of 2)	intron (NR_103861, intron 1 of 2)	12896	NR_103861	100507175	Hs.505986	NR_103861	ENSG00000203585	LOC100507175	-	uncharacterized LOC100507175	ncRNA
6159	chrUn_gl000216	22077	22083	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
6275	chrX	58560401	58560626	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-623446	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger, X-linked, duplicated A	protein-coding
991	chr11	111317562	111317744	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-28742	NR_046085	100132078	Hs.672662	NR_046085	ENSG00000255428	LOC100132078	-	uncharacterized LOC100132078	ncRNA
5727	chr8	98790091	98790288	+	0	NA	intron (NM_018407, intron 1 of 6)	intron (NM_018407, intron 1 of 6)	2380	NM_018407	55353	Hs.492314	NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
4773	chr6	33332190	33332362	+	0	NA	Intergenic	L1MB5|LINE|L1	-27037	NM_002263	3833	Hs.436912	NM_002263	ENSG00000237649	KIFC1	HSET|KNSL2	kinesin family member C1	protein-coding
5620	chr8	43793084	43793141	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	645527	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
3535	chr20	29817890	29817899	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-27573	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
931	chr11	70759710	70760403	+	0	NA	intron (NM_012309, intron 7 of 22)	intron (NM_012309, intron 7 of 22)	-41583	NR_037437	100500844		NR_037437	ENSG00000263744	MIR3664	mir-3664	microRNA 3664	ncRNA
2348	chr16	68789970	68790153	+	0	NA	intron (NM_004360, intron 2 of 15)	intron (NM_004360, intron 2 of 15)	13642	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
615	chr10	39128822	39128936	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	139152	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
2246	chr16	33900055	33900098	+	0	NA	Intergenic	(CATTC)n|Simple_repeat|Simple_repeat	62427	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
476	chr1	224199942	224199996	+	0	NA	intron (NR_136593, intron 2 of 4)	(GAATG)n|Satellite|Satellite	19537	NR_136593	100287497	Hs.568390	NR_136590		LOC100287497	-	septin 7 pseudogene	pseudo
4505	chr5	99853087	99853258	+	0	NA	Intergenic	L1PBa|LINE|L1	-17837	NM_198507	345757	Hs.356108	NM_198507	ENSG00000174132	FAM174A	HGS_RE408|NS5ATP6|TMEM157|UNQ1912	family with sequence similarity 174 member A	protein-coding
1198	chr12	59479925	59479935	+	0	NA	Intergenic	Intergenic	-165611	NM_153377	121227	Hs.253736	NM_153377	ENSG00000139263	LRIG3	LIG3	leucine rich repeats and immunoglobulin like domains 3	protein-coding
3319	chr2	176668588	176669044	+	0	NA	Intergenic	Intergenic	198257	NM_001305010	80856	Hs.209561	NM_030650	ENSG00000144320	LNPK	KIAA1715|LNP|LNP1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding
3755	chr22	18883628	18883638	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-1689	NR_136571	100996432	Hs.631668	NR_136571		LINC01663	-	long intergenic non-protein coding RNA 1663	ncRNA
1626	chr13	113871259	113871527	+	0	NA	intron (NM_001008895, intron 2 of 19)	intron (NM_001008895, intron 2 of 19)	7574	NM_001008895	8451	Hs.339735	NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
2219	chr16	33866755	33866763	+	0	NA	Intergenic	Intergenic	95744	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
5482	chr7	139180127	139180302	+	0	NA	Intergenic	MER91C|DNA|hAT-Tip100	-11757	NM_198508	346689	Hs.17572	NM_198508	ENSG00000188883	KLRG2	CLEC15B	killer cell lectin like receptor G2	protein-coding
2141	chr15	97859659	97859854	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	205285	NR_120324	101927286	Hs.611279	NR_120324	ENSG00000259664	LOC101927286	-	uncharacterized LOC101927286	ncRNA
6146	chrUn_gl000216	14820	14846	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5413	chr7	120954207	120954936	+	0	NA	Intergenic	Intergenic	-10850	NM_016087	51384	Hs.272375	NM_016087	ENSG00000002745	WNT16	-	Wnt family member 16	protein-coding
1077	chr11	131182281	131182333	+	0	NA	Intergenic	Intergenic	-58064	NM_001048209	50863	Hs.504352	NM_016522	ENSG00000182667	NTM	HNT|IGLON2|NTRI	neurotrimin	protein-coding
2464	chr17	34983070	34983155	+	0	NA	Intergenic	AluSx1|SINE|Alu	25087	NM_024864	79922	Hs.194864	NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
2854	chr19	46544439	46544612	+	0	NA	promoter-TSS (NM_001002923)	promoter-TSS (NM_001002923)	-251	NM_001002923	444882	Hs.531310	NM_001002923	ENSG00000204869	IGFL4	-	IGF like family member 4	protein-coding
6202	chrUn_gl000216	154231	154566	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
6178	chrUn_gl000216	58688	58889	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
6122	chrUn_gl000216	1113	1130	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
1299	chr12	104193548	104193867	+	0	NA	intron (NM_001031701, intron 4 of 13)	intron (NM_001031701, intron 4 of 13)	41268	NM_001031701	51559	Hs.48428	NM_016575	ENSG00000111696	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
1781	chr14	66307041	66307436	+	0	NA	Intergenic	MIR|SINE|MIR	369418	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
967	chr11	92601538	92601971	+	0	NA	intron (NM_001008781, intron 21 of 24)	intron (NM_001008781, intron 21 of 24)	47040	NR_135091	105369431	Hs.532389	NR_135091		LOC105369431	-	uncharacterized LOC105369431	ncRNA
5109	chr7	3096534	3097159	+	0	NA	Intergenic	Intergenic	-13267	NM_032415	84433	Hs.648101	NM_032415	ENSG00000198286	CARD11	BENTA|BIMP3|CARMA1|IMD11|PPBL	caspase recruitment domain family member 11	protein-coding
1611	chr13	112331686	112331964	+	0	NA	Intergenic	Intergenic	83469	NR_135814	105370369		NR_135814	ENSG00000215881	LOC105370369	-	uncharacterized LOC105370369	ncRNA
2157	chr16	4103385	4103485	+	0	NA	intron (NM_001116, intron 2 of 10)	intron (NM_001116, intron 2 of 10)	62751	NM_001116	115	Hs.391860	NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
322	chr1	150135269	150135505	+	0	NA	intron (NR_135098, intron 1 of 3)	intron (NR_135098, intron 1 of 3)	2461	NR_135098	105371433	Hs.599366	NR_135098		LOC105371433	-	uncharacterized LOC105371433	ncRNA
3046	chr2	61935461	61935985	+	0	NA	Intergenic	Intergenic	145555	NR_037710	84140	Hs.440466	NM_032180	ENSG00000170264	FAM161A	RP28	family with sequence similarity 161 member A	protein-coding
575	chr10	38881317	38882346	+	0	NA	Intergenic	HSATII|Satellite|Satellite	-107896	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
1835	chr14	75867265	75867511	+	0	NA	Intergenic	Intergenic	-27121	NM_001135047	122953	Hs.196482	NM_130469	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
4101	chr4	20355777	20355804	+	0	NA	intron (NM_001289136, intron 4 of 35)	intron (NM_001289136, intron 4 of 35)	-38022	NR_037876	100505893	Hs.665305	NR_037876	ENSG00000248228	SLIT2-IT1	-	SLIT2 intronic transcript 1	ncRNA
5523	chr7	154671780	154672030	+	0	NA	intron (NM_001936, intron 20 of 25)	intron (NM_001936, intron 20 of 25)	-48322	NR_024477	100132707	Hs.586358	NR_024476	ENSG00000214106	PAXIP1-AS2	PAXIP1OS	PAXIP1 antisense RNA 2	ncRNA
3850	chr3	42861846	42861886	+	0	NA	intron (NM_001296, intron 2 of 2)	AluY|SINE|Alu	10902	NM_001296	1238	Hs.146346	NM_001296	ENSG00000144648	ACKR2	CCBP2|CCR10|CCR9|CMKBR9|D6|hD6	atypical chemokine receptor 2	protein-coding
4886	chr6	80508052	80508299	+	0	NA	Intergenic	Intergenic	13788	NR_131786	89758	Hs.288213	NM_001243308		LINC01621	C6orf7	long intergenic non-protein coding RNA 1621	ncRNA
699	chr10	80288917	80289036	+	0	NA	Intergenic	Intergenic	261891	NR_073447	414243	Hs.55047	NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
5195	chr7	44228722	44229016	+	0	NA	5' UTR (NM_000162, exon 1 of 10)	5' UTR (NM_000162, exon 1 of 10)	153	NM_000162	2645	Hs.1270	NM_000162	ENSG00000106633	GCK	FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2	glucokinase	protein-coding
960	chr11	78065390	78065874	+	0	NA	intron (NM_080491, intron 1 of 9)	intron (NM_080491, intron 1 of 9)	-12706	NM_012296	9846	Hs.429434	NM_012296	ENSG00000033327	GAB2	-	GRB2 associated binding protein 2	protein-coding
818	chr11	20948134	20948234	+	0	NA	intron (NM_201551, intron 7 of 18)	intron (NM_201551, intron 7 of 18)	257087	NM_001288714	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding
1038	chr11	123178738	123178868	+	0	NA	Intergenic	Intergenic	73417	NR_039714	100616319		NR_039714	ENSG00000265357	MIR4493	-	microRNA 4493	ncRNA
2363	chr16	75120912	75121178	+	0	NA	intron (NM_032268, intron 1 of 4)	intron (NM_032268, intron 1 of 4)	29625	NM_153486	197257	Hs.380929	NM_153486	ENSG00000166816	LDHD	DLD	lactate dehydrogenase D	protein-coding
2908	chr2	4428386	4428523	+	0	NA	Intergenic	Intergenic	275358	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
3088	chr2	85941233	85941442	+	0	NA	Intergenic	Intergenic	19923	NM_006433	10578	Hs.105806	NM_006433	ENSG00000115523	GNLY	D2S69E|LAG-2|LAG2|NKG5|TLA519	granulysin	protein-coding
5910	chr9	66835672	66835717	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-87273	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
1777	chr14	65697428	65697452	+	0	NA	Intergenic	Intergenic	-8375	NR_103769	100128233	Hs.497323	NR_103769	ENSG00000255002	LOC100128233	-	uncharacterized LOC100128233	ncRNA
354	chr1	170114960	170115273	+	0	NA	promoter-TSS (NM_001136107)	promoter-TSS (NM_001136107)	-72	NM_001136107	149281	Hs.553612	NM_001136107	ENSG00000203740	METTL11B	C1orf184|HOMT1B|NTM1B	methyltransferase like 11B	protein-coding
4483	chr5	72578336	72578447	+	0	NA	Intergenic	Intergenic	-80603	NR_134291	340090	Hs.434311	NR_134291		LOC340090	-	uncharacterized LOC340090	ncRNA
3878	chr3	99585435	99585585	+	0	NA	intron (NR_031662, intron 2 of 4)	intron (NR_031662, intron 2 of 4)	9537	NM_014890	11259	Hs.104672	NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
5291	chr7	68813969	68814169	+	0	NA	Intergenic	Intergenic	248412	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
1064	chr11	127931675	127931752	+	0	NA	Intergenic	Intergenic	460492	NM_005238	2113	Hs.369438	NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
4758	chr6	24721799	24721938	+	0	NA	Intergenic	CpG	-2465	NM_030939	81688	Hs.744857	NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
4225	chr4	67138817	67139175	+	0	NA	Intergenic	MER129|LTR?|LTR?	-3546	NR_031673	100302177		NR_031673	ENSG00000221563	MIR1269A	MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a	microRNA 1269a	ncRNA
2734	chr18	51773781	51773983	+	0	NA	Intergenic	Intergenic	-21967	NM_007195	11201	Hs.438533	NM_007195	ENSG00000101751	POLI	RAD30B|RAD3OB	DNA polymerase iota	protein-coding
1217	chr12	68744103	68744499	+	0	NA	Intergenic	Intergenic	-18140	NM_020128	56890	Hs.655702	NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
3240	chr2	133339933	133340160	+	0	NA	intron (NM_001508, intron 1 of 1)	intron (NM_001508, intron 1 of 1)	87897	NM_144586	116372	Hs.432395	NM_144586	ENSG00000150551	LYPD1	LYPDC1|PHTS	LY6/PLAUR domain containing 1	protein-coding
6124	chrUn_gl000216	1168	2696	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
3288	chr2	161329340	161329377	+	0	NA	intron (NM_002897, intron 1 of 13)	intron (NM_002897, intron 1 of 13)	20960	NM_016836	5937	Hs.470412	NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
2750	chr18	55523533	55524127	+	0	NA	Intergenic	Intergenic	-53503	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
4165	chr4	49140669	49141279	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	152315	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
2527	chr17	72008313	72008569	+	0	NA	Intergenic	Intergenic	-183765	NR_027146	283982	Hs.464079	NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
1850	chr14	77506776	77507047	+	0	NA	promoter-TSS (NR_110554)	promoter-TSS (NR_110554)	-481	NR_110554	283575	Hs.651736	NR_110554	ENSG00000246548	LOC283575	-	uncharacterized LOC283575	ncRNA
1346	chr12	116134744	116135104	+	0	NA	Intergenic	Intergenic	451535	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
1964	chr14	99100025	99100204	+	0	NA	Intergenic	Intergenic	-77836	NM_182560	283598	Hs.448754	NM_182560	ENSG00000176605	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
3396	chr2	221814163	221814201	+	0	NA	Intergenic	Intergenic	622896	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
4768	chr6	33313004	33313014	+	0	NA	Intergenic	Intergenic	-22216	NM_001141969	1616	Hs.336916	NM_001350	ENSG00000204209	DAXX	BING2|DAP6|EAP1	death domain associated protein	protein-coding
2818	chr19	7179909	7180061	+	0	NA	intron (NM_001079817, intron 3 of 20)	MLT1H2|LTR|ERVL-MaLR	110514	NM_001044388	79230	Hs.591380	NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
2424	chr17	22255664	22262991	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	236890	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
1004	chr11	113420655	113420725	+	0	NA	Intergenic	Intergenic	-74689	NM_000795	1813	Hs.73893	NM_000795	ENSG00000149295	DRD2	D2DR|D2R	dopamine receptor D2	protein-coding
891	chr11	51584050	51585204	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	69345	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
3471	chr20	11331565	11331855	+	0	NA	Intergenic	Intergenic	-77679	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
2106	chr15	75339719	75339916	+	0	NA	intron (NM_001301105, intron 3 of 4)	intron (NM_001301105, intron 3 of 4)	4207	NM_001301105	60490	Hs.458922	NM_021823	ENSG00000138621	PPCDC	MDS018|PPC-DC|coaC	phosphopantothenoylcysteine decarboxylase	protein-coding
1013	chr11	114883666	114883861	+	0	NA	Intergenic	Intergenic	-320533	NR_135108	105369509	Hs.736064	NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
5688	chr8	82555608	82555976	+	0	NA	Intergenic	AluSp|SINE|Alu	42797	NM_005536	3612	Hs.656694	NM_005536	ENSG00000133731	IMPA1	IMP|IMPA	inositol monophosphatase 1	protein-coding
1693	chr14	37326563	37326790	+	0	NA	intron (NM_030631, intron 2 of 9)	intron (NM_030631, intron 2 of 9)	94920	NR_039725	100616280		NR_039725	ENSG00000266327	MIR4503	-	microRNA 4503	ncRNA
316	chr1	149035517	149035549	+	0	NA	intron (NR_104217, intron 2 of 17).2	HSATII|Satellite|Satellite	74192	NR_104217	101929780	Hs.534675	NR_104217	ENSG00000272150	NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family member 25, pseudogene	pseudo
4549	chr5	131764248	131764496	+	0	NA	intron (NR_045116, intron 2 of 3)	intron (NR_045116, intron 2 of 3)	17907	NR_045116	441108	Hs.658288	NM_001013717	ENSG00000197536	C5orf56	-	chromosome 5 open reading frame 56	ncRNA
1806	chr14	69601899	69602082	+	0	NA	intron (NM_001284206, intron 1 of 8)	Charlie1a|DNA|hAT-Charlie	17326	NM_001284207	8816	Hs.509780	NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
4013	chr3	174987936	174988070	+	0	NA	intron (NM_207015, intron 4 of 13)	intron (NM_207015, intron 4 of 13)	882	NR_046713	100874244	Hs.581176	NR_046713		NAALADL2-AS2	-	NAALADL2 antisense RNA 2	ncRNA
1738	chr14	59165035	59165070	+	0	NA	Intergenic	Intergenic	59497	NR_046095	51339	Hs.48950	NM_016651	ENSG00000165617	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3	dishevelled binding antagonist of beta catenin 1	protein-coding
2025	chr15	53951049	53951085	+	0	NA	intron (NR_102334, intron 14 of 19)	intron (NR_102334, intron 14 of 19)	100792	NM_182758	256764	Hs.122125	NM_182758	ENSG00000166415	WDR72	AI2A3	WD repeat domain 72	protein-coding
1370	chr12	117932806	117932912	+	0	NA	intron (NM_173598, intron 14 of 19)	intron (NM_173598, intron 14 of 19)	-133252	NM_001204218	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
4251	chr4	81228619	81228663	+	0	NA	Intergenic	Intergenic	-28233	NM_001206997	255119	Hs.527104	NM_152770	ENSG00000197826	C4orf22	-	chromosome 4 open reading frame 22	protein-coding
3920	chr3	114618871	114618917	+	0	NA	intron (NM_001164343, intron 3 of 11)	intron (NM_001164343, intron 3 of 11)	575	NR_121662	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
5842	chr9	7776917	7777140	+	0	NA	Intergenic	Intergenic	22778	NM_001318058	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
4809	chr6	47256190	47256330	+	0	NA	intron (NM_014452, intron 1 of 5)	intron (NM_014452, intron 1 of 5)	21423	NM_014452	27242	Hs.443577	NM_014452	ENSG00000146072	TNFRSF21	BM-018|CD358|DR6	TNF receptor superfamily member 21	protein-coding
2649	chr18	34273731	34273921	+	0	NA	intron (NM_025135, intron 14 of 24)	intron (NM_025135, intron 14 of 24)	-30445	NR_132982	105372071		NR_132982		LOC105372071	-	uncharacterized LOC105372071	ncRNA
3668	chr21	35173727	35173975	+	0	NA	intron (NM_001331012, intron 19 of 28)	AluJb|SINE|Alu	114307	NM_001697	539	Hs.409140	NM_001697	ENSG00000241837	ATP5O	ATPO|HMC08D05|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding
3804	chr22	40197601	40197729	+	0	NA	intron (NM_152512, intron 5 of 6)	intron (NM_152512, intron 5 of 6)	92129	NM_152512	150350	Hs.474869	NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
511	chr1	245970857	245971000	+	0	NA	intron (NM_001167740, intron 10 of 11)	intron (NM_001167740, intron 10 of 11)	609786	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
5483	chr7	139180303	139180405	+	0	NA	Intergenic	Intergenic	-11897	NM_198508	346689	Hs.17572	NM_198508	ENSG00000188883	KLRG2	CLEC15B	killer cell lectin like receptor G2	protein-coding
2367	chr16	77484500	77485017	+	0	NA	Intergenic	Intergenic	-15747	NM_199355	170692	Hs.188746	NM_139054	ENSG00000140873	ADAMTS18	ADAMTS21|KNO2|MMCAT	ADAM metallopeptidase with thrombospondin type 1 motif 18	protein-coding
899	chr11	51588213	51588700	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	73174	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
3259	chr2	147955471	147955498	+	0	NA	Intergenic	Intergenic	610859	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein cytoplasmic 1 pseudogene 2	pseudo
3443	chr2	236888944	236889201	+	0	NA	intron (NM_001037131, intron 13 of 17)	intron (NM_001037131, intron 13 of 17)	187580	NM_001485	2637	Hs.184945	NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
2437	chr17	25266157	25266587	+	0	NA	Intergenic	AluSz6|SINE|Alu	149895	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
3573	chr20	46772563	46772806	+	0	NA	Intergenic	Intergenic	-153823	NR_110027	101927457	Hs.445823	NR_110027		LINC01522	-	long intergenic non-protein coding RNA 1522	ncRNA
2689	chr18	42526791	42526865	+	0	NA	intron (NM_015559, intron 3 of 5)	intron (NM_015559, intron 3 of 5)	23303	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
3131	chr2	89878878	89878911	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	767010	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
3765	chr22	23534243	23534356	+	0	NA	intron (NM_021574, intron 1 of 21)	intron (NM_021574, intron 1 of 21)	11747	NM_004327	613	Hs.517461	NM_004327	ENSG00000186716	BCR	ALL|BCR1|CML|D22S11|D22S662|PHL	BCR, RhoGEF and GTPase activating protein	protein-coding
5924	chr9	69710587	69710597	+	0	NA	intron (NR_135597, intron 4 of 4).2	ALR/Alpha|Satellite|centr	47192	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
6263	chrX	18093732	18094003	+	0	NA	intron (NR_133641, intron 1 of 4)	intron (NR_133641, intron 1 of 4)	28897	NR_133641	105373144		NR_133641	ENSG00000225882	LINC01456	-	long intergenic non-protein coding RNA 1456	ncRNA
4254	chr4	81228954	81229247	+	0	NA	Intergenic	Intergenic	-27774	NM_001206997	255119	Hs.527104	NM_152770	ENSG00000197826	C4orf22	-	chromosome 4 open reading frame 22	protein-coding
5437	chr7	126418449	126418591	+	0	NA	intron (NM_001127323, intron 6 of 10)	intron (NM_001127323, intron 6 of 10)	279718	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
1979	chr14	104286325	104286437	+	0	NA	intron (NM_015316, intron 1 of 16)	intron (NM_015316, intron 1 of 16)	27546	NM_015316	23368	Hs.709297	NM_015316	ENSG00000088808	PPP1R13B	ASPP1|p53BP2-like|p85	protein phosphatase 1 regulatory subunit 13B	protein-coding
6341	chrX	149831528	149831873	+	0	NA	intron (NM_000252, intron 13 of 14)	intron (NM_000252, intron 13 of 14)	-30137	NM_001306144	8776	Hs.347187	NM_003828	ENSG00000063601	MTMR1	-	myotubularin related protein 1	protein-coding
5648	chr8	65179120	65179140	+	0	NA	intron (NR_125826, intron 1 of 4)	intron (NR_125826, intron 1 of 4)	101985	NR_125826	102724623	Hs.586375	NR_125826	ENSG00000253554	LOC102724623	-	uncharacterized LOC102724623	ncRNA
3066	chr2	68148994	68149201	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-96403	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
2485	chr17	55043821	55044001	+	0	NA	Intergenic	PABL_A-int|LTR|ERV1	-5500	NM_004645	8161	Hs.532795	NM_004645	ENSG00000121058	COIL	CLN80|p80-coilin	coilin	protein-coding
1948	chr14	96337733	96337781	+	0	NA	Intergenic	L3|LINE|CR1	-4972	NR_132399	100507043	Hs.455955	NR_038861	ENSG00000250366	TUNAR	HI-LNC78|LINC00617|TUNA	TCL1 upstream neural differentiation-associated RNA	ncRNA
795	chr11	16322198	16322403	+	0	NA	intron (NM_001145819, intron 3 of 15)	intron (NM_001145819, intron 3 of 15)	102113	NM_001145819	55553	Hs.368226	NM_017508	ENSG00000110693	SOX6	HSSOX6|SOXD	SRY-box 6	protein-coding
4402	chr5	6342485	6342508	+	0	NA	Intergenic	Intergenic	-5091	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	LINC02145	-	long intergenic non-protein coding RNA 2145	ncRNA
794	chr11	16321945	16322197	+	0	NA	intron (NM_001145819, intron 3 of 15)	intron (NM_001145819, intron 3 of 15)	102342	NM_001145819	55553	Hs.368226	NM_017508	ENSG00000110693	SOX6	HSSOX6|SOXD	SRY-box 6	protein-coding
1609	chr13	111152639	111152663	+	0	NA	intron (NM_001846, intron 40 of 47)	intron (NM_001846, intron 40 of 47)	7875	NR_046583	100874203	Hs.508716	NR_046583	ENSG00000232814	COL4A2-AS1	-	COL4A2 antisense RNA 1	ncRNA
4983	chr6	107150729	107150903	+	0	NA	Intergenic	Intergenic	-72450	NM_001318746	84816	Hs.155839	NM_032730	ENSG00000130347	RTN4IP1	NIMP|OPA10	reticulon 4 interacting protein 1	protein-coding
4853	chr6	61911910	61911968	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-372069	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
944	chr11	72084044	72084150	+	0	NA	intron (NM_030813, intron 4 of 16)	intron (NM_030813, intron 4 of 16)	61631	NM_001258393	81570	Hs.523877	NM_030813	ENSG00000162129	CLPB	ANKCLB|HSP78|MEGCANN|MGCA7|SKD3	ClpB homolog, mitochondrial AAA ATPase chaperonin	protein-coding
1780	chr14	66306876	66307040	+	0	NA	Intergenic	Intergenic	369138	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
5304	chr7	69228882	69229100	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	165086	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
1113	chr12	12162443	12162773	+	0	NA	Intergenic	AluSz|SINE|Alu	-61270	NM_138723	79370	Hs.210343	NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
5107	chr7	2197679	2197809	+	0	NA	intron (NM_001013836, intron 10 of 18)	intron (NM_001013836, intron 10 of 18)	74839	NM_003550	8379	Hs.654838	NM_003550	ENSG00000002822	MAD1L1	MAD1|PIG9|TP53I9|TXBP181	MAD1 mitotic arrest deficient like 1	protein-coding
674	chr10	70632096	70632279	+	0	NA	intron (NM_001130161, intron 1 of 4)	AluSq2|SINE|Alu	-28847	NM_024045	79009	Hs.522984	NM_024045	ENSG00000107625	DDX50	GU2|GUB|RH-II/GuB|mcdrh	DExD-box helicase 50	protein-coding
3405	chr2	224162825	224163003	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	246266	NM_080671	23704	Hs.348522	NM_080671	ENSG00000152049	KCNE4	MIRP3	potassium voltage-gated channel subfamily E regulatory subunit 4	protein-coding
4470	chr5	51787374	51787514	+	0	NA	Intergenic	Intergenic	-296330	NM_015946	53918	Hs.644352	NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota homolog (Drosophila)	protein-coding
1317	chr12	106208163	106208513	+	0	NA	Intergenic	Intergenic	107786	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
5298	chr7	69119388	69119708	+	0	NA	intron (NM_015570, intron 1 of 18)	MIR|SINE|MIR	55643	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
957	chr11	75350757	75350967	+	0	NA	intron (NM_207577, intron 1 of 2)	intron (NM_207577, intron 1 of 2)	28617	NM_207577	4135	Hs.585540	NM_033063	ENSG00000171533	MAP6	MAP6-N|MTAP6|N-STOP|STOP	microtubule associated protein 6	protein-coding
2430	chr17	25264029	25264248	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	152129	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
2596	chr18	18748023	18748035	+	0	NA	Intergenic	Intergenic	-56217	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
2943	chr2	10873138	10873322	+	0	NA	intron (NM_144583, intron 3 of 12)	intron (NM_144583, intron 3 of 12)	11455	NM_144583	245973	Hs.580464	NM_144583	ENSG00000143882	ATP6V1C2	ATP6C2|VMA5	ATPase H+ transporting V1 subunit C2	protein-coding
3996	chr3	170909802	170910077	+	0	NA	intron (NM_001161560, intron 5 of 31)	intron (NM_001161560, intron 5 of 31)	-85391	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
1503	chr13	79316906	79317043	+	0	NA	Intergenic	Intergenic	-83660	NM_024546	79596	Hs.567576	NM_024546	ENSG00000152193	RNF219	C13orf7	ring finger protein 219	protein-coding
6366	chrY	13454105	13454510	+	0	NA	Intergenic	Intergenic	1079082	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5185	chr7	30510894	30510962	+	0	NA	intron (NM_006092, intron 1 of 13)	intron (NM_006092, intron 1 of 13)	7465	NM_006092	10392	Hs.405153	NM_006092	ENSG00000106100	NOD1	CARD4|CLR7.1|NLRC1	nucleotide binding oligomerization domain containing 1	protein-coding
4543	chr5	125457084	125457328	+	0	NA	Intergenic	MIRc|SINE|MIR	-58064	NR_105042	102546228	Hs.582529	NR_105042	ENSG00000248107	LINC02039	-	long intergenic non-protein coding RNA 2039	ncRNA
5242	chr7	61743130	61743410	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1021164	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
2512	chr17	64419568	64419712	+	0	NA	intron (NM_002737, intron 2 of 16)	MamRep434|DNA|TcMar-Tigger	-6668	NR_110822	101928001	Hs.650730	NR_110822		PRKCA-AS1	-	PRKCA antisense RNA 1	ncRNA
502	chr1	234860217	234860406	+	0	NA	intron (NR_038856, intron 1 of 2)	intron (NR_038856, intron 1 of 2)	522	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
314	chr1	149035169	149035196	+	0	NA	intron (NR_104217, intron 2 of 17).2	HSATII|Satellite|Satellite	74543	NR_104217	101929780	Hs.534675	NR_104217	ENSG00000272150	NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family member 25, pseudogene	pseudo
1286	chr12	102042371	102042393	+	0	NA	intron (NM_001254723, intron 11 of 26)	intron (NM_001254723, intron 11 of 26)	-49035	NM_020244	56994	Hs.293077	NM_020244	ENSG00000111666	CHPT1	CPT|CPT1	choline phosphotransferase 1	protein-coding
1796	chr14	68758520	68758722	+	0	NA	exon (NM_133509, exon 8 of 11)	exon (NM_133509, exon 8 of 11)	336883	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
4744	chr6	24283829	24284093	+	0	NA	intron (NM_016356, intron 6 of 9)	intron (NM_016356, intron 6 of 9)	-73170	NM_181337	353219	Hs.697888	NM_181337	ENSG00000146049	KAAG1	RU2AS	kidney associated antigen 1	protein-coding
3385	chr2	221175233	221175363	+	0	NA	Intergenic	Intergenic	-404012	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	ncRNA
5339	chr7	84630034	84630281	+	0	NA	intron (NM_152754, intron 16 of 16)	intron (NM_152754, intron 16 of 16)	121090	NM_152754	223117	Hs.201340	NM_152754	ENSG00000153993	SEMA3D	Sema-Z2|coll-2	semaphorin 3D	protein-coding
6248	chrX	6067795	6067966	+	0	NA	intron (NM_001282145, intron 3 of 6)	intron (NM_001282145, intron 3 of 6)	-76519	NR_136577	105373156	Hs.21107	NR_136577		LOC105373156	-	uncharacterized LOC105373156	ncRNA
2998	chr2	42477211	42477393	+	0	NA	intron (NM_001145076, intron 2 of 21)	intron (NM_001145076, intron 2 of 21)	-79931	NR_110584	102723824	Hs.639826	NR_110584		LOC102723824	-	uncharacterized LOC102723824	ncRNA
2638	chr18	31919114	31919160	+	0	NA	Intergenic	Intergenic	-115622	NM_001198546	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
5921	chr9	67320972	67320973	+	0	NA	intron (NR_136300, intron 3 of 3)	ALR/Alpha|Satellite|centr	30521	NR_136300	102724580	Hs.494013	NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene	pseudo
355	chr1	174923612	174924149	+	0	NA	promoter-TSS (NR_121196)	promoter-TSS (NR_121196)	-482	NR_121196	101928696	Hs.666680	NR_121196	ENSG00000229531	LOC101928696	-	uncharacterized LOC101928696	ncRNA
553	chr10	38785808	38785848	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	68754	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
2058	chr15	60865273	60865430	+	0	NA	intron (NM_134260, intron 1 of 11)	intron (NM_134260, intron 1 of 11)	19356	NM_134262	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
3546	chr20	29829311	29829848	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-15888	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
1252	chr12	97396241	97396313	+	0	NA	Intergenic	Intergenic	95033	NM_001135175	121441	Hs.270084	NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
5859	chr9	8695019	8695119	+	0	NA	intron (NM_001040712, intron 1 of 29)	MLT1L|LTR|ERVL-MaLR	38877	NM_001171025	5789	Hs.446083	NM_002839	ENSG00000153707	PTPRD	HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA	protein tyrosine phosphatase, receptor type D	protein-coding
555	chr10	38804244	38804421	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	87258	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
2643	chr18	32287649	32287774	+	0	NA	intron (NM_001128175, intron 2 of 11)	intron (NM_001128175, intron 2 of 11)	-2485	NM_032978	1837	Hs.643454	NM_001390	ENSG00000134769	DTNA	D18S892E|DRP3|DTN|DTN-A|LVNC1	dystrobrevin alpha	protein-coding
2877	chr2	1128374	1128687	+	0	NA	intron (NM_018968, intron 4 of 16)	intron (NM_018968, intron 4 of 16)	-181452	NR_136151	101060391	Hs.120377	NR_136151		LOC101060391	-	uncharacterized LOC101060391	ncRNA
6508	chrY	58997118	58997376	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-103156	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
5534	chr8	5834987	5835392	+	0	NA	Intergenic	Intergenic	428880	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	ncRNA
1037	chr11	122766660	122766729	+	0	NA	intron (NM_024806, intron 2 of 8)	intron (NM_024806, intron 2 of 8)	13458	NM_199124	79864	Hs.164705	NM_024806	ENSG00000109944	C11orf63	-	chromosome 11 open reading frame 63	protein-coding
5814	chr8	140967249	140967354	+	0	NA	intron (NM_031466, intron 19 of 22)	intron (NM_031466, intron 19 of 22)	143333	NR_144431	359809	Hs.26814	NR_144431		PEG13	-	paternally expressed 13	ncRNA
5317	chr7	69897671	69897686	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	-699845	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
6463	chrY	13867932	13867972	+	0	NA	Intergenic	(GAGTG)n|Simple_repeat|Simple_repeat	665437	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4164	chr4	49139463	49140523	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	151334	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
5878	chr9	14326057	14326084	+	0	NA	intron (NM_001190738, intron 1 of 8)	intron (NM_001190738, intron 1 of 8)	-12025	NM_001190737	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
3328	chr2	183533433	183533688	+	0	NA	Intergenic	LTR18B|LTR|ERVL	-47208	NR_073365	54431	Hs.516632	NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
195	chr1	83568705	83568739	+	0	NA	Intergenic	Intergenic	-116831	NR_110633	101927498		NR_110632	ENSG00000236268	LINC01361	-	long intergenic non-protein coding RNA 1361	ncRNA
5321	chr7	76341038	76341134	+	0	NA	Intergenic	Intergenic	-84466	NM_012230	22932	Hs.488877	NM_012230	ENSG00000146707	POMZP3	POM-ZP3|POM121	POM121 and ZP3 fusion	protein-coding
2005	chr15	40384634	40384866	+	0	NA	intron (NM_001003943, intron 3 of 3)	intron (NM_001003943, intron 3 of 3)	13537	NM_001003942	90427	Hs.591104	NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
5800	chr8	134261659	134262367	+	0	NA	intron (NM_001135242, intron 10 of 15)	intron (NM_001135242, intron 10 of 15)	47534	NM_001258433	10397	Hs.372914	NM_006096	ENSG00000104419	NDRG1	CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5	N-myc downstream regulated 1	protein-coding
2828	chr19	16722133	16722154	+	0	NA	intron (NM_004831, intron 1 of 2)	intron (NM_004831, intron 1 of 2)	16872	NM_004831	9441	Hs.715040	NM_004831	ENSG00000105085	MED26	CRSP7|CRSP70	mediator complex subunit 26	protein-coding
679	chr10	76348918	76349451	+	0	NA	intron (NM_006721, intron 8 of 10)	intron (NM_006721, intron 8 of 10)	-60102	NR_120673	102723439		NR_120673		LOC102723439	-	uncharacterized LOC102723439	ncRNA
6195	chrUn_gl000216	80761	81019	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
831	chr11	22771229	22771286	+	0	NA	intron (NM_001143830, intron 6 of 7)	intron (NM_001143830, intron 6 of 7)	74938	NM_005256	2620	Hs.711297	NM_005256	ENSG00000148935	GAS2	-	growth arrest specific 2	protein-coding
5879	chr9	14326085	14326687	+	0	NA	intron (NM_001190738, intron 1 of 8)	intron (NM_001190738, intron 1 of 8)	-12341	NM_001190737	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
5013	chr6	111862649	111862770	+	0	NA	intron (NR_034109, intron 1 of 1)	intron (NR_034109, intron 1 of 1)	25854	NM_001164283	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
5507	chr7	146973901	146974019	+	0	NA	intron (NM_014141, intron 8 of 23)	intron (NM_014141, intron 8 of 23)	101253	NR_031645	100313895		NR_031645	ENSG00000221442	MIR548F4	MIR548F-4|MIRN548F4|hsa-mir-548f-4	microRNA 548f-4	ncRNA
1960	chr14	97445245	97445753	+	0	NA	Intergenic	Intergenic	35583	NR_104113	145249		NR_104113	ENSG00000225163	LINC00618	C14orf63	long intergenic non-protein coding RNA 618	ncRNA
2355	chr16	72918585	72918825	+	0	NA	intron (NM_001164766, intron 3 of 8)	intron (NM_001164766, intron 3 of 8)	163569	NM_006885	463	Hs.598297	NM_006885	ENSG00000140836	ZFHX3	ATBF1|ATBT|ZNF927	zinc finger homeobox 3	protein-coding
5762	chr8	109055264	109055449	+	0	NA	intron (NM_178565, intron 2 of 5)	intron (NM_178565, intron 2 of 5)	38811	NM_001317942	340419	Hs.444834	NM_178565	ENSG00000147655	RSPO2	CRISTIN2	R-spondin 2	protein-coding
5495	chr7	141258636	141258852	+	0	NA	intron (NM_018238, intron 2 of 15)	L1MB2|LINE|L1	7666	NM_018238	55750	Hs.743318	NM_018238	ENSG00000006530	AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
1241	chr12	93528828	93529075	+	0	NA	intron (NR_040096, intron 3 of 4)	intron (NR_040096, intron 3 of 4)	-39191	NR_120492	102724933	Hs.663947	NR_120492	ENSG00000258171	LOC102724933	-	uncharacterized LOC102724933	ncRNA
647	chr10	42799878	42799882	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	63613	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
1441	chr13	31182449	31182679	+	0	NA	intron (NM_001313893, intron 1 of 4)	intron (NM_001313893, intron 1 of 4)	9170	NM_001313893	3146	Hs.434102	NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
4753	chr6	24584929	24585143	+	0	NA	intron (NM_014809, intron 4 of 20)	MIR|SINE|MIR	-1581	NM_001252328	9856	Hs.26441	NM_014809	ENSG00000137261	KIAA0319	DYLX2|DYX2|NMIG	KIAA0319	protein-coding
1206	chr12	67436920	67437157	+	0	NA	Intergenic	Intergenic	53026	NR_120490	102724421	Hs.135774	NR_120490	ENSG00000257083	LOC102724421	-	uncharacterized LOC102724421	ncRNA
5328	chr7	79682703	79683073	+	0	NA	Intergenic	Intergenic	-81252	NM_002069	2770	Hs.134587	NM_002069	ENSG00000127955	GNAI1	Gi	G protein subunit alpha i1	protein-coding
4368	chr4	182426157	182426628	+	0	NA	Intergenic	Intergenic	-346090	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
1027	chr11	115906701	115907062	+	0	NA	Intergenic	Intergenic	-275963	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
423	chr1	206878649	206878906	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	20412	NM_004759	9261	Hs.643566	NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	mitogen-activated protein kinase-activated protein kinase 2	protein-coding
1953	chr14	96556921	96557297	+	0	NA	3' UTR (NM_001252507, exon 2 of 2)	3' UTR (NM_001252507, exon 2 of 2)	51448	NM_001282464	56967	Hs.6434	NM_020215	ENSG00000227051	C14orf132	C14orf88	chromosome 14 open reading frame 132	protein-coding
2757	chr18	55582514	55582931	+	0	NA	Intergenic	Intergenic	-112395	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
5983	chr9	92806631	92806685	+	0	NA	Intergenic	L1MB3|LINE|L1	-2877	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
4823	chr6	52362545	52362667	+	0	NA	3' UTR (NM_012288, exon 11 of 11)	3' UTR (NM_012288, exon 11 of 11)	76801	NM_001172420	114327	Hs.403171	NM_018100	ENSG00000096093	EFHC1	EJM1|dJ304B14.2	EF-hand domain containing 1	protein-coding
1222	chr12	78708199	78708836	+	0	NA	Intergenic	MSTB1|LTR|ERVL-MaLR	45009	NR_135021	105369860	Hs.156898	NR_135021	ENSG00000258220	LOC105369860	-	uncharacterized LOC105369860	ncRNA
3473	chr20	11331989	11331995	+	0	NA	Intergenic	Intergenic	-77961	NR_038972	339593	Hs.434320	NR_038972		LOC339593	-	uncharacterized LOC339593	ncRNA
5868	chr9	9684204	9684626	+	0	NA	intron (NM_002839, intron 7 of 45)	intron (NM_002839, intron 7 of 45)	-114977	NR_135135	105375972	Hs.738242	NR_135135	ENSG00000230920	LOC105375972	-	uncharacterized LOC105375972	ncRNA
174	chr1	72374448	72375012	+	0	NA	intron (NM_173808, intron 2 of 6)	intron (NM_173808, intron 2 of 6)	-72035	NR_046218	100852409	Hs.681780	NR_046218	ENSG00000228853	NEGR1-IT1	-	NEGR1 intronic transcript 1	ncRNA
1571	chr13	102528763	102528872	+	0	NA	intron (NM_001321945, intron 2 of 5)	intron (NM_001321945, intron 2 of 5)	40178	NM_004115	2259	Hs.508616	NM_004115	ENSG00000102466	FGF14	FGF-14|FHF-4|FHF4|SCA27	fibroblast growth factor 14	protein-coding
422	chr1	206878628	206878648	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	20273	NM_004759	9261	Hs.643566	NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	mitogen-activated protein kinase-activated protein kinase 2	protein-coding
905	chr11	51590274	51591438	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	75574	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
3308	chr2	173753406	173753807	+	0	NA	intron (NM_001282899, intron 1 of 27)	intron (NM_001282899, intron 1 of 27)	28840	NM_001282899	11069	Hs.470646	NM_007023	ENSG00000091428	RAPGEF4	CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496	Rap guanine nucleotide exchange factor 4	protein-coding
6400	chrY	13808654	13808800	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	724662	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3681	chr21	36739842	36739976	+	0	NA	Intergenic	Intergenic	213153	NR_073512	100506403	Hs.536609	NR_073512	ENSG00000159216	LOC100506403	-	uncharacterized LOC100506403	ncRNA
52	chr1	16886430	16886530	+	0	NA	Intergenic	Intergenic	11071	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
302	chr1	144987159	144987568	+	0	NA	intron (NM_001002810, intron 1 of 3)	L1MB3|LINE|L1	7670	NM_001002810	9659	Hs.584841	NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
1451	chr13	32619901	32619971	+	0	NA	intron (NM_023037, intron 1 of 60)	intron (NM_023037, intron 1 of 60)	-14160	NR_103839	100507099	Hs.536364	NR_103839		FRY-AS1	-	FRY antisense RNA 1	ncRNA
2452	chr17	28704016	28704327	+	0	NA	Intergenic	L2|LINE|L2	-1771	NM_001304	1362	Hs.446079	NM_001304	ENSG00000108582	CPD	GP180	carboxypeptidase D	protein-coding
3842	chr3	29197677	29197889	+	0	NA	Intergenic	Intergenic	124647	NR_109804	100873979	Hs.99391	NR_109804		RBMS3-AS3	-	RBMS3 antisense RNA 3	ncRNA
593	chr10	39093858	39093954	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	104179	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
3358	chr2	210336814	210337131	+	0	NA	intron (NM_001039538, intron 1 of 14)	intron (NM_001039538, intron 1 of 14)	48201	NM_001039538	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding
188	chr1	82314584	82315034	+	0	NA	intron (NM_001330645, intron 2 of 20)	intron (NM_001330645, intron 2 of 20)	48727	NM_012302	23266	Hs.24212	NM_012302	ENSG00000117114	ADGRL2	CIRL2|CL2|LEC1|LPHH1|LPHN2	adhesion G protein-coupled receptor L2	protein-coding
5400	chr7	114299758	114300679	+	0	NA	intron (NM_148898, intron 14 of 17)	intron (NM_148898, intron 14 of 17)	6818	NR_037439	100500896		NR_037439	ENSG00000272230	MIR3666	-	microRNA 3666	ncRNA
5221	chr7	61079577	61079600	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1684846	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
402	chr1	203290437	203290768	+	0	NA	Intergenic	Intergenic	15938	NM_006763	7832	Hs.519162	NM_006763	ENSG00000159388	BTG2	APRO1|PC3|TIS21	BTG anti-proliferation factor 2	protein-coding
3152	chr2	90375053	90375206	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1263245	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
1940	chr14	93352816	93353006	+	0	NA	Intergenic	Intergenic	20916	NR_135253	101929002	Hs.639356	NR_135253	ENSG00000258499	LOC101929002	-	uncharacterized LOC101929002	ncRNA
6000	chr9	95715191	95715270	+	0	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	5629	NM_001083536	89846	Hs.411081	NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
3366	chr2	211495502	211495531	+	0	NA	intron (NM_001122634, intron 11 of 27)	intron (NM_001122634, intron 11 of 27)	13221	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
1641	chr14	27289748	27289754	+	0	NA	non-coding (NR_110556, exon 5 of 5)	non-coding (NR_110556, exon 5 of 5)	1575	NR_110033	101927062		NR_110033	ENSG00000257845	LOC101927062	-	uncharacterized LOC101927062	ncRNA
640	chr10	42600649	42600733	+	0	NA	Intergenic	HSATII|Satellite|Satellite	262802	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
6139	chrUn_gl000216	9796	9862	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
1384	chr12	122596115	122596319	+	0	NA	intron (NM_014938, intron 1 of 16)	intron (NM_014938, intron 1 of 16)	-56049	NM_152759	254050	Hs.374856	NM_152759	ENSG00000158113	LRRC43	-	leucine rich repeat containing 43	protein-coding
1468	chr13	40113866	40114023	+	0	NA	intron (NM_005780, intron 2 of 3)	intron (NM_005780, intron 2 of 3)	63412	NM_005780	10186	Hs.507798	NM_005780	ENSG00000183722	LHFP	-	lipoma HMGIC fusion partner	protein-coding
5205	chr7	51205828	51206037	+	0	NA	intron (NM_001287438, intron 5 of 7)	intron (NM_001287438, intron 5 of 7)	178626	NM_015198	23242	Hs.99141	NM_015198	ENSG00000106078	COBL	-	cordon-bleu WH2 repeat protein	protein-coding
3184	chr2	92301315	92301354	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	172175	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
1726	chr14	54234674	54235034	+	0	NA	Intergenic	Intergenic	180348	NR_049843	100847076		NR_049843	ENSG00000266431	MIR5580	-	microRNA 5580	ncRNA
2068	chr15	66125225	66125376	+	0	NA	Intergenic	Intergenic	-36497	NM_001206836	8766	Hs.321541	NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
1464	chr13	39165174	39165422	+	0	NA	intron (NR_126377, intron 2 of 2)	intron (NR_126377, intron 2 of 2)	23437	NR_046999	100874147	Hs.555371	NR_046999		LINC00366	-	long intergenic non-protein coding RNA 366	ncRNA
1494	chr13	73747781	73748029	+	0	NA	Intergenic	Intergenic	114975	NM_001730	688	Hs.508234	NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	Kruppel like factor 5	protein-coding
3440	chr2	236877500	236877656	+	0	NA	intron (NM_001037131, intron 13 of 17)	intron (NM_001037131, intron 13 of 17)	199074	NM_001485	2637	Hs.184945	NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
4428	chr5	16931368	16931700	+	0	NA	intron (NM_012334, intron 1 of 40)	intron (NM_012334, intron 1 of 40)	4851	NM_012334	4651	Hs.481720	NM_012334	ENSG00000145555	MYO10	-	myosin X	protein-coding
5835	chr9	2299607	2299850	+	0	NA	Intergenic	Intergenic	141272	NM_001289400	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
4354	chr4	154388766	154388860	+	0	NA	intron (NM_015196, intron 2 of 34)	intron (NM_015196, intron 2 of 34)	1315	NM_001131007	23240	Hs.732450	NM_015196	ENSG00000121210	KIAA0922	TMEM131L	KIAA0922	protein-coding
2018	chr15	48060746	48061113	+	0	NA	exon (NM_153618, exon 18 of 19)	exon (NM_153618, exon 18 of 19)	50243	NM_153618	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding
3426	chr2	234898093	234898098	+	0	NA	intron (NM_024080, intron 21 of 25)	intron (NM_024080, intron 21 of 25)	-61251	NM_006944	6694	Hs.444488	NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
6132	chrUn_gl000216	7557	7574	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
1906	chr14	88819393	88819724	+	0	NA	Intergenic	MLT1J1|LTR|ERVL-MaLR	-26302	NM_021161	54207	Hs.560255	NM_021161	ENSG00000100433	KCNK10	K2p10.1|PPP1R97|TREK-2|TREK2	potassium two pore domain channel subfamily K member 10	protein-coding
464	chr1	220395103	220395346	+	0	NA	intron (NM_012414, intron 2 of 34)	intron (NM_012414, intron 2 of 34)	-21206	NR_002994	677818	Hs.730572	NR_002994	ENSG00000222370	SNORA36B	ACA36b	small nucleolar RNA, H/ACA box 36B	snoRNA
2977	chr2	37962766	37962912	+	0	NA	Intergenic	Intergenic	-63161	NM_001270436	10602	Hs.369574	NM_006449	ENSG00000163171	CDC42EP3	BORG2|CEP3|UB1	CDC42 effector protein 3	protein-coding
3235	chr2	130726394	130726549	+	0	NA	intron (NR_036537, intron 4 of 5)	intron (NR_036537, intron 4 of 5)	-10764	NM_032144	84084	Hs.591552	NM_032144	ENSG00000222014	RAB6C	WTH3	RAB6C, member RAS oncogene family	protein-coding
2011	chr15	45104286	45104683	+	0	NA	Intergenic	Intergenic	75924	NM_001301145	140691	Hs.745248	NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
5430	chr7	126218505	126218542	+	0	NA	intron (NM_001127323, intron 8 of 10)	intron (NM_001127323, intron 8 of 10)	479715	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
5052	chr6	141873800	141873950	+	0	NA	Intergenic	L1MEc|LINE|L1	536061	NM_002511	4829	Hs.552106	NM_002511	ENSG00000135577	NMBR	BB1|BB1R|NMB-R	neuromedin B receptor	protein-coding
6	chr1	724985	725040	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-10944	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
3452	chr20	2227136	2227272	+	0	NA	Intergenic	MER68-int|LTR|ERVL	39630	NM_001287682	388780	Hs.132163	NM_001287682		LOC388780	-	uncharacterized LOC388780	protein-coding
4435	chr5	26553514	26553650	+	0	NA	Intergenic	Intergenic	485107	NM_016279	1007	Hs.272212	NM_016279	ENSG00000113100	CDH9	-	cadherin 9	protein-coding
3867	chr3	93801283	93801372	+	0	NA	intron (NM_022072, intron 2 of 5)	Helitron3Na_Mam|RC|Helitron	-19260	NM_001195643	200895	Hs.718516	NM_176815	ENSG00000178700	DHFR2	DHFRL1|DHFRP4	dihydrofolate reductase 2	protein-coding
1304	chr12	105024044	105024095	+	0	NA	intron (NM_001173982, intron 2 of 2)	MIR|SINE|MIR	38658	NR_037487	100500843		NR_037487	ENSG00000264295	MIR3922	-	microRNA 3922	ncRNA
2327	chr16	53957334	53957588	+	0	NA	intron (NM_001080432, intron 7 of 8)	intron (NM_001080432, intron 7 of 8)	-115844	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1	ncRNA
6384	chrY	13684781	13684784	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	848607	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3179	chr2	92298243	92298374	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	169149	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
3189	chr2	97610630	97610812	+	0	NA	intron (NM_001122646, intron 8 of 16)	intron (NM_001122646, intron 8 of 16)	25878	NR_110209	101927053	Hs.677537	NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
3569	chr20	43357507	43357687	+	0	NA	intron (NR_132377, intron 3 of 4)	L1ME2|LINE|L1	14112	NM_001323369	8839	Hs.592145	NM_003881	ENSG00000064205	WISP2	CCN5|CT58|CTGF-L	WNT1 inducible signaling pathway protein 2	protein-coding
6152	chrUn_gl000216	18045	18256	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
1593	chr13	108110549	108111001	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	72821	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
705	chr10	92969832	92970211	+	0	NA	intron (NM_001257101, intron 1 of 9)	intron (NM_001257101, intron 1 of 9)	-9887	NM_001256549	84333	Hs.500512	NM_032373	ENSG00000180628	PCGF5	RNF159	polycomb group ring finger 5	protein-coding
6291	chrX	61682968	61684193	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	887638	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
5763	chr8	109055450	109055564	+	0	NA	intron (NM_178565, intron 2 of 5)	intron (NM_178565, intron 2 of 5)	38660	NM_001317942	340419	Hs.444834	NM_178565	ENSG00000147655	RSPO2	CRISTIN2	R-spondin 2	protein-coding
5953	chr9	78790096	78790115	+	0	NA	intron (NM_006200, intron 14 of 20)	intron (NM_006200, intron 14 of 20)	219339	NM_018339	55312	Hs.37558	NM_018339	ENSG00000135002	RFK	RIFK	riboflavin kinase	protein-coding
4763	chr6	24920052	24920230	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-8743	NM_001346031	9750	Hs.559459	NM_014722	ENSG00000111913	FAM65B	C6orf32|DFNB104|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65 member B	protein-coding
4381	chr5	302200	302279	+	0	NA	intron (NM_001267557, intron 2 of 3)	intron (NM_001267557, intron 2 of 3)	-2052	NM_020731	57491	Hs.50823	NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl-hydrocarbon receptor repressor	protein-coding
1720	chr14	51974203	51974302	+	0	NA	intron (NM_001042481, intron 1 of 14)	intron (NM_001042481, intron 1 of 14)	18413	NM_001042481	122786	Hs.434914	NM_152330	ENSG00000139926	FRMD6	C14orf31|EX1|Willin|c14_5320	FERM domain containing 6	protein-coding
5786	chr8	123981811	123982171	+	0	NA	intron (NM_014943, intron 3 of 3)	intron (NM_014943, intron 3 of 3)	72672	NM_001330601	79139	Hs.241576	NM_024295	ENSG00000136986	DERL1	DER-1|DER1|derlin-1	derlin 1	protein-coding
3053	chr2	66218683	66218832	+	0	NA	Intergenic	Intergenic	366703	NR_039938	100616464		NR_039938	ENSG00000264525	MIR4778	-	microRNA 4778	ncRNA
2206	chr16	28166694	28166857	+	0	NA	intron (NM_001270940, intron 8 of 24)	intron (NM_001270940, intron 8 of 24)	56464	NM_001270940	23214	Hs.460468	NM_015171	ENSG00000169180	XPO6	EXP6|RANBP20	exportin 6	protein-coding
5550	chr8	9637639	9637695	+	0	NA	3' UTR (NM_003747, exon 27 of 27)	3' UTR (NM_003747, exon 27 of 27)	38485	NR_030327	693182		NR_030327	ENSG00000207701	MIR597	MIRN597|hsa-mir-597|mir-597	microRNA 597	ncRNA
4471	chr5	51787515	51788205	+	0	NA	Intergenic	Intergenic	-295914	NM_015946	53918	Hs.644352	NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota homolog (Drosophila)	protein-coding
2177	chr16	12991514	12991694	+	0	NA	Intergenic	Intergenic	-3873	NM_001145205	729993	Hs.130661	NM_001145204	ENSG00000237515	SHISA9	CKAMP44	shisa family member 9	protein-coding
912	chr11	51593643	51593660	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	78369	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
785	chr11	15241661	15241845	+	0	NA	intron (NM_001278315, intron 6 of 12)	intron (NM_001278315, intron 6 of 12)	71105	NM_001278313	387755	Hs.591997	NM_001031853	ENSG00000188487	INSC	-	inscuteable homolog (Drosophila)	protein-coding
1432	chr13	22508671	22508921	+	0	NA	Intergenic	Intergenic	-56497	NR_047040	100874182	Hs.148951	NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
4574	chr5	142602628	142603009	+	0	NA	3' UTR (NM_001135608, exon 23 of 23)	3' UTR (NM_001135608, exon 23 of 23)	30753	NR_046816	100874372	Hs.666717	NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
599	chr10	39107157	39107442	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	117572	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
1930	chr14	91621315	91621614	+	0	NA	intron (NM_001286470, intron 4 of 16)	L2c|LINE|L2	28694	NR_003709	100124539	Hs.693444	NR_003709	ENSG00000221102	SNORA11B	-	small nucleolar RNA, H/ACA box 11B	snoRNA
587	chr10	39081555	39081681	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	91891	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
1235	chr12	92067460	92067729	+	0	NA	Intergenic	Intergenic	467895	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
3814	chr22	47080878	47080912	+	0	NA	3' UTR (NM_022766, exon 13 of 13)	3' UTR (NM_022766, exon 13 of 13)	53257	NM_022766	64781	Hs.200668	NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
95	chr1	40168039	40168186	+	0	NA	Intergenic	Intergenic	-10730	NM_016257	51440	Hs.743975	NM_016257	ENSG00000116983	HPCAL4	HLP4	hippocalcin like 4	protein-coding
298	chr1	142967376	142967381	+	0	NA	Intergenic	(CACTC)n|Simple_repeat|Simple_repeat	234861	NR_110761	102723769	Hs.652926	NR_110761		LOC102723769	-	uncharacterized LOC102723769	ncRNA
5851	chr9	8086405	8086419	+	0	NA	Intergenic	Intergenic	-286606	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
3291	chr2	161522607	161522630	+	0	NA	Intergenic	Intergenic	-172300	NM_002897	5937	Hs.470412	NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
923	chr11	62608928	62608968	+	0	NA	Intergenic	Intergenic	-1320	NM_018093	54663	Hs.654620	NM_018093	ENSG00000133316	WDR74	-	WD repeat domain 74	protein-coding
243	chr1	110824612	110825137	+	0	NA	Intergenic	Intergenic	56919	NR_036595	440600	Hs.649375	NR_036595	ENSG00000227963	LOC440600	-	uncharacterized LOC440600	ncRNA
4731	chr6	23177390	23177613	+	0	NA	Intergenic	Intergenic	-459348	NR_134613	105374972	Hs.484889	NR_134613		LOC105374972	-	uncharacterized LOC105374972	ncRNA
3835	chr3	24128423	24128429	+	0	NA	Intergenic	Intergenic	16312	NR_026834	152024	Hs.385606	NR_026834	ENSG00000224074	LINC00691	-	long intergenic non-protein coding RNA 691	ncRNA
2051	chr15	60846660	60847315	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	37720	NM_134262	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
6338	chrX	131727850	131727871	+	0	NA	Intergenic	Intergenic	-73810	NR_046691	100874102	Hs.619341	NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
6222	chrUn_gl000225	21560	21984	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
2682	chr18	40256183	40256362	+	0	NA	intron (NR_046174, intron 7 of 9)	intron (NR_046174, intron 7 of 9)	439385	NM_001272077	6014	Hs.464985	NM_002930	ENSG00000152214	RIT2	RIBA|RIN|ROC2	Ras like without CAAX 2	protein-coding
5791	chr8	125685465	125685647	+	0	NA	intron (NM_014751, intron 3 of 13)	AluSx1|SINE|Alu	55192	NM_001282971	9788	Hs.336994	NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS1, I-BAR domain containing	protein-coding
5382	chr7	107903873	107904304	+	0	NA	intron (NM_005010, intron 3 of 27)	intron (NM_005010, intron 3 of 27)	-23474	NM_001037132	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
4968	chr6	104373526	104373640	+	0	NA	Intergenic	Intergenic	933838	NM_001321084	57531	Hs.434340	NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
753	chr11	8311508	8311895	+	0	NA	Intergenic	Intergenic	-21519	NM_001270428	4004	Hs.654426	NM_002315	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1	protein-coding
6089	chr9_gl000199_random	33742	33745	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
2404	chr17	2387997	2388362	+	0	NA	intron (NM_024086, intron 2 of 9)	MER102a|DNA|hAT-Charlie	27021	NM_024086	79066	Hs.632237	NM_024086	ENSG00000127804	METTL16	METT10D	methyltransferase like 16	protein-coding
2171	chr16	12327867	12327867	+	0	NA	intron (NM_032167, intron 14 of 20)	L1MB7|LINE|L1	257276	NM_032167	92017	Hs.458401	NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
106	chr1	42806166	42806250	+	0	NA	Intergenic	Intergenic	-4660	NM_001198850	22887	Hs.26023	NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
2611	chr18	25441549	25441723	+	0	NA	Intergenic	Intergenic	174913	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
4425	chr5	14185985	14186419	+	0	NA	intron (NM_007118, intron 1 of 56)	intron (NM_007118, intron 1 of 56)	42391	NM_007118	7204	Hs.130031	NM_007118	ENSG00000038382	TRIO	ARHGEF23|MEBAS|MRD44|tgat	trio Rho guanine nucleotide exchange factor	protein-coding
65	chr1	32392455	32392538	+	0	NA	intron (NM_080391, intron 1 of 5)	L2a|LINE|L2	-7237	NM_001195101	8073	Hs.470477	NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase type IVA, member 2	protein-coding
5249	chr7	61791703	61791716	+	0	NA	Intergenic	HSATII|Satellite|Satellite	972725	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
203	chr1	86875090	86875527	+	0	NA	Intergenic	LTR18A|LTR|ERVL	-13283	NM_001184765	57489	Hs.149360	NM_020729	ENSG00000122417	ODF2L	dJ977L11.1	outer dense fiber of sperm tails 2 like	protein-coding
6114	chrUn_gl000212	42448	42456	+	0	NA	intron (NR_027278, intron 1 of 7)	AluSc8|SINE|Alu	18403	NR_027278	26080	Hs.448583	NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
4373	chr4	184644270	184644361	+	0	NA	Intergenic	CpG	63895	NM_199053	60684	Hs.443240	NM_021942	ENSG00000168538	TRAPPC11	C4orf41|FOIGR|GRY|LGMD2S	trafficking protein particle complex 11	protein-coding
1023	chr11	115904564	115904667	+	0	NA	Intergenic	Intergenic	-273697	NR_034148	283143	Hs.130499	NR_034148		LINC00900	-	long intergenic non-protein coding RNA 900	ncRNA
6093	chr9_gl000199_random	35088	35213	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
5705	chr8	93848035	93848198	+	0	NA	Intergenic	Intergenic	-49828	NR_046114	441369	Hs.521683	NR_046114	ENSG00000248858	FLJ46284	-	uncharacterized LOC441369	ncRNA
2742	chr18	54756056	54756176	+	0	NA	Intergenic	Intergenic	-16766	NR_048536	100885779	Hs.742426	NR_048536	ENSG00000258609	LINC-ROR	ROR|lincRNA-RoR	long intergenic non-protein coding RNA, regulator of reprogramming	ncRNA
5909	chr9	66835587	66835671	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-87338	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
4702	chr6	21115248	21115435	+	0	NA	intron (NM_017774, intron 13 of 15)	intron (NM_017774, intron 13 of 15)	396782	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
5528	chr7_gl000195_random	30505	33332	+	0	NA	Intergenic	Intergenic	34122	NM_001322975	102723360	Hs.743984	NM_001322975	ENSG00000277991	LOC102723360	-	uncharacterized LOC102723360	protein-coding
86	chr1	38528719	38528992	+	0	NA	Intergenic	Intergenic	-16405	NM_002699	5453	Hs.1837	NM_002699	ENSG00000185668	POU3F1	OCT6|OTF6|SCIP	POU class 3 homeobox 1	protein-coding
1199	chr12	59479936	59480383	+	0	NA	Intergenic	Intergenic	-165840	NM_153377	121227	Hs.253736	NM_153377	ENSG00000139263	LRIG3	LIG3	leucine rich repeats and immunoglobulin like domains 3	protein-coding
2084	chr15	70381082	70381286	+	0	NA	intron (NM_001105192, intron 4 of 19)	intron (NM_001105192, intron 4 of 19)	5940	NM_001282982	7090	Hs.287362	NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	transducin like enhancer of split 3	protein-coding
2473	chr17	45269788	45269944	+	0	NA	Intergenic	AluY|SINE|Alu	-3188	NM_001256	996	Hs.463295	NM_001256	ENSG00000004897	CDC27	ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2	cell division cycle 27	protein-coding
1158	chr12	34842046	34842055	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	666834	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
656	chr10	42817579	42818019	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	45694	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
2170	chr16	9241653	9241934	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	56256	NM_014117	29035	Hs.221497	NM_014117	ENSG00000182831	C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
2335	chr16	66369021	66369045	+	0	NA	Intergenic	Intergenic	-31477	NM_001795	1003	Hs.76206	NM_001795	ENSG00000179776	CDH5	7B4|CD144	cadherin 5	protein-coding
2921	chr2	5263685	5264004	+	0	NA	Intergenic	Intergenic	-560032	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
4726	chr6	21750534	21750616	+	0	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	83900	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
3468	chr20	10312619	10313883	+	0	NA	Intergenic	L2c|LINE|L2	99322	NM_018848	8195	Hs.472119	NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	McKusick-Kaufman syndrome	protein-coding
435	chr1	209010752	209010901	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-487975	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
3195	chr2	99525915	99525995	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	26729	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211 like	protein-coding
6304	chrX	61731185	61731271	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	839990	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
1482	chr13	49403424	49403585	+	0	NA	Intergenic	Intergenic	-146544	NM_001079673	22862	Hs.508010	NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
885	chr11	51581942	51581946	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	66662	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
1412	chr12	129562976	129563390	+	0	NA	exon (NM_133448, exon 8 of 9)	exon (NM_133448, exon 8 of 9)	-31052	NR_104173	283352	Hs.665667	NR_104172	ENSG00000249196	LOC283352	-	uncharacterized LOC283352	ncRNA
1709	chr14	43188758	43189016	+	0	NA	Intergenic	Intergenic	1112828	NM_152447	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
4896	chr6	81348130	81348485	+	0	NA	Intergenic	Intergenic	531980	NM_001318975	594	Hs.654441	NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
5075	chr6	157113422	157113688	+	0	NA	intron (NM_020732, intron 1 of 19)	AluJr|SINE|Alu	-12690	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
339	chr1	168019603	168019811	+	0	NA	intron (NM_018442, intron 15 of 19)	intron (NM_018442, intron 15 of 19)	51809	NR_031702	100313835		NR_031702	ENSG00000221545	MIR1255B2	MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2	microRNA 1255b-2	ncRNA
228	chr1	106605938	106606141	+	0	NA	Intergenic	Intergenic	-444482	NR_125955	101928476	Hs.563856	NR_125954	ENSG00000230768	LINC01676	-	long intergenic non-protein coding RNA 1676	ncRNA
6355	chrY	13141232	13141249	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1392149	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3783	chr22	29330232	29330370	+	0	NA	intron (NM_032173, intron 1 of 8)	intron (NM_032173, intron 1 of 8)	16924	NM_032173	84133	Hs.604200	NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
268	chr1	121352813	121352816	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	91904	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
829	chr11	22770905	22771079	+	0	NA	intron (NM_001143830, intron 6 of 7)	intron (NM_001143830, intron 6 of 7)	74673	NM_005256	2620	Hs.711297	NM_005256	ENSG00000148935	GAS2	-	growth arrest specific 2	protein-coding
2872	chr19_gl000208_random	5	10	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
3677	chr21	36628704	36628855	+	0	NA	Intergenic	Intergenic	-207184	NM_001754	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
596	chr10	39094018	39094248	+	0	NA	Intergenic	Intergenic	104406	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
1297	chr12	104075051	104075391	+	0	NA	intron (NM_017564, intron 25 of 68)	MLT1C|LTR|ERVL-MaLR	94152	NM_017564	55576	Hs.408249	NM_017564	ENSG00000136011	STAB2	FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1	stabilin 2	protein-coding
5776	chr8	110610162	110610500	+	0	NA	intron (NM_001099748, intron 4 of 7)	MER5A|DNA|hAT-Charlie	9960	NM_001330596	55638	Hs.390738	NM_017786	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin	protein-coding
2090	chr15	72491174	72491259	+	0	NA	TTS (NM_001206796)	TTS (NM_001206796)	-1080	NM_001012642	196996	Hs.596332	NM_001012642	ENSG00000175318	GRAMD2	-	GRAM domain containing 2	protein-coding
1521	chr13	94322603	94322798	+	0	NA	intron (NM_005708, intron 2 of 8)	intron (NM_005708, intron 2 of 8)	188026	NR_046536	100873973	Hs.615939	NR_046536		GPC6-AS2	-	GPC6 antisense RNA 2	ncRNA
5029	chr6	124289215	124289415	+	0	NA	intron (NM_153355, intron 1 of 5)	intron (NM_153355, intron 1 of 5)	164324	NM_001040214	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding
1862	chr14	78808452	78808508	+	0	NA	intron (NR_073547, intron 4 of 20)	MER81|DNA|hAT-Blackjack	-61594	NM_004796	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
2352	chr16	71018767	71018924	+	0	NA	intron (NM_001270974, intron 28 of 85)	L2a|LINE|L2	-183784	NM_018052	55697	Hs.445061	NM_018052	ENSG00000103043	VAC14	ArPIKfyve|SNDC|TAX1BP2|TRX	Vac14, PIKFYVE complex component	protein-coding
3495	chr20	18647623	18648129	+	0	NA	intron (NM_080820, intron 4 of 5)	intron (NM_080820, intron 4 of 5)	31476	NR_109955	101929526	Hs.639402	NR_109955	ENSG00000233993	LOC101929526	-	uncharacterized LOC101929526	ncRNA
5420	chr7	125416953	125416990	+	0	NA	Intergenic	Intergenic	-512626	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
6237	chrUn_gl000225	197262	197279	+	0	NA	NA	(GAATG)n|Satellite|Satellite	NA	NA								
1082	chr12	2361026	2361193	+	0	NA	intron (NM_001129830, intron 3 of 47)	intron (NM_001129830, intron 3 of 47)	-17833	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
5572	chr8	26187650	26187793	+	0	NA	intron (NM_002717, intron 2 of 9)	L1MEc|LINE|L1	36989	NM_001177591	5520	Hs.146339	NM_002717	ENSG00000221914	PPP2R2A	B55A|B55ALPHA|PR52A|PR55A	protein phosphatase 2 regulatory subunit Balpha	protein-coding
121	chr1	48992004	48992036	+	0	NA	Intergenic	MIRb|SINE|MIR	-54140	NM_019073	54558	Hs.538103	NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
1066	chr11	128212360	128212763	+	0	NA	Intergenic	Intergenic	179644	NM_005238	2113	Hs.369438	NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
487	chr1	224504987	224505425	+	0	NA	intron (NM_206840, intron 3 of 21)	L2c|LINE|L2	12685	NM_001243147	4931	Hs.497867	NM_002533	ENSG00000143748	NVL	NVL2	nuclear VCP-like	protein-coding
494	chr1	228928651	228928804	+	0	NA	Intergenic	Intergenic	57903	NM_021205	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
1956	chr14	97355015	97355166	+	0	NA	Intergenic	Intergenic	-54826	NR_104113	145249		NR_104113	ENSG00000225163	LINC00618	C14orf63	long intergenic non-protein coding RNA 618	ncRNA
3333	chr2	184530432	184530434	+	0	NA	Intergenic	Intergenic	541350	NM_001287585	129401	Hs.180591	NM_138285	ENSG00000163002	NUP35	MP-44|MP44|NP44|NUP53	nucleoporin 35	protein-coding
238	chr1	109153111	109153414	+	0	NA	intron (NM_001010883, intron 3 of 10)	intron (NM_001010883, intron 3 of 10)	50291	NM_001010883	284611	Hs.200230	NM_001010883	ENSG00000162636	FAM102B	SYM-3B	family with sequence similarity 102 member B	protein-coding
2235	chr16	33896126	33896154	+	0	NA	Intergenic	Intergenic	66363	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
2778	chr18	63154672	63154907	+	0	NA	Intergenic	Intergenic	-262699	NM_033646	1005	Hs.541003	NM_004361	ENSG00000081138	CDH7	CDH7L1	cadherin 7	protein-coding
3175	chr2	92291852	92292025	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	162779	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
4819	chr6	52040940	52040981	+	0	NA	Intergenic	AluSq|SINE|Alu	-10225	NM_002190	3605	Hs.41724	NM_002190	ENSG00000112115	IL17A	CTLA-8|CTLA8|IL-17|IL-17A|IL17	interleukin 17A	protein-coding
873	chr11	51572887	51573795	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	58059	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
3604	chr21	10721415	10721581	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	269445	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
3081	chr2	70359865	70360115	+	0	NA	Intergenic	Intergenic	-7542	NR_024444	100133985	Hs.135528	NR_024444	ENSG00000231327	LINC01816	-	long intergenic non-protein coding RNA 1816	ncRNA
4792	chr6	38183427	38183587	+	0	NA	intron (NM_001099272, intron 9 of 10)	intron (NM_001099272, intron 9 of 10)	-265865	NR_144472	101929425	Hs.665280	NR_144472		BTBD9-AS1	-	BTBD9 antisense RNA 1	ncRNA
3099	chr2	89850663	89851204	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	739049	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
448	chr1	211877083	211877191	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-28165	NM_001204182	4751	Hs.153704	NM_002497	ENSG00000117650	NEK2	HsPK21|NEK2A|NLK1|PPP1R111|RP67	NIMA related kinase 2	protein-coding
5115	chr7	3308186	3308430	+	0	NA	Intergenic	Intergenic	-32772	NM_152744	221935	Hs.653013	NM_152744	ENSG00000146555	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
3634	chr21	10833785	10834029	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	157036	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
3760	chr22	19104314	19104487	+	0	NA	intron (NM_005137, intron 1 of 9)	intron (NM_005137, intron 1 of 9)	5567	NR_033674	9993	Hs.517357	NM_005137	ENSG00000070413	DGCR2	DGS-C|IDD|LAN|SEZ-12	DiGeorge syndrome critical region gene 2	protein-coding
2631	chr18	31697154	31697589	+	0	NA	intron (NM_001198546, intron 2 of 9)	intron (NM_001198546, intron 2 of 9)	-68795	NM_001198549	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
2278	chr16	46435600	46435900	+	0	NA	Intergenic	HSATII|Satellite|Satellite	167259	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
4152	chr4	49132260	49132301	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	143621	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
4639	chr6	3919409	3919581	+	0	NA	Intergenic	MER50|LTR|ERV1	69895	NM_012135	26240	Hs.140944	NM_012135	ENSG00000145945	FAM50B	D6S2654E|X5L	family with sequence similarity 50 member B	protein-coding
4647	chr6	6826400	6826530	+	0	NA	Intergenic	Intergenic	-203406	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
3297	chr2	166681466	166681587	+	0	NA	Intergenic	HAL1|LINE|L1	-30723	NM_004482	2591	Hs.170986	NM_004482	ENSG00000115339	GALNT3	GalNAc-T3|HFTC|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
6413	chrY	13811051	13811273	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	722227	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5407	chr7	114871077	114871665	+	0	NA	promoter-TSS (NR_126407)	promoter-TSS (NR_126407)	38	NR_126407	104355291		NR_126407	ENSG00000233607	LINC01392	-	long intergenic non-protein coding RNA 1392	ncRNA
1532	chr13	97909564	97909823	+	0	NA	intron (NM_001306070, intron 1 of 7)	intron (NM_001306070, intron 1 of 7)	35143	NM_144778	10150	Hs.657347	NM_144778	ENSG00000139793	MBNL2	MBLL|MBLL39|PRO2032	muscleblind like splicing regulator 2	protein-coding
4246	chr4	77176935	77177389	+	0	NA	intron (NM_001242939, intron 1 of 6)	L1ME5|LINE|L1	4309	NM_001136570	100129583	Hs.720509	NM_001136570	ENSG00000189157	FAM47E	-	family with sequence similarity 47 member E	protein-coding
713	chr10	94559815	94560316	+	0	NA	Intergenic	Intergenic	-26523	NM_001013848	54536	Hs.655657	NM_019053	ENSG00000138190	EXOC6	EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p	exocyst complex component 6	protein-coding
5518	chr7	152374589	152374712	+	0	NA	Intergenic	AluSx4|SINE|Alu	-1400	NM_005431	7516	Hs.647093	NM_005431	ENSG00000196584	XRCC2	FANCU	X-ray repair cross complementing 2	protein-coding
6214	chrUn_gl000216	163884	164600	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
6185	chrUn_gl000216	75616	76236	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
3557	chr20	32142754	32142900	+	0	NA	intron (NM_001032999, intron 1 of 10)	MER57E1|LTR|ERV1	-7344	NM_001039709	9139	Hs.153934	NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 translocation partner 2	protein-coding
4233	chr4	68266805	68266841	+	0	NA	Intergenic	Intergenic	20895	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
2839	chr19	29799944	29800340	+	0	NA	intron (NR_040029, intron 9 of 9)	intron (NR_040029, intron 9 of 9)	-96006	NM_006003	7386	Hs.743307	NM_006003	ENSG00000169021	UQCRFS1	RIP1|RIS1|RISP|UQCR5	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding
4532	chr5	124745092	124745313	+	0	NA	Intergenic	Intergenic	-83752	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
1679	chr14	36893606	36894007	+	0	NA	Intergenic	Intergenic	89184	NR_138598	253970	Hs.509165	NM_001101341	ENSG00000229415	SFTA3	NANCI|SFTPH|SP-H	surfactant associated 3	protein-coding
4238	chr4	74534269	74534486	+	0	NA	Intergenic	HERVK13-int|LTR|ERVK	-48029	NM_001270392	166824	Hs.529677	NM_177532	ENSG00000169435	RASSF6	-	Ras association domain family member 6	protein-coding
4346	chr4	151288269	151288426	+	0	NA	intron (NM_006726, intron 48 of 57)	intron (NM_006726, intron 48 of 57)	-214730	NM_006439	10586	Hs.584852	NM_006439	ENSG00000181541	MAB21L2	MCOPS14	mab-21 like 2	protein-coding
4215	chr4	49660117	49660142	+	0	NA	Intergenic	Intergenic	671470	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
1262	chr12	97622643	97623068	+	0	NA	Intergenic	L2b|LINE|L2	-235944	NR_024037	196475	Hs.652568	NR_024037	ENSG00000255794	RMST	LINC00054|NCRMS|NCRNA00054	rhabdomyosarcoma 2 associated transcript (non-protein coding)	ncRNA
1290	chr12	103635249	103635547	+	0	NA	intron (NR_103526, intron 10 of 10)	MIR3|SINE|MIR	89778	NR_126333	101929058	Hs.171310	NR_126333	ENSG00000257860	LOC101929058	-	uncharacterized LOC101929058	ncRNA
1527	chr13	95898879	95899209	+	0	NA	intron (NM_001105515, intron 3 of 20)	intron (NM_001105515, intron 3 of 20)	54656	NM_005845	10257	Hs.508423	NM_005845	ENSG00000125257	ABCC4	MOAT-B|MOATB|MRP4	ATP binding cassette subfamily C member 4	protein-coding
2162	chr16	7506454	7506704	+	0	NA	intron (NM_145892, intron 1 of 12)	intron (NM_145892, intron 1 of 12)	123828	NM_145893	54715	Hs.459842	NM_018723	ENSG00000078328	RBFOX1	2BP1|A2BP1|FOX-1|FOX1|HRNBP1	RNA binding protein, fox-1 homolog 1	protein-coding
1132	chr12	21590272	21590734	+	0	NA	promoter-TSS (NM_024854)	promoter-TSS (NM_024854)	-35	NM_024854	79912	Hs.709545	NM_024854	ENSG00000121350	PYROXD1	MFM8	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding
4308	chr4	129767983	129768327	+	0	NA	intron (NM_001287437, intron 4 of 10)	intron (NM_001287437, intron 4 of 10)	35156	NM_001287443	79960	Hs.12420	NM_024900	ENSG00000077684	JADE1	PHF17	jade family PHD finger 1	protein-coding
4707	chr6	21189087	21189181	+	0	NA	intron (NM_017774, intron 13 of 15)	intron (NM_017774, intron 13 of 15)	322989	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
5022	chr6	113964062	113964341	+	0	NA	intron (NR_125844, intron 1 of 2)	intron (NR_125844, intron 1 of 2)	7076	NR_125844	101927686	Hs.402044	NR_125844	ENSG00000230943	LOC101927686	-	uncharacterized LOC101927686	ncRNA
5259	chr7	61798736	61798960	+	0	NA	Intergenic	HSATII|Satellite|Satellite	965586	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
5398	chr7	111802488	111802670	+	0	NA	intron (NM_014705, intron 1 of 51)	(TC)n|Simple_repeat|Simple_repeat	43883	NM_014705	9732	Hs.654652	NM_014705	ENSG00000128512	DOCK4	-	dedicator of cytokinesis 4	protein-coding
1925	chr14	90167196	90167384	+	0	NA	Intergenic	Intergenic	-81796	NM_001085471	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
3847	chr3	42861163	42861179	+	0	NA	5' UTR (NM_001296, exon 2 of 3)	5' UTR (NM_001296, exon 2 of 3)	10207	NM_001296	1238	Hs.146346	NM_001296	ENSG00000144648	ACKR2	CCBP2|CCR10|CCR9|CMKBR9|D6|hD6	atypical chemokine receptor 2	protein-coding
2574	chr18	9899005	9899218	+	0	NA	Intergenic	Intergenic	13388	NM_001098529	84203	Hs.98712	NM_032243	ENSG00000168454	TXNDC2	SPTRX|SPTRX1	thioredoxin domain containing 2	protein-coding
2916	chr2	5198455	5198724	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-494777	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
3126	chr2	89873996	89874065	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	762146	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
631	chr10	42409049	42409056	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	454441	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
547	chr10	38778045	38778060	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	60978	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
1544	chr13	99054448	99054844	+	0	NA	intron (NM_005766, intron 13 of 26)	intron (NM_005766, intron 13 of 26)	119733	NM_003576	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
1616	chr13	112767439	112767782	+	0	NA	Intergenic	Intergenic	6177	NR_120394	100505996	Hs.654853	NR_120392	ENSG00000224243	LINC00403	-	long intergenic non-protein coding RNA 403	ncRNA
4694	chr6	20745131	20745200	+	0	NA	intron (NM_017774, intron 6 of 15)	intron (NM_017774, intron 6 of 15)	210477	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
396	chr1	202934020	202934034	+	0	NA	intron (NM_016243, intron 5 of 8)	intron (NM_016243, intron 5 of 8)	2377	NM_016243	51706	Hs.334832	NM_016243	ENSG00000159348	CYB5R1	B5R.1|B5R1|B5R2|NQO3A2|humb5R2	cytochrome b5 reductase 1	protein-coding
1422	chr13	22213734	22214074	+	0	NA	Intergenic	Intergenic	-31311	NM_002010	2254	Hs.111	NM_002010	ENSG00000102678	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
482	chr1	224201661	224201701	+	0	NA	intron (NR_136593, intron 2 of 4)	(GAATG)n|Satellite|Satellite	21249	NR_136593	100287497	Hs.568390	NR_136590		LOC100287497	-	septin 7 pseudogene	pseudo
949	chr11	73662936	73663204	+	0	NA	intron (NM_153614, intron 1 of 7)	intron (NM_153614, intron 1 of 7)	1706	NM_153614	374407	Hs.567888	NM_153614	ENSG00000187726	DNAJB13	CILD34|RSPH16A|TSARG5|TSARG6	DnaJ heat shock protein family (Hsp40) member B13	protein-coding
499	chr1	230321768	230322178	+	0	NA	intron (NM_001291866, intron 2 of 15)	intron (NM_001291866, intron 2 of 15)	119031	NM_004481	2590	Hs.743964	NM_004481	ENSG00000143641	GALNT2	GalNAc-T2	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding
3432	chr2	235007640	235007758	+	0	NA	Intergenic	Intergenic	48353	NM_006944	6694	Hs.444488	NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
4713	chr6	21264894	21265048	+	0	NA	Intergenic	Intergenic	247152	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
4556	chr5	133162931	133163090	+	0	NA	Intergenic	Intergenic	-86358	NR_131252	105664404	Hs.582536	NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
5262	chr7	61801295	61801295	+	0	NA	Intergenic	HSATII|Satellite|Satellite	963139	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
4970	chr6	105159210	105159656	+	0	NA	Intergenic	Intergenic	147988	NM_001321084	57531	Hs.434340	NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
1047	chr11	126762418	126762615	+	0	NA	intron (NM_032531, intron 1 of 16)	(TG)n|Simple_repeat|Simple_repeat	-48126	NR_046986	100874251	Hs.319053	NR_046986	ENSG00000254960	KIRREL3-AS2	-	KIRREL3 antisense RNA 2	ncRNA
3856	chr3	55278348	55278821	+	0	NA	Intergenic	Intergenic	236842	NM_001256105	7474	Hs.643085	NM_003392	ENSG00000114251	WNT5A	hWNT5A	Wnt family member 5A	protein-coding
1276	chr12	100645833	100646055	+	0	NA	TTS (NM_152317)	TTS (NM_152317)	14913	NM_152317	120863	Hs.653118	NM_152317	ENSG00000166153	DEPDC4	DEP.4	DEP domain containing 4	protein-coding
5958	chr9	80204635	80204674	+	0	NA	intron (NM_004297, intron 1 of 6)	intron (NM_004297, intron 1 of 6)	58578	NM_004297	9630	Hs.657795	NM_004297	ENSG00000156049	GNA14	-	G protein subunit alpha 14	protein-coding
3228	chr2	123428425	123428655	+	0	NA	Intergenic	Intergenic	915419	NR_048557	7247	Hs.75066	NM_004622	ENSG00000211460	TSN	BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN	translin	protein-coding
909	chr11	51592274	51592275	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	76992	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
5996	chr9	93331036	93331175	+	0	NA	intron (NR_034157, intron 1 of 5)	MLT1J1-int|LTR|ERVL-MaLR	13923	NR_034157	340515	Hs.522284	NM_001105317		LINC01501	-	long intergenic non-protein coding RNA 1501	ncRNA
4121	chr4	40335960	40336085	+	0	NA	Intergenic	Intergenic	-1324	NM_017581	55584	Hs.272278	NM_017581	ENSG00000174343	CHRNA9	HSA243342|NACHRA9	cholinergic receptor nicotinic alpha 9 subunit	protein-coding
5583	chr8	29657938	29657944	+	0	NA	Intergenic	Intergenic	28079	NR_125817	101929470	Hs.204721	NR_125817	ENSG00000248964	LOC101929470	-	uncharacterized LOC101929470	ncRNA
4315	chr4	138980351	138980691	+	0	NA	intron (NR_037866, intron 7 of 10)	L1PA15|LINE|L1	-29647	NR_038380	641364	Hs.570846	NR_038380	ENSG00000250033	SLC7A11-AS1	-	SLC7A11 antisense RNA 1	ncRNA
1124	chr12	16266441	16266661	+	0	NA	Intergenic	Intergenic	164068	NM_001170798	729025	Hs.692712	NM_001170798	ENSG00000188991	SLC15A5	-	solute carrier family 15 member 5	protein-coding
2618	chr18	25625629	25626046	+	0	NA	intron (NM_001792, intron 2 of 15)	intron (NM_001792, intron 2 of 15)	-9288	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
2981	chr2	38014276	38014511	+	0	NA	Intergenic	Intergenic	42461	NR_110011	101929559	Hs.468200	NR_110011	ENSG00000237803	LINC00211	NCRNA00211	long intergenic non-protein coding RNA 211	ncRNA
75	chr1	35056085	35056179	+	0	NA	Intergenic	Intergenic	79163	NR_030278	693137		NR_030278	ENSG00000207941	MIR552	MIRN552|hsa-mir-552	microRNA 552	ncRNA
4266	chr4	87994464	87994969	+	0	NA	intron (NM_001313959, intron 3 of 19)	intron (NM_001313959, intron 3 of 19)	66563	NM_005935	4299	Hs.480190	NM_005935	ENSG00000172493	AFF1	AF4|MLLT2|PBM1	AF4/FMR2 family member 1	protein-coding
5618	chr8	43097158	43097216	+	0	NA	Intergenic	SAR|Satellite|Satellite	-50398	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
2588	chr18	18513813	18515318	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	177247	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
1163	chr12	34846035	34846200	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	670901	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
450	chr1	211877494	211878117	+	0	NA	Intergenic	Intergenic	-28833	NM_001204182	4751	Hs.153704	NM_002497	ENSG00000117650	NEK2	HsPK21|NEK2A|NLK1|PPP1R111|RP67	NIMA related kinase 2	protein-coding
4518	chr5	121652758	121652763	+	0	NA	intron (NM_001308107, intron 1 of 8)	intron (NM_001308107, intron 1 of 8)	4996	NM_001308100	9627	Hs.426463	NM_005460	ENSG00000064692	SNCAIP	SYPH1|Sph1	synuclein alpha interacting protein	protein-coding
1702	chr14	42368468	42368927	+	0	NA	intron (NR_144389, intron 6 of 6)	intron (NR_144389, intron 6 of 6)	292638	NM_152447	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
4951	chr6	96531509	96531929	+	0	NA	intron (NM_006581, intron 1 of 2)	L3|LINE|CR1	67874	NM_006581	10690	Hs.49117	NM_006581	ENSG00000172461	FUT9	Fuc-TIX	fucosyltransferase 9	protein-coding
1405	chr12	128113756	128113892	+	0	NA	Intergenic	Intergenic	7188	NR_120451	101927637	Hs.170413	NR_120451	ENSG00000256022	LOC101927637	-	uncharacterized LOC101927637	ncRNA
3118	chr2	89867908	89867940	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	756040	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
4442	chr5	38540694	38540783	+	0	NA	intron (NM_002310, intron 1 of 19)	MER102b|DNA|hAT-Charlie	16010	NM_001127671	3977	Hs.133421	NM_002310	ENSG00000113594	LIFR	CD118|LIF-R|SJS2|STWS|SWS	leukemia inhibitory factor receptor alpha	protein-coding
5161	chr7	28395180	28395216	+	0	NA	intron (NM_182899, intron 1 of 9)	intron (NM_182899, intron 1 of 9)	56258	NM_182899	9586	Hs.437075	NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5	cAMP responsive element binding protein 5	protein-coding
5822	chr8	143144120	143144755	+	0	NA	Intergenic	Intergenic	-64780	NR_130468	100616374		NR_130468	ENSG00000265612	MIR4539	-	microRNA 4539	ncRNA
4141	chr4	49119651	49123474	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	132903	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
5212	chr7	55195616	55195850	+	0	NA	intron (NM_001346900, intron 1 of 27)	intron (NM_001346900, intron 1 of 27)	18223	NM_001346900	1956	Hs.488293	NM_005228	ENSG00000146648	EGFR	ERBB|ERBB1|HER1|NISBD2|PIG61|mENA	epidermal growth factor receptor	protein-coding
6313	chrX	61839151	61839402	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	731942	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
1729	chr14	54810348	54810624	+	0	NA	Intergenic	Intergenic	-53100	NM_001330173	1033	Hs.84113	NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
5343	chr7	86476405	86476705	+	0	NA	intron (NM_000840, intron 4 of 5)	LTR40b|LTR|ERVL	118736	NM_152748	222223	Hs.208093	NM_152748	ENSG00000164659	KIAA1324L	EIG121L	KIAA1324 like	protein-coding
146	chr1	59543246	59543652	+	0	NA	intron (NR_110626, intron 2 of 2)	MIRb|SINE|MIR	57301	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
3202	chr2	100124887	100125135	+	0	NA	Intergenic	AluSx|SINE|Alu	-18493	NR_135650	51455	Hs.443077	NM_016316	ENSG00000135945	REV1	AIBP80|REV1L	REV1, DNA directed polymerase	protein-coding
1351	chr12	116323459	116323941	+	0	NA	Intergenic	Intergenic	262759	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
356	chr1	174924150	174924440	+	0	NA	promoter-TSS (NR_121196)	promoter-TSS (NR_121196)	-897	NR_121196	101928696	Hs.666680	NR_121196	ENSG00000229531	LOC101928696	-	uncharacterized LOC101928696	ncRNA
2396	chr16	85591889	85592140	+	0	NA	Intergenic	Intergenic	-53015	NM_001134473	23199	Hs.461647	NM_014615	ENSG00000131149	GSE1	CRHSP24|KIAA0182	Gse1 coiled-coil protein	protein-coding
2720	chr18	47337841	47337989	+	0	NA	intron (NM_006111, intron 1 of 9)	intron (NM_006111, intron 1 of 9)	2336	NM_006111	10449	Hs.200136	NM_006111	ENSG00000167315	ACAA2	DSAEC	acetyl-CoA acyltransferase 2	protein-coding
5377	chr7	107657788	107658347	+	0	NA	Intergenic	Intergenic	-14263	NM_002291	3912	Hs.650585	NM_002291	ENSG00000091136	LAMB1	CLM|LIS5	laminin subunit beta 1	protein-coding
528	chr10	23201314	23201445	+	0	NA	Intergenic	Intergenic	-15574	NM_001282746	219681	Hs.659807	NM_173081	ENSG00000165309	ARMC3	CT81|KU-CT-1	armadillo repeat containing 3	protein-coding
164	chr1	62850661	62850673	+	0	NA	Intergenic	Intergenic	-51308	NM_001017415	7398	Hs.35086	NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
4325	chr4	140797068	140797074	+	0	NA	intron (NM_018717, intron 3 of 5)	(A)n|Simple_repeat|Simple_repeat	210149	NM_002413	4258	Hs.81874	NM_002413	ENSG00000085871	MGST2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding
807	chr11	20092469	20092618	+	0	NA	intron (NM_001111019, intron 12 of 27)	L1PA7|LINE|L1	-21694	NR_046672	100874014	Hs.557916	NR_046672	ENSG00000254453	NAV2-AS2	-	NAV2 antisense RNA 2	ncRNA
3897	chr3	105370797	105370869	+	0	NA	Intergenic	Intergenic	215602	NM_001321813	868	Hs.430589	NM_170662	ENSG00000114423	CBLB	Cbl-b|Nbla00127|RNF56	Cbl proto-oncogene B	protein-coding
2040	chr15	58756162	58756361	+	0	NA	intron (NR_120338, intron 2 of 2)	intron (NR_120338, intron 2 of 2)	32086	NM_000236	3990	Hs.654472	NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
2678	chr18	40255213	40255302	+	0	NA	intron (NR_046174, intron 7 of 9)	MLT2C2|LTR|ERVL	440400	NM_001272077	6014	Hs.464985	NM_002930	ENSG00000152214	RIT2	RIBA|RIN|ROC2	Ras like without CAAX 2	protein-coding
5030	chr6	124289416	124289671	+	0	NA	intron (NM_153355, intron 1 of 5)	intron (NM_153355, intron 1 of 5)	164552	NM_001040214	154215	Hs.656604	NM_153355	ENSG00000188580	NKAIN2	FAM77B|NKAIP2|TCBA|TCBA1	Sodium/potassium transporting ATPase interacting 2	protein-coding
2898	chr2	4124506	4124931	+	0	NA	Intergenic	Intergenic	102967	NR_136322	105373394	Hs.742693	NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
5979	chr9	92302348	92302545	+	0	NA	intron (NR_024280, intron 3 of 5)	intron (NR_024280, intron 3 of 5)	47748	NR_024280	100129066	Hs.125947	NR_024280	ENSG00000237372	UNQ6494	-	uncharacterized LOC100129066	ncRNA
5560	chr8	21092045	21092117	+	0	NA	Intergenic	Intergenic	-63669	NR_104677	101929172	Hs.128668	NR_104677	ENSG00000254334	LOC101929172	-	uncharacterized LOC101929172	ncRNA
4379	chr5	301308	301757	+	0	NA	intron (NM_001267557, intron 2 of 3)	intron (NM_001267557, intron 2 of 3)	-2759	NM_020731	57491	Hs.50823	NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl-hydrocarbon receptor repressor	protein-coding
882	chr11	51580012	51581181	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	65314	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
1050	chr11	126848645	126848723	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	9754	NR_036126	100422918		NR_036126	ENSG00000266215	MIR3167	-	microRNA 3167	ncRNA
5936	chr9	70489956	70490098	+	0	NA	exon (NM_001286836, exon 1 of 3).3	exon (NM_001286836, exon 1 of 3).3	144	NM_001330668	220869	Hs.355950	NM_001024916	ENSG00000147996	CBWD5	DC36	COBW domain containing 5	protein-coding
4054	chr3	183347180	183347432	+	0	NA	Intergenic	Intergenic	-6105	NM_017644	54800	Hs.407709	NM_017644	ENSG00000114796	KLHL24	DRE1|KRIP6	kelch like family member 24	protein-coding
6162	chrUn_gl000216	22761	23014	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
1031	chr11	117344917	117345124	+	0	NA	intron (NM_020693, intron 14 of 32)	L2c|LINE|L2	146449	NM_014956	22897	Hs.504009	NM_014956	ENSG00000110274	CEP164	NPHP15	centrosomal protein 164	protein-coding
4585	chr5	149317824	149318011	+	0	NA	intron (NM_000440, intron 1 of 21)	intron (NM_000440, intron 1 of 21)	-5377	NR_110534	644762	Hs.730366	NR_110534		LOC644762	-	mitochondrial fission factor pseudogene	pseudo
5623	chr8	43795055	43795144	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	647514	NM_001005365	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
2942	chr2	9419481	9419558	+	0	NA	intron (NM_001135191, intron 2 of 26)	intron (NM_001135191, intron 2 of 26)	72625	NM_003887	8853	Hs.555902	NM_003887	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
3401	chr2	224162306	224162430	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	245720	NM_080671	23704	Hs.348522	NM_080671	ENSG00000152049	KCNE4	MIRP3	potassium voltage-gated channel subfamily E regulatory subunit 4	protein-coding
454	chr1	214407686	214408031	+	0	NA	Intergenic	Intergenic	-46707	NM_020197	56950	Hs.66170	NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
3139	chr2	90372044	90372279	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1260277	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
1364	chr12	117549742	117549930	+	0	NA	intron (NR_120464, intron 2 of 2)	intron (NR_120464, intron 2 of 2)	12564	NR_120464	101928244	Hs.742266	NR_120464		TESC-AS1	-	TESC antisense RNA 1 (head to head)	ncRNA
2538	chr17	76390279	76390634	+	0	NA	intron (NR_110602, intron 2 of 8)	intron (NR_110602, intron 2 of 8)	15757	NM_024419	9489	Hs.654671	NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
4845	chr6	61901628	61901677	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-382356	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
634	chr10	42409451	42409460	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	454038	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
5455	chr7	130004985	130005627	+	0	NA	TTS (NR_133928)	TTS (NR_133928)	1662	NR_133928	105375504	Hs.436058	NR_133928		LOC105375504	-	uncharacterized LOC105375504	ncRNA
2551	chr18	107068	107304	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-1879	NR_033770	727758	Hs.585843	NR_033770	ENSG00000263006	ROCK1P1	-	Rho associated coiled-coil containing protein kinase 1 pseudogene 1	pseudo
4774	chr6	33332363	33332527	+	0	NA	Intergenic	AluJb|SINE|Alu	-26868	NM_002263	3833	Hs.436912	NM_002263	ENSG00000237649	KIFC1	HSET|KNSL2	kinesin family member C1	protein-coding
978	chr11	92950258	92950401	+	0	NA	Intergenic	Intergenic	-19188	NM_152313	120103	Hs.148766	NM_152313	ENSG00000180773	SLC36A4	PAT4	solute carrier family 36 member 4	protein-coding
3324	chr2	177392529	177392653	+	0	NA	Intergenic	Intergenic	73189	NR_031648	100302142		NR_031648	ENSG00000283203	MIR1246	MIRN1246|hsa-mir-1246	microRNA 1246	ncRNA
3741	chr22	16852388	16852406	+	0	NA	Intergenic	HSATII|Satellite|Satellite	221303	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
5577	chr8	28569722	28570119	+	0	NA	intron (NR_073468, intron 1 of 4)	L2b|LINE|L2	10930	NM_001440	2137	Hs.491354	NM_001440	ENSG00000012232	EXTL3	BOTV|EXTL1L|EXTR1|REGR|RPR	exostosin like glycosyltransferase 3	protein-coding
4813	chr6	51128161	51128314	+	0	NA	Intergenic	L1MC5|LINE|L1	341798	NM_003221	7021	Hs.33102	NM_003221	ENSG00000008196	TFAP2B	AP-2B|AP2-B|PDA2	transcription factor AP-2 beta	protein-coding
3752	chr22	18880036	18880366	+	0	NA	intron (NR_136571, intron 1 of 11)	HSATI|Satellite|Satellite	1743	NR_136571	100996432	Hs.631668	NR_136571		LINC01663	-	long intergenic non-protein coding RNA 1663	ncRNA
2144	chr15	101667794	101667814	+	0	NA	Intergenic	Intergenic	124333	NM_014918	22856	Hs.110488	NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
378	chr1	184823259	184823515	+	0	NA	intron (NM_052966, intron 5 of 13)	intron (NM_052966, intron 5 of 13)	-99346	NR_135118	80267	Hs.523811	NM_025191	ENSG00000116406	EDEM3	C1orf22	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
325	chr1	151253611	151253745	+	0	NA	promoter-TSS (NM_001304764)	promoter-TSS (NM_001304764)	-353	NM_001304764	57592	Hs.186756	NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
889	chr11	51583343	51583759	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	68269	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
4926	chr6	90708672	90708858	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	104577	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
5198	chr7	45881420	45881658	+	0	NA	Intergenic	L1ME2z|LINE|L1	-46420	NM_000596	3484	Hs.642938	NM_000596	ENSG00000146678	IGFBP1	AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1	insulin like growth factor binding protein 1	protein-coding
1233	chr12	92067109	92067287	+	0	NA	Intergenic	Intergenic	468291	NR_046159	256021	Hs.651357	NM_001256373	ENSG00000257242	LINC01619	C12orf79	long intergenic non-protein coding RNA 1619	ncRNA
6121	chrUn_gl000216	1102	1112	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5135	chr7	11384995	11385214	+	0	NA	Intergenic	Intergenic	371605	NR_033435	9678	Hs.655688	NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
3390	chr2	221649677	221649901	+	0	NA	Intergenic	Intergenic	787289	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
1162	chr12	34845958	34846034	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	670780	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
3972	chr3	132836449	132836603	+	0	NA	intron (NM_001136469, intron 2 of 5)	intron (NM_001136469, intron 2 of 5)	-7139	NM_001282865	66000	Hs.191616	NM_023943	ENSG00000144868	TMEM108	CT124	transmembrane protein 108	protein-coding
684	chr10	77467644	77467876	+	0	NA	intron (NR_131178, intron 1 of 7)	intron (NR_131178, intron 1 of 7)	-4453	NR_132791	105378367	Hs.464836	NR_132791		LOC105378367	-	uncharacterized LOC105378367	ncRNA
211	chr1	87666568	87666646	+	0	NA	Intergenic	Intergenic	-11745	NM_001290053	101927844	Hs.694591	NM_001290053		LOC101927844	-	uncharacterized LOC101927844	protein-coding
2831	chr19	19892547	19892649	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-5376	NR_026956	284440	Hs.665307	NR_026956		LINC00663	-	long intergenic non-protein coding RNA 663	ncRNA
6041	chr9	114736375	114736538	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	42076	NR_039814	100616114		NR_039814	ENSG00000266315	MIR4668	mir-4668	microRNA 4668	ncRNA
6188	chrUn_gl000216	79347	79360	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
3315	chr2	174096071	174096681	+	0	NA	intron (NM_016653, intron 12 of 19)	intron (NM_016653, intron 12 of 19)	50388	NR_033882	339751	Hs.570083	NR_033882	ENSG00000238133	MAP3K20-AS1	MLK7-AS1	MAP3K20 antisense RNA 1	ncRNA
5404	chr7	114678619	114678794	+	0	NA	Intergenic	Intergenic	-40306	NR_120521	102724386	Hs.352357	NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
4946	chr6	92750165	92750394	+	0	NA	Intergenic	Intergenic	-350133	NR_104154	101929083	Hs.586238	NR_104154		CASC6	-	cancer susceptibility candidate 6 (non-protein coding)	ncRNA
1924	chr14	90167103	90167195	+	0	NA	Intergenic	Intergenic	-81655	NM_001085471	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
5032	chr6	128428786	128428914	+	0	NA	intron (NM_001135648, intron 7 of 30)	intron (NM_001135648, intron 7 of 30)	79840	NR_125849	101928140	Hs.656779	NR_125849		LOC101928140	-	uncharacterized LOC101928140	ncRNA
3042	chr2	60860635	60860770	+	0	NA	Intergenic	Intergenic	-80069	NM_138559	53335	Hs.370549	NM_018014	ENSG00000119866	BCL11A	BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856	B-cell CLL/lymphoma 11A	protein-coding
5689	chr8	82555977	82556440	+	0	NA	Intergenic	Intergenic	42381	NM_005536	3612	Hs.656694	NM_005536	ENSG00000133731	IMPA1	IMP|IMPA	inositol monophosphatase 1	protein-coding
1214	chr12	68743290	68743510	+	0	NA	Intergenic	Intergenic	-17239	NM_020128	56890	Hs.655702	NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
389	chr1	187846785	187847191	+	0	NA	Intergenic	Intergenic	434228	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA
5510	chr7	147754880	147755091	+	0	NA	intron (NM_014141, intron 15 of 23)	MER4C|LTR|ERV1	128300	NR_036093	100422849		NR_036093	ENSG00000221296	MIR548T	-	microRNA 548t	ncRNA
1660	chr14	30969722	30970039	+	0	NA	Intergenic	Intergenic	-58449	NM_001308097	55632	Hs.509008	NM_017769	ENSG00000092140	G2E3	KIAA1333|PHF7B	G2/M-phase specific E3 ubiquitin protein ligase	protein-coding
3525	chr20	29811916	29812169	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-33425	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
6177	chrUn_gl000216	58673	58687	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
3207	chr2	106357408	106357594	+	0	NA	Intergenic	Intergenic	-4019	NM_003581	8440	Hs.529244	NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
3887	chr3	104318137	104318162	+	0	NA	Intergenic	Intergenic	-372044	NR_030330	693127		NR_030330	ENSG00000208032	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA
5875	chr9	14165268	14165473	+	0	NA	intron (NM_001190737, intron 3 of 10)	L1MC4|LINE|L1	15431	NM_001282787	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
966	chr11	92601001	92601537	+	0	NA	intron (NM_001008781, intron 21 of 24)	intron (NM_001008781, intron 21 of 24)	47525	NR_135091	105369431	Hs.532389	NR_135091		LOC105369431	-	uncharacterized LOC105369431	ncRNA
5146	chr7	14429839	14430032	+	0	NA	intron (NM_145695, intron 20 of 23)	intron (NM_145695, intron 20 of 23)	-398885	NM_001163148	2115	Hs.22634	NM_004956	ENSG00000006468	ETV1	ER81	ETS variant 1	protein-coding
2216	chr16	33865981	33866049	+	0	NA	Intergenic	Intergenic	96488	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
2314	chr16	52504875	52504970	+	0	NA	intron (NM_001080430, intron 1 of 6)	intron (NM_001080430, intron 1 of 6)	75884	NM_001080430	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
992	chr11	112209799	112209938	+	0	NA	intron (NR_126004, intron 2 of 3)	intron (NR_126004, intron 2 of 3)	68396	NR_126004	283140	Hs.651827	NR_126004	ENSG00000250303	LOC283140	-	uncharacterized LOC283140	ncRNA
1954	chr14	96557298	96557484	+	0	NA	3' UTR (NM_001252507, exon 2 of 2)	3' UTR (NM_001252507, exon 2 of 2)	51730	NM_001282464	56967	Hs.6434	NM_020215	ENSG00000227051	C14orf132	C14orf88	chromosome 14 open reading frame 132	protein-coding
218	chr1	90276335	90276556	+	0	NA	Intergenic	Intergenic	-10128	NM_001134479	55144	Hs.482087	NM_018103	ENSG00000171492	LRRC8D	LRRC5	leucine rich repeat containing 8 family member D	protein-coding
2843	chr19	31296819	31297049	+	0	NA	Intergenic	Intergenic	433634	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
5918	chr9	67320182	67320185	+	0	NA	intron (NR_136300, intron 3 of 3)	ALR/Alpha|Satellite|centr	29732	NR_136300	102724580	Hs.494013	NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene	pseudo
2345	chr16	67816629	67816937	+	0	NA	intron (NM_001320238, intron 1 of 12)	intron (NM_001320238, intron 1 of 12)	23772	NM_020850	57610	Hs.368569	NM_020850	ENSG00000141084	RANBP10	-	RAN binding protein 10	protein-coding
3124	chr2	89869674	89870332	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	758119	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
5418	chr7	125416119	125416676	+	0	NA	Intergenic	Intergenic	-512052	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
5261	chr7	61800747	61801294	+	0	NA	Intergenic	HSATII|Satellite|Satellite	963414	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
3391	chr2	221649902	221649980	+	0	NA	Intergenic	Intergenic	787137	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
2973	chr2	37047844	37048467	+	0	NA	Intergenic	Intergenic	124322	NM_001177969	5212	Hs.137415	NM_053276	ENSG00000205221	VIT	-	vitrin	protein-coding
5473	chr7	135708201	135708581	+	0	NA	Intergenic	Intergenic	-46187	NM_001128619	767558	Hs.602015	NM_001128619	ENSG00000267697	LUZP6	MPD6|MTPNUT	leucine zipper protein 6	protein-coding
4602	chr5	154773717	154773775	+	0	NA	Intergenic	Intergenic	380431	NM_001099293	285643	Hs.567824	NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding
2567	chr18	3716053	3716685	+	0	NA	intron (NM_001308390, intron 4 of 10)	AluJr|SINE|Alu	112634	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
2999	chr2	45486125	45486284	+	0	NA	Intergenic	Intergenic	-4124	NR_033831	400952	Hs.468368	NR_033831	ENSG00000205054	LINC01121	UNQ6975	long intergenic non-protein coding RNA 1121	ncRNA
4321	chr4	139831522	139832022	+	0	NA	intron (NR_133945, intron 2 of 2)	intron (NR_133945, intron 2 of 2)	102028	NR_133945	105377448	Hs.200280	NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
6052	chr9	124106902	124106927	+	0	NA	intron (NM_198194, intron 2 of 2)	intron (NM_198194, intron 2 of 2)	25668	NR_073037	2040	Hs.253903	NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
3289	chr2	161329378	161329475	+	0	NA	intron (NM_002897, intron 1 of 13)	intron (NM_002897, intron 1 of 13)	20892	NM_016836	5937	Hs.470412	NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
3158	chr2	91596631	91597137	+	0	NA	Intergenic	HSATII|Satellite|Satellite	251091	NR_027238	654342	Hs.469287	NR_027238		LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
5685	chr8	82505083	82505310	+	0	NA	Intergenic	Intergenic	-61571	NM_001105281	646486	Hs.586370	NM_001105281	ENSG00000197416	FABP12	-	fatty acid binding protein 12	protein-coding
2188	chr16	19256498	19256802	+	0	NA	intron (NM_001330509, intron 7 of 7)	MER20|DNA|hAT-Charlie	-40455	NM_001256720	728276	Hs.632180	NM_001256720	ENSG00000261210	CLEC19A	-	C-type lectin domain family 19 member A	protein-coding
2767	chr18	57043684	57043932	+	0	NA	Intergenic	Intergenic	-17300	NM_005570	3998	Hs.465295	NM_005570	ENSG00000074695	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	lectin, mannose binding 1	protein-coding
1778	chr14	65697453	65697752	+	0	NA	Intergenic	L1MA5|LINE|L1	-8537	NR_103769	100128233	Hs.497323	NR_103769	ENSG00000255002	LOC100128233	-	uncharacterized LOC100128233	ncRNA
3667	chr21	34814850	34814975	+	0	NA	intron (NR_040016, intron 7 of 8)	intron (NR_040016, intron 7 of 8)	37404	NR_040016	757	Hs.433668	NM_006134	ENSG00000142188	TMEM50B	C21orf4|HCVP7TP3	transmembrane protein 50B	protein-coding
1859	chr14	78348589	78349290	+	0	NA	intron (NM_020421, intron 4 of 10)	intron (NM_020421, intron 4 of 10)	82513	NM_020421	57143	Hs.413208	NM_020421	ENSG00000063761	ADCK1	-	aarF domain containing kinase 1	protein-coding
2339	chr16	67397081	67397393	+	0	NA	intron (NM_018296, intron 5 of 13)	MIRc|SINE|MIR	15979	NM_001161575	55282	Hs.125139	NM_018296	ENSG00000159708	LRRC36	RORBP70|XLHSRF2	leucine rich repeat containing 36	protein-coding
5986	chr9	92806967	92807302	+	0	NA	Intergenic	Intergenic	-3353	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
160	chr1	62850124	62850414	+	0	NA	Intergenic	MSTA|LTR|ERVL-MaLR	-51706	NM_001017415	7398	Hs.35086	NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
3782	chr22	29330193	29330231	+	0	NA	intron (NM_032173, intron 1 of 8)	intron (NM_032173, intron 1 of 8)	16835	NM_032173	84133	Hs.604200	NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
98	chr1	40311066	40311647	+	0	NA	intron (NR_132413, intron 1 of 3)	intron (NR_132413, intron 1 of 3)	37827	NM_001312691	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
1278	chr12	101861039	101861276	+	0	NA	Intergenic	Intergenic	-8042	NM_152323	121599	Hs.577097	NM_152323	ENSG00000166211	SPIC	SPI-C	Spi-C transcription factor	protein-coding
1048	chr11	126762616	126762764	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	-47952	NR_046986	100874251	Hs.319053	NR_046986	ENSG00000254960	KIRREL3-AS2	-	KIRREL3 antisense RNA 2	ncRNA
2901	chr2	4320080	4320203	+	0	NA	Intergenic	Intergenic	298390	NR_136322	105373394	Hs.742693	NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
2434	chr17	25265483	25265515	+	0	NA	Intergenic	AluSz6|SINE|Alu	150768	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
1381	chr12	119807822	119808035	+	0	NA	intron (NM_178499, intron 1 of 13)	intron (NM_178499, intron 1 of 13)	35411	NM_178499	160777	Hs.98188	NM_178499	ENSG00000183273	CCDC60	-	coiled-coil domain containing 60	protein-coding
1061	chr11	127510737	127510866	+	0	NA	Intergenic	Intergenic	369836	NR_120580	101929497	Hs.737442	NR_120580	ENSG00000273409	LOC101929497	-	uncharacterized LOC101929497	ncRNA
5039	chr6	134997130	134997333	+	0	NA	Intergenic	MIRc|SINE|MIR	-136088	NR_125855	101928304	Hs.555076	NR_125855		LOC101928304	-	uncharacterized LOC101928304	ncRNA
2054	chr15	60847640	60847825	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	36975	NM_134262	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
3792	chr22	36232541	36232586	+	0	NA	intron (NM_001082578, intron 2 of 13)	intron (NM_001082578, intron 2 of 13)	4067	NM_001082577	23543	Hs.282998	NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding protein, fox-1 homolog 2	protein-coding
3735	chr22	16850967	16851037	+	0	NA	Intergenic	HSATII|Satellite|Satellite	222698	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
2785	chr18	65900085	65900095	+	0	NA	Intergenic	ERVL-int|LTR|ERVL	482263	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin related transmembrane protein 3	protein-coding
3224	chr2	121794206	121794233	+	0	NA	Intergenic	Intergenic	239352	NM_005270	2736	Hs.111867	NM_005270	ENSG00000074047	GLI2	CJS|HPE9|PHS2|THP1|THP2	GLI family zinc finger 2	protein-coding
3635	chr21	10834030	10834032	+	0	NA	Intergenic	Intergenic	156912	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
3732	chr22	16850320	16850650	+	0	NA	Intergenic	HSATII|Satellite|Satellite	223215	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
4921	chr6	90687156	90687468	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	83124	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
1555	chr13	101136043	101136242	+	0	NA	intron (NM_001178004, intron 21 of 22)	intron (NM_001178004, intron 21 of 22)	-2873	NR_047686	100885777	Hs.662554	NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
586	chr10	39081441	39081554	+	0	NA	Intergenic	Intergenic	91770	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
2870	chr19	51550418	51550520	+	0	NA	Intergenic	Intergenic	-12321	NM_145895	43849	Hs.411572	NM_019598	ENSG00000186474	KLK12	KLK-L5|KLKL5	kallikrein related peptidase 12	protein-coding
4337	chr4	151086035	151086291	+	0	NA	intron (NM_001040260, intron 2 of 15)	intron (NM_001040260, intron 2 of 15)	86737	NR_036614	166614	Hs.591683	NM_152619	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin like kinase 2	protein-coding
410	chr1	204283532	204283993	+	0	NA	intron (NM_014935, intron 1 of 22)	intron (NM_014935, intron 1 of 22)	45295	NM_014935	22874	Hs.253146	NM_014935	ENSG00000143850	PLEKHA6	PEPP-3|PEPP3	pleckstrin homology domain containing A6	protein-coding
2859	chr19	49042868	49042954	+	0	NA	Intergenic	MIR|SINE|MIR	-12518	NM_177973	6820	Hs.369331	NM_004605	ENSG00000088002	SULT2B1	HSST2	sulfotransferase family 2B member 1	protein-coding
999	chr11	112885644	112885785	+	0	NA	intron (NM_001076682, intron 2 of 19)	intron (NM_001076682, intron 2 of 19)	-51532	NR_120563	101928847	Hs.711235	NR_120563	ENSG00000247416	LOC101928847	-	uncharacterized LOC101928847	ncRNA
3193	chr2	99486257	99486829	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	66141	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211 like	protein-coding
3019	chr2	51048873	51049186	+	0	NA	intron (NM_001135659, intron 5 of 23)	intron (NM_001135659, intron 5 of 23)	-125629	NR_130470	103504737		NR_130470	ENSG00000216191	MIR8485	hsa-mir-8485	microRNA 8485	ncRNA
6286	chrX	58581980	58582011	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-644928	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger, X-linked, duplicated A	protein-coding
1185	chr12	42313702	42314728	+	0	NA	Intergenic	Intergenic	156224	NR_135040	101927038	Hs.98588	NR_135040	ENSG00000257784	LOC101927038	-	uncharacterized LOC101927038	ncRNA
2169	chr16	9241628	9241652	+	0	NA	Intergenic	MER1A|DNA|hAT-Charlie	56103	NM_014117	29035	Hs.221497	NM_014117	ENSG00000182831	C16orf72	PRO0149	chromosome 16 open reading frame 72	protein-coding
4637	chr6	3209474	3209793	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-13632	NR_038295	100507194	Hs.678053	NR_038295	ENSG00000230269	LOC100507194	-	uncharacterized LOC100507194	ncRNA
1741	chr14	59165403	59165645	+	0	NA	Intergenic	Intergenic	59969	NR_046095	51339	Hs.48950	NM_016651	ENSG00000165617	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3	dishevelled binding antagonist of beta catenin 1	protein-coding
4211	chr4	49653356	49654582	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	665310	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
1315	chr12	106100717	106100968	+	0	NA	intron (NR_110111, intron 1 of 1)	intron (NR_110111, intron 1 of 1)	290	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
1130	chr12	18318547	18318862	+	0	NA	Intergenic	MER57-int|LTR|ERV1	-75577	NM_024730	79785	Hs.732831	NM_024730	ENSG00000111404	RERGL	-	RERG like	protein-coding
4599	chr5	153866244	153866387	+	0	NA	Intergenic	Intergenic	-8491	NM_004821	9421	Hs.152531	NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
189	chr1	82315035	82315177	+	0	NA	intron (NM_001330645, intron 2 of 20)	intron (NM_001330645, intron 2 of 20)	49024	NM_012302	23266	Hs.24212	NM_012302	ENSG00000117114	ADGRL2	CIRL2|CL2|LEC1|LPHH1|LPHN2	adhesion G protein-coupled receptor L2	protein-coding
6216	chrUn_gl000225	13538	13562	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
4918	chr6	90684336	90684437	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	80198	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
2330	chr16	53984620	53984860	+	0	NA	intron (NM_001080432, intron 8 of 8)	intron (NM_001080432, intron 8 of 8)	-88565	NR_103838	100505692		NR_103838		FTO-IT1	-	FTO intronic transcript 1	ncRNA
2849	chr19	44032056	44032142	+	0	NA	promoter-TSS (NM_001320867)	promoter-TSS (NM_001320867)	-691	NM_001320867	23474	Hs.7486	NM_014297	ENSG00000105755	ETHE1	HSCO|YF13H12	ETHE1, persulfide dioxygenase	protein-coding
480	chr1	224201239	224201245	+	0	NA	intron (NR_136593, intron 2 of 4)	(GAATG)n|Satellite|Satellite	20810	NR_136593	100287497	Hs.568390	NR_136590		LOC100287497	-	septin 7 pseudogene	pseudo
6169	chrUn_gl000216	31049	31187	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
107	chr1	42806502	42806593	+	0	NA	Intergenic	Intergenic	-4999	NM_001198850	22887	Hs.26023	NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
3810	chr22	43843709	43843770	+	0	NA	intron (NM_001044370, intron 3 of 6)	(TA)n|Simple_repeat|Simple_repeat	35719	NM_001044370	758	Hs.159538	NM_001044370	ENSG00000186732	MPPED1	239AB|C22orf1|FAM1A	metallophosphoesterase domain containing 1	protein-coding
87	chr1	38528993	38529180	+	0	NA	Intergenic	AluSq2|SINE|Alu	-16636	NM_002699	5453	Hs.1837	NM_002699	ENSG00000185668	POU3F1	OCT6|OTF6|SCIP	POU class 3 homeobox 1	protein-coding
2385	chr16	83081940	83082249	+	0	NA	intron (NM_001220489, intron 3 of 12)	intron (NM_001220489, intron 3 of 12)	-58191	NR_110937	101928417	Hs.569538	NR_110937	ENSG00000260832	LOC101928417	-	uncharacterized LOC101928417	ncRNA
4099	chr4	16124820	16125449	+	0	NA	Intergenic	Intergenic	-39511	NM_001145848	8842	Hs.614734	NM_006017	ENSG00000007062	PROM1	AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4	prominin 1	protein-coding
4339	chr4	151086532	151086782	+	0	NA	intron (NM_001040260, intron 2 of 15)	intron (NM_001040260, intron 2 of 15)	87231	NR_036614	166614	Hs.591683	NM_152619	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin like kinase 2	protein-coding
1832	chr14	74607390	74607401	+	0	NA	intron (NM_001024674, intron 5 of 5)	intron (NM_001024674, intron 5 of 5)	55739	NM_001024674	91750	Hs.612866	NM_001024674	ENSG00000205659	LIN52	C14orf46|c14_5549	lin-52 DREAM MuvB core complex component	protein-coding
6392	chrY	13704245	13704306	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	829114	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
6191	chrUn_gl000216	79511	79590	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
2704	chr18	45490521	45490923	+	0	NA	Intergenic	Intergenic	-33205	NM_001003652	4087	Hs.12253	NM_005901	ENSG00000175387	SMAD2	JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2	SMAD family member 2	protein-coding
3796	chr22	37431794	37431932	+	0	NA	Intergenic	AluSq|SINE|Alu	-15639	NM_001270483	7263	Hs.474783	NM_003312	ENSG00000128311	TST	RDS	thiosulfate sulfurtransferase	protein-coding
5946	chr9	72611982	72612158	+	0	NA	Intergenic	MIR3|SINE|MIR	-46427	NM_001347990	256691	Hs.547172	NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding
221	chr1	95818598	95818765	+	0	NA	Intergenic	MIRc|SINE|MIR	-34862	NR_135588	100996630	Hs.662270	NR_135588	ENSG00000228504	LINC01760	-	long intergenic non-protein coding RNA 1760	ncRNA
3147	chr2	90373537	90373716	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1261742	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
4486	chr5	72578659	72578854	+	0	NA	Intergenic	Intergenic	-80968	NR_134291	340090	Hs.434311	NR_134291		LOC340090	-	uncharacterized LOC340090	ncRNA
1424	chr13	22237192	22237444	+	0	NA	Intergenic	MSTB2|LTR|ERVL-MaLR	-7897	NM_002010	2254	Hs.111	NM_002010	ENSG00000102678	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
3176	chr2	92295245	92295296	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	166111	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
417	chr1	206723668	206723738	+	0	NA	intron (NM_182664, intron 2 of 4)	L2b|LINE|L2	-6789	NM_182665	83593	Hs.497579	NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
6198	chrUn_gl000216	145022	145597	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
5772	chr8	109952030	109952280	+	0	NA	Intergenic	L1ME3C|LINE|L1	-147498	NM_003301	7201	Hs.3022	NM_003301	ENSG00000174417	TRHR	TRH-R	thyrotropin releasing hormone receptor	protein-coding
4623	chr5	175610861	175611043	+	0	NA	intron (NR_036494, intron 4 of 25)	MER101-int|LTR|ERV1	15346	NR_036494	643201	Hs.390285	NR_036494	ENSG00000248596	LOC643201	-	centrosomal protein 192kDa pseudogene	pseudo
4547	chr5	131763744	131764041	+	0	NA	intron (NR_045116, intron 2 of 3)	intron (NR_045116, intron 2 of 3)	17427	NR_045116	441108	Hs.658288	NM_001013717	ENSG00000197536	C5orf56	-	chromosome 5 open reading frame 56	ncRNA
1530	chr13	96182849	96183027	+	0	NA	intron (NR_046533, intron 1 of 3)	intron (NR_046533, intron 1 of 3)	3226	NR_046533	100874194	Hs.569229	NR_046533	ENSG00000223392	CLDN10-AS1	-	CLDN10 antisense RNA 1	ncRNA
5246	chr7	61783894	61783909	+	0	NA	Intergenic	HSATII|Satellite|Satellite	980533	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
4388	chr5	1604008	1604684	+	0	NA	intron (NR_003713, intron 2 of 3)	intron (NR_003713, intron 2 of 3)	-9700	NR_003263	728609	Hs.379186	NR_003263		SDHAP3	SDHACL|SDHAL	succinate dehydrogenase complex flavoprotein subunit A pseudogene 3	pseudo
2504	chr17	57591589	57591759	+	0	NA	intron (NR_110813, intron 1 of 2)	intron (NR_110813, intron 1 of 2)	12544	NR_110813	101927728	Hs.569720	NR_110813	ENSG00000265313	LINC01476	-	long intergenic non-protein coding RNA 1476	ncRNA
3819	chr3	2003962	2004145	+	0	NA	Intergenic	Intergenic	-136497	NM_175607	152330	Hs.298705	NM_175607	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
5912	chr9	66835961	66835969	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-87002	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
734	chr10	105308818	105308979	+	0	NA	intron (NM_004210, intron 1 of 5)	intron (NM_004210, intron 1 of 5)	-31699	NR_120675	102724341	Hs.599425	NR_120675	ENSG00000235470	NEURL1-AS1	-	NEURL1 antisense RNA 1	ncRNA
2798	chr18	75898888	75898904	+	0	NA	Intergenic	Intergenic	-193213	NR_104127	101927715	Hs.385670	NR_104127		LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
2952	chr2	12006258	12006583	+	0	NA	Intergenic	LTR16A1|LTR|ERVL	-29308	NR_036226	100422996		NR_036226	ENSG00000265172	MIR4262	-	microRNA 4262	ncRNA
2621	chr18	26740476	26740634	+	0	NA	Intergenic	Intergenic	-983145	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
3724	chr21	43882930	43883087	+	0	NA	Intergenic	Intergenic	33456	NM_001286506	89765	Hs.661069	NM_080860	ENSG00000160188	RSPH1	CT79|RSP44|RSPH10A|TSA2|TSGA2	radial spoke head 1 homolog	protein-coding
1440	chr13	31182256	31182448	+	0	NA	intron (NM_001313893, intron 1 of 4)	MLT1F|LTR|ERVL-MaLR	9382	NM_001313893	3146	Hs.434102	NM_002128	ENSG00000189403	HMGB1	HMG-1|HMG1|HMG3|SBP-1	high mobility group box 1	protein-coding
2524	chr17	72007861	72008117	+	0	NA	Intergenic	Intergenic	-183313	NR_027146	283982	Hs.464079	NM_182564		LINC00469	C17orf54	long intergenic non-protein coding RNA 469	ncRNA
381	chr1	184874723	184874894	+	0	NA	intron (NM_052966, intron 1 of 13)	intron (NM_052966, intron 1 of 13)	68910	NM_052966	116496	Hs.518662	NM_052966	ENSG00000135842	FAM129A	C1orf24|GIG39|NIBAN	family with sequence similarity 129 member A	protein-coding
5806	chr8	135252784	135253452	+	0	NA	Intergenic	Intergenic	354379	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
1471	chr13	40342554	40342653	+	0	NA	intron (NM_001145079, intron 18 of 18)	intron (NM_001145079, intron 18 of 18)	-104331	NR_036190	100422940		NR_036190	ENSG00000264171	MIR4305	-	microRNA 4305	ncRNA
5020	chr6	111972846	111973021	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-45456	NM_147686	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
1814	chr14	70180696	70180762	+	0	NA	3' UTR (NM_014734, exon 6 of 6)	3' UTR (NM_014734, exon 6 of 6)	-53075	NM_006925	6430	Hs.632326	NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
5340	chr7	84630282	84630420	+	0	NA	intron (NM_152754, intron 16 of 16)	intron (NM_152754, intron 16 of 16)	120896	NM_152754	223117	Hs.201340	NM_152754	ENSG00000153993	SEMA3D	Sema-Z2|coll-2	semaphorin 3D	protein-coding
5896	chr9	66823722	66823900	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-99156	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
2966	chr2	27712776	27713151	+	0	NA	promoter-TSS (NM_015662)	promoter-TSS (NM_015662)	-285	NM_015662	26160	Hs.127401	NM_015662	ENSG00000138002	IFT172	BBS20|NPHP17|RP71|SLB|SRTD10|osm-1|wim	intraflagellar transport 172	protein-coding
5694	chr8	85165758	85166243	+	0	NA	intron (NM_001100391, intron 1 of 8)	intron (NM_001100391, intron 1 of 8)	68900	NM_001100391	138046	Hs.121663	NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
4330	chr4	140926974	140927073	+	0	NA	intron (NM_018717, intron 1 of 5)	intron (NM_018717, intron 1 of 5)	148210	NM_018717	55534	Hs.586165	NM_018717	ENSG00000196782	MAML3	CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3	mastermind like transcriptional coactivator 3	protein-coding
5385	chr7	107992203	107992508	+	0	NA	intron (NM_005010, intron 2 of 27)	intron (NM_005010, intron 2 of 27)	104486	NM_001193584	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
373	chr1	182672328	182672388	+	0	NA	Intergenic	Intergenic	-30291	NM_001102450	85397	Hs.20982	NM_033345	ENSG00000135824	RGS8	-	regulator of G-protein signaling 8	protein-coding
3379	chr2	213019004	213019213	+	0	NA	intron (NM_005235, intron 1 of 27)	intron (NM_005235, intron 1 of 27)	271976	NR_031643	100313771		NR_031643	ENSG00000221782	MIR548F2	MIR548F-2|MIRN548F2|hsa-mir-548f-2	microRNA 548f-2	ncRNA
2078	chr15	69887441	69887755	+	0	NA	intron (NR_126438, intron 1 of 3)	intron (NR_126438, intron 1 of 3)	3059	NR_126437	104472713	Hs.430824	NR_126437	ENSG00000259641	PCAT29	-	prostate cancer associated transcript 29 (non-protein coding)	ncRNA
5609	chr8	43095799	43095803	+	0	NA	Intergenic	SAR|Satellite|Satellite	-51784	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
5359	chr7	95424002	95424281	+	0	NA	intron (NM_001278422, intron 1 of 15)	intron (NM_001278422, intron 1 of 15)	22323	NM_001135556	1780	Hs.440364	NM_004411	ENSG00000158560	DYNC1I1	DNCI1|DNCIC1	dynein cytoplasmic 1 intermediate chain 1	protein-coding
773	chr11	13001840	13002240	+	0	NA	non-coding (NR_038904, exon 2 of 2)	non-coding (NR_038904, exon 2 of 2)	9055	NR_038904	100506305	Hs.153408	NR_038904	ENSG00000251381	LINC00958	-	long intergenic non-protein coding RNA 958	ncRNA
1247	chr12	94221835	94221964	+	0	NA	intron (NM_001320100, intron 2 of 2)	L1ME1|LINE|L1	-90300	NR_110092	101928731	Hs.659971	NR_110092	ENSG00000258274	LOC101928731	-	uncharacterized LOC101928731	ncRNA
6148	chrUn_gl000216	14900	15263	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
1752	chr14	61532745	61532773	+	0	NA	intron (NM_001172702, intron 15 of 16)	intron (NM_001172702, intron 15 of 16)	84794	NR_033344	145389	Hs.200738	NM_153811	ENSG00000139974	SLC38A6	NAT-1|SNAT6	solute carrier family 38 member 6	protein-coding
1309	chr12	105171615	105171866	+	0	NA	Intergenic	Intergenic	150732	NM_032148	84102	Hs.577463	NM_032148	ENSG00000136052	SLC41A2	SLC41A1-L1	solute carrier family 41 member 2	protein-coding
1576	chr13	103968136	103968502	+	0	NA	Intergenic	Intergenic	-109231	NR_126374	104326190	Hs.334381	NR_126374	ENSG00000234551	LINC01309	TCONS_l2_00007459	long intergenic non-protein coding RNA 1309	ncRNA
3448	chr2	238634844	238634988	+	0	NA	intron (NM_001137550, intron 7 of 23)	intron (NM_001137550, intron 7 of 23)	34109	NM_001137553	9208	Hs.471779	NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
6136	chrUn_gl000216	9360	9476	+	0	NA	NA	Intergenic	NA	NA								
4508	chr5	102004301	102004624	+	0	NA	intron (NR_103753, intron 1 of 2)	intron (NR_103753, intron 1 of 2)	2706	NR_103756	285708	Hs.533011	NR_103753		LINC00491	-	long intergenic non-protein coding RNA 491	ncRNA
5091	chr6	168548416	168548661	+	0	NA	Intergenic	Tigger4|DNA|TcMar-Tigger	-66301	NR_110312	79981	Hs.266746	NM_024919	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
5352	chr7	95207565	95207695	+	0	NA	Intergenic	Intergenic	18295	NM_002612	5166	Hs.8364	NM_002612	ENSG00000004799	PDK4	-	pyruvate dehydrogenase kinase 4	protein-coding
2874	chr19_gl000208_random	503	596	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
1622	chr13	113870691	113870990	+	0	NA	intron (NM_001008895, intron 2 of 19)	intron (NM_001008895, intron 2 of 19)	7021	NM_001008895	8451	Hs.339735	NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
6064	chr9	129182837	129183285	+	0	NA	intron (NM_033446, intron 6 of 9)	AluSx|SINE|Alu	-10278	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	non-protein coding RNA, repressor of NFAT	ncRNA
6255	chrX	9079423	9079680	+	0	NA	Intergenic	L1MA8|LINE|L1	-77383	NM_205849	171483	Hs.733351	NM_173696	ENSG00000177138	FAM9B	TEX39B	family with sequence similarity 9 member B	protein-coding
3685	chr21	37052047	37052153	+	0	NA	Intergenic	L3|LINE|CR1	-40913	NR_030414	768219		NR_030414	ENSG00000211590	MIR802	MIRN802|hsa-mir-802	microRNA 802	ncRNA
4457	chr5	49439707	49439877	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	297442	NM_198449	133418	Hs.561411	NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
975	chr11	92949307	92949612	+	0	NA	Intergenic	Intergenic	-18318	NM_152313	120103	Hs.148766	NM_152313	ENSG00000180773	SLC36A4	PAT4	solute carrier family 36 member 4	protein-coding
3605	chr21	10763459	10764878	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	226775	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
6250	chrX	7532670	7532700	+	0	NA	Intergenic	Intergenic	-277618	NM_013452	26609	Hs.278906	NM_013452	ENSG00000182583	VCX	VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1	variable charge, X-linked	protein-coding
5271	chr7	64500577	64500719	+	0	NA	intron (NR_033416, intron 1 of 10)	intron (NR_033416, intron 1 of 10)	1916	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	chaperonin containing TCP1 subunit 6 pseudogene 3	pseudo
1911	chr14	89633444	89633965	+	0	NA	intron (NM_001085471, intron 6 of 6)	intron (NM_001085471, intron 6 of 6)	249750	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
6021	chr9	100864280	100864498	+	0	NA	intron (NM_014788, intron 2 of 5)	MER83C|LTR|ERV1	17246	NM_033219	9830	Hs.575631	NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
5753	chr8	103137510	103137679	+	0	NA	promoter-TSS (NR_049859)	promoter-TSS (NR_049859)	-66	NR_049859	100847001		NR_049859	ENSG00000266756	MIR5680	-	microRNA 5680	ncRNA
2856	chr19	47448187	47448321	+	0	NA	intron (NM_004491, intron 2 of 5)	intron (NM_004491, intron 2 of 5)	26321	NM_004491	2909	Hs.509447	NM_004491	ENSG00000160007	ARHGAP35	GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP	Rho GTPase activating protein 35	protein-coding
2199	chr16	23290764	23291158	+	0	NA	Intergenic	Intergenic	-22630	NM_000336	6338	Hs.414614	NM_000336	ENSG00000168447	SCNN1B	BESC1|ENaCb|ENaCbeta|SCNEB	sodium channel epithelial 1 beta subunit	protein-coding
5004	chr6	110138238	110138376	+	0	NA	intron (NM_014845, intron 22 of 22)	intron (NM_014845, intron 22 of 22)	-63888	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
3709	chr21	40357726	40357786	+	0	NA	Intergenic	Intergenic	-8056	NR_109962	101928435	Hs.385528	NR_109962	ENSG00000232837	LINC01700	-	long intergenic non-protein coding RNA 1700	ncRNA
6352	chrY	13140929	13140929	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1392460	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3002	chr2	46118740	46119518	+	0	NA	intron (NM_005400, intron 2 of 14)	intron (NM_005400, intron 2 of 14)	240086	NM_005400	5581	Hs.580351	NM_005400	ENSG00000171132	PRKCE	PKCE|nPKC-epsilon	protein kinase C epsilon	protein-coding
4173	chr4	49146899	49148916	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	159248	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3113	chr2	89866636	89866638	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	754753	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
6084	chr9_gl000199_random	31225	31231	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
6427	chrY	13838413	13838615	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	694875	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1893	chr14	85340907	85340929	+	0	NA	Intergenic	Intergenic	-512701	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
1646	chr14	28464801	28465103	+	0	NA	Intergenic	Intergenic	-362468	NR_130461	100422830		NR_130461	ENSG00000264657	MIR3171	-	microRNA 3171	ncRNA
3010	chr2	48960482	48960863	+	0	NA	intron (NM_000233, intron 1 of 10)	intron (NM_000233, intron 1 of 10)	22208	NM_000233	3973	Hs.468490	NM_000233	ENSG00000138039	LHCGR	HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5	luteinizing hormone/choriogonadotropin receptor	protein-coding
746	chr10	126381864	126382047	+	0	NA	intron (NM_014661, intron 3 of 4)	AluSc|SINE|Alu	-10642	NR_120631	101927944	Hs.437448	NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
534	chr10	29265067	29265182	+	0	NA	Intergenic	Intergenic	129787	NM_001278522	283080		NM_001278522		C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
3572	chr20	46772144	46772562	+	0	NA	Intergenic	Intergenic	-153492	NR_110027	101927457	Hs.445823	NR_110027		LINC01522	-	long intergenic non-protein coding RNA 1522	ncRNA
5701	chr8	91336733	91336910	+	0	NA	intron (NR_051989, intron 2 of 3)	intron (NR_051989, intron 2 of 3)	103105	NR_051989	100874052	Hs.571514	NR_051989	ENSG00000253394	LINC00534	-	long intergenic non-protein coding RNA 534	ncRNA
4286	chr4	100675898	100676675	+	0	NA	Intergenic	L2b|LINE|L2	-61695	NM_014395	27071	Hs.436271	NM_014395	ENSG00000070190	DAPP1	BAM32	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein-coding
3690	chr21	37069971	37070027	+	0	NA	Intergenic	Intergenic	-23014	NR_030414	768219		NR_030414	ENSG00000211590	MIR802	MIRN802|hsa-mir-802	microRNA 802	ncRNA
744	chr10	119941177	119941252	+	0	NA	intron (NR_026940, intron 3 of 3)	(GAATG)n|Simple_repeat|Simple_repeat	-134819	NM_001330167	22841	Hs.173656	NM_014904	ENSG00000107560	RAB11FIP2	Rab11-FIP2|nRip11	RAB11 family interacting protein 2	protein-coding
151	chr1	59971329	59971516	+	0	NA	intron (NM_001244714, intron 4 of 13)	intron (NM_001244714, intron 4 of 13)	-9879	NM_001278224	55277	Hs.444301	NM_018291	ENSG00000172456	FGGY	-	FGGY carbohydrate kinase domain containing	protein-coding
3822	chr3	2004357	2004626	+	0	NA	Intergenic	Intergenic	-136059	NM_175607	152330	Hs.298705	NM_175607	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
5347	chr7	91066255	91066390	+	0	NA	Intergenic	Intergenic	172539	NM_003505	8321	Hs.94234	NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
5485	chr7	139905070	139905206	+	0	NA	Intergenic	Intergenic	28077	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	JHDM1D-AS1	-	JHDM1D antisense RNA 1 (head to head)	ncRNA
1952	chr14	96556520	96556920	+	0	NA	3' UTR (NM_001252507, exon 2 of 2)	3' UTR (NM_001252507, exon 2 of 2)	51059	NM_001282464	56967	Hs.6434	NM_020215	ENSG00000227051	C14orf132	C14orf88	chromosome 14 open reading frame 132	protein-coding
4562	chr5	136710116	136710492	+	0	NA	intron (NM_004598, intron 2 of 10)	intron (NM_004598, intron 2 of 10)	124714	NM_004598	6695	Hs.596136	NM_004598	ENSG00000152377	SPOCK1	SPOCK|TESTICAN|TIC1	SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1	protein-coding
287	chr1	142535440	142535648	+	0	NA	Intergenic	AluSz6|SINE|Alu	178061	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	ankyrin repeat domain 20 family member A12, pseudogene	pseudo
6032	chr9	111574446	111574611	+	0	NA	Intergenic	L2a|LINE|L2	43747	NM_006686	10880	Hs.534390	NM_006686	ENSG00000148156	ACTL7B	Tact1	actin like 7B	protein-coding
4914	chr6	90082606	90082767	+	0	NA	intron (NM_021244, intron 5 of 6)	L1MC4|LINE|L1	-20067	NM_016021	51465	Hs.163776	NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
475	chr1	224199713	224199941	+	0	NA	intron (NR_136593, intron 2 of 4)	(GAATG)n|Satellite|Satellite	19395	NR_136593	100287497	Hs.568390	NR_136590		LOC100287497	-	septin 7 pseudogene	pseudo
932	chr11	70760404	70760714	+	0	NA	intron (NM_012309, intron 7 of 22)	intron (NM_012309, intron 7 of 22)	-42086	NR_037437	100500844		NR_037437	ENSG00000263744	MIR3664	mir-3664	microRNA 3664	ncRNA
2595	chr18	18747978	18747991	+	0	NA	Intergenic	Intergenic	-56172	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
3908	chr3	111761544	111761757	+	0	NA	intron (NM_001042575, intron 2 of 15)	L1M5|LINE|L1	3185	NR_026734	344805	Hs.435490	NM_001042575	ENSG00000176040	TMPRSS7	-	transmembrane protease, serine 7	protein-coding
3858	chr3	56951806	56951839	+	0	NA	intron (NM_001128615, intron 3 of 12)	intron (NM_001128615, intron 3 of 12)	-1323	NM_001289698	50650	Hs.476402	NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
1525	chr13	95898363	95898648	+	0	NA	intron (NM_001105515, intron 3 of 20)	intron (NM_001105515, intron 3 of 20)	55195	NM_005845	10257	Hs.508423	NM_005845	ENSG00000125257	ABCC4	MOAT-B|MOATB|MRP4	ATP binding cassette subfamily C member 4	protein-coding
515	chr1	246362476	246362648	+	0	NA	intron (NM_001167740, intron 5 of 11)	intron (NM_001167740, intron 5 of 11)	218152	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
4047	chr3	182209221	182209358	+	0	NA	Intergenic	Intergenic	-5139	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA
2545	chr17_gl000205_random	84309	84398	+	0	NA	Intergenic	LTR76|LTR|ERV1	-32270	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo
2761	chr18	55648187	55648206	+	0	NA	Intergenic	Intergenic	-63414	NM_015277	23327	Hs.185677	NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
4871	chr6	70887468	70887707	+	0	NA	intron (NM_001858, intron 42 of 50)	intron (NM_001858, intron 42 of 50)	105324	NM_078485	1297	Hs.590892	NM_001851	ENSG00000112280	COL9A1	DJ149L1.1.2|EDM6|MED|STL4	collagen type IX alpha 1 chain	protein-coding
1107	chr12	12008672	12008988	+	0	NA	intron (NM_001987, intron 4 of 7)	intron (NM_001987, intron 4 of 7)	206042	NM_001987	2120	Hs.504765	NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant 6	protein-coding
138	chr1	56997035	56997236	+	0	NA	intron (NM_003713, intron 2 of 5)	intron (NM_003713, intron 2 of 5)	48122	NM_003713	8613	Hs.405156	NM_003713	ENSG00000162407	PLPP3	Dri42|LPP3|PAP2B|PPAP2B|VCIP	phospholipid phosphatase 3	protein-coding
2996	chr2	42477042	42477176	+	0	NA	intron (NM_001145076, intron 2 of 21)	intron (NM_001145076, intron 2 of 21)	-79738	NR_110584	102723824	Hs.639826	NR_110584		LOC102723824	-	uncharacterized LOC102723824	ncRNA
3499	chr20	19091702	19091945	+	0	NA	Intergenic	Intergenic	-101467	NM_020689	57419	Hs.654790	NM_020689	ENSG00000185052	SLC24A3	NCKX3	solute carrier family 24 member 3	protein-coding
3838	chr3	29106874	29107094	+	0	NA	Intergenic	Intergenic	215446	NR_109804	100873979	Hs.99391	NR_109804		RBMS3-AS3	-	RBMS3 antisense RNA 3	ncRNA
724	chr10	99609126	99609215	+	0	NA	promoter-TSS (NM_001010917)	promoter-TSS (NM_001010917)	385	NR_108035	100505561	Hs.351904	NR_108035	ENSG00000227356	LINC00866	-	long intergenic non-protein coding RNA 866	ncRNA
5370	chr7	106765876	106766235	+	0	NA	intron (NM_002736, intron 3 of 10)	intron (NM_002736, intron 3 of 10)	-43351	NM_001244262	26959	Hs.162032	NM_012257	ENSG00000105856	HBP1	-	HMG-box transcription factor 1	protein-coding
4104	chr4	20455845	20455899	+	0	NA	intron (NM_001289136, intron 4 of 35)	intron (NM_001289136, intron 4 of 35)	62060	NR_037876	100505893	Hs.665305	NR_037876	ENSG00000248228	SLIT2-IT1	-	SLIT2 intronic transcript 1	ncRNA
3598	chr21	10701960	10702025	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	288951	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
5652	chr8	65179763	65179988	+	0	NA	intron (NR_125826, intron 1 of 4)	intron (NR_125826, intron 1 of 4)	101240	NR_125826	102724623	Hs.586375	NR_125826	ENSG00000253554	LOC102724623	-	uncharacterized LOC102724623	ncRNA
3534	chr20	29817768	29817889	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-27639	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
3958	chr3	130073341	130073596	+	0	NA	intron (NM_153264, intron 1 of 39)	intron (NM_153264, intron 1 of 39)	9109	NR_022012	256076	Hs.205403	NM_153264	ENSG00000172752	COL6A5	COL29A1|VWA4	collagen type VI alpha 5 chain	protein-coding
1195	chr12	49608433	49608951	+	0	NA	Intergenic	Intergenic	-13017	NM_001303117	84790	Hs.652390	NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
5646	chr8	62658633	62658854	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	31396	NR_039680	100616484		NR_039680	ENSG00000264408	MIR4470	mir-4470	microRNA 4470	ncRNA
5082	chr6	157550809	157551208	+	0	NA	Intergenic	L2a|LINE|L2	194283	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
3831	chr3	16524599	16524599	+	0	NA	intron (NM_015150, intron 2 of 9)	intron (NM_015150, intron 2 of 9)	30623	NM_015150	23180	Hs.98910	NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
1327	chr12	107524689	107524810	+	0	NA	Intergenic	Intergenic	-37114	NM_004075	1407	Hs.151573	NM_004075	ENSG00000008405	CRY1	PHLL1	cryptochrome circadian clock 1	protein-coding
2192	chr16	22000657	22000996	+	0	NA	intron (NM_173806, intron 1 of 2)	intron (NM_173806, intron 1 of 2)	11605	NM_173806	255762	Hs.98244	NM_173806	ENSG00000155714	PDZD9	C16orf65	PDZ domain containing 9	protein-coding
4655	chr6	7549336	7549421	+	0	NA	intron (NM_001008844, intron 1 of 23)	intron (NM_001008844, intron 1 of 23)	7570	NM_004415	1832	Hs.519873	NM_004415	ENSG00000096696	DSP	DCWHKTA|DP	desmoplakin	protein-coding
2667	chr18	36685032	36685531	+	0	NA	Intergenic	Intergenic	516858	NR_030628	100126323		NR_030628	ENSG00000283615	MIR924	MIRN924|hsa-mir-924	microRNA 924	ncRNA
1995	chr15	37047702	37048324	+	0	NA	intron (NM_001321756, intron 9 of 9)	intron (NM_001321756, intron 9 of 9)	62694	NR_027320	161635	Hs.659822	NR_027320		CSNK1A1P1	CSNK1A1P	casein kinase 1 alpha 1 pseudogene 1	pseudo
333	chr1	163795479	163796171	+	0	NA	Intergenic	Intergenic	-402844	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3 subunit J pseudogene	pseudo
4080	chr3	197098812	197099230	+	0	NA	Intergenic	Intergenic	-72878	NM_001290983	1739	Hs.292549	NM_004087	ENSG00000075711	DLG1	DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg	discs large MAGUK scaffold protein 1	protein-coding
5972	chr9	86064762	86064904	+	0	NA	intron (NM_001244959, intron 1 of 14)	intron (NM_001244959, intron 1 of 14)	17824	NM_001244960	257019	Hs.127535	NM_174938	ENSG00000172159	FRMD3	4.1O|EPB41L4O|EPB41LO|P410	FERM domain containing 3	protein-coding
4040	chr3	177802835	177803500	+	0	NA	Intergenic	Intergenic	268514	NR_110826	102724550	Hs.570526	NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
4427	chr5	16931243	16931367	+	0	NA	intron (NM_012334, intron 1 of 40)	AluSp|SINE|Alu	5080	NM_012334	4651	Hs.481720	NM_012334	ENSG00000145555	MYO10	-	myosin X	protein-coding
4451	chr5	46391606	46391740	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-695453	NM_021072	348980	Hs.353176	NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
3985	chr3	156343921	156344225	+	0	NA	Intergenic	LTR18A|LTR|ERVL	-48132	NM_015508	25976	Hs.744050	NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
2780	chr18	64800594	64800724	+	0	NA	Intergenic	Intergenic	51838	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA
446	chr1	209630357	209630608	+	0	NA	Intergenic	Intergenic	25004	NR_029622	406988		NR_029622	ENSG00000230937	MIR205	MIRN205|mir-205	microRNA 205	ncRNA
5942	chr9	71719789	71720262	+	0	NA	Intergenic	Intergenic	-16155	NM_001170414	9414	Hs.50382	NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
3901	chr3	108107122	108107240	+	0	NA	intron (NM_014981, intron 39 of 41)	intron (NM_014981, intron 39 of 41)	76549	NM_001282557	11148	Hs.225968	NM_007072	ENSG00000114455	HHLA2	B7-H5|B7-H7|B7H7|B7y	HERV-H LTR-associating 2	protein-coding
2181	chr16	16653099	16653392	+	0	NA	Intergenic	Intergenic	180143	NM_001282507	101059938	Hs.634612	NM_001282507	ENSG00000214967	NPIPA7	-	nuclear pore complex interacting protein family member A7	protein-coding
2229	chr16	33887834	33887897	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	74638	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
1582	chr13	107862826	107863058	+	0	NA	exon (NM_001080396, exon 2 of 3)	exon (NM_001080396, exon 2 of 3)	320654	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
2842	chr19	31296701	31296818	+	0	NA	Intergenic	Intergenic	433459	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
6283	chrX	58578291	58580392	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-642274	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger, X-linked, duplicated A	protein-coding
1599	chr13	108629914	108629965	+	0	NA	Intergenic	Intergenic	-110479	NM_001080396	728215	Hs.535394	NM_001080396	ENSG00000204442	FAM155A	-	family with sequence similarity 155 member A	protein-coding
2306	chr16	52299834	52299851	+	0	NA	intron (NR_135281, intron 1 of 2)	intron (NR_135281, intron 1 of 2)	7366	NR_135281	283854	Hs.266768	NR_135281	ENSG00000260887	CASC22	LINC01373|LincRNA-ENST00000515084|TCONS_00024290	cancer susceptibility candidate 22 (non-protein coding)	ncRNA
3013	chr2	50161049	50161432	+	0	NA	intron (NM_001330088, intron 17 of 17)	intron (NM_001330088, intron 17 of 17)	40101	NM_001320156	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
1149	chr12	34833960	34834180	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	658854	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
2900	chr2	4319598	4320079	+	0	NA	Intergenic	L1PA15|LINE|L1	298087	NR_136322	105373394	Hs.742693	NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
2283	chr16	46454888	46455117	+	0	NA	Intergenic	HSATII|Satellite|Satellite	148007	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
2603	chr18	21574260	21574717	+	0	NA	intron (NR_110796, intron 5 of 5)	intron (NR_110796, intron 5 of 5)	1751	NM_153211	125488	Hs.128576	NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
2407	chr17	4119184	4119390	+	0	NA	intron (NR_047571, intron 3 of 23)	intron (NR_047571, intron 3 of 23)	47855	NM_001257999	51479	Hs.696087	NM_016376	ENSG00000185722	ANKFY1	ANKHZN|BTBD23|ZFYVE14	ankyrin repeat and FYVE domain containing 1	protein-coding
4955	chr6	97488132	97488193	+	0	NA	intron (NM_001286254, intron 1 of 8)	intron (NM_001286254, intron 1 of 8)	30210	NM_001323261	114792	Hs.45056	NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch like family member 32	protein-coding
2695	chr18	42996225	42996408	+	0	NA	intron (NM_001242692, intron 1 of 20)	intron (NM_001242692, intron 1 of 20)	90685	NR_110899	101927980	Hs.591058	NR_110899		SLC14A2-AS1	-	SLC14A2 antisense RNA 1	ncRNA
1238	chr12	92759741	92759748	+	0	NA	Intergenic	Intergenic	-55563	NR_027932	574028	Hs.730377	NM_001025233	ENSG00000257127	CLLU1	-	chronic lymphocytic leukemia up-regulated 1	protein-coding
1559	chr13	101143258	101143574	+	0	NA	intron (NM_001178004, intron 21 of 22)	intron (NM_001178004, intron 21 of 22)	-10147	NR_047686	100885777	Hs.662554	NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
2866	chr19	49907087	49907237	+	0	NA	intron (NM_144688, intron 9 of 19)	intron (NM_144688, intron 9 of 19)	15687	NM_144688	147872	Hs.662085	NM_144688	ENSG00000161609	CCDC155	KASH5	coiled-coil domain containing 155	protein-coding
1793	chr14	68578047	68578094	+	0	NA	intron (NM_001321809, intron 7 of 11)	intron (NM_001321809, intron 7 of 11)	287761	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
7	chr1	725041	725188	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-11046	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
1701	chr14	42368347	42368467	+	0	NA	intron (NR_144389, intron 6 of 6)	intron (NR_144389, intron 6 of 6)	292348	NM_152447	145581	Hs.136893	NM_152447	ENSG00000165379	LRFN5	C14orf146|FIGLER8|SALM5	leucine rich repeat and fibronectin type III domain containing 5	protein-coding
2443	chr17	25267510	25267531	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	148747	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
5559	chr8	21091881	21092044	+	0	NA	Intergenic	MIR|SINE|MIR	-63788	NR_104677	101929172	Hs.128668	NR_104677	ENSG00000254334	LOC101929172	-	uncharacterized LOC101929172	ncRNA
5027	chr6	123066338	123066684	+	0	NA	Intergenic	7SLRNA|srpRNA|srpRNA	-3835	NM_001319042	2173	Hs.26770	NM_001446	ENSG00000164434	FABP7	B-FABP|BLBP|FABPB|MRG	fatty acid binding protein 7	protein-coding
6491	chrY	58972780	58973198	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	-127414	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
1937	chr14	93315392	93315526	+	0	NA	Intergenic	Intergenic	54883	NM_005113	9950	Hs.104320	NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
4688	chr6	20691257	20691519	+	0	NA	intron (NM_017774, intron 5 of 15)	intron (NM_017774, intron 5 of 15)	156700	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
255	chr1	116852473	116852627	+	0	NA	Intergenic	Intergenic	-63245	NM_000701	476	Hs.371889	NM_000701	ENSG00000163399	ATP1A1	-	ATPase Na+/K+ transporting subunit alpha 1	protein-coding
5542	chr8	8953199	8953344	+	0	NA	Intergenic	AluJb|SINE|Alu	47316	NR_039804	100616350		NR_039804	ENSG00000263407	MIR4660	-	microRNA 4660	ncRNA
5364	chr7	105712594	105712748	+	0	NA	Intergenic	L2|LINE|L2	40120	NM_182715	6856	Hs.80919	NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
2230	chr16	33887898	33888105	+	0	NA	Intergenic	AluYc|SINE|Alu	74502	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
4274	chr4	94068789	94069040	+	0	NA	intron (NM_001286838, intron 3 of 14)	intron (NM_001286838, intron 3 of 14)	-681164	NM_005172	474	Hs.532680	NM_005172	ENSG00000172238	ATOH1	ATH1|HATH1|MATH-1|bHLHa14	atonal bHLH transcription factor 1	protein-coding
5556	chr8	18460349	18460502	+	0	NA	intron (NM_015310, intron 11 of 15)	intron (NM_015310, intron 11 of 15)	205980	NM_206909	23362	Hs.434255	NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
5154	chr7	26450179	26450574	+	0	NA	intron (NR_015364, intron 1 of 4)	intron (NR_015364, intron 1 of 4)	7268	NR_015364	441204	Hs.587432	NR_015364		LOC441204	-	uncharacterized LOC441204	ncRNA
6026	chr9	108200613	108200721	+	0	NA	3' UTR (NM_001330731, exon 16 of 16)	3' UTR (NM_001330731, exon 16 of 16)	-9648	NM_001330739	83856	Hs.136901	NM_031919	ENSG00000106701	FSD1L	CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1	fibronectin type III and SPRY domain containing 1 like	protein-coding
4740	chr6	24212820	24213149	+	0	NA	intron (NM_016356, intron 7 of 9)	intron (NM_016356, intron 7 of 9)	86570	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
182	chr1	75759117	75759272	+	0	NA	intron (NM_001320285, intron 7 of 25)	intron (NM_001320285, intron 7 of 25)	158627	NM_001256114	431707	Hs.403934	NM_001001933	ENSG00000162624	LHX8	LHX7	LIM homeobox 8	protein-coding
3422	chr2	230283099	230283282	+	0	NA	intron (NM_139072, intron 8 of 12)	intron (NM_139072, intron 8 of 12)	-147133	NM_001100818	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
4146	chr4	49126407	49127523	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	138306	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3809	chr22	43843325	43843708	+	0	NA	intron (NM_001044370, intron 3 of 6)	intron (NM_001044370, intron 3 of 6)	35496	NM_001044370	758	Hs.159538	NM_001044370	ENSG00000186732	MPPED1	239AB|C22orf1|FAM1A	metallophosphoesterase domain containing 1	protein-coding
6380	chrY	13468672	13468674	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1064716	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
6371	chrY	13458244	13458333	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1075101	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
815	chr11	20719365	20719479	+	0	NA	intron (NM_201551, intron 2 of 18)	intron (NM_201551, intron 2 of 18)	28325	NM_001288714	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding
3486	chr20	14074250	14074664	+	0	NA	intron (NM_080676, intron 3 of 16)	L2c|LINE|L2	98311	NM_080676	140733	Hs.661576	NM_080676	ENSG00000172264	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
5176	chr7	29372037	29372173	+	0	NA	intron (NM_001293070, intron 2 of 13)	Tigger5|DNA|TcMar-Tigger	-123519	NR_120522	102724484	Hs.638665	NR_120522		LOC102724484	-	uncharacterized LOC102724484	ncRNA
167	chr1	65516791	65516981	+	0	NA	intron (NM_001321853, intron 2 of 26)	intron (NM_001321853, intron 2 of 26)	6639	NR_037443	100500854		NR_037443	ENSG00000265996	MIR3671	-	microRNA 3671	ncRNA
692	chr10	78057991	78058060	+	0	NA	intron (NR_131178, intron 6 of 7)	intron (NR_131178, intron 6 of 7)	515506	NM_032024	83938	Hs.118161	NM_032024	ENSG00000148655	C10orf11	CDA017	chromosome 10 open reading frame 11	protein-coding
6487	chrY	28793458	28793556	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	918870	NR_002176	474148	Hs.511777	NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis-specific transcript, Y-linked 3B (non-protein coding)	ncRNA
6442	chrY	13843859	13843913	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	689503	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5743	chr8	101891423	101891798	+	0	NA	Intergenic	Intergenic	71189	NM_001135702	7534	Hs.492407	NM_003406	ENSG00000164924	YWHAZ	14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|YWHAD	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein-coding
4961	chr6	98962776	98962969	+	0	NA	Intergenic	Intergenic	-319708	NM_005604	5454	Hs.182505	NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
1907	chr14	89030344	89030372	+	0	NA	intron (NM_001326300, intron 2 of 15)	FLAM_C|SINE|Alu	667	NM_001326316	79882	Hs.684046	NM_024824	ENSG00000100722	ZC3H14	MRT56|MSUT-2|NY-REN-37|SUT2|UKp68	zinc finger CCCH-type containing 14	protein-coding
3564	chr20	42646821	42646837	+	0	NA	intron (NM_001098798, intron 3 of 7)	intron (NM_001098798, intron 3 of 7)	72293	NM_001098798	84969	Hs.26608	NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
854	chr11	47486381	47486629	+	0	NA	TTS (NM_001172640)	TTS (NM_001172640)	-15775	NM_005055	5913	Hs.81218	NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
5933	chr9	70009953	70009971	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	168853	NM_001126334	653427	Hs.714683	NM_001126334	ENSG00000204779	FOXD4L5	bA15J10.2	forkhead box D4-like 5	protein-coding
4971	chr6	105159657	105159737	+	0	NA	Intergenic	AluJr|SINE|Alu	147724	NM_001321084	57531	Hs.434340	NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
6072	chr9	131331319	131331416	+	0	NA	intron (NM_003127, intron 3 of 55)	intron (NM_003127, intron 3 of 55)	16530	NM_001195532	6709	Hs.372331	NM_003127	ENSG00000197694	SPTAN1	EIEE5|NEAS|SPTA2	spectrin alpha, non-erythrocytic 1	protein-coding
3120	chr2	89867959	89868914	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	756552	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
3769	chr22	24903028	24903191	+	0	NA	intron (NM_016327, intron 3 of 9)	intron (NM_016327, intron 3 of 9)	11858	NM_016327	51733	Hs.731656	NM_016327	ENSG00000100024	UPB1	BUP1	beta-ureidopropionase 1	protein-coding
1174	chr12	34853950	34853983	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	678750	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
4023	chr3	176999700	176999794	+	0	NA	Intergenic	Intergenic	-12483	NR_047465	100820709	Hs.518409	NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
510	chr1	245970676	245970856	+	0	NA	intron (NM_001167740, intron 10 of 11)	intron (NM_001167740, intron 10 of 11)	609948	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
393	chr1	202933654	202933767	+	0	NA	intron (NM_016243, intron 6 of 8)	intron (NM_016243, intron 6 of 8)	2694	NM_016243	51706	Hs.334832	NM_016243	ENSG00000159348	CYB5R1	B5R.1|B5R1|B5R2|NQO3A2|humb5R2	cytochrome b5 reductase 1	protein-coding
3020	chr2	51239757	51239982	+	0	NA	intron (NM_001330081, intron 2 of 5)	intron (NM_001330081, intron 2 of 5)	19805	NM_001330085	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
6482	chrY	28784522	28784551	+	0	NA	Intergenic	(CGAAT)n|Simple_repeat|Simple_repeat	909899	NR_002176	474148	Hs.511777	NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis-specific transcript, Y-linked 3B (non-protein coding)	ncRNA
5892	chr9	42819201	42819208	+	0	NA	intron (NR_135597, intron 4 of 4)	ALR/Alpha|Satellite|centr	37998	NR_136299	101929583	Hs.404758	NR_136299		LOC101929583	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene	pseudo
658	chr10	42818029	42818280	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	45339	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
3262	chr2	147955690	147955941	+	0	NA	Intergenic	Intergenic	611190	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein cytoplasmic 1 pseudogene 2	pseudo
274	chr1	121355384	121355540	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	94552	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
3550	chr20	29832055	29832078	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-13401	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
4786	chr6	37315493	37315934	+	0	NA	Intergenic	LTR43|LTR|ERV1	-6035	NR_046399	9025	Hs.485278	NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding
4392	chr5	2155160	2155353	+	0	NA	Intergenic	Intergenic	157059	NR_104616	100506858	Hs.445071	NR_104616		LOC100506858	-	uncharacterized LOC100506858	ncRNA
877	chr11	51579725	51579767	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	64464	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
5989	chr9	92930316	92930552	+	0	NA	Intergenic	L1MD2|LINE|L1	-126653	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
1508	chr13	89478808	89479070	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	199832	NR_047490	100861553	Hs.560132	NR_047490		LINC00560	-	long intergenic non-protein coding RNA 560	ncRNA
3034	chr2	56750196	56750199	+	0	NA	Intergenic	Intergenic	-337292	NR_125368	100129434	Hs.580330	NR_125368		LOC100129434	-	uncharacterized LOC100129434	ncRNA
1771	chr14	63742156	63742491	+	0	NA	intron (NM_020663, intron 2 of 4)	intron (NM_020663, intron 2 of 4)	43270	NM_145171	122876	Hs.375028	NM_145171	ENSG00000179600	GPHB5	B5|GPB5|ZLUT1	glycoprotein hormone beta 5	protein-coding
1128	chr12	18318235	18318418	+	0	NA	Intergenic	Intergenic	-75199	NM_024730	79785	Hs.732831	NM_024730	ENSG00000111404	RERGL	-	RERG like	protein-coding
5297	chr7	69119267	69119387	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	55422	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
2891	chr2	3656635	3656973	+	0	NA	intron (NM_001255989, intron 1 of 3)	intron (NM_001255989, intron 1 of 3)	3162	NM_001255989	78989	Hs.32603	NM_024027	ENSG00000118004	COLEC11	3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin subfamily member 11	protein-coding
4737	chr6	24077331	24077562	+	0	NA	Intergenic	L1PB3|LINE|L1	-48968	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
3515	chr20	26318338	26318339	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-128469	NR_040095	284801	Hs.370699	NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
4074	chr3	194916104	194916296	+	0	NA	intron (NM_152531, intron 2 of 3)	intron (NM_152531, intron 2 of 3)	47600	NR_102711	101410543	Hs.658170	NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
5586	chr8	29658167	29658196	+	0	NA	Intergenic	Intergenic	27839	NR_125817	101929470	Hs.204721	NR_125817	ENSG00000248964	LOC101929470	-	uncharacterized LOC101929470	ncRNA
1724	chr14	54234287	54234504	+	0	NA	Intergenic	Intergenic	180807	NR_049843	100847076		NR_049843	ENSG00000266431	MIR5580	-	microRNA 5580	ncRNA
1520	chr13	94322165	94322602	+	0	NA	intron (NM_005708, intron 2 of 8)	intron (NM_005708, intron 2 of 8)	188343	NR_046536	100873973	Hs.615939	NR_046536		GPC6-AS2	-	GPC6 antisense RNA 2	ncRNA
3965	chr3	131776192	131776434	+	0	NA	Intergenic	Intergenic	-17863	NM_153429	131034	Hs.199877	NM_130808	ENSG00000196353	CPNE4	COPN4|CPN4	copine 4	protein-coding
4056	chr3	183347729	183347904	+	0	NA	Intergenic	Intergenic	-5595	NM_017644	54800	Hs.407709	NM_017644	ENSG00000114796	KLHL24	DRE1|KRIP6	kelch like family member 24	protein-coding
6268	chrX	39828097	39828363	+	0	NA	Intergenic	L1ME4a|LINE|L1	128489	NM_017745	54880	Hs.659681	NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
5127	chr7	8216433	8216682	+	0	NA	intron (NM_004968, intron 6 of 13)	MIRb|SINE|MIR	85125	NM_022307	3382	Hs.487561	NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
303	chr1	144987569	144987752	+	0	NA	intron (NM_001002810, intron 1 of 3)	L1MB3|LINE|L1	7373	NM_001002810	9659	Hs.584841	NM_014644	ENSG00000178104	PDE4DIP	CMYA2|MMGL	phosphodiesterase 4D interacting protein	protein-coding
250	chr1	115848603	115848833	+	0	NA	intron (NM_002506, intron 1 of 2)	intron (NM_002506, intron 1 of 2)	32139	NM_002506	4803	Hs.2561	NM_002506	ENSG00000134259	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor	protein-coding
2148	chr15	101679672	101679991	+	0	NA	Intergenic	Intergenic	112306	NM_014918	22856	Hs.110488	NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
614	chr10	39128787	39128821	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	139077	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
1765	chr14	61855201	61855336	+	0	NA	intron (NM_006255, intron 1 of 13)	intron (NM_006255, intron 1 of 13)	67107	NM_006255	5583	Hs.333907	NM_006255	ENSG00000027075	PRKCH	PKC-L|PKCL|PRKCL|nPKC-eta	protein kinase C eta	protein-coding
2963	chr2	25008942	25009193	+	0	NA	Intergenic	Intergenic	-6917	NR_136184	79172	Hs.731569	NM_024322	ENSG00000138092	CENPO	CENP-O|ICEN-36|MCM21R	centromere protein O	protein-coding
6446	chrY	13850190	13850217	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	683186	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
6019	chr9	99997626	99997662	+	0	NA	intron (NR_136286, intron 1 of 17)	intron (NR_136286, intron 1 of 17)	-3064	NR_036527	57653	Hs.435629	NR_036527	ENSG00000255036	LOC100499484-C9ORF174	-	LOC100499484-C9orf174 readthrough	ncRNA
2959	chr2	24882848	24882974	+	0	NA	intron (NM_147223, intron 3 of 21)	intron (NM_147223, intron 3 of 21)	75565	NM_147223	8648	Hs.596314	NM_003743	ENSG00000084676	NCOA1	F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74	nuclear receptor coactivator 1	protein-coding
5046	chr6	138898401	138898586	+	0	NA	Intergenic	Intergenic	-4825	NM_020464	57224	Hs.652741	NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
6436	chrY	13842859	13842903	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	690508	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
6005	chr9	95715789	95715975	+	0	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	6281	NM_001083536	89846	Hs.411081	NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
130	chr1	51076184	51076613	+	0	NA	intron (NM_007051, intron 8 of 18)	intron (NM_007051, intron 8 of 18)	-187279	NM_032110	63950	Hs.334481	NM_032110	ENSG00000142700	DMRTA2	-	DMRT like family A2	protein-coding
6320	chrX	79610455	79610622	+	0	NA	intron (NM_001170574, intron 3 of 4)	L1P4e|LINE|L1	19535	NM_001170574	169966	Hs.367959	NM_152630	ENSG00000174016	FAM46D	CT1.26|CT112	family with sequence similarity 46 member D	protein-coding
1373	chr12	117933116	117933393	+	0	NA	intron (NM_173598, intron 14 of 19)	intron (NM_173598, intron 14 of 19)	-133647	NM_001204218	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
53	chr1	16886531	16886650	+	0	NA	Intergenic	Intergenic	11181	NR_037446	100500876		NR_037446	ENSG00000263811	MIR3675	-	microRNA 3675	ncRNA
2925	chr2	5265094	5265439	+	0	NA	Intergenic	Intergenic	-561454	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
1302	chr12	104670302	104670575	+	0	NA	intron (NM_001093771, intron 3 of 16)	intron (NM_001093771, intron 3 of 16)	-10022	NM_182742	7296	Hs.654922	NM_003330	ENSG00000198431	TXNRD1	GRIM-12|TR|TR1|TRXR1|TXNR	thioredoxin reductase 1	protein-coding
5591	chr8	29705981	29706089	+	0	NA	Intergenic	Intergenic	-20015	NR_125817	101929470	Hs.204721	NR_125817	ENSG00000248964	LOC101929470	-	uncharacterized LOC101929470	ncRNA
5329	chr7	80259705	80260032	+	0	NA	intron (NM_001289911, intron 1 of 11)	intron (NM_001289911, intron 1 of 11)	-7964	NM_001001548	948	Hs.120949	NM_000072	ENSG00000135218	CD36	BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3	CD36 molecule	protein-coding
2239	chr16	33896386	33896740	+	0	NA	Intergenic	HSATII|Satellite|Satellite	65940	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
4966	chr6	104372882	104373223	+	0	NA	Intergenic	Intergenic	934369	NM_001321084	57531	Hs.434340	NM_020771	ENSG00000085382	HACE1	SPPRS	HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1	protein-coding
5905	chr9	66834642	66834776	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-88258	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
4517	chr5	121652615	121652757	+	0	NA	intron (NM_001308107, intron 1 of 8)	intron (NM_001308107, intron 1 of 8)	4922	NM_001308100	9627	Hs.426463	NM_005460	ENSG00000064692	SNCAIP	SYPH1|Sph1	synuclein alpha interacting protein	protein-coding
3341	chr2	191728365	191729184	+	0	NA	Intergenic	Intergenic	-16773	NM_001256310	2744	Hs.116448	NM_014905	ENSG00000115419	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
3029	chr2	56701703	56701750	+	0	NA	Intergenic	Intergenic	-288821	NR_125368	100129434	Hs.580330	NR_125368		LOC100129434	-	uncharacterized LOC100129434	ncRNA
2392	chr16	84553742	84554288	+	0	NA	Intergenic	L1M5|LINE|L1	-15727	NM_020947	57707	Hs.288274	NM_020947	ENSG00000140950	TLDC1	KIAA1609	TBC/LysM-associated domain containing 1	protein-coding
4255	chr4	82728615	82729056	+	0	NA	Intergenic	Intergenic	-335753	NM_152545	153020	Hs.591696	NM_152545	ENSG00000138670	RASGEF1B	GPIG4	RasGEF domain family member 1B	protein-coding
3587	chr21	10085189	10085390	+	0	NA	Intergenic	AluYa8|SINE|Alu	-116695	NR_038328	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
1879	chr14	82534050	82534392	+	0	NA	Intergenic	Intergenic	-444816	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
3313	chr2	174095708	174095982	+	0	NA	intron (NM_016653, intron 12 of 19)	intron (NM_016653, intron 12 of 19)	50919	NR_033882	339751	Hs.570083	NR_033882	ENSG00000238133	MAP3K20-AS1	MLK7-AS1	MAP3K20 antisense RNA 1	ncRNA
1824	chr14	70597278	70597429	+	0	NA	intron (NM_033262, intron 2 of 7)	intron (NM_033262, intron 2 of 7)	-50419	NM_001130417	6547	Hs.337696	NM_033262	ENSG00000100678	SLC8A3	NCX3	solute carrier family 8 member A3	protein-coding
4135	chr4	49108660	49108680	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	120011	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
2917	chr2	5251542	5251695	+	0	NA	Intergenic	L1MB7|LINE|L1	-547806	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
2342	chr16	67397689	67398118	+	0	NA	intron (NM_018296, intron 6 of 13)	intron (NM_018296, intron 6 of 13)	16645	NM_001161575	55282	Hs.125139	NM_018296	ENSG00000159708	LRRC36	RORBP70|XLHSRF2	leucine rich repeat containing 36	protein-coding
3516	chr20	26318340	26318376	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-128489	NR_040095	284801	Hs.370699	NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
5633	chr8	61532071	61532766	+	0	NA	intron (NM_001242644, intron 6 of 6)	intron (NM_001242644, intron 6 of 6)	-58906	NM_017780	55636	Hs.20395	NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
832	chr11	22771287	22771449	+	0	NA	intron (NM_001143830, intron 6 of 7)	intron (NM_001143830, intron 6 of 7)	75049	NM_005256	2620	Hs.711297	NM_005256	ENSG00000148935	GAS2	-	growth arrest specific 2	protein-coding
2135	chr15	96369240	96369320	+	0	NA	Intergenic	Intergenic	392958	NR_027132	145820	Hs.652702	NR_027132	ENSG00000259134	LINC00924	-	long intergenic non-protein coding RNA 924	ncRNA
3916	chr3	114120863	114121293	+	0	NA	intron (NM_001164343, intron 8 of 11)	intron (NM_001164343, intron 8 of 11)	-18589	NM_001164342	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
828	chr11	21745541	21745784	+	0	NA	Intergenic	Intergenic	-469060	NM_213599	203859	Hs.154329	NM_213599	ENSG00000171714	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
276	chr1	121355577	121357496	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	95626	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
6006	chr9	97205217	97205358	+	0	NA	intron (NM_032558, intron 5 of 11)	intron (NM_032558, intron 5 of 11)	68454	NM_032558	84641	Hs.555996	NM_032558	ENSG00000148110	MFSD14B	HIATL1	major facilitator superfamily domain containing 14B	protein-coding
6376	chrY	13458596	13458598	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1074792	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1831	chr14	74607171	74607389	+	0	NA	intron (NM_001024674, intron 5 of 5)	intron (NM_001024674, intron 5 of 5)	55624	NM_001024674	91750	Hs.612866	NM_001024674	ENSG00000205659	LIN52	C14orf46|c14_5549	lin-52 DREAM MuvB core complex component	protein-coding
2465	chr17	36571519	36571558	+	0	NA	Intergenic	Intergenic	-13182	NM_001199417	57636	Hs.374446	NM_020876	ENSG00000275832	ARHGAP23	-	Rho GTPase activating protein 23	protein-coding
3949	chr3	125604751	125604917	+	0	NA	promoter-TSS (NR_125395)	promoter-TSS (NR_125395)	86	NR_125396	101927056	Hs.744344	NR_125395	ENSG00000241288	LOC101927056	-	uncharacterized LOC101927056	ncRNA
3523	chr20	29804602	29804667	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-40833	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
6247	chrX	6067691	6067794	+	0	NA	intron (NM_001282145, intron 3 of 6)	intron (NM_001282145, intron 3 of 6)	-76657	NR_136577	105373156	Hs.21107	NR_136577		LOC105373156	-	uncharacterized LOC105373156	ncRNA
5519	chr7	152374713	152375534	+	0	NA	Intergenic	Intergenic	-1873	NM_005431	7516	Hs.647093	NM_005431	ENSG00000196584	XRCC2	FANCU	X-ray repair cross complementing 2	protein-coding
4614	chr5	171991118	171991142	+	0	NA	Intergenic	Intergenic	-77139	NM_001308178	54492	Hs.91521	NM_001142651	ENSG00000214357	NEURL1B	NEURL3|hNeur2|neur2	neuralized E3 ubiquitin protein ligase 1B	protein-coding
3868	chr3	93801373	93801383	+	0	NA	intron (NM_022072, intron 2 of 5)	Helitron3Na_Mam|RC|Helitron	-19311	NM_001195643	200895	Hs.718516	NM_176815	ENSG00000178700	DHFR2	DHFRL1|DHFRP4	dihydrofolate reductase 2	protein-coding
1404	chr12	128113670	128113755	+	0	NA	Intergenic	Intergenic	7300	NR_120451	101927637	Hs.170413	NR_120451	ENSG00000256022	LOC101927637	-	uncharacterized LOC101927637	ncRNA
1543	chr13	99053984	99054447	+	0	NA	intron (NM_005766, intron 13 of 26)	intron (NM_005766, intron 13 of 26)	120164	NM_003576	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
424	chr1	206878907	206879117	+	0	NA	intron (NM_032960, intron 1 of 9)	intron (NM_032960, intron 1 of 9)	20647	NM_004759	9261	Hs.643566	NM_004759	ENSG00000162889	MAPKAPK2	MAPKAP-K2|MK-2|MK2	mitogen-activated protein kinase-activated protein kinase 2	protein-coding
4124	chr4	40336363	40336463	+	0	NA	promoter-TSS (NM_017581)	promoter-TSS (NM_017581)	-933	NM_017581	55584	Hs.272278	NM_017581	ENSG00000174343	CHRNA9	HSA243342|NACHRA9	cholinergic receptor nicotinic alpha 9 subunit	protein-coding
6333	chrX	131727123	131727278	+	0	NA	Intergenic	Intergenic	-74470	NR_046691	100874102	Hs.619341	NR_046691	ENSG00000235849	HS6ST2-AS1	-	HS6ST2 antisense RNA 1	ncRNA
1402	chr12	128105438	128105828	+	0	NA	Intergenic	Intergenic	15379	NR_120451	101927637	Hs.170413	NR_120451	ENSG00000256022	LOC101927637	-	uncharacterized LOC101927637	ncRNA
4936	chr6	91521164	91521345	+	0	NA	Intergenic	Intergenic	-224234	NM_003188	6885	Hs.594838	NM_003188	ENSG00000135341	MAP3K7	CSCF|FMD2|MEKK7|TAK1|TGF1a	mitogen-activated protein kinase kinase kinase 7	protein-coding
4985	chr6	107475800	107475800	+	0	NA	3' UTR (NM_020381, exon 8 of 8)	3' UTR (NM_020381, exon 8 of 8)	-40164	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
2402	chr17	1018402	1018774	+	0	NA	intron (NM_001322841, intron 2 of 22)	L2b|LINE|L2	-6248	NM_001092	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
2986	chr2	40437281	40437519	+	0	NA	intron (NM_021097, intron 1 of 9)	intron (NM_021097, intron 1 of 9)	220044	NM_001112801	6546	Hs.31961	NM_021097	ENSG00000183023	SLC8A1	NCX1	solute carrier family 8 member A1	protein-coding
1841	chr14	75877413	75878528	+	0	NA	Intergenic	MIRb|SINE|MIR	-16539	NM_001135047	122953	Hs.196482	NM_130469	ENSG00000140044	JDP2	JUNDM2	Jun dimerization protein 2	protein-coding
347	chr1	169154337	169154348	+	0	NA	intron (NM_197972, intron 10 of 11)	intron (NM_197972, intron 10 of 11)	78395	NM_001677	481	Hs.291196	NM_001677	ENSG00000143153	ATP1B1	ATP1B	ATPase Na+/K+ transporting subunit beta 1	protein-coding
4865	chr6	61914021	61914031	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-369982	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
3558	chr20	32142901	32143076	+	0	NA	intron (NM_001032999, intron 1 of 10)	MER57E1|LTR|ERV1	-7183	NM_001039709	9139	Hs.153934	NM_005093	ENSG00000078699	CBFA2T2	EHT|MTGR1|ZMYND3|p85	CBFA2/RUNX1 translocation partner 2	protein-coding
3294	chr2	162029091	162029326	+	0	NA	intron (NM_001199135, intron 1 of 7)	MER5A1|DNA|hAT-Charlie	12269	NM_001199135	10010	Hs.132257	NM_004180	ENSG00000136560	TANK	I-TRAF|ITRAF|TRAF2	TRAF family member associated NFKB activator	protein-coding
4307	chr4	124339758	124340178	+	0	NA	Intergenic	Intergenic	19323	NM_005841	10252	Hs.744854	NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
434	chr1	209010444	209010751	+	0	NA	Intergenic	Intergenic	-488204	NR_135085	105372897	Hs.116154	NR_135085	ENSG00000227940	LINC01696	-	long intergenic non-protein coding RNA 1696	ncRNA
2586	chr18	18512557	18512650	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	179209	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
5982	chr9	92801297	92801359	+	0	NA	intron (NR_038882, intron 1 of 3)	intron (NR_038882, intron 1 of 3)	2453	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
1184	chr12	42313622	42313701	+	0	NA	Intergenic	Intergenic	155670	NR_135040	101927038	Hs.98588	NR_135040	ENSG00000257784	LOC101927038	-	uncharacterized LOC101927038	ncRNA
865	chr11	51570330	51570345	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	55055	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
3165	chr2	92270111	92270141	+	0	NA	Intergenic	HSATII|Satellite|Satellite	140967	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
5557	chr8	18460503	18460572	+	0	NA	intron (NM_015310, intron 11 of 15)	intron (NM_015310, intron 11 of 15)	205868	NM_206909	23362	Hs.434255	NM_015310	ENSG00000156011	PSD3	EFA6D|EFA6R|HCA67	pleckstrin and Sec7 domain containing 3	protein-coding
4216	chr4	53730940	53731275	+	0	NA	intron (NM_023940, intron 3 of 3)	intron (NM_023940, intron 3 of 3)	2612	NM_023940	65997	Hs.8035	NM_023940	ENSG00000128045	RASL11B	-	RAS like family 11 member B	protein-coding
6046	chr9	119048502	119048886	+	0	NA	intron (NM_002581, intron 9 of 21)	intron (NM_002581, intron 9 of 21)	114191	NR_103711	493913	Hs.728832	NR_103711	ENSG00000256040	PAPPA-AS1	DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105	PAPPA antisense RNA 1	ncRNA
4134	chr4	49102546	49108659	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	116943	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
5920	chr9	67320277	67320971	+	0	NA	intron (NR_136300, intron 3 of 3)	ALR/Alpha|Satellite|centr	30173	NR_136300	102724580	Hs.494013	NR_136300		LOC102724580	-	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene	pseudo
4654	chr6	7548918	7549335	+	0	NA	intron (NM_001008844, intron 1 of 23)	L2b|LINE|L2	7318	NM_004415	1832	Hs.519873	NM_004415	ENSG00000096696	DSP	DCWHKTA|DP	desmoplakin	protein-coding
5603	chr8	43094362	43094543	+	0	NA	Intergenic	SAR|Satellite|Satellite	-53133	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
689	chr10	77978119	77978185	+	0	NA	intron (NR_131178, intron 6 of 7)	intron (NR_131178, intron 6 of 7)	435633	NM_032024	83938	Hs.118161	NM_032024	ENSG00000148655	C10orf11	CDA017	chromosome 10 open reading frame 11	protein-coding
3129	chr2	89876179	89877641	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	765026	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
3929	chr3	123476789	123477089	+	0	NA	intron (NM_053027, intron 4 of 32)	intron (NM_053027, intron 4 of 32)	68448	NR_046629	100873940	Hs.667316	NR_046629	ENSG00000250174	MYLK-AS2	-	MYLK antisense RNA 2	ncRNA
5994	chr9	93330750	93331024	+	0	NA	intron (NR_034157, intron 1 of 5)	intron (NR_034157, intron 1 of 5)	14141	NR_034157	340515	Hs.522284	NM_001105317		LINC01501	-	long intergenic non-protein coding RNA 1501	ncRNA
3462	chr20	7750921	7751207	+	0	NA	Intergenic	Intergenic	170029	NM_017545	54363	Hs.193640	NM_017545	ENSG00000101323	HAO1	GOX|GOX1|HAOX1	hydroxyacid oxidase 1	protein-coding
1116	chr12	12486744	12486870	+	0	NA	intron (NM_018050, intron 3 of 3)	intron (NM_018050, intron 3 of 3)	16362	NM_018050	54682	Hs.591145	NM_018050	ENSG00000111261	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
5231	chr7	61080320	61080622	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1683963	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
4413	chr5	7209810	7209995	+	0	NA	Intergenic	Intergenic	59565	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
5047	chr6	138898587	138898826	+	0	NA	Intergenic	Intergenic	-5038	NM_020464	57224	Hs.652741	NM_020464	ENSG00000135540	NHSL1	C6orf63	NHS like 1	protein-coding
2869	chr19	51550236	51550417	+	0	NA	Intergenic	Intergenic	-12178	NM_145895	43849	Hs.411572	NM_019598	ENSG00000186474	KLK12	KLK-L5|KLKL5	kallikrein related peptidase 12	protein-coding
1725	chr14	54234505	54234673	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	180613	NR_049843	100847076		NR_049843	ENSG00000266431	MIR5580	-	microRNA 5580	ncRNA
4965	chr6	102111387	102111580	+	0	NA	intron (NM_001166247, intron 3 of 16)	intron (NM_001166247, intron 3 of 16)	264622	NM_021956	2898	Hs.98262	NM_021956	ENSG00000164418	GRIK2	EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6	glutamate ionotropic receptor kainate type subunit 2	protein-coding
727	chr10	100117390	100117548	+	0	NA	Intergenic	Intergenic	37595	NR_031619	100302133		NR_031619	ENSG00000119943	MIR1287	MIRN1287|hsa-mir-1287|mir-1287	microRNA 1287	ncRNA
2379	chr16	80201578	80202013	+	0	NA	intron (NR_120307, intron 2 of 5)	intron (NR_120307, intron 2 of 5)	372649	NR_104661	101928248	Hs.659802	NR_104660	ENSG00000260876	LINC01229	-	long intergenic non-protein coding RNA 1229	ncRNA
5827	chr9	935348	935357	+	0	NA	intron (NM_021951, intron 4 of 4)	intron (NM_021951, intron 4 of 4)	-41616	NM_021240	58524	Hs.189174	NM_021240	ENSG00000064218	DMRT3	DMRTA3	doublesex and mab-3 related transcription factor 3	protein-coding
4220	chr4	56624258	56624450	+	0	NA	Intergenic	Intergenic	-61883	NR_003935	644145	Hs.570825	NR_003935		LOC644145	-	exocyst complex component 1 pseudogene	pseudo
939	chr11	72019932	72019942	+	0	NA	intron (NM_030813, intron 8 of 16)	intron (NM_030813, intron 8 of 16)	-64717	NM_005169	401	Hs.731115	NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2a	protein-coding
5222	chr7	61079601	61079617	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1684825	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
4600	chr5	153866388	153866579	+	0	NA	Intergenic	Intergenic	-8659	NM_004821	9421	Hs.152531	NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
2619	chr18	26739915	26740187	+	0	NA	Intergenic	Intergenic	-982641	NM_001792	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
4095	chr4	10356410	10356430	+	0	NA	Intergenic	L1PBa|LINE|L1	102612	NM_053042	85460	Hs.455089	NM_053042	ENSG00000178163	ZNF518B	-	zinc finger protein 518B	protein-coding
1670	chr14	36815021	36815250	+	0	NA	Intergenic	Intergenic	-25253	NM_001308110	51562	Hs.368647	NM_016586	ENSG00000151332	MBIP	-	MAP3K12 binding inhibitory protein 1	protein-coding
2010	chr15	45104070	45104285	+	0	NA	Intergenic	Intergenic	75617	NM_001301145	140691	Hs.745248	NM_080745	ENSG00000185880	TRIM69	HSD-34|HSD34|RNF36|Trif	tripartite motif containing 69	protein-coding
4858	chr6	61913203	61913255	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-370779	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
6170	chrUn_gl000216	31188	31239	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
2834	chr19	24619807	24619818	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-273563	NR_003603	100101266	Hs.149312	NR_003603	ENSG00000268442	HAVCR1P1	-	hepatitis A virus cellular receptor 1 pseudogene 1	pseudo
3342	chr2	191729185	191729227	+	0	NA	Intergenic	Intergenic	-16341	NM_001256310	2744	Hs.116448	NM_014905	ENSG00000115419	GLS	AAD20|GAC|GAM|GLS1|KGA	glutaminase	protein-coding
4237	chr4	74456514	74456829	+	0	NA	intron (NM_201431, intron 4 of 10)	intron (NM_201431, intron 4 of 10)	29616	NM_177532	166824	Hs.529677	NM_177532	ENSG00000169435	RASSF6	-	Ras association domain family member 6	protein-coding
1537	chr13	98252815	98253045	+	0	NA	Intergenic	Tigger2b_Pri|DNA|TcMar-Tigger	166455	NM_021033	5911	Hs.508480	NM_021033	ENSG00000125249	RAP2A	K-REV|KREV|RAP2|RbBP-30	RAP2A, member of RAS oncogene family	protein-coding
1127	chr12	16758844	16759058	+	0	NA	promoter-TSS (NM_001243611)	promoter-TSS (NM_001243611)	-47	NM_001243612	55885	Hs.504908	NM_018640	ENSG00000048540	LMO3	RBTN3|RBTNL2|RHOM3|Rhom-3	LIM domain only 3	protein-coding
4415	chr5	7629682	7629710	+	0	NA	intron (NM_020546, intron 4 of 24)	intron (NM_020546, intron 4 of 24)	221907	NM_001089584	134121	Hs.709979	NM_001089584	ENSG00000215217	C5orf49	-	chromosome 5 open reading frame 49	protein-coding
894	chr11	51586154	51586650	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	71120	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
4850	chr6	61911226	61911327	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-372732	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
1298	chr12	104193455	104193547	+	0	NA	intron (NM_001031701, intron 4 of 13)	intron (NM_001031701, intron 4 of 13)	41474	NM_001031701	51559	Hs.48428	NM_016575	ENSG00000111696	NT5DC3	TU12B1-TY|TU12B1TY	5'-nucleotidase domain containing 3	protein-coding
3425	chr2	232113220	232113439	+	0	NA	intron (NM_001271466, intron 8 of 24)	AluSg|SINE|Alu	42416	NM_001271466	80210	Hs.162411	NM_025139	ENSG00000135931	ARMC9	ARM|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
140	chr1	56997527	56997772	+	0	NA	intron (NM_003713, intron 2 of 5)	intron (NM_003713, intron 2 of 5)	47608	NM_003713	8613	Hs.405156	NM_003713	ENSG00000162407	PLPP3	Dri42|LPP3|PAP2B|PPAP2B|VCIP	phospholipid phosphatase 3	protein-coding
2222	chr16	33867421	33867430	+	0	NA	Intergenic	(GAATG)n|Simple_repeat|Simple_repeat	95078	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
5915	chr9	66970956	66971748	+	0	NA	intron (NR_135597, intron 4 of 4).3	ALR/Alpha|Satellite|centr	48385	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
1900	chr14	86339368	86340023	+	0	NA	Intergenic	Intergenic	-61327	NR_110155	101928767	Hs.536380	NR_110155		LOC101928767	-	uncharacterized LOC101928767	ncRNA
6154	chrUn_gl000216	18669	18693	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
954	chr11	74361602	74361966	+	0	NA	Intergenic	Intergenic	58134	NR_046410	10714	Hs.82502	NM_006591	ENSG00000077514	POLD3	P66|P68|PPP1R128	DNA polymerase delta 3, accessory subunit	protein-coding
3460	chr20	7684057	7684690	+	0	NA	Intergenic	Intergenic	236720	NM_017545	54363	Hs.193640	NM_017545	ENSG00000101323	HAO1	GOX|GOX1|HAOX1	hydroxyacid oxidase 1	protein-coding
4524	chr5	123991361	123991697	+	0	NA	intron (NM_020747, intron 2 of 8)	intron (NM_020747, intron 2 of 8)	89276	NM_020747	57507	Hs.266616	NM_020747	ENSG00000168916	ZNF608	NY-REN-36	zinc finger protein 608	protein-coding
5376	chr7	107657665	107657787	+	0	NA	Intergenic	Intergenic	-13922	NM_002291	3912	Hs.650585	NM_002291	ENSG00000091136	LAMB1	CLM|LIS5	laminin subunit beta 1	protein-coding
801	chr11	17435504	17436290	+	0	NA	intron (NM_001287174, intron 19 of 38)	intron (NM_001287174, intron 19 of 38)	-25019	NM_001166290	3767	Hs.248141	NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3	potassium voltage-gated channel subfamily J member 11	protein-coding
4950	chr6	96531334	96531508	+	0	NA	intron (NM_006581, intron 1 of 2)	L3|LINE|CR1	67576	NM_006581	10690	Hs.49117	NM_006581	ENSG00000172461	FUT9	Fuc-TIX	fucosyltransferase 9	protein-coding
5393	chr7	111598299	111598351	+	0	NA	intron (NM_014705, intron 8 of 51)	intron (NM_014705, intron 8 of 51)	149764	NR_103806	100506413	Hs.677513	NR_103806	ENSG00000225572	DOCK4-AS1	-	DOCK4 antisense RNA 1	ncRNA
985	chr11	111162170	111162274	+	0	NA	Intergenic	Intergenic	-7049	NM_001271458	120376	Hs.31409	NM_001136105	ENSG00000214290	COLCA2	C11orf93|CASC13|LOH11CR1G	colorectal cancer associated 2	protein-coding
754	chr11	8311896	8311965	+	0	NA	Intergenic	Intergenic	-21748	NM_001270428	4004	Hs.654426	NM_002315	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1	protein-coding
3151	chr2	90375026	90375052	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1263155	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
5680	chr8	82130155	82130272	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-62505	NM_001444	2171	Hs.408061	NM_001444	ENSG00000164687	FABP5	E-FABP|EFABP|KFABP|PA-FABP|PAFABP	fatty acid binding protein 5	protein-coding
3061	chr2	68073289	68073449	+	0	NA	Intergenic	Intergenic	-20675	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
1563	chr13	101297549	101297803	+	0	NA	intron (NM_032813, intron 6 of 18)	intron (NM_032813, intron 6 of 18)	29513	NM_032813	84899	Hs.190983	NM_032813	ENSG00000125247	TMTC4	-	transmembrane and tetratricopeptide repeat containing 4	protein-coding
1003	chr11	113188344	113188596	+	0	NA	intron (NM_001318533, intron 2 of 21)	intron (NM_001318533, intron 2 of 21)	3219	NM_017868	54970	Hs.288772	NM_017868	ENSG00000149292	TTC12	TPARM	tetratricopeptide repeat domain 12	protein-coding
4147	chr4	49127778	49128798	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	139629	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
6223	chrUn_gl000225	21985	22127	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
6055	chr9	126404755	126404924	+	0	NA	intron (NM_024820, intron 9 of 20)	intron (NM_024820, intron 9 of 20)	-156938	NR_106972	102465688		NR_106972	ENSG00000274932	MIR7150	hsa-mir-7150	microRNA 7150	ncRNA
5845	chr9	7777753	7777806	+	0	NA	Intergenic	Intergenic	22027	NM_001318058	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
4355	chr4	154388861	154389160	+	0	NA	intron (NM_015196, intron 2 of 34)	intron (NM_015196, intron 2 of 34)	1512	NM_001131007	23240	Hs.732450	NM_015196	ENSG00000121210	KIAA0922	TMEM131L	KIAA0922	protein-coding
1800	chr14	68773757	68774170	+	0	NA	intron (NM_001321809, intron 8 of 11)	intron (NM_001321809, intron 8 of 11)	321541	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
4230	chr4	68264204	68264206	+	0	NA	Intergenic	Intergenic	23513	NR_110747	101927237	Hs.435644	NR_110747	ENSG00000250075	LOC101927237	-	uncharacterized LOC101927237	ncRNA
6365	chrY	13453925	13454104	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1079375	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1717	chr14	51849294	51849554	+	0	NA	Intergenic	Intergenic	49313	NR_038358	283553	Hs.325752	NR_038358	ENSG00000258479	LINC00640	-	long intergenic non-protein coding RNA 640	ncRNA
4349	chr4	154064616	154064825	+	0	NA	Intergenic	Intergenic	-9550	NM_001130067	23321	Hs.435711	NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
2557	chr18	3593902	3594161	+	0	NA	promoter-TSS (NR_024101)	promoter-TSS (NR_024101)	-81	NR_024101	649446	Hs.19872	NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
698	chr10	80230763	80230959	+	0	NA	Intergenic	MIR3|SINE|MIR	203776	NR_073447	414243	Hs.55047	NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
1634	chr14	20801720	20801808	+	0	NA	promoter-TSS (NM_182852)	promoter-TSS (NM_182852)	-293	NM_182849	57820	Hs.107003	NM_021178	ENSG00000100814	CCNB1IP1	C14orf18|HEI10	cyclin B1 interacting protein 1	protein-coding
6226	chrUn_gl000225	127532	127842	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
524	chr10	14690258	14690338	+	0	NA	intron (NM_001282695, intron 2 of 5)	intron (NM_001282695, intron 2 of 5)	-43881	NM_001282696	83641	Hs.446315	NM_031453	ENSG00000065809	FAM107B	C10orf45|HITS	family with sequence similarity 107 member B	protein-coding
1848	chr14	77506447	77506725	+	0	NA	promoter-TSS (NR_110554)	promoter-TSS (NR_110554)	-806	NR_110554	283575	Hs.651736	NR_110554	ENSG00000246548	LOC283575	-	uncharacterized LOC283575	ncRNA
2176	chr16	12413507	12413732	+	0	NA	intron (NM_032167, intron 15 of 20)	intron (NM_032167, intron 15 of 20)	343028	NM_032167	92017	Hs.458401	NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
4882	chr6	80094942	80094976	+	0	NA	Intergenic	Intergenic	-71858	NR_130915	80078		NR_130915		LCAL1	onco-lncRNA-27	lung cancer associated lncRNA 1	ncRNA
2714	chr18	45859757	45859994	+	0	NA	intron (NM_001318841, intron 2 of 4)	MIRc|SINE|MIR	75918	NM_001318841	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
4380	chr5	301758	302199	+	0	NA	intron (NM_001267557, intron 2 of 3)	intron (NM_001267557, intron 2 of 3)	-2313	NM_020731	57491	Hs.50823	NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl-hydrocarbon receptor repressor	protein-coding
4706	chr6	21188846	21189086	+	0	NA	intron (NM_017774, intron 13 of 15)	intron (NM_017774, intron 13 of 15)	323157	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
3418	chr2	230282325	230282553	+	0	NA	intron (NM_139072, intron 9 of 12)	intron (NM_139072, intron 9 of 12)	-146382	NM_001100818	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
598	chr10	39107097	39107156	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	117399	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
5793	chr8	125685872	125686049	+	0	NA	intron (NM_014751, intron 3 of 13)	intron (NM_014751, intron 3 of 13)	54788	NM_001282971	9788	Hs.336994	NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS1, I-BAR domain containing	protein-coding
2486	chr17	55044002	55044461	+	0	NA	Intergenic	PABL_A-int|LTR|ERV1	-5820	NM_004645	8161	Hs.532795	NM_004645	ENSG00000121058	COIL	CLN80|p80-coilin	coilin	protein-coding
780	chr11	13182168	13182398	+	0	NA	Intergenic	Intergenic	-116991	NM_001030273	406	Hs.65734	NM_001178	ENSG00000133794	ARNTL	BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5	aryl hydrocarbon receptor nuclear translocator like	protein-coding
6015	chr9	99997127	99997353	+	0	NA	intron (NR_136286, intron 1 of 17)	MIRb|SINE|MIR	-3468	NR_036527	57653	Hs.435629	NR_036527	ENSG00000255036	LOC100499484-C9ORF174	-	LOC100499484-C9orf174 readthrough	ncRNA
2317	chr16	52549754	52549845	+	0	NA	intron (NM_001080430, intron 1 of 6)	intron (NM_001080430, intron 1 of 6)	31007	NM_001080430	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
3277	chr2	159112123	159112242	+	0	NA	intron (NM_138803, intron 9 of 13)	intron (NM_138803, intron 9 of 13)	89020	NR_038850	554201	Hs.570262	NR_038850	ENSG00000227480	CCDC148-AS1	-	CCDC148 antisense RNA 1	ncRNA
3547	chr20	29829849	29830006	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-15540	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
5331	chr7	80260295	80260485	+	0	NA	intron (NM_001289911, intron 1 of 11)	intron (NM_001289911, intron 1 of 11)	-7442	NM_001001548	948	Hs.120949	NM_000072	ENSG00000135218	CD36	BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3	CD36 molecule	protein-coding
3490	chr20	15277899	15278167	+	0	NA	intron (NM_080676, intron 6 of 16)	intron (NM_080676, intron 6 of 16)	100529	NM_001033087	140733	Hs.661576	NM_080676	ENSG00000172264	MACROD2	C20orf133	MACRO domain containing 2	protein-coding
1433	chr13	26261272	26261335	+	0	NA	intron (NM_016529, intron 24 of 36)	intron (NM_016529, intron 24 of 36)	218391	NM_001313741	51761	Hs.444957	NM_016529	ENSG00000132932	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase phospholipid transporting 8A2	protein-coding
240	chr1	110679558	110679773	+	0	NA	Intergenic	Intergenic	-13471	NM_001010898	388662	Hs.128382	NM_001010898	ENSG00000197106	SLC6A17	MRT48|NTT4	solute carrier family 6 member 17	protein-coding
1666	chr14	31080435	31080538	+	0	NA	intron (NM_001308097, intron 11 of 13)	intron (NM_001308097, intron 11 of 13)	-10974	NM_001283033	23256	Hs.369168	NM_016106	ENSG00000092108	SCFD1	C14orf163|RA410|SLY1|SLY1P|STXBP1L2	sec1 family domain containing 1	protein-coding
6477	chrY	13869883	13869901	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	663497	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5462	chr7	130061835	130061958	+	0	NA	intron (NM_001257160, intron 2 of 2)	intron (NM_001257160, intron 2 of 2)	19155	NM_001257159	95681	Hs.368315	NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
2209	chr16	30143415	30143743	+	0	NA	Intergenic	MER50B|LTR|ERV1	-8949	NM_001109891	5595	Hs.861	NM_002746	ENSG00000102882	MAPK3	ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK	mitogen-activated protein kinase 3	protein-coding
230	chr1	106606602	106606665	+	0	NA	Intergenic	Intergenic	-445076	NR_125955	101928476	Hs.563856	NR_125954	ENSG00000230768	LINC01676	-	long intergenic non-protein coding RNA 1676	ncRNA
115	chr1	48116081	48116530	+	0	NA	Intergenic	Intergenic	-213316	NR_126355	102724077	Hs.159718	NR_126355		LINC01389	-	long intergenic non-protein coding RNA 1389	ncRNA
2374	chr16	78585953	78586086	+	0	NA	intron (NM_001291997, intron 7 of 7)	intron (NM_001291997, intron 7 of 7)	452709	NM_001291997	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
5882	chr9	20319938	20320036	+	0	NA	Intergenic	Intergenic	91249	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
922	chr11	62608559	62608927	+	0	NA	Intergenic	AluSc|SINE|Alu	-1115	NM_018093	54663	Hs.654620	NM_018093	ENSG00000133316	WDR74	-	WD repeat domain 74	protein-coding
2319	chr16	52586491	52586636	+	0	NA	intron (NR_033920, intron 3 of 3)	intron (NR_033920, intron 3 of 3)	-4849	NM_001146188	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
2628	chr18	31385559	31385816	+	0	NA	Intergenic	Intergenic	227146	NM_030632	80816	Hs.464876	NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	additional sex combs like 3, transcriptional regulator	protein-coding
2741	chr18	53073410	53074567	+	0	NA	intron (NM_001330604, intron 5 of 19)	intron (NM_001330604, intron 5 of 19)	-2762	NM_001306208	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
3740	chr22	16852386	16852387	+	0	NA	Intergenic	HSATII|Satellite|Satellite	221314	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
1072	chr11	129723897	129723946	+	0	NA	intron (NM_138788, intron 2 of 5)	intron (NM_138788, intron 2 of 5)	38245	NM_001331211	120224	Hs.504301	NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
2470	chr17	37926147	37926311	+	0	NA	intron (NM_001257413, intron 3 of 3)	intron (NM_001257413, intron 3 of 3)	8249	NM_001284516	22806	Hs.371680	NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
6035	chr9	112013459	112013860	+	0	NA	intron (NM_018424, intron 13 of 15)	intron (NM_018424, intron 13 of 15)	69585	NM_018424	54566	Hs.591901	NM_018424	ENSG00000095203	EPB41L4B	CG1|EHM2	erythrocyte membrane protein band 4.1 like 4B	protein-coding
1394	chr12	125071600	125071698	+	0	NA	Intergenic	Intergenic	-19639	NM_001206654	9612	Hs.137510	NM_006312	ENSG00000196498	NCOR2	CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1	nuclear receptor corepressor 2	protein-coding
2772	chr18	60822859	60823056	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	163656	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding
4878	chr6	79889818	79890107	+	0	NA	Intergenic	MamRep434|DNA|TcMar-Tigger	-53429	NR_040671	100288198	Hs.586270	NR_040671	ENSG00000270362	HMGN3-AS1	-	HMGN3 antisense RNA 1	ncRNA
1277	chr12	100646056	100646424	+	0	NA	non-coding (NR_135073, exon 5 of 11)	non-coding (NR_135073, exon 5 of 11)	14617	NM_152317	120863	Hs.653118	NM_152317	ENSG00000166153	DEPDC4	DEP.4	DEP domain containing 4	protein-coding
2251	chr16	33974150	33974780	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-11962	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
3456	chr20	4856460	4856582	+	0	NA	intron (NM_203327, intron 9 of 16)	intron (NM_203327, intron 9 of 16)	-52230	NM_014737	9770	Hs.631504	NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
1086	chr12	2431853	2432252	+	0	NA	intron (NM_001129830, intron 3 of 47)	MIR|SINE|MIR	53110	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
5854	chr9	8095641	8095724	+	0	NA	Intergenic	Intergenic	-295876	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
5839	chr9	4499925	4500192	+	0	NA	intron (NM_004170, intron 1 of 11)	intron (NM_004170, intron 1 of 11)	9631	NM_004170	6505	Hs.444915	NM_004170	ENSG00000106688	SLC1A1	DCBXA|EAAC1|EAAT3|SCZD18	solute carrier family 1 member 1	protein-coding
564	chr10	38817985	38818160	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	100998	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
5889	chr9	37325104	37325182	+	0	NA	intron (NM_001289121, intron 5 of 8)	intron (NM_001289121, intron 5 of 8)	-97564	NM_012203	9380	Hs.155742	NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
4488	chr5	73502476	73502556	+	0	NA	Intergenic	Intergenic	101634	NR_105009	102503429	Hs.519391	NR_105009	ENSG00000248942	LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA
3070	chr2	68181128	68181770	+	0	NA	Intergenic	Intergenic	108710	NM_173177	10438	Hs.602900	NM_006333	ENSG00000197223	C1D	LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
2562	chr18	3691916	3692197	+	0	NA	intron (NM_001308390, intron 4 of 10)	intron (NM_001308390, intron 4 of 10)	88321	NR_119377	84777	Hs.659053	NM_032691		DLGAP1-AS2	-	DLGAP1 antisense RNA 2	ncRNA
3951	chr3	125605081	125605277	+	0	NA	promoter-TSS (NR_125395)	promoter-TSS (NR_125395)	-259	NR_125395	101927056	Hs.744344	NR_125395	ENSG00000241288	LOC101927056	-	uncharacterized LOC101927056	ncRNA
3094	chr2	89830670	89830938	+	0	NA	Intergenic	HSATII|Satellite|Satellite	718920	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
6294	chrX	61689663	61690291	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	881241	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
1967	chr14	99264415	99264591	+	0	NA	Intergenic	Intergenic	86553	NM_001346978	283598	Hs.448754	NM_182560	ENSG00000176605	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
2850	chr19	44032143	44032365	+	0	NA	promoter-TSS (NM_001320867)	promoter-TSS (NM_001320867)	-846	NM_001320867	23474	Hs.7486	NM_014297	ENSG00000105755	ETHE1	HSCO|YF13H12	ETHE1, persulfide dioxygenase	protein-coding
657	chr10	42818020	42818028	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	45469	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
5616	chr8	43096830	43097088	+	0	NA	Intergenic	SAR|Satellite|Satellite	-50626	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
1865	chr14	79092637	79092792	+	0	NA	intron (NM_004796, intron 1 of 16)	intron (NM_004796, intron 1 of 16)	222640	NM_004796	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
1783	chr14	67945119	67945461	+	0	NA	intron (NM_182526, intron 2 of 2)	L2c|LINE|L2	-36643	NR_049879	100847064		NR_049879	ENSG00000265993	MIR5694	-	microRNA 5694	ncRNA
4642	chr6	5729071	5729351	+	0	NA	intron (NM_006567, intron 6 of 6)	intron (NM_006567, intron 6 of 6)	-33706	NR_110842	101927950	Hs.571136	NR_110842	ENSG00000270174	LOC101927950	-	uncharacterized LOC101927950	ncRNA
503	chr1	234860407	234860724	+	0	NA	intron (NR_038856, intron 1 of 2)	intron (NR_038856, intron 1 of 2)	776	NR_038856	100506810	Hs.586634	NR_038856	ENSG00000227630	LINC01132	-	long intergenic non-protein coding RNA 1132	ncRNA
5383	chr7	107904305	107904502	+	0	NA	intron (NM_005010, intron 3 of 27)	intron (NM_005010, intron 3 of 27)	-23789	NM_001037132	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
4181	chr4	49157569	49157658	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	168954	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
4126	chr4	40665176	40665390	+	0	NA	Intergenic	Intergenic	-33400	NM_001098634	54502	Hs.518727	NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
5769	chr8	109773380	109773439	+	0	NA	intron (NR_136411, intron 1 of 3)	MIR|SINE|MIR	26435	NM_153015	157753	Hs.99439	NM_153015	ENSG00000164841	TMEM74	NET36	transmembrane protein 74	protein-coding
1483	chr13	49403586	49403855	+	0	NA	Intergenic	Intergenic	-146328	NM_001079673	22862	Hs.508010	NM_014923	ENSG00000102531	FNDC3A	FNDC3|HUGO|bA203I16.1|bA203I16.5	fibronectin type III domain containing 3A	protein-coding
4069	chr3	193923385	193923503	+	0	NA	intron (NR_125403, intron 1 of 2)	(CA)n|Simple_repeat|Simple_repeat	652	NR_125404	100505920	Hs.436654	NR_125403	ENSG00000225742	LINC02036	-	long intergenic non-protein coding RNA 2036	ncRNA
5090	chr6	168548278	168548415	+	0	NA	Intergenic	Intergenic	-66109	NR_110312	79981	Hs.266746	NM_024919	ENSG00000153303	FRMD1	bA164L23.1	FERM domain containing 1	protein-coding
3800	chr22	40197027	40197184	+	0	NA	intron (NM_152512, intron 5 of 6)	intron (NM_152512, intron 5 of 6)	92689	NM_152512	150350	Hs.474869	NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
1996	chr15	39042866	39043030	+	0	NA	Intergenic	Intergenic	54149	NM_207444	400359	Hs.448785	NM_207444	ENSG00000175779	C15orf53	-	chromosome 15 open reading frame 53	protein-coding
4695	chr6	20745201	20745497	+	0	NA	intron (NM_017774, intron 6 of 15)	intron (NM_017774, intron 6 of 15)	210661	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
4584	chr5	149317616	149317823	+	0	NA	intron (NM_000440, intron 1 of 21)	intron (NM_000440, intron 1 of 21)	-5179	NR_110534	644762	Hs.730366	NR_110534		LOC644762	-	mitochondrial fission factor pseudogene	pseudo
1036	chr11	122766267	122766659	+	0	NA	intron (NM_024806, intron 2 of 8)	intron (NM_024806, intron 2 of 8)	13227	NM_199124	79864	Hs.164705	NM_024806	ENSG00000109944	C11orf63	-	chromosome 11 open reading frame 63	protein-coding
5781	chr8	120984540	120984856	+	0	NA	intron (NM_022783, intron 4 of 8)	AluSz|SINE|Alu	98803	NM_022783	64798	Hs.112981	NM_022783	ENSG00000155792	DEPTOR	DEP.6|DEPDC6	DEP domain containing MTOR interacting protein	protein-coding
6143	chrUn_gl000216	11161	11956	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
3492	chr20	17321882	17322016	+	0	NA	intron (NM_002594, intron 2 of 11)	L1M6|LINE|L1	114352	NM_002594	5126	Hs.315186	NM_002594	ENSG00000125851	PCSK2	NEC 2|NEC-2|NEC2|PC2|SPC2	proprotein convertase subtilisin/kexin type 2	protein-coding
1265	chr12	97758714	97758995	+	0	NA	Intergenic	MIRc|SINE|MIR	-99945	NR_024037	196475	Hs.652568	NR_024037	ENSG00000255794	RMST	LINC00054|NCRMS|NCRNA00054	rhabdomyosarcoma 2 associated transcript (non-protein coding)	ncRNA
2065	chr15	66124794	66124915	+	0	NA	Intergenic	Intergenic	-36943	NM_001206836	8766	Hs.321541	NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
4150	chr4	49131496	49131961	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	143069	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
544	chr10	38777898	38777907	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	60828	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
5285	chr7	68235132	68235639	+	0	NA	Intergenic	Intergenic	750145	NR_120514	102723427	Hs.583491	NR_120514	ENSG00000225209	LOC102723427	-	uncharacterized LOC102723427	ncRNA
4696	chr6	20745498	20745708	+	0	NA	intron (NM_017774, intron 6 of 15)	intron (NM_017774, intron 6 of 15)	210915	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
4370	chr4	184492043	184492445	+	0	NA	Intergenic	AluY|SINE|Alu	65009	NM_001291959	3622	Hs.107153	NM_001564	ENSG00000168556	ING2	ING1L|p33ING2	inhibitor of growth family member 2	protein-coding
4527	chr5	124610840	124611079	+	0	NA	intron (NR_109882, intron 4 of 5)	intron (NR_109882, intron 4 of 5)	-217995	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
3253	chr2	146188885	146188893	+	0	NA	Intergenic	Intergenic	763355	NR_033870	401014	Hs.742290	NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
4634	chr6	1757419	1757812	+	0	NA	intron (NM_001500, intron 7 of 10)	intron (NM_001500, intron 7 of 10)	146934	NM_001453	2296	Hs.348883	NM_001453	ENSG00000054598	FOXC1	ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3	forkhead box C1	protein-coding
1196	chr12	49608952	49609170	+	0	NA	Intergenic	Intergenic	-12648	NM_001303117	84790	Hs.652390	NM_032704	ENSG00000167553	TUBA1C	TUBA6|bcm948	tubulin alpha 1c	protein-coding
1114	chr12	12486053	12486419	+	0	NA	intron (NM_018050, intron 3 of 3)	AluJb|SINE|Alu	16933	NM_018050	54682	Hs.591145	NM_018050	ENSG00000111261	MANSC1	9130403P13Rik|LOH12CR3	MANSC domain containing 1	protein-coding
2389	chr16	84172464	84172694	+	0	NA	intron (NM_031463, intron 1 of 5)	intron (NM_031463, intron 1 of 5)	6221	NM_031463	83693	Hs.555992	NM_031463	ENSG00000103160	HSDL1	SDR12C3	hydroxysteroid dehydrogenase like 1	protein-coding
6452	chrY	13852105	13852172	+	0	NA	Intergenic	Intergenic	681251	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4497	chr5	78204518	78204581	+	0	NA	intron (NM_198709, intron 5 of 7)	intron (NM_198709, intron 5 of 7)	77217	NM_198709	411	Hs.149103	NM_000046	ENSG00000113273	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
3657	chr21	10856805	10856989	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	134046	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
239	chr1	110679344	110679557	+	0	NA	Intergenic	Intergenic	-13686	NM_001010898	388662	Hs.128382	NM_001010898	ENSG00000197106	SLC6A17	MRT48|NTT4	solute carrier family 6 member 17	protein-coding
5783	chr8	121873748	121874020	+	0	NA	Intergenic	L1PBa|LINE|L1	-49575	NM_021021	6641	Hs.46701	NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
122	chr1	48992037	48992358	+	0	NA	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-54317	NM_019073	54558	Hs.538103	NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
2635	chr18	31895728	31895754	+	0	NA	Intergenic	Intergenic	-92226	NM_001198546	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
5421	chr7	125416991	125417254	+	0	NA	Intergenic	Intergenic	-512777	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
878	chr11	51579768	51579894	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	64549	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
269	chr1	121352817	121353460	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	92228	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
363	chr1	182144474	182144542	+	0	NA	Intergenic	AluJb|SINE|Alu	-113661	NM_001009992	127665	Hs.684328	NM_001009992	ENSG00000179930	ZNF648	-	zinc finger protein 648	protein-coding
2277	chr16	46430903	46435599	+	0	NA	Intergenic	HSATII|Satellite|Satellite	169758	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
4264	chr4	83956136	83956307	+	0	NA	promoter-TSS (NM_001258006)	promoter-TSS (NM_001258006)	-18	NM_016129	51138	Hs.190384	NM_016129	ENSG00000138663	COPS4	CSN4|SGN4	COP9 signalosome subunit 4	protein-coding
4573	chr5	142602333	142602627	+	0	NA	3' UTR (NM_001135608, exon 23 of 23)	3' UTR (NM_001135608, exon 23 of 23)	30415	NR_046816	100874372	Hs.666717	NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
2353	chr16	71018925	71019118	+	0	NA	intron (NM_001270974, intron 28 of 85)	intron (NM_001270974, intron 28 of 85)	-183960	NM_018052	55697	Hs.445061	NM_018052	ENSG00000103043	VAC14	ArPIKfyve|SNDC|TAX1BP2|TRX	Vac14, PIKFYVE complex component	protein-coding
4140	chr4	49119612	49119650	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	130972	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3198	chr2	99526233	99526363	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	26386	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211 like	protein-coding
3215	chr2	109816058	109816065	+	0	NA	intron (NM_001099289, intron 1 of 9)	(GAATG)n|Satellite|Satellite	-58017	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
5834	chr9	2299028	2299606	+	0	NA	Intergenic	Intergenic	140861	NM_001289400	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
2159	chr16	4103646	4104281	+	0	NA	intron (NM_001116, intron 2 of 10)	intron (NM_001116, intron 2 of 10)	62223	NM_001116	115	Hs.391860	NM_001116	ENSG00000162104	ADCY9	AC9|ACIX	adenylate cyclase 9	protein-coding
6161	chrUn_gl000216	22730	22760	+	0	NA	NA	Intergenic	NA	NA								
3059	chr2	68055146	68055579	+	0	NA	Intergenic	Intergenic	-2668	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
5243	chr7	61753697	61753752	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1010710	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
4876	chr6	71549007	71549046	+	0	NA	intron (NM_001281440, intron 7 of 10)	MLT1I-int|LTR|ERVL-MaLR	117762	NM_080742	135152	Hs.713609	NM_080742	ENSG00000112309	B3GAT2	GLCATS	beta-1,3-glucuronyltransferase 2	protein-coding
4834	chr6	53792174	53792271	+	0	NA	Intergenic	Intergenic	-2558	NR_125842	101927189	Hs.453592	NR_125842	ENSG00000236740	LOC101927189	-	uncharacterized LOC101927189	ncRNA
4725	chr6	21750444	21750533	+	0	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	83813	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
1449	chr13	32603027	32603184	+	0	NA	intron (NR_103839, intron 1 of 3)	intron (NR_103839, intron 1 of 3)	-2332	NM_023037	10129	Hs.507669	NM_023037	ENSG00000073910	FRY	13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1	FRY microtubule binding protein	protein-coding
4538	chr5	125055874	125056025	+	0	NA	Intergenic	Intergenic	226995	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
2873	chr19_gl000208_random	11	502	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
4062	chr3	189022321	189023093	+	0	NA	intron (NM_198485, intron 4 of 5)	intron (NM_198485, intron 4 of 5)	-64324	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
6096	chr9_gl000199_random	39816	39966	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
1314	chr12	106100590	106100716	+	0	NA	intron (NR_110111, intron 1 of 1)	intron (NR_110111, intron 1 of 1)	101	NR_110111	101929110	Hs.145944	NR_110108	ENSG00000257859	CASC18	-	cancer susceptibility candidate 18 (non-protein coding)	ncRNA
3591	chr21	10085829	10086068	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-117354	NR_038328	100132288	Hs.487562	NM_174948	ENSG00000188681	TEKT4P2	MAFIPL|TEKT4P	tektin 4 pseudogene 2	pseudo
2748	chr18	55523310	55523449	+	0	NA	Intergenic	Intergenic	-53052	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
1798	chr14	68758889	68759062	+	0	NA	intron (NM_001321809, intron 8 of 11)	intron (NM_001321809, intron 8 of 11)	336529	NR_135816	100996664		NR_135816		LOC100996664	-	uncharacterized LOC100996664	ncRNA
5102	chr6	170854744	170855028	+	0	NA	intron (NM_002793, intron 3 of 5)	intron (NM_002793, intron 3 of 5)	7531	NM_002793	5689	Hs.352768	NM_002793	ENSG00000008018	PSMB1	HC5|PMSB1|PSC5	proteasome subunit beta 1	protein-coding
2535	chr17	75733977	75734197	+	0	NA	Intergenic	Intergenic	-9446	NR_104134	100132174	Hs.640110	NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
522	chr10	1016426	1016664	+	0	NA	Intergenic	Intergenic	-17804	NM_012341	23560	Hs.215766	NM_012341	ENSG00000107937	GTPBP4	CRFG|NGB|NOG1	GTP binding protein 4	protein-coding
1632	chr14	20801415	20801524	+	0	NA	promoter-TSS (NM_182852)	promoter-TSS (NM_182852)	2	NM_021178	57820	Hs.107003	NM_021178	ENSG00000100814	CCNB1IP1	C14orf18|HEI10	cyclin B1 interacting protein 1	protein-coding
1423	chr13	22214075	22214124	+	0	NA	Intergenic	Intergenic	-31116	NM_002010	2254	Hs.111	NM_002010	ENSG00000102678	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
2412	chr17	6067367	6067886	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	93692	NM_015253	23302	Hs.370166	NM_015253	ENSG00000179314	WSCD1	-	WSC domain containing 1	protein-coding
3352	chr2	207094862	207095009	+	0	NA	intron (NR_104359, intron 1 of 5)	intron (NR_104359, intron 1 of 5)	-12164	NM_005279	2825	Hs.184907	NM_005279	ENSG00000183671	GPR1	-	G protein-coupled receptor 1	protein-coding
667	chr10	70355811	70356438	+	0	NA	intron (NM_030625, intron 2 of 11)	intron (NM_030625, intron 2 of 11)	36007	NM_030625	80312	Hs.258855	NM_030625	ENSG00000138336	TET1	CXXC6|LCX|MLL-TET1|TET1-MLL|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
1280	chr12	101861655	101861779	+	0	NA	Intergenic	AluSx|SINE|Alu	-7482	NM_152323	121599	Hs.577097	NM_152323	ENSG00000166211	SPIC	SPI-C	Spi-C transcription factor	protein-coding
313	chr1	149035145	149035168	+	0	NA	intron (NR_104217, intron 2 of 17).2	HSATII|Satellite|Satellite	74569	NR_104217	101929780	Hs.534675	NR_104217	ENSG00000272150	NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family member 25, pseudogene	pseudo
2017	chr15	47624633	47624834	+	0	NA	intron (NM_001198999, intron 1 of 19)	intron (NM_001198999, intron 1 of 19)	148330	NM_001198999	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding
4322	chr4	139832023	139832103	+	0	NA	intron (NR_133945, intron 2 of 2)	intron (NR_133945, intron 2 of 2)	101737	NR_133945	105377448	Hs.200280	NR_133945	ENSG00000250195	LOC105377448	-	uncharacterized LOC105377448	ncRNA
4031	chr3	177519905	177519905	+	0	NA	Intergenic	Intergenic	-14748	NR_110826	102724550	Hs.570526	NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
3023	chr2	54214464	54214597	+	0	NA	intron (NM_001320587, intron 2 of 5)	intron (NM_001320587, intron 2 of 5)	16290	NM_001320586	98	Hs.516173	NM_138448	ENSG00000170634	ACYP2	ACYM|ACYP	acylphosphatase 2	protein-coding
2661	chr18	35568022	35568449	+	0	NA	Intergenic	Intergenic	331137	NR_036202	100422857		NR_036202	ENSG00000266530	MIR4318	-	microRNA 4318	ncRNA
2884	chr2	1184009	1184123	+	0	NA	intron (NM_018968, intron 8 of 16)	L1MEe|LINE|L1	-233167	NM_001206744	7173	Hs.467554	NM_000547	ENSG00000115705	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
5712	chr8	94372492	94372568	+	0	NA	intron (NR_033858, intron 10 of 10)	intron (NR_033858, intron 10 of 10)	-193451	NM_001242668	389676	Hs.386711	NM_001242668		C8orf87	-	chromosome 8 open reading frame 87	protein-coding
3841	chr3	29197553	29197676	+	0	NA	Intergenic	Intergenic	124816	NR_109804	100873979	Hs.99391	NR_109804		RBMS3-AS3	-	RBMS3 antisense RNA 3	ncRNA
1324	chr12	106572875	106573027	+	0	NA	Intergenic	Intergenic	-39140	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
3077	chr2	69444285	69444833	+	0	NA	intron (NM_032208, intron 17 of 17)	intron (NM_032208, intron 17 of 17)	113745	NR_036073	100423030		NR_036073	ENSG00000266649	MIR3126	mir-3126	microRNA 3126	ncRNA
3305	chr2	172410362	172410383	+	0	NA	intron (NM_024843, intron 3 of 3)	MER51A|LTR|ERV1	31506	NM_001127383	79901	Hs.221941	NM_024843	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
3433	chr2	235007759	235007790	+	0	NA	Intergenic	Intergenic	48428	NM_006944	6694	Hs.444488	NM_006944	ENSG00000072080	SPP2	SPP-24|SPP24	secreted phosphoprotein 2	protein-coding
5496	chr7	144802982	144803079	+	0	NA	Intergenic	Intergenic	-269884	NM_001042482	27010	Hs.660232	NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
5021	chr6	111973022	111973236	+	0	NA	Intergenic	Intergenic	-45652	NM_147686	10758	Hs.561514	NM_147200	ENSG00000056972	TRAF3IP2	ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13	TRAF3 interacting protein 2	protein-coding
4202	chr4	49643205	49643976	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	654931	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
459	chr1	218423398	218423478	+	0	NA	Intergenic	Intergenic	-35191	NM_016052	51018	Hs.660109	NM_016052	ENSG00000067533	RRP15	CGI-115|KIAA0507	ribosomal RNA processing 15 homolog	protein-coding
3477	chr20	11830006	11830188	+	0	NA	intron (NR_110635, intron 1 of 1)	intron (NR_110635, intron 1 of 1)	21266	NR_110635	728450	Hs.560990	NR_110635	ENSG00000228422	LINC00687	C20orf61|dJ1012F16.1	long intergenic non-protein coding RNA 687	ncRNA
4267	chr4	87994970	87995209	+	0	NA	intron (NM_001313959, intron 3 of 19)	intron (NM_001313959, intron 3 of 19)	66936	NM_005935	4299	Hs.480190	NM_005935	ENSG00000172493	AFF1	AF4|MLLT2|PBM1	AF4/FMR2 family member 1	protein-coding
3715	chr21	41048099	41048326	+	0	NA	Intergenic	Intergenic	18965	NM_033170	10317	Hs.733638	NM_006057	ENSG00000183778	B3GALT5	B3GalT-V|B3GalTx|B3T5|GLCT5|beta-1,3-GalTase 5|beta-3-Gx-T5|beta3Gal-T5	beta-1,3-galactosyltransferase 5	protein-coding
1495	chr13	73748030	73748059	+	0	NA	Intergenic	Intergenic	115114	NM_001730	688	Hs.508234	NM_001730	ENSG00000102554	KLF5	BTEB2|CKLF|IKLF	Kruppel like factor 5	protein-coding
1753	chr14	61612145	61612464	+	0	NA	Intergenic	Intergenic	136226	NM_001017970	161291	Hs.146180	NM_001017970	ENSG00000182107	TMEM30B	CDC50B	transmembrane protein 30B	protein-coding
6138	chrUn_gl000216	9497	9795	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
3187	chr2	97600623	97600885	+	0	NA	intron (NM_001122646, intron 8 of 16)	intron (NM_001122646, intron 8 of 16)	15911	NR_110209	101927053	Hs.677537	NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
2688	chr18	42526565	42526790	+	0	NA	intron (NM_015559, intron 3 of 5)	L2a|LINE|L2	23454	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
4367	chr4	182425899	182426156	+	0	NA	Intergenic	Intergenic	-345725	NR_033918	728081	Hs.535735	NR_033918	ENSG00000248197	LINC00290	NCRNA00290	long intergenic non-protein coding RNA 290	ncRNA
5055	chr6	142644713	142644944	+	0	NA	intron (NM_001032394, intron 2 of 24)	Tigger3a|DNA|TcMar-Tigger	21772	NM_001032395	57211	Hs.743302	NM_020455	ENSG00000112414	ADGRG6	APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR	adhesion G protein-coupled receptor G6	protein-coding
1938	chr14	93315527	93316073	+	0	NA	Intergenic	Intergenic	55224	NM_005113	9950	Hs.104320	NM_005113	ENSG00000066455	GOLGA5	GOLIM5|RFG5|ret-II	golgin A5	protein-coding
1919	chr14	89770222	89770735	+	0	NA	intron (NM_001085471, intron 3 of 6)	intron (NM_001085471, intron 3 of 6)	112976	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
2756	chr18	55582371	55582513	+	0	NA	Intergenic	Intergenic	-112115	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
4244	chr4	77176584	77176773	+	0	NA	intron (NM_001242939, intron 1 of 6)	MIR3|SINE|MIR	3825	NM_001136570	100129583	Hs.720509	NM_001136570	ENSG00000189157	FAM47E	-	family with sequence similarity 47 member E	protein-coding
5545	chr8	9013117	9013386	+	0	NA	Intergenic	Intergenic	-4099	NM_001201329	79660	Hs.458513	NM_024607	ENSG00000173281	PPP1R3B	GL|PPP1R4|PTG	protein phosphatase 1 regulatory subunit 3B	protein-coding
3107	chr2	89853632	89853715	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	741789	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
5277	chr7	64954506	64954649	+	0	NA	Intergenic	(CATTC)n|Simple_repeat|Simple_repeat	115865	NM_007139	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
3441	chr2	236877657	236877991	+	0	NA	intron (NM_001037131, intron 13 of 17)	intron (NM_001037131, intron 13 of 17)	198828	NM_001485	2637	Hs.184945	NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
404	chr1	203621049	203621175	+	0	NA	intron (NM_001684, intron 1 of 20)	AluSx1|SINE|Alu	25197	NM_001684	493	Hs.343522	NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
516	chr1	246362649	246362775	+	0	NA	intron (NM_001167740, intron 5 of 11)	intron (NM_001167740, intron 5 of 11)	218002	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
2004	chr15	40384425	40384633	+	0	NA	intron (NM_001003943, intron 3 of 3)	intron (NM_001003943, intron 3 of 3)	13758	NM_001003942	90427	Hs.591104	NM_033503	ENSG00000104081	BMF	-	Bcl2 modifying factor	protein-coding
1813	chr14	70163142	70163484	+	0	NA	intron (NM_014734, intron 2 of 5)	intron (NM_014734, intron 2 of 5)	-70491	NM_006925	6430	Hs.632326	NM_006925	ENSG00000100650	SRSF5	HRS|SFRS5|SRP40	serine and arginine rich splicing factor 5	protein-coding
4754	chr6	24720892	24721077	+	0	NA	Intergenic	CpG	-1581	NM_030939	81688	Hs.744857	NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
3861	chr3	72712619	72712637	+	0	NA	non-coding (NR_135531, exon 2 of 2)	non-coding (NR_135531, exon 2 of 2)	772	NR_135531	105377162	Hs.123457	NR_135531		LOC105377162	-	uncharacterized LOC105377162	ncRNA
6128	chrUn_gl000216	6329	6331	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
702	chr10	80319166	80319623	+	0	NA	Intergenic	MIR3|SINE|MIR	292309	NR_073447	414243	Hs.55047	NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
5649	chr8	65179141	65179352	+	0	NA	intron (NR_125826, intron 1 of 4)	intron (NR_125826, intron 1 of 4)	101869	NR_125826	102724623	Hs.586375	NR_125826	ENSG00000253554	LOC102724623	-	uncharacterized LOC102724623	ncRNA
4383	chr5	303168	303383	+	0	NA	intron (NM_001267557, intron 2 of 3)	intron (NM_001267557, intron 2 of 3)	-1016	NM_020731	57491	Hs.50823	NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl-hydrocarbon receptor repressor	protein-coding
2297	chr16	51826942	51826984	+	0	NA	Intergenic	Intergenic	30533	NR_110916	101927364	Hs.133120	NR_110916	ENSG00000260057	LINC01571	-	long intergenic non-protein coding RNA 1571	ncRNA
2163	chr16	8814406	8814427	+	0	NA	promoter-TSS (NM_001127448)	promoter-TSS (NM_001127448)	-157	NM_001127448	18	Hs.336768	NM_000663	ENSG00000183044	ABAT	GABA-AT|GABAT|NPD009	4-aminobutyrate aminotransferase	protein-coding
2214	chr16	33865706	33865709	+	0	NA	Intergenic	(GAGTG)n|Simple_repeat|Simple_repeat	96796	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
357	chr1	174924441	174924625	+	0	NA	intron (NM_001330989, intron 3 of 9)	intron (NM_001330989, intron 3 of 9)	-1135	NR_121196	101928696	Hs.666680	NR_121196	ENSG00000229531	LOC101928696	-	uncharacterized LOC101928696	ncRNA
4679	chr6	19602540	19602631	+	0	NA	Intergenic	Intergenic	152533	NR_134615	105374960	Hs.519913	NR_134615		LOC105374960	-	uncharacterized LOC105374960	ncRNA
3236	chr2	130726550	130726877	+	0	NA	intron (NR_036537, intron 4 of 5)	L1ME3C|LINE|L1	-10522	NM_032144	84084	Hs.591552	NM_032144	ENSG00000222014	RAB6C	WTH3	RAB6C, member RAS oncogene family	protein-coding
1941	chr14	93353007	93353544	+	0	NA	Intergenic	MIR|SINE|MIR	20552	NR_135253	101929002	Hs.639356	NR_135253	ENSG00000258499	LOC101929002	-	uncharacterized LOC101929002	ncRNA
4008	chr3	171942725	171942839	+	0	NA	intron (NM_001135095, intron 3 of 25)	intron (NM_001135095, intron 3 of 25)	184438	NM_001135095	64778	Hs.744888	NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
2826	chr19	14665382	14665621	+	0	NA	intron (NM_001321170, intron 2 of 13)	intron (NM_001321170, intron 2 of 13)	17388	NM_004146	4713	Hs.532853	NM_004146	ENSG00000099795	NDUFB7	B18|CI-B18	NADH:ubiquinone oxidoreductase subunit B7	protein-coding
455	chr1	214408032	214408167	+	0	NA	Intergenic	Intergenic	-46466	NM_020197	56950	Hs.66170	NM_020197	ENSG00000143499	SMYD2	HSKM-B|KMT3C|ZMYND14	SET and MYND domain containing 2	protein-coding
5395	chr7	111598545	111598595	+	0	NA	intron (NM_014705, intron 8 of 51)	intron (NM_014705, intron 8 of 51)	150009	NR_103806	100506413	Hs.677513	NR_103806	ENSG00000225572	DOCK4-AS1	-	DOCK4 antisense RNA 1	ncRNA
4895	chr6	81348119	81348129	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	531797	NM_001318975	594	Hs.654441	NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
4472	chr5	62958417	62958948	+	0	NA	Intergenic	Intergenic	299437	NM_000524	3350	Hs.247940	NM_000524	ENSG00000178394	HTR1A	5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD	5-hydroxytryptamine receptor 1A	protein-coding
2132	chr15	93375458	93375593	+	0	NA	Intergenic	Intergenic	36811	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
3181	chr2	92300029	92300451	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	171081	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
2612	chr18	25441724	25441747	+	0	NA	Intergenic	Intergenic	174814	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
5180	chr7	30265300	30265420	+	0	NA	Intergenic	Intergenic	-58563	NM_147128	223082	Hs.263912	NM_147128	ENSG00000180233	ZNRF2	RNF202	zinc and ring finger 2	protein-coding
6115	chrUn_gl000212	43820	43920	+	0	NA	intron (NR_027278, intron 1 of 7)	HSATI|Satellite|Satellite	19821	NR_027278	26080	Hs.448583	NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
5537	chr8	5925155	5925675	+	0	NA	Intergenic	Intergenic	338654	NR_040040	100287015	Hs.156928	NR_040040	ENSG00000246089	LOC100287015	-	uncharacterized LOC100287015	ncRNA
3751	chr22	18879939	18880035	+	0	NA	intron (NR_136571, intron 1 of 11)	AluSc8|SINE|Alu	1957	NR_136571	100996432	Hs.631668	NR_136571		LINC01663	-	long intergenic non-protein coding RNA 1663	ncRNA
1889	chr14	85320944	85321353	+	0	NA	Intergenic	Intergenic	-532471	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
2272	chr16	46410249	46411712	+	0	NA	Intergenic	HSATII|Satellite|Satellite	192029	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
2692	chr18	42711453	42711781	+	0	NA	Intergenic	L2c|LINE|L2	-81330	NM_001242692	8170	Hs.710927	NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
5674	chr8	81243851	81244448	+	0	NA	Intergenic	Intergenic	90525	NR_049894	100847056		NR_049894	ENSG00000265588	MIR5708	-	microRNA 5708	ncRNA
2646	chr18	33655866	33655942	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-8347	NM_001303413	55197	Hs.464912	NM_018170	ENSG00000141425	RPRD1A	HsT3101|P15RS	regulation of nuclear pre-mRNA domain containing 1A	protein-coding
10	chr1	725270	725353	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-11243	NR_033908	100288069	Hs.527521	NR_033908		LOC100288069	-	uncharacterized LOC100288069	ncRNA
4762	chr6	24919489	24920051	+	0	NA	intron (NM_001286446, intron 1 of 13)	intron (NM_001286446, intron 1 of 13)	-8372	NM_001346031	9750	Hs.559459	NM_014722	ENSG00000111913	FAM65B	C6orf32|DFNB104|DIFF40|DIFF48|MYONAP|PL48	family with sequence similarity 65 member B	protein-coding
550	chr10	38778211	38778279	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	61171	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
2083	chr15	70380728	70381081	+	0	NA	intron (NM_001105192, intron 4 of 19)	intron (NM_001105192, intron 4 of 19)	6220	NM_001282982	7090	Hs.287362	NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	transducin like enhancer of split 3	protein-coding
5574	chr8	27686580	27686745	+	0	NA	intron (NM_018492, intron 2 of 7)	L1MEc|LINE|L1	8950	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|HEL164|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
1081	chr11	134243257	134243536	+	0	NA	intron (NM_138342, intron 15 of 19)	intron (NM_138342, intron 15 of 19)	38416	NM_054025	27087	Hs.381050	NM_018644	ENSG00000109956	B3GAT1	CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1	beta-1,3-glucuronyltransferase 1	protein-coding
4769	chr6	33313015	33313151	+	0	NA	Intergenic	Intergenic	-22290	NM_001141969	1616	Hs.336916	NM_001350	ENSG00000204209	DAXX	BING2|DAP6|EAP1	death domain associated protein	protein-coding
1736	chr14	57485060	57485120	+	0	NA	Intergenic	L2a|LINE|L2	205189	NR_029385	100309464	Hs.637962	NR_029385	ENSG00000248550	OTX2-AS1	OTX2OS1	OTX2 antisense RNA 1 (head to head)	ncRNA
958	chr11	75350968	75351176	+	0	NA	intron (NM_207577, intron 1 of 2)	intron (NM_207577, intron 1 of 2)	28407	NM_207577	4135	Hs.585540	NM_033063	ENSG00000171533	MAP6	MAP6-N|MTAP6|N-STOP|STOP	microtubule associated protein 6	protein-coding
592	chr10	39093809	39093857	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	104106	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
3299	chr2	166681784	166681973	+	0	NA	Intergenic	HAL1|LINE|L1	-31075	NM_004482	2591	Hs.170986	NM_004482	ENSG00000115339	GALNT3	GalNAc-T3|HFTC|HHS	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding
5445	chr7	129912809	129913107	+	0	NA	exon (NM_001869, exon 5 of 11)	exon (NM_001869, exon 5 of 11)	6255	NM_001869	1358	Hs.490038	NM_001869	ENSG00000158516	CPA2	-	carboxypeptidase A2	protein-coding
4420	chr5	7802243	7802639	+	0	NA	exon (NM_020546, exon 21 of 25)	exon (NM_020546, exon 21 of 25)	49162	NM_001089584	134121	Hs.709979	NM_001089584	ENSG00000215217	C5orf49	-	chromosome 5 open reading frame 49	protein-coding
4111	chr4	24461223	24461599	+	0	NA	intron (NM_001330752, intron 1 of 13)	AluJb|SINE|Alu	13041	NM_001330751	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
4903	chr6	83279762	83279900	+	0	NA	Intergenic	Intergenic	205870	NM_001166392	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
1978	chr14	104286218	104286324	+	0	NA	intron (NM_015316, intron 1 of 16)	MIRb|SINE|MIR	27656	NM_015316	23368	Hs.709297	NM_015316	ENSG00000088808	PPP1R13B	ASPP1|p53BP2-like|p85	protein phosphatase 1 regulatory subunit 13B	protein-coding
2364	chr16	75121179	75121373	+	0	NA	intron (NM_032268, intron 1 of 4)	intron (NM_032268, intron 1 of 4)	29394	NM_153486	197257	Hs.380929	NM_153486	ENSG00000166816	LDHD	DLD	lactate dehydrogenase D	protein-coding
1640	chr14	27289620	27289747	+	0	NA	intron (NR_110556, intron 4 of 4)	intron (NR_110556, intron 4 of 4)	1643	NR_110033	101927062		NR_110033	ENSG00000257845	LOC101927062	-	uncharacterized LOC101927062	ncRNA
4118	chr4	25929940	25930648	+	0	NA	intron (NM_001145432, intron 2 of 2)	intron (NM_001145432, intron 2 of 2)	14480	NM_001145432	389203	Hs.479386	NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7	small integral membrane protein 20	protein-coding
173	chr1	68221597	68221812	+	0	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	70844	NM_001924	1647	Hs.80409	NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
66	chr1	32392539	32393136	+	0	NA	intron (NM_080391, intron 1 of 5)	L1PA15|LINE|L1	-7578	NM_001195101	8073	Hs.470477	NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase type IVA, member 2	protein-coding
2709	chr18	45743649	45743717	+	0	NA	intron (NM_001318841, intron 2 of 4)	intron (NM_001318841, intron 2 of 4)	-80003	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
2026	chr15	53951086	53951268	+	0	NA	intron (NR_102334, intron 14 of 19)	intron (NR_102334, intron 14 of 19)	100682	NM_182758	256764	Hs.122125	NM_182758	ENSG00000166415	WDR72	AI2A3	WD repeat domain 72	protein-coding
5272	chr7	64953785	64953855	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	115108	NM_007139	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
3130	chr2	89877642	89878877	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	766375	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
793	chr11	16321561	16321944	+	0	NA	intron (NM_001145819, intron 3 of 15)	intron (NM_001145819, intron 3 of 15)	102661	NM_001145819	55553	Hs.368226	NM_017508	ENSG00000110693	SOX6	HSSOX6|SOXD	SRY-box 6	protein-coding
1205	chr12	67436602	67436919	+	0	NA	Intergenic	Intergenic	53304	NR_120490	102724421	Hs.135774	NR_120490	ENSG00000257083	LOC102724421	-	uncharacterized LOC102724421	ncRNA
1696	chr14	40460287	40460658	+	0	NA	Intergenic	Intergenic	-558768	NM_203301	254170	Hs.146632	NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
3168	chr2	92281757	92281807	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	152623	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
3674	chr21	36599853	36600122	+	0	NA	Intergenic	MIRb|SINE|MIR	-178392	NM_001754	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
5486	chr7	139905207	139905516	+	0	NA	Intergenic	Intergenic	28300	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	JHDM1D-AS1	-	JHDM1D antisense RNA 1 (head to head)	ncRNA
3469	chr20	10313884	10314044	+	0	NA	Intergenic	Intergenic	98609	NM_018848	8195	Hs.472119	NM_018848	ENSG00000125863	MKKS	BBS6|HMCS|KMS|MKS	McKusick-Kaufman syndrome	protein-coding
3625	chr21	10820107	10820162	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	170809	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
5580	chr8	28949757	28949916	+	0	NA	intron (NM_015254, intron 37 of 39)	intron (NM_015254, intron 37 of 39)	170774	NM_015254	23303	Hs.444767	NM_015254	ENSG00000197892	KIF13B	GAKIN	kinesin family member 13B	protein-coding
59	chr1	30351846	30352144	+	0	NA	Intergenic	Intergenic	158464	NR_110790	101929406	Hs.639413	NR_110790	ENSG00000233399	LINC01648	-	long intergenic non-protein coding RNA 1648	ncRNA
4728	chr6	21847471	21847902	+	0	NA	intron (NR_015410, intron 4 of 11)	intron (NR_015410, intron 4 of 11)	181011	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
4572	chr5	142602066	142602332	+	0	NA	3' UTR (NM_001135608, exon 23 of 23)	3' UTR (NM_001135608, exon 23 of 23)	30134	NR_046816	100874372	Hs.666717	NR_046816	ENSG00000230789	ARHGAP26-IT1	-	ARHGAP26 intronic transcript 1	ncRNA
4546	chr5	127270851	127271070	+	0	NA	intron (NM_001317938, intron 6 of 6)	intron (NM_001317938, intron 6 of 6)	147806	NR_015360	644873	Hs.340623	NR_015360	ENSG00000245937	LINC01184	-	long intergenic non-protein coding RNA 1184	ncRNA
3388	chr2	221175556	221175644	+	0	NA	Intergenic	UCON14|DNA?|DNA?	-404314	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	ncRNA
2091	chr15	72491260	72491726	+	0	NA	3' UTR (NM_001206796, exon 12 of 12)	3' UTR (NM_001206796, exon 12 of 12)	-1357	NM_001012642	196996	Hs.596332	NM_001012642	ENSG00000175318	GRAMD2	-	GRAM domain containing 2	protein-coding
3329	chr2	183533689	183533874	+	0	NA	Intergenic	Intergenic	-46987	NR_073365	54431	Hs.516632	NM_018981	ENSG00000077232	DNAJC10	ERdj5|JPDI|MTHr|PDIA19	DnaJ heat shock protein family (Hsp40) member C10	protein-coding
5951	chr9	72653566	72653576	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	-4926	NM_001347990	256691	Hs.547172	NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding
4161	chr4	49138449	49138991	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	150061	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
1971	chr14	100288324	100288509	+	0	NA	intron (NM_001008707, intron 1 of 22)	intron (NM_001008707, intron 1 of 22)	28671	NM_001008707	2009	Hs.12451	NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAPL|HuEMAP	echinoderm microtubule associated protein like 1	protein-coding
6103	chr9_gl000199_random	131597	132176	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
5939	chr9	71423367	71423591	+	0	NA	intron (NM_003558, intron 2 of 15)	intron (NM_003558, intron 2 of 15)	28557	NM_138333	116224	Hs.655572	NM_138333	ENSG00000187866	FAM122A	C9orf42	family with sequence similarity 122A	protein-coding
5316	chr7	69897565	69897670	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	-699906	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
2358	chr16	73251468	73251641	+	0	NA	Intergenic	Intergenic	-73208	NM_207385	388289	Hs.371893	NM_207385		C16orf47	-	chromosome 16 open reading frame 47	protein-coding
1226	chr12	79395261	79395324	+	0	NA	intron (NM_001291901, intron 2 of 9)	intron (NM_001291901, intron 2 of 9)	-44141	NM_001135806	6857	Hs.310545	NM_005639	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin 1	protein-coding
1949	chr14	96337782	96337883	+	0	NA	Intergenic	Intergenic	-4897	NR_132399	100507043	Hs.455955	NR_038861	ENSG00000250366	TUNAR	HI-LNC78|LINC00617|TUNA	TCL1 upstream neural differentiation-associated RNA	ncRNA
1256	chr12	97404089	97404537	+	0	NA	Intergenic	Intergenic	103069	NM_001135175	121441	Hs.270084	NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
2498	chr17	56495131	56495344	+	0	NA	promoter-TSS (NM_001305544)	promoter-TSS (NM_001305544)	-294	NM_001305544	54894	Hs.584916	NM_017763	ENSG00000108375	RNF43	RNF124|SSPCS|URCC	ring finger protein 43	protein-coding
2247	chr16	33973348	33973379	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-10860	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
5927	chr9	69711389	69711411	+	0	NA	intron (NR_135597, intron 4 of 4).2	intron (NR_135597, intron 4 of 4).2	46384	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
5739	chr8	101464062	101464238	+	0	NA	Intergenic	Intergenic	69159	NR_039681	100616451		NR_039681	ENSG00000265599	MIR4471	-	microRNA 4471	ncRNA
1853	chr14	77670685	77670822	+	0	NA	intron (NM_020431, intron 1 of 23)	MIR3|SINE|MIR	22651	NM_020431	57156	Hs.22452	NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|hsCSC1	transmembrane protein 63C	protein-coding
4958	chr6	97488386	97488484	+	0	NA	intron (NM_001286254, intron 1 of 8)	MER5A|DNA|hAT-Charlie	30483	NM_001323261	114792	Hs.45056	NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch like family member 32	protein-coding
1016	chr11	115280392	115280560	+	0	NA	intron (NM_001098517, intron 1 of 8)	intron (NM_001098517, intron 1 of 8)	13002	NR_135102	105369507	Hs.664155	NR_135102	ENSG00000256315	LOC105369507	-	uncharacterized LOC105369507	ncRNA
219	chr1	90276557	90276750	+	0	NA	Intergenic	Intergenic	-9920	NM_001134479	55144	Hs.482087	NM_018103	ENSG00000171492	LRRC8D	LRRC5	leucine rich repeat containing 8 family member D	protein-coding
2300	chr16	51827202	51827378	+	0	NA	Intergenic	Intergenic	30860	NR_110916	101927364	Hs.133120	NR_110916	ENSG00000260057	LINC01571	-	long intergenic non-protein coding RNA 1571	ncRNA
2480	chr17	46271869	46272070	+	0	NA	intron (NM_001075099, intron 4 of 12)	intron (NM_001075099, intron 4 of 12)	-38096	NR_031607	100302211		NR_031607	ENSG00000221739	MIR1203	MIRN1203|hsa-mir-1203	microRNA 1203	ncRNA
799	chr11	17435195	17435309	+	0	NA	intron (NM_001287174, intron 19 of 38)	intron (NM_001287174, intron 19 of 38)	-24374	NM_001166290	3767	Hs.248141	NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3	potassium voltage-gated channel subfamily J member 11	protein-coding
3734	chr22	16850658	16850966	+	0	NA	Intergenic	HSATII|Satellite|Satellite	222888	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
925	chr11	62609288	62609384	+	0	NA	Intergenic	Intergenic	-1708	NM_018093	54663	Hs.654620	NM_018093	ENSG00000133316	WDR74	-	WD repeat domain 74	protein-coding
5657	chr8	71944642	71944778	+	0	NA	Intergenic	Intergenic	324036	NM_172059	2138	Hs.444971	NM_000503	ENSG00000104313	EYA1	BOP|BOR|BOS1|OFC1	EYA transcriptional coactivator and phosphatase 1	protein-coding
390	chr1	202025415	202026130	+	0	NA	Intergenic	AluSx|SINE|Alu	46082	NM_001114309	1999	Hs.603657	NM_004433	ENSG00000163435	ELF3	EPR-1|ERT|ESE-1|ESX	E74 like ETS transcription factor 3	protein-coding
5319	chr7	69897836	69898145	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	-699533	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
1515	chr13	93372473	93372719	+	0	NA	promoter-TSS (NR_049776)	promoter-TSS (NR_049776)	-369	NR_049775	100873969	Hs.577863	NR_046520	ENSG00000235984	GPC5-AS1	-	GPC5 antisense RNA 1	ncRNA
2368	chr16	77485018	77485173	+	0	NA	Intergenic	Intergenic	-16084	NM_199355	170692	Hs.188746	NM_139054	ENSG00000140873	ADAMTS18	ADAMTS21|KNO2|MMCAT	ADAM metallopeptidase with thrombospondin type 1 motif 18	protein-coding
3357	chr2	210291427	210291633	+	0	NA	intron (NM_001039538, intron 1 of 14)	intron (NM_001039538, intron 1 of 14)	2759	NM_001039538	4133	Hs.368281	NM_002374	ENSG00000078018	MAP2	MAP2A|MAP2B|MAP2C	microtubule associated protein 2	protein-coding
1955	chr14	97354822	97355014	+	0	NA	Intergenic	Intergenic	-54998	NR_104113	145249		NR_104113	ENSG00000225163	LINC00618	C14orf63	long intergenic non-protein coding RNA 618	ncRNA
5866	chr9	9683722	9683949	+	0	NA	intron (NM_002839, intron 7 of 45)	intron (NM_002839, intron 7 of 45)	-115557	NR_135135	105375972	Hs.738242	NR_135135	ENSG00000230920	LOC105375972	-	uncharacterized LOC105375972	ncRNA
945	chr11	72084151	72084551	+	0	NA	intron (NM_030813, intron 4 of 16)	intron (NM_030813, intron 4 of 16)	61377	NM_001258393	81570	Hs.523877	NM_030813	ENSG00000162129	CLPB	ANKCLB|HSP78|MEGCANN|MGCA7|SKD3	ClpB homolog, mitochondrial AAA ATPase chaperonin	protein-coding
2784	chr18	65900064	65900084	+	0	NA	Intergenic	ERVL-int|LTR|ERVL	482279	NM_019022	54495	Hs.440534	NM_019022	ENSG00000166479	TMX3	PDIA13|TXNDC10	thioredoxin related transmembrane protein 3	protein-coding
5543	chr8	8953345	8953932	+	0	NA	Intergenic	Intergenic	47683	NR_039804	100616350		NR_039804	ENSG00000263407	MIR4660	-	microRNA 4660	ncRNA
5153	chr7	26449971	26450178	+	0	NA	intron (NR_015364, intron 1 of 4)	intron (NR_015364, intron 1 of 4)	6966	NR_015364	441204	Hs.587432	NR_015364		LOC441204	-	uncharacterized LOC441204	ncRNA
206	chr1	87221545	87222031	+	0	NA	Intergenic	Intergenic	51535	NM_001206653	51100	Hs.136309	NM_016009	ENSG00000097033	SH3GLB1	Bif-1|CGI-61|PPP1R70|dJ612B15.2	SH3 domain containing GRB2 like endophilin B1	protein-coding
959	chr11	75351177	75351414	+	0	NA	intron (NM_207577, intron 1 of 2)	intron (NM_207577, intron 1 of 2)	28184	NM_207577	4135	Hs.585540	NM_033063	ENSG00000171533	MAP6	MAP6-N|MTAP6|N-STOP|STOP	microtubule associated protein 6	protein-coding
3791	chr22	36232449	36232540	+	0	NA	intron (NM_001082578, intron 2 of 13)	intron (NM_001082578, intron 2 of 13)	4136	NM_001082577	23543	Hs.282998	NM_014309	ENSG00000100320	RBFOX2	FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh	RNA binding protein, fox-1 homolog 2	protein-coding
3194	chr2	99486830	99486856	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	65841	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211 like	protein-coding
5516	chr7	149630917	149631516	+	0	NA	Intergenic	Intergenic	-60265	NR_027040	401431	Hs.556998	NM_001008745	ENSG00000204934	ATP6V0E2-AS1	-	ATP6V0E2 antisense RNA 1	ncRNA
4917	chr6	90202215	90202574	+	0	NA	intron (NM_014942, intron 1 of 15)	intron (NM_014942, intron 1 of 15)	59497	NM_001242809	22881	Hs.702213	NM_014942	ENSG00000135299	ANKRD6	-	ankyrin repeat domain 6	protein-coding
331	chr1	163025217	163025347	+	0	NA	Intergenic	Intergenic	-13114	NM_001102445	5999	Hs.386726	NM_005613	ENSG00000117152	RGS4	RGP4|SCZD9	regulator of G-protein signaling 4	protein-coding
358	chr1	180555111	180555747	+	0	NA	Intergenic	Intergenic	27319	NR_125716	148756		NR_125716	ENSG00000236719	OVAAL	LINC01131|OVAL	ovarian adenocarcinoma amplified long non-coding RNA	ncRNA
2746	chr18	55464178	55464751	+	0	NA	intron (NM_005603, intron 1 of 27)	intron (NM_005603, intron 1 of 27)	5863	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
3606	chr21	10764879	10764970	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	226019	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
737	chr10	112554445	112554622	+	0	NA	intron (NM_001134363, intron 5 of 13)	intron (NM_001134363, intron 5 of 13)	76129	NR_026932	282997	Hs.599931	NR_026932		PDCD4-AS1	-	PDCD4 antisense RNA 1	ncRNA
5284	chr7	66879040	66879461	+	0	NA	Intergenic	Intergenic	78287	NR_108104	101929736	Hs.634050	NR_108104	ENSG00000235475	LINC01372	-	long intergenic non-protein coding RNA 1372	ncRNA
4338	chr4	151086292	151086531	+	0	NA	intron (NM_001040260, intron 2 of 15)	intron (NM_001040260, intron 2 of 15)	86985	NR_036614	166614	Hs.591683	NM_152619	ENSG00000170390	DCLK2	CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2	doublecortin like kinase 2	protein-coding
5645	chr8	62658330	62658632	+	0	NA	Intergenic	MSTD|LTR|ERVL-MaLR	31134	NR_039680	100616484		NR_039680	ENSG00000264408	MIR4470	mir-4470	microRNA 4470	ncRNA
2228	chr16	33887612	33887833	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	74781	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
3037	chr2	58105480	58105547	+	0	NA	Intergenic	Intergenic	-29273	NM_001288837	7444	Hs.715298	NM_006296	ENSG00000028116	VRK2	-	vaccinia related kinase 2	protein-coding
2070	chr15	69760708	69760799	+	0	NA	Intergenic	Intergenic	15594	NM_001003	6176	Hs.356502	NM_001003	ENSG00000137818	RPLP1	LP1|P1|RPP1	ribosomal protein lateral stalk subunit P1	protein-coding
5099	chr6	170139127	170139193	+	0	NA	Intergenic	Intergenic	12519	NR_138070	6991	Hs.733746	NM_174910	ENSG00000184786	TCTE3	TCTEX1D3	t-complex-associated-testis-expressed 3	protein-coding
5366	chr7	106209134	106209313	+	0	NA	Intergenic	Intergenic	92411	NM_175884	168455	Hs.29692	NM_175884	ENSG00000253276	CCDC71L	C7orf74	coiled-coil domain containing 71-like	protein-coding
4112	chr4	24461600	24461878	+	0	NA	intron (NM_001330752, intron 1 of 13)	Kanga2_a|DNA|TcMar-Tc2	12713	NM_001330751	10891	Hs.527078	NM_013261	ENSG00000109819	PPARGC1A	LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1	PPARG coactivator 1 alpha	protein-coding
6131	chrUn_gl000216	6604	7556	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
3830	chr3	16524215	16524598	+	0	NA	intron (NM_015150, intron 2 of 9)	intron (NM_015150, intron 2 of 9)	30816	NM_015150	23180	Hs.98910	NM_015150	ENSG00000131378	RFTN1	MIG2|PIB10|PIG9|RAFTLIN	raftlin, lipid raft linker 1	protein-coding
4336	chr4	141285090	141285273	+	0	NA	intron (NM_001153585, intron 1 of 3)	Tigger2|DNA|TcMar-Tigger	9365	NR_033939	100129858	Hs.660477	NR_033939	ENSG00000196951	SCOC-AS1	-	SCOC antisense RNA 1	ncRNA
220	chr1	95818321	95818597	+	0	NA	Intergenic	L2a|LINE|L2	-34640	NR_135588	100996630	Hs.662270	NR_135588	ENSG00000228504	LINC01760	-	long intergenic non-protein coding RNA 1760	ncRNA
1312	chr12	105804259	105804412	+	0	NA	Intergenic	MIRc|SINE|MIR	79921	NM_001145199	387882	Hs.368938	NM_207376	ENSG00000235162	C12orf75	AGD3|OCC-1|OCC1	chromosome 12 open reading frame 75	protein-coding
6065	chr9	129183286	129183616	+	0	NA	intron (NM_033446, intron 6 of 9)	intron (NM_033446, intron 6 of 9)	-10668	NR_045006	641373	Hs.742606	NR_045006		NRON	NCRNA00194	non-protein coding RNA, repressor of NFAT	ncRNA
5293	chr7	68814665	68814754	+	0	NA	Intergenic	Intergenic	247772	NR_108105	100507468	Hs.362492	NR_108105		LOC100507468	-	uncharacterized LOC100507468	ncRNA
5386	chr7	107992509	107992852	+	0	NA	intron (NM_005010, intron 2 of 27)	LFSINE_Vert|SINE|SINE	104161	NM_001193584	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
4473	chr5	62958949	62959056	+	0	NA	Intergenic	Intergenic	299117	NM_000524	3350	Hs.247940	NM_000524	ENSG00000178394	HTR1A	5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD	5-hydroxytryptamine receptor 1A	protein-coding
2365	chr16	75121374	75121567	+	0	NA	intron (NM_032268, intron 1 of 4)	intron (NM_032268, intron 1 of 4)	29200	NM_153486	197257	Hs.380929	NM_153486	ENSG00000166816	LDHD	DLD	lactate dehydrogenase D	protein-coding
1263	chr12	97623069	97623226	+	0	NA	Intergenic	L2b|LINE|L2	-235652	NR_024037	196475	Hs.652568	NR_024037	ENSG00000255794	RMST	LINC00054|NCRMS|NCRNA00054	rhabdomyosarcoma 2 associated transcript (non-protein coding)	ncRNA
4612	chr5	158498175	158498315	+	0	NA	intron (NM_182708, intron 5 of 14)	intron (NM_182708, intron 5 of 14)	28525	NM_001324101	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
4170	chr4	49145402	49145916	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	157000	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3811	chr22	47080574	47080713	+	0	NA	3' UTR (NM_022766, exon 13 of 13)	3' UTR (NM_022766, exon 13 of 13)	53509	NM_022766	64781	Hs.200668	NM_022766	ENSG00000100422	CERK	LK4|dA59H18.2|dA59H18.3|hCERK	ceramide kinase	protein-coding
4017	chr3	176448196	176448541	+	0	NA	Intergenic	Intergenic	86421	NR_110819	101928684	Hs.639352	NR_110819	ENSG00000228308	LINC01209	-	long intergenic non-protein coding RNA 1209	ncRNA
6149	chrUn_gl000216	15264	15300	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
572	chr10	38872207	38872406	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-117421	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
3762	chr22	20689344	20689350	+	0	NA	intron (NR_136572, intron 3 of 5)	HSATI|Satellite|Satellite	-32519	NR_136569	729461	Hs.629498	NM_201401	ENSG00000274044	LINC01660	-	long intergenic non-protein coding RNA 1660	ncRNA
5415	chr7	125156466	125156599	+	0	NA	Intergenic	Intergenic	-252187	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
3984	chr3	156343858	156343920	+	0	NA	Intergenic	HERVL18-int|LTR|ERVL	-48316	NM_015508	25976	Hs.744050	NM_015508	ENSG00000163659	TIPARP	ARTD14|PARP7|pART14	TCDD inducible poly(ADP-ribose) polymerase	protein-coding
4159	chr4	49137353	49137566	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	148800	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
6483	chrY	28786625	28786631	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	911991	NR_002176	474148	Hs.511777	NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis-specific transcript, Y-linked 3B (non-protein coding)	ncRNA
5269	chr7	64500191	64500266	+	0	NA	intron (NR_033416, intron 1 of 10)	intron (NR_033416, intron 1 of 10)	1496	NR_033416	643180	Hs.510847	NR_033416	ENSG00000234585	CCT6P3	CCT6-3P	chaperonin containing TCP1 subunit 6 pseudogene 3	pseudo
5253	chr7	61792075	61792195	+	0	NA	Intergenic	HSATII|Satellite|Satellite	972299	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
5667	chr8	81064052	81064117	+	0	NA	intron (NR_105035, intron 1 of 6)	LTR54B|LTR|ERV1	19351	NR_105037	7163	Hs.368433	NM_005079	ENSG00000076554	TPD52	D52|N8L|PC-1|PrLZ|hD52	tumor protein D52	protein-coding
1448	chr13	32602736	32603026	+	0	NA	intron (NR_103839, intron 1 of 3)	intron (NR_103839, intron 1 of 3)	-2556	NM_023037	10129	Hs.507669	NM_023037	ENSG00000073910	FRY	13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1	FRY microtubule binding protein	protein-coding
2549	chr17_gl000205_random	87237	87947	+	0	NA	Intergenic	Intergenic	-29031	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo
3795	chr22	37431558	37431793	+	0	NA	Intergenic	Intergenic	-15451	NM_001270483	7263	Hs.474783	NM_003312	ENSG00000128311	TST	RDS	thiosulfate sulfurtransferase	protein-coding
5947	chr9	72612159	72612445	+	0	NA	Intergenic	Intergenic	-46195	NM_001347990	256691	Hs.547172	NM_153267	ENSG00000165072	MAMDC2	-	MAM domain containing 2	protein-coding
3146	chr2	90373188	90373536	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1261478	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
4913	chr6	90082432	90082605	+	0	NA	intron (NM_021244, intron 5 of 6)	intron (NM_021244, intron 5 of 6)	-19899	NM_016021	51465	Hs.163776	NM_016021	ENSG00000198833	UBE2J1	CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p	ubiquitin conjugating enzyme E2 J1	protein-coding
5484	chr7	139904981	139905069	+	0	NA	Intergenic	Intergenic	27964	NR_024451	100134229	Hs.634333	NR_024451	ENSG00000260231	JHDM1D-AS1	-	JHDM1D antisense RNA 1 (head to head)	ncRNA
1573	chr13	102693255	102693466	+	0	NA	intron (NM_001321945, intron 2 of 5)	intron (NM_001321945, intron 2 of 5)	4994	NR_039854	100616239		NR_039854	ENSG00000264482	MIR4705	-	microRNA 4705	ncRNA
1472	chr13	43842681	43842821	+	0	NA	intron (NM_017993, intron 13 of 16)	intron (NM_017993, intron 13 of 16)	155450	NR_047013	100874159	Hs.633241	NR_047013		LINC00400	-	long intergenic non-protein coding RNA 400	ncRNA
3684	chr21	37051839	37052046	+	0	NA	Intergenic	L3|LINE|CR1	-41071	NR_030414	768219		NR_030414	ENSG00000211590	MIR802	MIRN802|hsa-mir-802	microRNA 802	ncRNA
2020	chr15	48061246	48061413	+	0	NA	intron (NM_153618, intron 18 of 18)	intron (NM_153618, intron 18 of 18)	50643	NM_153618	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding
4485	chr5	72578472	72578658	+	0	NA	Intergenic	Intergenic	-80777	NR_134291	340090	Hs.434311	NR_134291		LOC340090	-	uncharacterized LOC340090	ncRNA
3524	chr20	29811874	29811915	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-33573	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
3770	chr22	24903192	24903351	+	0	NA	intron (NM_016327, intron 3 of 9)	intron (NM_016327, intron 3 of 9)	12020	NM_016327	51733	Hs.731656	NM_016327	ENSG00000100024	UPB1	BUP1	beta-ureidopropionase 1	protein-coding
2622	chr18	31382783	31382966	+	0	NA	Intergenic	Intergenic	224333	NM_030632	80816	Hs.464876	NM_030632	ENSG00000141431	ASXL3	BRPS|KIAA1713	additional sex combs like 3, transcriptional regulator	protein-coding
2799	chr18	75898905	75899020	+	0	NA	Intergenic	Intergenic	-193279	NR_104127	101927715	Hs.385670	NR_104127		LINC01029	-	long intergenic non-protein coding RNA 1029	ncRNA
3725	chr21	43944346	43944830	+	0	NA	intron (NM_018964, intron 3 of 20)	intron (NM_018964, intron 3 of 20)	10625	NM_001320537	54020	Hs.547009	NM_018964	ENSG00000160190	SLC37A1	G3PP	solute carrier family 37 member 1	protein-coding
1772	chr14	63742492	63742611	+	0	NA	intron (NM_020663, intron 2 of 4)	intron (NM_020663, intron 2 of 4)	43042	NM_145171	122876	Hs.375028	NM_145171	ENSG00000179600	GPHB5	B5|GPB5|ZLUT1	glycoprotein hormone beta 5	protein-coding
418	chr1	206723739	206724075	+	0	NA	intron (NM_182664, intron 2 of 4)	intron (NM_182664, intron 2 of 4)	-6585	NM_182665	83593	Hs.497579	NM_031437	ENSG00000266094	RASSF5	Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3	Ras association domain family member 5	protein-coding
4466	chr5	51432789	51433116	+	0	NA	Intergenic	Intergenic	-650822	NM_015946	53918	Hs.644352	NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota homolog (Drosophila)	protein-coding
2324	chr16	53125820	53125978	+	0	NA	intron (NM_025134, intron 1 of 38)	intron (NM_025134, intron 1 of 38)	36954	NM_025134	80205	Hs.59159	NM_015287	ENSG00000177200	CHD9	AD013|CHD-9|CReMM|KISH2|PRIC320	chromodomain helicase DNA binding protein 9	protein-coding
4174	chr4	49148986	49150366	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	161017	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
933	chr11	71072732	71073218	+	0	NA	Intergenic	(TGAG)n|Simple_repeat|Simple_repeat	61425	NR_038862	399923	Hs.128191	NM_001001680	ENSG00000172900	FLJ42102	-	uncharacterized LOC399923	ncRNA
5601	chr8	43093609	43093970	+	0	NA	Intergenic	SAR|Satellite|Satellite	-53796	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
2217	chr16	33866050	33866232	+	0	NA	Intergenic	(GAATG)n|Simple_repeat|Simple_repeat	96362	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
348	chr1	169154349	169154541	+	0	NA	intron (NM_197972, intron 10 of 11)	intron (NM_197972, intron 10 of 11)	78498	NM_001677	481	Hs.291196	NM_001677	ENSG00000143153	ATP1B1	ATP1B	ATPase Na+/K+ transporting subunit beta 1	protein-coding
2333	chr16	54540676	54540783	+	0	NA	Intergenic	Intergenic	-136118	NR_134923	100996345	Hs.112680	NR_134922	ENSG00000261803	LINC02140	-	long intergenic non-protein coding RNA 2140	ncRNA
6386	chrY	13684894	13684908	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	848488	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
6020	chr9	100864066	100864279	+	0	NA	intron (NM_014788, intron 2 of 5)	AluSx1|SINE|Alu	17463	NM_033219	9830	Hs.575631	NM_014788	ENSG00000106785	TRIM14	-	tripartite motif containing 14	protein-coding
6190	chrUn_gl000216	79460	79510	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
4785	chr6	37315242	37315492	+	0	NA	Intergenic	Intergenic	-6381	NR_046399	9025	Hs.485278	NM_003958	ENSG00000112130	RNF8	hRNF8	ring finger protein 8	protein-coding
2052	chr15	60847316	60847485	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	37307	NM_134262	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
4496	chr5	78204131	78204517	+	0	NA	intron (NM_198709, intron 5 of 7)	intron (NM_198709, intron 5 of 7)	77442	NM_198709	411	Hs.149103	NM_000046	ENSG00000113273	ARSB	ASB|G4S|MPS6	arylsulfatase B	protein-coding
1090	chr12	3808187	3808344	+	0	NA	intron (NM_032680, intron 3 of 10)	MIRb|SINE|MIR	54101	NM_001144958	84766	Hs.504534	NM_032680	ENSG00000130038	CRACR2A	EFCAB4B	calcium release activated channel regulator 2A	protein-coding
627	chr10	42397786	42399755	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	464723	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
993	chr11	112209939	112210123	+	0	NA	intron (NR_126004, intron 2 of 3)	intron (NR_126004, intron 2 of 3)	68559	NR_126004	283140	Hs.651827	NR_126004	ENSG00000250303	LOC283140	-	uncharacterized LOC283140	ncRNA
2868	chr19	51549994	51550235	+	0	NA	Intergenic	Intergenic	-11966	NM_145895	43849	Hs.411572	NM_019598	ENSG00000186474	KLK12	KLK-L5|KLKL5	kallikrein related peptidase 12	protein-coding
1308	chr12	105171372	105171614	+	0	NA	Intergenic	Intergenic	150979	NM_032148	84102	Hs.577463	NM_032148	ENSG00000136052	SLC41A2	SLC41A1-L1	solute carrier family 41 member 2	protein-coding
6204	chrUn_gl000216	154585	154937	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
5357	chr7	95423311	95423851	+	0	NA	intron (NM_001278422, intron 1 of 15)	intron (NM_001278422, intron 1 of 15)	21763	NM_001135556	1780	Hs.440364	NM_004411	ENSG00000158560	DYNC1I1	DNCI1|DNCIC1	dynein cytoplasmic 1 intermediate chain 1	protein-coding
2503	chr17	57591383	57591588	+	0	NA	intron (NR_110813, intron 1 of 2)	intron (NR_110813, intron 1 of 2)	12733	NR_110813	101927728	Hs.569720	NR_110813	ENSG00000265313	LINC01476	-	long intergenic non-protein coding RNA 1476	ncRNA
4100	chr4	16125450	16125575	+	0	NA	Intergenic	Intergenic	-39889	NM_001145848	8842	Hs.614734	NM_006017	ENSG00000007062	PROM1	AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4	prominin 1	protein-coding
4458	chr5	49439878	49440549	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	297021	NM_198449	133418	Hs.561411	NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
388	chr1	187846770	187846784	+	0	NA	Intergenic	Intergenic	434017	NR_132374	106144535	Hs.568709	NR_132374	ENSG00000231599	LINC01037	-	long intergenic non-protein coding RNA 1037	ncRNA
5792	chr8	125685648	125685871	+	0	NA	intron (NM_014751, intron 3 of 13)	intron (NM_014751, intron 3 of 13)	54989	NM_001282971	9788	Hs.336994	NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS1, I-BAR domain containing	protein-coding
1425	chr13	22237445	22237671	+	0	NA	Intergenic	MSTB2|LTR|ERVL-MaLR	-7657	NM_002010	2254	Hs.111	NM_002010	ENSG00000102678	FGF9	FGF-9|GAF|HBFG-9|HBGF-9|SYNS3	fibroblast growth factor 9	protein-coding
5350	chr7	91264079	91264388	+	0	NA	Intergenic	Intergenic	245801	NM_001301135	7978	Hs.532216	NM_006980	ENSG00000127989	MTERF1	MTERF	mitochondrial transcription termination factor 1	protein-coding
5888	chr9	37324653	37325103	+	0	NA	intron (NM_001289121, intron 5 of 8)	intron (NM_001289121, intron 5 of 8)	-97829	NM_012203	9380	Hs.155742	NM_012203	ENSG00000137106	GRHPR	GLXR|GLYD|PH2	glyoxylate and hydroxypyruvate reductase	protein-coding
5053	chr6	141873951	141873965	+	0	NA	Intergenic	L1MEc|LINE|L1	535978	NM_002511	4829	Hs.552106	NM_002511	ENSG00000135577	NMBR	BB1|BB1R|NMB-R	neuromedin B receptor	protein-coding
4826	chr6	52362861	52363154	+	0	NA	3' UTR (NM_012288, exon 11 of 11)	3' UTR (NM_012288, exon 11 of 11)	77202	NM_001172420	114327	Hs.403171	NM_018100	ENSG00000096093	EFHC1	EJM1|dJ304B14.2	EF-hand domain containing 1	protein-coding
4190	chr4	49635138	49635171	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	646495	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3083	chr2	80295116	80295360	+	0	NA	intron (NM_001282597, intron 7 of 18)	intron (NM_001282597, intron 7 of 18)	-201529	NR_107047	102465877		NR_107047	ENSG00000276917	MIR8080	hsa-mir-8080	microRNA 8080	ncRNA
1842	chr14	76952486	76952493	+	0	NA	intron (NM_004452, intron 7 of 10)	intron (NM_004452, intron 7 of 10)	114799	NM_004452	2103	Hs.435845	NM_004452	ENSG00000119715	ESRRB	DFNB35|ERR2|ERRb|ESRL2|NR3B2	estrogen related receptor beta	protein-coding
6197	chrUn_gl000216	144980	145021	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
485	chr1	224392704	224392797	+	0	NA	Intergenic	Intergenic	8231	NR_110669	101927143	Hs.638720	NR_110669	ENSG00000232628	LOC101927143	-	uncharacterized LOC101927143	ncRNA
2143	chr15	101667689	101667793	+	0	NA	Intergenic	Intergenic	124396	NM_014918	22856	Hs.110488	NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
3316	chr2	175875307	175875651	+	0	NA	Intergenic	Intergenic	-5372	NR_038133	1123	Hs.380138	NM_001822	ENSG00000128656	CHN1	ARHGAP2|CHN|DURS2|NC|RHOGAP2	chimerin 1	protein-coding
1270	chr12	99962716	99962812	+	0	NA	intron (NM_152788, intron 9 of 25)	intron (NM_152788, intron 9 of 25)	-78764	NM_153364	196472	Hs.591011	NM_153364	ENSG00000180219	FAM71C	-	family with sequence similarity 71 member C	protein-coding
3881	chr3	99630338	99630684	+	0	NA	intron (NR_031662, intron 1 of 4)	L2c|LINE|L2	-35464	NM_001282793	11259	Hs.104672	NM_014890	ENSG00000168386	FILIP1L	DOC-1|DOC1|GIP130|GIP90	filamin A interacting protein 1 like	protein-coding
5318	chr7	69897687	69897835	+	0	NA	intron (NM_015570, intron 4 of 18)	intron (NM_015570, intron 4 of 18)	-699762	NM_022479	64409	Hs.488591	NM_022479	ENSG00000185274	WBSCR17	GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L	Williams-Beuren syndrome chromosome region 17	protein-coding
1645	chr14	27405256	27405571	+	0	NA	Intergenic	Intergenic	27565	NR_036193	100423019		NR_036193	ENSG00000265165	MIR4307	-	microRNA 4307	ncRNA
1389	chr12	123616309	123616466	+	0	NA	Intergenic	Intergenic	-21351	NM_001300801	57605	Hs.272759	NM_020845	ENSG00000090975	PITPNM2	NIR-3|NIR3|RDGB2|RDGBA2	phosphatidylinositol transfer protein membrane associated 2	protein-coding
324	chr1	150135688	150135831	+	0	NA	intron (NR_135098, intron 1 of 3)	intron (NR_135098, intron 1 of 3)	2833	NR_135098	105371433	Hs.599366	NR_135098		LOC105371433	-	uncharacterized LOC105371433	ncRNA
3508	chr20	22444545	22444693	+	0	NA	Intergenic	Intergenic	-43338	NR_027089	284788	Hs.651993	NR_027089	ENSG00000204684	LOC284788	-	uncharacterized LOC284788	ncRNA
5987	chr9	92807303	92807648	+	0	NA	Intergenic	Intergenic	-3694	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
5566	chr8	24392622	24392914	+	0	NA	intron (NR_125808, intron 1 of 5)	intron (NR_125808, intron 1 of 5)	13363	NR_125808	101929294	Hs.637673	NR_125808		LOC101929294	-	uncharacterized LOC101929294	ncRNA
637	chr10	42596639	42596682	+	0	NA	Intergenic	Intergenic	266833	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
2066	chr15	66124916	66125083	+	0	NA	Intergenic	Intergenic	-36798	NM_001206836	8766	Hs.321541	NM_004663	ENSG00000103769	RAB11A	YL8	RAB11A, member RAS oncogene family	protein-coding
4223	chr4	56624661	56624919	+	0	NA	Intergenic	Intergenic	-61447	NR_003935	644145	Hs.570825	NR_003935		LOC644145	-	exocyst complex component 1 pseudogene	pseudo
5147	chr7	25817278	25817490	+	0	NA	Intergenic	Intergenic	172222	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
5031	chr6	128428705	128428785	+	0	NA	intron (NM_001135648, intron 7 of 30)	intron (NM_001135648, intron 7 of 30)	79735	NR_125849	101928140	Hs.656779	NR_125849		LOC101928140	-	uncharacterized LOC101928140	ncRNA
752	chr11	8311451	8311507	+	0	NA	Intergenic	Intergenic	-21297	NM_001270428	4004	Hs.654426	NM_002315	ENSG00000166407	LMO1	RBTN1|RHOM1|TTG1	LIM domain only 1	protein-coding
2679	chr18	40255303	40255615	+	0	NA	intron (NR_046174, intron 7 of 9)	intron (NR_046174, intron 7 of 9)	440198	NM_001272077	6014	Hs.464985	NM_002930	ENSG00000152214	RIT2	RIBA|RIN|ROC2	Ras like without CAAX 2	protein-coding
1232	chr12	89619646	89619867	+	0	NA	Intergenic	Intergenic	126880	NM_001946	1848	Hs.298654	NM_001946	ENSG00000139318	DUSP6	HH19|MKP3|PYST1	dual specificity phosphatase 6	protein-coding
2899	chr2	4124932	4125015	+	0	NA	Intergenic	Intergenic	103222	NR_136322	105373394	Hs.742693	NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
2941	chr2	9419290	9419480	+	0	NA	intron (NM_001135191, intron 1 of 26)	intron (NM_001135191, intron 1 of 26)	72491	NM_003887	8853	Hs.555902	NM_003887	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
3045	chr2	61934988	61935460	+	0	NA	Intergenic	Intergenic	146054	NR_037710	84140	Hs.440466	NM_032180	ENSG00000170264	FAM161A	RP28	family with sequence similarity 161 member A	protein-coding
5978	chr9	92302144	92302347	+	0	NA	intron (NR_024280, intron 3 of 5)	intron (NR_024280, intron 3 of 5)	47547	NR_024280	100129066	Hs.125947	NR_024280	ENSG00000237372	UNQ6494	-	uncharacterized LOC100129066	ncRNA
379	chr1	184823516	184824066	+	0	NA	intron (NM_052966, intron 5 of 13)	intron (NM_052966, intron 5 of 13)	-99750	NR_135118	80267	Hs.523811	NM_025191	ENSG00000116406	EDEM3	C1orf22	ER degradation enhancing alpha-mannosidase like protein 3	protein-coding
1639	chr14	27289293	27289619	+	0	NA	intron (NR_110556, intron 4 of 4)	intron (NR_110556, intron 4 of 4)	1870	NR_110033	101927062		NR_110033	ENSG00000257845	LOC101927062	-	uncharacterized LOC101927062	ncRNA
3404	chr2	224162652	224162824	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	246090	NM_080671	23704	Hs.348522	NM_080671	ENSG00000152049	KCNE4	MIRP3	potassium voltage-gated channel subfamily E regulatory subunit 4	protein-coding
5197	chr7	44229133	44229473	+	0	NA	promoter-TSS (NM_000162)	promoter-TSS (NM_000162)	-281	NM_000162	2645	Hs.1270	NM_000162	ENSG00000106633	GCK	FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2	glucokinase	protein-coding
1035	chr11	122766161	122766266	+	0	NA	intron (NM_024806, intron 2 of 8)	intron (NM_024806, intron 2 of 8)	12977	NM_199124	79864	Hs.164705	NM_024806	ENSG00000109944	C11orf63	-	chromosome 11 open reading frame 63	protein-coding
3872	chr3	93801839	93801840	+	0	NA	intron (NM_022072, intron 2 of 5)	intron (NM_022072, intron 2 of 5)	-19772	NM_001195643	200895	Hs.718516	NM_176815	ENSG00000178700	DHFR2	DHFRL1|DHFRP4	dihydrofolate reductase 2	protein-coding
3367	chr2	211495532	211495589	+	0	NA	intron (NM_001122634, intron 11 of 27)	intron (NM_001122634, intron 11 of 27)	13265	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
5132	chr7	11215678	11215826	+	0	NA	Intergenic	Intergenic	202253	NR_033435	9678	Hs.655688	NM_014660	ENSG00000106443	PHF14	-	PHD finger protein 14	protein-coding
3964	chr3	131775833	131776191	+	0	NA	Intergenic	Intergenic	-17562	NM_153429	131034	Hs.199877	NM_130808	ENSG00000196353	CPNE4	COPN4|CPN4	copine 4	protein-coding
1894	chr14	85340930	85341089	+	0	NA	Intergenic	Intergenic	-512610	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
6260	chrX	17811385	17811523	+	0	NA	Intergenic	MamRep434|DNA|TcMar-Tigger	55885	NM_001037536	6322	Hs.109655	NM_006746	ENSG00000047634	SCML1	-	sex comb on midleg-like 1 (Drosophila)	protein-coding
535	chr10	29265183	29265249	+	0	NA	Intergenic	Intergenic	129879	NM_001278522	283080		NM_001278522		C10orf126	bA492M23.1	chromosome 10 open reading frame 126	protein-coding
3138	chr2	90371727	90372043	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1260001	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
683	chr10	76708215	76708315	+	0	NA	intron (NM_012330, intron 3 of 17)	intron (NM_012330, intron 3 of 17)	35721	NR_134476	101929165	Hs.670533	NR_134476		LOC101929165	-	uncharacterized LOC101929165	ncRNA
2260	chr16	34021949	34021968	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-59455	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
1215	chr12	68743511	68743625	+	0	NA	Intergenic	Intergenic	-17407	NM_020128	56890	Hs.655702	NM_017440	ENSG00000111554	MDM1	-	Mdm1 nuclear protein	protein-coding
5529	chr7_gl000195_random	33333	33514	+	0	NA	Intergenic	LTR7|LTR|ERV1	32617	NM_001322975	102723360	Hs.743984	NM_001322975	ENSG00000277991	LOC102723360	-	uncharacterized LOC102723360	protein-coding
4378	chr4	185653648	185653743	+	0	NA	intron (NM_024629, intron 1 of 12)	MIRc|SINE|MIR	1591	NM_024629	79682	Hs.575032	NM_024629	ENSG00000151725	CENPU	CENP50|CENPU50|KLIP1|MLF1IP|PBIP1	centromere protein U	protein-coding
5729	chr8	98790423	98790544	+	0	NA	intron (NM_018407, intron 1 of 6)	intron (NM_018407, intron 1 of 6)	2674	NM_018407	55353	Hs.492314	NM_018407	ENSG00000104341	LAPTM4B	LAPTM4beta|LC27	lysosomal protein transmembrane 4 beta	protein-coding
2995	chr2	42477033	42477041	+	0	NA	intron (NM_001145076, intron 2 of 21)	intron (NM_001145076, intron 2 of 21)	-79666	NR_110584	102723824	Hs.639826	NR_110584		LOC102723824	-	uncharacterized LOC102723824	ncRNA
3886	chr3	104317669	104318136	+	0	NA	Intergenic	Intergenic	-371797	NR_030330	693127		NR_030330	ENSG00000208032	MIR548A3	MIRN548A3	microRNA 548a-3	ncRNA
1712	chr14	45181563	45182520	+	0	NA	Intergenic	Intergenic	-184466	NM_001017923	122525	Hs.82098	NM_001017923	ENSG00000179476	C14orf28	DRIP-1|DRIP1|c14_5270	chromosome 14 open reading frame 28	protein-coding
6176	chrUn_gl000216	54288	54311	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5624	chr8	59745176	59745227	+	0	NA	intron (NM_014729, intron 5 of 8)	intron (NM_014729, intron 5 of 8)	-172797	NM_003580	8439	Hs.372000	NM_003580	ENSG00000035681	NSMAF	FAN|GRAMD5	neutral sphingomyelinase activation associated factor	protein-coding
2344	chr16	67816617	67816628	+	0	NA	intron (NM_001320238, intron 1 of 12)	AluSx|SINE|Alu	23933	NM_020850	57610	Hs.368569	NM_020850	ENSG00000141084	RANBP10	-	RAN binding protein 10	protein-coding
5937	chr9	70490099	70490581	+	0	NA	promoter-TSS (NM_001286835)	promoter-TSS (NM_001286835)	-129	NM_001286836	220869	Hs.355950	NM_001024916	ENSG00000147996	CBWD5	DC36	COBW domain containing 5	protein-coding
5033	chr6	128428915	128429022	+	0	NA	intron (NM_001135648, intron 7 of 30)	intron (NM_001135648, intron 7 of 30)	79958	NR_125849	101928140	Hs.656779	NR_125849		LOC101928140	-	uncharacterized LOC101928140	ncRNA
765	chr11	12746365	12746557	+	0	NA	intron (NM_021961, intron 2 of 12)	intron (NM_021961, intron 2 of 12)	50492	NM_021961	7003	Hs.655331	NM_021961	ENSG00000187079	TEAD1	AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1	TEA domain transcription factor 1	protein-coding
2552	chr18	107305	107337	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	-1744	NR_033770	727758	Hs.585843	NR_033770	ENSG00000263006	ROCK1P1	-	Rho associated coiled-coil containing protein kinase 1 pseudogene 1	pseudo
5007	chr6	110138607	110138682	+	0	NA	intron (NM_014845, intron 22 of 22)	intron (NM_014845, intron 22 of 22)	-64225	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
312	chr1	149035077	149035144	+	0	NA	intron (NR_104217, intron 2 of 17).2	HSATII|Satellite|Satellite	74615	NR_104217	101929780	Hs.534675	NR_104217	ENSG00000272150	NBPF25P	WI2-925H4.1	neuroblastoma breakpoint family member 25, pseudogene	pseudo
2521	chr17	68657340	68657395	+	0	NA	Intergenic	Intergenic	491691	NM_000891	3759	Hs.1547	NM_000891	ENSG00000123700	KCNJ2	ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3	potassium voltage-gated channel subfamily J member 2	protein-coding
4452	chr5	46391741	46391771	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-695536	NM_021072	348980	Hs.353176	NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
1002	chr11	113188129	113188343	+	0	NA	intron (NM_001318533, intron 2 of 21)	intron (NM_001318533, intron 2 of 21)	2985	NM_017868	54970	Hs.288772	NM_017868	ENSG00000149292	TTC12	TPARM	tetratricopeptide repeat domain 12	protein-coding
2435	chr17	25265516	25265886	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	150566	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
6187	chrUn_gl000216	76244	76252	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
4837	chr6	53792404	53792417	+	0	NA	Intergenic	AluSz|SINE|Alu	-2370	NR_125842	101927189	Hs.453592	NR_125842	ENSG00000236740	LOC101927189	-	uncharacterized LOC101927189	ncRNA
370	chr1	182205635	182205904	+	0	NA	intron (NR_104175, intron 2 of 2)	intron (NR_104175, intron 2 of 2)	77427	NR_104175	400799	Hs.634884	NR_104175	ENSG00000228918	LINC01344	GS1-122H1.2	long intergenic non-protein coding RNA 1344	ncRNA
6391	chrY	13688322	13688351	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	845053	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5456	chr7	130005628	130005841	+	0	NA	intron (NR_133928, intron 1 of 1)	intron (NR_133928, intron 1 of 1)	1234	NR_133928	105375504	Hs.436058	NR_133928		LOC105375504	-	uncharacterized LOC105375504	ncRNA
3398	chr2	221814377	221814515	+	0	NA	Intergenic	Intergenic	622632	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
567	chr10	38818814	38818823	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	101744	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
6120	chrUn_gl000216	845	1101	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
5585	chr8	29658082	29658166	+	0	NA	Intergenic	Intergenic	27896	NR_125817	101929470	Hs.204721	NR_125817	ENSG00000248964	LOC101929470	-	uncharacterized LOC101929470	ncRNA
4925	chr6	90688049	90688246	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	83959	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
6029	chr9	110582094	110582530	+	0	NA	Intergenic	Intergenic	-330311	NM_004235	9314	Hs.376206	NM_004235	ENSG00000136826	KLF4	EZF|GKLF	Kruppel like factor 4	protein-coding
3749	chr22	18878721	18878721	+	0	NA	intron (NR_136571, intron 1 of 11)	HSATI|Satellite|Satellite	3223	NR_136571	100996432	Hs.631668	NR_136571		LINC01663	-	long intergenic non-protein coding RNA 1663	ncRNA
4897	chr6	81348486	81348645	+	0	NA	Intergenic	Intergenic	532238	NM_001318975	594	Hs.654441	NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
3115	chr2	89866987	89867012	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	755115	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
380	chr1	184874527	184874722	+	0	NA	intron (NM_052966, intron 1 of 13)	intron (NM_052966, intron 1 of 13)	69094	NM_052966	116496	Hs.518662	NM_052966	ENSG00000135842	FAM129A	C1orf24|GIG39|NIBAN	family with sequence similarity 129 member A	protein-coding
1279	chr12	101861277	101861654	+	0	NA	Intergenic	AluSx|SINE|Alu	-7734	NM_152323	121599	Hs.577097	NM_152323	ENSG00000166211	SPIC	SPI-C	Spi-C transcription factor	protein-coding
965	chr11	92419894	92420115	+	0	NA	intron (NM_001008781, intron 2 of 24)	intron (NM_001008781, intron 2 of 24)	228790	NR_135091	105369431	Hs.532389	NR_135091		LOC105369431	-	uncharacterized LOC105369431	ncRNA
3206	chr2	106357295	106357407	+	0	NA	Intergenic	Intergenic	-4169	NM_003581	8440	Hs.529244	NM_003581	ENSG00000071051	NCK2	GRB4|NCKbeta	NCK adaptor protein 2	protein-coding
2079	chr15	69977850	69978460	+	0	NA	intron (NR_126437, intron 5 of 5)	MER96|DNA|hAT	93616	NR_126437	104472713	Hs.430824	NR_126437	ENSG00000259641	PCAT29	-	prostate cancer associated transcript 29 (non-protein coding)	ncRNA
2974	chr2	37048468	37048645	+	0	NA	Intergenic	Intergenic	124723	NM_001177969	5212	Hs.137415	NM_053276	ENSG00000205221	VIT	-	vitrin	protein-coding
1395	chr12	125423684	125424049	+	0	NA	Intergenic	MIRb|SINE|MIR	23773	NR_049820	100847004		NR_049820	ENSG00000265345	MIR5188	mir-5188	microRNA 5188	ncRNA
286	chr1	121479079	121479164	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	218211	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
1075	chr11	131181864	131182045	+	0	NA	Intergenic	Intergenic	-58417	NM_001048209	50863	Hs.504352	NM_016522	ENSG00000182667	NTM	HNT|IGLON2|NTRI	neurotrimin	protein-coding
5511	chr7	147755092	147755481	+	0	NA	intron (NM_014141, intron 15 of 23)	intron (NM_014141, intron 15 of 23)	128601	NR_036093	100422849		NR_036093	ENSG00000221296	MIR548T	-	microRNA 548t	ncRNA
800	chr11	17435310	17435503	+	0	NA	intron (NM_001287174, intron 19 of 38)	intron (NM_001287174, intron 19 of 38)	-24528	NM_001166290	3767	Hs.248141	NM_000525	ENSG00000187486	KCNJ11	BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3	potassium voltage-gated channel subfamily J member 11	protein-coding
2426	chr17	25263634	25263671	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	152615	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
3125	chr2	89870333	89871629	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	759097	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
4469	chr5	51787039	51787373	+	0	NA	Intergenic	Intergenic	-296568	NM_015946	53918	Hs.644352	NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota homolog (Drosophila)	protein-coding
1365	chr12	117549931	117550338	+	0	NA	intron (NR_120464, intron 2 of 2)	intron (NR_120464, intron 2 of 2)	12862	NR_120464	101928244	Hs.742266	NR_120464		TESC-AS1	-	TESC antisense RNA 1 (head to head)	ncRNA
6443	chrY	13843914	13844090	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	689387	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
6277	chrX	58561152	58561164	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-624091	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger, X-linked, duplicated A	protein-coding
3613	chr21	10795929	10796063	+	0	NA	Intergenic	Intergenic	194947	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
6258	chrX	11498711	11498978	+	0	NA	intron (NR_109776, intron 1 of 14)	intron (NR_109776, intron 1 of 14)	-52939	NM_001287242	395	Hs.435291	NM_001174	ENSG00000047648	ARHGAP6	RHOGAP6|RHOGAPX-1	Rho GTPase activating protein 6	protein-coding
4563	chr5	136711789	136711906	+	0	NA	intron (NM_004598, intron 2 of 10)	intron (NM_004598, intron 2 of 10)	123171	NM_004598	6695	Hs.596136	NM_004598	ENSG00000152377	SPOCK1	SPOCK|TESTICAN|TIC1	SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1	protein-coding
1779	chr14	66306722	66306875	+	0	NA	Intergenic	Intergenic	368978	NR_030355	693210		NR_030355	ENSG00000207781	MIR625	MIRN625|hsa-mir-625	microRNA 625	ncRNA
1568	chr13	101942483	101942497	+	0	NA	intron (NM_052867, intron 9 of 43)	intron (NM_052867, intron 9 of 43)	126323	NM_052867	259232	Hs.525146	NM_052867	ENSG00000102452	NALCN	CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1	sodium leak channel, non-selective	protein-coding
607	chr10	39109328	39109352	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	119613	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
1807	chr14	69602083	69602382	+	0	NA	intron (NM_001284206, intron 1 of 8)	Charlie1a|DNA|hAT-Charlie	17084	NM_001284207	8816	Hs.509780	NM_003861	ENSG00000139990	DCAF5	BCRG2|BCRP2|D14S1461E|WDR22	DDB1 and CUL4 associated factor 5	protein-coding
2902	chr2	4320204	4320421	+	0	NA	Intergenic	Intergenic	298561	NR_136322	105373394	Hs.742693	NR_136322		LOC105373394	-	uncharacterized LOC105373394	ncRNA
5472	chr7	135708082	135708200	+	0	NA	Intergenic	Intergenic	-45937	NM_001128619	767558	Hs.602015	NM_001128619	ENSG00000267697	LUZP6	MPD6|MTPNUT	leucine zipper protein 6	protein-coding
3093	chr2	89830648	89830669	+	0	NA	Intergenic	HSATII|Satellite|Satellite	718774	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
2508	chr17	59286294	59286509	+	0	NA	intron (NM_001330413, intron 23 of 25)	intron (NM_001330413, intron 23 of 25)	158664	NR_136397	101927855	Hs.662123	NR_136397	ENSG00000267131	LOC101927855	-	uncharacterized LOC101927855	ncRNA
5264	chr7	61975953	61977119	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	787898	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
1073	chr11	129723947	129724133	+	0	NA	intron (NM_138788, intron 2 of 5)	intron (NM_138788, intron 2 of 5)	38364	NM_001331211	120224	Hs.504301	NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
2187	chr16	18246971	18247347	+	0	NA	Intergenic	Intergenic	179360	NM_001282511	101059953	Hs.636569	NM_001282511	ENSG00000214940	NPIPA8	LCR16a9	nuclear pore complex interacting protein family member A8	protein-coding
5040	chr6	135572402	135572538	+	0	NA	Intergenic	Intergenic	12172	NR_030317	693126		NR_030317	ENSG00000207689	MIR548A2	MIRN548A2	microRNA 548a-2	ncRNA
3399	chr2	221814516	221814662	+	0	NA	Intergenic	Intergenic	622489	NM_001304537	2043	Hs.371218	NM_004438	ENSG00000116106	EPHA4	HEK8|SEK|TYRO1	EPH receptor A4	protein-coding
3860	chr3	56951985	56952230	+	0	NA	intron (NM_001128615, intron 3 of 12)	intron (NM_001128615, intron 3 of 12)	-1608	NM_001289698	50650	Hs.476402	NM_019555	ENSG00000163947	ARHGEF3	GEF3|STA3|XPLN	Rho guanine nucleotide exchange factor 3	protein-coding
2844	chr19	31297050	31297108	+	0	NA	Intergenic	Intergenic	433779	NM_014717	9745	Hs.378901	NM_014717	ENSG00000198597	ZNF536	-	zinc finger protein 536	protein-coding
5230	chr7	61080241	61080319	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1684154	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
3575	chr20	47299224	47299536	+	0	NA	intron (NM_020820, intron 10 of 39)	intron (NM_020820, intron 10 of 39)	145040	NM_020820	57580	Hs.153310	NM_020820	ENSG00000124126	PREX1	P-REX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein-coding
816	chr11	20719480	20719993	+	0	NA	intron (NM_201551, intron 2 of 18)	intron (NM_201551, intron 2 of 18)	28639	NM_001288714	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding
5307	chr7	69287975	69288325	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	224245	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
3031	chr2	56701951	56702059	+	0	NA	Intergenic	Intergenic	-289100	NR_125368	100129434	Hs.580330	NR_125368		LOC100129434	-	uncharacterized LOC100129434	ncRNA
5775	chr8	109961461	109961466	+	0	NA	Intergenic	Intergenic	-138190	NM_003301	7201	Hs.3022	NM_003301	ENSG00000174417	TRHR	TRH-R	thyrotropin releasing hormone receptor	protein-coding
4260	chr4	83421280	83421495	+	0	NA	intron (NM_001080506, intron 5 of 7)	intron (NM_001080506, intron 5 of 7)	61739	NM_001080506	441027	Hs.507676	NM_001080506	ENSG00000249242	TMEM150C	TTN3	transmembrane protein 150C	protein-coding
4010	chr3	174905444	174905808	+	0	NA	intron (NM_207015, intron 2 of 13)	L2c|LINE|L2	-72594	NR_046390	100862679	Hs.148810	NR_046390	ENSG00000230292	NAALADL2-AS3	-	NAALADL2 antisense RNA 3	ncRNA
1062	chr11	127931118	127931426	+	0	NA	Intergenic	Intergenic	460933	NM_005238	2113	Hs.369438	NM_005238	ENSG00000134954	ETS1	ETS-1|EWSR2|c-ets-1|p54	ETS proto-oncogene 1, transcription factor	protein-coding
3159	chr2	91597138	91598170	+	0	NA	Intergenic	HSATII|Satellite|Satellite	250321	NR_027238	654342	Hs.469287	NR_027238		LOC654342	-	lymphocyte-specific protein 1 pseudogene	pseudo
6362	chrY	13453035	13453536	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1080104	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3112	chr2	89866555	89866635	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	754711	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
3169	chr2	92284059	92284227	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	154984	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
1700	chr14	40545624	40545699	+	0	NA	Intergenic	Intergenic	-643957	NM_203301	254170	Hs.146632	NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
2609	chr18	25293080	25293334	+	0	NA	Intergenic	Intergenic	323342	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
4240	chr4	74534675	74535077	+	0	NA	Intergenic	HERVK13-int|LTR|ERVK	-48528	NM_001270392	166824	Hs.529677	NM_177532	ENSG00000169435	RASSF6	-	Ras association domain family member 6	protein-coding
6476	chrY	13869793	13869882	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	663552	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
445	chr1	209630337	209630356	+	0	NA	Intergenic	Intergenic	24868	NR_029622	406988		NR_029622	ENSG00000230937	MIR205	MIRN205|mir-205	microRNA 205	ncRNA
3261	chr2	147955629	147955689	+	0	NA	Intergenic	Intergenic	611034	NR_026904	728773	Hs.334462	NR_026904		PABPC1P2	PABP2|PABP4|PABPCP2|PABPCP4	poly(A) binding protein cytoplasmic 1 pseudogene 2	pseudo
2131	chr15	93375066	93375457	+	0	NA	Intergenic	Intergenic	36547	NR_033769	728619	Hs.684129	NR_033769		ASB9P1	-	ankyrin repeat and SOCS box containing 9 pseudogene 1	pseudo
5363	chr7	105711910	105712593	+	0	NA	Intergenic	Intergenic	40540	NM_182715	6856	Hs.80919	NM_006754	ENSG00000008282	SYPL1	H-SP1|SYPL	synaptophysin like 1	protein-coding
1339	chr12	113554445	113555080	+	0	NA	intron (NM_004658, intron 9 of 21)	intron (NM_004658, intron 9 of 21)	18642	NM_001301202	8437	Hs.528693	NM_004658	ENSG00000111344	RASAL1	RASAL	RAS protein activator like 1	protein-coding
2338	chr16	67396859	67397080	+	0	NA	intron (NM_018296, intron 5 of 13)	AluSx|SINE|Alu	15711	NM_001161575	55282	Hs.125139	NM_018296	ENSG00000159708	LRRC36	RORBP70|XLHSRF2	leucine rich repeat containing 36	protein-coding
4002	chr3	170910458	170910522	+	0	NA	intron (NM_001161560, intron 5 of 31)	intron (NM_001161560, intron 5 of 31)	-85942	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
3866	chr3	73160276	73160337	+	0	NA	Intergenic	U2|snRNA|snRNA	49496	NM_018029	55096	Hs.658858	NM_018029	ENSG00000255423	EBLN2	EBLN-2	endogenous Bornavirus-like nucleoprotein 2	protein-coding
4741	chr6	24213150	24213293	+	0	NA	intron (NM_016356, intron 7 of 9)	intron (NM_016356, intron 7 of 9)	86807	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
3781	chr22	29329988	29330192	+	0	NA	intron (NM_032173, intron 1 of 8)	intron (NM_032173, intron 1 of 8)	16713	NM_032173	84133	Hs.604200	NM_032173	ENSG00000183579	ZNRF3	BK747E2.3|RNF203	zinc and ring finger 3	protein-coding
2120	chr15	92079977	92080139	+	0	NA	Intergenic	Intergenic	73489	NR_110106	101926928	Hs.638788	NR_110106	ENSG00000258551	CRAT37	-	cervical cancer-associated transcript 37	ncRNA
4603	chr5	154773776	154774054	+	0	NA	Intergenic	Intergenic	380600	NM_001099293	285643	Hs.567824	NM_001099293	ENSG00000226650	KIF4B	-	kinesin family member 4B	protein-coding
6284	chrX	58580393	58580598	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-643428	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger, X-linked, duplicated A	protein-coding
4636	chr6	3209409	3209473	+	0	NA	Intergenic	Intergenic	-13440	NR_038295	100507194	Hs.678053	NR_038295	ENSG00000230269	LOC100507194	-	uncharacterized LOC100507194	ncRNA
1858	chr14	78348454	78348588	+	0	NA	intron (NM_020421, intron 4 of 10)	intron (NM_020421, intron 4 of 10)	82095	NM_020421	57143	Hs.413208	NM_020421	ENSG00000063761	ADCK1	-	aarF domain containing kinase 1	protein-coding
6486	chrY	28793348	28793457	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	918765	NR_002176	474148	Hs.511777	NR_002176	ENSG00000280961	TTTY3B	LNCRNA00122|NCRNA00122	testis-specific transcript, Y-linked 3B (non-protein coding)	ncRNA
718	chr10	98308551	98308790	+	0	NA	intron (NM_020123, intron 7 of 14)	intron (NM_020123, intron 7 of 14)	-34987	NM_012465	7093	Hs.154296	NM_012465	ENSG00000095587	TLL2	-	tolloid like 2	protein-coding
1581	chr13	107862683	107862825	+	0	NA	intron (NM_001080396, intron 2 of 2)	intron (NM_001080396, intron 2 of 2)	320842	NR_031671	100302286		NR_031671	ENSG00000221650	MIR1267	MIRN1267|hsa-mir-1267	microRNA 1267	ncRNA
2147	chr15	101679582	101679671	+	0	NA	Intergenic	Intergenic	112511	NM_014918	22856	Hs.110488	NM_014918	ENSG00000131873	CHSY1	CHSY|CSS1|ChSy-1|TPBS	chondroitin sulfate synthase 1	protein-coding
4689	chr6	20691520	20691912	+	0	NA	intron (NM_017774, intron 5 of 15)	intron (NM_017774, intron 5 of 15)	157028	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
1604	chr13	110699913	110700275	+	0	NA	Intergenic	Intergenic	-5538	NR_126387	104355146	Hs.508690	NR_126387	ENSG00000231428	LINC00396	-	long intergenic non-protein coding RNA 396	ncRNA
1507	chr13	79640753	79641059	+	0	NA	Intergenic	Intergenic	-226721	NR_046869	100874126	Hs.577893	NR_046869		LINC00331	NCRNA00331	long intergenic non-protein coding RNA 331	ncRNA
3997	chr3	170910078	170910208	+	0	NA	intron (NM_001161560, intron 5 of 31)	intron (NM_001161560, intron 5 of 31)	-85595	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
6163	chrUn_gl000216	23067	23697	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
868	chr11	51571953	51572013	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	56701	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
4592	chr5	152502068	152502369	+	0	NA	Intergenic	Intergenic	-150309	NR_109877	101927134	Hs.531423	NR_109877	ENSG00000249484	LINC01470	-	long intergenic non-protein coding RNA 1470	ncRNA
4096	chr4	10356431	10356795	+	0	NA	Intergenic	MER50B|LTR|ERV1	102419	NM_053042	85460	Hs.455089	NM_053042	ENSG00000178163	ZNF518B	-	zinc finger protein 518B	protein-coding
4736	chr6	24077050	24077330	+	0	NA	Intergenic	L1PB3|LINE|L1	-49224	NM_080723	140767	Hs.726270	NM_080723	ENSG00000152954	NRSN1	VMP|p24	neurensin 1	protein-coding
1140	chr12	32229707	32229777	+	0	NA	Intergenic	AluJb|SINE|Alu	-30443	NM_001003398	636	Hs.505202	NM_001714	ENSG00000151746	BICD1	BICD	BICD cargo adaptor 1	protein-coding
4922	chr6	90687469	90687557	+	0	NA	intron (NM_021813, intron 6 of 8)	intron (NM_021813, intron 6 of 8)	83325	NM_032602	84694	Hs.334499	NM_032602	ENSG00000135355	GJA10	CX62	gap junction protein alpha 10	protein-coding
3417	chr2	229948641	229948705	+	0	NA	intron (NM_001330157, intron 1 of 1)	intron (NM_001330157, intron 1 of 1)	148135	NM_001330156	55022	Hs.745038	NM_017933	ENSG00000153823	PID1	HMFN2073|NYGGF4|P-CLI1|PCLI1	phosphotyrosine interaction domain containing 1	protein-coding
275	chr1	121355541	121355557	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	94639	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
5189	chr7	36647244	36647472	+	0	NA	intron (NM_001637, intron 11 of 20)	LTR78|LTR|ERV1	-7632	NR_046764	100874264	Hs.690994	NR_046764	ENSG00000230539	AOAH-IT1	-	AOAH intronic transcript 1	ncRNA
2035	chr15	58535081	58535325	+	0	NA	Intergenic	Intergenic	104808	NM_001320635	366	Hs.104624	NM_020980	ENSG00000103569	AQP9	AQP-9|HsT17287|SSC1|T17287	aquaporin 9	protein-coding
6073	chr9	135347398	135347575	+	0	NA	intron (NM_001282957, intron 1 of 5)	intron (NM_001282957, intron 1 of 5)	61903	NM_001282957	389799	Hs.201709	NM_207417	ENSG00000188523	CFAP77	C9orf171	cilia and flagella associated protein 77	protein-coding
197	chr1	85603272	85603571	+	0	NA	Intergenic	Intergenic	3944	NR_039619	100616481		NR_039619	ENSG00000266110	MIR4423	mir-4423	microRNA 4423	ncRNA
4459	chr5	49440550	49440552	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	296683	NM_198449	133418	Hs.561411	NM_198449	ENSG00000170571	EMB	GP70	embigin	protein-coding
2208	chr16	30143339	30143414	+	0	NA	Intergenic	L1M4b|LINE|L1	-8746	NM_001109891	5595	Hs.861	NM_002746	ENSG00000102882	MAPK3	ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK	mitogen-activated protein kinase 3	protein-coding
3314	chr2	174095983	174096070	+	0	NA	intron (NM_016653, intron 12 of 19)	intron (NM_016653, intron 12 of 19)	50738	NR_033882	339751	Hs.570083	NR_033882	ENSG00000238133	MAP3K20-AS1	MLK7-AS1	MAP3K20 antisense RNA 1	ncRNA
3626	chr21	10820163	10820177	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	170773	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
1731	chr14	54810735	54810768	+	0	NA	Intergenic	Intergenic	-52835	NM_001330173	1033	Hs.84113	NM_005192	ENSG00000100526	CDKN3	CDI1|CIP2|KAP|KAP1	cyclin dependent kinase inhibitor 3	protein-coding
853	chr11	47485955	47486380	+	0	NA	Intergenic	Intergenic	-15437	NM_005055	5913	Hs.81218	NM_005055	ENSG00000165917	RAPSN	CMS11|CMS4C|FADS|RAPSYN|RNF205	receptor associated protein of the synapse	protein-coding
4024	chr3	176999795	177000087	+	0	NA	Intergenic	Intergenic	-12289	NR_047465	100820709	Hs.518409	NR_047465	ENSG00000203645	LINC00501	-	long intergenic non-protein coding RNA 501	ncRNA
5820	chr8	142877772	142878163	+	0	NA	Intergenic	Intergenic	-10293	NR_031636	100302147		NR_031636	ENSG00000221768	MIR1302-7	MIRN1302-7|hsa-mir-1302-7	microRNA 1302-7	ncRNA
5187	chr7	34767190	34767370	+	0	NA	intron (NR_015356, intron 3 of 4)	intron (NR_015356, intron 3 of 4)	30604	NR_033665	404744	Hs.487951	NM_207283	ENSG00000197085	NPSR1-AS1	AAA1	NPSR1 antisense RNA 1	ncRNA
1500	chr13	78066995	78067333	+	0	NA	Intergenic	Intergenic	-42645	NM_144777	8796	Hs.534699	NM_003843	ENSG00000136155	SCEL	-	sciellin	protein-coding
4812	chr6	49707593	49707689	+	0	NA	intron (NM_001190986, intron 1 of 7)	intron (NM_001190986, intron 1 of 7)	4527	NM_001190986	10321	Hs.404466	NM_006061	ENSG00000096006	CRISP3	Aeg2|CRISP-3|CRS3|SGP28|dJ442L6.3	cysteine rich secretory protein 3	protein-coding
4275	chr4	94104916	94105369	+	0	NA	intron (NM_001286838, intron 3 of 14)	intron (NM_001286838, intron 3 of 14)	-644936	NM_005172	474	Hs.532680	NM_005172	ENSG00000172238	ATOH1	ATH1|HATH1|MATH-1|bHLHa14	atonal bHLH transcription factor 1	protein-coding
6265	chrX	20380789	20380843	+	0	NA	Intergenic	Intergenic	-96066	NM_004586	6197	Hs.445387	NM_004586	ENSG00000177189	RPS6KA3	CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2	ribosomal protein S6 kinase A3	protein-coding
4393	chr5	2733881	2734159	+	0	NA	Intergenic	Intergenic	17749	NM_001134222	153572	Hs.282089	NM_033267	ENSG00000170561	IRX2	IRXA2	iroquois homeobox 2	protein-coding
2136	chr15	97243337	97243369	+	0	NA	Intergenic	LFSINE_Vert|SINE|SINE	81531	NR_102754	100652749	Hs.303588	NR_102753	ENSG00000259282	SPATA8-AS1	-	SPATA8 antisense RNA 1 (head to head)	ncRNA
5693	chr8	85165560	85165757	+	0	NA	intron (NM_001100391, intron 1 of 8)	AluSg|SINE|Alu	68558	NM_001100391	138046	Hs.121663	NM_173848	ENSG00000184672	RALYL	HNRPCL3	RALY RNA binding protein-like	protein-coding
4175	chr4	49150367	49150726	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	161887	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
4103	chr4	20356201	20356314	+	0	NA	intron (NM_001289136, intron 4 of 35)	intron (NM_001289136, intron 4 of 35)	-37555	NR_037876	100505893	Hs.665305	NR_037876	ENSG00000248228	SLIT2-IT1	-	SLIT2 intronic transcript 1	ncRNA
2685	chr18	42433006	42433095	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	117081	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
4073	chr3	194915739	194916103	+	0	NA	intron (NM_152531, intron 2 of 3)	intron (NM_152531, intron 2 of 3)	47321	NR_102711	101410543	Hs.658170	NR_102710	ENSG00000230266	XXYLT1-AS2	-	XXYLT1 antisense RNA 2	ncRNA
3410	chr2	229311465	229311731	+	0	NA	Intergenic	Intergenic	-265237	NM_030623	80309	Hs.436306	NM_030623	ENSG00000153820	SPHKAP	SKIP	SPHK1 interactor, AKAP domain containing	protein-coding
3517	chr20	26318377	26318389	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-128514	NR_040095	284801	Hs.370699	NR_040095	ENSG00000227195	MIR663AHG	-	MIR663A host gene	ncRNA
1295	chr12	104074216	104074913	+	0	NA	intron (NM_017564, intron 25 of 68)	MLT1K|LTR|ERVL-MaLR	93495	NM_017564	55576	Hs.408249	NM_017564	ENSG00000136011	STAB2	FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1	stabilin 2	protein-coding
3028	chr2	56066752	56067141	+	0	NA	Intergenic	Intergenic	84352	NM_001039349	2202	Hs.76224	NM_004105	ENSG00000115380	EFEMP1	DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5	EGF containing fibulin like extracellular matrix protein 1	protein-coding
5403	chr7	114678294	114678618	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	-40556	NR_120521	102724386	Hs.352357	NR_120521	ENSG00000225535	LINC01393	-	long intergenic non-protein coding RNA 1393	ncRNA
2832	chr19	19892650	19892918	+	0	NA	Intergenic	Harlequin-int|LTR|ERV1	-5562	NR_026956	284440	Hs.665307	NR_026956		LINC00663	-	long intergenic non-protein coding RNA 663	ncRNA
3978	chr3	149137124	149137155	+	0	NA	Intergenic	Intergenic	-41571	NM_014220	4071	Hs.351316	NM_014220	ENSG00000169908	TM4SF1	H-L6|L6|M3S1|TAAL6	transmembrane 4 L six family member 1	protein-coding
1111	chr12	12161555	12162151	+	0	NA	Intergenic	Intergenic	-62025	NM_138723	79370	Hs.210343	NM_030766	ENSG00000121380	BCL2L14	BCLG	BCL2 like 14	protein-coding
3281	chr2	159830235	159830528	+	0	NA	intron (NM_033394, intron 1 of 26)	intron (NM_033394, intron 1 of 26)	5235	NM_033394	85461	Hs.61590	NM_033394	ENSG00000115183	TANC1	ROLSB|TANC	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding
6018	chr9	99997484	99997625	+	0	NA	intron (NR_136286, intron 1 of 17)	intron (NR_136286, intron 1 of 17)	-3154	NR_036527	57653	Hs.435629	NR_036527	ENSG00000255036	LOC100499484-C9ORF174	-	LOC100499484-C9orf174 readthrough	ncRNA
3249	chr2	136899420	136899504	+	0	NA	Intergenic	Intergenic	-23737	NM_003467	7852	Hs.593413	NM_003467	ENSG00000121966	CXCR4	CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS	C-X-C motif chemokine receptor 4	protein-coding
3271	chr2	150742194	150742308	+	0	NA	Intergenic	Intergenic	-297921	NM_015702	27249	Hs.5324	NM_015702	ENSG00000168288	MMADHC	C2orf25|CL25022|cblD	methylmalonic aciduria and homocystinuria, cblD type	protein-coding
4055	chr3	183347433	183347728	+	0	NA	Intergenic	Intergenic	-5831	NM_017644	54800	Hs.407709	NM_017644	ENSG00000114796	KLHL24	DRE1|KRIP6	kelch like family member 24	protein-coding
4608	chr5	158227930	158228247	+	0	NA	intron (NM_001324107, intron 8 of 15)	intron (NM_001324107, intron 8 of 15)	298682	NM_001324101	1879	Hs.573143	NM_024007	ENSG00000164330	EBF1	COE1|EBF|O/E-1|OLF1	early B-cell factor 1	protein-coding
2238	chr16	33896357	33896385	+	0	NA	Intergenic	HSATII|Satellite|Satellite	66132	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
6219	chrUn_gl000225	13826	14570	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
1878	chr14	82533800	82534049	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-444519	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
5686	chr8	82505311	82505730	+	0	NA	Intergenic	Intergenic	-61895	NM_001105281	646486	Hs.586370	NM_001105281	ENSG00000197416	FABP12	-	fatty acid binding protein 12	protein-coding
4807	chr6	47255893	47256056	+	0	NA	intron (NM_014452, intron 1 of 5)	L1ME3A|LINE|L1	21709	NM_014452	27242	Hs.443577	NM_014452	ENSG00000146072	TNFRSF21	BM-018|CD358|DR6	TNF receptor superfamily member 21	protein-coding
2388	chr16	84172394	84172463	+	0	NA	intron (NM_031463, intron 1 of 5)	intron (NM_031463, intron 1 of 5)	6372	NM_031463	83693	Hs.555992	NM_031463	ENSG00000103160	HSDL1	SDR12C3	hydroxysteroid dehydrogenase like 1	protein-coding
2938	chr2	9319452	9319663	+	0	NA	Intergenic	Intergenic	-27337	NM_001135191	8853	Hs.555902	NM_003887	ENSG00000151693	ASAP2	AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding
1690	chr14	37240824	37240874	+	0	NA	intron (NM_030631, intron 3 of 9)	intron (NM_030631, intron 3 of 9)	114076	NM_006194	5083	Hs.132576	NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding
2964	chr2	27712332	27712475	+	0	NA	intron (NM_015662, intron 1 of 47)	intron (NM_015662, intron 1 of 47)	275	NM_015662	26160	Hs.127401	NM_015662	ENSG00000138002	IFT172	BBS20|NPHP17|RP71|SLB|SRTD10|osm-1|wim	intraflagellar transport 172	protein-coding
5126	chr7	8216418	8216432	+	0	NA	intron (NM_004968, intron 6 of 13)	MIRb|SINE|MIR	85257	NM_022307	3382	Hs.487561	NM_004968	ENSG00000003147	ICA1	ICA69|ICAp69	islet cell autoantigen 1	protein-coding
3915	chr3	114120743	114120862	+	0	NA	intron (NM_001164343, intron 8 of 11)	intron (NM_001164343, intron 8 of 11)	-18313	NM_001164342	26137	Hs.202577	NM_015642	ENSG00000181722	ZBTB20	DPZF|HOF|ODA-8S|PRIMS|ZNF288	zinc finger and BTB domain containing 20	protein-coding
4516	chr5	121651868	121652614	+	0	NA	intron (NM_001308107, intron 1 of 8)	intron (NM_001308107, intron 1 of 8)	4477	NM_001308100	9627	Hs.426463	NM_005460	ENSG00000064692	SNCAIP	SYPH1|Sph1	synuclein alpha interacting protein	protein-coding
617	chr10	39138045	39138053	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	148322	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
4136	chr4	49108681	49113279	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	122321	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3943	chr3	124240370	124240504	+	0	NA	intron (NM_001024660, intron 33 of 59)	intron (NM_001024660, intron 33 of 59)	-63069	NM_001322993	8997	Hs.8004	NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
5151	chr7	25818065	25818393	+	0	NA	Intergenic	Intergenic	171377	NR_029597	406940		NR_029597	ENSG00000199085	MIR148A	MIRN148|MIRN148A|hsa-mir-148|mir-148a	microRNA 148a	ncRNA
5244	chr7	61753753	61753789	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1010663	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
3801	chr22	40197185	40197192	+	0	NA	intron (NM_152512, intron 5 of 6)	intron (NM_152512, intron 5 of 6)	92606	NM_152512	150350	Hs.474869	NM_152512	ENSG00000176177	ENTHD1	CACNA1I|dJ370M22.3	ENTH domain containing 1	protein-coding
4061	chr3	189022139	189022320	+	0	NA	intron (NM_198485, intron 4 of 5)	intron (NM_198485, intron 4 of 5)	-63846	NR_046722	100874027	Hs.616080	NR_046722	ENSG00000230115	TPRG1-AS2	-	TPRG1 antisense RNA 2	ncRNA
2918	chr2	5251696	5251990	+	0	NA	Intergenic	Intergenic	-548031	NR_034134	727982	Hs.444391	NR_034134	ENSG00000231532	LINC01249	-	long intergenic non-protein coding RNA 1249	ncRNA
5704	chr8	93170501	93170572	+	0	NA	Intergenic	L2a|LINE|L2	9203	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
3821	chr3	2004271	2004356	+	0	NA	Intergenic	Intergenic	-136237	NM_175607	152330	Hs.298705	NM_175607	ENSG00000144619	CNTN4	AXCAM|BIG-2	contactin 4	protein-coding
1594	chr13	108490846	108491140	+	0	NA	intron (NM_001080396, intron 1 of 2)	intron (NM_001080396, intron 1 of 2)	-3187	NR_046848	100874375	Hs.653972	NR_046848		FAM155A-IT1	-	FAM155A intronic transcript 1	ncRNA
251	chr1	115848834	115849024	+	0	NA	intron (NM_002506, intron 1 of 2)	intron (NM_002506, intron 1 of 2)	31928	NM_002506	4803	Hs.2561	NM_002506	ENSG00000134259	NGF	Beta-NGF|HSAN5|NGFB	nerve growth factor	protein-coding
4986	chr6	107475801	107475974	+	0	NA	exon (NM_020381, exon 8 of 8)	exon (NM_020381, exon 8 of 8)	-40251	NM_001080450	57673	Hs.418045	NM_001080450	ENSG00000178409	BEND3	KIAA1553	BEN domain containing 3	protein-coding
369	chr1	182205622	182205634	+	0	NA	intron (NR_104175, intron 2 of 2)	intron (NR_104175, intron 2 of 2)	77568	NR_104175	400799	Hs.634884	NR_104175	ENSG00000228918	LINC01344	GS1-122H1.2	long intergenic non-protein coding RNA 1344	ncRNA
6447	chrY	13850218	13850612	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	682974	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1548	chr13	99234186	99234322	+	0	NA	Intergenic	Intergenic	-4849	NM_001032296	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
5634	chr8	61532767	61532881	+	0	NA	intron (NM_001242644, intron 6 of 6)	intron (NM_001242644, intron 6 of 6)	-58500	NM_017780	55636	Hs.20395	NM_017780	ENSG00000171316	CHD7	CRG|HH5|IS3|KAL5	chromodomain helicase DNA binding protein 7	protein-coding
3900	chr3	106961907	106961918	+	0	NA	intron (NR_028302, intron 1 of 3)	L1ME3|LINE|L1	2373	NR_028302	344595	Hs.543039	NR_028301	ENSG00000243701	DUBR	DUM|LINC00883|LINC0883	DPPA2 upstream binding RNA	ncRNA
5434	chr7	126417845	126417962	+	0	NA	intron (NM_001127323, intron 6 of 10)	intron (NM_001127323, intron 6 of 10)	280335	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
4053	chr3	183096085	183096302	+	0	NA	intron (NM_015078, intron 3 of 29)	intron (NM_015078, intron 3 of 29)	49864	NM_015078	23101	Hs.208267	NM_015078	ENSG00000053524	MCF2L2	ARHGEF22	MCF.2 cell line derived transforming sequence-like 2	protein-coding
6435	chrY	13842851	13842858	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	690535	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
1823	chr14	70597146	70597277	+	0	NA	intron (NM_033262, intron 2 of 7)	intron (NM_033262, intron 2 of 7)	-50277	NM_001130417	6547	Hs.337696	NM_033262	ENSG00000100678	SLC8A3	NCX3	solute carrier family 8 member A3	protein-coding
5026	chr6	123066225	123066337	+	0	NA	Intergenic	HERVE_a-int|LTR|ERV1	-4065	NM_001319042	2173	Hs.26770	NM_001446	ENSG00000164434	FABP7	B-FABP|BLBP|FABPB|MRG	fatty acid binding protein 7	protein-coding
2267	chr16	35239561	35239591	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	258653	NR_033985	400533	Hs.499135	NR_033985	ENSG00000261122	FLJ26245	-	uncharacterized LOC400533	ncRNA
2537	chr17	76390119	76390278	+	0	NA	intron (NR_110602, intron 2 of 8)	AluSx|SINE|Alu	15499	NM_024419	9489	Hs.654671	NM_024419	ENSG00000087157	PGS1	-	phosphatidylglycerophosphate synthase 1	protein-coding
5999	chr9	95715131	95715190	+	0	NA	intron (NM_001083536, intron 1 of 17)	intron (NM_001083536, intron 1 of 17)	5559	NM_001083536	89846	Hs.411081	NM_033086	ENSG00000127084	FGD3	ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding
887	chr11	51582110	51583224	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	67385	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
5975	chr9	87793352	87793716	+	0	NA	Intergenic	LTR75|LTR|ERVL	508242	NM_001018064	4915	Hs.494312	NM_006180	ENSG00000148053	NTRK2	GP145-TrkB|TRKB|trk-B	neurotrophic receptor tyrosine kinase 2	protein-coding
5520	chr7	152375535	152375582	+	0	NA	Intergenic	L1MC4a|LINE|L1	-2308	NM_005431	7516	Hs.647093	NM_005431	ENSG00000196584	XRCC2	FANCU	X-ray repair cross complementing 2	protein-coding
72	chr1	33918232	33918414	+	0	NA	Intergenic	L1MA2|LINE|L1	-19909	NM_145238	7579	Hs.442705	NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
3371	chr2	211546062	211546272	+	0	NA	Intergenic	Intergenic	63872	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
1496	chr13	73939361	73939469	+	0	NA	Intergenic	Intergenic	-198966	NR_047009	100874155	Hs.672679	NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
1682	chr14	36971794	36972151	+	0	NA	intron (NR_138596, intron 1 of 4)	intron (NR_138596, intron 1 of 4)	11018	NR_138598	253970	Hs.509165	NM_001101341	ENSG00000229415	SFTA3	NANCI|SFTPH|SP-H	surfactant associated 3	protein-coding
2781	chr18	64800725	64801177	+	0	NA	Intergenic	Intergenic	52130	NR_049809	100847002		NR_049809	ENSG00000263354	MIR5011	-	microRNA 5011	ncRNA
1108	chr12	12008989	12009022	+	0	NA	intron (NM_001987, intron 4 of 7)	intron (NM_001987, intron 4 of 7)	206217	NM_001987	2120	Hs.504765	NM_001987	ENSG00000139083	ETV6	TEL|TEL/ABL|THC5	ETS variant 6	protein-coding
1014	chr11	114883862	114883953	+	0	NA	Intergenic	Intergenic	-320389	NR_135108	105369509	Hs.736064	NR_135108		LOC105369509	-	uncharacterized LOC105369509	ncRNA
2282	chr16	46454880	46454887	+	0	NA	Intergenic	HSATII|Satellite|Satellite	148126	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
843	chr11	33654720	33654967	+	0	NA	intron (NM_012194, intron 15 of 19)	AluSq2|SINE|Alu	67443	NM_001166692	100131378	Hs.709466	NM_001166692	ENSG00000205177	C11orf91	-	chromosome 11 open reading frame 91	protein-coding
2760	chr18	55647690	55648186	+	0	NA	Intergenic	Intergenic	-63672	NM_015277	23327	Hs.185677	NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
2529	chr17	75731398	75731580	+	0	NA	Intergenic	Intergenic	-6848	NR_104134	100132174	Hs.640110	NR_104134	ENSG00000267790	LINC01987	-	long intergenic non-protein coding RNA 1987	ncRNA
6499	chrY	58979852	58980352	+	0	NA	Intergenic	(CATTC)n|Simple_repeat|Simple_repeat	-120301	NM_005840	10251	Hs.381912	NM_005840	ENSG00000168939	SPRY3	spry-3	sprouty RTK signaling antagonist 3	protein-coding
4677	chr6	19535591	19535759	+	0	NA	Intergenic	Intergenic	85623	NR_134615	105374960	Hs.519913	NR_134615		LOC105374960	-	uncharacterized LOC105374960	ncRNA
2315	chr16	52549163	52549392	+	0	NA	intron (NM_001080430, intron 1 of 6)	MamRep564|Unknown|Unknown	31529	NM_001080430	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
2257	chr16	33975917	33976165	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-13538	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
514	chr1	246362469	246362475	+	0	NA	intron (NM_001167740, intron 5 of 11)	L1PA16|LINE|L1	218242	NM_022743	64754	Hs.567571	NM_022743	ENSG00000185420	SMYD3	KMT3E|ZMYND1|ZNFN3A1|bA74P14.1	SET and MYND domain containing 3	protein-coding
610	chr10	39121486	39121576	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	131804	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
3973	chr3	139187581	139187731	+	0	NA	intron (NM_004164, intron 1 of 3)	intron (NM_004164, intron 1 of 3)	7696	NM_004164	5948	Hs.655516	NM_004164	ENSG00000114113	RBP2	CRABP-II|CRBP2|CRBPII|RBPC2	retinol binding protein 2	protein-coding
6454	chrY	13859828	13860199	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	673376	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
2444	chr17	25267532	25267545	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	148729	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
725	chr10	100116919	100117052	+	0	NA	Intergenic	L2|LINE|L2	38079	NR_031619	100302133		NR_031619	ENSG00000119943	MIR1287	MIRN1287|hsa-mir-1287|mir-1287	microRNA 1287	ncRNA
3921	chr3	117347465	117347714	+	0	NA	Intergenic	Intergenic	707311	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA
6426	chrY	13838391	13838412	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	694988	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4088	chr4	8040352	8040828	+	0	NA	intron (NM_001130083, intron 9 of 20)	intron (NM_001130083, intron 9 of 20)	33153	NM_001286688	84448	Hs.233404	NM_032432	ENSG00000163995	ABLIM2	-	actin binding LIM protein family member 2	protein-coding
4290	chr4	113973574	113973769	+	0	NA	intron (NM_001148, intron 1 of 45)	intron (NM_001148, intron 1 of 45)	2886	NM_001148	287	Hs.620557	NM_001148	ENSG00000145362	ANK2	ANK-2|LQT4|brank-2	ankyrin 2	protein-coding
1994	chr15	37047534	37047701	+	0	NA	intron (NM_001321756, intron 9 of 9)	intron (NM_001321756, intron 9 of 9)	63090	NR_027320	161635	Hs.659822	NR_027320		CSNK1A1P1	CSNK1A1P	casein kinase 1 alpha 1 pseudogene 1	pseudo
5754	chr8	103985108	103985543	+	0	NA	intron (NR_126338, intron 3 of 3)	FLAM_A|SINE|Alu	-47923	NM_001695	528	Hs.86905	NM_001695	ENSG00000155097	ATP6V1C1	ATP6C|ATP6D|VATC|Vma5	ATPase H+ transporting V1 subunit C1	protein-coding
5348	chr7	91066391	91066675	+	0	NA	Intergenic	Intergenic	172750	NM_003505	8321	Hs.94234	NM_003505	ENSG00000157240	FZD1	-	frizzled class receptor 1	protein-coding
3252	chr2	145978308	145978671	+	0	NA	Intergenic	Intergenic	552955	NR_033870	401014	Hs.742290	NR_033870	ENSG00000226674	TEX41	DKFZp686O1327|LINC00953	testis expressed 41 (non-protein coding)	ncRNA
6083	chr9_gl000199_random	30942	31224	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
3907	chr3	111761446	111761543	+	0	NA	intron (NM_001042575, intron 2 of 15)	intron (NM_001042575, intron 2 of 15)	3029	NR_026734	344805	Hs.435490	NM_001042575	ENSG00000176040	TMPRSS7	-	transmembrane protease, serine 7	protein-coding
3857	chr3	55278822	55278875	+	0	NA	Intergenic	Intergenic	236578	NM_001256105	7474	Hs.643085	NM_003392	ENSG00000114251	WNT5A	hWNT5A	Wnt family member 5A	protein-coding
1136	chr12	31033369	31033517	+	0	NA	Intergenic	Intergenic	-46395	NM_001080509	441631	Hs.505141	NM_001080509	ENSG00000110900	TSPAN11	VSSW1971	tetraspanin 11	protein-coding
4048	chr3	182314279	182314451	+	0	NA	Intergenic	Intergenic	-89453	NR_134941	105374244	Hs.130176	NR_134941	ENSG00000244247	LINC01995	-	long intergenic non-protein coding RNA 1995	ncRNA
5429	chr7	126218296	126218504	+	0	NA	intron (NM_001127323, intron 8 of 10)	intron (NM_001127323, intron 8 of 10)	479838	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
4183	chr4	49157704	49158646	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	169516	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
1175	chr12	34853984	34853986	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	678769	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
4011	chr3	174905809	174906104	+	0	NA	intron (NM_207015, intron 2 of 13)	intron (NM_207015, intron 2 of 13)	-72924	NR_046390	100862679	Hs.148810	NR_046390	ENSG00000230292	NAALADL2-AS3	-	NAALADL2 antisense RNA 3	ncRNA
1683	chr14	36972152	36972818	+	0	NA	intron (NR_138596, intron 1 of 4)	intron (NR_138596, intron 1 of 4)	10505	NR_138598	253970	Hs.509165	NM_001101341	ENSG00000229415	SFTA3	NANCI|SFTPH|SP-H	surfactant associated 3	protein-coding
1326	chr12	106573274	106573626	+	0	NA	Intergenic	Intergenic	-39639	NM_014840	9891	Hs.524692	NM_014840	ENSG00000074590	NUAK1	ARK5	NUAK family kinase 1	protein-coding
6402	chrY	13808812	13808888	+	0	NA	Intergenic	Intergenic	724539	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3714	chr21	41047644	41048098	+	0	NA	Intergenic	Intergenic	18624	NM_033170	10317	Hs.733638	NM_006057	ENSG00000183778	B3GALT5	B3GalT-V|B3GalTx|B3T5|GLCT5|beta-1,3-GalTase 5|beta-3-Gx-T5|beta3Gal-T5	beta-1,3-galactosyltransferase 5	protein-coding
1382	chr12	119808036	119808546	+	0	NA	intron (NM_178499, intron 1 of 13)	intron (NM_178499, intron 1 of 13)	35774	NM_178499	160777	Hs.98188	NM_178499	ENSG00000183273	CCDC60	-	coiled-coil domain containing 60	protein-coding
1452	chr13	32619972	32620277	+	0	NA	intron (NM_023037, intron 1 of 60)	intron (NM_023037, intron 1 of 60)	-14348	NR_103839	100507099	Hs.536364	NR_103839		FRY-AS1	-	FRY antisense RNA 1	ncRNA
2384	chr16	83081824	83081939	+	0	NA	intron (NM_001220489, intron 3 of 12)	L3|LINE|CR1	-57978	NR_110937	101928417	Hs.569538	NR_110937	ENSG00000260832	LOC101928417	-	uncharacterized LOC101928417	ncRNA
2637	chr18	31895914	31896009	+	0	NA	Intergenic	Intergenic	-92446	NM_001198546	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
5771	chr8	109951790	109952029	+	0	NA	Intergenic	L1ME3|LINE|L1	-147744	NM_003301	7201	Hs.3022	NM_003301	ENSG00000174417	TRHR	TRH-R	thyrotropin releasing hormone receptor	protein-coding
6234	chrUn_gl000225	133952	134095	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
589	chr10	39088180	39088238	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	98482	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
1337	chr12	113553872	113554130	+	0	NA	intron (NM_004658, intron 9 of 21)	AluSz|SINE|Alu	19403	NM_001301202	8437	Hs.528693	NM_004658	ENSG00000111344	RASAL1	RASAL	RAS protein activator like 1	protein-coding
2098	chr15	74515799	74515854	+	0	NA	Intergenic	Intergenic	-12804	NM_025055	80125	Hs.383206	NM_025055	ENSG00000140481	CCDC33	CT61|HP11097	coiled-coil domain containing 33	protein-coding
3101	chr2	89852830	89853050	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	741056	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
3837	chr3	24128965	24129175	+	0	NA	Intergenic	Intergenic	15668	NR_026834	152024	Hs.385606	NR_026834	ENSG00000224074	LINC00691	-	long intergenic non-protein coding RNA 691	ncRNA
6215	chrUn_gl000225	12784	13537	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
150	chr1	59544225	59544406	+	0	NA	intron (NR_110626, intron 2 of 2)	MIR|SINE|MIR	58167	NR_110626	101926925		NR_110626		LINC01358	-	long intergenic non-protein coding RNA 1358	ncRNA
3018	chr2	51048691	51048872	+	0	NA	intron (NM_001135659, intron 5 of 23)	intron (NM_001135659, intron 5 of 23)	-125381	NR_130470	103504737		NR_130470	ENSG00000216191	MIR8485	hsa-mir-8485	microRNA 8485	ncRNA
245	chr1	112434773	112434932	+	0	NA	intron (NM_004980, intron 2 of 7)	intron (NM_004980, intron 2 of 7)	-17427	NR_046619	100873995	Hs.535274	NR_046619	ENSG00000237556	KCND3-AS1	-	KCND3 antisense RNA 1	ncRNA
2511	chr17	64173606	64173631	+	0	NA	intron (NM_001199165, intron 2 of 26)	L1MA3|LINE|L1	14369	NM_001302891	201134	Hs.408676	NM_145036	ENSG00000154240	CEP112	CCDC46|MACOCO	centrosomal protein 112	protein-coding
2604	chr18	21574718	21574857	+	0	NA	intron (NR_110796, intron 5 of 5)	MER5B|DNA|hAT-Charlie	2050	NM_153211	125488	Hs.128576	NM_153211	ENSG00000168234	TTC39C	C18orf17|HsT2697	tetratricopeptide repeat domain 39C	protein-coding
4974	chr6	105708398	105708635	+	0	NA	Intergenic	Intergenic	-80658	NM_022361	64208	Hs.458336	NM_022361	ENSG00000132429	POPDC3	POP3|bA355M14.1	popeye domain containing 3	protein-coding
2546	chr17_gl000205_random	84399	86645	+	0	NA	Intergenic	Intergenic	-31101	NR_003682	403340	Hs.572501	NR_003682		MGC70870	-	C-terminal binding protein 2 pseudogene	pseudo
5943	chr9	71720263	71720382	+	0	NA	Intergenic	Intergenic	-15858	NM_001170414	9414	Hs.50382	NM_004817	ENSG00000119139	TJP2	C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2	tight junction protein 2	protein-coding
5498	chr7	144803295	144803410	+	0	NA	Intergenic	Intergenic	-270206	NM_001042482	27010	Hs.660232	NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
5651	chr8	65179503	65179762	+	0	NA	intron (NR_125826, intron 1 of 4)	intron (NR_125826, intron 1 of 4)	101483	NR_125826	102724623	Hs.586375	NR_125826	ENSG00000253554	LOC102724623	-	uncharacterized LOC102724623	ncRNA
4994	chr6	107951107	107951134	+	0	NA	intron (NM_018013, intron 5 of 6)	intron (NM_018013, intron 5 of 6)	102480	NM_001286409	256380	Hs.486109	NM_198081	ENSG00000146285	SCML4	dJ47M23.1	sex comb on midleg-like 4 (Drosophila)	protein-coding
2666	chr18	36684931	36685031	+	0	NA	Intergenic	Intergenic	517158	NR_030628	100126323		NR_030628	ENSG00000283615	MIR924	MIRN924|hsa-mir-924	microRNA 924	ncRNA
3012	chr2	50160911	50161048	+	0	NA	intron (NM_001330088, intron 17 of 17)	intron (NM_001330088, intron 17 of 17)	40362	NM_001320156	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
332	chr1	163795260	163795478	+	0	NA	Intergenic	L2c|LINE|L2	-402388	NR_104294	100422212	Hs.556898	NR_104294		LOC100422212	-	eukaryotic translation initiation factor 3 subunit J pseudogene	pseudo
1099	chr12	5486340	5486478	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-54871	NM_001102654	4908	Hs.99171	NM_002527	ENSG00000185652	NTF3	HDNF|NGF-2|NGF2|NT-3|NT3	neurotrophin 3	protein-coding
3599	chr21	10702026	10702144	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	288858	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
1965	chr14	99100205	99100239	+	0	NA	Intergenic	Intergenic	-77728	NM_182560	283598	Hs.448754	NM_182560	ENSG00000176605	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
5311	chr7	69288604	69288791	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	224792	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
5083	chr6	157551209	157551510	+	0	NA	Intergenic	Intergenic	193932	NM_018452	729515	Hs.157212	NM_018452	ENSG00000215712	TMEM242	BM033|C6orf35	transmembrane protein 242	protein-coding
4962	chr6	98962970	98963178	+	0	NA	Intergenic	Intergenic	-319506	NM_005604	5454	Hs.182505	NM_005604	ENSG00000184486	POU3F2	BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7	POU class 3 homeobox 2	protein-coding
34	chr1	9960561	9960875	+	0	NA	intron (NM_020248, intron 1 of 5)	intron (NM_020248, intron 1 of 5)	9598	NM_020248	56998	Hs.463759	NM_020248	ENSG00000178585	CTNNBIP1	ICAT	catenin beta interacting protein 1	protein-coding
745	chr10	119941253	119941262	+	0	NA	intron (NR_026940, intron 3 of 3)	intron (NR_026940, intron 3 of 3)	-134862	NM_001330167	22841	Hs.173656	NM_014904	ENSG00000107560	RAB11FIP2	Rab11-FIP2|nRip11	RAB11 family interacting protein 2	protein-coding
3691	chr21	37346973	37347056	+	0	NA	intron (NR_110418, intron 4 of 5)	intron (NR_110418, intron 4 of 5)	29951	NR_110418	101928269	Hs.589909	NR_110418		LOC101928269	-	uncharacterized LOC101928269	ncRNA
5673	chr8	81243808	81243850	+	0	NA	Intergenic	Intergenic	90205	NR_049894	100847056		NR_049894	ENSG00000265588	MIR5708	-	microRNA 5708	ncRNA
2656	chr18	35094943	35095242	+	0	NA	intron (NM_001025087, intron 1 of 12)	intron (NM_001025087, intron 1 of 12)	-48625	NR_132967	106635546		NR_132967		SNORA111	-	small nucleolar RNA, H/ACA box 111	snoRNA
3650	chr21	10849905	10850077	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	140952	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
2082	chr15	70380700	70380727	+	0	NA	intron (NM_001105192, intron 4 of 19)	intron (NM_001105192, intron 4 of 19)	6411	NM_001282982	7090	Hs.287362	NM_005078	ENSG00000140332	TLE3	ESG|ESG3|GRG3|HsT18976	transducin like enhancer of split 3	protein-coding
1410	chr12	129562383	129562570	+	0	NA	intron (NM_133448, intron 8 of 8)	(CA)n|Simple_repeat|Simple_repeat	-31759	NR_104173	283352	Hs.665667	NR_104172	ENSG00000249196	LOC283352	-	uncharacterized LOC283352	ncRNA
2613	chr18	25441748	25441879	+	0	NA	Intergenic	Intergenic	174736	NM_001308176	1000	Hs.464829	NM_001792	ENSG00000170558	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2	protein-coding
3056	chr2	67840250	67840717	+	0	NA	Intergenic	Intergenic	212211	NR_110271	101927701	Hs.348697	NR_110271	ENSG00000237013	LINC01812	-	long intergenic non-protein coding RNA 1812	ncRNA
2693	chr18	42711782	42711938	+	0	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	-81087	NM_001242692	8170	Hs.710927	NM_007163	ENSG00000132874	SLC14A2	HUT2|UT-A2|UT2|UTA|UTR|hUT-A6	solute carrier family 14 member 2	protein-coding
3789	chr22	35822714	35822873	+	0	NA	Intergenic	Intergenic	26677	NM_006739	4174	Hs.517582	NM_006739	ENSG00000100297	MCM5	CDC46|P1-CDC46	minichromosome maintenance complex component 5	protein-coding
4449	chr5	46334289	46334317	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-638083	NM_021072	348980	Hs.353176	NM_021072	ENSG00000164588	HCN1	BCNG-1|BCNG1|EIEE24|HAC-2	hyperpolarization activated cyclic nucleotide gated potassium channel 1	protein-coding
1434	chr13	26261336	26261788	+	0	NA	intron (NM_016529, intron 24 of 36)	intron (NM_016529, intron 24 of 36)	218650	NM_001313741	51761	Hs.444957	NM_016529	ENSG00000132932	ATP8A2	ATP|ATPIB|CAMRQ4|IB|ML-1	ATPase phospholipid transporting 8A2	protein-coding
6279	chrX	58561226	58561813	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-624452	NM_007156	7789	Hs.550094	NM_007156	ENSG00000198205	ZXDA	ZNF896	zinc finger, X-linked, duplicated A	protein-coding
4182	chr4	49157659	49157703	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	169022	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
2713	chr18	45748866	45749155	+	0	NA	intron (NM_001318841, intron 2 of 4)	intron (NM_001318841, intron 2 of 4)	-85330	NM_001039360	201501	Hs.515388	NM_001039360	ENSG00000184828	ZBTB7C	APM-1|APM1|ZBTB36|ZNF857C	zinc finger and BTB domain containing 7C	protein-coding
5461	chr7	130061596	130061834	+	0	NA	3' UTR (NM_001257160, exon 3 of 3)	3' UTR (NM_001257160, exon 3 of 3)	19336	NM_001257159	95681	Hs.368315	NM_018718	ENSG00000106477	CEP41	JBTS15|TSGA14	centrosomal protein 41	protein-coding
1547	chr13	99057793	99058038	+	0	NA	intron (NM_005766, intron 13 of 26)	intron (NM_005766, intron 13 of 26)	116464	NM_003576	8428	Hs.508514	NM_003576	ENSG00000102572	STK24	HEL-S-95|MST3|MST3B|STE20|STK3	serine/threonine kinase 24	protein-coding
2471	chr17	37926312	37926526	+	0	NA	intron (NM_001257413, intron 3 of 3)	intron (NM_001257413, intron 3 of 3)	8059	NM_001284516	22806	Hs.371680	NM_012481	ENSG00000161405	IKZF3	AIO|AIOLOS|ZNFN1A3	IKAROS family zinc finger 3	protein-coding
3457	chr20	4856583	4856729	+	0	NA	intron (NM_203327, intron 9 of 16)	intron (NM_203327, intron 9 of 16)	-52365	NM_014737	9770	Hs.631504	NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
1045	chr11	126458879	126459301	+	0	NA	intron (NM_032531, intron 1 of 16)	intron (NM_032531, intron 1 of 16)	-63583	NR_120532	101929427	Hs.600341	NR_120532	ENSG00000254607	LOC101929427	-	uncharacterized LOC101929427	ncRNA
6034	chr9	112013401	112013458	+	0	NA	intron (NM_018424, intron 13 of 15)	intron (NM_018424, intron 13 of 15)	69815	NM_018424	54566	Hs.591901	NM_018424	ENSG00000095203	EPB41L4B	CG1|EHM2	erythrocyte membrane protein band 4.1 like 4B	protein-coding
1619	chr13	113557720	113557956	+	0	NA	Intergenic	Intergenic	65114	NR_034002	100289410	Hs.667436	NR_034002		MCF2L-AS1	-	MCF2L antisense RNA 1	ncRNA
5881	chr9	20319756	20319937	+	0	NA	Intergenic	Intergenic	91390	NR_039684	100616229		NR_039684	ENSG00000263790	MIR4473	-	microRNA 4473	ncRNA
4265	chr4	83956308	83956508	+	0	NA	exon (NM_001258006, exon 1 of 9)	exon (NM_001258006, exon 1 of 9)	169	NM_001258006	51138	Hs.190384	NM_016129	ENSG00000138663	COPS4	CSN4|SGN4	COP9 signalosome subunit 4	protein-coding
5219	chr7	61079033	61079045	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	1685395	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
1069	chr11	129716347	129716510	+	0	NA	intron (NM_001331210, intron 2 of 6)	L2a|LINE|L2	30752	NM_001331211	120224	Hs.504301	NM_138788	ENSG00000151715	TMEM45B	-	transmembrane protein 45B	protein-coding
1224	chr12	78709224	78709391	+	0	NA	Intergenic	Intergenic	44219	NR_135021	105369860	Hs.156898	NR_135021	ENSG00000258220	LOC105369860	-	uncharacterized LOC105369860	ncRNA
368	chr1	182205485	182205621	+	0	NA	intron (NR_104175, intron 2 of 2)	intron (NR_104175, intron 2 of 2)	77643	NR_104175	400799	Hs.634884	NR_104175	ENSG00000228918	LINC01344	GS1-122H1.2	long intergenic non-protein coding RNA 1344	ncRNA
5998	chr9	93331323	93331870	+	0	NA	intron (NR_034157, intron 1 of 5)	intron (NR_034157, intron 1 of 5)	13432	NR_034157	340515	Hs.522284	NM_001105317		LINC01501	-	long intergenic non-protein coding RNA 1501	ncRNA
3078	chr2	69444834	69444908	+	0	NA	intron (NM_032208, intron 17 of 17)	intron (NM_032208, intron 17 of 17)	114057	NR_036073	100423030		NR_036073	ENSG00000266649	MIR3126	mir-3126	microRNA 3126	ncRNA
4007	chr3	171942336	171942724	+	0	NA	intron (NM_001135095, intron 3 of 25)	intron (NM_001135095, intron 3 of 25)	184186	NM_001135095	64778	Hs.744888	NM_022763	ENSG00000075420	FNDC3B	FAD104|PRO4979|YVTM2421	fibronectin type III domain containing 3B	protein-coding
6293	chrX	61684557	61689662	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	884109	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
4705	chr6	21188504	21188845	+	0	NA	intron (NM_017774, intron 13 of 15)	intron (NM_017774, intron 13 of 15)	323449	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
611	chr10	39124453	39124458	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	134728	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
1849	chr14	77506726	77506775	+	0	NA	promoter-TSS (NR_110554)	promoter-TSS (NR_110554)	-642	NR_110554	283575	Hs.651736	NR_110554	ENSG00000246548	LOC283575	-	uncharacterized LOC283575	ncRNA
849	chr11	47132310	47132992	+	0	NA	intron (NM_001003678, intron 3 of 8)	AluY|SINE|Alu	66025	NM_001242832	84364	Hs.436204	NM_032389	ENSG00000149182	ARFGAP2	IRZ|NBLA10535|ZFP289|ZNF289	ADP ribosylation factor GTPase activating protein 2	protein-coding
4680	chr6	19602632	19602851	+	0	NA	Intergenic	MLT1G3|LTR|ERVL-MaLR	152689	NR_134615	105374960	Hs.519913	NR_134615		LOC105374960	-	uncharacterized LOC105374960	ncRNA
492	chr1	228928168	228928422	+	0	NA	Intergenic	L2c|LINE|L2	57471	NM_021205	58480	Hs.647774	NM_021205	ENSG00000116574	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
5703	chr8	93169832	93170500	+	0	NA	Intergenic	L2a|LINE|L2	9573	NR_106988	102465753		NR_106988	ENSG00000280494	MIR7641-2	B-ATF|hsa-mir-7641-2	microRNA 7641-2	ncRNA
2740	chr18	53073382	53073409	+	0	NA	intron (NM_001330604, intron 5 of 19)	intron (NM_001330604, intron 5 of 19)	-2169	NM_001306208	6925	Hs.605153	NM_003199	ENSG00000196628	TCF4	E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19	transcription factor 4	protein-coding
208	chr1	87568388	87568616	+	0	NA	intron (NM_012262, intron 5 of 6)	MIR3|SINE|MIR	-26946	NR_026989	339524	Hs.306423	NM_207357	ENSG00000267272	LINC01140	-	long intergenic non-protein coding RNA 1140	ncRNA
2271	chr16	35239762	35239779	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	258847	NR_033985	400533	Hs.499135	NR_033985	ENSG00000261122	FLJ26245	-	uncharacterized LOC400533	ncRNA
3225	chr2	122012185	122012261	+	0	NA	intron (NM_014553, intron 2 of 14)	AluSx|SINE|Alu	30555	NM_014553	29842	Hs.156471	NM_014553	ENSG00000115112	TFCP2L1	CRTR1|LBP-9|LBP9	transcription factor CP2 like 1	protein-coding
6318	chrX	61870994	61871007	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	700218	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
292	chr1	142538566	142539108	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	174768	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	ankyrin repeat domain 20 family member A12, pseudogene	pseudo
2773	chr18	60823057	60823217	+	0	NA	intron (NM_000633, intron 2 of 2)	intron (NM_000633, intron 2 of 2)	163476	NM_000633	596	Hs.150749	NM_000633	ENSG00000171791	BCL2	Bcl-2|PPP1R50	BCL2, apoptosis regulator	protein-coding
6455	chrY	13860200	13860235	+	0	NA	Intergenic	Intergenic	673172	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
2445	chr17	25267546	25267939	+	0	NA	Intergenic	(GAGTG)n|Simple_repeat|Simple_repeat	148525	NR_135673	105371703	Hs.649918	NR_135673		LOC105371703	-	uncharacterized LOC105371703	ncRNA
4039	chr3	177802718	177802834	+	0	NA	Intergenic	Intergenic	268123	NR_110826	102724550	Hs.570526	NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
291	chr1	142537422	142538565	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	175612	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	ankyrin repeat domain 20 family member A12, pseudogene	pseudo
3071	chr2	68181771	68181780	+	0	NA	Intergenic	Intergenic	108384	NM_173177	10438	Hs.602900	NM_006333	ENSG00000197223	C1D	LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D	C1D nuclear receptor corepressor	protein-coding
3703	chr21	38439321	38439550	+	0	NA	intron (NM_016430, intron 5 of 5)	AluSq2|SINE|Alu	-3069	NR_131189	105372795	Hs.528019	NR_131189		LOC105372795	-	uncharacterized LOC105372795	ncRNA
5714	chr8	94372698	94372828	+	0	NA	intron (NR_033858, intron 10 of 10)	intron (NR_033858, intron 10 of 10)	-193684	NM_001242668	389676	Hs.386711	NM_001242668		C8orf87	-	chromosome 8 open reading frame 87	protein-coding
114	chr1	48115950	48116080	+	0	NA	Intergenic	MER5C1|DNA|hAT-Charlie	-213026	NR_126355	102724077	Hs.159718	NR_126355		LINC01389	-	long intergenic non-protein coding RNA 1389	ncRNA
3272	chr2	157418508	157418614	+	0	NA	intron (NM_000408, intron 9 of 16)	intron (NM_000408, intron 9 of 16)	125661	NM_000408	2820	Hs.512382	NM_000408	ENSG00000115159	GPD2	GDH2|GPDM|mGPDH	glycerol-3-phosphate dehydrogenase 2	protein-coding
5384	chr7	107992052	107992202	+	0	NA	intron (NM_005010, intron 2 of 27)	MamGypLTR3|LTR|Gypsy	104714	NM_001193584	4897	Hs.21422	NM_005010	ENSG00000091129	NRCAM	-	neuronal cell adhesion molecule	protein-coding
1939	chr14	93352681	93352815	+	0	NA	Intergenic	Intergenic	21079	NR_135253	101929002	Hs.639356	NR_135253	ENSG00000258499	LOC101929002	-	uncharacterized LOC101929002	ncRNA
5778	chr8	110610745	110610972	+	0	NA	intron (NM_001099748, intron 4 of 7)	intron (NM_001099748, intron 4 of 7)	9433	NM_001330596	55638	Hs.390738	NM_017786	ENSG00000147642	SYBU	GOLSYN|OCSYN|SNPHL	syntabulin	protein-coding
4879	chr6	79890108	79890230	+	0	NA	Intergenic	Intergenic	-53222	NR_040671	100288198	Hs.586270	NR_040671	ENSG00000270362	HMGN3-AS1	-	HMGN3 antisense RNA 1	ncRNA
5054	chr6	142643764	142644712	+	0	NA	intron (NM_001032394, intron 2 of 24)	intron (NM_001032394, intron 2 of 24)	21182	NM_001032395	57211	Hs.743302	NM_020455	ENSG00000112414	ADGRG6	APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR	adhesion G protein-coupled receptor G6	protein-coding
4894	chr6	81237624	81237726	+	0	NA	Intergenic	Intergenic	421348	NM_001318975	594	Hs.654441	NM_000056	ENSG00000083123	BCKDHB	BCKDE1B|BCKDH E1-beta|E1B	branched chain keto acid dehydrogenase E1 subunit beta	protein-coding
73	chr1	33918415	33918669	+	0	NA	Intergenic	L1MA2|LINE|L1	-19690	NM_145238	7579	Hs.442705	NM_145238	ENSG00000121903	ZSCAN20	KOX29|ZFP-31|ZNF31|ZNF360	zinc finger and SCAN domain containing 20	protein-coding
6090	chr9_gl000199_random	33746	34225	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
5853	chr9	8095454	8095640	+	0	NA	Intergenic	Intergenic	-295741	NM_033428	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
5784	chr8	121874021	121874227	+	0	NA	Intergenic	L1PBa|LINE|L1	-49815	NM_021021	6641	Hs.46701	NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
5479	chr7	138310686	138310915	+	0	NA	intron (NM_001331192, intron 9 of 12)	intron (NM_001331192, intron 9 of 12)	38169	NM_001331192	136306	Hs.99414	NM_174959	ENSG00000157703	SVOPL	-	SVOP like	protein-coding
67	chr1	32393137	32393321	+	0	NA	intron (NM_080391, intron 1 of 5)	L2a|LINE|L2	-7970	NM_001195101	8073	Hs.470477	NM_003479	ENSG00000184007	PTP4A2	HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b	protein tyrosine phosphatase type IVA, member 2	protein-coding
3335	chr2	191333550	191333812	+	0	NA	intron (NM_017694, intron 3 of 7)	intron (NM_017694, intron 3 of 7)	60600	NM_017694	54842	Hs.418581	NM_017694	ENSG00000151690	MFSD6	MMR2|hMMR2	major facilitator superfamily domain containing 6	protein-coding
3636	chr21	10838880	10839130	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	151938	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
241	chr1	110679774	110680040	+	0	NA	Intergenic	Intergenic	-13229	NM_001010898	388662	Hs.128382	NM_001010898	ENSG00000197106	SLC6A17	MRT48|NTT4	solute carrier family 6 member 17	protein-coding
2561	chr18	3595924	3595991	+	0	NA	intron (NR_024101, intron 2 of 2)	intron (NR_024101, intron 2 of 2)	1845	NR_024101	649446	Hs.19872	NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
3133	chr2	89879737	89879777	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	767873	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
6007	chr9	97205359	97205557	+	0	NA	intron (NM_032558, intron 5 of 11)	MIRb|SINE|MIR	68625	NM_032558	84641	Hs.555996	NM_032558	ENSG00000148110	MFSD14B	HIATL1	major facilitator superfamily domain containing 14B	protein-coding
6112	chrUn_gl000212	42028	42041	+	0	NA	intron (NR_027278, intron 1 of 7)	HSATI|Satellite|Satellite	17985	NR_027278	26080	Hs.448583	NR_027278	ENSG00000279516	FAM230C	LINC00281|NCRNA00281	family with sequence similarity 230 member C	ncRNA
327	chr1	151253900	151253951	+	0	NA	promoter-TSS (NM_001304763)	promoter-TSS (NM_001304763)	-106	NM_001304764	57592	Hs.186756	NM_020832	ENSG00000143373	ZNF687	PDB6	zinc finger protein 687	protein-coding
4697	chr6	20892797	20892888	+	0	NA	intron (NM_017774, intron 9 of 15)	intron (NM_017774, intron 9 of 15)	358154	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
1970	chr14	100288185	100288323	+	0	NA	intron (NM_001008707, intron 1 of 22)	intron (NM_001008707, intron 1 of 22)	28509	NM_001008707	2009	Hs.12451	NM_004434	ENSG00000066629	EML1	BH|ELP79|EMAP|EMAPL|HuEMAP	echinoderm microtubule associated protein like 1	protein-coding
4125	chr4	40664654	40665175	+	0	NA	Intergenic	MER63B|DNA|hAT-Blackjack	-33031	NM_001098634	54502	Hs.518727	NM_019027	ENSG00000163694	RBM47	NET18	RNA binding motif protein 47	protein-coding
2391	chr16	84172708	84172783	+	0	NA	intron (NM_031463, intron 1 of 5)	intron (NM_031463, intron 1 of 5)	6055	NM_031463	83693	Hs.555992	NM_031463	ENSG00000103160	HSDL1	SDR12C3	hydroxysteroid dehydrogenase like 1	protein-coding
4559	chr5	134820430	134820753	+	0	NA	Intergenic	Intergenic	-32502	NM_001099221	497189	Hs.552091	NM_001099221	ENSG00000255833	TIFAB	-	TIFA inhibitor	protein-coding
1281	chr12	101961431	101961740	+	0	NA	Intergenic	Intergenic	-27124	NM_001254721	4604	Hs.654589	NM_002465	ENSG00000196091	MYBPC1	LCCS4|MYBPCC|MYBPCS	myosin binding protein C, slow type	protein-coding
1864	chr14	79092479	79092636	+	0	NA	intron (NM_004796, intron 1 of 16)	intron (NM_004796, intron 1 of 16)	222483	NM_004796	9369	Hs.368307	NM_004796	ENSG00000021645	NRXN3	C14orf60	neurexin 3	protein-coding
3214	chr2	109815814	109816057	+	0	NA	intron (NM_001099289, intron 1 of 9)	(GAATG)n|Satellite|Satellite	-57891	NR_036223	100422863		NR_036223	ENSG00000264934	MIR4265	-	microRNA 4265	ncRNA
4554	chr5	133162593	133162761	+	0	NA	Intergenic	Intergenic	-86691	NR_131252	105664404	Hs.582536	NR_131252	ENSG00000249073	WSPAR	LncTCF7|TCONS_00009511	WNT signaling pathway activating non-coding RNA	ncRNA
4765	chr6	28092140	28092241	+	0	NA	promoter-TSS (NM_001320558)	promoter-TSS (NM_001320558)	-144	NM_001320558	80345	Hs.656641	NM_025231	ENSG00000196812	ZSCAN16	ZNF392|ZNF435|dJ265C24.3	zinc finger and SCAN domain containing 16	protein-coding
3675	chr21	36600123	36600285	+	0	NA	Intergenic	Intergenic	-178609	NM_001754	861	Hs.149261	NM_001754	ENSG00000159216	RUNX1	AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha	runt related transcription factor 1	protein-coding
6307	chrX	61733477	61733651	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	837654	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
3491	chr20	17321708	17321881	+	0	NA	intron (NM_002594, intron 2 of 11)	AluSz|SINE|Alu	114197	NM_002594	5126	Hs.315186	NM_002594	ENSG00000125851	PCSK2	NEC 2|NEC-2|NEC2|PC2|SPC2	proprotein convertase subtilisin/kexin type 2	protein-coding
1603	chr13	110699558	110699912	+	0	NA	Intergenic	Intergenic	-5897	NR_126387	104355146	Hs.508690	NR_126387	ENSG00000231428	LINC00396	-	long intergenic non-protein coding RNA 396	ncRNA
1881	chr14	82955497	82955647	+	0	NA	Intergenic	Intergenic	-866167	NR_110074	101928559	Hs.525499	NR_110074	ENSG00000258977	LINC01467	-	long intergenic non-protein coding RNA 1467	ncRNA
4403	chr5	6342509	6343254	+	0	NA	Intergenic	Intergenic	-5476	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	LINC02145	-	long intergenic non-protein coding RNA 2145	ncRNA
3952	chr3	127729792	127729988	+	0	NA	Intergenic	MER67C|LTR|ERV1	-41322	NM_013336	29927	Hs.518236	NM_013336	ENSG00000058262	SEC61A1	HNFJ4|HSEC61|SEC61|SEC61A	Sec61 translocon alpha 1 subunit	protein-coding
5833	chr9	2298896	2299027	+	0	NA	Intergenic	Arthur1A|DNA|hAT-Tip100	140505	NM_001289400	6595	Hs.298990	NM_003070	ENSG00000080503	SMARCA2	BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding
24	chr1	8498893	8499194	+	0	NA	intron (NM_012102, intron 12 of 23)	intron (NM_012102, intron 12 of 23)	14338	NR_125999	102724552	Hs.568612	NR_125999		LOC102724552	-	uncharacterized LOC102724552	ncRNA
2375	chr16	79320779	79320835	+	0	NA	Intergenic	Intergenic	313815	NM_005360	4094	Hs.134859	NM_005360	ENSG00000178573	MAF	AYGRP|CCA4|CTRCT21|c-MAF	MAF bZIP transcription factor	protein-coding
2759	chr18	55647637	55647689	+	0	NA	Intergenic	Intergenic	-63947	NM_015277	23327	Hs.185677	NM_015277	ENSG00000049759	NEDD4L	NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	protein-coding
2049	chr15	60651436	60651706	+	0	NA	intron (NM_001002857, intron 6 of 13)	intron (NM_001002857, intron 6 of 13)	38614	NM_004039	302	Hs.511605	NM_004039	ENSG00000182718	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
3321	chr2	176669309	176669455	+	0	NA	Intergenic	Intergenic	197691	NM_001305010	80856	Hs.209561	NM_030650	ENSG00000144320	LNPK	KIAA1715|LNP|LNP1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding
104	chr1	42805598	42805708	+	0	NA	Intergenic	Intergenic	-4105	NM_001198850	22887	Hs.26023	NM_014947	ENSG00000198815	FOXJ3	-	forkhead box J3	protein-coding
3197	chr2	99526228	99526232	+	0	NA	intron (NM_207362, intron 1 of 9)	intron (NM_207362, intron 1 of 9)	26454	NM_207362	343990	Hs.469398	NM_207362	ENSG00000196872	KIAA1211L	C2orf55	KIAA1211 like	protein-coding
4241	chr4	74988693	74988818	+	0	NA	Intergenic	Intergenic	-23758	NM_002089	2920	Hs.75765	NM_002089	ENSG00000081041	CXCL2	CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2	C-X-C motif chemokine ligand 2	protein-coding
1558	chr13	101142841	101143257	+	0	NA	intron (NM_001178004, intron 21 of 22)	MIR|SINE|MIR	-9780	NR_047686	100885777	Hs.662554	NR_047686		PCCA-AS1	-	PCCA antisense RNA 1	ncRNA
3370	chr2	211496035	211496181	+	0	NA	intron (NM_001122634, intron 11 of 27)	intron (NM_001122634, intron 11 of 27)	13813	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
5422	chr7	125417255	125417371	+	0	NA	Intergenic	Intergenic	-512968	NR_110183	101928254	Hs.571236	NR_110182	ENSG00000219445	LOC101928254	-	uncharacterized LOC101928254	ncRNA
5239	chr7	61742723	61742894	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1021626	NR_003952	643955	Hs.583308	NR_003952	ENSG00000185037	ZNF733P	ZNF733	zinc finger protein 733, pseudogene	pseudo
5794	chr8	125699436	125699724	+	0	NA	intron (NM_014751, intron 3 of 13)	intron (NM_014751, intron 3 of 13)	41168	NM_001282971	9788	Hs.336994	NM_014751	ENSG00000170873	MTSS1	MIM|MIMA|MIMB	MTSS1, I-BAR domain containing	protein-coding
3493	chr20	17322017	17322686	+	0	NA	intron (NM_002594, intron 2 of 11)	intron (NM_002594, intron 2 of 11)	114754	NM_002594	5126	Hs.315186	NM_002594	ENSG00000125851	PCSK2	NEC 2|NEC-2|NEC2|PC2|SPC2	proprotein convertase subtilisin/kexin type 2	protein-coding
5782	chr8	121873665	121873747	+	0	NA	Intergenic	L1PBa|LINE|L1	-49397	NM_021021	6641	Hs.46701	NM_021021	ENSG00000172164	SNTB1	59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43	syntrophin beta 1	protein-coding
4881	chr6	80094562	80094941	+	0	NA	Intergenic	MER68|LTR|ERVL	-71650	NR_130915	80078		NR_130915		LCAL1	onco-lncRNA-27	lung cancer associated lncRNA 1	ncRNA
4371	chr4	184492446	184492685	+	0	NA	Intergenic	Intergenic	65330	NM_001291959	3622	Hs.107153	NM_001564	ENSG00000168556	ING2	ING1L|p33ING2	inhibitor of growth family member 2	protein-coding
1513	chr13	93372229	93372402	+	0	NA	promoter-TSS (NR_049776)	promoter-TSS (NR_049776)	-88	NR_049775	100873969	Hs.577863	NR_046520	ENSG00000235984	GPC5-AS1	-	GPC5 antisense RNA 1	ncRNA
2175	chr16	12413339	12413506	+	0	NA	intron (NM_032167, intron 15 of 20)	intron (NM_032167, intron 15 of 20)	342831	NM_032167	92017	Hs.458401	NM_032167	ENSG00000048471	SNX29	A-388D4.1|RUNDC2A	sorting nexin 29	protein-coding
1264	chr12	97758390	97758713	+	0	NA	Intergenic	Intergenic	-100248	NR_024037	196475	Hs.652568	NR_024037	ENSG00000255794	RMST	LINC00054|NCRMS|NCRNA00054	rhabdomyosarcoma 2 associated transcript (non-protein coding)	ncRNA
4468	chr5	51433273	51433396	+	0	NA	Intergenic	Intergenic	-650440	NM_015946	53918	Hs.644352	NM_015946	ENSG00000152684	PELO	CGI-17|PRO1770	pelota homolog (Drosophila)	protein-coding
159	chr1	62392562	62392846	+	0	NA	intron (NM_176877, intron 26 of 42)	intron (NM_176877, intron 26 of 42)	-151754	NR_036058	100422902		NR_036058	ENSG00000263908	MIR3116-1	-	microRNA 3116-1	ncRNA
747	chr10	126382048	126382283	+	0	NA	intron (NM_014661, intron 3 of 4)	intron (NM_014661, intron 3 of 4)	-10432	NR_120631	101927944	Hs.437448	NR_120630		FAM53B-AS1	-	FAM53B antisense RNA 1	ncRNA
4905	chr6	83280131	83280330	+	0	NA	Intergenic	Intergenic	206269	NM_001166392	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
1633	chr14	20801525	20801719	+	0	NA	promoter-TSS (NM_182852)	promoter-TSS (NM_182852)	-151	NM_182849	57820	Hs.107003	NM_021178	ENSG00000100814	CCNB1IP1	C14orf18|HEI10	cyclin B1 interacting protein 1	protein-coding
47	chr1	16840882	16841066	+	0	NA	Intergenic	CpG	21173	NR_135764	100132147	Hs.645945	NR_135764	ENSG00000233421	LINC01783	-	long intergenic non-protein coding RNA 1783	ncRNA
5332	chr7	80552298	80552592	+	0	NA	Intergenic	Intergenic	-3778	NM_006379	10512	Hs.269109	NM_006379	ENSG00000075223	SEMA3C	SEMAE|SemE	semaphorin 3C	protein-coding
4540	chr5	125456791	125456879	+	0	NA	Intergenic	Intergenic	-58435	NR_105042	102546228	Hs.582529	NR_105042	ENSG00000248107	LINC02039	-	long intergenic non-protein coding RNA 2039	ncRNA
1942	chr14	96207317	96207368	+	0	NA	Intergenic	Intergenic	-26809	NR_049726	8115	Hs.2484	NM_021966	ENSG00000100721	TCL1A	TCL1	T-cell leukemia/lymphoma 1A	protein-coding
1427	chr13	22496150	22496301	+	0	NA	Intergenic	Intergenic	-43926	NR_047040	100874182	Hs.148951	NR_047040	ENSG00000226722	LINC00424	-	long intergenic non-protein coding RNA 424	ncRNA
4217	chr4	53731276	53731442	+	0	NA	intron (NM_023940, intron 3 of 3)	intron (NM_023940, intron 3 of 3)	2864	NM_023940	65997	Hs.8035	NM_023940	ENSG00000128045	RASL11B	-	RAS like family 11 member B	protein-coding
1484	chr13	50940719	50940762	+	0	NA	intron (NR_109974, intron 2 of 6)	intron (NR_109974, intron 2 of 6)	160845	NR_125753	103689915	Hs.722230	NR_125753	ENSG00000229323	DLEU1-AS1	LINC01308	DLEU1 antisense RNA 1	ncRNA
1017	chr11	115280561	115280729	+	0	NA	intron (NM_001098517, intron 1 of 8)	intron (NM_001098517, intron 1 of 8)	13171	NR_135102	105369507	Hs.664155	NR_135102	ENSG00000256315	LOC105369507	-	uncharacterized LOC105369507	ncRNA
3619	chr21	10807061	10807401	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	183712	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
6296	chrX	61720320	61721829	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	850144	NM_001012968	139886	Hs.612782	NM_001012968	ENSG00000186767	SPIN4	TDRD28	spindlin family member 4	protein-coding
2042	chr15	58756629	58756714	+	0	NA	intron (NR_120338, intron 2 of 2)	intron (NR_120338, intron 2 of 2)	32496	NM_000236	3990	Hs.654472	NM_000236	ENSG00000166035	LIPC	HDLCQ12|HL|HTGL|LIPH	lipase C, hepatic type	protein-coding
1057	chr11	126976064	126976531	+	0	NA	Intergenic	Intergenic	39400	NR_120578	101929473	Hs.737523	NR_120578	ENSG00000255087	LOC101929473	-	uncharacterized LOC101929473	ncRNA
5375	chr7	107657662	107657664	+	0	NA	Intergenic	Intergenic	-13859	NM_002291	3912	Hs.650585	NM_002291	ENSG00000091136	LAMB1	CLM|LIS5	laminin subunit beta 1	protein-coding
538	chr10	38776367	38776372	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	59295	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
3748	chr22	18878372	18878720	+	0	NA	intron (NR_136571, intron 1 of 11)	HSATI|Satellite|Satellite	3398	NR_136571	100996432	Hs.631668	NR_136571		LINC01663	-	long intergenic non-protein coding RNA 1663	ncRNA
5897	chr9	66823901	66824190	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-98922	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
4711	chr6	21264202	21264296	+	0	NA	Intergenic	Intergenic	247874	NR_103790	100874531	Hs.112750	NR_103790	ENSG00000280989	LINC00581	linc-MBOAT1-4	long intergenic non-protein coding RNA 581	ncRNA
521	chr10	1016159	1016425	+	0	NA	Intergenic	L3|LINE|CR1	-18057	NM_012341	23560	Hs.215766	NM_012341	ENSG00000107937	GTPBP4	CRFG|NGB|NOG1	GTP binding protein 4	protein-coding
5815	chr8	141223569	141223759	+	0	NA	intron (NM_031466, intron 17 of 22)	L1M5|LINE|L1	-113030	NR_144431	359809	Hs.26814	NR_144431		PEG13	-	paternally expressed 13	ncRNA
1923	chr14	89792974	89793449	+	0	NA	intron (NM_001085471, intron 3 of 6)	intron (NM_001085471, intron 3 of 6)	90243	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
162	chr1	62850443	62850571	+	0	NA	Intergenic	Intergenic	-51468	NM_001017415	7398	Hs.35086	NM_003368	ENSG00000162607	USP1	UBP	ubiquitin specific peptidase 1	protein-coding
433	chr1	208377056	208377062	+	0	NA	intron (NM_025179, intron 3 of 31)	MIRc|SINE|MIR	40606	NM_025179	5362	Hs.497626	NM_025179	ENSG00000076356	PLXNA2	OCT|PLXN2	plexin A2	protein-coding
880	chr11	51579949	51579972	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	64678	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
6095	chr9_gl000199_random	39601	39815	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
6353	chrY	13140930	13140990	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1392429	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3461	chr20	7684691	7684747	+	0	NA	Intergenic	Intergenic	236374	NM_017545	54363	Hs.193640	NM_017545	ENSG00000101323	HAO1	GOX|GOX1|HAOX1	hydroxyacid oxidase 1	protein-coding
1912	chr14	89633966	89634034	+	0	NA	intron (NM_001085471, intron 6 of 6)	L1ME3D|LINE|L1	249454	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
2164	chr16	8814428	8814667	+	0	NA	promoter-TSS (NM_001127448)	promoter-TSS (NM_001127448)	-26	NM_001127448	18	Hs.336768	NM_000663	ENSG00000183044	ABAT	GABA-AT|GABAT|NPD009	4-aminobutyrate aminotransferase	protein-coding
786	chr11	15241846	15241900	+	0	NA	intron (NM_001278315, intron 6 of 12)	intron (NM_001278315, intron 6 of 12)	71225	NM_001278313	387755	Hs.591997	NM_001031853	ENSG00000188487	INSC	-	inscuteable homolog (Drosophila)	protein-coding
986	chr11	111180742	111180864	+	0	NA	Intergenic	Intergenic	-5030	NM_001302644	399948	Hs.729225	NM_207429		COLCA1	C11orf92|CASC12|LOH11CR1F	colorectal cancer associated 1	protein-coding
3293	chr2	161522756	161522822	+	0	NA	Intergenic	Intergenic	-172471	NM_002897	5937	Hs.470412	NM_002897	ENSG00000153250	RBMS1	C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1	RNA binding motif single stranded interacting protein 1	protein-coding
5396	chr7	111802070	111802143	+	0	NA	intron (NM_014705, intron 1 of 51)	intron (NM_014705, intron 1 of 51)	44356	NM_014705	9732	Hs.654652	NM_014705	ENSG00000128512	DOCK4	-	dedicator of cytokinesis 4	protein-coding
1008	chr11	114030742	114030826	+	0	NA	intron (NM_001018011, intron 3 of 6)	intron (NM_001018011, intron 3 of 6)	99496	NM_001018011	7704	Hs.591945	NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
4530	chr5	124744737	124744861	+	0	NA	Intergenic	Intergenic	-84155	NR_109887	101927460	Hs.407582	NR_109887	ENSG00000260192	LOC101927460	-	uncharacterized LOC101927460	ncRNA
4148	chr4	49128799	49129524	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	140502	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3022	chr2	51240553	51240807	+	0	NA	intron (NM_001330081, intron 2 of 5)	intron (NM_001330081, intron 2 of 5)	18994	NM_001330085	9378	Hs.637685	NM_004801	ENSG00000179915	NRXN1	Hs.22998|PTHSL2|SCZD17	neurexin 1	protein-coding
201	chr1	85691111	85691123	+	0	NA	Intergenic	Intergenic	-24389	NM_032184	84144	Hs.533853	NM_032184	ENSG00000097096	SYDE2	-	synapse defective Rho GTPase homolog 2	protein-coding
4082	chr4	918437	918584	+	0	NA	intron (NM_005255, intron 1 of 27)	MSTA|LTR|ERVL-MaLR	-7665	NM_001297427	84286	Hs.478936	NM_032326	ENSG00000127419	TMEM175	hTMEM175	transmembrane protein 175	protein-coding
4297	chr4	114031716	114032084	+	0	NA	intron (NM_001148, intron 1 of 45)	intron (NM_001148, intron 1 of 45)	3881	NR_031641	100302188		NR_031641	ENSG00000283193	MIR1243	MIRN1243|hsa-mir-1243	microRNA 1243	ncRNA
1401	chr12	128105388	128105437	+	0	NA	Intergenic	Intergenic	15600	NR_120451	101927637	Hs.170413	NR_120451	ENSG00000256022	LOC101927637	-	uncharacterized LOC101927637	ncRNA
719	chr10	98869034	98869277	+	0	NA	intron (NM_003061, intron 4 of 36)	intron (NM_003061, intron 4 of 36)	6642	NR_038330	100505540	Hs.568878	NR_038330	ENSG00000234855	SLIT1-AS1	-	SLIT1 antisense RNA 1	ncRNA
4645	chr6	6826152	6826191	+	0	NA	Intergenic	Intergenic	-203112	NR_026970	285780	Hs.655737	NM_173675	ENSG00000216863	LY86-AS1	LY86-AS|LY86AS	LY86 antisense RNA 1	ncRNA
4305	chr4	124339568	124339625	+	0	NA	Intergenic	Intergenic	18951	NM_005841	10252	Hs.744854	NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
1529	chr13	96182464	96182848	+	0	NA	intron (NR_046533, intron 1 of 3)	intron (NR_046533, intron 1 of 3)	3508	NR_046533	100874194	Hs.569229	NR_046533	ENSG00000223392	CLDN10-AS1	-	CLDN10 antisense RNA 1	ncRNA
5163	chr7	28396141	28396207	+	0	NA	intron (NM_182899, intron 1 of 9)	intron (NM_182899, intron 1 of 9)	-55970	NM_182898	9586	Hs.437075	NM_004904	ENSG00000146592	CREB5	CRE-BPA|CREB-5	cAMP responsive element binding protein 5	protein-coding
4289	chr4	109169291	109169488	+	0	NA	Intergenic	Intergenic	76113	NR_029373	641518	Hs.535760	NR_029373	ENSG00000232021	LEF1-AS1	LEF1NAT	LEF1 antisense RNA 1	ncRNA
902	chr11	51589544	51589579	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	74279	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
827	chr11	21745410	21745540	+	0	NA	Intergenic	Intergenic	-469247	NM_213599	203859	Hs.154329	NM_213599	ENSG00000171714	ANO5	GDD1|LGMD2L|TMEM16E	anoctamin 5	protein-coding
266	chr1	121351649	121351677	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	90753	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
1742	chr14	59272431	59272692	+	0	NA	Intergenic	Intergenic	-22445	NR_110547	102723742	Hs.232734	NR_110547	ENSG00000258583	LINC01500	-	long intergenic non-protein coding RNA 1500	ncRNA
1353	chr12	116561472	116561554	+	0	NA	intron (NM_015335, intron 2 of 30)	intron (NM_015335, intron 2 of 30)	24946	NR_030351	693205		NR_030351	ENSG00000207967	MIR620	MIRN620|hsa-mir-620	microRNA 620	ncRNA
3128	chr2	89874164	89876178	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	763287	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
2585	chr18	18510913	18512556	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	180078	NM_005406	6093	Hs.306307	NM_005406	ENSG00000067900	ROCK1	P160ROCK|ROCK-I	Rho associated coiled-coil containing protein kinase 1	protein-coding
4404	chr5	6343255	6343507	+	0	NA	Intergenic	Intergenic	-5976	NR_028351	401172	Hs.376760	NM_001001702	ENSG00000250490	LINC02145	-	long intergenic non-protein coding RNA 2145	ncRNA
1624	chr13	113871001	113871201	+	0	NA	intron (NM_001008895, intron 2 of 19)	intron (NM_001008895, intron 2 of 19)	7282	NM_001008895	8451	Hs.339735	NM_003589	ENSG00000139842	CUL4A	-	cullin 4A	protein-coding
4864	chr6	61913904	61914020	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-370046	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
4440	chr5	38540477	38540557	+	0	NA	intron (NM_002310, intron 1 of 19)	intron (NM_002310, intron 1 of 19)	16231	NM_001127671	3977	Hs.133421	NM_002310	ENSG00000113594	LIFR	CD118|LIF-R|SJS2|STWS|SWS	leukemia inhibitory factor receptor alpha	protein-coding
2892	chr2	3656974	3657199	+	0	NA	intron (NM_001255989, intron 1 of 3)	AluJb|SINE|Alu	3444	NM_001255989	78989	Hs.32603	NM_024027	ENSG00000118004	COLEC11	3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1	collectin subfamily member 11	protein-coding
1695	chr14	40459996	40460286	+	0	NA	Intergenic	Intergenic	-558437	NM_203301	254170	Hs.146632	NM_203301	ENSG00000165355	FBXO33	BMND12|Fbx33|c14_5247	F-box protein 33	protein-coding
97	chr1	40311057	40311065	+	0	NA	intron (NR_132413, intron 1 of 3)	intron (NR_132413, intron 1 of 3)	38122	NM_001312691	54802	Hs.356554	NM_017646	ENSG00000043514	TRIT1	GRO1|IPPT|IPT|IPTase|MOD5|hGRO1	tRNA isopentenyltransferase 1	protein-coding
2378	chr16	80201238	80201577	+	0	NA	intron (NR_120307, intron 2 of 5)	intron (NR_120307, intron 2 of 5)	372261	NR_104661	101928248	Hs.659802	NR_104660	ENSG00000260876	LINC01229	-	long intergenic non-protein coding RNA 1229	ncRNA
2983	chr2	39923321	39923632	+	0	NA	intron (NM_152390, intron 1 of 3)	intron (NM_152390, intron 1 of 3)	30441	NM_152390	130733	Hs.40808	NM_152390	ENSG00000152154	TMEM178A	TMEM178	transmembrane protein 178A	protein-coding
3645	chr21	10844304	10844390	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	146596	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
6086	chr9_gl000199_random	31642	31646	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
668	chr10	70356439	70356778	+	0	NA	intron (NM_030625, intron 2 of 11)	intron (NM_030625, intron 2 of 11)	36491	NM_030625	80312	Hs.258855	NM_030625	ENSG00000138336	TET1	CXXC6|LCX|MLL-TET1|TET1-MLL|bA119F7.1	tet methylcytosine dioxygenase 1	protein-coding
774	chr11	13002241	13002545	+	0	NA	non-coding (NR_038904, exon 2 of 2)	non-coding (NR_038904, exon 2 of 2)	8702	NR_038904	100506305	Hs.153408	NR_038904	ENSG00000251381	LINC00958	-	long intergenic non-protein coding RNA 958	ncRNA
5602	chr8	43093971	43094025	+	0	NA	Intergenic	SAR|Satellite|Satellite	-53587	NM_001002920	340441	Hs.531579	NM_001002920		POTEA	A26A1|CT104.3|POTE-8|POTE8	POTE ankyrin domain family member A	protein-coding
5101	chr6	170854464	170854743	+	0	NA	intron (NM_002793, intron 3 of 5)	intron (NM_002793, intron 3 of 5)	7814	NM_002793	5689	Hs.352768	NM_002793	ENSG00000008018	PSMB1	HC5|PMSB1|PSC5	proteasome subunit beta 1	protein-coding
4306	chr4	124339626	124339757	+	0	NA	Intergenic	Intergenic	19046	NM_005841	10252	Hs.744854	NM_005841	ENSG00000164056	SPRY1	hSPRY1	sprouty RTK signaling antagonist 1	protein-coding
5711	chr8	94372488	94372491	+	0	NA	intron (NR_033858, intron 10 of 10)	intron (NR_033858, intron 10 of 10)	-193410	NM_001242668	389676	Hs.386711	NM_001242668		C8orf87	-	chromosome 8 open reading frame 87	protein-coding
6224	chrUn_gl000225	127023	127187	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
910	chr11	51592276	51593485	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	77598	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
3463	chr20	7751208	7751464	+	0	NA	Intergenic	Intergenic	169757	NM_017545	54363	Hs.193640	NM_017545	ENSG00000101323	HAO1	GOX|GOX1|HAOX1	hydroxyacid oxidase 1	protein-coding
1341	chr12	114427169	114427351	+	0	NA	Intergenic	Intergenic	-23084	NM_001146699	9904	Hs.7482	NM_016196	ENSG00000122965	RBM19	-	RNA binding motif protein 19	protein-coding
693	chr10	78193065	78193299	+	0	NA	intron (NR_131178, intron 7 of 7)	intron (NR_131178, intron 7 of 7)	-454620	NR_120655	101929328	Hs.664552	NR_120655	ENSG00000236467	KCNMA1-AS1	-	KCNMA1 antisense RNA 1	ncRNA
2701	chr18	45131418	45131579	+	0	NA	Intergenic	Intergenic	224631	NR_039753	100616264		NR_039753	ENSG00000266582	MIR4527	-	microRNA 4527	ncRNA
4601	chr5	153866580	153866667	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-8799	NM_004821	9421	Hs.152531	NM_004821	ENSG00000113196	HAND1	Hxt|Thing1|bHLHa27|eHand	heart and neural crest derivatives expressed 1	protein-coding
5098	chr6	170139021	170139126	+	0	NA	Intergenic	Intergenic	12606	NR_138070	6991	Hs.733746	NM_174910	ENSG00000184786	TCTE3	TCTEX1D3	t-complex-associated-testis-expressed 3	protein-coding
4123	chr4	40336269	40336362	+	0	NA	Intergenic	Intergenic	-1031	NM_017581	55584	Hs.272278	NM_017581	ENSG00000174343	CHRNA9	HSA243342|NACHRA9	cholinergic receptor nicotinic alpha 9 subunit	protein-coding
2684	chr18	42432648	42433005	+	0	NA	intron (NM_001130110, intron 2 of 3)	intron (NM_001130110, intron 2 of 3)	117305	NR_036203	100422829		NR_036203	ENSG00000265957	MIR4319	-	microRNA 4319	ncRNA
4799	chr6	43894663	43894875	+	0	NA	intron (NR_024478, intron 1 of 1)	intron (NR_024478, intron 1 of 1)	36004	NR_024478	100132354	Hs.376232	NR_024478		LINC01512	HI-LNC77	long intergenic non-protein coding RNA 1512	ncRNA
3424	chr2	232112761	232113219	+	0	NA	intron (NM_001271466, intron 8 of 24)	intron (NM_001271466, intron 8 of 24)	42077	NM_001271466	80210	Hs.162411	NM_025139	ENSG00000135931	ARMC9	ARM|KU-MEL-1|NS21	armadillo repeat containing 9	protein-coding
6414	chrY	13811274	13811278	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	722113	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
893	chr11	51586104	51586153	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	70846	NM_001004703	119749	Hs.553564	NM_001004703	ENSG00000185926	OR4C46	-	olfactory receptor family 4 subfamily C member 46	protein-coding
2309	chr16	52504078	52504103	+	0	NA	intron (NM_001080430, intron 1 of 6)	intron (NM_001080430, intron 1 of 6)	76716	NM_001080430	27324	Hs.132574	NM_001080430	ENSG00000103460	TOX3	CAGF9|TNRC9	TOX high mobility group box family member 3	protein-coding
3979	chr3	155222503	155222507	+	0	NA	intron (NM_001130961, intron 11 of 23)	intron (NM_001130961, intron 11 of 23)	171600	NM_001130961	23007	Hs.567423	NM_014996	ENSG00000114805	PLCH1	PLCL3	phospholipase C eta 1	protein-coding
3959	chr3	130073597	130073711	+	0	NA	intron (NM_153264, intron 1 of 39)	intron (NM_153264, intron 1 of 39)	9295	NR_022012	256076	Hs.205403	NM_153264	ENSG00000172752	COL6A5	COL29A1|VWA4	collagen type VI alpha 5 chain	protein-coding
4348	chr4	154064421	154064615	+	0	NA	Intergenic	Intergenic	-9752	NM_001130067	23321	Hs.435711	NM_015271	ENSG00000109654	TRIM2	CMT2R|RNF86	tripartite motif containing 2	protein-coding
4414	chr5	7209996	7210020	+	0	NA	Intergenic	Intergenic	59459	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
5065	chr6	153467019	153467180	+	0	NA	Intergenic	L1PBa|LINE|L1	-14710	NM_012419	26575	Hs.166313	NM_012419	ENSG00000091844	RGS17	RGS-17|RGSZ2|hRGS17	regulator of G-protein signaling 17	protein-coding
6047	chr9	119048887	119049006	+	0	NA	intron (NM_002581, intron 9 of 21)	intron (NM_002581, intron 9 of 21)	113939	NR_103711	493913	Hs.728832	NR_103711	ENSG00000256040	PAPPA-AS1	DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105	PAPPA antisense RNA 1	ncRNA
4859	chr6	61913262	61913281	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-370737	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
2558	chr18	3594162	3594373	+	0	NA	intron (NR_024101, intron 1 of 2)	intron (NR_024101, intron 1 of 2)	155	NR_024101	649446	Hs.19872	NM_001039796		DLGAP1-AS1	HsT914	DLGAP1 antisense RNA 1	ncRNA
5210	chr7	55195072	55195227	+	0	NA	intron (NM_001346900, intron 1 of 27)	intron (NM_001346900, intron 1 of 27)	17639	NM_001346900	1956	Hs.488293	NM_005228	ENSG00000146648	EGFR	ERBB|ERBB1|HER1|NISBD2|PIG61|mENA	epidermal growth factor receptor	protein-coding
5923	chr9	69710584	69710586	+	0	NA	intron (NR_135597, intron 4 of 4).2	ALR/Alpha|Satellite|centr	47199	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
4851	chr6	61911328	61911598	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-372545	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
1085	chr12	2431654	2431852	+	0	NA	intron (NM_001129830, intron 3 of 47)	MIRc|SINE|MIR	52811	NR_046769	100874370	Hs.653548	NR_046769		CACNA1C-IT3	-	CACNA1C intronic transcript 3	ncRNA
755	chr11	10401367	10401613	+	0	NA	intron (NR_103765, intron 2 of 3)	intron (NR_103765, intron 2 of 3)	-70378	NM_001172431	272	Hs.501890	NM_000480	ENSG00000133805	AMPD3	-	adenosine monophosphate deaminase 3	protein-coding
1714	chr14	51676212	51676543	+	0	NA	Intergenic	Intergenic	-30509	NM_030755	81542	Hs.125221	NM_030755	ENSG00000139921	TMX1	PDIA11|TMX|TXNDC|TXNDC1	thioredoxin related transmembrane protein 1	protein-coding
3942	chr3	124239933	124240369	+	0	NA	intron (NM_001024660, intron 33 of 59)	L2c|LINE|L2	-63355	NM_001322993	8997	Hs.8004	NM_003947	ENSG00000160145	KALRN	ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD	kalirin, RhoGEF kinase	protein-coding
1403	chr12	128105829	128105910	+	0	NA	Intergenic	MIR|SINE|MIR	15143	NR_120451	101927637	Hs.170413	NR_120451	ENSG00000256022	LOC101927637	-	uncharacterized LOC101927637	ncRNA
5394	chr7	111598352	111598501	+	0	NA	intron (NM_014705, intron 8 of 51)	intron (NM_014705, intron 8 of 51)	149865	NR_103806	100506413	Hs.677513	NR_103806	ENSG00000225572	DOCK4-AS1	-	DOCK4 antisense RNA 1	ncRNA
6448	chrY	13850613	13850635	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	682765	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
6409	chrY	13810806	13810949	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	722512	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
2268	chr16	35239592	35239598	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	258672	NR_033985	400533	Hs.499135	NR_033985	ENSG00000261122	FLJ26245	-	uncharacterized LOC400533	ncRNA
1497	chr13	73939470	73939831	+	0	NA	Intergenic	Intergenic	-198731	NR_047009	100874155	Hs.672679	NR_047009		LINC00392	-	long intergenic non-protein coding RNA 392	ncRNA
497	chr1	229357518	229357539	+	0	NA	Intergenic	Intergenic	-46980	NR_039659	100616234		NR_039659	ENSG00000283468	MIR4454	-	microRNA 4454	ncRNA
4236	chr4	74456150	74456513	+	0	NA	intron (NM_201431, intron 4 of 10)	LTR86A2|LTR|ERVL	29956	NM_177532	166824	Hs.529677	NM_177532	ENSG00000169435	RASSF6	-	Ras association domain family member 6	protein-coding
6379	chrY	13459771	13459832	+	0	NA	Intergenic	BSR/Beta|Satellite|Satellite	1073588	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
5746	chr8	102407964	102408132	+	0	NA	Intergenic	L2a|LINE|L2	26927	NR_002182	83955	Hs.567608	NM_032031	ENSG00000228224	NACAP1	FKSG17	nascent polypeptide associated complex alpha subunit pseudogene 1	pseudo
4615	chr5	171991143	171991761	+	0	NA	Intergenic	MIRb|SINE|MIR	-76817	NM_001308178	54492	Hs.91521	NM_001142651	ENSG00000214357	NEURL1B	NEURL3|hNeur2|neur2	neuralized E3 ubiquitin protein ligase 1B	protein-coding
411	chr1	204415420	204415548	+	0	NA	intron (NM_002646, intron 16 of 33)	MER5B|DNA|hAT-Charlie	-34539	NM_032833	84919	Hs.304376	NM_032833	ENSG00000158615	PPP1R15B	CREP|MSSGM2	protein phosphatase 1 regulatory subunit 15B	protein-coding
169	chr1	67008427	67008599	+	0	NA	intron (NM_032291, intron 1 of 24)	MIRc|SINE|MIR	8874	NM_032291	84251	Hs.132121	NM_032291	ENSG00000118473	SGIP1	-	SH3 domain GRB2 like endophilin interacting protein 1	protein-coding
6370	chrY	13458223	13458243	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1075156	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
2579	chr18	10020770	10020821	+	0	NA	Intergenic	Intergenic	106840	NM_003574	9218	Hs.165195	NM_003574	ENSG00000101558	VAPA	VAP-33|VAP-A|VAP33|hVAP-33	VAMP associated protein A	protein-coding
398	chr1	202934072	202934224	+	0	NA	intron (NM_016243, intron 5 of 8)	intron (NM_016243, intron 5 of 8)	2256	NM_016243	51706	Hs.334832	NM_016243	ENSG00000159348	CYB5R1	B5R.1|B5R1|B5R2|NQO3A2|humb5R2	cytochrome b5 reductase 1	protein-coding
2016	chr15	47624515	47624632	+	0	NA	intron (NM_001198999, intron 1 of 19)	intron (NM_001198999, intron 1 of 19)	148170	NM_001198999	80031	Hs.511265	NM_020858	ENSG00000137872	SEMA6D	-	semaphorin 6D	protein-coding
3182	chr2	92300452	92300473	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	171303	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
3934	chr3	123671431	123671464	+	0	NA	intron (NM_022757, intron 4 of 11)	intron (NM_022757, intron 4 of 11)	8808	NM_022757	64770	Hs.645028	NM_022757	ENSG00000175455	CCDC14	-	coiled-coil domain containing 14	protein-coding
942	chr11	72020118	72020261	+	0	NA	intron (NM_030813, intron 8 of 16)	intron (NM_030813, intron 8 of 16)	-64969	NM_005169	401	Hs.731115	NM_005169	ENSG00000165462	PHOX2A	ARIX|CFEOM2|FEOM2|NCAM2|PMX2A	paired like homeobox 2a	protein-coding
955	chr11	74361967	74362253	+	0	NA	Intergenic	L2a|LINE|L2	58460	NR_046410	10714	Hs.82502	NM_006591	ENSG00000077514	POLD3	P66|P68|PPP1R128	DNA polymerase delta 3, accessory subunit	protein-coding
1376	chr12	118975665	118975919	+	0	NA	Intergenic	Intergenic	161434	NM_022491	64426	Hs.416630	NM_022491	ENSG00000111707	SUDS3	SAP45|SDS3	SDS3 homolog, SIN3A corepressor complex component	protein-coding
1888	chr14	85320703	85320943	+	0	NA	Intergenic	Intergenic	-532796	NR_135155	105370605		NR_135155	ENSG00000258814	LOC105370605	-	uncharacterized LOC105370605	ncRNA
3267	chr2	149822317	149822801	+	0	NA	intron (NM_004522, intron 11 of 25)	intron (NM_004522, intron 11 of 25)	18215	NR_111932	3800	Hs.435557	NM_004522	ENSG00000168280	KIF5C	CDCBM2|KINN|NKHC|NKHC-2|NKHC2	kinesin family member 5C	protein-coding
6270	chrX	39828571	39828597	+	0	NA	Intergenic	Intergenic	128135	NM_017745	54880	Hs.659681	NM_017745	ENSG00000183337	BCOR	ANOP2|MAA2|MCOPS2	BCL6 corepressor	protein-coding
4119	chr4	25930649	25930909	+	0	NA	exon (NM_001145432, exon 3 of 3)	exon (NM_001145432, exon 3 of 3)	14965	NM_001145432	389203	Hs.479386	NM_001145432	ENSG00000250317	SMIM20	C4orf52|MITRAC7	small integral membrane protein 20	protein-coding
2369	chr16	78218290	78218452	+	0	NA	intron (NM_001291997, intron 4 of 7)	intron (NM_001291997, intron 4 of 7)	85061	NM_001291997	51741	Hs.461453	NM_016373	ENSG00000186153	WWOX	D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1	WW domain containing oxidoreductase	protein-coding
2647	chr18	33655943	33656032	+	0	NA	Intergenic	Tigger3b|DNA|TcMar-Tigger	-8430	NM_001303413	55197	Hs.464912	NM_018170	ENSG00000141425	RPRD1A	HsT3101|P15RS	regulation of nuclear pre-mRNA domain containing 1A	protein-coding
190	chr1	82691789	82691873	+	0	NA	Intergenic	Intergenic	425749	NM_012302	23266	Hs.24212	NM_012302	ENSG00000117114	ADGRL2	CIRL2|CL2|LEC1|LPHH1|LPHN2	adhesion G protein-coupled receptor L2	protein-coding
2816	chr19	7179621	7179750	+	0	NA	intron (NM_001079817, intron 3 of 20)	MER58A|DNA|hAT-Charlie	110214	NM_001044388	79230	Hs.591380	NM_024341	ENSG00000130544	ZNF557	-	zinc finger protein 557	protein-coding
1808	chr14	70102447	70102777	+	0	NA	intron (NM_014734, intron 1 of 5)	intron (NM_014734, intron 1 of 5)	24302	NM_014734	9766	Hs.440025	NM_014734	ENSG00000100647	SUSD6	DRAGO|KIAA0247	sushi domain containing 6	protein-coding
1739	chr14	59165071	59165240	+	0	NA	Intergenic	Intergenic	59600	NR_046095	51339	Hs.48950	NM_016651	ENSG00000165617	DACT1	DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3	dishevelled binding antagonist of beta catenin 1	protein-coding
601	chr10	39107487	39107519	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	117776	NR_045000	399746	Hs.742607	NR_045000		ACTR3BP5	FKSG74	ACTR3B pseudogene 5	pseudo
822	chr11	20948727	20949109	+	0	NA	exon (NM_001288713, exon 9 of 21)	exon (NM_001288713, exon 9 of 21)	257821	NM_001288714	4745	Hs.657172	NM_006157	ENSG00000165973	NELL1	IDH3GL|NRP1	neural EGFL like 1	protein-coding
2802	chr19	2983740	2984029	+	0	NA	intron (NM_024760, intron 4 of 15)	L2a|LINE|L2	6348	NM_001143986	79816	Hs.334507	NM_024760	ENSG00000104953	TLE6	GRG6|PREMBL	transducin like enhancer of split 6	protein-coding
231	chr1	107766949	107767135	+	0	NA	intron (NM_001330665, intron 2 of 6)	intron (NM_001330665, intron 2 of 6)	76351	NM_001113228	22854	Hs.133046	NM_014917	ENSG00000162631	NTNG1	Lmnt1	netrin G1	protein-coding
6102	chr9_gl000199_random	45571	47149	+	0	NA	NA	ALR/Alpha|Satellite|centr	NA	NA								
4700	chr6	20893258	20893768	+	0	NA	intron (NM_017774, intron 9 of 15)	intron (NM_017774, intron 9 of 15)	358825	NM_017774	54901	Hs.657604	NM_017774	ENSG00000145996	CDKAL1	-	CDK5 regulatory subunit associated protein 1 like 1	protein-coding
551	chr10	38785648	38785692	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	68596	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
4720	chr6	21749098	21749250	+	0	NA	intron (NR_015410, intron 2 of 11)	intron (NR_015410, intron 2 of 11)	82499	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
5926	chr9	69711387	69711388	+	0	NA	intron (NR_135597, intron 4 of 4).2	intron (NR_135597, intron 4 of 4).2	46397	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
504	chr1	244402341	244402549	+	0	NA	Intergenic	AluSx1|SINE|Alu	-113492	NM_001276349	200159	Hs.442703	NM_001012970	ENSG00000173728	C1orf100	-	chromosome 1 open reading frame 100	protein-coding
3753	chr22	18880367	18880374	+	0	NA	intron (NR_136571, intron 1 of 11)	HSATI|Satellite|Satellite	1574	NR_136571	100996432	Hs.631668	NR_136571		LINC01663	-	long intergenic non-protein coding RNA 1663	ncRNA
2823	chr19	13137327	13137590	+	0	NA	intron (NM_001271043, intron 2 of 10)	intron (NM_001271043, intron 2 of 10)	2063	NM_001271043	4784	Hs.257970	NM_002501	ENSG00000008441	NFIX	CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2	nuclear factor I X	protein-coding
3894	chr3	105247095	105247251	+	0	NA	intron (NM_001243280, intron 3 of 14)	intron (NM_001243280, intron 3 of 14)	161616	NM_001243280	214	Hs.591293	NM_001627	ENSG00000170017	ALCAM	CD166|MEMD	activated leukocyte cell adhesion molecule	protein-coding
3177	chr2	92295297	92295495	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	166237	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
3387	chr2	221175478	221175555	+	0	NA	Intergenic	Intergenic	-404230	NR_036228	100422959		NR_036228	ENSG00000266518	MIR4268	-	microRNA 4268	ncRNA
4583	chr5	149317488	149317615	+	0	NA	intron (NM_000440, intron 1 of 21)	L2c|LINE|L2	-5011	NR_110534	644762	Hs.730366	NR_110534		LOC644762	-	mitochondrial fission factor pseudogene	pseudo
1966	chr14	99264043	99264414	+	0	NA	Intergenic	Intergenic	86278	NM_001346978	283598	Hs.448754	NM_182560	ENSG00000176605	C14orf177	-	chromosome 14 open reading frame 177	protein-coding
1665	chr14	31079986	31080434	+	0	NA	intron (NM_001308097, intron 11 of 13)	intron (NM_001308097, intron 11 of 13)	-11250	NM_001283033	23256	Hs.369168	NM_016106	ENSG00000092108	SCFD1	C14orf163|RA410|SLY1|SLY1P|STXBP1L2	sec1 family domain containing 1	protein-coding
1782	chr14	67944417	67945118	+	0	NA	intron (NM_182526, intron 2 of 2)	MLT1H|LTR|ERVL-MaLR	-36120	NR_049879	100847064		NR_049879	ENSG00000265993	MIR5694	-	microRNA 5694	ncRNA
5446	chr7	129913108	129913322	+	0	NA	intron (NM_001869, intron 5 of 10)	intron (NM_001869, intron 5 of 10)	6512	NM_001869	1358	Hs.490038	NM_001869	ENSG00000158516	CPA2	-	carboxypeptidase A2	protein-coding
3873	chr3	93801841	93801906	+	0	NA	intron (NM_022072, intron 2 of 5)	intron (NM_022072, intron 2 of 5)	-19806	NM_001195643	200895	Hs.718516	NM_176815	ENSG00000178700	DHFR2	DHFRL1|DHFRP4	dihydrofolate reductase 2	protein-coding
2698	chr18	43003587	43004080	+	0	NA	intron (NM_001242692, intron 1 of 20)	intron (NM_001242692, intron 1 of 20)	83168	NR_110899	101927980	Hs.591058	NR_110899		SLC14A2-AS1	-	SLC14A2 antisense RNA 1	ncRNA
2252	chr16	33974781	33974798	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-12286	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
5751	chr8	103136892	103137113	+	0	NA	promoter-TSS (NR_049859)	promoter-TSS (NR_049859)	133	NM_001040630	83988	Hs.492427	NM_032041	ENSG00000104490	NCALD	-	neurocalcin delta	protein-coding
2506	chr17	59286007	59286023	+	0	NA	intron (NM_001330413, intron 23 of 25)	intron (NM_001330413, intron 23 of 25)	159050	NR_136397	101927855	Hs.662123	NR_136397	ENSG00000267131	LOC101927855	-	uncharacterized LOC101927855	ncRNA
3403	chr2	224162537	224162651	+	0	NA	Intergenic	HERVL-int|LTR|ERVL	245946	NM_080671	23704	Hs.348522	NM_080671	ENSG00000152049	KCNE4	MIRP3	potassium voltage-gated channel subfamily E regulatory subunit 4	protein-coding
6231	chrUn_gl000225	130834	131206	+	0	NA	NA	BSR/Beta|Satellite|Satellite	NA	NA								
792	chr11	15765080	15765217	+	0	NA	Intergenic	Intergenic	99717	NM_001293172	102724957	Hs.512245	NM_001293172	ENSG00000254695	LOC102724957	-	uncharacterized LOC102724957	protein-coding
6461	chrY	13864646	13864659	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	668737	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
3122	chr2	89868917	89868952	+	0	NA	Intergenic	Intergenic	757050	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
1248	chr12	94221965	94222025	+	0	NA	intron (NM_001320100, intron 2 of 2)	L1ME1|LINE|L1	-90396	NR_110092	101928731	Hs.659971	NR_110092	ENSG00000258274	LOC101928731	-	uncharacterized LOC101928731	ncRNA
6368	chrY	13457316	13457647	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	1075908	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
4727	chr6	21847387	21847470	+	0	NA	intron (NR_015410, intron 4 of 11)	intron (NR_015410, intron 4 of 11)	180753	NR_015410	401237	Hs.712707	NR_015410	ENSG00000272168	CASC15	LINC00340	cancer susceptibility candidate 15 (non-protein coding)	ncRNA
5076	chr6	157113689	157113902	+	0	NA	intron (NM_020732, intron 1 of 19)	intron (NM_020732, intron 1 of 19)	-12930	NR_039676	100616154		NR_039676	ENSG00000271899	MIR4466	mir-4466	microRNA 4466	ncRNA
3368	chr2	211495590	211495985	+	0	NA	intron (NM_001122634, intron 11 of 27)	intron (NM_001122634, intron 11 of 27)	13492	NR_002763	29034	Hs.658398	NR_002763	ENSG00000280837	CPS1-IT1	CPS1-IT|CPS1IT|CPS1IT1|PRO0132	CPS1 intronic transcript 1	ncRNA
4205	chr4	49645444	49646348	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	657237	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
2401	chr17	1018220	1018401	+	0	NA	intron (NM_001322841, intron 2 of 22)	intron (NM_001322841, intron 2 of 22)	-5970	NM_001092	29	Hs.159306	NM_001092	ENSG00000159842	ABR	MDB	active BCR-related	protein-coding
3994	chr3	170805558	170805692	+	0	NA	intron (NM_001161560, intron 22 of 31)	Charlie7|DNA|hAT-Charlie	18923	NR_030295	693154		NR_030295	ENSG00000207963	MIR569	MIRN569|hsa-mir-569	microRNA 569	ncRNA
1516	chr13	93495563	93495738	+	0	NA	intron (NM_004466, intron 7 of 7)	intron (NM_004466, intron 7 of 7)	-121783	NR_046520	100873969	Hs.577863	NR_046520	ENSG00000235984	GPC5-AS1	-	GPC5 antisense RNA 1	ncRNA
3733	chr22	16850651	16850657	+	0	NA	Intergenic	HSATII|Satellite|Satellite	223046	NM_014406	150160	Hs.128342	NM_014406	ENSG00000198445	CCT8L2	CESK1	chaperonin containing TCP1 subunit 8 like 2	protein-coding
924	chr11	62608969	62609287	+	0	NA	Intergenic	U2|snRNA|snRNA	-1500	NM_018093	54663	Hs.654620	NM_018093	ENSG00000133316	WDR74	-	WD repeat domain 74	protein-coding
2053	chr15	60847486	60847639	+	0	NA	intron (NM_134261, intron 2 of 10)	intron (NM_134261, intron 2 of 10)	37145	NM_134262	6095	Hs.560343	NM_002943	ENSG00000069667	RORA	NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA	RAR related orphan receptor A	protein-coding
2462	chr17	34982559	34982683	+	0	NA	Intergenic	Intergenic	24596	NM_024864	79922	Hs.194864	NM_024864	ENSG00000278619	MRM1	-	mitochondrial rRNA methyltransferase 1	protein-coding
5010	chr6	110885281	110885427	+	0	NA	Intergenic	Intergenic	-87510	NM_033125	85413	Hs.520319	NM_033125	ENSG00000004809	SLC22A16	CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1	solute carrier family 22 member 16	protein-coding
4064	chr3	193441014	193441164	+	0	NA	Intergenic	Intergenic	-95968	NR_046634	100873941	Hs.679364	NR_046634	ENSG00000224855	OPA1-AS1	-	OPA1 antisense RNA 1	ncRNA
4775	chr6	33332528	33332807	+	0	NA	Intergenic	Intergenic	-26646	NM_002263	3833	Hs.436912	NM_002263	ENSG00000237649	KIFC1	HSET|KNSL2	kinesin family member C1	protein-coding
2301	chr16	51827379	51827687	+	0	NA	Intergenic	Intergenic	31103	NR_110916	101927364	Hs.133120	NR_110916	ENSG00000260057	LINC01571	-	long intergenic non-protein coding RNA 1571	ncRNA
4162	chr4	49138992	49139449	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	150561	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
2027	chr15	53951269	53951432	+	0	NA	intron (NR_102334, intron 14 of 19)	intron (NR_102334, intron 14 of 19)	100509	NM_182758	256764	Hs.122125	NM_182758	ENSG00000166415	WDR72	AI2A3	WD repeat domain 72	protein-coding
2481	chr17	46549228	46549883	+	0	NA	Intergenic	Intergenic	27360	NR_110804	101927166	Hs.149244	NR_110804		LOC101927166	-	uncharacterized LOC101927166	ncRNA
4904	chr6	83279901	83280130	+	0	NA	Intergenic	Intergenic	206054	NM_001166392	7162	Hs.71947	NM_006670	ENSG00000146242	TPBG	5T4|5T4AG|M6P1|WAIF1	trophoblast glycoprotein	protein-coding
172	chr1	68221445	68221596	+	0	NA	intron (NM_018841, intron 2 of 3)	intron (NM_018841, intron 2 of 3)	70660	NM_001924	1647	Hs.80409	NM_001924	ENSG00000116717	GADD45A	DDIT1|GADD45	growth arrest and DNA damage inducible alpha	protein-coding
5993	chr9	92932021	92932208	+	0	NA	Intergenic	Intergenic	-128333	NR_038882	286370	Hs.407589	NR_038882	ENSG00000227555	MIR4290HG	-	MIR4290 host gene	ncRNA
3922	chr3	117347715	117347733	+	0	NA	Intergenic	Intergenic	707446	NR_121607	100506724	Hs.125983	NR_121607	ENSG00000242385	LINC00901	LSAMP-AS4|TCONS_00005428	long intergenic non-protein coding RNA 901	ncRNA
4045	chr3	182208802	182208942	+	0	NA	Intergenic	Intergenic	-4722	NR_040105	401103	Hs.591304	NR_040105	ENSG00000241098	LINC01994	-	long intergenic non-protein coding RNA 1994	ncRNA
6332	chrX	131428485	131428695	+	0	NA	intron (NR_110410, intron 2 of 2)	intron (NR_110410, intron 2 of 2)	-75082	NM_001271187	57826	Hs.119889	NM_021183	ENSG00000123728	RAP2C	-	RAP2C, member of RAS oncogene family	protein-coding
5431	chr7	126218543	126218670	+	0	NA	intron (NM_001127323, intron 8 of 10)	intron (NM_001127323, intron 8 of 10)	479632	NR_030323	693177		NR_030323	ENSG00000207692	MIR592	MIRN592|hsa-mir-592|mir-592	microRNA 592	ncRNA
1366	chr12	117923644	117923664	+	0	NA	intron (NM_173598, intron 14 of 19)	intron (NM_173598, intron 14 of 19)	-124047	NM_001204218	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
4252	chr4	81228664	81228935	+	0	NA	Intergenic	Intergenic	-28075	NM_001206997	255119	Hs.527104	NM_152770	ENSG00000197826	C4orf22	-	chromosome 4 open reading frame 22	protein-coding
223	chr1	105534130	105534300	+	0	NA	Intergenic	Tigger2|DNA|TcMar-Tigger	627342	NR_125954	101928476	Hs.563856	NR_125954	ENSG00000230768	LINC01676	-	long intergenic non-protein coding RNA 1676	ncRNA
1255	chr12	97403816	97404088	+	0	NA	Intergenic	Intergenic	102708	NM_001135175	121441	Hs.270084	NM_152905	ENSG00000139350	NEDD1	GCP-WD|TUBGCP7	neural precursor cell expressed, developmentally down-regulated 1	protein-coding
1043	chr11	126000403	126000680	+	0	NA	Intergenic	Intergenic	-67354	NM_001243597	50937	Hs.38034	NM_016952	ENSG00000064309	CDON	CDO|CDON1|HPE11|ORCAM	cell adhesion associated, oncogene regulated	protein-coding
4999	chr6	108988377	108988549	+	0	NA	intron (NM_001455, intron 2 of 2)	intron (NM_001455, intron 2 of 2)	-84394	NR_033376	387111	Hs.520310	NR_033376	ENSG00000203801	LINC00222	C6orf181|NCRNA00222|dJ354J5.2	long intergenic non-protein coding RNA 222	ncRNA
6014	chr9	98031266	98031421	+	0	NA	intron (NM_000136, intron 1 of 14)	intron (NM_000136, intron 1 of 14)	48193	NM_001243743	2176	Hs.494529	NM_000136	ENSG00000158169	FANCC	FA3|FAC|FACC	Fanconi anemia complementation group C	protein-coding
2660	chr18	35567877	35568021	+	0	NA	Intergenic	Intergenic	330851	NR_036202	100422857		NR_036202	ENSG00000266530	MIR4318	-	microRNA 4318	ncRNA
4571	chr5	141695894	141696116	+	0	NA	intron (NM_001127496, intron 1 of 1)	intron (NM_001127496, intron 1 of 1)	1882	NR_131221	100642175	Hs.684549	NR_131221	ENSG00000281881	SPRY4-IT1	SPRIGHTLY	SPRY4 intronic transcript 1	ncRNA
1852	chr14	77670352	77670684	+	0	NA	intron (NM_020431, intron 1 of 23)	intron (NM_020431, intron 1 of 23)	22416	NM_020431	57156	Hs.22452	NM_020431	ENSG00000165548	TMEM63C	C14orf171|CSC1|hsCSC1	transmembrane protein 63C	protein-coding
5893	chr9	66823236	66823369	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-99665	NR_121570	101928381	Hs.708686	NR_121570		LOC101928381	-	uncharacterized LOC101928381	ncRNA
3548	chr20	29830007	29830055	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-15436	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
639	chr10	42596686	42600648	+	0	NA	Intergenic	HSATII|Satellite|Satellite	264826	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
3449	chr2	238634989	238635403	+	0	NA	intron (NM_001137550, intron 7 of 23)	MIRb|SINE|MIR	34389	NM_001137553	9208	Hs.471779	NM_004735	ENSG00000124831	LRRFIP1	FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP	LRR binding FLII interacting protein 1	protein-coding
5470	chr7	133214887	133215247	+	0	NA	intron (NM_021807, intron 9 of 17)	Tigger3a|DNA|TcMar-Tigger	239432	NR_106749	102465139		NR_106749	ENSG00000276137	MIR6133	hsa-mir-6133	microRNA 6133	ncRNA
1505	chr13	79640293	79640503	+	0	NA	Intergenic	Intergenic	-226213	NR_046869	100874126	Hs.577893	NR_046869		LINC00331	NCRNA00331	long intergenic non-protein coding RNA 331	ncRNA
2248	chr16	33973380	33973593	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-10983	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
6130	chrUn_gl000216	6365	6603	+	0	NA	NA	(CATTC)n|Satellite|Satellite	NA	NA								
4746	chr6	24284238	24284404	+	0	NA	intron (NM_016356, intron 6 of 9)	L2a|LINE|L2	-72810	NM_181337	353219	Hs.697888	NM_181337	ENSG00000146049	KAAG1	RU2AS	kidney associated antigen 1	protein-coding
4957	chr6	97488252	97488385	+	0	NA	intron (NM_001286254, intron 1 of 8)	intron (NM_001286254, intron 1 of 8)	30366	NM_001323261	114792	Hs.45056	NM_052904	ENSG00000186231	KLHL32	BKLHD5|KIAA1900|UG0030H05|dJ21F7.1	kelch like family member 32	protein-coding
4844	chr6	61901616	61901627	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	-382387	NM_001190706	100463487		NM_001190706		MTRNR2L9	HN9	MT-RNR2-like 9	protein-coding
2809	chr19	6087870	6088076	+	0	NA	intron (NM_134433, intron 1 of 16)	intron (NM_134433, intron 1 of 16)	22691	NM_000635	5990	Hs.465709	NM_000635	ENSG00000087903	RFX2	-	regulatory factor X2	protein-coding
5306	chr7	69229489	69229653	+	0	NA	intron (NM_015570, intron 1 of 18)	intron (NM_015570, intron 1 of 18)	165666	NM_001127231	26053	Hs.21631	NM_015570	ENSG00000158321	AUTS2	FBRSL2|MRD26	autism susceptibility candidate 2	protein-coding
1227	chr12	79395325	79395536	+	0	NA	intron (NM_001291901, intron 2 of 9)	intron (NM_001291901, intron 2 of 9)	-44003	NM_001135806	6857	Hs.310545	NM_005639	ENSG00000067715	SYT1	P65|SVP65|SYT	synaptotagmin 1	protein-coding
1417	chr12	130035393	130035598	+	0	NA	intron (NM_133448, intron 2 of 8)	MLT1G3|LTR|ERVL-MaLR	342349	NR_110058	101927735	Hs.569212	NR_110058	ENSG00000256699	LOC101927735	-	uncharacterized LOC101927735	ncRNA
216	chr1	89720926	89721244	+	0	NA	Intergenic	L1MA2|LINE|L1	17459	NM_052942	115362	Hs.513726	NM_052942	ENSG00000154451	GBP5	GBP-5	guanylate binding protein 5	protein-coding
3351	chr2	206637892	206638231	+	0	NA	intron (NM_201266, intron 15 of 16)	intron (NM_201266, intron 15 of 16)	90837	NM_201264	8828	Hs.471200	NM_003872	ENSG00000118257	NRP2	NP2|NPN2|PRO2714|VEGF165R2	neuropilin 2	protein-coding
3478	chr20	11830189	11830380	+	0	NA	intron (NR_110635, intron 1 of 1)	MER65C|LTR|ERV1	21079	NR_110635	728450	Hs.560990	NR_110635	ENSG00000228422	LINC00687	C20orf61|dJ1012F16.1	long intergenic non-protein coding RNA 687	ncRNA
5116	chr7	4752027	4752158	+	0	NA	intron (NM_001037165, intron 1 of 8)	intron (NM_001037165, intron 1 of 8)	30162	NM_001037165	221937	Hs.487393	NM_001037165	ENSG00000164916	FOXK1	FOXK1L	forkhead box K1	protein-coding
1951	chr14	96337915	96338141	+	0	NA	Intergenic	Intergenic	-4701	NR_132399	100507043	Hs.455955	NR_038861	ENSG00000250366	TUNAR	HI-LNC78|LINC00617|TUNA	TCL1 upstream neural differentiation-associated RNA	ncRNA
3600	chr21	10702145	10703185	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	288278	NM_001290224	7179	Hs.122986	NM_199259	ENSG00000274391	TPTE	CT44|PTEN2	transmembrane phosphatase with tensin homology	protein-coding
5326	chr7	79682060	79682402	+	0	NA	Intergenic	Intergenic	-81909	NM_002069	2770	Hs.134587	NM_002069	ENSG00000127955	GNAI1	Gi	G protein subunit alpha i1	protein-coding
2766	chr18	57043457	57043683	+	0	NA	Intergenic	Intergenic	-17062	NM_005570	3998	Hs.465295	NM_005570	ENSG00000074695	LMAN1	ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58	lectin, mannose binding 1	protein-coding
5526	chr7	158831860	158832139	+	0	NA	intron (NM_001304522, intron 4 of 10)	(CA)n|Simple_repeat|Simple_repeat	30954	NR_024394	154822	Hs.544783	NM_198345	ENSG00000231419	LINC00689	-	long intergenic non-protein coding RNA 689	ncRNA
4877	chr6	79889704	79889817	+	0	NA	Intergenic	Charlie19a|DNA|hAT-Charlie	-53631	NR_040671	100288198	Hs.586270	NR_040671	ENSG00000270362	HMGN3-AS1	-	HMGN3 antisense RNA 1	ncRNA
3661	chr21	11186370	11186373	+	0	NA	Intergenic	HSATI|Satellite|Satellite	-87434	NM_001187	574	Hs.545789	NM_001187		BAGE	BAGE1|CT2.1	B melanoma antigen	protein-coding
4032	chr3	177519906	177520049	+	0	NA	Intergenic	Intergenic	-14676	NR_110826	102724550	Hs.570526	NR_110826	ENSG00000231574	LINC02015	KCCAT211	long intergenic non-protein coding RNA 2015	ncRNA
2928	chr2	5549895	5550146	+	0	NA	Intergenic	Intergenic	281230	NR_110580	102723818	Hs.128107	NR_110580		LINC01248	-	long intergenic non-protein coding RNA 1248	ncRNA
1794	chr14	68578095	68578264	+	0	NA	intron (NM_001321809, intron 7 of 11)	intron (NM_001321809, intron 7 of 11)	287870	NM_001321815	5890	Hs.172587	NM_002877	ENSG00000182185	RAD51B	R51H2|RAD51L1|REC2	RAD51 paralog B	protein-coding
4755	chr6	24721078	24721578	+	0	NA	Intergenic	CpG	-1925	NM_030939	81688	Hs.744857	NM_030939	ENSG00000112308	C6orf62	Nbla00237|XTP12|dJ30M3.2	chromosome 6 open reading frame 62	protein-coding
2193	chr16	22000997	22001278	+	0	NA	intron (NM_173806, intron 1 of 2)	intron (NM_173806, intron 1 of 2)	11294	NM_173806	255762	Hs.98244	NM_173806	ENSG00000155714	PDZD9	C16orf65	PDZ domain containing 9	protein-coding
2636	chr18	31895755	31895913	+	0	NA	Intergenic	L2b|LINE|L2	-92319	NM_001198546	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
3522	chr20	29804508	29804601	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	-40913	NM_001037730	245929	Hs.580793	NM_001037730	ENSG00000215547	DEFB115	DEFB-15	defensin beta 115	protein-coding
676	chr10	72344885	72345193	+	0	NA	Intergenic	Intergenic	17492	NM_001083116	5551	Hs.2200	NM_005041	ENSG00000180644	PRF1	FLH2|HPLH2|P1|PFN1|PFP	perforin 1	protein-coding
277	chr1	121357497	121357716	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	96696	NR_003955	647121	Hs.697682	NR_003955	ENSG00000231752	EMBP1	-	embigin pseudogene 1	pseudo
3191	chr2	97611108	97611173	+	0	NA	intron (NM_001122646, intron 8 of 16)	intron (NM_001122646, intron 8 of 16)	26297	NR_110209	101927053	Hs.677537	NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
3306	chr2	172410384	172410690	+	0	NA	intron (NM_024843, intron 3 of 3)	MER51A|LTR|ERV1	31671	NM_001127383	79901	Hs.221941	NM_024843	ENSG00000071967	CYBRD1	CYB561A2|DCYTB|FRRS3	cytochrome b reductase 1	protein-coding
2640	chr18	31919360	31919601	+	0	NA	Intergenic	Intergenic	-115965	NM_001198546	8715	Hs.514795	NM_003787	ENSG00000101746	NOL4	CT125|HRIHFB2255|NOLP	nucleolar protein 4	protein-coding
2700	chr18	45131388	45131417	+	0	NA	Intergenic	Intergenic	224535	NR_039753	100616264		NR_039753	ENSG00000266582	MIR4527	-	microRNA 4527	ncRNA
1183	chr12	42313424	42313621	+	0	NA	Intergenic	Intergenic	155531	NR_135040	101927038	Hs.98588	NR_135040	ENSG00000257784	LOC101927038	-	uncharacterized LOC101927038	ncRNA
2747	chr18	55464752	55464820	+	0	NA	intron (NM_005603, intron 1 of 27)	intron (NM_005603, intron 1 of 27)	5541	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
4312	chr4	130316380	130316514	+	0	NA	Intergenic	Intergenic	299165	NM_001099783	132321	Hs.567679	NM_173487	ENSG00000151470	C4orf33	-	chromosome 4 open reading frame 33	protein-coding
2215	chr16	33865710	33865849	+	0	NA	Intergenic	(GAGTG)n|Simple_repeat|Simple_repeat	96724	NR_038368	649159	Hs.532675	NM_001040069	ENSG00000256642	LINC00273	NCRNA00273|TOP	long intergenic non-protein coding RNA 273	ncRNA
2671	chr18	37405670	37405789	+	0	NA	Intergenic	Intergenic	-73770	NR_024391	647946	Hs.649350	NR_024391	ENSG00000267374	MIR924HG	LINC00669	MIR924 host gene	ncRNA
123	chr1	48992359	48992397	+	0	NA	Intergenic	(TAG)n|Simple_repeat|Simple_repeat	-54498	NM_019073	54558	Hs.538103	NM_019073	ENSG00000132122	SPATA6	HASH|SRF-1|SRF1	spermatogenesis associated 6	protein-coding
304	chr1	145027733	145028610	+	0	NA	intron (NM_022359, intron 1 of 6)	intron (NM_022359, intron 1 of 6)	11792	NR_144517	100996724	Hs.682380	NR_144516		LOC100996724	-	phosphodiesterase 4D interacting protein-like	pseudo
5497	chr7	144803080	144803294	+	0	NA	Intergenic	Intergenic	-270041	NM_001042482	27010	Hs.660232	NM_022445	ENSG00000196511	TPK1	HTPK1|PP20|THMD5	thiamin pyrophosphokinase 1	protein-coding
2417	chr17	19091325	19091679	+	0	NA	Intergenic	U3|snRNA|snRNA	-25565	NM_001291904	79999	Hs.677375	NM_024934	ENSG00000197665	LOC79999	-	uncharacterized LOC79999	protein-coding
5828	chr9	935358	935520	+	0	NA	intron (NM_021951, intron 4 of 4)	intron (NM_021951, intron 4 of 4)	-41529	NM_021240	58524	Hs.189174	NM_021240	ENSG00000064218	DMRT3	DMRTA3	doublesex and mab-3 related transcription factor 3	protein-coding
1631	chr14	20801362	20801414	+	0	NA	promoter-TSS (NM_182852)	promoter-TSS (NM_182852)	83	NM_021178	57820	Hs.107003	NM_021178	ENSG00000100814	CCNB1IP1	C14orf18|HEI10	cyclin B1 interacting protein 1	protein-coding
2294	chr16	51768003	51768212	+	0	NA	Intergenic	Intergenic	-28323	NR_110916	101927364	Hs.133120	NR_110916	ENSG00000260057	LINC01571	-	long intergenic non-protein coding RNA 1571	ncRNA
1369	chr12	117932539	117932805	+	0	NA	intron (NM_173598, intron 14 of 19)	L2a|LINE|L2	-133065	NM_001204218	4842	Hs.654410	NM_000620	ENSG00000089250	NOS1	IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS	nitric oxide synthase 1	protein-coding
1151	chr12	34841353	34841380	+	0	NA	Intergenic	ALR/Alpha|Satellite|centr	666150	NM_032834	84920	Hs.102971	NM_032834	ENSG00000139133	ALG10	ALG10A|DIE2|KCR1	ALG10, alpha-1,2-glucosyltransferase	protein-coding
54	chr1	27998526	27998790	+	0	NA	promoter-TSS (NM_022873)	promoter-TSS (NM_022873)	66	NM_022872	2537	Hs.523847	NM_002038	ENSG00000126709	IFI6	6-16|FAM14C|G1P3|IFI-6-16|IFI616	interferon alpha inducible protein 6	protein-coding
3347	chr2	205130597	205130744	+	0	NA	Intergenic	Intergenic	-279846	NM_152526	117583	Hs.657382	NM_057177	ENSG00000116117	PARD3B	ALS2CR19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
1204	chr12	67436531	67436601	+	0	NA	Intergenic	Intergenic	53498	NR_120490	102724421	Hs.135774	NR_120490	ENSG00000257083	LOC102724421	-	uncharacterized LOC102724421	ncRNA
839	chr11	31376751	31377103	+	0	NA	intron (NM_181807, intron 1 of 8)	intron (NM_181807, intron 1 of 8)	14430	NM_181807	341019	Hs.127405	NM_181807	ENSG00000170959	DCDC1	-	doublecortin domain containing 1	protein-coding
2520	chr17	65581372	65581553	+	0	NA	intron (NM_181671, intron 5 of 9)	intron (NM_181671, intron 5 of 9)	-113761	NR_030385	693131		NR_030385	ENSG00000263690	MIR548D2	MIRN548D2	microRNA 548d-2	ncRNA
88	chr1	38617015	38617088	+	0	NA	Intergenic	Intergenic	62148	NR_037432	100500801		NR_037432	ENSG00000265596	MIR3659	mir-3659	microRNA 3659	ncRNA
5175	chr7	29371858	29372036	+	0	NA	intron (NM_001293070, intron 2 of 13)	MIR|SINE|MIR	-123361	NR_120522	102724484	Hs.638665	NR_120522		LOC102724484	-	uncharacterized LOC102724484	ncRNA
1009	chr11	114030827	114030953	+	0	NA	intron (NM_001018011, intron 3 of 6)	intron (NM_001018011, intron 3 of 6)	99602	NM_001018011	7704	Hs.591945	NM_006006	ENSG00000109906	ZBTB16	PLZF|ZNF145	zinc finger and BTB domain containing 16	protein-coding
4825	chr6	52362777	52362860	+	0	NA	3' UTR (NM_012288, exon 11 of 11)	3' UTR (NM_012288, exon 11 of 11)	77013	NM_001172420	114327	Hs.403171	NM_018100	ENSG00000096093	EFHC1	EJM1|dJ304B14.2	EF-hand domain containing 1	protein-coding
403	chr1	203620742	203621048	+	0	NA	intron (NM_001684, intron 1 of 20)	intron (NM_001684, intron 1 of 20)	24980	NM_001684	493	Hs.343522	NM_001684	ENSG00000058668	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase plasma membrane Ca2+ transporting 4	protein-coding
5844	chr9	7777560	7777662	+	0	NA	Intergenic	Intergenic	22195	NM_001318058	90871	Hs.7517	NM_033428	ENSG00000137038	TMEM261	C9orf123	transmembrane protein 261	protein-coding
5278	chr7	64954650	64954804	+	0	NA	Intergenic	(CATTC)n|Simple_repeat|Simple_repeat	116015	NM_007139	168374	Hs.9521	NM_007139	ENSG00000146757	ZNF92	HEL-203|HPF12|HTF12|TF12	zinc finger protein 92	protein-coding
3438	chr2	236877224	236877291	+	0	NA	exon (NM_014914, exon 12 of 17)	exon (NM_014914, exon 12 of 17)	199395	NM_001485	2637	Hs.184945	NM_001485	ENSG00000168505	GBX2	-	gastrulation brain homeobox 2	protein-coding
1829	chr14	74606725	74607123	+	0	NA	intron (NM_001024674, intron 5 of 5)	intron (NM_001024674, intron 5 of 5)	55268	NM_001024674	91750	Hs.612866	NM_001024674	ENSG00000205659	LIN52	C14orf46|c14_5549	lin-52 DREAM MuvB core complex component	protein-coding
5803	chr8	134966430	134966724	+	0	NA	Intergenic	Intergenic	67838	NR_125424	101927822	Hs.129114	NR_125424	ENSG00000253593	LOC101927822	-	uncharacterized LOC101927822	ncRNA
3698	chr21	38432684	38432867	+	0	NA	Intergenic	L1P3b|LINE|L1	3591	NR_131189	105372795	Hs.528019	NR_131189		LOC105372795	-	uncharacterized LOC105372795	ncRNA
5876	chr9	14165474	14165677	+	0	NA	intron (NM_001190737, intron 3 of 10)	L1MC4|LINE|L1	15226	NM_001282787	4781	Hs.644095	NM_005596	ENSG00000147862	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I B	protein-coding
1629	chr13	114915504	114915810	+	0	NA	Intergenic	Intergenic	-17559	NM_007368	22821	Hs.593075	NM_007368	ENSG00000185989	RASA3	GAP1IP4BP|GAPIII	RAS p21 protein activator 3	protein-coding
1918	chr14	89769733	89770221	+	0	NA	intron (NM_001085471, intron 3 of 6)	intron (NM_001085471, intron 3 of 6)	113477	NM_005197	1112	Hs.434286	NM_005197	ENSG00000053254	FOXN3	C14orf116|CHES1|PRO1635	forkhead box N3	protein-coding
2755	chr18	55566284	55566503	+	0	NA	Intergenic	Intergenic	-96066	NM_005603	5205	Hs.216623	NM_005603	ENSG00000081923	ATP8B1	ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1	ATPase phospholipid transporting 8B1	protein-coding
4197	chr4	49638674	49638829	+	0	NA	Intergenic	(GAATG)n|Satellite|Satellite	650092	NM_001286791	80157	Hs.479703	NM_025087	ENSG00000109182	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog	protein-coding
3237	chr2	132996454	132996484	+	0	NA	intron (NR_027020, intron 1 of 4)	ALR/Alpha|Satellite|centr	18184	NR_031608	100313824		NR_031608	ENSG00000221288	MIR663B	MIRN663B|mir-663b	microRNA 663b	ncRNA
4487	chr5	73502395	73502475	+	0	NA	Intergenic	Intergenic	101715	NR_105009	102503429	Hs.519391	NR_105009	ENSG00000248942	LINC01335	-	long intergenic non-protein coding RNA 1335	ncRNA
3150	chr2	90374564	90375025	+	0	NA	Intergenic	HSATII|Satellite|Satellite	1262910	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
4678	chr6	19535760	19536044	+	0	NA	Intergenic	Intergenic	85850	NR_134615	105374960	Hs.519913	NR_134615		LOC105374960	-	uncharacterized LOC105374960	ncRNA
703	chr10	80319624	80319889	+	0	NA	Intergenic	Intergenic	292671	NR_073447	414243	Hs.55047	NR_073447	ENSG00000230417	LINC00595	C10orf101	long intergenic non-protein coding RNA 595	ncRNA
2729	chr18	50319024	50319087	+	0	NA	intron (NM_005215, intron 2 of 28)	HUERS-P3b-int|LTR|ERV1	-444416	NR_130465	100616232		NR_130465	ENSG00000263872	MIR4528	-	microRNA 4528	ncRNA
3164	chr2	92268975	92270110	+	0	NA	Intergenic	HSATII|Satellite|Satellite	140383	NR_027714	440888	Hs.730239	NM_001032412		ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
5575	chr8	27686746	27686950	+	0	NA	intron (NM_018492, intron 2 of 7)	L1MEc|LINE|L1	8764	NM_018492	55872	Hs.104741	NM_018492	ENSG00000168078	PBK	CT84|HEL164|Nori-3|SPK|TOPK	PDZ binding kinase	protein-coding
6053	chr9	124106928	124107170	+	0	NA	intron (NM_198194, intron 2 of 2)	Tigger11a|DNA|TcMar-Tigger	25533	NR_073037	2040	Hs.253903	NM_004099	ENSG00000148175	STOM	BND7|EPB7|EPB72	stomatin	protein-coding
4366	chr4	166381693	166381931	+	0	NA	intron (NM_001873, intron 1 of 8)	intron (NM_001873, intron 1 of 8)	74418	NR_030304	693163		NR_030304	ENSG00000207559	MIR578	MIRN578|hsa-mir-578	microRNA 578	ncRNA
3454	chr20	4856116	4856392	+	0	NA	intron (NM_203327, intron 9 of 16)	intron (NM_203327, intron 9 of 16)	-51963	NM_014737	9770	Hs.631504	NM_014737	ENSG00000101265	RASSF2	CENP-34|RASFADIN	Ras association domain family member 2	protein-coding
4382	chr5	302280	303167	+	0	NA	intron (NM_001267557, intron 2 of 3)	intron (NM_001267557, intron 2 of 3)	-1568	NM_020731	57491	Hs.50823	NM_020731	ENSG00000063438	AHRR	AHH|AHHR|bHLHe77	aryl-hydrocarbon receptor repressor	protein-coding
3304	chr2	169588876	169588949	+	0	NA	intron (NM_203463, intron 8 of 9)	intron (NM_203463, intron 8 of 9)	54027	NR_045787	100861402	Hs.506829	NR_045786	ENSG00000227617	CERS6-AS1	-	CERS6 antisense RNA 1	ncRNA
2885	chr2	1859031	1859255	+	0	NA	intron (NM_001329845, intron 18 of 24)	intron (NM_001329845, intron 18 of 24)	-110824	NM_012293	7837	Hs.332197	NM_012293	ENSG00000130508	PXDN	COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO	peroxidasin	protein-coding
1461	chr13	37478589	37478718	+	0	NA	intron (NM_005905, intron 1 of 5)	intron (NM_005905, intron 1 of 5)	15756	NM_001127217	4093	Hs.123119	NM_005905	ENSG00000120693	SMAD9	MADH6|MADH9|PPH2|SMAD8|SMAD8/9|SMAD8A|SMAD8B	SMAD family member 9	protein-coding
2488	chr17	55110717	55110883	+	0	NA	Intergenic	Intergenic	-12039	NR_002818	376412	Hs.132299	NR_002818	ENSG00000261192	RNF126P1	-	ring finger protein 126 pseudogene 1	pseudo
3106	chr2	89853603	89853631	+	0	NA	Intergenic	(CATTC)n|Satellite|Satellite	741733	NR_039635	100616399		NR_039635	ENSG00000265510	MIR4436A	mir-4436a	microRNA 4436a	ncRNA
2487	chr17	55110205	55110716	+	0	NA	Intergenic	AluSq|SINE|Alu	-12379	NR_002818	376412	Hs.132299	NR_002818	ENSG00000261192	RNF126P1	-	ring finger protein 126 pseudogene 1	pseudo
3188	chr2	97600886	97601248	+	0	NA	intron (NM_001122646, intron 8 of 16)	MLT1J|LTR|ERVL-MaLR	16224	NR_110209	101927053	Hs.677537	NR_110209		LOC101927053	-	uncharacterized LOC101927053	ncRNA
3869	chr3	93801384	93801646	+	0	NA	intron (NM_022072, intron 2 of 5)	Helitron3Na_Mam|RC|Helitron	-19448	NM_001195643	200895	Hs.718516	NM_176815	ENSG00000178700	DHFR2	DHFRL1|DHFRP4	dihydrofolate reductase 2	protein-coding
1985	chr15	27516624	27516894	+	0	NA	intron (NM_033223, intron 3 of 9)	intron (NM_033223, intron 3 of 9)	-110293	NR_120343	101928869	Hs.585699	NR_120343	ENSG00000228740	GABRG3-AS1	-	GABRG3 antisense RNA 1	ncRNA
2669	chr18	37405311	37405345	+	0	NA	Intergenic	Intergenic	-73369	NR_024391	647946	Hs.649350	NR_024391	ENSG00000267374	MIR924HG	LINC00669	MIR924 host gene	ncRNA
1691	chr14	37240875	37241130	+	0	NA	intron (NM_030631, intron 3 of 9)	Charlie18a|DNA|hAT-Charlie	114229	NM_006194	5083	Hs.132576	NM_006194	ENSG00000198807	PAX9	STHAG3	paired box 9	protein-coding
3567	chr20	42647064	42647532	+	0	NA	intron (NM_001098798, intron 3 of 7)	intron (NM_001098798, intron 3 of 7)	72762	NM_001098798	84969	Hs.26608	NM_032883	ENSG00000124191	TOX2	C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1	TOX high mobility group box family member 2	protein-coding
5505	chr7	146353267	146353797	+	0	NA	intron (NM_014141, intron 1 of 23)	intron (NM_014141, intron 1 of 23)	441169	NR_110829	101928700	Hs.571218	NR_110829	ENSG00000236795	LOC101928700	-	uncharacterized LOC101928700	ncRNA
2003	chr15	39655157	39655300	+	0	NA	Intergenic	Intergenic	112358	NM_001302797	400360	Hs.376109	NM_207445		C15orf54	-	chromosome 15 open reading frame 54	ncRNA
3666	chr21	34814590	34814849	+	0	NA	intron (NR_040016, intron 7 of 8)	intron (NR_040016, intron 7 of 8)	37597	NR_040016	757	Hs.433668	NM_006134	ENSG00000142188	TMEM50B	C21orf4|HCVP7TP3	transmembrane protein 50B	protein-coding