PeakID (cmd=annotatePeaks.pl SCLC_BL4000_overlaps3_less_LUAD_overlaps2_on_SEoverlap3.bed hg19) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type 127 chr14 36971368 36971793 + 0 NA intron (NR_138596, intron 1 of 4) intron (NR_138596, intron 1 of 4) 11410 NR_138598 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 32 chr10 105309186 105309364 + 0 NA intron (NM_004210, intron 1 of 5) intron (NM_004210, intron 1 of 5) -32076 NR_120675 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 276 chr3 183095580 183096084 + 0 NA intron (NM_015078, intron 3 of 29) intron (NM_015078, intron 3 of 29) 50225 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 90 chr12 122596320 122596462 + 0 NA intron (NM_014938, intron 1 of 16) intron (NM_014938, intron 1 of 16) -55875 NM_152759 254050 Hs.374856 NM_152759 ENSG00000158113 LRRC43 - leucine rich repeat containing 43 protein-coding 206 chr18 20718743 20718813 + 0 NA intron (NM_001100619, intron 1 of 9) intron (NM_001100619, intron 1 of 9) 3051 NM_001100619 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 118 chr13 107881955 107882325 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 301456 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 71 chr12 68744103 68744499 + 0 NA Intergenic Intergenic -18140 NM_020128 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 102 chr12 129562976 129563390 + 0 NA exon (NM_133448, exon 8 of 9) exon (NM_133448, exon 8 of 9) -31052 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 LOC283352 - uncharacterized LOC283352 ncRNA 358 chr7 129991435 129992132 + 0 NA intron (NM_001127441, intron 6 of 13) intron (NM_001127441, intron 6 of 13) 7153 NM_080385 93979 Hs.567642 NM_080385 ENSG00000158525 CPA5 - carboxypeptidase A5 protein-coding 331 chr6 80507577 80508051 + 0 NA Intergenic Intergenic 14149 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 16 chr1 206723668 206723738 + 0 NA intron (NM_182664, intron 2 of 4) L2b|LINE|L2 -6789 NM_182665 83593 Hs.497579 NM_031437 ENSG00000266094 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association domain family member 5 protein-coding 55 chr11 111181061 111181453 + 0 NA Intergenic Intergenic -5484 NM_001302644 399948 Hs.729225 NM_207429 COLCA1 C11orf92|CASC12|LOH11CR1F colorectal cancer associated 1 protein-coding 84 chr12 117549931 117550338 + 0 NA intron (NR_120464, intron 2 of 2) intron (NR_120464, intron 2 of 2) 12862 NR_120464 101928244 Hs.742266 NR_120464 TESC-AS1 - TESC antisense RNA 1 (head to head) ncRNA 233 chr19 13137327 13137590 + 0 NA intron (NM_001271043, intron 2 of 10) intron (NM_001271043, intron 2 of 10) 2063 NM_001271043 4784 Hs.257970 NM_002501 ENSG00000008441 NFIX CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2 nuclear factor I X protein-coding 259 chr21 36600286 36600634 + 0 NA Intergenic Intergenic -178865 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 194 chr17 76390635 76390800 + 0 NA intron (NR_110602, intron 2 of 8) AluSp|SINE|Alu 16018 NM_024419 9489 Hs.654671 NM_024419 ENSG00000087157 PGS1 - phosphatidylglycerophosphate synthase 1 protein-coding 57 chr12 6482529 6482886 + 0 NA intron (NM_001159576, intron 1 of 11) intron (NM_001159576, intron 1 of 11) 1683 NM_001159576 6337 Hs.591047 NM_001038 ENSG00000111319 SCNN1A BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1 sodium channel epithelial 1 alpha subunit protein-coding 368 chr7 130061596 130061834 + 0 NA 3' UTR (NM_001257160, exon 3 of 3) 3' UTR (NM_001257160, exon 3 of 3) 19336 NM_001257159 95681 Hs.368315 NM_018718 ENSG00000106477 CEP41 JBTS15|TSGA14 centrosomal protein 41 protein-coding 220 chr18 45748472 45748618 + 0 NA intron (NM_001318841, intron 2 of 4) intron (NM_001318841, intron 2 of 4) -84865 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 316 chr5 134819930 134820210 + 0 NA Intergenic AluY|SINE|Alu -31981 NM_001099221 497189 Hs.552091 NM_001099221 ENSG00000255833 TIFAB - TIFA inhibitor protein-coding 163 chr16 52586455 52586490 + 0 NA intron (NR_033920, intron 3 of 3) intron (NR_033920, intron 3 of 3) -4758 NM_001146188 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 395 chr9 92302348 92302545 + 0 NA intron (NR_024280, intron 3 of 5) intron (NR_024280, intron 3 of 5) 47748 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 89 chr12 122596115 122596319 + 0 NA intron (NM_014938, intron 1 of 16) intron (NM_014938, intron 1 of 16) -56049 NM_152759 254050 Hs.374856 NM_152759 ENSG00000158113 LRRC43 - leucine rich repeat containing 43 protein-coding 175 chr16 84554289 84554850 + 0 NA Intergenic Intergenic -16281 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 TLDC1 KIAA1609 TBC/LysM-associated domain containing 1 protein-coding 31 chr10 105308980 105309185 + 0 NA intron (NM_004210, intron 1 of 5) intron (NM_004210, intron 1 of 5) -31883 NR_120675 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 35 chr10 112554836 112555332 + 0 NA intron (NM_001134363, intron 5 of 13) intron (NM_001134363, intron 5 of 13) 75578 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 11 chr1 202934072 202934224 + 0 NA intron (NM_016243, intron 5 of 8) intron (NM_016243, intron 5 of 8) 2256 NM_016243 51706 Hs.334832 NM_016243 ENSG00000159348 CYB5R1 B5R.1|B5R1|B5R2|NQO3A2|humb5R2 cytochrome b5 reductase 1 protein-coding 347 chr6 123066225 123066337 + 0 NA Intergenic HERVE_a-int|LTR|ERV1 -4065 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 208 chr18 31382967 31383020 + 0 NA Intergenic Intergenic 224452 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding 93 chr12 123617070 123617152 + 0 NA Intergenic L1MB4|LINE|L1 -22075 NM_001300801 57605 Hs.272759 NM_020845 ENSG00000090975 PITPNM2 NIR-3|NIR3|RDGB2|RDGBA2 phosphatidylinositol transfer protein membrane associated 2 protein-coding 292 chr4 166319539 166319775 + 0 NA intron (NM_001873, intron 1 of 8) intron (NM_001873, intron 1 of 8) 12263 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 378 chr8 6649869 6650256 + 0 NA Intergenic MLT1A1|LTR|ERVL-MaLR -43014 NR_045217 100652791 Hs.369771 NR_045217 ENSG00000245857 GS1-24F4.2 - uncharacterized LOC100652791 ncRNA 325 chr6 20717885 20718145 + 0 NA intron (NM_017774, intron 5 of 15) intron (NM_017774, intron 5 of 15) 183327 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 29 chr10 92970845 92970917 + 0 NA intron (NM_001257101, intron 1 of 9) intron (NM_001257101, intron 1 of 9) -9027 NM_001256549 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 350 chr6 124289215 124289415 + 0 NA intron (NM_153355, intron 1 of 5) intron (NM_153355, intron 1 of 5) 164324 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 291 chr4 139832023 139832103 + 0 NA intron (NR_133945, intron 2 of 2) intron (NR_133945, intron 2 of 2) 101737 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 374 chr8 5925155 5925675 + 0 NA Intergenic Intergenic 338654 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 199 chr18 3720649 3720832 + 0 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 117005 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 114 chr13 107881447 107881697 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 302024 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 226 chr19 5961920 5961970 + 0 NA intron (NM_003624, intron 1 of 16) L2a|LINE|L2 16375 NM_001300865 8498 Hs.531752 NM_003624 ENSG00000031823 RANBP3 - RAN binding protein 3 protein-coding 58 chr12 6482887 6483030 + 0 NA intron (NM_001159576, intron 1 of 11) intron (NM_001159576, intron 1 of 11) 1432 NM_001159576 6337 Hs.591047 NM_001038 ENSG00000111319 SCNN1A BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1 sodium channel epithelial 1 alpha subunit protein-coding 211 chr18 31383268 31383498 + 0 NA Intergenic Intergenic 224842 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding 153 chr15 74515666 74515678 + 0 NA Intergenic Intergenic -12958 NM_025055 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 15 chr1 203290437 203290768 + 0 NA Intergenic Intergenic 15938 NM_006763 7832 Hs.519162 NM_006763 ENSG00000159388 BTG2 APRO1|PC3|TIS21 BTG anti-proliferation factor 2 protein-coding 382 chr8 73735899 73736994 + 0 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 92166 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 337 chr6 80520546 80520577 + 0 NA intron (NR_131786, intron 2 of 4) intron (NR_131786, intron 2 of 4) 1402 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 101 chr12 129562571 129562975 + 0 NA intron (NM_133448, intron 8 of 8) intron (NM_133448, intron 8 of 8) -31462 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 LOC283352 - uncharacterized LOC283352 ncRNA 73 chr12 103634702 103634845 + 0 NA intron (NR_103526, intron 10 of 10) intron (NR_103526, intron 10 of 10) 89153 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 340 chr6 111862649 111862770 + 0 NA intron (NR_034109, intron 1 of 1) intron (NR_034109, intron 1 of 1) 25854 NM_001164283 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 76 chr12 103635249 103635547 + 0 NA intron (NR_103526, intron 10 of 10) MIR3|SINE|MIR 89778 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 311 chr5 51306340 51306527 + 0 NA Intergenic Intergenic -627267 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 62 chr12 42313622 42313701 + 0 NA Intergenic Intergenic 155670 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LOC101927038 - uncharacterized LOC101927038 ncRNA 67 chr12 68742863 68743289 + 0 NA Intergenic Intergenic -16915 NM_020128 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 241 chr2 70360116 70360483 + 0 NA Intergenic Intergenic -7851 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 198 chr18 3716053 3716685 + 0 NA intron (NM_001308390, intron 4 of 10) AluJr|SINE|Alu 112634 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 139 chr14 70180696 70180762 + 0 NA 3' UTR (NM_014734, exon 6 of 6) 3' UTR (NM_014734, exon 6 of 6) -53075 NM_006925 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 389 chr9 2298896 2299027 + 0 NA Intergenic Arthur1A|DNA|hAT-Tip100 140505 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 129 chr14 36972152 36972818 + 0 NA intron (NR_138596, intron 1 of 4) intron (NR_138596, intron 1 of 4) 10505 NR_138598 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 327 chr6 20718765 20718938 + 0 NA intron (NM_017774, intron 5 of 15) intron (NM_017774, intron 5 of 15) 184163 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 320 chr6 19298114 19298464 + 0 NA Intergenic Intergenic -117578 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 280 chr4 8012654 8013035 + 0 NA intron (NM_001130086, intron 11 of 17) intron (NM_001130086, intron 11 of 17) -5736 NR_029511 407052 NR_029511 ENSG00000207807 MIR95 MIRN95|hsa-mir-95|miR-95 microRNA 95 ncRNA 273 chr21 40358266 40358416 + 0 NA Intergenic Intergenic -8641 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LINC01700 - long intergenic non-protein coding RNA 1700 ncRNA 236 chr2 58104752 58105027 + 0 NA Intergenic Intergenic -29897 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - vaccinia related kinase 2 protein-coding 361 chr7 130004935 130004984 + 0 NA TTS (NR_133928) TTS (NR_133928) 2009 NR_133928 105375504 Hs.436058 NR_133928 LOC105375504 - uncharacterized LOC105375504 ncRNA 249 chr2 136899360 136899419 + 0 NA Intergenic Intergenic -23664 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 218 chr18 45743649 45743717 + 0 NA intron (NM_001318841, intron 2 of 4) intron (NM_001318841, intron 2 of 4) -80003 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 202 chr18 3726321 3726340 + 0 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 119028 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 168 chr16 66369021 66369045 + 0 NA Intergenic Intergenic -31477 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 184 chr17 55129105 55129433 + 0 NA Intergenic Intergenic 6430 NR_002818 376412 Hs.132299 NR_002818 ENSG00000261192 RNF126P1 - ring finger protein 126 pseudogene 1 pseudo 135 chr14 61696456 61696716 + 0 NA Intergenic Intergenic 51944 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 14 chr1 203289954 203290436 + 0 NA Intergenic Intergenic 15531 NM_006763 7832 Hs.519162 NM_006763 ENSG00000159388 BTG2 APRO1|PC3|TIS21 BTG anti-proliferation factor 2 protein-coding 348 chr6 123066338 123066684 + 0 NA Intergenic 7SLRNA|srpRNA|srpRNA -3835 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 145 chr15 58756162 58756361 + 0 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 32086 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 49 chr11 92949613 92950058 + 0 NA Intergenic Intergenic -18694 NM_152313 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 178 chr17 32701554 32701910 + 0 NA Intergenic Intergenic -11480 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 24 chr10 80319890 80320143 + 0 NA Intergenic Intergenic 292931 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 285 chr4 8041496 8041604 + 0 NA intron (NM_001130083, intron 9 of 20) intron (NM_001130083, intron 9 of 20) 32193 NM_001286688 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family member 2 protein-coding 140 chr14 70180763 70181013 + 0 NA 3' UTR (NM_014734, exon 6 of 6) 3' UTR (NM_014734, exon 6 of 6) -52916 NM_006925 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 124 chr14 29685391 29685605 + 0 NA Intergenic Intergenic -430505 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LOC105370424 - uncharacterized LOC105370424 ncRNA 104 chr13 99053984 99054447 + 0 NA intron (NM_005766, intron 13 of 26) intron (NM_005766, intron 13 of 26) 120164 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 131 chr14 61084968 61085462 + 0 NA Intergenic Intergenic -20719 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 181 chr17 36571844 36571900 + 0 NA Intergenic Intergenic -12848 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 385 chr8 81064356 81064464 + 0 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 19025 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 234 chr19 13137591 13137764 + 0 NA intron (NM_001271043, intron 2 of 10) intron (NM_001271043, intron 2 of 10) 2282 NM_001271043 4784 Hs.257970 NM_002501 ENSG00000008441 NFIX CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2 nuclear factor I X protein-coding 314 chr5 51787374 51787514 + 0 NA Intergenic Intergenic -296330 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota homolog (Drosophila) protein-coding 307 chr5 38540558 38540693 + 0 NA intron (NM_002310, intron 1 of 19) intron (NM_002310, intron 1 of 19) 16123 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 154 chr15 74515679 74515798 + 0 NA Intergenic Intergenic -12892 NM_025055 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 23 chr10 80319624 80319889 + 0 NA Intergenic Intergenic 292671 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 388 chr8 101428315 101428575 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie 33454 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 364 chr7 130048751 130049003 + 0 NA intron (NM_001257158, intron 5 of 9) intron (NM_001257158, intron 5 of 9) 28665 NM_001868 1357 Hs.2879 NM_001868 ENSG00000091704 CPA1 CPA carboxypeptidase A1 protein-coding 96 chr12 125566676 125566797 + 0 NA intron (NM_023928, intron 3 of 17) AluJb|SINE|Alu 16823 NM_001319839 65985 Hs.656073 NM_023928 ENSG00000081760 AACS ACSF1|SUR-5 acetoacetyl-CoA synthetase protein-coding 355 chr7 129912809 129913107 + 0 NA exon (NM_001869, exon 5 of 11) exon (NM_001869, exon 5 of 11) 6255 NM_001869 1358 Hs.490038 NM_001869 ENSG00000158516 CPA2 - carboxypeptidase A2 protein-coding 159 chr16 1940488 1940615 + 0 NA Intergenic Intergenic -6319 NR_033914 64735 Hs.662737 NR_033914 ENSG00000281219 LINC00254 C16orf32|NCRNA00254 long intergenic non-protein coding RNA 254 ncRNA 326 chr6 20718146 20718298 + 0 NA intron (NM_017774, intron 5 of 15) intron (NM_017774, intron 5 of 15) 183534 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 160 chr16 1940616 1940644 + 0 NA Intergenic Intergenic -6398 NR_033914 64735 Hs.662737 NR_033914 ENSG00000281219 LINC00254 C16orf32|NCRNA00254 long intergenic non-protein coding RNA 254 ncRNA 47 chr11 70760404 70760714 + 0 NA intron (NM_012309, intron 7 of 22) intron (NM_012309, intron 7 of 22) -42086 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 367 chr7 130061108 130061595 + 0 NA 3' UTR (NM_001257160, exon 3 of 3) 3' UTR (NM_001257160, exon 3 of 3) 19700 NM_001257159 95681 Hs.368315 NM_018718 ENSG00000106477 CEP41 JBTS15|TSGA14 centrosomal protein 41 protein-coding 8 chr1 202933842 202934019 + 0 NA intron (NM_016243, intron 5 of 8) intron (NM_016243, intron 5 of 8) 2474 NM_016243 51706 Hs.334832 NM_016243 ENSG00000159348 CYB5R1 B5R.1|B5R1|B5R2|NQO3A2|humb5R2 cytochrome b5 reductase 1 protein-coding 98 chr12 129556013 129556175 + 0 NA TTS (NM_133448) TTS (NM_133448) -38141 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 LOC283352 - uncharacterized LOC283352 ncRNA 335 chr6 80519777 80520281 + 0 NA intron (NR_131786, intron 2 of 4) intron (NR_131786, intron 2 of 4) 1934 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 37 chr11 12340984 12341290 + 0 NA intron (NM_032867, intron 3 of 8) intron (NM_032867, intron 3 of 8) 32690 NM_032867 84953 Hs.128196 NM_032867 ENSG00000133808 MICALCL Ebitein1 MICAL C-terminal like protein-coding 43 chr11 12777826 12778027 + 0 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 81957 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 270 chr21 40357787 40357864 + 0 NA Intergenic Intergenic -8125 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LINC01700 - long intergenic non-protein coding RNA 1700 ncRNA 195 chr17_gl000205_random 84309 84398 + 0 NA Intergenic LTR76|LTR|ERV1 -32270 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 5 chr1 42806950 42806997 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -5425 NM_001198850 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 391 chr9 2299607 2299850 + 0 NA Intergenic Intergenic 141272 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 21 chr1 207232583 207233112 + 0 NA intron (NM_001018053, intron 2 of 14) intron (NM_001018053, intron 2 of 14) 6227 NM_006212 5208 Hs.282702 NM_006212 ENSG00000123836 PFKFB2 PFK-2/FBPase-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 protein-coding 288 chr4 139819215 139819758 + 0 NA intron (NR_133945, intron 2 of 2) intron (NR_133945, intron 2 of 2) 114314 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 193 chr17 76390279 76390634 + 0 NA intron (NR_110602, intron 2 of 8) intron (NR_110602, intron 2 of 8) 15757 NM_024419 9489 Hs.654671 NM_024419 ENSG00000087157 PGS1 - phosphatidylglycerophosphate synthase 1 protein-coding 119 chr13 112331686 112331964 + 0 NA Intergenic Intergenic 83469 NR_135814 105370369 NR_135814 ENSG00000215881 LOC105370369 - uncharacterized LOC105370369 ncRNA 324 chr6 20691913 20692187 + 0 NA intron (NM_017774, intron 5 of 15) Charlie7a|DNA|hAT-Charlie 157362 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 180 chr17 36571519 36571558 + 0 NA Intergenic Intergenic -13182 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 244 chr2 99486830 99486856 + 0 NA intron (NM_207362, intron 1 of 9) intron (NM_207362, intron 1 of 9) 65841 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 162 chr16 1940925 1941265 + 0 NA Intergenic AluSx|SINE|Alu -6863 NR_033914 64735 Hs.662737 NR_033914 ENSG00000281219 LINC00254 C16orf32|NCRNA00254 long intergenic non-protein coding RNA 254 ncRNA 351 chr6 124289416 124289671 + 0 NA intron (NM_153355, intron 1 of 5) intron (NM_153355, intron 1 of 5) 164552 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 246 chr2 136898959 136899046 + 0 NA Intergenic Intergenic -23277 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 240 chr2 70359865 70360115 + 0 NA Intergenic Intergenic -7542 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 74 chr12 103634846 103635111 + 0 NA intron (NR_103526, intron 10 of 10) intron (NR_103526, intron 10 of 10) 89358 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 334 chr6 80519642 80519776 + 0 NA intron (NR_131786, intron 2 of 4) intron (NR_131786, intron 2 of 4) 2254 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 61 chr12 42313424 42313621 + 0 NA Intergenic Intergenic 155531 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LOC101927038 - uncharacterized LOC101927038 ncRNA 230 chr19 13023224 13023771 + 0 NA intron (NM_001105578, intron 2 of 5) intron (NM_001105578, intron 2 of 5) 6589 NM_001105578 256126 Hs.655173 NM_001105578 ENSG00000161860 SYCE2 CESC1 synaptonemal complex central element protein 2 protein-coding 299 chr5 1603971 1604007 + 0 NA intron (NR_003713, intron 2 of 3) intron (NR_003713, intron 2 of 3) -9343 NR_003263 728609 Hs.379186 NR_003263 SDHAP3 SDHACL|SDHAL succinate dehydrogenase complex flavoprotein subunit A pseudogene 3 pseudo 115 chr13 107881698 107881713 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 301891 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 377 chr8 6649734 6649868 + 0 NA Intergenic MER51E|LTR|ERV1 -43275 NR_045217 100652791 Hs.369771 NR_045217 ENSG00000245857 GS1-24F4.2 - uncharacterized LOC100652791 ncRNA 103 chr13 99053709 99053983 + 0 NA intron (NM_005766, intron 13 of 26) intron (NM_005766, intron 13 of 26) 120533 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 201 chr18 3721250 3721276 + 0 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 117528 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 379 chr8 61704969 61705133 + 0 NA intron (NM_017780, intron 3 of 37) intron (NM_017780, intron 3 of 37) 51233 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 113 chr13 107863415 107863946 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 319916 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 152 chr15 60651707 60651731 + 0 NA intron (NM_001002857, intron 6 of 13) intron (NM_001002857, intron 6 of 13) 38466 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 189 chr17 75731962 75732651 + 0 NA Intergenic MIR3|SINE|MIR -7665 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 342 chr6 111873051 111873453 + 0 NA intron (NR_034109, intron 1 of 1) intron (NR_034109, intron 1 of 1) 15311 NM_001164283 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 295 chr4 166319913 166320109 + 0 NA intron (NM_001873, intron 1 of 8) intron (NM_001873, intron 1 of 8) 12617 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 266 chr21 40328584 40328667 + 0 NA Intergenic Intergenic -18272 NR_120405 400867 Hs.689509 NR_120405 LOC400867 - uncharacterized LOC400867 ncRNA 91 chr12 123616309 123616466 + 0 NA Intergenic Intergenic -21351 NM_001300801 57605 Hs.272759 NM_020845 ENSG00000090975 PITPNM2 NIR-3|NIR3|RDGB2|RDGBA2 phosphatidylinositol transfer protein membrane associated 2 protein-coding 341 chr6 111872873 111873050 + 0 NA intron (NR_034109, intron 1 of 1) intron (NR_034109, intron 1 of 1) 15602 NM_001164283 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 107 chr13 99057562 99057792 + 0 NA intron (NM_005766, intron 13 of 26) intron (NM_005766, intron 13 of 26) 116702 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 87 chr12 119808036 119808546 + 0 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 35774 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 174 chr16 84553742 84554288 + 0 NA Intergenic L1M5|LINE|L1 -15727 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 TLDC1 KIAA1609 TBC/LysM-associated domain containing 1 protein-coding 77 chr12 103635548 103636180 + 0 NA intron (NR_103526, intron 10 of 10) intron (NR_103526, intron 10 of 10) 90244 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 214 chr18 31385817 31385927 + 0 NA Intergenic MIR|SINE|MIR 227331 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding 221 chr18 45748619 45748865 + 0 NA intron (NM_001318841, intron 2 of 4) intron (NM_001318841, intron 2 of 4) -85062 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 39 chr11 12341351 12341553 + 0 NA intron (NM_032867, intron 4 of 8) intron (NM_032867, intron 4 of 8) 33005 NM_032867 84953 Hs.128196 NM_032867 ENSG00000133808 MICALCL Ebitein1 MICAL C-terminal like protein-coding 64 chr12 49608433 49608951 + 0 NA Intergenic Intergenic -13017 NM_001303117 84790 Hs.652390 NM_032704 ENSG00000167553 TUBA1C TUBA6|bcm948 tubulin alpha 1c protein-coding 97 chr12 129555855 129556012 + 0 NA TTS (NM_133448) TTS (NM_133448) -38302 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 LOC283352 - uncharacterized LOC283352 ncRNA 12 chr1 202934225 202934622 + 0 NA intron (NM_016243, intron 5 of 8) intron (NM_016243, intron 5 of 8) 1981 NM_016243 51706 Hs.334832 NM_016243 ENSG00000159348 CYB5R1 B5R.1|B5R1|B5R2|NQO3A2|humb5R2 cytochrome b5 reductase 1 protein-coding 41 chr11 12777413 12777636 + 0 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 81555 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 52 chr11 92950402 92950562 + 0 NA Intergenic L2c|LINE|L2 -19341 NM_152313 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 312 chr5 51306528 51306772 + 0 NA Intergenic Intergenic -627484 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 302 chr5 6453080 6453292 + 0 NA intron (NM_001145161, intron 1 of 1) intron (NM_001145161, intron 1 of 1) 4450 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 229 chr19 13023041 13023223 + 0 NA intron (NM_001105578, intron 2 of 5) intron (NM_001105578, intron 2 of 5) 6954 NM_001105578 256126 Hs.655173 NM_001105578 ENSG00000161860 SYCE2 CESC1 synaptonemal complex central element protein 2 protein-coding 45 chr11 70759645 70759709 + 0 NA intron (NM_012309, intron 7 of 22) intron (NM_012309, intron 7 of 22) -41204 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 260 chr21 38436216 38436373 + 0 NA promoter-TSS (NR_131189) promoter-TSS (NR_131189) 72 NR_131189 105372795 Hs.528019 NR_131189 LOC105372795 - uncharacterized LOC105372795 ncRNA 237 chr2 58105028 58105479 + 0 NA Intergenic Intergenic -29533 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - vaccinia related kinase 2 protein-coding 370 chr7 141116440 141116597 + 0 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) -134560 NM_018238 55750 Hs.743318 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 309 chr5 38540784 38540975 + 0 NA intron (NM_002310, intron 1 of 19) MER102b|DNA|hAT-Charlie 15869 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 188 chr17 75731581 75731961 + 0 NA Intergenic Intergenic -7130 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 68 chr12 68743290 68743510 + 0 NA Intergenic Intergenic -17239 NM_020128 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 315 chr5 51787515 51788205 + 0 NA Intergenic Intergenic -295914 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota homolog (Drosophila) protein-coding 1 chr1 42805598 42805708 + 0 NA Intergenic Intergenic -4105 NM_001198850 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 136 chr14 70162643 70162811 + 0 NA intron (NM_014734, intron 2 of 5) intron (NM_014734, intron 2 of 5) -71077 NM_006925 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 116 chr13 107881714 107881885 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 301797 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 338 chr6 111862003 111862490 + 0 NA intron (NR_034109, intron 1 of 1) intron (NR_034109, intron 1 of 1) 26317 NM_001164283 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 144 chr15 40384867 40385115 + 0 NA intron (NM_001003943, intron 3 of 3) intron (NM_001003943, intron 3 of 3) 13296 NM_001003942 90427 Hs.591104 NM_033503 ENSG00000104081 BMF - Bcl2 modifying factor protein-coding 380 chr8 61705134 61705796 + 0 NA intron (NM_017780, intron 3 of 37) intron (NM_017780, intron 3 of 37) 51647 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 100 chr12 129562383 129562570 + 0 NA intron (NM_133448, intron 8 of 8) (CA)n|Simple_repeat|Simple_repeat -31759 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 LOC283352 - uncharacterized LOC283352 ncRNA 300 chr5 1604008 1604684 + 0 NA intron (NR_003713, intron 2 of 3) intron (NR_003713, intron 2 of 3) -9700 NR_003263 728609 Hs.379186 NR_003263 SDHAP3 SDHACL|SDHAL succinate dehydrogenase complex flavoprotein subunit A pseudogene 3 pseudo 222 chr18 45748866 45749155 + 0 NA intron (NM_001318841, intron 2 of 4) intron (NM_001318841, intron 2 of 4) -85330 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 25 chr10 92969832 92970211 + 0 NA intron (NM_001257101, intron 1 of 9) intron (NM_001257101, intron 1 of 9) -9887 NM_001256549 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 286 chr4 139818940 139818957 + 0 NA intron (NR_133945, intron 2 of 2) MER5A|DNA|hAT-Charlie 114852 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 120 chr13 112331965 112332014 + 0 NA Intergenic Intergenic 83633 NR_135814 105370369 NR_135814 ENSG00000215881 LOC105370369 - uncharacterized LOC105370369 ncRNA 83 chr12 117549742 117549930 + 0 NA intron (NR_120464, intron 2 of 2) intron (NR_120464, intron 2 of 2) 12564 NR_120464 101928244 Hs.742266 NR_120464 TESC-AS1 - TESC antisense RNA 1 (head to head) ncRNA 381 chr8 61705797 61705890 + 0 NA intron (NM_017780, intron 3 of 37) intron (NM_017780, intron 3 of 37) 52025 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 305 chr5 38540159 38540476 + 0 NA intron (NM_002310, intron 1 of 19) MIRc|SINE|MIR 16431 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 308 chr5 38540694 38540783 + 0 NA intron (NM_002310, intron 1 of 19) MER102b|DNA|hAT-Charlie 16010 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 392 chr9 14326057 14326084 + 0 NA intron (NM_001190738, intron 1 of 8) intron (NM_001190738, intron 1 of 8) -12025 NM_001190737 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 254 chr20 32142754 32142900 + 0 NA intron (NM_001032999, intron 1 of 10) MER57E1|LTR|ERV1 -7344 NM_001039709 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 translocation partner 2 protein-coding 177 chr17 32700885 32701553 + 0 NA Intergenic Intergenic -10967 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 373 chr8 5925031 5925154 + 0 NA Intergenic Intergenic 338977 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 217 chr18 45743423 45743648 + 0 NA intron (NM_001318841, intron 2 of 4) MLT1C|LTR|ERVL-MaLR -79855 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 328 chr6 20718299 20718764 + 0 NA intron (NM_017774, intron 5 of 15) intron (NM_017774, intron 5 of 15) 183843 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 239 chr2 70359528 70359864 + 0 NA Intergenic Intergenic -7248 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 122 chr13 112332018 112332203 + 0 NA Intergenic Intergenic 83754 NR_135814 105370369 NR_135814 ENSG00000215881 LOC105370369 - uncharacterized LOC105370369 ncRNA 143 chr15 40384634 40384866 + 0 NA intron (NM_001003943, intron 3 of 3) intron (NM_001003943, intron 3 of 3) 13537 NM_001003942 90427 Hs.591104 NM_033503 ENSG00000104081 BMF - Bcl2 modifying factor protein-coding 281 chr4 8040301 8040351 + 0 NA intron (NM_001130083, intron 9 of 20) L2c|LINE|L2 -33218 NR_029511 407052 NR_029511 ENSG00000207807 MIR95 MIRN95|hsa-mir-95|miR-95 microRNA 95 ncRNA 269 chr21 40357726 40357786 + 0 NA Intergenic Intergenic -8056 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LINC01700 - long intergenic non-protein coding RNA 1700 ncRNA 205 chr18 20718373 20718413 + 0 NA intron (NM_001100619, intron 1 of 9) intron (NM_001100619, intron 1 of 9) 2666 NM_001100619 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 158 chr16 1940278 1940487 + 0 NA Intergenic Intergenic -6150 NR_033914 64735 Hs.662737 NR_033914 ENSG00000281219 LINC00254 C16orf32|NCRNA00254 long intergenic non-protein coding RNA 254 ncRNA 42 chr11 12777637 12777825 + 0 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 81762 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 22 chr10 80319166 80319623 + 0 NA Intergenic MIR3|SINE|MIR 292309 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 363 chr7 130005628 130005841 + 0 NA intron (NR_133928, intron 1 of 1) intron (NR_133928, intron 1 of 1) 1234 NR_133928 105375504 Hs.436058 NR_133928 LOC105375504 - uncharacterized LOC105375504 ncRNA 46 chr11 70759710 70760403 + 0 NA intron (NM_012309, intron 7 of 22) intron (NM_012309, intron 7 of 22) -41583 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 399 chr9 129200676 129200731 + 0 NA intron (NM_033446, intron 7 of 9) intron (NM_033446, intron 7 of 9) -27920 NR_045006 641373 Hs.742606 NR_045006 NRON NCRNA00194 non-protein coding RNA, repressor of NFAT ncRNA 235 chr2 51239757 51239982 + 0 NA intron (NM_001330081, intron 2 of 5) intron (NM_001330081, intron 2 of 5) 19805 NM_001330085 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 301 chr5 1604685 1604788 + 0 NA intron (NR_003713, intron 2 of 3) intron (NR_003713, intron 2 of 3) -10090 NR_003263 728609 Hs.379186 NR_003263 SDHAP3 SDHACL|SDHAL succinate dehydrogenase complex flavoprotein subunit A pseudogene 3 pseudo 6 chr1 202933654 202933767 + 0 NA intron (NM_016243, intron 6 of 8) intron (NM_016243, intron 6 of 8) 2694 NM_016243 51706 Hs.334832 NM_016243 ENSG00000159348 CYB5R1 B5R.1|B5R1|B5R2|NQO3A2|humb5R2 cytochrome b5 reductase 1 protein-coding 36 chr11 12340562 12340983 + 0 NA intron (NM_032867, intron 3 of 8) intron (NM_032867, intron 3 of 8) 32325 NM_032867 84953 Hs.128196 NM_032867 ENSG00000133808 MICALCL Ebitein1 MICAL C-terminal like protein-coding 213 chr18 31385559 31385816 + 0 NA Intergenic Intergenic 227146 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding 183 chr17 36572144 36572342 + 0 NA Intergenic Intergenic -12477 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 94 chr12 125565803 125566019 + 0 NA intron (NM_023928, intron 3 of 17) intron (NM_023928, intron 3 of 17) 15998 NM_001319839 65985 Hs.656073 NM_023928 ENSG00000081760 AACS ACSF1|SUR-5 acetoacetyl-CoA synthetase protein-coding 51 chr11 92950258 92950401 + 0 NA Intergenic Intergenic -19188 NM_152313 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 362 chr7 130004985 130005627 + 0 NA TTS (NR_133928) TTS (NR_133928) 1662 NR_133928 105375504 Hs.436058 NR_133928 LOC105375504 - uncharacterized LOC105375504 ncRNA 317 chr5 134820211 134820429 + 0 NA Intergenic MamRep434|DNA|TcMar-Tigger -32231 NM_001099221 497189 Hs.552091 NM_001099221 ENSG00000255833 TIFAB - TIFA inhibitor protein-coding 296 chr4 166320110 166320236 + 0 NA intron (NM_001873, intron 1 of 8) intron (NM_001873, intron 1 of 8) 12779 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 265 chr21 38439692 38439742 + 0 NA intron (NM_016430, intron 4 of 5) intron (NM_016430, intron 4 of 5) -3351 NR_131189 105372795 Hs.528019 NR_131189 LOC105372795 - uncharacterized LOC105372795 ncRNA 169 chr16 66369046 66369508 + 0 NA Intergenic Intergenic -31233 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 132 chr14 61085463 61085616 + 0 NA Intergenic AluSx|SINE|Alu -20395 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 171 chr16 77484431 77484499 + 0 NA Intergenic Intergenic -15454 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 398 chr9 120162826 120163188 + 0 NA intron (NM_014010, intron 1 of 21) intron (NM_014010, intron 1 of 21) 14310 NM_014010 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 384 chr8 81064118 81064355 + 0 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 19199 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 386 chr8 81079393 81079553 + 0 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 3962 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 200 chr18 3720833 3721249 + 0 NA intron (NM_001308390, intron 4 of 10) AluJo|SINE|Alu 117306 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 18 chr1 206724076 206724344 + 0 NA intron (NM_182664, intron 2 of 4) intron (NM_182664, intron 2 of 4) -6282 NM_182665 83593 Hs.497579 NM_031437 ENSG00000266094 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association domain family member 5 protein-coding 376 chr8 6649500 6649733 + 0 NA Intergenic MER51E|LTR|ERV1 -43460 NR_045217 100652791 Hs.369771 NR_045217 ENSG00000245857 GS1-24F4.2 - uncharacterized LOC100652791 ncRNA 366 chr7 130049299 130049690 + 0 NA intron (NM_001257158, intron 5 of 9) intron (NM_001257158, intron 5 of 9) 29282 NM_001868 1357 Hs.2879 NM_001868 ENSG00000091704 CPA1 CPA carboxypeptidase A1 protein-coding 125 chr14 29685606 29685941 + 0 NA Intergenic Intergenic -430780 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LOC105370424 - uncharacterized LOC105370424 ncRNA 329 chr6 80507329 80507349 + 0 NA Intergenic Intergenic 14624 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 44 chr11 12824541 12824769 + 0 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 128686 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 27 chr10 92970586 92970606 + 0 NA intron (NM_001257101, intron 1 of 9) intron (NM_001257101, intron 1 of 9) -9312 NM_001256549 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 272 chr21 40357989 40358265 + 0 NA Intergenic Intergenic -8427 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LINC01700 - long intergenic non-protein coding RNA 1700 ncRNA 161 chr16 1940645 1940924 + 0 NA Intergenic Intergenic -6552 NR_033914 64735 Hs.662737 NR_033914 ENSG00000281219 LINC00254 C16orf32|NCRNA00254 long intergenic non-protein coding RNA 254 ncRNA 190 chr17 75733552 75733611 + 0 NA Intergenic (CATGC)n|Simple_repeat|Simple_repeat -8940 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 298 chr5 303168 303383 + 0 NA intron (NM_001267557, intron 2 of 3) intron (NM_001267557, intron 2 of 3) -1016 NM_020731 57491 Hs.50823 NM_020731 ENSG00000063438 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 95 chr12 125566020 125566675 + 0 NA intron (NM_023928, intron 3 of 17) intron (NM_023928, intron 3 of 17) 16434 NM_001319839 65985 Hs.656073 NM_023928 ENSG00000081760 AACS ACSF1|SUR-5 acetoacetyl-CoA synthetase protein-coding 400 chr9 129200732 129200946 + 0 NA intron (NM_033446, intron 7 of 9) intron (NM_033446, intron 7 of 9) -28056 NR_045006 641373 Hs.742606 NR_045006 NRON NCRNA00194 non-protein coding RNA, repressor of NFAT ncRNA 313 chr5 51787039 51787373 + 0 NA Intergenic Intergenic -296568 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota homolog (Drosophila) protein-coding 20 chr1 207232386 207232582 + 0 NA intron (NM_001018053, intron 2 of 14) intron (NM_001018053, intron 2 of 14) 5864 NM_006212 5208 Hs.282702 NM_006212 ENSG00000123836 PFKFB2 PFK-2/FBPase-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 protein-coding 109 chr13 107862683 107862825 + 0 NA intron (NM_001080396, intron 2 of 2) intron (NM_001080396, intron 2 of 2) 320842 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 231 chr19 13023772 13023825 + 0 NA intron (NM_001105578, intron 2 of 5) intron (NM_001105578, intron 2 of 5) 6288 NM_001105578 256126 Hs.655173 NM_001105578 ENSG00000161860 SYCE2 CESC1 synaptonemal complex central element protein 2 protein-coding 243 chr2 99486257 99486829 + 0 NA intron (NM_207362, intron 1 of 9) intron (NM_207362, intron 1 of 9) 66141 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 151 chr15 60651436 60651706 + 0 NA intron (NM_001002857, intron 6 of 13) intron (NM_001002857, intron 6 of 13) 38614 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 148 chr15 60650918 60651052 + 0 NA intron (NM_001002857, intron 6 of 13) intron (NM_001002857, intron 6 of 13) 39200 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 343 chr6 111873454 111873536 + 0 NA intron (NR_034109, intron 1 of 1) intron (NR_034109, intron 1 of 1) 15068 NM_001164283 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 287 chr4 139818958 139819214 + 0 NA intron (NR_133945, intron 2 of 2) intron (NR_133945, intron 2 of 2) 114714 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 78 chr12 103766676 103766802 + 0 NA intron (NM_001099336, intron 3 of 5) intron (NM_001099336, intron 3 of 5) 123049 NR_103526 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 397 chr9 120162685 120162825 + 0 NA intron (NM_014010, intron 1 of 21) intron (NM_014010, intron 1 of 21) 14562 NM_014010 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 294 chr4 166319827 166319912 + 0 NA intron (NM_001873, intron 1 of 8) intron (NM_001873, intron 1 of 8) 12475 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 349 chr6 124288751 124289214 + 0 NA intron (NM_153355, intron 1 of 5) intron (NM_153355, intron 1 of 5) 163991 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Sodium/potassium transporting ATPase interacting 2 protein-coding 106 chr13 99057364 99057561 + 0 NA intron (NM_005766, intron 13 of 26) intron (NM_005766, intron 13 of 26) 116917 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 275 chr3 183095289 183095579 + 0 NA intron (NM_015078, intron 3 of 29) L2b|LINE|L2 50623 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 157 chr15 74515995 74516232 + 0 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -12517 NM_025055 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 65 chr12 49608952 49609170 + 0 NA Intergenic Intergenic -12648 NM_001303117 84790 Hs.652390 NM_032704 ENSG00000167553 TUBA1C TUBA6|bcm948 tubulin alpha 1c protein-coding 197 chr18 3715365 3716052 + 0 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 111973 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 203 chr18 3726341 3726853 + 0 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 118761 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 261 chr21 38436374 38436602 + 0 NA promoter-TSS (NR_131189) promoter-TSS (NR_131189) -122 NR_131189 105372795 Hs.528019 NR_131189 LOC105372795 - uncharacterized LOC105372795 ncRNA 138 chr14 70163142 70163484 + 0 NA intron (NM_014734, intron 2 of 5) intron (NM_014734, intron 2 of 5) -70491 NM_006925 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 81 chr12 116323459 116323941 + 0 NA Intergenic Intergenic 262759 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 137 chr14 70162812 70163141 + 0 NA intron (NM_014734, intron 2 of 5) MIR|SINE|MIR -70828 NM_006925 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 60 chr12 42313347 42313423 + 0 NA Intergenic Intergenic 155394 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LOC101927038 - uncharacterized LOC101927038 ncRNA 321 chr6 19298465 19298634 + 0 NA Intergenic Intergenic -117838 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 284 chr4 8041212 8041495 + 0 NA intron (NM_001130083, intron 9 of 20) intron (NM_001130083, intron 9 of 20) 32390 NM_001286688 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family member 2 protein-coding 86 chr12 119807822 119808035 + 0 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 35411 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 247 chr2 136899047 136899158 + 0 NA Intergenic Intergenic -23377 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 371 chr7 141116598 141117099 + 0 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) -134230 NM_018238 55750 Hs.743318 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 204 chr18 3726854 3726967 + 0 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 118448 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 289 chr4 139831502 139831521 + 0 NA intron (NR_133945, intron 2 of 2) intron (NR_133945, intron 2 of 2) 102289 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 165 chr16 52586637 52586787 + 0 NA intron (NR_033920, intron 3 of 3) intron (NR_033920, intron 3 of 3) -4998 NM_001146188 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 346 chr6 123065791 123066224 + 0 NA Intergenic HERVE_a-int|LTR|ERV1 -4339 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 17 chr1 206723739 206724075 + 0 NA intron (NM_182664, intron 2 of 4) intron (NM_182664, intron 2 of 4) -6585 NM_182665 83593 Hs.497579 NM_031437 ENSG00000266094 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association domain family member 5 protein-coding 2 chr1 42806166 42806250 + 0 NA Intergenic Intergenic -4660 NM_001198850 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 401 chr9 129200947 129201136 + 0 NA intron (NM_033446, intron 7 of 9) intron (NM_033446, intron 7 of 9) -28258 NR_045006 641373 Hs.742606 NR_045006 NRON NCRNA00194 non-protein coding RNA, repressor of NFAT ncRNA 186 chr17 55129763 55129776 + 0 NA Intergenic FRAM|SINE|Alu 6930 NR_002818 376412 Hs.132299 NR_002818 ENSG00000261192 RNF126P1 - ring finger protein 126 pseudogene 1 pseudo 82 chr12 117549255 117549741 + 0 NA intron (NR_120464, intron 2 of 2) intron (NR_120464, intron 2 of 2) 12226 NR_120464 101928244 Hs.742266 NR_120464 TESC-AS1 - TESC antisense RNA 1 (head to head) ncRNA 110 chr13 107862826 107863058 + 0 NA exon (NM_001080396, exon 2 of 3) exon (NM_001080396, exon 2 of 3) 320654 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 147 chr15 58756629 58756714 + 0 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 32496 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 333 chr6 80519498 80519641 + 0 NA intron (NR_131786, intron 2 of 4) intron (NR_131786, intron 2 of 4) 2394 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 339 chr6 111862491 111862648 + 0 NA intron (NR_034109, intron 1 of 1) intron (NR_034109, intron 1 of 1) 25994 NM_001164283 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 228 chr19 5962424 5962449 + 0 NA intron (NM_003624, intron 1 of 16) L2a|LINE|L2 15884 NM_001300865 8498 Hs.531752 NM_003624 ENSG00000031823 RANBP3 - RAN binding protein 3 protein-coding 323 chr6 20691520 20691912 + 0 NA intron (NM_017774, intron 5 of 15) intron (NM_017774, intron 5 of 15) 157028 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 268 chr21 40329141 40329283 + 0 NA Intergenic Intergenic -18859 NR_120405 400867 Hs.689509 NR_120405 LOC400867 - uncharacterized LOC400867 ncRNA 345 chr6 111873717 111873777 + 0 NA intron (NR_034109, intron 1 of 1) intron (NR_034109, intron 1 of 1) 14816 NM_001164283 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 69 chr12 68743511 68743625 + 0 NA Intergenic Intergenic -17407 NM_020128 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 112 chr13 107863358 107863414 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 320210 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 319 chr6 19297894 19298113 + 0 NA Intergenic Intergenic -117292 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 172 chr16 77484500 77485017 + 0 NA Intergenic Intergenic -15747 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 191 chr17 75734198 75734489 + 0 NA Intergenic MER33|DNA|hAT-Charlie -9702 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 224 chr18 60932140 60932528 + 0 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 54279 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 187 chr17 75731398 75731580 + 0 NA Intergenic Intergenic -6848 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 223 chr18 60931944 60932139 + 0 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 54572 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 282 chr4 8040352 8040828 + 0 NA intron (NM_001130083, intron 9 of 20) intron (NM_001130083, intron 9 of 20) 33153 NM_001286688 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family member 2 protein-coding 262 chr21 38436603 38436887 + 0 NA promoter-TSS (NR_131189) promoter-TSS (NR_131189) -379 NR_131189 105372795 Hs.528019 NR_131189 LOC105372795 - uncharacterized LOC105372795 ncRNA 79 chr12 116322566 116322840 + 0 NA Intergenic Intergenic 263756 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 121 chr13 112332015 112332017 + 0 NA Intergenic (T)n|Simple_repeat|Simple_repeat 83660 NR_135814 105370369 NR_135814 ENSG00000215881 LOC105370369 - uncharacterized LOC105370369 ncRNA 212 chr18 31385462 31385558 + 0 NA Intergenic Intergenic 226969 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding 352 chr7 114299500 114299757 + 0 NA non-coding (NR_033766, exon 16 of 20) non-coding (NR_033766, exon 16 of 20) 6228 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 344 chr6 111873537 111873716 + 0 NA intron (NR_034109, intron 1 of 1) intron (NR_034109, intron 1 of 1) 14937 NM_001164283 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 126 chr14 29685942 29686251 + 0 NA Intergenic Intergenic -431103 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LOC105370424 - uncharacterized LOC105370424 ncRNA 238 chr2 58105480 58105547 + 0 NA Intergenic Intergenic -29273 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - vaccinia related kinase 2 protein-coding 251 chr20 20193102 20193367 + 0 NA intron (NM_015585, intron 17 of 26) intron (NM_015585, intron 17 of 26) -155531 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 369 chr7 130061835 130061958 + 0 NA intron (NM_001257160, intron 2 of 2) intron (NM_001257160, intron 2 of 2) 19155 NM_001257159 95681 Hs.368315 NM_018718 ENSG00000106477 CEP41 JBTS15|TSGA14 centrosomal protein 41 protein-coding 253 chr20 20193534 20193913 + 0 NA intron (NM_015585, intron 17 of 26) intron (NM_015585, intron 17 of 26) -155042 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 279 chr4 8012395 8012653 + 0 NA intron (NM_001130086, intron 11 of 17) intron (NM_001130086, intron 11 of 17) -5416 NR_029511 407052 NR_029511 ENSG00000207807 MIR95 MIRN95|hsa-mir-95|miR-95 microRNA 95 ncRNA 176 chr16 84554851 84555299 + 0 NA Intergenic MIRb|SINE|MIR -16787 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 TLDC1 KIAA1609 TBC/LysM-associated domain containing 1 protein-coding 209 chr18 31383021 31383243 + 0 NA Intergenic Intergenic 224591 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding 357 chr7 129913323 129913436 + 0 NA intron (NM_001869, intron 5 of 10) intron (NM_001869, intron 5 of 10) 6676 NM_001869 1358 Hs.490038 NM_001869 ENSG00000158516 CPA2 - carboxypeptidase A2 protein-coding 216 chr18 45743170 45743422 + 0 NA intron (NM_001318841, intron 2 of 4) MLT1C|LTR|ERVL-MaLR -79616 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 256 chr20 32143077 32143212 + 0 NA intron (NM_001032999, intron 1 of 10) intron (NM_001032999, intron 1 of 10) -7027 NM_001039709 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 translocation partner 2 protein-coding 372 chr7 141117100 141117113 + 0 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) -133972 NM_018238 55750 Hs.743318 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 117 chr13 107881886 107881954 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 301676 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 170 chr16 66369509 66369717 + 0 NA Intergenic MIR|SINE|MIR -30897 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 33 chr10 112554445 112554622 + 0 NA intron (NM_001134363, intron 5 of 13) intron (NM_001134363, intron 5 of 13) 76129 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 63 chr12 42313702 42314728 + 0 NA Intergenic Intergenic 156224 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LOC101927038 - uncharacterized LOC101927038 ncRNA 7 chr1 202933768 202933841 + 0 NA exon (NM_016243, exon 6 of 9) exon (NM_016243, exon 6 of 9) 2600 NM_016243 51706 Hs.334832 NM_016243 ENSG00000159348 CYB5R1 B5R.1|B5R1|B5R2|NQO3A2|humb5R2 cytochrome b5 reductase 1 protein-coding 80 chr12 116322841 116323458 + 0 NA Intergenic Intergenic 263310 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 26 chr10 92970212 92970585 + 0 NA intron (NM_001257101, intron 1 of 9) intron (NM_001257101, intron 1 of 9) -9510 NM_001256549 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 227 chr19 5961971 5962423 + 0 NA intron (NM_003624, intron 1 of 16) intron (NM_003624, intron 1 of 16) 16123 NM_001300865 8498 Hs.531752 NM_003624 ENSG00000031823 RANBP3 - RAN binding protein 3 protein-coding 336 chr6 80520282 80520545 + 0 NA intron (NR_131786, intron 2 of 4) intron (NR_131786, intron 2 of 4) 1550 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 99 chr12 129556176 129556462 + 0 NA TTS (NM_133448) TTS (NM_133448) -37916 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 LOC283352 - uncharacterized LOC283352 ncRNA 72 chr12 68744500 68744651 + 0 NA Intergenic Intergenic -18414 NM_020128 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 179 chr17 32701911 32702086 + 0 NA Intergenic L2a|LINE|L2 -11746 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 383 chr8 81064052 81064117 + 0 NA intron (NR_105035, intron 1 of 6) LTR54B|LTR|ERV1 19351 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 264 chr21 38439551 38439691 + 0 NA exon (NM_001320480, exon 4 of 5) exon (NM_001320480, exon 4 of 5) -3255 NR_131189 105372795 Hs.528019 NR_131189 LOC105372795 - uncharacterized LOC105372795 ncRNA 255 chr20 32142901 32143076 + 0 NA intron (NM_001032999, intron 1 of 10) MER57E1|LTR|ERV1 -7183 NM_001039709 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 translocation partner 2 protein-coding 297 chr5 301308 301757 + 0 NA intron (NM_001267557, intron 2 of 3) intron (NM_001267557, intron 2 of 3) -2759 NM_020731 57491 Hs.50823 NM_020731 ENSG00000063438 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 359 chr7 129992133 129992394 + 0 NA intron (NM_001127441, intron 6 of 13) intron (NM_001127441, intron 6 of 13) 7633 NM_080385 93979 Hs.567642 NM_080385 ENSG00000158525 CPA5 - carboxypeptidase A5 protein-coding 182 chr17 36571901 36572143 + 0 NA Intergenic Intergenic -12698 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 108 chr13 99057793 99058038 + 0 NA intron (NM_005766, intron 13 of 26) intron (NM_005766, intron 13 of 26) 116464 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 277 chr3 183096085 183096302 + 0 NA intron (NM_015078, intron 3 of 29) intron (NM_015078, intron 3 of 29) 49864 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 92 chr12 123616467 123617069 + 0 NA Intergenic Intergenic -21732 NM_001300801 57605 Hs.272759 NM_020845 ENSG00000090975 PITPNM2 NIR-3|NIR3|RDGB2|RDGBA2 phosphatidylinositol transfer protein membrane associated 2 protein-coding 232 chr19 13137274 13137326 + 0 NA intron (NM_001271043, intron 2 of 10) intron (NM_001271043, intron 2 of 10) 1905 NM_001271043 4784 Hs.257970 NM_002501 ENSG00000008441 NFIX CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2 nuclear factor I X protein-coding 10 chr1 202934035 202934071 + 0 NA intron (NM_016243, intron 5 of 8) intron (NM_016243, intron 5 of 8) 2351 NM_016243 51706 Hs.334832 NM_016243 ENSG00000159348 CYB5R1 B5R.1|B5R1|B5R2|NQO3A2|humb5R2 cytochrome b5 reductase 1 protein-coding 225 chr18 60932529 60932594 + 0 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 54052 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 330 chr6 80507372 80507576 + 0 NA Intergenic Intergenic 14489 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 142 chr15 40384425 40384633 + 0 NA intron (NM_001003943, intron 3 of 3) intron (NM_001003943, intron 3 of 3) 13758 NM_001003942 90427 Hs.591104 NM_033503 ENSG00000104081 BMF - Bcl2 modifying factor protein-coding 207 chr18 31382783 31382966 + 0 NA Intergenic Intergenic 224333 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding 263 chr21 38439321 38439550 + 0 NA intron (NM_016430, intron 5 of 5) AluSq2|SINE|Alu -3069 NR_131189 105372795 Hs.528019 NR_131189 LOC105372795 - uncharacterized LOC105372795 ncRNA 394 chr9 92302144 92302347 + 0 NA intron (NR_024280, intron 3 of 5) intron (NR_024280, intron 3 of 5) 47547 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 167 chr16 52586856 52586973 + 0 NA intron (NR_033920, intron 3 of 3) intron (NR_033920, intron 3 of 3) -5200 NM_001146188 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 48 chr11 92949307 92949612 + 0 NA Intergenic Intergenic -18318 NM_152313 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 360 chr7 129992395 129992656 + 0 NA intron (NM_001127441, intron 6 of 13) L2|LINE|L2 7895 NM_080385 93979 Hs.567642 NM_080385 ENSG00000158525 CPA5 - carboxypeptidase A5 protein-coding 133 chr14 61696003 61696246 + 0 NA Intergenic Intergenic 52406 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 290 chr4 139831522 139832022 + 0 NA intron (NR_133945, intron 2 of 2) intron (NR_133945, intron 2 of 2) 102028 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 123 chr13 112332204 112332251 + 0 NA Intergenic Intergenic 83871 NR_135814 105370369 NR_135814 ENSG00000215881 LOC105370369 - uncharacterized LOC105370369 ncRNA 149 chr15 60651053 60651097 + 0 NA intron (NM_001002857, intron 6 of 13) intron (NM_001002857, intron 6 of 13) 39110 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 304 chr5 6453518 6453653 + 0 NA intron (NM_001145161, intron 1 of 1) intron (NM_001145161, intron 1 of 1) 4849 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 50 chr11 92950059 92950257 + 0 NA Intergenic Intergenic -19017 NM_152313 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 210 chr18 31383244 31383267 + 0 NA Intergenic Intergenic 224714 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding 396 chr9 120162581 120162684 + 0 NA intron (NM_014010, intron 1 of 21) intron (NM_014010, intron 1 of 21) 14685 NM_014010 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 258 chr21 36600123 36600285 + 0 NA Intergenic Intergenic -178609 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 173 chr16 77485018 77485173 + 0 NA Intergenic Intergenic -16084 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 393 chr9 92301910 92302143 + 0 NA intron (NR_024280, intron 3 of 5) intron (NR_024280, intron 3 of 5) 47328 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 56 chr12 6482467 6482528 + 0 NA intron (NM_001159576, intron 1 of 11) intron (NM_001159576, intron 1 of 11) 1893 NM_001159576 6337 Hs.591047 NM_001038 ENSG00000111319 SCNN1A BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1 sodium channel epithelial 1 alpha subunit protein-coding 66 chr12 49609171 49609529 + 0 NA Intergenic Intergenic -12359 NM_001303117 84790 Hs.652390 NM_032704 ENSG00000167553 TUBA1C TUBA6|bcm948 tubulin alpha 1c protein-coding 19 chr1 207232033 207232385 + 0 NA intron (NM_001018053, intron 2 of 14) intron (NM_001018053, intron 2 of 14) 5589 NM_006212 5208 Hs.282702 NM_006212 ENSG00000123836 PFKFB2 PFK-2/FBPase-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 protein-coding 293 chr4 166319776 166319826 + 0 NA intron (NM_001873, intron 1 of 8) intron (NM_001873, intron 1 of 8) 12407 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 54 chr11 111180865 111181060 + 0 NA Intergenic Intergenic -5189 NM_001302644 399948 Hs.729225 NM_207429 COLCA1 C11orf92|CASC12|LOH11CR1F colorectal cancer associated 1 protein-coding 365 chr7 130049004 130049298 + 0 NA intron (NM_001257158, intron 5 of 9) intron (NM_001257158, intron 5 of 9) 28939 NM_001868 1357 Hs.2879 NM_001868 ENSG00000091704 CPA1 CPA carboxypeptidase A1 protein-coding 274 chr22 23534243 23534356 + 0 NA intron (NM_021574, intron 1 of 21) intron (NM_021574, intron 1 of 21) 11747 NM_004327 613 Hs.517461 NM_004327 ENSG00000186716 BCR ALL|BCR1|CML|D22S11|D22S662|PHL BCR, RhoGEF and GTPase activating protein protein-coding 306 chr5 38540477 38540557 + 0 NA intron (NM_002310, intron 1 of 19) intron (NM_002310, intron 1 of 19) 16231 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 70 chr12 68744045 68744102 + 0 NA Intergenic Intergenic -17912 NM_020128 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 322 chr6 20691257 20691519 + 0 NA intron (NM_017774, intron 5 of 15) intron (NM_017774, intron 5 of 15) 156700 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 353 chr7 114299758 114300679 + 0 NA intron (NM_148898, intron 14 of 17) intron (NM_148898, intron 14 of 17) 6818 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 166 chr16 52586788 52586855 + 0 NA intron (NR_033920, intron 3 of 3) intron (NR_033920, intron 3 of 3) -5107 NM_001146188 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 375 chr8 5925676 5925775 + 0 NA Intergenic Intergenic 338344 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 88 chr12 122595383 122596114 + 0 NA intron (NM_014938, intron 1 of 16) intron (NM_014938, intron 1 of 16) -56518 NM_152759 254050 Hs.374856 NM_152759 ENSG00000158113 LRRC43 - leucine rich repeat containing 43 protein-coding 30 chr10 105308818 105308979 + 0 NA intron (NM_004210, intron 1 of 5) intron (NM_004210, intron 1 of 5) -31699 NR_120675 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 141 chr14 70181014 70181187 + 0 NA 3' UTR (NM_014734, exon 6 of 6) 3' UTR (NM_014734, exon 6 of 6) -52704 NM_006925 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 128 chr14 36971794 36972151 + 0 NA intron (NR_138596, intron 1 of 4) intron (NR_138596, intron 1 of 4) 11018 NR_138598 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 252 chr20 20193368 20193533 + 0 NA intron (NM_015585, intron 17 of 26) intron (NM_015585, intron 17 of 26) -155315 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 28 chr10 92970607 92970844 + 0 NA intron (NM_001257101, intron 1 of 9) intron (NM_001257101, intron 1 of 9) -9183 NM_001256549 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 310 chr5 51306078 51306339 + 0 NA Intergenic Intergenic -627042 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 283 chr4 8040829 8041211 + 0 NA intron (NM_001130083, intron 9 of 20) intron (NM_001130083, intron 9 of 20) 32723 NM_001286688 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family member 2 protein-coding 75 chr12 103635112 103635248 + 0 NA intron (NR_103526, intron 10 of 10) intron (NR_103526, intron 10 of 10) 89560 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 40 chr11 12341554 12342447 + 0 NA intron (NM_032867, intron 4 of 8) intron (NM_032867, intron 4 of 8) 33553 NM_032867 84953 Hs.128196 NM_032867 ENSG00000133808 MICALCL Ebitein1 MICAL C-terminal like protein-coding 134 chr14 61696247 61696455 + 0 NA Intergenic Intergenic 52179 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 156 chr15 74515855 74515994 + 0 NA Intergenic Intergenic -12706 NM_025055 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 303 chr5 6453293 6453517 + 0 NA intron (NM_001145161, intron 1 of 1) intron (NM_001145161, intron 1 of 1) 4669 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 192 chr17 76390119 76390278 + 0 NA intron (NR_110602, intron 2 of 8) AluSx|SINE|Alu 15499 NM_024419 9489 Hs.654671 NM_024419 ENSG00000087157 PGS1 - phosphatidylglycerophosphate synthase 1 protein-coding 250 chr2 136899420 136899504 + 0 NA Intergenic Intergenic -23737 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 59 chr12 42312430 42313346 + 0 NA Intergenic Intergenic 154897 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LOC101927038 - uncharacterized LOC101927038 ncRNA 215 chr18 45743116 45743169 + 0 NA intron (NM_001318841, intron 2 of 4) intron (NM_001318841, intron 2 of 4) -79462 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 278 chr4 8012260 8012394 + 0 NA intron (NM_001130086, intron 11 of 17) intron (NM_001130086, intron 11 of 17) -5219 NR_029511 407052 NR_029511 ENSG00000207807 MIR95 MIRN95|hsa-mir-95|miR-95 microRNA 95 ncRNA 150 chr15 60651098 60651435 + 0 NA intron (NM_001002857, intron 6 of 13) intron (NM_001002857, intron 6 of 13) 38919 NM_004039 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 271 chr21 40357865 40357988 + 0 NA Intergenic Intergenic -8226 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LINC01700 - long intergenic non-protein coding RNA 1700 ncRNA 130 chr14 61084790 61084967 + 0 NA Intergenic Intergenic -21056 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 155 chr15 74515799 74515854 + 0 NA Intergenic Intergenic -12804 NM_025055 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 387 chr8 81080515 81080623 + 0 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 2866 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 53 chr11 111180742 111180864 + 0 NA Intergenic Intergenic -5030 NM_001302644 399948 Hs.729225 NM_207429 COLCA1 C11orf92|CASC12|LOH11CR1F colorectal cancer associated 1 protein-coding 245 chr2 99526364 99526415 + 0 NA intron (NM_207362, intron 1 of 9) intron (NM_207362, intron 1 of 9) 26295 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 267 chr21 40328668 40329140 + 0 NA Intergenic Intergenic -18551 NR_120405 400867 Hs.689509 NR_120405 LOC400867 - uncharacterized LOC400867 ncRNA 354 chr7 114300680 114300840 + 0 NA intron (NM_148898, intron 14 of 17) intron (NM_148898, intron 14 of 17) 7360 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 219 chr18 45743718 45743871 + 0 NA intron (NM_001318841, intron 2 of 4) intron (NM_001318841, intron 2 of 4) -80114 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 318 chr5 134820430 134820753 + 0 NA Intergenic Intergenic -32502 NM_001099221 497189 Hs.552091 NM_001099221 ENSG00000255833 TIFAB - TIFA inhibitor protein-coding 13 chr1 203289776 203289953 + 0 NA Intergenic Intergenic 15200 NM_006763 7832 Hs.519162 NM_006763 ENSG00000159388 BTG2 APRO1|PC3|TIS21 BTG anti-proliferation factor 2 protein-coding 257 chr21 36599853 36600122 + 0 NA Intergenic MIRb|SINE|MIR -178392 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 105 chr13 99054448 99054844 + 0 NA intron (NM_005766, intron 13 of 26) intron (NM_005766, intron 13 of 26) 119733 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 85 chr12 119807818 119807821 + 0 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 35302 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 3 chr1 42806502 42806593 + 0 NA Intergenic Intergenic -4999 NM_001198850 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 185 chr17 55129434 55129762 + 0 NA Intergenic Intergenic 6759 NR_002818 376412 Hs.132299 NR_002818 ENSG00000261192 RNF126P1 - ring finger protein 126 pseudogene 1 pseudo 390 chr9 2299028 2299606 + 0 NA Intergenic Intergenic 140861 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 332 chr6 80508052 80508299 + 0 NA Intergenic Intergenic 13788 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 248 chr2 136899159 136899359 + 0 NA Intergenic Intergenic -23534 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 111 chr13 107863059 107863357 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 320388 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 9 chr1 202934020 202934034 + 0 NA intron (NM_016243, intron 5 of 8) intron (NM_016243, intron 5 of 8) 2377 NM_016243 51706 Hs.334832 NM_016243 ENSG00000159348 CYB5R1 B5R.1|B5R1|B5R2|NQO3A2|humb5R2 cytochrome b5 reductase 1 protein-coding 146 chr15 58756362 58756628 + 0 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 32320 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 356 chr7 129913108 129913322 + 0 NA intron (NM_001869, intron 5 of 10) intron (NM_001869, intron 5 of 10) 6512 NM_001869 1358 Hs.490038 NM_001869 ENSG00000158516 CPA2 - carboxypeptidase A2 protein-coding 38 chr11 12341291 12341350 + 0 NA exon (NM_032867, exon 4 of 9) exon (NM_032867, exon 4 of 9) 32873 NM_032867 84953 Hs.128196 NM_032867 ENSG00000133808 MICALCL Ebitein1 MICAL C-terminal like protein-coding 4 chr1 42806594 42806949 + 0 NA Intergenic MLT1I|LTR|ERVL-MaLR -5223 NM_001198850 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 34 chr10 112554623 112554835 + 0 NA intron (NM_001134363, intron 5 of 13) intron (NM_001134363, intron 5 of 13) 75933 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 164 chr16 52586491 52586636 + 0 NA intron (NR_033920, intron 3 of 3) intron (NR_033920, intron 3 of 3) -4849 NM_001146188 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 196 chr18 3715270 3715364 + 0 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 111582 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 242 chr2 99485371 99486256 + 0 NA intron (NM_207362, intron 1 of 9) intron (NM_207362, intron 1 of 9) 66871 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding