PeakID (cmd=annotatePeaks.pl TT_K27Ac_hg19_p5_swig_peaks_Gateway_SuperEnhancers.bed hg19) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type 19_MACS_peak_20876_lociStitched chr19 42746094 42789109 + 176 NA Intergenic AluJb|SINE|Alu -8292 NM_006494 2077 Hs.655969 XM_005258643 ENSG00000105722 ERF CRS4|PE-2|PE2 Ets2 repressor factor protein-coding 16_MACS_peak_20733_lociStitched chr19 39164740 39202325 + 175 NA intron (NM_004924, intron 1 of 20) intron (NM_004924, intron 1 of 20) 45265 NM_004924 81 Hs.270291 XM_005259281 ACTN4 ACTININ-4|FSGS|FSGS1 actinin, alpha 4 protein-coding 7_MACS_peak_4753_lociStitched chr10 21805201 21824685 + 174 NA promoter-TSS (NM_207371) promoter-TSS (NM_207371) -332 NM_207371 387640 Hs.350848 XM_005252450 ENSG00000180592 SKIDA1 C10orf140|DLN-1 SKI/DACH domain containing 1 protein-coding 6_MACS_peak_11724_lociStitched chr14 35008181 35026595 + 173 NA Intergenic AluSx|SINE|Alu -8445 NM_018453 55837 Hs.433269 XM_005267858 ENSG00000129518 EAPP BM036|C14orf11 E2F-associated phosphoprotein protein-coding 20_MACS_peak_13603_lociStitched chr15 60662726 60701189 + 172 NA intron (NM_004039, intron 1 of 12) intron (NM_004039, intron 1 of 12) 8228 NM_001002858 302 Hs.511605 XM_005254327 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 20_MACS_peak_16867_lociStitched chr17 17814615 17854888 + 171 NA intron (NM_001033551, intron 1 of 13) MIRb|SINE|MIR 41033 NM_001082968 146691 Hs.462379 XM_005256461 ENSG00000175662 TOM1L2 - target of myb1-like 2 (chicken) protein-coding 6_MACS_peak_11821_lociStitched chr14 37581433 37592569 + 170 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -54230 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 13_MACS_peak_9153_lociStitched chr12 32572036 32600320 + 169 NA Intergenic AluSz6|SINE|Alu -68863 NM_139241 121512 Hs.117835 XM_005253304 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 19_MACS_peak_4221_lociStitched chr1 236066079 236110013 + 168 NA Intergenic Intergenic -41038 NR_102436 1130 Hs.532411 XM_005273027 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 21_MACS_peak_11193_lociStitched chr13 97906190 97933366 + 167 NA intron (NM_144778, intron 1 of 8) intron (NM_144778, intron 1 of 8) 45228 NM_144778 10150 Hs.657347 XM_005254018 ENSG00000139793 MBNL2 MBLL|MBLL39|PRO2032 muscleblind-like splicing regulator 2 protein-coding 13_MACS_peak_23397_lociStitched chr2 122247184 122289792 + 166 NA intron (NM_015282, intron 7 of 38) HAL1|LINE|L1 -19968 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 14_MACS_peak_23388_lociStitched chr2 121683724 121709933 + 165 NA intron (NM_005270, intron 2 of 12) AluSq2|SINE|Alu 141961 NM_005270 2736 Hs.111867 XM_005263640 ENSG00000074047 GLI2 HPE9|THP1|THP2 GLI family zinc finger 2 protein-coding 23_MACS_peak_17521_lociStitched chr17 39927974 39969969 + 164 NA Intergenic Intergenic -6007 NM_021991 3728 Hs.514174 XM_005257313 ENSG00000173801 JUP ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB junction plakoglobin protein-coding 8_MACS_peak_16196_lociStitched chr16 85547154 85561981 + 163 NA Intergenic Intergenic -90462 NM_001134473 23199 Hs.461647 XM_005255859 ENSG00000131149 GSE1 KIAA0182 Gse1 coiled-coil protein protein-coding 6_MACS_peak_9173_lociStitched chr12 33044277 33056349 + 162 NA promoter-TSS (NM_004572) promoter-TSS (NM_004572) -533 NM_001005242 5318 Hs.164384 NM_001005242 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 17_MACS_peak_14037_lociStitched chr15 75917404 75965604 + 161 NA exon (NM_153271, exon 1 of 2) exon (NM_153271, exon 1 of 2) 156 NM_153271 257364 Hs.8705 NM_153271 SNX33 SH3PX3|SH3PXD3C|SNX30 sorting nexin 33 protein-coding 10_MACS_peak_29059_lociStitched chr3 189017446 189043254 + 160 NA intron (NM_198485, intron 5 of 5) intron (NM_198485, intron 5 of 5) -71967 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 RP11-115I8.1 TPRG1 antisense RNA 2 ncRNA 20_MACS_peak_39953_lociStitched chr9 134573706 134615443 + 159 NA intron (NM_005312, intron 1 of 23) Charlie7|DNA|hAT-Charlie -9345 NM_198679 2889 Hs.127897 XM_005272185 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor (GEF) 1 protein-coding 22_MACS_peak_25483_lociStitched chr20 48899117 48951245 + 158 NA intron (NR_034124, intron 2 of 4) intron (NR_034124, intron 2 of 4) 12698 NR_109950 101927586 Hs.637665 XR_244192 ENSG00000233077 RP11-290F20.2 - uncharacterized LOC101927586 ncRNA 14_MACS_peak_29206_lociStitched chr3 193772670 193811936 + 157 NA Intergenic L1ME2|LINE|L1 -61628 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 15_MACS_peak_25776_lociStitched chr20 60925167 60962153 + 156 NA Intergenic Intergenic -1292 NM_005560 3911 Hs.473256 NM_005560 ENSG00000130702 LAMA5 - laminin, alpha 5 protein-coding 15_MACS_peak_16071_lociStitched chr16 81527770 81567883 + 155 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) 18872 NM_030629 80790 Hs.594095 XM_005256179 ENSG00000153815 CMIP TCMIP c-Maf inducing protein protein-coding 16_MACS_peak_2748_lociStitched chr1 156066426 156100760 + 154 NA promoter-TSS (NM_001282626) promoter-TSS (NM_001282626) -868 NM_170707 4000 Hs.733671 NM_001257374 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|PRO1 lamin A/C protein-coding 8_MACS_peak_14159_lociStitched chr15 80860824 80881389 + 153 NA intron (NM_014862, intron 15 of 18) L2b|LINE|L2 -2338 NR_049837 100847042 NR_049837 MIR5572 - microRNA 5572 ncRNA 15_MACS_peak_24195_lociStitched chr2 208102373 208126598 + 152 NA intron (NR_110283, intron 1 of 3) MLT1C|LTR|ERVL-MaLR 4555 NR_110283 101927865 Hs.622883 XR_241391 ENSG00000234902 AC007879.2 AC007879.5 uncharacterized LOC101927865 ncRNA 18_MACS_peak_14438_lociStitched chr15 93340728 93375829 + 151 NA Intergenic Intergenic 19564 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 23_MACS_peak_22086_lociStitched chr2 43629556 43658240 + 150 NA intron (NM_022065, intron 28 of 37) intron (NM_022065, intron 28 of 37) 179215 NM_001083953 63892 Hs.369592 NM_001083953 ENSG00000115970 THADA GITA thyroid adenoma associated protein-coding 12_MACS_peak_33719_lociStitched chr6 41673693 41703420 + 149 NA intron (NM_001167827, intron 1 of 8) MER1A|DNA|hAT-Charlie 13583 NM_001271945 7942 Hs.485360 XM_005249410 ENSG00000112561 TFEB ALPHATFEB|BHLHE35|TCFEB transcription factor EB protein-coding 19_MACS_peak_3833_lociStitched chr1 223887089 223930852 + 148 NA intron (NM_001748, intron 2 of 20) intron (NM_001748, intron 2 of 20) 8851 NM_001748 824 Hs.350899 NM_001146068 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2, (m/II) large subunit protein-coding 16_MACS_peak_19701_lociStitched chr19 1237135 1286594 + 147 NA Intergenic Intergenic -7403 NM_001280 1153 Hs.634522 NM_001280 ENSG00000099622 CIRBP CIRP cold inducible RNA binding protein protein-coding 3_MACS_peak_9015_lociStitched chr12 27483848 27498843 + 146 NA intron (NM_001248003, intron 1 of 14) intron (NM_001248003, intron 1 of 14) 5558 NM_001248002 56938 Hs.445447 NM_001248002 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator-like 2 protein-coding 5_MACS_peak_7602_lociStitched chr11 66102151 66116234 + 145 NA intron (NM_001024957, intron 2 of 9) (TG)n|Simple_repeat|Simple_repeat 3390 NM_015399 25855 Hs.100426 XM_005273883 ENSG00000174744 BRMS1 - breast cancer metastasis suppressor 1 protein-coding 23_MACS_peak_12798_lociStitched chr14 103574996 103627636 + 144 NA intron (NM_006291, intron 10 of 10) L2b|LINE|L2 8652 NM_006291 7127 Hs.736562 XM_005268034 ENSG00000185215 TNFAIP2 B94|EXOC3L3 tumor necrosis factor, alpha-induced protein 2 protein-coding 13_MACS_peak_2580_lociStitched chr1 153485247 153522724 + 143 NA Intergenic L1ME3E|LINE|L1 4732 NM_014624 6277 Hs.275243 NM_014624 ENSG00000197956 S100A6 2A9|5B10|CABP|CACY|PRA S100 calcium binding protein A6 protein-coding 6_MACS_peak_39828_lociStitched chr9 132312636 132335099 + 142 NA Intergenic Intergenic -47296 NM_001286796 28989 Hs.744027 XM_005251936 ENSG00000148335 NTMT1 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NTM1A N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 5_MACS_peak_6552_lociStitched chr11 1845958 1858254 + 141 NA Intergenic Intergenic -3568 NM_138567 90019 Hs.161031 XM_005253216 ENSG00000149043 SYT8 - synaptotagmin VIII protein-coding 14_MACS_peak_33574_lociStitched chr6 37020259 37051856 + 140 NA Intergenic HSMAR2|DNA|TcMar-Mariner 62634 NM_173558 221472 Hs.509664 XM_005248911 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 20_MACS_peak_23010_lociStitched chr2 105988306 106027273 + 139 NA intron (NM_201555, intron 2 of 7) L2c|LINE|L2 7786 NM_001039492 2274 Hs.443687 XM_005263901 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 10_MACS_peak_2683_lociStitched chr1 155085676 155113094 + 138 NA promoter-TSS (NM_182685) promoter-TSS (NM_182685) -964 NM_004428 1942 Hs.516664 XM_005244940 ENSG00000169242 EFNA1 B61|ECKLG|EFL1|EPLG1|LERK-1|LERK1|TNFAIP4 ephrin-A1 protein-coding 14_MACS_peak_38153_lociStitched chr8 133888043 133916792 + 137 NA intron (NM_003235, intron 10 of 47) Charlie7|DNA|hAT-Charlie 23212 NM_003235 7038 Hs.654591 XM_005251035 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 24_MACS_peak_1348_lociStitched chr1 43389271 43434431 + 136 NA intron (NM_006516, intron 1 of 9) intron (NM_006516, intron 1 of 9) -12869 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 RP5-848E13.3 SLC2A1 antisense RNA 1 ncRNA 18_MACS_peak_36694_lociStitched chr8 21946692 21999836 + 135 NA exon (NM_005144, exon 19 of 19) exon (NM_005144, exon 19 of 19) -6332 NM_024815 79873 Hs.745387 NM_024815 NUDT18 MTH3 nudix (nucleoside diphosphate linked moiety X)-type motif 18 protein-coding 10_MACS_peak_14371_lociStitched chr15 90722469 90757557 + 134 NA intron (NM_020210, intron 1 of 14) AluSc8|SINE|Alu -4549 NM_198925 10509 Hs.474935 XM_005254830 ENSG00000185033 SEMA4B SEMAC|SemC sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B protein-coding 10_MACS_peak_11784_lociStitched chr14 37225260 37242067 + 133 NA intron (NM_001171170, intron 3 of 10) intron (NM_001171170, intron 3 of 10) 106890 NM_006194 5083 Hs.609574 XM_005267715 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 27_MACS_peak_35637_lociStitched chr7 73981556 74027900 + 132 NA intron (NM_016328, intron 23 of 26) AluY|SINE|Alu -67263 NM_032999 2969 Hs.743231 XM_005250291 ENSG00000077809 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 22_MACS_peak_36014_lociStitched chr7 98788956 98828809 + 131 NA Intergenic AluSx|SINE|Alu -3793 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 - karyopherin alpha 7 (importin alpha 8) protein-coding 17_MACS_peak_37675_lociStitched chr8 102436250 102473192 + 130 NA Intergenic Intergenic -49947 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|TFCP2L3 grainyhead-like 2 (Drosophila) protein-coding 16_MACS_peak_19176_lociStitched chr18 9638104 9688473 + 129 NA Intergenic MLT1G1|LTR|ERVL-MaLR -44940 NM_006868 11031 Hs.744887 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 16_MACS_peak_7284_lociStitched chr11 61734042 61753602 + 128 NA Intergenic MIRc|SINE|MIR -8690 NM_002032 2495 Hs.645560 XM_005273865 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin, heavy polypeptide 1 protein-coding 6_MACS_peak_2099_lociStitched chr1 115721853 115737905 + 127 NA Intergenic Intergenic -97758 NM_005725 10100 Hs.310458 XM_005270340 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 13_MACS_peak_33824_lociStitched chr6 43020744 43066067 + 126 NA promoter-TSS (NM_152882) promoter-TSS (NM_152882) -601 NM_152882 5754 Hs.90572 NM_001270398 ENSG00000112655 PTK7 CCK-4|CCK4 protein tyrosine kinase 7 protein-coding 15_MACS_peak_35388_lociStitched chr7 47802276 47841287 + 125 NA intron (NM_138295, intron 56 of 56) intron (NM_138295, intron 56 of 56) -13108 NM_025031 80099 Hs.287647 NM_025031 ENSG00000136275 C7orf69 - chromosome 7 open reading frame 69 protein-coding 13_MACS_peak_14600_lociStitched chr15 101251682 101270101 + 124 NA Intergenic L2|LINE|L2 118136 NM_198243 140460 Hs.709044 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 17_MACS_peak_39654_lociStitched chr9 130680696 130744250 + 123 NA intron (NM_001035254, intron 4 of 10) intron (NM_001035254, intron 4 of 10) 520 NM_203305 399665 Hs.535972 XM_005251984 ENSG00000167106 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102, member A protein-coding 25_MACS_peak_21667_lociStitched chr2 20313419 20387368 + 122 NA Intergenic Intergenic 74534 NM_002997 6382 Hs.665958 XM_005262620 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 20_MACS_peak_17967_lociStitched chr17 48104365 48142570 + 121 NA Intergenic Intergenic 9636 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 RP11-1094H24.4 - uncharacterized LOC284080 ncRNA 18_MACS_peak_23083_lociStitched chr2 110447745 110484604 + 120 NA Intergenic AluJb|SINE|Alu -84161 NM_001037866 729540 Hs.645445 XM_005263752 ENSG00000183054 RGPD6 RGP6|RGPD7|RanBP2L1|RanBP2L2 RANBP2-like and GRIP domain containing 6 protein-coding 17_MACS_peak_914_lociStitched chr1 27174965 27226971 + 119 NA Intergenic AluJb|SINE|Alu 11335 NM_006142 2810 Hs.523718 NM_006142 ENSG00000175793 SFN YWHAS stratifin protein-coding 18_MACS_peak_1144_lociStitched chr1 33181391 33229762 + 118 NA Intergenic AluSx|SINE|Alu -1936 NM_020888 57648 Hs.591502 XM_005271073 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 2_MACS_peak_7799_lociStitched chr11 68888287 68899690 + 117 NA Intergenic Intergenic 45042 NR_104161 338694 Hs.564235 XR_247248 ENSG00000261070 RP11-554A11.8 - uncharacterized LOC338694 ncRNA 20_MACS_peak_4461_lociStitched chr10 4973575 5008206 + 116 NA Intergenic PABL_B-int|LTR|ERV1 -14564 NM_001353 1645 Hs.460260 NM_001353 AKR1C1 2-ALPHA-HSD|20-ALPHA-HSD|C9|DD1|DD1/DD2|DDH|DDH1|H-37|HAKRC|HBAB|MBAB aldo-keto reductase family 1, member C1 protein-coding 9_MACS_peak_23909_lociStitched chr2 178126962 178147004 + 115 NA Intergenic Intergenic -7124 NM_006164 4780 Hs.744006 XM_005246620 ENSG00000116044 NFE2L2 NRF2 nuclear factor, erythroid 2-like 2 protein-coding 20_MACS_peak_18183_lociStitched chr17 57904078 57932006 + 114 NA promoter-TSS (NR_029493) promoter-TSS (NR_029493) -585 NR_029493 406991 Hs.444569 NR_029493 ENSG00000199004 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 31_MACS_peak_26191_lociStitched chr21 45005424 45032319 + 113 NA intron (NM_007031, intron 7 of 8) MER58B|DNA|hAT-Charlie 10999 NR_106718 102464825 NR_106718 MIR6070 hsa-mir-6070 microRNA mir-6070 ncRNA 14_MACS_peak_8622_lociStitched chr12 6419790 6455813 + 112 NA TTS (NM_001065) TTS (NM_001065) 13482 NM_001065 7132 Hs.279594 XM_005253758 ENSG00000067182 TNFRSF1A CD120a|FPF|MS5|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR1-d2|TNFR55|TNFR60|p55|p55-R|p60 tumor necrosis factor receptor superfamily, member 1A protein-coding 11_MACS_peak_38074_lociStitched chr8 128860925 128889189 + 111 NA Intergenic L1M5|LINE|L1 -27817 NR_003367 5820 Hs.675281 NR_003367 ENSG00000249859 PVT1 LINC00079|NCRNA00079 Pvt1 oncogene (non-protein coding) ncRNA 12_MACS_peak_8606_lociStitched chr12 6380366 6404955 + 110 NA Intergenic L1MB2|LINE|L1 -26942 NM_018173 55200 Hs.631660 XM_005253704 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology domain containing, family G (with RhoGef domain) member 6 protein-coding 18_MACS_peak_12459_lociStitched chr14 77470872 77513156 + 109 NA exon (NM_024496, exon 1 of 1) exon (NM_024496, exon 1 of 1) 3028 NM_024496 64207 Hs.745194 NM_024496 ENSG00000119669 IRF2BPL C14orf4|EAP1 interferon regulatory factor 2 binding protein-like protein-coding 13_MACS_peak_20191_lociStitched chr19 12885954 12918007 + 108 NA promoter-TSS (NM_002229) promoter-TSS (NM_002229) -330 NM_002229 3726 Hs.25292 NM_002229 ENSG00000171223 JUNB AP-1 jun B proto-oncogene protein-coding 10_MACS_peak_29184_lociStitched chr3 193586055 193614232 + 107 NA Intergenic LTR88b|LTR|Gypsy? 111884 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 5_MACS_peak_34888_lociStitched chr7 5459041 5470689 + 106 NA Intergenic CpG-23978 -1688 NM_001080495 84629 Hs.520638 NM_001080495 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 24_MACS_peak_3358_lociStitched chr1 201976171 202033827 + 105 NA Intergenic Intergenic 25309 NM_001114309 1999 Hs.603657 XM_005244942 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74-like factor 3 (ets domain transcription factor, epithelial-specific ) protein-coding 11_MACS_peak_28763_lociStitched chr3 177306642 177322050 + 104 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 154637 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 RP11-335L9.1 long intergenic non-protein coding RNA 578 ncRNA 12_MACS_peak_31545_lociStitched chr5 132614334 132641046 + 103 NA intron (NM_015082, intron 6 of 15) intron (NM_015082, intron 6 of 15) 135708 NR_031621 100302134 NR_031621 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 21_MACS_peak_37469_lociStitched chr8 96073156 96128518 + 102 NA Intergenic Intergenic -15613 NR_037484 100500907 NR_037484 ENSG00000245080 MIR3150B - microRNA 3150b ncRNA 12_MACS_peak_8640_lociStitched chr12 6472573 6494782 + 101 NA promoter-TSS (NM_001270987) promoter-TSS (NM_001270987) 713 NM_001159576 6337 Hs.591047 XM_005253728 ENSG00000111319 SCNN1A BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1 sodium channel, non-voltage-gated 1 alpha subunit protein-coding 25_MACS_peak_394_lociStitched chr1 15650317 15693385 + 100 NA intron (NM_052929, intron 16 of 30) intron (NM_052929, intron 16 of 30) -64540 NM_024329 79180 Hs.465374 XM_005246000 ENSG00000142634 EFHD2 SWS1 EF-hand domain family, member D2 protein-coding 10_MACS_peak_23469_lociStitched chr2 129119544 129138634 + 99 NA Intergenic Intergenic -52918 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 13_MACS_peak_9126_lociStitched chr12 31358033 31399474 + 98 NA Intergenic Intergenic -98497 NR_026806 79857 Hs.534485 NM_024799 ENSG00000177340 FLJ13224 - uncharacterized LOC79857 ncRNA 10_MACS_peak_29047_lociStitched chr3 188986444 189001807 + 97 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -35742 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 RP11-115I8.1 TPRG1 antisense RNA 2 ncRNA 21_MACS_peak_3910_lociStitched chr1 225923484 225966485 + 96 NA Intergenic MER104|DNA|TcMar-Tc2 -20531 NM_003133 6726 Hs.706900 NM_001130440 ENSG00000143742 SRP9 ALURBP signal recognition particle 9kDa protein-coding 18_MACS_peak_2639_lociStitched chr1 154377333 154406517 + 95 NA intron (NM_000565, intron 1 of 9) intron (NM_000565, intron 1 of 9) 14256 NM_181359 3570 Hs.135087 XM_005245138 ENSG00000160712 IL6R CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80 interleukin 6 receptor protein-coding 10_MACS_peak_17078_lociStitched chr17 27037615 27074745 + 94 NA intron (NM_178170, intron 1 of 14) L2a|LINE|L2 348 NM_178170 284086 Hs.448468 XM_005257966 NEK8 JCK|NEK12A|NPHP9|RHPD2 NIMA-related kinase 8 protein-coding 16_MACS_peak_22885_lociStitched chr2 97522752 97565341 + 93 NA intron (NM_001172667, intron 3 of 4) intron (NM_001172667, intron 3 of 4) -8311 NM_017789 54910 Hs.516220 XM_005263972 ENSG00000168758 SEMA4C M-SEMA-F|SEMACL1|SEMAF|SEMAI sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C protein-coding 25_MACS_peak_5453_lociStitched chr10 74052198 74096789 + 92 NA Intergenic AluSq|SINE|Alu 40414 NM_001002762 54788 Hs.500013 XM_005269931 ENSG00000148719 DNAJB12 DJ10 DnaJ (Hsp40) homolog, subfamily B, member 12 protein-coding 7_MACS_peak_7846_lociStitched chr11 69778747 69809120 + 91 NA Intergenic Intergenic 127521 NR_103835 100009613 Hs.743025 XR_247176 ANO1-AS2 C11orf78|NCRNA00224|RP11-626H12.4 ANO1 antisense RNA 2 (head to head) ncRNA 20_MACS_peak_7651_lociStitched chr11 66603226 66675370 + 90 NA exon (NM_001040716, exon 5 of 23) exon (NM_001040716, exon 5 of 23) 14422 NM_024036 78999 Hs.714189 XM_005274239 ENSG00000173621 LRFN4 FIGLER6|SALM3|SALM3. leucine rich repeat and fibronectin type III domain containing 4 protein-coding 13_MACS_peak_2393_lociStitched chr1 149802532 149834613 + 89 NA Intergenic MLT1D|LTR|ERVL-MaLR 3768 NR_036461 337873 Hs.666643 NR_036461 ENSG00000203819 HIST2H2BC H2B/t|HIST2H2BD histone cluster 2, H2bc (pseudogene) pseudo 1_MACS_peak_19069_lociStitched chr18 3345400 3353518 + 88 NA Intergenic AluSx|SINE|Alu -62466 NM_174886 7050 Hs.373550 XM_005258134 ENSG00000177426 TGIF1 HPE4|TGIF TGFB-induced factor homeobox 1 protein-coding 21_MACS_peak_20595_lociStitched chr19 35579066 35614845 + 87 NA intron (NR_024562, intron 1 of 3) (CCA)n|Simple_repeat|Simple_repeat 220 NR_024561 100128675 Hs.633989 XR_243883 ENSG00000227392 HPN-AS1 - HPN antisense RNA 1 ncRNA 26_MACS_peak_29403_lociStitched chr3 197182928 197244656 + 86 NA Intergenic Intergenic 69066 NM_203314 622 Hs.274539 XM_005269352 ENSG00000161267 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase, type 1 protein-coding 17_MACS_peak_35445_lociStitched chr7 55168192 55203165 + 85 NA intron (NM_201282, intron 1 of 15) intron (NM_201282, intron 1 of 15) 70964 NR_047551 100507500 Hs.720489 NR_047551 ENSG00000224057 EGFR-AS1 - EGFR antisense RNA 1 ncRNA 17_MACS_peak_17789_lociStitched chr17 43200364 43261790 + 84 NA Intergenic AluJb|SINE|Alu 6393 NM_006460 10614 Hs.745252 NM_006460 ENSG00000186834 HEXIM1 CLP1|EDG1|HIS1|MAQ1 hexamethylene bis-acetamide inducible 1 protein-coding 14_MACS_peak_28424_lociStitched chr3 151018770 151046760 + 83 NA intron (NM_023915, intron 1 of 2) MIR3|SINE|MIR 1871 NM_023915 53836 Hs.591292 NM_023915 ENSG00000138271 GPR87 GPR95|KPG_002 G protein-coupled receptor 87 protein-coding 26_MACS_peak_26136_lociStitched chr21 44897370 44942625 + 82 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -21894 NR_026863 114038 Hs.592161 NR_026863 ENSG00000185186 LINC00313 C21orf84|NCRNA00313 long intergenic non-protein coding RNA 313 ncRNA 6_MACS_peak_7805_lociStitched chr11 69048221 69071163 + 81 NA Intergenic Intergenic -1930 NM_138768 26579 Hs.523848 XM_005273905 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 27_MACS_peak_13146_lociStitched chr15 40354653 40401855 + 80 NA Intergenic MLT1F2|LTR|ERVL-MaLR 20033 NM_001003942 90427 Hs.591104 XM_005254757 ENSG00000104081 BMF - Bcl2 modifying factor protein-coding 15_MACS_peak_2178_lociStitched chr1 117199597 117240058 + 79 NA Intergenic L2c|LINE|L2 5456 NR_031564 100302117 NR_031564 ENSG00000211543 MIR320B1 MIR320B-1|MIRN320B1|hsa-mir-320b-1 microRNA 320b-1 ncRNA 5_MACS_peak_9074_lociStitched chr12 28176203 28190270 + 78 NA Intergenic L1PA11|LINE|L1 -58320 NM_198965 5744 Hs.591159 XM_005253433 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone-like hormone protein-coding 20_MACS_peak_13504_lociStitched chr15 58724443 58778767 + 77 NA intron (NM_000236, intron 1 of 8) intron (NM_000236, intron 1 of 8) 27430 NM_000236 3990 Hs.654472 XM_005254372 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase, hepatic protein-coding 26_MACS_peak_18543_lociStitched chr17 73074061 73150605 + 76 NA intron (NM_024585, intron 2 of 2) intron (NM_024585, intron 2 of 2) 6251 NM_024585 79637 Hs.413047 XM_005257667 ENSG00000125449 ARMC7 - armadillo repeat containing 7 protein-coding 17_MACS_peak_37711_lociStitched chr8 103733602 103781372 + 75 NA Intergenic Intergenic -89357 NM_005655 7071 Hs.435001 NM_001032282 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel-like factor 10 protein-coding 29_MACS_peak_14540_lociStitched chr15 99394744 99450716 + 74 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 95075 NR_039864 100616432 NR_039864 MIR4714 - microRNA 4714 ncRNA 30_MACS_peak_3137_lociStitched chr1 181042436 181110870 + 73 NA Intergenic Intergenic 19015 NM_016545 51278 Hs.15725 NM_016545 ENSG00000162783 IER5 SBBI48 immediate early response 5 protein-coding 12_MACS_peak_40037_lociStitched chr9 136734164 136755615 + 72 NA intron (NM_001134398, intron 2 of 29) intron (NM_001134398, intron 2 of 29) 112557 NM_003371 7410 Hs.689325 XM_005272213 ENSG00000160293 VAV2 VAV-2 vav 2 guanine nucleotide exchange factor protein-coding 15_MACS_peak_7754_lociStitched chr11 67770754 67808274 + 71 NA intron (NM_001030010, intron 6 of 8) intron (NM_001030010, intron 6 of 8) -8570 NM_002496 4728 Hs.90443 XM_005274013 ENSG00000110717 NDUFS8 CI-23k|CI23KD|TYKY NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) protein-coding 27_MACS_peak_35364_lociStitched chr7 47596590 47650586 + 70 NA Intergenic Intergenic -1846 NM_022748 64759 Hs.520814 XM_005249823 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 8_MACS_peak_7695_lociStitched chr11 67055240 67085376 + 69 NA promoter-TSS (NM_017857) promoter-TSS (NM_017857) -611 NM_017857 54961 Hs.29173 XM_005274070 ENSG00000172830 SSH3 SSH3L slingshot protein phosphatase 3 protein-coding 25_MACS_peak_3304_lociStitched chr1 201228534 201281786 + 68 NA intron (NM_001005337, intron 1 of 13) intron (NM_001005337, intron 1 of 13) 2580 NM_000299 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 (ectodermal dysplasia/skin fragility syndrome) protein-coding 28_MACS_peak_24960_lociStitched chr20 23098571 23148199 + 67 NA Intergenic Intergenic -10112 NR_034149 200261 Hs.352228 NM_182535 ENSG00000233746 LINC00656 RP4-737E23.4 long intergenic non-protein coding RNA 656 ncRNA 5_MACS_peak_11754_lociStitched chr14 35800296 35812246 + 66 NA Intergenic Intergenic 44748 NM_002791 5687 Hs.446260 XM_005267868 ENSG00000100902 PSMA6 IOTA|PROS27|p27K proteasome (prosome, macropain) subunit, alpha type, 6 protein-coding 11_MACS_peak_37733_lociStitched chr8 103794299 103826853 + 65 NA Intergenic Intergenic 65821 NM_148174 51582 Hs.459106 XM_005250967 ENSG00000155096 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 25_MACS_peak_956_lociStitched chr1 27830285 27870247 + 64 NA Intergenic Intergenic -33588 NM_001201404 10163 Hs.469244 NM_001201404 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WAS protein family, member 2 protein-coding 18_MACS_peak_28668_lociStitched chr3 172255143 172283548 + 63 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -28048 NM_001190942 8743 Hs.478275 NM_001190942 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TRAIL tumor necrosis factor (ligand) superfamily, member 10 protein-coding 16_MACS_peak_15582_lociStitched chr16 57651356 57687960 + 62 NA intron (NM_001145772, intron 1 of 14) intron (NM_001145772, intron 1 of 14) -3549 NM_001145774 9289 Hs.513633 XM_005256237 ENSG00000205336 GPR56 BFPP|TM7LN4|TM7XN1 G protein-coupled receptor 56 protein-coding 29_MACS_peak_4018_lociStitched chr1 228744033 228784256 + 61 NA Intergenic CpG -16250 NR_037962 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|DJ646B12.2|WRCH1|fJ646B12.2|hG28K ras homolog family member U protein-coding 2_MACS_peak_7834_lociStitched chr11 69451339 69459667 + 60 NA promoter-TSS (NM_053056) promoter-TSS (NM_053056) -370 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 17_MACS_peak_23564_lociStitched chr2 131555047 131595750 + 59 NA Intergenic Intergenic 61534 NM_001105195 205147 Hs.369289 NM_001105193 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 18_MACS_peak_33167_lociStitched chr6 27830789 27871034 + 58 NA Intergenic MER41A|LTR|ERV1 7659 NM_003535 8356 Hs.484990 NM_003535 ENSG00000197153 HIST1H3J H3/j|H3FJ histone cluster 1, H3j protein-coding 23_MACS_peak_5524_lociStitched chr10 75634713 75701452 + 57 NA Intergenic Intergenic -2780 NM_001145031 5328 Hs.77274 XM_005269901 ENSG00000122861 PLAU ATF|BDPLT5|QPD|UPA|URK|u-PA plasminogen activator, urokinase protein-coding 12_MACS_peak_7705_lociStitched chr11 67138890 67171178 + 56 NA non-coding (NR_024469, exon 3 of 4) non-coding (NR_024469, exon 3 of 4) -4389 NM_004584 5883 Hs.655354 NM_001243224 ENSG00000172613 RAD9A RAD9 RAD9 homolog A (S. pombe) protein-coding 27_MACS_peak_4179_lociStitched chr1 235091227 235164050 + 55 NA Intergenic AluSp|SINE|Alu 163614 NR_002956 677802 Hs.744743 NR_002956 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 30_MACS_peak_32973_lociStitched chr6 26016062 26066808 + 54 NA Intergenic Intergenic 2450 NM_021062 3018 Hs.553494 NM_021062 ENSG00000196226 HIST1H2BB H2B.1|H2B/f|H2BFF histone cluster 1, H2bb protein-coding 21_MACS_peak_38206_lociStitched chr8 134331987 134389525 + 53 NA Intergenic Intergenic -51209 NM_006096 10397 Hs.618002 XM_005250753 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 22_MACS_peak_31991_lociStitched chr5 149642845 149704488 + 52 NA Intergenic Intergenic -4263 NM_171825 815 Hs.743976 NM_015981 ENSG00000070808 CAMK2A CAMKA calcium/calmodulin-dependent protein kinase II alpha protein-coding 29_MACS_peak_33141_lociStitched chr6 27774324 27808107 + 51 NA promoter-TSS (NM_021968) promoter-TSS (NM_021968) -688 NM_021968 8363 Hs.278483 NM_021968 ENSG00000197238 HIST1H4J H4/e|H4F2iv|H4FE|dJ160A22.2 histone cluster 1, H4j protein-coding 38_MACS_peak_17412_lociStitched chr17 38639471 38716675 + 50 NA Intergenic Intergenic -20219 NM_032865 84951 Hs.438292 XM_005257743 ENSG00000131746 TNS4 CTEN tensin 4 protein-coding 27_MACS_peak_8577_lociStitched chr12 6172676 6234591 + 49 NA intron (NM_000552, intron 6 of 51) intron (NM_000552, intron 6 of 51) 30203 NM_000552 7450 Hs.440848 NM_000552 ENSG00000110799 VWF F8VWF|VWD von Willebrand factor protein-coding 40_MACS_peak_26037_lociStitched chr21 43032361 43106397 + 48 NA Intergenic AluJb|SINE|Alu -30083 NR_024367 54090 Hs.570442 NR_024367 LINC00111 C21orf21|NCRNA00111 long intergenic non-protein coding RNA 111 ncRNA 14_MACS_peak_39058_lociStitched chr9 97850084 97889317 + 47 NA intron (NM_001243743, intron 13 of 14) intron (NM_001243743, intron 13 of 14) -21324 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 - microRNA 3074 ncRNA 2_MACS_peak_19082_lociStitched chr18 3785254 3795633 + 46 NA intron (NM_001003809, intron 2 of 9) AluJo|SINE|Alu 54915 NM_001242766 9229 Hs.654793 XM_005258171 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|GKAP|SAPAP1|hGKAP discs, large (Drosophila) homolog-associated protein 1 protein-coding 10_MACS_peak_9517_lociStitched chr12 53253542 53274506 + 45 NA Intergenic MIRb|SINE|MIR -21246 NM_173352 196374 Hs.665267 XM_005268695 ENSG00000170423 KRT78 K5B|Kb40 keratin 78 protein-coding 30_MACS_peak_38979_lociStitched chr9 97543073 97584638 + 44 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) -8389 NR_031755 100313780 NR_031755 MIR2278 - microRNA 2278 ncRNA 7_MACS_peak_29131_lociStitched chr3 189652602 189669954 + 43 NA Intergenic Intergenic 113567 NR_030642 100126340 NR_030642 MIR944 MIRN944|hsa-mir-944 microRNA 944 ncRNA 8_MACS_peak_7820_lociStitched chr11 69229726 69259138 + 42 NA Intergenic Intergenic 182810 NM_138768 26579 Hs.523848 XM_005273905 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 35_MACS_peak_17451_lociStitched chr17 39645015 39705762 + 41 NA promoter-TSS (NM_002275) promoter-TSS (NM_002275) -118 NM_002275 3866 Hs.654570 XM_005257345 ENSG00000171346 KRT15 CK15|K15|K1CO keratin 15 protein-coding 30_MACS_peak_12439_lociStitched chr14 77379659 77444521 + 40 NA Intergenic AluY|SINE|Alu 82952 NM_024496 64207 Hs.745194 NM_024496 ENSG00000119669 IRF2BPL C14orf4|EAP1 interferon regulatory factor 2 binding protein-like protein-coding 19_MACS_peak_39745_lociStitched chr9 131643816 131710792 + 39 NA intron (NM_019594, intron 3 of 3) MIR|SINE|MIR -5870 NM_174933 254295 Hs.709447 XM_005251874 ENSG00000175287 PHYHD1 - phytanoyl-CoA dioxygenase domain containing 1 protein-coding 1_MACS_peak_19074_lociStitched chr18 3507727 3516375 + 38 NA intron (NM_001003809, intron 7 of 9) intron (NM_001003809, intron 7 of 9) 58279 NM_173211 7050 Hs.373550 XM_005258134 ENSG00000177426 TGIF1 HPE4|TGIF TGFB-induced factor homeobox 1 protein-coding 8_MACS_peak_2111_lociStitched chr1 116184090 116222927 + 37 NA intron (NM_138959, intron 3 of 7) intron (NM_138959, intron 3 of 7) 18258 NM_001172412 81839 Hs.515130 NM_001172411 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 30_MACS_peak_18179_lociStitched chr17 57826684 57880596 + 36 NA intron (NM_030938, intron 7 of 11) intron (NM_030938, intron 7 of 11) -64987 NR_029493 406991 Hs.444569 NR_029493 ENSG00000199004 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 22_MACS_peak_31537_lociStitched chr5 132557214 132586427 + 35 NA intron (NM_015082, intron 7 of 15) intron (NM_015082, intron 7 of 15) 184158 NM_002154 3308 Hs.90093 NM_198431 HSPA4 APG-2|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock 70kDa protein 4 protein-coding 24_MACS_peak_31610_lociStitched chr5 133816676 133864706 + 34 NA Intergenic Intergenic -1552 NR_105045 101927934 Hs.535775 XR_246589 ENSG00000251169 LOC101927934 - uncharacterized LOC101927934 ncRNA 16_MACS_peak_11817_lociStitched chr14 37437157 37466659 + 33 NA intron (NM_001171170, intron 1 of 10) AluSx|SINE|Alu -30312 NR_039725 100616280 NR_039725 MIR4503 - microRNA 4503 ncRNA 14_MACS_peak_7519_lociStitched chr11 65238713 65275572 + 32 NA Intergenic Intergenic -8091 NR_002819 378938 Hs.642877 XR_247199 ENSG00000251562 MALAT1 HCN|LINC00047|MALAT-1|NCRNA00047|NEAT2|PRO2853|mascRNA metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 11_MACS_peak_34057_lociStitched chr6 53463240 53494985 + 31 NA Intergenic LTR8A|LTR|ERV1 51394 NM_001003760 401265 Hs.131064 XM_005249107 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch-like family member 31 protein-coding 4_MACS_peak_19064_lociStitched chr18 3281584 3306897 + 30 NA Intergenic Intergenic 31523 NM_001144945 103910 Hs.464472 XM_005258075 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin, light chain 12B, regulatory protein-coding 29_MACS_peak_2542_lociStitched chr1 151941573 152023699 + 29 NA Intergenic L1MB8|LINE|L1 -8118 NR_103561 441908 Hs.656557 NR_103561 NBPF18P AL591893.1 neuroblastoma breakpoint family, member 18, pseudogene pseudo 51_MACS_peak_33036_lociStitched chr6 26172104 26252958 + 28 NA Intergenic Intergenic 4341 NM_003518 8339 Hs.591809 NM_003518 ENSG00000187990 HIST1H2BG H2B.1A|H2B/a|H2BFA|dJ221C16.8 histone cluster 1, H2bg protein-coding 18_MACS_peak_40070_lociStitched chr9 137246455 137277476 + 27 NA intron (NM_002957, intron 1 of 9) intron (NM_002957, intron 1 of 9) -9292 NR_039816 100616236 NR_039816 MIR4669 - microRNA 4669 ncRNA 26_MACS_peak_22505_lociStitched chr2 70307807 70374872 + 26 NA Intergenic Intergenic 11109 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LOC100133985 - uncharacterized LOC100133985 ncRNA 25_MACS_peak_6730_lociStitched chr11 9818155 9863782 + 25 NA intron (NM_030962, intron 28 of 39) intron (NM_030962, intron 28 of 39) -59888 NR_033972 440028 Hs.677541 XR_242804 ENSG00000245522 RP11-540A21.2 - uncharacterized LOC440028 ncRNA 3_MACS_peak_19072_lociStitched chr18 3396450 3413444 + 24 NA Intergenic AluSx|SINE|Alu -6978 NM_174886 7050 Hs.373550 XM_005258134 ENSG00000177426 TGIF1 HPE4|TGIF TGFB-induced factor homeobox 1 protein-coding 27_MACS_peak_8584_lociStitched chr12 6275964 6345525 + 23 NA intron (NM_001769, intron 1 of 7) intron (NM_001769, intron 1 of 7) 1262 NM_001769 928 Hs.712104 XM_005253814 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 28_MACS_peak_25053_lociStitched chr20 30147813 30200863 + 22 NA Intergenic Intergenic -13272 NR_046853 100874042 Hs.743198 NR_046853 ENSG00000230613 HM13-AS1 RP3-324O17.2 HM13 antisense RNA 1 ncRNA 17_MACS_peak_15890_lociStitched chr16 70715841 70750936 + 21 NA intron (NM_018052, intron 14 of 18) MIR3|SINE|MIR -13434 NM_138383 92154 Hs.432387 XM_005256236 ENSG00000132613 MTSS1L ABBA-1 metastasis suppressor 1-like protein-coding 11_MACS_peak_6695_lociStitched chr11 9769277 9797213 + 20 NA intron (NR_036485, intron 1 of 2) MLT1M|LTR|ERVL-MaLR -2165 NR_033972 440028 Hs.677541 XR_242804 ENSG00000245522 RP11-540A21.2 - uncharacterized LOC440028 ncRNA 47_MACS_peak_24540_lociStitched chr2 237588688 237687279 + 19 NA Intergenic Intergenic 159603 NM_020311 57007 Hs.471751 XM_005246097 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 18_MACS_peak_32077_lociStitched chr5 150991425 151031751 + 18 NA Intergenic Intergenic -44918 NR_109873 101927096 Hs.571023 XR_245878 ENSG00000249035 CTB-113P19.1 - uncharacterized LOC101927096 ncRNA 8_MACS_peak_7863_lociStitched chr11 69968565 70008207 + 17 NA intron (NM_018043, intron 11 of 25) intron (NM_018043, intron 11 of 25) 56870 NR_030691 55107 Hs.503074 NM_018043 ENSG00000131620 ANO1 DOG1|ORAOV2|TAOS2|TMEM16A anoctamin 1, calcium activated chloride channel protein-coding 32_MACS_peak_16256_lociStitched chr16 87799542 87906066 + 16 NA Intergenic Intergenic 15462 NR_106833 102465464 NR_106833 MIR6775 hsa-mir-6775 microRNA mir-6775 ncRNA 23_MACS_peak_17490_lociStitched chr17 39769312 39846132 + 15 NA Intergenic Intergenic -11271 NR_033415 284116 Hs.725790 NR_033415 ENSG00000214514 KRT42P - keratin 42 pseudogene pseudo 34_MACS_peak_39816_lociStitched chr9 132220607 132271395 + 14 NA Intergenic Intergenic -4938 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 - long intergenic non-protein coding RNA 963 ncRNA 49_MACS_peak_12144_lociStitched chr14 61928684 62040576 + 13 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) -52628 NR_039985 400221 Hs.344000 NR_039985 ENSG00000232774 FLJ22447 - uncharacterized LOC400221 ncRNA 8_MACS_peak_7853_lociStitched chr11 69905353 69939216 + 12 NA promoter-TSS (NR_103835) promoter-TSS (NR_103835) -830 NR_103835 100009613 Hs.743025 XR_247176 ANO1-AS2 C11orf78|NCRNA00224|RP11-626H12.4 ANO1 antisense RNA 2 (head to head) ncRNA 37_MACS_peak_9483_lociStitched chr12 52536828 52627922 + 11 NA intron (NM_182507, intron 1 of 8) intron (NM_182507, intron 1 of 8) 3409 NM_182507 144501 Hs.140978 XM_005268675 ENSG00000167767 KRT80 KB20 keratin 80 protein-coding 55_MACS_peak_39005_lociStitched chr9 97618564 97716976 + 10 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 95526 NR_031755 100313780 NR_031755 MIR2278 - microRNA 2278 ncRNA 51_MACS_peak_4545_lociStitched chr10 5566069 5665198 + 9 NA Intergenic Intergenic 48709 NM_005185 810 Hs.239600 XM_005252613 ENSG00000178363 CALML3 CLP calmodulin-like 3 protein-coding 14_MACS_peak_9058_lociStitched chr12 28118089 28155249 + 8 NA Intergenic L1PB2|LINE|L1 -11753 NM_198965 5744 Hs.591159 XM_005253433 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone-like hormone protein-coding 51_MACS_peak_37628_lociStitched chr8 102054208 102172522 + 7 NA Intergenic L2a|LINE|L2 49083 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 RP11-302J23.1 uncharacterized LOC441374 ncRNA 42_MACS_peak_3640_lociStitched chr1 209527469 209609253 + 6 NA Intergenic Intergenic -33807 NM_001104548 642587 Hs.510543 XM_005273225 MIR205HG LINC00510 MIR205 host gene (non-protein coding) protein-coding 1_MACS_peak_19073_lociStitched chr18 3445749 3455521 + 5 NA promoter-TSS (NM_170695) promoter-TSS (NM_170695) 465 NM_003244 7050 Hs.373550 XM_005258134 ENSG00000177426 TGIF1 HPE4|TGIF TGFB-induced factor homeobox 1 protein-coding 3_MACS_peak_19061_lociStitched chr18 3245125 3264229 + 4 NA intron (NM_006471, intron 3 of 3) MIRb|SINE|MIR 7149 NM_006471 10627 Hs.190086 XM_005258076 ENSG00000101608 MYL12A HEL-S-24|MLCB|MRCL3|MRLC3|MYL2B myosin, light chain 12A, regulatory, non-sarcomeric protein-coding 34_MACS_peak_9052_lociStitched chr12 27675839 27788207 + 3 NA intron (NM_001198915, intron 2 of 26) intron (NM_001198915, intron 2 of 26) 54978 NM_001198916 8496 Hs.172445 XM_005253505 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PTPRF interacting protein, binding protein 1 (liprin beta 1) protein-coding 3_MACS_peak_19080_lociStitched chr18 3648504 3681914 + 2 NA intron (NM_001242766, intron 4 of 10) intron (NM_001242766, intron 4 of 10) 71097 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914|RP11-874J12.2 DLGAP1 antisense RNA 1 ncRNA 3_MACS_peak_19076_lociStitched chr18 3579528 3634032 + 1 NA intron (NM_001003809, intron 4 of 9) intron (NM_001003809, intron 4 of 9) 12668 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914|RP11-874J12.2 DLGAP1 antisense RNA 1 ncRNA