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├── [ 158 03-Oct-2019 10:28] 9778a_ab4729_chip_0128_13c_S21_hg19_p5_tss_quant_cut.txt
├── [ 67 03-Oct-2019 10:28] all_tss_quant_cut_qnorm.tsv
├── [ 61 03-Oct-2019 10:28] all_tss_quant_cut.tsv
├── [ 72 03-Oct-2019 10:28] fimo.tsv
├── [ 78 03-Oct-2019 10:28] gene_exp.diff
├── [ 80 03-Oct-2019 10:28] heatmap_regions_1kb_homer_quant_wig.bed
├── [ 83 03-Oct-2019 10:28] JQ_vs_noDrug_gene_exp.diff
├── [ 86 03-Oct-2019 10:28] JQ_vs_noDrug_isoform_exp.diff
├── [ 84 03-Oct-2019 10:28] JQ_vs_noDrug_promoters.diff
├── [ 88 03-Oct-2019 10:28] JQ_vs_noDrug_tss_group_exp.diff
├── [ 50 03-Oct-2019 10:28] limmaA.txt
├── [ 49 03-Oct-2019 10:28] limma.txt
├── [ 70 03-Oct-2019 10:28] LK2_p63_ave_samr.pdf
├── [ 93 03-Oct-2019 10:28] LK2_p63_kallisto_abundance_log_ave_samr.txt
├── [ 96 03-Oct-2019 10:28] LK2_sgBrn2_kallisto_abundance_log_ave_samr.txt
├── [ 69 03-Oct-2019 10:28] LK2_sgBrn2_samr.txt
├── [ 63 03-Oct-2019 10:28] MAnorm2_singlet.sh
├── [ 89 03-Oct-2019 10:28] merged_SE_SSE2_homer_quant_wig_sq13_1v3_samr.txt
├── [ 85 03-Oct-2019 10:28] merged_SE_SSE2_homer_quant_wig_sq13_samr.txt
├── [ 57 03-Oct-2019 10:28] mm10_ERV_3utr.bed
├── [ 89 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_AD7_1vs23.txt
├── [ 90 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_AD7_2vs13.txt
├── [ 104 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_cl_ad29_all_diff_samr_sig_up.txt
├── [ 97 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_cl_ad29_all_diff_samr.txt
├── [ 99 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_cl_ad29_all_g2diff_samr.txt
├── [ 99 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_cl_ad29_all_g3diff_samr.txt
├── [ 103 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_cl_tf_ad29_diff_samr_sig_up.txt
├── [ 96 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_SM9_GO0043565_2.txt
├── [ 104 03-Oct-2019 10:28] Pasted_cl_SE2_coverage_peaks_qnorm_sample_ad29_g1diff_samr_0.txt
├── [ 102 03-Oct-2019 10:28] Pasted_cl_SE2_coverage_peaks_qnorm_sample_ad29_g1diff_samr.txt
├── [ 85 03-Oct-2019 10:28] Pasted_cl_SE2_coverage_peaks_qnorm_sample.txt
├── [ 69 03-Oct-2019 10:28] pca123_mat_log.txt
├── [ 89 03-Oct-2019 10:28] Res_vs_Par_gene_exp.diff
├── [ 92 03-Oct-2019 10:28] Res_vs_Par_isoform_exp.diff
├── [ 90 03-Oct-2019 10:28] Res_vs_Par_promoters.diff
├── [ 94 03-Oct-2019 10:28] Res_vs_Par_tss_group_exp.diff
├── [ 82 03-Oct-2019 10:28] SCLC_RNAseq_gene_avereps_NKX2-1_samr.pdf
├── [ 82 03-Oct-2019 10:28] SCLC_RNAseq_gene_avereps_NKX2-1_samr.txt
├── [ 72 03-Oct-2019 10:28] SCLC_RNAseq_NM_NKX2-1_samr.pdf
├── [ 72 03-Oct-2019 10:28] SCLC_RNAseq_NM_NKX2-1_samr.txt
├── [ 75 03-Oct-2019 10:28] sleuth_output_LK2_p63.txt
├── [ 74 03-Oct-2019 10:28] st_hw_h209_k27ac_p5_swig_peaks.bed
├── [ 97 03-Oct-2019 10:28] st_hw_h209_k27ac_p5_swig_peaks_Enhancers_withStretch.bed
├── [ 95 03-Oct-2019 10:28] st_hw_h209_k27ac_p5_swig_peaks_Enhancers_withSuper.bed
├── [ 92 03-Oct-2019 10:28] TCGA_LUAD_ENST_Sym_ave_sort_by_PBX1_10th_samr.pdf
├── [ 92 03-Oct-2019 10:28] TCGA_LUAD_ENST_Sym_ave_sort_by_PBX1_10th_samr.txt
├── [ 95 03-Oct-2019 10:28] TCGA_LUSC_ENST_tpm_log_lowp63_gene_sox2_hvm_samr.txt
├── [ 91 03-Oct-2019 10:28] TCGA_LUSC_ENST_tpm_log_lowp63_gene_sox2_samr.txt
├── [ 90 03-Oct-2019 10:28] TCGA_LUSC_ENST_tpm_log_lowp63_sox2_hvm_samr.txt
├── [ 85 03-Oct-2019 10:28] TCGA_LUSC_ENST_tpm_log_lowp63_sox2samr.txt
└── [ 76 03-Oct-2019 10:28] TCGA_LUSC_ENST_tpm_log_lowp63.tsv
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