PeakID (cmd=annotatePeaks.pl merged_SE_SSE2_SM9.bed hg19 -size given -wig ./20171108_112-H3_p5_swig_treat_afterfiting_all.scaled.wig ./20171108_190-H3_p5_swig_treat_afterfiting_all.scaled.wig ./20171108_283-H3_p5_swig_treat_afterfiting_all.scaled.wig ./CORL88_7_21_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H1436_H3K27ac_p5_swig_treat_afterfiting_all.scaled.wig ./H1436_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H1963_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H196_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H196_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H2081_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H2081_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H209_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H345_H3K27ac_p5_swig_treat_afterfiting_all.scaled.wig ./H841_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H841_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_COR-L311_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_COR-L311_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H1048-cas9_sgNeg_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H1048-cas9_sgPOU2F3_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H128_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H128_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H146_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H146_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H211_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H211_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H446_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H446_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H510A_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H510A_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H524_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H524_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H526_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H526_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H69_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H69_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H82_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H82_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H889_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H889_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./dms79_ab4729_chip_0825_0828_15c_S13_p5_swig_treat_afterfiting_all.scaled.wig ./h187_ab4729_chip_0825_0828_15c_S15_p5_swig_treat_afterfiting_all.scaled.wig ./h69_ab4729_chip_0610_0714_15c_S27_p5_swig_treat_afterfiting_all.scaled.wig ./hcc33_ab4729_chip_0825_0828_17c_S17_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h1963_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h209_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h2171_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_shp77_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_h526_ab4729_chip_0505_12c_S19_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_h82_ab4729_chip_0331_12c_S3_hg19_p5_swig_treat_afterfiting_all.scaled.wig) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type ./20171108_112-H3_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./20171108_190-H3_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./20171108_283-H3_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./CORL88_7_21_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H1436_H3K27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H1436_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H1963_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H196_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H196_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2081_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2081_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H209_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H345_H3K27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H841_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H841_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_COR-L311_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_COR-L311_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H1048-cas9_sgNeg_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H1048-cas9_sgPOU2F3_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H128_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H128_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H146_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H146_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H211_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H211_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H446_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H446_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H510A_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H510A_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H524_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H524_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H526_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H526_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H69_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H69_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H82_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H82_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H889_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H889_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./dms79_ab4729_chip_0825_0828_15c_S13_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h187_ab4729_chip_0825_0828_15c_S15_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h69_ab4729_chip_0610_0714_15c_S27_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./hcc33_ab4729_chip_0825_0828_17c_S17_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h1963_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h209_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h2171_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_shp77_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_h526_ab4729_chip_0505_12c_S19_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_h82_ab4729_chip_0331_12c_S3_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp 8409 chrX 128220795 128227912 + 0 NA Intergenic Intergenic 433129 NM_001282874 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 0.619 nan 1.320 0.500 7.777 3.653 0.981 0.023 2.952 1.652 0.799 0.196 0.016 0.061 0.280 0.211 0.318 0.530 0.160 0.229 4.412 1.903 0.134 0.117 0.202 0.215 0.209 0.195 0.341 0.255 0.023 0.112 4.301 3.514 0.321 0.364 1.574 0.887 0.008 1.136 0.150 0.981 0.799 0.125 0.072 0.087 3919 chr18 77193812 77228600 + 0 NA intron (NM_172389, intron 5 of 9) CpG 50932 NM_172389 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T-cells 1 protein-coding nan nan 0.483 0.031 0.938 0.452 0.581 0.056 0.051 0.091 0.100 0.512 0.357 0.053 0.061 2.951 3.419 3.456 4.044 0.796 nan 0.691 0.273 0.563 0.568 0.068 0.165 0.157 nan 0.329 0.247 0.630 1.006 0.144 0.200 0.055 0.115 0.273 0.352 0.296 0.051 0.046 0.284 0.581 0.512 0.134 0.038 0.371 0.029 7398 chr7 96408277 96417378 + 0 NA Intergenic Intergenic -73624 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1, 26S proteasome complex subunit protein-coding nan 0.834 nan 0.146 0.912 0.344 0.225 0.107 0.071 0.975 0.569 0.225 0.300 0.073 0.122 0.325 0.254 0.267 0.324 0.333 0.336 2.026 0.744 0.255 0.268 0.553 0.638 0.181 0.241 0.345 0.129 0.176 0.304 7.989 7.928 0.298 nan 2.171 1.564 0.103 0.140 1.535 0.148 0.225 0.225 0.042 0.066 0.043 0.162 1259 chr10 132936952 132944104 + 0 NA intron (NM_174937, intron 7 of 11) intron (NM_174937, intron 7 of 11) 47047 NR_120623 101927489 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 0.433 1.442 0.510 1.943 5.350 2.851 0.310 0.041 0.002 0.132 0.187 9.686 0.951 0.016 0.092 0.216 0.066 0.058 0.107 2.376 3.265 5.882 2.362 0.052 0.067 0.056 0.088 7.653 7.128 0.166 0.075 0.376 0.610 0.573 0.311 0.069 0.076 1.901 1.032 1.098 0.880 0.162 0.022 0.310 9.686 0.083 0.113 0.111 6327 chr5 73192906 73255252 + 0 NA intron (NM_001080479, intron 36 of 36) AluSx1|SINE|Alu 114736 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 1.230 nan 1.361 0.073 0.491 0.263 0.381 1.171 0.123 0.194 0.120 0.162 0.568 1.405 0.147 0.279 0.180 0.724 1.994 0.471 0.487 nan 0.215 0.127 0.125 2.870 nan 0.321 0.290 0.856 0.900 0.119 0.160 1.303 1.352 0.415 0.972 0.675 0.463 0.614 0.147 0.644 0.216 0.381 0.162 0.385 0.065 0.030 0.381 4902 chr20 25289248 25311239 + 0 NA intron (NM_001042472, intron 4 of 12) LTR65|LTR|ERV1 71375 NM_015600 26090 Hs.441550 NM_015600 ENSG00000100997 ABHD12 ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2 abhydrolase domain containing 12 protein-coding 1.198 3.049 nan 0.955 0.518 0.263 0.774 0.981 0.198 0.385 0.211 0.618 0.927 0.079 0.087 1.060 1.707 0.508 1.063 1.954 1.879 1.584 0.437 0.518 0.509 0.517 0.908 5.650 6.121 0.547 0.463 0.525 0.721 0.889 1.315 0.563 1.184 1.466 1.087 1.637 1.625 0.186 0.069 0.774 0.618 0.269 0.380 0.190 0.258 4261 chr2 25473938 25476093 + 0 NA promoter-TSS (NM_001320893) promoter-TSS (NM_001320893) -15 NM_001320893 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 8.113 2.470 9.894 5.937 6.686 3.251 6.281 0.585 0.299 0.203 0.263 5.310 21.567 5.244 0.122 8.393 8.713 6.483 7.252 12.479 11.378 9.063 3.643 24.081 25.434 0.155 0.549 11.540 19.354 8.112 9.967 5.194 8.503 2.363 2.031 11.845 8.779 1.935 1.186 8.730 6.101 0.263 3.524 6.281 5.310 6.161 1.921 2.542 3.733 7790 chr8 93098855 93122866 + 0 NA intron (NM_175634, intron 1 of 11) intron (NM_175634, intron 1 of 11) 1056 NM_001198628 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 translocation partner 1 protein-coding nan 1.423 4.489 3.711 1.338 0.761 2.659 1.589 0.173 0.764 0.618 3.170 12.039 0.052 0.071 0.218 0.159 0.311 nan 5.506 4.879 2.624 0.828 0.280 0.247 1.297 1.619 3.453 4.504 5.804 8.062 0.164 0.212 1.219 0.593 2.968 4.676 0.952 0.594 5.119 2.989 0.480 2.931 2.659 3.170 0.685 2.325 0.066 1.006 1266 chr11 529049 540876 + 0 NA intron (NM_176795, intron 1 of 5) CpG 605 NM_176795 3265 Hs.37003 NM_005343 ENSG00000174775 HRAS C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras HRas proto-oncogene, GTPase protein-coding 1.485 3.010 2.208 1.067 1.395 0.609 0.940 0.328 0.122 1.027 0.569 2.807 3.734 0.871 0.052 5.139 7.287 1.877 2.580 2.606 2.540 2.374 0.985 2.682 2.628 0.796 1.268 1.406 2.281 1.235 1.156 2.527 4.023 2.266 2.146 1.143 1.233 1.209 0.771 1.047 2.153 0.526 0.282 0.940 2.807 0.404 0.523 1.609 0.444 6578 chr6 1593639 1617020 + 0 NA promoter-TSS (NR_125804) promoter-TSS (NR_125804) -437 NR_125804 101927703 Hs.607964 NR_125804 FOXCUT LINC01379|TCONS_00011636 FOXC1 upstream transcript (non-protein coding) ncRNA 1.218 1.583 3.576 1.592 1.885 0.941 0.991 2.016 0.187 0.270 0.153 0.441 1.006 0.537 0.077 0.446 0.397 2.611 4.974 0.896 0.636 1.221 0.340 1.049 1.003 0.483 0.921 0.620 1.050 0.521 0.286 0.452 0.491 0.492 0.633 0.219 0.503 0.898 0.513 0.072 0.155 0.036 2.996 0.991 0.441 0.037 1.938 0.101 0.111 3419 chr17 42287532 42300456 + 0 NA exon (NM_001076684, exon 3 of 20) exon (NM_001076684, exon 3 of 20) 3047 NM_001076684 7343 Hs.89781 NM_014233 ENSG00000108312 UBTF NOR-90|UBF|UBF-1|UBF1|UBF2 upstream binding transcription factor, RNA polymerase I protein-coding 5.149 3.767 nan 4.329 5.423 2.708 4.380 1.809 0.362 3.035 1.598 4.927 7.488 3.051 0.099 4.779 5.538 2.971 4.409 7.234 nan 4.607 1.486 7.156 7.291 2.025 2.823 6.165 nan 6.057 7.501 3.333 6.341 3.862 3.099 4.533 5.899 1.927 1.052 3.565 4.259 1.509 3.298 4.380 4.927 1.166 3.617 2.354 2.694 4209 chr2 8904783 8924912 + 0 NA intron (NM_020738, intron 21 of 29) L2a|LINE|L2 62908 NM_020738 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS kinase D interacting substrate 220 protein-coding 0.868 0.634 0.729 0.113 1.249 0.582 0.268 0.146 0.072 0.733 0.686 0.402 0.473 0.097 0.117 0.302 0.290 0.354 0.391 0.431 0.494 4.180 4.866 0.233 0.194 0.693 0.752 0.462 0.423 0.470 0.212 0.166 0.300 0.456 0.703 0.375 0.806 1.787 0.766 0.057 0.150 0.152 0.358 0.268 0.402 0.025 0.065 0.074 0.110 8091 chr9 22369362 22382405 + 0 NA Intergenic Intergenic -70957 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 1.478 nan nan 0.303 0.207 0.098 0.788 0.116 0.047 0.660 0.271 0.046 0.331 0.033 0.085 0.114 0.107 0.194 0.563 0.355 0.421 3.111 0.972 0.071 0.062 2.737 3.099 0.093 0.109 2.488 2.110 0.130 0.208 4.378 5.402 0.472 0.887 5.893 2.496 0.020 0.054 1.382 0.581 0.788 0.046 0.141 0.676 0.023 0.360 4570 chr2 164026059 164071225 + 0 NA Intergenic Intergenic -353385 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 0.869 0.875 nan 0.092 0.330 0.166 0.111 0.086 0.083 0.295 0.346 0.053 0.307 0.079 0.089 0.283 0.185 0.235 0.417 0.191 0.318 0.120 0.082 0.250 0.238 0.345 0.565 0.232 0.238 0.433 0.162 0.133 0.231 3.457 3.974 0.286 0.609 0.890 0.446 0.026 0.052 1.219 0.028 0.111 0.053 0.017 0.052 0.046 0.104 2479 chr14 20921972 20924855 + 0 NA promoter-TSS (NM_017807) promoter-TSS (NM_017807) 123 NM_001641 328 Hs.73722 NM_001641 ENSG00000100823 APEX1 APE|APE1|APEN|APEX|APX|HAP1|REF1 apurinic/apyrimidinic endodeoxyribonuclease 1 protein-coding 17.307 5.864 7.678 11.501 7.856 3.724 5.662 7.804 0.371 2.300 0.973 6.484 14.510 7.179 0.215 8.299 7.056 12.088 16.950 17.335 15.169 11.676 7.829 25.809 26.821 10.182 12.631 15.161 20.470 18.587 17.895 7.696 10.236 11.631 13.447 9.685 8.601 7.034 4.362 8.191 8.474 2.085 5.283 5.662 6.484 4.006 4.559 2.967 2.501 1 chr1 11311 16678 + 0 NA TTS (NR_024540) TTS (NR_024540) 2120 NR_046018 100287102 Hs.618434 NR_046018 ENSG00000223972 DDX11L1 - DEAD/H-box helicase 11 like 1 pseudo 2.718 nan 2.882 0.637 0.765 0.326 6.378 0.226 0.211 1.989 1.065 1.094 4.839 0.269 0.125 0.990 1.269 0.868 1.456 6.664 6.517 1.878 0.593 1.533 1.190 2.258 nan nan 1.745 nan 1.411 0.527 0.675 2.982 2.275 0.811 1.321 6.419 3.203 11.756 5.570 1.652 0.340 6.378 1.094 1.306 1.799 0.082 0.384 2845 chr15 37383875 37406845 + 0 NA Intergenic Intergenic -1860 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 HsT18361|MRG1 Meis homeobox 2 protein-coding 2.871 nan nan 0.818 1.154 0.623 1.762 2.115 0.315 1.376 1.060 0.459 2.800 4.433 0.128 1.250 2.091 0.647 0.996 2.794 2.525 1.391 0.544 1.519 1.576 2.259 3.084 1.230 2.031 2.067 2.178 1.473 3.295 8.401 6.860 4.072 4.156 1.094 0.706 0.630 1.180 2.818 1.573 1.762 0.459 0.314 0.194 1.349 1.679 4676 chr2 205188208 205238506 + 0 NA Intergenic L1ME1|LINE|L1 -197159 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 1.013 nan 1.105 0.130 0.287 0.108 0.219 0.162 0.084 0.119 0.109 0.299 0.370 0.017 0.069 0.506 0.304 0.657 0.587 0.339 0.394 0.393 0.108 13.152 13.439 0.415 0.725 0.709 0.580 0.876 0.762 0.175 0.258 0.363 0.282 0.457 0.827 0.474 0.356 0.106 0.066 0.110 0.248 0.219 0.299 0.187 0.036 0.043 0.212 6797 chr6 48150670 48164437 + 0 NA Intergenic Intergenic -121128 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 0.803 0.948 0.859 0.173 0.301 0.209 0.298 0.190 0.093 0.192 0.178 0.113 0.377 0.048 0.088 0.525 0.357 0.907 0.403 0.190 0.334 6.886 7.488 0.517 0.546 0.577 0.774 0.538 nan 0.315 0.086 0.089 0.226 1.228 2.391 0.316 0.368 0.613 0.505 0.004 0.045 0.386 0.144 0.298 0.113 0.007 0.192 0.101 0.107 4405 chr2 74733211 74743627 + 0 NA Intergenic Intergenic -3177 NM_016170 3196 Hs.168586 NM_016170 ENSG00000115297 TLX2 HOX11L1|NCX T-cell leukemia homeobox 2 protein-coding nan nan 2.644 1.825 2.149 1.200 1.462 1.271 0.246 0.814 0.369 1.650 3.597 2.033 0.132 1.532 1.865 2.915 4.444 3.406 3.286 4.581 1.931 3.461 3.856 1.436 1.800 2.615 2.845 4.434 3.706 1.365 1.993 0.855 1.210 6.694 11.856 nan 0.807 1.641 0.799 0.248 4.571 1.462 1.650 1.107 0.971 0.532 5.567 2029 chr12 76204933 76215598 + 0 NA Intergenic Intergenic 215291 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding nan 1.649 0.700 0.311 0.518 0.331 1.235 0.405 0.224 0.384 0.389 0.587 0.634 0.041 0.061 0.436 0.316 0.353 0.543 2.286 2.090 0.786 0.436 0.280 0.203 3.754 4.715 nan 1.028 2.796 2.756 0.209 0.299 1.014 1.203 0.453 0.933 nan 1.388 0.142 0.286 0.417 0.364 1.235 0.587 0.778 0.277 0.068 0.393 3552 chr17 73147342 73151597 + 0 NA promoter-TSS (NM_001288610) promoter-TSS (NM_001288610) -81 NM_001288610 51155 Hs.532803 NM_016185 ENSG00000189159 HN1 ARM2|HN1A hematological and neurological expressed 1 protein-coding 8.787 3.875 4.355 5.053 6.051 3.450 4.139 2.259 0.457 5.508 2.283 5.205 14.247 4.340 0.250 8.810 10.717 4.793 6.171 10.522 7.302 8.788 2.448 9.554 10.455 nan 9.050 6.258 12.527 14.936 20.523 3.816 8.047 10.013 7.839 7.818 7.445 nan 3.315 3.950 4.470 1.538 3.369 4.139 5.205 1.364 4.753 2.308 2.016 5571 chr3 139692649 139701514 + 0 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 43054 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 1.272 nan nan 0.173 0.788 0.525 0.247 0.077 0.182 0.324 0.253 0.081 0.313 0.036 0.082 0.343 0.273 0.445 0.500 0.497 0.571 8.097 2.410 0.290 0.332 3.225 4.245 0.220 0.270 nan 2.412 0.325 0.635 1.511 0.744 0.594 0.743 0.844 0.743 0.383 0.111 0.398 0.074 0.247 0.081 0.478 0.034 0.056 0.165 7634 chr8 31495906 31502722 + 0 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 2046 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 0.528 3.956 nan 0.694 0.236 0.097 0.452 0.065 0.119 0.691 0.481 0.052 15.565 2.602 0.190 0.268 0.299 0.164 0.362 1.989 1.388 0.270 0.089 0.186 0.195 0.395 0.534 0.790 0.681 1.107 1.634 1.046 2.954 1.031 1.041 0.162 0.327 2.657 1.349 1.827 2.029 0.184 0.197 0.452 0.052 0.128 1.192 0.930 0.055 710 chr1 183437071 183453288 + 0 NA intron (NM_001174061, intron 1 of 21) intron (NM_001174061, intron 1 of 21) 3673 NM_173156 9887 Hs.591463 NM_014837 ENSG00000116698 SMG7 C1orf16|EST1C|SGA56M SMG7, nonsense mediated mRNA decay factor protein-coding nan nan 2.785 1.821 1.843 1.197 2.578 2.084 0.285 1.668 0.733 1.542 4.795 1.464 0.126 3.268 3.820 4.969 6.349 4.937 nan 3.380 1.942 nan 6.667 2.754 3.690 3.974 5.404 3.215 3.294 3.493 5.401 3.671 4.101 4.469 nan 1.851 1.294 1.045 3.463 0.848 1.112 2.578 1.542 0.911 1.032 2.048 1.344 5105 chr21 35894091 35935094 + 0 NA intron (NM_004414, intron 1 of 3) MLT1G1|LTR|ERVL-MaLR -15284 NM_001331016 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 0.750 0.689 0.867 0.156 0.273 0.121 0.836 0.823 0.118 0.099 0.083 0.196 0.858 0.059 0.086 1.183 1.049 4.007 5.694 0.462 0.519 1.095 0.382 0.329 0.320 0.184 0.321 0.538 0.556 0.424 0.219 0.371 0.311 0.256 0.342 0.278 0.552 nan 0.693 0.575 0.413 0.047 0.084 0.836 0.196 0.033 0.077 0.058 0.179 112 chr1 17989012 18015365 + 0 NA intron (NM_001319838, intron 15 of 17) intron (NM_001319838, intron 15 of 17) 57380 NM_001319838 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 0.966 0.722 nan 0.037 0.402 0.214 0.439 0.123 0.049 0.117 0.109 0.176 1.158 0.082 0.100 1.746 2.836 0.806 0.517 0.844 0.756 0.427 0.157 0.556 nan 0.927 nan 0.288 0.615 nan 1.739 0.682 1.281 0.071 0.088 0.330 0.560 0.923 0.631 2.580 0.208 0.011 0.142 0.439 0.176 0.360 0.062 1.119 0.070 588 chr1 156250748 156254606 + 0 NA promoter-TSS (NR_026678) promoter-TSS (NR_026678) 4 NM_001323615 23381 Hs.516837 NM_015327 ENSG00000198952 SMG5 EST1B|LPTS-RP1|LPTSRP1|SMG-5 SMG5, nonsense mediated mRNA decay factor protein-coding 5.708 nan 5.331 3.686 3.928 1.843 3.735 3.038 0.291 3.429 1.831 3.873 25.096 4.162 0.184 6.458 6.754 8.831 11.664 7.299 nan 8.398 3.546 6.151 6.312 4.884 6.862 10.320 13.909 5.430 5.543 6.388 10.951 3.721 5.447 8.059 8.450 3.650 1.776 2.320 3.797 0.742 1.685 3.735 3.873 1.082 3.502 2.956 2.031 7123 chr7 1326483 1331996 + 0 NA Intergenic Intergenic 56585 NM_001080461 340260 Hs.232272 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 3.704 0.707 10.823 0.176 0.490 0.145 0.444 0.069 0.133 0.132 0.348 nan 0.746 0.125 0.214 0.243 0.096 nan 1.218 0.753 nan 0.101 0.476 0.439 0.285 0.410 nan 0.230 1.214 0.958 0.246 0.334 0.288 0.369 0.106 0.066 0.702 0.363 0.404 0.045 0.070 0.047 0.444 0.348 3.454 0.186 0.072 0.089 170 chr1 28989356 28996831 + 0 NA Intergenic AluSc8|SINE|Alu -2147 NM_024482 10691 Hs.632373 NM_006582 ENSG00000162419 GMEB1 P96PIF|PIF96 glucocorticoid modulatory element binding protein 1 protein-coding 4.171 2.545 nan 4.444 4.017 2.141 3.319 1.542 0.581 1.445 0.814 2.240 5.701 3.329 0.180 3.258 3.887 3.389 5.207 7.783 7.849 3.762 1.801 7.425 7.667 6.756 7.784 3.820 5.497 5.643 5.211 2.407 4.040 1.861 2.111 3.842 7.114 2.539 1.331 3.803 2.564 0.448 1.403 3.319 2.240 0.919 1.545 1.313 2.433 2116 chr12 104522864 104533097 + 0 NA intron (NM_006166, intron 2 of 7) intron (NM_006166, intron 2 of 7) 4060 NM_006166 4801 Hs.84928 NM_006166 ENSG00000120837 NFYB CBF-A|CBF-B|HAP3|NF-YB nuclear transcription factor Y subunit beta protein-coding 2.634 2.168 nan 2.836 3.366 1.639 2.400 1.541 0.315 1.210 0.781 3.497 3.399 1.708 0.173 2.601 2.304 3.080 4.523 4.755 4.508 5.261 1.949 4.278 4.065 2.534 3.513 3.137 4.855 3.694 3.832 1.123 2.788 2.497 1.926 3.816 3.220 4.957 2.053 1.688 1.990 0.521 0.846 2.400 3.497 0.389 1.220 0.741 0.976 7299 chr7 57883564 57887781 + 0 NA Intergenic Intergenic 375789 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding nan 1.212 1.611 0.083 0.459 0.105 0.144 0.161 0.038 0.113 0.140 0.142 0.491 0.091 0.278 2.326 5.209 11.652 2.252 0.366 0.493 0.260 0.160 0.541 0.665 0.376 0.801 0.132 0.221 0.753 0.360 0.623 1.109 0.080 0.119 0.220 0.429 0.397 0.363 0.027 0.042 0.091 0.113 0.144 0.142 0.045 0.024 0.175 0.118 526 chr1 150252938 150267528 + 0 NA TTS (NM_001300838) TTS (NM_001300838) 5101 NM_001300841 148523 Hs.54680 NM_144697 ENSG00000159208 CIART C1orf51|CHRONO|GM129 circadian associated repressor of transcription protein-coding nan nan 2.739 2.208 1.547 0.790 1.370 1.665 0.264 1.365 0.637 1.488 5.439 0.834 0.138 3.657 3.277 4.568 4.253 4.230 nan 4.238 2.196 6.897 7.439 2.711 3.459 4.016 7.065 1.900 1.690 4.520 5.437 2.259 2.754 2.670 2.939 2.533 1.649 1.008 3.365 0.261 0.539 1.370 1.488 0.406 1.984 2.646 0.738 3500 chr17 61914761 61928952 + 0 NA Intergenic Intergenic -1505 NM_001098426 6603 Hs.250581 NM_003077 ENSG00000108604 SMARCD2 BAF60B|CRACD2|PRO2451|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein-coding 2.731 nan 4.520 2.300 4.620 2.265 0.777 0.811 0.224 1.945 0.974 2.871 3.571 1.482 0.123 3.995 5.369 1.302 2.034 3.110 3.016 3.238 1.130 8.435 9.047 1.324 nan 4.963 5.471 3.309 3.344 0.825 2.236 1.897 1.953 1.945 3.903 1.538 0.837 0.791 1.411 0.506 1.284 0.777 2.871 0.478 0.754 0.627 1.065 8251 chr9 117209036 117236345 + 0 NA intron (NM_015404, intron 3 of 11) MIRb|SINE|MIR -34242 NM_001346890 25861 Hs.93836 NM_015404 ENSG00000095397 WHRN CIP98|DFNB31|PDZD7B|USH2D|WI whirlin protein-coding 0.700 1.083 nan 0.786 0.421 0.188 0.750 0.124 0.089 0.328 0.308 0.472 1.450 0.061 0.078 0.252 0.257 0.229 0.305 1.322 1.388 0.649 0.222 0.444 0.477 0.251 0.404 1.488 nan 0.667 0.558 0.177 0.275 0.486 0.511 0.246 0.315 nan 1.329 4.151 0.250 0.084 0.077 0.750 0.472 0.319 1.050 0.087 0.081 6568 chr5 177364927 177386683 + 0 NA Intergenic MIR|SINE|MIR 47438 NM_006261 5626 Hs.158301 NM_006261 ENSG00000175325 PROP1 CPHD2|PROP-1 PROP paired-like homeobox 1 protein-coding 0.994 1.478 0.948 0.150 0.359 0.198 0.737 0.070 0.097 0.216 0.193 1.776 2.372 0.141 0.139 0.543 0.950 0.638 nan 1.320 1.234 1.164 0.336 0.536 0.534 1.456 nan 1.756 1.575 0.393 0.253 0.428 0.607 0.446 0.349 0.183 0.335 0.656 0.416 2.664 4.297 0.119 0.075 0.737 1.776 0.405 0.177 0.173 0.079 6997 chr6 138404905 138414650 + 0 NA 3' UTR (NM_022121, exon 3 of 3) 3' UTR (NM_022121, exon 3 of 3) 18883 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 PERP, TP53 apoptosis effector protein-coding 0.989 2.611 1.064 2.850 2.843 1.318 4.116 0.038 0.016 0.436 0.314 0.373 11.814 0.038 0.122 0.383 0.217 1.288 4.248 1.000 1.041 nan 2.233 0.343 0.366 0.080 0.212 1.785 2.812 0.585 0.280 0.187 0.402 5.497 9.294 0.374 nan 1.184 0.601 0.851 0.801 1.642 0.096 4.116 0.373 0.060 1.372 0.111 0.269 1182 chr10 97204425 97217810 + 0 NA intron (NM_015385, intron 2 of 24) intron (NM_015385, intron 2 of 24) -10180 NM_001290296 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 0.710 0.763 0.682 0.117 0.294 0.123 0.028 0.085 0.107 0.059 0.037 0.091 0.279 0.040 0.078 0.478 0.438 2.875 6.985 0.227 0.299 0.575 0.210 0.157 0.141 0.218 0.438 nan 0.589 0.214 0.133 0.166 0.267 0.108 0.167 0.245 0.530 0.498 0.384 0.033 0.113 0.007 0.113 0.028 0.091 0.065 0.045 0.015 0.167 2763 chr14 100695117 100714264 + 0 NA promoter-TSS (NM_003403) promoter-TSS (NM_003403) -412 NM_003403 7528 Hs.388927 NM_003403 ENSG00000100811 YY1 DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1 YY1 transcription factor protein-coding 3.662 1.736 2.010 2.465 2.011 1.184 2.084 1.575 0.317 1.252 0.568 2.287 3.279 1.671 0.135 1.757 2.035 2.495 3.546 4.247 4.246 1.783 0.966 2.825 2.923 1.627 2.307 2.536 3.954 3.908 4.121 2.653 4.494 1.885 2.375 1.964 1.926 1.100 0.707 1.944 2.060 0.558 1.788 2.084 2.287 0.325 0.628 2.486 0.575 8011 chr9 1791878 1799111 + 0 NA Intergenic Intergenic -219725 NM_001289397 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 0.882 1.669 0.735 0.073 0.349 0.111 0.316 0.124 0.068 0.088 0.080 0.116 0.273 0.015 0.109 2.120 1.135 10.846 0.914 0.268 0.538 0.186 0.091 6.178 6.101 2.694 3.826 0.154 0.176 3.712 3.327 0.264 1.594 0.067 0.056 0.043 nan 0.705 0.895 0.036 3.595 0.316 0.116 0.174 0.028 0.408 0.018 788 chr1 203140759 203157030 + 0 NA exon (NM_001276, exon 9 of 10) exon (NM_001276, exon 9 of 10) -3952 NM_004997 4608 Hs.927 NM_004997 ENSG00000133055 MYBPH - myosin binding protein H protein-coding 1.524 1.017 1.448 0.152 1.952 0.874 0.269 0.121 0.110 0.463 0.156 2.777 0.554 0.053 0.076 0.648 0.872 0.506 0.704 1.563 2.346 1.449 0.408 nan nan 0.353 0.612 0.743 0.728 0.524 0.304 0.214 0.282 0.134 0.199 1.574 5.327 1.069 0.623 0.232 0.324 0.024 0.419 0.269 2.777 0.142 0.354 0.012 0.676 4797 chr20 303791 311334 + 0 NA 3' UTR (NM_006943, exon 1 of 1) 3' UTR (NM_006943, exon 1 of 1) 1347 NM_006943 6666 Hs.43627 NM_006943 ENSG00000177732 SOX12 SOX22 SRY-box 12 protein-coding 5.514 4.555 3.596 5.243 3.746 1.923 3.922 1.201 0.170 1.616 0.842 3.267 11.850 4.080 0.107 5.540 7.193 2.500 3.568 4.747 3.087 7.529 2.262 8.770 9.319 3.464 5.047 7.749 9.968 7.963 10.450 2.264 5.156 4.953 3.032 6.625 7.121 1.640 0.660 2.921 7.624 1.247 2.128 3.922 3.267 1.642 4.545 3.121 3.018 7530 chr7 148523941 148558127 + 0 NA intron (NM_001203248, intron 3 of 19) intron (NM_001203248, intron 3 of 19) 39567 NM_001203249 2146 Hs.444082 NM_004456 ENSG00000106462 EZH2 ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 1.161 0.737 0.956 0.167 0.384 0.220 0.128 0.221 0.103 0.302 0.234 0.260 0.348 0.200 0.171 0.660 0.581 0.735 0.766 0.487 0.606 0.410 0.209 1.649 1.612 0.752 0.889 0.466 0.418 0.958 0.450 0.496 0.863 0.176 0.247 1.149 3.303 0.685 nan 0.088 0.140 0.044 0.146 0.128 0.260 0.060 0.065 0.331 0.752 1313 chr11 12397673 12413892 + 0 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 6756 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 1.398 nan 0.852 0.458 0.465 0.266 0.456 1.076 0.111 0.251 0.223 4.166 0.732 0.412 0.081 nan 1.072 1.361 2.044 1.412 1.487 1.854 0.632 2.538 2.369 0.543 nan 1.098 1.516 0.867 0.857 0.745 1.080 1.059 0.873 0.439 0.660 1.862 nan 0.410 0.300 0.316 0.215 0.456 4.166 0.163 0.006 0.220 0.107 1294 chr11 9479999 9485503 + 0 NA promoter-TSS (NR_036539) promoter-TSS (NR_036539) 239 NM_001282656 7702 Hs.523471 NM_003442 ENSG00000166478 ZNF143 SBF|STAF|pHZ-1 zinc finger protein 143 protein-coding 5.343 5.471 5.785 7.211 8.063 4.369 5.840 3.736 0.379 2.817 1.386 10.464 12.042 6.374 0.174 11.879 9.963 9.225 14.572 12.857 13.016 9.733 6.933 18.182 19.401 7.085 8.878 6.337 11.378 10.416 10.189 8.255 11.904 8.290 10.091 9.400 8.713 4.111 2.049 5.979 5.468 1.898 2.521 5.840 10.464 0.996 1.771 4.039 3.078 6510 chr5 149155924 149191313 + 0 NA intron (NM_001172699, intron 1 of 10) MER58A|DNA|hAT-Charlie 22115 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding nan 1.546 0.680 0.990 0.290 0.127 0.249 0.128 0.086 0.322 0.165 0.183 0.793 0.089 0.122 0.474 0.828 0.323 0.536 0.332 0.308 1.153 0.251 0.739 0.837 0.577 0.973 4.114 4.198 0.774 0.746 0.678 0.793 0.887 1.461 0.438 1.149 0.666 0.447 0.130 0.405 0.136 0.548 0.249 0.183 0.130 0.682 0.372 0.239 3648 chr18 5283942 5300165 + 0 NA exon (NM_001243702, exon 4 of 4) exon (NM_001243702, exon 4 of 4) 3648 NM_001243702 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 1.702 1.876 2.186 2.856 1.862 0.882 0.807 0.920 0.150 1.138 0.605 2.040 nan 1.700 0.127 1.579 2.628 2.177 2.399 5.046 4.070 nan 1.990 2.081 1.948 1.000 nan 7.825 9.485 nan 2.544 0.862 1.653 3.823 3.052 0.781 nan nan 1.423 2.518 1.719 0.875 1.097 0.807 2.040 0.437 1.171 0.368 0.206 1950 chr12 53287527 53323073 + 0 NA intron (NM_001256293, intron 1 of 8) L2c|LINE|L2 -6432 NM_002273 3856 Hs.533782 NM_002273 ENSG00000170421 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding nan 1.939 0.704 2.948 3.294 1.700 0.661 0.199 0.134 0.828 0.571 4.914 6.432 0.049 0.079 nan 3.461 0.937 1.628 3.393 nan 4.557 1.461 1.749 1.794 0.207 nan 8.103 nan 0.648 0.506 1.134 1.824 1.092 1.161 0.162 0.191 1.829 1.001 1.510 4.138 0.300 1.399 0.661 4.914 0.448 0.548 0.928 0.024 1890 chr12 29385919 29400433 + 0 NA intron (NM_001271784, intron 1 of 10) LTR85c|LTR|Gypsy? 16620 NM_018099 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding nan nan nan 0.270 0.200 0.121 0.985 0.227 0.056 0.086 0.123 0.058 0.296 0.097 0.130 0.227 0.166 0.189 0.252 0.428 0.471 0.170 0.093 0.477 0.454 3.617 3.689 0.169 0.192 0.777 0.645 0.194 0.206 0.038 0.035 0.657 2.727 0.247 0.342 0.066 0.098 0.082 0.985 0.058 0.209 0.048 0.051 0.433 89 chr1 14226471 14233030 + 0 NA Intergenic Intergenic 153874 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 0.683 0.971 nan 0.290 0.470 0.198 0.107 0.045 0.049 0.048 0.038 0.075 0.802 0.036 0.068 0.459 0.422 7.064 2.350 0.513 0.504 1.212 0.417 0.473 nan 0.163 nan 1.081 1.004 nan 0.173 0.459 0.744 0.054 0.154 0.201 0.228 0.666 0.497 0.874 0.122 0.014 0.060 0.107 0.075 0.030 0.200 0.347 0.019 8058 chr9 14051507 14067509 + 0 NA Intergenic Intergenic 121293 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 0.934 0.248 0.532 0.323 0.400 0.136 0.080 0.177 0.152 1.100 1.592 0.034 0.068 0.249 0.085 0.391 0.732 1.546 1.864 0.463 0.294 0.104 0.090 5.571 6.993 0.730 1.256 0.476 0.336 0.208 0.312 0.248 0.233 0.190 0.428 1.148 0.866 7.513 0.239 0.149 0.084 0.400 1.100 0.043 0.082 0.104 0.061 988 chr10 1450650 1530046 + 0 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) -78477 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168|bA466B20.1 ADARB2 antisense RNA 1 ncRNA 0.483 0.444 0.725 0.539 4.121 2.138 0.492 0.138 0.105 1.249 0.574 5.488 0.537 0.031 0.076 0.803 1.330 0.117 0.150 1.999 2.122 0.267 0.134 0.739 0.773 0.105 0.191 3.573 3.818 0.166 0.082 0.933 1.852 0.029 0.045 0.084 0.110 0.044 0.053 0.813 4.051 0.007 0.050 0.492 5.488 0.192 0.184 2.278 0.017 1318 chr11 12819156 12838323 + 0 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 132770 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 1.223 nan 2.449 1.984 2.620 1.280 2.360 0.973 0.082 1.340 0.674 5.535 3.409 0.176 0.066 nan 1.164 1.653 4.050 3.318 3.466 3.540 1.740 0.921 0.863 1.218 nan 2.799 4.020 0.934 0.894 0.911 2.075 2.779 2.507 1.515 4.439 2.722 nan 3.496 2.883 0.764 0.972 2.360 5.535 0.217 0.244 1.814 1.249 1570 chr11 92103700 92156638 + 0 NA intron (NM_001008781, intron 1 of 24) AluSq|SINE|Alu 44907 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 0.618 nan 0.559 0.187 0.167 0.109 0.185 0.167 0.039 0.089 0.105 0.088 0.432 0.083 0.120 2.690 1.813 3.540 nan 0.503 0.632 0.113 0.080 3.765 3.973 0.658 0.907 0.610 0.610 0.506 0.367 0.811 1.314 0.378 0.549 0.232 nan 0.657 0.615 0.128 0.069 0.077 0.060 0.185 0.088 0.033 0.059 0.434 0.119 6239 chr5 38527974 38559302 + 0 NA intron (NM_002310, intron 1 of 19) MIR|SINE|MIR 13110 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 1.222 2.519 nan 6.526 2.923 1.400 1.232 0.424 0.212 0.927 0.477 2.641 7.539 0.464 0.126 0.532 0.476 0.440 0.623 2.725 2.924 0.188 0.094 1.351 1.311 0.286 0.510 6.053 7.476 3.378 2.923 0.226 0.418 0.157 0.161 0.273 0.474 3.846 1.909 2.639 3.450 0.044 0.448 1.232 2.641 0.625 1.763 0.066 0.082 3721 chr18 31373827 31426055 + 0 NA Intergenic LTR12D|LTR|ERV1 228635 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding nan 0.975 0.924 2.902 3.295 1.565 0.984 0.072 0.052 0.538 0.482 5.855 1.310 0.029 0.088 0.445 0.328 0.303 0.342 6.012 7.421 1.792 0.507 0.211 0.206 0.353 0.464 nan 7.919 0.571 0.375 0.120 0.189 3.295 3.447 0.285 0.583 8.472 4.185 0.997 3.207 0.832 0.199 0.984 5.855 0.186 0.440 0.060 0.087 2062 chr12 85861608 85886494 + 0 NA Intergenic THE1B|LTR|ERVL-MaLR 200015 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 0.771 0.914 0.752 0.253 0.409 0.207 0.119 0.352 0.143 0.475 0.257 0.324 0.653 0.052 0.111 0.355 0.248 0.294 0.382 0.417 0.461 5.007 1.593 0.292 0.334 1.111 1.302 0.642 0.712 0.524 0.221 0.137 0.235 1.603 1.891 0.433 0.619 1.227 0.777 0.018 0.068 0.418 0.047 0.119 0.324 0.012 0.196 0.075 0.204 7740 chr8 71313494 71317374 + 0 NA promoter-TSS (NM_001321712) promoter-TSS (NM_001321712) 56 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 9.742 3.588 5.589 7.252 6.341 3.188 5.366 5.033 0.620 3.659 1.581 9.309 20.045 6.069 0.138 3.117 7.213 4.382 6.188 15.582 12.204 7.144 2.997 12.380 11.956 4.634 5.722 5.676 7.519 3.710 5.119 3.182 9.752 8.300 6.295 4.995 7.334 5.263 2.581 4.215 9.386 4.291 6.896 5.366 9.309 0.706 6.561 3.952 2.957 6989 chr6 136608658 136617022 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity -1851 NM_001077441 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 5.805 3.377 5.124 5.985 4.799 2.302 4.363 2.325 0.097 1.746 0.793 4.322 7.573 2.833 0.125 8.743 9.694 6.147 7.808 10.066 9.204 nan 9.439 15.676 16.964 3.296 3.896 5.100 8.691 10.004 10.426 6.654 9.164 7.963 7.093 8.254 nan 2.458 1.929 4.363 3.135 1.288 1.980 4.363 4.322 0.978 2.836 4.993 1.848 5650 chr3 170072379 170077225 + 0 NA promoter-TSS (NM_005414) promoter-TSS (NM_005414) -671 NM_001145098 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 9.869 5.021 5.333 5.465 5.204 2.314 4.360 3.348 0.218 4.089 2.019 6.026 5.466 6.911 0.130 3.208 5.670 4.425 6.662 7.223 6.417 10.416 3.116 9.750 9.735 4.061 5.754 8.139 10.378 12.830 14.360 2.649 5.548 6.230 4.923 7.760 10.285 2.221 1.277 5.401 2.221 2.063 4.226 4.360 6.026 1.321 3.035 2.646 4.432 5129 chr21 40890134 40911020 + 0 NA Intergenic Intergenic 76797 NM_007341 6450 Hs.473847 NM_007341 ENSG00000185437 SH3BGR 21-GARP SH3 domain binding glutamate rich protein protein-coding nan 0.672 1.969 0.358 0.520 0.243 0.333 0.096 0.077 0.113 0.080 0.460 8.096 0.063 0.095 0.600 0.674 0.233 0.302 0.611 0.578 nan 0.190 0.238 0.243 0.225 nan 0.695 0.743 0.393 0.229 0.297 0.300 0.264 0.294 0.221 0.289 1.118 0.911 1.905 0.132 0.036 0.422 0.333 0.460 0.014 0.059 0.120 0.065 6660 chr6 21583993 21616701 + 0 NA Intergenic Intergenic 6375 NM_003107 6659 Hs.643910 NM_003107 ENSG00000124766 SOX4 EVI16 SRY-box 4 protein-coding 3.444 2.823 nan 4.276 3.534 2.036 2.964 2.082 0.307 1.811 0.939 5.653 nan 3.628 0.147 3.116 3.961 4.902 nan 7.221 5.862 nan 1.535 10.732 10.737 2.343 3.126 4.433 5.210 3.881 4.617 2.789 6.312 4.684 3.813 1.925 2.488 1.871 1.093 3.906 2.994 1.359 2.194 2.964 5.653 0.966 1.553 2.940 0.884 7189 chr7 19408165 19422927 + 0 NA Intergenic Intergenic -230502 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding nan 0.977 nan 0.191 0.182 0.044 0.223 0.289 0.131 0.826 0.655 0.073 0.669 0.103 0.150 nan 0.204 0.189 0.263 0.377 0.442 3.741 1.251 0.295 0.269 2.733 3.339 0.604 0.792 1.132 0.855 0.091 0.118 4.827 3.860 0.286 0.621 0.998 0.720 0.015 0.097 1.074 0.016 0.223 0.073 0.302 0.550 0.027 0.058 4481 chr2 121624193 121659449 + 0 NA intron (NM_005270, intron 1 of 12) intron (NM_005270, intron 1 of 12) 86954 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 1.353 nan nan 0.063 0.179 0.100 2.175 0.172 0.064 0.058 0.085 0.085 1.081 0.037 0.075 0.548 0.562 0.313 0.354 1.229 1.403 0.152 0.102 0.606 0.625 0.510 0.732 2.720 2.277 0.901 0.935 0.270 0.365 0.149 0.121 0.364 0.658 0.591 0.397 2.601 0.452 0.054 0.066 2.175 0.085 0.643 0.023 0.112 0.179 1289 chr11 6341979 6355774 + 0 NA Intergenic MSTD|LTR|ERVL-MaLR -7136 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 PRKCDBP CAVIN3|HSRBC|SRBC|cavin-3 protein kinase C delta binding protein protein-coding 0.528 1.197 0.674 0.373 0.232 0.118 0.139 0.811 0.187 0.897 0.484 0.892 0.440 0.014 0.082 0.553 0.269 0.239 0.433 0.268 0.361 8.093 2.805 0.176 0.215 0.178 0.308 1.289 1.174 0.416 0.260 0.167 0.293 1.895 1.867 0.103 0.199 1.988 1.054 0.026 0.204 0.361 0.035 0.139 0.892 0.071 0.107 0.043 0.045 8280 chr9 130061723 130076208 + 0 NA intron (NM_032293, intron 2 of 27) AluY|SINE|Alu 42209 NM_032293 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding nan 1.058 0.993 0.327 0.379 0.176 0.131 0.342 0.146 0.075 0.098 0.373 0.983 0.045 0.074 0.251 0.175 0.256 0.472 0.552 0.741 nan 0.195 0.328 0.367 0.727 1.107 1.605 1.707 6.682 5.540 0.154 0.196 0.158 0.181 2.528 4.800 0.744 0.575 0.091 0.098 0.040 0.093 0.131 0.373 0.732 0.358 0.034 1.704 7159 chr7 11012679 11025313 + 0 NA intron (NR_033436, intron 2 of 16) intron (NR_033436, intron 2 of 16) 5497 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding nan 2.035 nan 1.887 2.628 1.581 1.934 0.812 0.155 0.470 0.230 2.884 3.602 1.371 0.208 nan 3.233 1.949 2.434 3.204 2.663 2.610 1.372 12.989 12.812 2.140 2.712 3.575 5.373 2.411 2.353 0.994 1.833 3.116 3.313 2.875 3.319 1.509 0.943 1.704 1.318 0.657 1.138 1.934 2.884 0.658 1.555 0.853 0.946 841 chr1 210110046 210118150 + 0 NA intron (NM_001146264, intron 1 of 8) L3|LINE|CR1 2579 NR_027459 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 1.403 2.440 0.935 0.727 2.230 1.643 2.055 0.367 0.059 1.259 0.505 2.693 nan 0.172 0.104 1.807 2.406 0.330 0.369 4.972 4.868 nan 1.151 0.368 0.400 4.801 nan 2.979 4.543 2.423 2.517 1.232 2.220 2.078 2.142 3.490 4.201 2.177 1.084 1.513 0.761 0.378 1.048 2.055 2.693 0.488 0.013 0.512 0.429 5548 chr3 133088815 133104191 + 0 NA intron (NM_001282865, intron 2 of 3) intron (NM_001282865, intron 2 of 3) -22336 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 0.986 nan nan 0.132 0.635 0.251 0.369 0.321 0.137 0.194 0.125 0.327 0.299 0.014 0.089 1.089 1.059 9.372 5.063 0.809 0.827 1.164 0.447 1.985 2.181 0.645 1.204 0.222 0.377 nan 0.618 0.190 0.426 0.076 0.182 0.596 1.383 1.052 0.720 0.065 0.126 0.025 0.093 0.369 0.327 0.089 0.020 0.026 0.546 8324 chr9 137297035 137306960 + 0 NA intron (NM_001291921, intron 3 of 8) intron (NM_001291921, intron 3 of 8) 3569 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding nan 2.532 0.831 0.203 1.181 0.501 2.965 1.649 0.468 0.094 0.083 3.353 4.493 0.202 0.036 0.929 0.814 1.701 4.236 2.524 2.629 nan 0.135 1.449 1.365 0.596 0.999 2.974 4.548 1.232 1.131 0.673 0.727 1.728 2.561 0.350 0.223 1.708 0.793 3.638 1.534 0.334 0.207 2.965 3.353 0.940 2.783 0.270 0.074 4176 chr2 2641645 2671458 + 0 NA Intergenic Intergenic -321466 NM_015025 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 0.460 0.612 1.149 0.470 0.833 0.448 0.437 0.035 0.059 0.590 0.256 2.266 2.747 0.040 0.066 0.433 0.689 0.247 0.231 2.490 2.609 1.339 0.432 0.358 0.366 0.427 0.785 2.909 2.628 1.598 1.680 0.287 0.349 0.284 0.197 0.152 0.225 1.329 0.864 2.477 1.298 0.039 0.059 0.437 2.266 0.572 2.363 0.047 0.025 7557 chr7 155246692 155266245 + 0 NA 3' UTR (NM_001427, exon 2 of 2) 3' UTR (NM_001427, exon 2 of 2) 5644 NM_001427 2020 Hs.134989 NM_001427 ENSG00000164778 EN2 - engrailed homeobox 2 protein-coding 0.462 0.454 nan 0.127 0.189 0.149 1.050 0.077 0.057 0.135 0.143 0.122 0.557 1.140 0.099 4.385 4.525 1.988 1.886 1.187 1.002 0.189 0.061 0.110 0.102 0.141 0.222 0.128 0.155 0.361 0.239 4.090 7.321 0.097 0.131 0.063 0.161 0.452 0.457 1.329 0.327 0.005 0.057 1.050 0.122 0.229 0.015 3.226 0.025 5150 chr21 44559001 44586547 + 0 NA Intergenic L2a|LINE|L2 -11572 NR_133678 106780825 NR_133678 LOC106780825 - FOXM1-regulated, gastric cancer associated-like ncRNA nan 1.243 0.991 0.230 0.625 0.340 0.436 0.157 0.090 0.091 0.103 0.300 0.719 0.075 0.069 1.280 1.426 7.102 9.797 0.723 0.734 nan 0.265 0.605 0.748 0.497 nan 0.925 1.271 0.817 0.665 0.925 1.194 0.279 0.285 0.506 0.704 1.298 0.879 0.500 0.335 0.038 0.081 0.436 0.300 0.130 0.290 0.461 0.439 3779 chr18 45215197 45230487 + 0 NA Intergenic Intergenic 234128 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding nan 0.868 1.070 0.087 0.296 0.180 0.635 0.069 0.053 0.052 0.076 0.110 0.319 0.021 0.093 0.382 0.189 0.148 0.240 0.535 0.525 0.824 0.279 0.116 0.156 0.083 0.185 0.187 0.170 0.318 0.144 0.156 0.091 0.127 0.239 0.755 nan 0.496 0.748 0.018 0.052 0.037 0.036 0.635 0.110 0.007 0.013 0.013 3.545 7669 chr8 49819643 49838543 + 0 NA Intergenic Intergenic 4906 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 1.721 nan 2.109 0.085 0.193 0.084 0.413 0.803 0.111 0.829 0.400 0.044 1.319 0.027 0.134 0.411 0.334 0.706 1.555 1.535 1.171 2.378 0.485 0.432 0.446 0.500 0.720 0.109 0.113 0.816 0.603 0.143 0.187 2.574 3.757 0.370 0.605 2.211 1.465 0.003 0.137 0.510 0.117 0.413 0.044 0.221 2.545 0.031 0.248 1018 chr10 12083592 12085979 + 0 NA promoter-TSS (NM_015542) promoter-TSS (NM_015542) 55 NM_015542 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense transcripts homolog (yeast) protein-coding nan 4.329 5.506 7.490 7.458 3.331 7.274 9.851 0.738 2.977 0.995 7.268 12.435 5.730 0.179 12.037 11.409 11.499 15.730 9.013 11.306 16.264 12.474 13.112 13.852 6.405 7.356 10.478 17.905 8.117 7.477 8.066 10.208 5.389 6.952 7.906 7.453 3.767 1.634 3.057 4.488 1.446 2.427 7.274 7.268 1.646 3.274 2.949 3.270 1125 chr10 63591947 63603869 + 0 NA Intergenic Intergenic -63105 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 0.670 nan 1.308 0.089 0.352 0.147 0.043 2.576 0.121 0.074 0.096 0.622 0.360 4.580 0.138 0.456 0.284 6.688 10.744 0.469 0.529 0.339 0.117 0.831 0.847 0.560 0.747 0.566 0.455 0.308 0.161 0.159 0.189 0.575 0.760 0.294 nan 0.791 0.508 0.019 0.044 0.119 0.040 0.043 0.622 0.033 0.068 0.034 0.083 7439 chr7 114046090 114073649 + 0 NA intron (NM_148898, intron 1 of 17) intron (NM_148898, intron 1 of 17) 4817 NM_014491 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding nan 0.862 2.680 0.164 1.326 0.728 0.506 0.292 0.082 1.133 0.807 3.061 3.425 0.157 0.142 3.033 2.508 1.735 1.548 0.354 0.523 3.538 3.739 0.275 0.280 3.218 3.781 0.736 1.097 1.666 1.319 0.337 0.563 3.625 4.289 1.237 1.852 0.848 0.649 0.068 3.095 0.929 0.610 0.506 3.061 0.141 0.493 0.061 0.625 1058 chr10 18937889 18951010 + 0 NA Intergenic Intergenic -3864 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding nan 1.889 1.788 2.500 2.504 1.225 0.795 3.716 0.293 0.993 0.592 2.784 2.883 1.768 0.103 3.820 3.674 3.393 5.017 3.341 2.815 8.731 4.641 5.346 5.370 2.613 3.191 2.915 4.744 1.992 2.074 1.345 2.522 1.817 2.050 2.772 3.572 1.587 0.815 0.747 0.692 0.181 1.271 0.795 2.784 0.312 1.315 1.019 1.018 4989 chr20 48803611 48812635 + 0 NA exon (NM_001285878, exon 1 of 1) exon (NM_001285878, exon 1 of 1) 483 NR_125739 101927559 Hs.442486 NR_125739 ENSG00000277449 CEBPB-AS1 - CEBPB antisense RNA 1 ncRNA nan nan 2.965 5.235 3.727 1.970 2.589 5.164 0.251 2.165 0.507 3.134 10.980 5.562 0.150 3.693 7.566 2.011 3.936 1.983 1.763 6.434 2.806 10.387 9.970 2.157 2.869 5.561 6.119 nan 4.810 8.119 8.884 1.506 1.974 2.767 5.465 1.525 1.031 2.470 5.496 0.287 3.366 2.589 3.134 0.949 2.355 2.083 0.985 8181 chr9 86588874 86611180 + 0 NA intron (NM_024945, intron 1 of 2) intron (NM_024945, intron 1 of 2) -4330 NM_031262 3190 Hs.522257 NM_002140 ENSG00000165119 HNRNPK AUKS|CSBP|HNRPK|TUNP heterogeneous nuclear ribonucleoprotein K protein-coding 2.677 2.004 2.638 3.219 6.949 3.917 1.853 1.359 0.195 1.685 0.872 4.034 3.011 1.162 0.092 2.235 1.828 3.388 4.218 4.902 5.083 2.483 1.479 4.028 4.279 1.562 1.975 4.185 6.364 2.188 2.321 1.657 2.926 3.777 4.776 3.370 2.506 2.032 1.132 0.990 1.127 0.763 0.996 1.853 4.034 0.660 0.833 0.578 0.704 3775 chr18 43912845 43925034 + 0 NA intron (NM_001256758, intron 1 of 5) intron (NM_001256758, intron 1 of 5) 4752 NM_001256758 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|RNF111L2 ring finger protein 165 protein-coding nan 1.471 2.765 1.342 1.367 0.894 3.400 0.243 0.988 0.703 2.465 2.825 0.278 0.072 2.513 3.118 0.461 0.647 6.793 5.955 3.734 1.278 0.643 0.730 1.454 2.086 1.889 2.521 3.237 4.057 0.861 1.658 1.981 1.463 3.695 nan 3.611 2.273 2.205 2.143 0.511 1.711 3.400 2.465 0.859 0.042 0.456 1.700 3780 chr18 45455869 45459903 + 0 NA promoter-TSS (NM_005901) promoter-TSS (NM_005901) -369 NM_001003652 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding nan 4.269 6.331 7.716 5.912 3.191 11.950 2.123 0.206 1.593 0.713 8.259 12.287 4.201 0.092 7.791 8.645 8.366 10.998 14.242 10.820 13.561 8.346 11.573 11.123 2.755 3.827 6.557 10.745 6.195 6.655 4.145 7.434 9.556 8.772 5.852 nan 5.149 3.072 6.011 4.954 2.610 3.576 11.950 8.259 1.638 3.779 1.695 3.951 319 chr1 55676658 55682790 + 0 NA intron (NM_015306, intron 1 of 67) intron (NM_015306, intron 1 of 67) 1315 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 5.551 2.759 5.522 2.526 4.437 2.612 3.783 2.172 0.426 1.914 0.997 5.081 6.269 3.486 0.092 4.085 4.991 3.362 6.077 11.396 10.606 4.141 2.065 10.637 11.444 3.434 5.134 5.965 10.125 5.091 5.133 4.578 9.568 2.591 2.447 5.298 nan 2.559 1.438 3.403 3.391 0.436 1.538 3.783 5.081 0.974 2.058 4.667 1.576 1710 chr11 122924669 122944107 + 0 NA Intergenic Intergenic -1345 NM_153201 3312 Hs.180414 NM_006597 ENSG00000109971 HSPA8 HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71 heat shock protein family A (Hsp70) member 8 protein-coding 1.681 2.411 1.759 2.612 4.202 2.072 2.454 1.477 0.226 2.148 1.114 3.006 5.662 2.450 0.125 4.285 3.969 3.013 4.052 4.585 5.095 4.537 2.876 7.304 7.920 3.411 4.015 3.155 4.010 4.233 4.149 8.405 9.991 3.161 3.976 2.708 nan 2.068 1.294 4.282 2.719 0.822 1.502 2.454 3.006 0.390 1.076 4.229 1.089 4783 chr2 239193280 239200033 + 0 NA intron (NM_022817, intron 1 of 22) intron (NM_022817, intron 1 of 22) 551 NM_022817 8864 Hs.58756 NM_003894 ENSG00000132326 PER2 FASPS|FASPS1 period circadian clock 2 protein-coding 5.141 nan 7.520 2.018 2.548 1.311 1.819 0.757 0.024 1.459 0.425 6.282 3.656 0.787 0.174 3.178 5.370 3.676 8.332 2.379 1.942 3.339 2.756 4.708 5.034 1.531 2.263 5.683 7.480 1.844 2.572 3.714 5.249 5.846 4.153 2.223 1.690 1.940 1.338 0.866 2.870 0.819 2.152 1.819 6.282 0.376 4.480 2.830 0.677 5476 chr3 114563223 114602014 + 0 NA intron (NR_121662, intron 2 of 6) intron (NR_121662, intron 2 of 6) -9262 NR_126422 104413890 Hs.612732 NR_126422 ENSG00000239946 ZBTB20-AS3 - ZBTB20 antisense RNA 3 ncRNA 1.279 nan 1.114 0.156 5.009 2.686 0.281 0.283 0.104 1.063 0.608 1.363 0.358 0.039 0.071 0.921 0.573 1.000 0.874 0.833 nan 5.519 2.813 0.832 0.815 nan 4.419 0.474 0.434 1.120 0.705 0.241 0.299 1.263 1.442 0.450 1.414 1.498 0.954 1.499 0.255 0.302 0.076 0.281 1.363 0.257 0.358 0.074 0.360 4456 chr2 105458347 105490167 + 0 NA 3' UTR (NM_006236, exon 1 of 1) 3' UTR (NM_006236, exon 1 of 1) 3731 NM_006236 5455 Hs.248158 NM_006236 ENSG00000198914 POU3F3 BRN1|OTF8|brain-1|oct-8 POU class 3 homeobox 3 protein-coding 0.407 nan 0.397 0.059 0.212 0.112 1.870 0.066 0.025 0.225 0.112 0.064 10.667 0.035 0.062 0.256 0.240 0.356 0.451 3.417 2.814 0.130 0.071 0.121 0.126 0.148 0.255 0.505 0.745 4.585 6.448 0.210 0.559 0.035 0.067 0.076 0.158 1.201 0.740 0.021 0.011 0.003 2.163 1.870 0.064 0.023 0.038 0.216 0.031 600 chr1 157962117 158052563 + 0 NA intron (NM_001286349, intron 1 of 12) MIRb|SINE|MIR 44277 NM_018240 55243 Hs.272234 NM_018240 ENSG00000183853 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding nan nan 2.289 0.054 0.180 0.074 0.115 1.661 0.216 0.094 0.138 0.050 0.318 0.187 0.097 1.051 1.684 0.846 2.505 0.264 nan 0.124 0.069 0.256 0.268 0.972 1.426 0.499 0.705 0.644 0.441 0.711 0.898 0.544 0.443 1.362 3.397 0.801 0.639 0.025 0.187 0.136 0.043 0.115 0.050 0.048 0.022 0.157 0.864 3817 chr18 52980024 52995103 + 0 NA intron (NM_001243228, intron 8 of 19) intron (NM_001243228, intron 8 of 19) 1527 NM_001243235 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 1.867 1.301 0.245 1.833 0.913 0.483 2.063 0.106 1.038 0.769 0.889 0.364 1.519 0.063 2.968 3.000 4.535 5.279 5.249 4.990 2.037 0.780 1.419 1.496 2.613 3.138 1.050 1.026 10.404 10.980 0.872 1.424 5.899 6.671 2.815 3.068 7.507 3.500 0.265 0.387 1.420 3.526 0.483 0.889 1.028 1.045 0.746 1.371 2497 chr14 24834064 24849252 + 0 NA exon (NM_001136022, exon 4 of 10) exon (NM_001136022, exon 4 of 10) 3299 NM_001288802 4776 Hs.77810 NM_004554 ENSG00000100968 NFATC4 NF-AT3|NF-ATC4|NFAT3 nuclear factor of activated T-cells 4 protein-coding nan 2.435 2.199 2.515 3.506 1.837 3.053 2.664 0.382 0.674 0.496 2.515 4.281 0.871 0.111 0.590 1.203 1.363 1.861 4.943 4.656 1.353 0.518 2.564 2.823 0.798 1.168 5.774 nan 5.250 4.888 1.341 2.756 1.850 1.411 1.297 2.426 1.345 0.747 2.484 7.645 0.589 2.332 3.053 2.515 1.444 1.576 2.773 0.810 8413 chrX 135960750 135968630 + 0 NA Intergenic L2a|LINE|L2 -1751 NM_001164803 27316 Hs.380118 NM_002139 ENSG00000147274 RBMX HNRNPG|HNRPG|MRXS11|RBMXP1|RBMXRT|RNMX|hnRNP-G RNA binding motif protein, X-linked protein-coding 3.468 1.991 2.927 2.229 3.969 1.728 2.162 0.846 0.121 0.973 0.262 1.744 5.391 1.398 0.047 3.402 3.387 2.854 4.064 4.904 4.841 3.772 1.508 5.827 5.794 3.079 4.233 3.615 5.830 9.095 9.385 2.581 4.295 2.951 2.974 6.152 8.252 1.839 1.151 1.227 1.728 0.581 1.416 2.162 1.744 0.526 0.854 1.334 2.860 3839 chr18 55644480 55655570 + 0 NA Intergenic LTR81B|LTR|Gypsy -61585 NM_015277 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding nan 1.122 0.943 0.276 2.160 1.318 1.824 0.081 0.044 0.098 0.074 3.632 1.010 0.049 0.126 0.563 0.639 0.533 0.781 2.630 3.165 9.675 4.102 1.023 1.133 0.274 0.398 4.359 3.874 0.441 0.318 0.436 1.305 2.145 2.735 0.349 0.691 nan 2.033 1.910 5.803 0.555 0.604 1.824 3.632 0.156 0.147 1.392 0.167 3283 chr17 12658549 12672296 + 0 NA non-coding (NR_104607, exon 2 of 2) non-coding (NR_104607, exon 2 of 2) -27407 NM_001321166 9912 Hs.499758 NM_014859 ENSG00000006740 ARHGAP44 NPC-A-10|RICH2 Rho GTPase activating protein 44 protein-coding 0.619 0.414 0.458 1.369 4.547 1.858 0.066 0.043 0.058 0.058 0.052 0.095 0.257 0.025 0.045 0.437 0.398 0.187 nan 0.850 0.840 0.101 0.071 0.122 0.084 0.091 0.178 0.165 0.145 nan 0.549 0.074 0.087 0.045 0.036 0.153 0.212 0.100 0.131 0.024 0.020 0.006 0.066 0.095 0.007 0.030 0.021 0.030 4610 chr2 177016001 177030191 + 0 NA Intergenic Intergenic -5709 NM_006898 3232 Hs.93574 NM_006898 ENSG00000128652 HOXD3 HOX1D|HOX4|HOX4A|Hox-4.1 homeobox D3 protein-coding 1.192 0.984 0.647 0.446 0.825 0.316 1.193 0.079 0.028 1.950 1.105 1.851 3.690 0.038 0.081 3.190 3.483 1.223 1.674 2.523 1.940 1.778 0.902 2.891 2.905 2.828 3.532 4.762 7.870 2.892 3.335 2.975 4.085 1.402 1.166 0.257 0.453 1.286 0.769 1.010 0.057 0.262 0.707 1.193 1.851 0.375 0.529 1.549 0.070 7049 chr6 152527506 152531494 + 0 NA intron (NM_182961, intron 124 of 145) intron (NM_182961, intron 124 of 145) -22987 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding nan 0.931 0.748 2.348 0.478 0.324 1.155 0.130 0.124 1.545 0.429 0.270 1.682 0.028 0.097 0.556 0.232 0.294 0.415 0.521 nan 14.162 15.188 0.498 0.449 0.151 0.269 1.201 1.899 0.470 0.357 0.161 0.193 0.916 0.354 0.193 nan 0.450 0.315 0.042 0.200 0.059 1.155 0.270 0.049 0.511 0.060 6609 chr6 10308778 10317439 + 0 NA Intergenic Intergenic -99443 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 0.870 5.239 0.817 0.082 1.492 0.946 3.009 0.112 0.180 0.816 0.430 0.686 0.146 0.062 0.111 0.480 0.398 0.699 1.665 0.501 0.401 4.984 1.498 0.258 0.203 0.150 0.273 0.141 0.109 0.302 0.102 0.313 0.276 5.595 6.044 0.101 0.228 1.016 0.788 0.013 0.643 1.521 1.343 3.009 0.686 0.022 0.481 0.023 0.043 8337 chr9 139419704 139442081 + 0 NA intron (NM_017617, intron 2 of 33) intron (NM_017617, intron 2 of 33) 9346 NM_017617 4851 Hs.495473 NM_017617 ENSG00000148400 NOTCH1 AOS5|AOVD1|TAN1|hN1 notch 1 protein-coding nan 1.361 3.095 0.825 0.427 0.218 0.721 0.709 0.173 0.035 0.056 0.292 1.069 0.500 0.072 1.877 3.011 2.002 3.227 1.557 1.309 nan 0.190 1.492 1.654 0.193 0.346 0.558 0.697 2.278 2.094 1.313 2.481 0.347 0.360 0.457 0.647 0.420 0.314 1.351 0.417 0.047 1.044 0.721 0.292 0.718 0.164 0.800 0.182 4662 chr2 200294981 200328702 + 0 NA intron (NR_134967, intron 2 of 4) intron (NR_134967, intron 2 of 4) 10978 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 0.836 nan 0.904 4.319 1.720 0.946 1.295 0.413 0.100 0.767 0.617 1.090 5.354 0.503 0.085 0.626 0.579 1.108 1.062 3.744 3.100 0.337 0.136 1.054 1.055 1.233 1.713 1.625 2.233 0.585 0.484 0.535 0.874 1.789 2.391 0.738 1.128 1.041 0.575 0.033 2.853 0.488 1.103 1.295 1.090 0.130 1.263 0.264 0.247 6137 chr5 2684440 2714584 + 0 NA Intergenic Intergenic 52257 NM_001134222 153572 Hs.282089 NM_033267 ENSG00000170561 IRX2 IRXA2 iroquois homeobox 2 protein-coding 0.342 0.669 0.777 0.118 0.435 0.266 0.239 0.163 0.096 0.073 0.131 2.602 0.471 0.029 0.099 0.313 0.141 0.305 nan 0.882 0.978 0.092 0.060 0.045 0.035 0.156 0.304 nan 0.154 nan 0.319 0.150 0.197 0.053 0.093 0.056 0.124 0.177 nan 0.791 0.262 0.028 0.082 0.239 2.602 0.071 0.032 0.039 0.008 3156 chr16 66783383 66786540 + 0 NA promoter-TSS (NR_133569) promoter-TSS (NR_133569) 564 NM_006141 1783 Hs.369068 NM_006141 ENSG00000135720 DYNC1LI2 DNCLI2|LIC2 dynein cytoplasmic 1 light intermediate chain 2 protein-coding nan nan 3.802 5.708 4.629 2.484 4.961 2.533 0.288 1.190 0.842 6.136 6.555 3.086 0.098 7.342 6.157 4.471 6.597 7.606 8.423 6.415 5.357 17.199 18.301 2.505 nan 5.733 8.837 8.856 8.557 5.003 7.794 3.150 3.284 5.011 3.769 4.195 1.822 2.238 2.732 0.391 1.755 4.961 6.136 1.331 2.468 0.877 1.096 2728 chr14 89762720 89773481 + 0 NA intron (NM_001085471, intron 3 of 6) AluSg4|SINE|Alu 115354 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 1.847 2.482 nan 3.215 0.979 0.439 1.107 1.688 0.179 1.730 0.577 2.941 8.259 0.090 0.142 0.280 0.193 0.704 0.548 5.346 4.193 1.616 1.951 0.421 0.459 1.425 1.994 5.289 11.284 0.766 0.420 0.120 0.198 0.475 0.553 0.295 0.454 nan 2.571 5.191 2.991 0.142 0.148 1.107 2.941 0.022 0.969 0.073 0.093 3992 chr19 18127569 18142521 + 0 NA Intergenic Intergenic 16068 NM_001286826 27106 Hs.515249 NM_015683 ENSG00000105643 ARRDC2 CLONE24945|PP2703 arrestin domain containing 2 protein-coding 2.420 1.317 1.263 1.649 0.479 0.242 0.311 0.437 0.195 0.357 0.152 0.184 0.587 0.152 0.090 0.291 0.169 0.566 1.231 0.562 0.612 0.728 0.229 0.241 0.192 1.704 2.781 2.890 3.807 3.727 2.917 0.234 0.161 0.853 1.123 1.338 2.515 2.115 1.123 0.145 0.164 0.211 0.053 0.311 0.184 1.453 1.757 0.026 0.767 3439 chr17 46360755 46378685 + 0 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -1989 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 0.831 1.144 nan 0.123 2.409 1.386 0.058 0.085 0.099 0.871 0.431 0.374 0.299 0.345 0.136 1.237 2.976 0.153 0.156 0.433 nan 1.838 0.618 0.442 0.533 0.182 0.259 2.697 nan 0.544 0.207 0.256 0.502 2.376 1.312 0.150 0.274 4.035 2.087 0.027 0.083 0.613 0.035 0.058 0.374 0.011 0.089 0.098 0.048 7694 chr8 61563318 61568377 + 0 NA Intergenic Intergenic -25477 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 8.310 2.877 9.430 5.331 4.238 2.084 3.214 0.423 0.076 3.218 1.662 6.668 7.816 2.478 0.085 2.507 3.766 2.104 3.336 14.097 11.041 7.761 2.309 2.356 2.545 2.330 nan 3.631 5.737 nan 9.313 1.991 4.332 9.340 9.528 4.443 5.777 5.267 2.883 1.618 6.298 2.543 2.279 3.214 6.668 1.247 5.763 1.237 1.888 1886 chr12 28099451 28102415 + 0 NA Intergenic Intergenic 21961 NM_198966 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding nan nan nan 0.264 0.348 0.215 0.109 0.006 0.054 0.114 0.040 0.262 0.074 0.138 0.206 0.181 0.348 0.502 0.484 0.743 0.120 0.145 0.226 0.492 0.402 0.699 0.219 0.180 0.488 0.171 0.186 0.179 0.228 0.184 0.124 0.478 0.812 0.318 0.065 0.149 0.107 0.320 0.215 0.040 4.578 0.033 0.066 0.123 7222 chr7 27165620 27181029 + 0 NA Intergenic Intergenic -2925 NM_002141 3201 Hs.533357 NM_002141 ENSG00000197576 HOXA4 HOX1|HOX1D homeobox A4 protein-coding 1.557 1.234 0.999 0.069 0.857 0.384 0.160 0.132 0.135 0.438 0.252 1.794 1.036 2.289 0.171 7.237 13.139 9.029 nan 2.371 2.153 0.321 0.138 0.611 0.678 0.835 1.257 1.997 2.484 1.490 1.717 2.443 3.573 0.614 0.457 0.271 nan 1.619 0.966 0.469 0.857 0.247 0.367 0.160 1.794 0.309 0.040 1.601 0.097 685 chr1 179089090 179153836 + 0 NA intron (NM_007314, intron 1 of 11) intron (NM_007314, intron 1 of 11) -9239 NM_001136000 27 Hs.159472 NM_005158 ENSG00000143322 ABL2 ABLL|ARG ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding nan nan nan 0.177 0.261 0.160 0.301 1.938 0.485 0.171 0.199 0.160 0.428 0.141 0.149 1.017 0.816 1.088 1.776 nan 0.575 0.304 0.133 0.820 0.848 0.908 1.244 0.458 0.500 0.566 0.374 0.978 1.180 0.160 0.210 1.763 nan 0.472 0.495 0.071 0.282 0.034 0.114 0.301 0.160 0.056 0.049 0.468 2.403 6337 chr5 76924334 76942350 + 0 NA intron (NM_032109, intron 1 of 2) CpG-20821 1180 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 1.386 nan 0.561 0.623 0.716 0.365 0.483 0.165 0.126 0.147 0.137 0.511 0.861 0.836 0.132 0.326 0.310 0.250 0.253 2.171 1.504 nan 0.603 0.379 0.427 0.278 nan 1.583 2.295 1.852 1.314 0.317 0.607 0.724 0.485 0.219 0.504 0.299 0.274 0.710 11.379 0.126 0.282 0.483 0.511 0.076 0.491 0.107 0.089 6863 chr6 85469551 85487380 + 0 NA Intergenic Intergenic -4511 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box 18 protein-coding 0.576 0.577 nan 0.498 0.215 0.154 0.949 0.947 0.252 0.885 0.565 0.054 0.232 0.453 0.103 0.193 0.065 0.955 1.587 0.141 0.181 1.792 0.716 1.067 1.151 0.143 0.274 0.563 0.615 0.309 0.127 0.120 0.122 0.063 0.110 0.091 0.195 0.134 0.174 0.022 0.029 0.016 0.009 0.949 0.054 0.016 3.817 0.011 0.048 901 chr1 227125365 227136426 + 0 NA intron (NM_020247, intron 1 of 14) intron (NM_020247, intron 1 of 14) 2957 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 3.151 nan 3.855 4.818 2.576 1.247 3.109 1.192 0.147 3.971 1.668 2.953 3.234 1.305 0.103 3.015 3.566 3.145 5.054 5.600 nan 8.933 2.881 3.144 3.219 2.615 3.266 4.794 6.190 3.164 4.352 0.799 1.285 2.849 3.112 3.054 3.665 2.864 1.979 2.931 1.697 0.397 1.567 3.109 2.953 1.044 1.751 0.405 1.012 3186 chr16 79023704 79049238 + 0 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 598151 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 0.594 0.724 nan 2.716 4.580 2.399 0.568 0.044 0.031 0.589 0.256 2.791 1.405 0.017 0.064 0.309 0.216 0.390 1.511 0.897 0.907 3.659 1.342 0.339 0.294 0.074 0.147 3.284 4.287 0.793 0.616 0.112 0.181 0.002 0.002 0.191 0.308 3.896 1.748 1.710 1.768 0.007 0.183 0.568 2.791 0.373 0.056 0.027 0.053 4185 chr2 3504899 3512756 + 0 NA intron (NM_018269, intron 2 of 3) T-rich|Low_complexity|Low_complexity 12691 NM_001306077 55256 Hs.502773 NM_018269 ENSG00000182551 ADI1 APL1|ARD|Fe-ARD|HMFT1638|MTCBP1|Ni-ARD|SIPL|mtnD acireductone dioxygenase 1 protein-coding 0.923 0.618 0.751 3.816 2.106 0.794 0.210 0.029 0.068 0.520 0.410 4.521 0.693 0.124 0.131 0.406 0.483 0.329 0.507 5.200 5.993 3.594 1.962 0.195 0.251 0.370 0.758 3.171 6.821 0.483 0.293 0.195 0.222 0.468 0.842 0.731 1.876 4.578 1.908 0.092 0.296 0.085 0.252 0.210 4.521 0.099 1.265 0.050 0.424 7494 chr7 134191189 134215160 + 0 NA Intergenic MER4B-int|LTR|ERV1 -9170 NM_020299 57016 Hs.116724 NM_020299 ENSG00000198074 AKR1B10 AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI aldo-keto reductase family 1 member B10 protein-coding nan nan nan 0.106 0.175 0.094 0.187 0.183 0.154 0.119 0.100 0.045 0.254 0.059 0.148 0.525 0.334 0.218 0.301 0.420 0.576 nan 0.104 0.372 0.374 0.226 nan 0.424 0.494 nan 3.032 0.303 0.382 0.076 0.149 1.102 4.396 0.755 nan 0.088 0.190 0.012 0.263 0.187 0.045 0.406 0.080 0.091 0.709 791 chr1 203416047 203436749 + 0 NA Intergenic L2a|LINE|L2 -18485 NM_002725 5549 Hs.632481 NM_002725 ENSG00000188783 PRELP MST161|MSTP161|SLRR2A proline and arginine rich end leucine rich repeat protein protein-coding 1.483 1.074 1.438 0.195 0.566 0.326 0.892 0.148 0.155 0.697 0.324 0.541 1.084 0.042 0.109 0.566 0.740 0.407 0.711 0.695 0.799 3.702 1.255 nan nan 1.873 2.423 0.501 0.589 0.767 0.422 0.198 0.266 1.837 1.841 0.520 1.499 2.174 1.150 0.021 0.415 1.111 0.093 0.892 0.541 0.475 0.034 0.072 0.214 2231 chr13 21384292 21424362 + 0 NA intron (NM_022459, intron 6 of 22) intron (NM_022459, intron 6 of 22) -56230 NM_001318939 221143 Hs.26674 NM_174928 ENSG00000150456 EEF1AKMT1 ESP13|N6AMT2 eukaryotic translation elongation factor 1 alpha lysine methyltransferase 1 protein-coding 1.167 1.054 1.368 0.291 0.143 0.094 0.058 1.883 0.285 0.141 0.100 0.120 0.247 0.125 0.090 0.499 0.475 0.361 nan 0.799 0.933 0.617 0.207 0.243 0.198 0.617 1.010 0.472 0.498 0.736 0.330 0.281 0.389 0.187 0.192 2.508 7.231 0.900 0.606 0.043 0.085 0.040 0.079 0.058 0.120 0.024 0.138 0.059 1.964 8120 chr9 35903509 35914640 + 0 NA promoter-TSS (NR_024283) promoter-TSS (NR_024283) -406 NR_024283 158376 Hs.302677 NR_024283 ENSG00000235387 LINC00961 SPAR long intergenic non-protein coding RNA 961 ncRNA 1.682 nan 1.326 0.261 0.297 0.185 0.679 1.940 0.304 0.350 0.200 0.175 2.577 0.204 0.086 0.258 0.209 0.949 1.552 0.884 0.877 0.825 0.258 0.290 0.269 5.124 6.328 1.018 0.895 1.730 1.616 0.360 0.430 0.114 0.122 0.916 2.540 3.206 2.149 2.254 0.241 0.009 0.043 0.679 0.175 0.123 0.728 0.053 0.765 1561 chr11 85950243 85958168 + 0 NA Intergenic Intergenic -1221 NM_001308007 8726 Hs.503510 NM_003797 ENSG00000074266 EED HEED|WAIT1 embryonic ectoderm development protein-coding 1.837 2.057 1.574 2.944 2.875 1.864 1.384 0.830 0.060 1.426 0.711 1.934 5.524 2.396 0.087 6.737 5.885 7.426 6.005 5.847 6.541 4.205 3.198 11.327 12.426 3.423 3.660 4.752 6.093 4.605 3.888 3.212 5.500 4.082 4.761 2.982 3.058 2.289 1.270 2.390 2.184 0.864 1.781 1.384 1.934 4.023 1.118 1.386 0.966 6316 chr5 71196518 71205204 + 0 NA Intergenic Intergenic 185871 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 1.453 nan 1.227 0.102 6.179 3.379 3.688 0.252 0.038 0.616 0.316 0.128 1.550 0.025 0.068 0.267 0.572 0.511 0.559 0.422 0.455 10.475 3.860 0.128 0.158 0.828 nan 0.644 0.674 1.978 1.764 0.599 1.669 8.781 12.082 0.896 3.404 2.414 0.944 0.287 1.107 3.127 0.458 3.688 0.128 0.224 0.233 2.457 1.371 6670 chr6 25310315 25337911 + 0 NA intron (NM_001173977, intron 2 of 36) intron (NM_001173977, intron 2 of 36) 44457 NM_001173977 55604 Hs.649550 NM_017640 ENSG00000079691 CARMIL1 CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 capping protein regulator and myosin 1 linker 1 protein-coding 1.761 1.030 nan 0.318 0.297 0.192 0.739 0.702 0.131 0.220 0.143 0.455 nan 0.121 0.110 0.480 0.451 0.405 nan 0.323 0.459 nan 0.776 0.391 0.370 3.679 5.073 0.471 0.551 0.623 0.454 0.211 0.280 2.437 3.329 0.786 1.861 0.867 0.676 0.121 0.135 0.991 0.133 0.739 0.455 0.384 0.048 0.039 0.318 3199 chr16 84763198 84769190 + 0 NA intron (NM_001272075, intron 2 of 14) AluSz|SINE|Alu 32639 NM_005153 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding nan 1.428 1.014 1.337 0.684 0.367 0.383 1.483 0.160 0.491 0.313 1.224 1.283 0.866 0.058 0.708 0.782 0.965 2.264 0.596 0.577 1.064 0.327 1.135 1.126 2.326 2.476 5.753 8.621 0.960 0.750 0.422 0.585 0.497 2.009 0.540 1.376 1.705 0.943 0.675 0.370 0.078 0.147 0.383 1.224 0.307 4.857 0.202 0.123 5453 chr3 107882689 107909288 + 0 NA intron (NM_018010, intron 6 of 10) intron (NM_018010, intron 6 of 10) 45429 NM_018010 55081 Hs.412196 NM_018010 ENSG00000114446 IFT57 ESRRBL1|HIPPI|MHS4R2 intraflagellar transport 57 protein-coding nan nan 0.934 0.124 3.977 1.992 0.168 0.189 0.143 1.941 1.331 2.002 0.199 0.024 0.079 0.323 0.264 0.446 0.471 0.849 1.275 6.914 4.285 0.257 0.249 0.525 0.805 0.217 0.237 0.663 0.321 0.124 0.184 1.601 1.899 0.356 0.766 2.071 0.870 0.044 0.073 0.519 0.105 0.168 2.002 0.036 0.181 0.082 0.155 3171 chr16 72938957 73106200 + 0 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 59696 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 0.840 1.452 nan 1.417 1.111 0.552 0.796 0.812 0.152 0.389 0.266 1.157 1.775 0.370 0.080 2.443 2.781 5.307 7.082 1.321 1.228 0.698 0.223 3.959 4.067 0.828 1.254 1.675 2.378 1.457 1.098 0.930 1.638 0.309 0.394 0.375 0.616 1.339 0.855 0.543 0.582 0.047 0.193 0.796 1.157 0.159 1.091 0.705 0.195 4735 chr2 223517742 223522355 + 0 NA intron (NM_005687, intron 1 of 16) intron (NM_005687, intron 1 of 16) 1026 NR_130154 10056 Hs.471452 NM_005687 ENSG00000116120 FARSB FARSLB|FRSB|HSPC173|PheHB|PheRS phenylalanyl-tRNA synthetase beta subunit protein-coding nan 3.667 3.958 5.793 6.972 3.283 6.181 2.823 0.278 3.596 2.196 6.726 nan 3.491 0.252 10.239 7.649 8.647 11.101 8.376 8.940 6.905 5.763 16.925 18.038 5.271 6.520 9.506 15.874 10.809 10.293 8.489 9.296 5.328 7.393 7.515 nan 4.221 2.285 3.356 2.253 0.993 1.714 6.181 6.726 1.758 2.224 2.384 2.621 82 chr1 11066855 11077456 + 0 NA promoter-TSS (NM_007375) promoter-TSS (NM_007375) -524 NM_007375 23435 Hs.300624 NM_007375 ENSG00000120948 TARDBP ALS10|TDP-43 TAR DNA binding protein protein-coding 2.459 1.713 nan 8.716 2.084 1.302 1.801 1.333 0.274 0.521 0.393 1.264 3.967 1.507 0.145 2.833 2.511 3.380 4.632 5.069 6.054 2.142 2.160 7.150 nan 1.948 nan 9.452 11.480 nan 3.357 2.602 2.778 1.293 1.860 4.044 2.766 2.046 0.927 1.824 1.160 0.251 0.360 1.801 1.264 0.531 0.872 0.344 0.771 69 chr1 9596361 9633205 + 0 NA intron (NM_032315, intron 2 of 6) intron (NM_032315, intron 2 of 6) 15255 NM_032315 84275 Hs.568613 NM_032315 ENSG00000171612 SLC25A33 BMSC-MCP|PNC1 solute carrier family 25 member 33 protein-coding 1.457 nan 1.198 4.331 0.829 0.435 0.949 0.718 0.460 0.424 0.307 0.263 2.123 0.551 0.144 1.111 1.327 3.172 3.665 1.142 1.232 0.648 0.243 1.691 1.726 1.523 nan nan 5.622 nan 0.668 0.547 0.896 0.258 0.256 1.063 2.217 0.935 0.564 1.532 2.126 0.052 0.948 0.949 0.263 0.177 0.314 0.705 0.593 7662 chr8 43092234 43097682 + 0 NA Intergenic SAR|Satellite|Satellite -52627 NM_001002920 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 18.865 18.456 16.489 5.947 12.390 8.563 3.898 8.860 22.028 4.852 8.179 3.832 6.917 2.781 10.022 15.529 10.092 0.923 4.139 12.326 19.015 8.520 8.615 9.256 10.417 12.649 10.932 10.327 9.811 21.665 9.046 16.963 18.157 3.308 6.805 10.463 11.164 11.486 9.908 1.788 3.948 1.643 1.428 3.898 3.832 0.548 1.133 6.149 3.607 2055 chr12 83252551 83275571 + 0 NA intron (NM_152588, intron 2 of 11) intron (NM_152588, intron 2 of 11) 183127 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane and tetratricopeptide repeat containing 2 protein-coding 1.027 0.808 0.680 0.086 0.479 0.307 0.786 1.265 0.217 0.116 0.176 0.120 0.325 0.071 0.091 0.431 0.309 0.387 0.324 0.539 0.586 0.255 0.120 1.086 1.173 5.054 5.847 0.578 0.615 0.560 0.316 0.132 0.202 0.806 0.599 0.393 0.674 0.613 0.630 0.017 0.093 0.127 0.407 0.786 0.120 0.827 0.057 0.043 0.133 5218 chr22 25957281 25973042 + 0 NA intron (NM_005160, intron 1 of 20) intron (NM_005160, intron 1 of 20) 4300 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 1.328 nan 1.134 0.294 1.417 0.747 0.438 0.449 0.185 0.186 0.087 0.327 1.062 0.440 0.095 0.747 0.969 0.329 0.504 0.916 0.813 0.919 0.292 0.774 0.754 3.386 4.088 1.040 1.289 1.952 1.802 1.284 2.266 1.852 1.791 0.955 1.687 1.812 1.346 0.109 0.390 0.423 0.271 0.438 0.327 0.327 0.329 1.790 0.306 7758 chr8 76318780 76334812 + 0 NA intron (NM_001330561, intron 1 of 11) L1ME1|LINE|L1 6891 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 2.191 0.828 1.025 0.253 2.255 1.150 0.449 0.954 0.100 0.879 0.517 0.253 0.727 0.490 0.101 0.739 0.499 3.067 3.986 1.241 1.101 0.782 0.279 1.998 1.860 1.250 1.494 1.251 1.939 0.802 0.659 2.119 3.080 4.694 3.526 0.372 0.502 1.571 1.391 0.021 0.338 0.975 0.045 0.449 0.253 0.012 0.602 2.080 0.093 6295 chr5 67663389 67681764 + 0 NA Intergenic Intergenic 84180 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 0.599 1.522 0.528 0.119 0.213 0.131 0.191 0.114 0.088 0.095 0.091 0.097 1.352 0.054 0.097 0.676 0.560 3.377 5.031 0.251 0.280 0.123 0.072 0.592 0.597 0.520 0.637 0.214 0.230 0.411 0.173 0.913 1.375 0.314 0.419 0.154 0.278 0.386 0.347 0.348 0.144 0.057 0.061 0.191 0.097 0.074 0.011 1.139 0.114 5164 chr21 45915653 45921062 + 0 NA 3' UTR (NM_144991, exon 12 of 12) 3' UTR (NM_144991, exon 12 of 12) -7570 NR_103707 54082 Hs.570444 NR_103707 ENSG00000235890 TSPEAR-AS1 C21orf31 TSPEAR antisense RNA 1 ncRNA nan 2.047 0.938 2.209 3.465 1.866 0.733 0.125 0.666 0.394 3.936 13.387 0.059 0.119 0.193 0.148 0.906 0.571 11.861 10.949 nan 0.650 0.194 0.241 0.127 nan 1.398 1.783 0.505 0.225 0.805 1.288 3.301 2.256 0.093 0.152 6.905 3.391 7.370 8.055 0.322 0.733 3.936 0.162 0.957 0.720 0.024 6045 chr4 153197524 153210779 + 0 NA Intergenic L1ME4a|LINE|L1 -54656 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 FBXW7-AS1 DEAR|DEspR FBXW7 antisense RNA 1 pseudo nan 2.376 0.533 1.114 0.753 0.232 0.301 0.118 0.037 0.498 0.224 1.830 0.774 0.033 0.095 1.141 1.651 7.119 5.214 0.958 0.917 1.166 0.582 1.427 1.626 0.119 0.180 1.236 1.528 0.253 0.185 0.437 1.024 0.145 0.103 0.179 0.215 0.969 0.623 0.050 0.053 0.015 0.098 0.301 1.830 0.092 0.366 0.028 6556 chr5 174142160 174179854 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity 9432 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 0.573 0.474 0.521 0.040 0.246 0.123 0.495 0.065 0.060 0.021 0.042 0.041 1.510 0.081 0.100 0.146 0.067 3.942 nan 0.671 0.707 0.060 0.037 0.046 0.040 0.165 nan 0.333 0.480 0.243 0.087 0.167 0.299 1.138 1.390 0.151 0.292 0.083 0.143 0.028 0.185 0.270 0.010 0.495 0.041 0.005 0.030 0.034 0.066 263 chr1 43145876 43158924 + 0 NA intron (NM_004559, intron 2 of 7) MIR|SINE|MIR 3742 NR_132737 4904 Hs.473583 NM_004559 ENSG00000065978 YBX1 BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 Y-box binding protein 1 protein-coding 19.720 1.530 nan 1.418 1.794 0.850 1.685 1.127 0.161 2.022 1.092 3.081 2.795 1.589 0.162 2.430 2.231 1.969 2.872 4.025 3.794 2.399 0.819 5.374 5.509 2.440 nan nan 4.010 4.961 5.479 3.657 nan 1.500 1.467 4.009 4.550 2.101 1.107 1.283 1.400 0.279 0.785 1.685 3.081 0.669 0.996 2.167 1.509 7688 chr8 59716345 59725236 + 0 NA exon (NM_014729, exon 8 of 9) exon (NM_014729, exon 8 of 9) -148386 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 2.073 nan 2.852 1.302 1.841 1.136 1.571 0.234 0.037 0.811 0.441 6.100 2.333 0.305 0.157 0.390 0.526 0.258 0.611 9.776 11.186 2.120 0.839 0.052 0.093 2.332 nan 2.211 2.176 1.178 0.843 0.099 0.178 2.569 3.530 0.191 0.263 4.593 1.713 1.967 1.758 0.694 1.793 1.571 6.100 0.099 1.120 0.023 0.029 635 chr1 164556568 164621968 + 0 NA intron (NM_001204963, intron 2 of 8) AluJb|SINE|Alu 60671 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 1.499 nan 1.892 0.871 1.422 0.637 3.409 1.262 0.259 0.385 0.261 1.484 1.579 0.043 0.107 0.930 1.229 2.167 6.311 1.321 nan 1.890 1.318 0.531 0.545 3.336 3.966 1.632 nan 0.392 0.237 1.485 2.041 1.328 1.114 0.431 0.808 0.989 0.800 0.902 1.946 0.336 1.818 3.409 1.484 0.129 0.121 1.248 0.237 3603 chr17 78489653 78527574 + 0 NA Intergenic AluSq|SINE|Alu -10012 NM_020761 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 1.713 1.320 1.590 0.639 0.607 0.322 0.521 0.235 0.171 0.305 0.243 0.615 1.005 0.326 0.144 0.987 0.849 0.632 0.874 1.051 1.078 1.744 0.675 0.866 0.940 nan 1.354 1.531 2.169 1.651 1.218 0.729 1.036 0.404 0.602 2.345 5.619 nan 0.688 0.122 0.434 0.075 0.688 0.521 0.615 0.363 0.735 0.094 2.992 310 chr1 54035730 54040224 + 0 NA intron (NM_147193, intron 3 of 9) MIRb|SINE|MIR 112905 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 1.276 1.003 1.920 0.272 0.336 0.178 1.590 0.376 0.071 0.081 0.130 0.134 2.817 0.049 0.134 0.831 1.360 10.801 12.692 1.208 1.124 0.781 0.341 0.879 0.774 3.659 3.678 1.812 2.187 1.446 1.229 1.115 2.109 0.381 0.177 0.374 nan 0.385 0.454 0.719 0.546 0.086 0.158 1.590 0.134 0.808 0.127 1.517 0.136 3764 chr18 42303982 42314218 + 0 NA intron (NM_001130110, intron 2 of 3) MIR|SINE|MIR 48237 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding nan 0.855 0.878 0.406 0.334 0.125 1.723 0.717 0.125 0.199 0.136 0.416 0.469 0.042 0.112 4.653 5.484 7.356 7.153 0.699 0.881 0.621 0.253 0.060 0.054 0.611 0.992 0.578 0.556 0.558 0.380 2.013 3.658 0.327 0.411 0.295 nan 1.909 1.575 0.202 0.080 0.112 0.605 1.723 0.416 0.218 0.218 2.512 0.232 7547 chr7 152619893 152635383 + 0 NA Intergenic L1MA4A|LINE|L1 170804 NR_073000 57180 Hs.647117 NM_020445 ENSG00000133627 ACTR3B ARP11|ARP3BETA ARP3 actin related protein 3 homolog B protein-coding 0.555 0.768 nan 0.697 4.555 2.297 1.106 0.074 0.146 0.242 0.248 1.501 1.994 0.099 0.123 1.066 1.379 0.476 0.458 1.382 1.341 0.320 0.101 0.084 0.064 0.118 0.200 0.072 0.104 0.438 0.474 1.484 1.677 1.632 2.313 0.161 0.179 0.794 0.661 0.205 0.319 0.461 0.097 1.106 1.501 0.012 0.026 1.022 0.047 6108 chr4 187571265 187583373 + 0 NA intron (NM_005245, intron 3 of 26) MER74A|LTR|ERVL 67668 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding nan 0.704 nan 0.635 0.172 0.067 0.717 0.069 0.092 0.246 0.172 3.429 0.720 0.077 0.067 0.524 0.705 1.922 2.341 0.464 0.467 0.061 0.024 0.231 0.163 0.102 0.104 0.948 1.018 0.315 0.153 0.157 0.196 0.554 0.671 0.056 0.104 0.151 0.210 0.030 0.008 0.190 0.717 3.429 0.033 1.197 0.039 0.011 5666 chr3 172553014 172589940 + 0 NA Intergenic Intergenic 103002 NM_001258315 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 0.963 1.404 0.748 0.182 0.620 0.318 0.551 0.162 0.096 0.128 0.168 0.296 0.261 0.041 0.078 0.352 0.247 0.750 1.103 0.497 0.455 6.757 1.738 0.218 0.239 0.594 0.805 0.320 0.285 0.695 0.254 0.136 0.190 0.506 0.651 0.282 0.542 0.947 0.800 0.160 0.082 0.088 0.055 0.551 0.296 0.190 0.049 0.035 0.178 565 chr1 154966174 154996160 + 0 NA intron (NR_049765, intron 2 of 3) intron (NR_049765, intron 2 of 3) 6061 NM_001252406 51043 Hs.729279 NM_001252406 ENSG00000160685 ZBTB7B CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX zinc finger and BTB domain containing 7B protein-coding nan nan 4.032 2.431 2.498 1.320 3.519 2.312 0.350 1.620 0.685 1.972 6.750 2.584 0.122 3.152 3.853 2.178 3.108 2.972 nan 2.563 0.816 3.477 3.702 1.919 2.606 4.204 4.894 2.409 1.989 3.468 5.397 1.968 1.947 2.363 4.751 1.312 0.704 1.603 3.410 0.610 1.587 3.519 1.972 1.143 2.472 2.856 1.667 4997 chr20 50137181 50160203 + 0 NA intron (NM_001258292, intron 1 of 9) MIR|SINE|MIR 10566 NM_001258297 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T-cells 2 protein-coding 0.823 1.184 0.544 0.139 1.532 0.778 0.251 0.254 0.105 2.937 1.466 2.622 1.902 0.192 0.092 0.638 nan 0.327 0.627 2.116 2.613 1.229 0.490 0.534 0.619 0.294 0.442 0.636 0.890 0.432 0.262 0.828 1.221 0.435 0.241 0.207 0.332 3.240 1.647 0.785 1.156 0.058 0.024 0.251 2.622 0.068 0.532 0.704 0.016 7986 chr8 143520312 143541624 + 0 NA Intergenic Intergenic -14409 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 1.064 0.619 nan 0.141 0.478 0.257 0.760 0.060 0.052 0.066 0.075 1.739 1.918 0.346 0.049 1.032 1.575 0.139 0.185 nan 3.019 nan 0.158 0.254 0.297 0.671 1.077 0.445 0.824 0.855 0.886 0.648 0.742 0.188 0.206 0.244 0.287 0.569 0.367 1.754 0.437 0.013 0.107 0.760 1.739 0.264 0.241 0.241 0.040 11 chr1 1180610 1210576 + 0 NA intron (NM_194457, intron 2 of 5) intron (NM_194457, intron 2 of 5) -13491 NM_001014980 388581 Hs.197613 NM_001014980 ENSG00000184163 FAM132A C1QDC2|C1QTNF12|CTRP12 family with sequence similarity 132 member A protein-coding 1.278 nan 1.743 1.614 0.700 0.379 0.403 0.460 0.193 0.382 0.280 0.408 1.551 0.659 0.117 0.868 1.143 0.876 1.468 2.400 2.515 0.948 0.292 3.065 2.992 0.935 nan nan 6.867 nan 0.767 0.761 1.148 0.299 0.424 0.839 1.107 0.713 0.513 0.436 0.749 0.067 0.783 0.403 0.408 0.313 0.403 0.235 0.297 7605 chr8 17645854 17667073 + 0 NA intron (NM_001001924, intron 1 of 14) L1ME4a|LINE|L1 1963 NM_001001925 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 0.904 1.063 nan 0.109 1.069 0.649 0.222 0.271 0.145 0.167 0.172 0.425 0.357 0.091 0.116 0.355 0.228 2.464 8.718 0.636 nan 1.124 0.259 1.041 1.143 0.097 0.235 0.350 0.413 0.359 0.200 0.113 0.198 0.405 0.483 0.381 0.727 0.995 0.866 0.056 0.033 0.105 0.303 0.222 0.425 0.009 1.158 0.014 0.342 5960 chr4 83291991 83297268 + 0 NA exon (NM_002138, exon 1 of 8) exon (NM_002138, exon 1 of 8) 520 NM_031369 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 6.791 3.588 4.291 4.955 9.529 4.407 6.050 3.603 0.183 3.313 1.385 6.281 11.344 3.748 0.160 8.414 7.261 11.645 15.807 11.066 10.083 11.230 5.371 20.196 21.236 4.662 nan 9.768 14.835 11.388 15.646 3.998 8.024 7.875 8.711 11.287 8.971 2.879 1.633 6.057 7.490 1.392 4.474 6.050 6.281 1.262 3.399 1.867 2.995 4606 chr2 175925320 175932628 + 0 NA Intergenic Intergenic -58867 NR_038133 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 0.826 0.848 0.912 0.278 0.273 0.044 0.052 0.114 0.023 0.042 0.102 0.065 0.388 0.030 0.117 0.251 0.272 0.307 0.362 0.246 0.244 0.473 0.093 0.326 0.264 0.419 0.551 12.466 14.098 0.295 0.197 0.162 0.218 0.628 1.364 0.372 0.686 0.396 0.325 0.067 0.099 0.078 0.022 0.052 0.065 0.026 0.083 0.027 0.202 5581 chr3 141048505 141066976 + 0 NA intron (NM_001080412, intron 1 of 7) L2a|LINE|L2 14685 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 1.204 nan nan 0.327 0.422 0.130 0.208 0.239 0.096 0.229 0.196 0.065 0.205 0.047 0.102 0.306 0.224 0.212 0.256 0.285 0.385 nan 2.133 0.279 0.297 0.308 nan 0.268 nan nan 0.322 0.175 0.216 0.059 0.092 0.362 0.828 0.727 0.648 0.033 0.094 0.026 0.086 0.208 0.065 0.037 0.078 0.027 0.187 273 chr1 43967562 44056349 + 0 NA intron (NM_001329138, intron 4 of 36) intron (NM_001329138, intron 4 of 36) 15424 NM_130440 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase, receptor type F protein-coding nan 1.335 nan 0.428 0.741 0.389 0.759 0.200 0.096 0.381 0.234 1.620 1.859 0.170 0.108 1.295 1.660 0.672 1.258 2.009 2.199 0.592 0.214 0.568 0.568 0.497 nan nan 7.605 1.933 1.812 1.285 nan 0.394 0.394 0.728 2.029 0.999 0.676 1.286 1.473 0.180 0.398 0.759 1.620 0.688 0.233 1.066 1.147 6914 chr6 114166714 114183272 + 0 NA Intergenic Intergenic -3521 NM_002356 4082 Hs.519909 NM_002356 ENSG00000277443 MARCKS 80K-L|MACS|PKCSL|PRKCSL myristoylated alanine rich protein kinase C substrate protein-coding nan 2.918 nan 4.772 5.797 3.057 4.354 2.634 0.183 1.350 0.644 2.414 10.355 1.774 0.099 5.696 7.446 4.919 6.790 11.216 nan nan 2.923 6.875 7.221 3.035 nan 2.215 3.494 7.762 9.009 2.862 5.931 3.382 2.508 6.582 nan 1.457 1.072 4.668 3.851 0.924 1.730 4.354 2.414 1.538 1.552 3.525 2.382 2912 chr15 66109958 66130744 + 0 NA Intergenic AluJb|SINE|Alu -35720 NM_001320835 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 1.175 1.490 nan 1.141 1.907 1.003 0.296 0.883 0.147 0.378 0.192 2.097 1.070 0.073 0.077 0.455 0.423 0.430 0.840 2.039 1.934 nan 2.750 0.185 0.216 0.316 0.617 2.963 3.823 1.849 1.336 0.485 0.562 1.021 1.820 0.437 0.935 1.728 0.835 0.176 0.146 0.279 0.244 0.296 2.097 0.079 3.742 0.271 0.143 6016 chr4 129730367 129735019 + 0 NA promoter-TSS (NM_001287443) promoter-TSS (NM_001287443) 268 NM_001287442 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 7.969 8.653 nan 10.295 7.587 3.873 4.530 4.811 0.757 2.764 1.091 8.332 12.358 5.960 0.135 3.640 3.899 6.244 9.762 9.967 6.278 5.332 2.249 9.041 9.157 3.728 4.596 6.838 12.488 9.737 14.038 1.222 4.351 6.211 4.536 9.258 7.640 2.119 1.358 5.536 5.042 1.476 7.470 4.530 8.332 0.942 3.203 1.911 3.560 6708 chr6 31780690 31786812 + 0 NA promoter-TSS (NM_005527) promoter-TSS (NM_005527) 460 NM_005345 3303 Hs.274402 NM_005345 ENSG00000204389 HSPA1A HEL-S-103|HSP70-1|HSP70-1A|HSP70.1|HSP70I|HSP72|HSPA1 heat shock protein family A (Hsp70) member 1A protein-coding nan 2.270 nan 3.298 4.289 1.990 7.204 2.712 0.893 0.742 0.847 3.808 11.897 4.588 0.190 3.540 4.405 0.560 nan nan 3.608 5.648 1.749 2.330 2.311 2.080 2.733 4.022 5.488 2.128 1.617 3.727 12.328 3.524 3.695 3.754 5.771 2.269 1.089 2.065 2.432 0.888 2.051 7.204 3.808 0.206 2.017 2.091 2.695 855 chr1 212869248 212874059 + 0 NA intron (NM_018664, intron 1 of 2) MIRb|SINE|MIR 1674 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 1.761 1.543 1.511 0.717 1.397 0.620 0.612 0.948 0.234 0.549 0.309 0.491 nan 0.603 0.083 0.355 0.410 9.795 5.039 1.504 1.235 nan 0.263 2.126 2.409 0.913 nan 0.662 1.050 1.232 0.757 0.272 0.253 0.452 0.432 1.414 2.158 0.658 0.543 0.279 0.284 0.060 0.182 0.612 0.491 0.323 0.064 0.057 0.560 2186 chr12 122515677 122530045 + 0 NA intron (NM_014938, intron 1 of 16) MIRc|SINE|MIR 6227 NM_014938 22877 Hs.437153 NM_014938 ENSG00000175727 MLXIP MIR|MONDOA|bHLHe36 MLX interacting protein protein-coding 1.933 1.665 1.236 1.151 1.655 0.884 0.752 0.430 0.131 0.735 0.490 1.505 2.204 0.799 0.152 1.530 2.022 0.952 1.387 1.982 1.885 nan 0.758 2.462 2.304 1.434 2.096 3.067 4.096 1.659 1.697 3.709 6.741 1.321 1.500 0.785 1.031 1.909 1.070 1.047 2.052 0.273 0.706 0.752 1.505 0.220 0.619 6.032 0.319 6650 chr6 20431824 20448819 + 0 NA intron (NM_001243076, intron 1 of 6) intron (NM_001243076, intron 1 of 6) 36411 NM_001243076 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 1.608 0.880 nan 0.386 0.454 0.245 0.264 0.343 0.156 0.378 0.222 0.400 nan 0.103 0.113 0.442 0.339 0.490 nan 0.486 0.714 nan 0.205 0.609 0.616 3.349 4.574 1.107 1.098 0.625 0.452 0.186 0.405 0.939 1.360 0.734 1.319 0.953 0.783 0.072 0.116 0.174 0.158 0.264 0.400 0.519 0.364 0.076 0.392 4292 chr2 38573120 38606282 + 0 NA intron (NM_001330462, intron 1 of 13) MER5A|DNA|hAT-Charlie 13971 NM_001330460 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 1.355 nan nan 0.501 0.592 0.242 0.488 0.573 0.194 0.433 0.298 0.566 1.331 0.507 0.136 0.983 1.125 1.285 2.525 1.110 1.041 1.150 0.445 7.545 nan 0.802 1.142 0.993 1.342 nan 1.012 0.637 1.226 0.404 0.288 1.241 1.807 0.741 0.504 0.233 0.472 0.093 0.243 0.488 0.566 0.094 0.255 0.285 0.388 1097 chr10 34916282 34929621 + 0 NA intron (NM_001184785, intron 2 of 24) intron (NM_001184785, intron 2 of 24) 181302 NM_001184791 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.742 0.858 0.900 0.086 2.170 1.125 0.362 0.967 0.243 0.498 0.185 0.799 0.412 0.164 0.087 1.088 0.740 2.623 nan 1.241 1.101 1.983 0.677 9.544 9.525 0.420 0.734 0.578 0.937 0.223 0.114 0.673 1.152 0.246 0.186 0.255 0.567 0.699 0.485 0.034 0.094 0.065 0.113 0.362 0.799 0.102 0.167 0.814 0.171 896 chr1 226248030 226256464 + 0 NA intron (NM_002107, intron 2 of 3) intron (NM_002107, intron 2 of 3) 1819 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 7.677 nan 8.158 8.028 7.683 4.142 4.634 3.343 0.344 4.667 1.718 6.809 10.016 4.808 0.193 8.765 8.226 11.614 15.019 13.221 nan 6.839 2.723 16.169 16.035 3.939 4.905 7.731 11.351 7.838 9.442 2.466 4.228 6.336 5.631 7.121 7.369 3.206 1.615 6.913 3.001 1.704 3.293 4.634 6.809 1.081 2.368 1.409 2.252 3609 chr17 79033410 79059353 + 0 NA intron (NM_017451, intron 3 of 14) intron (NM_017451, intron 3 of 14) 37434 NM_006340 10458 Hs.128316 NM_006340 ENSG00000175866 BAIAP2 BAP2|FLAF3|IRSP53 BAI1 associated protein 2 protein-coding 1.155 1.187 4.562 0.719 0.424 0.177 1.098 0.100 0.061 0.248 0.149 0.157 0.866 0.113 0.084 0.887 1.335 0.304 0.506 0.929 0.860 0.611 0.295 0.220 0.235 nan 0.638 0.345 0.777 2.475 2.160 0.385 0.485 0.560 0.599 1.284 2.987 nan 0.516 0.121 0.640 0.179 0.170 1.098 0.157 0.226 0.089 0.063 1.077 4924 chr20 32042275 32088954 + 0 NA Intergenic Intergenic -12314 NM_001032999 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 translocation partner 2 protein-coding 1.624 2.712 2.901 2.708 3.346 1.693 0.453 0.368 0.240 0.877 0.530 4.902 3.463 0.296 0.122 2.377 3.885 0.620 0.876 2.518 nan 4.816 1.650 1.660 1.706 1.351 2.039 3.601 3.562 2.495 1.987 1.165 1.459 1.520 2.158 1.203 nan 1.294 0.718 0.960 1.262 0.519 1.251 0.453 4.902 0.377 0.501 0.691 0.663 6481 chr5 142429394 142447959 + 0 NA intron (NM_015071, intron 17 of 22) intron (NM_015071, intron 17 of 22) -133389 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA nan 0.964 0.743 0.342 0.892 0.415 0.299 1.253 0.208 0.153 0.159 0.667 3.115 0.058 0.110 0.228 0.211 0.327 0.830 0.452 0.553 0.342 0.162 0.454 0.429 1.213 1.570 2.931 1.891 0.511 0.409 0.280 0.588 0.568 0.432 0.248 0.980 1.015 0.696 0.277 3.046 0.123 0.166 0.299 0.667 0.287 0.552 0.522 0.238 1478 chr11 66484870 66497133 + 0 NA Intergenic Intergenic -2131 NM_006946 6712 Hs.26915 NM_006946 ENSG00000173898 SPTBN2 GTRAP41|SCA5|SCAR14 spectrin beta, non-erythrocytic 2 protein-coding nan 2.406 2.533 2.114 2.240 1.176 2.161 0.251 0.117 1.637 0.756 6.083 2.666 0.618 0.081 2.120 2.769 0.999 1.662 8.526 8.910 3.703 1.136 2.257 2.185 0.883 1.769 5.623 7.043 2.146 2.571 1.175 2.222 2.218 1.932 1.306 1.441 2.056 1.247 1.446 2.531 0.537 4.352 2.161 6.083 0.476 1.290 0.764 0.332 439 chr1 109355817 109360161 + 0 NA TTS (NM_152763) TTS (NM_152763) 41737 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 5.331 4.525 3.060 1.753 0.445 0.404 2.569 6.317 0.467 0.322 0.147 3.632 0.648 0.125 0.073 0.752 1.022 0.450 0.998 1.333 nan 9.800 9.842 0.324 0.368 6.109 6.635 nan nan 2.719 2.412 0.272 0.620 7.193 6.850 1.488 3.303 1.417 0.862 1.637 2.207 0.792 0.385 2.569 3.632 0.771 1.054 0.361 0.412 7623 chr8 27471429 27511161 + 0 NA promoter-TSS (NM_016240) promoter-TSS (NM_016240) -282 NM_182826 51435 Hs.128856 NM_016240 ENSG00000168077 SCARA3 APC7|CSR|CSR1|MSLR1|MSRL1 scavenger receptor class A member 3 protein-coding nan 0.977 nan 0.112 0.194 0.089 0.522 0.087 0.077 0.039 0.090 0.069 0.217 0.415 0.103 0.396 0.402 0.223 0.341 nan 0.527 nan 0.397 0.172 0.195 0.289 0.477 0.224 0.261 1.155 0.686 0.231 0.279 0.200 0.521 1.321 3.925 nan nan 0.035 0.059 0.032 0.024 0.522 0.069 0.073 0.125 0.039 2.771 3373 chr17 35833262 35852770 + 0 NA Intergenic Intergenic -6935 NM_007026 11072 Hs.91448 NM_007026 ENSG00000276023 DUSP14 MKP-L|MKP6 dual specificity phosphatase 14 protein-coding nan 1.787 1.148 0.328 1.371 0.693 1.024 1.473 0.205 0.763 0.407 0.884 1.583 0.509 0.081 1.973 2.506 1.409 3.515 nan 1.279 2.024 0.701 1.517 1.486 1.275 1.719 1.334 2.412 nan 3.657 0.803 1.751 1.072 0.980 1.215 2.687 0.944 0.694 0.570 1.467 0.348 1.174 1.024 0.884 0.360 0.676 1.051 0.531 6453 chr5 133838598 133881385 + 0 NA promoter-TSS (NM_001308143) promoter-TSS (NM_001308143) -75 NM_001308143 23338 Hs.732155 NM_015288 ENSG00000043143 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 1.620 1.211 nan 0.571 1.355 0.686 0.350 1.035 0.208 0.252 0.151 0.543 3.275 1.809 0.133 0.447 0.820 0.972 1.494 1.086 1.009 1.575 0.405 0.672 0.764 0.807 1.210 4.389 4.068 1.991 2.124 0.878 1.197 0.752 0.678 1.139 3.243 0.936 0.547 0.810 2.141 0.132 0.222 0.350 0.543 0.261 0.897 0.756 1.287 8383 chrX 44731075 44734809 + 0 NA exon (NM_021140, exon 1 of 29) exon (NM_021140, exon 1 of 29) 521 NM_021140 7403 Hs.522616 NM_021140 ENSG00000147050 KDM6A KABUK2|UTX|bA386N14.2 lysine demethylase 6A protein-coding 7.119 7.047 nan 5.839 4.062 1.839 3.164 3.970 0.299 4.396 1.852 4.228 11.793 3.098 0.046 2.123 2.443 11.608 15.884 9.802 8.691 7.053 3.885 25.446 25.391 4.392 5.551 6.315 12.144 12.911 12.938 2.895 7.916 5.868 5.228 9.431 6.790 2.504 1.412 2.488 4.178 1.454 5.122 3.164 4.228 1.248 2.218 1.401 2.418 7179 chr7 15714413 15732830 + 0 NA intron (NM_005924, intron 1 of 2) intron (NM_005924, intron 1 of 2) 2687 NM_005924 4223 Hs.170355 NM_005924 ENSG00000106511 MEOX2 GAX|MOX2 mesenchyme homeobox 2 protein-coding nan 0.996 nan 0.235 0.255 0.122 3.766 0.214 0.088 1.229 0.734 0.176 0.393 0.082 0.182 nan 0.229 0.140 0.203 0.468 0.519 0.229 0.147 0.626 0.659 0.535 0.732 0.444 0.491 8.172 9.317 0.085 0.131 0.104 0.101 0.141 0.413 3.843 2.159 0.033 0.039 0.021 0.061 3.766 0.176 0.027 0.076 0.043 0.047 8061 chr9 14236695 14264430 + 0 NA intron (NM_001190737, intron 2 of 10) intron (NM_001190737, intron 2 of 10) 63483 NM_005596 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 1.079 0.267 0.448 0.197 0.223 0.966 0.133 0.186 0.268 0.275 0.872 0.144 0.127 0.212 0.165 2.125 5.907 0.467 0.600 0.625 0.277 0.224 0.245 6.091 9.234 0.805 0.916 0.376 0.192 0.354 0.425 0.262 0.397 0.355 0.834 1.167 0.954 0.289 0.089 0.031 0.080 0.223 0.275 0.021 0.059 0.096 0.097 8421 chrX 153188456 153200560 + 0 NA TTS (NM_003491) TTS (NM_003491) -2794 NM_001666 393 Hs.701324 NM_001666 ENSG00000089820 ARHGAP4 C1|RGC1|RhoGAP4|SrGAP4|p115 Rho GTPase activating protein 4 protein-coding 2.530 2.783 2.500 1.726 5.765 2.965 3.284 0.554 0.132 0.908 0.583 2.857 5.816 1.560 0.050 4.494 6.984 2.609 2.909 5.026 4.607 3.756 1.313 3.944 4.166 1.174 1.667 4.473 4.487 3.145 3.500 1.817 4.135 1.593 1.840 1.608 2.927 1.467 0.679 2.639 3.761 0.534 1.905 3.284 2.857 0.695 1.807 2.830 0.905 5235 chr22 29490612 29507011 + 0 NA intron (NM_032045, intron 3 of 9) intron (NM_032045, intron 3 of 9) 29745 NM_001039570 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding nan 0.611 0.798 0.209 0.282 0.136 0.461 0.190 0.099 0.038 0.079 0.415 0.256 0.066 0.070 0.554 0.434 6.898 nan 0.427 0.468 0.381 0.140 0.411 0.385 1.870 nan 0.927 0.808 1.400 0.802 0.145 0.349 0.810 0.881 0.714 nan 1.113 0.892 0.054 0.129 0.336 0.073 0.461 0.415 0.793 0.056 0.061 0.602 5181 chr22 18631223 18652159 + 0 NA intron (NM_017414, intron 2 of 10) intron (NM_017414, intron 2 of 10) 8933 NM_017414 11274 Hs.38260 NM_017414 ENSG00000184979 USP18 ISG43|UBP43 ubiquitin specific peptidase 18 protein-coding 0.931 nan 1.296 1.546 1.049 0.671 0.780 0.722 0.223 0.835 0.559 1.475 3.005 0.337 0.072 1.915 2.155 0.992 1.244 1.814 1.638 3.101 0.997 2.071 2.170 0.209 0.330 2.946 3.615 1.032 1.208 0.889 1.189 2.285 2.906 0.122 0.208 4.467 2.362 0.671 1.348 0.752 0.256 0.780 1.475 0.450 0.980 0.747 0.076 6602 chr6 7121221 7157040 + 0 NA intron (NM_001003700, intron 1 of 11) intron (NM_001003700, intron 1 of 11) 31044 NM_001003699 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 1.532 2.118 2.623 2.061 1.553 0.756 0.455 0.265 0.153 1.045 0.569 4.114 2.254 0.482 0.142 3.276 4.354 1.640 2.268 2.191 2.549 1.814 0.623 1.695 1.835 0.867 1.206 4.498 5.034 0.774 0.538 1.533 2.443 2.689 2.977 1.335 2.341 2.795 1.506 1.665 2.185 0.719 0.972 0.455 4.114 0.282 1.291 1.878 0.430 4016 chr19 31173034 31188485 + 0 NA Intergenic Intergenic 317459 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 1.962 0.947 1.627 0.098 0.326 0.177 1.168 0.122 0.074 0.051 0.059 0.387 0.517 0.069 0.088 0.651 0.837 0.367 0.446 0.176 0.257 0.216 0.082 0.080 0.090 0.405 0.810 0.121 0.153 nan 0.151 0.342 0.403 0.046 0.128 2.689 6.745 0.439 0.553 0.286 0.075 0.012 0.115 1.168 0.387 0.529 0.052 0.083 2.643 1830 chr12 11857470 11887274 + 0 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 69584 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 0.792 1.060 1.729 2.131 0.936 0.454 0.314 0.164 0.017 0.416 0.285 0.974 3.807 0.080 0.127 0.340 0.312 0.525 1.083 nan 0.975 1.614 0.697 0.626 0.738 0.385 0.682 4.865 5.344 0.460 0.246 0.839 1.549 0.089 0.110 0.263 0.467 0.809 0.608 2.433 1.471 0.032 0.032 0.314 0.974 0.036 0.075 1.249 0.112 3917 chr18 77000316 77023871 + 0 NA intron (NM_198531, intron 11 of 29) MIRb|SINE|MIR -143679 NM_001278669 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T-cells 1 protein-coding nan nan 0.632 0.415 0.376 0.215 0.376 0.108 0.034 0.387 0.203 0.498 0.594 0.126 0.075 0.403 0.276 0.460 0.914 0.674 nan 10.800 4.757 0.840 0.882 0.192 0.336 0.707 nan 0.351 0.200 0.151 0.259 0.821 1.648 0.204 0.275 1.280 0.680 0.053 0.114 0.142 0.067 0.376 0.498 0.054 0.182 0.027 0.068 3060 chr16 14650206 14667156 + 0 NA intron (NM_002582, intron 18 of 23) intron (NM_002582, intron 18 of 23) 65447 NM_001242992 5073 Hs.253197 NM_002582 ENSG00000140694 PARN DAN|DKCB6|PFBMFT4 poly(A)-specific ribonuclease protein-coding 0.954 1.333 nan 2.649 0.432 0.265 0.394 0.298 0.123 0.407 0.325 0.268 0.451 0.115 0.083 0.927 1.311 0.385 0.441 0.350 0.370 6.754 2.410 0.682 0.610 0.483 0.719 1.522 1.608 nan 0.216 1.397 2.417 0.326 0.738 0.292 0.799 1.277 0.717 0.391 0.215 0.050 0.211 0.394 0.268 0.252 0.084 4.187 0.189 2620 chr14 58665593 58668837 + 0 NA intron (NM_018477, intron 1 of 12) intron (NM_018477, intron 1 of 12) 382 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin-related protein 10 homolog protein-coding 7.124 nan 5.220 5.530 3.246 1.786 3.558 3.238 0.266 1.510 0.769 3.600 7.395 3.436 0.222 3.498 3.976 5.274 6.649 7.396 7.392 4.469 2.782 17.644 18.461 3.745 4.160 5.495 9.810 6.780 5.878 3.493 4.959 3.372 4.518 15.530 16.337 nan 1.681 2.864 3.538 0.379 1.642 3.558 3.600 0.716 2.468 0.918 7.906 4022 chr19 33863148 33868148 + 0 NA intron (NM_001252296, intron 1 of 1) intron (NM_001252296, intron 1 of 1) 218 NM_001252296 1054 Hs.429666 NM_001806 ENSG00000153879 CEBPG GPE1BP|IG/EBP-1 CCAAT/enhancer binding protein gamma protein-coding 5.142 4.276 4.831 7.910 4.012 2.336 2.220 3.133 0.290 1.909 0.795 4.354 15.243 4.493 0.209 3.906 5.192 4.438 6.479 5.415 4.688 7.882 4.775 11.742 12.136 2.973 4.327 5.626 7.784 nan 6.516 12.215 15.038 5.360 7.386 3.681 4.079 3.223 1.626 4.329 5.172 0.823 2.093 2.220 4.354 0.911 2.193 2.763 1.035 3043 chr16 6994218 7046070 + 0 NA intron (NM_001142334, intron 1 of 13) AluJo|SINE|Alu 196334 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 0.923 nan 0.666 0.051 0.186 0.090 0.083 0.056 0.093 0.051 0.106 0.035 0.216 0.032 0.073 0.271 0.171 0.041 0.041 0.105 0.150 nan 0.103 0.089 0.113 0.119 nan 0.086 0.119 0.236 0.079 0.093 0.127 0.077 0.079 1.162 4.303 0.515 0.462 0.110 0.073 0.022 0.496 0.083 0.035 0.113 0.029 0.023 1.321 1230 chr10 121409881 121430076 + 0 NA intron (NM_004281, intron 1 of 3) intron (NM_004281, intron 1 of 3) 9096 NM_004281 9531 Hs.523309 NM_004281 ENSG00000151929 BAG3 BAG-3|BIS|CAIR-1|MFM6 BCL2 associated athanogene 3 protein-coding nan 1.462 2.526 0.724 0.719 0.325 0.457 1.343 0.159 0.341 0.199 0.125 1.300 0.834 0.054 0.611 0.764 1.194 1.713 0.316 0.314 3.349 0.989 1.085 1.052 1.197 1.621 2.901 5.484 0.864 0.761 0.396 0.746 0.747 1.047 1.165 2.120 0.678 0.540 1.326 0.324 0.175 0.198 0.457 0.125 0.421 1.221 0.142 0.229 5865 chr4 38663649 38677295 + 0 NA intron (NM_016531, intron 1 of 5) intron (NM_016531, intron 1 of 5) -4223 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 2.927 3.277 3.401 5.332 8.033 4.819 2.224 1.919 0.189 2.710 1.224 4.429 6.743 3.657 0.119 3.429 5.018 1.956 3.731 3.860 3.255 2.879 1.546 3.749 3.539 2.959 4.014 7.490 6.091 2.256 3.336 1.569 3.413 2.318 2.450 0.231 0.246 3.004 1.728 1.127 4.045 0.747 0.900 2.224 4.429 0.486 1.384 1.187 0.200 7446 chr7 115300995 115325259 + 0 NA Intergenic Intergenic 295240 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding nan 0.705 0.997 0.127 0.257 0.145 0.642 0.279 0.139 0.284 0.349 0.246 0.268 0.077 0.174 0.405 0.294 0.300 0.706 0.195 0.240 0.129 0.101 0.251 0.246 0.402 0.555 0.426 0.395 0.542 0.223 0.225 0.338 11.894 14.013 0.327 0.857 0.653 0.675 0.060 0.423 3.465 0.047 0.642 0.246 0.032 0.397 0.069 0.102 3590 chr17 77454574 77464547 + 0 NA intron (NM_001082575, intron 2 of 14) (CCA)n|Simple_repeat|Simple_repeat 52670 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding protein, fox-1 homolog 3 protein-coding 1.046 0.552 0.861 0.089 0.292 0.104 0.375 0.074 0.106 0.047 0.098 0.036 0.400 0.044 0.074 0.315 0.209 0.069 0.057 3.480 3.608 0.109 0.056 0.092 0.131 nan 1.661 0.102 0.136 6.829 10.348 0.101 0.167 0.063 0.096 0.294 0.476 nan 0.228 0.154 0.079 0.010 0.048 0.375 0.036 0.931 0.041 0.867 2104 chr12 103341697 103366172 + 0 NA 3' UTR (NM_004316, exon 2 of 2) 3' UTR (NM_004316, exon 2 of 2) 2482 NM_004316 429 Hs.703025 NM_004316 ENSG00000139352 ASCL1 ASH1|HASH1|MASH1|bHLHa46 achaete-scute family bHLH transcription factor 1 protein-coding 1.546 3.783 nan 8.288 9.521 5.148 1.919 0.134 0.119 5.975 3.019 7.511 14.604 0.040 0.086 0.183 0.108 0.141 0.181 17.159 14.254 7.101 2.826 0.115 0.133 0.153 0.260 12.639 11.184 0.652 0.449 0.081 0.085 5.191 2.553 0.474 1.101 5.433 2.844 11.692 11.270 0.669 0.178 1.919 7.511 0.091 3.827 0.014 0.091 802 chr1 204025628 204079942 + 0 NA intron (NM_005686, intron 1 of 13) intron (NM_005686, intron 1 of 13) 10539 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY-box 13 protein-coding 1.419 2.229 1.415 2.616 3.325 1.755 1.435 0.665 0.237 0.717 0.338 2.867 2.952 0.183 0.105 2.955 4.103 4.546 4.226 2.668 2.800 2.977 0.806 nan nan 0.289 0.565 2.829 2.863 0.506 0.367 1.344 2.363 0.976 0.722 0.401 0.828 1.511 0.809 0.936 2.302 0.120 0.423 1.435 2.867 0.134 0.144 1.391 0.102 2632 chr14 60617800 60633173 + 0 NA intron (NM_001322280, intron 1 of 6) L3|LINE|CR1 6725 NM_001322282 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding nan nan 2.200 2.339 1.583 0.922 2.089 0.818 0.105 0.531 0.451 1.222 3.057 0.409 0.131 1.235 1.672 0.867 1.451 2.658 2.488 2.353 0.877 nan 3.168 1.268 1.874 3.692 nan 3.951 3.057 1.111 2.025 3.540 4.304 1.054 2.369 1.698 0.978 0.582 1.958 0.905 3.105 2.089 1.222 0.528 0.592 0.781 0.972 6361 chr5 90957633 90967532 + 0 NA Intergenic LTR33|LTR|ERVL -283392 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding nan 1.631 0.643 0.141 0.573 0.301 0.440 0.082 0.114 0.080 0.097 0.298 0.088 0.123 0.318 0.159 8.378 0.857 0.950 0.887 0.409 0.140 0.446 0.480 0.330 0.440 0.628 0.509 0.502 0.233 0.088 0.121 0.724 0.564 0.465 nan 0.399 0.359 0.099 0.961 0.087 0.024 0.440 0.039 0.238 0.030 0.187 560 chr1 154578976 154581903 + 0 NA intron (NM_001025107, intron 1 of 14) CpG 285 NM_015840 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA specific protein-coding nan 6.014 6.226 4.369 6.030 2.856 6.049 9.600 1.558 5.249 2.834 6.048 19.986 8.649 0.407 4.371 4.844 10.496 16.525 13.667 12.566 8.876 3.087 5.334 5.814 2.986 5.075 10.129 16.912 7.383 7.102 13.107 15.570 6.957 7.722 0.783 0.959 4.249 2.194 5.450 12.924 1.011 3.032 6.049 6.048 0.823 3.649 7.247 0.168 2969 chr15 80675098 80712749 + 0 NA Intergenic Intergenic -2769 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 0.908 nan 0.677 0.227 0.584 0.414 0.349 0.107 0.086 0.267 0.209 0.699 0.999 0.324 0.085 3.323 3.200 6.220 4.477 0.955 0.916 1.023 0.440 6.534 6.793 0.650 1.010 0.793 1.447 1.136 0.969 0.875 1.262 0.152 0.140 0.216 0.223 0.552 0.398 0.177 0.190 0.023 0.198 0.349 0.699 0.134 0.313 0.420 0.102 4909 chr20 30269457 30314145 + 0 NA intron (NR_134257, intron 1 of 2) AluSx|SINE|Alu -17509 NR_131907 103021294 NR_131907 ENSG00000281376 ABALON INXS apoptotic BCL2L1-antisense long non-coding RNA ncRNA 1.997 4.252 1.785 3.876 2.963 1.598 29.204 1.820 0.326 1.814 0.978 3.565 6.998 1.096 0.117 1.992 2.738 1.536 3.872 3.909 nan 6.062 2.350 3.987 4.297 2.120 2.767 5.553 6.658 2.998 2.465 1.291 2.207 2.632 3.157 1.324 nan 1.557 0.806 5.575 3.473 1.242 2.003 29.204 3.565 1.354 1.007 1.726 1.284 4384 chr2 64255108 64264572 + 0 NA Intergenic MLT1K|LTR|ERVL-MaLR -13626 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54, GARP complex subunit protein-coding 0.833 1.208 nan 0.257 0.863 0.455 1.624 0.253 0.035 0.148 0.226 0.288 1.104 0.057 0.163 0.385 0.213 0.180 0.292 0.857 1.128 nan 0.786 0.368 0.425 0.347 0.363 1.915 1.962 0.423 0.168 0.203 0.429 1.320 2.404 0.434 1.683 4.219 2.057 0.327 2.648 0.262 0.394 1.624 0.288 0.031 0.119 0.356 0.187 3065 chr16 15733206 15740218 + 0 NA promoter-TSS (NM_001143979) promoter-TSS (NM_001143979) 311 NM_014647 9665 Hs.173524 NM_014647 ENSG00000166783 KIAA0430 LKAP|MARF1|PPP1R34 KIAA0430 protein-coding 2.671 3.138 nan 5.571 4.122 2.050 2.390 2.672 0.233 1.902 0.962 3.305 11.219 4.287 0.223 3.017 2.781 2.006 2.822 4.175 3.794 8.204 3.720 6.355 7.204 2.766 3.715 10.257 15.666 nan 4.762 2.217 3.209 4.636 6.895 2.392 3.757 3.130 1.232 2.128 1.752 1.263 1.516 2.390 3.305 1.222 1.129 1.926 1.389 4580 chr2 166317030 166333739 + 0 NA promoter-TSS (NM_001172173) promoter-TSS (NM_001172173) -773 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 1.694 1.070 nan 0.359 0.563 0.347 2.029 0.377 0.116 0.612 0.553 0.303 0.402 0.059 0.093 2.019 1.471 2.256 1.500 1.102 1.346 3.231 1.138 0.387 0.412 4.437 5.035 0.646 0.748 6.889 6.743 0.309 0.475 0.010 0.009 4.017 6.769 0.788 0.522 0.030 0.208 0.006 0.281 2.029 0.303 0.296 0.364 0.139 1.786 8410 chrX 128263142 128281309 + 0 NA Intergenic AluSz|SINE|Alu 385257 NM_001282874 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 1.040 nan 1.240 0.179 3.344 1.728 0.211 0.035 0.026 0.707 0.487 0.217 0.174 0.018 0.037 0.184 0.133 0.273 0.312 0.129 0.210 0.765 0.259 0.109 0.122 0.191 0.338 0.299 0.514 0.560 0.344 0.065 0.103 1.819 1.667 0.653 1.633 1.146 0.637 0.003 0.040 0.728 0.562 0.211 0.217 0.054 0.156 0.005 1.056 6012 chr4 122014780 122024412 + 0 NA Intergenic Intergenic -25923 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 0.562 0.755 nan 0.166 0.224 0.166 0.173 0.093 0.035 0.065 0.111 0.136 0.173 0.044 0.049 0.420 0.184 6.947 1.332 0.320 0.378 0.121 0.051 0.352 0.390 0.211 0.369 0.396 0.376 0.350 0.188 0.183 0.193 0.031 0.031 0.239 0.775 0.440 0.357 0.012 0.046 0.024 0.041 0.173 0.136 0.056 0.040 0.140 7887 chr8 116112908 116128662 + 0 NA Intergenic Intergenic 559454 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding nan nan 1.247 0.213 0.275 0.082 0.073 0.170 0.103 0.088 0.119 0.714 0.433 0.055 0.094 0.419 0.522 0.264 0.384 0.639 0.791 nan 0.064 0.660 nan 1.951 nan 0.921 1.102 6.183 5.976 0.211 0.503 1.480 1.123 0.244 0.449 0.789 0.726 0.018 0.085 0.525 0.142 0.073 0.714 0.019 0.277 0.457 0.079 4875 chr20 20338373 20397011 + 0 NA Intergenic Intergenic 18927 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 3.247 1.939 nan 3.539 3.671 1.867 2.224 0.107 0.080 1.874 0.924 4.851 6.220 0.046 0.072 1.705 2.151 0.314 0.383 6.638 5.414 6.226 2.422 0.586 0.589 2.975 4.196 5.819 6.617 5.821 7.590 1.212 2.276 6.224 5.686 0.659 1.029 2.025 1.163 1.893 4.018 1.545 1.177 2.224 4.851 1.454 2.390 1.131 0.661 4438 chr2 97532197 97537375 + 0 NA intron (NM_017789, intron 1 of 14) CpG 949 NM_017789 54910 Hs.516220 NM_017789 ENSG00000168758 SEMA4C M-SEMA-F|SEMACL1|SEMAF|SEMAI semaphorin 4C protein-coding 7.115 3.163 6.344 3.997 5.710 3.284 6.706 1.042 0.123 5.130 2.041 8.649 14.990 4.822 0.117 8.171 9.891 5.431 7.603 11.978 9.230 6.582 2.110 10.002 9.641 2.333 3.861 9.943 12.994 3.920 4.109 3.029 6.204 3.023 1.974 4.445 4.070 1.849 1.005 8.030 7.701 0.847 2.513 6.706 8.649 2.539 4.818 2.274 2.429 2118 chr12 104668655 104709949 + 0 NA intron (NM_001261446, intron 2 of 13) intron (NM_001261446, intron 2 of 13) -8208 NM_001008394 493861 Hs.659857 NM_001008394 ENSG00000255150 EID3 NS4EB|NSE4B|NSMCE4B EP300 interacting inhibitor of differentiation 3 protein-coding 1.565 1.988 nan 1.640 1.164 0.525 0.628 1.182 0.351 0.650 0.498 0.966 2.420 4.174 0.233 1.215 1.453 1.577 2.902 1.709 1.613 2.529 0.753 3.536 3.928 1.868 2.247 1.686 2.679 1.755 1.933 0.934 1.354 2.398 3.574 1.235 1.499 1.798 1.055 0.752 1.333 0.471 0.598 0.628 0.966 0.313 0.661 0.736 0.392 3987 chr19 17344286 17366849 + 0 NA intron (NM_005234, intron 1 of 3) CpG 584 NM_005234 2063 Hs.466148 NM_005234 ENSG00000160113 NR2F6 EAR-2|EAR2|ERBAL2 nuclear receptor subfamily 2 group F member 6 protein-coding 2.364 1.675 2.923 1.677 0.999 0.482 0.888 0.685 0.264 0.749 0.410 1.560 1.435 1.683 0.092 1.044 1.989 0.923 1.484 2.211 1.997 2.986 0.752 1.988 1.788 0.867 1.387 4.550 5.483 1.390 1.137 0.612 1.044 1.190 0.911 4.220 11.897 1.765 1.096 1.434 0.797 0.282 0.443 0.888 1.560 0.313 1.080 0.499 3.711 7843 chr8 102497287 102527982 + 0 NA intron (NM_001330593, intron 1 of 15) intron (NM_001330593, intron 1 of 15) 7966 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 1.484 nan nan 2.120 0.792 0.390 0.262 0.349 0.089 0.404 0.250 3.290 5.443 0.025 0.074 2.156 2.485 3.518 5.704 2.826 2.448 nan 0.728 5.605 5.976 1.031 nan 7.897 nan nan 0.216 2.439 3.895 0.467 0.568 0.327 nan 1.186 0.806 2.120 0.145 0.075 0.761 0.262 3.290 0.038 0.515 1.278 0.225 6500 chr5 147237864 147249458 + 0 NA Intergenic LTR75|LTR|ERVL -14613 NM_054023 117156 Hs.483765 NM_054023 ENSG00000164265 SCGB3A2 LU103|PNSP1|UGRP1|pnSP-1 secretoglobin family 3A member 2 protein-coding nan 0.722 0.800 0.228 0.216 0.152 0.177 0.097 0.055 0.055 0.050 0.209 0.634 0.028 0.099 0.253 0.148 0.706 0.822 0.256 0.372 0.355 0.150 0.163 0.169 0.175 0.379 0.424 0.337 0.324 0.177 0.185 0.258 4.072 4.811 0.279 0.599 0.523 0.388 0.063 0.114 1.236 0.089 0.177 0.209 0.075 0.071 0.077 0.022 6300 chr5 69195370 69201131 + 0 NA Intergenic Intergenic -122822 NM_021967 8293 Hs.726820 NM_021967 ENSG00000172058 SERF1A 4F5|FAM2A|H4F5|SERF1|SMAM1 small EDRK-rich factor 1A protein-coding 3.624 8.398 2.891 0.979 0.518 0.306 0.617 0.310 0.306 0.807 0.386 0.410 0.430 0.130 0.103 0.526 0.784 1.011 1.298 0.949 0.813 4.379 1.474 0.985 0.818 1.290 2.109 1.075 2.108 1.842 1.559 0.291 0.469 4.354 4.412 0.704 1.024 1.530 1.047 0.385 0.453 2.111 0.454 0.617 0.410 0.323 0.195 0.066 0.277 1844 chr12 13876980 13884371 + 0 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 252347 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 0.598 0.735 1.730 0.189 0.739 0.411 2.155 0.082 0.022 0.785 0.333 0.955 2.227 0.103 0.156 0.317 0.269 6.998 2.164 nan 2.344 3.233 1.010 0.769 0.757 0.968 1.207 0.226 0.210 0.392 0.243 0.205 0.223 1.472 1.642 0.323 0.634 1.644 0.808 0.510 0.140 0.373 0.011 2.155 0.955 0.067 0.058 5765 chr3 189428521 189443463 + 0 NA intron (NM_001114978, intron 1 of 12) intron (NM_001114978, intron 1 of 12) -71457 NM_001114980 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 1.496 1.338 1.039 0.306 0.816 0.283 0.172 3.390 0.231 0.247 0.214 0.132 1.117 0.036 0.085 0.387 0.176 0.309 0.941 0.386 0.475 6.978 2.097 0.342 0.343 0.244 0.355 1.006 1.727 0.795 0.485 0.115 0.181 1.140 1.248 1.174 3.217 1.422 0.650 0.056 0.092 0.223 0.101 0.172 0.132 0.072 0.115 0.020 0.912 7965 chr8 141516439 141523813 + 0 NA Intergenic Intergenic -1271 NM_017444 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex 1 protein-coding 7.001 2.987 nan 7.195 7.616 4.647 4.039 2.650 0.479 1.144 0.571 7.086 16.759 2.606 0.162 3.545 4.132 4.941 7.355 nan 11.062 nan 3.933 11.576 11.988 3.770 4.411 5.238 8.374 4.715 5.055 4.096 5.485 5.395 6.436 4.972 3.938 3.759 1.994 7.907 4.969 1.251 1.990 4.039 7.086 0.873 3.623 1.465 1.622 3296 chr17 16881037 16887943 + 0 NA Intergenic L2a|LINE|L2 -9088 NM_012452 23495 Hs.158341 NM_012452 ENSG00000240505 TNFRSF13B CD267|CVID|CVID2|IGAD2|RYZN|TACI|TNFRSF14B TNF receptor superfamily member 13B protein-coding 0.820 0.656 2.203 0.241 0.230 0.116 0.287 0.022 0.047 0.070 0.123 0.069 0.392 0.047 0.036 0.493 0.456 0.197 nan 1.673 1.199 4.586 0.813 0.135 0.144 0.149 0.301 0.515 0.570 nan 1.319 0.149 0.192 0.959 1.122 0.377 0.606 0.471 0.311 0.024 0.077 0.125 0.287 0.069 0.506 6.466 0.043 0.108 2681 chr14 76420889 76449245 + 0 NA intron (NM_001329939, intron 4 of 7) intron (NM_001329939, intron 4 of 7) 13298 NM_003239 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 2.633 0.734 2.246 0.272 0.416 0.244 0.469 1.149 0.197 0.116 0.122 0.364 0.537 0.177 0.108 0.342 0.406 0.507 0.925 0.647 0.726 0.543 0.182 1.025 1.078 1.346 2.216 0.684 nan 4.497 3.696 0.346 0.442 0.425 0.406 0.492 1.099 1.311 nan 0.087 0.273 0.101 1.033 0.469 0.364 1.350 0.190 0.059 0.292 8013 chr9 2156104 2162767 + 0 NA intron (NM_001289400, intron 1 of 7) intron (NM_001289400, intron 1 of 7) 979 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 0.730 1.767 0.826 0.145 1.890 1.028 0.306 1.528 0.196 4.300 2.135 2.452 0.490 0.244 0.061 0.812 0.645 3.410 8.174 0.758 0.880 9.606 3.843 0.434 0.488 1.024 1.559 0.642 0.773 2.429 1.813 0.889 1.325 3.344 3.839 0.268 nan 8.279 5.024 0.841 1.729 0.313 0.118 0.306 2.452 0.132 0.534 0.788 0.075 1260 chr10 132956156 132965609 + 0 NA intron (NM_174937, intron 6 of 11) intron (NM_174937, intron 6 of 11) 67401 NR_120623 101927489 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 0.503 1.107 0.797 0.430 8.535 4.832 0.531 0.095 0.041 0.232 0.271 1.952 0.614 0.034 0.072 0.256 0.129 0.028 0.120 0.430 0.512 0.949 0.315 0.088 0.064 0.035 0.127 1.545 1.686 0.155 0.125 0.194 0.259 0.283 0.294 0.045 0.086 1.709 0.723 0.301 0.373 0.110 0.050 0.531 1.952 0.155 0.043 0.032 0.013 2174 chr12 119870677 119887335 + 0 NA intron (NM_178499, intron 2 of 13) intron (NM_178499, intron 2 of 13) 106489 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding nan nan 0.500 0.068 0.718 0.304 0.780 0.068 0.077 0.281 0.124 0.293 0.900 0.051 0.097 0.240 0.187 0.175 0.130 nan nan nan 0.668 0.124 0.097 0.509 0.720 nan nan 0.549 0.300 0.152 0.132 0.165 0.277 0.228 0.272 nan 1.799 0.030 0.150 0.029 0.052 0.780 0.293 0.161 1.414 0.006 0.081 3445 chr17 47066627 47083833 + 0 NA exon (NM_001160423, exon 1 of 13) exon (NM_001160423, exon 1 of 13) 456 NM_001160423 10642 Hs.144936 NM_006546 ENSG00000159217 IGF2BP1 CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding 1.224 1.094 nan 0.184 0.305 0.116 0.112 0.114 0.132 0.073 0.145 0.056 0.374 4.274 0.131 0.330 0.284 0.533 0.763 0.231 nan 0.237 0.116 2.692 2.760 0.242 0.510 4.538 nan 7.279 7.109 0.129 0.194 0.164 0.230 8.073 9.451 0.157 0.262 0.032 2.248 0.039 0.037 0.112 0.056 0.006 0.006 0.046 4.186 2451 chr13 111789598 111807616 + 0 NA intron (NR_046516, intron 1 of 2) MER5A|DNA|hAT-Charlie 2305 NR_046516 100874226 Hs.577834 NR_046516 ARHGEF7-AS1 - ARHGEF7 antisense RNA 1 ncRNA 2.154 nan 3.113 2.113 1.062 0.516 1.794 0.460 0.110 0.661 0.312 3.847 1.722 0.431 0.074 2.289 2.174 1.318 1.984 3.842 3.981 2.800 1.311 1.101 1.237 0.190 0.339 3.132 4.013 1.274 1.253 1.383 2.104 1.741 2.009 1.269 1.047 0.515 0.327 0.712 1.432 0.696 2.331 1.794 3.847 0.306 1.267 0.352 0.274 8139 chr9 42717030 42730764 + 0 NA Intergenic AluSq2|SINE|Alu 5831 NM_199244 349334 Hs.712520 NM_199244 ENSG00000184659 FOXD4L4 FOXD4L2|FOXD4b|bA460E7.2 forkhead box D4-like 4 protein-coding 1.156 1.813 1.191 0.180 0.485 0.199 0.356 0.094 0.128 0.206 0.357 0.426 0.508 0.107 0.193 0.609 0.461 0.346 0.302 1.288 1.262 1.043 0.396 0.544 0.394 0.327 0.577 0.312 0.344 0.611 0.204 0.449 0.811 5.297 4.671 0.258 0.369 0.762 0.641 0.045 0.085 2.485 0.059 0.356 0.426 0.035 0.111 0.444 0.054 4626 chr2 179755663 179778143 + 0 NA intron (NM_173648, intron 8 of 23) L1PA3|LINE|L1 -94753 NM_001267550 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|MYLK5|TMD titin protein-coding 1.347 1.085 1.382 0.094 0.265 0.123 0.108 0.077 0.094 0.083 0.105 0.123 0.348 0.010 0.123 0.376 0.229 0.230 0.300 0.307 0.482 0.272 0.131 0.304 0.361 1.656 1.888 0.579 0.632 2.326 1.674 0.123 0.180 0.069 0.072 3.285 8.835 0.383 0.393 0.467 0.044 0.013 0.308 0.108 0.123 0.030 0.032 0.044 3.120 5885 chr4 48179839 48201282 + 0 NA intron (NM_003215, intron 2 of 17) intron (NM_003215, intron 2 of 17) -54287 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 0.631 nan nan 2.199 3.823 2.045 0.083 0.214 0.099 1.904 0.774 0.665 0.271 0.045 0.084 0.366 0.243 0.169 0.281 0.519 0.469 3.587 0.942 0.259 0.284 0.284 0.391 2.637 2.830 0.914 0.660 0.162 0.209 1.068 0.931 0.363 0.986 2.766 1.530 0.021 0.091 0.234 0.015 0.083 0.665 0.009 0.588 0.028 0.231 6990 chr6 136644652 136650174 + 0 NA Intergenic Intergenic -36424 NM_001077441 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 1.918 1.308 1.365 1.257 0.798 0.292 0.704 0.028 0.679 0.214 1.061 1.642 0.019 0.071 0.623 1.260 0.377 0.588 1.013 0.974 nan 1.682 0.436 0.389 0.789 0.999 1.653 2.244 1.054 0.752 0.515 0.921 0.692 1.154 2.515 nan 1.291 0.851 0.322 0.225 0.154 0.185 0.704 1.061 0.298 5.198 0.342 0.987 1885 chr12 28065425 28069841 + 0 NA Intergenic L1MA5|LINE|L1 55261 NM_198966 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding nan nan nan 0.178 0.049 0.036 0.096 0.086 0.212 0.019 0.029 0.131 0.074 0.194 0.219 0.130 0.146 0.260 0.379 0.356 0.171 0.056 0.367 0.335 1.048 1.486 0.127 0.133 1.215 1.626 0.159 0.392 0.252 0.283 0.664 1.129 0.325 0.374 0.040 0.066 0.159 0.096 0.029 5.368 0.023 0.068 0.333 3353 chr17 30500376 30527723 + 0 NA intron (NR_110083, intron 8 of 20) AluSz6|SINE|Alu -35459 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo nan 1.201 1.012 0.144 0.381 0.153 0.079 0.202 0.156 0.091 0.081 0.065 0.358 0.166 0.249 0.355 0.354 0.222 0.315 nan 0.445 0.434 0.196 0.386 0.364 0.358 0.605 0.444 0.500 nan 0.993 0.169 0.221 0.159 0.214 1.825 6.048 0.500 0.310 0.106 0.139 0.038 0.181 0.079 0.065 0.043 0.041 0.058 2.526 549 chr1 153601764 153610888 + 0 NA promoter-TSS (NM_001206612) promoter-TSS (NM_001206612) -132 NM_001206612 26097 Hs.611057 NM_015607 ENSG00000160679 CHTOP C1orf77|FL-SRAG|FOP|SRAG|SRAG-3|SRAG-5|pp7704 chromatin target of PRMT1 protein-coding nan nan 3.003 2.277 2.017 0.778 2.152 1.574 0.310 1.752 0.831 2.301 7.868 1.912 0.166 3.057 2.509 3.978 5.523 3.993 nan 4.141 2.781 5.232 5.571 1.958 2.857 2.579 4.139 3.534 3.742 3.804 4.972 2.019 2.966 5.467 6.613 1.395 0.842 1.281 2.821 0.559 1.056 2.152 2.301 0.504 1.991 1.515 2.233 3864 chr18 60733873 60745098 + 0 NA Intergenic Intergenic 247128 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 0.712 1.362 1.863 1.383 0.266 0.185 0.115 0.054 0.187 0.028 0.147 1.446 2.445 0.068 0.135 1.126 0.829 6.706 4.109 1.826 1.246 1.994 0.563 26.624 27.451 0.175 nan 3.197 3.325 0.479 0.235 0.908 1.186 0.311 0.497 0.143 0.238 1.815 1.356 0.222 0.104 0.051 0.284 0.115 1.446 0.199 0.564 0.033 5079 chr21 27103339 27110119 + 0 NA promoter-TSS (NM_001197297) promoter-TSS (NM_001197297) -529 NM_001197297 2551 Hs.473470 NM_002040 ENSG00000154727 GABPA E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07 GA binding protein transcription factor alpha subunit protein-coding 4.965 2.581 4.927 4.585 3.643 2.344 3.419 2.020 0.355 1.436 0.784 4.485 10.017 3.147 0.091 7.600 6.420 5.799 7.440 7.398 7.879 5.064 3.052 11.951 12.598 6.095 7.310 6.506 9.300 12.029 10.530 4.427 7.418 5.137 5.836 6.766 6.486 4.361 2.514 2.446 4.029 0.929 2.388 3.419 4.485 1.179 2.391 2.220 2.615 1397 chr11 44958172 44991541 + 0 NA Intergenic L2b|LINE|L2 -1999 NM_001258324 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding nan 2.408 2.010 0.564 3.846 1.968 1.255 0.375 0.131 0.513 0.311 1.285 3.081 0.461 0.089 0.802 1.645 0.552 0.832 2.124 1.704 2.369 0.633 0.135 0.114 1.592 2.232 0.443 0.753 3.815 3.693 0.631 0.771 0.962 0.967 0.976 nan 1.310 0.838 2.395 1.154 0.322 0.575 1.255 1.285 2.299 0.131 0.181 0.552 3678 chr18 19597934 19608315 + 0 NA Intergenic Intergenic 145805 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 0.582 0.653 1.068 0.673 0.145 0.062 0.444 0.101 0.078 0.167 0.140 0.073 0.322 0.042 0.060 0.417 0.215 0.273 0.497 0.280 0.377 9.617 2.350 0.369 0.291 0.087 0.188 0.104 0.116 0.912 0.787 0.183 0.223 0.284 0.164 0.404 0.638 0.548 0.591 0.043 0.051 0.019 0.069 0.444 0.073 0.069 0.029 0.133 583 chr1 156022361 156026433 + 0 NA promoter-TSS (NM_001145264) promoter-TSS (NM_001145264) -120 NM_001145264 28956 Hs.632483 NM_014017 ENSG00000116586 LAMTOR2 ENDAP|HSPC003|MAPBPIP|MAPKSP1AP|ROBLD3|Ragulator2|p14 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 protein-coding nan nan 6.494 4.164 4.333 3.111 5.341 2.831 0.436 2.991 1.047 4.708 31.801 4.894 0.163 7.623 6.832 7.547 10.862 9.376 nan 7.647 2.563 7.120 6.528 5.086 7.348 7.689 11.062 5.905 7.378 4.321 7.260 5.452 4.355 8.936 8.310 3.637 1.879 2.265 6.999 1.008 2.757 5.341 4.708 1.877 4.761 3.670 3.003 5063 chr21 16421810 16439125 + 0 NA intron (NM_003489, intron 1 of 3) MIR3|SINE|MIR 6659 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 2.896 1.106 nan 0.695 1.759 0.859 0.607 0.009 0.752 0.356 0.014 0.235 0.970 0.108 0.615 0.561 1.223 1.262 2.521 2.439 1.503 0.588 0.131 0.127 0.169 0.269 1.095 1.743 4.209 4.458 0.689 1.944 4.221 3.264 3.850 4.626 1.297 1.075 0.036 0.058 1.041 2.973 0.607 0.014 0.011 0.006 0.721 1.638 2341 chr13 72356916 72378951 + 0 NA intron (NM_080760, intron 2 of 8) AluJo|SINE|Alu 73397 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding nan 1.080 1.144 0.084 0.514 0.288 0.905 0.051 0.103 0.092 0.113 0.136 0.333 0.039 0.077 0.671 0.688 0.199 0.341 1.328 1.802 nan 0.151 0.110 0.122 0.686 0.838 0.252 0.256 nan 1.537 0.229 0.382 0.489 0.917 2.642 nan 0.188 0.188 0.028 0.144 0.225 0.237 0.905 0.136 0.392 0.023 0.081 1.335 5123 chr21 40053629 40074184 + 0 NA Intergenic Intergenic -30202 NM_004449 2078 Hs.473819 NM_004449 ENSG00000157554 ERG erg-3|p55 ERG, ETS transcription factor protein-coding nan 0.553 0.912 1.163 0.363 0.258 0.138 0.065 0.135 0.435 0.254 1.774 0.523 0.032 0.093 0.348 0.205 0.151 0.245 0.930 1.482 nan 1.088 0.138 0.100 0.126 nan 1.402 1.911 0.444 0.160 0.167 0.172 0.348 0.502 0.139 0.184 3.531 1.800 0.022 0.108 0.070 0.027 0.138 1.774 0.090 0.663 0.038 0.072 8022 chr9 3730802 3751822 + 0 NA Intergenic MIRb|SINE|MIR 73226 NR_121586 101929302 Hs.122828 NR_121586 ENSG00000232104 RFX3-AS1 CVAT7 RFX3 antisense RNA 1 ncRNA 0.677 1.703 0.728 0.117 0.256 0.068 0.497 0.211 0.076 0.164 0.215 0.097 0.413 2.577 0.132 0.228 0.151 2.759 8.718 0.361 0.401 0.271 0.108 0.249 0.298 0.876 1.392 0.305 0.354 0.414 0.169 0.243 0.323 0.148 0.189 0.123 nan 0.766 0.885 0.106 0.152 0.027 0.121 0.497 0.097 0.055 0.208 0.062 0.030 7288 chr7 55431644 55435989 + 0 NA exon (NM_018697, exon 1 of 9) exon (NM_018697, exon 1 of 9) 675 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding nan 7.601 11.356 6.707 6.270 3.249 6.998 3.108 0.295 4.842 2.351 10.190 12.564 6.936 0.257 14.310 13.966 10.339 13.266 18.601 17.008 13.487 6.255 12.440 12.384 5.168 6.788 16.809 21.261 8.938 9.596 6.766 12.748 8.574 7.075 7.687 5.734 5.414 3.021 10.576 4.018 1.209 3.728 6.998 10.190 1.830 5.468 2.943 2.337 7511 chr7 139702198 139720453 + 0 NA intron (NM_001130966, intron 14 of 16) ALINE|LINE|RTE 52196 NM_022750 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding nan nan nan 0.221 0.353 0.167 0.168 0.150 0.098 0.311 0.202 7.999 0.288 0.095 0.130 0.460 0.396 0.276 0.327 0.826 0.770 nan 0.277 0.571 0.585 0.148 nan 0.383 0.738 nan 0.240 0.375 0.355 0.151 0.208 0.322 0.674 1.696 nan 0.110 0.224 0.021 0.061 0.168 7.999 0.069 0.078 0.033 0.089 1572 chr11 92254663 92292567 + 0 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 188353 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 0.698 nan 0.584 0.248 0.233 0.105 0.264 0.145 0.051 0.115 0.131 0.120 0.758 0.075 0.119 4.150 3.637 3.063 nan 0.606 0.734 0.154 0.067 5.220 5.222 0.589 0.882 0.824 0.623 0.348 0.189 4.087 4.884 0.466 0.521 0.264 nan 0.796 0.571 0.192 0.188 0.103 0.071 0.264 0.120 0.015 0.115 2.582 0.166 2835 chr15 31771834 31780932 + 0 NA exon (NM_130901, exon 14 of 14) exon (NM_130901, exon 14 of 14) 157325 NM_015995 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 0.574 nan nan 0.067 0.238 0.178 0.296 0.097 0.070 0.189 0.166 0.184 0.260 0.108 0.059 0.620 1.143 0.166 0.357 0.549 0.791 0.380 0.133 0.173 0.187 0.367 0.553 0.229 0.305 1.408 1.389 0.297 0.380 0.209 0.260 0.224 0.226 0.149 0.118 0.071 0.048 0.041 0.070 0.296 0.184 1.340 0.063 0.054 0.076 3568 chr17 75131475 75173208 + 0 NA intron (NM_001039573, intron 3 of 17) intron (NM_001039573, intron 3 of 17) 15336 NM_003003 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 1.446 2.100 1.553 1.475 0.976 0.568 0.673 1.452 0.260 2.529 1.396 1.988 1.979 0.480 0.158 3.744 3.044 1.885 1.408 1.461 1.522 4.772 1.749 12.776 12.933 nan 1.320 1.768 2.774 1.231 0.872 1.386 1.870 2.572 3.353 0.663 1.099 nan 0.917 0.246 1.070 0.985 0.412 0.673 1.988 0.193 0.875 1.583 0.202 6273 chr5 56777384 56802032 + 0 NA Intergenic Intergenic -11072 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin, beta like 2 protein-coding nan nan 0.700 0.036 0.467 0.292 0.254 0.850 0.058 0.108 0.093 0.015 1.481 1.002 0.135 0.191 0.192 2.558 7.048 0.148 0.178 nan 0.077 0.152 0.136 1.144 1.343 0.258 0.220 nan 0.218 0.077 0.083 0.122 0.168 0.256 0.551 0.534 0.461 0.533 0.091 0.031 0.087 0.254 0.015 0.067 0.041 0.020 0.095 819 chr1 205598947 205607048 + 0 NA promoter-TSS (NM_021795) promoter-TSS (NM_021795) -997 NM_021795 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ELK4, ETS transcription factor protein-coding 5.144 4.839 6.827 2.485 3.659 1.905 2.905 2.182 0.238 1.825 0.980 3.156 4.818 2.488 0.182 3.110 3.480 5.231 8.219 6.126 5.373 3.694 2.282 nan nan 2.586 3.556 4.936 7.741 3.336 4.066 1.404 2.106 8.551 8.585 3.700 3.926 2.480 1.609 2.304 4.650 2.427 1.199 2.905 3.156 0.936 1.681 0.756 1.183 5280 chr22 41761774 41768503 + 0 NA intron (NM_001145398, intron 1 of 3) intron (NM_001145398, intron 1 of 3) 1801 NM_001145398 7008 Hs.181159 NM_003216 ENSG00000167074 TEF - TEF, PAR bZIP transcription factor protein-coding 3.207 nan 2.195 0.954 0.793 0.405 0.749 0.490 0.143 0.490 0.283 1.013 0.760 0.179 0.053 1.366 1.927 0.656 1.242 2.283 1.909 2.949 0.634 0.658 0.675 1.749 nan 4.857 6.464 10.179 13.976 0.572 0.646 0.586 0.827 1.358 3.264 0.878 0.722 0.935 3.880 0.126 0.684 0.749 1.013 1.717 0.662 0.117 1.509 1189 chr10 101765735 101788312 + 0 NA Intergenic AluSx|SINE|Alu -7313 NM_015221 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|TUBA dynamin binding protein protein-coding nan nan 0.932 0.556 1.201 0.569 0.278 0.381 0.107 0.309 0.157 2.087 3.518 0.826 0.096 0.772 1.233 0.821 0.913 2.814 2.581 5.365 1.613 0.486 0.477 0.996 nan 7.161 5.795 0.792 0.848 0.232 0.475 1.123 0.710 0.469 nan 1.790 0.923 3.486 1.805 0.405 0.095 0.278 2.087 0.231 1.150 0.176 0.182 3680 chr18 19836077 19856264 + 0 NA Intergenic Intergenic 96772 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 0.530 0.714 0.724 0.161 0.462 0.295 0.273 0.082 0.064 0.078 0.077 0.077 0.275 0.022 0.095 0.401 0.269 0.247 0.485 0.268 0.312 4.133 1.222 0.281 0.294 0.078 0.177 0.093 0.085 0.375 0.169 0.205 0.196 0.096 0.191 0.208 0.517 0.379 0.421 0.019 0.044 0.019 0.031 0.273 0.077 0.019 0.025 0.054 0.067 7440 chr7 114169048 114174938 + 0 NA intron (NM_148898, intron 2 of 17) intron (NM_148898, intron 2 of 17) 105436 NM_001172767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 2.072 1.008 2.514 0.208 1.796 0.766 0.435 1.726 0.219 0.374 0.364 3.152 0.899 0.095 0.173 0.575 0.339 0.363 1.631 0.399 0.561 5.129 8.641 0.262 0.383 2.588 3.306 2.409 6.321 1.010 0.696 0.148 0.402 3.752 4.315 1.357 2.485 0.907 0.721 0.142 2.330 0.861 0.656 0.435 3.152 0.247 0.275 0.118 1.102 5095 chr21 34119608 34145423 + 0 NA intron (NR_027873, intron 5 of 17) intron (NR_027873, intron 5 of 17) 11654 NR_027873 94104 Hs.644004 NM_013329 ENSG00000159086 PAXBP1 BM020|C21orf66|FSAP105|GCFC|GCFC1 PAX3 and PAX7 binding protein 1 protein-coding 1.910 1.244 2.065 0.809 1.013 0.515 0.625 0.483 0.094 0.368 0.183 0.859 2.131 0.516 0.104 1.628 1.470 1.771 2.517 1.903 1.927 1.980 0.668 2.430 2.453 1.486 1.861 1.621 2.555 3.116 2.885 0.994 1.827 1.118 1.096 2.091 4.055 nan 0.966 0.558 0.882 0.180 0.466 0.625 0.859 0.340 0.474 0.483 0.822 1054 chr10 17237294 17259875 + 0 NA Intergenic Intergenic -4514 NM_001321006 1787 Hs.351665 NM_004412 ENSG00000107614 TRDMT1 DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1 tRNA aspartic acid methyltransferase 1 protein-coding nan 1.005 1.144 0.553 0.484 0.259 0.171 3.121 0.435 0.273 0.117 0.531 0.566 0.580 0.106 1.505 1.641 2.679 5.201 0.967 0.961 1.193 0.585 0.705 0.688 3.015 3.702 1.027 1.565 0.640 0.577 0.488 0.667 0.068 0.081 0.642 0.583 0.465 0.369 0.414 0.211 0.013 0.145 0.171 0.531 0.022 0.234 0.351 0.263 7537 chr7 150634587 150641839 + 0 NA Intergenic Intergenic 14704 NM_001204798 3757 Hs.647099 NM_000238 ENSG00000055118 KCNH2 ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1 potassium voltage-gated channel subfamily H member 2 protein-coding 1.462 1.580 nan 0.717 0.547 0.283 0.296 0.134 0.556 0.424 0.765 2.198 0.075 0.103 0.982 1.662 0.330 0.273 2.945 2.359 1.165 0.473 0.499 0.506 0.463 0.630 2.212 1.843 0.580 0.526 0.817 0.915 0.628 0.459 0.855 2.440 1.902 1.226 4.039 7.701 0.052 0.057 0.296 0.765 0.616 0.281 0.539 1.110 2310 chr13 52333341 52346291 + 0 NA Intergenic Intergenic 38482 NM_001031719 79758 Hs.266728 NM_024705 ENSG00000102796 DHRS12 SDR40C1 dehydrogenase/reductase 12 protein-coding 0.802 nan nan 0.433 0.193 0.086 0.115 0.351 0.100 0.085 0.083 0.617 0.728 0.041 0.076 0.545 0.722 0.200 0.359 0.626 0.680 nan 0.278 0.303 0.252 0.324 0.486 1.021 1.210 0.549 0.407 0.561 0.855 0.168 0.197 0.826 nan 0.341 0.263 0.654 3.985 0.029 0.183 0.115 0.617 0.075 0.086 0.352 0.295 2495 chr14 24454041 24463522 + 0 NA intron (NM_198083, intron 1 of 7) intron (NM_198083, intron 1 of 7) 754 NM_198083 317749 Hs.743442 NM_198083 ENSG00000187630 DHRS4L2 SDR25C3 dehydrogenase/reductase 4 like 2 protein-coding nan 1.359 3.107 1.044 0.647 0.203 0.419 0.278 0.208 0.134 0.097 0.833 0.796 0.137 0.120 0.303 0.359 0.448 0.632 0.497 0.554 0.633 0.267 1.150 1.229 6.481 7.615 2.252 nan 1.545 1.758 0.352 0.556 0.538 0.502 0.410 0.824 1.138 0.681 0.477 0.882 0.252 0.387 0.419 0.833 0.350 1.872 0.344 0.169 5110 chr21 36507770 36526586 + 0 NA Intergenic Intergenic -95583 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 0.618 0.595 0.784 0.114 0.314 0.157 0.334 0.138 0.104 0.025 0.055 0.242 0.539 0.006 0.083 0.731 1.026 4.580 13.135 0.387 0.523 0.399 0.100 0.301 0.348 0.176 0.272 0.441 0.426 0.402 0.158 0.227 0.394 0.077 0.094 0.168 0.220 nan 0.681 0.075 0.189 0.010 0.025 0.334 0.242 0.026 0.027 0.079 0.026 3710 chr18 29950797 29972051 + 0 NA intron (NM_022751, intron 2 of 5) intron (NM_022751, intron 2 of 5) 89023 NM_022751 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 1.075 1.366 1.364 2.089 1.186 0.574 0.701 0.176 0.091 0.470 0.226 0.618 2.268 0.026 0.048 0.443 0.255 0.478 nan 0.709 0.718 2.749 0.658 0.233 0.222 0.428 0.649 4.569 4.172 0.434 0.294 0.086 0.199 2.290 3.863 0.424 0.816 1.648 1.414 0.218 0.367 0.421 0.090 0.701 0.618 0.165 1.372 0.057 0.208 6251 chr5 49961412 49966691 + 0 NA intron (NM_001331028, intron 2 of 25) intron (NM_001331028, intron 2 of 25) 671 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 2.287 7.535 2.105 0.603 0.416 0.397 2.671 0.723 0.245 2.043 0.864 1.956 14.292 7.300 0.188 1.594 2.459 6.925 9.797 6.126 5.196 10.656 4.772 7.992 7.163 0.165 0.356 1.816 3.851 3.188 4.843 8.896 13.349 0.733 0.724 0.385 0.454 2.395 1.667 4.440 10.413 0.484 1.116 2.671 1.956 3.386 6.274 0.583 6999 chr6 138501753 138512235 + 0 NA intron (NM_020340, intron 2 of 33) MIRb|SINE|MIR 23941 NM_020340 57221 Hs.194408 NM_020340 ENSG00000112379 ARFGEF3 A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1 ARFGEF family member 3 protein-coding 1.429 1.069 1.564 3.489 0.531 0.215 1.136 0.113 0.093 1.292 0.561 0.546 8.574 0.063 0.088 0.276 0.338 0.315 0.454 1.477 1.482 nan 2.760 0.269 0.313 0.499 0.694 3.536 2.820 0.884 0.445 0.356 0.882 3.065 4.871 0.130 nan 1.850 1.084 4.304 1.538 0.803 0.068 1.136 0.546 0.370 1.416 0.320 0.094 5573 chr3 139786989 139835023 + 0 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 156979 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 1.267 nan nan 0.111 0.590 0.308 0.390 0.260 0.154 0.166 0.225 0.153 0.279 0.014 0.066 0.478 0.466 1.474 0.837 0.406 0.479 3.367 1.218 0.230 0.246 2.307 3.271 0.225 0.236 nan 1.707 0.287 0.476 0.270 0.240 0.455 0.979 0.489 0.519 0.222 0.078 0.065 0.141 0.390 0.153 0.542 0.091 0.134 0.199 768 chr1 199880768 199885514 + 0 NA Intergenic Intergenic -113589 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 0.620 nan 0.948 0.220 0.312 0.169 0.239 0.140 0.171 0.068 0.219 0.151 0.284 0.023 0.104 0.397 0.452 11.436 3.283 0.357 0.570 0.141 0.065 1.027 1.094 0.280 nan 0.425 0.375 0.240 0.104 0.151 0.278 0.106 0.138 0.222 0.296 0.271 0.354 0.047 0.052 0.020 0.069 0.239 0.151 0.081 0.063 0.085 6971 chr6 134266551 134279819 + 0 NA promoter-TSS (NM_001253676) promoter-TSS (NM_001253676) -123 NM_001253676 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 1.846 1.209 4.567 1.290 1.043 0.540 1.667 0.875 0.157 0.936 0.541 1.155 3.574 2.035 0.141 1.586 1.585 1.321 1.716 3.340 2.679 nan 1.628 1.417 1.531 2.053 2.854 0.901 0.937 4.679 4.689 1.135 1.535 5.206 5.513 1.306 nan 1.894 0.791 0.350 1.567 1.522 0.577 1.667 1.155 0.701 1.405 0.396 0.577 338 chr1 61541519 61559863 + 0 NA intron (NM_001134673, intron 1 of 10) intron (NM_001134673, intron 1 of 10) 2711 NM_001134673 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 3.680 2.990 nan 0.922 1.698 0.844 0.662 2.614 0.281 1.483 0.825 0.862 5.360 1.699 0.172 0.935 1.631 2.228 3.234 2.070 1.860 0.206 0.142 0.860 0.908 nan nan 2.619 nan 2.420 2.635 0.321 0.945 2.409 2.293 0.879 1.689 3.397 1.787 2.296 1.543 0.541 1.511 0.662 0.862 0.752 1.668 0.602 0.466 5478 chr3 114798441 114821467 + 0 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) -9316 NR_046877 100874131 NR_046877 ENSG00000242767 ZBTB20-AS4 - ZBTB20 antisense RNA 4 ncRNA 1.325 nan 1.287 0.318 1.945 1.086 0.353 0.580 0.151 0.857 0.618 1.339 0.419 0.160 0.102 0.583 0.788 1.456 2.169 1.316 nan 4.014 1.487 0.405 0.394 nan 7.302 0.628 0.760 1.337 0.647 0.392 0.482 1.104 1.134 0.577 1.224 1.445 0.846 0.824 0.111 0.190 0.031 0.353 1.339 0.053 0.374 0.193 0.445 6144 chr5 3738427 3743693 + 0 NA Intergenic Intergenic 144892 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 0.442 0.734 0.719 0.167 0.171 0.062 0.442 0.125 0.123 0.097 0.172 0.159 0.390 0.020 0.043 0.648 0.523 8.818 7.265 0.538 0.541 0.062 0.067 0.074 0.091 0.204 0.281 nan 0.146 nan 0.392 0.295 0.305 0.008 0.066 0.093 0.070 0.326 nan 0.011 0.114 0.044 0.442 0.159 0.013 0.094 0.093 1223 chr10 119300288 119306172 + 0 NA intron (NM_001165924, intron 1 of 1) CpG -1130 NR_144378 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 0.630 nan 0.395 0.030 0.983 0.355 0.997 0.089 0.054 0.159 0.140 0.082 1.837 0.112 0.028 1.154 3.415 2.184 2.130 0.074 0.176 1.339 0.426 0.086 0.104 0.433 0.863 0.087 0.138 0.648 0.643 0.349 0.291 3.563 3.400 0.064 0.065 0.527 0.384 0.009 0.123 1.797 6.689 0.997 0.082 0.067 0.034 4014 chr19 30715781 30723809 + 0 NA Intergenic CpG -143505 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 5.493 0.388 0.522 0.065 3.283 1.887 3.153 0.057 0.160 0.041 0.052 0.831 0.444 0.498 0.075 0.247 0.267 0.271 0.453 0.198 0.181 0.144 0.082 0.171 0.152 3.921 6.483 0.101 0.160 nan 0.091 0.668 0.658 0.073 0.100 0.334 0.991 0.738 0.503 3.415 0.055 0.376 3.153 0.831 1.862 0.161 0.062 5001 chr20 50600698 50669148 + 0 NA Intergenic MIR|SINE|MIR 87100 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 0.921 1.177 0.648 0.117 0.292 0.129 0.419 1.363 0.423 0.131 0.136 0.139 0.457 3.381 0.212 0.573 nan 0.230 0.498 0.254 0.285 1.366 0.372 0.310 0.337 0.471 0.811 0.287 0.357 1.128 1.076 0.288 0.383 0.339 0.468 0.483 1.151 0.374 0.481 0.034 0.085 0.123 0.238 0.419 0.139 0.180 0.056 0.075 0.145 7368 chr7 90221968 90235484 + 0 NA intron (NM_001287135, intron 1 of 14) MIRb|SINE|MIR 3050 NM_001287135 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding nan 1.034 nan 0.578 1.255 0.593 0.930 2.738 0.301 1.095 0.825 1.341 2.299 0.724 0.182 2.961 3.223 1.781 1.708 2.455 2.101 1.708 0.558 11.194 11.321 1.800 2.333 1.359 1.469 1.059 1.214 1.961 4.832 1.258 0.865 0.867 nan 1.618 1.232 0.823 0.763 0.319 0.817 0.930 1.341 0.515 0.784 2.566 0.091 4108 chr19 47315643 47344461 + 0 NA Intergenic Intergenic 3909 NR_024258 100170220 Hs.541243 NR_024258 SNAR-E - small ILF3/NF90-associated RNA E snRNA 1.338 2.022 1.450 1.679 0.548 0.350 0.396 0.230 0.239 0.229 0.122 1.692 1.151 0.257 0.158 0.296 0.364 0.323 0.504 0.977 1.043 1.681 0.701 0.815 0.977 0.692 1.032 4.279 4.234 0.798 0.646 0.406 0.643 0.243 0.393 0.599 1.421 1.064 0.744 0.348 0.496 0.064 0.184 0.396 1.692 0.273 0.523 0.286 0.185 1687 chr11 118304219 118311154 + 0 NA intron (NM_001197104, intron 1 of 35) CpG-4806 481 NM_005933 4297 Hs.258855 NM_005933 ENSG00000118058 KMT2A ALL-1|CXXC7|HRX|HTRX1|MLL|MLL-AF9|MLL/GAS7|MLL1|MLL1A|TET1-MLL|TRX1|WDSTS lysine methyltransferase 2A protein-coding 3.073 2.658 2.334 4.604 3.597 2.240 4.198 0.702 0.046 2.874 1.490 4.619 11.651 4.366 0.165 7.479 nan 9.174 5.662 8.674 7.198 7.758 2.730 11.788 11.164 4.540 nan 5.405 6.877 5.752 6.719 9.734 16.500 4.553 2.979 4.716 5.441 2.944 1.505 3.843 5.303 1.631 3.601 4.198 4.619 0.800 2.947 7.554 2.081 3142 chr16 52572332 52614128 + 0 NA intron (NR_033920, intron 3 of 3) intron (NR_033920, intron 3 of 3) -11516 NM_001146188 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding nan nan nan 3.870 2.090 0.971 1.862 0.077 0.077 0.162 0.114 3.411 4.422 0.034 0.083 0.483 0.415 0.217 0.229 3.850 3.502 2.922 0.636 3.067 3.080 1.124 nan 8.534 nan nan 0.468 0.200 0.289 0.668 0.561 0.412 nan nan 0.660 1.619 1.810 0.098 0.297 1.862 3.411 0.189 1.065 0.062 0.094 4631 chr2 182531956 182562726 + 0 NA Intergenic Intergenic -1949 NM_002500 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 4.182 1.010 1.768 0.319 0.488 0.286 0.354 0.106 0.068 0.198 0.212 0.451 0.682 0.025 0.071 0.304 0.248 0.159 0.136 0.320 0.445 1.817 0.822 0.251 0.266 nan 7.067 0.884 1.114 11.325 15.320 0.111 0.247 0.663 0.628 3.952 nan 0.415 0.334 0.483 0.047 0.176 0.314 0.354 0.451 0.850 0.063 0.052 2.490 1657 chr11 113944641 113971343 + 0 NA intron (NM_001018011, intron 2 of 6) intron (NM_001018011, intron 2 of 6) 26704 NM_001018011 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 0.565 0.856 0.483 3.045 0.464 0.234 0.782 0.041 0.036 0.302 0.155 0.701 0.663 0.053 0.101 0.677 nan 0.112 0.162 0.880 0.813 0.663 0.180 0.112 0.114 0.286 nan 2.492 2.404 0.377 0.214 0.606 0.735 0.417 0.421 0.227 0.508 1.741 1.013 0.089 0.097 0.125 0.065 0.782 0.701 0.066 0.228 0.162 0.157 4659 chr2 198360091 198373053 + 0 NA intron (NM_001202485, intron 2 of 8) intron (NM_001202485, intron 2 of 8) -1574 NM_199440 3329 Hs.595053 NM_002156 ENSG00000144381 HSPD1 CPN60|GROEL|HLD4|HSP-60|HSP60|HSP65|HuCHA60|SPG13 heat shock protein family D (Hsp60) member 1 protein-coding 2.799 nan 2.201 2.967 4.632 2.469 1.793 0.864 0.199 1.081 0.894 2.244 7.052 1.526 0.123 1.792 2.585 2.275 3.606 3.153 3.319 2.899 1.588 7.497 7.236 2.211 2.558 3.914 5.318 5.308 5.887 3.445 8.101 2.092 2.010 5.397 6.375 1.475 0.710 1.458 1.481 0.442 1.615 1.793 2.244 0.772 1.388 1.230 4.128 6729 chr6 34503004 34524303 + 0 NA intron (NM_012391, intron 1 of 5) AluSx1|SINE|Alu 10457 NM_012391 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding nan 1.850 nan 0.363 0.305 0.181 0.325 0.176 0.113 0.650 0.376 0.355 1.415 0.122 0.080 0.551 0.699 0.270 nan nan 0.935 0.698 0.310 0.486 0.559 0.992 1.535 1.790 2.089 1.637 1.795 0.349 0.353 2.131 1.707 1.226 1.598 2.086 1.068 0.369 0.166 0.964 0.116 0.325 0.355 0.863 1.155 0.019 0.452 7512 chr7 139757839 139764238 + 0 NA intron (NM_022750, intron 1 of 11) MLT1J1|LTR|ERVL-MaLR 2483 NM_022750 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding nan nan nan 1.374 1.520 0.626 1.378 2.099 0.299 1.531 0.745 7.062 4.915 1.652 0.100 1.345 1.239 2.960 5.008 3.189 3.100 nan 1.091 5.614 5.721 0.171 nan 2.012 3.993 nan 1.181 2.598 2.832 1.149 1.302 0.476 0.444 3.038 nan 3.579 2.431 0.134 0.494 1.378 7.062 0.137 0.398 0.496 0.097 7788 chr8 92664754 92676908 + 0 NA Intergenic THE1B|LTR|ERVL-MaLR 359077 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 translocation partner 1 protein-coding nan 0.945 2.261 0.188 0.362 0.200 0.125 0.120 0.079 0.026 0.066 0.166 0.277 0.009 0.087 0.201 0.305 0.268 nan 0.559 0.721 0.427 0.153 0.187 0.111 1.569 1.559 0.667 0.700 5.701 5.907 0.106 0.157 0.287 0.438 1.831 5.786 0.299 0.302 0.050 0.089 0.063 1.195 0.125 0.166 0.548 0.041 0.065 5.017 2346 chr13 74706415 74711375 + 0 NA promoter-TSS (NM_007249) promoter-TSS (NM_007249) -829 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding nan 5.839 5.366 5.799 9.776 5.494 9.750 3.119 0.637 1.274 0.464 7.331 19.603 6.641 0.150 9.256 13.656 5.547 6.776 18.005 12.755 nan 4.136 4.824 4.484 0.767 0.996 3.750 6.668 nan 11.286 2.499 8.048 6.320 4.011 5.086 nan 1.058 0.837 5.813 9.696 1.905 10.831 9.750 7.331 2.137 1.864 4.757 2.396 7941 chr8 134244771 134264741 + 0 NA intron (NM_001135242, intron 14 of 15) MIRb|SINE|MIR 51474 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding nan 1.433 2.619 2.529 0.393 0.280 0.096 0.104 0.138 0.330 0.161 0.904 6.506 0.033 0.096 0.274 0.239 0.190 0.474 1.083 1.072 3.117 0.994 nan 1.226 0.221 0.422 3.171 2.561 1.248 1.484 0.326 0.585 0.534 0.338 0.563 1.537 0.966 0.693 0.676 0.963 0.067 0.100 0.096 0.904 0.286 1.320 0.417 0.712 1651 chr11 113183935 113189964 + 0 NA intron (NM_001318533, intron 1 of 21) intron (NM_001318533, intron 1 of 21) 1698 NM_017868 54970 Hs.288772 NM_017868 ENSG00000149292 TTC12 TPARM tetratricopeptide repeat domain 12 protein-coding 1.240 1.914 1.730 1.592 1.000 0.401 0.524 0.038 0.468 0.548 2.800 2.583 1.442 0.117 10.245 16.362 3.314 5.644 1.945 1.853 2.501 0.941 1.308 1.459 1.116 nan 4.519 5.742 1.539 1.239 1.600 3.023 3.899 5.088 1.337 2.271 0.957 0.628 0.293 0.341 1.871 0.210 0.524 2.800 0.339 0.809 1.839 0.328 5594 chr3 147109597 147112812 + 0 NA promoter-TSS (NR_033118) promoter-TSS (NR_033118) -987 NR_040762 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 0.632 nan nan 0.054 0.327 0.052 0.279 2.979 0.300 1.315 0.614 0.204 0.160 2.865 0.116 0.417 0.199 5.585 7.902 0.086 0.173 nan 0.075 27.405 28.157 0.533 nan 13.601 20.889 nan 18.698 0.220 0.183 0.071 0.016 2.250 1.335 0.330 0.287 0.358 0.030 0.025 0.279 0.204 2.108 0.083 0.202 7638 chr8 32395898 32426717 + 0 NA intron (NM_013964, intron 1 of 11) intron (NM_013964, intron 1 of 11) 5579 NM_001160002 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 0.500 0.884 nan 0.135 0.220 0.114 0.271 0.183 0.126 0.109 0.124 0.058 0.859 3.356 0.137 0.233 0.158 0.269 0.644 0.607 0.665 0.590 0.223 0.134 0.143 0.290 0.468 0.381 0.450 0.628 0.407 0.087 0.157 0.072 0.126 0.326 0.670 0.920 0.709 0.116 0.102 0.022 0.052 0.271 0.058 0.132 0.086 0.039 0.192 8307 chr9 134877668 134920670 + 0 NA intron (NM_004269, intron 2 of 7) intron (NM_004269, intron 2 of 7) 56105 NM_001253882 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding nan 1.128 2.161 1.925 1.324 0.682 0.322 0.277 0.150 0.596 0.386 1.094 2.957 0.053 0.075 1.041 1.052 0.414 0.645 3.049 2.940 nan 0.324 0.281 0.277 2.966 3.172 2.489 3.550 3.379 3.474 1.070 1.208 1.956 3.900 0.581 1.179 1.805 1.117 0.573 2.086 0.689 0.194 0.322 1.094 0.697 1.817 0.985 0.775 8010 chr9 1047110 1062478 + 0 NA intron (NM_181872, intron 3 of 3) intron (NM_181872, intron 3 of 3) 4174 NM_181872 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 0.348 2.104 1.501 0.573 0.202 0.115 1.082 0.044 0.063 0.051 0.075 0.346 1.053 0.057 0.085 0.217 0.191 0.807 0.667 1.445 1.264 0.126 0.069 11.600 11.284 0.839 1.330 0.915 1.121 0.913 0.891 0.228 0.461 0.071 0.071 0.045 nan 0.581 0.658 0.011 0.458 0.018 0.016 1.082 0.346 0.042 0.041 0.155 0.024 8015 chr9 2254048 2270782 + 0 NA Intergenic MIRc|SINE|MIR 103959 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 0.897 1.660 0.989 0.438 0.668 0.307 1.596 0.077 0.049 1.224 0.448 1.540 1.676 0.032 0.113 0.258 0.183 0.216 0.398 0.919 1.116 3.711 1.507 0.233 0.246 1.042 1.736 1.555 1.003 0.437 0.302 0.215 0.272 0.487 0.580 0.248 nan 4.438 2.340 1.544 1.697 0.086 0.047 1.596 1.540 0.168 0.127 0.053 0.052 8309 chr9 135416524 135425440 + 0 NA intron (NM_207417, intron 6 of 6) intron (NM_207417, intron 6 of 6) -37011 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding nan 0.690 1.286 0.806 0.598 0.215 1.484 0.093 0.054 0.352 0.283 0.831 1.001 0.049 0.083 1.227 1.882 0.371 0.557 1.743 1.596 nan 0.095 0.281 0.338 0.790 0.896 0.687 1.235 1.562 1.513 0.910 0.919 6.455 6.060 0.903 1.625 1.428 0.836 0.275 0.109 1.880 1.477 1.484 0.831 0.980 0.172 0.999 0.264 6325 chr5 72732670 72750511 + 0 NA TTS (NM_004472) TTS (NM_004472) 2762 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 2.116 nan 1.183 3.266 1.537 0.704 1.686 0.661 0.137 0.393 0.203 1.795 2.938 1.823 0.150 1.474 1.871 1.151 1.452 2.016 1.539 nan 2.838 0.440 0.513 0.799 nan 1.283 1.841 1.955 2.275 1.529 2.637 0.895 0.574 0.744 0.896 0.743 0.570 0.728 1.822 0.107 0.840 1.686 1.795 0.153 0.186 0.789 0.201 5990 chr4 111943524 111952518 + 0 NA Intergenic THE1D|LTR|ERVL-MaLR -384742 NM_001204398 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 0.647 0.652 0.517 0.079 0.233 0.090 0.014 0.102 0.090 0.030 0.062 0.063 0.226 0.023 0.126 0.762 0.352 9.372 0.908 0.119 0.176 0.079 0.041 0.473 0.501 0.250 0.276 0.238 0.255 0.193 0.043 0.194 0.360 0.032 0.095 0.388 0.751 0.113 0.206 0.006 0.030 0.008 0.014 0.063 0.033 0.071 0.072 226 chr1 38313482 38329224 + 0 NA intron (NM_005955, intron 2 of 10) AluSq|SINE|Alu 3939 NM_005955 4520 Hs.471991 NM_005955 ENSG00000188786 MTF1 MTF-1|ZRF metal regulatory transcription factor 1 protein-coding 1.896 nan 1.473 2.333 1.118 0.529 0.591 0.607 0.205 0.526 0.479 1.050 2.338 0.912 0.162 0.787 1.043 0.874 1.482 1.946 1.914 nan 0.578 1.838 1.934 1.750 2.291 7.468 8.438 nan 1.513 1.274 1.997 0.639 0.596 1.764 2.319 1.124 nan 0.466 0.600 0.031 0.349 0.591 1.050 0.265 0.389 0.452 0.515 62 chr1 8720488 8793576 + 0 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 120667 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 1.928 nan 1.983 10.302 1.141 0.552 0.623 1.001 0.203 0.784 0.545 0.765 2.483 1.895 0.184 0.924 0.816 0.890 1.999 2.650 2.409 1.818 0.658 1.861 1.833 2.746 nan nan 8.113 nan 1.980 0.772 1.289 0.844 1.295 2.261 4.396 1.592 0.938 1.065 0.913 0.208 0.655 0.623 0.765 0.281 0.565 0.656 1.107 6812 chr6 52970186 52990001 + 0 NA Intergenic MER34A|LTR|ERV1 33531 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing homolog 1 protein-coding 1.508 1.795 nan 0.440 0.334 0.210 0.227 0.166 0.057 0.367 0.125 0.520 0.465 0.077 0.150 0.470 0.447 5.623 3.953 0.367 0.419 4.490 1.210 0.401 0.402 0.196 0.452 3.381 3.145 0.465 0.286 0.245 0.429 3.674 4.097 0.458 1.008 1.512 0.912 0.049 0.086 1.207 0.181 0.227 0.520 0.025 0.632 0.183 0.189 2046 chr12 81076464 81080515 + 0 NA Intergenic Intergenic -22919 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 0.884 0.771 0.633 0.088 0.838 0.593 0.182 0.093 0.620 0.340 0.587 0.224 0.028 0.079 3.559 3.352 1.934 0.896 0.402 0.498 0.261 0.136 0.323 0.449 0.357 0.464 3.315 3.695 0.241 0.078 0.156 0.212 9.579 12.972 0.262 0.488 0.527 0.472 0.027 0.066 1.533 0.020 0.587 0.025 0.125 7985 chr8 143472146 143495052 + 0 NA intron (NM_001291931, intron 1 of 10) intron (NM_001291931, intron 1 of 10) 1011 NM_001291931 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 1.712 0.903 nan 0.941 0.790 0.468 0.571 0.111 0.091 0.240 0.154 1.507 2.738 0.304 0.056 1.302 1.831 0.488 0.659 nan 3.335 nan 0.421 1.093 0.980 0.562 0.876 1.335 1.998 0.800 0.745 0.902 1.352 0.970 1.048 0.525 0.598 0.920 0.736 4.983 0.962 0.187 0.243 0.571 1.507 0.476 0.737 0.453 0.184 1445 chr11 61731551 61743504 + 0 NA Intergenic L1M5|LINE|L1 -2395 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding nan 3.529 2.404 4.374 4.070 1.984 3.038 5.625 0.430 1.894 0.845 3.638 11.871 2.715 0.180 5.942 6.049 3.980 9.271 5.064 4.993 5.787 2.022 9.883 10.508 4.788 5.280 5.775 7.614 2.553 2.379 3.451 5.008 4.091 7.760 1.093 1.655 2.559 1.380 4.851 4.030 0.672 1.417 3.038 3.638 1.259 3.111 1.962 0.353 1992 chr12 63300370 63319532 + 0 NA intron (NM_020700, intron 1 of 9) L2c|LINE|L2 18714 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 1.751 0.917 2.078 0.790 0.266 0.125 0.998 0.425 0.143 0.520 0.521 0.782 0.731 0.017 0.091 0.461 0.645 0.602 1.043 0.888 nan 5.945 1.554 0.358 0.345 1.043 1.350 2.165 1.570 1.115 0.869 0.974 1.434 1.425 1.644 0.162 0.212 3.518 1.735 0.113 1.430 0.164 0.078 0.998 0.782 0.193 0.364 1.674 0.282 4248 chr2 20633438 20649142 + 0 NA Intergenic Charlie5|DNA|hAT-Charlie -5542 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 1.980 1.650 1.391 0.813 1.264 0.570 1.115 0.575 0.215 2.226 0.867 2.173 5.649 0.996 0.169 0.808 0.950 1.394 2.341 1.678 1.370 2.441 2.078 2.479 2.556 1.533 2.071 1.642 nan 2.186 2.308 0.661 1.270 1.400 1.774 1.517 1.483 2.262 1.175 1.417 1.737 0.347 0.912 1.115 2.173 0.581 1.332 0.200 0.329 4534 chr2 144152688 144162550 + 0 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 270720 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 0.897 nan 1.029 0.107 0.326 0.224 0.378 0.712 0.148 0.126 0.101 0.572 1.140 0.033 0.081 0.238 0.158 0.405 0.775 0.570 0.741 0.757 0.185 0.339 0.315 5.428 5.226 0.729 0.956 1.448 1.097 0.105 0.221 0.050 0.036 0.359 0.748 0.414 0.349 0.384 0.044 0.048 0.410 0.378 0.572 0.184 0.124 0.148 0.080 778 chr1 201970900 202088518 + 0 NA Intergenic AluSz|SINE|Alu 50019 NM_001114309 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 1.677 3.917 1.962 2.467 3.937 2.036 0.895 0.202 0.190 2.176 1.008 2.814 5.982 0.078 0.115 1.979 3.013 1.664 4.133 2.433 2.629 3.663 0.898 nan nan 0.448 0.787 4.670 5.798 0.739 0.592 1.024 1.832 3.209 2.956 0.504 1.078 1.798 0.942 2.342 4.550 1.159 0.760 0.895 2.814 0.358 0.673 1.730 0.163 7664 chr8 48421337 48453868 + 0 NA intron (NR_104581, intron 6 of 16) intron (NR_104581, intron 6 of 16) 213124 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 1.156 nan 0.722 0.327 0.318 0.232 0.177 1.419 0.134 0.179 0.141 0.302 0.683 0.982 0.116 0.527 0.360 3.291 5.564 0.532 0.602 0.459 0.144 0.618 0.669 0.418 0.772 0.467 0.436 0.344 0.160 0.228 0.473 0.437 0.554 0.308 0.644 0.883 0.734 0.055 0.091 0.099 0.095 0.177 0.302 0.018 0.667 0.097 0.170 579 chr1 155821956 155832354 + 0 NA promoter-TSS (NM_032292) promoter-TSS (NM_032292) -69 NM_001282858 54856 Hs.656361 NM_032292 ENSG00000116580 GON4L GON-4|GON4|YARP gon-4 like protein-coding nan nan 1.967 2.068 2.139 1.421 4.293 1.738 0.401 3.324 1.304 3.160 15.301 3.163 0.170 2.701 2.782 2.186 2.767 7.967 nan 7.128 4.929 1.330 1.816 4.979 5.767 3.885 7.689 4.629 4.292 2.585 3.098 3.716 4.768 3.947 5.365 2.475 1.158 1.749 1.284 0.723 0.960 4.293 3.160 1.110 3.365 1.384 1.517 3136 chr16 49729148 49738739 + 0 NA intron (NM_001271620, intron 3 of 7) intron (NM_001271620, intron 3 of 7) -35801 NM_001330533 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 1.537 3.042 1.076 0.045 1.024 0.413 11.800 0.071 0.017 0.083 0.017 0.133 0.393 0.092 0.072 0.193 0.210 0.092 0.146 1.725 1.724 4.959 1.778 0.121 0.063 0.734 1.116 0.199 0.316 1.993 1.827 0.123 0.193 2.697 2.840 0.727 1.292 2.056 0.957 0.006 0.065 0.863 0.365 11.800 0.133 1.644 0.021 0.128 4317 chr2 45150857 45174316 + 0 NA Intergenic CpG 6060 NR_103785 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 2.355 nan 2.428 0.675 1.307 0.767 1.658 0.095 0.069 0.403 0.194 1.653 2.895 3.017 0.122 0.298 0.222 1.574 2.005 nan 3.161 1.376 0.559 1.445 1.624 0.506 0.833 1.736 2.252 1.187 1.332 0.193 0.319 2.346 1.920 4.165 nan nan 0.682 0.470 0.747 1.216 0.206 1.658 1.653 0.224 0.475 0.034 3.804 6042 chr4 146738246 146747014 + 0 NA intron (NM_001306215, intron 8 of 14) intron (NM_001306215, intron 8 of 14) 117482 NM_001306215 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 1.653 0.787 2.423 0.258 0.290 0.290 0.162 0.321 0.074 0.411 0.246 0.437 0.225 0.098 0.050 0.319 0.831 0.309 0.538 0.955 0.841 0.344 0.159 0.131 0.211 0.720 1.167 0.601 0.590 2.519 2.421 0.172 0.335 0.179 0.189 0.465 0.957 0.782 0.647 0.019 0.152 0.021 3.913 0.162 0.437 0.444 0.150 0.034 0.480 2610 chr14 57342704 57373142 + 0 NA intron (NR_029385, intron 1 of 3) intron (NR_029385, intron 1 of 3) 78022 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA nan nan 2.543 0.252 0.701 0.374 0.425 0.100 0.058 0.077 0.128 0.285 0.401 0.050 0.124 0.417 0.291 1.813 1.052 0.350 0.395 0.484 0.149 0.414 0.505 0.144 0.222 0.321 0.375 0.973 0.541 0.252 0.406 0.198 0.334 3.352 10.787 nan 0.551 0.036 0.140 0.041 0.114 0.425 0.285 0.057 0.030 0.189 2.237 4419 chr2 85959433 86027026 + 0 NA intron (NM_032827, intron 2 of 2) MIR|SINE|MIR 12320 NM_032827 84913 Hs.135569 NM_032827 ENSG00000168874 ATOH8 HATH6|bHLHa21 atonal bHLH transcription factor 8 protein-coding nan 0.712 nan 0.250 0.470 0.201 0.871 0.912 0.149 0.155 0.167 1.029 1.725 0.114 0.105 0.770 1.306 0.694 2.421 1.953 1.483 0.699 0.188 0.488 0.581 2.941 3.999 1.045 0.773 1.801 1.980 0.329 0.340 0.376 0.466 1.136 2.877 2.016 1.168 2.766 0.249 0.126 0.098 0.871 1.029 1.027 0.510 0.060 0.889 496 chr1 145433042 145457775 + 0 NA intron (NM_001039703, intron 68 of 85) AluJb|SINE|Alu 6061 NM_001313972 10628 Hs.533977 NM_006472 ENSG00000265972 TXNIP ARRDC6|EST01027|HHCPA78|THIF|VDUP1 thioredoxin interacting protein protein-coding 2.393 nan 2.925 2.465 2.200 1.084 3.043 1.865 0.340 1.473 0.938 1.822 12.041 0.304 0.132 1.194 2.119 1.545 2.763 4.107 3.894 3.276 0.876 1.975 2.095 1.915 2.219 4.558 4.056 2.594 2.721 1.760 2.688 1.671 1.900 1.227 3.481 1.862 1.017 3.061 6.996 0.587 0.646 3.043 1.822 0.590 1.571 1.825 1.266 3999 chr19 18833609 18850433 + 0 NA intron (NM_001098482, intron 1 of 14) MLT1C|LTR|ERVL-MaLR 47596 NM_001098482 23373 Hs.371096 NM_015321 ENSG00000105662 CRTC1 MECT1|TORC-1|TORC1|WAMTP1 CREB regulated transcription coactivator 1 protein-coding 1.835 1.343 2.607 0.204 0.355 0.191 0.233 0.101 0.147 0.139 0.127 0.405 0.423 0.052 0.048 0.715 1.180 0.254 0.342 0.975 0.965 0.650 0.338 0.524 0.637 0.556 1.058 1.394 1.659 1.776 1.583 0.271 0.300 0.144 0.179 2.323 7.070 0.710 0.433 1.100 0.308 0.023 0.119 0.233 0.405 0.264 0.271 0.054 2.060 7650 chr8 38028543 38036280 + 0 NA intron (NR_045493, intron 1 of 3) AluSx1|SINE|Alu -1695 NM_001204878 9530 Hs.194726 NM_004874 ENSG00000156735 BAG4 BAG-4|SODD BCL2 associated athanogene 4 protein-coding 2.511 2.221 nan 9.212 2.901 1.472 1.637 1.653 0.292 1.395 0.804 3.250 5.879 2.877 0.181 3.892 3.685 3.592 5.744 5.926 5.317 4.379 1.678 6.959 7.425 2.763 3.271 2.819 4.082 4.120 3.851 1.369 3.818 2.389 3.091 3.542 4.164 2.885 1.316 1.534 2.084 0.601 0.656 1.637 3.250 0.701 1.950 1.113 1.562 3257 chr17 7135058 7147566 + 0 NA intron (NM_024297, intron 1 of 4) CpG 937 NM_001284518 79142 Hs.644724 NM_024297 ENSG00000040633 PHF23 hJUNE-1b PHD finger protein 23 protein-coding 4.759 2.146 3.124 3.240 4.258 2.545 3.517 1.909 0.250 1.165 0.526 4.287 7.606 11.101 0.379 5.297 6.065 4.795 6.400 8.158 7.305 6.047 2.477 8.037 8.547 3.570 4.901 6.920 9.708 3.441 3.409 1.671 3.047 2.858 3.505 7.350 8.799 2.167 0.963 3.450 2.628 0.671 1.742 3.517 4.287 1.774 3.349 1.446 3.082 8278 chr9 129880911 129897424 + 0 NA intron (NM_001190728, intron 7 of 16) L1MEf|LINE|L1 -4123 NM_012098 23452 Hs.653262 NM_012098 ENSG00000136859 ANGPTL2 ARP2|HARP angiopoietin like 2 protein-coding nan nan 3.711 0.303 0.403 0.233 0.924 0.228 0.080 0.181 0.101 0.457 nan 0.046 0.052 0.357 0.452 0.193 0.368 0.858 0.833 0.696 0.208 0.734 0.825 2.187 nan 2.326 4.462 6.811 8.562 0.241 0.291 2.617 2.793 1.215 2.163 nan 0.992 0.737 1.860 1.260 0.288 0.924 0.457 1.983 2.214 0.079 0.761 2726 chr14 89644213 89660103 + 0 NA intron (NM_005197, intron 4 of 5) intron (NM_005197, intron 4 of 5) 231296 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 2.552 1.132 nan 1.437 0.795 0.465 1.077 0.345 0.152 1.090 0.480 2.752 1.137 0.094 0.101 0.874 1.419 0.246 0.495 1.711 1.903 2.251 2.716 0.471 0.526 2.863 3.766 1.513 2.531 1.858 1.970 0.194 0.394 3.454 3.192 0.462 0.662 nan 1.513 0.325 0.209 1.179 2.326 1.077 2.752 0.082 0.095 0.087 0.171 6182 chr5 14184196 14206274 + 0 NA intron (NM_007118, intron 1 of 56) L1MC4|LINE|L1 51424 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding nan nan nan 1.208 1.094 0.600 0.852 2.643 0.357 1.478 0.819 0.619 nan 0.502 0.135 0.511 0.525 0.458 0.746 2.010 1.774 1.188 0.337 0.232 0.197 nan 2.167 3.567 4.469 1.185 0.999 0.522 0.875 0.857 1.197 0.303 nan 3.680 2.205 0.730 0.846 0.089 0.036 0.852 0.619 0.128 1.480 0.392 0.169 7047 chr6 151709841 151713646 + 0 NA intron (NM_020861, intron 1 of 2) CpG 1092 NM_020861 57621 Hs.520073 NM_020861 ENSG00000181472 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 9.304 4.800 8.255 9.277 8.570 4.952 10.934 5.117 0.370 2.378 1.053 9.796 14.395 9.376 0.244 10.807 11.389 13.013 14.472 13.173 nan 14.789 6.908 18.043 18.889 3.730 5.042 8.459 12.969 13.012 15.696 4.760 10.601 8.854 8.428 9.847 10.548 2.137 1.284 6.958 8.024 2.166 5.730 10.934 9.796 2.467 5.064 3.481 4.399 4257 chr2 24618493 24628531 + 0 NA Intergenic Intergenic -40115 NM_006277 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 0.871 0.858 0.723 2.367 0.455 0.223 1.733 0.097 0.147 0.954 0.554 0.843 3.523 0.141 0.152 0.924 0.777 0.487 0.590 0.906 1.134 6.751 3.349 0.897 1.053 0.314 0.500 4.772 nan 0.626 0.376 0.836 0.988 0.711 0.876 0.233 0.462 3.607 1.747 0.097 0.570 0.086 0.134 1.733 0.843 0.048 0.665 0.729 0.099 7224 chr7 27221434 27229721 + 0 NA promoter-TSS (NM_005523) promoter-TSS (NM_005523) 550 NR_002795 221883 Hs.587427 NR_002795 ENSG00000240990 HOXA11-AS HOXA-AS5|HOXA11-AS1|HOXA11AS|HOXA11S|NCRNA00076 HOXA11 antisense RNA ncRNA 12.518 1.416 1.483 0.405 0.579 0.368 0.400 0.576 0.174 1.175 0.760 0.623 1.273 0.932 0.139 1.648 2.168 2.785 nan 2.583 2.176 2.999 0.553 0.739 0.773 3.209 4.238 1.739 1.753 1.341 1.522 2.325 3.986 3.688 2.818 0.567 nan 2.458 1.470 1.525 0.685 1.214 0.361 0.400 0.623 0.918 0.137 1.157 0.761 6314 chr5 71101715 71110924 + 0 NA Intergenic Intergenic 91329 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 0.939 nan 0.773 0.104 2.712 1.152 0.279 0.146 0.105 0.258 0.253 0.078 0.532 0.078 0.186 0.226 0.184 0.189 0.332 0.271 0.307 nan 2.111 0.109 0.095 0.583 nan 0.313 0.285 0.505 0.264 0.130 0.208 2.472 2.608 0.260 0.890 1.167 0.699 0.079 0.117 0.423 0.042 0.279 0.078 0.011 0.210 0.032 0.223 5819 chr4 1865749 1876446 + 0 NA Intergenic AluSx1|SINE|Alu -2026 NM_001042424 7468 Hs.113876 NM_007331 ENSG00000109685 NSD2 KMT3F|KMT3G|MMSET|REIIBP|TRX5|WHS|WHSC1 nuclear receptor binding SET domain protein 2 protein-coding 3.519 2.183 nan 5.922 4.462 2.398 3.257 1.317 0.226 3.939 1.433 3.986 5.022 1.806 0.103 3.932 3.884 3.932 4.902 4.486 4.092 8.242 3.645 7.984 7.065 1.433 2.073 7.289 10.803 4.128 4.128 2.069 3.850 3.377 2.997 3.410 3.432 nan 1.662 2.533 6.002 0.603 2.430 3.257 3.986 0.572 0.901 1.077 1.591 4545 chr2 151244486 151286980 + 0 NA Intergenic Intergenic 78476 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding nan 0.574 nan 0.102 0.321 0.170 0.190 0.211 0.095 0.096 0.087 0.104 0.763 2.075 0.099 0.568 0.649 0.325 0.508 0.483 0.493 0.579 0.148 0.378 0.348 0.605 0.909 0.380 0.247 1.003 0.817 0.185 0.249 0.133 0.130 0.229 0.354 0.328 0.326 1.737 0.412 0.040 0.147 0.190 0.104 0.051 0.040 0.097 0.041 5273 chr22 39914468 39932231 + 0 NA Intergenic AluSx|SINE|Alu 5511 NM_194326 91582 Hs.526933 NM_194326 ENSG00000187051 RPS19BP1 AROS|S19BP ribosomal protein S19 binding protein 1 protein-coding 3.488 nan 3.029 2.737 4.717 2.536 2.650 1.354 0.175 1.562 0.800 5.516 4.845 3.413 0.153 3.999 4.321 3.727 5.139 5.545 5.212 4.949 2.228 3.766 3.714 2.464 nan 5.396 6.632 nan 5.446 1.810 3.246 3.027 4.196 3.003 3.952 2.122 1.086 2.172 2.962 0.836 2.200 2.650 5.516 1.274 2.616 0.964 1.205 6542 chr5 169526806 169535200 + 0 NA Intergenic Intergenic -1914 NM_012188 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding nan 0.673 0.706 0.021 0.251 0.114 0.046 0.160 0.057 0.076 0.048 0.043 0.472 0.026 0.067 0.311 0.355 5.229 3.658 0.508 0.358 0.159 0.050 1.551 1.598 0.101 0.231 0.393 0.682 0.411 0.275 0.206 0.292 0.341 0.361 0.080 0.168 1.991 0.955 0.020 0.108 0.068 0.057 0.046 0.043 0.070 0.024 0.118 0.014 1221 chr10 115837677 115843646 + 0 NA Intergenic L1MC4a|LINE|L1 36855 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 0.467 nan 0.548 0.125 0.385 0.321 0.086 0.145 0.215 0.130 0.081 0.040 0.227 0.023 0.062 0.371 0.382 9.851 3.626 0.120 0.117 5.996 2.292 1.242 1.259 0.219 0.355 0.527 0.578 0.211 0.075 0.186 0.188 0.119 0.201 0.164 0.220 0.303 0.346 0.009 0.057 0.032 0.025 0.086 0.040 0.033 0.068 0.049 0.046 1200 chr10 103872344 103883683 + 0 NA intron (NM_001113407, intron 1 of 10) intron (NM_001113407, intron 1 of 10) 2217 NM_001113407 8861 Hs.454418 NM_003893 ENSG00000198728 LDB1 CLIM-2|CLIM2|LDB-1|NLI LIM domain binding 1 protein-coding nan nan 4.091 1.679 4.484 2.280 2.244 1.667 0.347 1.245 0.773 4.371 6.215 2.377 0.106 3.462 4.700 2.033 2.680 4.879 5.020 2.547 0.897 1.441 1.632 2.404 nan 6.318 6.889 2.305 2.771 1.732 2.713 1.894 1.640 2.894 nan 1.199 0.578 2.792 2.611 0.864 0.832 2.244 4.371 1.036 2.079 1.819 3.400 1598 chr11 100547356 100565021 + 0 NA non-coding (NR_133571, exon 2 of 2) non-coding (NR_133571, exon 2 of 2) -2219 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 1.042 1.068 0.846 0.060 0.532 0.300 0.332 0.498 0.110 0.256 0.186 0.028 1.182 0.086 0.076 0.441 0.375 0.599 1.497 0.642 0.560 0.105 0.083 1.714 1.771 4.232 4.744 0.152 0.180 0.592 0.287 0.153 0.312 0.459 0.445 0.632 1.615 1.731 0.979 0.029 0.060 0.076 0.414 0.332 0.028 0.089 0.812 0.045 0.509 1856 chr12 18293476 18306797 + 0 NA Intergenic Intergenic -57009 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 0.802 5.577 0.824 0.401 0.277 0.205 0.459 0.147 0.069 0.130 0.148 0.027 0.937 0.049 0.118 0.187 0.121 0.333 0.528 nan 0.560 0.715 0.263 0.222 0.252 0.569 0.749 0.410 0.434 0.405 0.126 0.101 0.211 0.308 0.339 0.420 0.900 0.423 0.310 0.197 0.046 0.051 0.246 0.459 0.027 0.023 0.037 0.092 394 chr1 87791685 87805113 + 0 NA intron (NM_006769, intron 2 of 4) intron (NM_006769, intron 2 of 4) 4248 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 4.119 nan nan 3.914 4.796 2.751 1.995 1.785 0.215 1.563 0.724 2.764 8.790 0.863 0.144 2.835 2.620 3.704 4.582 3.721 2.690 2.143 0.749 6.611 6.482 5.073 6.502 7.039 8.678 1.618 1.590 2.170 3.942 4.362 3.798 2.560 3.491 2.535 1.385 2.229 1.087 1.268 3.755 1.995 2.764 0.333 1.258 1.578 2.105 1519 chr11 73086653 73104911 + 0 NA intron (NM_032871, intron 1 of 10) intron (NM_032871, intron 1 of 10) 8069 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT TNFRSF19L|TRLT RELT tumor necrosis factor receptor protein-coding nan 1.129 1.656 0.265 1.023 0.473 0.650 0.425 0.035 0.293 0.178 0.584 1.823 0.689 0.094 2.605 4.614 1.500 2.054 1.718 1.784 1.205 0.462 3.937 4.052 1.591 2.239 1.733 2.712 0.888 0.940 1.686 2.569 0.726 0.738 0.697 1.073 0.760 0.638 1.478 0.642 0.146 0.388 0.650 0.584 0.243 0.501 0.769 0.183 2089 chr12 95976121 95989936 + 0 NA Intergenic Intergenic -37762 NM_032147 84101 Hs.646421 NM_032147 ENSG00000136014 USP44 - ubiquitin specific peptidase 44 protein-coding 0.736 0.758 0.884 0.140 0.307 0.127 0.152 0.264 0.220 0.512 0.389 0.562 nan 0.054 0.142 0.313 0.194 0.285 0.829 0.543 0.585 0.769 0.180 0.279 0.281 0.690 nan 0.489 nan 0.388 0.171 0.172 0.282 0.182 0.213 0.341 0.671 3.351 1.594 0.032 0.085 0.028 0.057 0.152 0.562 0.028 0.632 0.044 0.099 7344 chr7 80388678 80414368 + 0 NA intron (NM_006379, intron 12 of 17) intron (NM_006379, intron 12 of 17) 125554 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 1.133 0.857 1.000 0.127 0.258 0.137 0.927 0.808 0.177 0.242 0.223 0.077 0.417 0.321 0.173 0.437 0.313 0.368 0.514 0.317 0.428 0.155 0.083 0.211 0.224 0.550 0.804 0.496 0.577 0.530 0.337 0.310 0.701 3.630 3.878 0.662 nan 0.667 0.603 0.306 0.197 1.148 0.040 0.927 0.077 0.051 0.190 0.334 0.221 5056 chr21 10449818 10456867 + 0 NA Intergenic Intergenic -484748 NR_038328 100132288 Hs.487562 NM_174948 ENSG00000188681 TEKT4P2 MAFIPL|TEKT4P tektin 4 pseudogene 2 pseudo 1.016 1.061 nan 0.125 0.328 0.136 0.233 0.140 0.161 0.044 0.232 0.034 0.250 0.079 0.214 0.529 0.387 9.298 4.998 0.357 0.412 0.170 0.059 0.394 0.249 0.287 0.436 0.074 0.110 0.694 0.201 0.325 0.660 0.115 0.135 0.321 0.688 0.289 0.425 0.016 0.077 0.040 0.116 0.233 0.034 0.028 0.113 0.085 5356 chr3 35710312 35725453 + 0 NA intron (NM_016300, intron 1 of 19) intron (NM_016300, intron 1 of 19) -3231 NM_001267618 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 0.894 0.931 0.627 0.087 0.073 0.053 0.110 0.128 0.106 0.063 0.125 0.016 0.253 0.036 0.110 0.441 0.351 0.342 0.181 0.284 0.362 0.059 0.071 0.158 0.127 2.701 nan 0.241 0.236 2.977 2.109 0.178 0.214 0.025 0.040 0.315 0.886 0.347 0.304 0.048 0.076 0.012 0.084 0.110 0.016 0.096 0.174 0.045 0.171 5088 chr21 30627099 30636022 + 0 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -39556 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 0.996 0.821 4.273 1.079 0.569 0.271 0.073 0.243 0.036 0.473 0.287 0.272 0.687 0.072 0.101 0.346 0.379 0.222 0.460 2.104 2.144 0.186 0.101 0.199 0.294 1.276 2.032 0.324 0.261 1.180 0.544 0.143 0.258 1.605 2.312 0.514 1.326 nan 2.449 0.037 0.090 0.525 0.026 0.073 0.272 0.120 0.092 0.055 0.207 5233 chr22 29187491 29198817 + 0 NA exon (NM_005080, exon 3 of 5) exon (NM_005080, exon 3 of 5) 3406 NM_001079539 7494 Hs.437638 NM_005080 ENSG00000100219 XBP1 TREB-5|TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding nan 1.945 2.369 1.949 4.638 2.483 1.396 2.508 0.257 1.521 0.798 2.099 3.624 2.048 0.109 1.621 2.115 2.069 nan 1.819 1.430 4.419 2.590 10.402 10.545 3.003 nan 5.526 7.266 1.896 2.592 2.287 3.292 5.377 6.847 4.203 nan 4.043 1.931 1.459 1.792 0.792 1.195 1.396 2.099 0.506 2.860 0.810 0.993 4667 chr2 201979201 201996443 + 0 NA intron (NM_001127183, intron 1 of 9) intron (NM_001127183, intron 1 of 9) 4553 NM_001127183 8837 Hs.390736 NM_003879 ENSG00000003402 CFLAR CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS CASP8 and FADD like apoptosis regulator protein-coding 3.389 nan 4.087 1.669 1.583 0.873 1.014 2.131 0.298 0.652 0.413 1.729 4.746 2.216 0.120 1.559 2.146 5.723 12.878 1.854 1.714 1.810 0.593 5.202 5.493 2.368 3.160 2.544 3.421 0.483 0.221 1.952 2.797 1.350 1.279 0.479 1.025 1.112 0.744 2.093 0.981 0.254 1.516 1.014 1.729 0.131 0.771 0.905 0.266 1091 chr10 32034775 32050534 + 0 NA Intergenic Intergenic 155200 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 2.002 1.733 2.374 0.473 1.515 0.937 1.104 1.161 0.317 1.544 0.596 1.207 5.434 0.370 0.079 0.722 1.344 0.703 nan 2.886 2.521 3.293 1.069 1.921 1.857 3.327 4.494 0.853 1.609 1.627 1.801 0.459 0.662 2.280 1.988 1.065 1.379 2.502 1.182 2.851 0.681 0.708 1.243 1.104 1.207 0.857 2.142 0.359 0.500 2563 chr14 37209691 37245248 + 0 NA intron (NM_030631, intron 3 of 9) intron (NM_030631, intron 3 of 9) 100696 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 1.294 0.953 1.261 1.171 1.408 0.676 0.510 0.153 0.126 0.236 0.195 0.945 4.158 0.054 0.121 0.233 0.162 0.230 0.346 1.482 1.466 1.337 0.340 0.293 0.314 0.676 1.017 2.627 2.225 0.651 0.294 0.251 0.373 1.638 2.386 0.167 0.271 0.772 0.543 9.692 2.195 0.558 0.180 0.510 0.945 0.120 0.605 0.190 0.191 6517 chr5 154127118 154139705 + 0 NA intron (NM_015315, intron 1 of 18) intron (NM_015315, intron 1 of 18) 40949 NM_015315 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 2.995 nan 2.390 1.265 2.488 1.274 1.646 1.963 0.214 1.234 0.625 2.614 4.196 2.893 0.139 1.949 1.949 2.579 3.775 2.233 2.213 2.692 1.067 3.979 3.607 2.325 3.011 2.109 2.849 6.563 7.850 2.467 4.620 3.974 3.412 3.497 3.308 1.161 0.650 0.949 2.664 1.091 1.855 1.646 2.614 0.856 1.644 1.445 1.836 1602 chr11 101979565 101986036 + 0 NA promoter-TSS (NM_001195045) promoter-TSS (NM_001195045) -371 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 0.629 0.770 2.005 0.175 0.160 0.174 0.612 2.343 0.176 0.071 0.142 0.222 5.302 10.869 0.222 0.271 0.133 2.552 6.080 0.709 0.571 0.158 0.092 1.121 1.143 0.152 0.256 0.215 0.263 0.361 0.060 0.275 0.596 0.079 0.069 0.106 0.130 0.180 0.289 0.035 0.061 0.036 0.612 0.222 0.015 0.006 0.092 0.152 4226 chr2 15727636 15751220 + 0 NA intron (NM_004939, intron 5 of 25) AluSx|SINE|Alu 7683 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 1.334 1.034 1.415 0.772 0.489 0.333 0.600 0.357 0.163 0.509 0.338 0.549 1.654 0.649 0.130 1.227 1.243 0.917 1.282 1.483 1.459 1.248 0.579 1.046 1.065 0.974 1.235 1.489 nan 1.895 1.822 16.681 20.236 0.423 0.379 1.489 nan 0.902 0.472 0.431 0.839 0.040 0.317 0.600 0.549 0.348 0.715 8.570 0.515 5139 chr21 43428758 43443118 + 0 NA intron (NR_119384, intron 1 of 1) intron (NR_119384, intron 1 of 1) -5442 NM_001320729 49854 Hs.434947 NM_020727 ENSG00000173276 ZBTB21 ZNF295 zinc finger and BTB domain containing 21 protein-coding nan 2.501 6.870 2.078 1.749 0.837 1.900 0.918 0.134 1.079 0.561 2.498 10.428 0.680 0.085 2.992 4.408 1.838 3.075 2.999 2.646 nan 1.559 4.224 4.335 1.779 nan 3.555 5.544 2.740 3.565 1.960 3.301 4.140 4.300 2.225 2.371 2.667 1.790 2.860 4.376 1.124 0.858 1.900 2.498 0.964 1.176 1.263 0.825 5341 chr3 21429636 21436819 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity -13991 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 0.555 0.500 0.502 0.258 0.111 0.067 0.036 0.603 0.159 0.066 0.109 0.013 0.115 0.016 0.083 0.181 0.113 4.314 12.082 0.186 0.121 0.071 0.008 0.094 0.073 0.297 0.336 0.376 0.302 nan 0.130 0.034 0.202 0.064 0.022 0.087 0.180 0.051 0.111 0.008 0.087 0.026 0.036 0.013 0.169 0.014 1399 chr11 45115956 45124852 + 0 NA intron (NR_046338, intron 2 of 7) L2c|LINE|L2 4840 NR_046338 56981 Hs.178715 NM_020229 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding nan 1.190 0.833 0.207 0.791 0.377 0.816 0.118 0.036 0.309 0.207 0.210 0.922 0.075 0.134 0.870 1.450 0.240 0.243 0.768 0.795 1.797 0.432 0.083 0.174 1.495 1.864 0.177 0.211 2.304 1.762 0.447 0.384 0.211 0.279 0.300 nan 1.776 0.936 0.443 0.289 0.054 0.027 0.816 0.210 2.427 0.099 0.078 0.055 3393 chr17 38218216 38233477 + 0 NA intron (NM_199334, intron 1 of 8) intron (NM_199334, intron 1 of 8) 6778 NM_001190918 7067 Hs.724 NM_003250 ENSG00000126351 THRA AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|c-ERBA-1 thyroid hormone receptor, alpha protein-coding nan 3.184 1.372 1.402 3.163 1.598 4.170 2.686 0.366 1.943 1.148 2.849 3.989 1.379 0.089 3.048 5.039 1.116 1.444 nan 3.158 1.462 0.490 1.772 1.845 2.019 2.601 5.240 4.749 nan 2.667 1.383 2.574 1.622 1.334 1.353 2.690 2.023 1.095 4.056 2.309 0.560 0.255 4.170 2.849 1.468 1.401 2.010 1.294 1219 chr10 115711079 115723532 + 0 NA Intergenic L1MB2|LINE|L1 -86501 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 0.676 nan 0.623 0.838 3.815 2.008 0.332 0.162 0.051 2.286 0.649 0.317 2.198 0.052 0.064 0.416 0.332 0.937 2.634 0.105 0.133 8.337 6.126 0.257 0.271 0.223 0.388 9.143 12.838 0.161 0.047 2.354 3.516 3.868 3.548 0.198 0.244 2.621 1.573 1.035 2.180 0.525 0.135 0.332 0.317 0.016 0.882 2.589 0.200 5500 chr3 119050130 119065687 + 0 NA intron (NM_020754, intron 1 of 11) intron (NM_020754, intron 1 of 11) -16301 NR_046748 100874246 Hs.607097 NR_046748 ENSG00000241155 ARHGAP31-AS1 - ARHGAP31 antisense RNA 1 ncRNA 0.855 nan 0.642 0.169 0.370 0.228 0.154 0.356 0.113 0.132 0.079 0.082 0.243 0.035 0.081 0.388 0.310 0.230 0.291 0.317 nan 0.189 0.120 0.331 0.268 nan 1.376 0.190 0.219 0.514 0.280 0.106 0.144 0.032 0.064 0.281 0.491 2.675 1.288 0.032 0.085 0.082 0.154 0.082 0.024 0.019 0.006 0.104 6343 chr5 81138094 81155955 + 0 NA Intergenic Intergenic -99952 NM_001345886 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 1.507 2.532 1.146 1.440 0.990 0.440 1.992 1.151 0.128 0.806 0.437 1.010 4.399 1.141 0.159 0.523 0.760 0.963 1.822 0.946 1.137 1.864 0.643 1.310 1.374 3.936 4.975 2.909 4.735 2.627 2.542 0.590 1.120 1.652 1.169 0.614 nan 1.016 0.621 1.073 1.985 0.502 0.855 1.992 1.010 0.207 0.926 1.270 0.278 5168 chr21 46115160 46134272 + 0 NA intron (NM_001272037, intron 1 of 12) intron (NM_001272037, intron 1 of 12) 6779 NM_144991 54084 Hs.660703 NM_144991 ENSG00000175894 TSPEAR C21orf29|DFNB98|TSP-EAR thrombospondin type laminin G domain and EAR repeats protein-coding nan 1.275 2.316 0.658 0.903 0.480 0.478 0.051 0.067 0.922 0.388 1.822 7.626 0.056 0.064 0.291 0.194 0.191 0.583 4.185 4.008 nan 0.501 0.176 0.109 0.112 nan 1.598 3.555 1.024 1.073 0.228 0.212 3.320 1.891 0.122 0.165 4.310 1.918 2.602 4.026 0.549 0.029 0.478 1.822 0.268 0.937 0.005 0.026 7559 chr7 156791723 156816644 + 0 NA promoter-TSS (NM_005515) promoter-TSS (NM_005515) 632 NR_038835 645249 Hs.224879 NR_038835 ENSG00000243479 MNX1-AS1 CCAT5 MNX1 antisense RNA 1 (head to head) ncRNA 0.777 0.878 nan 1.981 4.601 2.431 1.084 0.070 0.158 1.147 0.510 2.023 1.220 0.900 0.130 3.515 5.092 1.112 1.415 2.293 2.148 2.155 0.714 0.110 0.111 0.361 0.730 3.688 4.325 1.171 1.506 4.342 6.051 0.967 0.869 0.127 0.208 1.624 1.011 1.626 1.555 0.160 0.697 1.084 2.023 0.259 0.485 2.700 0.049 6767 chr6 42652196 42694935 + 0 NA intron (NM_000322, intron 1 of 2) AluSc|SINE|Alu 16793 NM_000322 5961 Hs.654489 NM_000322 ENSG00000112619 PRPH2 AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 protein-coding 1.160 0.972 1.114 0.378 0.379 0.227 0.232 0.276 0.125 0.116 0.104 0.278 0.434 0.201 0.133 0.424 0.436 0.290 0.404 0.484 0.532 1.343 0.479 0.492 0.546 0.360 0.632 0.986 nan 1.166 0.829 0.217 0.313 0.180 0.218 1.084 3.677 0.557 0.495 0.170 0.689 0.029 0.089 0.232 0.278 0.052 0.285 0.058 1.749 8257 chr9 123630370 123669382 + 0 NA intron (NM_001286840, intron 1 of 14) MLT2C1|LTR|ERVL 7298 NM_001286840 26147 Hs.460124 NM_015651 ENSG00000119403 PHF19 MTF2L1|PCL3|TDRD19B PHD finger protein 19 protein-coding nan nan 1.426 1.992 1.385 0.694 1.012 0.412 0.165 0.913 0.419 1.558 nan 0.682 0.094 0.718 0.876 0.895 1.167 3.744 3.358 1.043 0.497 1.448 1.505 0.731 nan 4.664 3.925 1.859 1.816 0.410 0.711 1.652 1.888 0.930 2.287 nan 0.845 3.675 1.666 0.525 0.346 1.012 1.558 0.316 1.011 0.267 0.809 7448 chr7 115542221 115552315 + 0 NA Intergenic Intergenic 61099 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding nan 0.558 0.774 0.135 0.246 0.111 0.164 0.180 0.175 0.111 0.285 0.260 0.342 0.053 0.118 0.423 0.287 0.243 0.344 0.145 0.227 0.141 0.110 0.350 0.333 0.666 0.781 0.407 0.342 0.426 0.146 0.173 0.269 3.979 5.976 0.338 0.486 0.459 0.583 0.045 0.139 1.152 0.055 0.164 0.260 0.049 0.101 0.069 0.102 8149 chr9 70645028 70651965 + 0 NA Intergenic TAR1|Satellite|telo -158285 NM_001286836 220869 Hs.355950 NM_001024916 ENSG00000147996 CBWD5 DC36 COBW domain containing 5 protein-coding nan nan nan 4.037 1.416 0.785 2.511 0.671 0.158 1.958 1.237 2.243 4.392 1.087 0.056 3.622 4.017 1.975 nan 4.035 nan 6.184 2.197 10.710 10.975 2.284 2.525 2.012 2.993 2.653 3.059 3.195 5.902 4.098 3.545 2.653 2.911 2.391 1.483 0.554 1.677 1.413 2.260 2.511 2.243 2.919 4.804 2.299 1.365 6230 chr5 34230873 34266096 + 0 NA Intergenic Intergenic -123851 NR_037951 100534612 Hs.171929 NR_037951 ENSG00000273294 C1QTNF3-AMACR - C1QTNF3-AMACR readthrough (NMD candidate) ncRNA 1.109 2.479 nan 2.986 1.120 0.548 0.941 1.077 0.205 2.256 1.586 2.394 9.067 0.395 0.165 1.217 1.132 1.351 2.311 3.221 3.076 3.722 1.791 1.837 1.871 5.652 5.693 2.448 3.725 5.148 4.140 0.646 1.419 3.550 4.682 0.668 0.993 2.771 1.315 0.594 1.205 2.127 1.126 0.941 2.394 0.756 1.243 0.912 0.319 707 chr1 182807310 182812469 + 0 NA intron (NR_033302, intron 1 of 28) MIRb|SINE|MIR 1450 NR_033302 1660 Hs.191518 NM_001357 ENSG00000135829 DHX9 DDX9|LKP|NDH2|NDHII|RHA DExH-box helicase 9 protein-coding nan 4.388 5.194 3.222 4.685 2.423 3.283 2.275 0.560 3.036 1.575 3.761 7.830 3.462 0.189 7.619 6.685 8.649 12.112 8.724 nan 7.730 3.774 nan 11.602 4.125 5.581 5.831 9.378 6.830 7.078 7.857 12.777 7.625 10.011 7.819 8.419 3.685 2.066 2.646 4.173 1.759 2.697 3.283 3.761 0.716 1.552 3.578 2.591 261 chr1 42792635 42811991 + 0 NA promoter-TSS (NM_001198850) promoter-TSS (NM_001198850) -765 NM_001198850 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 19.941 3.672 nan 5.896 6.993 3.401 1.838 0.771 0.167 4.244 2.020 11.308 9.114 0.964 0.134 0.887 1.045 1.151 1.787 6.202 6.914 5.777 2.219 2.379 2.373 2.448 nan nan 11.039 2.725 2.472 1.762 nan 3.043 3.785 4.032 9.031 3.977 1.736 6.337 3.603 1.180 0.962 1.838 11.308 0.387 2.433 0.917 3.914 4685 chr2 207985563 208033501 + 0 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) -10671 NM_001270944 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 2.251 nan 1.559 0.856 4.609 2.427 2.238 1.161 0.141 1.437 0.934 1.566 3.995 0.841 0.085 1.520 2.006 1.091 1.547 1.393 1.314 1.363 0.892 3.197 3.278 3.464 4.340 1.329 1.654 2.656 2.717 0.661 1.452 3.287 3.484 2.229 3.541 0.725 0.392 2.054 1.055 0.979 0.474 2.238 1.566 1.018 0.555 0.265 1.010 2896 chr15 60281213 60301541 + 0 NA Intergenic Intergenic -5044 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 0.674 1.291 nan 1.676 0.494 0.292 1.938 0.089 0.110 0.185 0.114 0.082 9.329 0.080 0.079 0.244 0.127 0.172 0.304 0.653 0.604 nan 0.775 0.078 0.097 0.175 0.311 2.496 5.404 0.649 0.326 0.147 0.166 1.335 1.857 0.212 0.397 1.334 0.770 4.587 0.875 0.278 0.047 1.938 0.082 0.028 0.181 0.014 0.012 4884 chr20 21485893 21518698 + 0 NA Intergenic CpG -7631 NM_002509 4821 Hs.516922 NM_002509 ENSG00000125820 NKX2-2 NKX2.2|NKX2B NK2 homeobox 2 protein-coding 1.253 0.849 nan 0.177 3.936 2.099 0.160 0.113 0.074 0.913 0.453 1.948 1.017 0.062 0.066 0.702 0.951 0.496 0.668 7.188 7.137 3.944 1.288 0.284 0.233 0.669 1.020 0.292 0.774 2.668 2.575 0.183 0.267 1.461 1.834 0.189 0.274 2.559 1.094 0.049 0.073 0.350 0.266 0.160 1.948 0.857 2.227 0.027 0.079 3407 chr17 40393010 40401767 + 0 NA intron (NM_012448, intron 1 of 18) AluSc|SINE|Alu 31036 NM_012448 6777 Hs.595276 NM_012448 ENSG00000173757 STAT5B STAT5 signal transducer and activator of transcription 5B protein-coding 1.281 1.296 nan 0.200 0.598 0.237 0.359 0.190 0.177 0.611 0.337 0.254 0.487 0.091 0.086 0.347 0.436 0.262 0.359 0.381 nan 0.445 0.185 0.452 0.651 1.215 1.750 0.735 nan 7.342 7.487 0.196 0.348 0.202 0.322 2.325 4.646 1.250 0.755 0.168 0.485 0.077 0.036 0.359 0.254 0.944 0.987 0.079 3.104 531 chr1 150576899 150589100 + 0 NA Intergenic AluSx1|SINE|Alu 18610 NM_207045 2029 Hs.632456 NM_004436 ENSG00000143420 ENSA ARPP-19e endosulfine alpha protein-coding nan nan 1.559 0.934 1.183 0.660 2.449 0.912 0.357 2.434 0.814 0.511 1.319 0.102 0.163 0.532 0.543 1.057 2.436 0.649 nan 2.556 0.786 0.578 0.640 0.742 0.911 1.480 1.245 0.332 0.185 0.550 0.765 1.215 2.302 0.438 1.155 1.863 0.922 0.074 0.329 0.229 0.233 2.449 0.511 0.040 5.550 0.136 0.350 2111 chr12 104070739 104083111 + 0 NA intron (NM_017564, intron 25 of 68) intron (NM_017564, intron 25 of 68) 95856 NM_017564 55576 Hs.408249 NM_017564 ENSG00000136011 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1 stabilin 2 protein-coding 0.722 1.184 nan 0.612 0.376 0.169 0.258 0.109 0.130 0.828 0.307 0.803 1.068 0.053 0.100 0.322 0.187 0.219 0.250 0.701 0.741 1.836 0.888 0.228 0.304 3.441 3.352 2.423 2.659 0.634 0.461 0.102 0.214 0.269 0.205 0.270 0.491 2.590 1.572 0.797 0.279 0.045 0.053 0.258 0.803 0.103 0.041 0.048 0.245 721 chr1 185269504 185292230 + 0 NA intron (NM_006469, intron 1 of 14) L2c|LINE|L2 5594 NM_006469 10625 Hs.497183 NM_006469 ENSG00000116679 IVNS1ABP FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding nan nan 1.876 1.979 2.130 1.206 1.827 1.366 0.250 1.452 0.741 1.824 3.363 1.349 0.146 2.658 3.340 5.652 9.164 4.547 nan 2.523 1.286 nan 5.258 1.908 2.356 2.772 4.041 2.252 2.361 3.152 5.556 1.956 1.638 2.120 nan 1.574 1.039 1.078 2.509 0.410 1.204 1.827 1.824 0.475 0.810 1.563 0.671 1897 chr12 31224483 31234447 + 0 NA intron (NM_152438, intron 1 of 26) MIRb|SINE|MIR -2684 NR_038927 100506660 Hs.586774 NR_038927 ENSG00000245614 DDX11-AS1 CONCR DDX11 antisense RNA 1 ncRNA 2.870 nan 3.682 4.888 2.574 1.209 2.288 0.912 0.033 1.739 1.150 2.672 5.365 1.555 0.101 3.179 2.958 3.005 4.326 7.747 7.128 5.487 3.192 6.340 7.147 2.325 2.932 3.905 6.207 3.038 3.316 1.659 3.083 9.534 11.768 2.505 3.127 2.338 1.328 3.321 2.665 3.737 1.617 2.288 2.672 0.652 2.744 1.240 1.111 8412 chrX 135396679 135411935 + 0 NA intron (NM_153834, intron 4 of 25) intron (NM_153834, intron 4 of 25) 21185 NM_153834 139378 Hs.381354 NM_153834 ENSG00000156920 ADGRG4 GPR112|PGR17|RP1-299I16 adhesion G protein-coupled receptor G4 protein-coding 1.140 0.702 0.783 0.084 0.675 0.390 0.184 0.067 0.042 0.083 0.122 0.070 0.247 0.007 0.051 0.221 0.239 0.176 0.209 0.168 0.175 0.925 0.286 0.114 0.151 3.940 4.527 0.103 0.127 2.543 2.334 0.099 0.166 0.600 0.672 0.286 0.853 0.465 0.367 0.039 0.047 0.105 0.032 0.184 0.070 0.312 0.020 0.054 0.364 6356 chr5 88165204 88180613 + 0 NA intron (NM_001193347, intron 2 of 11) UCON20|Unknown|Unknown -6239 NR_136218 101929423 Hs.130138 NR_104031 ENSG00000248309 MEF2C-AS1 - MEF2C antisense RNA 1 ncRNA 0.618 1.022 0.468 0.289 0.333 0.269 0.049 0.981 0.084 0.529 0.396 0.124 2.426 0.278 0.113 0.301 0.231 0.529 0.891 0.691 0.474 0.958 0.322 2.283 2.442 3.028 3.604 0.455 0.516 0.789 0.688 0.532 1.246 0.345 0.245 0.257 nan 0.819 0.463 0.021 0.276 0.031 0.049 0.124 1.105 1.227 0.129 5721 chr3 181324158 181369386 + 0 NA intron (NR_075090, intron 2 of 2) MIRb|SINE|MIR 18650 NR_004053 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 0.828 1.159 0.657 0.210 0.607 0.259 0.195 0.114 0.175 0.388 0.323 0.166 0.468 3.340 0.128 0.262 0.193 0.152 0.296 0.521 0.632 3.298 1.543 0.169 0.132 0.198 0.378 0.526 0.577 0.778 0.336 0.100 0.152 0.196 0.222 0.146 0.249 0.656 0.575 0.027 0.102 0.033 0.244 0.195 0.166 0.013 0.016 0.044 0.070 6288 chr5 59730014 59749596 + 0 NA intron (NM_001165899, intron 1 of 16) intron (NM_001165899, intron 1 of 16) -43735 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 (non-protein coding) ncRNA nan nan 0.684 0.041 0.244 0.074 0.125 0.118 0.058 0.048 0.085 0.024 0.324 0.055 0.145 0.225 0.096 0.232 0.242 0.192 0.247 nan 0.101 0.126 0.103 4.844 5.280 0.285 0.301 nan 0.265 0.077 0.142 0.073 0.104 0.165 0.395 0.133 0.259 1.312 0.081 0.005 0.307 0.125 0.024 0.020 0.476 0.025 0.101 1095 chr10 34806423 34819449 + 0 NA intron (NM_001184785, intron 2 of 24) intron (NM_001184785, intron 2 of 24) 291317 NM_001184791 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.763 1.322 0.781 0.048 2.840 1.709 0.265 4.721 0.250 0.507 0.337 0.477 0.274 0.208 0.078 0.428 0.332 1.949 nan 0.415 0.473 4.562 1.282 2.595 2.468 0.461 0.914 0.692 0.959 0.204 0.120 0.256 0.478 0.582 1.077 0.304 0.601 0.536 0.356 0.085 0.080 0.109 0.104 0.265 0.477 0.296 0.235 0.124 3977 chr19 13259382 13285339 + 0 NA Intergenic AluSg|SINE|Alu 11078 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 6.035 3.856 4.048 2.412 4.521 2.166 2.279 3.265 0.828 1.583 0.776 3.676 2.531 4.264 0.146 4.105 4.536 2.999 5.759 2.988 2.585 7.209 3.637 4.532 4.796 2.190 2.752 6.224 7.128 4.887 4.668 1.654 3.308 5.255 4.525 3.992 7.110 2.765 1.669 5.147 1.892 1.171 1.621 2.279 3.676 1.165 2.627 2.049 2.216 6623 chr6 15087090 15092240 + 0 NA Intergenic Intergenic -156541 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 1.956 nan 2.867 0.441 0.660 0.341 0.435 0.160 0.156 0.091 0.142 0.812 0.274 0.022 0.083 0.506 0.268 0.287 0.693 0.879 0.917 1.364 0.393 0.363 0.355 0.699 1.027 8.047 7.129 0.719 0.539 0.174 0.568 2.722 2.292 0.599 1.996 1.523 1.004 3.752 4.088 0.517 6.029 0.435 0.812 0.076 0.059 0.172 0.311 30 chr1 2456386 2481270 + 0 NA Intergenic Intergenic -7144 NM_001010926 388585 Hs.57971 NM_001010926 ENSG00000197921 HES5 bHLHb38 hes family bHLH transcription factor 5 protein-coding 1.817 nan 1.756 1.704 0.988 0.575 0.617 0.467 0.169 0.619 0.248 0.525 4.393 1.046 0.087 1.565 2.717 0.782 1.060 2.208 1.745 1.645 0.495 1.276 1.348 0.854 nan nan 5.309 nan 1.011 0.854 1.043 1.172 1.017 1.046 1.626 0.575 0.419 5.634 1.737 0.277 1.718 0.617 0.525 0.687 0.699 0.598 0.412 3038 chr16 4343330 4378837 + 0 NA Intergenic Intergenic -3679 NM_001318918 84662 Hs.592087 NM_032575 ENSG00000126603 GLIS2 NKL|NPHP7 GLIS family zinc finger 2 protein-coding 1.234 nan 1.994 1.122 1.122 0.678 0.980 0.721 0.340 0.309 0.252 1.599 2.621 2.052 0.083 1.031 1.997 0.320 0.598 2.014 1.789 nan 0.651 1.969 1.835 0.532 nan 1.432 2.214 1.056 0.855 0.536 1.079 0.406 0.412 0.843 1.395 1.020 0.581 1.659 1.055 0.092 0.338 0.980 1.599 0.120 0.431 0.505 0.359 618 chr1 161733846 161737101 + 0 NA promoter-TSS (NM_007348) promoter-TSS (NM_007348) -561 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 5.738 4.163 4.546 4.353 3.243 1.226 1.214 5.387 0.348 3.079 1.668 3.173 6.825 6.143 0.341 4.548 6.243 9.153 12.338 4.910 nan 4.348 1.652 13.177 13.715 5.181 5.803 8.413 nan 7.328 6.467 18.086 12.219 5.669 8.756 6.108 8.892 3.991 2.297 0.956 6.236 0.873 2.690 1.214 3.173 1.010 3.534 6.697 1.936 5758 chr3 187454104 187469788 + 0 NA intron (NM_001706, intron 1 of 9) intron (NM_001706, intron 1 of 9) 1567 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 2.166 4.320 2.113 2.567 3.284 1.319 1.164 3.988 0.310 0.642 0.432 1.933 11.329 2.363 0.126 0.626 0.589 3.484 7.171 6.066 4.846 0.622 0.328 3.765 4.117 2.325 3.235 5.269 8.431 2.780 2.306 0.919 1.367 0.330 0.441 0.288 0.435 1.891 1.189 5.123 1.147 0.043 0.804 1.164 1.933 0.201 1.329 0.163 0.150 2662 chr14 69817289 69829838 + 0 NA Intergenic AluY|SINE|Alu 41458 NM_004450 2079 Hs.509791 NM_004450 ENSG00000100632 ERH DROER enhancer of rudimentary homolog (Drosophila) protein-coding 1.387 0.615 0.727 0.144 0.298 0.158 0.280 0.197 0.064 0.049 0.080 0.167 0.457 0.043 0.102 0.490 0.411 0.293 0.444 0.501 0.519 0.317 0.207 0.536 0.528 0.431 0.765 2.293 nan 0.832 0.738 0.375 0.406 0.099 0.159 0.182 0.276 0.829 nan 11.295 1.968 0.015 0.151 0.280 0.167 0.116 0.161 0.055 0.059 7332 chr7 75920335 75949370 + 0 NA Intergenic AluSq2|SINE|Alu 2977 NM_001540 3315 Hs.520973 NM_001540 ENSG00000106211 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock protein family B (small) member 1 protein-coding nan 1.766 2.092 1.435 2.340 1.182 1.532 1.649 0.772 1.483 1.023 1.446 3.849 2.344 0.186 0.918 1.435 1.275 nan 2.226 2.229 3.773 1.251 0.371 0.360 1.059 nan 2.114 nan 2.417 2.028 1.105 1.874 2.051 2.004 1.864 3.416 2.896 1.363 1.941 2.678 0.501 0.890 1.532 1.446 0.593 1.148 0.345 0.545 5849 chr4 24583864 24586893 + 0 NA intron (NM_001358, intron 1 of 13) intron (NM_001358, intron 1 of 13) 806 NM_001358 1665 Hs.696074 NM_001358 ENSG00000109606 DHX15 DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p DEAH-box helicase 15 protein-coding 7.593 3.756 5.744 11.022 9.586 5.194 7.510 4.563 0.371 5.610 2.154 6.425 10.207 4.374 0.109 10.503 8.658 13.638 15.452 9.748 8.595 11.637 6.659 21.316 20.896 6.091 7.248 9.722 15.698 14.134 16.111 3.724 9.886 7.383 8.160 9.255 7.220 nan 4.071 3.831 7.292 0.979 5.744 7.510 6.425 1.823 2.913 2.680 3.079 71 chr1 9870707 9936068 + 0 NA Intergenic Intergenic -18803 NM_014944 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 1.937 nan 1.683 2.184 0.683 0.324 0.777 0.253 0.187 0.461 0.230 0.521 3.757 0.271 0.115 0.835 1.200 0.521 0.791 1.533 1.532 0.498 0.161 0.621 0.629 2.401 nan nan 3.922 nan 2.106 0.403 0.562 0.460 0.424 1.726 3.882 1.607 0.876 2.189 0.447 0.125 0.190 0.777 0.521 0.715 0.451 0.134 0.901 8379 chrX 39941064 39970013 + 0 NA intron (NM_001123384, intron 1 of 13) CpG 1181 NM_017745 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 4.068 3.311 2.917 3.824 3.020 1.640 2.591 1.735 0.233 1.857 0.735 3.362 6.161 1.371 0.052 2.232 2.697 2.241 3.783 6.549 5.479 2.433 0.868 2.996 2.779 1.792 2.439 3.334 4.638 3.816 5.054 2.070 3.247 2.151 1.910 1.821 3.046 1.119 0.742 2.634 1.684 0.873 3.122 2.591 3.362 0.848 1.482 1.696 1.675 6787 chr6 45515203 45547430 + 0 NA Intergenic Intergenic 141002 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 1.507 0.869 0.798 0.206 0.334 0.154 0.195 0.615 0.141 0.063 0.107 0.171 0.327 0.057 0.111 0.987 0.787 1.758 6.396 0.337 0.294 0.114 0.060 0.625 0.649 0.121 0.216 0.862 nan 0.384 0.209 0.354 0.503 0.095 0.106 0.481 1.405 0.541 0.585 0.160 0.102 0.020 0.104 0.195 0.171 0.018 0.081 0.209 0.337 5171 chr21 46540933 46548945 + 0 NA intron (NM_001346688, intron 1 of 11) AluJb|SINE|Alu -27506 NM_001346687 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase, RNA specific B1 protein-coding nan 0.950 1.734 0.343 0.345 0.160 2.295 0.161 0.160 0.019 0.095 0.045 1.943 0.028 0.061 0.650 0.675 0.313 0.576 0.736 0.977 nan 0.075 0.382 0.391 0.355 nan 0.163 0.155 10.634 8.485 0.399 0.674 3.062 3.909 4.041 8.043 1.112 0.880 0.063 9.076 0.712 0.137 2.295 0.045 3.009 0.431 0.177 3.405 7665 chr8 48647201 48652009 + 0 NA 3' UTR (NM_005195, exon 1 of 1) 3' UTR (NM_005195, exon 1 of 1) 1121 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 5.334 5.210 3.713 8.426 5.622 3.170 3.316 4.537 0.369 2.832 1.203 10.287 10.357 5.421 0.142 0.821 0.767 7.185 12.113 15.777 13.222 5.311 1.641 7.336 7.019 1.698 2.542 7.860 15.187 1.845 1.971 0.712 1.438 7.166 4.267 0.978 1.042 3.616 2.239 6.040 3.548 1.662 5.672 3.316 10.287 0.139 6.625 0.269 0.460 1135 chr10 71805372 71814734 + 0 NA Intergenic MIR|SINE|MIR -2304 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 3.529 nan 4.725 0.271 3.216 1.598 1.211 0.081 0.085 1.332 0.740 3.229 2.693 2.092 0.148 4.787 5.022 9.140 7.660 3.669 3.811 5.053 1.622 2.507 2.678 0.079 0.228 4.599 nan 1.728 1.611 2.469 4.959 1.829 1.108 0.094 nan 1.383 0.974 0.991 0.797 0.164 1.164 1.211 3.229 0.426 0.044 1.482 0.028 6726 chr6 34190848 34217971 + 0 NA promoter-TSS (NM_145903) promoter-TSS (NM_145903) -168 NM_001319079 3159 Hs.518805 NM_002131 ENSG00000137309 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding nan 1.585 nan 1.678 1.691 0.839 2.840 0.939 0.172 1.206 0.534 2.274 3.074 3.137 0.135 2.333 2.643 1.717 nan nan 2.298 2.588 0.895 3.201 3.309 1.690 2.541 6.268 9.138 2.996 3.377 1.336 2.203 2.221 2.304 2.844 3.187 1.464 0.793 0.694 1.047 0.481 0.948 2.840 2.274 0.575 0.957 0.730 1.325 1396 chr11 44872270 44892598 + 0 NA intron (NM_130783, intron 2 of 8) intron (NM_130783, intron 2 of 8) 89325 NM_001318384 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding nan 0.798 1.955 0.052 0.304 0.150 0.278 0.229 0.103 0.186 0.199 0.070 0.558 0.107 0.092 1.730 3.704 0.316 0.725 0.652 0.620 0.318 0.130 0.146 0.115 1.079 1.850 0.057 0.147 1.224 1.086 0.519 0.739 0.194 0.350 0.469 nan 1.014 0.718 0.603 0.034 0.066 0.035 0.278 0.070 0.517 0.045 0.117 0.201 1375 chr11 33881691 33900037 + 0 NA intron (NM_001142315, intron 2 of 3) CpG 507 NM_001142316 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 1.113 1.230 nan 0.354 1.094 0.620 0.708 0.429 0.114 1.408 0.595 0.255 2.559 0.094 0.092 2.271 3.501 1.707 0.989 0.865 0.978 0.268 0.112 0.441 0.368 1.469 2.131 0.376 0.448 0.580 0.441 4.023 5.411 0.403 0.321 0.275 nan 2.751 1.534 2.728 0.536 0.212 0.514 0.708 0.255 0.656 0.039 2.298 0.087 8090 chr9 22330682 22346699 + 0 NA Intergenic Intergenic -108150 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 0.970 nan nan 0.220 0.157 0.110 0.184 0.544 0.101 0.138 0.122 0.082 0.266 0.013 0.105 0.168 0.104 0.192 0.342 0.281 0.347 0.636 0.216 0.064 0.050 3.991 4.934 0.109 0.133 1.183 0.710 0.159 0.239 1.271 2.255 0.256 0.573 1.313 0.842 0.018 0.062 0.457 0.085 0.184 0.082 0.056 0.031 0.146 8273 chr9 128506242 128527260 + 0 NA intron (NR_024123, intron 2 of 6) intron (NR_024123, intron 2 of 6) 6273 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding nan nan 1.547 2.813 2.813 1.479 1.770 0.833 0.154 1.337 1.000 1.887 nan 1.002 0.128 0.172 0.195 0.568 0.760 3.191 2.805 2.588 1.141 0.862 0.834 1.683 nan 2.561 4.018 5.759 4.564 0.162 0.299 3.019 2.791 3.424 4.684 nan 1.071 1.611 2.501 0.829 1.075 1.770 1.887 0.521 1.507 0.043 1.532 4323 chr2 46523364 46543289 + 0 NA intron (NM_001430, intron 1 of 15) intron (NM_001430, intron 1 of 15) 8785 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 0.894 nan 0.974 2.011 1.543 0.830 0.374 1.224 0.274 0.622 0.205 0.300 1.549 0.088 0.090 0.267 0.207 0.491 1.045 nan 0.511 1.262 0.875 0.511 0.513 0.153 0.378 1.566 2.770 0.450 0.289 0.182 0.233 0.068 0.063 0.266 nan nan 0.745 0.037 0.236 0.014 0.043 0.374 0.300 0.082 1.957 0.030 0.055 4661 chr2 200167115 200177852 + 0 NA intron (NM_001172509, intron 10 of 10) intron (NM_001172509, intron 10 of 10) 150336 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 0.900 nan 0.887 1.692 4.464 2.150 1.524 0.136 0.149 0.762 0.545 3.885 1.807 0.082 1.017 0.900 0.283 0.361 8.228 7.764 1.979 0.455 0.408 0.510 1.149 1.445 4.325 5.052 1.173 1.354 0.451 0.694 0.925 1.256 1.076 2.628 1.889 0.935 0.069 1.795 0.265 1.018 1.524 3.885 0.358 1.716 0.425 0.439 3311 chr17 17776334 17796507 + 0 NA intron (NM_001288787, intron 4 of 13) intron (NM_001288787, intron 4 of 13) -46095 NM_004176 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP-1c|SREBP1|SREBP1a|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 1.481 1.335 1.670 0.261 0.518 0.288 0.452 0.430 0.096 0.217 0.134 0.192 1.091 0.060 0.040 0.741 1.748 0.315 nan 0.626 0.759 0.949 0.390 0.266 0.267 0.448 0.845 1.356 1.704 nan 1.398 0.282 0.421 0.297 0.315 0.718 1.359 0.516 0.362 2.826 0.881 0.114 0.780 0.452 0.192 0.240 0.399 0.089 0.683 2958 chr15 75742393 75749092 + 0 NA intron (NM_001145357, intron 1 of 20) CpG-8103 -1655 NM_001145358 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 5.151 4.085 4.654 4.839 5.853 2.785 3.564 4.088 0.429 2.741 0.973 5.255 19.330 5.824 0.107 4.377 4.938 6.607 8.209 5.590 4.235 6.109 2.209 8.640 8.537 3.278 4.476 6.041 10.487 7.222 8.684 1.572 3.476 3.444 3.069 4.832 6.325 1.870 1.068 2.646 3.977 0.910 2.835 3.564 5.255 2.150 3.771 2.498 1.854 7405 chr7 99693552 99700858 + 0 NA intron (NM_005916, intron 3 of 14) intron (NM_005916, intron 3 of 14) 1198 NM_182776 4176 Hs.438720 NM_005916 ENSG00000166508 MCM7 CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146|PPP1R104 minichromosome maintenance complex component 7 protein-coding nan 2.085 nan 5.637 6.214 3.520 3.550 2.055 0.285 3.524 1.251 4.498 8.315 6.072 0.226 7.250 6.225 5.183 7.390 9.394 10.608 5.826 4.648 10.657 10.662 2.606 3.923 6.287 9.845 6.458 6.999 5.242 7.557 6.129 7.177 7.330 nan 4.363 2.088 3.726 4.677 1.722 3.022 3.550 4.498 1.174 1.789 2.302 2.029 8255 chr9 121211482 121223711 + 0 NA Intergenic MIR|SINE|MIR 751143 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding nan nan 0.922 0.287 0.285 0.097 0.137 0.098 0.066 1.253 0.660 0.059 nan 0.014 0.081 0.181 0.141 0.383 0.227 0.290 0.453 0.084 0.079 0.106 0.166 0.310 nan 0.355 0.348 0.611 0.304 0.032 0.108 1.123 0.726 0.263 0.302 nan 1.781 0.018 0.051 0.210 0.469 0.137 0.059 0.107 0.100 0.024 0.126 1580 chr11 93006376 93023189 + 0 NA Intergenic L1MA4A|LINE|L1 -49101 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 0.677 nan 0.591 0.270 0.266 0.096 0.167 0.071 0.048 0.397 0.212 0.334 2.318 0.067 0.105 0.673 0.434 0.222 nan 0.867 0.848 0.183 0.064 0.363 0.480 0.232 0.400 1.014 2.250 0.284 0.147 0.229 0.364 0.933 1.352 0.224 nan 0.717 0.481 4.221 0.391 0.407 0.123 0.167 0.334 0.012 0.265 0.141 0.118 3274 chr17 8802253 8814801 + 0 NA intron (NM_014308, intron 4 of 18) MARNA|DNA|TcMar-Mariner 7307 NM_014308 23533 Hs.278901 NM_014308 ENSG00000141506 PIK3R5 F730038I15Rik|FOAP-2|P101-PI3K|p101 phosphoinositide-3-kinase regulatory subunit 5 protein-coding 0.555 0.435 0.508 0.042 0.186 0.115 0.123 0.048 0.064 0.025 0.032 0.019 0.227 0.122 0.178 1.708 2.307 9.756 2.377 0.179 0.265 0.287 0.138 0.915 1.074 0.099 0.185 0.174 0.214 0.232 0.086 0.463 0.850 0.107 0.060 0.183 0.240 0.179 0.174 0.005 0.043 0.019 0.123 0.019 0.008 0.033 0.242 0.010 5113 chr21 37615653 37635971 + 0 NA intron (NM_005128, intron 22 of 36) AluSx|SINE|Alu -66675 NM_001320445 23515 Hs.421150 NM_015358 ENSG00000159256 MORC3 NXP2|ZCW5|ZCWCC3 MORC family CW-type zinc finger 3 protein-coding 1.092 0.702 1.486 0.095 0.299 0.222 0.240 0.214 0.140 0.131 0.110 0.206 0.620 0.118 0.082 1.937 1.951 2.045 1.274 0.447 0.499 0.313 0.135 7.996 8.476 0.419 0.710 0.471 0.498 1.571 1.100 0.839 1.708 0.163 0.216 0.612 1.249 nan 0.540 0.123 0.231 0.009 0.247 0.240 0.206 0.081 0.090 0.767 0.584 1539 chr11 77953339 77958347 + 0 NA intron (NM_012296, intron 3 of 9) L1M2a|LINE|L1 55985 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding nan 0.873 0.530 0.157 0.421 0.096 0.128 2.142 0.839 0.243 0.192 0.150 0.381 0.152 0.111 8.638 5.869 10.133 4.528 0.573 0.700 0.983 0.389 0.921 1.172 0.806 1.258 0.328 0.355 0.186 0.143 4.825 7.072 0.191 0.170 0.223 0.524 0.546 0.421 0.089 0.123 0.115 0.128 0.150 0.059 0.089 11.376 0.097 6054 chr4 155283527 155290147 + 0 NA intron (NM_017639, intron 5 of 24) AluSg7|SINE|Alu 25612 NM_017639 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding nan 0.587 0.434 0.052 0.260 0.049 0.116 0.045 0.024 0.096 0.149 0.018 0.157 0.043 0.899 0.800 7.410 0.937 0.143 0.141 0.041 0.017 0.353 0.276 0.142 0.174 0.202 0.193 0.256 0.067 3.350 5.793 0.025 0.054 0.094 0.174 0.168 0.209 0.009 0.068 0.179 0.116 0.018 0.014 0.015 3.412 0.113 3727 chr18 31895233 31905416 + 0 NA Intergenic MIRb|SINE|MIR -96809 NM_001198546 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding nan 0.920 0.802 0.530 0.321 0.219 0.828 0.081 0.032 0.549 0.259 0.429 0.662 0.042 0.100 0.474 0.501 0.443 0.509 0.831 1.164 1.906 0.735 0.171 0.112 0.430 0.637 nan 0.778 0.418 0.188 0.236 0.265 2.150 1.874 0.176 0.412 6.109 3.125 0.072 0.210 0.287 0.218 0.828 0.429 0.151 0.160 0.029 0.111 2343 chr13 73628505 73642315 + 0 NA intron (NM_001730, intron 1 of 3) intron (NM_001730, intron 1 of 3) 2480 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding nan 6.228 1.559 1.506 1.704 0.977 2.998 1.020 0.046 0.148 0.109 2.142 14.378 3.628 0.098 0.560 0.712 2.277 5.377 1.616 1.459 nan 1.581 0.663 0.713 0.216 0.284 2.361 3.455 nan 0.597 1.761 3.960 1.086 1.086 0.508 nan 0.400 0.235 1.159 5.109 0.138 3.475 2.998 2.142 0.055 0.383 1.533 0.126 1442 chr11 61558464 61563764 + 0 NA intron (NM_004111, intron 1 of 1) (TTAA)n|Simple_repeat|Simple_repeat 1005 NM_004111 2237 Hs.409065 NM_004111 ENSG00000168496 FEN1 FEN-1|MF1|RAD2 flap structure-specific endonuclease 1 protein-coding nan 5.377 3.535 8.158 6.720 3.968 5.699 3.129 0.334 2.913 1.582 5.918 12.828 4.374 0.169 13.234 9.110 10.675 14.745 17.051 17.370 10.845 8.519 17.507 19.792 8.650 10.137 10.069 16.054 10.204 10.040 9.321 13.059 8.780 13.955 8.010 7.198 4.110 2.134 5.663 4.098 2.301 2.053 5.699 5.918 1.839 3.050 2.523 2.052 7422 chr7 105681053 105719089 + 0 NA Intergenic L1M5|LINE|L1 52720 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding nan 1.081 1.633 0.159 0.670 0.299 0.454 0.636 0.160 0.292 0.226 0.438 2.500 0.117 0.170 0.376 0.422 0.509 0.734 0.660 0.769 1.643 0.451 0.218 0.209 2.990 3.572 0.493 0.671 1.459 1.830 0.397 0.704 3.462 2.950 0.507 nan 1.076 0.886 1.506 0.685 0.854 0.227 0.454 0.438 0.703 0.080 0.228 0.135 1383 chr11 34804940 34820665 + 0 NA Intergenic L2a|LINE|L2 -124875 NM_001135024 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 0.595 2.283 nan 0.201 1.223 0.592 0.162 0.143 0.130 0.776 0.342 2.267 1.059 0.014 0.122 0.560 0.525 0.837 0.812 0.598 0.640 6.722 2.587 0.582 0.542 0.202 0.429 0.607 0.527 0.299 0.128 0.207 0.455 1.645 2.329 0.084 nan 1.373 0.867 0.106 0.120 0.658 0.560 0.162 2.267 0.043 0.032 0.075 0.087 1414 chr11 47535256 47548220 + 0 NA intron (NM_001330272, intron 1 of 15) intron (NM_001330272, intron 1 of 15) 3802 NM_001172639 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP, Elav-like family member 1 protein-coding nan 1.673 1.013 0.326 0.709 0.298 0.585 0.707 0.180 0.511 0.334 0.338 0.669 0.266 0.116 0.672 1.079 0.405 0.707 1.147 1.365 0.939 0.343 0.930 1.026 4.520 5.482 0.340 0.751 1.904 1.599 0.443 0.738 0.922 1.454 0.643 nan 0.980 0.673 0.181 0.296 0.264 0.141 0.585 0.338 0.606 0.094 0.183 0.229 8059 chr9 14073980 14113259 + 0 NA intron (NM_001190738, intron 8 of 8) intron (NM_001190738, intron 8 of 8) 87182 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 1.335 0.566 0.563 0.323 0.467 0.488 0.102 0.454 0.446 0.512 1.668 0.069 0.114 0.209 0.120 2.374 4.086 0.705 0.854 0.929 0.365 0.221 0.157 6.068 7.679 1.417 1.834 0.370 0.181 0.232 0.350 1.209 1.136 0.306 0.799 1.374 0.885 3.903 0.161 0.252 0.156 0.467 0.512 0.015 0.131 0.091 0.063 3287 chr17 15543954 15564403 + 0 NA intron (NM_006470, intron 4 of 8) (CAGAGA)n|Simple_repeat|Simple_repeat -31160 NM_001282540 374286 Hs.548021 NM_006382 ENSG00000241322 CDRT1 C170RF1|C17ORF1|C17ORF1A|FBXW10B|FBXW10P1|HREP|SM25H2 CMT1A duplicated region transcript 1 protein-coding 1.413 1.183 0.991 0.583 0.398 0.258 0.542 0.796 0.157 0.100 0.125 0.269 0.729 0.102 0.064 0.448 0.628 1.750 nan 0.524 0.483 2.512 0.791 1.151 1.121 0.632 0.647 2.666 3.286 nan 0.335 0.240 0.224 0.476 0.974 0.549 1.348 0.994 0.576 0.157 0.123 0.065 0.097 0.542 0.269 0.343 4.270 0.048 0.357 323 chr1 59235215 59253207 + 0 NA Intergenic Intergenic 5574 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 3.243 2.619 5.404 2.852 2.645 1.557 1.777 2.320 0.247 2.608 1.097 5.103 6.979 0.519 0.100 1.311 2.228 2.149 3.401 7.383 5.318 4.514 2.530 4.780 5.074 2.963 3.996 5.409 7.027 1.698 2.458 1.202 1.811 2.405 1.777 1.533 nan 2.771 1.510 1.446 1.369 0.595 2.246 1.777 5.103 0.833 1.564 0.276 0.550 1331 chr11 18000502 18015419 + 0 NA intron (NM_012139, intron 8 of 10) intron (NM_012139, intron 8 of 10) 26749 NM_012139 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 0.701 nan 1.224 5.852 0.409 0.174 0.061 0.130 0.032 0.991 0.408 0.416 0.597 0.036 0.076 nan 1.011 0.339 0.386 1.962 2.277 3.139 1.402 0.225 0.322 0.531 nan 4.745 3.882 0.437 0.238 0.363 0.578 1.587 2.493 0.153 0.507 3.264 nan 0.769 0.180 0.249 0.021 0.061 0.416 0.019 1.084 0.066 0.074 1305 chr11 11861721 11867664 + 0 NA intron (NM_017944, intron 1 of 26) intron (NM_017944, intron 1 of 26) 1722 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 3.368 nan 5.020 5.037 3.369 2.068 2.905 1.128 0.162 2.537 1.298 6.779 10.177 2.460 0.063 nan 11.109 7.056 9.292 9.386 9.229 7.346 3.550 20.022 21.580 5.719 nan 5.699 8.215 6.279 7.217 6.009 11.331 4.948 5.402 4.717 3.647 2.950 nan 2.729 3.549 0.899 1.961 2.905 6.779 0.296 1.299 3.778 1.035 4539 chr2 145251968 145283091 + 0 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -9652 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 1.953 nan 0.901 0.606 2.371 1.072 0.704 2.097 0.181 0.923 0.628 0.566 2.296 0.131 0.059 0.316 0.255 6.663 9.563 2.090 1.405 0.328 0.107 0.233 0.294 3.078 3.524 0.389 0.484 1.697 1.748 0.216 0.467 0.036 0.047 1.728 2.949 0.470 0.345 0.100 0.086 0.015 0.550 0.704 0.566 0.436 0.059 0.181 1.086 5093 chr21 33554478 33571593 + 0 NA Intergenic Intergenic 88341 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 1.264 0.793 4.587 0.199 0.264 0.047 0.554 0.060 0.053 0.064 0.062 0.409 0.663 0.013 0.086 0.766 0.969 0.191 0.280 0.496 0.544 2.214 0.305 0.255 0.217 1.062 1.568 0.500 0.801 5.915 7.301 0.181 0.244 1.398 1.293 1.347 2.589 nan 0.665 0.049 0.093 0.318 0.167 0.554 0.409 0.261 0.024 0.047 0.744 3928 chr19 788067 812123 + 0 NA intron (NM_031991, intron 2 of 13) AluSx1|SINE|Alu 2703 NM_002819 5725 Hs.172550 NM_002819 ENSG00000011304 PTBP1 HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB polypyrimidine tract binding protein 1 protein-coding 1.977 1.345 2.790 1.355 1.568 0.874 1.655 0.782 0.227 0.677 0.457 1.730 2.519 1.117 0.097 1.075 1.136 2.742 4.117 2.291 2.258 0.992 0.536 2.525 2.388 1.051 1.663 1.226 nan 2.593 2.652 0.787 1.493 1.314 1.588 1.253 1.402 1.173 0.660 1.216 1.506 0.467 3.328 1.655 1.730 0.515 1.122 0.478 0.381 4940 chr20 35722683 35725481 + 0 NA intron (NM_183404, intron 1 of 20) CpG 536 NM_001323282 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 9.574 9.524 6.456 11.297 8.726 3.685 6.753 3.419 0.459 3.182 1.733 9.018 18.690 4.633 0.163 15.648 12.266 8.427 11.392 13.013 nan 18.658 15.489 16.169 16.909 7.756 10.622 12.071 20.095 13.839 14.650 9.985 11.395 5.048 6.091 14.055 9.010 3.470 2.360 5.608 4.884 1.561 4.576 6.753 9.018 1.978 3.801 3.611 4.193 7233 chr7 29504031 29526306 + 0 NA intron (NM_001293071, intron 5 of 11) L1MB5|LINE|L1 -4160 NM_001293076 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 1.907 1.188 2.362 0.520 0.776 0.381 0.424 0.114 0.135 0.528 0.219 0.631 0.962 0.070 0.145 0.861 1.593 0.249 nan 0.520 0.550 0.851 0.302 0.714 0.792 0.167 0.315 0.503 0.612 0.587 0.397 0.349 0.708 0.353 0.562 2.146 nan 0.846 0.713 0.110 0.203 0.039 0.585 0.424 0.631 0.131 0.306 0.280 3.029 6963 chr6 129917118 129931818 + 0 NA intron (NM_033515, intron 10 of 14) L1PB2|LINE|L1 106902 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 0.895 0.962 0.693 0.142 0.247 0.131 0.463 0.918 0.102 0.394 0.241 0.033 0.319 0.015 0.129 0.814 0.985 0.471 0.783 0.216 0.228 9.729 3.285 0.854 1.025 0.485 0.699 0.316 0.363 1.507 1.563 0.294 0.578 4.871 6.556 0.353 0.699 1.497 0.618 0.011 0.066 0.899 0.145 0.463 0.033 0.053 0.192 0.379 0.160 3377 chr17 36606788 36622214 + 0 NA exon (NM_001199417, exon 2 of 24) exon (NM_001199417, exon 2 of 24) 29781 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding nan 1.325 1.235 0.379 1.060 0.552 0.787 1.875 0.332 0.628 0.333 0.367 0.886 0.675 0.068 0.676 1.136 0.787 2.155 nan 1.128 0.796 0.336 1.501 1.534 0.407 0.886 1.429 2.010 nan 5.118 0.457 0.601 0.409 0.459 1.456 2.735 0.922 0.645 0.627 0.384 0.046 0.119 0.787 0.367 0.484 1.709 0.084 0.457 7438 chr7 113721866 113731014 + 0 NA promoter-TSS (NR_033766) promoter-TSS (NR_033766) 75 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding nan 0.727 4.851 2.130 1.744 0.755 0.888 1.137 0.174 3.174 1.538 4.758 6.563 0.475 0.115 0.871 0.587 2.090 2.597 0.426 0.512 0.757 0.257 3.018 3.110 3.579 4.692 3.793 8.081 2.901 3.398 0.173 0.518 10.551 9.091 1.849 2.358 1.004 0.591 0.061 6.087 3.010 1.683 0.888 4.758 0.766 1.723 0.142 0.648 6254 chr5 50462248 50501263 + 0 NA Intergenic Intergenic -197203 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding nan nan 0.894 0.138 0.464 0.214 0.445 0.075 0.058 0.415 0.292 0.566 0.533 0.067 0.129 0.226 0.182 0.432 0.585 1.409 2.069 nan 0.932 0.070 0.051 0.168 0.203 0.344 0.473 nan 2.325 0.052 0.114 6.823 8.202 0.318 0.665 0.322 0.304 0.027 0.137 2.386 0.398 0.445 0.566 0.388 0.107 0.015 0.117 4484 chr2 121939148 121947551 + 0 NA Intergenic Intergenic 99429 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 0.889 nan nan 3.011 0.328 0.343 0.809 0.045 0.037 1.276 0.260 0.935 1.636 0.103 0.053 1.174 1.546 0.244 0.382 0.473 0.688 12.054 4.487 3.903 4.425 0.188 0.332 5.370 6.492 0.360 0.265 0.161 0.406 1.293 1.161 0.185 0.335 1.387 0.885 0.658 0.381 0.157 0.113 0.809 0.935 0.206 0.212 0.030 0.073 2833 chr15 31629012 31659691 + 0 NA intron (NM_001302461, intron 1 of 1) intron (NM_001302461, intron 1 of 1) 25293 NM_015995 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 1.155 nan nan 1.322 1.175 0.606 0.803 1.210 0.200 1.292 0.800 4.081 2.759 0.142 0.055 1.891 3.636 0.404 0.819 4.456 5.020 2.019 0.523 0.465 0.505 1.041 1.393 2.390 2.884 2.164 2.359 1.812 3.230 1.588 1.494 0.377 0.512 0.688 0.440 2.046 1.758 0.409 1.213 0.803 4.081 1.007 0.677 3.366 0.115 8065 chr9 14514151 14548023 + 0 NA Intergenic Intergenic -132105 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 1.121 0.362 0.373 0.215 0.536 0.095 0.085 2.754 1.881 0.184 1.221 0.048 0.067 0.237 0.174 0.224 0.316 0.582 0.797 10.001 3.264 0.111 0.107 46.103 44.762 0.258 0.288 0.478 0.305 0.917 2.124 0.801 0.576 1.080 3.090 1.675 1.220 1.694 1.835 0.096 0.052 0.536 0.184 0.132 1.054 1.434 1.737 3726 chr18 31851247 31864873 + 0 NA Intergenic Intergenic -54545 NM_001198546 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding nan 0.893 0.878 1.582 0.564 0.305 0.432 0.044 0.060 1.719 0.825 0.366 0.708 0.039 0.086 0.424 0.362 0.158 0.228 1.338 1.434 6.915 3.550 0.132 0.133 0.754 0.920 nan 0.770 0.393 0.162 0.087 0.186 7.103 6.287 0.208 0.364 6.237 3.111 0.129 0.158 1.408 0.214 0.432 0.366 0.064 0.097 0.051 0.064 5059 chr21 10849737 10860786 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 135682 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 3.521 3.630 nan 0.694 0.993 0.568 0.646 0.418 2.825 0.340 1.265 0.440 1.636 0.343 1.433 1.542 0.574 0.680 0.722 1.326 2.470 0.633 0.525 0.789 0.831 1.435 2.262 0.907 0.818 2.187 0.542 0.640 1.008 0.524 0.858 0.757 1.312 0.718 1.219 0.192 0.633 0.317 0.180 0.646 0.440 0.131 0.185 0.252 0.344 2200 chr12 125115897 125182348 + 0 NA Intergenic L1ME3|LINE|L1 -97112 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 1.531 1.294 2.016 0.159 0.465 0.214 0.466 0.469 0.192 0.175 0.146 0.481 0.977 0.248 0.108 0.518 0.883 0.332 0.905 0.813 0.864 nan 0.307 0.278 0.330 2.276 2.749 0.952 1.204 3.361 3.236 0.361 0.344 0.352 0.517 1.331 3.795 1.192 0.849 0.620 0.394 0.092 0.117 0.466 0.481 0.712 0.570 0.094 1.232 5867 chr4 39306835 39315720 + 0 NA intron (NM_002913, intron 12 of 24) L1MB7|LINE|L1 56724 NM_001204747 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 0.866 0.540 1.065 0.105 0.416 0.268 0.186 0.691 0.055 0.458 0.245 0.268 0.176 0.074 0.105 0.536 0.510 1.086 0.926 0.714 0.930 0.360 0.201 0.165 0.180 0.816 1.353 1.098 0.760 2.785 1.899 0.421 0.491 0.068 0.085 0.351 0.892 4.908 2.145 0.019 0.296 0.207 0.186 0.268 0.177 0.242 0.090 0.208 2354 chr13 79167507 79184078 + 0 NA exon (NM_006237, exon 2 of 2) exon (NM_006237, exon 2 of 2) 1903 NM_006237 5457 Hs.654522 NM_006237 ENSG00000152192 POU4F1 BRN3A|Oct-T1|RDC-1|brn-3A POU class 4 homeobox 1 protein-coding nan nan 0.680 0.726 0.618 0.443 1.152 0.111 0.059 0.292 0.156 1.040 1.366 0.052 0.068 3.090 4.335 0.370 0.454 1.899 1.588 0.929 0.283 0.328 0.371 0.703 0.975 0.477 0.544 1.063 1.177 0.698 1.221 0.281 0.214 0.157 0.459 0.885 0.493 0.396 0.858 0.017 2.400 1.152 1.040 0.093 0.690 0.256 0.065 1421 chr11 57069871 57104245 + 0 NA intron (NM_033396, intron 3 of 11) AluSq2|SINE|Alu 5355 NM_033396 85456 Hs.530730 NM_033396 ENSG00000149115 TNKS1BP1 TAB182 tankyrase 1 binding protein 1 protein-coding 1.335 1.220 1.208 1.355 1.304 0.846 1.307 1.295 0.121 0.625 0.326 1.844 2.765 1.507 0.121 2.252 2.357 1.705 2.606 3.285 3.367 1.741 0.875 2.437 2.320 1.434 1.999 3.483 4.371 1.407 1.351 1.196 1.985 1.185 1.112 1.028 1.914 1.681 0.728 1.271 1.259 0.304 0.466 1.307 1.844 0.656 1.234 0.602 0.351 8340 chr9 139692960 139703960 + 0 NA TTS (NR_024580) TTS (NR_024580) -3914 NM_001173988 55684 Hs.370555 NM_017995 ENSG00000196642 RABL6 C9orf86|PARF|RBEL1|pp8875 RAB, member RAS oncogene family-like 6 protein-coding nan 2.486 3.776 4.514 2.037 1.137 2.205 1.006 0.309 1.811 0.886 3.272 6.481 1.009 0.090 1.966 2.218 2.710 3.880 5.251 5.036 nan 1.164 2.038 1.864 1.157 1.779 4.889 6.808 3.765 3.483 1.367 2.361 2.287 2.454 2.239 2.577 2.970 1.439 4.123 2.071 0.629 0.503 2.205 3.272 0.711 2.998 0.647 0.502 5100 chr21 34912025 34918441 + 0 NA promoter-TSS (NM_001291412) promoter-TSS (NM_001291412) -35 NM_001136006 2618 Hs.473648 NM_000819 ENSG00000159131 GART AIRS|GARS|GARTF|PAIS|PGFT|PRGS phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase protein-coding 6.739 3.432 5.888 5.824 6.101 3.147 5.116 3.308 0.176 2.715 0.979 5.813 14.380 4.092 0.106 10.674 8.355 7.591 9.967 9.588 10.036 6.252 4.475 19.606 21.441 6.589 8.226 8.788 13.499 14.648 13.793 5.494 9.013 8.591 11.471 10.381 9.497 nan 2.906 4.561 5.964 1.676 3.259 5.116 5.813 1.832 2.801 2.844 2.694 1059 chr10 19039663 19044889 + 0 NA Intergenic LTR9|LTR|ERV1 93963 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding nan 0.592 0.507 1.421 0.338 0.183 0.073 0.188 0.124 0.334 0.141 0.184 0.154 0.010 0.085 2.350 3.091 0.350 0.293 0.237 0.361 17.305 12.264 0.316 0.253 0.097 0.308 2.405 1.833 0.230 0.074 0.303 0.653 1.263 1.031 0.141 0.211 0.525 0.584 0.022 0.034 0.073 0.015 0.073 0.184 0.036 0.173 0.209 0.046 307 chr1 53942473 53954579 + 0 NA Intergenic Intergenic 23454 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 1.048 0.578 1.095 0.072 0.263 0.107 0.220 0.234 0.084 0.051 0.082 0.060 0.456 0.105 0.076 0.543 0.773 0.251 0.362 0.729 0.768 0.698 0.322 0.340 0.315 3.555 3.594 0.724 0.834 0.996 1.189 0.337 0.480 0.180 0.150 0.380 nan 0.398 0.494 0.133 0.059 0.023 0.080 0.220 0.060 0.611 0.300 0.164 0.093 8333 chr9 138969725 139014923 + 0 NA Intergenic Intergenic -5193 NM_144653 138151 Hs.112895 NM_144653 ENSG00000148411 NACC2 BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB NACC family member 2 protein-coding nan 2.742 3.219 1.939 2.387 1.330 1.861 0.985 0.252 0.692 0.465 2.906 4.349 0.727 0.081 1.024 1.663 1.330 2.934 4.946 4.194 nan 0.659 0.421 0.405 0.789 1.121 4.980 5.897 2.451 2.800 1.007 1.743 1.924 1.832 0.518 0.604 1.128 0.660 6.409 2.298 0.677 0.507 1.861 2.906 0.627 1.993 0.872 0.180 6229 chr5 34179124 34194846 + 0 NA Intergenic Intergenic -62352 NR_037951 100534612 Hs.171929 NR_037951 ENSG00000273294 C1QTNF3-AMACR - C1QTNF3-AMACR readthrough (NMD candidate) ncRNA 3.939 5.105 8.971 1.651 1.231 0.688 0.510 1.655 0.913 1.588 1.167 1.385 2.061 0.495 0.508 2.157 1.884 1.794 1.881 2.139 2.585 2.273 0.922 1.751 1.796 3.501 4.909 2.603 3.177 2.963 2.133 1.762 2.404 1.324 1.739 0.859 1.966 4.316 3.041 0.279 0.604 0.626 0.999 0.510 1.385 0.563 0.741 0.352 0.438 6796 chr6 48075358 48087896 + 0 NA Intergenic Intergenic -45202 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 0.896 1.668 1.221 0.273 0.337 0.255 0.577 0.196 0.051 0.324 0.206 0.057 0.823 0.132 0.527 0.308 0.598 0.346 0.244 0.325 9.845 12.024 0.324 0.338 0.370 0.617 3.340 nan 0.257 0.100 0.498 0.688 3.250 4.203 0.405 0.808 1.080 0.832 0.013 0.057 0.395 0.064 0.577 0.057 2.204 0.333 0.206 2801 chr14 105930839 105954748 + 0 NA promoter-TSS (NR_073085) promoter-TSS (NR_073085) 597 NR_073084 1397 Hs.534309 NM_001312 ENSG00000182809 CRIP2 CRIP|CRP2|ESP1 cysteine rich protein 2 protein-coding 5.261 2.997 4.115 2.413 2.147 1.202 3.440 0.574 0.181 1.945 0.849 5.477 8.147 2.577 0.109 2.148 4.648 1.005 1.945 5.754 5.629 3.941 3.414 0.594 0.519 2.393 3.730 3.059 6.714 1.473 1.496 0.973 1.787 3.730 1.936 0.562 0.399 0.641 0.370 10.244 1.471 1.030 0.792 3.440 5.477 0.825 1.561 0.672 0.062 6730 chr6 34553025 34572432 + 0 NA intron (NM_024294, intron 4 of 4) AluJr|SINE|Alu -38618 NM_001252294 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding nan 1.563 nan 1.969 0.439 0.271 0.488 0.292 0.108 0.774 0.383 1.279 2.874 0.107 0.117 0.544 0.625 0.396 nan nan 1.447 2.382 0.512 0.515 0.565 1.917 2.647 3.717 3.954 1.440 0.990 0.257 0.447 4.138 4.381 0.683 1.344 2.391 1.384 0.083 0.696 1.647 0.462 0.488 1.279 0.819 0.588 0.057 0.326 8222 chr9 100740387 100749583 + 0 NA promoter-TSS (NM_006401) promoter-TSS (NM_006401) -504 NM_006401 10541 Hs.730654 NM_006401 ENSG00000136938 ANP32B APRIL|PHAPI2|SSP29 acidic nuclear phosphoprotein 32 family member B protein-coding 6.223 3.545 9.652 8.890 6.148 3.490 7.980 2.425 0.394 3.143 1.226 7.440 8.773 3.756 0.121 6.302 6.695 9.144 12.939 8.925 8.759 4.503 2.233 9.773 9.690 3.759 4.694 9.440 nan 6.684 7.835 4.799 7.977 8.858 8.352 4.861 4.387 nan 1.637 3.047 3.845 2.749 4.184 7.980 7.440 2.625 3.150 1.755 1.334 1029 chr10 13194716 13212333 + 0 NA promoter-TSS (NM_018518) promoter-TSS (NM_018518) -30 NM_018518 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding nan 0.776 0.795 0.427 0.579 0.237 0.348 0.385 0.137 0.233 0.202 0.367 0.794 0.259 0.097 1.197 0.768 0.873 1.276 0.751 0.679 5.089 1.897 0.816 0.770 0.830 1.274 0.850 1.400 0.545 0.549 0.380 0.510 0.791 1.056 0.820 0.802 1.366 0.695 0.111 0.550 0.131 0.202 0.348 0.367 0.132 0.178 0.079 0.105 5 chr1 933631 938358 + 0 NA promoter-TSS (NM_021170) promoter-TSS (NM_021170) -442 NM_021170 57801 Hs.154029 NM_021170 ENSG00000188290 HES4 bHLHb42 hes family bHLH transcription factor 4 protein-coding 8.138 nan 11.693 3.582 2.516 1.529 2.751 5.584 0.729 0.711 0.104 0.197 8.566 11.414 0.185 5.246 7.143 9.759 16.993 1.883 1.049 3.137 2.028 7.221 7.353 6.115 nan nan 15.409 nan 1.592 2.869 2.837 3.217 2.550 0.565 1.285 0.353 0.310 7.435 1.127 0.507 30.773 2.751 0.197 2.317 0.278 0.707 0.441 2105 chr12 103419093 103426965 + 0 NA Intergenic MIRc|SINE|MIR 71577 NM_004316 429 Hs.703025 NM_004316 ENSG00000139352 ASCL1 ASH1|HASH1|MASH1|bHLHa46 achaete-scute family bHLH transcription factor 1 protein-coding 0.903 1.618 nan 1.503 1.060 0.601 1.187 0.096 0.045 0.427 0.397 1.401 6.640 0.070 0.113 0.273 0.089 0.140 0.225 1.889 1.845 1.143 0.391 0.136 0.201 0.180 0.375 1.850 1.926 0.594 0.354 0.046 0.138 0.568 0.307 0.292 0.629 2.846 1.784 6.742 7.609 0.121 0.031 1.187 1.401 0.112 0.467 0.012 0.109 552 chr1 153852218 153855840 + 0 NA intron (NM_020699, intron 1 of 10) intron (NM_020699, intron 1 of 10) 41422 NM_020699 57459 Hs.4779 NM_020699 ENSG00000143614 GATAD2B MRD18|P66beta|p68 GATA zinc finger domain containing 2B protein-coding nan nan 2.392 2.845 5.720 3.542 4.789 1.426 0.358 2.388 1.434 3.971 20.195 0.120 0.189 6.706 5.624 6.352 7.447 16.240 nan 9.118 2.372 0.808 0.811 4.989 5.382 6.710 8.954 6.140 6.505 3.397 5.633 4.433 7.111 2.845 3.544 3.506 2.069 5.192 5.831 0.373 1.647 4.789 3.971 1.204 3.534 3.441 0.375 3766 chr18 42373212 42386249 + 0 NA intron (NM_001130110, intron 2 of 3) LTR33|LTR|ERVL 118867 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding nan 0.970 1.470 0.223 0.385 0.268 0.893 0.226 0.062 0.439 0.222 0.309 0.453 0.025 0.099 0.610 0.662 0.278 0.565 0.770 0.868 3.105 1.599 0.072 0.064 0.673 0.923 0.528 0.558 1.107 0.757 0.183 0.292 3.302 4.192 0.471 nan 2.031 1.633 0.159 0.164 1.052 0.369 0.893 0.309 0.200 0.408 0.196 0.350 6580 chr6 1756342 1769121 + 0 NA intron (NM_001500, intron 7 of 10) intron (NM_001500, intron 7 of 10) 152050 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 1.186 1.387 1.255 1.356 1.989 1.155 0.376 0.759 0.101 0.586 0.342 0.439 0.328 0.051 0.095 0.819 0.767 4.090 8.647 0.500 0.563 1.333 0.283 0.527 0.593 0.459 0.778 2.424 2.104 0.341 0.275 0.485 0.671 0.313 0.477 0.477 1.389 1.408 0.849 0.247 0.702 0.291 0.376 0.439 0.038 0.412 0.164 0.272 1350 chr11 24357262 24374318 + 0 NA Intergenic MER61A|LTR|ERV1 -152726 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 0.467 0.764 0.488 0.103 0.141 0.085 0.037 0.057 0.094 0.144 0.121 0.056 0.319 0.006 0.115 0.493 0.368 0.327 0.227 0.232 0.344 0.083 0.070 0.181 0.209 3.585 4.376 0.158 0.209 0.182 0.048 0.173 0.210 0.198 0.178 0.083 0.152 0.427 0.341 0.053 0.115 0.034 0.004 0.037 0.056 0.131 0.012 0.041 0.052 7739 chr8 71084149 71108025 + 0 NA intron (NM_001321703, intron 4 of 22) L2c|LINE|L2 -112525 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 1.771 0.936 0.992 0.742 0.402 0.216 0.464 0.526 0.088 0.781 0.454 0.418 0.443 0.073 0.096 0.344 0.596 0.286 0.514 1.004 1.146 1.864 0.582 0.440 0.411 1.816 2.171 0.699 1.518 0.411 0.185 0.239 0.328 2.241 3.074 0.618 1.138 3.983 2.165 0.155 0.428 0.589 0.278 0.464 0.418 0.053 1.052 0.116 0.203 1976 chr12 58144491 58150990 + 0 NA Intergenic Intergenic -1141 NM_138396 92979 Hs.632709 NM_138396 ENSG00000139266 MARCH9 MARCH-IX|RNF179 membrane associated ring-CH-type finger 9 protein-coding nan 2.775 2.417 4.162 4.713 2.418 4.244 2.069 0.197 2.723 1.129 5.244 7.372 1.238 0.069 nan 4.241 3.118 4.515 6.304 nan 6.404 2.896 5.259 5.880 3.602 nan 10.613 14.488 4.938 5.173 2.258 4.065 4.373 5.119 4.948 6.877 4.650 2.230 1.201 5.792 1.025 1.321 4.244 5.244 1.415 2.582 1.541 1.545 7568 chr7 158371968 158381589 + 0 NA intron (NM_130843, intron 1 of 21) intron (NM_130843, intron 1 of 21) 3716 NM_130842 5799 Hs.490789 NM_002847 ENSG00000155093 PTPRN2 IA-2beta|IAR|ICAAR|PTPRP|R-PTP-N2 protein tyrosine phosphatase, receptor type N2 protein-coding 1.414 1.296 nan 4.830 4.419 2.246 0.814 0.050 0.050 2.730 0.923 5.937 6.250 0.137 0.095 0.836 1.166 0.099 0.129 2.510 2.338 6.878 2.546 0.053 0.052 0.491 0.665 6.967 6.364 0.687 0.589 0.756 0.987 1.472 1.505 0.194 0.281 4.290 2.172 0.257 5.285 0.147 0.107 0.814 5.937 0.291 1.299 0.195 0.038 817 chr1 205460739 205479532 + 0 NA Intergenic Intergenic -3549 NM_212503 5129 Hs.445402 NM_002596 ENSG00000117266 CDK18 PCTAIRE|PCTAIRE3|PCTK3 cyclin dependent kinase 18 protein-coding 1.678 1.666 2.235 0.920 2.442 1.084 1.536 1.926 0.523 0.702 0.690 0.954 3.379 0.231 0.124 0.878 1.976 0.770 1.448 1.959 1.894 4.292 0.861 nan nan 0.883 1.319 2.524 2.347 1.238 1.020 0.464 0.679 1.971 1.738 1.077 2.440 2.382 1.105 0.436 1.324 0.827 0.800 1.536 0.954 0.436 0.784 0.253 0.322 1504 chr11 70956681 70964693 + 0 NA Intergenic Intergenic -24845 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding nan 1.087 1.483 0.022 1.812 1.249 0.442 0.037 0.081 0.019 0.104 0.357 9.866 0.228 0.025 2.560 5.736 0.412 0.990 2.475 1.400 0.513 0.105 1.133 1.137 0.158 0.206 1.184 1.489 0.472 0.501 0.957 1.373 0.173 0.164 0.196 0.349 0.277 0.267 4.125 0.199 0.023 0.029 0.442 0.357 0.291 0.013 0.431 0.047 3350 chr17 29032687 29040880 + 0 NA non-coding (NR_024187, exon 1 of 8) non-coding (NR_024187, exon 1 of 8) 157 NR_144393 440423 Hs.628886 NR_024187 SUZ12P1 SUZ12P SUZ12 polycomb repressive complex 2 subunit pseudogene 1 pseudo nan nan nan 1.767 4.576 2.853 4.304 1.801 0.409 1.582 0.876 5.705 7.102 3.825 0.130 4.191 5.587 2.407 4.126 6.937 6.409 4.643 1.864 3.544 3.789 2.167 3.115 5.188 7.830 7.239 8.720 4.453 9.261 4.420 3.900 6.061 nan 2.243 1.179 4.315 4.140 1.843 3.656 4.304 5.705 1.244 1.674 3.517 3.534 1253 chr10 127912154 127932534 + 0 NA intron (NM_003474, intron 3 of 22) intron (NM_003474, intron 3 of 22) 154783 NM_001288975 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding nan 0.941 0.826 0.138 0.322 0.167 0.224 0.249 0.093 0.100 0.073 0.041 0.645 0.048 0.058 0.147 0.140 0.165 0.169 0.304 0.283 4.673 1.192 0.143 0.143 0.200 0.285 0.762 0.824 0.185 0.111 0.082 0.136 0.279 0.638 0.184 0.277 1.741 0.962 0.167 0.083 0.028 0.162 0.224 0.041 0.247 0.570 0.010 0.061 7850 chr8 103657981 103671281 + 0 NA intron (NM_005655, intron 1 of 3) intron (NM_005655, intron 1 of 3) 1561 NR_103760 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 5.256 nan nan 4.526 4.211 2.377 2.358 2.380 0.190 0.862 0.658 3.472 13.367 2.801 0.113 1.749 2.941 2.571 3.374 9.517 7.395 nan 1.708 5.892 5.466 1.827 nan 8.946 nan nan 4.278 1.793 3.804 2.958 2.337 2.719 nan 2.030 1.084 3.770 3.424 1.191 2.237 2.358 3.472 0.379 4.217 2.031 1.069 5941 chr4 77350498 77392158 + 0 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 15075 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 0.655 0.609 0.488 0.159 0.587 0.273 0.485 0.730 0.139 0.056 0.098 0.508 0.281 4.488 0.176 0.273 0.167 0.292 0.561 0.474 0.480 0.617 0.195 0.409 0.387 0.217 0.392 0.449 0.411 0.312 0.154 0.118 0.164 0.109 0.123 0.158 0.319 0.310 0.309 0.036 0.144 0.020 0.069 0.485 0.508 0.019 0.034 0.035 0.039 1730 chr11 129009215 129018621 + 0 NA intron (NM_001142685, intron 2 of 21) intron (NM_001142685, intron 2 of 21) 48175 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 0.699 0.884 0.551 0.132 0.381 0.166 0.269 0.152 0.051 0.199 0.117 0.140 0.261 3.517 0.145 0.722 0.719 0.610 1.021 0.318 0.344 0.361 0.148 0.309 0.396 1.214 1.784 0.667 0.659 0.382 0.219 5.395 5.707 0.187 0.404 0.194 nan 0.155 0.170 0.042 0.067 0.051 0.026 0.269 0.140 0.021 0.065 12.355 0.093 1316 chr11 12742111 12751517 + 0 NA intron (NM_021961, intron 2 of 12) MIR|SINE|MIR 50845 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 0.913 nan 1.779 4.157 2.810 1.213 2.146 1.046 0.102 1.744 0.620 6.192 4.557 0.115 0.084 nan 1.006 0.950 3.033 5.064 4.762 6.043 2.522 0.662 0.801 1.801 nan 4.755 5.160 0.365 0.229 0.336 0.619 2.678 3.666 0.348 0.870 2.707 nan 5.666 3.588 0.779 0.839 2.146 6.192 0.259 0.528 0.165 0.126 6363 chr5 91892710 91901172 + 0 NA Intergenic Intergenic 1010108 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA nan 5.466 0.719 0.091 0.328 0.250 3.583 1.173 0.057 0.143 0.175 0.789 0.361 0.157 0.215 0.165 0.187 0.373 0.227 0.384 3.475 1.053 0.160 0.149 0.848 0.933 0.296 0.329 0.289 0.163 0.088 0.167 1.590 1.873 0.049 nan 0.414 0.417 0.506 0.105 0.372 0.028 3.583 0.069 0.419 0.047 0.029 7630 chr8 29194263 29217399 + 0 NA 5' UTR (NM_057158, exon 1 of 5) 5' UTR (NM_057158, exon 1 of 5) 491 NM_057158 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding nan 2.516 nan 1.443 3.242 1.966 0.996 0.213 0.083 0.224 0.112 2.095 6.140 0.085 0.107 1.133 1.253 2.127 3.597 nan 3.226 nan 1.992 0.387 0.401 0.170 0.310 3.341 3.830 2.869 2.505 0.285 0.357 2.017 1.899 0.487 1.068 nan nan 1.864 0.123 0.218 0.114 0.996 2.095 0.310 2.965 0.056 0.251 4072 chr19 41767670 41773593 + 0 NA promoter-TSS (NM_001321211) promoter-TSS (NM_001321211) -324 NM_001301016 11100 Hs.155218 NM_007040 ENSG00000105323 HNRNPUL1 E1B-AP5|E1BAP5|HNRPUL1 heterogeneous nuclear ribonucleoprotein U like 1 protein-coding 8.525 5.179 7.363 8.094 9.305 5.355 7.616 3.638 0.864 3.476 1.530 7.931 10.456 8.674 0.293 7.942 7.720 8.943 11.637 15.152 14.284 11.740 8.422 24.612 26.813 6.504 7.994 9.506 15.529 15.907 17.395 12.586 17.443 9.950 12.569 12.758 10.283 5.498 2.746 6.331 9.106 2.990 4.773 7.616 7.931 2.052 3.661 4.827 3.908 1833 chr12 11987513 12016788 + 0 NA intron (NM_001987, intron 3 of 7) AluJb|SINE|Alu 199362 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 0.866 1.089 1.131 3.580 2.310 1.252 0.510 0.158 0.072 1.090 0.616 2.025 3.854 0.082 0.108 0.232 0.266 0.492 0.911 nan 2.175 2.453 0.879 0.507 0.587 0.461 0.719 5.542 6.233 0.469 0.293 0.318 0.607 0.171 0.188 0.335 0.633 1.476 0.711 1.277 0.731 0.059 0.027 0.510 2.025 0.046 0.592 0.158 0.194 3566 chr17 75032272 75051536 + 0 NA Intergenic MER66C|LTR|ERV1 -42821 NM_001204408 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 1.148 1.123 1.529 0.213 1.527 0.886 1.050 0.140 0.101 0.771 0.518 1.056 1.060 0.066 0.104 2.469 2.366 0.391 0.475 1.887 1.621 2.320 0.688 0.616 0.670 nan 0.925 1.345 1.938 1.465 1.186 0.702 0.848 0.720 0.654 0.417 0.652 nan 1.403 1.232 0.621 0.157 0.160 1.050 1.056 0.264 0.301 0.343 0.177 4309 chr2 43661545 43670404 + 0 NA intron (NR_144316, intron 26 of 36) MER44D|DNA|TcMar-Tigger 157139 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA, armadillo repeat containing protein-coding 1.105 nan 1.514 0.160 0.281 0.166 0.216 0.220 0.019 0.124 0.159 0.201 0.434 0.062 0.143 0.240 0.188 0.286 0.541 nan 0.435 0.395 0.130 0.437 0.402 0.584 0.690 0.529 0.569 0.525 0.242 0.142 0.195 0.203 0.268 0.918 nan 3.981 1.303 0.207 0.160 0.195 0.098 0.216 0.201 0.021 0.069 0.112 0.902 8164 chr9 77193657 77200500 + 0 NA intron (NM_006914, intron 1 of 9) intron (NM_006914, intron 1 of 9) -83609 NR_125791 103752585 Hs.635501 NR_125791 RORB-AS1 - RORB antisense RNA 1 ncRNA nan nan nan 0.102 0.384 0.054 0.056 0.076 0.024 0.069 0.085 0.139 0.283 0.096 0.069 0.287 0.141 6.961 nan 0.223 nan 0.098 0.008 0.701 0.767 0.083 0.188 0.216 0.246 0.239 0.093 0.104 0.194 0.048 0.093 0.188 0.458 0.858 0.838 0.008 0.091 0.028 0.056 0.139 0.029 0.029 0.111 247 chr1 40531380 40544828 + 0 NA TTS (NM_001142604) TTS (NM_001142604) 25038 NM_001142604 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 8.718 0.747 nan 1.022 0.393 0.120 11.749 0.252 0.205 0.198 0.226 0.223 0.426 0.128 0.160 0.369 0.381 0.612 0.604 0.727 0.952 0.293 0.148 0.395 0.517 0.437 nan nan 2.082 0.370 0.238 0.446 nan 0.102 0.089 0.340 1.027 0.898 0.776 0.103 0.119 0.014 11.823 11.749 0.223 0.126 0.105 0.146 0.119 1340 chr11 20472120 20524970 + 0 NA intron (NM_005788, intron 13 of 15) intron (NM_005788, intron 13 of 15) 89469 NM_005788 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 0.915 1.322 0.892 0.472 1.756 0.863 0.138 0.147 0.090 0.493 0.263 0.630 0.593 0.037 0.093 0.585 0.535 0.213 0.318 0.948 1.099 1.271 0.699 0.372 0.357 1.550 1.784 0.877 0.938 0.876 0.653 0.326 0.609 1.384 1.969 0.853 2.999 1.158 0.610 0.742 0.799 0.383 0.101 0.138 0.630 0.018 0.038 0.225 1.208 289 chr1 46148134 46155592 + 0 NA intron (NM_021639, intron 1 of 12) CpG 439 NM_021639 60313 Hs.238432 NM_021639 ENSG00000159592 GPBP1L1 SP192 GC-rich promoter binding protein 1 like 1 protein-coding nan 2.874 nan 5.469 4.714 2.308 2.586 3.740 0.470 3.456 1.636 2.124 12.159 4.169 0.131 5.335 4.973 6.102 9.463 9.080 7.913 5.736 2.484 19.002 20.792 5.154 nan nan 14.665 4.797 5.153 5.711 nan 3.172 4.451 5.962 7.612 3.526 1.739 4.190 4.496 0.664 2.426 2.586 2.124 1.442 2.095 4.566 2.308 6759 chr6 41038070 41043931 + 0 NA promoter-TSS (NM_001329685) promoter-TSS (NM_001329685) 293 NM_021705 4800 Hs.10441 NM_002505 ENSG00000001167 NFYA CBF-A|CBF-B|HAP2|NF-YA nuclear transcription factor Y subunit alpha protein-coding 6.222 4.438 5.186 7.667 6.904 3.311 6.341 4.080 0.302 3.138 1.539 8.212 11.943 5.389 0.185 5.664 7.617 5.974 9.456 10.748 9.276 13.777 7.942 16.150 16.807 4.587 5.815 12.844 17.092 7.323 7.872 2.695 5.675 7.057 7.294 7.230 8.634 4.024 1.928 5.815 5.287 1.257 3.530 6.341 8.212 1.638 3.464 2.312 3.120 5346 chr3 25333059 25351544 + 0 NA intron (NM_001290216, intron 4 of 10) AluSx1|SINE|Alu -39992 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 0.686 1.260 0.664 0.062 0.258 0.095 0.347 0.130 0.070 0.009 0.072 0.077 0.142 0.135 0.051 0.187 0.105 3.569 8.893 0.271 0.365 0.092 0.052 0.094 0.137 0.343 0.564 0.131 0.140 nan 0.155 0.146 0.275 1.024 1.122 0.087 0.153 0.316 0.347 0.191 0.053 0.320 0.136 0.347 0.077 0.018 0.038 0.037 0.033 974 chr1 246148835 246173322 + 0 NA intron (NM_001167740, intron 5 of 11) intron (NM_001167740, intron 5 of 11) 419636 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding nan 1.248 nan 0.475 0.484 0.268 0.551 0.553 0.210 0.224 0.242 1.036 0.773 0.053 0.085 0.853 0.899 2.624 4.301 1.004 1.143 1.071 0.426 1.764 1.807 0.641 0.923 0.527 0.881 0.345 0.210 0.619 0.778 0.157 0.269 0.325 0.708 0.582 0.507 0.102 0.203 0.047 0.065 0.551 1.036 0.028 0.523 0.675 0.174 8016 chr9 2282645 2304488 + 0 NA Intergenic Intergenic 135110 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 1.109 3.917 2.897 2.800 1.670 0.756 1.996 0.122 0.066 2.900 1.052 5.406 8.131 0.039 0.089 0.194 0.128 0.440 0.821 4.537 4.841 8.542 4.350 0.608 0.589 1.002 1.644 6.108 6.824 0.654 0.533 0.197 0.236 3.693 2.937 0.235 nan 6.041 3.619 2.563 2.656 0.579 0.516 1.996 5.406 0.620 0.912 0.149 0.046 5283 chr22 42224872 42231085 + 0 NA Intergenic MIR|SINE|MIR -1105 NR_103834 6721 Hs.443258 NM_004599 ENSG00000198911 SREBF2 SREBP-2|SREBP2|bHLHd2 sterol regulatory element binding transcription factor 2 protein-coding 4.616 nan 3.017 3.745 7.008 3.238 8.168 3.023 0.489 2.578 1.057 9.666 5.433 2.268 0.176 5.192 5.188 6.889 9.635 5.951 4.600 5.503 4.579 9.124 9.633 4.683 5.673 4.255 7.852 nan 7.458 3.051 5.175 6.098 6.050 5.379 6.490 2.477 1.402 3.777 4.794 2.366 2.428 8.168 9.666 1.518 4.158 2.506 3.065 7889 chr8 116659349 116681339 + 0 NA intron (NM_001282903, intron 1 of 6) intron (NM_001282903, intron 1 of 6) 9895 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding nan nan 1.840 0.143 0.279 0.117 0.069 0.474 0.146 0.185 0.115 0.088 0.581 0.085 0.078 0.405 0.378 0.501 0.597 1.077 1.058 nan 0.143 1.892 nan 3.954 nan 0.553 0.668 3.115 2.698 0.115 0.223 1.389 1.177 0.726 1.210 1.029 0.815 0.023 0.090 0.317 0.148 0.069 0.088 0.053 0.487 0.063 0.297 5764 chr3 189177787 189187981 + 0 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -131651 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 1.217 1.180 0.774 0.155 6.218 3.241 0.327 0.262 0.121 0.183 0.146 0.165 0.358 0.052 0.080 0.293 0.112 0.255 0.435 0.280 0.398 1.759 0.730 0.345 0.329 0.353 0.472 0.406 0.433 0.809 0.434 0.102 0.214 0.182 0.196 0.431 0.568 0.602 0.436 0.033 0.094 0.046 0.139 0.327 0.165 0.028 0.040 0.049 0.073 2920 chr15 67368686 67419389 + 0 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) -24017 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 0.989 0.961 nan 0.182 0.310 0.177 0.392 2.298 0.251 0.118 0.100 0.238 0.395 0.045 0.074 0.268 0.175 1.193 3.638 0.307 0.323 nan 0.194 0.300 0.299 0.336 0.596 0.777 0.768 0.420 0.232 0.430 0.520 0.466 0.919 0.159 0.216 0.396 0.378 0.018 0.108 0.101 0.087 0.392 0.238 0.174 0.075 0.396 0.075 8125 chr9 36978897 36987258 + 0 NA intron (NM_001280553, intron 4 of 7) MER20B|DNA|hAT-Charlie 51399 NM_001280549 5079 Hs.654464 NM_016734 ENSG00000196092 PAX5 ALL3|BSAP paired box 5 protein-coding 0.881 nan 1.065 0.647 0.361 0.144 0.430 0.065 0.096 0.707 0.370 0.672 0.755 0.065 0.079 0.334 0.491 0.135 0.190 0.670 0.697 8.336 2.736 0.268 0.244 0.590 1.028 0.672 0.666 0.773 0.574 0.323 0.470 3.810 3.970 0.400 1.072 1.412 0.941 0.047 0.344 1.166 0.237 0.430 0.672 0.199 0.109 0.071 0.134 7942 chr8 134296361 134311070 + 0 NA intron (NM_006096, intron 1 of 15) intron (NM_006096, intron 1 of 15) 5832 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding nan 1.457 4.265 3.537 1.198 0.611 0.462 0.545 0.075 0.437 0.215 1.041 6.823 0.294 0.082 0.643 1.434 0.679 1.016 1.619 1.461 5.215 1.380 nan 3.389 0.429 0.886 2.687 2.715 1.022 1.485 0.581 1.002 0.702 0.468 1.009 2.350 1.135 0.882 2.212 1.026 0.064 0.212 0.462 1.041 0.483 1.825 0.242 1.175 7599 chr8 12934486 12991870 + 0 NA intron (NM_182643, intron 7 of 17) AluSx1|SINE|Alu 10575 NM_001164271 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 0.762 0.603 nan 0.053 0.188 0.075 0.094 0.590 0.132 0.107 0.126 0.084 0.078 0.149 0.116 1.339 1.756 4.418 5.991 0.254 nan 0.107 0.064 0.647 0.724 0.578 0.834 0.077 0.101 0.895 0.924 0.329 0.685 0.072 0.076 0.512 1.132 0.307 0.461 0.016 0.039 0.015 0.034 0.094 0.084 0.002 0.039 0.293 0.412 5252 chr22 36230732 36237406 + 0 NA intron (NM_001082578, intron 2 of 13) intron (NM_001082578, intron 2 of 13) 2561 NM_001082577 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding protein, fox-1 homolog 2 protein-coding 3.299 nan 3.779 2.628 2.133 1.254 2.786 3.663 0.244 1.804 0.926 4.092 7.334 1.975 0.106 3.907 3.627 3.095 6.312 8.255 6.894 6.341 1.745 5.468 5.805 5.415 nan 3.594 6.526 nan 4.597 1.037 1.379 5.436 8.080 1.546 3.121 2.889 1.301 2.370 2.915 1.414 0.428 2.786 4.092 1.303 2.418 1.056 1.129 4624 chr2 179312871 179318221 + 0 NA promoter-TSS (NM_001139517) promoter-TSS (NM_001139517) -62 NM_001139517 8575 Hs.570274 NM_003690 ENSG00000180228 PRKRA DYT16|HSD14|PACT|RAX protein activator of interferon induced protein kinase EIF2AK2 protein-coding 5.311 3.580 4.324 4.788 5.568 3.272 3.755 1.639 0.322 1.811 1.173 4.677 10.241 2.845 0.112 5.241 4.491 6.832 8.929 6.261 5.962 8.011 5.182 16.499 17.137 3.038 4.127 14.698 20.405 5.322 5.265 3.542 5.249 4.914 5.427 6.788 6.380 2.492 1.459 4.817 2.193 0.802 1.962 3.755 4.677 1.517 1.447 1.292 1.040 7141 chr7 5567198 5573210 + 0 NA promoter-TSS (NM_001101) promoter-TSS (NM_001101) 28 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 8.638 4.140 6.761 5.068 6.205 2.980 6.354 3.111 0.549 2.641 1.837 10.360 nan 9.008 0.228 4.239 8.036 3.856 nan 9.641 11.812 nan 2.094 16.302 17.526 3.815 5.960 nan 6.529 5.024 4.965 4.418 10.571 4.659 3.349 3.199 6.788 2.033 1.075 7.132 4.403 2.006 4.544 6.354 10.360 2.490 5.465 1.709 3.438 859 chr1 214150343 214196901 + 0 NA intron (NM_001270616, intron 2 of 4) intron (NM_001270616, intron 2 of 4) 11778 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 1.841 2.253 3.283 4.769 1.920 0.992 0.619 0.124 0.072 3.027 1.627 4.896 nan 0.074 0.114 2.152 2.582 2.735 2.088 8.472 8.395 nan 1.885 4.645 4.919 2.891 nan 4.852 4.667 0.992 0.908 1.115 2.091 2.911 2.729 1.043 2.412 3.725 1.891 0.048 1.239 0.672 1.812 0.619 4.896 0.284 1.566 1.215 0.407 2674 chr14 75099632 75109559 + 0 NA Intergenic MIRb|SINE|MIR -25561 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 2.205 1.155 1.728 0.891 0.245 0.083 0.728 0.165 0.097 0.118 0.135 0.158 0.571 0.064 0.096 0.401 0.287 0.166 0.279 0.528 0.631 1.154 0.286 0.630 0.682 0.292 0.681 1.901 nan 6.253 6.056 0.217 0.261 0.757 0.627 1.675 6.381 1.681 nan 0.381 0.407 0.231 0.086 0.728 0.158 1.134 0.052 0.010 8.638 6952 chr6 126049464 126074767 + 0 NA Intergenic Intergenic -8617 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 1.425 1.422 1.265 0.936 0.342 0.164 0.637 1.775 0.152 0.217 0.122 0.360 2.097 0.167 0.113 0.348 0.197 0.313 0.641 0.681 0.583 3.684 1.285 0.476 0.536 0.523 0.794 0.909 0.948 7.520 8.162 0.100 0.146 6.402 6.842 1.021 1.666 0.773 0.472 0.288 0.182 1.909 0.025 0.637 0.360 0.658 0.597 0.043 1.373 4605 chr2 175862687 175871491 + 0 NA intron (NR_038133, intron 1 of 11) intron (NR_038133, intron 1 of 11) 2892 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 3.395 1.990 2.567 2.104 1.565 0.752 2.456 1.113 0.394 0.767 0.682 1.764 3.603 1.232 0.082 2.749 3.023 1.238 1.608 2.419 1.877 2.430 0.797 2.688 2.513 2.497 3.082 5.735 9.994 2.095 1.896 1.486 3.182 2.342 2.165 4.191 4.073 1.250 0.758 2.654 1.234 0.637 1.508 2.456 1.764 0.938 0.688 0.839 1.426 976 chr1 246308987 246331309 + 0 NA intron (NM_001167740, intron 5 of 11) intron (NM_001167740, intron 5 of 11) 260566 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding nan 1.267 nan 1.624 1.042 0.709 0.327 0.250 0.068 0.630 0.525 1.311 4.885 0.045 0.082 0.605 0.783 1.438 1.780 2.781 2.671 1.592 0.453 0.590 0.633 0.750 1.007 2.867 3.060 0.299 0.148 0.397 0.759 1.317 1.333 0.538 1.266 0.882 0.651 2.941 0.683 0.252 0.126 0.327 1.311 0.391 1.026 0.671 0.299 3589 chr17 77016049 77033281 + 0 NA promoter-TSS (NR_040019) promoter-TSS (NR_040019) -928 NR_040019 100507410 Hs.666723 NR_040018 ENSG00000265096 C1QTNF1-AS1 - C1QTNF1 antisense RNA 1 ncRNA 1.380 2.750 1.625 0.321 0.961 0.388 0.960 2.364 0.395 0.543 0.213 0.166 2.129 0.126 0.091 0.740 0.874 0.401 1.244 0.942 0.870 3.025 0.852 0.305 0.280 nan 0.860 0.506 0.730 1.817 1.650 0.282 0.387 1.051 1.091 0.229 0.469 nan 0.866 0.897 3.872 0.216 0.046 0.960 0.166 0.209 0.817 0.114 0.087 2129 chr12 107366692 107373783 + 0 NA TTS (NM_025198) TTS (NM_025198) 10707 NM_025198 80298 Hs.5009 NM_025198 ENSG00000120832 MTERF2 MTERFD3|mTERFL mitochondrial transcription termination factor 2 protein-coding 1.173 0.855 nan 0.535 0.355 0.277 0.322 1.024 0.182 0.312 0.137 0.202 0.599 0.123 0.122 0.375 0.264 0.422 0.734 0.472 0.683 1.530 0.578 0.446 0.386 1.974 2.919 2.120 2.049 0.512 0.215 0.167 0.321 4.880 7.582 0.397 0.626 1.447 0.896 0.101 0.122 1.612 0.101 0.322 0.202 0.054 1.351 0.122 0.122 8232 chr9 109622069 109633749 + 0 NA intron (NM_021224, intron 1 of 12) intron (NM_021224, intron 1 of 12) 2531 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 Zfp462 zinc finger protein 462 protein-coding 3.437 2.028 2.084 2.864 2.490 1.497 2.913 2.279 0.192 1.502 0.909 2.838 8.605 0.796 0.058 0.225 0.225 1.928 3.685 8.470 6.886 1.731 0.529 0.687 0.677 2.052 2.866 2.552 nan 7.121 8.380 1.016 2.210 2.995 2.438 3.017 4.122 nan 1.454 1.616 1.793 1.079 1.120 2.913 2.838 1.675 0.968 0.763 1.523 5766 chr3 189465227 189483959 + 0 NA intron (NM_001329964, intron 3 of 13) intron (NM_001329964, intron 3 of 13) -32856 NM_001114980 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 1.053 1.250 0.812 0.119 0.418 0.315 0.233 0.179 0.163 0.200 0.203 0.083 0.605 0.029 0.073 0.275 0.127 0.221 0.594 0.320 0.391 4.428 1.291 0.317 0.261 0.189 0.310 0.399 0.466 0.585 0.263 0.094 0.141 0.605 0.536 0.286 0.648 0.647 0.469 0.051 0.056 0.125 0.106 0.233 0.083 0.031 0.027 0.021 0.151 2182 chr12 122005772 122021335 + 0 NA intron (NM_032590, intron 3 of 22) intron (NM_032590, intron 3 of 22) 4811 NM_001005366 84678 Hs.524800 NM_032590 ENSG00000089094 KDM2B CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2 lysine demethylase 2B protein-coding 1.750 1.371 1.456 0.926 2.774 1.351 1.278 0.785 0.105 0.671 0.455 1.275 2.322 1.713 0.108 0.915 1.610 2.353 2.625 4.221 3.422 nan 0.638 1.604 1.796 1.752 2.369 2.085 3.537 1.560 1.410 1.475 2.255 1.144 0.970 1.029 1.821 2.432 1.409 3.971 9.140 0.296 0.561 1.278 1.275 0.571 0.996 1.108 0.542 6328 chr5 73268951 73298410 + 0 NA Intergenic Intergenic 174337 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 1.361 nan 1.017 0.116 0.457 0.326 0.300 0.092 0.148 0.175 0.120 0.204 0.457 1.492 0.162 0.222 0.144 0.304 0.525 0.347 0.371 nan 1.117 0.119 0.142 2.705 nan 0.276 0.287 0.880 0.730 0.067 0.134 1.001 0.774 1.024 4.343 0.534 0.438 0.437 0.100 0.145 0.166 0.300 0.204 0.317 0.049 0.013 2.381 6232 chr5 34912840 34918249 + 0 NA promoter-TSS (NM_018321) promoter-TSS (NM_018321) 187 NR_026591 5810 Hs.38114 NM_002853 ENSG00000113456 RAD1 HRAD1|REC1 RAD1 checkpoint DNA exonuclease protein-coding 3.372 3.610 6.060 9.244 3.272 1.273 2.720 4.511 0.576 2.889 1.921 4.585 7.117 2.948 0.158 5.111 4.480 5.279 7.631 5.727 5.271 5.225 2.148 8.198 8.800 7.980 9.827 7.336 9.252 8.227 8.712 4.859 8.818 4.077 4.714 3.617 3.807 4.156 2.253 1.004 1.639 0.477 0.938 2.720 4.585 1.275 3.223 2.222 1.156 309 chr1 53994282 54014858 + 0 NA intron (NM_147193, intron 3 of 9) intron (NM_147193, intron 3 of 9) 79498 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 1.469 0.700 0.996 0.094 0.248 0.116 0.553 0.715 0.155 0.121 0.109 0.087 0.472 0.084 0.092 0.497 0.660 0.424 0.836 0.793 0.759 0.726 0.289 0.469 0.488 3.030 3.454 0.275 0.482 1.727 2.337 0.408 0.413 0.276 0.336 0.710 nan 0.469 0.552 0.193 0.120 0.056 0.117 0.553 0.087 1.317 0.079 0.091 0.281 1321 chr11 13348452 13360976 + 0 NA intron (NM_001297719, intron 3 of 19) AluSx|SINE|Alu 55440 NM_001297722 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 0.806 nan 0.847 2.391 1.483 0.869 1.478 1.112 0.115 0.603 0.320 1.142 3.323 0.074 0.083 nan 0.696 0.758 1.207 2.498 2.592 1.038 0.263 0.608 0.685 0.717 nan 2.007 2.183 0.496 0.320 0.420 0.601 1.802 2.335 0.213 0.448 1.464 nan 4.585 1.703 0.496 0.158 1.478 1.142 0.046 0.212 0.142 0.049 7457 chr7 117436439 117460173 + 0 NA intron (NM_033427, intron 3 of 22) intron (NM_033427, intron 3 of 22) 65255 NM_033427 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding nan 0.736 0.801 0.140 0.149 0.095 0.049 0.681 0.088 0.125 0.184 0.076 1.172 0.076 0.178 0.365 0.248 0.198 0.229 0.273 0.283 0.118 0.098 0.262 0.220 0.218 0.344 0.807 0.871 0.453 0.227 0.193 0.268 0.142 0.183 0.094 0.223 0.627 0.532 2.942 0.601 0.080 0.046 0.049 0.076 0.012 0.047 0.117 0.032 6474 chr5 139485661 139496222 + 0 NA Intergenic Intergenic -2767 NM_005859 5813 Hs.443121 NM_005859 ENSG00000185129 PURA MRD31|PUR-ALPHA|PUR1|PURALPHA purine rich element binding protein A protein-coding 2.851 2.799 nan 1.778 2.105 1.317 1.319 0.855 0.168 1.298 0.393 3.106 4.953 2.817 0.164 3.994 4.764 3.578 4.256 4.168 3.909 2.471 0.954 5.681 5.801 1.671 2.354 3.035 4.237 4.079 4.328 4.906 9.806 1.286 1.016 3.139 4.185 1.416 0.629 0.731 2.420 0.135 1.389 1.319 3.106 0.740 3.003 3.701 1.181 200 chr1 35653504 35663986 + 0 NA promoter-TSS (NR_136703) promoter-TSS (NR_136703) 1 NR_136702 6421 Hs.355934 NM_005066 ENSG00000116560 SFPQ POMP100|PPP1R140|PSF splicing factor proline and glutamine rich protein-coding 4.018 nan 3.688 4.546 3.466 1.936 2.780 1.768 0.387 3.052 1.388 7.030 4.764 3.011 0.179 3.519 3.394 3.954 5.652 7.818 7.752 nan 2.121 7.657 7.802 2.980 3.795 10.219 14.214 nan 5.809 3.535 6.768 3.041 2.964 5.668 4.143 1.778 nan 2.681 2.852 0.457 1.945 2.780 7.030 0.916 1.316 0.913 1.143 8387 chrX 53109558 53124709 + 0 NA 3' UTR (NM_022117, exon 7 of 7) 3' UTR (NM_022117, exon 7 of 7) 5591 NM_022117 64061 Hs.136164 NM_022117 ENSG00000184205 TSPYL2 CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX TSPY like 2 protein-coding 1.733 1.732 0.823 1.361 2.685 1.398 0.825 0.677 0.109 0.808 0.498 0.999 2.837 1.774 0.067 0.750 0.974 1.505 2.161 3.233 2.474 2.597 0.798 1.937 1.955 0.810 1.210 2.345 3.256 2.134 2.042 0.828 1.551 1.598 1.655 1.457 2.707 1.065 0.528 0.831 0.617 0.339 0.707 0.825 0.999 0.337 2.645 0.653 0.459 5145 chr21 43868758 43888025 + 0 NA Intergenic AluY|SINE|Alu 38073 NM_001286506 89765 Hs.661069 NM_080860 ENSG00000160188 RSPH1 CT79|RSP44|RSPH10A|TSA2|TSGA2 radial spoke head 1 homolog protein-coding nan 1.094 1.219 0.711 1.832 0.999 0.485 0.054 0.058 0.431 0.162 1.719 0.778 0.051 0.058 2.255 3.689 0.930 1.413 3.049 2.349 nan 1.697 1.271 1.337 0.187 nan 2.189 3.528 1.266 1.375 1.277 1.785 0.572 0.403 0.685 2.452 1.744 1.432 1.220 1.154 0.029 0.128 0.485 1.719 0.300 0.131 1.243 0.939 2651 chr14 65089273 65105038 + 0 NA Intergenic MER2|DNA|TcMar-Tigger -73971 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding nan nan 4.968 0.260 0.464 0.306 0.318 0.277 0.163 0.267 0.131 0.264 0.391 0.165 0.130 0.344 0.293 0.300 0.361 0.497 0.548 0.778 0.282 nan 0.567 0.332 0.541 0.661 nan 1.066 0.936 0.254 0.278 1.649 2.400 0.671 1.621 1.224 0.937 0.225 0.666 0.577 0.244 0.318 0.264 0.221 0.090 0.088 0.883 7160 chr7 11335572 11384082 + 0 NA Intergenic LTR33|LTR|ERVL 346328 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding nan 1.055 nan 0.174 0.252 0.148 0.211 0.142 0.077 0.026 0.032 0.232 0.470 0.050 0.150 nan 0.280 0.594 0.456 0.472 0.557 0.251 0.104 14.739 16.024 0.951 1.352 0.372 0.352 0.333 0.169 0.144 0.266 0.271 0.358 0.341 0.604 0.588 0.508 0.078 0.109 0.072 0.070 0.211 0.232 0.108 0.104 0.055 0.117 3982 chr19 14116093 14118471 + 0 NA promoter-TSS (NM_002918) promoter-TSS (NM_002918) -148 NM_002918 5989 Hs.655215 NM_002918 ENSG00000132005 RFX1 EFC|RFX regulatory factor X1 protein-coding 9.225 5.227 7.810 6.851 7.632 4.158 6.026 2.141 0.338 4.014 0.493 7.659 10.522 4.853 0.187 5.282 9.944 7.485 11.118 11.927 10.330 14.041 23.480 23.893 23.835 6.065 8.061 11.448 21.805 12.437 14.089 3.509 4.885 15.004 11.476 14.699 10.517 6.007 4.530 3.839 3.913 1.477 2.276 6.026 7.659 2.114 4.201 1.205 3.936 3121 chr16 32685592 32701406 + 0 NA Intergenic Intergenic -6049 NR_110886 24150 Hs.592038 NM_015369 ENSG00000183632 TP53TG3 P53TG3|TP53TG3A|TP53TG3E|TP53TG3F TP53 target 3 protein-coding 0.630 0.751 0.687 0.083 2.693 1.204 0.220 0.075 0.098 0.167 0.089 0.667 2.648 0.625 0.100 0.303 0.174 0.191 0.158 1.140 0.813 1.271 0.506 0.447 0.309 0.546 0.693 5.659 7.443 0.506 0.198 0.161 0.232 0.099 0.176 0.121 0.139 0.280 0.321 4.270 0.034 0.042 0.050 0.220 0.667 0.105 1.538 0.056 0.054 3427 chr17 43655835 43664869 + 0 NA Intergenic Intergenic 18876 NR_026901 644172 Hs.448859 NR_026901 MAPK8IP1P2 - mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2 pseudo 5.801 4.388 nan 9.627 5.776 2.877 4.223 3.429 0.930 3.589 1.614 5.107 15.153 4.214 0.198 9.546 8.881 4.781 6.486 11.986 nan 9.222 4.678 15.998 16.315 4.507 5.807 12.165 16.061 8.906 8.789 8.748 12.140 4.944 4.691 3.518 3.181 3.879 2.613 8.045 5.525 1.171 4.816 4.223 5.107 3.374 2.462 4.381 1.076 2624 chr14 59156513 59182777 + 0 NA Intergenic Intergenic 64090 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding nan nan 1.867 0.950 0.333 0.130 0.960 0.324 0.177 0.244 0.296 0.309 0.429 0.041 0.116 0.332 0.211 0.318 0.407 0.810 0.714 2.267 0.877 nan 0.394 0.953 1.339 0.840 nan 1.007 0.432 0.173 0.259 5.226 4.842 0.966 4.131 1.061 0.700 7.694 0.708 2.471 0.726 0.960 0.309 0.097 0.144 0.048 1.833 1470 chr11 65307726 65338765 + 0 NA intron (NM_001164266, intron 1 of 26) intron (NM_001164266, intron 1 of 26) 2454 NM_001130144 4054 Hs.289019 NM_021070 ENSG00000168056 LTBP3 DASS|LTBP-3|LTBP2|STHAG6|pp6425 latent transforming growth factor beta binding protein 3 protein-coding nan 1.623 1.190 1.427 1.573 0.828 1.418 0.543 0.146 0.825 0.438 2.130 2.881 1.761 0.127 1.633 2.984 1.352 2.217 3.064 3.261 2.187 0.726 1.800 1.992 1.395 2.270 3.669 4.106 1.442 1.159 1.201 1.870 1.077 1.101 0.685 1.564 1.688 0.819 1.906 1.776 0.260 0.575 1.418 2.130 0.508 0.734 0.696 0.359 5330 chr3 16277781 16290264 + 0 NA Intergenic AluJb|SINE|Alu 22474 NM_001047434 285381 Hs.388087 NM_206831 ENSG00000154813 DPH3 DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2 diphthamide biosynthesis 3 protein-coding nan 0.765 1.796 0.099 0.089 0.065 0.132 0.126 0.112 0.101 0.073 0.029 0.330 0.044 0.076 0.294 0.335 0.504 0.489 0.398 0.472 0.560 0.214 0.122 0.179 1.858 2.091 0.253 0.307 6.375 5.366 0.356 0.367 0.077 0.093 1.205 1.506 0.656 0.470 0.015 0.057 0.023 0.037 0.132 0.029 0.123 0.204 0.135 0.682 4596 chr2 172914181 172969334 + 0 NA intron (NM_199227, intron 6 of 9) intron (NM_199227, intron 6 of 9) -8451 NM_178120 1745 Hs.407015 NM_178120 ENSG00000144355 DLX1 - distal-less homeobox 1 protein-coding 1.373 0.907 1.100 1.060 12.644 6.522 2.280 0.979 0.181 0.534 0.394 0.988 1.770 1.605 0.102 0.316 0.259 0.809 1.536 0.895 0.819 5.067 1.848 0.513 0.530 1.076 1.552 0.966 1.282 1.102 1.073 0.539 0.709 2.145 0.938 0.304 0.597 2.838 1.489 0.190 0.142 0.145 0.036 2.280 0.988 0.301 0.245 0.245 0.100 1840 chr12 12670577 12677597 + 0 NA 5' UTR (NM_030640, exon 2 of 7) 5' UTR (NM_030640, exon 2 of 7) 41361 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 1.110 1.177 1.089 2.221 1.479 0.549 0.308 0.097 0.024 1.912 0.529 2.109 0.494 0.134 0.091 0.366 0.222 0.330 0.794 nan 1.236 11.051 5.558 0.756 0.671 0.856 1.218 1.339 0.922 0.338 0.161 0.256 0.275 1.130 2.054 0.388 0.717 2.921 1.202 0.071 0.317 0.152 0.067 0.308 2.109 0.014 0.159 0.070 0.282 8380 chrX 40001128 40036982 + 0 NA intron (NM_001123384, intron 1 of 13) intron (NM_001123384, intron 1 of 13) 17527 NM_001123383 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 3.618 3.066 3.177 3.294 2.127 1.171 2.467 1.323 0.175 2.389 1.002 3.227 4.010 1.619 0.054 1.221 1.396 2.131 3.465 5.866 4.812 3.258 1.052 3.169 3.181 0.772 1.040 4.459 6.028 4.734 6.376 1.571 1.887 2.588 1.975 1.445 2.620 1.374 0.752 3.530 1.740 0.563 2.130 2.467 3.227 0.979 1.366 1.110 1.289 869 chr1 217249346 217264337 + 0 NA intron (NM_001134285, intron 1 of 8) MIR3|SINE|MIR 6146 NM_206595 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR3|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 0.879 2.156 1.555 2.893 0.931 0.449 0.571 0.352 0.195 1.705 0.880 0.824 nan 0.050 0.083 0.965 1.820 0.728 0.999 1.690 1.864 nan 1.122 0.555 0.559 0.605 nan 2.958 2.384 0.685 0.584 1.151 2.405 2.271 1.656 0.238 0.346 2.756 1.471 0.019 0.160 0.517 0.122 0.571 0.824 0.052 2.643 2.085 0.082 991 chr10 1765201 1782959 + 0 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) 5590 NM_018702 105 Hs.586663 NM_018702 ENSG00000185736 ADARB2 ADAR3|RED2 adenosine deaminase, RNA specific B2 (inactive) protein-coding 0.867 0.511 1.019 0.421 1.018 0.357 0.410 0.105 0.109 1.637 1.034 3.462 1.167 0.024 0.064 2.630 3.621 0.129 0.218 2.472 2.625 0.220 0.148 0.429 0.431 0.125 0.199 1.733 2.976 0.209 0.149 3.116 6.829 0.036 0.033 0.284 0.400 0.662 0.532 0.163 0.526 0.022 0.366 0.410 3.462 0.286 0.813 4.168 0.046 615 chr1 161122628 161130321 + 0 NA intron (NM_016406, intron 1 of 5) AluSx|SINE|Alu -2780 NM_001319847 27005 Hs.8015 NM_012475 ENSG00000143258 USP21 USP16|USP23 ubiquitin specific peptidase 21 protein-coding 5.352 nan 4.464 3.790 3.990 2.282 4.767 2.313 0.399 2.894 1.396 4.502 7.735 3.342 0.193 6.269 6.277 6.064 8.862 7.704 nan 8.123 5.502 7.501 7.636 4.879 5.942 7.164 nan 5.451 4.873 7.899 8.981 6.062 6.053 6.803 6.303 3.646 2.251 2.718 4.720 0.808 1.506 4.767 4.502 1.022 2.519 2.612 1.683 2246 chr13 26432623 26444109 + 0 NA intron (NM_016529, intron 33 of 36) intron (NM_016529, intron 33 of 36) 186832 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 0.679 0.844 0.732 0.191 0.253 0.090 0.067 0.118 0.083 0.098 0.145 0.351 0.363 0.029 0.085 0.861 0.792 8.463 nan 0.396 0.609 0.146 0.086 0.073 0.082 0.158 0.327 0.771 0.662 0.561 0.231 0.492 0.797 0.033 0.062 0.405 0.710 1.216 0.727 0.044 0.085 0.042 0.067 0.351 0.025 0.071 0.096 0.129 476 chr1 119582718 119596047 + 0 NA promoter-TSS (NR_126447) promoter-TSS (NR_126447) -646 NR_126447 104472716 Hs.689536 NR_126447 WARS2-IT1 - WARS2 intronic transcript 1 ncRNA nan 0.838 1.083 0.121 0.248 0.126 0.126 0.251 0.181 0.059 0.049 0.072 0.336 0.049 0.170 0.387 0.444 0.314 0.401 0.292 nan 0.179 0.113 0.545 0.609 3.748 4.374 0.297 0.303 0.329 0.128 0.692 0.673 0.057 0.081 0.436 1.058 0.717 0.502 0.047 0.093 0.012 0.139 0.126 0.072 0.036 0.046 0.329 0.326 1626 chr11 110580514 110585087 + 0 NA promoter-TSS (NM_001258415) promoter-TSS (NM_001258415) -27 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 1.969 2.063 1.894 0.612 0.810 0.316 2.414 1.159 0.035 0.410 0.753 1.045 7.440 0.071 0.135 8.680 nan 1.932 2.096 4.549 4.019 2.054 0.605 9.838 9.804 2.828 nan 1.075 2.186 1.017 1.618 5.548 12.232 4.337 2.776 1.469 2.540 1.202 0.705 8.002 0.115 2.068 0.863 2.414 1.045 0.233 0.054 4.896 0.836 6146 chr5 3917965 3922946 + 0 NA Intergenic L1MA3|LINE|L1 324287 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 0.407 0.844 0.972 0.136 0.215 0.162 0.154 0.222 0.130 0.188 0.269 0.128 0.543 0.073 4.058 2.759 8.822 nan 0.264 0.404 0.063 0.102 0.037 0.066 0.216 0.312 nan 0.151 nan 0.199 1.811 3.425 0.068 0.061 0.091 0.158 0.247 nan 0.033 0.054 0.052 0.154 0.128 0.062 1.264 0.024 3046 chr16 7882989 7900253 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie 508870 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 0.636 nan 0.647 0.069 0.225 0.111 0.052 0.107 0.094 0.498 0.360 0.170 0.242 0.006 0.099 0.584 0.480 0.050 0.054 0.133 0.127 nan 0.240 0.131 0.115 0.137 nan 0.153 0.378 0.572 0.207 0.160 0.245 0.332 0.099 0.390 1.030 2.632 1.041 0.016 0.145 0.028 0.344 0.052 0.170 0.041 0.069 0.172 1835 chr12 12096563 12110286 + 0 NA Intergenic Intergenic -120454 NM_138723 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 1.034 0.943 1.580 2.231 0.531 0.176 0.128 0.049 0.059 0.782 0.268 0.244 1.608 0.024 0.117 1.502 2.182 0.421 0.593 nan 1.044 4.383 0.964 0.447 0.594 0.367 0.628 6.565 6.658 0.930 0.766 1.180 1.728 0.198 0.201 0.225 0.412 2.076 0.934 1.621 0.105 0.021 0.018 0.128 0.244 0.028 0.451 0.962 0.080 5910 chr4 56260703 56265310 + 0 NA intron (NM_018475, intron 1 of 5) intron (NM_018475, intron 1 of 5) 926 NR_073070 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding nan 2.671 2.064 4.825 3.401 1.883 2.465 4.318 0.408 2.382 1.098 3.011 6.628 2.244 0.132 4.890 4.800 4.350 7.109 4.747 4.010 6.820 2.285 7.954 8.276 6.087 7.570 7.701 10.905 4.214 4.709 2.294 6.620 3.218 3.208 2.867 4.478 8.282 4.376 3.603 4.641 0.743 2.237 2.465 3.011 0.656 5.019 1.435 0.808 1217 chr10 115467914 115474374 + 0 NA intron (NM_001267058, intron 1 of 5) intron (NM_001267058, intron 1 of 5) 2040 NM_001267058 840 Hs.9216 NM_001227 ENSG00000165806 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7 protein-coding 0.619 nan 0.508 0.359 0.372 0.276 0.514 0.128 0.122 0.227 0.103 0.129 0.937 0.067 0.093 3.354 3.694 11.734 9.387 0.160 0.204 3.549 1.146 2.591 2.567 0.840 1.258 2.190 3.670 0.244 0.100 3.164 4.252 0.129 0.304 0.123 0.127 0.360 0.316 0.060 0.096 0.015 0.121 0.514 0.129 0.029 0.063 3.705 0.039 2750 chr14 95973290 95992817 + 0 NA Intergenic CpG 16913 NR_003002 677768 Hs.448753 NR_003002 ENSG00000252481 SCARNA13 U93 small Cajal body-specific RNA 13 ncRNA 1.325 1.142 nan 2.743 1.952 1.135 1.265 1.574 0.096 0.237 0.205 2.724 5.900 0.229 0.093 1.657 2.159 0.249 0.307 2.617 2.857 1.360 0.383 0.814 0.710 0.355 0.890 1.589 1.562 0.705 0.453 2.684 3.312 0.364 0.436 0.284 0.515 nan 0.574 3.785 1.478 0.087 0.256 1.265 2.724 0.234 0.031 2.609 0.032 1850 chr12 14994013 15008468 + 0 NA Intergenic Intergenic -4827 NM_021071 420 Hs.591158 NM_021071 ENSG00000111339 ART4 ARTC4|CD297|DO|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 1.026 0.675 1.081 0.254 0.306 0.090 0.132 0.578 0.034 0.169 0.148 0.058 0.476 0.094 0.105 0.176 0.160 3.506 10.932 nan 0.605 0.295 0.149 0.289 0.309 0.909 1.229 0.476 0.416 0.500 0.247 0.204 0.325 0.070 0.043 0.463 1.842 0.406 0.437 0.100 0.099 0.006 0.184 0.132 0.058 0.034 0.047 0.062 0.317 3396 chr17 38458979 38508014 + 0 NA intron (NM_001145301, intron 1 of 8) intron (NM_001145301, intron 1 of 8) 9023 NM_001145301 5914 Hs.654583 NM_000964 ENSG00000131759 RARA NR1B1|RAR retinoic acid receptor alpha protein-coding nan 1.636 0.849 0.774 1.780 0.964 1.204 1.762 0.350 0.690 0.565 1.455 2.630 0.595 0.081 1.427 2.520 0.992 1.972 nan 2.226 1.102 0.463 1.832 1.921 1.293 1.803 2.722 3.261 nan 1.070 0.585 0.824 0.535 0.544 1.178 2.289 1.551 0.905 1.092 0.586 0.174 1.610 1.204 1.455 0.510 1.764 0.218 0.567 1013 chr10 10581641 10586391 + 0 NA intron (NM_001326319, intron 1 of 16) intron (NM_001326319, intron 1 of 16) 79538 NM_001326321 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP, Elav-like family member 2 protein-coding nan 0.597 0.457 0.110 0.126 0.102 0.217 0.079 0.101 0.102 0.069 0.041 0.273 0.046 0.144 2.920 3.053 10.443 6.722 0.201 0.304 0.463 0.304 0.642 0.638 0.563 0.978 0.108 0.146 0.183 0.062 0.416 0.755 0.027 0.045 0.232 0.336 0.077 0.140 0.011 0.074 0.051 0.217 0.041 0.041 0.043 0.229 0.051 1693 chr11 119223028 119253237 + 0 NA intron (NM_001243759, intron 1 of 11) intron (NM_001243759, intron 1 of 11) -3240 NM_171997 9099 Hs.524085 NM_004205 ENSG00000036672 USP2 UBP41|USP9 ubiquitin specific peptidase 2 protein-coding 1.379 1.359 1.350 0.484 0.627 0.341 0.723 0.175 0.079 0.488 0.351 0.621 1.536 0.361 0.090 0.832 nan 0.862 1.234 1.100 1.147 2.488 1.011 0.619 0.736 1.474 nan 2.114 2.725 2.180 1.982 1.824 2.458 1.273 1.094 1.774 4.212 1.546 0.971 1.378 0.639 0.139 0.245 0.723 0.621 0.341 0.396 1.171 1.102 316 chr1 55006953 55050163 + 0 NA intron (NM_147161, intron 1 of 15) SVA_F|Other|Other 14751 NM_147161 26027 Hs.745173 NM_015547 ENSG00000162390 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 1.975 1.545 2.304 0.815 0.394 0.186 0.465 0.196 0.123 0.312 0.188 0.328 0.723 0.457 0.128 0.604 1.055 0.315 0.529 1.001 1.012 1.677 0.501 0.640 0.613 1.062 1.435 1.232 1.849 0.734 0.623 0.431 0.568 0.732 0.798 1.297 nan 1.108 0.736 0.557 0.209 0.144 0.130 0.465 0.328 0.451 0.205 0.179 1.886 7369 chr7 90580226 90603381 + 0 NA intron (NM_001287137, intron 7 of 12) AluSx|SINE|Alu 252673 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding nan 0.779 nan 0.353 0.369 0.105 0.763 1.237 0.236 0.346 0.398 0.398 0.755 0.083 0.185 0.414 0.280 0.215 0.373 0.635 0.971 3.726 1.495 0.540 0.424 1.219 1.583 0.505 0.651 0.848 0.435 0.217 0.338 1.341 1.309 0.658 nan 1.441 0.747 0.274 0.172 0.254 0.319 0.763 0.398 0.093 0.777 0.103 0.183 2649 chr14 64966451 64978157 + 0 NA promoter-TSS (NM_001304507) promoter-TSS (NM_001304507) -373 NM_001304508 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 6.239 nan 4.848 4.729 4.646 2.310 3.970 4.154 0.518 1.846 0.995 4.211 7.317 3.950 0.169 3.144 3.831 4.991 7.416 8.134 7.004 3.912 1.724 nan 7.254 3.635 4.160 5.099 nan 5.404 7.042 1.754 4.002 6.240 6.341 3.112 3.504 3.536 1.885 6.863 5.927 1.704 3.602 3.970 4.211 0.956 2.148 1.531 1.917 7188 chr7 19134467 19157736 + 0 NA Intergenic CpG 11194 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding nan 0.862 nan 0.241 0.178 0.108 0.599 5.129 0.451 0.290 0.309 0.080 1.786 1.816 0.159 nan 0.202 3.627 3.923 0.941 0.957 1.145 0.330 2.205 2.308 0.963 1.412 0.370 0.395 1.000 0.897 0.076 0.102 3.056 2.264 0.144 0.372 0.738 0.666 0.019 0.181 0.688 0.030 0.599 0.080 0.048 0.381 0.017 0.079 5242 chr22 31736305 31744545 + 0 NA exon (NM_032050, exon 1 of 4) exon (NM_032050, exon 1 of 4) 1824 NM_032050 23598 Hs.731398 NM_014323 ENSG00000100105 PATZ1 MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23 POZ/BTB and AT hook containing zinc finger 1 protein-coding nan 3.204 6.517 4.729 5.495 2.209 3.813 0.981 0.233 1.805 1.127 10.048 10.078 2.543 0.114 6.793 7.435 4.966 nan 9.220 7.931 3.544 1.290 5.944 5.632 2.958 nan 7.790 11.503 5.515 5.374 4.007 9.051 2.960 2.484 2.432 nan 1.966 0.874 3.687 2.099 0.875 4.793 3.813 10.048 1.237 2.152 3.371 1.181 5879 chr4 41744545 41802556 + 0 NA Intergenic Intergenic -22563 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B NBLST2|NBPhox|PMX2B paired like homeobox 2b protein-coding 1.372 nan nan 0.120 0.216 0.097 0.071 0.084 0.058 0.101 0.147 0.050 0.237 0.040 0.060 0.306 0.163 0.161 0.234 0.278 0.233 0.096 0.085 0.118 0.119 0.158 0.259 0.223 0.265 1.712 1.458 0.122 0.189 0.042 0.046 2.518 5.925 0.675 0.762 0.025 0.283 0.005 2.678 0.071 0.050 0.121 0.049 0.026 2.793 5507 chr3 121901217 121909881 + 0 NA intron (NM_001178065, intron 1 of 6) L2c|LINE|L2 2368 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1 calcium sensing receptor protein-coding 0.765 nan 0.570 0.302 0.189 0.184 0.118 0.127 0.093 0.261 0.203 0.304 4.615 0.025 0.045 0.360 0.223 0.152 0.309 0.403 0.505 0.178 0.138 0.286 0.291 0.142 nan 0.583 0.444 0.610 0.340 0.192 0.359 0.479 0.244 0.172 0.254 2.006 1.195 7.187 5.454 0.066 0.127 0.118 0.304 0.177 0.027 0.044 2757 chr14 99732075 99741792 + 0 NA intron (NM_138576, intron 1 of 3) CpG 1117 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha B-cell CLL/lymphoma 11B protein-coding 1.037 0.629 0.719 0.415 5.380 2.613 6.049 0.131 0.033 0.080 0.196 6.347 12.826 0.196 0.068 2.510 3.578 0.067 0.111 14.344 10.945 0.385 0.141 2.652 2.499 3.386 4.639 4.698 6.288 3.429 4.166 2.082 5.319 0.109 0.192 4.404 6.166 0.252 0.251 5.081 0.686 0.030 5.659 6.049 6.347 2.657 0.021 2.785 2.402 7908 chr8 124545388 124554777 + 0 NA intron (NM_001242463, intron 1 of 6) intron (NM_001242463, intron 1 of 6) 3411 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding nan nan nan 7.929 1.551 0.821 1.290 0.855 0.155 0.813 0.235 1.836 nan 0.174 0.060 1.580 2.942 0.843 1.688 6.443 4.890 12.731 7.410 nan nan 0.266 0.442 4.180 7.181 0.781 0.650 1.669 2.579 2.536 3.293 0.658 1.100 2.901 1.610 1.150 6.515 0.465 3.973 1.290 1.836 0.181 0.666 2.402 0.212 5052 chr20 62669769 62689153 + 0 NA 3' UTR (NM_018419, exon 2 of 2) 3' UTR (NM_018419, exon 2 of 2) 1518 NM_018419 54345 Hs.8619 NM_018419 ENSG00000203883 SOX18 HLTRS|HLTS SRY-box 18 protein-coding 1.621 1.644 3.473 0.289 0.769 0.267 0.219 0.151 0.108 0.238 0.193 0.838 0.942 0.798 0.096 0.962 nan 0.572 0.764 1.102 1.084 1.373 0.417 0.953 1.158 2.740 3.944 0.506 0.589 0.632 0.418 0.677 0.629 0.341 0.302 0.252 0.382 0.715 0.574 0.796 0.238 0.054 0.098 0.219 0.838 0.801 1.282 0.101 0.039 4435 chr2 95957257 95977369 + 0 NA intron (NM_013434, intron 1 of 8) MIRb|SINE|MIR 4241 NM_013434 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 1.382 2.286 4.871 0.831 0.701 0.294 1.952 0.064 0.040 0.735 0.477 1.378 6.563 0.032 0.057 1.454 2.696 0.421 0.554 2.152 1.950 2.253 0.588 1.489 1.446 0.290 0.461 0.510 0.663 0.754 0.891 1.043 1.240 0.893 0.677 0.606 0.948 0.928 0.547 5.545 1.598 0.309 0.071 1.952 1.378 1.516 0.602 0.799 0.234 3179 chr16 75271297 75302661 + 0 NA intron (NM_001170720, intron 1 of 7) intron (NM_001170720, intron 1 of 7) -1453 NM_014567 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 1.958 1.137 nan 0.820 0.909 0.327 1.550 1.624 0.256 0.350 0.162 1.211 2.048 0.529 0.068 1.479 2.301 0.959 1.657 1.616 1.528 1.040 0.441 2.008 1.941 1.872 2.541 1.341 2.188 2.719 2.819 0.704 0.980 0.487 0.489 0.810 1.175 1.467 0.720 0.946 0.578 0.134 0.452 1.550 1.211 1.091 0.951 0.214 0.162 5382 chr3 56809766 56822176 + 0 NA intron (NM_001128615, intron 4 of 12) intron (NM_001128615, intron 4 of 12) -6226 NM_001128616 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 1.391 1.379 nan 0.376 0.387 0.245 0.140 0.179 0.090 0.227 0.348 0.722 2.045 0.053 0.100 0.537 0.543 0.422 0.968 0.641 0.743 1.107 0.380 0.383 0.339 0.594 1.228 3.366 2.876 nan 0.315 0.396 0.767 0.685 0.615 0.174 0.286 1.802 1.044 1.578 0.570 0.129 0.013 0.140 0.722 0.205 2.950 0.312 0.102 2611 chr14 57460922 57479977 + 0 NA Intergenic Intergenic 190548 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 2.931 nan 2.395 0.982 0.549 0.336 0.397 0.099 0.094 0.090 0.150 0.872 0.570 0.046 0.119 0.366 0.248 0.303 0.384 0.502 0.531 1.963 0.435 0.486 0.507 0.132 0.203 1.091 0.997 4.153 4.032 0.724 1.564 0.796 0.773 4.105 11.497 nan 0.567 0.041 0.095 0.114 0.674 0.397 0.872 0.132 0.096 1.474 2.068 2921 chr15 67437946 67447711 + 0 NA intron (NM_001145103, intron 1 of 8) (GAAA)n|Simple_repeat|Simple_repeat 12469 NM_001145103 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 0.763 1.088 nan 0.278 0.351 0.331 0.722 1.354 0.388 0.143 0.186 0.246 0.897 0.244 0.105 0.281 0.297 7.451 13.869 0.209 0.371 nan 0.199 0.323 0.287 0.351 0.561 0.906 0.900 0.448 0.229 0.251 0.462 0.407 0.578 0.162 0.247 0.357 0.334 0.017 0.147 0.059 0.089 0.722 0.246 0.109 0.177 0.225 0.050 3783 chr18 45788264 45884740 + 0 NA intron (NM_001318841, intron 2 of 4) AluY|SINE|Alu 99291 NM_001318841 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding nan 1.653 0.990 2.157 0.582 0.292 1.882 0.060 0.048 0.291 0.197 1.126 4.569 0.038 0.072 0.497 0.631 0.744 1.325 2.198 2.589 3.247 0.995 0.183 0.203 0.247 0.401 3.210 2.346 0.756 0.656 0.284 0.385 1.903 2.127 0.210 nan 5.365 2.603 3.396 1.128 0.487 0.281 1.882 1.126 0.144 2.107 0.160 0.069 3604 chr17 78537794 78630349 + 0 NA intron (NM_001163034, intron 1 of 29) intron (NM_001163034, intron 1 of 29) 65446 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 1.181 1.069 1.232 3.309 0.473 0.268 0.679 0.158 0.136 0.325 0.225 0.657 1.020 0.112 0.122 0.583 0.740 0.345 0.431 1.287 1.381 0.623 0.210 0.382 0.384 nan 1.031 3.734 3.902 1.083 0.764 0.578 0.673 0.479 0.532 1.352 3.141 nan 0.940 0.220 0.751 0.077 0.172 0.679 0.657 0.085 1.350 0.177 1.311 3634 chr18 901429 912097 + 0 NA intron (NM_001099733, intron 2 of 4) CpG 1566 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 3.912 1.734 1.001 7.570 0.687 0.330 0.477 0.096 0.046 1.438 0.622 1.102 20.744 0.133 0.129 0.239 0.126 0.079 0.067 3.942 3.246 nan 2.102 0.248 0.232 1.946 nan 4.425 4.000 nan 0.752 0.082 0.104 2.168 1.954 0.157 nan nan 3.094 9.888 1.963 0.411 0.650 0.477 1.102 0.172 4.997 0.059 5518 chr3 125036529 125045329 + 0 NA intron (NM_021964, intron 3 of 8) AluY|SINE|Alu 53269 NM_021964 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 1.125 nan 1.107 0.189 0.392 0.200 0.189 0.901 0.293 0.231 0.314 0.287 0.272 0.024 0.093 0.401 0.375 0.398 0.826 0.650 0.850 0.616 0.322 0.401 0.361 4.971 nan 0.287 0.370 1.386 0.929 0.215 0.378 0.163 0.182 0.648 1.473 0.356 0.340 0.442 0.141 0.054 0.640 0.189 0.287 0.034 0.023 0.079 0.180 6608 chr6 10132106 10155344 + 0 NA Intergenic L1MC1|LINE|L1 -268826 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 0.880 nan 0.968 0.351 0.328 0.138 0.303 0.087 0.118 0.067 0.170 0.422 0.225 0.037 0.134 0.457 0.323 0.322 0.574 0.415 0.486 0.871 0.295 0.294 0.300 0.212 0.304 0.098 0.124 0.377 0.159 0.137 0.265 2.611 2.476 0.202 0.278 0.780 0.537 0.031 0.123 0.498 0.186 0.303 0.422 0.034 0.494 0.060 0.053 4532 chr2 144066125 144084620 + 0 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 188473 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 0.848 nan 0.844 0.085 0.238 0.110 0.138 0.154 0.121 0.103 0.107 0.159 0.348 0.059 0.054 0.295 0.177 0.167 0.288 0.185 0.270 0.159 0.079 0.207 0.216 3.800 3.603 0.283 0.325 0.426 0.181 0.124 0.180 0.041 0.030 0.371 0.565 0.251 0.312 0.048 0.024 0.015 0.078 0.138 0.159 0.087 0.027 0.037 0.054 4238 chr2 17718823 17743551 + 0 NA intron (NM_003385, intron 1 of 3) MIRb|SINE|MIR 9380 NM_003385 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 0.635 0.569 0.789 0.252 0.198 0.149 0.264 0.081 0.071 0.075 0.094 0.044 2.270 0.061 0.105 1.514 1.606 5.232 8.074 0.267 0.366 0.223 0.107 0.570 0.673 1.902 2.445 0.592 nan 1.144 1.103 2.240 2.445 0.047 0.073 0.212 nan 0.287 0.321 0.956 0.406 0.019 0.009 0.264 0.044 0.004 0.024 1.182 0.139 7170 chr7 14256989 14296127 + 0 NA intron (NM_145695, intron 22 of 23) intron (NM_145695, intron 22 of 23) -245508 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding nan 1.038 nan 0.142 0.524 0.274 0.212 0.171 0.095 0.245 0.217 0.337 0.443 0.053 0.154 nan 0.300 6.138 5.955 0.485 0.664 0.654 0.309 0.339 0.373 0.776 1.001 0.390 0.413 0.433 0.159 0.103 0.165 0.258 0.399 0.224 0.299 0.478 0.402 0.052 0.096 0.061 0.087 0.212 0.337 0.017 0.073 0.023 0.038 5398 chr3 71347623 71360206 + 0 NA promoter-TSS (NM_001244812) promoter-TSS (NM_001244812) -3 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 1.669 0.756 1.901 0.294 0.649 0.448 0.264 0.077 0.039 0.474 0.204 0.983 0.500 0.060 0.075 1.274 0.940 3.845 nan 0.784 0.876 0.805 0.451 1.314 1.282 0.087 0.154 0.953 1.453 11.655 10.938 0.362 0.855 0.273 0.277 0.283 nan 0.677 0.449 0.036 0.213 0.068 1.313 0.264 0.983 0.285 0.113 0.226 0.255 1544 chr11 78644065 78666335 + 0 NA intron (NM_001098816, intron 6 of 33) MIRc|SINE|MIR -369291 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding nan 1.184 0.758 0.615 1.756 0.937 0.623 0.098 0.084 0.185 0.129 1.455 0.567 0.069 0.100 1.624 1.772 0.191 0.321 3.559 3.959 1.894 0.449 1.274 1.278 0.317 0.538 2.521 2.500 1.021 0.770 1.463 2.761 1.664 1.240 0.301 0.825 1.164 0.994 0.259 0.308 0.545 1.704 0.623 1.455 1.520 0.060 1.895 0.189 4556 chr2 157187145 157209168 + 0 NA Intergenic CpG -8869 NM_006186 4929 Hs.563344 NM_006186 ENSG00000153234 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4 group A member 2 protein-coding nan 2.582 nan 2.916 4.081 2.334 2.250 1.776 0.240 1.559 0.849 2.251 9.236 1.390 0.100 2.087 2.785 4.403 5.342 2.441 1.904 3.002 1.396 5.565 6.125 3.840 3.970 2.836 3.829 1.177 1.191 0.704 1.352 3.096 2.468 2.558 4.538 0.912 0.720 2.083 1.227 0.525 1.264 2.250 2.251 0.711 2.164 0.473 1.845 1047 chr10 15900225 15909680 + 0 NA Intergenic AluSq|SINE|Alu -2420 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 FAM188A C10orf97|CARP|DERP5|MST126|MSTP126|my042 family with sequence similarity 188 member A protein-coding nan 1.922 0.645 2.708 0.608 0.187 0.230 1.058 0.103 0.764 0.259 0.913 1.893 0.239 0.075 1.221 1.204 1.341 1.592 0.943 0.722 10.306 3.407 0.425 0.428 0.965 1.190 1.377 1.140 0.706 0.663 0.470 0.759 1.353 2.142 0.371 0.976 1.627 0.882 0.099 0.245 0.233 0.126 0.230 0.913 0.031 1.312 0.198 0.240 3228 chr17 499361 513280 + 0 NA intron (NM_001128159, intron 11 of 21) intron (NM_001128159, intron 11 of 21) 111776 NM_001128159 55275 Hs.461819 NM_018289 ENSG00000141252 VPS53 HCCS1|PCH2E|hVps53L|pp13624 VPS53, GARP complex subunit protein-coding 1.531 1.151 1.362 0.165 0.296 0.150 0.220 0.119 0.046 0.163 0.065 0.108 0.247 0.071 0.116 0.240 0.297 0.310 0.442 0.403 0.391 1.461 0.342 0.342 0.430 1.156 1.871 0.189 0.286 0.644 0.584 0.153 0.281 0.077 0.099 2.907 9.866 0.320 0.310 0.098 0.398 0.052 0.068 0.220 0.108 0.147 0.081 0.050 5.377 1405 chr11 45906524 45923146 + 0 NA intron (NM_005456, intron 1 of 11) intron (NM_005456, intron 1 of 11) 7788 NM_005456 9479 Hs.234249 NM_005456 ENSG00000121653 MAPK8IP1 IB1|JIP-1|JIP1|PRKM8IP mitogen-activated protein kinase 8 interacting protein 1 protein-coding nan 2.599 0.891 1.570 1.698 0.801 3.274 0.139 0.005 1.594 0.772 2.835 2.921 0.668 0.083 2.158 3.601 0.593 0.839 4.760 4.938 3.458 1.713 0.436 0.432 2.100 2.755 1.160 1.767 1.675 1.990 1.043 1.713 2.092 1.427 1.301 nan 2.023 1.131 1.172 3.513 0.541 0.688 3.274 2.835 0.819 1.930 0.464 0.273 2678 chr14 75695879 75710155 + 0 NA Intergenic AluSc5|SINE|Alu -42464 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 2.050 1.583 1.262 0.336 1.075 0.496 0.709 0.224 0.289 0.276 0.211 0.628 1.348 0.160 0.143 0.384 0.496 0.343 0.572 1.232 1.099 0.510 0.261 0.564 0.599 0.530 0.944 1.391 nan 1.215 1.032 0.316 0.321 0.518 0.454 0.567 1.141 2.670 nan 0.125 1.225 0.066 0.056 0.709 0.628 0.401 0.185 0.076 0.565 4379 chr2 60748293 60785299 + 0 NA intron (NM_138559, intron 2 of 4) AT_rich|Low_complexity|Low_complexity 13837 NM_018014 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 B-cell CLL/lymphoma 11A protein-coding 2.556 0.620 nan 1.090 1.178 0.558 1.564 0.075 0.037 0.964 0.615 0.698 2.784 0.138 0.110 1.037 1.126 4.756 5.213 4.915 3.977 nan 0.128 1.795 1.819 2.473 3.165 1.690 2.328 3.710 4.352 0.795 1.718 1.449 1.088 2.308 3.153 1.105 0.906 0.900 4.180 0.288 2.726 1.564 0.698 0.957 0.937 0.858 1.397 1050 chr10 16683413 16700320 + 0 NA intron (NM_152724, intron 7 of 7) intron (NM_152724, intron 7 of 7) -127862 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding nan 0.763 1.233 0.319 0.581 0.293 0.061 0.246 0.191 0.076 0.096 0.596 0.247 0.019 0.106 1.442 1.244 4.599 5.955 0.357 0.380 0.769 0.395 0.113 0.117 0.626 0.672 0.391 0.385 0.153 0.089 0.282 0.416 0.335 0.412 0.750 2.072 0.387 0.374 0.010 0.074 0.090 0.132 0.061 0.596 0.060 0.158 0.248 634 chr1 164526305 164539296 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 4203 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 2.145 nan 2.744 3.319 2.751 1.204 2.284 1.544 0.133 1.442 1.182 1.679 7.820 0.176 0.125 1.283 2.336 2.368 3.941 5.781 nan 2.441 1.057 0.917 0.846 4.820 5.638 2.257 nan 1.910 1.709 1.091 2.206 2.580 1.991 2.687 3.851 1.826 0.877 1.092 3.606 0.602 1.075 2.284 1.679 0.060 0.829 0.953 1.724 5455 chr3 108783633 108793283 + 0 NA intron (NM_014429, intron 9 of 27) intron (NM_014429, intron 9 of 27) -31845 NR_144461 100506506 Hs.278908 NR_144461 MORC1-AS1 - MORC1 antisense RNA 1 ncRNA nan nan 0.644 0.092 0.383 0.132 0.131 0.106 0.133 0.083 0.092 0.297 0.194 0.022 0.127 3.872 4.013 7.717 2.021 0.311 0.334 0.266 0.105 0.494 0.450 0.176 0.204 0.210 0.229 1.452 0.613 1.029 1.543 0.065 0.037 0.265 0.348 0.515 0.524 0.023 0.083 0.020 0.017 0.131 0.297 0.010 0.021 0.697 0.038 2831 chr15 31584199 31604666 + 0 NA Intergenic Intergenic -24626 NM_001302461 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 1.521 nan nan 1.374 3.368 1.689 1.709 0.139 0.047 2.369 1.311 3.785 3.516 0.048 0.053 4.659 6.700 0.386 0.545 4.691 4.818 4.026 1.304 0.703 0.665 0.450 0.682 0.694 1.430 6.160 7.245 2.117 2.647 4.697 2.984 0.959 1.942 0.535 0.311 0.889 1.034 1.769 1.913 1.709 3.785 1.370 0.392 1.723 0.744 6649 chr6 20400316 20410256 + 0 NA intron (NM_001243076, intron 1 of 6) intron (NM_001243076, intron 1 of 6) 1376 NM_001243076 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 6.320 2.433 nan 4.042 4.215 2.421 4.258 2.888 0.342 2.090 0.715 6.982 nan 3.125 0.094 6.311 4.846 5.783 nan 7.340 4.295 nan 2.385 11.982 12.573 4.945 6.598 5.766 8.882 5.870 7.170 2.065 3.922 5.873 5.099 9.785 7.965 2.222 1.531 2.904 3.083 1.168 2.562 4.258 6.982 1.299 2.199 1.304 3.793 5473 chr3 114153425 114178066 + 0 NA intron (NM_001164343, intron 8 of 11) intron (NM_001164343, intron 8 of 11) -6695 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 1.111 nan 0.713 0.302 1.552 0.678 1.302 1.299 0.175 0.838 0.493 4.300 3.918 0.092 0.068 6.998 8.245 10.474 12.929 6.588 nan 1.993 0.613 0.269 0.328 nan 2.694 0.346 0.382 2.329 1.601 2.895 4.690 0.274 0.232 0.299 0.416 2.721 1.816 3.111 0.749 0.050 0.187 1.302 4.300 0.401 0.132 2.445 0.095 2567 chr14 38022972 38037648 + 0 NA Intergenic L2c|LINE|L2 34015 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 1.113 5.151 0.862 0.115 0.185 0.153 0.130 0.122 0.175 0.112 0.090 0.090 0.431 0.237 0.111 0.189 0.143 0.181 0.380 0.271 0.338 0.350 0.157 0.224 0.257 0.704 0.889 0.288 0.379 0.818 0.337 0.131 0.248 1.186 1.136 0.287 0.514 0.692 0.590 0.046 0.383 0.189 0.118 0.130 0.090 0.033 0.152 0.060 0.149 8422 chrX 153230983 153241626 + 0 NA TTS (NR_046608) TTS (NR_046608) 515 NM_005334 3054 Hs.83634 NM_005334 ENSG00000172534 HCFC1 CFF|HCF|HCF-1|HCF1|HFC1|MRX3|PPP1R89|VCAF host cell factor C1 protein-coding 5.075 4.125 5.811 3.792 9.214 4.585 6.320 1.379 0.091 1.383 0.559 4.580 8.689 1.877 0.043 8.162 8.210 4.513 6.273 10.214 9.679 6.886 5.155 15.622 16.585 2.598 3.462 6.692 9.831 9.043 9.738 4.366 6.228 4.756 5.613 7.942 5.863 2.418 1.419 4.007 9.378 1.152 4.110 6.320 4.580 1.207 1.830 2.052 2.610 2339 chr13 72084907 72102556 + 0 NA intron (NM_004392, intron 3 of 7) intron (NM_004392, intron 3 of 7) 347599 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding nan 1.110 0.973 0.046 0.738 0.452 0.333 0.071 0.070 0.116 0.150 0.264 0.292 0.043 0.091 0.647 0.654 0.211 0.329 1.193 1.348 nan 0.202 0.126 0.140 1.083 1.381 0.376 0.427 nan 6.192 0.193 0.394 1.222 2.471 1.367 nan 0.177 0.111 0.050 0.174 0.470 4.513 0.333 0.264 1.218 0.730 0.118 1.015 5986 chr4 106463395 106492910 + 0 NA intron (NM_001242729, intron 1 of 13) intron (NM_001242729, intron 1 of 13) 4375 NM_001242729 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 0.714 nan nan 1.033 1.768 0.911 0.394 0.151 0.082 0.543 0.370 1.451 0.550 0.040 0.064 1.067 1.222 4.007 nan 0.534 0.497 0.230 0.128 1.357 1.363 0.461 nan 0.679 0.790 0.404 0.162 0.539 0.739 1.388 1.515 0.262 nan 0.829 0.570 0.013 0.139 0.250 0.132 0.394 1.451 0.003 0.085 0.306 0.131 1381 chr11 34633585 34691623 + 0 NA intron (NM_001206616, intron 1 of 8) MIRb|SINE|MIR 8593 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 0.616 1.368 nan 0.492 1.108 0.580 0.510 0.200 0.077 0.464 0.270 3.412 3.097 0.049 0.114 1.798 2.658 8.154 9.791 0.587 0.843 3.193 1.089 0.657 0.635 0.247 0.390 0.659 0.616 0.241 0.120 1.339 2.648 0.318 0.347 0.140 nan 0.564 0.563 1.067 0.238 0.129 0.044 0.510 3.412 0.028 0.203 1.611 0.141 3732 chr18 32922956 32928836 + 0 NA Intergenic Intergenic -1465 NM_001308123 7572 Hs.514802 NM_006965 ENSG00000172466 ZNF24 KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191 zinc finger protein 24 protein-coding nan 3.548 2.798 5.553 3.520 1.817 5.115 0.985 0.167 1.460 0.434 4.318 8.272 1.548 0.050 4.382 4.390 3.608 5.011 5.739 5.708 7.563 5.082 3.845 3.873 1.360 2.123 nan 17.303 3.153 3.100 1.534 2.063 5.566 6.760 2.873 2.333 8.717 4.782 4.144 3.062 0.993 1.670 5.115 4.318 0.657 2.348 0.893 0.715 8063 chr9 14336924 14355612 + 0 NA intron (NM_001190738, intron 1 of 8) CpG -32223 NM_001190737 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 2.491 0.962 0.567 0.306 0.511 1.018 0.163 1.392 0.976 1.259 2.163 0.179 0.080 0.228 0.115 1.137 1.853 1.460 1.264 2.188 0.752 0.194 0.189 47.709 48.713 0.698 0.683 0.341 0.271 0.288 0.421 0.535 0.375 0.184 0.454 8.146 4.948 2.067 0.081 0.133 0.166 0.511 1.259 0.041 0.223 0.063 0.053 189 chr1 32797469 32808516 + 0 NA Intergenic Intergenic -1152 NR_052852 65108 Hs.75061 NM_023009 ENSG00000175130 MARCKSL1 F52|MACMARCKS|MLP|MLP1|MRP MARCKS like 1 protein-coding 3.033 nan 2.809 3.067 2.209 1.082 1.803 0.335 0.087 1.876 0.862 4.113 4.266 1.641 0.113 6.365 8.449 2.741 3.589 4.428 4.499 nan 1.032 4.240 4.262 1.832 2.684 1.852 2.571 nan 2.773 2.586 5.594 1.397 0.759 2.079 2.034 1.152 nan 1.697 1.952 0.243 1.330 1.803 4.113 0.395 1.117 1.550 0.681 2849 chr15 39845175 39851431 + 0 NA Intergenic MIR|SINE|MIR -24977 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 1.569 nan nan 0.395 0.563 0.206 1.506 0.247 0.104 0.504 0.244 2.594 6.392 0.036 0.076 0.466 0.369 0.228 1.022 0.727 1.103 1.009 0.161 0.184 0.194 2.125 2.821 0.662 0.467 1.190 1.012 0.139 0.280 3.773 2.701 0.188 0.265 3.018 1.325 0.293 0.298 0.627 3.837 1.506 2.594 2.328 0.988 0.031 0.041 3796 chr18 47415093 47439514 + 0 NA intron (NM_001080467, intron 21 of 39) MIRb|SINE|MIR 86910 NR_117096 103091864 Hs.646459 NR_117096 ENSG00000267322 SNHG22 SCARNA17|SCARNA17HG small nucleolar RNA host gene 22 ncRNA nan 1.192 1.067 1.032 0.277 0.164 0.688 0.042 0.059 0.475 0.249 0.164 1.489 0.031 0.099 0.501 0.553 0.199 0.318 0.696 0.886 1.126 0.288 0.190 0.185 0.257 0.384 0.751 0.878 0.375 0.193 0.236 0.287 1.899 2.760 0.186 nan 3.825 2.216 2.480 0.345 0.487 0.417 0.688 0.164 0.113 0.095 0.032 0.040 1530 chr11 76077700 76084568 + 0 NA intron (NR_130898, intron 1 of 5) L1ME3|LINE|L1 10875 NM_004705 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding nan 0.869 2.418 1.650 0.393 0.280 0.296 0.186 0.118 0.365 0.283 2.076 0.599 0.095 0.128 0.678 0.845 0.314 0.469 1.020 1.113 1.146 0.316 2.185 2.425 1.083 1.428 4.694 4.950 0.509 0.386 0.462 0.914 0.462 0.593 0.394 1.273 1.724 1.094 0.209 0.360 0.033 0.279 0.296 2.076 0.071 4.184 0.470 0.090 5246 chr22 34458420 34474726 + 0 NA Intergenic MER46C|DNA|TcMar-Tigger -150157 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding nan 0.572 1.008 0.049 0.207 0.089 0.127 0.051 0.050 0.019 0.061 0.066 0.218 0.007 0.061 0.273 0.158 0.131 nan 0.217 0.256 0.077 0.040 0.051 0.058 0.151 nan 0.203 0.293 1.420 1.562 0.146 0.143 0.031 0.058 1.151 5.631 0.259 0.291 0.007 0.062 0.012 0.030 0.127 0.066 0.030 0.081 0.051 2.585 3724 chr18 31732106 31741575 + 0 NA intron (NM_001198546, intron 1 of 9) L2a|LINE|L2 65594 NM_001198547 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding nan 1.096 0.880 4.467 1.696 0.795 2.648 0.133 2.207 1.130 6.651 5.006 0.391 0.050 0.333 0.236 0.308 0.370 8.607 8.955 7.286 3.903 0.180 0.202 0.699 0.991 nan 8.133 2.658 2.470 0.413 0.713 6.844 9.741 0.332 0.805 3.361 2.458 2.354 1.165 2.317 0.244 2.648 6.651 0.278 2.162 0.314 0.119 5020 chr20 57635563 57642225 + 0 NA Intergenic Intergenic -20993 NM_016045 51012 Hs.656865 NM_016045 ENSG00000101166 PRELID3B C20orf45|SLMO2|dJ543J19.5 PRELI domain containing 3B protein-coding 1.269 1.388 0.800 0.145 0.565 0.123 0.331 0.121 0.141 0.332 0.294 0.215 0.654 3.977 0.195 0.576 nan 0.126 0.129 0.471 0.557 6.404 1.296 0.197 0.132 0.772 1.115 0.134 0.202 2.430 2.327 0.203 0.199 6.008 7.967 0.364 0.626 3.568 1.325 0.110 0.176 1.879 0.024 0.331 0.215 0.250 4.005 0.050 0.036 7424 chr7 106584249 106607437 + 0 NA Intergenic MLT1A0|LTR|ERVL-MaLR -89335 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding nan 0.576 0.649 0.114 0.296 0.117 0.520 0.110 0.069 0.081 0.150 0.133 0.301 0.066 0.134 0.539 0.303 0.257 0.337 0.416 0.442 3.452 1.184 0.216 0.198 0.373 0.547 0.143 0.224 0.325 0.184 0.233 0.300 0.080 0.076 0.173 nan 1.054 0.901 0.041 0.168 0.004 0.075 0.520 0.133 0.013 0.045 0.034 0.032 4330 chr2 48420961 48444303 + 0 NA Intergenic Intergenic -109163 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 1.426 nan 1.596 0.150 0.342 0.124 0.231 0.137 0.041 0.155 0.189 0.148 0.400 0.042 0.129 0.850 1.498 0.947 0.721 nan 0.679 2.009 0.608 0.381 0.474 1.611 1.783 0.339 0.445 2.085 1.774 0.217 0.281 0.458 0.415 1.508 nan nan 0.558 0.045 0.118 0.113 0.140 0.231 0.148 0.494 0.018 0.051 1.080 6136 chr5 1864919 1887653 + 0 NA Intergenic CpG 6594 NM_016358 50805 Hs.196927 NM_016358 ENSG00000113430 IRX4 IRXA3 iroquois homeobox 4 protein-coding 0.293 0.437 0.610 0.168 0.334 0.154 0.950 0.118 0.098 0.096 0.105 0.321 0.589 0.043 0.076 0.237 0.136 1.428 nan 2.890 1.926 0.387 0.099 0.051 0.046 0.144 0.254 nan 0.113 nan 0.390 0.104 0.115 0.088 0.116 0.052 0.068 0.453 nan 4.134 0.321 0.021 0.042 0.950 0.321 0.381 0.094 0.013 0.016 2199 chr12 125065074 125075262 + 0 NA Intergenic L1ME3A|LINE|L1 -18158 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 1.027 1.324 1.086 0.353 2.040 0.851 0.551 0.168 0.095 0.661 0.471 7.928 1.672 0.042 0.072 0.425 0.380 0.253 0.290 2.981 3.910 nan 0.840 0.585 0.673 0.969 1.307 4.089 4.829 0.628 0.325 0.225 0.377 0.497 0.511 0.365 0.802 1.764 0.983 1.048 3.948 0.102 0.141 0.551 7.928 0.270 0.325 0.030 0.206 3002 chr15 96864329 96907900 + 0 NA Intergenic Intergenic 9545 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding nan nan nan 0.568 0.801 0.395 1.250 1.058 0.133 0.953 0.720 2.326 2.704 1.151 0.071 1.412 1.556 5.140 6.193 2.190 1.973 nan 0.067 1.538 1.585 1.312 1.793 0.877 1.076 nan 2.822 1.307 2.710 0.517 0.403 1.302 nan 1.049 0.657 0.329 1.512 0.138 1.104 1.250 2.326 0.197 0.399 0.739 0.236 8415 chrX 137064152 137089259 + 0 NA Intergenic Intergenic 428359 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 0.439 0.659 0.823 0.046 0.269 0.121 0.465 0.053 0.045 0.122 0.114 0.024 0.158 0.017 0.037 0.309 0.400 0.406 0.312 0.155 0.158 3.183 1.031 0.211 0.187 0.106 0.153 0.103 0.112 0.277 0.107 0.212 0.394 0.170 0.137 0.118 0.163 0.577 0.384 0.007 0.073 0.053 0.070 0.465 0.024 0.093 0.189 0.035 7396 chr7 96327096 96340318 + 0 NA intron (NM_006304, intron 1 of 2) intron (NM_006304, intron 1 of 2) 5496 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1, 26S proteasome complex subunit protein-coding nan 1.054 nan 0.952 2.063 0.813 0.557 0.486 0.088 1.179 0.773 0.982 1.710 0.773 0.185 1.225 1.112 1.807 2.602 1.437 1.344 2.366 1.103 2.627 2.716 1.256 1.461 1.470 2.285 1.377 1.068 0.937 1.519 4.047 5.719 1.378 nan 1.909 0.977 0.463 0.370 0.818 0.516 0.557 0.982 0.205 0.300 0.292 0.400 287 chr1 45982616 45992352 + 0 NA 5' UTR (NM_181696, exon 1 of 6) 5' UTR (NM_181696, exon 1 of 6) 126 NM_002574 5052 Hs.180909 NM_002574 ENSG00000117450 PRDX1 MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2 peroxiredoxin 1 protein-coding nan 2.257 7.476 2.808 2.507 1.515 2.366 1.617 0.349 1.711 1.337 1.629 4.048 2.931 0.188 2.934 3.731 3.628 6.256 5.645 5.303 4.632 1.106 9.226 9.026 3.296 4.003 nan 7.963 3.069 3.178 3.539 nan 3.627 4.638 3.974 5.147 2.397 1.547 1.205 1.668 0.709 1.667 2.366 1.629 1.380 1.432 1.065 1.986 3838 chr18 55607703 55615684 + 0 NA Intergenic L1ME4a|LINE|L1 -99917 NM_015277 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding nan 0.943 1.532 0.193 0.405 0.080 0.428 0.129 0.101 0.117 0.075 0.305 0.414 0.042 0.071 2.538 1.159 6.666 0.738 0.721 0.749 1.796 0.667 17.215 18.199 0.469 0.778 0.637 0.519 0.557 0.253 0.329 0.450 0.311 0.475 0.392 1.500 nan 1.219 0.084 0.100 0.085 0.088 0.428 0.305 0.135 0.057 0.087 0.297 5370 chr3 51420994 51430094 + 0 NA intron (NM_006010, intron 3 of 3) L2a|LINE|L2 2876 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 3.198 2.808 nan 1.950 2.253 0.719 1.829 2.183 0.250 1.088 0.601 2.535 5.420 2.255 0.093 2.688 2.542 4.787 6.870 4.828 4.678 3.882 3.036 6.054 6.059 1.809 2.417 3.595 8.981 nan 5.030 3.854 6.979 2.885 3.210 5.287 3.333 2.011 1.102 1.365 1.643 0.503 1.482 1.829 2.535 0.502 2.325 0.988 1.085 3831 chr18 55096394 55115786 + 0 NA intron (NM_004852, intron 1 of 1) CpG 3173 NM_004852 9480 Hs.194725 NM_004852 ENSG00000119547 ONECUT2 OC-2|OC2 one cut homeobox 2 protein-coding nan 1.023 1.734 1.081 1.093 0.551 2.655 0.054 0.060 0.557 0.371 1.344 3.869 0.269 0.059 2.012 2.572 1.070 0.865 2.572 2.332 2.382 0.668 0.468 0.558 1.050 1.408 1.315 1.686 1.064 1.308 1.290 2.518 3.975 4.714 0.517 0.900 nan 1.913 0.502 0.798 1.143 2.011 2.655 1.344 0.275 1.240 1.386 0.083 2192 chr12 123734719 123743948 + 0 NA intron (NM_001143905, intron 2 of 2) AluSx|SINE|Alu 13468 NM_001270434 8099 Hs.433201 NM_004642 ENSG00000111328 CDK2AP1 DOC1|DORC1|ST19|doc-1|p12DOC-1 cyclin dependent kinase 2 associated protein 1 protein-coding 2.517 0.933 2.632 1.278 0.647 0.453 0.386 0.143 0.156 0.219 0.199 1.618 0.908 0.317 0.108 1.539 2.147 0.825 1.750 1.030 1.213 nan 0.366 2.351 2.377 4.269 5.554 4.803 6.030 3.557 3.634 0.766 1.145 2.345 2.878 2.721 6.717 1.265 0.515 1.020 1.033 0.966 3.053 0.386 1.618 1.418 0.495 0.332 2.308 1995 chr12 64370831 64379890 + 0 NA intron (NM_020762, intron 1 of 21) intron (NM_020762, intron 1 of 21) 136827 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 0.841 0.609 0.819 0.116 0.489 0.300 0.239 0.354 0.107 0.213 0.233 0.131 0.407 0.174 0.082 3.608 3.175 6.890 6.821 0.355 nan 1.881 0.509 0.639 0.583 0.755 1.088 0.631 0.645 0.376 0.214 0.617 0.643 0.689 1.083 0.234 0.289 0.850 0.818 0.030 0.137 0.188 0.220 0.239 0.131 0.043 0.113 0.142 0.082 5972 chr4 94748555 94758308 + 0 NA Intergenic Intergenic 3353 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 0.343 0.466 0.366 0.268 0.329 0.149 0.273 0.062 0.042 0.115 0.065 0.012 0.758 0.034 0.054 0.495 0.608 0.323 0.588 0.419 0.327 0.121 0.019 0.308 0.392 0.121 0.190 0.343 0.345 0.373 0.216 0.137 0.230 0.085 0.156 0.083 0.155 0.138 0.202 0.247 0.074 0.044 7.349 0.273 0.012 0.020 0.052 0.022 0.025 2900 chr15 61315243 61320532 + 0 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 203615 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 0.602 0.691 nan 0.101 0.426 0.096 0.187 0.103 0.030 0.177 0.125 0.263 0.384 0.038 0.100 0.347 0.396 9.890 5.934 0.303 0.376 nan 0.114 0.170 0.137 0.117 0.246 0.325 0.250 0.484 0.306 0.254 0.269 0.087 0.066 0.258 0.396 0.409 0.427 0.010 0.060 0.018 0.029 0.187 0.263 0.109 0.020 0.038 0.039 6491 chr5 145786308 145794528 + 0 NA Intergenic Intergenic -36455 NM_001040006 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding nan 0.720 0.634 0.086 0.207 0.194 0.047 0.073 0.019 0.037 0.113 0.029 0.273 0.066 0.089 0.397 0.657 0.194 0.256 0.153 0.274 0.125 0.074 0.047 0.107 0.306 0.508 0.185 0.220 0.395 0.172 0.205 0.276 0.655 0.159 0.158 0.194 0.401 0.365 0.021 0.033 0.023 4.339 0.047 0.029 0.024 0.024 0.072 0.046 3809 chr18 48553783 48559348 + 0 NA promoter-TSS (NM_005359) promoter-TSS (NM_005359) -18 NM_005359 4089 Hs.75862 NM_005359 ENSG00000141646 SMAD4 DPC4|JIP|MADH4|MYHRS SMAD family member 4 protein-coding nan 3.024 4.101 4.050 3.512 2.013 5.554 1.536 0.057 1.327 0.634 6.346 6.216 2.018 0.080 5.333 5.403 6.686 10.506 9.138 8.641 8.681 4.413 5.983 5.934 3.001 3.369 3.656 6.958 4.970 4.850 2.550 5.552 7.689 9.667 4.904 nan 5.267 2.752 2.389 2.477 1.813 2.411 5.554 6.346 0.616 1.623 1.458 2.009 3486 chr17 58467400 58471379 + 0 NA 5' UTR (NM_032582, exon 1 of 34) 5' UTR (NM_032582, exon 1 of 34) 197 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 7.503 5.097 5.311 10.012 6.366 3.598 4.401 10.899 0.885 3.854 1.694 5.862 13.286 7.373 0.181 8.696 10.005 5.881 8.949 8.905 7.101 9.425 3.974 nan 11.849 5.772 6.528 11.858 20.324 11.420 11.899 4.354 8.883 6.931 7.672 6.800 10.114 3.328 1.848 2.203 6.436 1.893 3.455 4.401 5.862 1.860 4.564 6.898 3.985 8126 chr9 37021923 37038474 + 0 NA intron (NM_001280547, intron 1 of 8) CpG 4278 NM_001280549 5079 Hs.654464 NM_016734 ENSG00000196092 PAX5 ALL3|BSAP paired box 5 protein-coding 1.809 nan 1.021 1.282 1.839 0.852 0.545 0.063 0.106 1.347 0.801 2.434 2.318 0.151 0.065 2.891 3.644 0.577 0.847 2.529 2.302 6.624 1.972 1.972 1.884 1.499 2.073 2.618 3.366 1.797 1.812 3.983 6.281 1.102 1.119 0.726 1.010 2.874 2.173 2.557 0.728 0.126 0.756 0.545 2.434 0.162 0.484 2.481 0.151 6482 chr5 142592947 142612414 + 0 NA 3' UTR (NM_001135608, exon 23 of 23) 3' UTR (NM_001135608, exon 23 of 23) 30615 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA nan 1.139 0.688 0.709 0.544 0.305 0.637 0.306 0.091 0.120 0.113 0.566 3.382 0.089 0.101 0.187 0.253 0.252 0.361 2.641 2.262 0.807 0.384 0.266 0.281 1.274 1.641 2.206 2.314 0.457 0.414 0.325 0.582 0.345 0.326 0.255 0.610 1.066 0.765 0.818 4.078 0.095 0.139 0.637 0.566 0.295 0.511 0.768 0.120 8271 chr9 127622383 127633661 + 0 NA intron (NM_030978, intron 2 of 5) AluSx1|SINE|Alu 3625 NM_030978 81873 Hs.132499 NM_030978 ENSG00000136950 ARPC5L ARC16-2 actin related protein 2/3 complex subunit 5 like protein-coding nan nan 3.479 4.270 3.173 1.487 3.105 1.849 0.483 1.698 0.836 3.747 nan 2.993 0.215 2.786 2.674 4.866 7.531 5.473 5.005 4.078 1.833 9.079 9.005 2.076 nan 5.642 9.100 7.229 7.947 2.277 3.845 4.017 4.498 4.447 4.673 nan 1.438 3.045 1.799 0.573 0.956 3.105 3.747 0.932 3.161 0.613 1.566 658 chr1 170652391 170673120 + 0 NA intron (NM_006902, intron 1 of 4) intron (NM_006902, intron 1 of 4) 29442 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding nan nan nan 0.149 0.142 0.101 0.284 4.315 0.348 0.076 0.101 0.040 0.291 0.047 0.094 0.304 0.194 0.449 0.586 nan 0.560 0.122 0.069 0.073 0.059 3.183 3.518 0.333 0.312 0.484 0.285 0.264 0.457 0.063 0.078 0.531 nan 0.194 0.396 0.048 0.308 0.014 0.023 0.284 0.040 0.009 0.049 0.081 0.244 3262 chr17 7460460 7466498 + 0 NA exon (NM_001198622, exon 3 of 5) exon (NM_001198622, exon 3 of 5) -1830 NM_015670 26168 Hs.513926 NM_015670 ENSG00000161956 SENP3 SMT3IP1|SSP3|Ulp1 SUMO1/sentrin/SMT3 specific peptidase 3 protein-coding 3.396 2.292 2.220 2.258 2.689 1.726 2.988 1.313 0.106 1.427 0.757 3.984 4.396 6.321 0.372 4.043 4.817 2.937 4.505 4.251 3.902 5.876 2.176 4.618 4.588 2.126 3.082 6.971 8.219 1.588 1.835 1.674 2.142 1.979 2.079 2.555 3.897 2.094 0.890 4.755 1.161 0.368 0.534 2.988 3.984 0.996 4.999 0.558 1.598 877 chr1 221880247 221926947 + 0 NA intron (NR_111940, intron 1 of 2) intron (NR_111940, intron 1 of 2) 6645 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 2.421 nan 2.892 1.416 2.198 1.115 1.159 0.122 0.103 2.271 0.834 2.608 2.286 0.051 0.117 0.852 0.756 2.242 3.703 2.851 nan 3.342 2.596 2.684 2.922 1.299 1.537 2.865 3.974 1.389 1.474 0.200 0.229 2.922 3.265 2.352 5.218 2.320 1.350 0.333 0.332 0.687 0.752 1.159 2.608 0.141 1.144 0.055 2.113 1508 chr11 71810486 71824917 + 0 NA 3' UTR (NM_001330321, exon 6 of 6) 3' UTR (NM_001330321, exon 6 of 6) -3268 NM_017907 55004 Hs.731528 NM_017907 ENSG00000149357 LAMTOR1 C11orf59|PDRO|Ragulator1|p18|p27RF-Rho late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 protein-coding nan 2.009 1.736 3.099 3.006 1.721 2.349 1.567 0.089 1.139 0.624 2.861 5.573 1.947 0.104 4.956 4.456 3.899 5.914 5.656 5.583 4.927 2.223 11.065 12.108 3.385 4.434 4.890 6.259 3.805 3.512 2.956 3.828 3.183 4.097 2.349 3.118 2.662 1.313 2.704 2.301 0.596 2.139 2.349 2.861 0.876 2.449 1.192 0.986 1771 chr12 3436578 3453917 + 0 NA Intergenic MER110A|LTR|ERV1 -45268 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 1.056 nan nan 1.184 0.418 0.176 1.007 0.075 0.074 0.257 0.244 0.510 6.156 0.068 0.097 0.286 0.193 0.120 0.121 nan 1.114 2.104 0.633 0.264 0.274 0.238 0.464 1.972 2.176 0.713 0.654 0.319 0.450 0.232 0.287 0.773 nan 1.267 0.745 2.357 0.129 0.033 0.091 1.007 0.510 0.095 0.528 0.069 0.570 1128 chr10 65386847 65393533 + 0 NA Intergenic CpG -108355 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 2.340 nan 3.161 2.129 2.081 1.355 1.568 3.724 0.220 1.642 0.707 1.201 12.357 5.172 0.091 1.420 2.190 3.610 8.146 1.820 1.525 3.498 0.771 1.129 0.906 3.098 3.677 2.911 4.691 1.693 1.754 0.511 1.477 3.088 2.762 1.794 nan 1.937 0.912 4.066 1.485 1.077 0.378 1.568 1.201 0.569 4.884 1.326 1.832 8323 chr9 137230761 137252075 + 0 NA intron (NM_002957, intron 1 of 9) intron (NM_002957, intron 1 of 9) 23109 NM_002957 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding nan 0.564 1.157 0.083 0.339 0.167 0.370 0.397 0.113 0.037 0.061 0.185 1.614 0.131 0.035 0.697 1.353 0.265 0.595 0.620 0.553 nan 0.043 0.231 0.315 0.649 0.972 0.218 0.203 3.235 3.776 0.695 0.626 0.359 0.377 0.303 0.263 0.414 0.440 0.816 0.025 0.054 0.011 0.370 0.185 0.959 0.110 0.117 0.035 2959 chr15 76618838 76635029 + 0 NA Intergenic MIR|SINE|MIR -2132 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 1.386 1.066 1.261 0.126 0.412 0.247 0.809 0.659 0.100 0.137 0.134 0.333 1.248 1.000 0.060 1.865 1.681 1.440 1.816 0.951 0.670 1.378 0.375 1.876 2.027 0.811 1.104 0.166 0.220 2.891 2.687 1.667 2.804 1.551 1.033 4.105 5.757 0.742 0.490 0.152 0.094 0.441 0.622 0.809 0.333 0.408 0.038 0.981 2.162 4966 chr20 45311395 45339851 + 0 NA Intergenic LTR16C|LTR|ERVL -7347 NM_033550 112858 Hs.440263 NM_033550 ENSG00000172315 TP53RK BUD32|C20orf64|Nori-2|Nori-2p|PRPK|dJ101A2 TP53 regulating kinase protein-coding nan nan 1.226 0.542 0.964 0.394 0.877 0.736 0.131 0.255 0.145 0.980 2.105 0.687 0.119 2.526 3.154 0.911 1.907 1.148 1.069 nan 1.538 1.012 1.140 0.759 1.073 1.697 2.814 nan 1.484 3.106 2.661 0.206 0.181 2.052 2.888 0.540 0.473 0.309 1.122 0.040 0.596 0.877 0.980 0.254 0.415 1.073 0.613 3313 chr17 18085129 18088720 + 0 NA promoter-TSS (NM_017758) promoter-TSS (NM_017758) 57 NM_017758 54890 Hs.744130 NM_017758 ENSG00000091542 ALKBH5 ABH5|OFOXD|OFOXD1 alkB homolog 5, RNA demethylase protein-coding 5.826 3.080 4.852 3.279 8.493 5.025 5.643 2.482 0.493 1.009 0.876 5.011 8.558 5.104 0.124 5.640 7.608 6.246 nan 9.770 8.971 4.700 2.098 6.846 6.512 4.269 5.282 8.674 9.729 nan 8.486 2.778 5.879 2.733 2.912 4.965 8.130 1.758 0.875 2.923 3.618 0.557 3.794 5.643 5.011 2.301 7.870 1.513 3.954 1824 chr12 10867800 10878412 + 0 NA intron (NM_001145426, intron 1 of 8) intron (NM_001145426, intron 1 of 8) 2847 NM_001145426 8531 Hs.221889 NM_003651 ENSG00000060138 YBX3 CSDA|CSDA1|DBPA|ZONAB Y-box binding protein 3 protein-coding 1.055 1.595 0.920 2.061 0.194 0.060 0.254 1.159 0.076 0.991 0.519 0.056 2.759 1.923 0.124 0.468 0.455 3.151 6.445 nan 0.799 1.289 0.404 14.324 14.601 1.271 1.813 2.262 4.364 2.501 3.080 0.525 1.450 0.071 0.104 2.478 3.471 0.743 0.657 0.105 0.115 0.008 0.254 0.056 0.386 0.583 0.475 1.303 3868 chr18 60980993 60991008 + 0 NA 5' UTR (NM_000633, exon 2 of 3) 5' UTR (NM_000633, exon 2 of 3) 613 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 1.719 1.789 5.385 5.576 3.510 1.618 2.756 0.437 0.032 1.211 0.609 4.103 13.329 0.498 0.088 2.747 3.351 6.746 5.834 8.712 7.065 7.579 2.888 16.553 16.359 0.606 nan 8.176 8.734 1.782 1.824 2.593 5.538 4.449 4.564 0.499 0.386 6.217 3.237 3.926 2.787 0.872 1.160 2.756 4.103 0.427 2.288 2.387 0.126 4865 chr20 17548583 17551837 + 0 NA promoter-TSS (NM_006870) promoter-TSS (NM_006870) -345 NM_001278608 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 6.030 nan 8.485 7.608 3.681 2.591 5.161 10.175 0.546 2.622 1.240 6.685 13.275 2.997 0.073 9.091 12.239 8.911 13.193 8.921 6.424 10.452 3.603 8.390 8.268 2.811 4.183 10.541 13.234 4.164 5.251 2.406 8.022 7.539 5.377 2.912 3.818 2.242 1.554 4.642 3.724 2.029 1.625 5.161 6.685 5.003 6.335 3.252 0.634 8020 chr9 3464182 3482210 + 0 NA intron (NM_001282116, intron 1 of 16) intron (NM_001282116, intron 1 of 16) 16291 NM_001282117 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 0.942 1.806 1.520 0.165 0.808 0.291 0.405 0.348 0.125 0.733 0.661 0.222 0.434 0.216 0.082 0.393 0.340 1.325 2.163 0.475 0.566 1.722 0.531 0.331 0.298 3.462 4.240 0.389 0.386 0.466 0.198 0.225 0.451 2.422 3.627 0.382 nan 1.380 0.856 0.064 0.140 0.628 0.086 0.405 0.222 0.048 0.191 0.155 0.062 6046 chr4 153268408 153304334 + 0 NA intron (NM_033632, intron 2 of 11) L2c|LINE|L2 -12261 NM_018315 55294 Hs.561245 NM_018315 ENSG00000109670 FBXW7 AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 F-box and WD repeat domain containing 7 protein-coding nan 1.108 0.791 0.754 5.732 3.086 0.281 0.230 0.049 0.456 0.353 0.737 0.547 0.112 0.107 0.452 0.590 0.706 1.185 0.763 1.036 1.558 0.610 2.748 2.695 0.421 0.618 2.351 2.513 0.644 0.441 0.450 0.818 0.385 0.366 0.251 0.568 0.960 0.542 0.098 0.174 0.064 0.223 0.281 0.737 0.014 0.355 0.489 0.063 6511 chr5 150283399 150285608 + 0 NA promoter-TSS (NM_001172831) promoter-TSS (NM_001172831) 42 NM_001172832 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 1.157 nan 1.037 3.743 3.549 1.888 2.069 0.144 0.846 0.190 3.520 0.555 5.353 0.104 1.158 1.142 0.141 0.115 5.765 6.520 12.280 8.083 12.612 13.588 4.833 6.234 15.607 24.283 12.051 11.884 3.232 4.409 5.361 5.951 6.267 4.574 5.152 3.353 2.913 1.720 0.254 0.473 3.520 1.928 0.448 1.728 6365 chr5 92899710 92952426 + 0 NA intron (NM_005654, intron 2 of 2) intron (NM_005654, intron 2 of 2) 7025 NM_005654 7025 Hs.519445 NM_005654 ENSG00000175745 NR2F1 BBOAS|BBSOAS|COUP-TFI|EAR-3|EAR3|ERBAL3|NR2F2|SVP44|TCFCOUP1|TFCOUP1 nuclear receptor subfamily 2 group F member 1 protein-coding nan 9.108 2.728 0.217 0.541 0.294 5.684 0.818 0.109 0.247 0.210 0.002 1.519 6.618 0.176 0.272 0.179 1.128 1.032 0.817 0.613 3.090 1.252 0.203 0.209 1.214 1.617 0.588 0.591 0.554 0.340 0.115 0.173 12.244 8.347 0.205 nan 1.908 1.117 0.414 0.752 3.379 0.509 5.684 0.002 0.099 1.268 0.016 0.199 7122 chr7 1262580 1269371 + 0 NA Intergenic Intergenic -6679 NM_001080461 340260 Hs.232272 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 5.535 0.623 13.860 0.052 0.224 0.118 0.107 0.089 0.032 0.140 0.072 0.123 nan 0.098 0.142 0.246 0.198 0.111 nan 0.467 0.269 nan 0.097 0.246 0.310 0.126 0.226 nan 0.281 2.215 2.661 0.158 0.146 0.148 0.202 0.139 0.538 0.293 0.207 0.030 0.052 0.017 0.047 0.107 0.123 1.102 0.075 0.007 0.091 6226 chr5 33439250 33443892 + 0 NA intron (NR_047678, intron 1 of 17) MIR3|SINE|MIR 689 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 4.206 3.509 9.056 11.903 3.323 1.764 3.289 7.581 0.450 5.172 2.243 5.631 11.641 5.290 0.204 5.542 6.441 7.747 10.123 7.335 6.366 8.197 2.984 16.311 17.511 7.397 9.780 9.241 13.051 12.203 13.390 4.735 9.620 7.885 7.431 3.938 5.772 5.058 2.750 2.610 3.955 1.249 2.558 3.289 5.631 1.566 3.715 2.991 1.890 3418 chr17 41620100 41623889 + 0 NA 3' UTR (NM_001322219, exon 24 of 24) 3' UTR (NM_001322219, exon 24 of 24) 1311 NM_001986 2118 Hs.434059 NM_001986 ENSG00000175832 ETV4 E1A-F|E1AF|PEA3|PEAS3 ETS variant 4 protein-coding 2.643 2.259 nan 0.905 1.147 0.804 1.225 1.478 0.128 0.203 0.189 0.063 3.780 3.112 0.074 6.602 7.277 11.027 7.493 0.430 nan 3.327 1.233 1.506 1.257 0.474 1.207 0.964 nan 0.747 0.281 0.876 0.656 1.389 2.083 0.213 0.249 0.377 0.495 0.059 0.164 0.126 0.042 1.225 0.063 0.155 2.176 0.026 0.034 598 chr1 157013017 157018628 + 0 NA promoter-TSS (NM_198236) promoter-TSS (NM_198236) -660 NM_014784 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding nan nan 2.724 1.867 2.033 1.226 2.963 1.615 0.120 1.462 0.871 3.456 5.255 3.077 0.136 6.305 5.955 9.708 7.392 6.785 nan 4.388 2.024 2.488 2.581 2.461 3.141 5.137 7.385 2.705 2.183 7.217 10.161 2.138 1.507 3.000 3.510 2.210 0.796 1.109 3.334 0.270 0.518 2.963 3.456 0.296 2.533 3.267 0.840 7606 chr8 17692177 17710075 + 0 NA Intergenic L1ME3|LINE|L1 -42700 NM_001001924 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 0.836 1.075 nan 0.074 1.749 0.906 0.368 0.361 0.081 0.429 0.258 0.870 0.316 0.048 0.135 0.398 0.254 1.525 5.282 0.971 nan 1.829 0.673 0.331 0.434 0.161 0.261 0.466 0.416 0.633 0.335 0.093 0.178 1.368 1.799 0.237 0.600 2.133 1.179 0.114 0.146 0.252 0.128 0.368 0.870 0.022 1.479 0.016 0.199 6035 chr4 141154921 141179685 + 0 NA Intergenic Intergenic -11137 NM_032547 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 2.591 2.590 2.435 4.518 5.642 2.979 1.139 1.068 0.137 1.944 1.037 3.953 4.770 0.101 0.078 1.257 1.838 0.737 1.078 5.057 4.034 5.109 1.442 0.498 0.576 2.456 3.362 5.712 4.841 4.707 5.421 1.055 1.764 3.588 3.300 1.546 3.160 2.648 1.482 3.247 3.109 1.056 1.529 1.139 3.953 0.710 1.484 1.301 0.928 1394 chr11 44605521 44634083 + 0 NA intron (NM_002231, intron 3 of 9) intron (NM_002231, intron 3 of 9) 32661 NM_001024844 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding nan 1.064 1.568 0.046 0.389 0.235 0.089 0.209 0.158 0.224 0.161 0.105 2.197 0.087 0.099 0.561 0.704 0.239 0.407 1.702 1.812 0.498 0.202 0.115 0.145 0.933 1.426 0.466 0.511 1.118 0.896 0.251 0.269 0.155 0.215 0.250 nan 1.125 0.756 4.949 0.109 0.057 0.020 0.089 0.105 0.229 0.060 0.045 0.222 2562 chr14 37124453 37162463 + 0 NA intron (NM_006194, intron 4 of 4) intron (NM_006194, intron 4 of 4) 16685 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 1.419 0.820 1.263 1.376 0.643 0.296 0.209 0.164 0.181 0.327 0.220 0.583 18.119 0.081 0.103 0.322 0.332 0.342 0.429 9.856 9.336 0.747 0.276 0.376 0.399 0.564 0.789 5.501 6.455 0.745 0.487 0.508 0.748 2.089 2.106 0.065 0.163 1.460 0.708 15.629 6.154 0.951 0.157 0.209 0.583 0.087 0.952 0.451 0.081 3800 chr18 47806263 47815512 + 0 NA exon (NM_014593, exon 9 of 15) exon (NM_014593, exon 9 of 15) -2743 NM_001204141 4152 Hs.405610 NM_002384 ENSG00000141644 MBD1 CXXC3|PCM1|RFT methyl-CpG binding domain protein 1 protein-coding nan 2.008 2.900 3.395 2.710 1.698 4.064 0.909 0.139 1.053 0.489 3.288 5.941 1.220 0.097 3.340 3.874 3.651 5.038 6.633 5.962 8.312 3.438 3.965 4.150 1.394 1.832 3.294 3.515 2.827 2.476 2.165 3.414 4.389 6.062 1.822 nan 5.146 2.453 1.986 2.125 0.843 1.889 4.064 3.288 0.589 1.628 1.520 1.029 7927 chr8 128655923 128659434 + 0 NA Intergenic Intergenic 88535 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility candidate 11 (non-protein coding) ncRNA 22.474 11.806 20.608 0.459 1.114 0.374 0.145 0.215 0.045 0.179 0.166 0.102 nan 0.125 0.093 0.447 0.550 0.840 1.593 0.834 0.799 2.804 0.665 nan nan 43.817 45.785 5.708 6.518 95.099 80.157 0.491 1.080 2.879 2.683 52.647 68.564 0.869 0.585 0.063 0.397 1.226 0.873 0.145 0.102 7.950 0.224 0.553 85.790 363 chr1 68566509 68578415 + 0 NA intron (NR_040077, intron 6 of 9) intron (NR_040077, intron 6 of 9) -55148 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 1.138 0.753 nan 0.158 0.703 0.222 2.577 0.239 0.121 0.212 0.138 0.563 0.968 0.037 0.094 0.387 0.248 0.366 0.409 0.468 0.518 7.533 3.700 0.368 0.391 nan nan 0.390 nan 0.472 0.266 0.188 0.256 0.844 0.921 0.429 0.764 0.845 0.721 0.019 0.090 0.168 0.072 2.577 0.563 0.033 0.077 0.059 0.222 4264 chr2 25585157 25601821 + 0 NA Intergenic MER4E1|LTR|ERV1 -28030 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 1.278 1.279 1.560 1.169 0.606 0.269 0.546 0.156 0.097 1.747 0.799 0.442 2.792 0.199 0.144 0.643 0.988 0.808 1.217 1.303 1.350 2.310 0.770 1.214 1.256 0.752 1.289 1.993 nan 0.710 0.433 0.505 0.644 0.704 0.632 0.638 1.095 2.676 1.141 4.812 1.003 0.212 0.578 0.546 0.442 0.423 1.543 0.230 0.269 4140 chr19 50422202 50429461 + 0 NA intron (NM_001193357, intron 1 of 1) intron (NM_001193357, intron 1 of 1) -6128 NM_012068 22809 Hs.9754 NM_012068 ENSG00000169136 ATF5 ATFX|HMFN0395 activating transcription factor 5 protein-coding 1.444 0.770 1.053 0.333 13.275 7.187 1.740 0.237 0.140 0.353 0.080 2.287 0.957 1.641 0.100 1.880 2.943 0.477 0.799 4.708 4.364 0.758 0.290 3.621 3.763 1.045 1.405 0.614 0.787 0.874 0.936 5.050 5.828 0.418 0.603 0.410 1.485 1.008 0.488 2.537 3.198 0.144 3.236 1.740 2.287 1.869 0.161 2.537 0.269 4876 chr20 20410750 20490662 + 0 NA intron (NM_020343, intron 37 of 39) intron (NM_020343, intron 37 of 39) 101941 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 1.967 1.713 nan 0.494 3.273 1.678 1.218 0.174 0.110 0.908 0.567 1.243 0.766 0.037 0.086 1.423 1.775 0.614 0.617 0.921 1.017 3.778 1.278 0.308 0.320 3.149 4.293 1.548 1.462 3.920 3.435 0.950 1.535 3.789 4.690 0.641 1.419 1.815 0.924 0.361 0.729 1.705 0.686 1.218 1.243 1.530 1.155 0.947 0.492 1449 chr11 62357870 62372962 + 0 NA intron (NM_001330292, intron 6 of 17) MER91C|DNA|hAT-Tip100 3348 NM_001330292 9219 Hs.173043 NM_004739 ENSG00000149480 MTA2 MTA1L1|PID metastasis associated 1 family member 2 protein-coding nan 2.182 2.088 3.931 3.362 1.690 3.168 1.265 0.181 1.510 0.621 2.747 5.349 2.922 0.140 6.912 6.762 4.211 5.573 6.176 5.769 4.532 1.818 5.183 5.620 2.978 4.231 4.965 7.521 3.727 4.080 3.332 5.753 3.308 3.591 3.219 4.136 2.504 1.112 2.420 2.744 0.699 1.631 3.168 2.747 1.288 1.674 2.150 1.178 1314 chr11 12688752 12704565 + 0 NA intron (NM_021961, intron 1 of 12) CpG 689 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 1.733 nan 3.747 2.896 1.436 0.949 1.578 1.804 0.192 1.786 0.938 5.167 6.036 1.337 0.099 nan 2.796 1.769 2.901 6.232 5.859 2.558 0.976 3.398 3.267 2.476 nan 1.820 3.462 1.830 1.690 0.841 1.762 3.125 3.442 1.669 2.673 2.316 nan 4.335 2.205 0.886 1.196 1.578 5.167 0.264 0.627 0.770 0.486 1798 chr12 6928760 6939805 + 0 NA intron (NM_019858, intron 2 of 4) intron (NM_019858, intron 2 of 4) -3256 NM_014262 10536 Hs.631655 NM_014262 ENSG00000110811 P3H3 GRCB|HSU47926|LEPREL2 prolyl 3-hydroxylase 3 protein-coding 4.142 nan nan 1.942 1.574 0.945 3.115 0.133 0.020 1.108 0.593 1.735 4.208 2.208 0.125 0.792 1.927 1.163 2.105 nan 5.915 6.436 2.419 1.761 1.812 3.794 5.476 1.757 2.107 3.144 3.164 1.383 2.933 1.924 1.296 3.114 nan 1.177 0.610 2.233 3.692 0.568 0.520 3.115 1.735 5.076 1.023 1.319 2.701 2535 chr14 32403949 32421160 + 0 NA Intergenic Intergenic 133351 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 2.479 0.920 2.030 0.542 0.778 0.344 0.485 1.090 0.290 0.274 0.196 1.274 1.250 0.100 0.080 0.181 0.156 0.340 0.749 1.235 1.219 2.832 0.763 0.287 0.306 3.958 5.097 0.999 1.175 1.351 1.175 0.203 0.334 1.600 1.823 0.681 1.432 1.219 1.095 0.052 0.186 0.443 0.909 0.485 1.274 0.854 1.254 0.144 0.263 522 chr1 150037342 150041133 + 0 NA promoter-TSS (NM_001279353) promoter-TSS (NM_001279353) -113 NM_007259 11311 Hs.443750 NM_007259 ENSG00000136631 VPS45 H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A vacuolar protein sorting 45 homolog protein-coding nan nan 6.694 4.655 5.694 3.310 4.614 5.242 0.042 4.590 2.088 5.806 20.394 5.707 0.125 7.295 6.797 10.460 13.942 13.313 nan 8.098 3.406 9.633 9.966 9.475 10.529 7.603 11.544 9.220 8.766 7.423 13.114 7.122 6.538 8.320 8.777 4.344 2.240 4.066 6.236 1.192 2.949 4.614 5.806 1.203 6.694 4.450 2.223 7116 chr7 764946 778245 + 0 NA intron (NM_017802, intron 2 of 12) intron (NM_017802, intron 2 of 12) -4282 NM_001164759 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 2.093 1.327 3.313 2.370 0.581 0.444 1.220 0.315 0.180 1.193 0.579 2.066 nan 1.154 0.209 2.210 1.645 0.899 nan 4.147 4.509 nan 0.703 3.826 3.914 1.130 1.703 nan 1.656 1.175 1.457 0.705 1.135 1.114 0.932 1.164 1.243 2.925 1.401 1.182 0.500 0.126 0.424 1.220 2.066 0.766 2.808 0.202 0.445 2661 chr14 69247371 69267221 + 0 NA intron (NM_004926, intron 1 of 1) intron (NM_004926, intron 1 of 1) 3335 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 3.781 2.457 3.910 1.920 0.451 0.249 1.323 4.500 0.509 0.191 0.123 0.585 3.396 6.532 0.188 0.290 0.287 4.418 7.778 0.491 0.560 0.843 0.314 9.338 9.522 0.875 1.257 1.263 nan 0.857 0.488 0.332 0.425 0.758 0.654 0.684 1.339 1.011 nan 1.781 0.090 0.073 0.256 1.323 0.585 0.234 0.381 0.134 0.503 3841 chr18 55802019 55817391 + 0 NA intron (NM_001144964, intron 1 of 30) intron (NM_001144964, intron 1 of 30) -6860 NM_001144969 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding nan 1.000 1.115 0.400 0.402 0.261 0.449 0.122 0.073 0.172 0.119 0.227 0.503 0.105 0.079 0.655 0.828 1.280 2.169 0.902 0.996 5.436 1.194 1.054 1.130 0.310 0.625 2.112 1.937 0.434 0.318 0.387 0.573 0.471 0.918 0.446 1.109 nan 1.718 0.087 0.265 0.092 0.072 0.449 0.227 0.098 0.119 0.084 0.323 6794 chr6 47039585 47052299 + 0 NA Intergenic Intergenic -35843 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 1.126 0.884 0.803 0.179 0.362 0.138 0.337 0.846 0.126 0.152 0.084 0.056 0.351 0.060 0.126 2.409 3.024 10.324 8.974 0.271 0.330 0.363 0.102 0.423 0.434 0.168 0.271 0.529 nan 0.363 0.147 1.352 2.085 0.238 0.375 0.480 1.050 0.687 0.605 0.029 0.052 0.030 0.031 0.337 0.056 0.031 0.320 0.408 0.181 3477 chr17 56590352 56597869 + 0 NA intron (NM_004687, intron 1 of 18) intron (NM_004687, intron 1 of 18) 1141 NM_004687 9110 Hs.514373 NM_004687 ENSG00000108389 MTMR4 FYVE-DSP2|ZFYVE11 myotubularin related protein 4 protein-coding 4.943 3.719 3.224 5.186 5.731 3.238 3.506 2.105 0.407 2.462 1.445 3.766 11.528 2.838 0.080 6.206 6.732 4.421 6.859 8.371 5.837 7.447 3.096 nan 12.320 2.416 3.207 nan 14.727 6.351 8.237 2.575 5.207 5.315 4.852 3.682 4.723 2.926 1.366 1.188 4.700 0.544 3.270 3.506 3.766 1.634 2.173 2.273 1.394 6138 chr5 2728474 2762778 + 0 NA TTS (NM_001134222) TTS (NM_001134222) 6143 NM_001134222 153572 Hs.282089 NM_033267 ENSG00000170561 IRX2 IRXA2 iroquois homeobox 2 protein-coding 0.355 0.765 0.727 0.095 1.092 0.636 0.811 0.119 0.146 0.097 0.144 9.003 1.648 0.389 0.119 0.267 0.162 0.219 nan 6.451 5.907 0.071 0.040 0.048 0.040 0.128 0.264 nan 0.133 nan 2.042 0.862 1.713 0.048 0.077 0.178 0.188 0.131 nan 1.088 1.006 0.016 1.581 0.811 9.003 0.232 0.018 0.508 0.022 3107 chr16 30339973 30368823 + 0 NA Intergenic Intergenic -7703 NR_002453 595101 Hs.654650 NR_002453 ENSG00000183604 SMG1P5 - SMG1P5, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 5 pseudo 1.685 0.955 1.249 1.771 1.170 0.650 0.971 0.640 0.117 0.505 0.247 0.885 3.951 0.834 0.095 1.107 1.092 1.218 1.837 1.341 1.277 5.689 1.750 2.419 2.452 1.100 1.708 2.428 3.410 1.768 1.668 0.796 1.156 2.008 2.396 1.067 1.417 1.240 0.646 1.031 0.531 0.448 0.468 0.971 0.885 0.321 0.891 0.302 0.343 404 chr1 93543376 93547737 + 0 NA intron (NM_001164393, intron 1 of 12) intron (NM_001164393, intron 1 of 12) 764 NM_001164392 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding nan nan 3.594 3.961 5.440 2.331 2.582 4.611 0.452 1.621 0.801 4.541 10.586 5.089 0.219 6.621 5.537 7.188 9.650 9.781 nan 7.857 3.716 14.645 15.543 6.936 nan 11.562 17.170 nan 9.117 4.476 7.374 2.912 2.826 9.513 8.896 3.713 1.661 3.814 3.346 0.388 2.781 2.582 4.541 0.891 1.510 2.154 2.395 3861 chr18 60036346 60045601 + 0 NA intron (NM_003839, intron 9 of 9) intron (NM_003839, intron 9 of 9) 48453 NM_001270949 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 0.904 0.778 0.688 0.753 0.977 0.501 0.692 0.145 0.070 0.473 0.376 0.536 0.577 0.058 0.061 0.421 0.320 0.400 0.474 2.122 2.595 2.039 0.834 0.660 nan 1.385 nan 0.590 0.921 0.731 0.413 0.130 0.318 0.955 0.867 0.277 0.376 7.123 4.176 0.348 1.018 0.143 0.078 0.692 0.536 0.252 0.154 0.149 0.214 6625 chr6 15384131 15415971 + 0 NA intron (NM_004973, intron 2 of 17) intron (NM_004973, intron 2 of 17) 150965 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 1.397 nan 1.226 0.750 0.519 0.279 0.589 0.551 0.161 0.247 0.195 1.449 0.227 0.073 0.078 0.631 0.770 0.956 1.556 0.987 0.974 1.024 0.451 0.389 0.383 0.820 1.287 1.080 1.403 1.548 1.174 0.487 0.779 0.464 0.576 1.468 3.800 0.858 0.694 0.158 0.653 0.078 0.879 0.589 1.449 0.373 0.187 0.251 0.903 2083 chr12 94070145 94078102 + 0 NA intron (NM_001320100, intron 2 of 2) intron (NM_001320100, intron 2 of 2) 1578 NM_001330126 8738 Hs.38533 NM_003805 ENSG00000169372 CRADD MRT34|RAIDD CASP2 and RIPK1 domain containing adaptor with death domain protein-coding 2.647 1.776 1.768 1.482 1.109 0.806 1.345 1.953 0.285 0.708 0.613 2.130 nan 1.486 0.121 2.567 2.900 2.486 3.387 4.859 4.528 5.108 2.600 4.863 5.391 8.667 9.812 2.833 nan 3.233 3.321 2.339 2.630 2.169 2.151 2.908 2.323 2.906 1.723 2.981 1.399 0.458 0.779 1.345 2.130 0.745 1.226 0.845 0.863 1736 chr11 130028803 130061612 + 0 NA intron (NM_021978, intron 1 of 18) intron (NM_021978, intron 1 of 18) 15525 NM_021978 6768 Hs.504315 NM_021978 ENSG00000149418 ST14 ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 suppression of tumorigenicity 14 protein-coding 0.638 nan 0.693 2.121 0.865 0.485 0.290 0.055 0.064 1.329 0.756 1.741 5.085 0.068 0.115 1.067 1.602 0.869 1.753 1.973 1.839 3.364 1.015 1.024 1.016 0.203 0.439 4.047 4.810 0.394 0.229 1.422 2.336 1.437 1.399 0.167 nan 2.760 1.478 1.609 1.615 0.209 0.097 0.290 1.741 0.095 0.915 0.961 0.052 592 chr1 156456717 156479219 + 0 NA intron (NM_005920, intron 1 of 11) intron (NM_005920, intron 1 of 11) 2666 NM_005920 4209 Hs.314327 NM_005920 ENSG00000116604 MEF2D - myocyte enhancer factor 2D protein-coding nan nan 4.087 1.229 1.917 0.897 2.098 2.865 0.406 1.918 1.033 1.729 8.135 2.286 0.114 3.739 5.136 3.801 5.147 3.324 nan 2.925 1.471 1.781 1.744 2.729 3.455 6.198 6.169 3.877 3.420 3.342 5.666 1.795 1.650 3.460 9.556 1.818 1.129 0.651 2.905 0.488 0.981 2.098 1.729 0.978 4.631 3.954 2.792 1978 chr12 58221153 58247586 + 0 NA intron (NM_005730, intron 1 of 7) intron (NM_005730, intron 1 of 7) 6378 NM_005730 10106 Hs.524530 NM_005730 ENSG00000175215 CTDSP2 OS4|PSR2|SCP2 CTD small phosphatase 2 protein-coding nan 1.572 1.691 1.810 1.194 0.627 1.010 1.186 0.214 1.287 0.595 2.543 2.479 1.399 0.077 nan 2.623 1.417 2.005 2.827 nan 2.429 0.773 2.999 2.969 1.211 nan 3.276 nan 1.848 1.676 1.160 1.769 0.627 0.707 1.438 2.058 2.495 1.225 0.904 2.641 0.155 0.818 1.010 2.543 0.416 0.611 0.857 0.820 2026 chr12 75961617 76001808 + 0 NA Intergenic Intergenic -76294 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1, small subunit processome component homolog protein-coding nan 1.041 0.817 0.190 0.293 0.179 0.356 0.295 0.178 0.174 0.172 0.230 0.586 0.062 0.069 0.376 0.259 1.300 2.063 0.858 1.045 0.809 0.210 0.197 0.202 5.703 5.067 nan 0.802 2.297 1.935 0.144 0.216 0.780 1.063 0.564 1.086 nan 0.849 0.055 0.182 0.274 0.112 0.356 0.230 0.760 0.191 0.047 0.309 4161 chr19 59068084 59076044 + 0 NA intron (NR_027334, intron 1 of 5) intron (NR_027334, intron 1 of 5) 1511 NR_027334 100131691 Hs.743767 NR_027334 ENSG00000267858 MZF1-AS1 - MZF1 antisense RNA 1 ncRNA 4.232 3.219 4.134 4.829 7.423 4.068 4.017 1.729 0.144 1.964 1.027 5.411 5.063 2.543 0.107 9.061 11.954 3.905 5.776 8.507 7.869 10.106 5.824 4.219 4.262 4.010 5.300 6.634 10.053 6.343 6.221 3.481 5.755 5.175 4.260 5.621 5.587 5.450 2.630 4.238 4.271 1.372 2.357 4.017 5.411 0.832 3.881 2.069 2.150 6103 chr4 185358015 185398945 + 0 NA intron (NM_002199, intron 1 of 8) intron (NM_002199, intron 1 of 8) 17246 NM_002199 3660 Hs.654566 NM_002199 ENSG00000168310 IRF2 IRF-2 interferon regulatory factor 2 protein-coding nan 1.358 nan 0.573 0.871 0.480 0.643 0.987 0.126 0.314 0.203 1.053 1.531 0.622 0.084 0.820 0.927 5.461 6.200 1.270 1.172 0.650 0.263 0.866 0.844 0.097 0.138 1.650 2.388 0.748 0.597 1.928 2.614 0.234 0.256 0.446 0.548 0.796 0.531 0.784 1.224 0.053 0.422 0.643 1.053 0.071 0.318 1.180 0.203 2480 chr14 21559851 21579300 + 0 NA exon (NM_001146683, exon 3 of 8) exon (NM_001146683, exon 3 of 8) -2402 NM_001101672 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding nan 1.830 3.098 2.292 2.290 1.367 2.751 1.620 0.197 0.485 0.319 2.679 4.844 2.489 0.138 2.034 2.113 2.947 4.030 3.962 3.800 3.017 1.692 3.568 3.852 3.416 4.409 2.986 nan 5.294 4.605 1.865 2.717 1.925 1.641 3.147 4.323 1.266 0.829 2.978 2.383 0.511 1.381 2.751 2.679 2.200 1.882 0.870 1.916 206 chr1 36547204 36563521 + 0 NA intron (NM_017825, intron 1 of 5) L2|LINE|L2 909 NM_017825 54936 Hs.18021 NM_017825 ENSG00000116863 ADPRHL2 ARH3 ADP-ribosylhydrolase like 2 protein-coding 2.194 nan 2.017 2.229 1.046 0.705 0.967 0.596 0.137 0.805 0.525 3.126 2.392 0.782 0.108 1.112 1.510 1.055 1.477 3.358 3.547 nan 0.956 1.717 1.770 1.305 2.024 3.342 5.899 nan 1.032 1.893 2.876 0.862 0.789 1.272 1.429 1.542 nan 0.785 1.107 0.211 0.647 0.967 3.126 0.492 0.531 0.617 0.371 358 chr1 68138361 68168143 + 0 NA intron (NM_001199741, intron 2 of 2) intron (NM_001199741, intron 2 of 2) 2392 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 3.175 1.656 nan 0.778 0.905 0.528 1.172 1.490 0.248 0.717 0.399 0.696 2.204 0.307 0.111 0.651 0.901 3.550 4.828 1.517 1.232 2.747 1.304 0.800 0.739 nan nan 2.352 nan 1.647 1.825 0.775 1.385 2.123 3.380 1.591 5.388 1.402 0.838 0.680 1.136 0.730 0.856 1.172 0.696 0.830 0.959 0.589 1.360 6984 chr6 135496932 135527180 + 0 NA intron (NR_134965, intron 5 of 16) AluJr|SINE|Alu 9603 NM_001130172 4602 Hs.606320 NM_005375 ENSG00000118513 MYB Cmyb|c-myb|c-myb_CDS|efg MYB proto-oncogene, transcription factor protein-coding 1.490 1.122 2.161 0.783 0.829 0.465 0.595 0.113 0.101 0.311 0.227 1.171 2.059 0.570 0.157 2.162 2.351 2.315 2.291 2.152 1.752 nan 0.706 3.339 3.297 0.444 0.676 0.943 1.268 1.332 1.227 13.791 20.603 0.905 0.528 1.144 nan 0.621 0.513 0.556 0.613 0.089 0.532 0.595 1.171 0.202 0.301 10.820 0.316 2228 chr13 20354206 20357988 + 0 NA intron (NR_044998, intron 1 of 7) intron (NR_044998, intron 1 of 7) 1062 NR_003272 55269 Hs.213198 NM_001042414 ENSG00000121390 PSPC1 PSP1 paraspeckle component 1 protein-coding 4.924 3.655 4.137 5.119 3.057 1.569 2.272 5.945 0.889 1.327 0.767 5.401 6.685 3.673 0.130 8.690 7.085 7.942 nan 15.778 14.696 5.036 2.586 7.633 7.635 4.508 5.934 4.307 8.305 9.217 8.784 5.937 11.578 2.439 2.937 14.717 11.709 4.278 2.321 1.821 3.613 0.604 4.336 2.272 5.401 0.329 2.339 4.195 4.617 7413 chr7 103433522 103439593 + 0 NA intron (NM_173054, intron 3 of 63) intron (NM_173054, intron 3 of 63) 193406 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding nan 0.669 1.474 0.079 0.248 0.158 0.213 0.100 0.131 0.411 0.283 0.236 0.315 0.054 0.148 2.615 1.158 12.586 6.468 0.313 0.509 0.656 0.419 10.993 11.174 0.633 0.823 0.337 0.297 0.437 0.169 0.734 1.267 0.295 0.392 0.359 nan 0.811 0.905 0.028 0.154 0.048 0.106 0.213 0.236 0.084 0.098 0.101 4112 chr19 47728240 47736514 + 0 NA intron (NM_001127240, intron 1 of 3) intron (NM_001127240, intron 1 of 3) 2074 NM_014417 27113 Hs.467020 NM_014417 ENSG00000105327 BBC3 JFY-1|JFY1|PUMA BCL2 binding component 3 protein-coding 3.837 2.915 5.239 2.362 2.148 1.027 2.448 3.658 0.427 1.063 0.542 1.940 4.044 7.029 0.206 1.467 2.135 2.692 4.968 2.541 2.046 9.077 6.145 7.029 7.127 1.987 3.079 5.484 7.602 2.138 1.763 1.473 1.366 3.424 4.205 2.356 3.890 3.449 1.978 2.359 2.874 0.738 0.581 2.448 1.940 0.400 2.543 0.679 0.865 7873 chr8 109949709 109977211 + 0 NA Intergenic Intergenic -136193 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 0.911 nan nan 0.392 0.275 0.146 0.121 0.111 0.138 0.040 0.077 0.125 0.963 0.027 0.095 0.323 0.217 0.199 0.537 0.435 0.597 nan 2.585 0.611 0.629 0.383 nan 1.248 nan nan 0.161 0.103 0.246 0.377 0.518 0.243 nan 0.239 0.301 0.196 0.587 0.128 0.061 0.121 0.125 0.011 0.100 0.064 0.076 4473 chr2 114029917 114050011 + 0 NA Intergenic Intergenic -3466 NM_003466 7849 Hs.469728 NM_003466 ENSG00000125618 PAX8 - paired box 8 protein-coding 0.791 nan 0.926 0.087 0.224 0.127 0.162 0.696 0.096 0.047 0.080 0.131 nan 0.038 0.043 0.299 0.243 4.908 10.127 0.462 nan 0.539 0.175 0.466 0.512 0.161 0.303 0.327 0.450 0.393 0.185 0.465 0.510 0.040 0.052 0.256 0.391 0.152 0.238 0.106 0.065 0.005 0.036 0.162 0.131 0.044 0.020 0.230 0.098 7107 chr6 169844224 169855176 + 0 NA Intergenic Intergenic -195491 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 0.605 nan 1.069 0.323 0.303 0.262 0.416 0.282 0.046 0.299 0.204 0.617 0.939 0.050 0.111 0.438 0.296 0.158 0.267 0.926 0.879 9.051 2.698 0.308 0.259 0.085 0.113 0.600 0.682 nan 2.007 0.304 0.428 0.164 0.123 0.079 0.195 1.101 0.662 0.031 0.177 0.044 0.102 0.416 0.617 0.044 0.056 0.099 0.046 7462 chr7 122016498 122028658 + 0 NA intron (NM_001167940, intron 24 of 29) intron (NM_001167940, intron 24 of 29) -78013 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 1.228 0.713 1.014 0.283 1.062 0.553 0.624 0.101 0.053 0.172 0.299 0.554 0.360 0.053 0.124 6.191 4.826 5.719 2.306 0.842 0.840 1.857 0.307 0.335 0.351 0.157 0.197 0.407 0.408 0.826 0.528 0.336 0.609 1.200 1.780 1.136 2.492 0.654 0.654 0.009 0.227 0.140 0.830 0.624 0.554 1.018 0.066 0.162 0.264 4159 chr19 59024584 59034478 + 0 NA intron (NM_001316980, intron 1 of 2) intron (NM_001316980, intron 1 of 2) 1395 NM_001316978 84878 Hs.515662 NM_032792 ENSG00000119574 ZBTB45 ZNF499 zinc finger and BTB domain containing 45 protein-coding 2.794 1.942 2.855 2.686 5.564 2.618 3.303 0.618 0.104 1.127 0.628 3.557 4.127 2.901 0.132 5.921 7.018 3.080 4.278 4.889 4.899 7.803 3.154 3.082 3.119 2.634 4.189 4.285 6.472 4.545 5.165 2.229 3.635 4.180 3.785 2.781 3.210 3.094 1.591 3.034 2.534 0.779 1.012 3.303 3.557 1.121 2.029 1.521 0.664 5667 chr3 172629942 172644866 + 0 NA intron (NM_031955, intron 8 of 10) intron (NM_031955, intron 8 of 10) 168929 NM_001258315 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 1.009 1.628 0.807 0.283 2.484 1.201 1.674 0.224 0.064 0.775 0.534 0.830 0.292 0.044 0.094 0.365 0.322 0.401 0.833 0.671 0.722 10.671 5.539 0.213 0.294 0.447 0.752 0.528 0.484 0.606 0.282 0.138 0.314 2.846 3.596 0.266 0.341 1.806 1.020 0.223 0.060 0.949 0.189 1.674 0.830 0.054 0.041 0.080 0.073 6564 chr5 175960228 175974933 + 0 NA Intergenic L2c|LINE|L2 -1932 NM_001171976 54825 Hs.4205 NM_017675 ENSG00000074276 CDHR2 PCDH24|PCLKC cadherin related family member 2 protein-coding 3.305 1.761 3.841 1.714 1.316 0.760 1.134 0.917 0.195 1.514 0.666 2.374 5.799 3.564 0.165 2.919 3.116 3.334 nan 3.522 2.883 3.531 1.404 3.761 3.610 2.386 nan 4.135 6.407 4.228 5.061 1.940 2.849 4.689 4.443 3.177 3.876 1.712 0.982 1.063 2.615 0.917 1.148 1.134 2.374 0.814 2.532 1.244 1.117 8092 chr9 22446065 22458610 + 0 NA 3' UTR (NM_022160, exon 2 of 2) 3' UTR (NM_022160, exon 2 of 2) 5497 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 1.764 nan nan 0.433 0.168 0.115 0.531 0.749 0.174 0.585 0.313 0.143 0.563 0.529 0.083 0.183 0.098 0.544 1.164 0.689 0.766 1.876 0.504 0.062 0.062 3.431 4.152 0.116 0.145 1.207 1.004 0.164 0.247 3.656 3.468 0.425 0.952 3.694 1.758 0.013 0.310 0.993 1.071 0.531 0.143 0.016 0.605 0.063 0.351 2799 chr14 105788941 105818818 + 0 NA intron (NM_015197, intron 1 of 23) intron (NM_015197, intron 1 of 23) -21965 NM_001242787 2972 Hs.424484 NM_001519 ENSG00000185024 BRF1 BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF BRF1, RNA polymerase III transcription initiation factor subunit protein-coding 1.442 0.616 2.212 0.493 0.322 0.222 0.875 0.293 0.097 0.163 0.225 0.257 1.013 0.134 0.078 2.436 3.500 0.304 0.517 1.466 1.183 1.429 0.467 0.600 0.585 0.743 1.168 0.560 0.794 0.787 0.793 1.613 1.357 0.334 0.399 0.234 0.351 0.145 0.130 0.524 0.199 0.076 0.154 0.875 0.257 0.235 0.214 0.689 0.050 348 chr1 65719263 65734086 + 0 NA Intergenic Intergenic -3703 NM_001256865 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 2.243 1.317 nan 1.801 1.233 0.726 1.785 0.291 0.130 0.895 0.645 1.773 2.648 0.400 0.132 2.410 2.695 0.555 1.138 4.869 4.344 5.047 1.478 1.693 1.652 nan nan 3.466 nan 2.959 3.639 2.015 2.967 1.123 0.918 2.284 2.944 2.456 1.668 0.824 1.562 0.211 1.509 1.785 1.773 0.521 1.346 1.729 1.281 1842 chr12 12865244 12882693 + 0 NA intron (NM_004064, intron 2 of 2) intron (NM_004064, intron 2 of 2) 3764 NM_004064 1027 Hs.238990 NM_004064 ENSG00000111276 CDKN1B CDKN4|KIP1|MEN1B|MEN4|P27KIP1 cyclin dependent kinase inhibitor 1B protein-coding 7.826 4.512 7.060 12.751 8.470 4.312 5.850 2.228 0.267 3.504 1.712 7.771 22.924 5.989 0.174 2.291 2.613 6.769 10.673 nan 16.704 4.452 1.983 12.268 12.390 4.567 5.965 5.469 6.975 9.467 10.525 4.666 9.225 4.580 4.610 3.938 3.527 2.438 1.210 10.296 8.637 1.457 4.178 5.850 7.771 0.840 1.639 4.911 1.262 5031 chr20 60775474 60803472 + 0 NA TTS (NM_007232) TTS (NM_007232) 5850 NM_007232 11255 Hs.251399 NM_007232 ENSG00000101180 HRH3 GPCR97|HH3R histamine receptor H3 protein-coding 0.877 1.093 0.627 0.571 2.154 1.163 1.012 0.072 0.098 1.089 0.739 0.738 5.631 0.082 0.071 1.550 nan 0.107 0.179 1.135 1.098 2.212 0.716 0.476 0.594 0.395 0.645 2.242 1.959 0.497 0.376 0.606 0.761 0.248 0.268 0.477 0.599 2.378 1.234 0.627 2.016 0.051 0.110 1.012 0.738 0.236 1.353 0.197 0.092 752 chr1 193019417 193032848 + 0 NA TTS (NR_135615) TTS (NR_135615) 413 NR_135615 107397392 NR_135615 ENSG00000238754 SCARNA18B - small Cajal body-specific RNA 18B ncRNA 3.532 nan 2.876 1.594 1.733 0.774 1.804 1.384 0.277 2.254 1.147 1.934 3.445 1.372 0.117 2.857 3.169 5.795 6.683 4.956 4.362 3.633 1.458 12.523 12.539 3.634 nan 2.853 4.727 3.720 4.504 0.754 1.649 2.635 2.510 5.452 5.591 1.982 1.105 1.157 2.171 0.340 0.880 1.804 1.934 0.367 1.234 0.346 1.417 2899 chr15 61306893 61313919 + 0 NA intron (NM_134261, intron 1 of 10) MamRep434|DNA|TcMar-Tigger 211096 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 0.609 0.898 nan 0.049 0.327 0.250 0.251 0.084 0.155 0.083 0.082 0.369 0.046 0.071 1.181 1.534 7.422 1.926 0.325 0.288 nan 0.047 0.177 0.134 0.106 0.195 0.280 0.270 0.545 0.306 0.395 0.588 0.070 0.080 0.239 0.504 0.345 0.298 0.016 0.012 0.034 0.251 0.082 0.046 0.082 0.125 0.122 3045 chr16 7409519 7423826 + 0 NA intron (NM_145892, intron 1 of 12) intron (NM_145892, intron 1 of 12) 33921 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 0.871 nan 0.762 0.049 1.149 0.727 0.143 0.051 0.067 0.733 0.414 0.209 0.278 0.015 0.077 0.357 0.352 0.044 0.042 0.172 0.225 nan 0.133 0.143 0.140 0.149 nan 0.098 0.117 0.239 0.072 0.173 0.214 0.565 0.318 1.748 6.910 1.163 0.803 0.090 0.229 0.133 0.254 0.143 0.209 0.013 0.014 0.041 2.353 3138 chr16 49887566 49894009 + 0 NA intron (NM_001271620, intron 1 of 7) CpG 1043 NM_001271620 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 5.283 3.210 6.683 0.980 0.993 0.447 8.093 0.105 0.101 0.073 0.077 0.388 0.859 1.331 0.058 0.305 0.500 0.123 0.281 2.955 2.430 2.400 0.707 0.298 0.196 2.697 4.175 3.208 5.941 6.260 9.668 0.334 0.642 1.859 0.954 1.947 2.986 0.538 0.383 0.078 0.139 0.771 2.248 8.093 0.388 3.188 0.002 0.186 0.287 5033 chr20 60840625 60883587 + 0 NA intron (NM_001278649, intron 11 of 12) intron (NM_001278649, intron 11 of 12) -15846 NM_175573 11047 Hs.90107 NM_007002 ENSG00000130706 ADRM1 ARM-1|ARM1|GP110 adhesion regulating molecule 1 protein-coding 1.171 1.330 1.377 0.488 0.684 0.358 0.497 0.446 0.165 0.336 0.205 0.537 8.536 0.436 0.111 1.448 nan 0.722 0.868 1.004 0.948 1.048 0.471 2.464 2.478 0.679 1.170 1.989 2.461 0.762 0.707 0.599 0.943 0.242 0.227 0.779 0.883 0.807 0.511 1.189 3.711 0.084 0.348 0.497 0.537 0.188 0.571 0.210 0.215 312 chr1 54134753 54154441 + 0 NA intron (NM_147193, intron 1 of 9) intron (NM_147193, intron 1 of 9) 55280 NM_147193 148979 Hs.306691 NM_147193 ENSG00000174332 GLIS1 - GLIS family zinc finger 1 protein-coding 1.215 0.542 0.879 0.148 0.409 0.173 0.294 0.260 0.090 0.079 0.111 0.117 0.379 0.110 0.109 0.352 0.461 0.315 0.619 0.787 0.847 0.716 0.276 0.329 0.422 3.841 4.488 0.423 0.596 1.852 2.758 0.272 0.327 0.126 0.137 0.531 nan 0.403 0.498 0.070 0.109 0.029 0.126 0.294 0.117 0.639 0.061 0.066 0.275 7167 chr7 13863204 13900185 + 0 NA Intergenic L2|LINE|L2 144445 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding nan 1.006 nan 0.188 0.856 0.367 0.691 1.587 0.158 2.959 1.305 0.643 0.947 0.071 0.147 nan 0.524 0.871 0.923 0.694 0.797 1.060 0.414 0.312 0.323 1.795 2.143 0.741 0.733 0.295 0.149 0.092 0.158 1.984 2.399 0.211 0.437 1.307 0.756 0.039 0.209 0.459 0.183 0.691 0.643 0.108 0.487 0.036 0.053 370 chr1 72741796 72752619 + 0 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 1070 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding nan 1.054 1.328 1.596 1.928 1.068 1.612 0.584 0.179 1.565 1.118 3.418 6.590 0.521 0.110 1.677 2.652 0.869 1.527 8.424 nan 7.808 2.660 3.570 3.600 5.816 nan 3.057 4.956 2.277 3.310 0.284 1.021 1.383 0.621 1.778 2.679 2.356 1.423 4.197 1.734 0.423 1.036 1.612 3.418 0.081 0.702 0.539 0.809 3398 chr17 38801129 38806144 + 0 NA intron (NM_003079, intron 1 of 10) MIRb|SINE|MIR 467 NM_003079 6605 Hs.743978 NM_003079 ENSG00000073584 SMARCE1 BAF57|CSS5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding nan 4.899 4.433 2.684 9.727 5.218 4.179 3.331 0.097 3.292 1.956 7.231 10.621 2.820 0.107 11.700 10.853 10.949 13.817 nan 13.799 9.731 7.716 25.049 26.858 4.744 5.662 11.302 17.536 nan 11.364 8.915 12.134 7.348 7.522 10.288 4.730 4.000 2.481 4.519 3.891 0.908 2.152 4.179 7.231 1.666 2.595 1.916 2.027 567 chr1 155096125 155109983 + 0 NA intron (NM_182685, intron 1 of 3) intron (NM_182685, intron 1 of 3) 2705 NM_182685 1942 Hs.516664 NM_004428 ENSG00000169242 EFNA1 B61|ECKLG|EFL1|EPLG1|LERK-1|LERK1|TNFAIP4 ephrin A1 protein-coding nan nan 2.795 2.169 1.213 0.783 2.845 0.815 0.244 0.909 0.474 2.673 9.800 3.010 0.156 4.592 5.411 7.023 14.554 3.317 nan 2.077 0.715 1.458 1.562 1.700 2.565 4.175 6.895 1.417 1.250 7.096 10.190 1.304 1.362 2.142 3.714 1.324 0.694 1.102 1.655 0.233 1.349 2.845 2.673 0.567 3.123 6.882 0.579 4925 chr20 32102978 32123988 + 0 NA intron (NM_001032999, intron 1 of 10) AluJr|SINE|Alu 35555 NM_001032999 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 translocation partner 2 protein-coding 1.412 2.302 3.378 2.623 2.297 1.062 0.367 0.895 0.398 1.310 0.669 1.732 1.601 0.133 0.151 0.987 1.111 0.555 0.722 2.773 nan 4.901 2.036 1.374 1.407 2.175 2.703 4.752 5.606 1.942 1.177 0.422 0.644 1.125 2.077 0.923 nan 1.710 0.904 0.811 1.351 0.399 0.521 0.367 1.732 0.184 0.750 0.170 0.694 2974 chr15 85985822 86048605 + 0 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 93366 NM_006738 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 1.008 nan 1.003 0.158 0.457 0.205 0.283 0.335 0.143 0.108 0.152 0.255 0.388 0.066 0.078 0.621 0.615 0.687 1.294 0.306 0.371 0.512 0.134 0.209 0.173 0.525 0.838 0.601 0.816 0.763 0.420 0.713 0.903 0.631 0.894 1.447 3.914 0.604 0.389 0.057 0.085 0.218 0.156 0.283 0.255 0.157 0.178 0.893 0.309 1365 chr11 31775459 31792952 + 0 NA intron (NM_001288726, intron 10 of 11) intron (NM_001288726, intron 10 of 11) 41580 NM_001310161 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 0.878 0.953 nan 0.101 0.248 0.110 0.388 0.138 0.074 0.161 0.123 0.062 0.300 0.068 0.121 0.490 0.387 0.202 0.243 0.261 0.388 0.294 0.183 0.290 0.263 5.942 6.420 0.140 0.182 0.509 0.220 0.200 0.357 0.299 0.258 0.290 nan 1.022 0.667 0.120 0.112 0.055 0.158 0.388 0.062 0.079 0.035 0.051 0.114 7128 chr7 2028016 2043575 + 0 NA intron (NM_001013836, intron 14 of 18) intron (NM_001013836, intron 14 of 18) -55609 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 MAD1 mitotic arrest deficient like 1 protein-coding 1.471 1.699 2.228 0.787 0.346 0.134 0.971 0.206 0.088 0.141 0.126 1.489 nan 0.091 0.088 0.521 0.749 0.213 nan 5.065 4.104 nan 0.564 0.718 0.783 0.472 0.798 nan 6.333 0.409 0.338 0.282 0.376 0.300 0.334 0.572 1.010 0.608 0.448 4.567 0.314 0.067 0.215 0.971 1.489 0.126 2.302 0.044 0.285 1568 chr11 91955201 91976302 + 0 NA Intergenic Intergenic -119511 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 1.163 nan 0.626 1.037 0.194 0.116 1.039 0.419 0.129 0.122 0.122 0.091 5.812 0.493 0.131 7.399 9.537 2.431 nan 3.335 2.598 0.260 0.078 9.098 9.030 1.187 1.631 1.607 1.841 0.775 0.745 3.607 8.015 3.382 2.523 0.357 nan 1.122 0.693 1.575 0.249 1.244 0.509 1.039 0.091 0.023 0.534 5.105 0.146 3031 chr16 3027122 3040346 + 0 NA Intergenic Intergenic -3194 NM_001258450 9088 Hs.732385 NM_004203 ENSG00000127564 PKMYT1 MYT1|PPP1R126 protein kinase, membrane associated tyrosine/threonine 1 protein-coding 2.543 nan 3.927 1.886 1.434 0.821 1.160 0.424 0.222 0.766 0.421 0.906 4.906 1.092 0.099 1.854 2.179 0.927 1.131 2.026 2.030 nan 1.281 2.501 2.562 1.474 nan 1.449 2.118 3.942 3.957 0.749 1.082 3.699 4.143 1.961 4.605 1.855 0.927 2.363 2.437 1.293 0.496 1.160 0.906 1.255 0.845 0.207 1.886 1062 chr10 21260756 21293192 + 0 NA intron (NM_001173484, intron 3 of 6) L1M5|LINE|L1 -90443 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 0.744 0.865 0.649 0.184 0.251 0.119 0.130 0.132 0.114 0.082 0.086 0.124 0.211 0.421 0.093 0.512 0.367 0.368 0.573 0.211 0.244 4.702 1.417 0.134 0.106 0.148 0.218 0.278 0.310 0.186 0.090 0.317 0.632 0.510 0.554 0.262 0.769 0.342 0.274 0.005 0.162 0.111 0.096 0.130 0.124 0.012 0.080 0.226 0.084 7392 chr7 95923738 95961638 + 0 NA intron (NR_027662, intron 1 of 16) L1PA16|LINE|L1 8771 NM_014251 10165 Hs.489190 NM_014251 ENSG00000004864 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 member 13 protein-coding nan 1.042 nan 0.516 1.581 0.811 0.744 0.575 0.085 0.461 0.358 0.764 1.598 0.558 0.164 1.179 1.408 6.724 7.905 1.023 1.010 1.658 0.615 1.914 1.982 1.147 1.400 0.777 1.102 1.009 1.159 0.592 1.346 1.740 1.949 1.023 nan 1.316 0.874 0.763 0.509 0.463 0.636 0.744 0.764 0.323 0.198 0.491 0.458 2609 chr14 57188317 57289452 + 0 NA Intergenic Intergenic 33497 NM_172337 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding nan nan 3.068 0.339 0.591 0.321 0.473 0.090 0.093 0.126 0.147 0.308 0.285 0.049 0.112 0.287 0.232 2.400 2.100 0.462 0.542 0.837 0.320 0.421 0.436 0.137 0.208 0.689 0.608 7.227 6.767 0.229 0.332 0.906 1.283 7.893 15.311 nan 0.630 0.035 0.164 0.367 0.134 0.473 0.308 0.158 0.041 0.114 6.323 3866 chr18 60842707 60885650 + 0 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 122435 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 0.866 1.105 1.727 2.034 1.475 0.855 0.445 0.126 0.068 0.541 0.240 0.851 4.893 0.063 0.072 0.976 1.162 2.122 2.220 1.581 1.720 3.889 1.449 1.629 nan 0.203 nan 5.161 4.826 0.357 0.167 1.750 2.625 1.028 1.885 0.131 0.188 5.050 2.814 3.213 1.186 0.258 0.385 0.445 0.851 0.106 1.159 2.252 0.069 3781 chr18 45642537 45670478 + 0 NA intron (NM_001318841, intron 3 of 4) intron (NM_001318841, intron 3 of 4) 7173 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding nan 2.599 1.056 1.507 1.116 0.515 1.035 0.045 0.080 0.124 0.091 3.968 3.802 0.031 0.070 0.386 0.396 2.029 1.940 2.659 2.920 2.281 0.702 0.198 0.258 0.276 0.505 1.875 1.966 1.253 1.514 0.263 0.295 1.459 1.442 0.417 nan 2.759 1.663 3.794 3.137 0.338 0.082 1.035 3.968 0.132 0.247 0.039 0.482 718 chr1 184019360 184034444 + 0 NA intron (NM_001127394, intron 3 of 3) intron (NM_001127394, intron 3 of 3) 6117 NR_125335 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding nan nan 2.403 1.332 0.877 0.384 0.953 3.013 0.267 0.880 0.423 0.873 1.853 6.286 0.191 1.842 2.062 2.453 3.287 2.395 nan 1.332 0.464 nan 3.778 2.645 3.072 1.915 1.762 1.536 1.378 2.089 3.341 1.526 1.305 1.551 nan 1.066 0.675 0.772 0.842 0.341 0.611 0.953 0.873 0.303 0.444 0.676 0.695 7678 chr8 53358330 53387182 + 0 NA Intergenic Intergenic -50317 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18, C2H2C-type zinc finger protein-coding 1.044 nan 1.598 0.213 0.306 0.089 0.169 0.071 0.077 0.065 0.115 0.133 0.602 0.053 0.115 8.180 7.256 8.635 5.342 0.455 0.615 0.424 0.166 14.733 15.022 0.290 nan 0.515 0.574 0.524 0.162 6.023 7.069 0.177 0.348 0.245 0.464 0.762 0.626 0.012 0.089 0.029 0.080 0.169 0.133 0.050 0.148 5.280 0.069 4689 chr2 208254232 208278459 + 0 NA Intergenic Intergenic -128271 NM_134442 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 1.048 nan 1.159 1.746 2.450 1.294 0.846 0.349 0.098 0.674 0.504 2.111 5.094 0.049 0.081 0.373 0.501 1.225 1.497 0.713 0.830 0.303 0.079 0.424 0.421 4.319 4.326 0.689 0.802 0.793 0.402 0.242 0.414 1.895 2.157 1.185 2.314 0.762 0.397 2.445 0.456 0.678 0.101 0.846 2.111 0.073 0.893 0.135 0.282 868 chr1 216853613 216902448 + 0 NA intron (NM_001243511, intron 2 of 7) intron (NM_001243511, intron 2 of 7) 18784 NM_001243519 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR3|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 1.385 1.364 6.557 0.675 2.157 1.248 0.435 0.128 0.082 1.342 0.790 0.725 nan 0.058 0.112 0.425 0.337 0.449 0.654 1.047 1.156 nan 0.357 0.601 0.665 1.651 nan 0.357 0.422 3.182 2.940 0.110 0.198 3.710 4.072 4.700 6.720 0.985 0.775 0.019 0.096 0.729 1.430 0.435 0.725 0.296 0.293 0.057 2.319 853 chr1 212777795 212783932 + 0 NA intron (NM_001030287, intron 1 of 3) CpG -1107 NM_001674 467 Hs.460 NM_001674 ENSG00000162772 ATF3 - activating transcription factor 3 protein-coding 4.154 4.802 4.912 4.277 3.984 2.219 2.706 2.365 0.078 4.838 1.352 4.912 nan 2.050 0.137 1.446 1.903 7.987 14.383 4.114 3.217 nan 2.692 13.029 13.480 1.314 nan 2.668 6.308 1.552 2.148 0.879 1.426 2.363 2.719 1.765 4.740 1.603 1.308 1.616 3.015 0.281 1.683 2.706 4.912 0.699 1.786 0.342 1.232 2136 chr12 109740283 109750577 + 0 NA intron (NM_213596, intron 2 of 9) intron (NM_213596, intron 2 of 9) 1595 NM_213596 121643 Hs.528316 NM_213596 ENSG00000139445 FOXN4 - forkhead box N4 protein-coding 2.335 1.586 nan 1.238 2.450 1.503 0.799 0.180 0.108 0.599 0.302 2.290 2.207 0.704 0.094 1.657 2.357 0.648 2.097 2.561 2.418 4.057 1.542 0.497 0.647 1.353 1.965 1.624 2.223 1.846 2.309 1.403 3.672 3.812 3.248 1.234 1.620 2.148 1.032 0.726 6.859 1.322 2.878 0.799 2.290 0.537 0.020 2.963 0.831 2685 chr14 77562900 77578866 + 0 NA intron (NM_033426, intron 1 of 3) L2b|LINE|L2 6305 NM_033426 85457 Hs.709066 NM_033426 ENSG00000198894 CIPC KIAA1737 CLOCK interacting pacemaker protein-coding 2.961 1.324 3.555 1.569 1.281 0.592 1.505 1.193 0.219 0.824 0.656 1.553 2.638 1.143 0.151 1.404 1.648 1.543 2.030 2.844 2.616 1.761 1.109 3.962 4.232 1.796 2.622 2.219 nan 3.725 3.702 1.280 2.229 1.911 1.785 1.878 2.527 3.956 nan 4.500 1.772 0.387 1.109 1.505 1.553 0.608 0.778 0.469 0.596 3517 chr17 70109236 70182430 + 0 NA Intergenic Intergenic 28672 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box 9 protein-coding 1.361 0.818 0.907 0.393 0.839 0.406 0.298 0.357 0.161 0.201 0.156 0.538 1.041 0.039 0.105 4.649 5.414 9.815 7.793 0.522 0.575 1.575 0.473 3.399 3.605 nan 1.408 0.907 0.866 1.227 1.125 2.232 3.788 0.406 0.467 0.120 0.226 nan 0.572 0.084 0.119 0.090 0.081 0.298 0.538 0.172 0.073 2.121 0.074 1111 chr10 43571430 43590403 + 0 NA intron (NM_020630, intron 1 of 18) intron (NM_020630, intron 1 of 18) 8399 NM_020975 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51 ret proto-oncogene protein-coding 0.465 nan 1.686 2.794 0.184 0.101 0.135 0.079 0.034 0.139 0.061 0.044 0.769 0.098 0.047 0.573 0.960 0.448 0.559 0.267 0.202 4.286 1.098 0.151 0.168 0.065 0.161 3.228 2.969 0.145 0.054 0.109 0.167 0.344 0.259 0.130 0.130 2.209 1.011 0.193 0.075 0.025 0.016 0.135 0.044 0.036 1.882 0.031 0.033 1878 chr12 26841079 26847964 + 0 NA intron (NM_002223, intron 10 of 56) intron (NM_002223, intron 10 of 56) 141610 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding nan nan nan 0.312 0.269 0.106 0.187 0.282 0.023 0.298 0.301 0.047 0.421 0.095 0.102 0.270 0.187 0.482 0.895 0.428 0.463 10.890 1.905 0.740 0.844 0.408 0.635 0.932 0.732 0.407 0.187 0.264 0.518 0.938 1.768 0.365 0.988 0.888 0.505 0.063 0.108 0.139 0.058 0.187 0.047 0.097 0.766 0.172 0.351 7269 chr7 44251225 44327924 + 0 NA intron (NM_172079, intron 5 of 19) intron (NM_172079, intron 5 of 19) 48996 NM_006555 10652 Hs.520794 NM_006555 ENSG00000106636 YKT6 - YKT6 v-SNARE homolog (S. cerevisiae) protein-coding 2.261 1.745 nan 0.315 0.379 0.184 0.606 0.124 0.082 0.559 0.425 0.510 0.605 0.092 0.100 0.671 0.870 0.251 0.357 2.065 1.851 2.464 0.685 0.577 0.591 0.370 0.671 1.646 2.104 2.110 2.335 0.387 0.403 1.158 1.089 0.804 1.562 1.682 0.930 1.715 0.255 0.265 0.187 0.606 0.510 0.544 0.232 0.050 0.619 8224 chr9 101190233 101207781 + 0 NA intron (NM_005458, intron 7 of 18) intron (NM_005458, intron 7 of 18) -181004 NM_018421 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 1.007 0.700 0.955 0.076 0.539 0.336 0.189 0.080 0.100 0.081 0.138 0.055 0.330 0.086 0.063 0.168 0.109 0.177 0.205 0.395 0.412 0.449 0.155 0.155 0.148 0.262 0.398 0.297 nan 2.335 2.056 0.158 0.159 0.248 0.297 1.471 5.283 nan 0.424 0.013 0.040 0.032 0.041 0.189 0.055 0.143 0.040 0.034 1.894 3943 chr19 4057816 4068230 + 0 NA intron (NM_015898, intron 1 of 2) intron (NM_015898, intron 1 of 2) 2504 NM_001317990 51341 Hs.591384 NM_015898 ENSG00000178951 ZBTB7A FBI-1|FBI1|LRF|TIP21|ZBTB7|ZNF857A|pokemon zinc finger and BTB domain containing 7A protein-coding 3.054 1.881 7.757 1.989 2.151 1.285 2.301 1.503 0.217 1.974 0.852 3.852 4.643 2.995 0.080 2.211 3.460 2.203 2.944 3.314 2.750 1.582 0.742 4.990 4.778 1.839 2.625 5.773 nan 4.718 5.130 1.005 1.994 2.193 1.644 2.532 3.898 1.588 0.787 0.902 4.566 0.843 1.373 2.301 3.852 0.878 1.930 0.964 1.582 2918 chr15 67036481 67073275 + 0 NA intron (NR_027654, intron 4 of 4) intron (NR_027654, intron 4 of 4) 60204 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 0.704 0.642 nan 0.102 0.305 0.145 0.388 2.168 0.333 0.089 0.081 0.316 0.857 0.138 0.083 0.319 0.353 2.383 7.056 0.396 0.454 nan 0.093 0.259 0.252 0.762 1.140 0.189 0.267 0.549 0.368 0.302 0.418 0.205 0.471 0.307 0.579 0.420 0.427 0.202 0.100 0.026 0.259 0.388 0.316 0.124 0.053 0.091 0.142 3821 chr18 53195061 53225285 + 0 NA intron (NM_001330604, intron 3 of 19) intron (NM_001330604, intron 3 of 19) -32173 NM_001243231 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 0.868 0.905 0.162 0.336 0.186 0.315 0.156 0.049 0.394 0.281 0.288 0.550 0.449 0.095 0.750 0.596 4.699 2.732 0.939 1.081 4.246 1.474 2.345 2.339 0.856 1.026 0.493 0.515 0.528 0.301 0.443 0.772 3.885 4.181 0.351 0.652 nan 1.011 0.101 0.313 0.777 0.144 0.315 0.288 0.013 0.833 0.419 0.201 8234 chr9 110915689 110931931 + 0 NA Intergenic Intergenic -671809 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 0.664 0.655 nan 0.254 0.654 0.307 0.234 0.226 0.010 0.087 0.090 0.195 0.362 0.026 0.058 1.791 2.178 4.150 2.791 0.326 0.405 0.877 0.293 8.399 8.582 0.080 0.166 0.368 nan 0.430 0.190 3.114 3.641 0.261 0.270 0.103 0.188 nan 0.549 0.027 0.049 0.030 0.062 0.234 0.195 0.114 0.082 3.276 0.031 6454 chr5 134811729 134849557 + 0 NA Intergenic Intergenic 40996 NM_006161 4762 Hs.248149 NM_006161 ENSG00000181965 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 2.488 1.016 nan 0.123 0.690 0.331 1.754 0.081 0.093 0.096 0.077 2.726 1.320 0.057 0.088 0.284 0.279 0.351 0.979 3.183 3.419 2.246 0.549 0.176 0.248 1.805 2.283 0.397 0.379 2.772 3.005 0.168 0.359 1.080 0.680 1.162 3.820 0.508 0.368 0.340 2.597 0.282 1.245 1.754 2.726 0.961 0.043 0.136 1.903 6509 chr5 149010640 149014335 + 0 NA 3' UTR (NM_001001669, exon 13 of 13) 3' UTR (NM_001001669, exon 13 of 13) 51352 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding nan 1.981 0.678 0.316 0.244 0.130 0.167 0.062 0.132 0.093 0.023 0.097 0.990 0.089 0.086 1.442 1.512 13.869 9.828 0.209 0.224 5.289 0.593 1.998 2.321 0.244 0.415 2.328 3.146 0.460 0.155 1.049 1.354 0.744 0.958 0.235 0.241 1.305 0.644 0.362 0.453 0.086 0.167 0.097 0.443 0.508 0.067 7900 chr8 120924269 120933755 + 0 NA intron (NM_001283012, intron 1 of 6) LTR64|LTR|ERV1 43117 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding nan nan nan 0.497 1.465 0.678 0.832 0.418 0.068 0.763 0.428 2.404 nan 0.091 0.092 0.360 0.222 0.202 0.309 1.503 1.700 5.561 2.943 nan nan 0.228 0.353 1.180 0.587 0.543 0.325 0.371 0.421 2.614 3.327 1.889 4.537 1.451 0.970 1.058 2.416 0.648 0.042 0.832 2.404 0.021 1.970 0.063 2.399 4994 chr20 49339638 49367912 + 0 NA intron (NM_032521, intron 1 of 2) intron (NM_032521, intron 1 of 2) 5694 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding nan nan 1.372 0.938 0.690 0.432 0.745 0.363 0.227 0.288 0.216 0.583 1.528 0.698 0.141 2.324 3.027 1.352 2.412 1.144 1.122 nan 0.469 1.388 1.365 0.814 1.316 1.831 2.409 nan 1.489 1.434 3.011 0.274 0.250 1.686 4.809 0.908 0.649 0.469 0.663 0.068 0.528 0.745 0.583 0.177 0.330 1.677 1.581 3012 chr16 632299 647735 + 0 NA promoter-TSS (NM_001172665) promoter-TSS (NM_001172665) -60 NM_001172666 57799 Hs.459630 NM_021168 ENSG00000197562 RAB40C RARL|RASL8C RAB40C, member RAS oncogene family protein-coding 2.750 nan 3.519 3.569 2.197 1.185 1.558 0.833 0.177 1.512 0.568 2.321 6.514 1.136 0.073 2.411 3.030 1.091 1.692 2.455 2.406 nan 1.673 4.505 4.399 1.114 nan 4.371 6.752 2.093 2.344 1.373 2.227 3.154 3.021 1.183 1.607 3.440 1.717 4.691 6.562 0.611 0.488 1.558 2.321 1.190 1.394 1.217 0.649 4962 chr20 44757160 44771708 + 0 NA Intergenic Intergenic 17541 NM_001322422 958 Hs.472860 NM_001250 ENSG00000101017 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule protein-coding nan nan 0.818 0.615 0.633 0.363 0.633 0.122 0.044 0.311 0.206 0.238 7.474 0.127 0.088 1.030 1.670 0.301 0.273 2.743 3.035 nan 0.284 0.319 0.321 0.611 0.943 2.258 2.664 nan 1.036 0.695 0.941 0.320 0.373 0.963 2.840 0.775 0.491 5.058 1.311 0.116 0.076 0.633 0.238 0.257 0.258 0.414 1.093 34 chr1 3235019 3286010 + 0 NA intron (NM_199454, intron 3 of 16) L1MEf|LINE|L1 -110633 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 1.311 nan 1.041 0.368 1.028 0.507 0.632 0.076 0.082 0.065 0.047 0.028 1.415 0.070 0.091 0.164 0.098 0.108 0.157 0.360 0.373 0.105 0.043 0.164 0.192 0.141 nan nan 0.163 nan 0.151 0.207 0.145 0.082 0.080 0.108 0.119 0.195 0.265 6.609 0.517 0.017 0.006 0.632 0.028 0.621 0.267 0.015 0.022 1410 chr11 47125073 47160584 + 0 NA intron (NM_001003678, intron 3 of 8) Tigger15a|DNA|TcMar-Tigger 55848 NM_001242832 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding nan 1.925 1.054 1.281 1.744 0.963 0.524 0.139 0.104 0.195 0.224 1.254 0.947 0.073 0.125 0.666 0.744 0.690 0.687 1.036 1.057 4.060 1.179 0.373 0.416 0.614 0.901 1.272 1.560 0.298 0.190 1.044 1.595 1.069 1.119 0.371 nan 1.682 0.960 1.122 2.715 0.507 0.101 0.524 1.254 0.036 0.371 2.000 0.269 3457 chr17 49229760 49236614 + 0 NA intron (NM_001018136, intron 2 of 7) intron (NM_001018136, intron 2 of 7) 2267 NM_000269 4830 Hs.463456 NM_000269 ENSG00000239672 NME1 AWD|GAAD|NB|NBS|NDKA|NDPK-A|NDPKA|NM23|NM23-H1 NME/NM23 nucleoside diphosphate kinase 1 protein-coding 3.885 1.644 nan 1.814 1.861 1.066 1.394 1.193 0.117 1.227 0.893 1.828 2.481 2.479 0.132 3.101 3.067 2.131 2.873 4.063 nan 3.885 1.403 7.046 7.411 2.621 3.806 5.154 nan 9.415 10.724 2.121 4.003 3.707 3.370 4.056 6.954 2.661 1.769 0.826 1.285 0.415 1.191 1.394 1.828 1.246 1.356 1.027 1.936 7531 chr7 148578618 148583032 + 0 NA promoter-TSS (NM_001203249) promoter-TSS (NM_001203249) -224 NM_001203249 2146 Hs.444082 NM_004456 ENSG00000106462 EZH2 ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 9.188 3.640 6.562 6.946 7.420 3.911 7.441 3.150 0.809 4.202 2.014 11.515 11.514 8.331 0.273 7.605 8.745 8.222 10.434 12.047 9.855 9.930 5.270 18.910 19.699 4.448 6.310 6.053 11.235 8.529 10.305 7.251 13.371 13.008 14.398 11.540 8.325 4.714 nan 5.216 7.183 3.581 3.806 7.441 11.515 1.929 5.529 3.121 2.140 1069 chr10 23477423 23491150 + 0 NA Intergenic CpG 2826 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29 pancreas specific transcription factor, 1a protein-coding 0.348 0.461 0.468 0.065 5.504 3.131 0.103 0.125 0.153 0.080 0.095 0.061 0.258 0.064 0.060 0.195 0.092 0.093 0.172 1.253 0.972 0.150 0.093 0.104 0.069 0.095 0.169 0.101 0.140 0.159 0.097 0.040 0.067 0.025 0.040 0.084 0.120 0.138 0.152 0.161 0.503 0.014 0.011 0.103 0.061 0.044 0.007 0.027 368 chr1 72095816 72110356 + 0 NA intron (NM_173808, intron 4 of 6) intron (NM_173808, intron 4 of 6) 199609 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA nan 0.758 1.229 0.261 0.282 0.155 0.168 0.138 0.099 1.502 0.748 2.064 0.289 0.019 0.126 0.351 0.236 0.178 0.270 1.568 nan 9.436 3.376 0.425 0.442 2.267 nan 0.710 0.680 0.377 0.219 0.152 0.211 0.815 0.376 0.372 0.768 1.394 0.888 0.065 0.375 0.178 0.323 0.168 2.064 0.087 0.112 0.041 0.187 611 chr1 160323612 160346889 + 0 NA Intergenic Intergenic -1611 NM_005598 4807 Hs.30956 NM_005598 ENSG00000171786 NHLH1 HEN1|NSCL|NSCL1|bHLHa35 nescient helix-loop-helix 1 protein-coding 3.956 nan 8.914 0.106 0.528 0.173 0.655 0.171 0.091 0.108 0.156 0.405 0.380 0.168 0.098 1.706 3.984 0.620 0.717 1.565 nan 0.638 0.264 0.241 0.258 2.821 3.708 0.413 nan 6.234 7.185 0.916 1.348 2.149 1.929 4.557 12.770 0.683 0.497 0.601 0.410 0.682 3.977 0.655 0.405 1.422 0.039 0.542 4.137 3071 chr16 18934881 18940352 + 0 NA 5' UTR (NM_015092, exon 1 of 63) 5' UTR (NM_015092, exon 1 of 63) 110 NM_015092 23049 Hs.460179 NM_015092 ENSG00000157106 SMG1 61E3.4|ATX|LIP SMG1, nonsense mediated mRNA decay associated PI3K related kinase protein-coding 3.457 2.261 nan 5.153 3.627 1.732 2.421 2.453 0.235 1.318 0.799 2.766 8.097 2.742 0.098 3.176 3.205 2.566 3.492 3.376 3.174 9.352 3.087 10.136 10.786 1.875 2.726 10.514 17.689 nan 4.556 1.663 3.842 4.726 5.546 3.832 5.184 2.614 1.269 2.072 2.869 1.370 1.768 2.421 2.766 1.034 1.155 1.761 2.204 5054 chr20 62762889 62809524 + 0 NA Intergenic Intergenic -9621 NM_004535 4661 Hs.279562 NM_004535 ENSG00000196132 MYT1 C20orf36|MTF1|MYTI|NZF2|PLPB1|ZC2H2C1|ZC2HC4A myelin transcription factor 1 protein-coding 2.158 3.643 2.120 1.045 3.034 1.575 0.850 0.078 0.115 0.992 0.492 4.952 1.684 0.097 0.115 4.346 nan 0.107 0.139 4.360 4.437 2.868 1.210 0.477 0.566 0.720 1.068 2.743 3.813 2.430 2.394 1.518 1.850 0.900 0.673 2.037 3.647 1.887 1.207 5.298 4.401 0.202 0.680 0.850 4.952 0.522 1.076 1.023 1.455 3636 chr18 979819 991509 + 0 NA Intergenic Intergenic 80467 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 1.338 0.936 1.695 3.659 0.936 0.500 0.095 0.129 0.055 0.430 0.261 1.790 nan 0.047 0.133 0.287 0.211 0.217 0.291 1.964 2.234 nan 2.568 0.405 0.352 1.017 nan 4.936 5.244 nan 1.388 0.195 0.295 1.481 2.265 0.372 nan nan 2.048 1.308 0.236 0.369 0.362 0.095 1.790 0.433 2.158 0.144 0.095 1881 chr12 27862472 27865235 + 0 NA exon (NM_001190864, exon 1 of 7) exon (NM_001190864, exon 1 of 7) 147 NM_001190864 60488 Hs.714076 NM_021821 ENSG00000061794 MRPS35 HDCMD11P|MDS023|MRP-S28|MRPS28 mitochondrial ribosomal protein S35 protein-coding nan nan nan 7.951 2.108 1.620 2.917 0.977 0.077 2.964 1.246 4.460 8.642 5.684 0.204 3.398 3.729 5.916 9.242 7.490 6.950 12.161 3.799 19.403 19.676 4.448 4.889 4.688 8.000 6.149 6.185 2.407 5.041 2.786 2.432 6.132 5.818 4.462 2.399 1.472 1.599 0.379 1.992 2.917 4.460 10.665 4.173 1.391 1.840 4241 chr2 17969571 17982722 + 0 NA Intergenic Intergenic -21640 NM_001105569 343930 Hs.705359 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 1.150 0.620 0.781 0.087 0.222 0.136 0.437 0.103 0.098 0.430 0.174 0.105 0.480 0.069 0.120 0.397 0.388 0.227 0.490 0.512 0.468 0.710 0.217 0.265 0.332 0.389 0.726 0.499 nan 1.021 0.709 0.228 0.521 0.051 0.100 0.382 nan 3.152 1.817 0.669 0.162 0.028 0.267 0.437 0.105 0.346 0.031 0.231 0.297 4468 chr2 111877340 111881893 + 0 NA intron (NM_207003, intron 1 of 4) CpG-15379 1125 NM_001204111 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 6.933 nan 6.638 6.826 3.402 2.354 3.429 2.328 0.177 2.564 1.718 6.831 16.582 1.998 0.058 6.323 7.508 7.530 11.378 10.612 nan 9.080 3.602 12.050 11.937 1.545 2.701 9.781 15.332 4.095 6.368 3.813 7.950 2.940 2.793 3.937 3.402 2.340 1.513 4.548 5.027 0.920 2.766 3.429 6.831 1.362 3.115 2.717 1.111 2042 chr12 80075119 80088145 + 0 NA intron (NM_002583, intron 2 of 6) intron (NM_002583, intron 2 of 6) 3158 NM_002583 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 2.098 2.293 2.022 2.379 1.830 0.974 1.362 2.664 0.360 1.302 0.993 1.488 4.065 1.714 0.110 1.863 2.493 2.730 4.802 3.627 3.389 3.970 1.327 6.648 6.559 1.941 2.792 5.832 8.395 2.773 3.228 1.045 3.040 4.319 5.787 2.350 2.893 1.705 1.281 1.683 1.636 1.249 0.878 1.362 1.488 0.628 1.309 0.986 0.796 1057 chr10 18895999 18906803 + 0 NA intron (NM_182543, intron 5 of 10) intron (NM_182543, intron 5 of 10) 39165 NM_182543 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase family member 6 protein-coding nan 1.006 0.816 0.721 0.457 0.222 0.119 0.903 0.373 0.232 0.173 0.397 0.731 0.059 0.083 0.430 0.450 0.288 0.487 0.240 0.304 6.388 2.900 0.244 0.183 1.012 1.451 1.704 1.537 0.248 0.186 0.136 0.164 0.217 0.365 0.348 0.879 0.618 0.366 0.067 0.057 0.026 0.073 0.119 0.397 0.073 1.240 0.018 0.140 1923 chr12 46116875 46129226 + 0 NA promoter-TSS (NM_152641) promoter-TSS (NM_152641) -442 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|p200 AT-rich interaction domain 2 protein-coding 5.145 nan 3.346 4.520 5.350 3.077 3.568 2.622 0.300 2.111 1.660 5.396 4.654 2.859 0.141 5.941 7.075 6.764 7.863 11.013 9.960 6.250 3.488 19.245 19.603 4.120 4.723 5.617 9.435 7.430 7.875 3.761 7.983 5.742 5.730 7.230 5.857 2.550 1.356 4.466 5.474 1.538 2.759 3.568 5.396 1.340 2.377 3.181 2.500 7221 chr7 27134606 27157790 + 0 NA 3' UTR (NM_030661, exon 3 of 3) 3' UTR (NM_030661, exon 3 of 3) -3804 NM_006735 3199 Hs.445239 NM_006735 ENSG00000105996 HOXA2 HOX1K|MCOHI homeobox A2 protein-coding 2.211 1.373 1.104 0.308 0.912 0.547 0.503 0.240 0.035 0.531 0.325 0.560 1.407 2.695 0.169 12.954 18.729 6.530 nan 1.152 1.252 1.206 0.388 2.027 1.981 1.222 1.835 1.630 1.686 1.177 1.104 3.845 8.003 2.455 1.692 0.349 nan 0.985 0.585 0.453 0.845 1.071 1.542 0.503 0.560 0.169 0.018 3.092 0.225 7297 chr7 57545895 57556181 + 0 NA Intergenic HSATII|Satellite|Satellite 41155 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding nan 3.957 3.559 0.476 1.105 0.875 0.837 0.468 5.651 0.605 1.566 0.307 1.577 0.296 1.654 1.156 0.490 0.362 0.532 0.876 1.324 0.475 0.347 0.725 0.512 1.089 1.453 0.695 0.823 1.468 0.450 0.564 1.047 0.427 0.688 0.616 0.997 0.361 0.674 0.223 0.449 0.275 0.232 0.837 0.307 0.196 0.175 0.425 0.413 2983 chr15 90539813 90553622 + 0 NA intron (NM_198526, intron 1 of 4) intron (NM_198526, intron 1 of 4) 1994 NM_198526 374655 Hs.459311 NM_198526 ENSG00000140548 ZNF710 - zinc finger protein 710 protein-coding nan nan nan 1.001 1.884 0.951 1.316 0.934 0.164 1.040 0.592 3.683 3.765 1.067 0.101 2.073 2.897 1.819 2.247 2.491 1.930 nan 0.438 8.854 9.173 0.812 1.242 3.673 4.154 nan 1.659 1.620 2.863 0.914 0.674 1.139 nan 0.756 0.498 0.981 1.678 0.219 0.571 1.316 3.683 0.525 0.867 0.851 0.313 4601 chr2 174822620 174832572 + 0 NA intron (NM_001017371, intron 1 of 4) intron (NM_001017371, intron 1 of 4) 1351 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 5.608 4.377 5.158 4.723 6.480 3.475 4.810 3.239 0.418 2.674 1.308 6.986 10.313 3.886 0.081 4.570 4.670 5.196 7.629 6.917 6.709 4.279 2.295 10.676 10.896 3.481 4.352 13.539 18.950 6.933 6.997 3.439 6.358 3.327 2.982 5.666 5.875 1.523 0.914 5.493 2.769 1.066 2.614 4.810 6.986 1.966 1.378 2.189 2.255 8305 chr9 133604330 133609592 + 0 NA intron (NM_007313, intron 1 of 10) L1ME3A|LINE|L1 17693 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding nan 0.978 4.913 7.048 7.377 3.688 0.258 0.250 0.183 3.577 1.779 4.153 0.690 0.041 0.109 0.307 0.555 0.512 0.793 1.580 1.843 8.391 3.329 0.173 0.274 0.535 0.724 4.757 6.003 1.181 0.958 0.182 0.304 7.131 10.251 0.437 0.907 4.175 1.484 0.074 0.288 2.706 0.660 0.258 4.153 0.239 2.965 0.089 0.258 8168 chr9 79622818 79634906 + 0 NA Intergenic Intergenic -5709 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding nan nan nan 1.154 0.482 0.293 1.724 0.060 0.041 0.156 0.152 6.533 1.740 0.046 0.079 0.162 0.067 0.588 nan 1.073 nan 1.327 0.303 0.233 0.225 0.115 0.189 0.567 0.743 0.169 0.086 0.072 0.146 0.732 0.558 0.057 0.168 1.677 0.986 0.220 0.100 0.071 0.098 1.724 6.533 0.032 0.369 0.035 0.051 3934 chr19 1847034 1865587 + 0 NA intron (NM_031918, intron 1 of 1) intron (NM_031918, intron 1 of 1) 7254 NM_031918 83855 Hs.136280 NM_031918 ENSG00000129911 KLF16 BTEB4|DRRF|NSLP2 Kruppel like factor 16 protein-coding 3.480 1.437 3.661 1.864 2.523 1.200 3.622 1.000 0.190 0.734 0.359 2.557 3.063 1.983 0.078 3.831 4.482 2.441 3.805 2.593 2.757 2.449 1.401 5.554 5.350 1.858 2.922 2.469 nan 7.259 8.314 1.540 2.306 3.360 3.444 3.581 4.820 1.900 1.092 1.631 2.284 1.072 0.679 3.622 2.557 1.542 1.359 0.909 2.267 601 chr1 158968100 158983154 + 0 NA Intergenic Intergenic -4055 NM_005531 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding nan nan 0.837 0.047 0.559 0.319 0.077 3.458 0.267 0.322 0.256 0.032 0.326 0.029 0.115 0.347 0.157 2.256 5.805 0.281 nan 0.105 0.064 0.086 0.077 0.374 0.494 0.503 0.948 0.229 0.124 0.237 0.318 0.061 0.078 0.232 0.499 1.711 1.038 0.038 0.107 0.006 0.021 0.077 0.032 0.013 0.460 0.072 0.091 2252 chr13 27578404 27592224 + 0 NA Intergenic Intergenic -114356 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 1.017 0.886 1.401 0.814 0.205 0.147 0.381 0.109 0.128 0.149 0.209 1.387 1.061 0.039 0.062 1.540 2.910 0.235 nan 3.322 2.653 2.767 0.731 0.191 0.187 0.970 1.331 2.599 3.061 5.211 6.069 0.627 1.105 0.194 0.099 0.401 0.663 1.050 0.653 0.486 0.845 0.034 0.249 0.381 1.387 0.302 0.919 0.523 0.204 2506 chr14 29119878 29132902 + 0 NA Intergenic Intergenic 108135 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 0.943 0.919 0.932 0.960 0.270 0.228 0.609 0.120 0.099 0.168 0.109 0.377 0.758 0.041 0.141 0.192 0.141 0.258 0.353 0.441 0.590 11.309 5.295 0.243 0.226 0.445 0.522 0.691 0.795 0.702 0.317 0.115 0.117 2.292 2.701 0.195 0.222 0.437 0.506 0.074 0.403 0.411 0.091 0.609 0.377 0.022 0.078 0.015 0.029 6461 chr5 137908773 137912890 + 0 NA intron (NM_004134, intron 1 of 16) intron (NM_004134, intron 1 of 16) 487 NM_004134 3313 Hs.184233 NM_004134 ENSG00000113013 HSPA9 CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4 heat shock protein family A (Hsp70) member 9 protein-coding 5.795 5.182 nan 6.390 10.583 5.732 3.906 4.663 0.356 2.306 1.116 8.985 15.164 8.492 0.325 7.091 6.543 11.033 15.376 8.682 9.743 10.568 8.783 23.904 25.907 6.193 7.128 12.334 15.164 11.858 11.768 14.957 18.102 9.713 13.544 9.228 9.211 4.420 2.094 4.063 8.386 2.295 6.006 3.906 8.985 1.265 5.516 4.842 3.164 3122 chr16 33191857 33207406 + 0 NA Intergenic Intergenic -5952 NM_001099687 729355 Hs.592038 NM_001099687 ENSG00000261509 TP53TG3B TP53TG3E|TP53TG3F TP53 target 3B protein-coding 0.369 0.425 0.334 0.123 2.891 1.433 0.156 0.116 0.052 0.195 0.124 0.701 2.597 0.639 0.095 0.239 0.142 0.127 0.199 0.829 0.726 1.001 0.246 0.265 0.219 0.415 0.527 4.407 4.861 0.359 0.152 0.123 0.179 0.043 0.081 0.076 0.118 0.210 0.249 4.359 0.052 0.043 0.046 0.156 0.701 0.100 1.538 0.038 0.064 3368 chr17 33401554 33428302 + 0 NA intron (NR_037713, intron 1 of 6) intron (NR_037713, intron 1 of 6) 1420 NR_037713 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding nan 1.302 0.886 0.192 0.847 0.406 0.623 0.412 0.163 0.639 0.325 0.756 1.509 0.408 0.112 1.780 1.423 1.369 1.437 nan 1.027 2.117 0.620 1.400 1.370 0.717 1.070 0.940 1.280 nan 0.366 0.393 0.633 1.562 3.147 0.246 0.534 1.557 0.893 0.419 0.420 0.297 0.176 0.623 0.756 0.211 0.685 0.189 0.073 2401 chr13 100601675 100655001 + 0 NA Intergenic Intergenic -4160 NM_033132 85416 Hs.508570 NM_033132 ENSG00000139800 ZIC5 - Zic family member 5 protein-coding 2.926 6.213 2.609 5.139 0.466 0.205 7.791 0.225 0.084 3.139 1.561 0.267 11.310 0.783 0.086 0.513 0.258 0.710 1.154 5.149 4.491 6.712 2.643 1.372 1.321 1.233 nan 1.666 2.842 1.283 1.893 0.155 0.192 10.758 9.165 0.156 nan 1.252 0.761 3.797 2.639 3.199 3.168 7.791 0.267 0.836 0.450 0.032 0.046 1043 chr10 14878027 14882089 + 0 NA promoter-TSS (NM_001029954) promoter-TSS (NM_001029954) -75 NM_001029954 441549 Hs.559067 NM_001029954 ENSG00000185267 CDNF ARMETL1 cerebral dopamine neurotrophic factor protein-coding nan 3.617 6.207 4.329 3.235 1.815 2.237 4.019 0.514 1.963 0.480 4.770 5.296 2.113 0.196 5.535 6.175 6.732 10.165 6.840 5.799 15.400 7.302 5.892 6.714 4.786 6.118 5.370 9.243 4.803 5.731 2.128 4.194 4.564 5.154 6.648 5.740 3.159 1.770 0.819 1.745 0.699 2.255 2.237 4.770 0.667 2.272 1.164 1.644 7370 chr7 91259998 91273374 + 0 NA Intergenic Intergenic 243348 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding nan 0.964 nan 1.267 1.116 0.736 0.468 0.157 0.048 0.385 0.307 2.876 1.582 0.071 0.112 0.375 0.278 0.262 0.292 1.095 1.004 6.867 3.438 0.242 0.297 0.772 1.044 3.185 2.509 0.418 0.183 0.202 0.494 0.465 0.518 0.249 nan 1.190 1.067 1.366 0.212 0.071 0.077 0.468 2.876 0.051 1.787 0.111 0.249 2248 chr13 27085403 27119927 + 0 NA Intergenic Intergenic -29175 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WAS protein family member 3 protein-coding 1.128 0.874 1.611 0.201 0.180 0.099 0.122 0.114 0.125 0.182 0.125 0.322 0.257 0.047 0.072 1.677 1.607 0.273 nan 0.420 0.469 1.356 0.278 0.074 0.077 0.898 1.327 0.220 0.269 3.291 3.342 0.773 0.996 0.123 0.238 2.445 7.150 1.026 0.814 0.018 0.067 0.022 0.154 0.122 0.322 0.104 0.059 0.441 1.744 4957 chr20 43319872 43332425 + 0 NA Intergenic Intergenic -17337 NM_001323370 8839 Hs.592145 NM_003881 ENSG00000064205 WISP2 CCN5|CT58|CTGF-L WNT1 inducible signaling pathway protein 2 protein-coding nan nan 0.896 0.580 0.387 0.205 0.303 0.895 0.155 0.100 0.097 0.228 0.541 0.096 0.087 0.696 0.726 0.218 0.350 0.356 0.363 nan 0.230 0.344 0.373 0.664 1.114 0.436 0.598 nan 4.616 0.378 0.548 0.166 0.171 1.853 4.719 0.448 0.404 0.114 0.106 0.102 0.303 0.228 0.140 0.121 0.229 1.633 7660 chr8 42395486 42411500 + 0 NA intron (NM_001135675, intron 2 of 3) intron (NM_001135675, intron 2 of 3) -6137 NM_006749 6575 Hs.653173 NM_006749 ENSG00000168575 SLC20A2 GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1 solute carrier family 20 member 2 protein-coding 1.867 nan 2.409 1.528 1.303 0.557 1.459 1.485 0.223 0.664 0.337 1.788 2.656 1.463 0.138 1.823 2.165 1.812 2.772 3.021 2.824 2.332 1.025 4.145 3.977 1.296 1.918 1.644 2.351 2.942 3.015 0.744 1.673 2.254 2.541 2.625 2.543 2.859 1.365 0.754 1.894 0.487 0.286 1.459 1.788 0.240 1.662 0.331 0.968 1951 chr12 53334870 53352113 + 0 NA non-coding (NR_045962, exon 1 of 9) non-coding (NR_045962, exon 1 of 9) 159 NR_045962 3856 Hs.533782 NM_002273 ENSG00000170421 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding nan 1.657 1.133 2.133 1.592 0.838 0.653 0.257 0.159 0.775 0.474 3.498 3.077 0.125 0.085 nan 4.627 2.522 3.226 3.377 nan 5.029 1.982 2.985 3.079 0.145 nan 7.662 nan 0.521 0.264 1.390 2.389 0.810 1.088 0.190 0.312 2.145 1.251 0.505 2.518 0.127 0.561 0.653 3.498 0.057 0.871 0.992 0.040 5326 chr3 13055871 13071508 + 0 NA intron (NM_001134382, intron 1 of 14) intron (NM_001134382, intron 1 of 14) -35153 NM_001330619 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding nan 1.197 1.198 0.782 0.751 0.422 0.270 0.165 0.021 0.389 0.130 0.475 0.558 0.041 0.081 0.429 0.631 0.296 0.391 0.501 0.579 1.941 0.336 0.395 0.313 0.406 0.643 1.954 2.138 5.727 6.689 0.293 0.282 1.147 1.163 1.238 3.057 1.159 0.713 1.080 0.746 0.207 0.269 0.270 0.475 0.803 0.496 0.019 0.848 5526 chr3 127307796 127320289 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR -3158 NM_004526 4171 Hs.477481 NM_004526 ENSG00000073111 MCM2 BM28|CCNL1|CDCL1|D3S3194|DFNA70|MITOTIN|cdc19 minichromosome maintenance complex component 2 protein-coding 4.897 nan 2.780 2.611 3.906 2.135 2.675 3.278 0.504 3.108 1.374 2.916 3.694 1.405 0.063 3.497 3.290 3.211 5.268 5.728 5.326 9.997 4.888 6.120 6.237 3.568 nan 3.567 5.623 8.101 8.938 5.588 7.499 1.839 2.376 5.016 5.797 2.742 1.511 3.449 3.078 0.390 1.673 2.675 2.916 0.964 1.243 1.921 2.083 1794 chr12 6711332 6728256 + 0 NA Intergenic AluSp|SINE|Alu -3195 NM_001273 1108 Hs.162233 NM_001273 ENSG00000111642 CHD4 CHD-4|Mi-2b|Mi2-BETA|SIHIWES chromodomain helicase DNA binding protein 4 protein-coding 3.019 nan nan 5.592 3.417 1.784 3.618 0.944 0.142 1.676 0.969 4.111 5.823 1.139 0.119 2.409 3.086 1.497 1.945 nan 6.627 6.820 2.314 3.873 3.893 2.568 3.385 4.946 5.034 5.323 4.589 2.012 3.299 2.306 2.041 2.675 nan 1.773 0.774 2.964 4.004 0.717 3.105 3.618 4.111 2.350 1.168 2.483 2.464 6877 chr6 99271468 99296397 + 0 NA exon (NM_005604, exon 1 of 1) exon (NM_005604, exon 1 of 1) 1352 NM_005604 5454 Hs.182505 NM_005604 ENSG00000184486 POU3F2 BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7 POU class 3 homeobox 2 protein-coding nan 1.873 nan 3.327 4.449 2.367 1.293 0.123 0.058 1.129 0.786 1.723 6.888 0.139 0.099 1.413 2.094 0.997 1.201 2.139 1.412 nan 1.149 0.939 0.932 1.166 nan 1.494 2.717 nan 2.461 0.909 2.435 0.929 0.603 0.673 1.081 1.120 0.706 0.405 2.364 0.149 0.248 1.293 1.723 0.019 1.093 0.944 0.486 1631 chr11 111241658 111277757 + 0 NA Intergenic Intergenic -9550 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 associating factor 1 protein-coding 0.737 1.174 0.857 0.265 2.662 1.462 0.206 0.112 0.041 0.186 0.207 0.729 1.335 0.043 0.108 2.129 nan 1.498 3.328 0.584 0.774 0.769 0.250 0.335 0.317 2.484 nan 0.722 0.523 0.437 0.243 0.947 1.574 0.855 1.028 0.192 0.419 0.857 0.512 1.434 0.136 0.249 0.157 0.206 0.729 0.531 0.222 0.896 0.051 5278 chr22 41089837 41143908 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR 41690 NM_005297 2847 Hs.248122 NM_005297 ENSG00000128285 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin concentrating hormone receptor 1 protein-coding 1.084 nan 1.020 0.720 2.544 1.250 0.466 0.184 0.139 0.360 0.285 0.870 1.838 0.124 0.121 0.286 0.244 0.266 0.776 0.740 0.689 1.895 0.539 0.172 0.205 0.892 nan 1.070 1.441 nan 0.727 0.201 0.236 2.278 3.207 0.492 1.154 0.872 0.461 0.842 0.749 1.127 0.034 0.466 0.870 0.433 0.111 0.057 0.328 1829 chr12 11800587 11808094 + 0 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 1552 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 4.044 3.244 5.084 12.486 5.219 2.778 2.607 1.565 0.136 4.473 2.268 8.557 13.722 3.685 0.188 4.397 5.555 7.358 10.056 nan 10.919 10.709 4.964 13.143 13.270 2.757 3.694 11.106 19.496 4.892 5.320 3.800 6.381 2.521 2.072 2.862 2.588 2.739 1.653 4.819 4.074 0.517 0.869 2.607 8.557 0.311 2.025 3.275 1.225 2755 chr14 96732096 96742446 + 0 NA Intergenic Intergenic 14724 NM_000710 623 Hs.525572 NM_000710 ENSG00000100739 BDKRB1 B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1 bradykinin receptor B1 protein-coding 1.853 0.921 nan 0.336 0.397 0.141 0.446 2.186 0.244 0.124 0.093 0.798 2.845 0.074 0.115 0.347 0.226 0.278 0.907 1.633 1.600 0.864 0.252 0.583 0.606 0.726 0.952 1.432 1.371 2.467 2.297 0.241 0.334 1.357 1.306 0.150 0.255 nan 0.776 0.322 0.345 0.189 0.071 0.446 0.798 0.393 3.215 0.067 0.095 2729 chr14 89874947 89899304 + 0 NA TTS (NR_036500) TTS (NR_036500) 3427 NR_036500 400236 Hs.585207 NR_036500 ENSG00000258920 FOXN3-AS1 - FOXN3 antisense RNA 1 ncRNA 3.865 1.746 nan 0.766 1.227 0.601 0.842 3.122 0.324 0.684 0.345 1.238 3.377 1.622 0.121 0.829 1.078 1.656 2.439 2.703 2.133 1.880 0.729 2.042 1.932 1.806 2.879 3.255 4.719 2.111 2.139 0.989 2.542 3.577 3.563 0.687 0.834 nan 1.359 1.580 0.708 1.036 2.239 0.842 1.238 0.292 0.797 2.114 0.135 5575 chr3 139876074 139937863 + 0 NA intron (NM_022131, intron 2 of 16) L2c|LINE|L2 252941 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 1.334 nan nan 0.347 1.173 0.590 0.458 0.471 0.138 0.302 0.309 0.648 0.470 0.035 0.074 0.380 0.245 1.219 0.745 1.079 1.065 5.315 1.439 0.216 0.232 4.946 5.530 0.737 0.593 nan 1.634 0.299 0.475 0.665 0.553 0.835 2.470 0.780 0.527 1.281 0.328 0.217 0.773 0.458 0.648 0.697 0.206 0.082 0.495 6897 chr6 109264001 109272138 + 0 NA intron (NM_032131, intron 12 of 17) Tigger15a|DNA|TcMar-Tigger -22763 NR_104137 101929716 NR_104137 ARMC2-AS1 - ARMC2 antisense RNA 1 ncRNA 3.419 nan nan 0.166 0.269 0.137 0.218 0.111 0.079 0.269 0.131 0.599 0.469 0.040 0.103 0.524 0.468 0.413 1.615 0.357 nan 1.232 0.632 0.248 0.308 5.629 5.784 2.194 3.855 nan 0.511 1.045 1.801 5.728 6.314 0.517 0.851 0.446 0.467 0.469 0.469 2.000 0.080 0.218 0.599 0.314 4.078 3.721 0.124 5505 chr3 119916831 119935796 + 0 NA intron (NM_153002, intron 2 of 8) L1MA9|LINE|L1 36829 NM_001168271 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 1.766 nan 1.188 0.130 0.355 0.251 0.403 0.378 0.129 0.205 0.205 0.152 0.336 0.029 0.107 0.671 1.203 0.337 0.283 0.519 nan 3.127 0.773 0.401 0.382 nan 2.043 0.385 0.427 5.756 5.827 0.296 0.365 0.181 0.168 2.835 5.947 0.774 0.734 0.040 0.094 0.041 1.040 0.403 0.152 0.179 0.161 0.104 2.979 7661 chr8 42574223 42601728 + 0 NA intron (NM_000749, intron 5 of 5) intron (NM_000749, intron 5 of 5) 35413 NM_000749 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 0.703 nan 0.669 0.130 0.324 0.140 0.343 0.098 0.147 0.125 0.122 0.800 0.385 0.067 0.117 0.403 0.405 0.384 0.855 1.379 1.534 1.453 0.498 0.287 0.315 0.178 0.265 0.271 0.287 1.315 1.128 0.163 0.211 0.145 0.141 0.718 2.106 0.798 0.725 0.061 2.781 0.052 0.058 0.343 0.800 0.081 0.100 0.050 0.530 1178 chr10 92961371 92982388 + 0 NA intron (NM_001257101, intron 1 of 9) MIR|SINE|MIR -8029 NM_001256549 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 0.704 1.569 0.988 2.473 3.946 2.041 0.079 0.306 0.139 1.193 0.617 4.379 3.063 0.140 0.094 0.436 0.612 0.749 1.025 4.007 3.918 4.454 1.616 0.814 0.792 0.549 0.822 nan 6.622 0.316 0.246 0.308 0.632 1.024 0.790 0.535 0.938 2.201 1.164 2.087 2.540 0.205 0.121 0.079 4.379 0.116 0.397 0.292 0.212 2507 chr14 29155589 29161560 + 0 NA Intergenic Intergenic 75951 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 0.965 1.011 0.996 1.622 0.200 0.134 0.173 0.207 0.080 0.433 0.358 0.081 0.343 0.071 0.134 0.244 0.090 0.170 0.184 0.339 0.426 9.948 7.790 0.292 0.197 0.293 0.576 0.260 0.359 0.536 0.204 0.112 0.188 3.917 4.645 0.190 0.286 1.758 0.866 0.591 1.771 1.111 0.071 0.173 0.081 0.034 0.119 0.034 0.020 1810 chr12 7789664 7800131 + 0 NA Intergenic HUERS-P3-int|LTR|ERV1 23602 NM_005889 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 0.571 nan nan 0.143 0.247 0.107 0.135 0.051 0.015 0.088 0.162 0.103 0.574 0.125 0.115 1.425 0.949 3.217 2.657 nan 0.524 0.468 0.250 10.839 11.656 0.162 0.233 0.152 0.142 0.870 0.816 1.204 1.467 0.138 0.135 0.184 nan 0.206 0.271 0.016 0.045 0.030 0.135 0.103 0.165 0.039 0.409 0.023 311 chr1 54082862 54098564 + 0 NA intron (NM_147193, intron 1 of 9) intron (NM_147193, intron 1 of 9) 109164 NM_147193 148979 Hs.306691 NM_147193 ENSG00000174332 GLIS1 - GLIS family zinc finger 1 protein-coding 1.324 0.616 0.883 0.100 0.331 0.265 0.171 0.248 0.113 0.091 0.102 0.094 0.490 0.055 0.081 0.373 0.444 0.309 0.401 0.554 0.648 0.370 0.229 0.357 0.330 3.285 3.310 0.303 0.508 1.545 1.627 0.267 0.348 0.088 0.103 0.369 nan 0.515 0.484 0.068 0.125 0.016 0.110 0.171 0.094 0.507 0.045 0.032 0.172 3256 chr17 7106915 7125779 + 0 NA intron (NR_135527, intron 3 of 20) AluSg4|SINE|Alu -4097 NM_001270447 37 Hs.437178 NM_000018 ENSG00000072778 ACADVL ACAD6|LCACD|VLCAD acyl-CoA dehydrogenase, very long chain protein-coding 2.369 1.560 1.494 0.731 2.246 1.327 2.543 0.431 0.060 0.403 0.218 1.669 2.779 7.248 0.327 2.208 3.025 0.763 1.348 4.765 4.458 2.542 1.594 0.852 0.855 1.252 1.878 2.336 3.946 2.043 1.765 0.695 1.033 0.791 0.675 4.274 10.533 0.981 0.617 1.619 0.929 0.188 0.446 2.543 1.669 1.130 1.581 0.445 4.862 4293 chr2 38618376 38637670 + 0 NA Intergenic L1ME3A|LINE|L1 -22297 NM_001330462 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 0.799 nan nan 0.131 0.276 0.075 0.283 0.140 0.177 0.111 0.158 0.129 1.245 0.091 0.115 1.515 1.478 3.571 8.134 0.311 0.338 0.222 0.099 2.484 nan 0.200 0.400 0.283 0.258 nan 0.248 1.283 1.293 0.044 0.034 0.227 0.520 0.354 0.409 0.055 0.174 0.034 0.079 0.283 0.129 0.070 0.031 0.458 0.117 3421 chr17 43053157 43101863 + 0 NA Intergenic AluSq|SINE|Alu -31866 NM_006688 10882 Hs.134012 NM_006688 ENSG00000131094 C1QL1 C1QRF|C1QTNF14|CRF complement C1q like 1 protein-coding 1.731 1.217 nan 0.376 0.708 0.403 0.370 0.196 0.122 0.481 0.291 0.202 0.630 0.151 0.126 0.485 0.596 0.490 0.819 0.680 nan 2.256 0.586 0.782 0.855 0.747 1.162 4.002 nan 1.778 1.609 0.443 0.524 0.816 0.900 1.138 2.841 1.514 0.892 0.196 0.242 0.203 0.074 0.370 0.202 0.818 1.398 0.101 0.734 5508 chr3 121963832 121981139 + 0 NA intron (NM_001178065, intron 1 of 6) intron (NM_001178065, intron 1 of 6) 69304 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1 calcium sensing receptor protein-coding 0.718 nan 0.540 0.137 0.444 0.156 0.136 0.144 0.102 0.189 0.151 0.028 1.671 0.006 0.076 0.455 0.239 0.192 0.258 0.382 0.435 0.245 0.153 0.298 0.272 0.216 nan 0.432 0.492 0.593 0.288 0.249 0.276 0.146 0.154 0.153 0.303 1.811 1.115 6.959 2.937 0.033 0.165 0.136 0.028 0.023 0.041 0.034 0.036 1887 chr12 28177944 28181946 + 0 NA Intergenic Intergenic -55029 NM_198965 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 3.185 nan nan 0.307 0.174 0.040 0.307 0.116 0.040 0.121 0.103 0.061 0.578 0.055 0.098 0.132 0.134 0.602 1.796 1.805 1.444 0.299 0.090 0.435 0.453 2.186 2.280 0.997 1.256 2.946 3.441 0.118 0.132 0.106 0.198 0.202 0.416 0.410 0.411 1.711 0.577 0.024 0.020 0.307 0.061 5.825 1.242 0.024 0.095 4258 chr2 25006703 25017730 + 0 NA TTS (NM_001013663) TTS (NM_001013663) -3768 NR_136184 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 2.703 1.285 2.165 1.968 2.524 1.128 1.223 0.970 0.145 1.135 0.768 3.967 6.707 2.107 0.130 2.774 2.483 2.391 3.408 5.187 4.867 3.772 1.872 6.023 7.018 2.053 2.816 3.429 nan 3.643 3.076 1.676 2.441 1.412 1.936 2.965 3.382 2.162 1.222 1.856 2.485 0.374 1.188 1.223 3.967 1.102 0.969 0.762 1.054 3627 chr17 80784644 80852436 + 0 NA intron (NM_005993, intron 13 of 38) intron (NM_005993, intron 13 of 38) -20609 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 1.015 1.115 1.278 0.592 0.556 0.248 0.819 0.205 0.136 0.533 0.271 2.151 6.255 0.113 0.104 0.962 nan 0.604 1.274 nan 1.422 1.521 0.377 0.565 0.558 0.488 0.789 3.267 4.039 0.231 0.246 0.684 1.041 0.769 0.786 0.367 0.553 1.374 0.831 1.971 8.277 0.138 0.587 0.819 2.151 0.279 0.691 0.433 0.130 8008 chr8 146124220 146128687 + 0 NA intron (NM_021061, intron 1 of 5) CpG 393 NM_001109689 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 8.358 3.773 nan 6.371 5.786 3.515 2.096 2.481 0.541 1.914 0.969 7.810 17.676 2.448 0.096 3.026 3.834 4.921 5.715 12.615 9.348 nan 3.237 11.341 12.283 2.437 3.261 3.363 5.636 4.537 6.255 3.034 6.117 4.978 3.902 4.767 4.688 3.305 1.927 4.628 8.528 0.811 2.074 2.096 7.810 1.476 5.010 2.094 1.603 5536 chr3 128897579 128905282 + 0 NA intron (NM_001127192, intron 1 of 4) intron (NM_001127192, intron 1 of 4) 1380 NM_001127196 7555 Hs.518249 NM_003418 ENSG00000169714 CNBP CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9 CCHC-type zinc finger nucleic acid binding protein protein-coding 7.094 nan 4.231 3.412 6.134 3.867 3.609 5.040 0.754 3.678 2.080 3.814 4.096 2.124 0.141 6.528 5.030 6.150 9.117 6.962 7.108 10.714 6.118 12.598 13.463 4.624 nan 4.590 8.367 14.784 16.357 5.194 8.233 4.062 4.863 10.948 7.969 3.314 1.800 2.345 1.955 0.717 2.132 3.609 3.814 1.307 1.320 1.570 2.816 638 chr1 165187599 165212487 + 0 NA intron (NM_177398, intron 4 of 8) MIR3|SINE|MIR 125435 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 2.602 nan 1.288 0.573 1.086 0.741 1.385 0.145 0.125 1.149 0.494 0.708 2.680 0.030 0.105 0.989 2.264 0.590 0.637 2.118 nan 0.554 0.213 0.127 0.125 0.635 0.880 1.543 nan 3.878 3.974 1.733 3.804 3.984 3.663 3.361 6.087 1.382 0.966 1.405 0.776 1.207 0.660 1.385 0.708 0.479 0.098 2.825 3.170 2482 chr14 21849043 21853545 + 0 NA intron (NM_007192, intron 1 of 25) intron (NM_007192, intron 1 of 25) 1131 NM_007192 11198 Hs.213724 NM_007192 ENSG00000092201 SUPT16H CDC68|FACTP140|SPT16|SPT16/CDC68 SPT16 homolog, facilitates chromatin remodeling subunit protein-coding 9.525 4.108 3.990 7.832 5.486 3.342 4.591 5.424 0.227 1.807 1.232 4.581 9.617 5.874 0.190 5.363 5.053 9.409 12.753 8.546 9.400 9.220 5.791 13.713 15.071 8.219 10.578 9.491 13.781 18.022 16.504 5.843 8.030 8.206 10.434 5.367 5.383 4.289 2.317 6.539 4.733 1.608 3.679 4.591 4.581 4.921 3.947 1.930 1.517 2727 chr14 89672102 89700166 + 0 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 197320 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 1.888 1.137 nan 0.518 0.831 0.409 0.511 0.255 0.178 0.857 0.341 2.300 1.486 0.042 0.120 0.302 0.279 0.264 0.527 1.061 1.231 0.903 0.565 0.407 0.453 2.182 2.811 2.385 3.777 0.767 0.557 0.141 0.322 1.055 0.858 0.207 0.382 nan 1.361 0.765 0.553 0.303 0.546 0.511 2.300 0.131 0.083 0.035 0.073 8128 chr9 37463912 37468524 + 0 NA promoter-TSS (NM_014872) promoter-TSS (NM_014872) -811 NM_014872 9925 Hs.161276 NM_014872 ENSG00000168795 ZBTB5 - zinc finger and BTB domain containing 5 protein-coding 4.976 9.519 4.882 5.577 4.299 2.048 4.434 2.880 0.527 2.063 1.171 4.800 12.003 5.813 0.225 3.401 3.604 7.597 9.262 7.046 4.622 12.072 5.385 10.399 9.792 2.725 3.567 5.847 10.174 5.421 5.761 2.961 5.474 7.794 8.292 5.066 5.529 5.102 2.839 5.045 4.139 1.678 3.610 4.434 4.800 0.693 1.951 2.829 1.302 4567 chr2 162270306 162282723 + 0 NA intron (NM_006593, intron 4 of 5) intron (NM_006593, intron 4 of 5) 3909 NM_006593 10716 Hs.210862 NM_006593 ENSG00000136535 TBR1 TBR-1|TES-56 T-box, brain 1 protein-coding 0.978 5.639 nan 0.628 0.531 0.297 0.282 0.120 0.013 0.205 0.205 0.414 1.098 0.174 0.063 0.455 0.307 0.532 0.739 0.822 0.848 1.204 0.526 0.607 0.586 0.340 0.583 0.270 0.285 0.847 0.855 0.310 0.418 0.215 0.187 0.644 1.090 0.812 0.482 0.040 0.086 0.027 0.336 0.282 0.414 0.062 0.432 0.085 1.716 2910 chr15 65595902 65597562 + 0 NA Intergenic Intergenic -17551 NM_001316944 54956 Hs.30634 NM_017851 ENSG00000138617 PARP16 ARTD15|C15orf30|pART15 poly(ADP-ribose) polymerase family member 16 protein-coding 4.099 4.752 nan 3.533 3.757 1.404 4.776 4.473 0.288 2.505 1.728 3.055 13.039 6.512 0.208 14.746 12.838 9.084 14.462 8.608 7.968 8.113 12.480 16.472 18.204 7.554 8.392 7.690 14.876 15.407 13.232 12.853 12.978 11.529 11.856 12.594 7.732 4.273 2.507 2.351 3.083 0.889 2.249 4.776 3.055 1.023 4.163 4.274 0.894 1991 chr12 63174249 63183138 + 0 NA intron (NM_020700, intron 4 of 9) intron (NM_020700, intron 4 of 9) 149972 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 1.155 0.661 1.243 0.220 0.299 0.193 0.202 0.625 0.221 0.158 0.273 0.149 0.402 0.037 0.092 3.966 4.043 8.581 6.588 0.396 nan 0.514 0.256 1.105 1.242 0.629 0.884 0.997 0.977 0.477 0.315 2.721 5.449 0.164 0.282 0.337 0.579 1.310 1.215 0.085 0.199 0.022 0.067 0.202 0.149 0.022 0.103 2.824 0.104 8369 chrX 12988069 13008308 + 0 NA Intergenic Intergenic 4962 NM_021109 7114 Hs.437277 NM_021109 ENSG00000205542 TMSB4X FX|PTMB4|TB4X|TMSB4 thymosin beta 4, X-linked protein-coding 1.663 nan 1.694 2.269 2.172 0.998 0.593 2.011 0.167 0.317 0.189 1.508 5.237 2.871 0.080 0.446 0.470 1.459 3.023 2.548 1.967 6.612 2.503 1.037 1.008 1.481 1.853 2.286 2.553 2.122 2.268 0.646 1.017 2.120 2.015 1.070 1.864 1.344 0.791 0.455 0.273 0.381 0.506 0.593 1.508 0.454 1.354 0.356 0.293 5475 chr3 114361925 114370900 + 0 NA intron (NR_121662, intron 3 of 6) MIRb|SINE|MIR -22620 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 1.020 nan 0.684 0.146 0.491 0.197 0.212 1.659 0.214 0.105 0.193 0.118 0.157 0.119 0.116 0.443 0.223 6.590 4.544 0.346 nan 0.470 0.274 0.305 0.270 nan 1.454 0.265 0.235 0.707 0.254 0.071 0.243 0.070 0.091 0.262 0.273 0.478 0.476 0.167 0.060 0.011 0.107 0.212 0.118 0.022 0.009 0.055 0.082 5855 chr4 26228222 26250505 + 0 NA Intergenic MIRb|SINE|MIR -81969 NM_203283 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 1.207 0.914 nan 1.826 1.282 0.588 0.963 0.108 0.080 1.140 0.621 2.667 2.524 0.044 0.082 0.343 0.145 0.219 0.337 1.797 1.802 1.999 0.598 0.288 0.252 0.899 1.162 2.071 2.167 2.450 2.396 0.135 0.305 1.018 1.124 0.724 1.409 nan 1.632 0.385 1.687 0.410 0.146 0.963 2.667 0.205 1.414 0.106 0.155 3180 chr16 75974158 75985425 + 0 NA Intergenic Intergenic 298156 NR_144545 54386 Hs.301419 NM_018975 ENSG00000166848 TERF2IP DRIP5|RAP1 TERF2 interacting protein protein-coding 0.517 0.498 nan 0.110 0.440 0.227 0.918 0.054 0.129 0.152 0.155 0.131 0.217 0.038 0.069 1.046 0.848 0.069 0.085 0.386 0.491 8.107 4.113 0.453 0.436 0.125 0.174 0.389 0.378 0.536 0.349 0.332 0.672 0.070 0.044 0.104 0.162 0.877 0.751 0.020 0.112 0.009 0.064 0.918 0.131 0.165 0.009 0.341 0.055 3851 chr18 57042577 57063651 + 0 NA Intergenic Intergenic -26606 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding nan 1.053 1.065 0.465 0.334 0.115 1.146 0.062 0.061 0.453 0.295 0.705 1.131 0.010 0.059 0.341 0.256 0.173 0.284 1.309 1.728 1.711 0.404 0.465 0.486 0.200 0.361 1.392 1.411 1.042 0.596 0.171 0.182 5.051 5.723 1.181 3.259 nan 1.848 0.095 0.688 2.079 0.220 1.146 0.705 0.156 0.505 0.071 0.714 5767 chr3 189507049 189525612 + 0 NA intron (NM_001329146, intron 1 of 10) intron (NM_001329146, intron 1 of 10) 8881 NM_001114981 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 1.285 1.353 0.960 0.247 0.472 0.224 0.284 0.284 0.078 0.127 0.174 0.084 0.789 0.036 0.068 0.266 0.172 0.317 0.873 0.403 0.444 4.601 1.387 0.317 0.339 0.156 0.292 0.629 0.633 0.659 0.293 0.096 0.183 1.311 1.137 0.537 1.104 0.544 0.542 0.054 0.091 0.163 0.146 0.284 0.084 0.020 0.068 0.022 0.203 7687 chr8 59569540 59573468 + 0 NA intron (NM_003580, intron 1 of 30) intron (NM_003580, intron 1 of 30) 462 NM_001144772 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 11.120 6.373 5.522 3.261 5.730 3.103 7.228 2.740 0.205 3.105 1.912 7.311 9.836 5.459 0.130 9.446 11.657 9.014 13.818 19.087 18.428 10.084 5.754 8.583 8.082 5.838 nan 6.239 9.662 10.900 11.949 6.131 11.150 10.724 7.610 11.360 7.430 5.937 3.916 4.159 4.581 1.434 5.372 7.228 7.311 0.886 5.268 2.325 5.171 5263 chr22 38567401 38600236 + 0 NA Intergenic L2a|LINE|L2 -5982 NM_001199562 8398 Hs.170479 NM_003560 ENSG00000184381 PLA2G6 CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta phospholipase A2 group VI protein-coding 1.739 nan 1.321 1.363 1.967 1.012 1.066 1.019 0.210 0.566 0.302 2.158 1.942 1.172 0.126 3.718 4.202 2.477 3.120 1.809 1.703 1.770 0.785 2.290 2.478 0.892 nan 3.061 3.799 nan 1.096 0.833 0.902 1.572 2.420 0.926 1.435 1.672 0.879 1.232 0.897 0.337 0.282 1.066 2.158 0.445 2.258 0.458 0.481 6145 chr5 3749246 3756420 + 0 NA Intergenic Intergenic 156665 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 0.367 0.735 0.758 0.099 0.128 0.067 0.123 0.067 0.181 0.147 0.056 0.349 0.031 0.119 3.292 1.638 7.847 nan 0.469 0.541 0.089 0.042 0.020 0.065 0.209 0.236 nan 0.216 nan 0.355 0.628 0.948 0.063 0.041 0.103 0.155 0.160 nan 0.024 0.049 0.013 0.123 0.056 0.081 0.028 0.389 0.017 5342 chr3 21463340 21469100 + 0 NA intron (NM_024697, intron 6 of 7) intron (NM_024697, intron 6 of 7) 19002 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 0.561 0.639 0.557 0.061 0.051 0.028 0.156 0.314 0.057 0.054 0.262 0.084 0.111 0.019 0.076 0.184 0.144 9.059 6.214 0.207 0.207 0.083 0.054 0.199 0.137 0.413 0.629 0.308 0.397 nan 0.179 0.075 0.205 0.051 0.061 0.174 0.196 0.125 0.256 0.048 0.104 0.041 0.156 0.084 0.064 0.119 0.043 606 chr1 159747425 159753043 + 0 NA promoter-TSS (NM_001319658) promoter-TSS (NM_001319658) -502 NM_017823 54935 Hs.425801 NM_017823 ENSG00000158716 DUSP23 DUSP25|LDP-3|MOSP|VHZ dual specificity phosphatase 23 protein-coding nan nan 3.137 0.811 0.943 0.541 0.096 0.331 0.099 0.459 0.237 0.767 1.879 0.407 0.097 0.771 0.816 7.972 3.416 0.880 nan 1.599 0.418 0.936 0.758 0.524 1.170 1.957 2.958 0.710 0.541 1.140 1.983 1.436 1.577 0.552 0.813 0.639 0.545 0.385 1.996 0.372 0.269 0.096 0.767 0.070 0.054 0.821 0.132 5713 chr3 179369518 179374442 + 0 NA intron (NM_003940, intron 1 of 20) AluSx1|SINE|Alu 1047 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 (isopeptidase T-3) protein-coding 5.746 3.237 4.363 3.814 2.588 1.609 3.301 2.986 0.588 2.998 1.860 3.648 10.794 1.656 0.083 3.545 3.995 4.843 5.963 6.636 5.722 12.893 4.848 4.053 4.076 3.872 5.241 4.051 7.173 6.578 7.613 1.744 4.203 4.582 4.519 7.875 6.618 2.648 1.567 2.025 3.523 1.273 2.083 3.301 3.648 0.791 1.151 0.950 3.381 1656 chr11 113703150 113720774 + 0 NA intron (NM_001346260, intron 2 of 22) intron (NM_001346260, intron 2 of 22) 34330 NM_001346259 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 0.588 0.770 0.531 0.170 0.192 0.254 0.167 0.077 0.072 0.071 0.123 0.088 0.335 0.086 0.111 5.626 nan 2.723 2.247 0.561 0.637 0.338 0.154 0.822 0.866 0.386 nan 0.371 0.388 0.323 0.178 3.881 6.568 0.096 0.180 0.230 0.587 0.503 0.424 0.091 0.095 0.027 0.084 0.167 0.088 0.016 0.035 5.155 0.048 191 chr1 33113399 33121852 + 0 NA exon (NM_005610, exon 2 of 12) exon (NM_005610, exon 2 of 12) 666 NM_001135256 5928 Hs.16003 NM_005610 ENSG00000162521 RBBP4 NURF55|RBAP48|lin-53 RB binding protein 4, chromatin remodeling factor protein-coding 5.281 nan 4.508 8.737 4.982 2.943 3.818 1.795 0.315 3.453 1.650 8.631 8.961 3.864 0.167 5.984 4.610 5.735 7.505 9.911 9.728 nan 3.468 10.114 10.843 5.322 6.464 5.305 8.209 nan 6.363 5.281 6.829 3.071 4.375 7.535 6.376 3.112 nan 3.999 3.503 0.667 2.850 3.818 8.631 1.524 1.790 1.911 2.341 1944 chr12 52396574 52487841 + 0 NA intron (NM_001202234, intron 2 of 7) AluY|SINE|Alu -2979 NM_173157 3164 Hs.524430 NM_002135 ENSG00000123358 NR4A1 GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3 nuclear receptor subfamily 4 group A member 1 protein-coding nan 1.212 0.912 0.661 1.318 0.768 0.656 0.332 0.091 0.903 0.539 1.111 1.642 0.429 0.068 nan 3.569 1.452 1.839 2.464 nan 2.609 1.198 1.402 1.470 0.652 nan 1.894 nan 1.145 0.952 1.334 2.013 1.103 1.207 0.674 0.882 2.541 1.399 0.723 1.674 0.197 0.710 0.656 1.111 0.516 1.383 0.746 0.186 6109 chr4 187605103 187623738 + 0 NA intron (NM_005245, intron 2 of 26) intron (NM_005245, intron 2 of 26) 30567 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding nan 0.658 nan 0.804 0.167 0.095 0.159 0.085 0.069 0.186 0.134 3.945 1.373 0.105 0.077 0.235 0.382 1.075 3.123 0.643 0.763 0.060 0.032 0.229 0.207 0.079 0.122 1.092 1.107 0.294 0.184 0.140 0.274 0.100 0.117 0.038 0.123 0.082 0.096 0.003 0.024 0.020 0.085 0.159 3.945 0.016 0.570 0.053 0.039 3217 chr16 88868337 88879612 + 0 NA intron (NM_030928, intron 9 of 9) intron (NM_030928, intron 9 of 9) 3788 NM_030928 81620 Hs.122908 NM_030928 ENSG00000167513 CDT1 DUP|RIS2 chromatin licensing and DNA replication factor 1 protein-coding nan 2.048 3.747 4.044 4.428 2.352 4.573 0.830 0.301 1.052 0.610 4.273 5.311 3.187 0.118 2.787 3.058 2.231 3.350 2.956 2.659 3.399 1.468 4.963 4.521 1.373 1.897 3.382 5.045 3.816 4.673 1.565 2.614 2.255 2.123 2.819 3.335 2.282 1.190 1.705 2.243 0.607 1.215 4.573 4.273 0.830 2.721 1.075 1.138 6181 chr5 14137983 14178839 + 0 NA intron (NM_007118, intron 1 of 56) AluSc|SINE|Alu 14600 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding nan nan nan 2.499 0.893 0.456 1.416 2.564 0.473 0.824 0.573 1.135 nan 0.845 0.121 1.898 2.020 1.898 2.659 2.113 1.778 1.255 0.453 0.852 0.828 nan 3.748 3.224 5.445 3.957 4.368 2.026 3.780 1.356 1.785 1.044 nan 1.815 1.142 0.366 2.303 0.329 0.553 1.416 1.135 0.942 1.300 3.515 0.601 4923 chr20 31559122 31574634 + 0 NA Intergenic AluSz6|SINE|Alu 25361 NM_080675 140732 Hs.375186 NM_080675 ENSG00000167098 SUN5 SPAG4L|SPGF16|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 1.614 1.034 0.776 0.210 0.229 0.094 0.197 0.173 0.155 0.118 0.117 0.190 0.468 0.125 0.107 0.608 0.581 0.271 0.434 0.596 nan 0.450 0.226 0.345 0.321 0.773 1.145 0.303 0.430 6.882 5.378 0.348 0.371 0.135 0.186 2.168 nan 0.249 0.243 0.086 0.141 0.025 0.097 0.197 0.190 0.183 0.071 0.051 1.617 8267 chr9 126864412 126876430 + 0 NA Intergenic Intergenic 96532 NM_004789 9355 Hs.696425 NM_004789 ENSG00000106689 LHX2 LH2|hLhx2 LIM homeobox 2 protein-coding nan nan 0.590 1.295 0.326 0.160 0.169 0.087 0.013 0.166 0.090 0.479 nan 0.027 0.058 0.212 0.316 0.082 0.129 1.149 1.118 0.613 0.196 0.178 0.216 0.284 nan 7.294 5.342 1.143 0.800 0.151 0.212 0.158 0.205 0.269 0.291 nan 0.898 0.955 0.140 0.040 0.040 0.169 0.479 0.227 1.037 0.033 0.031 359 chr1 68176041 68191529 + 0 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 32925 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 2.121 1.214 nan 0.750 0.817 0.476 2.675 1.586 0.280 1.494 0.712 0.903 1.926 0.084 0.119 0.581 0.609 5.425 3.244 1.113 1.068 5.126 1.986 0.282 0.252 nan nan 2.830 nan 0.465 0.353 0.251 0.498 1.817 1.719 0.925 3.200 2.944 1.568 1.204 1.508 0.604 0.286 2.675 0.903 0.214 1.063 0.186 0.655 7502 chr7 137665627 137687922 + 0 NA intron (NM_194071, intron 1 of 11) intron (NM_194071, intron 1 of 11) 10073 NM_194071 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding nan nan nan 0.192 0.554 0.206 0.395 0.879 0.167 1.125 0.505 0.102 1.234 0.379 0.109 1.298 2.108 0.839 1.263 0.704 0.593 nan 1.300 2.674 2.595 1.251 nan 1.287 1.418 nan 1.776 0.415 0.626 1.412 0.959 0.669 1.437 1.872 nan 0.575 3.141 0.205 0.464 0.395 0.102 0.208 1.014 0.094 0.398 2608 chr14 57168918 57178373 + 0 NA Intergenic AluJb|SINE|Alu 98736 NM_172337 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding nan nan 2.022 0.139 0.645 0.357 0.407 0.109 0.116 0.099 0.490 0.385 0.057 0.141 0.236 0.261 14.753 4.594 0.425 0.551 0.836 0.325 0.681 0.918 0.174 0.240 0.369 0.418 0.972 0.461 0.251 0.525 0.173 0.301 1.651 3.645 nan 0.636 0.049 0.178 0.081 0.211 0.407 0.490 0.051 0.032 0.120 0.872 142 chr1 24642998 24652625 + 0 NA intron (NM_001195010, intron 1 of 15) intron (NM_001195010, intron 1 of 15) -1719 NM_021180 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 1.007 1.528 nan 0.955 0.747 0.267 1.118 1.674 0.118 0.036 0.087 0.462 2.495 0.045 0.104 0.439 0.491 2.330 9.400 1.215 1.239 0.729 0.140 0.705 0.860 0.215 0.429 2.702 3.136 0.308 0.230 0.606 0.704 0.451 0.407 0.299 0.456 0.372 0.395 0.924 0.939 0.040 0.116 1.118 0.462 0.151 0.206 0.064 5288 chr22 43187218 43197041 + 0 NA TTS (NM_014570) TTS (NM_014570) 61279 NM_001142293 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 1.154 nan 0.976 0.836 0.420 0.192 0.679 0.191 0.180 0.188 0.135 0.305 0.361 0.103 0.104 0.726 0.802 0.244 0.420 0.671 0.682 1.442 0.631 0.311 0.197 0.639 nan 2.976 2.788 nan 1.386 0.287 0.208 0.679 0.782 0.460 0.820 1.245 0.546 0.088 0.196 0.137 0.173 0.679 0.305 2.705 2.622 0.061 0.189 2712 chr14 81420784 81443808 + 0 NA intron (NM_001018036, intron 1 of 8) intron (NM_001018036, intron 1 of 8) 10427 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding nan 0.774 1.638 0.142 1.224 0.655 0.290 2.037 0.293 0.265 0.243 0.140 0.675 0.099 0.113 0.293 0.337 0.240 0.376 1.266 1.220 0.191 0.071 0.586 0.572 0.887 1.457 0.440 0.479 2.822 2.349 0.156 0.259 4.374 6.239 0.715 1.473 2.182 1.336 0.387 0.298 1.824 0.180 0.290 0.140 1.276 0.096 0.047 0.257 7759 chr8 77577389 77622684 + 0 NA intron (NM_024721, intron 1 of 10) intron (NM_024721, intron 1 of 10) -4526 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 1.269 0.657 0.976 0.276 0.322 0.198 1.059 1.959 0.234 0.352 0.208 0.064 0.311 3.839 0.120 1.172 0.945 4.511 4.778 1.764 1.706 0.605 0.187 5.730 5.817 1.033 1.343 0.377 0.437 1.122 0.819 0.609 1.718 3.709 3.529 0.365 0.711 1.033 0.660 0.169 1.604 0.901 0.032 1.059 0.064 0.011 0.549 0.420 0.131 5223 chr22 27035565 27070213 + 0 NA promoter-TSS (NR_003491) promoter-TSS (NR_003491) -557 NR_033319 440823 Hs.517502 NR_003491 ENSG00000225783 MIAT C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2|lncRNA-MIAT myocardial infarction associated transcript (non-protein coding) ncRNA nan 1.613 0.741 3.520 3.850 1.972 3.633 0.512 0.059 1.895 0.989 6.502 5.070 0.429 0.060 1.622 2.048 0.893 nan 7.745 7.779 5.814 1.796 1.932 2.112 1.014 nan 3.608 4.863 2.317 2.050 0.862 1.420 2.662 3.042 0.701 nan 4.808 2.480 1.173 1.770 1.074 2.080 3.633 6.502 0.706 1.977 1.353 0.222 2876 chr15 51315104 51318584 + 0 NA Intergenic MIRb|SINE|MIR 70058 NM_001311175 388121 Hs.306343 NM_207381 ENSG00000183578 TNFAIP8L3 TIPE3 TNF alpha induced protein 8 like 3 protein-coding 1.381 0.897 2.754 0.172 0.257 0.181 0.154 0.862 0.460 0.044 0.153 0.104 0.565 0.063 0.078 0.346 0.200 0.292 0.238 0.250 0.226 0.196 0.072 0.090 0.246 7.396 8.358 0.153 0.245 4.293 5.990 0.068 0.114 0.192 0.277 0.216 0.397 1.102 1.171 0.080 0.025 0.054 0.046 0.154 0.104 3.621 0.555 0.058 0.143 3428 chr17 43970903 43986777 + 0 NA intron (NM_001123066, intron 1 of 14) intron (NM_001123066, intron 1 of 14) 5691 NR_024560 100130148 Hs.669307 NR_024560 ENSG00000279685 MAPT-IT1 - MAPT intronic transcript 1 ncRNA 1.939 1.611 nan 3.037 7.885 4.214 1.913 0.168 0.050 2.912 1.198 2.073 2.156 0.808 0.113 1.573 1.620 0.285 0.401 7.360 nan 4.775 1.423 0.991 1.066 2.488 3.155 1.596 nan 4.672 3.999 1.180 1.798 4.301 3.452 0.737 1.453 3.717 1.845 2.383 0.510 1.069 2.613 1.913 2.073 1.318 1.128 0.514 0.131 6490 chr5 145704900 145726003 + 0 NA Intergenic Intergenic -3136 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding nan 0.731 0.459 0.116 0.267 0.152 0.116 0.074 0.145 0.089 0.078 0.103 0.810 0.052 0.097 0.186 0.137 0.117 0.112 0.407 0.414 0.334 0.078 0.064 0.070 0.185 0.317 0.219 0.304 0.416 0.262 0.177 0.220 1.160 0.547 0.118 0.190 0.718 0.525 0.039 0.047 0.082 6.483 0.116 0.103 0.069 0.044 0.056 0.053 532 chr1 150597909 150603414 + 0 NA intron (NM_207168, intron 1 of 1) intron (NM_207168, intron 1 of 1) 948 NM_207045 2029 Hs.632456 NM_004436 ENSG00000143420 ENSA ARPP-19e endosulfine alpha protein-coding nan nan 3.985 2.724 2.855 1.562 3.698 2.274 0.546 4.488 1.794 4.785 12.793 2.561 0.197 5.343 4.819 9.257 13.145 7.472 nan 6.674 5.669 12.407 13.608 3.937 4.613 3.910 6.265 4.259 2.948 8.324 9.973 4.526 5.330 4.986 5.699 2.839 1.476 2.137 5.984 0.759 1.438 3.698 4.785 0.634 2.538 3.938 1.406 55 chr1 8012923 8028532 + 0 NA promoter-TSS (NM_001123377) promoter-TSS (NM_001123377) -987 NM_007262 11315 Hs.419640 NM_007262 ENSG00000116288 PARK7 DJ-1|DJ1|HEL-S-67p Parkinsonism associated deglycase protein-coding 2.079 nan 2.267 4.053 1.252 0.715 0.599 1.574 0.137 0.679 0.486 0.705 3.621 1.384 0.116 1.502 1.802 1.170 1.929 4.830 4.698 1.709 0.808 3.151 3.284 2.672 nan nan 8.671 nan 1.513 1.244 1.815 1.019 1.065 1.918 2.821 2.242 1.338 0.873 0.933 0.225 0.470 0.599 0.705 0.550 0.850 0.784 0.886 5965 chr4 89909863 89945435 + 0 NA intron (NM_014883, intron 3 of 23) LTR1B|LTR|ERV1 50697 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 0.896 1.330 0.941 1.238 1.551 0.839 0.144 0.231 0.104 0.502 0.300 1.174 1.161 0.012 0.068 0.272 0.244 0.711 0.558 0.739 0.835 1.122 1.111 0.264 0.272 0.949 nan 1.773 1.821 0.464 0.281 0.241 0.232 0.865 1.389 1.301 nan 1.517 0.727 2.197 1.439 0.222 0.134 0.144 1.174 0.033 0.348 0.070 1.572 1718 chr11 126172748 126189822 + 0 NA intron (NM_014026, intron 2 of 5) L2b|LINE|L2 7638 NM_014026 28960 Hs.504249 NM_014026 ENSG00000110063 DCPS ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015 decapping enzyme, scavenger protein-coding 1.311 1.331 0.908 1.088 1.020 0.706 1.146 0.396 0.066 0.701 0.486 1.193 2.987 1.066 0.130 3.696 4.506 5.598 5.220 1.796 1.997 1.867 0.774 1.581 1.584 2.284 2.814 2.002 2.335 1.794 1.784 2.451 3.538 1.083 1.222 0.845 nan 1.359 0.872 2.135 0.605 0.273 0.595 1.146 1.193 0.256 0.451 1.362 0.687 2665 chr14 70136003 70188055 + 0 NA intron (NM_014734, intron 2 of 5) intron (NM_014734, intron 2 of 5) -71775 NM_006925 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 2.656 2.480 3.839 2.376 1.696 0.865 1.716 0.504 0.130 1.239 0.838 1.672 2.195 0.113 0.120 0.537 0.887 0.436 0.649 3.113 3.111 3.988 1.051 0.591 0.628 2.012 2.574 4.551 nan 4.695 4.346 0.663 1.277 3.493 3.848 1.248 3.836 2.667 nan 6.894 2.837 1.322 1.564 1.716 1.672 0.248 0.304 0.842 1.773 4609 chr2 176970389 177006199 + 0 NA exon (NM_014213, exon 1 of 2) exon (NM_014213, exon 1 of 2) 881 NM_014213 3235 Hs.236646 NM_014213 ENSG00000128709 HOXD9 HOX4|HOX4C|Hox-4.3|Hox-5.2 homeobox D9 protein-coding 2.179 2.241 1.533 2.427 3.779 1.988 1.152 0.335 0.108 1.489 0.949 8.434 5.409 0.935 0.089 0.738 1.088 1.990 2.481 6.248 5.801 2.254 0.908 0.836 0.892 1.038 1.475 3.142 3.732 1.523 1.696 2.759 4.952 1.686 1.477 0.444 0.948 1.798 0.929 6.000 0.973 0.552 0.294 1.152 8.434 0.198 2.434 2.182 0.104 3940 chr19 3356113 3372554 + 0 NA intron (NM_205843, intron 1 of 10) MIR|SINE|MIR -2232 NM_005597 4782 Hs.170131 NM_005597 ENSG00000141905 NFIC CTF|CTF5|NF-I|NFI nuclear factor I C protein-coding 1.742 2.042 3.392 1.529 2.273 1.295 1.729 2.191 0.341 1.303 0.615 2.976 3.129 3.763 0.110 1.423 2.298 1.483 1.546 4.096 3.545 1.213 0.435 2.992 2.880 5.555 7.661 2.226 nan 5.557 5.753 0.952 1.525 1.694 1.434 0.655 0.964 1.446 0.912 1.793 1.569 0.603 0.180 1.729 2.976 0.751 1.831 0.766 0.420 440 chr1 109395735 109409820 + 0 NA Intergenic Intergenic -1913 NR_049760 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 1.720 nan nan 0.069 0.200 0.171 0.227 0.233 0.125 0.056 0.087 1.245 0.320 0.046 0.110 0.312 0.317 0.194 0.213 0.675 nan 0.457 0.215 0.326 0.338 1.425 1.920 nan nan 1.021 0.485 0.205 0.268 0.106 0.094 1.509 nan 0.320 0.365 0.039 0.120 0.013 4.017 0.227 1.245 0.318 0.073 0.183 2.718 1898 chr12 31252322 31274294 + 0 NA Intergenic Intergenic -36527 NR_038927 100506660 Hs.586774 NR_038927 ENSG00000245614 DDX11-AS1 CONCR DDX11 antisense RNA 1 ncRNA 1.895 nan 1.994 4.041 0.835 0.328 0.877 0.168 0.052 1.671 0.663 3.414 2.442 0.133 0.108 0.511 0.757 1.054 1.555 8.430 7.069 2.746 0.968 2.064 2.196 0.316 0.432 4.753 5.000 2.828 3.217 0.729 1.259 7.686 5.866 0.588 1.145 3.279 1.725 3.396 3.181 2.852 1.232 0.877 3.414 0.411 2.366 0.495 0.485 8258 chr9 123677507 123699888 + 0 NA intron (NM_001190945, intron 2 of 8) intron (NM_001190945, intron 2 of 8) 476 NM_005658 7185 Hs.531251 NM_005658 ENSG00000056558 TRAF1 EBI6|MGC:10353 TNF receptor associated factor 1 protein-coding nan nan 1.335 0.743 0.722 0.393 0.297 0.798 0.130 0.375 0.203 0.616 nan 0.388 0.082 0.360 0.571 0.346 0.762 1.055 1.368 0.720 0.283 0.644 0.742 1.127 nan 1.334 1.514 1.441 1.230 0.362 0.518 0.594 0.524 1.778 5.741 nan 0.799 1.005 0.244 0.103 0.138 0.297 0.616 0.249 0.880 0.071 2.301 8001 chr8 145548947 145562876 + 0 NA 3' UTR (NM_031309, exon 2 of 2) 3' UTR (NM_031309, exon 2 of 2) 4032 NM_031309 83482 Hs.31746 NM_031309 ENSG00000261678 SCRT1 SCRT|ZNF898 scratch family transcriptional repressor 1 protein-coding 3.188 1.509 nan 2.491 2.111 1.251 1.784 0.362 0.116 0.394 0.191 2.558 7.498 0.870 0.047 1.757 3.001 0.876 1.281 nan 4.283 nan 0.893 1.351 1.262 1.268 1.883 1.062 1.930 2.778 2.851 1.568 3.079 1.309 1.070 1.915 2.622 0.832 0.490 2.972 3.283 0.240 0.763 1.784 2.558 0.871 2.203 1.132 0.831 6851 chr6 76309934 76313973 + 0 NA 5' UTR (NM_001304792, exon 1 of 15) 5' UTR (NM_001304792, exon 1 of 15) 728 NM_001100409 26054 Hs.485784 NM_015571 ENSG00000112701 SENP6 SSP1|SUSP1 SUMO1/sentrin specific peptidase 6 protein-coding 8.247 nan 6.000 8.310 6.968 4.082 9.801 5.016 0.479 2.875 1.501 12.119 10.388 7.237 0.189 12.970 13.777 10.667 14.101 14.590 17.216 11.828 8.771 23.402 24.604 4.823 5.800 8.168 13.387 15.545 15.238 10.429 18.649 9.206 8.671 10.905 8.334 3.087 1.911 5.843 5.419 1.793 6.397 9.801 12.119 2.238 3.570 4.350 3.286 7209 chr7 26104004 26145661 + 0 NA Intergenic AluSx|SINE|Alu -67015 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 1.564 1.059 1.495 0.141 0.335 0.185 0.852 0.104 0.127 0.136 0.143 0.132 0.450 0.104 0.159 0.624 0.490 0.245 nan 0.432 0.566 1.131 0.352 0.432 0.481 0.646 0.962 0.475 0.546 1.295 1.025 0.230 0.288 0.151 0.197 1.149 nan 0.394 0.401 0.164 0.158 0.039 0.130 0.852 0.132 0.102 0.042 0.055 1.305 5934 chr4 74122269 74126497 + 0 NA exon (NM_015574, exon 1 of 34) exon (NM_015574, exon 1 of 34) 132 NM_198889 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 6.080 3.036 3.951 7.525 6.041 3.027 4.543 3.835 0.380 1.579 0.923 5.930 8.481 4.239 0.151 8.282 9.449 9.202 12.403 8.688 7.177 10.031 5.468 23.944 24.379 3.968 4.951 13.530 19.641 11.642 13.120 3.126 6.260 4.557 5.266 7.640 6.568 2.958 1.588 2.910 6.317 0.945 3.734 4.543 5.930 0.900 3.968 1.243 1.896 5961 chr4 83347831 83354387 + 0 NA promoter-TSS (NM_001292017) promoter-TSS (NM_001292017) 269 NM_031372 9987 Hs.527105 NM_005463 ENSG00000152795 HNRNPDL HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|laAUF1 heterogeneous nuclear ribonucleoprotein D like protein-coding 5.321 2.498 3.740 4.718 7.648 4.140 5.723 2.601 0.440 2.540 0.915 7.466 8.722 3.985 0.125 7.359 6.353 8.439 10.681 10.648 8.686 10.294 5.552 15.196 15.494 2.901 nan 10.444 15.315 8.796 11.028 3.036 5.951 6.190 5.402 7.684 nan 2.475 1.547 4.701 7.005 1.151 3.774 5.723 7.466 0.993 3.328 1.143 1.916 7875 chr8 110141765 110149386 + 0 NA Intergenic Intergenic 45922 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding nan nan 1.114 0.239 0.344 0.105 0.297 0.152 0.064 0.041 0.140 0.063 0.576 0.015 0.114 0.679 0.279 1.720 0.781 0.650 0.492 nan 0.452 19.097 nan 3.798 5.594 0.986 1.006 0.458 0.186 0.272 0.437 0.175 0.145 0.171 0.367 0.493 0.497 0.036 0.326 0.037 0.092 0.297 0.063 0.053 0.219 0.049 711 chr1 183482299 183489901 + 0 NA intron (NM_001331007, intron 4 of 23) intron (NM_001331007, intron 4 of 23) 44594 NM_173156 9887 Hs.591463 NM_014837 ENSG00000116698 SMG7 C1orf16|EST1C|SGA56M SMG7, nonsense mediated mRNA decay factor protein-coding nan nan 1.218 0.103 0.508 0.359 0.294 0.400 0.275 0.535 0.342 0.206 0.372 0.115 0.117 0.507 0.604 3.580 2.548 0.492 nan 1.080 0.340 nan 0.661 0.794 1.214 0.648 0.417 0.405 0.217 1.963 3.491 3.645 7.633 0.433 nan 0.779 0.623 0.066 0.129 1.226 0.084 0.294 0.206 0.254 4.561 0.081 4081 chr19 42615300 42621544 + 0 NA intron (NM_001207025, intron 5 of 13) intron (NM_001207025, intron 5 of 13) 18203 NM_001207025 5452 Hs.147381 NM_002698 ENSG00000028277 POU2F2 OCT2|OTF2|Oct-2 POU class 2 homeobox 2 protein-coding 1.831 0.781 1.710 0.183 2.682 1.413 0.369 0.189 0.052 0.101 0.077 1.437 1.067 0.017 0.130 2.200 2.744 0.257 0.184 2.445 2.419 3.344 0.796 0.216 0.237 0.405 0.767 3.263 3.191 2.441 2.133 2.006 2.835 0.415 0.295 2.016 6.303 1.735 1.001 3.219 8.462 0.045 0.889 0.369 1.437 0.232 0.205 1.634 2.403 998 chr10 3844395 3856968 + 0 NA Intergenic Intergenic -23208 NM_001160124 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 0.528 3.044 0.778 1.389 4.337 2.269 1.519 3.437 0.420 2.230 0.529 1.664 2.641 8.750 0.228 0.453 0.534 1.145 3.043 0.590 0.586 9.678 5.751 0.138 0.171 0.274 0.454 2.934 3.592 0.188 0.066 0.183 0.283 0.943 1.885 0.265 0.438 3.238 1.822 0.022 0.579 0.105 0.088 1.519 1.664 0.023 0.622 0.058 0.040 6792 chr6 46290004 46296955 + 0 NA 5' UTR (NM_005822, exon 1 of 4) 5' UTR (NM_005822, exon 1 of 4) 150 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 1.404 2.820 0.719 0.400 1.194 0.713 1.989 0.236 0.089 0.658 0.427 0.103 3.190 0.031 0.145 0.741 0.444 0.341 0.591 0.773 0.655 0.215 0.131 0.315 0.388 0.133 0.298 1.187 nan 0.420 0.197 0.364 0.392 7.988 8.208 0.117 0.258 1.511 0.821 0.251 0.256 2.580 0.172 1.989 0.103 0.126 0.118 0.129 0.096 6733 chr6 35435057 35476736 + 0 NA intron (NM_003214, intron 1 of 12) intron (NM_003214, intron 1 of 12) 8965 NM_003214 7005 Hs.485205 NM_003214 ENSG00000007866 TEAD3 DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5 TEA domain transcription factor 3 protein-coding nan 1.554 nan 1.421 0.764 0.388 1.494 0.898 0.262 0.282 0.168 2.490 1.699 0.816 0.104 2.152 2.723 1.583 nan nan 1.381 1.546 0.755 2.649 2.788 1.217 1.790 5.146 6.315 2.101 2.078 1.694 2.771 0.636 0.538 2.329 3.258 0.678 0.558 1.412 0.395 0.110 0.361 1.494 2.490 0.699 0.586 1.269 1.559 1773 chr12 3592924 3607047 + 0 NA promoter-TSS (NM_019854) promoter-TSS (NM_019854) -379 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 1.101 nan nan 1.110 0.509 0.295 1.069 0.116 0.069 0.188 0.159 0.383 8.630 0.027 0.074 0.183 0.205 0.049 0.108 nan 0.769 2.560 0.523 0.068 0.140 0.369 0.492 1.088 1.160 0.758 0.650 0.438 0.647 0.852 0.820 0.373 nan 0.861 0.571 0.458 1.004 0.080 1.833 1.069 0.383 0.371 0.552 0.231 0.071 3166 chr16 70716981 70761118 + 0 NA intron (NM_018052, intron 14 of 18) intron (NM_018052, intron 14 of 18) -19095 NM_138383 92154 Hs.432387 NM_138383 ENSG00000132613 MTSS1L ABBA|ABBA-1|ABBA1 MTSS1L, I-BAR domain containing protein-coding 2.490 0.742 nan 1.029 0.428 0.240 2.114 1.470 0.252 0.481 0.226 0.407 0.706 0.128 0.074 0.522 0.974 0.425 0.750 1.106 1.054 0.710 0.249 1.141 1.176 0.846 1.355 2.073 2.758 1.216 1.692 0.387 0.609 0.853 0.754 0.601 0.861 1.854 1.057 2.138 0.623 0.131 0.247 2.114 0.407 0.756 3.449 0.150 0.240 3392 chr17 37924368 37959165 + 0 NA intron (NM_001284515, intron 5 of 7) intron (NM_001284515, intron 5 of 7) -7288 NM_001284516 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding nan 1.167 0.627 0.156 1.504 0.744 0.505 0.095 0.118 0.226 0.239 1.025 1.246 0.031 0.085 0.522 0.657 0.240 0.577 nan 0.886 0.374 0.178 0.673 0.710 0.193 0.341 1.541 1.170 nan 0.170 0.429 0.624 0.458 0.590 0.322 0.513 1.034 0.779 3.151 0.841 0.090 0.391 0.505 1.025 0.111 0.023 0.189 0.177 6450 chr5 133249934 133263447 + 0 NA Intergenic L1MC4|LINE|L1 7322 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 1.290 1.057 nan 0.248 0.340 0.206 0.313 0.105 0.096 0.220 0.208 0.266 1.076 0.062 0.114 0.419 0.477 0.266 0.374 2.940 2.695 2.616 0.694 0.461 0.487 1.238 1.648 2.280 1.774 0.955 1.290 0.170 0.224 4.604 3.768 0.250 0.474 0.884 0.465 0.568 0.065 2.311 1.039 0.313 0.266 0.289 0.313 0.083 0.154 6741 chr6 36627402 36652921 + 0 NA Intergenic LTR16A|LTR|ERVL 2742 NR_109836 101154753 Hs.741557 NR_109836 ENSG00000281450 PANDAR PANDA promoter of CDKN1A antisense DNA damage activated RNA ncRNA nan 3.583 nan 1.370 1.361 0.703 2.751 2.095 0.240 1.485 0.608 1.724 9.528 0.320 0.128 0.565 0.794 1.111 nan nan 1.869 4.415 1.254 0.744 0.664 2.840 3.948 5.979 7.768 1.831 1.736 1.870 2.733 6.187 5.817 0.295 0.430 2.777 1.477 4.864 2.983 1.854 0.766 2.751 1.724 0.706 1.463 2.012 0.053 3974 chr19 13075481 13088920 + 0 NA intron (NM_152654, intron 1 of 1) AluSx|SINE|Alu 1768 NM_152654 199699 Hs.331981 NM_152654 ENSG00000179284 DAND5 CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1 DAN domain BMP antagonist family member 5 protein-coding 2.361 0.957 8.372 0.486 1.085 0.429 0.540 0.722 0.622 0.398 0.215 1.000 0.692 0.630 0.108 0.627 1.292 1.061 1.534 2.224 2.062 2.049 0.638 0.523 0.633 3.524 3.868 1.151 1.532 5.260 5.385 0.449 0.554 1.763 1.955 1.120 2.212 2.861 1.349 1.214 0.362 0.478 0.271 0.540 1.000 0.941 0.574 0.060 1.406 3918 chr18 77152333 77166742 + 0 NA promoter-TSS (NM_001278675) promoter-TSS (NM_001278675) -737 NM_001278672 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T-cells 1 protein-coding nan nan 0.728 0.116 1.916 1.035 1.953 0.037 0.033 0.556 0.229 2.039 3.605 0.526 0.046 5.390 7.115 7.088 8.588 2.853 nan 4.482 3.210 1.215 1.273 0.145 0.148 0.265 nan 0.349 0.224 2.385 4.259 0.545 0.696 0.103 0.111 0.310 0.343 2.064 0.062 0.046 0.850 1.953 2.039 0.180 0.141 2.242 0.017 5270 chr22 39317935 39324834 + 0 NA Intergenic Charlie25|DNA|hAT-Charlie -32143 NM_145699 200315 Hs.226307 NM_145699 ENSG00000128383 APOBEC3A A3A|ARP3|PHRBN|bK150C2.1 apolipoprotein B mRNA editing enzyme catalytic subunit 3A protein-coding 1.615 nan 1.068 1.197 3.134 1.255 2.599 0.240 0.255 0.385 0.213 6.164 3.964 0.567 0.187 0.313 0.630 1.646 3.813 4.098 4.638 3.930 3.600 0.114 0.126 1.189 nan 3.267 5.765 nan 1.905 0.392 0.694 5.200 5.891 0.465 1.745 1.379 0.557 2.118 3.308 1.862 0.103 2.599 6.164 0.490 0.771 0.403 0.129 2351 chr13 77899162 77905305 + 0 NA Intergenic Intergenic -1056 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|Phr MYC binding protein 2, E3 ubiquitin protein ligase protein-coding nan 2.475 4.535 3.887 5.256 2.949 4.939 2.443 0.183 1.416 0.696 3.662 11.471 1.657 0.129 6.643 10.030 3.438 4.492 7.034 4.961 6.880 1.893 3.693 3.628 1.565 2.015 4.148 4.632 nan 7.392 5.430 10.830 1.869 1.164 5.100 6.387 0.820 0.554 1.747 6.223 0.464 4.727 4.939 3.662 1.668 1.386 5.538 1.819 4229 chr2 16023140 16038093 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie -29905 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript (non-protein coding) ncRNA 0.625 0.529 0.875 0.298 0.146 0.107 0.086 0.076 0.065 0.084 0.105 0.072 0.487 0.044 0.117 0.405 0.510 0.447 1.751 0.280 0.327 0.152 0.092 0.158 0.201 0.179 0.291 0.267 nan 0.646 0.610 23.261 31.859 0.023 0.060 0.462 nan 0.146 0.236 0.072 0.149 0.013 0.027 0.086 0.072 0.078 0.055 18.912 0.057 2125 chr12 106518735 106535805 + 0 NA intron (NM_014840, intron 1 of 6) intron (NM_014840, intron 1 of 6) 6541 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 2.590 1.866 nan 3.292 3.078 1.542 2.095 2.758 0.356 1.286 0.823 5.501 3.297 2.616 0.167 0.455 0.326 1.296 2.317 6.487 6.915 1.220 0.375 2.992 3.086 0.887 1.515 3.031 4.023 2.114 2.019 0.775 1.315 1.971 1.764 0.876 1.078 1.318 1.004 5.131 1.674 1.040 1.457 2.095 5.501 0.628 1.197 0.272 1.037 973 chr1 245965591 245978002 + 0 NA intron (NM_001167740, intron 10 of 11) intron (NM_001167740, intron 10 of 11) 608918 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding nan 3.278 nan 0.613 2.409 1.156 0.628 0.239 0.207 0.603 0.477 0.868 2.235 0.069 0.107 1.759 2.128 3.027 2.113 0.996 1.009 7.855 1.962 2.243 2.188 0.513 0.820 2.125 3.127 1.926 2.225 1.821 2.638 0.432 0.399 0.613 1.290 0.735 0.738 1.580 1.960 0.046 0.123 0.628 0.868 0.650 0.115 4.111 0.460 4021 chr19 33781376 33794821 + 0 NA Intergenic AluJr4|SINE|Alu 5372 NM_001287424 1050 Hs.76171 NM_004364 ENSG00000245848 CEBPA C/EBP-alpha|CEBP CCAAT/enhancer binding protein alpha protein-coding 0.800 1.192 0.904 0.510 0.374 0.198 0.228 0.122 0.071 0.110 0.080 0.135 9.086 0.927 0.098 1.085 1.424 4.140 5.632 0.431 0.370 0.776 0.124 0.430 0.401 0.323 0.801 0.148 0.224 nan 0.929 1.973 2.541 0.214 0.338 0.258 0.297 0.369 0.422 0.730 0.456 0.022 0.053 0.228 0.135 0.353 0.279 1.138 0.074 7987 chr8 143680445 143705763 + 0 NA 3' UTR (NM_015193, exon 3 of 3) 3' UTR (NM_015193, exon 3 of 3) 2729 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1 activity regulated cytoskeleton associated protein protein-coding 2.373 1.005 nan 0.152 1.421 0.827 1.780 0.081 0.082 0.254 0.193 0.491 2.226 0.072 0.043 0.834 1.288 0.095 0.205 nan 2.616 nan 0.163 0.262 0.215 0.410 0.746 0.730 0.982 1.561 1.787 0.558 0.677 0.607 0.411 0.432 0.686 1.702 0.937 1.420 0.901 0.079 0.047 1.780 0.491 0.928 1.257 0.214 0.064 7129 chr7 2135028 2242264 + 0 NA intron (NM_001013836, intron 11 of 18) intron (NM_001013836, intron 11 of 18) 83937 NM_003550 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 MAD1 mitotic arrest deficient like 1 protein-coding 1.260 1.010 1.915 0.837 0.414 0.208 0.746 0.686 0.126 0.280 0.212 1.576 nan 0.186 0.140 0.982 1.487 0.359 nan 3.133 3.198 nan 0.305 0.882 0.890 0.451 0.788 nan 5.915 0.385 0.348 0.597 0.819 0.818 1.058 0.509 1.055 0.427 0.352 1.838 0.449 0.167 0.411 0.746 1.576 0.143 0.634 0.437 0.328 6624 chr6 15242374 15250271 + 0 NA 5' UTR (NM_004973, exon 1 of 18) 5' UTR (NM_004973, exon 1 of 18) 116 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 5.048 nan 4.090 4.027 2.411 1.420 3.348 1.812 0.468 1.277 0.623 5.170 2.878 2.923 0.190 2.200 4.052 10.610 10.197 5.449 4.439 4.338 1.493 5.918 5.479 2.817 3.606 3.704 5.126 8.520 11.446 2.014 4.739 3.752 3.158 3.632 6.076 1.566 0.947 1.179 4.463 0.955 2.571 3.348 5.170 1.454 1.662 2.104 2.644 6449 chr5 133177678 133194011 + 0 NA Intergenic L1MC3|LINE|L1 -63524 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 1.471 1.301 nan 0.075 0.192 0.079 0.126 0.065 0.099 0.096 0.113 0.156 0.348 0.053 0.114 0.245 0.128 0.147 0.285 0.604 0.839 0.295 0.148 0.308 0.323 0.276 0.592 1.258 0.995 0.857 0.700 0.140 0.118 1.452 0.980 1.885 5.432 0.738 0.567 0.147 0.673 0.627 0.135 0.126 0.156 0.411 0.145 0.012 2.678 8062 chr9 14298110 14331639 + 0 NA promoter-TSS (NM_005596) promoter-TSS (NM_005596) -829 NM_001190737 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 5.901 4.464 1.973 1.076 2.518 2.117 0.234 3.687 2.383 3.727 14.785 1.943 0.092 0.750 0.672 3.838 6.703 5.985 4.854 5.147 1.999 1.291 1.337 40.415 42.092 3.055 4.316 0.840 0.840 0.718 1.423 5.639 4.232 3.465 3.817 5.041 2.623 6.944 0.900 1.247 0.931 2.518 3.727 0.396 1.384 0.260 0.755 406 chr1 94078208 94084429 + 0 NA intron (NM_001261408, intron 5 of 13) intron (NM_001261408, intron 5 of 13) -1616 NM_001261410 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding nan nan 2.051 0.920 5.453 2.385 2.927 8.935 0.349 1.384 0.450 1.106 2.331 0.245 0.118 4.357 6.339 6.375 6.211 2.036 nan 3.780 1.181 2.137 2.023 2.586 nan 4.821 4.749 nan 0.381 5.506 5.684 1.547 1.236 0.597 1.120 2.215 1.467 3.776 0.527 0.537 0.396 2.927 1.106 0.095 4.384 3.821 0.278 5948 chr4 80092887 80108299 + 0 NA intron (NR_038342, intron 3 of 5) intron (NR_038342, intron 3 of 5) 146578 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 1.346 0.652 2.024 0.172 0.291 0.249 0.358 0.110 0.104 0.142 0.167 0.148 0.509 0.027 0.120 0.832 0.924 0.396 0.301 0.359 0.511 1.057 0.295 0.379 0.335 1.761 nan 0.364 0.466 1.332 1.146 0.185 0.443 3.162 3.920 0.321 nan 0.520 0.313 0.014 0.098 1.341 0.784 0.358 0.148 0.212 0.079 0.160 0.231 3389 chr17 37718462 37736446 + 0 NA Intergenic L2c|LINE|L2 36721 NM_006160 4761 Hs.322431 NM_006160 ENSG00000171532 NEUROD2 NDRF|bHLHa1 neuronal differentiation 2 protein-coding nan 1.038 0.706 0.181 1.443 0.744 0.811 0.167 0.133 0.341 0.166 0.553 1.114 0.312 0.082 2.552 4.734 0.579 0.574 nan 1.201 0.863 0.417 0.839 0.945 1.255 2.135 1.364 2.804 nan 2.009 0.368 0.562 0.619 0.305 0.681 0.924 1.729 0.941 0.121 0.510 0.195 0.089 0.811 0.553 0.678 0.300 0.116 0.214 8420 chrX 153143169 153177203 + 0 NA Intergenic Intergenic -7799 NR_027419 554 Hs.567240 NM_000054 ENSG00000126895 AVPR2 ADHR|DI1|DIR|DIR3|NDI|V2R arginine vasopressin receptor 2 protein-coding 1.576 0.804 1.181 0.187 1.013 0.480 0.953 0.046 0.052 0.138 0.104 0.622 0.989 0.054 0.054 1.028 2.133 0.169 0.251 1.313 1.328 0.773 0.252 0.175 0.183 0.341 0.555 0.225 0.353 3.185 3.325 0.448 0.624 0.331 0.382 0.562 1.167 0.469 0.352 0.668 2.095 0.093 0.378 0.953 0.622 0.639 0.227 0.338 0.232 7169 chr7 14016132 14033062 + 0 NA intron (NM_004956, intron 5 of 13) intron (NM_004956, intron 5 of 13) 1542 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding nan 2.544 nan 1.370 1.984 1.115 1.272 3.869 0.106 5.463 2.938 0.964 5.971 0.841 0.168 nan 0.574 0.376 0.436 3.011 2.684 3.295 1.127 2.002 1.992 5.571 6.313 2.783 4.382 1.130 0.985 0.121 0.133 3.387 3.611 0.286 0.415 1.492 0.852 0.750 0.985 0.780 0.711 1.272 0.964 0.149 2.492 0.023 0.051 7992 chr8 144357984 144374838 + 0 NA Intergenic AluY|SINE|Alu -2541 NR_120683 100507316 Hs.446671 NR_120682 ENSG00000253716 MINCR LINC01604 MYC-induced long noncoding RNA ncRNA 2.485 1.484 nan 1.578 1.399 0.725 1.536 0.590 0.143 0.438 0.216 1.916 5.168 1.138 0.079 2.426 2.291 1.905 2.891 nan 2.992 nan 0.825 2.339 2.380 1.215 1.914 1.234 1.405 1.467 1.484 1.804 2.767 1.254 1.418 1.402 1.972 1.617 0.990 1.271 2.099 0.188 0.340 1.536 1.916 0.516 3.810 0.648 0.592 111 chr1 17885975 17933633 + 0 NA intron (NM_001319837, intron 1 of 25) intron (NM_001319837, intron 1 of 25) 2756 NM_001011722 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 1.176 0.799 nan 0.087 1.695 1.052 0.403 1.220 0.186 0.693 0.245 0.327 1.270 0.137 0.110 1.436 2.652 0.394 0.826 1.520 1.422 1.708 0.671 0.719 nan 0.507 nan 2.220 2.037 nan 0.613 0.977 1.508 0.416 0.384 0.424 1.245 0.759 0.626 1.001 1.989 0.096 0.179 0.403 0.327 0.491 0.880 1.263 0.143 559 chr1 154528866 154548036 + 0 NA Intergenic Intergenic -1806 NM_000748 1141 Hs.2306 NM_000748 ENSG00000160716 CHRNB2 EFNL3|nAChRB2 cholinergic receptor nicotinic beta 2 subunit protein-coding nan nan 2.051 1.250 1.547 0.812 2.147 0.750 0.126 1.248 0.719 1.407 6.014 0.903 0.117 2.815 2.939 1.703 2.078 3.525 nan 2.855 0.853 0.838 0.702 2.302 2.837 3.004 4.025 1.760 1.781 3.697 5.606 1.603 1.805 1.514 2.325 1.765 0.845 0.838 2.231 0.210 0.781 2.147 1.407 0.449 1.893 3.171 0.490 6579 chr6 1669351 1694988 + 0 NA intron (NM_001500, intron 9 of 10) AluJo|SINE|Alu 71488 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 1.009 0.957 1.463 0.846 0.565 0.366 0.329 1.044 0.164 0.365 0.178 0.319 0.219 0.063 0.114 0.473 0.342 2.062 4.421 0.521 0.485 0.330 0.177 0.455 0.427 0.675 1.062 0.513 0.805 0.470 0.332 0.207 0.301 0.223 0.245 0.258 0.383 1.056 0.597 0.055 0.106 0.018 0.136 0.329 0.319 0.170 0.435 0.078 0.077 31 chr1 2984263 3005056 + 0 NA intron (NM_199454, intron 1 of 16) intron (NM_199454, intron 1 of 16) 8917 NM_199454 63976 Hs.99500 NM_022114 ENSG00000142611 PRDM16 CMD1LL|KMT8F|LVNC8|MEL1|PFM13 PR/SET domain 16 protein-coding 0.714 nan 0.450 0.068 0.679 0.424 0.203 0.043 0.069 0.023 0.042 0.029 0.285 0.532 0.099 0.156 0.088 0.196 0.288 0.234 0.323 0.051 0.053 0.148 0.092 0.092 nan nan 0.112 nan 0.055 0.123 0.133 0.049 0.070 0.063 0.075 0.128 0.178 7.022 0.030 0.019 0.015 0.203 0.029 0.140 0.010 0.018 4160 chr19 59048406 59058200 + 0 NA promoter-TSS (NM_001316980) promoter-TSS (NM_001316980) -224 NM_001316980 84878 Hs.515662 NM_032792 ENSG00000119574 ZBTB45 ZNF499 zinc finger and BTB domain containing 45 protein-coding 2.904 1.770 2.444 2.447 5.194 2.620 2.992 0.930 0.330 0.980 0.471 4.277 4.119 1.897 0.115 4.586 6.196 2.197 3.127 5.095 4.723 7.689 3.496 2.502 2.684 1.771 2.571 2.571 4.195 4.230 3.969 2.545 3.860 3.533 3.005 3.585 4.120 2.623 1.389 1.933 2.426 0.743 1.988 2.992 4.277 1.152 0.858 1.220 1.466 7647 chr8 37698115 37708374 + 0 NA intron (NM_018310, intron 3 of 3) FRAM|SINE|Alu 4187 NM_018310 55290 Hs.709301 NM_018310 ENSG00000104221 BRF2 BRFU|TFIIIB50 BRF2, RNA polymerase III transcription initiation factor subunit protein-coding 1.707 2.406 nan 7.353 1.582 0.864 1.746 1.041 0.202 1.168 0.728 3.722 2.847 1.171 0.095 2.326 2.967 2.345 3.721 4.413 4.762 3.381 1.106 3.795 3.888 0.919 1.257 2.414 3.477 1.767 1.671 1.327 2.314 1.885 1.726 1.482 1.561 2.071 1.136 1.308 1.687 0.268 0.372 1.746 3.722 0.282 1.100 0.907 0.607 3336 chr17 27068963 27075042 + 0 NA intron (NM_004295, intron 1 of 6) intron (NM_004295, intron 1 of 6) 979 NM_004295 9618 Hs.8375 NM_004295 ENSG00000076604 TRAF4 CART1|MLN62|RNF83 TNF receptor associated factor 4 protein-coding nan nan 8.283 2.204 5.754 3.035 3.329 2.274 0.531 1.534 0.617 4.172 11.697 6.147 0.132 4.132 6.289 6.089 10.302 6.411 5.182 5.969 1.664 7.805 7.657 2.442 3.383 12.043 12.971 5.909 5.772 2.423 5.028 4.448 3.879 3.614 nan 2.429 1.421 5.547 4.630 1.201 1.977 3.329 4.172 1.880 3.051 3.147 2.827 968 chr1 245019029 245033092 + 0 NA intron (NM_004501, intron 1 of 13) intron (NM_004501, intron 1 of 13) 1767 NM_004501 3192 Hs.106212 NM_004501 ENSG00000153187 HNRNPU HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U heterogeneous nuclear ribonucleoprotein U protein-coding nan 5.290 nan 5.597 5.611 3.076 3.941 2.572 0.286 2.974 1.441 4.202 5.702 3.669 0.194 4.220 4.020 6.640 9.439 7.888 7.519 6.091 2.940 11.772 12.522 3.190 3.843 3.920 5.847 4.344 5.014 1.513 2.917 4.468 4.769 5.942 5.868 2.392 1.399 3.074 1.817 1.059 1.906 3.941 4.202 0.820 1.916 0.803 1.867 7300 chr7 57925778 57929435 + 0 NA Intergenic Intergenic 417723 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding nan 3.574 0.766 0.089 0.259 0.209 0.528 0.160 0.048 0.202 5.334 1.203 3.736 0.245 11.307 15.416 0.117 0.202 0.302 0.275 0.938 0.362 0.216 0.220 0.183 0.370 0.373 0.379 0.881 0.864 1.432 2.630 0.126 0.227 0.523 0.507 0.214 0.148 0.007 0.048 0.128 0.528 5.334 0.052 0.071 0.273 0.026 139 chr1 23849870 23859199 + 0 NA non-coding (NR_110799, exon 3 of 3) non-coding (NR_110799, exon 3 of 3) 3178 NM_004091 1870 Hs.194333 NM_004091 ENSG00000007968 E2F2 E2F-2 E2F transcription factor 2 protein-coding 4.742 2.867 nan 6.536 3.385 1.858 2.017 0.769 0.103 3.195 1.135 3.458 11.450 2.680 0.123 3.416 3.081 1.956 3.623 14.043 12.059 5.081 1.696 4.026 4.600 4.540 5.611 6.626 8.636 5.270 5.201 1.448 2.013 4.548 5.170 3.742 5.392 3.218 1.635 8.036 5.953 1.325 3.121 2.017 3.458 1.560 1.742 0.444 1.368 1518 chr11 73022688 73042339 + 0 NA intron (NM_014786, intron 1 of 20) MIRb|SINE|MIR 12850 NM_014786 9828 Hs.533719 NM_014786 ENSG00000110237 ARHGEF17 P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF Rho guanine nucleotide exchange factor 17 protein-coding nan 0.625 0.764 0.077 0.382 0.229 0.192 2.391 0.493 0.081 0.079 0.285 0.751 0.414 0.114 0.972 1.520 0.404 0.486 0.996 1.018 0.575 0.252 1.235 1.155 3.183 3.518 0.988 1.458 1.825 1.473 0.601 0.689 0.325 0.313 0.968 2.513 1.002 0.703 0.311 0.162 0.024 0.230 0.192 0.285 1.339 0.212 0.081 0.703 1460 chr11 64066466 64074481 + 0 NA intron (NR_133662, intron 8 of 10) AluSg|SINE|Alu -2527 NM_001282451 2101 Hs.110849 NM_004451 ENSG00000173153 ESRRA ERR1|ERRa|ERRalpha|ESRL1|NR3B1 estrogen related receptor alpha protein-coding nan 2.456 1.545 2.326 2.141 1.015 1.647 1.492 0.199 0.925 0.563 1.177 8.807 2.116 0.123 3.617 4.685 3.142 3.999 2.528 2.080 3.758 1.447 6.277 6.583 2.285 3.162 2.923 4.873 2.987 3.646 3.406 3.358 3.766 3.021 1.814 2.019 1.802 0.909 1.439 3.409 0.710 0.932 1.647 1.177 0.773 2.644 1.462 0.837 6996 chr6 138349648 138360460 + 0 NA Intergenic MIR|SINE|MIR 73606 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 PERP, TP53 apoptosis effector protein-coding 0.896 2.213 0.835 0.655 0.452 0.275 0.763 0.075 0.015 0.116 0.077 0.235 5.015 0.020 0.099 0.338 0.208 0.453 1.337 0.459 0.559 nan 0.487 0.321 0.323 0.078 0.220 0.695 0.592 0.625 0.200 0.161 0.269 4.733 6.927 0.415 nan 0.692 0.510 0.213 0.254 0.750 0.066 0.763 0.235 0.179 0.123 0.073 0.092 1267 chr11 690813 701229 + 0 NA promoter-TSS (NM_021008) promoter-TSS (NM_021008) -267 NM_001293634 10522 Hs.243994 NM_021008 ENSG00000177030 DEAF1 MRD24|NUDR|SPN|ZMYND5 DEAF1, transcription factor protein-coding 2.397 2.617 4.353 2.067 3.052 1.740 2.654 1.400 0.187 1.447 0.829 7.722 4.295 1.662 0.070 4.269 4.715 3.693 5.387 8.285 8.018 3.817 4.058 8.378 8.605 2.521 3.244 7.410 10.859 3.376 3.634 4.164 5.957 2.757 2.844 3.902 2.267 1.966 1.034 4.515 5.454 0.723 1.347 2.654 7.722 0.469 1.666 1.161 0.867 4015 chr19 31138839 31162605 + 0 NA Intergenic MSTA|LTR|ERVL-MaLR 287422 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 1.241 0.907 2.082 0.166 2.843 1.462 0.372 0.152 0.150 0.066 0.102 0.375 0.386 0.064 0.111 0.411 0.402 0.368 0.554 0.251 0.234 0.221 0.084 0.132 0.110 0.433 0.841 0.164 0.123 nan 0.105 0.794 0.740 0.037 0.082 0.514 1.808 0.582 0.461 3.194 0.146 0.020 0.066 0.372 0.375 0.313 0.047 0.126 0.270 6110 chr4 187642777 187649500 + 0 NA Intergenic CpG-20331 -1151 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding nan 0.794 nan 1.061 0.297 0.164 1.434 0.077 0.025 0.422 0.531 4.961 8.103 2.190 0.069 2.064 2.547 9.103 12.755 1.709 1.190 0.170 0.113 3.755 3.840 0.108 0.166 1.434 2.545 0.981 1.424 1.088 2.950 2.260 1.898 0.047 0.034 0.163 0.209 0.058 0.650 0.544 1.434 4.961 4.253 0.478 3843 chr18 55919885 55960433 + 0 NA intron (NM_001144964, intron 5 of 30) intron (NM_001144964, intron 5 of 30) 51405 NM_001144966 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding nan 0.900 0.930 0.146 0.261 0.158 0.360 0.300 0.051 0.070 0.077 0.238 0.558 0.045 0.072 0.495 0.502 1.376 5.361 0.614 0.658 0.760 0.383 0.687 0.692 0.353 0.564 0.956 1.170 0.521 0.369 0.379 0.529 0.213 0.356 0.357 0.754 nan 1.136 0.255 0.290 0.063 0.135 0.360 0.238 0.133 0.035 0.140 0.208 1258 chr10 131748576 131763732 + 0 NA intron (NM_001005463, intron 5 of 15) intron (NM_001005463, intron 5 of 15) 5937 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|O/E-2|OE-2 early B-cell factor 3 protein-coding 2.425 0.510 2.009 0.041 7.822 3.771 1.800 0.069 0.011 0.103 0.049 2.185 3.429 0.062 0.063 1.104 0.962 0.103 0.080 0.593 0.521 0.089 0.040 0.496 0.428 1.294 2.067 0.108 0.148 0.384 0.408 0.163 0.228 1.001 0.713 0.610 0.454 1.014 0.554 0.632 0.053 0.169 2.756 1.800 2.185 0.903 0.007 0.014 0.123 6998 chr6 138422493 138437889 + 0 NA Intergenic Intergenic -1531 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 PERP, TP53 apoptosis effector protein-coding 1.719 3.339 2.242 2.769 2.832 1.426 2.614 0.097 0.073 1.112 0.598 1.942 13.432 1.697 0.129 0.433 0.356 3.917 5.564 3.639 3.079 nan 2.879 2.980 2.991 0.177 0.299 2.722 3.856 1.305 1.444 1.554 3.218 7.492 7.886 0.541 nan 2.786 1.578 3.742 2.566 1.663 0.407 2.614 1.942 0.801 1.364 1.286 0.184 8064 chr9 14421654 14439791 + 0 NA Intergenic AluSz6|SINE|Alu -31740 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 1.052 0.295 0.387 0.228 1.113 0.535 0.044 0.730 0.594 0.566 2.234 0.070 0.074 0.249 0.304 2.949 6.184 0.826 0.925 1.237 0.382 0.128 0.166 31.837 36.362 0.384 0.401 0.483 0.215 0.290 0.600 0.697 0.663 0.638 2.768 2.443 1.517 1.121 0.108 0.090 0.048 1.113 0.566 0.082 0.335 0.109 0.705 3035 chr16 3193491 3246115 + 0 NA Intergenic AluSx|SINE|Alu 25511 NR_132322 197350 Hs.434132 NR_132322 ENSG00000228146 CASP16P CASP16 caspase 16, pseudogene pseudo 0.898 nan 0.893 0.681 0.612 0.354 0.264 0.220 0.110 0.236 0.183 0.227 2.421 0.545 0.090 0.375 0.393 0.237 0.372 0.485 0.449 nan 0.734 0.648 0.742 0.336 nan 0.537 0.613 1.362 1.265 0.282 0.404 0.899 0.821 0.488 1.158 0.699 0.427 0.235 0.558 0.113 0.089 0.264 0.227 0.192 0.377 0.111 0.196 6939 chr6 123639622 123681163 + 0 NA intron (NM_006073, intron 21 of 40) AluSx1|SINE|Alu -100357 NR_110844 101927990 Hs.660877 NR_110844 HRAT13 - heart tissue-associated transcript 13 ncRNA 0.751 0.839 0.819 0.261 0.288 0.223 0.163 0.093 0.074 0.197 0.167 0.386 0.340 0.044 0.110 0.380 0.239 0.226 0.225 0.485 0.673 2.983 1.169 0.253 0.261 0.382 0.491 0.749 0.554 0.387 0.191 0.128 0.288 0.217 0.157 0.206 0.336 3.219 1.841 0.047 0.144 0.028 0.059 0.163 0.386 0.007 0.049 0.110 0.062 5549 chr3 133156102 133173162 + 0 NA intron (NR_135277, intron 2 of 3) MER2|DNA|TcMar-Tigger 9988 NR_135278 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 0.938 nan nan 0.251 2.943 1.497 0.277 0.324 0.236 0.359 0.238 0.324 0.432 0.038 0.067 0.344 0.305 0.881 1.630 0.499 0.503 6.841 0.859 0.519 0.549 0.702 1.025 0.678 0.457 nan 0.318 0.153 0.308 0.791 1.338 0.280 0.583 1.436 0.657 0.214 0.177 0.084 0.167 0.277 0.324 0.131 0.317 0.040 0.053 7596 chr8 11653675 11666754 + 0 NA promoter-TSS (NM_001287745) promoter-TSS (NM_001287745) 94 NM_001287745 2222 Hs.593928 NM_004462 ENSG00000079459 FDFT1 DGPT|ERG9|SQS|SS farnesyl-diphosphate farnesyltransferase 1 protein-coding 1.693 1.959 nan 1.708 2.347 1.223 3.058 1.259 0.346 1.021 0.782 5.658 1.922 1.629 0.172 2.620 2.536 1.712 3.068 6.195 nan 3.414 2.286 5.492 5.502 1.786 2.418 2.056 3.705 3.228 2.700 1.254 2.846 1.789 1.536 2.510 4.171 2.928 1.390 3.064 2.789 0.723 0.556 3.058 5.658 0.461 1.393 1.489 2.034 6301 chr5 69203905 69211585 + 0 NA Intergenic Intergenic -113327 NM_021967 8293 Hs.726820 NM_021967 ENSG00000172058 SERF1A 4F5|FAM2A|H4F5|SERF1|SMAM1 small EDRK-rich factor 1A protein-coding 2.465 6.009 2.572 0.447 0.552 0.337 0.473 0.355 0.255 0.163 0.147 0.257 0.477 0.226 0.174 0.398 0.402 1.127 1.355 0.820 0.995 1.524 0.649 0.883 0.761 1.388 2.311 0.815 1.013 1.166 0.765 0.248 0.605 0.456 0.599 0.719 1.000 1.047 0.615 0.065 0.401 0.248 0.318 0.473 0.257 0.052 0.079 0.039 0.151 3608 chr17 79001875 79032298 + 0 NA intron (NM_017451, intron 1 of 14) intron (NM_017451, intron 1 of 14) 8139 NM_006340 10458 Hs.128316 NM_006340 ENSG00000175866 BAIAP2 BAP2|FLAF3|IRSP53 BAI1 associated protein 2 protein-coding 1.420 0.958 3.259 0.410 0.745 0.378 2.524 0.105 0.117 0.294 0.208 0.492 1.331 0.486 0.106 1.802 2.458 0.542 0.898 1.086 0.942 0.803 0.303 0.279 0.248 nan 1.266 0.866 1.281 2.029 2.159 0.921 1.348 0.540 0.563 1.107 1.889 nan 0.532 0.150 1.142 0.119 0.115 2.524 0.492 0.242 0.588 0.741 0.505 3264 chr17 7587022 7593658 + 0 NA promoter-TSS (NM_001143991) promoter-TSS (NM_001143991) -418 NM_001143991 55135 Hs.408312 NM_018081 ENSG00000141499 WRAP53 DKCB3|TCAB1|WDR79 WD repeat containing antisense to TP53 protein-coding 6.587 3.574 3.872 4.696 10.117 4.710 6.553 2.171 0.169 2.536 1.119 6.905 12.900 14.652 0.575 15.388 15.202 9.771 12.589 15.030 13.149 10.447 7.664 11.470 11.813 5.185 6.909 10.791 14.448 5.957 8.342 10.095 12.461 6.291 5.860 11.195 13.159 2.918 1.546 7.967 4.910 0.789 4.391 6.553 6.905 2.707 4.271 3.500 3.566 4127 chr19 49135658 49142453 + 0 NA exon (NM_001352, exon 2 of 4) exon (NM_001352, exon 2 of 4) 1752 NM_001352 1628 Hs.414480 NM_001352 ENSG00000105516 DBP DABP D-box binding PAR bZIP transcription factor protein-coding 3.810 3.796 4.220 3.762 12.648 6.536 3.988 3.505 0.772 2.187 0.973 4.449 8.748 6.344 0.174 4.178 5.675 3.766 6.452 5.687 5.294 5.701 2.505 9.787 10.515 5.355 5.926 6.561 9.636 6.201 6.110 4.517 5.863 2.825 2.718 2.259 7.294 4.072 1.655 4.686 10.846 0.938 2.018 3.988 4.449 2.146 2.579 3.952 3.672 498 chr1 145506485 145508924 + 0 NA exon (NM_005105, exon 1 of 6) exon (NM_005105, exon 1 of 6) 147 NM_005105 9939 Hs.591455 NM_005105 ENSG00000265241 RBM8A BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1 RNA binding motif protein 8A protein-coding 9.091 6.289 7.351 8.348 7.878 3.822 11.342 5.827 0.717 5.318 3.236 8.082 24.989 6.868 0.265 14.167 9.101 15.356 21.015 16.824 16.915 13.792 8.372 22.935 24.727 8.847 10.905 12.209 18.430 10.926 10.486 15.603 18.092 6.990 9.207 11.242 11.656 6.561 3.488 7.617 9.977 1.396 3.476 11.342 8.082 2.394 7.527 7.643 4.332 8012 chr9 2014025 2018947 + 0 NA intron (NM_003070, intron 1 of 33) CpG 1267 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 3.352 9.046 4.898 2.496 3.129 1.568 3.831 2.414 0.390 1.546 1.022 3.768 16.575 0.199 0.050 2.012 3.469 5.274 7.743 6.189 4.081 4.833 1.656 11.674 10.716 3.462 5.196 1.711 3.437 5.032 8.451 2.118 6.344 2.025 2.578 0.819 nan 3.122 2.547 0.406 7.772 0.542 4.545 3.831 3.768 2.388 1.867 2.653 0.725 2028 chr12 76175396 76181038 + 0 NA Intergenic MamGypLTR1a|LTR|Gypsy 247339 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding nan 1.146 0.984 0.576 0.265 0.256 0.392 1.705 0.123 0.929 0.367 0.541 1.639 0.096 0.066 0.452 0.285 0.139 0.463 1.530 1.890 0.971 0.270 0.235 0.315 3.154 2.975 nan 2.444 0.395 0.272 0.166 0.268 0.630 0.528 0.262 0.381 nan 1.655 1.568 0.428 0.202 0.069 0.392 0.541 0.516 4.955 0.094 0.130 5474 chr3 114264017 114308735 + 0 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) 56677 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 1.001 nan 0.692 0.102 0.411 0.218 0.115 0.567 0.158 0.108 0.119 0.190 0.221 0.039 0.088 0.810 0.474 4.705 4.566 0.328 nan 0.633 0.280 0.246 0.292 nan 1.025 0.211 0.230 0.744 0.304 0.242 0.305 0.065 0.097 0.324 0.559 0.508 0.471 0.051 0.093 0.013 0.055 0.115 0.190 0.037 0.027 0.106 0.123 462 chr1 116378825 116386139 + 0 NA intron (NM_001111061, intron 1 of 1) intron (NM_001111061, intron 1 of 1) 851 NM_001111061 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding nan 1.185 5.554 0.175 0.183 0.065 0.210 0.082 0.087 0.063 0.145 0.115 2.225 0.060 0.135 0.455 0.404 0.355 0.573 6.260 nan 0.078 0.041 1.189 1.288 1.434 2.093 1.621 2.611 11.549 16.122 5.664 7.620 4.112 3.171 0.111 0.239 2.690 1.436 0.045 0.108 0.862 4.867 0.210 0.115 1.568 0.041 3.684 0.017 6359 chr5 90672933 90682794 + 0 NA intron (NR_027435, intron 1 of 2) intron (NR_027435, intron 1 of 2) 1327 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding nan 8.856 4.448 4.805 11.158 5.673 3.953 2.297 0.293 2.133 1.113 15.910 4.883 0.155 6.022 7.626 8.963 11.938 13.573 8.053 7.777 3.779 10.012 10.045 7.142 7.810 7.432 15.276 14.883 20.169 3.286 6.092 14.879 12.489 10.213 nan 2.751 1.558 3.599 6.297 2.302 2.832 3.953 0.749 2.787 3.294 2.605 8021 chr9 3489693 3532568 + 0 NA intron (NM_134428, intron 1 of 17) intron (NM_134428, intron 1 of 17) 14871 NM_001282116 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 1.719 3.461 2.370 1.197 3.208 1.634 1.631 1.031 0.108 2.388 1.281 2.055 2.960 1.576 0.109 1.958 1.719 5.347 7.224 2.945 2.906 5.643 3.280 3.626 3.787 5.271 6.041 2.376 4.056 1.681 1.598 1.308 2.121 6.207 6.868 1.363 nan 2.672 1.692 1.573 1.297 1.326 1.249 1.631 2.055 0.371 0.883 1.060 0.202 5932 chr4 72457164 72471813 + 0 NA Intergenic Intergenic 185591 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDBG|VDBP GC, vitamin D binding protein protein-coding 0.638 0.513 0.918 1.696 0.280 0.255 0.167 0.148 0.044 0.107 0.084 0.929 2.702 0.037 0.085 0.463 0.234 0.235 0.380 1.625 2.325 0.122 0.108 0.212 0.212 3.739 4.272 3.112 3.647 0.536 0.305 0.098 0.204 0.170 0.196 0.131 0.140 0.133 0.169 0.323 0.689 0.019 1.024 0.167 0.929 0.100 0.500 0.047 0.051 5665 chr3 172459419 172471047 + 0 NA Intergenic L2b|LINE|L2 -3242 NM_001258316 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 2.408 2.003 1.486 1.802 2.126 1.184 0.678 2.004 0.387 1.136 0.777 1.490 2.208 2.044 0.110 1.382 1.412 2.335 3.586 2.707 2.586 7.514 3.237 4.301 4.336 1.828 2.325 2.296 2.857 2.658 2.459 0.558 1.229 2.515 3.032 2.514 2.543 1.243 0.775 1.034 0.713 0.776 0.750 0.678 1.490 0.309 0.688 0.997 1.072 4581 chr2 166418933 166435318 + 0 NA intron (NM_001172173, intron 3 of 6) intron (NM_001172173, intron 3 of 6) -1721 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 0.995 1.173 nan 1.275 1.255 0.606 1.686 0.344 0.039 1.128 0.702 0.622 2.838 0.041 0.066 2.397 2.893 2.017 2.325 1.014 0.995 2.991 1.644 1.682 1.590 4.145 4.306 1.261 1.292 2.963 2.368 1.439 2.602 0.054 0.012 1.375 2.025 1.528 0.717 0.044 1.688 0.006 0.341 1.686 0.622 0.279 0.390 1.865 0.218 3818 chr18 53013547 53025526 + 0 NA intron (NM_001330604, intron 6 of 19) intron (NM_001330604, intron 6 of 19) -30446 NM_001243234 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 0.857 0.868 0.096 0.652 0.227 0.182 0.181 0.058 0.117 0.199 0.210 0.272 0.296 0.062 0.476 0.393 5.349 6.396 0.476 0.758 0.768 0.426 0.648 0.569 1.038 1.142 0.263 0.355 0.720 0.560 0.212 0.276 0.378 0.513 0.264 0.545 nan 1.247 0.029 0.142 0.087 0.080 0.182 0.210 0.048 0.106 0.058 0.132 3102 chr16 29814971 29821904 + 0 NA exon (NM_001042539, exon 2 of 6) exon (NM_001042539, exon 2 of 6) 579 NM_001276276 4150 Hs.23650 NM_002383 ENSG00000103495 MAZ PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87 MYC associated zinc finger protein protein-coding 5.238 3.137 nan 7.282 6.019 3.023 6.638 1.348 0.138 1.810 1.115 7.724 14.741 4.807 0.133 4.892 5.918 3.866 5.516 7.005 6.514 nan 3.718 9.260 8.503 3.176 4.073 8.512 12.041 6.672 7.670 4.088 8.497 6.174 6.322 4.830 5.808 2.790 1.285 5.939 4.760 2.623 4.149 6.638 7.724 2.670 4.519 4.547 2.441 8414 chrX 136435382 136454627 + 0 NA Intergenic Intergenic -203282 NM_001330661 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 0.455 0.890 1.122 0.032 1.027 0.482 1.264 0.024 0.033 0.238 0.115 0.012 0.229 0.011 0.037 0.251 0.114 0.160 0.288 0.119 0.142 5.856 3.035 0.121 0.117 0.117 0.200 0.106 0.095 0.293 0.121 0.073 0.095 0.024 0.058 0.131 0.245 1.361 0.772 0.023 0.046 0.005 0.016 1.264 0.012 0.025 0.047 0.032 2198 chr12 124980447 125063176 + 0 NA intron (NM_001077261, intron 1 of 47) intron (NM_001077261, intron 1 of 47) 30199 NM_006312 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 1.743 1.836 1.543 0.812 1.030 0.520 1.906 0.904 0.145 0.758 0.503 1.674 3.291 0.849 0.099 1.493 2.387 1.391 2.569 2.250 2.304 nan 0.662 0.819 0.814 1.691 2.487 2.674 3.673 3.928 3.764 0.717 1.183 1.137 1.270 1.484 3.196 1.683 1.053 1.355 1.439 0.373 0.515 1.906 1.674 0.964 1.216 0.562 0.693 2288 chr13 43181058 43195435 + 0 NA Intergenic MLT2B1|LTR|ERVL 39955 NM_003701 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf tumor necrosis factor superfamily member 11 protein-coding 0.724 0.653 0.600 0.221 0.346 0.193 0.135 0.073 0.124 0.426 0.288 0.208 0.394 0.045 0.066 0.633 0.469 0.089 0.133 2.620 2.506 5.315 1.646 0.170 0.134 0.237 0.403 0.311 0.362 0.469 0.254 0.265 0.474 0.116 0.116 0.273 0.422 1.921 1.087 0.748 0.989 0.027 0.059 0.135 0.208 0.054 0.021 0.104 0.060 2954 chr15 75015893 75031044 + 0 NA Intergenic Intergenic -5517 NM_000499 1543 Hs.72912 NM_000499 ENSG00000140465 CYP1A1 AHH|AHRR|CP11|CYP1|CYPIA1|P1-450|P450-C|P450DX cytochrome P450 family 1 subfamily A member 1 protein-coding 0.557 0.999 0.521 0.245 0.504 0.180 0.483 0.137 0.126 0.249 0.141 0.213 7.152 0.215 0.086 0.364 0.337 0.960 2.165 0.745 0.784 1.016 0.287 0.144 0.160 0.144 0.292 0.700 0.810 0.892 0.650 0.289 0.342 0.088 0.127 0.229 0.476 0.796 0.468 0.307 0.745 0.025 0.052 0.483 0.213 0.180 0.242 0.039 0.074 842 chr1 211430352 211434997 + 0 NA promoter-TSS (NM_001136224) promoter-TSS (NM_001136224) -34 NM_001136224 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 10.177 7.712 9.305 5.264 10.562 6.177 9.016 4.673 0.937 5.225 2.643 9.214 16.763 7.585 0.134 8.058 10.515 11.367 15.003 16.461 14.352 8.055 3.267 20.092 20.085 6.404 nan 11.358 14.881 8.495 10.392 3.441 6.170 9.401 7.109 9.246 11.863 4.015 1.969 7.812 4.994 2.600 4.880 9.016 9.214 2.439 4.958 2.850 4.534 7211 chr7 26233538 26246345 + 0 NA promoter-TSS (NM_007276) promoter-TSS (NM_007276) 472 NM_031243 3181 Hs.487774 NM_002137 ENSG00000122566 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 8.075 4.107 7.549 5.300 6.136 3.759 4.055 2.968 0.241 3.822 1.879 7.314 10.635 7.508 0.274 7.370 7.015 6.349 nan 11.056 9.337 7.145 3.929 12.136 12.466 5.216 6.432 7.153 9.822 7.782 9.572 3.042 7.790 9.344 8.498 9.068 8.128 3.077 1.560 4.454 4.564 2.020 3.817 4.055 7.314 1.300 3.197 2.724 3.492 2410 chr13 102060038 102071231 + 0 NA intron (NM_052867, intron 1 of 43) intron (NM_052867, intron 1 of 43) 3179 NM_052867 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 0.776 0.776 0.518 0.213 0.513 0.264 2.155 0.071 0.059 0.647 0.321 0.707 1.826 0.106 0.050 0.804 0.693 0.718 1.308 1.926 2.107 2.404 1.085 0.189 0.179 0.838 nan 0.205 0.383 1.349 1.564 0.121 0.125 0.098 0.144 0.692 nan 0.444 0.321 7.730 0.549 0.060 0.398 2.155 0.707 0.336 0.122 0.026 0.221 1737 chr11 130180894 130194323 + 0 NA Intergenic L1M2|LINE|L1 -3001 NM_001301098 29068 Hs.721470 NM_014155 ENSG00000196323 ZBTB44 BTBD15|HSPC063|ZNF851 zinc finger and BTB domain containing 44 protein-coding 1.174 nan 1.200 1.437 1.531 0.823 0.754 0.222 0.024 0.778 0.544 1.452 nan 1.064 0.130 3.679 3.930 1.323 1.695 1.760 1.824 1.961 0.702 2.608 2.707 1.081 1.536 1.837 2.379 2.014 2.230 4.195 6.362 1.461 1.318 1.505 2.247 1.283 0.816 0.940 1.386 0.403 1.021 0.754 1.452 0.101 0.584 3.432 0.581 5789 chr3 193834406 193861915 + 0 NA Intergenic Intergenic -5771 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding nan 3.712 2.368 3.411 3.162 1.592 1.130 2.771 0.298 1.779 0.771 2.516 nan 1.604 0.079 1.856 2.560 2.762 8.699 2.050 1.559 4.964 2.719 2.771 2.644 0.590 1.123 4.140 5.053 2.566 2.593 1.188 1.681 2.472 2.352 1.282 1.607 1.346 0.751 4.157 0.677 0.686 1.049 1.130 2.516 0.712 1.081 1.151 0.606 3411 chr17 41183244 41195212 + 0 NA Intergenic Intergenic 11970 NM_005440 8153 Hs.603111 NM_005440 ENSG00000108830 RND2 ARHN|RHO7|RhoN Rho family GTPase 2 protein-coding 1.470 1.022 nan 0.395 0.601 0.258 0.548 0.106 0.108 0.234 0.193 0.282 0.668 0.127 0.102 4.245 6.611 1.065 0.861 0.856 nan 0.707 0.303 1.182 1.233 0.450 1.013 0.430 nan 1.960 1.859 1.027 1.639 0.369 0.316 1.337 2.162 0.814 0.608 0.255 0.208 0.072 1.913 0.548 0.282 0.056 0.074 0.796 0.690 7048 chr6 151770667 151778616 + 0 NA intron (NM_001286562, intron 1 of 3) intron (NM_001286562, intron 1 of 3) 1248 NM_001286562 79624 Hs.15929 NM_024573 ENSG00000146476 ARMT1 C6orf211 acidic residue methyltransferase 1 protein-coding nan 2.926 2.190 2.484 1.625 1.070 2.107 1.270 0.204 0.768 0.307 1.702 3.655 1.777 0.166 3.069 3.198 2.827 3.703 2.825 nan 5.389 1.819 3.424 3.099 1.399 2.024 2.503 3.679 5.721 6.363 1.628 3.598 1.870 1.962 8.063 10.200 1.615 0.605 0.906 1.580 0.308 0.686 2.107 1.702 0.379 1.471 1.022 3.530 8346 chr9 140188986 140211739 + 0 NA TTS (NM_017820) TTS (NM_017820) -3659 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH-regulated ankyrin repeat protein protein-coding 1.734 1.459 1.247 4.193 0.989 0.502 1.503 0.291 0.219 0.497 0.182 1.737 0.970 1.224 0.078 1.148 2.069 0.806 nan 2.078 nan 2.238 0.619 0.736 0.712 0.279 0.436 3.994 6.693 1.534 1.682 0.826 1.039 1.772 1.877 0.838 0.937 0.679 0.552 0.964 0.383 0.371 0.532 1.503 1.737 1.015 3.365 0.482 0.135 4177 chr2 2686880 2705029 + 0 NA Intergenic Intergenic -360869 NM_015025 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 0.424 0.486 0.761 0.213 1.271 0.648 0.438 0.045 0.054 0.344 0.204 2.945 3.177 0.042 0.103 0.387 0.483 0.231 0.270 3.718 3.930 1.454 0.398 0.165 0.167 0.629 0.928 3.612 2.539 0.540 0.462 0.259 0.253 0.163 0.154 0.188 0.197 1.206 0.820 1.404 0.882 0.016 0.066 0.438 2.945 0.344 1.533 0.032 0.028 6611 chr6 10393598 10431944 + 0 NA promoter-TSS (NM_001032280) promoter-TSS (NM_001032280) -164 NM_001032280 7020 Hs.519880 NM_003220 ENSG00000137203 TFAP2A AP-2|AP-2alpha|AP2TF|BOFS|TFAP2 transcription factor AP-2 alpha protein-coding 1.411 nan 2.234 2.064 1.542 0.885 3.022 0.534 0.134 1.227 0.793 3.999 3.274 0.717 0.101 2.791 3.269 2.435 3.686 2.354 1.930 3.556 1.257 2.109 2.073 1.071 1.471 0.255 0.253 1.003 0.712 0.758 1.513 4.391 4.045 0.776 1.311 1.857 1.023 1.187 0.572 1.372 2.568 3.022 3.999 0.041 0.732 0.733 0.362 820 chr1 205609163 205620258 + 0 NA Intergenic L2b|LINE|L2 -12710 NM_021795 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ELK4, ETS transcription factor protein-coding 1.712 1.495 1.122 0.204 0.850 0.360 0.668 0.285 0.158 0.254 0.326 0.977 0.396 0.058 0.108 0.483 0.450 0.544 0.713 1.957 1.980 0.585 0.305 nan nan 1.034 1.210 1.009 1.261 1.035 0.872 0.352 0.339 0.353 0.275 0.519 1.282 1.249 0.810 2.014 4.830 0.130 0.335 0.668 0.977 0.745 0.073 0.580 0.156 5454 chr3 108474169 108479758 + 0 NA promoter-TSS (NM_032579) promoter-TSS (NM_032579) -833 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding nan nan 0.529 0.555 2.733 1.375 0.809 0.162 0.193 0.029 0.086 4.645 0.472 0.019 0.031 0.362 0.116 0.182 0.246 2.206 2.539 18.346 6.336 0.272 0.196 0.092 0.183 3.628 2.260 0.747 0.360 0.100 0.059 0.114 0.171 0.199 0.233 0.750 0.604 0.289 0.223 0.035 0.885 0.809 4.645 0.051 0.018 0.110 8252 chr9 117256118 117268626 + 0 NA intron (NM_015404, intron 1 of 11) intron (NM_015404, intron 1 of 11) 3123 NM_001083885 25861 Hs.93836 NM_015404 ENSG00000095397 WHRN CIP98|DFNB31|PDZD7B|USH2D|WI whirlin protein-coding 2.133 2.271 nan 2.974 1.234 0.615 2.920 0.300 0.078 1.484 0.612 2.778 9.125 0.969 0.087 0.283 0.298 0.580 0.977 4.456 4.729 2.480 0.907 0.722 0.726 0.857 1.168 3.976 nan 1.659 1.179 0.775 1.581 3.929 3.070 0.553 0.994 nan 1.640 7.624 1.762 0.995 0.069 2.920 2.778 0.937 1.709 0.863 0.138 6129 chr5 1289186 1302213 + 0 NA promoter-TSS (NM_001193376) promoter-TSS (NM_001193376) -537 NM_001193376 7015 Hs.492203 NM_198253 ENSG00000164362 TERT CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT telomerase reverse transcriptase protein-coding 0.640 1.060 2.753 0.846 0.767 0.369 0.343 0.221 0.137 0.456 0.190 1.652 0.736 0.499 0.089 5.554 4.557 0.216 nan 8.936 6.922 2.774 0.772 0.276 0.325 0.232 0.528 nan 4.489 nan 0.762 0.530 0.432 0.748 0.645 0.207 0.492 3.186 nan 2.375 2.755 0.108 0.187 0.343 1.652 0.595 1.249 0.168 0.170 1379 chr11 34605938 34613383 + 0 NA Intergenic Intergenic -32928 NM_012153 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 0.651 1.311 nan 0.189 0.596 0.324 0.379 0.201 0.108 0.183 0.184 1.084 1.523 0.014 0.126 1.235 1.279 6.985 6.163 0.401 0.724 2.934 0.797 0.662 0.732 0.344 0.550 0.348 0.322 0.469 0.173 0.573 0.721 0.185 0.237 0.135 nan 0.717 0.622 0.105 0.116 0.032 0.379 1.084 0.017 0.031 0.096 0.016 2496 chr14 24546766 24565374 + 0 NA Intergenic Intergenic -2238 NM_006177 4901 Hs.652297 NM_006177 ENSG00000129535 NRL D14S46E|NRL-MAF|RP27 neural retina leucine zipper protein-coding nan 1.871 2.196 2.088 1.572 0.923 0.954 1.729 0.301 0.607 0.319 1.543 3.020 2.088 0.130 1.098 1.691 1.085 1.770 2.235 2.164 3.241 1.032 2.329 2.379 2.478 3.237 3.176 nan 8.474 7.663 1.284 2.076 1.620 1.390 1.429 5.224 1.473 0.804 3.493 2.033 0.544 1.693 0.954 1.543 0.477 1.081 1.118 3.604 7844 chr8 102613377 102622015 + 0 NA intron (NM_001330593, intron 8 of 15) intron (NM_001330593, intron 8 of 15) 113028 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 1.325 nan nan 1.023 1.434 0.927 1.067 0.262 0.130 0.181 0.133 2.382 2.120 0.091 0.055 0.722 1.069 5.585 10.443 3.047 3.081 5.570 2.548 0.587 0.606 0.709 nan 1.921 nan nan 0.170 0.971 1.904 3.679 3.625 0.150 nan 1.804 1.058 0.401 0.445 0.996 0.222 1.067 2.382 0.877 0.470 0.128 5248 chr22 35758038 35781438 + 0 NA Intergenic AluSp|SINE|Alu -7322 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding nan 1.049 1.094 0.226 0.669 0.397 0.777 0.704 0.282 0.141 0.113 0.460 0.669 0.815 0.114 1.008 1.301 0.996 nan 0.500 0.541 3.373 0.354 0.862 0.859 0.873 nan 0.837 1.344 2.235 1.527 0.406 0.330 0.914 4.624 1.117 nan 0.778 0.502 0.241 0.201 0.062 0.129 0.777 0.460 0.257 0.903 0.152 0.514 5567 chr3 137892152 137915685 + 0 NA Intergenic Intergenic -2172 NM_001282342 25852 Hs.744868 NM_014154 ENSG00000114098 ARMC8 GID5|HSPC056|S863-2|VID28 armadillo repeat containing 8 protein-coding 2.447 nan nan 1.558 1.432 0.807 0.824 0.839 0.246 0.978 0.676 1.075 1.615 0.627 0.086 1.887 1.972 1.811 2.559 2.643 2.496 4.934 1.849 3.090 3.370 2.144 2.778 1.572 2.122 nan 3.194 1.397 2.351 0.848 0.850 1.616 2.092 1.472 0.857 0.953 0.865 0.177 0.782 0.824 1.075 0.322 0.587 0.528 0.522 4948 chr20 36614220 36631298 + 0 NA intron (NM_014657, intron 8 of 8) AluSx3|SINE|Alu 39111 NM_014657 9675 Hs.655481 NM_014657 ENSG00000101407 TTI1 KIAA0406|smg-10 TELO2 interacting protein 1 protein-coding 1.240 2.392 0.909 0.237 0.460 0.300 0.396 0.254 0.075 0.175 0.078 0.232 1.167 0.075 0.121 0.593 0.681 0.511 1.128 0.558 nan 1.049 0.766 0.372 0.393 0.404 0.747 0.685 1.097 2.086 1.973 0.402 0.936 0.088 0.134 1.841 nan 0.434 0.241 0.652 0.552 0.017 0.467 0.396 0.232 0.369 0.071 0.862 1.432 964 chr1 244208062 244230466 + 0 NA 3' UTR (NM_001278196, exon 2 of 2) 3' UTR (NM_001278196, exon 2 of 2) 2757 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding nan 1.782 nan 1.942 1.623 0.944 1.083 3.672 0.337 1.087 0.467 1.977 2.019 0.368 0.101 0.765 1.155 2.320 1.873 4.839 4.125 2.713 0.668 1.102 1.125 5.213 6.767 1.402 1.860 7.308 9.684 0.383 1.202 2.881 2.475 4.177 6.140 1.167 0.833 0.196 0.514 0.655 1.822 1.083 1.977 0.561 1.275 0.470 0.868 4192 chr2 5825078 5839018 + 0 NA promoter-TSS (NR_110580) promoter-TSS (NR_110580) -751 NM_003108 6664 Hs.432638 NM_003108 ENSG00000176887 SOX11 MRD27 SRY-box 11 protein-coding 4.252 1.835 0.762 0.060 5.404 2.662 3.193 0.048 0.127 2.644 1.674 2.027 14.521 0.055 0.089 3.905 5.334 0.287 0.683 9.781 7.305 6.340 2.594 0.036 0.039 0.930 1.508 4.899 8.866 5.349 7.062 0.618 0.943 0.583 0.298 3.932 3.794 0.106 0.126 3.408 6.053 0.198 4.892 3.193 2.027 1.488 3.124 0.234 2.228 814 chr1 205241603 205295020 + 0 NA Intergenic AluY|SINE|Alu 22608 NM_030952 81788 Hs.497512 NM_030952 ENSG00000163545 NUAK2 SNARK NUAK family kinase 2 protein-coding 1.549 2.966 1.584 1.090 1.055 0.524 1.379 0.972 0.298 0.761 0.546 1.697 3.829 3.053 0.207 0.675 0.785 1.664 5.332 2.139 2.372 1.533 0.423 nan nan 0.421 0.817 3.020 3.414 0.856 0.623 0.297 0.316 0.823 0.752 0.856 1.929 1.480 0.870 3.021 2.293 0.246 0.419 1.379 1.697 0.227 1.016 0.087 0.298 884 chr1 224031578 224035164 + 0 NA exon (NM_001031685, exon 1 of 18) exon (NM_001031685, exon 1 of 18) 303 NM_001031685 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 10.099 7.357 9.405 10.795 6.487 3.627 7.650 5.056 0.615 4.775 1.967 6.276 15.582 4.399 0.178 11.073 9.256 14.337 21.402 15.570 nan 8.967 4.215 26.259 26.870 5.110 6.435 10.615 18.196 7.230 7.634 2.915 5.477 8.182 7.117 10.787 8.066 4.247 2.893 5.516 2.647 1.070 3.362 7.650 6.276 1.522 2.872 0.913 2.966 4927 chr20 32197208 32201783 + 0 NA intron (NM_001039709, intron 3 of 10) AluJr|SINE|Alu 49324 NM_005093 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 translocation partner 2 protein-coding 1.244 1.696 1.511 0.466 1.148 0.645 0.376 0.338 0.071 0.275 0.129 0.287 0.614 0.118 0.134 2.991 1.935 1.779 0.648 0.614 nan 1.332 0.605 19.592 19.844 1.212 1.738 0.706 0.833 0.902 0.462 9.146 8.312 0.174 0.209 0.924 nan 0.538 0.326 0.084 0.196 0.021 0.160 0.376 0.287 0.022 0.044 4.233 0.489 5286 chr22 42931442 42937212 + 0 NA Intergenic AluJo|SINE|Alu -15541 NR_104301 253190 Hs.728878 NM_014509 ENSG00000183569 SERHL2 dJ222E13.1 serine hydrolase-like 2 protein-coding 0.811 nan 0.830 1.624 0.468 0.225 0.136 0.050 0.143 0.753 0.171 0.554 0.504 0.094 0.169 0.428 0.488 0.327 0.567 0.297 0.338 4.902 1.305 0.175 0.201 0.280 nan 4.983 4.033 nan 0.196 0.307 0.354 1.345 1.276 0.196 0.642 1.033 0.774 0.263 0.760 0.129 0.136 0.554 9.020 0.069 0.108 253 chr1 41155844 41160158 + 0 NA promoter-TSS (NR_024567) promoter-TSS (NR_024567) -68 NR_024567 100130557 Hs.233458 NR_024567 NFYC-AS1 0808y08y NFYC antisense RNA 1 ncRNA 27.539 3.527 nan 3.499 4.758 2.417 4.158 2.540 0.333 2.531 1.416 7.409 10.069 4.285 0.245 5.834 5.292 6.923 10.031 9.270 9.306 4.703 3.236 11.652 12.781 6.190 nan 10.707 14.443 8.546 7.988 9.434 nan 3.758 3.876 7.135 6.616 3.300 1.413 4.005 3.368 0.728 3.695 4.158 7.409 1.354 1.883 3.834 2.235 7223 chr7 27182054 27220711 + 0 NA TTS (NM_152739) TTS (NM_152739) 3767 NM_152739 3205 Hs.659350 NM_152739 ENSG00000078399 HOXA9 ABD-B|HOX1|HOX1.7|HOX1G homeobox A9 protein-coding 6.991 2.937 1.686 0.847 2.332 1.164 0.939 0.381 0.070 1.852 1.000 4.195 1.543 2.014 0.136 4.314 5.966 6.913 nan 8.846 7.145 2.758 0.970 1.987 2.093 3.738 5.164 7.045 8.371 2.570 2.763 3.792 8.735 3.422 2.936 0.351 nan 2.265 1.199 2.564 3.098 1.135 0.663 0.939 4.195 0.707 0.202 3.405 0.185 63 chr1 8873587 8891075 + 0 NA Intergenic Intergenic -4632 NM_001042681 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 2.551 nan 3.279 7.838 1.935 1.121 1.662 1.422 0.304 1.118 0.666 1.336 4.033 1.436 0.131 1.841 2.562 1.346 2.225 6.598 7.071 3.564 0.989 3.329 3.415 2.309 nan nan 11.305 nan 3.806 2.005 3.127 1.560 1.710 2.734 4.790 1.988 0.991 2.555 3.475 0.423 0.650 1.662 1.336 0.580 1.488 1.700 1.378 7919 chr8 126434304 126449696 + 0 NA promoter-TSS (NM_025195) promoter-TSS (NM_025195) -563 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding nan nan nan 3.292 6.223 3.499 1.727 1.625 0.221 1.811 0.604 3.902 nan 1.383 0.114 3.520 5.192 3.168 4.669 4.683 3.601 5.987 2.362 nan nan 1.814 2.315 3.548 5.315 3.451 5.196 4.028 8.497 2.918 2.619 3.572 3.898 1.010 0.769 2.918 2.391 0.564 2.522 1.727 3.902 1.222 3.029 5.863 1.721 1334 chr11 19259776 19267219 + 0 NA promoter-TSS (NM_024680) promoter-TSS (NM_024680) -295 NM_001256372 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 1.494 nan 1.561 2.439 1.130 0.689 1.117 1.291 0.107 0.451 0.266 1.388 10.086 1.238 0.076 nan 2.858 2.839 4.070 1.488 1.412 2.153 1.308 5.305 5.091 1.145 nan 2.004 2.552 1.585 1.253 0.986 1.609 1.598 2.157 0.892 0.795 0.889 nan 0.853 1.272 0.396 0.927 1.117 1.388 0.145 0.574 0.319 0.166 3776 chr18 43976988 43995552 + 0 NA intron (NM_001256758, intron 1 of 5) intron (NM_001256758, intron 1 of 5) 72083 NM_001256758 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|RNF111L2 ring finger protein 165 protein-coding nan 1.356 1.255 0.815 0.520 0.260 1.309 0.340 0.104 0.161 0.137 0.452 2.690 0.053 0.079 0.485 0.766 0.253 0.418 1.333 1.287 1.725 0.572 0.169 0.169 0.406 0.727 1.048 0.951 0.713 0.735 0.315 0.626 0.330 0.510 0.354 nan 2.172 1.401 4.266 1.265 0.097 0.256 1.309 0.452 0.241 0.049 0.964 0.307 7289 chr7 55494814 55509411 + 0 NA TTS (NM_018697) TTS (NM_018697) 68971 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding nan 1.882 1.412 0.820 0.467 0.320 0.313 0.165 0.121 0.973 0.386 1.780 1.794 0.129 0.131 0.574 0.680 0.344 0.404 4.300 3.537 2.100 0.570 0.146 0.232 0.383 0.627 3.648 5.076 0.445 0.252 0.273 0.344 0.160 0.139 0.402 0.736 3.540 1.848 1.221 0.309 0.033 0.130 0.313 1.780 0.061 2.162 0.048 0.175 5723 chr3 181522458 181527683 + 0 NA Intergenic L1MB8|LINE|L1 95358 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box 2 protein-coding 0.815 0.984 0.593 0.273 0.489 0.222 0.245 0.058 0.280 0.240 0.243 0.160 0.418 0.315 0.104 0.250 0.267 0.203 0.248 0.451 0.493 12.726 3.356 0.134 0.105 0.534 0.775 0.719 0.806 0.667 0.259 0.184 0.297 0.174 0.219 0.109 0.259 0.458 0.584 0.021 0.153 0.037 0.091 0.245 0.160 0.037 0.039 0.117 6272 chr5 56746262 56755503 + 0 NA Intergenic Intergenic 27754 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin, beta like 2 protein-coding nan nan 0.753 0.044 2.203 1.185 0.207 1.596 0.070 0.035 0.097 0.013 1.294 0.092 0.103 0.121 0.076 3.024 10.622 0.152 0.174 nan 0.076 0.129 0.177 1.217 1.496 0.129 0.149 nan 0.301 0.043 0.104 0.450 1.040 0.194 0.563 0.608 0.615 0.137 0.097 0.144 0.095 0.207 0.013 0.062 0.011 0.146 7399 chr7 96624130 96662929 + 0 NA promoter-TSS (NR_015448) promoter-TSS (NR_015448) -152 NR_015448 285987 Hs.34969 NR_015448 DLX6-AS1 DLX6-AS|DLX6AS|Evf-2|NCRNA00212 DLX6 antisense RNA 1 ncRNA nan 2.602 nan 0.835 10.472 5.384 2.098 0.104 0.093 5.544 2.961 1.891 3.047 0.647 0.129 0.377 0.237 7.638 9.533 1.861 1.798 10.887 4.277 0.298 0.354 1.092 1.532 0.988 1.239 0.547 0.510 0.343 0.709 12.821 9.898 0.679 nan 5.932 3.462 0.918 0.703 3.639 2.582 2.098 1.891 0.168 0.543 0.161 0.385 4050 chr19 39171602 39187654 + 0 NA intron (NM_001322033, intron 1 of 20) AluSx3|SINE|Alu 41372 NM_004924 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 1.831 1.744 1.411 1.112 1.020 0.466 0.772 1.842 0.500 0.565 0.147 0.365 3.518 0.210 0.114 0.473 0.816 2.115 7.059 0.685 0.986 2.493 0.611 1.766 1.894 0.945 1.520 1.223 1.654 nan 0.591 0.656 1.030 2.237 3.743 1.054 2.230 1.168 0.784 0.207 0.227 0.594 0.128 0.772 0.365 0.545 2.344 0.402 0.973 2447 chr13 111350506 111370724 + 0 NA Intergenic Intergenic -2088 NM_024537 79587 Hs.508725 NM_024537 ENSG00000134905 CARS2 COXPD27|cysRS cysteinyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 3.646 nan 3.042 6.291 3.821 2.085 3.902 1.219 0.265 1.110 0.629 3.918 7.526 2.228 0.108 6.561 6.928 3.454 5.096 6.338 5.441 7.100 3.537 3.676 3.614 0.739 1.036 5.121 7.052 3.686 4.238 2.555 4.604 6.019 5.839 4.204 3.964 0.972 0.521 5.496 5.308 1.593 3.986 3.902 3.918 0.601 2.206 1.696 1.010 3140 chr16 51456004 51500636 + 0 NA Intergenic Intergenic -293137 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding nan nan nan 0.190 0.262 0.144 0.656 0.065 0.065 0.098 0.095 0.123 0.251 0.029 0.076 0.336 0.223 0.166 0.238 0.255 0.289 0.080 0.049 0.342 0.377 0.103 nan nan nan nan 0.150 0.135 0.169 0.038 0.059 1.089 nan nan 0.544 0.026 0.056 0.013 0.211 0.656 0.123 0.024 0.043 0.073 0.816 1917 chr12 33135744 33151368 + 0 NA Intergenic LTR16E1|LTR|ERVL -93776 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 0.582 nan 0.509 1.117 7.354 3.736 0.260 0.052 0.030 0.413 0.178 3.198 0.541 0.070 0.117 0.402 0.216 0.292 0.477 2.399 2.372 0.509 0.175 0.350 0.281 0.139 0.319 0.109 0.172 0.419 0.164 0.106 0.159 0.008 0.048 0.151 0.304 2.249 1.302 0.039 0.075 0.369 0.260 3.198 0.031 0.052 0.028 0.079 3722 chr18 31493879 31508249 + 0 NA intron (NM_001198548, intron 7 of 8) MLT1C-int|LTR|ERVL-MaLR 127512 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding nan 1.066 0.832 1.546 3.154 1.598 0.950 0.055 0.001 0.922 0.627 2.081 0.594 0.023 0.070 0.397 0.291 0.241 0.295 1.222 1.769 6.338 2.834 0.201 0.145 0.380 0.588 nan 5.555 0.384 0.166 0.132 0.246 4.199 5.227 0.199 0.595 2.045 1.438 0.080 0.092 1.399 0.122 0.950 2.081 0.040 0.368 0.027 0.165 6364 chr5 91967808 91980932 + 0 NA Intergenic Intergenic 932679 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA nan 2.074 1.031 0.428 0.744 0.341 2.923 0.313 0.097 0.785 0.481 0.006 1.317 0.091 0.135 0.216 0.154 0.292 0.450 0.602 0.655 6.414 1.990 0.166 0.131 0.581 0.791 0.541 0.679 0.443 0.224 0.097 0.169 5.344 6.153 0.315 nan 1.459 0.639 0.081 0.343 1.509 0.183 2.923 0.006 1.959 0.038 0.009 318 chr1 55514773 55534285 + 0 NA intron (NR_110451, intron 7 of 9) intron (NR_110451, intron 7 of 9) 18634 NR_110451 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 1.602 1.930 4.229 0.138 0.282 0.123 0.249 0.160 0.082 0.153 0.159 0.092 5.894 0.096 0.101 0.311 0.331 0.245 0.469 0.689 0.791 0.542 0.158 0.445 0.450 0.442 1.018 0.442 0.804 1.270 1.526 0.265 0.277 0.348 0.324 0.408 nan 1.013 0.690 1.040 0.173 0.103 0.106 0.249 0.092 0.339 0.241 0.055 0.267 6469 chr5 139013256 139091760 + 0 NA intron (NM_001317203, intron 2 of 3) intron (NM_001317203, intron 2 of 3) -2517 NM_001317211 51523 Hs.189119 NM_016463 ENSG00000171604 CXXC5 CF5|HSPC195|RINF|WID CXXC finger protein 5 protein-coding 2.112 1.041 nan 0.520 0.685 0.339 1.008 0.864 0.195 0.283 0.152 0.846 1.667 0.593 0.101 2.333 3.417 2.158 2.131 1.045 0.916 0.915 0.308 5.147 5.223 1.333 1.954 1.933 2.201 1.796 1.849 1.971 3.386 0.760 0.754 0.853 1.596 0.577 0.442 0.871 1.017 0.161 0.214 1.008 0.846 0.764 1.451 2.548 0.274 4782 chr2 239142788 239168676 + 0 NA intron (NM_022817, intron 22 of 22) intron (NM_022817, intron 22 of 22) -6967 NM_001282434 55502 Hs.42949 NM_018645 ENSG00000144485 HES6 C-HAIRY1|HES-6|bHLHb41|bHLHc23 hes family bHLH transcription factor 6 protein-coding 2.381 nan 11.859 2.792 3.255 1.640 1.148 0.142 0.049 1.279 0.726 4.199 3.202 0.222 0.127 3.023 2.625 0.648 0.924 6.523 5.879 3.562 1.403 2.284 2.341 1.047 1.755 3.683 nan 4.080 5.122 2.250 3.204 1.616 1.406 2.495 5.272 1.128 0.629 2.530 1.830 0.562 1.885 1.148 4.199 0.375 1.280 1.442 1.525 3723 chr18 31695248 31712806 + 0 NA intron (NM_001198546, intron 2 of 9) L4|LINE|RTE -75451 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding nan 0.975 0.894 1.027 0.410 0.182 0.240 0.203 0.046 0.635 0.466 1.446 0.483 0.117 0.096 0.576 0.455 1.218 1.700 1.157 1.759 1.212 0.492 0.203 0.170 0.785 0.935 nan 2.561 0.684 0.363 0.266 0.400 2.329 4.044 0.628 2.016 1.304 0.692 0.079 0.111 0.912 0.224 0.240 1.446 0.094 0.116 0.159 0.254 1049 chr10 16559346 16565336 + 0 NA intron (NM_001010908, intron 1 of 1) CpG 1663 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding nan 1.026 0.677 5.991 3.251 1.736 0.128 0.145 0.035 0.701 0.608 5.174 2.078 0.192 0.055 0.305 0.342 0.259 0.279 3.624 3.039 12.075 5.004 0.231 0.174 0.217 0.382 0.472 0.976 0.401 0.553 0.368 0.462 4.375 3.725 2.792 4.259 1.659 0.840 0.028 0.445 1.970 0.831 0.128 5.174 0.115 0.141 4544 chr2 150965246 151026393 + 0 NA Intergenic Intergenic 348390 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding nan 0.649 nan 0.155 0.675 0.398 0.457 0.527 0.153 0.115 0.135 0.165 0.493 2.273 0.095 0.294 0.253 0.509 1.011 0.311 0.342 0.581 0.179 0.308 0.309 0.441 0.631 0.350 0.285 0.362 0.174 0.202 0.238 0.125 0.229 0.263 0.528 0.352 0.339 0.160 0.086 0.026 0.150 0.457 0.165 0.141 0.120 0.060 0.077 4932 chr20 33286327 33298782 + 0 NA promoter-TSS (NM_001329431) promoter-TSS (NM_001329431) 8 NM_001329431 58476 Hs.516994 NM_021202 ENSG00000078804 TP53INP2 C20orf110|DOR|PIG-U|PINH|dJ1181N3.1 tumor protein p53 inducible nuclear protein 2 protein-coding 3.705 4.621 2.839 2.108 2.643 1.468 1.127 1.387 0.258 1.312 0.488 2.643 7.181 1.603 0.137 3.255 4.682 3.503 4.915 2.971 nan 4.195 2.131 6.806 7.385 2.232 2.580 3.796 5.439 6.267 5.796 1.061 1.860 2.313 1.904 2.467 nan 1.028 0.683 1.713 3.826 0.353 0.503 1.127 2.643 0.796 1.827 0.619 1.724 4316 chr2 45015155 45072345 + 0 NA Intergenic Intergenic 124896 NR_103785 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 1.423 nan 1.552 0.140 0.814 0.395 0.449 0.087 0.051 0.183 0.161 0.544 0.326 0.055 0.106 0.284 0.189 0.205 0.298 nan 0.625 0.856 0.307 0.409 0.399 0.212 0.397 0.370 0.467 0.593 0.391 0.157 0.202 0.501 0.523 1.346 nan nan 0.622 0.063 0.196 0.165 0.055 0.449 0.544 0.036 0.060 0.053 2.025 5911 chr4 56410833 56415005 + 0 NA promoter-TSS (NM_001267843) promoter-TSS (NM_001267843) 157 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding nan 2.636 3.292 7.087 7.399 4.847 5.630 3.553 0.542 3.341 2.292 7.032 11.481 4.752 0.079 4.516 6.636 4.269 5.686 8.964 7.563 8.182 3.451 12.701 12.661 7.630 8.375 9.800 12.074 9.180 12.565 3.495 8.465 5.299 4.339 5.860 6.349 8.669 4.717 5.297 8.801 1.402 3.312 5.630 7.032 1.160 5.640 3.716 3.181 6553 chr5 172190510 172206044 + 0 NA promoter-TSS (NM_004417) promoter-TSS (NM_004417) -74 NM_004417 1843 Hs.171695 NM_004417 ENSG00000120129 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 2.369 3.177 2.545 1.899 1.398 0.807 1.433 2.098 0.302 1.115 0.555 3.267 5.457 2.292 0.146 1.690 2.621 3.422 nan 3.898 3.098 3.261 2.360 3.195 3.285 2.267 nan 2.812 5.086 2.750 3.052 0.961 1.707 2.000 2.316 2.002 2.069 1.381 1.046 0.744 2.062 0.248 1.119 1.433 3.267 0.760 1.929 0.491 0.443 5372 chr3 52048952 52098063 + 0 NA Intergenic Intergenic 16954 NM_001947 1849 Hs.591664 NM_001947 ENSG00000164086 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 1.194 1.324 nan 0.257 0.371 0.225 0.365 0.290 0.063 0.358 0.201 0.310 0.929 0.178 0.057 0.846 1.265 0.847 1.185 1.120 1.150 1.316 0.433 0.588 0.633 0.537 0.870 0.688 1.053 nan 3.771 0.645 0.921 0.845 0.786 1.291 3.144 1.314 0.649 0.293 0.529 0.194 0.313 0.365 0.310 0.461 0.808 0.284 1.278 3137 chr16 49777364 49790807 + 0 NA intron (NM_001271620, intron 2 of 7) intron (NM_001271620, intron 2 of 7) 72564 NM_015069 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 0.836 1.087 0.881 0.059 0.307 0.168 4.241 0.079 0.059 0.023 0.073 0.054 0.171 0.041 0.063 0.210 0.200 0.063 0.081 0.295 0.363 0.765 0.279 0.135 0.132 0.547 0.978 0.209 0.340 1.089 1.209 0.144 0.157 0.604 0.540 0.322 0.555 1.079 0.802 0.008 0.086 0.127 0.065 4.241 0.054 0.988 0.053 0.031 0.064 1732 chr11 129182267 129196376 + 0 NA Intergenic Intergenic -56560 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 0.876 1.983 3.449 1.443 0.769 0.337 0.229 0.031 0.045 1.163 0.585 1.402 2.860 0.107 0.094 0.933 1.050 0.392 0.596 0.743 0.806 3.427 1.002 0.616 0.720 0.578 0.941 7.307 7.276 1.548 1.686 1.668 2.134 2.117 1.726 0.270 nan 1.604 1.083 0.412 0.408 0.472 0.056 0.229 1.402 0.217 1.580 1.229 0.189 337 chr1 61349841 61383755 + 0 NA Intergenic MER113B|DNA|hAT-Charlie 69650 NR_110617 100996570 Hs.46616 NR_110617 ENSG00000237928 NFIA-AS2 - NFIA antisense RNA 2 ncRNA 2.363 0.832 nan 0.220 0.475 0.281 0.729 0.337 0.115 0.139 0.122 0.318 1.140 0.023 0.099 0.509 0.385 0.275 0.355 0.782 0.821 0.135 0.069 0.308 0.352 nan nan 0.775 nan 2.611 2.913 0.188 0.260 0.710 0.472 0.436 1.124 1.186 0.896 0.244 0.139 0.160 0.240 0.729 0.318 1.353 0.162 0.032 0.208 4550 chr2 153572492 153576817 + 0 NA promoter-TSS (NM_017892) promoter-TSS (NM_017892) 247 NR_024526 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 8.676 3.621 6.614 7.899 7.214 3.370 5.020 3.414 0.260 3.170 1.412 6.872 18.949 4.735 0.147 9.331 9.627 10.528 13.418 10.278 8.461 9.950 4.505 21.592 22.815 6.369 7.902 9.077 11.296 12.935 16.447 5.801 10.351 6.601 5.867 11.840 11.454 3.461 1.785 6.370 4.758 1.414 3.315 5.020 6.872 2.178 1.619 2.781 3.256 2776 chr14 102427516 102435007 + 0 NA exon (NM_001376, exon 1 of 78) exon (NM_001376, exon 1 of 78) 396 NM_001376 1778 Hs.614080 NM_001376 ENSG00000197102 DYNC1H1 CMT2O|DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22 dynein cytoplasmic 1 heavy chain 1 protein-coding 6.191 2.152 2.649 4.827 2.173 1.109 3.927 3.891 0.592 1.363 1.024 2.753 6.655 1.926 0.112 2.430 2.137 4.010 5.933 6.694 5.834 3.660 1.109 3.255 3.231 3.335 4.163 7.502 13.510 6.416 6.204 1.869 4.144 3.417 4.821 2.819 3.111 1.989 1.070 5.384 2.961 0.531 1.219 3.927 2.753 1.473 2.078 0.777 1.482 3763 chr18 42255320 42264278 + 0 NA promoter-TSS (NM_001130110) promoter-TSS (NM_001130110) -339 NM_001130110 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding nan 2.544 0.842 3.367 3.183 1.571 9.074 1.480 0.109 1.486 0.889 4.615 8.180 0.072 0.057 3.740 4.937 3.429 4.451 9.687 7.684 3.310 1.537 0.103 0.074 1.892 2.595 1.986 3.535 4.722 5.698 1.524 3.794 5.330 4.665 0.697 nan 4.659 2.312 4.332 1.340 2.287 3.590 9.074 4.615 1.560 1.700 1.907 0.551 3374 chr17 35860339 35881016 + 0 NA intron (NM_007026, intron 1 of 2) intron (NM_007026, intron 1 of 2) 20726 NM_007026 11072 Hs.91448 NM_007026 ENSG00000276023 DUSP14 MKP-L|MKP6 dual specificity phosphatase 14 protein-coding nan 1.043 0.714 0.068 0.483 0.263 0.288 0.178 0.094 0.187 0.174 0.209 0.416 0.121 0.100 3.835 3.676 1.397 1.274 nan 0.601 0.448 0.154 0.763 0.690 0.525 0.743 0.423 0.544 nan 3.169 1.242 2.067 0.191 0.147 0.781 1.429 0.492 0.529 0.121 0.169 0.042 0.219 0.288 0.209 0.221 0.063 1.804 0.313 430 chr1 107597557 107602303 + 0 NA exon (NM_018137, exon 1 of 1) exon (NM_018137, exon 1 of 1) 663 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 6.389 nan nan 3.409 3.571 1.857 4.649 1.152 0.272 1.718 0.984 3.477 11.551 2.532 0.069 2.812 3.573 3.439 4.913 6.831 nan 9.870 3.650 5.735 6.088 8.007 10.110 nan nan 6.650 8.137 1.709 3.570 4.104 2.919 6.903 nan 3.920 2.352 4.414 1.141 0.644 2.149 4.649 3.477 2.224 4.171 0.562 1.874 3258 chr17 7151735 7157357 + 0 NA promoter-TSS (NM_203415) promoter-TSS (NM_203415) 449 NM_001143775 23399 Hs.513913 NM_015343 ENSG00000175826 CTDNEP1 DULLARD|HSA011916|NET56 CTD nuclear envelope phosphatase 1 protein-coding 4.924 2.650 3.176 2.890 4.949 2.820 3.732 2.026 0.305 1.846 0.772 4.903 6.415 11.592 0.368 5.507 6.278 4.941 7.330 8.498 7.064 6.270 3.768 7.646 7.922 3.998 4.957 6.243 7.957 3.798 3.708 2.822 4.172 3.119 3.870 6.761 9.873 2.353 1.087 3.879 3.287 0.591 2.119 3.732 4.903 1.622 4.366 1.414 3.469 8308 chr9 135142234 135148411 + 0 NA intron (NM_015046, intron 24 of 25) intron (NM_015046, intron 24 of 25) 85050 NM_015046 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAR1|bA479K20.2 senataxin protein-coding nan 1.145 1.193 0.617 0.454 0.363 0.645 0.283 0.103 0.231 0.325 0.345 0.776 0.246 0.103 0.413 0.239 0.934 1.804 0.967 0.919 nan 0.248 1.600 1.591 0.594 0.820 2.271 2.737 1.155 0.720 0.223 0.204 1.317 9.326 0.523 0.947 0.942 0.411 0.449 0.088 0.062 0.063 0.645 0.345 0.330 0.870 0.032 0.179 5399 chr3 71613147 71636024 + 0 NA intron (NM_001012505, intron 2 of 6) intron (NM_001012505, intron 2 of 6) 8319 NM_001244808 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 1.672 0.909 2.165 1.322 0.878 0.409 0.582 0.464 0.070 1.350 0.634 1.183 3.179 0.205 0.075 0.574 0.709 3.228 nan 1.464 1.449 1.663 0.785 2.320 2.416 0.099 0.145 1.995 3.354 6.398 6.787 0.475 1.341 2.194 1.615 0.365 nan 1.409 0.817 0.176 1.321 0.578 1.120 0.582 1.183 0.217 1.616 0.626 0.168 4569 chr2 163692851 163697612 + 0 NA promoter-TSS (NM_033272) promoter-TSS (NM_033272) 26 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 2.965 3.981 nan 5.512 6.354 3.913 1.101 0.161 2.448 1.958 3.863 16.574 0.342 0.080 0.412 0.361 1.841 0.901 7.496 5.790 7.699 3.089 5.265 5.346 4.199 4.642 4.394 7.659 1.648 2.468 0.236 0.487 5.531 4.469 0.440 0.888 2.450 1.558 7.182 3.083 1.475 2.658 1.101 3.863 1.308 1.952 0.082 0.155 4395 chr2 68544954 68548262 + 0 NA 5' UTR (NM_001111101, exon 1 of 3) 5' UTR (NM_001111101, exon 1 of 3) 575 NM_001111101 25927 Hs.212885 NM_015463 ENSG00000119865 CNRIP1 C2orf32|CRIP1 cannabinoid receptor interacting protein 1 protein-coding 10.088 2.240 nan 1.981 2.306 1.684 9.262 3.883 0.344 3.181 1.854 3.006 6.656 0.163 0.113 1.148 0.909 0.194 0.770 10.636 8.312 13.596 4.859 0.235 0.302 7.736 9.422 8.440 16.355 17.646 21.003 2.751 2.483 2.241 1.997 11.375 11.558 4.439 3.514 2.682 3.337 0.423 1.621 9.262 3.006 1.240 5.703 0.782 2.656 1723 chr11 126867903 126875456 + 0 NA promoter-TSS (NM_001161707) promoter-TSS (NM_001161707) -913 NM_001301097 84623 Hs.376015 NM_032531 ENSG00000149571 KIRREL3 KIRRE|MRD4|NEPH2|PRO4502 kin of IRRE like 3 (Drosophila) protein-coding 0.674 2.931 0.863 1.156 2.293 1.101 3.664 0.019 0.021 0.578 0.284 1.569 12.128 0.086 0.100 0.744 0.585 0.416 0.472 3.655 3.656 4.904 1.054 0.116 0.110 0.157 0.291 1.645 2.106 1.213 1.355 0.918 1.426 4.218 2.614 0.322 nan 2.373 1.213 0.437 1.101 1.392 0.264 3.664 1.569 0.139 0.041 0.118 0.387 6601 chr6 7049745 7053829 + 0 NA Intergenic CpG -56043 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 3.292 2.418 2.988 3.006 1.833 0.901 0.898 0.129 0.096 0.884 0.379 9.713 1.490 0.424 0.176 0.599 1.274 0.284 0.463 1.934 1.568 6.755 1.959 5.235 5.620 0.292 0.488 6.880 9.006 1.292 1.546 0.466 0.792 1.697 1.134 1.385 2.148 1.355 1.118 0.423 0.325 0.282 4.018 0.898 9.713 0.569 1.081 0.144 0.880 5506 chr3 121280263 121294557 + 0 NA intron (NM_001012659, intron 1 of 4) intron (NM_001012659, intron 1 of 4) 632 NM_001012659 503582 Hs.224976 NM_001012659 ENSG00000186103 ARGFX - arginine-fifty homeobox protein-coding 1.491 nan 1.041 0.203 0.499 0.224 0.100 0.173 0.180 0.160 0.235 0.140 0.205 0.045 0.106 0.393 0.188 0.243 0.337 0.373 0.373 1.148 0.266 0.320 0.322 2.245 nan 0.329 0.433 2.571 1.855 0.233 0.309 0.073 0.128 1.922 6.185 0.623 0.493 0.035 0.137 0.047 0.177 0.100 0.140 0.055 0.029 0.070 3.497 1993 chr12 64293523 64314198 + 0 NA intron (NM_020762, intron 1 of 21) MLT2C1|LTR|ERVL 65327 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 0.931 0.925 0.778 0.234 3.045 1.623 0.380 0.629 0.171 0.871 0.689 0.534 0.858 1.559 0.110 0.599 0.877 1.321 4.132 0.425 nan 1.213 0.613 0.441 0.571 1.587 1.847 1.444 1.396 0.671 0.393 0.394 0.577 2.464 3.195 0.168 0.407 1.034 0.774 0.219 0.319 0.595 0.457 0.380 0.534 0.070 0.631 0.655 0.185 7984 chr8 143412970 143442095 + 0 NA intron (NM_145003, intron 2 of 13) intron (NM_145003, intron 2 of 13) 57078 NM_001291931 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 1.332 0.870 nan 0.659 0.555 0.276 0.218 0.057 0.056 0.237 0.151 2.374 1.563 0.022 0.056 0.744 1.338 0.209 0.260 nan 4.963 nan 0.184 0.517 0.438 0.459 0.712 2.281 2.791 1.020 1.490 0.376 0.478 0.351 0.312 0.200 0.344 1.240 0.747 5.205 1.024 0.075 0.169 0.218 2.374 0.349 0.665 0.047 0.086 1803 chr12 7032606 7041199 + 0 NA promoter-TSS (NM_001940) promoter-TSS (NM_001940) -578 NM_001940 1822 Hs.143766 NM_001940 ENSG00000111676 ATN1 B37|D12S755E|DRPLA|HRS|NOD atrophin 1 protein-coding 3.977 nan nan 3.123 3.562 1.963 5.565 1.072 0.151 1.720 1.064 3.774 5.731 5.448 0.209 2.019 3.603 3.202 4.078 nan 10.885 5.042 1.954 5.704 5.739 4.382 5.874 2.227 2.837 2.631 2.423 2.258 4.290 2.586 2.158 2.261 nan 1.472 0.720 4.314 1.968 0.842 4.440 5.565 3.774 6.295 1.084 1.661 1.805 5533 chr3 128199824 128217340 + 0 NA intron (NR_125398, intron 1 of 2) CpG-18893 536 NR_125398 101927167 Hs.287582 NR_125398 GATA2-AS1 - GATA2 antisense RNA 1 ncRNA 2.973 nan 1.756 0.838 0.812 0.314 0.827 1.486 0.260 0.744 0.302 1.401 1.104 0.990 0.064 2.412 2.220 3.141 4.119 2.074 1.426 3.790 1.093 1.044 1.123 1.689 nan 1.172 2.038 1.499 1.083 3.971 8.553 1.163 1.072 0.336 0.476 1.022 0.678 1.139 0.609 0.218 1.874 0.827 1.401 1.069 1.242 3.080 0.057 2356 chr13 79975241 79981891 + 0 NA intron (NM_001286631, intron 1 of 21) L2a|LINE|L2 1790 NM_001286632 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding nan nan 3.419 5.679 4.195 2.309 6.380 1.931 0.096 2.094 1.021 4.139 6.647 2.088 0.081 10.031 8.079 5.843 7.218 9.546 8.329 9.925 5.727 8.621 8.997 1.692 2.136 2.274 4.905 8.411 9.414 7.140 12.319 2.804 3.027 11.247 8.434 1.228 0.700 1.550 5.067 0.458 5.070 6.380 4.139 0.961 1.206 3.380 2.184 1220 chr10 115825407 115835862 + 0 NA Intergenic Intergenic 26828 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 0.485 nan 0.557 0.068 0.432 0.284 0.086 0.476 0.199 0.230 0.117 0.080 0.290 0.002 0.088 0.623 0.469 7.788 2.719 0.115 0.089 0.912 0.232 0.224 0.227 0.199 0.318 0.520 0.533 0.167 0.112 0.174 0.257 0.109 0.086 0.131 0.116 0.608 0.415 0.043 0.233 0.028 0.058 0.086 0.080 0.231 0.114 0.082 4263 chr2 25561624 25566171 + 0 NA intron (NM_175630, intron 1 of 3) intron (NM_175630, intron 1 of 3) 887 NM_022552 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 4.699 1.774 5.361 4.859 4.637 2.851 4.946 0.661 0.070 6.060 2.408 4.645 13.889 4.104 0.088 1.578 5.645 2.409 2.149 8.422 7.213 5.014 1.765 9.873 7.958 1.393 2.192 6.950 nan 2.165 2.968 2.044 6.116 3.407 2.134 2.062 2.841 1.942 0.894 7.497 9.833 1.125 3.652 4.946 4.645 1.346 5.117 1.803 1.253 4477 chr2 119579844 119613954 + 0 NA Intergenic Intergenic 8860 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 0.481 nan 0.418 0.044 0.204 0.103 0.088 0.734 0.090 0.065 0.102 0.060 nan 0.102 0.054 0.239 0.118 0.366 0.478 0.217 nan 0.132 0.085 0.256 0.246 0.101 0.155 0.194 0.222 0.317 0.107 7.609 13.322 0.239 0.145 0.151 0.285 0.108 0.191 0.091 0.036 0.087 0.042 0.088 0.060 0.015 0.009 6.980 0.095 6795 chr6 47623325 47641537 + 0 NA intron (NM_153839, intron 2 of 10) intron (NM_153839, intron 2 of 10) 8105 NM_153839 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 1.106 0.985 0.989 1.512 0.523 0.204 0.288 0.108 0.086 0.878 0.273 0.427 1.147 0.100 0.106 0.503 0.318 0.286 0.342 0.243 0.285 4.596 2.327 0.355 0.261 0.964 1.515 2.806 nan 0.989 0.624 0.178 0.322 1.322 1.971 0.731 1.895 0.868 0.765 0.015 0.054 0.268 0.074 0.288 0.427 0.186 0.481 0.131 0.434 3998 chr19 18805119 18821764 + 0 NA intron (NM_001098482, intron 1 of 14) AluSp|SINE|Alu 19016 NM_001098482 23373 Hs.371096 NM_015321 ENSG00000105662 CRTC1 MECT1|TORC-1|TORC1|WAMTP1 CREB regulated transcription coactivator 1 protein-coding 1.255 1.616 2.465 0.744 0.723 0.385 0.342 0.130 0.078 0.293 0.283 1.021 0.661 0.039 0.094 0.487 0.842 0.477 0.777 2.549 2.001 2.254 0.567 0.615 0.696 0.668 1.159 5.488 6.429 0.894 0.884 0.251 0.291 0.381 0.496 0.640 1.484 1.447 0.958 2.511 0.383 0.091 0.052 0.342 1.021 0.123 0.188 0.052 0.309 1511 chr11 72446685 72464121 + 0 NA intron (NM_001040118, intron 1 of 34) MIR3|SINE|MIR 8031 NM_001040118 116985 Hs.503165 NM_015242 ENSG00000186635 ARAP1 CENTD2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 protein-coding nan 1.233 1.360 0.448 0.785 0.405 0.308 0.455 0.048 0.198 0.122 0.662 1.762 0.510 0.112 2.084 4.361 1.000 0.970 1.690 1.871 1.117 0.501 2.764 2.987 0.628 1.165 1.770 2.476 1.197 1.260 1.909 2.451 0.504 0.646 0.913 1.962 0.808 0.569 0.466 0.791 0.093 0.188 0.308 0.662 0.138 0.669 0.813 0.475 663 chr1 173223308 173249936 + 0 NA intron (NR_037845, intron 2 of 2) Charlie25|DNA|hAT-Charlie -60170 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 tumor necrosis factor superfamily member 4 protein-coding nan nan nan 0.122 0.166 0.111 0.222 0.520 0.133 0.099 0.146 0.032 0.310 0.064 0.115 0.586 0.572 6.653 5.089 nan 0.376 0.146 0.083 0.238 0.266 0.209 0.374 0.248 0.280 0.349 0.141 0.440 0.833 0.065 0.095 0.170 nan 0.220 0.347 0.017 0.056 0.018 0.033 0.222 0.032 0.046 0.327 0.079 1465 chr11 64900411 64903892 + 0 NA promoter-TSS (NM_032431) promoter-TSS (NM_032431) -148 NM_172230 84447 Hs.75859 NM_032431 ENSG00000162298 SYVN1 DER3|HRD1 synoviolin 1 protein-coding nan 4.827 4.598 7.227 5.266 3.268 4.579 2.962 0.279 2.953 1.117 6.864 12.995 5.670 0.170 9.848 11.479 7.840 11.878 12.141 14.184 11.355 9.269 13.126 15.290 4.662 5.680 10.339 17.142 7.904 8.010 8.608 12.524 7.635 10.057 6.802 5.465 4.824 2.271 5.793 5.109 1.792 2.860 4.579 6.864 1.305 3.880 3.800 2.057 3436 chr17 46120685 46140649 + 0 NA intron (NM_001330261, intron 2 of 5) intron (NM_001330261, intron 2 of 5) 4981 NM_003204 4779 Hs.514284 NM_003204 ENSG00000082641 NFE2L1 LCR-F1|NRF1|TCF11 nuclear factor, erythroid 2 like 1 protein-coding 1.712 1.701 nan 2.018 3.032 1.513 1.959 2.452 0.299 1.604 0.726 1.878 4.355 1.567 0.140 3.165 3.503 2.600 3.903 2.478 nan 2.915 1.334 10.350 10.605 1.689 2.133 6.036 nan 3.350 2.780 4.263 4.484 1.976 2.419 2.286 4.888 1.434 0.796 1.544 3.406 0.506 1.163 1.959 1.878 0.588 1.267 1.523 0.922 102 chr1 16466229 16509133 + 0 NA Intergenic AluSc|SINE|Alu -5077 NM_004431 1969 Hs.171596 NM_004431 ENSG00000142627 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 1.555 0.852 nan 0.225 0.309 0.196 0.765 1.140 0.266 0.322 0.191 0.129 0.765 2.233 0.119 0.868 1.254 1.024 3.764 1.017 1.096 1.188 0.310 0.835 nan 0.569 nan 0.801 1.189 nan 0.537 0.503 0.628 0.244 0.344 0.467 0.928 0.870 0.593 0.042 0.043 0.026 0.148 0.765 0.129 0.218 0.294 0.201 0.211 6518 chr5 154235993 154239660 + 0 NA promoter-TSS (NM_001301083) promoter-TSS (NM_001301083) 17 NM_001301083 9337 Hs.26703 NM_004779 ENSG00000155508 CNOT8 CAF1|CALIF|Caf1b|POP2|hCAF1 CCR4-NOT transcription complex subunit 8 protein-coding 7.517 nan 4.557 5.977 9.893 5.829 3.666 3.487 0.331 2.508 1.649 8.296 19.194 8.491 0.347 7.188 6.938 8.111 11.300 12.470 10.270 9.405 5.006 11.689 12.306 6.587 8.399 9.728 14.935 10.771 12.412 6.321 8.665 12.177 11.118 8.211 7.679 3.514 2.348 4.160 7.254 2.292 3.441 3.666 8.296 1.531 4.426 4.405 3.841 6610 chr6 10380240 10390169 + 0 NA Intergenic CpG -27347 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 0.921 nan 0.938 0.976 1.400 0.612 0.293 0.085 0.048 0.887 0.456 0.835 0.358 0.054 0.099 4.284 4.160 8.094 7.382 0.555 0.452 3.213 0.833 1.882 1.976 0.154 0.376 0.112 0.114 0.443 0.203 1.739 3.803 5.412 5.926 0.242 0.421 0.573 0.566 0.090 0.233 0.988 1.876 0.293 0.835 0.020 0.366 2.509 0.049 3976 chr19 13179260 13207389 + 0 NA intron (NM_002501, intron 8 of 9) intron (NM_002501, intron 8 of 9) 20650 NM_005583 4066 Hs.46446 NM_005583 ENSG00000104903 LYL1 bHLHa18 LYL1, basic helix-loop-helix family member protein-coding 2.396 0.714 4.315 0.256 0.815 0.460 1.430 0.300 0.120 0.272 0.158 0.475 0.786 0.499 0.051 1.075 1.806 0.418 0.846 1.850 2.047 2.362 0.655 0.431 0.566 1.340 1.938 1.133 1.124 1.144 0.865 0.418 0.420 0.906 0.997 0.708 1.340 1.380 0.759 1.950 0.233 0.303 0.245 1.430 0.475 0.772 0.461 0.084 0.260 5160 chr21 45540509 45558041 + 0 NA intron (NM_005049, intron 20 of 20) intron (NM_005049, intron 20 of 20) -4219 NR_135220 8209 Hs.413482 NM_004649 ENSG00000160221 C21orf33 ES1|GT335|HES1|KNPH|KNPI chromosome 21 open reading frame 33 protein-coding nan 0.894 4.466 1.010 0.833 0.347 0.913 0.353 0.161 0.366 0.183 0.631 2.350 0.732 0.078 1.285 1.453 0.847 1.462 1.424 1.341 nan 0.423 1.800 1.891 1.088 nan 1.686 2.430 1.856 2.049 0.868 1.369 0.979 0.943 0.755 1.376 1.484 0.770 0.515 0.717 0.235 0.314 0.913 0.631 0.474 0.935 0.317 0.541 7447 chr7 115337269 115374997 + 0 NA Intergenic Intergenic 252234 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding nan 0.720 0.885 0.484 0.529 0.242 0.906 0.197 0.123 0.433 0.441 0.638 0.947 0.095 0.171 0.436 0.316 0.517 0.622 0.301 0.413 0.186 0.113 0.301 0.265 0.641 0.754 0.907 1.469 0.453 0.213 0.263 0.556 6.987 9.532 0.514 1.250 1.033 0.598 0.050 0.532 2.815 0.238 0.906 0.638 0.057 0.430 0.168 0.140 5179 chr22 18110079 18123525 + 0 NA Intergenic L2b|LINE|L2 -4548 NM_001270735 23786 Hs.631672 NM_015367 ENSG00000099968 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2 like 13 protein-coding 3.106 nan 2.133 1.505 2.408 1.336 1.843 2.133 0.269 1.209 0.554 2.184 3.756 1.802 0.087 2.734 2.486 3.919 7.585 2.513 2.482 3.491 1.767 9.978 10.571 3.260 4.124 3.097 4.686 4.580 4.199 1.521 2.480 3.286 5.094 2.626 2.877 3.355 2.088 0.802 1.191 0.406 0.773 1.843 2.184 0.837 1.501 0.641 0.865 4044 chr19 38418332 38459930 + 0 NA intron (NM_015073, intron 1 of 21) AluJb|SINE|Alu 41270 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 1.285 1.155 4.185 1.478 0.553 0.258 0.557 0.207 0.123 0.402 0.270 0.574 2.554 0.643 0.130 0.683 0.927 2.418 4.964 0.877 0.901 2.067 0.581 2.105 2.188 0.908 1.499 1.687 1.938 nan 0.822 0.640 0.696 0.680 0.660 0.447 0.997 1.253 0.831 1.090 0.960 0.140 0.485 0.557 0.574 0.272 0.276 0.680 0.278 7102 chr6 168770303 168795137 + 0 NA Intergenic Intergenic -59111 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 0.649 nan 2.300 2.952 0.568 0.297 0.556 0.054 0.013 0.529 0.261 7.533 1.554 0.035 0.078 0.269 0.233 0.214 0.331 7.554 7.950 3.265 1.458 0.144 0.171 0.059 0.108 4.713 4.924 nan 0.178 0.236 0.327 0.638 0.339 0.107 0.117 1.452 0.794 0.137 0.308 0.067 0.029 0.556 7.533 0.047 0.929 0.061 0.035 6184 chr5 14282996 14303788 + 0 NA intron (NM_007118, intron 6 of 56) intron (NM_007118, intron 6 of 56) 149581 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding nan nan nan 0.381 0.319 0.185 0.154 0.895 0.219 0.939 0.442 0.254 nan 0.177 0.162 0.389 0.435 0.331 0.521 0.937 1.007 0.318 0.147 0.216 0.206 nan 3.816 0.565 0.695 1.253 1.367 0.237 0.393 0.121 0.196 1.440 nan 2.810 1.555 0.054 0.192 0.032 0.103 0.154 0.254 0.251 0.150 0.047 1.911 249 chr1 40721977 40725633 + 0 NA promoter-TSS (NM_005857) promoter-TSS (NM_005857) 83 NM_005857 10269 Hs.132642 NM_005857 ENSG00000084073 ZMPSTE24 FACE-1|FACE1|HGPS|PRO1|STE24|Ste24p zinc metallopeptidase STE24 protein-coding 34.669 3.032 nan 20.708 3.962 1.563 89.235 3.915 0.528 2.575 1.350 6.634 6.818 5.034 0.194 5.497 4.911 6.387 9.409 9.573 9.779 6.499 2.609 12.867 14.153 4.948 nan nan 18.317 8.555 7.472 8.675 nan 2.778 3.059 6.444 6.769 8.109 4.158 2.537 1.851 0.396 22.209 89.235 6.634 1.364 1.332 3.276 1.932 858 chr1 213820706 213855044 + 0 NA Intergenic MLT1M|LTR|ERVL-MaLR -260217 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 1.073 1.282 1.203 3.103 1.104 0.675 0.254 0.100 0.142 0.963 0.554 3.085 nan 0.042 0.100 0.437 0.336 0.367 0.468 2.110 2.710 nan 0.727 0.788 0.826 0.289 nan 4.979 3.878 0.561 0.367 0.118 0.175 0.379 0.396 0.393 0.926 1.429 0.807 0.076 0.635 0.089 0.081 0.254 3.085 0.051 0.314 0.040 0.227 7676 chr8 53240382 53267403 + 0 NA intron (NM_014682, intron 2 of 25) intron (NM_014682, intron 2 of 25) 68547 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18, C2H2C-type zinc finger protein-coding 1.757 nan 0.780 3.253 3.213 1.597 0.493 0.103 0.035 1.454 0.576 2.993 2.011 0.028 0.118 0.576 0.717 0.455 0.747 2.672 2.861 4.669 2.418 0.823 0.884 1.360 nan 3.054 3.435 0.847 0.687 0.479 0.904 2.269 2.913 0.197 0.484 4.493 2.181 0.041 1.651 0.397 0.064 0.493 2.993 0.179 2.549 0.802 0.078 7620 chr8 23620057 23642924 + 0 NA Intergenic AluJb|SINE|Alu -67379 NM_001136271 137814 Hs.532654 NM_001136271 ENSG00000180053 NKX2-6 CSX2|CTHM|NKX2F|NKX4-2 NK2 homeobox 6 protein-coding nan 0.884 nan 0.046 0.172 0.098 0.280 0.056 0.085 0.068 0.075 0.047 0.085 0.067 0.106 0.357 0.246 0.166 0.248 nan 0.473 nan 0.098 0.053 0.056 0.099 0.159 0.266 0.258 4.257 3.932 0.163 0.166 0.098 0.147 1.287 4.642 nan nan 0.012 0.062 0.007 0.055 0.280 0.047 0.004 2.050 0.038 1.979 6801 chr6 50781507 50818926 + 0 NA intron (NM_003221, intron 3 of 6) intron (NM_003221, intron 3 of 6) 13777 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 0.760 1.403 nan 0.179 1.374 0.707 0.586 0.124 0.095 0.071 0.076 0.891 1.234 0.026 0.102 0.797 0.509 11.466 13.870 0.617 0.786 0.112 0.082 1.049 1.070 0.129 0.228 0.342 0.410 0.223 0.075 0.735 1.083 1.770 1.564 0.164 0.303 0.212 0.241 0.033 0.099 0.237 0.623 0.586 0.891 0.013 0.038 0.569 0.036 5355 chr3 35680689 35708150 + 0 NA intron (NM_016300, intron 1 of 19) intron (NM_016300, intron 1 of 19) 10570 NM_016300 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 0.800 1.478 0.764 0.143 0.161 0.123 0.153 0.098 0.035 0.080 0.100 0.048 0.947 0.027 0.085 0.371 0.332 0.181 0.257 0.726 0.612 0.136 0.071 0.283 0.301 4.065 nan 0.712 0.574 0.739 0.451 0.144 0.258 0.047 0.047 0.402 1.105 0.587 0.462 0.292 0.084 0.007 0.211 0.153 0.048 0.070 0.540 0.086 0.238 5057 chr21 10551347 10556361 + 0 NA Intergenic Intergenic 437089 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 1.713 1.562 nan 0.175 0.514 0.191 0.180 0.089 0.098 0.080 0.149 0.024 0.436 0.032 0.307 0.546 0.473 0.354 0.508 0.433 0.745 0.284 0.144 0.277 0.197 0.669 0.752 0.093 0.083 12.049 9.596 0.205 0.473 0.094 0.187 5.588 9.669 0.488 0.603 0.011 0.079 0.007 0.079 0.180 0.024 0.077 0.061 0.138 2.714 5234 chr22 29212455 29225478 + 0 NA Intergenic Intergenic -22406 NM_005080 7494 Hs.437638 NM_005080 ENSG00000100219 XBP1 TREB-5|TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding nan 1.753 1.419 0.966 5.582 2.826 0.394 0.177 0.161 0.653 0.267 2.718 1.158 0.100 0.092 0.563 0.697 0.542 nan 1.433 1.263 4.114 1.248 1.808 1.993 0.556 nan 5.544 5.407 0.669 0.350 0.325 0.644 1.522 1.969 0.332 nan 4.231 1.752 1.618 0.498 0.445 0.891 0.394 2.718 0.082 1.894 0.182 0.152 5884 chr4 47074098 47093017 + 0 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 50262 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 0.934 nan nan 0.112 0.180 0.094 0.087 0.075 0.047 0.239 0.190 0.070 0.153 0.023 0.092 0.438 0.346 0.171 0.249 0.137 0.179 0.132 0.093 0.236 0.239 1.382 1.529 0.179 0.208 2.310 2.749 0.125 0.227 0.035 0.083 1.971 5.595 0.385 0.383 0.015 0.047 0.010 0.084 0.087 0.070 0.257 0.054 0.031 1.959 6622 chr6 14765723 14827104 + 0 NA Intergenic Intergenic -449793 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 1.399 nan 1.115 0.773 0.537 0.309 1.127 0.250 0.094 0.133 0.105 0.898 0.353 0.062 0.077 0.508 0.538 1.706 2.145 0.811 0.745 0.790 0.319 0.340 0.322 0.645 0.878 0.596 0.594 0.843 0.613 0.444 0.650 0.703 1.083 0.750 3.320 0.655 0.525 0.158 0.352 0.144 0.207 1.127 0.898 0.175 0.042 0.251 0.865 4748 chr2 232326703 232335772 + 0 NA Intergenic Intergenic -2032 NM_005381 4691 Hs.79110 NM_005381 ENSG00000115053 NCL C23 nucleolin protein-coding 4.325 nan 3.849 3.722 3.173 1.610 2.576 0.777 0.143 1.478 0.519 3.157 5.526 3.104 0.134 5.406 5.348 3.964 5.314 4.710 4.291 4.241 2.249 8.386 8.131 2.685 3.649 8.474 nan 6.828 9.236 3.488 6.070 2.983 2.733 7.250 6.347 1.840 1.123 2.343 1.674 0.440 1.194 2.576 3.157 0.652 1.645 1.646 1.965 1243 chr10 124891741 124916470 + 0 NA Intergenic Intergenic -3533 NM_005519 3167 Hs.444756 NM_005519 ENSG00000188816 HMX2 H6L|Nkx5-2 H6 family homeobox 2 protein-coding nan 0.959 0.777 0.700 3.178 1.653 0.714 0.629 0.137 0.282 0.146 2.029 1.916 0.981 0.088 10.109 16.917 7.332 9.026 1.446 1.118 2.516 1.065 0.805 0.862 0.730 1.033 1.105 1.399 0.717 0.746 5.543 12.880 0.381 0.541 0.363 0.690 0.587 0.338 0.546 0.391 0.084 0.421 0.714 2.029 0.181 0.456 4.261 0.199 2564 chr14 37252542 37278936 + 0 NA intron (NM_030631, intron 3 of 9) L2c|LINE|L2 138966 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 1.376 0.869 0.937 1.241 1.492 0.832 0.213 0.167 0.085 0.434 0.351 0.635 6.923 0.054 0.114 0.220 0.163 0.176 0.266 2.622 2.828 2.384 0.823 0.271 0.275 0.349 0.488 2.454 2.816 0.576 0.233 0.448 0.445 4.916 4.286 0.150 0.194 0.696 0.606 5.052 1.975 1.651 0.081 0.213 0.635 0.110 0.220 0.506 0.089 997 chr10 3815281 3831058 + 0 NA intron (NR_027653, intron 2 of 3) L3|LINE|CR1 4304 NM_001300 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 1.558 2.569 2.580 3.025 3.677 1.929 2.982 5.317 0.521 1.888 0.723 4.030 5.134 7.452 0.131 2.645 3.320 4.005 7.549 3.820 2.922 8.652 8.772 5.238 5.223 1.715 2.011 2.695 5.775 1.522 2.316 0.838 1.723 2.858 3.032 3.075 3.173 1.869 1.102 0.500 2.233 0.445 0.924 2.982 4.030 0.331 1.165 0.458 1.096 3394 chr17 38247445 38281501 + 0 NA Intergenic Intergenic -7495 NM_021724 9572 Hs.724 NM_021724 ENSG00000126368 NR1D1 EAR1|THRA1|THRAL|ear-1|hRev nuclear receptor subfamily 1 group D member 1 protein-coding nan 2.352 1.826 1.143 3.284 1.878 1.938 3.419 0.630 1.289 0.689 2.290 3.591 1.311 0.105 1.819 2.074 1.624 2.592 nan 2.723 2.751 0.912 4.898 5.055 1.779 2.526 3.734 4.805 nan 2.763 1.370 1.972 0.898 1.040 1.899 3.833 1.681 0.986 1.504 2.588 0.284 1.080 1.938 2.290 0.642 1.538 0.865 1.342 4535 chr2 144183708 144200373 + 0 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 305141 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 0.883 nan 1.366 0.095 0.246 0.114 0.191 1.061 0.122 0.064 0.151 0.108 0.317 0.026 0.076 0.340 0.161 0.297 0.822 0.224 0.278 0.215 0.068 0.232 0.215 3.591 3.853 0.310 0.271 0.385 0.168 0.078 0.170 0.040 0.061 0.356 0.683 0.318 0.352 0.029 0.016 0.017 0.137 0.191 0.108 0.024 0.018 0.065 0.106 44 chr1 6293412 6310299 + 0 NA Intergenic CpG -2397 NM_001024598 390992 Hs.532677 NM_001024598 ENSG00000173673 HES3 bHLHb43 hes family bHLH transcription factor 3 protein-coding 2.375 nan 1.457 0.202 1.306 0.719 0.984 0.615 0.153 0.632 0.361 0.784 4.320 1.104 0.101 1.140 1.601 1.147 1.522 2.762 2.584 1.917 0.734 1.760 1.712 1.400 nan nan 9.270 nan 1.688 1.299 1.807 0.938 1.206 1.821 2.273 1.036 0.605 2.374 0.939 0.181 0.420 0.984 0.784 0.534 0.661 0.381 0.553 2152 chr12 115100050 115144330 + 0 NA promoter-TSS (NM_005996) promoter-TSS (NM_005996) -221 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding nan nan 0.429 0.593 0.823 0.457 0.846 0.078 0.075 0.035 0.095 0.791 2.736 0.380 0.104 0.836 1.129 0.245 0.343 nan nan nan 0.050 21.399 21.768 0.117 0.210 nan nan 0.237 0.091 3.984 8.117 0.572 0.402 0.955 1.163 nan 0.326 7.512 1.104 0.130 0.274 0.846 0.791 0.011 0.598 3.286 0.447 5312 chr22 50326540 50333744 + 0 NA Intergenic Intergenic 17864 NM_001284317 79174 Hs.211282 NM_024324 ENSG00000184164 CRELD2 - cysteine rich with EGF like domains 2 protein-coding 1.225 0.879 nan 0.611 3.123 2.004 3.984 2.603 0.271 0.282 0.305 2.557 1.114 2.957 0.132 1.670 4.646 0.832 1.291 3.017 2.508 1.054 0.508 1.379 1.170 0.161 0.321 3.322 6.684 1.192 1.074 0.601 0.963 0.617 0.653 0.876 1.562 1.318 0.724 0.449 0.477 0.079 0.705 3.984 2.557 0.696 4.978 1.170 0.511 4690 chr2 208327532 208340732 + 0 NA Intergenic Intergenic -60484 NM_134442 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 0.985 nan 1.634 0.523 1.143 0.559 1.074 0.255 0.185 0.426 0.313 0.707 3.137 0.197 0.070 0.433 0.471 0.432 0.604 0.389 0.388 0.290 0.105 0.596 0.740 4.758 5.236 0.528 0.529 0.683 0.633 0.277 0.347 1.425 1.491 0.503 1.160 0.747 0.320 1.793 0.366 0.528 0.232 1.074 0.707 0.162 0.622 0.046 0.131 1096 chr10 34824946 34842827 + 0 NA intron (NM_001184785, intron 2 of 24) intron (NM_001184785, intron 2 of 24) 270367 NM_001184791 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.688 1.043 0.703 0.063 0.852 0.459 0.111 1.629 0.382 0.150 0.143 0.261 0.259 0.110 0.102 0.461 0.291 0.898 nan 0.331 0.355 0.979 0.528 8.350 8.616 0.440 0.630 0.675 0.549 0.192 0.074 0.267 0.554 0.305 0.288 0.267 0.473 0.408 0.361 0.056 0.048 0.107 0.142 0.111 0.261 0.044 0.051 0.232 0.145 5722 chr3 181402806 181486221 + 0 NA intron (NR_004053, intron 4 of 4) CpG 14801 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box 2 protein-coding 1.310 5.472 2.103 1.938 2.268 1.156 0.693 0.123 0.156 1.275 0.712 0.275 1.633 5.177 0.168 0.345 0.368 0.662 0.940 0.832 0.812 8.705 3.739 0.119 0.127 2.748 3.347 1.151 1.610 0.803 0.387 0.177 0.252 5.169 4.303 0.141 0.214 1.613 0.936 0.078 0.242 1.392 1.732 0.693 0.275 0.076 0.293 0.045 0.043 6360 chr5 90932525 90941415 + 0 NA Intergenic Intergenic -257780 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding nan 5.093 0.566 0.079 0.247 0.251 0.188 0.160 0.127 0.035 0.047 0.291 0.061 0.121 0.235 0.133 1.886 0.437 0.288 0.407 0.333 0.121 0.162 0.180 0.446 0.472 0.303 0.333 0.547 0.140 0.079 0.186 0.148 0.182 0.242 nan 0.564 0.351 0.013 0.050 0.010 0.018 0.188 0.332 0.044 0.112 4666 chr2 201848721 201854115 + 0 NA intron (NM_001321621, intron 10 of 10) intron (NM_001321621, intron 10 of 10) -22994 NM_006190 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 0.823 nan 0.728 0.096 0.384 0.118 0.047 0.153 0.120 0.071 0.156 0.022 0.338 0.040 0.039 0.451 0.321 8.797 4.041 0.191 0.322 0.248 0.099 0.700 0.664 0.479 0.667 0.302 0.423 0.355 0.121 0.352 0.469 0.087 0.038 0.319 0.679 0.280 0.344 0.061 0.033 0.017 0.161 0.047 0.022 0.057 0.073 0.164 3039 chr16 4569517 4590381 + 0 NA intron (NM_001199056, intron 1 of 5) intron (NM_001199056, intron 1 of 5) 8522 NM_001199054 29965 Hs.654653 NM_013399 ENSG00000089486 CDIP1 C16orf5|CDIP|I1|LITAFL cell death inducing p53 target 1 protein-coding 2.065 nan 1.840 0.682 0.256 0.130 0.675 0.218 0.127 0.346 0.249 0.528 1.964 0.343 0.072 0.659 0.858 0.292 0.504 1.333 1.018 nan 1.173 0.997 1.006 1.860 nan 0.958 1.210 2.206 2.404 0.210 0.430 1.104 1.141 1.253 2.268 1.417 0.786 2.310 0.869 0.187 0.490 0.675 0.528 1.272 0.480 0.151 0.564 915 chr1 231661474 231665542 + 0 NA promoter-TSS (NM_005999) promoter-TSS (NM_005999) -891 NR_028395 100303453 Hs.13318 NR_028393 ENSG00000270106 TSNAX-DISC1 - TSNAX-DISC1 readthrough (NMD candidate) ncRNA 4.717 3.641 4.000 7.351 5.791 2.730 4.160 3.090 0.239 3.262 1.684 3.166 6.622 2.529 0.130 6.032 6.047 10.801 13.228 8.200 9.048 9.369 7.060 10.509 12.391 3.740 5.017 nan 10.162 5.603 4.983 3.797 3.947 4.522 4.430 5.779 5.764 nan 1.893 2.540 1.377 0.681 1.894 4.160 3.166 0.658 1.617 1.047 1.816 6492 chr5 146045577 146055316 + 0 NA intron (NM_181675, intron 5 of 9) MER113|DNA|hAT-Charlie -154770 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|PGR7 G protein-coupled receptor 151 protein-coding nan 0.950 0.694 0.148 0.422 0.271 0.936 0.068 0.100 0.203 0.245 1.064 0.811 0.068 0.092 0.760 0.457 0.558 0.647 0.697 0.687 3.022 1.325 0.052 0.051 4.849 4.894 0.609 0.506 0.681 0.512 0.106 0.136 0.820 1.189 0.257 0.602 1.099 0.680 0.499 0.704 0.225 0.025 0.936 1.064 0.488 0.324 0.020 0.141 4607 chr2 176030181 176036036 + 0 NA promoter-TSS (NR_045772) promoter-TSS (NR_045772) -174 NM_001880 1386 Hs.592510 NM_001880 ENSG00000115966 ATF2 CRE-BP1|CREB-2|CREB2|HB16|TREB7 activating transcription factor 2 protein-coding 4.405 2.648 2.805 2.952 3.838 2.132 2.334 2.349 0.193 1.197 0.851 2.546 9.572 2.347 0.112 2.368 3.404 4.250 5.048 4.789 4.218 3.870 1.908 8.918 9.015 3.421 3.969 9.601 18.325 5.628 5.627 2.016 4.183 2.100 2.121 6.141 5.876 1.563 0.806 2.855 2.003 0.409 1.666 2.334 2.546 0.761 0.771 1.538 2.131 561 chr1 154703010 154725541 + 0 NA intron (NM_001204087, intron 3 of 8) intron (NM_001204087, intron 3 of 8) -113819 NM_001025107 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA specific protein-coding nan nan 2.349 0.284 1.009 0.647 2.253 0.099 0.079 0.389 0.192 0.262 4.004 0.055 0.099 0.680 0.966 0.378 0.662 2.265 nan 2.277 0.658 0.206 0.191 0.541 0.968 2.967 4.058 0.893 0.708 0.889 1.150 0.452 0.750 0.511 0.830 0.996 0.783 1.087 2.428 0.076 0.103 2.253 0.262 0.233 0.413 0.215 0.083 6707 chr6 31761112 31765596 + 0 NA 5' UTR (NM_006295, exon 1 of 30).5 5' UTR (NM_006295, exon 1 of 30).5 358 NM_006295 7407 Hs.520026 NM_006295 ENSG00000204394 VARS G7A|VARS1|VARS2 valyl-tRNA synthetase protein-coding nan 2.411 nan 3.956 3.627 2.142 10.969 3.497 0.600 2.620 1.049 7.747 4.226 5.462 0.235 8.079 6.762 5.083 nan nan 7.586 6.937 4.096 15.023 15.562 4.065 6.098 10.203 12.825 7.663 7.125 4.505 7.255 6.907 7.560 5.759 7.542 4.515 2.141 2.050 3.895 1.606 1.910 10.969 7.747 2.759 3.152 1.104 3.263 5582 chr3 141090775 141134139 + 0 NA intron (NM_001080412, intron 5 of 7) intron (NM_001080412, intron 5 of 7) 69402 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 1.901 nan nan 0.662 2.114 1.124 1.176 2.000 0.204 1.928 1.223 1.617 0.554 0.242 0.082 2.828 3.973 1.939 2.707 0.598 0.649 nan 2.837 0.630 0.575 1.081 nan 0.763 nan nan 1.250 2.160 2.780 1.677 1.760 1.335 3.393 2.480 1.481 0.209 1.520 0.396 0.966 1.176 1.617 0.083 0.986 1.955 0.812 8003 chr8 145686766 145693230 + 0 NA intron (NM_138496, intron 1 of 4) intron (NM_138496, intron 1 of 4) 420 NM_138496 50626 Hs.459379 NM_032687 ENSG00000187954 CYHR1 CHRP cysteine and histidine rich 1 protein-coding 3.374 1.851 nan 4.337 2.859 1.766 1.912 1.241 0.150 0.871 0.231 5.626 12.305 1.559 0.079 2.147 2.967 3.237 4.619 nan 5.929 nan 1.099 6.750 6.155 1.679 2.506 2.897 4.062 1.976 1.743 2.465 3.679 1.902 1.859 1.812 2.694 1.429 0.586 2.772 4.818 0.380 1.035 1.912 5.626 0.972 2.850 1.522 0.810 5169 chr21 46150727 46166635 + 0 NA Intergenic Intergenic -27186 NM_001272037 54084 Hs.660703 NM_144991 ENSG00000175894 TSPEAR C21orf29|DFNB98|TSP-EAR thrombospondin type laminin G domain and EAR repeats protein-coding nan 1.014 2.026 0.072 0.541 0.333 0.305 0.061 0.081 0.118 0.092 0.202 0.663 0.027 0.066 0.337 0.194 0.231 0.199 0.400 0.450 nan 0.301 0.128 0.150 0.156 nan 0.299 0.400 1.050 0.920 0.164 0.159 1.322 0.995 0.396 0.918 3.690 1.854 0.063 0.206 0.174 0.049 0.305 0.202 0.159 2.869 0.038 0.156 7765 chr8 80864322 80879893 + 0 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 70399 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 1.652 nan nan 3.266 3.127 1.696 1.192 0.505 0.072 0.906 0.479 2.397 1.960 1.246 0.086 0.479 0.412 0.341 0.662 2.243 1.959 5.288 2.025 0.293 0.291 1.579 1.826 nan 2.452 1.626 1.195 0.297 0.546 3.596 5.612 0.881 2.156 2.621 1.557 0.194 0.162 1.162 0.318 1.192 2.397 0.352 0.711 0.126 0.436 1569 chr11 92058997 92066017 + 0 NA Intergenic MSTB1|LTR|ERVL-MaLR -22755 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 0.719 nan 0.548 0.255 0.275 0.092 0.147 0.396 0.152 0.095 0.089 0.743 0.263 0.093 11.168 10.334 2.988 nan 0.735 0.757 0.176 0.103 3.652 3.687 1.114 1.255 1.105 0.909 0.464 0.384 1.756 2.822 1.678 1.731 0.313 nan 1.018 0.777 0.126 0.127 0.392 0.067 0.147 0.089 0.029 0.188 1.244 0.214 4142 chr19 50594190 50643178 + 0 NA Intergenic AluSx|SINE|Alu 2413 NR_024228 100169958 Hs.723094 NR_024228 SNAR-A8 - small ILF3/NF90-associated RNA A8 snRNA 1.811 1.573 1.669 0.220 1.257 0.636 0.374 0.183 0.315 0.233 0.292 0.163 0.510 12.447 0.939 0.488 0.328 0.278 0.341 0.649 0.915 1.659 0.444 0.712 0.677 0.499 0.894 0.665 0.691 1.240 0.421 0.369 0.523 0.226 0.447 0.628 1.335 0.773 0.833 0.089 0.166 0.113 0.087 0.374 0.163 0.152 0.356 0.095 0.270 156 chr1 27012315 27033755 + 0 NA exon (NM_006015, exon 1 of 20) exon (NM_006015, exon 1 of 20) 513 NM_139135 8289 Hs.468972 NM_006015 ENSG00000117713 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT-rich interaction domain 1A protein-coding 4.901 2.925 nan 5.119 3.381 1.845 2.943 1.867 0.174 1.334 0.605 1.808 6.220 5.596 0.183 3.588 3.670 3.916 5.437 7.542 6.641 3.701 1.413 9.529 9.819 4.246 5.541 4.273 6.271 4.566 5.172 3.061 5.470 2.805 2.700 4.868 5.952 2.047 1.175 3.189 3.723 0.609 2.076 2.943 1.808 1.152 1.368 2.825 2.155 3993 chr19 18153090 18161380 + 0 NA Intergenic L2a|LINE|L2 38258 NM_001286826 27106 Hs.515249 NM_015683 ENSG00000105643 ARRDC2 CLONE24945|PP2703 arrestin domain containing 2 protein-coding 4.587 1.650 2.449 0.464 0.411 0.251 0.298 0.272 0.370 0.209 0.272 0.231 0.521 0.104 0.106 0.264 0.188 0.308 0.772 0.850 0.832 0.674 0.241 0.230 0.198 3.286 4.436 2.987 4.089 8.250 7.998 0.250 0.209 1.011 1.728 4.071 9.341 2.036 1.073 0.448 0.278 0.324 0.095 0.298 0.231 2.035 1.007 0.060 4.688 1896 chr12 31158765 31164547 + 0 NA Intergenic Intergenic -65123 NM_004399 1663 Hs.443960 NM_004399 ENSG00000013573 DDX11 CHL1|CHLR1|KRG2|WABS DEAD/H-box helicase 11 protein-coding 2.572 nan 3.563 0.213 0.211 0.166 0.072 0.066 0.056 0.162 0.074 0.097 0.358 0.044 0.091 0.635 0.969 0.295 0.486 0.854 0.938 0.847 0.325 0.537 0.670 0.533 0.900 0.425 0.886 10.766 13.866 0.285 0.271 2.907 2.678 0.889 1.830 0.547 0.515 0.067 0.134 0.686 0.122 0.072 0.097 1.085 0.389 0.035 0.597 196 chr1 33633627 33652355 + 0 NA promoter-TSS (NM_001330483) promoter-TSS (NM_001330483) -840 NM_001330483 55223 Hs.656006 NM_018207 ENSG00000116525 TRIM62 DEAR1 tripartite motif containing 62 protein-coding 2.316 nan 5.032 1.121 0.520 0.308 0.402 0.183 0.112 0.318 0.192 0.810 2.134 0.285 0.099 0.724 0.987 0.529 0.549 1.892 1.582 nan 0.245 0.896 0.971 1.236 1.604 1.480 2.155 nan 2.595 0.479 0.794 0.241 0.206 1.262 2.332 1.280 nan 0.459 0.752 0.025 0.831 0.402 0.810 0.280 1.002 0.420 0.908 1169 chr10 83633907 83645254 + 0 NA intron (NM_001165973, intron 1 of 10) intron (NM_001165973, intron 1 of 10) 2137 NM_001165973 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 0.539 0.710 0.696 0.047 0.195 0.056 0.022 0.047 0.097 0.073 0.053 1.537 0.067 0.081 0.283 0.235 5.785 3.895 0.092 0.163 0.150 0.116 0.081 0.073 2.130 2.534 0.502 0.771 1.606 1.879 0.085 0.133 0.033 0.053 0.519 0.982 0.080 0.159 0.005 0.028 0.015 0.035 0.022 0.053 0.197 0.017 0.035 0.186 118 chr1 19032360 19059398 + 0 NA intron (NM_002584, intron 7 of 7) intron (NM_002584, intron 7 of 7) 88379 NM_002584 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 0.847 0.740 nan 0.072 0.241 0.106 0.081 0.086 0.060 0.058 0.076 0.053 0.343 0.098 0.084 0.205 0.181 0.110 0.123 0.338 0.423 0.080 0.048 0.244 nan 0.151 nan 0.147 0.168 nan 0.424 0.183 0.239 0.037 0.063 1.477 5.463 0.272 0.310 0.039 0.141 0.007 0.041 0.081 0.053 0.266 0.034 0.022 2.117 3816 chr18 52946803 52961028 + 0 NA intron (NM_001243228, intron 8 of 19) intron (NM_001243228, intron 8 of 19) 15937 NM_001243236 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 1.037 0.863 0.143 0.438 0.214 0.287 0.478 0.057 0.198 0.214 0.461 0.289 0.186 0.082 0.437 0.430 0.321 0.672 1.171 1.365 0.694 0.373 0.573 0.490 1.174 1.344 0.625 0.521 1.577 1.030 0.190 0.330 0.617 0.934 0.404 0.657 nan 1.895 0.087 0.176 0.067 0.261 0.287 0.461 0.230 0.107 0.052 0.155 2173 chr12 119788606 119852048 + 0 NA intron (NM_178499, intron 1 of 13) L2b|LINE|L2 47810 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding nan nan 0.578 0.067 0.695 0.357 0.448 0.057 0.082 0.263 0.251 2.007 5.852 0.062 0.103 0.346 0.318 0.179 0.357 nan nan nan 0.807 0.094 0.106 1.166 1.428 nan nan 0.576 0.245 0.311 0.520 0.728 0.618 0.390 0.799 nan 1.273 1.563 1.491 0.170 0.261 0.448 2.007 0.075 0.206 0.213 0.193 8014 chr9 2228243 2244466 + 0 NA Intergenic Intergenic 77898 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 1.137 2.227 1.693 1.048 1.254 0.675 0.979 0.325 0.150 1.371 0.661 1.877 4.950 0.081 0.069 0.406 0.348 0.701 1.190 3.334 3.154 3.977 2.156 0.550 0.699 1.677 2.255 2.201 3.194 1.611 2.012 0.724 1.123 1.462 0.996 0.864 nan 2.600 1.682 1.890 3.316 0.195 0.250 0.979 1.877 0.898 0.598 0.583 0.139 6501 chr5 147327750 147353870 + 0 NA Intergenic Intergenic -54709 NM_206966 389336 Hs.660038 NM_206966 ENSG00000178776 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding nan 0.724 0.580 0.106 0.331 0.129 0.088 0.106 0.061 0.072 0.113 0.105 0.478 0.039 0.109 0.225 0.140 12.086 11.149 0.203 0.243 0.252 0.117 0.297 0.293 0.308 0.432 1.204 1.430 0.455 0.184 0.291 0.370 0.226 0.313 0.306 0.963 0.305 0.384 0.017 0.079 0.049 0.037 0.088 0.105 0.037 0.074 0.121 0.176 7888 chr8 116430723 116446246 + 0 NA intron (NM_001330599, intron 4 of 5) intron (NM_001330599, intron 4 of 5) 241755 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding nan nan 1.050 0.089 0.252 0.126 0.024 1.124 0.104 0.060 0.073 0.075 0.435 0.042 0.084 0.235 0.145 0.157 0.342 0.365 0.419 nan 0.090 0.676 nan 2.556 nan 0.223 0.284 0.557 0.250 0.096 0.205 2.958 3.480 0.394 0.702 0.545 0.478 0.032 0.097 0.612 0.041 0.024 0.075 0.012 0.052 0.044 0.162 4120 chr19 48406569 48420955 + 0 NA Intergenic L1P4|LINE|L1 -2546 NR_024220 100170225 Hs.717052 NR_024220 SNAR-C1 - small ILF3/NF90-associated RNA C1 snRNA 1.711 1.398 1.569 0.147 1.105 0.557 0.472 0.216 0.199 0.105 0.202 0.141 0.373 12.263 0.792 0.544 0.340 0.238 0.332 0.531 0.614 0.914 0.387 0.626 0.528 0.510 0.899 0.606 0.661 1.120 0.306 0.313 0.464 0.189 0.383 0.789 1.741 0.680 0.869 0.058 0.174 0.101 0.121 0.472 0.141 0.088 0.333 0.108 0.352 6119 chr5 294501 323843 + 0 NA intron (NM_001267558, intron 5 of 6) intron (NM_001267558, intron 5 of 6) 4881 NM_001242412 57491 Hs.50823 NM_020731 ENSG00000063438 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 0.555 1.806 1.810 1.200 2.501 1.177 1.695 0.407 0.195 0.970 0.796 7.967 3.283 0.206 0.110 0.973 1.535 0.511 nan 8.160 7.159 2.638 0.822 0.778 0.888 0.434 0.856 nan 8.199 nan 0.502 0.720 1.158 0.258 0.227 0.147 0.218 1.946 nan 3.784 2.630 0.042 0.079 1.695 7.967 0.292 0.490 0.638 0.071 2450 chr13 111765779 111776279 + 0 NA intron (NM_001113512, intron 1 of 17) intron (NM_001113512, intron 1 of 17) -3004 NR_046667 100874238 Hs.569218 NR_046667 ENSG00000235875 ARHGEF7-AS2 - ARHGEF7 antisense RNA 2 ncRNA 2.136 nan 3.346 1.851 1.312 0.823 3.015 0.203 0.061 0.446 0.303 5.649 2.670 0.145 0.088 0.600 0.392 2.095 1.486 5.933 5.100 1.103 0.409 0.205 0.284 0.048 0.067 4.708 6.312 0.398 0.247 0.930 1.566 0.471 0.584 0.148 0.212 0.659 0.400 1.288 1.839 0.173 1.978 3.015 5.649 0.351 1.639 0.370 0.065 1398 chr11 45101559 45114290 + 0 NA Intergenic Intergenic -7640 NR_046338 56981 Hs.178715 NM_020229 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding nan 1.508 0.983 0.451 1.703 0.882 2.148 1.062 0.202 0.665 0.199 0.236 1.008 0.076 0.106 1.540 2.977 0.190 0.320 0.784 0.666 9.714 2.914 0.143 0.168 1.191 1.577 0.734 0.541 2.658 2.153 0.381 0.483 0.472 0.476 0.362 nan 1.983 1.025 0.168 1.757 0.127 0.013 2.148 0.236 1.660 0.230 0.093 0.050 5112 chr21 36624609 36631440 + 0 NA Intergenic Intergenic -206429 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 1.395 1.074 1.845 1.384 1.368 0.667 0.749 3.477 0.282 0.416 0.216 3.034 4.811 0.031 0.067 0.423 0.417 0.879 2.795 3.122 2.613 3.018 0.845 0.338 0.502 0.145 0.231 6.776 5.570 1.038 0.792 0.116 0.265 0.356 0.258 0.201 0.277 nan 1.312 2.447 8.169 0.041 0.046 0.749 3.034 1.176 0.087 0.036 783 chr1 202774365 202781138 + 0 NA 5' UTR (NM_001314042, exon 1 of 28) 5' UTR (NM_001314042, exon 1 of 28) 847 NM_006618 10765 Hs.18891 NM_006618 ENSG00000117139 KDM5B CT31|JARID1B|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1 lysine demethylase 5B protein-coding 4.929 3.745 3.978 3.233 4.791 2.714 4.774 1.839 0.259 3.715 1.371 4.727 10.399 3.660 0.203 2.283 3.516 7.453 9.481 7.715 6.953 7.945 2.757 nan nan 3.357 4.098 6.631 9.033 3.647 3.802 1.467 3.951 1.819 2.067 3.395 5.114 2.822 1.621 4.713 8.519 0.339 1.751 4.774 4.727 0.927 3.292 1.932 1.048 49 chr1 7005386 7026286 + 0 NA intron (NM_015215, intron 3 of 22) intron (NM_015215, intron 3 of 22) 170452 NR_038934 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 1.144 nan 0.794 0.639 0.507 0.213 0.294 0.133 0.085 0.121 0.095 0.224 2.471 0.161 0.112 0.229 0.190 0.270 0.351 0.972 0.883 0.264 0.072 0.289 0.272 0.267 nan nan 3.447 nan 0.401 0.918 1.017 0.073 0.089 2.021 6.319 0.839 0.589 1.759 2.328 0.018 0.174 0.294 0.224 0.149 0.286 0.352 0.533 4398 chr2 70309708 70323281 + 0 NA TTS (NM_006196) TTS (NM_006196) 1909 NM_006196 5093 Hs.2853 NM_006196 ENSG00000169564 PCBP1 HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X poly(rC) binding protein 1 protein-coding nan nan 5.746 7.506 10.045 6.002 6.203 1.921 0.213 3.633 1.576 7.268 9.262 3.443 0.194 8.457 6.869 6.836 9.393 11.539 12.850 8.657 7.810 12.374 13.365 5.545 6.337 10.557 13.342 7.654 6.809 7.088 9.233 4.593 5.363 8.705 7.048 nan 1.232 6.305 6.585 1.085 2.767 6.203 7.268 2.047 3.353 3.647 2.889 2201 chr12 125216534 125256983 + 0 NA Intergenic Intergenic 111761 NM_005505 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 1.639 1.723 1.625 0.219 0.745 0.384 0.850 0.579 0.195 0.248 0.210 0.565 2.004 0.426 0.133 1.442 2.156 0.462 0.932 1.128 1.168 nan 0.344 0.425 0.475 2.682 3.220 0.829 1.170 4.630 3.781 0.761 0.916 0.548 0.833 1.262 3.469 1.533 0.952 1.258 1.276 0.249 0.099 0.850 0.565 1.063 0.307 0.690 0.987 2680 chr14 76287703 76301845 + 0 NA intron (NM_015072, intron 28 of 31) Tigger2a|DNA|TcMar-Tigger 153591 NM_003239 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 1.864 0.789 1.837 0.697 1.596 0.717 0.245 2.939 0.253 0.462 0.296 0.466 0.339 0.088 0.107 0.281 0.251 0.408 0.632 0.494 0.561 3.043 0.894 0.399 0.402 0.605 0.932 2.316 nan 1.347 0.677 0.267 0.284 1.149 1.237 0.481 1.081 5.709 nan 0.207 0.157 0.140 0.107 0.245 0.466 0.200 0.856 0.062 0.218 2478 chr13 115044497 115048979 + 0 NA promoter-TSS (NM_080687) promoter-TSS (NM_080687) -321 NM_080687 65110 Hs.533855 NM_023011 ENSG00000169062 UPF3A HUPF3A|RENT3A|UPF3 UPF3 regulator of nonsense transcripts homolog A (yeast) protein-coding 5.556 6.111 6.993 11.102 6.355 3.642 11.293 2.805 0.686 2.061 1.211 8.618 14.801 4.960 0.189 13.216 12.916 6.588 9.856 11.155 10.647 11.892 5.516 8.592 9.050 1.529 1.929 9.894 13.565 9.459 9.986 6.318 10.815 10.754 12.180 10.035 7.843 1.632 0.843 11.802 12.229 2.354 6.678 11.293 8.618 2.141 4.330 4.281 2.344 7498 chr7 135741953 135761113 + 0 NA Intergenic Intergenic -89329 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding nan nan nan 0.264 0.777 0.403 0.174 0.414 0.092 0.236 0.136 0.068 0.331 0.085 0.183 0.544 0.603 0.403 0.245 0.373 0.426 nan 2.765 0.230 0.224 0.155 nan 0.773 0.932 nan 0.182 0.261 0.340 2.062 1.791 0.731 2.034 2.687 nan 0.247 0.163 0.451 0.095 0.174 0.068 0.045 0.584 0.042 0.303 2340 chr13 72175844 72199581 + 0 NA intron (NM_080759, intron 4 of 11) L2b|LINE|L2 253618 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding nan 1.230 0.863 0.171 2.508 1.047 1.924 0.057 0.068 0.487 0.271 0.704 0.613 0.018 0.064 0.712 0.645 0.203 0.391 1.591 1.819 nan 1.213 0.144 0.155 1.116 1.082 0.414 0.453 nan 2.155 0.271 0.501 1.280 2.433 0.890 nan 0.252 0.187 0.108 0.438 0.393 1.708 1.924 0.704 0.390 0.051 0.144 0.444 7851 chr8 103724116 103760650 + 0 NA Intergenic Intergenic -74253 NM_005655 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 1.705 nan nan 0.561 0.574 0.325 0.302 0.891 0.211 0.138 0.093 0.276 1.003 0.098 0.062 0.345 0.382 0.242 0.361 0.858 1.012 nan 0.485 0.629 0.643 0.592 nan 3.192 nan nan 0.817 0.359 0.429 0.317 0.415 0.687 nan 1.800 0.974 0.549 0.175 0.058 0.181 0.302 0.276 0.184 2.677 0.082 0.469 295 chr1 48986704 48997197 + 0 NA Intergenic MIRb|SINE|MIR -54070 NM_019073 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding nan 2.029 nan 0.921 6.765 3.614 0.667 0.093 0.138 3.002 0.795 3.991 11.126 0.041 0.109 0.300 0.509 0.178 0.244 3.934 3.333 1.660 0.505 0.172 0.182 0.387 nan nan 1.192 0.442 0.330 0.332 nan 3.115 3.582 0.930 3.671 3.033 1.743 2.857 0.885 0.935 1.835 0.667 3.991 0.389 1.082 0.095 0.532 541 chr1 151680877 151694405 + 0 NA intron (NM_001172649, intron 1 of 11) intron (NM_001172649, intron 1 of 11) 1151 NM_001172648 11189 Hs.26047 NM_007185 ENSG00000159409 CELF3 BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4 CUGBP, Elav-like family member 3 protein-coding nan nan 1.499 0.485 0.642 0.383 4.075 0.213 0.107 0.716 0.416 1.155 4.421 0.101 0.123 1.007 1.441 0.196 0.309 4.046 nan 2.334 1.114 0.338 0.400 1.384 2.149 2.756 4.403 3.051 2.862 1.497 2.054 1.091 0.821 4.338 9.366 1.601 1.380 1.026 1.940 0.148 0.244 4.075 1.155 0.900 1.352 1.850 3.850 897 chr1 226294995 226301506 + 0 NA Intergenic CpG 47822 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 4.887 nan 14.163 4.473 3.557 1.918 2.122 1.127 0.322 3.581 1.587 3.295 4.169 1.599 0.091 1.438 2.323 3.292 5.278 6.928 nan 5.294 1.755 5.393 5.011 2.006 2.504 6.083 9.635 3.130 3.722 0.674 1.162 2.479 1.744 3.520 6.002 1.816 1.193 2.597 0.914 0.568 0.366 2.122 3.295 0.238 2.981 0.501 1.864 7897 chr8 119906899 119912638 + 0 NA Intergenic Intergenic 54615 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding nan nan 1.604 0.325 0.328 0.328 0.068 0.176 0.028 0.273 0.212 0.113 0.772 0.094 0.218 0.215 0.311 0.422 0.427 0.575 nan 1.821 0.720 nan 0.578 nan 0.583 0.375 0.409 0.209 0.166 0.346 1.378 3.840 0.281 0.733 1.265 0.642 0.010 0.124 0.545 0.013 0.068 0.113 4.492 0.087 0.086 7231 chr7 29417186 29427963 + 0 NA intron (NM_001293069, intron 4 of 13) intron (NM_001293069, intron 4 of 13) -96754 NM_001293076 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 1.588 1.378 2.887 1.108 3.067 1.544 0.286 0.126 0.119 0.852 0.406 0.960 0.496 0.071 0.149 0.562 0.527 0.194 nan 0.374 0.467 4.452 2.356 0.671 0.787 0.126 0.305 0.591 0.869 0.341 0.147 0.356 0.571 1.753 3.584 0.427 nan 3.658 1.277 0.082 0.108 0.294 2.088 0.286 0.960 0.125 0.133 0.120 0.463 2584 chr14 50358515 50363332 + 0 NA exon (NM_001663, exon 2 of 2) exon (NM_001663, exon 2 of 2) 1187 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 9.724 4.826 6.486 7.390 5.752 3.437 6.106 4.005 0.605 2.549 1.172 6.193 12.814 4.377 0.281 5.507 4.563 8.307 11.563 10.075 9.413 7.924 4.231 13.981 13.867 4.059 5.112 8.314 12.513 14.029 14.591 4.707 8.085 8.192 8.500 5.381 6.364 nan 2.411 6.769 6.290 2.396 4.420 6.106 6.193 2.075 2.932 2.011 2.162 6473 chr5 139397480 139424083 + 0 NA intron (NM_013983, intron 1 of 10) intron (NM_013983, intron 1 of 10) 12103 NM_004883 9542 Hs.408515 NM_004883 ENSG00000158458 NRG2 DON1|HRG2|NTAK neuregulin 2 protein-coding 1.671 1.367 nan 0.112 0.671 0.464 0.226 0.137 0.103 0.054 0.070 0.103 0.753 0.563 0.120 1.112 1.644 1.022 1.440 0.439 0.463 0.184 0.104 0.462 0.453 0.176 0.303 0.210 0.320 2.364 2.243 1.344 2.659 0.099 0.126 2.476 6.445 0.234 0.292 0.077 0.094 0.014 0.045 0.226 0.103 0.502 0.371 1.626 2.337 4710 chr2 216971851 216983715 + 0 NA exon (NM_021141, exon 2 of 21) exon (NM_021141, exon 2 of 21) 3763 NM_021141 7520 Hs.388739 NM_021141 ENSG00000079246 XRCC5 KARP-1|KARP1|KU80|KUB2|Ku86|NFIV X-ray repair cross complementing 5 protein-coding nan 2.120 nan 2.825 3.559 1.689 2.686 1.712 0.095 1.336 0.668 2.988 5.654 2.195 0.103 5.181 4.041 4.784 6.777 4.813 5.412 4.515 2.861 8.494 9.866 3.891 4.810 6.626 nan 5.953 5.029 2.903 3.453 2.157 3.199 5.636 7.169 2.530 1.163 1.672 1.056 0.313 1.145 2.686 2.988 0.879 1.055 1.012 1.855 3642 chr18 3441763 3467179 + 0 NA intron (NM_173211, intron 1 of 2) intron (NM_173211, intron 1 of 2) 699 NM_173211 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 2.814 3.127 3.594 1.384 0.877 0.492 0.481 2.424 0.253 0.913 0.534 2.719 nan 7.241 0.249 0.861 1.181 4.163 7.484 5.326 4.332 nan 0.190 3.049 3.039 0.928 nan 4.064 5.636 nan 0.884 0.902 2.178 4.263 4.886 1.689 nan nan 1.473 3.700 2.031 0.810 1.713 0.481 2.719 0.436 1.225 1.133 1.245 6308 chr5 70066815 70078555 + 0 NA Intergenic Intergenic -123805 NM_021967 8293 Hs.726820 NM_021967 ENSG00000172058 SERF1A 4F5|FAM2A|H4F5|SERF1|SMAM1 small EDRK-rich factor 1A protein-coding 3.073 6.294 2.739 0.663 0.585 0.465 0.428 0.230 0.220 0.564 0.348 0.311 0.396 0.230 0.230 0.619 0.649 1.201 1.147 0.856 0.943 nan 1.367 0.986 0.886 1.600 nan 0.910 1.530 1.803 1.293 0.333 0.545 2.565 2.589 0.588 1.101 1.447 0.945 0.241 0.388 1.064 0.309 0.428 0.311 0.156 0.131 0.084 0.189 759 chr1 197236692 197257631 + 0 NA intron (NR_047564, intron 1 of 11) MLT1I|LTR|ERVL-MaLR 9827 NR_047564 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs 1, cell polarity complex component protein-coding 1.156 nan 1.362 0.412 1.444 0.708 0.381 0.199 0.153 1.415 0.847 0.276 0.892 0.088 0.130 0.428 0.431 0.348 0.513 1.715 1.678 0.190 0.098 0.362 0.406 1.812 nan 0.501 0.592 1.104 0.810 0.247 0.517 2.897 3.474 1.904 3.605 1.332 0.930 0.026 0.354 0.344 0.046 0.381 0.276 0.018 0.355 0.468 0.797 4268 chr2 26560336 26570693 + 0 NA intron (NM_153835, intron 1 of 11) intron (NM_153835, intron 1 of 11) 3196 NM_001321975 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 2.829 1.459 1.964 1.746 1.532 0.759 1.790 0.947 0.274 1.038 0.672 1.861 4.937 1.589 0.181 2.146 1.962 5.235 9.770 3.596 2.681 3.819 1.691 6.754 7.295 1.915 2.473 2.647 nan 3.224 3.752 1.370 2.542 0.900 1.309 3.077 3.198 1.677 1.063 1.331 1.977 0.137 1.186 1.790 1.861 0.740 0.812 0.735 0.869 7696 chr8 61669501 61724337 + 0 NA intron (NM_017780, intron 3 of 37) intron (NM_017780, intron 3 of 37) 43101 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 1.846 1.327 1.742 1.815 3.045 1.640 1.615 0.078 0.071 1.019 0.603 5.242 1.824 0.075 0.077 0.352 0.338 0.573 0.513 3.286 4.199 4.038 1.826 0.153 0.122 1.095 nan 2.535 2.555 nan 1.448 0.344 0.569 2.094 4.327 1.124 3.349 2.718 1.372 0.635 1.978 0.610 0.625 1.615 5.242 3.955 1.388 0.233 1.011 5111 chr21 36584164 36613480 + 0 NA Intergenic Intergenic -177227 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 0.774 0.714 1.158 0.482 1.340 0.509 0.415 0.993 0.137 0.272 0.102 2.510 2.158 0.037 0.051 1.048 1.304 0.924 1.751 2.713 2.320 3.329 0.932 1.019 1.039 0.146 0.277 4.022 3.645 0.608 0.294 0.276 0.450 0.127 0.165 0.156 0.213 nan 0.981 2.321 2.938 0.026 0.062 0.415 2.510 0.016 0.139 0.128 0.047 582 chr1 155930529 155959483 + 0 NA intron (NM_001162384, intron 1 of 21) intron (NM_001162384, intron 1 of 21) 2960 NM_004723 9181 Hs.743352 NM_004723 ENSG00000116584 ARHGEF2 GEF|GEF-H1|GEFH1|LFP40|P40 Rho/Rac guanine nucleotide exchange factor 2 protein-coding nan nan 2.132 1.657 2.006 1.042 2.591 2.114 0.272 1.673 0.736 3.940 15.846 0.863 0.112 3.321 4.930 2.769 2.724 6.565 nan 2.055 0.805 3.003 3.223 1.789 2.674 2.852 2.797 2.385 2.160 4.435 5.876 1.575 1.837 1.941 5.599 1.603 0.759 2.031 1.233 0.736 0.950 2.591 3.940 0.594 1.455 2.886 1.307 4868 chr20 18035932 18041097 + 0 NA promoter-TSS (NM_021220) promoter-TSS (NM_021220) 12 NM_021220 58495 Hs.661013 NM_021220 ENSG00000125850 OVOL2 EUROIMAGE566589|PPCD1|ZNF339 ovo like zinc finger 2 protein-coding 1.808 5.681 3.923 6.881 6.858 3.414 1.772 0.058 0.032 2.579 1.744 8.242 11.953 0.191 0.122 2.404 4.950 3.249 3.798 13.407 10.538 6.996 1.421 7.747 7.234 0.099 0.374 4.498 5.539 1.310 1.520 3.205 7.836 9.158 6.686 0.204 0.557 2.909 1.736 4.214 4.513 3.456 2.039 1.772 8.242 0.505 0.676 8.061 0.055 3325 chr17 20943530 20948458 + 0 NA exon (NM_015276, exon 1 of 13) exon (NM_015276, exon 1 of 13) 358 NM_015276 23326 Hs.462492 NM_015276 ENSG00000124422 USP22 USP3L ubiquitin specific peptidase 22 protein-coding nan nan nan 5.755 10.011 5.597 6.116 1.594 0.391 1.871 1.017 7.127 8.220 7.077 0.229 7.215 7.049 7.218 9.124 9.619 8.949 9.069 4.501 6.836 6.753 4.484 5.621 9.854 14.273 12.631 14.136 2.707 4.694 5.876 6.352 10.376 nan 2.278 1.055 4.146 3.988 1.218 2.527 6.116 7.127 1.751 6.248 1.392 3.949 4482 chr2 121704992 121722826 + 0 NA intron (NM_005270, intron 4 of 12) L2a|LINE|L2 159042 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 0.922 nan nan 0.059 0.186 0.091 0.395 0.148 0.054 0.080 0.097 0.060 0.542 0.061 0.087 0.412 0.496 0.353 0.424 0.370 0.445 0.237 0.117 0.588 0.497 0.454 0.737 1.470 1.166 0.618 0.601 0.307 0.386 0.072 0.082 0.610 1.048 0.549 0.393 3.632 0.190 0.027 0.044 0.395 0.060 0.158 0.025 0.051 0.331 3496 chr17 61588800 61609717 + 0 NA Intergenic Intergenic -1437 NM_001278920 81033 Hs.591177 NM_030779 ENSG00000173826 KCNH6 ERG-2|ERG2|HERG2|Kv11.2|hERG-2 potassium voltage-gated channel subfamily H member 6 protein-coding 1.438 nan 1.328 1.803 2.259 1.009 0.153 0.136 0.108 0.556 0.306 3.724 1.872 0.083 0.114 1.101 2.027 0.185 0.238 1.678 1.998 2.204 0.669 0.791 0.970 0.439 nan 4.755 5.601 2.036 1.718 0.726 0.787 0.877 0.550 1.241 3.924 1.340 0.936 1.049 1.874 0.163 4.125 0.153 3.724 0.649 0.384 0.945 0.784 5062 chr21 16372109 16379674 + 0 NA intron (NM_003489, intron 3 of 3) intron (NM_003489, intron 3 of 3) 61235 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 1.487 1.077 nan 0.476 3.585 2.048 0.646 0.019 0.021 1.941 1.051 0.016 0.346 0.073 0.076 0.936 1.048 0.780 0.906 0.747 0.929 5.607 2.052 0.111 0.137 0.147 0.204 0.346 0.386 3.224 2.882 0.744 1.240 6.187 7.553 0.964 2.626 4.076 1.686 0.014 0.023 1.332 0.649 0.646 0.016 0.955 0.776 3865 chr18 60796810 60830902 + 0 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 172757 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 0.830 0.797 1.813 2.213 1.703 0.796 0.431 0.227 0.071 0.606 0.260 1.593 5.463 0.045 0.066 2.158 2.517 2.415 2.209 2.155 1.994 2.810 0.823 9.049 nan 0.209 nan 5.022 4.505 0.469 0.293 2.574 3.780 1.136 1.849 0.141 0.183 5.175 2.814 1.873 2.426 0.322 0.572 0.431 1.593 0.302 1.570 3.699 0.051 3679 chr18 19758628 19774735 + 0 NA intron (NM_005257, intron 6 of 6) intron (NM_005257, intron 6 of 6) 17283 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 0.699 0.869 1.449 0.376 0.450 0.209 0.160 0.117 0.040 0.552 0.212 0.052 0.329 0.051 0.079 0.330 0.236 1.218 2.068 0.368 0.472 4.500 1.836 0.257 0.299 0.130 0.122 0.112 0.118 0.481 0.265 0.236 0.431 0.291 0.233 0.300 0.645 0.437 0.555 0.017 0.121 0.022 0.024 0.160 0.052 0.024 0.025 0.092 0.163 5336 chr3 18455902 18472899 + 0 NA intron (NM_001322874, intron 1 of 10) intron (NM_001322874, intron 1 of 10) 2429 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding nan 1.318 2.029 0.883 1.520 0.604 0.399 0.189 0.047 1.034 0.525 1.180 2.879 0.058 0.061 2.534 2.567 1.001 1.235 3.129 2.611 1.747 0.544 1.558 1.651 0.104 0.168 1.466 1.562 1.197 1.362 3.103 5.400 1.600 1.554 0.652 1.130 1.424 0.795 0.036 1.074 0.499 2.716 0.399 1.180 0.399 1.071 3.115 0.524 6326 chr5 72914440 72940755 + 0 NA intron (NM_001177693, intron 1 of 35) intron (NM_001177693, intron 1 of 35) 5614 NM_001080479 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 1.207 nan 1.111 0.327 0.898 0.437 0.322 0.489 0.129 0.274 0.113 0.469 1.053 0.554 0.144 0.239 0.157 0.937 1.225 0.677 0.711 nan 0.531 0.271 0.381 1.690 nan 0.714 0.771 3.455 3.504 0.265 0.421 1.218 1.687 0.901 2.021 0.998 0.648 0.047 0.545 0.289 0.329 0.322 0.469 0.136 0.248 0.082 0.435 4941 chr20 35847851 35905684 + 0 NA Intergenic L2a|LINE|L2 8544 NM_001184731 2691 Hs.37023 NM_021081 ENSG00000118702 GHRH GHRF|GRF|INN growth hormone releasing hormone protein-coding 1.146 1.852 1.080 1.647 3.689 1.886 2.585 0.225 0.153 0.226 0.159 0.765 2.565 0.111 0.103 0.828 1.194 0.296 0.434 3.169 nan 4.632 1.119 0.658 0.629 0.514 0.823 0.461 0.560 0.789 0.542 0.435 0.505 0.755 0.551 0.491 nan 0.746 0.469 1.071 0.767 0.222 1.395 2.585 0.765 0.313 0.244 0.073 0.226 50 chr1 7305508 7345852 + 0 NA intron (NM_015215, intron 5 of 22) MER33|DNA|hAT-Charlie 480296 NR_038934 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 0.955 nan 1.135 3.883 0.983 0.410 1.659 0.141 0.118 0.294 0.203 0.616 4.126 0.048 0.115 0.284 0.269 0.121 0.156 1.208 1.260 2.811 1.182 0.175 0.147 0.181 nan nan 6.405 nan 0.200 0.405 0.569 1.099 1.127 0.278 0.458 1.589 0.871 0.788 0.604 0.214 0.228 1.659 0.616 0.207 0.795 0.343 0.059 3543 chr17 72348381 72377091 + 0 NA promoter-TSS (NM_001331077) promoter-TSS (NM_001331077) -909 NM_181790 350383 Hs.574368 NM_181790 ENSG00000257008 GPR142 GPRg1b|PGR2 G protein-coupled receptor 142 protein-coding 2.335 1.178 2.541 0.666 1.051 0.427 0.837 0.080 0.079 0.136 0.098 0.683 2.971 0.061 0.087 0.749 0.969 0.229 0.283 3.510 3.174 0.549 0.140 0.076 0.079 nan 0.848 2.136 3.064 3.760 4.423 0.396 0.403 0.773 0.850 0.458 1.044 nan 0.691 1.186 0.843 0.178 0.279 0.837 0.683 0.586 0.472 0.098 0.117 6972 chr6 134286859 134305447 + 0 NA intron (NM_004865, intron 1 of 6) L1M5|LINE|L1 21852 NM_004865 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 1.143 0.918 1.527 0.408 0.349 0.112 0.358 0.537 0.069 0.093 0.092 0.277 0.549 0.257 0.109 1.818 1.460 5.372 3.515 0.971 1.025 nan 0.493 0.339 0.350 2.818 3.050 0.386 0.344 2.248 2.045 0.300 0.739 0.907 1.261 0.723 nan 0.596 0.456 0.045 0.347 0.133 0.116 0.358 0.277 0.109 0.108 0.271 0.416 645 chr1 167071477 167080421 + 0 NA intron (NM_001080426, intron 2 of 5) intron (NM_001080426, intron 2 of 5) 12622 NM_001080426 92235 Hs.632462 NM_001080426 ENSG00000198842 DUSP27 - dual specificity phosphatase 27 (putative) protein-coding 1.467 nan 4.351 0.119 0.248 0.179 3.526 0.162 0.073 0.384 0.232 0.093 1.244 0.048 0.072 0.595 0.511 0.382 0.667 0.563 nan 8.295 1.793 0.204 0.243 0.354 0.563 1.376 nan 0.327 0.237 1.109 1.780 5.014 6.996 0.947 2.119 0.501 0.447 0.072 0.486 2.056 0.232 3.526 0.093 0.467 0.137 1.717 0.619 2881 chr15 56533139 56548992 + 0 NA Intergenic Intergenic -5582 NM_022841 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 1.779 1.464 2.544 0.747 1.832 1.121 1.415 0.821 0.122 0.931 0.739 1.233 2.549 0.919 0.082 0.805 1.236 0.878 1.336 1.651 1.691 1.877 0.681 2.072 2.001 2.329 2.756 1.336 1.994 5.762 6.224 0.943 1.977 4.056 3.962 1.682 2.698 1.072 0.640 0.315 0.651 1.595 0.433 1.415 1.233 0.442 0.993 1.105 0.838 4723 chr2 219844386 219850284 + 0 NA intron (NM_017521, intron 2 of 2) MER91A|DNA|hAT-Tip100 3044 NM_017521 54738 Hs.234759 NM_017521 ENSG00000163497 FEV HSRNAFEV|PET-1 FEV, ETS transcription factor protein-coding nan 2.167 nan 0.773 1.687 0.722 3.971 0.052 0.044 0.375 0.152 1.089 2.471 0.767 0.076 1.064 1.241 0.152 0.167 1.872 1.228 1.939 0.352 0.165 0.193 1.052 1.220 0.958 nan 2.702 2.289 0.941 2.124 0.192 0.289 0.414 1.563 0.440 0.217 9.809 0.136 0.130 0.253 3.971 1.089 0.408 1.249 1.693 0.413 3474 chr17 56060511 56086739 + 0 NA Intergenic AluSx3|SINE|Alu -8000 NM_001330393 7716 Hs.463569 NM_007146 ENSG00000136451 VEZF1 DB1|ZNF161 vascular endothelial zinc finger 1 protein-coding 3.611 3.408 3.941 3.689 4.851 2.558 2.235 2.303 0.235 2.480 1.156 3.835 7.037 2.134 0.142 4.254 4.443 3.093 4.303 6.128 5.953 4.599 2.293 nan 7.686 3.072 3.755 nan nan 6.402 5.864 2.448 4.717 4.696 5.698 5.057 6.301 2.335 1.149 1.438 2.756 1.578 2.273 2.235 3.835 1.123 1.770 1.731 2.587 5106 chr21 35947589 35993124 + 0 NA intron (NM_004414, intron 1 of 3) L1M5|LINE|L1 15786 NM_001285389 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 0.945 0.891 1.125 1.237 0.719 0.415 1.395 0.211 0.089 0.544 0.423 1.456 6.364 0.064 0.081 0.670 0.621 0.785 1.483 3.828 3.974 3.013 0.923 0.512 0.479 0.297 0.538 2.873 2.579 0.582 0.438 0.354 0.535 1.879 2.016 0.329 0.556 nan 1.009 5.912 3.598 0.436 0.174 1.395 1.456 0.083 0.391 0.102 0.241 2494 chr14 24006113 24027274 + 0 NA intron (NM_033400, intron 1 of 9) intron (NM_033400, intron 1 of 9) 4165 NM_033400 85446 Hs.508937 NM_033400 ENSG00000136367 ZFHX2 ZFH-5|ZNF409 zinc finger homeobox 2 protein-coding nan 1.391 1.405 2.212 2.178 1.230 1.501 0.718 0.266 0.884 0.432 2.233 2.977 1.159 0.137 1.707 2.251 1.363 1.635 3.731 3.674 3.823 1.108 2.289 2.393 2.175 3.169 2.442 nan 2.869 2.635 1.759 2.640 2.071 2.120 0.843 2.236 2.980 1.411 1.093 1.848 0.453 0.906 1.501 2.233 0.715 2.890 1.617 0.538 3840 chr18 55709789 55790021 + 0 NA intron (NM_001144964, intron 1 of 30) AluSx|SINE|Alu 35447 NM_001144964 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding nan 1.302 1.963 0.448 1.304 0.680 0.602 0.149 0.084 0.119 0.115 0.656 1.356 0.185 0.076 1.732 1.790 4.206 8.057 1.236 1.162 3.152 0.930 3.221 3.288 0.468 0.726 0.924 1.084 1.151 1.267 1.310 1.853 1.759 2.142 1.173 3.125 nan 1.528 0.405 0.569 0.413 0.307 0.602 0.656 0.218 0.232 1.226 1.373 3338 chr17 27275278 27281249 + 0 NA 5' UTR (NM_001033561, exon 1 of 15) 5' UTR (NM_001033561, exon 1 of 15) 245 NM_001033561 57649 Hs.444173 NM_020889 ENSG00000109118 PHF12 PF1 PHD finger protein 12 protein-coding nan nan nan 3.153 8.360 4.398 4.407 3.539 0.242 1.834 1.021 6.149 15.383 8.357 0.244 7.510 6.804 6.690 9.489 7.864 7.196 6.772 3.081 10.187 10.830 4.605 5.367 9.144 14.165 13.666 11.888 6.113 8.838 3.539 4.579 5.101 7.250 2.551 1.178 6.861 6.584 1.152 4.243 4.407 6.149 2.768 2.856 5.139 3.889 5477 chr3 114606181 114623208 + 0 NA intron (NM_001164343, intron 3 of 11) MIRb|SINE|MIR 4775 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 1.385 nan 1.866 0.273 2.482 1.264 0.192 0.356 0.121 1.134 0.700 1.800 0.372 0.038 0.111 0.425 0.410 0.370 0.454 1.491 nan 4.835 2.486 1.124 1.056 nan 4.816 0.924 1.590 2.346 2.071 0.140 0.229 0.640 0.403 0.390 0.888 1.550 1.092 2.251 0.265 0.056 0.099 0.192 1.800 0.473 0.486 0.076 0.236 8389 chrX 53709307 53714226 + 0 NA intron (NM_031407, intron 2 of 83) intron (NM_031407, intron 2 of 83) 1908 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase protein-coding 5.852 3.932 2.770 4.614 8.129 4.673 2.902 2.287 0.167 2.682 1.004 4.448 12.117 5.235 0.131 3.456 3.218 7.940 9.080 11.806 9.928 8.209 4.851 18.935 19.501 4.000 5.026 9.270 17.412 13.536 14.575 5.391 8.503 5.017 5.573 11.616 9.038 3.748 1.834 2.858 3.030 0.828 2.679 2.902 4.448 1.274 5.012 2.452 2.582 7240 chr7 30632802 30638187 + 0 NA intron (NM_002047, intron 1 of 16) intron (NM_002047, intron 1 of 16) 985 NM_002047 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 7.797 4.532 6.108 5.292 4.550 2.229 4.011 5.639 0.238 4.001 1.880 8.008 9.516 9.784 0.301 10.111 10.664 5.068 6.997 9.324 nan 9.678 4.668 23.752 25.518 5.449 nan nan nan 5.714 6.975 5.053 8.321 8.672 9.442 5.753 9.421 3.477 1.989 3.658 4.572 1.181 4.679 4.011 8.008 1.404 3.618 3.043 2.292 2311 chr13 52351926 52397369 + 0 NA intron (NM_001031719, intron 1 of 7) intron (NM_001031719, intron 1 of 7) 3651 NM_001031719 79758 Hs.266728 NM_024705 ENSG00000102796 DHRS12 SDR40C1 dehydrogenase/reductase 12 protein-coding 1.579 nan nan 0.402 0.550 0.265 0.637 0.384 0.075 0.257 0.145 1.644 1.742 0.257 0.071 1.415 1.845 0.397 0.681 2.404 2.328 nan 0.611 0.867 0.912 0.767 1.036 1.083 1.509 2.454 2.683 0.755 1.099 0.869 0.849 2.047 nan 0.479 0.291 0.881 1.999 0.174 0.664 0.637 1.644 1.198 0.245 0.310 1.188 5002 chr20 52176964 52244595 + 0 NA Intergenic CpG -11143 NM_006526 7764 Hs.155040 NM_006526 ENSG00000171940 ZNF217 ZABC1 zinc finger protein 217 protein-coding 1.807 1.796 1.443 0.528 0.630 0.341 1.215 2.391 0.423 0.090 0.107 0.122 0.757 6.508 0.286 0.846 nan 1.235 3.255 0.942 0.957 0.306 0.133 0.775 0.793 1.194 1.515 0.835 1.155 1.815 1.536 0.741 1.257 0.085 0.107 1.616 2.607 0.314 0.366 0.712 0.915 0.048 0.837 1.215 0.122 0.295 0.148 0.536 0.682 7789 chr8 93063521 93084477 + 0 NA intron (NM_001198633, intron 1 of 10) intron (NM_001198633, intron 1 of 10) 1192 NM_004349 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 translocation partner 1 protein-coding nan 0.955 3.387 0.330 0.364 0.153 0.898 1.699 0.122 0.150 0.099 0.846 0.695 0.018 0.092 0.309 0.156 0.218 nan 1.363 1.333 1.154 0.400 0.188 0.198 1.046 1.328 1.316 1.334 3.346 3.028 0.179 0.235 0.451 0.304 1.012 2.808 0.420 0.369 0.218 0.190 0.154 0.501 0.898 0.846 0.237 0.276 0.061 1.409 4049 chr19 39137316 39163066 + 0 NA intron (NM_001322033, intron 1 of 20) intron (NM_001322033, intron 1 of 20) 11935 NM_004924 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 2.413 1.642 3.422 2.618 0.846 0.460 0.681 2.566 0.754 0.646 0.350 1.321 5.665 0.649 0.152 0.862 1.028 2.215 5.660 1.232 1.636 1.408 0.428 2.092 2.155 1.811 2.779 2.257 2.808 nan 2.389 1.118 1.916 1.155 1.901 1.487 3.231 1.609 1.022 0.769 0.384 0.391 0.535 0.681 1.321 0.550 1.135 0.704 1.230 5353 chr3 32440123 32456556 + 0 NA intron (NM_138410, intron 1 of 4) LTR16A1|LTR|ERVL 15176 NM_181472 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 1.345 3.690 4.509 0.565 0.853 0.420 0.263 0.215 0.108 0.822 0.536 0.457 2.113 0.401 0.101 1.233 1.342 0.726 1.268 0.772 0.712 1.031 0.277 0.501 0.674 0.698 nan 4.207 3.818 2.533 3.124 0.706 0.639 0.421 0.352 1.044 1.470 1.741 1.141 0.443 0.071 0.053 2.339 0.263 0.457 0.297 1.085 0.150 0.523 7137 chr7 4749869 4754564 + 0 NA intron (NM_001037165, intron 1 of 8) intron (NM_001037165, intron 1 of 8) 30286 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 1.374 2.136 0.917 1.072 0.621 0.478 1.112 0.623 0.317 0.200 0.230 0.944 nan 0.189 0.178 0.867 1.038 2.078 nan 1.115 0.945 nan 0.170 2.412 2.636 0.575 0.700 nan 6.198 0.314 0.126 0.575 0.626 0.107 0.128 0.236 0.560 0.709 0.382 1.736 0.718 0.062 0.099 1.112 0.944 0.042 5.604 0.684 0.106 8275 chr9 128639084 128683624 + 0 NA intron (NR_024123, intron 2 of 6) intron (NR_024123, intron 2 of 6) 150876 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding nan nan 1.003 1.430 1.421 0.702 0.388 0.371 0.102 1.049 0.766 0.693 nan 0.149 0.084 0.311 0.240 0.361 0.465 0.862 1.064 2.100 0.897 0.342 0.331 0.933 nan 1.692 2.354 2.581 1.862 0.164 0.230 2.362 3.012 1.241 2.101 nan 0.769 0.281 0.431 0.396 0.263 0.388 0.693 0.188 1.563 0.047 0.693 3711 chr18 30014882 30031150 + 0 NA intron (NM_022751, intron 1 of 5) intron (NM_022751, intron 1 of 5) 27431 NM_022751 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding nan 1.040 1.327 0.271 3.596 2.085 0.360 0.125 0.069 0.303 0.277 0.174 0.610 0.033 0.070 0.419 0.270 0.242 0.409 0.423 0.632 3.350 0.944 0.173 0.176 0.408 0.646 nan 0.885 0.568 0.317 0.248 0.584 7.144 10.874 0.628 1.507 1.310 1.312 0.072 0.229 2.397 0.127 0.360 0.174 0.220 0.097 0.535 0.978 5480 chr3 114979383 114992093 + 0 NA Intergenic Intergenic -119611 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 0.996 nan 0.661 0.132 0.512 0.152 1.526 0.152 0.090 0.273 0.214 0.113 0.421 0.051 0.104 0.376 0.244 0.213 0.258 0.352 nan 8.591 6.275 0.282 0.269 nan 0.947 0.255 0.252 0.631 0.269 0.106 0.098 0.099 0.188 0.404 0.825 0.772 0.731 0.113 0.161 0.022 0.056 1.526 0.113 0.023 0.810 0.023 0.187 688 chr1 180235767 180272281 + 0 NA Intergenic AluJr|SINE|Alu -10208 NR_037642 100527964 Hs.496545 NR_037642 ENSG00000230124 LHX4-AS1 - LHX4 antisense RNA 1 ncRNA nan nan 1.413 0.174 0.324 0.168 0.267 0.273 0.127 0.159 0.183 0.320 0.379 0.122 0.123 0.577 0.534 0.598 0.706 0.541 nan 0.335 0.180 nan 0.492 0.834 1.094 0.484 0.472 0.747 0.473 0.582 0.702 0.128 0.148 1.129 nan 0.797 0.606 0.052 0.258 0.015 0.141 0.267 0.320 0.072 0.056 0.114 1.199 1126 chr10 63626324 63873506 + 0 NA intron (NM_032199, intron 3 of 9) intron (NM_032199, intron 3 of 9) -59055 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 0.790 nan 0.964 0.109 0.808 0.410 0.102 1.688 0.163 0.176 0.153 0.478 0.664 4.780 0.165 0.327 0.234 2.848 5.263 0.465 0.477 0.867 0.448 0.822 0.848 0.532 0.722 0.487 0.521 0.243 0.144 0.139 0.201 0.517 0.660 0.176 nan 0.632 0.463 0.013 0.219 0.135 0.175 0.102 0.478 0.051 0.123 0.052 0.114 6183 chr5 14236713 14272812 + 0 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 110951 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding nan nan nan 2.963 0.725 0.364 0.968 1.469 0.247 1.407 0.742 1.171 nan 0.802 0.145 0.983 0.958 1.166 2.241 1.977 1.614 1.748 0.626 0.501 0.519 nan 3.626 2.560 4.124 3.255 3.632 0.833 1.341 1.960 2.250 0.934 nan 3.086 1.898 0.516 0.822 0.346 0.248 0.968 1.171 0.906 0.496 0.824 0.862 1051 chr10 16703618 16718620 + 0 NA intron (NM_152724, intron 7 of 7) intron (NM_152724, intron 7 of 7) -147115 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding nan 1.540 0.777 2.612 2.485 1.411 0.117 0.245 0.172 0.899 0.362 2.308 1.422 0.044 0.090 0.723 0.603 0.330 0.238 2.320 1.984 9.972 5.698 0.107 0.099 0.318 0.468 1.100 1.300 0.160 0.045 0.133 0.186 0.966 1.087 0.453 1.643 1.429 0.936 0.059 0.628 0.216 0.450 0.117 2.308 0.007 0.291 0.033 0.172 3033 chr16 3142335 3163974 + 0 NA Intergenic AluJo|SINE|Alu -3836 NM_001282415 84891 Hs.334515 NM_032805 ENSG00000130182 ZSCAN10 ZNF206 zinc finger and SCAN domain containing 10 protein-coding 1.170 nan 1.346 1.720 1.102 0.590 0.798 0.310 0.171 0.455 0.303 0.658 2.164 0.594 0.064 0.747 0.859 0.506 0.776 1.163 1.145 nan 1.379 0.906 0.921 0.780 nan 1.030 1.489 1.168 0.962 0.687 0.794 1.187 1.096 0.835 1.274 1.435 0.973 0.394 1.090 0.185 0.274 0.798 0.658 0.260 0.586 0.347 0.246 4802 chr20 678087 714271 + 0 NA Intergenic L1MEc|LINE|L1 -39356 NM_033129 85508 Hs.355284 NM_033129 ENSG00000215397 SCRT2 ZNF898B scratch family transcriptional repressor 2 protein-coding 1.002 1.079 1.063 0.121 0.298 0.124 0.274 0.084 0.077 0.139 0.140 0.064 0.828 0.192 0.082 3.611 5.030 0.229 0.284 0.282 0.275 0.376 0.128 0.267 0.273 0.446 0.703 0.229 0.219 0.920 0.726 0.609 0.724 0.082 0.108 0.422 0.657 0.209 0.234 0.042 0.076 0.027 0.046 0.274 0.064 0.793 0.108 0.292 0.058 2906 chr15 63755848 63809301 + 0 NA Intergenic MSTC|LTR|ERVL-MaLR -14136 NR_046341 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 1.467 1.537 nan 0.741 0.609 0.342 0.315 0.824 0.166 0.791 0.500 0.852 1.482 0.385 0.100 1.649 2.174 1.192 2.018 0.927 0.927 nan 0.663 0.889 0.900 1.276 1.717 2.137 2.892 2.411 2.027 0.697 0.978 2.518 2.809 1.644 3.562 1.220 0.693 0.155 0.443 0.848 0.178 0.315 0.852 0.220 0.586 0.254 0.890 3221 chr16 89571012 89576224 + 0 NA Intergenic MIRb|SINE|MIR -1178 NM_003119 6687 Hs.185597 NM_003119 ENSG00000197912 SPG7 CAR|CMAR|PGN|SPG5C SPG7, paraplegin matrix AAA peptidase subunit protein-coding nan 1.647 2.302 3.273 2.877 1.354 3.968 1.188 0.214 0.552 0.224 3.301 2.924 1.978 0.040 4.092 4.424 2.327 4.122 2.489 2.472 3.007 1.094 5.042 4.685 1.679 2.446 3.292 5.423 4.325 4.260 1.605 2.881 1.409 1.955 3.632 3.183 2.393 1.316 0.821 1.225 0.202 0.854 3.968 3.301 1.139 5.481 0.552 0.856 2836 chr15 32905282 32911702 + 0 NA exon (NM_014783, exon 1 of 12) exon (NM_014783, exon 1 of 12) 815 NM_001286480 9824 Hs.591130 NM_014783 ENSG00000198826 ARHGAP11A GAP (1-12) Rho GTPase activating protein 11A protein-coding 4.211 nan nan 2.827 4.484 2.721 4.282 2.930 0.375 3.079 2.113 5.290 8.427 4.171 0.131 4.583 5.064 6.735 8.443 6.798 5.928 5.321 2.277 7.812 7.893 4.895 5.736 5.549 7.932 8.719 9.464 2.936 6.829 6.855 8.984 4.692 6.315 3.042 1.608 3.059 3.220 2.465 2.830 4.282 5.290 1.782 3.009 3.838 1.858 4780 chr2 238599524 238644777 + 0 NA intron (NM_001137551, intron 2 of 11) intron (NM_001137551, intron 2 of 11) 21343 NM_001137553 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 1.122 nan 2.394 2.201 1.240 0.588 1.126 0.503 0.130 1.164 0.557 1.684 1.533 0.271 0.106 0.987 1.326 0.563 1.070 0.852 0.790 2.347 0.838 0.679 0.639 0.850 1.143 3.032 nan 0.647 0.436 0.748 1.169 1.536 2.338 0.648 1.339 1.240 0.685 0.582 0.606 0.385 0.368 1.126 1.684 0.088 1.045 0.354 0.175 1735 chr11 129870370 129879000 + 0 NA non-coding (NR_024233, exon 1 of 1) non-coding (NR_024233, exon 1 of 1) -1955 NM_020228 56980 Hs.275086 NM_020228 ENSG00000170325 PRDM10 PFM7 PR/SET domain 10 protein-coding 3.681 3.887 3.306 5.055 4.774 2.503 5.618 1.450 0.244 2.432 1.110 5.962 7.627 4.204 0.140 7.555 8.253 5.833 8.489 8.664 8.084 6.834 4.893 13.510 13.726 4.222 5.168 8.087 12.265 7.808 9.635 11.451 16.054 7.507 7.519 5.697 nan 3.027 1.931 5.405 4.470 1.689 3.390 5.618 5.962 0.782 2.374 5.625 1.762 2030 chr12 77819647 77834789 + 0 NA Intergenic Intergenic -367858 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding nan 0.732 0.581 0.122 0.357 0.221 0.085 0.612 0.159 0.113 0.119 0.063 0.298 0.036 0.070 0.347 0.263 0.221 0.223 0.485 0.532 0.183 0.079 0.275 0.279 4.788 5.255 nan 0.380 0.466 0.227 0.157 0.246 0.091 0.174 0.367 0.656 nan 0.633 0.073 0.325 0.006 0.062 0.085 0.063 0.025 0.033 0.033 0.132 1010 chr10 8066608 8096536 + 0 NA Intergenic Intergenic 12882 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 0.344 0.438 0.440 0.108 0.191 0.129 0.094 0.133 0.075 0.152 0.107 0.068 0.233 0.083 0.073 0.262 0.183 0.471 0.750 0.162 0.228 2.795 0.965 0.083 0.072 0.115 0.244 0.095 0.112 0.233 0.100 0.139 0.125 0.063 0.072 0.062 0.166 0.197 0.258 0.024 0.021 0.013 0.005 0.094 0.068 0.003 0.048 0.036 0.038 8377 chrX 24893673 24909648 + 0 NA intron (NM_016937, intron 34 of 36) intron (NM_016937, intron 34 of 36) 132405 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 0.713 0.837 0.506 0.160 0.345 0.171 0.128 0.109 0.081 0.366 0.221 0.090 0.300 0.149 0.046 0.089 0.077 0.496 0.797 0.305 0.333 2.532 2.821 0.443 0.358 0.330 0.554 0.391 0.696 0.325 0.233 0.144 0.209 0.740 0.828 0.278 0.632 0.685 0.533 0.038 0.072 0.079 0.055 0.128 0.090 0.031 0.031 0.037 0.112 3310 chr17 17724080 17754638 + 0 NA intron (NM_001005291, intron 1 of 19) L2b|LINE|L2 966 NM_001005291 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP-1c|SREBP1|SREBP1a|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 3.940 1.996 3.028 2.005 5.407 2.728 2.133 1.159 0.216 0.958 0.501 1.299 2.676 1.637 0.054 1.805 2.994 1.601 nan 1.726 1.627 2.506 1.337 2.894 3.156 1.293 1.771 4.563 5.301 nan 2.149 1.257 2.454 1.664 0.936 2.570 5.384 0.847 0.427 1.806 3.151 0.524 0.707 2.133 1.299 0.920 3.526 1.682 2.362 4083 chr19 42745435 42761713 + 0 NA exon (NM_006494, exon 4 of 4) exon (NM_006494, exon 4 of 4) 4477 NM_001308402 2077 Hs.655969 NM_006494 ENSG00000105722 ERF CHYTS|CRS4|PE-2|PE2 ETS2 repressor factor protein-coding 3.988 2.286 2.648 2.029 2.736 1.531 3.170 1.831 0.404 1.242 0.749 2.860 4.809 6.165 0.160 2.443 3.322 2.765 4.124 3.456 3.445 4.419 1.780 6.348 6.521 3.310 4.940 3.739 5.193 2.725 2.568 1.764 2.935 3.105 3.182 2.832 4.269 2.611 1.470 1.471 2.502 0.944 1.673 3.170 2.860 1.332 1.702 1.641 1.420 1590 chr11 95520765 95532317 + 0 NA intron (NM_014679, intron 1 of 10) intron (NM_014679, intron 1 of 10) 2916 NM_001243777 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 2.736 nan 1.984 2.752 2.902 1.666 2.075 0.890 0.112 2.421 0.958 2.658 7.419 2.707 0.183 6.336 5.655 4.176 nan 7.034 5.603 11.711 6.536 13.415 14.743 3.625 4.408 3.585 5.635 4.677 5.225 3.049 5.363 6.507 6.584 3.544 nan 3.501 1.586 3.706 2.231 1.084 2.150 2.075 2.658 0.965 1.360 1.829 0.914 4816 chr20 3868208 3880397 + 0 NA intron (NM_001324191, intron 2 of 7) intron (NM_001324191, intron 2 of 7) 3853 NM_001324193 80025 Hs.114180 NM_024960 ENSG00000125779 PANK2 C20orf48|HARP|HSS|NBIA1|PKAN pantothenate kinase 2 protein-coding 3.862 3.907 5.884 3.448 2.732 1.688 2.102 1.431 0.249 1.235 0.830 2.477 6.195 2.206 0.119 3.545 3.998 3.247 4.128 5.260 4.494 4.706 1.939 2.826 2.909 3.001 3.518 6.687 9.314 4.950 5.062 1.851 3.829 3.020 3.315 3.046 4.009 2.149 1.019 2.334 2.717 0.758 1.148 2.102 2.477 0.750 1.344 1.071 1.301 760 chr1 197880872 197887244 + 0 NA intron (NM_001014434, intron 1 of 5) intron (NM_001014434, intron 1 of 5) 2423 NM_001014434 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 3.250 nan 1.515 0.467 1.140 0.731 2.991 0.457 0.051 1.118 0.926 0.258 3.264 0.318 0.099 0.398 0.500 0.799 1.441 3.855 3.176 0.085 0.067 0.645 0.802 7.009 8.639 0.940 1.098 1.487 1.469 0.304 0.351 4.775 3.374 0.562 1.072 2.042 1.227 0.036 0.330 1.638 1.668 2.991 0.258 0.350 0.583 0.109 0.240 989 chr10 1549549 1568225 + 0 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) -9938 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168|bA466B20.1 ADARB2 antisense RNA 1 ncRNA 0.440 0.426 0.558 0.528 0.420 0.195 0.550 0.123 0.121 0.804 0.389 2.984 0.312 0.062 0.094 0.546 0.478 0.133 0.136 0.784 0.863 0.492 0.180 0.250 0.226 0.097 0.213 2.229 2.235 0.146 0.064 0.340 0.602 0.032 0.073 0.060 0.118 0.363 0.371 0.056 0.465 0.005 0.128 0.550 2.984 0.058 0.252 0.233 0.033 2945 chr15 72765182 72768598 + 0 NA promoter-TSS (NR_135678) promoter-TSS (NR_135678) 223 NM_005744 25820 Hs.268787 NM_005744 ENSG00000166233 ARIH1 ARI|HARI|HHARI|UBCH7BP ariadne RBR E3 ubiquitin protein ligase 1 protein-coding 6.948 6.905 6.640 5.191 10.280 4.412 7.276 5.640 0.565 4.436 1.771 8.955 16.454 5.136 0.123 8.653 10.263 12.618 16.404 12.534 11.927 10.138 7.963 19.415 20.900 7.011 8.581 9.564 17.077 15.914 18.341 6.231 10.642 6.600 5.630 11.854 8.656 4.412 2.466 3.557 6.235 0.582 2.899 7.276 8.955 1.653 5.426 2.573 1.839 4673 chr2 204442079 204450975 + 0 NA Intergenic AluSc5|SINE|Alu -46468 NM_001329728 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 0.997 3.486 1.694 1.554 0.422 0.235 0.160 0.175 0.038 0.072 0.102 1.233 9.153 0.036 0.051 0.507 0.531 1.602 5.285 0.393 0.420 0.609 0.144 4.027 3.883 0.575 0.763 6.118 11.306 0.586 0.302 1.709 3.303 0.056 0.034 0.555 1.261 0.393 0.533 1.275 0.195 0.339 0.160 1.233 0.051 0.080 3.215 0.153 3511 chr17 66504204 66511785 + 0 NA promoter-TSS (NM_212471) promoter-TSS (NM_212471) 73 NM_212471 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 4.991 nan 6.980 7.454 7.795 4.240 3.308 2.401 0.187 4.229 1.932 5.292 13.135 3.135 0.109 4.168 5.380 4.050 5.075 9.130 7.843 5.558 2.973 5.055 5.367 2.433 nan 13.631 17.280 6.183 5.655 2.000 4.547 6.357 5.871 3.232 3.580 5.152 2.348 1.519 4.209 1.134 2.274 3.308 5.292 1.194 3.744 1.609 0.738 4843 chr20 9041185 9071027 + 0 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) 6405 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 1.038 1.142 0.875 1.216 0.928 0.447 0.653 0.619 0.135 1.571 0.958 0.775 3.130 0.294 0.117 0.801 1.250 0.498 0.639 2.071 2.023 3.249 1.039 0.667 0.597 2.000 2.410 2.652 2.548 2.534 2.429 0.474 1.203 4.022 3.823 0.380 0.651 1.121 0.805 0.093 0.887 1.415 0.527 0.653 0.775 0.437 0.330 0.408 0.281 643 chr1 166939856 166951647 + 0 NA intron (NM_001286378, intron 1 of 12) L2c|LINE|L2 932 NM_001286378 84944 Hs.651245 NM_032858 ENSG00000143194 MAEL CT128|SPATA35 maelstrom spermatogenic transposon silencer protein-coding 0.874 nan 1.262 0.424 2.414 1.099 1.283 0.121 0.190 0.526 0.425 1.277 1.701 0.128 0.089 0.486 0.492 0.568 0.719 6.713 nan 5.988 1.507 0.198 0.192 0.736 1.253 0.843 nan 0.401 0.248 0.517 0.851 0.348 0.278 0.257 0.619 3.307 1.654 0.085 2.526 0.049 0.082 1.283 1.277 0.066 0.063 0.193 0.096 3290 chr17 16117396 16121700 + 0 NA promoter-TSS (NM_004278) promoter-TSS (NM_004278) -674 NM_006311 9611 Hs.462323 NM_006311 ENSG00000141027 NCOR1 N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR nuclear receptor corepressor 1 protein-coding 6.586 3.104 4.368 3.430 4.651 2.119 4.030 1.756 0.222 1.519 1.123 6.308 5.874 2.291 0.036 8.135 7.960 7.854 10.847 8.573 7.867 9.888 3.485 8.457 9.117 2.713 3.675 8.111 11.127 nan 11.894 2.893 5.878 3.815 3.638 9.101 8.959 2.350 0.984 2.249 2.910 0.797 2.891 4.030 6.308 1.996 11.190 1.611 3.417 6782 chr6 44267905 44302550 + 0 NA Intergenic MER58D|DNA|hAT-Charlie -4164 NM_020745 57505 Hs.158381 NM_020745 ENSG00000124608 AARS2 AARSL|COXPD8|LKENP|MT-ALARS|MTALARS alanyl-tRNA synthetase 2, mitochondrial protein-coding 1.403 1.121 1.387 0.333 0.475 0.231 0.503 0.231 0.099 0.186 0.160 0.376 0.707 0.251 0.106 0.705 0.642 0.481 0.663 0.686 0.813 1.247 0.560 0.643 0.691 0.423 0.649 0.751 nan 1.321 1.277 0.332 0.507 0.346 0.347 1.323 3.547 0.616 0.548 0.118 0.418 0.058 0.160 0.503 0.376 0.126 0.135 0.069 1.894 7296 chr7 56172321 56184880 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR -4277 NM_001320327 51142 Hs.389996 NM_016139 ENSG00000106153 CHCHD2 C7orf17|MNRR1|NS2TP|PARK22 coiled-coil-helix-coiled-coil-helix domain containing 2 protein-coding nan 2.068 1.462 1.096 1.083 0.511 0.681 0.582 0.255 0.737 0.442 1.038 1.979 0.985 0.177 1.540 1.553 1.472 2.513 1.594 1.513 2.346 0.944 2.801 3.020 1.249 1.391 5.907 7.263 1.648 1.658 0.860 1.266 1.601 1.824 1.292 1.406 1.148 0.763 0.701 0.347 0.311 0.412 0.681 1.038 0.241 0.766 0.337 0.372 1455 chr11 63674273 63707513 + 0 NA Intergenic Intergenic -6577 NM_173587 283248 Hs.98788 NM_173587 ENSG00000167771 RCOR2 - REST corepressor 2 protein-coding nan 1.190 1.377 2.036 0.820 0.448 2.101 0.360 0.170 0.193 0.181 1.062 2.205 1.376 0.103 3.867 5.230 0.748 1.111 3.385 2.992 1.974 0.697 1.525 1.440 1.291 1.835 4.080 4.881 3.526 3.812 1.164 1.747 1.973 1.520 2.217 4.348 0.802 0.574 2.184 0.916 0.777 1.623 2.101 1.062 1.281 1.540 0.771 1.972 4131 chr19 49651407 49662125 + 0 NA exon (NM_002152, exon 1 of 6) exon (NM_002152, exon 1 of 6) 1915 NM_002152 3270 Hs.436885 NM_002152 ENSG00000130528 HRC - histidine rich calcium binding protein protein-coding 2.783 1.964 3.395 0.960 1.854 0.991 0.632 0.378 0.120 0.612 0.292 1.271 4.560 1.932 0.102 1.380 2.246 1.236 2.047 2.440 2.400 1.677 0.750 3.960 4.019 1.234 1.852 1.595 2.070 3.832 4.080 1.242 1.998 1.026 0.992 2.867 3.255 1.434 0.999 1.466 5.052 0.233 0.282 0.632 1.271 0.930 0.870 1.315 1.092 5547 chr3 133074719 133083262 + 0 NA intron (NM_001282865, intron 2 of 3) L1ME1|LINE|L1 -39849 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 1.061 nan nan 0.174 0.644 0.262 0.241 0.374 0.188 0.351 0.285 0.144 0.277 0.013 0.093 1.214 0.961 8.137 1.603 0.472 0.647 1.782 0.590 0.706 0.876 0.423 0.761 0.258 0.321 nan 1.522 0.192 0.311 0.141 0.166 0.709 2.524 0.717 0.585 0.051 0.197 0.023 0.074 0.241 0.144 0.067 0.024 0.034 0.876 5345 chr3 25077097 25091691 + 0 NA intron (NM_001290216, intron 2 of 10) L1MA9|LINE|L1 213580 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 0.783 1.270 0.581 0.024 0.302 0.132 0.547 1.512 0.066 0.151 0.108 0.016 0.218 0.075 0.074 0.210 0.125 3.636 7.050 0.739 0.702 0.111 0.028 0.207 0.174 0.708 0.844 0.240 0.212 nan 0.299 0.233 0.429 0.739 1.121 0.165 0.215 0.384 0.349 0.259 0.066 0.092 0.243 0.547 0.016 0.099 0.051 0.245 0.060 1597 chr11 100501477 100516005 + 0 NA Intergenic Intergenic -49666 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 1.115 1.080 1.034 0.060 0.330 0.088 0.417 0.274 0.088 0.142 0.092 0.066 0.749 0.067 0.104 0.562 0.318 0.249 0.398 0.362 0.447 0.144 0.096 0.594 0.613 4.500 5.003 0.146 0.162 1.404 0.788 0.202 0.360 0.436 0.278 1.009 2.554 0.750 0.691 0.031 0.037 0.068 0.425 0.417 0.066 0.142 0.154 0.061 0.844 101 chr1 16156970 16185903 + 0 NA intron (NR_024279, intron 1 of 1) intron (NR_024279, intron 1 of 1) -2923 NM_015001 23013 Hs.744843 NM_015001 ENSG00000065526 SPEN HIAA0929|MINT|RBM15C|SHARP spen family transcriptional repressor protein-coding 4.248 2.816 nan 10.724 4.061 2.064 2.797 1.741 0.278 2.315 1.185 2.068 6.349 3.700 0.173 4.409 3.807 3.614 5.470 7.312 6.159 3.867 1.982 8.211 nan 3.676 nan 8.784 12.731 nan 5.038 2.441 3.878 2.358 3.094 4.535 4.968 2.250 1.225 4.993 3.241 0.651 1.900 2.797 2.068 0.920 1.672 2.208 1.913 2458 chr13 112707052 112734824 + 0 NA promoter-TSS (NM_005986) promoter-TSS (NM_005986) -975 NM_005986 6656 Hs.202526 NM_005986 ENSG00000182968 SOX1 - SRY-box 1 protein-coding 0.519 nan 0.657 1.908 8.194 4.432 8.728 0.038 0.058 1.724 0.802 11.949 18.578 0.035 0.045 1.479 2.219 0.268 0.434 19.843 16.045 3.486 1.230 0.029 0.036 0.019 0.049 4.043 4.931 0.347 0.267 0.971 1.326 0.947 0.563 0.074 0.107 1.099 0.577 6.787 5.037 0.107 0.486 8.728 11.949 0.010 0.007 0.488 0.040 7760 chr8 77686259 77707991 + 0 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) -101615 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 1.248 0.861 0.868 0.113 0.297 0.177 0.737 2.079 0.149 0.151 0.122 0.083 0.253 0.105 0.094 0.345 0.274 1.669 1.840 0.484 0.663 0.698 0.255 0.748 0.753 0.499 0.839 0.181 0.259 0.474 0.185 0.766 1.547 2.845 4.878 0.225 0.570 0.418 0.411 0.182 0.233 0.778 0.018 0.737 0.083 0.009 0.061 0.501 0.062 6616 chr6 12007640 12014194 + 0 NA Intergenic Intergenic -1807 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 7.665 nan 5.468 3.996 3.748 2.252 4.977 7.713 0.466 2.253 0.924 4.079 6.161 3.356 0.121 4.141 7.614 7.496 11.774 6.556 4.538 5.887 2.298 8.065 7.634 3.001 3.551 5.949 11.106 4.623 7.149 2.078 4.918 4.707 3.334 6.027 6.954 2.395 1.415 1.398 4.295 1.513 4.045 4.977 4.079 1.152 3.291 3.098 1.949 569 chr1 155157105 155166739 + 0 NA exon (NM_001204286, exon 2 of 9) exon (NM_001204286, exon 2 of 9) 784 NM_001204289 4582 Hs.89603 NM_002456 ENSG00000185499 MUC1 ADMCKD|ADMCKD1|CA 15-3|CD227|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM mucin 1, cell surface associated protein-coding 4.247 nan 2.233 3.060 4.982 2.714 5.437 1.857 0.550 1.576 0.768 5.600 12.316 5.243 0.225 3.228 5.056 2.237 3.950 7.172 6.789 4.076 1.547 2.106 2.378 2.323 3.246 6.658 11.037 1.704 1.774 5.081 8.372 5.250 3.560 2.924 2.654 2.474 1.419 5.772 7.431 1.417 2.097 5.437 5.600 1.923 3.422 9.286 0.615 5048 chr20 62251750 62261158 + 0 NA intron (NM_012384, intron 1 of 9) intron (NM_012384, intron 1 of 9) 2000 NM_012384 26205 Hs.473286 NM_012384 ENSG00000101216 GMEB2 GMEB-2|P79PIF|PIF79 glucocorticoid modulatory element binding protein 2 protein-coding 3.700 3.285 3.079 2.717 2.224 1.522 3.777 2.039 0.362 1.766 0.815 4.152 3.854 2.492 0.162 4.698 nan 2.398 2.921 4.161 4.130 4.773 1.847 12.550 12.513 2.831 4.020 3.159 5.040 4.833 5.217 2.881 4.972 1.685 1.756 3.498 4.839 2.479 1.399 2.489 2.763 0.428 1.254 3.777 4.152 0.906 3.861 1.253 1.431 6444 chr5 126110465 126116807 + 0 NA intron (NR_134488, intron 1 of 11) CpG 791 NM_001198557 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding nan 6.246 4.323 5.125 9.981 5.479 3.542 2.227 0.499 2.649 1.310 4.239 12.232 9.233 0.255 4.057 4.824 7.437 nan 12.153 10.667 6.926 3.032 15.290 15.942 5.942 7.208 7.189 11.937 10.599 13.697 2.590 5.252 13.916 14.410 6.563 6.253 2.624 1.588 5.074 8.602 4.256 4.968 3.542 4.239 1.376 4.212 2.443 3.373 1877 chr12 26250010 26280294 + 0 NA Intergenic Intergenic 12851 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding nan nan nan 3.053 0.193 0.080 0.067 0.846 0.059 0.268 0.172 0.059 1.018 0.183 0.120 0.765 1.399 0.796 1.534 0.365 0.395 0.689 0.188 6.012 6.435 1.027 1.333 1.138 1.613 0.893 0.671 4.221 5.897 0.097 0.202 0.752 1.115 0.417 0.311 0.053 0.442 0.050 0.097 0.067 0.059 0.238 0.553 5.376 0.429 7695 chr8 61589706 61595439 + 0 NA intron (NM_017780, intron 1 of 37) CpG 1248 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 12.127 2.635 9.378 7.443 6.409 3.551 5.130 0.066 2.940 1.455 10.499 9.424 3.614 0.062 2.890 4.278 2.994 3.783 17.849 13.990 6.758 2.272 2.197 1.944 3.754 nan 5.425 8.392 nan 13.910 1.739 6.915 10.140 10.132 9.317 6.376 4.489 2.607 2.715 5.743 2.912 4.223 5.130 10.499 1.005 6.923 1.605 3.111 5610 chr3 154040705 154044683 + 0 NA promoter-TSS (NM_020865) promoter-TSS (NM_020865) -408 NM_001114397 170506 Hs.446270 NM_020865 ENSG00000174953 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH-box helicase 36 protein-coding nan 3.036 1.823 5.627 4.410 2.375 2.638 2.131 0.212 2.733 1.268 3.039 2.860 1.436 0.105 7.239 6.621 14.419 11.467 5.425 4.115 10.061 4.614 11.024 10.649 4.001 nan 3.455 6.555 8.857 8.312 6.086 9.889 1.979 2.462 4.770 4.126 3.256 2.412 1.412 1.647 0.215 2.230 2.638 3.039 0.905 1.124 3.559 1.116 2227 chr12 133531026 133534110 + 0 NA intron (NM_183238, intron 1 of 4) C-rich|Low_complexity|Low_complexity 300 NM_183238 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 2.238 1.244 1.489 1.568 1.880 0.677 1.842 0.707 0.103 1.473 0.670 2.469 3.849 3.769 0.147 0.315 0.661 0.348 0.372 3.186 2.594 3.651 1.300 4.959 4.873 0.796 1.367 nan 3.969 1.917 2.414 1.247 1.817 1.367 0.862 1.747 2.376 0.143 0.174 2.421 0.551 0.217 12.570 1.842 2.469 0.712 1.976 0.805 1.248 8319 chr9 136704545 136709965 + 0 NA intron (NM_001134398, intron 3 of 29) intron (NM_001134398, intron 3 of 29) -102178 NM_007101 1757 Hs.198003 NM_007101 ENSG00000123453 SARDH BPR-2|DMGDHL1|SAR|SARD|SDH sarcosine dehydrogenase protein-coding 2.275 0.841 1.310 2.669 1.531 0.770 2.237 0.124 1.247 0.703 1.695 0.896 0.020 0.044 0.242 0.357 0.236 0.321 1.928 2.416 nan 0.312 1.067 0.956 0.241 0.307 2.295 3.526 2.173 2.658 1.497 2.163 2.756 3.339 0.483 0.733 2.378 1.222 0.359 0.593 1.211 2.804 2.237 1.695 3.729 1.211 2.691 0.276 7917 chr8 125714978 125742061 + 0 NA intron (NM_014751, intron 1 of 13) intron (NM_014751, intron 1 of 13) 12229 NM_001282971 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS1, I-BAR domain containing protein-coding nan nan nan 2.104 1.194 0.744 0.443 0.115 0.097 0.544 0.319 2.575 nan 0.149 0.074 1.849 3.108 0.760 0.724 2.435 2.298 2.692 0.981 nan nan 0.841 1.298 1.679 2.147 1.103 1.190 1.871 3.370 0.503 0.469 0.672 1.212 1.405 0.833 1.077 1.276 0.152 0.653 0.443 2.575 0.541 0.552 2.032 0.474 7677 chr8 53294380 53321035 + 0 NA intron (NM_014682, intron 2 of 25) intron (NM_014682, intron 2 of 25) 14732 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18, C2H2C-type zinc finger protein-coding 1.237 nan 0.902 2.593 1.098 0.584 0.202 0.085 0.054 0.838 0.308 2.619 0.879 0.048 0.100 0.348 0.295 0.431 0.472 1.932 2.354 2.875 1.051 0.472 0.455 0.584 nan 1.635 1.132 0.459 0.284 0.224 0.331 0.345 0.415 0.217 0.344 3.137 1.681 0.022 0.354 0.035 0.036 0.202 2.619 0.095 1.540 0.092 0.079 8318 chr9 136547129 136581918 + 0 NA intron (NM_001134707, intron 13 of 20) AluSp|SINE|Alu 38956 NM_001134707 1757 Hs.198003 NM_007101 ENSG00000123453 SARDH BPR-2|DMGDHL1|SAR|SARD|SDH sarcosine dehydrogenase protein-coding nan 0.546 1.292 0.430 0.722 0.378 0.358 0.084 0.041 0.250 0.168 0.971 0.928 0.051 0.069 0.221 0.388 0.129 0.184 5.881 5.625 nan 0.240 0.143 0.141 0.065 0.151 2.166 2.544 3.798 5.468 0.242 0.265 0.282 0.304 0.372 0.858 0.884 0.550 2.494 0.707 0.082 0.050 0.358 0.971 0.268 0.753 0.051 0.139 6315 chr5 71159847 71189040 + 0 NA Intergenic L1MA5A|LINE|L1 159453 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 1.100 nan 1.394 0.096 1.253 0.510 0.406 0.223 0.121 0.101 0.115 0.082 0.796 0.067 0.121 0.191 0.188 0.229 0.268 0.275 0.334 nan 0.745 0.127 0.136 0.591 nan 0.570 0.579 1.109 0.732 0.114 0.250 3.698 4.439 0.818 2.662 0.902 0.560 0.136 0.762 1.005 0.094 0.406 0.082 0.129 0.133 0.170 1.538 136 chr1 23340403 23348418 + 0 NA Intergenic AluSz|SINE|Alu -1531 NM_015013 23028 Hs.591518 NM_015013 ENSG00000004487 KDM1A AOF2|BHC110|CPRF|KDM1|LSD1 lysine demethylase 1A protein-coding 5.435 2.038 nan 4.223 2.523 1.400 2.527 1.061 0.241 1.975 0.809 1.541 4.917 1.775 0.188 3.634 3.940 2.507 3.721 6.087 5.150 4.011 1.512 8.136 7.625 4.106 5.846 4.116 8.846 6.514 8.986 3.012 5.503 2.203 1.957 6.934 5.421 2.339 1.585 2.429 2.438 0.358 1.460 2.527 1.541 0.836 1.123 1.740 1.554 4390 chr2 66652543 66665696 + 0 NA non-coding (NR_046438, exon 2 of 4) non-coding (NR_046438, exon 2 of 4) 1483 NR_046438 730198 Hs.526753 NR_046438 MEIS1-AS3 - MEIS1 antisense RNA 3 ncRNA 3.209 1.090 nan 1.992 4.828 2.146 2.401 1.539 0.220 1.438 1.105 2.272 7.681 1.158 0.118 1.276 2.096 3.701 5.144 4.809 4.273 nan 1.678 2.062 1.937 1.606 2.193 4.661 5.926 1.865 2.010 0.498 1.864 3.386 2.447 2.593 3.570 1.043 0.549 2.511 2.866 0.992 1.099 2.401 2.272 0.543 2.316 0.594 1.641 308 chr1 53963592 53980879 + 0 NA 3' UTR (NM_147193, exon 10 of 10) 3' UTR (NM_147193, exon 10 of 10) 47163 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 1.180 0.680 1.231 0.148 0.406 0.250 2.006 1.239 0.204 0.186 0.142 0.172 1.171 0.050 0.075 0.554 0.840 0.584 0.840 2.621 2.409 0.502 0.221 0.464 0.505 2.353 2.621 1.264 1.783 0.859 0.784 0.624 1.088 0.679 0.492 0.730 nan 0.545 0.546 3.485 0.735 0.221 0.106 2.006 0.172 0.463 0.135 0.442 0.446 4604 chr2 175618396 175637833 + 0 NA intron (NM_001039523, intron 1 of 9) intron (NM_001039523, intron 1 of 9) 1086 NM_001039523 1134 Hs.434479 NM_000079 ENSG00000138435 CHRNA1 ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS cholinergic receptor nicotinic alpha 1 subunit protein-coding 1.565 0.868 2.770 0.140 0.326 0.144 0.164 0.207 0.041 0.082 0.150 0.475 0.505 0.050 0.058 0.420 0.398 0.226 0.295 1.155 1.235 0.683 0.205 0.290 0.359 0.952 1.208 1.461 1.969 2.760 2.449 0.163 0.233 0.124 0.127 2.254 6.671 0.518 0.422 0.245 0.174 0.020 0.874 0.164 0.475 0.257 0.152 0.045 1.849 7635 chr8 31660263 31670793 + 0 NA intron (NM_013962, intron 1 of 4) L1MB1|LINE|L1 168260 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 1.016 1.331 nan 0.761 0.243 0.122 0.120 0.086 0.123 0.886 0.535 0.023 2.962 0.056 0.113 0.395 0.291 0.135 0.175 0.555 0.757 0.125 0.080 0.156 0.235 1.306 1.817 1.834 1.352 0.654 0.354 0.082 0.205 1.551 1.931 0.367 0.924 3.368 1.836 0.248 0.461 0.371 0.032 0.120 0.023 0.101 1.575 0.056 0.204 8221 chr9 100565059 100573489 + 0 NA Intergenic MIR|SINE|MIR -46263 NM_004473 2304 Hs.159234 NM_004473 ENSG00000178919 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 forkhead box E1 protein-coding 1.123 1.983 1.621 2.198 1.024 0.552 2.607 0.144 0.119 0.909 0.465 0.309 2.769 0.310 0.059 1.086 1.382 1.259 4.045 2.292 1.979 5.708 2.816 1.051 1.219 0.442 0.738 1.879 nan 1.860 2.215 0.701 0.684 7.027 6.887 0.387 0.527 nan 0.929 0.334 0.697 2.204 0.386 2.607 0.309 0.687 0.188 0.211 0.029 6081 chr4 174252870 174258061 + 0 NA promoter-TSS (NM_001130689) promoter-TSS (NM_001130689) 44 NM_001130688 3148 Hs.434953 NM_002129 ENSG00000164104 HMGB2 HMG2 high mobility group box 2 protein-coding nan nan 3.648 11.452 8.839 4.974 2.556 3.033 0.157 2.850 1.438 8.572 15.526 5.158 0.154 5.615 6.246 8.883 nan 12.146 10.275 7.987 4.535 8.558 8.193 4.296 5.548 7.107 9.937 10.266 13.556 2.330 5.945 7.464 7.843 7.499 7.843 2.494 1.315 4.879 4.848 2.340 7.293 2.556 8.572 1.269 1.595 2.421 2.855 3044 chr16 7351590 7375131 + 0 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -19391 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog 1 protein-coding 0.670 nan 0.492 0.075 5.554 2.796 0.087 0.038 0.116 3.825 1.449 0.609 0.249 0.019 0.064 0.553 0.616 0.040 0.035 0.666 0.953 nan 0.735 0.078 0.089 0.102 nan 0.111 0.102 0.232 0.071 0.327 0.482 1.204 1.285 0.529 2.120 2.736 1.466 0.047 0.053 0.205 1.809 0.087 0.609 0.008 0.028 0.109 0.286 7848 chr8 103247831 103253743 + 0 NA promoter-TSS (NR_125415) promoter-TSS (NR_125415) 272 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 4.576 nan nan 2.633 2.373 1.323 0.604 2.255 0.162 0.504 0.308 2.348 6.308 1.184 0.085 2.043 2.589 2.440 3.768 4.553 4.266 nan 1.804 8.004 8.245 1.577 nan 8.853 14.983 nan 2.227 1.270 2.990 1.521 1.279 2.173 nan 1.972 1.095 1.121 1.881 0.288 0.980 0.604 2.348 0.307 2.254 1.240 0.672 3683 chr18 20702098 20724355 + 0 NA Intergenic AluSg|SINE|Alu -1302 NM_001256438 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 1.401 1.147 1.545 1.264 1.172 0.468 2.686 0.855 0.217 1.007 0.519 3.311 1.611 0.400 0.094 2.750 3.613 1.238 nan 3.406 3.062 3.625 1.152 0.808 0.849 0.867 1.447 1.694 2.761 0.881 1.038 1.264 2.634 3.203 3.285 0.651 1.025 2.538 1.672 2.358 2.538 1.005 2.839 2.686 3.311 0.239 0.455 1.352 0.189 5940 chr4 77116774 77136334 + 0 NA intron (NM_005506, intron 1 of 11) L1MA8|LINE|L1 8498 NM_005506 950 Hs.349656 NM_005506 ENSG00000138760 SCARB2 AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII scavenger receptor class B member 2 protein-coding 2.874 1.828 2.930 3.496 2.895 1.527 1.340 1.078 0.115 1.040 0.470 2.282 3.207 0.615 0.086 2.473 3.907 1.352 2.383 3.222 2.811 3.569 1.245 2.074 1.965 2.576 3.070 7.409 8.809 4.777 4.649 1.331 2.368 2.526 2.600 3.910 8.971 2.341 1.311 2.896 4.700 0.649 3.257 1.340 2.282 0.342 2.512 1.916 3.264 1380 chr11 34615081 34623055 + 0 NA Intergenic Intergenic -23520 NM_012153 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 0.586 0.940 nan 0.116 0.518 0.315 0.269 0.426 0.040 0.119 0.126 0.352 0.891 0.056 0.160 3.527 4.115 7.719 2.643 0.280 0.377 1.106 0.389 0.658 0.699 0.260 0.380 0.330 0.180 0.333 0.161 1.080 1.941 0.161 0.145 0.222 nan 0.654 0.476 0.076 0.095 0.048 0.040 0.269 0.352 0.024 0.127 0.871 0.078 990 chr10 1577524 1618524 + 0 NA intron (NR_033387, intron 1 of 1) AluSx|SINE|Alu 29199 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168|bA466B20.1 ADARB2 antisense RNA 1 ncRNA 0.497 0.389 0.629 0.776 0.819 0.356 0.270 0.086 0.137 0.689 0.364 3.736 0.832 0.043 0.089 0.610 0.837 0.123 0.161 1.601 1.466 0.710 0.275 0.219 0.267 0.099 0.194 2.463 3.196 0.193 0.105 0.394 0.712 0.030 0.036 0.082 0.111 0.649 0.444 0.944 0.871 0.009 0.051 0.270 3.736 0.103 0.332 0.280 0.027 3251 chr17 4881587 4892286 + 0 NA intron (NM_015099, intron 3 of 22) AluSx1|SINE|Alu 3729 NM_001171167 23125 Hs.632242 NM_015099 ENSG00000108509 CAMTA2 - calmodulin binding transcription activator 2 protein-coding 1.831 1.189 1.513 0.534 1.209 0.688 0.621 0.557 0.161 0.513 0.311 1.758 1.563 0.903 0.120 5.925 7.484 5.469 3.012 2.942 2.808 2.566 0.776 6.844 7.274 1.269 1.754 1.710 2.023 1.425 1.398 1.892 2.992 0.637 0.489 1.462 2.802 0.899 0.580 1.528 1.106 0.115 0.726 0.621 1.758 0.738 1.561 0.970 0.707 7689 chr8 59755216 59771402 + 0 NA intron (NM_014729, intron 4 of 8) intron (NM_014729, intron 4 of 8) -190905 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 1.509 nan 1.227 0.456 1.375 0.698 0.846 0.378 0.080 0.453 0.251 1.359 0.673 0.179 0.097 0.419 0.420 0.331 0.969 1.666 1.540 2.014 0.601 0.089 0.052 1.167 nan 1.920 2.017 0.476 0.270 0.085 0.125 0.694 0.990 0.221 0.425 1.590 0.972 0.620 3.997 0.160 0.425 0.846 1.359 0.012 0.487 0.023 0.354 860 chr1 214278712 214285286 + 0 NA Intergenic AluSz|SINE|Alu 120155 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 1.328 1.056 1.065 0.106 0.571 0.399 0.433 0.181 0.170 0.323 0.182 0.385 nan 0.065 0.126 1.444 2.025 8.101 4.658 0.643 0.712 nan 0.428 0.592 0.559 0.685 nan 0.761 0.650 0.343 0.198 0.647 0.639 0.143 0.161 0.402 1.211 1.240 0.860 0.068 0.013 0.015 0.690 0.433 0.385 0.031 0.092 0.111 0.354 5041 chr20 61545270 61571513 + 0 NA promoter-TSS (NM_080796) promoter-TSS (NM_080796) -488 NM_001193370 11083 Hs.517172 NM_022105 ENSG00000101191 DIDO1 BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8 death inducer-obliterator 1 protein-coding 2.668 2.491 1.735 1.703 1.740 0.965 1.491 1.312 0.245 0.830 0.432 1.967 2.639 1.821 0.169 3.907 nan 1.954 2.954 2.592 2.683 2.655 1.321 6.812 6.936 1.844 2.727 2.665 3.973 2.988 2.838 2.465 4.737 0.786 1.004 1.685 1.622 1.648 0.917 1.154 1.314 0.206 0.794 1.491 1.967 0.473 1.379 1.174 0.415 2142 chr12 110703507 110723444 + 0 NA Intergenic AluSg|SINE|Alu -5557 NM_001681 488 Hs.506759 NM_001681 ENSG00000174437 ATP2A2 ATP2B|DAR|DD|SERCA2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 protein-coding nan nan 1.616 2.029 2.253 1.172 3.732 2.280 0.783 1.807 1.133 1.944 4.362 1.486 0.163 1.461 1.768 1.879 4.164 nan nan nan 2.012 2.553 2.793 2.681 3.465 nan nan 4.381 4.769 1.368 2.474 4.300 4.286 2.805 4.293 nan 1.866 1.724 2.566 0.903 1.088 3.732 1.944 0.944 1.006 0.755 1.256 1834 chr12 12029353 12040683 + 0 NA intron (NM_001987, intron 5 of 7) intron (NM_001987, intron 5 of 7) -188860 NM_138723 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 0.965 1.653 2.487 5.056 1.182 0.404 0.797 0.150 0.070 1.990 1.029 2.801 3.317 0.073 0.108 0.346 0.625 0.867 3.539 nan 2.029 9.487 2.498 1.144 1.331 0.529 0.901 5.412 4.878 0.406 0.285 0.378 0.709 0.753 1.100 0.480 0.663 1.856 0.815 0.241 0.286 0.222 0.035 0.797 2.801 0.236 0.675 0.168 0.142 7166 chr7 13755643 13768193 + 0 NA Intergenic MER103C|DNA|hAT-Charlie 264221 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding nan 1.055 nan 0.126 0.249 0.178 0.246 0.264 0.166 0.592 0.530 0.388 0.328 0.043 0.112 nan 0.291 0.356 0.352 0.342 0.551 0.755 0.212 0.342 0.425 4.432 4.978 0.426 0.377 1.101 0.613 0.126 0.078 1.511 1.301 0.132 0.240 0.654 0.593 0.040 0.128 0.290 0.451 0.246 0.388 0.117 0.108 0.039 0.051 6766 chr6 42407714 42428494 + 0 NA intron (NM_033502, intron 2 of 17) intron (NM_033502, intron 2 of 17) 1685 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 2.440 1.480 1.541 1.318 1.461 0.719 1.652 0.842 0.209 0.579 0.414 2.799 2.270 1.286 0.123 2.698 3.477 0.858 0.978 2.563 2.359 4.107 1.277 1.550 1.740 1.162 1.607 2.780 nan 2.145 2.429 0.936 2.619 2.021 1.442 1.299 2.032 1.164 0.763 1.091 1.781 0.790 0.763 1.652 2.799 0.398 0.618 1.634 0.969 7874 chr8 109983660 109991947 + 0 NA Intergenic Intergenic -111850 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 0.996 nan nan 0.124 0.266 0.232 0.266 0.097 0.078 0.057 0.059 0.030 0.821 0.052 0.089 0.248 0.253 0.160 0.334 0.411 0.430 10.281 3.275 0.665 0.549 0.410 nan 0.608 nan nan 0.358 0.089 0.206 0.326 0.328 0.595 nan 0.391 0.464 0.054 0.164 0.046 0.266 0.030 0.012 0.012 0.024 0.119 977 chr1 246371336 246385418 + 0 NA intron (NM_001167740, intron 5 of 11) intron (NM_001167740, intron 5 of 11) 202337 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding nan 1.357 nan 8.039 0.783 0.274 0.344 0.186 0.159 2.423 1.632 3.310 14.815 0.085 0.139 0.986 1.266 0.316 0.637 5.679 5.745 10.599 3.101 0.448 0.460 0.513 0.735 3.736 4.409 0.472 0.259 0.506 0.768 1.789 1.647 0.447 0.709 1.799 1.075 4.265 0.069 0.256 0.085 0.344 3.310 0.062 3.277 0.317 0.134 6813 chr6 53042800 53061509 + 0 NA Intergenic Intergenic -38530 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing homolog 1 protein-coding 0.932 1.438 nan 1.432 0.916 0.419 0.513 0.164 0.188 0.261 0.214 1.170 1.938 0.088 0.143 0.427 0.469 0.355 0.491 0.739 0.834 2.930 0.751 0.402 0.355 0.350 0.569 6.401 4.618 0.432 0.162 0.234 0.412 0.791 0.894 0.235 0.341 1.513 0.820 0.238 0.148 0.086 0.096 0.513 1.170 0.021 0.508 0.095 0.047 4067 chr19 41103693 41121639 + 0 NA intron (NM_001042545, intron 6 of 30) AluSz|SINE|Alu 5389 NM_001042545 8425 Hs.466766 NM_003573 ENSG00000090006 LTBP4 ARCL1C|LTBP-4|LTBP4L|LTBP4S latent transforming growth factor beta binding protein 4 protein-coding 1.194 0.986 0.949 0.624 1.474 0.834 1.064 0.501 0.159 0.395 0.229 0.554 9.453 1.957 0.100 0.274 0.367 0.677 0.994 1.015 0.883 1.064 0.252 0.537 0.563 1.135 1.603 2.591 3.543 1.182 0.998 0.623 0.690 0.283 0.276 1.076 2.054 1.269 0.716 0.637 1.478 0.021 0.259 1.064 0.554 0.953 1.696 0.432 0.605 604 chr1 159194870 159203901 + 0 NA Intergenic Intergenic 24336 NM_001122951 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding nan nan 1.975 0.069 0.259 0.125 0.084 0.098 0.073 0.053 0.297 0.071 0.278 0.085 0.127 1.256 0.998 13.499 9.451 0.242 nan 0.118 0.073 0.112 0.117 0.224 0.414 0.339 0.331 0.397 0.300 3.290 5.372 0.066 0.113 0.187 0.512 0.432 0.456 0.771 0.135 0.011 0.053 0.084 0.071 0.011 0.022 3.394 0.149 2623 chr14 59101011 59150122 + 0 NA Intergenic Intergenic 20011 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding nan nan 1.721 0.784 0.458 0.196 0.845 0.538 0.210 0.134 0.164 0.271 0.414 0.091 0.113 0.337 0.329 0.596 1.017 0.965 0.916 1.422 0.492 nan 0.391 0.538 0.813 1.659 nan 1.333 1.177 0.223 0.394 4.325 3.737 1.366 4.282 1.183 0.600 0.880 0.324 1.720 1.709 0.845 0.271 0.164 0.269 0.058 1.964 360 chr1 68212490 68226797 + 0 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 68783 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 1.644 1.217 nan 0.141 0.621 0.304 2.630 2.860 0.302 0.404 0.188 0.526 1.928 0.574 0.100 0.442 0.422 3.975 6.990 0.895 0.932 1.746 0.573 0.589 0.524 nan nan 1.028 nan 0.464 0.247 0.373 0.604 1.337 1.422 0.459 1.069 1.290 0.756 0.959 2.281 0.414 0.729 2.630 0.526 0.549 0.276 0.305 0.235 2409 chr13 101853746 101864706 + 0 NA intron (NM_052867, intron 13 of 43) L1ME4a|LINE|L1 209587 NM_052867 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 0.668 0.983 0.537 0.095 0.407 0.197 0.329 0.089 0.088 0.070 0.120 0.066 0.299 0.020 0.090 0.790 0.498 0.310 0.480 0.339 0.377 0.395 0.163 0.118 0.136 0.298 nan 0.194 0.258 0.573 0.304 0.153 0.166 0.059 0.060 0.305 nan 0.200 0.177 6.582 0.049 0.052 0.159 0.329 0.066 0.018 0.083 0.036 0.113 5012 chr20 55204150 55217935 + 0 NA intron (NM_003222, intron 5 of 6) MER2|DNA|TcMar-Tigger 6684 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 2.623 2.512 6.820 0.051 0.143 0.046 0.094 0.043 0.116 0.022 0.066 0.050 2.228 0.369 0.115 1.304 nan 1.874 2.246 0.170 0.174 0.100 0.071 0.469 0.495 0.148 0.194 0.108 0.144 0.678 0.609 1.423 3.551 0.083 0.059 0.141 0.194 0.174 0.289 0.277 0.349 0.014 0.052 0.094 0.050 0.141 0.037 0.696 0.036 4533 chr2 144100461 144126736 + 0 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 226699 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 0.906 nan 1.052 0.109 0.342 0.256 0.390 0.126 0.091 0.203 0.195 0.583 0.327 0.033 0.080 0.370 0.257 0.155 0.252 0.357 0.451 1.004 0.370 0.210 0.204 5.218 5.016 0.301 0.303 0.906 0.663 0.083 0.228 0.051 0.041 0.607 1.367 0.296 0.290 0.070 0.031 0.007 0.289 0.390 0.583 0.026 0.027 0.051 0.226 35 chr1 3563865 3649254 + 0 NA promoter-TSS (NM_001126241) promoter-TSS (NM_001126241) -677 NM_001204190 7161 Hs.192132 NM_005427 ENSG00000078900 TP73 P73 tumor protein p73 protein-coding 1.247 nan 2.918 1.406 1.257 0.687 0.418 0.145 0.102 0.602 0.397 0.654 5.807 0.271 0.095 0.367 0.429 0.477 0.708 7.024 6.555 1.002 0.364 0.439 0.526 0.913 nan nan 2.549 nan 1.425 0.928 1.518 0.640 0.665 0.251 0.312 1.613 0.830 4.274 1.786 0.210 0.149 0.418 0.654 0.653 0.964 1.109 0.103 2758 chr14 99810908 99825402 + 0 NA Intergenic Intergenic -80105 NM_001282237 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha B-cell CLL/lymphoma 11B protein-coding 1.244 0.475 0.696 0.074 0.216 0.207 0.341 0.094 0.078 0.043 0.061 0.083 0.275 0.060 0.078 0.298 0.258 0.128 0.114 0.518 0.514 0.128 0.067 0.169 0.175 5.145 5.064 0.250 0.336 1.675 1.468 0.186 0.223 0.090 0.188 0.333 0.567 0.340 0.608 0.097 0.110 0.046 1.358 0.341 0.083 0.698 0.021 0.034 0.263 3007 chr15 102514046 102519952 + 0 NA TTS (NR_003659) TTS (NR_003659) 2297 NR_034090 100288486 Hs.644359 NR_034090 ENSG00000248472 DDX11L9 - DEAD/H-box helicase 11 like 9 pseudo 1.930 nan 1.727 0.506 0.550 0.300 5.405 0.297 0.081 1.575 0.906 0.912 nan 0.308 0.136 0.609 0.869 0.525 0.826 5.664 5.198 1.334 0.538 0.726 0.961 1.694 2.308 1.071 0.955 1.342 0.994 0.410 0.429 2.038 1.570 0.527 0.799 4.458 1.996 10.044 4.852 1.677 0.285 5.405 0.912 1.075 1.333 0.048 0.420 2130 chr12 107519235 107528003 + 0 NA Intergenic Intergenic -35984 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 PHLL1 cryptochrome circadian clock 1 protein-coding 1.200 1.346 nan 0.341 4.076 1.882 2.272 0.166 0.276 2.456 1.385 5.754 6.888 0.037 0.164 0.385 0.399 0.306 0.329 7.329 8.446 1.993 0.704 0.476 0.487 0.389 0.769 1.062 2.503 1.623 1.552 0.192 0.180 2.127 1.885 0.451 1.194 2.516 1.556 4.271 3.993 0.471 0.027 2.272 5.754 0.298 0.174 0.046 0.197 1028 chr10 13177395 13185231 + 0 NA Intergenic Intergenic -22241 NM_018518 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding nan 0.701 0.817 0.323 0.409 0.164 0.317 0.297 0.230 0.101 0.083 0.342 0.257 0.068 0.085 0.457 0.349 0.301 0.408 1.217 1.345 1.640 0.325 0.168 0.288 0.427 0.585 1.505 1.673 0.660 1.093 0.131 0.229 0.503 0.411 0.270 0.497 0.332 0.369 0.044 0.443 0.049 4.423 0.317 0.342 0.176 0.052 0.025 0.215 6240 chr5 39057253 39081087 + 0 NA intron (NM_152756, intron 2 of 37) MIRb|SINE|MIR 5340 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 1.100 1.400 nan 2.470 0.499 0.269 0.452 2.185 0.272 1.022 0.601 1.015 1.547 0.860 0.137 1.621 1.601 1.503 1.854 1.638 1.599 1.320 0.632 14.709 14.801 1.618 2.029 2.362 3.110 2.292 2.182 1.064 1.960 0.669 0.656 0.910 1.105 0.809 0.702 0.209 0.403 0.120 0.496 0.452 1.015 0.196 1.355 0.403 0.311 2468 chr13 114198013 114208539 + 0 NA intron (NM_017905, intron 12 of 12) intron (NM_017905, intron 12 of 12) -35727 NR_026580 7027 Hs.79353 NM_007111 ENSG00000198176 TFDP1 DILC|DP1|DRTF1|Dp-1 transcription factor Dp-1 protein-coding 0.802 nan 0.892 3.140 0.776 0.397 1.382 0.116 0.108 0.104 0.078 2.220 1.853 0.061 0.073 0.899 0.952 0.369 0.642 3.658 3.516 1.162 0.359 0.288 0.265 0.082 0.169 2.560 3.323 0.378 0.242 0.503 0.469 0.345 0.361 0.389 0.422 1.071 0.570 0.826 5.965 0.073 0.256 1.382 2.220 0.078 0.105 0.084 0.089 1819 chr12 10305987 10346499 + 0 NA intron (NM_001079815, intron 1 of 5) AluSx|SINE|Alu -1453 NM_002543 4973 Hs.412484 NM_002543 ENSG00000173391 OLR1 CLEC8A|LOX1|LOXIN|SCARE1|SLOX1 oxidized low density lipoprotein receptor 1 protein-coding 0.671 0.567 0.653 0.260 0.196 0.118 0.075 0.083 0.056 0.127 0.155 0.055 0.417 0.134 0.138 0.185 0.119 2.063 7.159 nan 0.429 0.420 0.175 0.413 0.378 0.143 0.281 0.336 0.417 0.237 0.073 0.208 0.285 0.056 0.086 0.297 0.491 0.192 0.236 0.027 0.062 0.021 0.021 0.075 0.055 0.024 0.111 0.063 0.098 4801 chr20 649925 658457 + 0 NA intron (NM_033129, intron 1 of 1) intron (NM_033129, intron 1 of 1) 2632 NM_033129 85508 Hs.355284 NM_033129 ENSG00000215397 SCRT2 ZNF898B scratch family transcriptional repressor 2 protein-coding 1.994 2.182 0.494 0.297 0.731 0.247 1.618 0.088 0.033 1.103 0.601 0.070 2.393 0.088 0.059 10.622 12.765 0.164 0.157 0.641 0.509 0.700 0.200 0.224 0.167 3.126 3.540 0.285 0.302 5.359 5.991 3.409 5.421 0.161 0.192 2.629 2.437 0.231 0.192 0.962 0.094 0.033 0.046 1.618 0.070 2.120 0.155 2.530 0.201 2041 chr12 79939134 79961347 + 0 NA Intergenic AluSx1|SINE|Alu 134550 NM_002583 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding nan 0.718 0.543 0.142 0.229 0.122 0.186 0.556 0.227 0.089 0.152 0.123 0.395 0.287 0.106 0.372 0.303 1.654 5.975 0.516 0.620 0.471 0.227 0.388 0.366 0.452 0.674 nan 0.587 0.400 0.210 0.144 0.242 0.053 0.112 0.240 0.481 nan 0.561 0.063 0.088 0.029 0.063 0.186 0.123 0.035 0.051 0.058 0.067 2657 chr14 66972954 66976988 + 0 NA 5' UTR (NM_020806, exon 1 of 23) 5' UTR (NM_020806, exon 1 of 23) 846 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding nan 3.499 5.213 6.335 3.438 2.231 5.068 1.117 0.316 1.520 1.104 4.683 8.695 4.487 0.207 7.007 7.313 3.604 4.869 10.705 7.974 1.368 0.497 nan 12.413 5.167 6.589 6.855 nan 14.298 18.419 5.439 11.417 0.362 0.324 5.866 5.740 5.334 3.763 5.403 9.072 0.048 6.213 5.068 4.683 2.098 3.037 3.278 1.622 6891 chr6 107419021 107459108 + 0 NA Intergenic Intergenic -3428 NM_001080450 57673 Hs.418045 NM_001080450 ENSG00000178409 BEND3 KIAA1553 BEN domain containing 3 protein-coding 2.054 nan nan 1.282 1.218 0.688 1.249 0.162 0.133 0.376 0.197 0.919 1.872 0.849 0.134 9.049 10.499 0.798 0.930 1.341 nan 1.756 0.612 1.348 1.283 1.098 1.376 1.098 1.369 nan 1.882 0.514 1.157 1.781 1.410 1.385 1.583 0.877 0.534 0.928 1.031 0.526 0.593 1.249 0.919 0.352 0.751 0.409 0.537 3669 chr18 12700448 12705672 + 0 NA promoter-TSS (NM_020232) promoter-TSS (NM_020232) 73 NM_020232 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 5.555 3.581 3.984 5.998 4.823 3.044 2.207 2.749 0.490 2.233 1.071 6.388 8.347 4.236 0.182 9.242 8.387 7.293 10.576 12.033 12.317 14.363 8.024 12.540 13.693 3.004 4.238 5.241 8.545 8.216 8.462 4.909 6.941 8.532 10.144 6.840 5.982 4.685 2.711 3.146 3.162 1.614 3.631 2.207 6.388 1.937 1.630 1.553 1.923 315 chr1 54698002 54831103 + 0 NA intron (NM_001009955, intron 4 of 16) intron (NM_001009955, intron 4 of 16) 62436 NR_103541 619518 Hs.591438 NM_001034847 ENSG00000198711 SSBP3-AS1 C1orf191|MST128|MSTP128 SSBP3 antisense RNA 1 ncRNA 2.169 1.044 3.510 0.429 1.217 0.634 0.881 0.316 0.104 0.419 0.237 0.467 0.690 0.162 0.103 0.637 0.960 0.316 0.504 1.483 1.566 1.099 0.345 0.463 0.480 1.453 2.112 1.374 1.649 3.238 3.008 0.555 0.801 0.501 0.580 2.116 nan 1.560 0.965 0.383 0.221 0.151 0.409 0.881 0.467 0.704 0.299 0.265 2.882 4842 chr20 8732256 8740966 + 0 NA intron (NM_182734, intron 23 of 32) MER65A|LTR|ERV1 -313090 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 0.695 1.357 0.684 0.465 0.310 0.147 0.419 0.266 0.130 0.125 0.121 0.123 0.417 0.025 0.064 0.555 0.555 0.196 0.339 0.484 0.404 8.181 6.747 0.309 0.297 0.876 1.400 4.626 4.165 0.727 0.438 0.227 0.331 0.208 0.788 0.179 0.535 1.177 0.898 0.029 0.051 0.011 0.027 0.419 0.123 0.113 2.750 0.068 0.188 6460 chr5 137875970 137881166 + 0 NA exon (NM_004730, exon 2 of 11) exon (NM_004730, exon 2 of 11) 421 NM_001291975 2107 Hs.483494 NM_004730 ENSG00000120705 ETF1 D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1 eukaryotic translation termination factor 1 protein-coding 5.518 3.745 nan 2.749 4.759 2.624 1.582 3.978 0.279 1.751 0.627 3.977 9.556 4.670 0.184 3.377 3.134 9.071 13.622 5.818 5.552 6.624 3.686 18.949 19.950 5.338 6.462 5.654 8.165 7.717 9.080 4.272 7.584 7.201 8.855 4.615 5.802 2.459 1.361 1.592 2.860 1.131 1.722 1.582 3.977 0.967 5.086 1.679 0.994 2263 chr13 34115170 34122344 + 0 NA intron (NM_001243476, intron 3 of 17) intron (NM_001243476, intron 3 of 17) 132215 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 2.814 2.901 2.388 3.191 3.002 1.632 1.495 2.142 0.228 1.938 1.069 5.355 6.154 1.492 0.143 8.490 8.657 5.124 4.214 9.710 10.755 8.479 6.528 5.423 5.355 5.034 5.224 7.200 10.828 5.081 4.739 4.316 7.629 3.459 4.325 7.165 7.361 2.370 1.129 4.616 2.494 0.712 1.802 1.495 5.355 0.391 2.293 3.931 1.543 3386 chr17 37023139 37040577 + 0 NA intron (NR_073384, intron 1 of 7) intron (NR_073384, intron 1 of 7) 5746 NM_006148 3927 Hs.741156 NM_006148 ENSG00000002834 LASP1 Lasp-1|MLN50 LIM and SH3 protein 1 protein-coding nan 1.923 1.370 0.963 2.690 1.515 1.405 1.510 0.340 0.864 0.469 1.255 5.733 2.807 0.107 2.776 4.094 1.416 2.373 nan 1.935 2.623 0.823 3.499 3.992 1.092 1.457 2.791 3.584 nan 1.731 1.102 2.409 1.428 1.651 1.284 3.078 1.067 0.604 1.041 1.609 0.317 0.749 1.405 1.255 0.467 1.071 1.206 1.117 3954 chr19 6048034 6076000 + 0 NA intron (NM_134433, intron 1 of 16) AluJb|SINE|Alu 48647 NM_000635 5990 Hs.465709 NM_000635 ENSG00000087903 RFX2 - regulatory factor X2 protein-coding 2.252 2.283 0.897 1.571 3.387 1.802 1.038 0.453 0.104 1.629 0.801 3.885 3.995 0.058 0.079 0.262 0.185 0.256 0.609 2.451 3.045 1.042 1.562 0.231 0.267 2.036 2.960 3.043 nan 1.062 0.757 0.123 0.212 1.685 0.997 0.190 0.207 3.667 2.277 0.515 0.551 0.224 0.023 1.038 3.885 0.446 1.437 0.014 0.088 2240 chr13 24004425 24028082 + 0 NA Intergenic L1MEe|LINE|L1 -8386 NM_014363 26278 Hs.159492 NM_014363 ENSG00000151835 SACS ARSACS|DNAJC29|PPP1R138|SPAX6 sacsin molecular chaperone protein-coding 1.586 1.011 1.129 0.695 0.158 0.041 0.244 1.139 0.332 0.140 0.140 0.214 0.912 0.138 0.072 1.042 0.967 0.459 nan 1.164 1.101 0.557 0.169 0.212 0.318 0.679 1.008 1.147 1.365 4.698 4.744 0.429 0.758 0.078 0.111 1.823 4.034 1.849 1.216 0.038 0.732 0.040 1.287 0.244 0.214 0.658 0.890 0.263 2.209 4239 chr2 17757364 17771709 + 0 NA intron (NM_003385, intron 1 of 3) intron (NM_003385, intron 1 of 3) 42729 NM_003385 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 0.723 0.562 0.857 0.300 0.119 0.100 0.206 0.089 0.020 0.176 0.098 0.050 1.919 0.022 0.134 0.397 0.319 2.685 6.824 0.218 0.273 0.233 0.096 0.379 0.285 0.695 1.107 0.485 nan 0.441 0.216 0.365 0.321 0.047 0.060 0.168 nan 0.322 0.302 0.761 0.217 0.007 0.038 0.206 0.050 0.211 0.050 0.042 0.121 908 chr1 229355900 229374339 + 0 NA Intergenic Intergenic -41690 NM_001271998 5867 Hs.296169 NM_004578 ENSG00000168118 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 1.222 nan 3.747 1.683 0.574 0.397 0.691 0.122 0.086 0.317 0.288 0.467 1.167 0.064 0.135 0.671 0.752 1.392 5.050 0.899 nan 2.999 0.860 1.117 1.283 1.345 1.685 5.667 6.344 0.746 0.505 0.228 0.323 2.128 3.638 0.448 1.028 1.325 0.820 0.112 0.097 0.564 0.091 0.691 0.467 0.121 0.535 0.113 0.201 3127 chr16 34738929 34745794 + 0 NA promoter-TSS (NR_034018) promoter-TSS (NR_034018) -820 NR_034018 100130700 Hs.97712 NR_034018 TP53TG3HP - TP53 target 3 family member H, pseudogene pseudo 0.442 0.382 0.458 0.051 0.260 0.184 0.241 0.043 0.070 1.714 0.646 0.151 0.619 0.884 0.100 0.170 0.102 0.163 0.216 0.097 0.181 1.503 0.503 0.093 0.127 3.161 3.490 1.779 7.520 0.246 0.071 0.136 0.193 0.061 0.057 1.177 1.216 0.096 0.090 0.013 0.035 0.241 0.151 0.677 4.752 0.316 0.072 903 chr1 228269155 228272209 + 0 NA promoter-TSS (NM_001024228) promoter-TSS (NM_001024228) -169 NM_001024227 375 Hs.286221 NM_001658 ENSG00000143761 ARF1 - ADP ribosylation factor 1 protein-coding 9.079 7.140 10.770 8.423 10.572 5.587 8.500 5.355 0.786 7.239 2.262 7.459 11.731 5.266 0.146 8.000 7.962 14.761 21.572 13.159 12.060 10.631 6.026 26.119 27.140 5.003 6.358 7.742 14.170 9.336 11.143 3.506 7.505 7.826 10.820 12.774 9.966 3.606 2.290 4.742 5.864 1.245 5.317 8.500 7.459 1.301 3.865 1.246 3.250 5397 chr3 71074869 71116153 + 0 NA intron (NM_032682, intron 10 of 20) intron (NM_032682, intron 10 of 20) 18563 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 0.879 0.628 1.591 0.891 0.751 0.369 0.319 0.345 0.039 0.672 0.351 0.642 1.033 0.031 0.067 0.301 0.226 1.937 nan 0.669 0.713 0.937 0.500 0.177 0.189 0.443 0.688 0.925 1.755 1.153 0.987 0.184 0.438 0.837 1.621 0.218 nan 0.835 0.522 0.038 0.360 0.188 0.235 0.319 0.642 0.087 0.644 0.110 0.117 5504 chr3 119886428 119901822 + 0 NA intron (NM_153002, intron 7 of 8) intron (NM_153002, intron 7 of 8) 69017 NM_001168271 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 2.046 nan 1.533 0.904 0.894 0.481 0.242 0.939 0.136 0.418 0.229 0.843 0.825 0.055 0.059 0.362 0.268 0.233 0.378 1.015 nan 6.436 2.407 0.321 0.409 nan 0.951 3.383 3.412 2.612 3.250 0.224 0.300 0.674 0.448 0.399 0.633 2.361 1.527 2.199 0.620 0.056 0.814 0.242 0.843 0.403 0.322 0.090 0.199 1847 chr12 14817434 14820770 + 0 NA intron (NM_004963, intron 10 of 26) LTR9|LTR|ERV1 30417 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 0.678 0.615 0.718 13.927 0.605 0.239 0.346 0.106 0.098 3.511 2.279 0.216 5.810 0.108 0.270 0.341 0.269 0.414 0.654 nan 0.851 19.255 10.170 0.440 0.456 0.216 0.626 11.733 16.533 0.416 0.168 0.235 0.460 0.100 0.121 0.244 0.444 2.464 1.645 0.067 0.137 0.029 0.551 0.346 0.216 1.546 0.132 0.076 6788 chr6 45572239 45600802 + 0 NA Intergenic Intergenic 196206 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 1.680 0.979 0.862 0.153 0.676 0.275 0.286 1.276 0.214 0.120 0.128 0.223 0.454 0.042 0.134 1.903 1.246 3.218 7.945 0.302 0.311 0.120 0.073 1.331 1.325 0.139 0.248 0.561 nan 0.535 0.304 2.210 2.902 0.091 0.116 0.455 1.237 0.737 0.641 0.086 0.062 0.010 0.074 0.286 0.223 0.007 0.057 1.624 0.450 5617 chr3 156390395 156411373 + 0 NA intron (NM_001184718, intron 2 of 5) intron (NM_001184718, intron 2 of 5) 6431 NM_001184718 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding nan 1.742 1.754 1.208 1.629 0.917 0.659 1.665 0.231 1.809 1.139 1.112 1.700 0.580 0.106 0.969 1.763 1.927 2.882 1.547 1.627 7.746 4.615 3.490 3.223 2.794 nan 1.631 3.636 2.449 2.050 0.682 1.606 1.029 1.198 2.099 3.018 2.045 1.393 0.329 0.564 0.224 0.478 0.659 1.112 0.190 0.372 0.656 1.011 1406 chr11 45937731 45957264 + 0 NA intron (NM_152312, intron 6 of 13) intron (NM_152312, intron 6 of 13) 3270 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding nan 2.000 1.631 2.417 1.446 0.648 0.964 0.325 0.082 1.569 1.028 1.859 2.897 0.631 0.096 3.599 4.019 1.604 2.235 4.455 3.875 5.135 1.403 2.055 2.040 0.992 1.294 1.624 1.924 1.366 1.216 1.632 2.527 1.179 1.154 1.257 nan 2.115 1.181 1.472 2.363 0.209 0.583 0.964 1.859 0.423 1.406 0.930 0.353 1721 chr11 126666607 126702110 + 0 NA intron (NM_032531, intron 1 of 16) L1PA11|LINE|L1 -126284 NR_046986 100874251 Hs.319053 NR_046986 ENSG00000254960 KIRREL3-AS2 - KIRREL3 antisense RNA 2 ncRNA 0.644 1.226 0.740 1.433 0.679 0.253 0.617 0.040 0.058 0.548 0.281 1.652 2.081 0.051 0.092 0.635 0.595 0.181 0.273 1.938 2.368 2.036 0.524 0.126 0.128 0.195 0.372 2.209 2.083 0.458 0.283 0.645 1.024 0.319 0.388 0.351 nan 2.463 1.416 0.781 0.685 0.051 0.152 0.617 1.652 0.136 0.042 0.466 0.195 3376 chr17 36566978 36585898 + 0 NA Intergenic Intergenic -8282 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding nan 2.310 0.955 1.200 5.078 2.868 1.875 0.600 0.169 1.797 0.881 3.625 4.523 1.255 0.091 4.357 4.801 0.560 0.853 nan 4.909 4.766 2.268 6.234 6.982 1.078 1.324 5.970 6.184 nan 2.935 2.638 2.787 1.618 1.570 1.994 3.857 2.162 1.066 3.606 3.336 0.291 0.941 1.875 3.625 0.779 1.503 0.864 1.014 1805 chr12 7068276 7083091 + 0 NA TTS (NR_003010) TTS (NR_003010) 1086 NR_003010 677777 Hs.689636 NR_003010 ENSG00000238795 SCARNA12 U89 small Cajal body-specific RNA 12 ncRNA 3.219 nan nan 11.413 5.688 2.999 1.986 0.329 0.130 4.280 1.817 4.916 10.184 1.848 0.184 3.000 3.163 5.529 8.279 nan 8.912 17.019 7.002 13.684 14.440 2.458 3.386 6.012 8.622 3.105 3.313 3.440 5.450 8.434 8.891 3.894 nan 2.340 1.267 5.407 4.745 1.655 4.663 1.986 4.916 12.876 1.275 2.279 1.179 1727 chr11 128159245 128173442 + 0 NA Intergenic Intergenic 225862 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 1.058 1.516 0.940 1.438 3.897 1.986 0.340 0.571 0.022 3.835 1.814 2.253 0.786 0.128 0.131 1.745 3.239 2.994 0.699 3.133 3.192 4.786 3.042 0.227 0.295 0.225 0.303 5.740 9.412 0.471 0.401 1.281 1.791 2.014 1.681 0.236 nan 3.265 1.822 1.557 0.044 0.689 0.094 0.340 2.253 0.014 0.301 0.686 0.373 5717 chr3 180890377 180895495 + 0 NA promoter-TSS (NR_075093) promoter-TSS (NR_075093) 4 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 1.070 1.084 0.841 0.220 0.419 0.360 0.099 0.132 0.096 0.242 0.260 0.352 0.621 0.254 0.114 0.271 0.189 0.209 0.273 1.333 1.230 14.867 7.089 0.170 0.183 0.250 0.291 0.261 0.374 0.587 0.355 0.081 0.205 0.124 0.122 0.292 0.547 0.974 0.703 0.021 0.156 0.052 0.753 0.099 0.352 0.039 0.038 0.072 8240 chr9 112672941 112688214 + 0 NA intron (NM_001037293, intron 4 of 6) intron (NM_001037293, intron 4 of 6) -130301 NM_001004065 11217 Hs.591908 NM_001004065 ENSG00000241978 AKAP2 AKAP-2|AKAPKL|MISP2|PRKA2 A-kinase anchoring protein 2 protein-coding 0.929 0.956 nan 0.449 2.410 1.578 0.210 0.540 0.085 1.356 0.567 1.520 0.473 0.021 0.071 0.180 0.115 0.421 0.430 1.318 1.075 2.928 1.001 0.302 0.288 0.491 0.901 2.079 nan 1.742 1.571 0.161 0.221 2.857 4.179 0.118 0.194 nan 1.576 0.084 1.851 1.230 0.042 0.210 1.520 0.641 0.253 0.071 0.370 4495 chr2 131477412 131490074 + 0 NA Intergenic AluSp|SINE|Alu -2900 NM_207364 344561 Hs.452574 NM_207364 ENSG00000173302 GPR148 BTR|PGR6 G protein-coupled receptor 148 protein-coding nan 0.950 nan 0.061 1.175 0.471 0.282 0.098 0.038 0.111 0.110 0.700 4.925 0.241 0.061 0.474 0.664 0.440 0.671 1.733 1.159 5.988 0.992 0.357 0.350 0.481 0.783 1.539 nan 0.907 0.870 0.432 0.647 0.573 0.325 0.428 0.570 0.155 0.251 4.602 0.879 0.068 0.044 0.282 0.700 0.307 0.016 0.223 0.198 1480 chr11 67033895 67046800 + 0 NA intron (NM_001619, intron 1 of 20) intron (NM_001619, intron 1 of 20) 6442 NM_001619 156 Hs.83636 NM_001619 ENSG00000173020 GRK2 ADRBK1|BARK1|BETA-ARK1 G protein-coupled receptor kinase 2 protein-coding nan 0.963 2.242 1.784 2.438 1.113 1.478 0.941 0.124 0.870 0.345 2.531 1.388 0.726 0.094 3.579 5.335 1.277 1.964 3.705 3.558 2.788 1.056 2.847 2.724 1.188 1.549 4.797 5.263 0.922 0.866 2.274 3.736 1.053 1.195 0.793 0.881 1.511 0.887 0.606 1.738 0.227 0.786 1.478 2.531 1.012 2.205 1.599 0.238 6962 chr6 129671170 129686873 + 0 NA intron (NM_000426, intron 32 of 64) intron (NM_000426, intron 32 of 64) 352349 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 0.742 0.798 0.706 0.146 0.165 0.103 0.368 0.086 0.072 0.072 0.105 0.106 0.229 0.042 0.123 0.433 0.448 0.555 0.471 0.188 0.263 7.351 1.250 0.343 0.296 0.344 0.395 0.467 0.627 0.720 0.226 0.224 0.329 0.070 0.110 0.213 0.427 0.443 0.495 0.014 1.021 0.006 0.026 0.368 0.106 0.030 0.026 0.095 0.079 3581 chr17 76221266 76225677 + 0 NA Intergenic Intergenic -3920 NM_001204211 283999 Hs.632228 NM_001145529 ENSG00000204278 TMEM235 ARGM1 transmembrane protein 235 protein-coding 1.594 1.461 6.045 1.748 0.372 0.072 1.365 0.170 0.108 0.836 0.290 0.467 0.562 0.133 0.107 0.675 1.353 0.386 0.451 0.804 0.961 0.697 0.325 0.388 0.501 nan 3.104 2.200 2.386 3.890 4.284 0.363 0.513 0.359 0.627 0.797 1.124 nan 0.639 0.150 0.538 0.063 0.160 1.365 0.467 1.034 7.067 0.046 0.282 3265 chr17 7727306 7749156 + 0 NA Intergenic CpG -5004 NM_001080424 23135 Hs.223678 NM_001080424 ENSG00000132510 KDM6B JMJD3 lysine demethylase 6B protein-coding 3.952 1.883 2.521 2.050 4.037 1.888 2.302 1.299 0.111 1.142 0.574 2.368 6.240 3.976 0.130 2.847 4.184 2.852 4.778 5.418 4.318 4.506 2.536 4.970 5.481 2.296 3.021 5.638 8.395 1.779 2.443 1.115 1.780 2.490 2.246 4.614 7.601 1.407 0.791 2.643 2.976 0.468 1.372 2.302 2.368 1.149 3.217 1.086 2.291 7092 chr6 163108866 163129176 + 0 NA intron (NM_013987, intron 1 of 10) intron (NM_013987, intron 1 of 10) -29143 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PARK2CRG PARK2 coregulated protein-coding 0.761 nan 0.991 0.100 0.173 0.079 1.050 0.073 0.066 0.055 0.060 0.094 0.176 0.080 0.103 0.451 0.420 0.265 0.240 0.354 0.350 5.199 1.665 0.170 0.210 1.351 1.410 0.201 0.210 nan 0.412 0.116 0.191 3.521 2.786 0.445 0.861 0.338 0.319 0.017 0.016 1.009 0.035 1.050 0.094 0.014 0.045 0.030 0.304 3415 chr17 41462790 41497820 + 0 NA Intergenic Intergenic 3952 NM_001661 379 Hs.183153 NM_001661 ENSG00000175906 ARL4D ARF4L|ARL6 ADP ribosylation factor like GTPase 4D protein-coding 2.803 2.801 nan 2.237 2.761 1.532 1.092 0.975 0.284 1.149 0.637 0.929 3.665 0.989 0.126 2.167 2.492 1.589 2.377 2.533 nan 1.708 0.759 3.648 3.898 1.655 2.266 0.704 nan 3.230 2.593 1.181 1.518 2.356 2.505 2.744 8.404 2.182 1.309 1.287 1.852 0.776 0.725 1.092 0.929 1.156 0.992 0.614 2.460 876 chr1 220688360 220706834 + 0 NA Intergenic Intergenic -3928 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 2.794 nan 2.995 4.965 3.577 2.016 1.587 0.182 0.044 1.288 0.625 5.590 7.403 0.357 0.116 1.285 1.855 1.393 2.169 5.902 nan 0.261 0.155 3.518 3.647 0.927 1.237 4.667 4.838 3.001 2.653 0.512 1.228 1.122 0.707 2.251 2.487 2.737 1.306 3.338 0.839 0.200 1.138 1.587 5.590 0.670 1.703 0.262 0.741 8274 chr9 128604569 128620130 + 0 NA intron (NR_024123, intron 2 of 6) intron (NR_024123, intron 2 of 6) 101871 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding nan nan 1.429 0.388 0.375 0.228 0.436 0.297 0.079 0.358 0.318 0.169 nan 0.182 0.070 0.181 0.162 0.206 0.357 0.446 0.547 0.644 0.255 0.227 0.224 1.270 nan 0.528 0.552 6.314 4.242 0.096 0.174 1.508 1.612 1.962 4.317 nan 0.480 0.057 0.206 0.459 0.097 0.436 0.169 0.262 0.072 0.038 1.559 5741 chr3 183083670 183103954 + 0 NA intron (NM_015078, intron 3 of 29) intron (NM_015078, intron 3 of 29) 52245 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 0.903 1.210 0.780 4.860 6.912 3.655 0.252 0.138 0.143 2.405 1.113 8.612 3.834 0.059 0.096 1.491 1.424 0.421 0.432 4.114 5.570 5.609 1.947 0.370 0.394 0.338 0.494 6.191 6.088 0.762 0.370 0.549 0.923 0.983 0.911 0.241 0.349 3.699 1.698 3.436 1.608 0.160 0.599 0.252 8.612 0.043 0.346 0.336 0.169 1012 chr10 10565494 10570349 + 0 NA intron (NM_001326319, intron 1 of 16) L1MA7|LINE|L1 63443 NM_001326321 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP, Elav-like family member 2 protein-coding nan 0.601 0.481 0.074 0.201 0.296 0.265 0.187 0.191 0.053 0.049 0.277 0.022 0.094 4.181 5.090 11.709 2.362 0.124 0.240 0.542 0.272 0.162 0.069 0.353 0.445 0.086 0.113 0.190 0.060 0.324 0.664 0.044 0.074 0.256 0.378 0.090 0.097 0.023 0.073 0.020 0.032 0.265 0.049 0.061 0.077 342 chr1 62900370 62906796 + 0 NA intron (NM_003368, intron 1 of 8) CpG 1200 NM_003368 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 8.271 4.799 nan 6.379 8.532 4.632 4.905 4.085 0.275 3.097 1.425 7.887 12.145 5.549 0.258 7.184 6.608 8.319 11.498 16.983 16.497 9.514 7.382 17.197 18.185 nan 9.041 10.607 15.893 10.682 12.306 5.026 9.946 5.140 5.383 10.830 8.519 3.717 2.158 5.805 5.367 0.923 4.540 4.905 7.887 2.203 2.647 2.368 3.638 2883 chr15 57486126 57574386 + 0 NA intron (NM_001306220, intron 4 of 11) intron (NM_001306220, intron 4 of 11) 18601 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20 transcription factor 12 protein-coding 0.940 1.049 1.311 1.369 3.325 1.663 0.615 0.743 0.125 1.070 0.778 3.334 5.061 0.066 0.090 0.581 0.597 0.670 0.774 2.308 2.848 2.116 0.789 0.803 0.779 0.787 1.142 4.745 5.410 2.392 1.777 0.804 1.522 2.008 2.534 0.831 1.602 1.535 0.705 0.604 1.013 0.471 0.386 0.615 3.334 0.103 0.555 1.497 0.321 64 chr1 8927744 8966353 + 0 NA Intergenic AluJr|SINE|Alu -7897 NM_001428 2023 Hs.517145 NM_001428 ENSG00000074800 ENO1 ENO1L1|HEL-S-17|MPB1|NNE|PPH enolase 1 protein-coding 2.077 nan 1.945 2.994 1.391 0.811 1.317 1.836 0.670 0.650 0.496 0.376 1.831 0.776 0.120 1.085 1.405 1.674 4.193 2.748 2.399 0.954 0.362 2.658 2.742 2.230 nan nan 5.887 nan 2.988 0.913 1.746 0.814 0.790 1.829 1.864 1.002 0.724 0.855 0.898 0.183 0.538 1.317 0.376 0.306 1.007 0.600 0.904 45 chr1 6319302 6349902 + 0 NA intron (NM_181866, intron 8 of 8) intron (NM_181866, intron 8 of 8) -13567 NM_207370 387509 Hs.531581 NM_207370 ENSG00000158292 GPR153 PGR1 G protein-coupled receptor 153 protein-coding 2.365 nan 2.385 1.652 0.809 0.403 0.807 0.195 0.063 0.154 0.167 0.638 1.111 0.301 0.109 1.716 2.590 0.461 0.678 1.712 1.532 0.707 0.391 0.909 1.001 0.781 nan nan 9.310 nan 0.575 1.191 1.929 0.317 0.357 1.084 2.008 0.427 0.415 0.500 1.479 0.031 0.495 0.807 0.638 1.207 1.299 1.423 0.897 5124 chr21 40157733 40188042 + 0 NA Intergenic Intergenic -4344 NM_001256295 2114 Hs.644231 NM_005239 ENSG00000157557 ETS2 ETS2IT1 ETS proto-oncogene 2, transcription factor protein-coding nan 0.873 2.602 2.013 1.185 0.503 1.065 0.697 0.112 0.771 0.413 2.458 3.965 0.082 0.082 1.196 1.406 0.717 1.087 2.527 2.562 nan 0.788 0.315 0.349 0.596 nan 5.133 5.798 1.139 1.059 1.999 2.900 0.912 0.833 0.568 0.678 2.927 1.493 0.376 1.905 0.208 0.195 1.065 2.458 0.450 1.875 1.677 0.155 2153 chr12 115337799 115366112 + 0 NA Intergenic Intergenic -229986 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding nan nan 0.449 0.198 0.368 0.234 0.457 0.069 0.103 0.034 0.082 0.276 0.766 0.065 0.102 0.749 0.910 0.165 0.198 nan nan nan 0.052 7.544 8.110 0.129 0.271 nan nan 0.230 0.064 1.004 1.119 0.145 0.176 0.393 0.760 nan 0.267 3.019 0.468 0.024 0.017 0.457 0.276 0.010 0.115 0.730 0.314 2568 chr14 38050915 38070284 + 0 NA exon (NM_004496, exon 2 of 2) exon (NM_004496, exon 2 of 2) 3726 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 8.583 8.373 6.232 9.407 4.572 2.552 1.266 0.112 0.117 3.670 1.887 4.786 21.177 1.275 0.112 0.347 0.384 5.308 7.510 9.447 8.205 8.474 3.424 1.898 2.042 2.523 3.065 7.086 10.806 2.044 2.247 2.119 4.689 12.056 10.026 1.643 2.017 3.808 2.353 7.430 11.064 3.486 3.329 1.266 4.786 0.718 3.799 2.196 0.630 7238 chr7 30503652 30519261 + 0 NA intron (NM_006092, intron 1 of 13) intron (NM_006092, intron 1 of 13) 6937 NM_006092 10392 Hs.405153 NM_006092 ENSG00000106100 NOD1 CARD4|CLR7.1|NLRC1 nucleotide binding oligomerization domain containing 1 protein-coding 3.932 2.655 2.733 1.217 0.849 0.462 0.518 0.739 0.135 0.457 0.359 2.274 2.217 1.301 0.175 0.993 1.294 0.875 1.318 1.309 nan 1.232 0.392 1.490 1.653 2.369 nan nan nan 3.520 3.516 1.090 2.125 1.096 1.177 0.925 nan 2.130 1.283 0.642 0.587 0.225 0.352 0.518 2.274 0.315 0.725 1.494 0.554 5931 chr4 71567644 71576298 + 0 NA intron (NM_001130709, intron 1 of 11) intron (NM_001130709, intron 1 of 11) 1317 NM_001130709 22902 Hs.740904 NM_014961 ENSG00000018189 RUFY3 RIPX|SINGAR1|ZFYVE30 RUN and FYVE domain containing 3 protein-coding 3.017 2.144 2.007 4.293 3.485 1.832 2.704 0.972 0.262 0.904 0.375 2.477 6.072 2.073 0.131 4.143 4.893 2.809 4.705 4.308 3.494 7.352 2.737 5.507 6.108 1.246 1.875 7.264 11.018 3.513 3.242 1.806 4.982 0.279 0.512 3.375 3.681 1.280 0.724 2.323 5.322 0.033 2.135 2.704 2.477 0.370 2.725 1.737 1.216 3011 chr16 499142 509077 + 0 NA intron (NM_014700, intron 1 of 13) intron (NM_014700, intron 1 of 13) -20741 NM_001142272 9727 Hs.531642 NM_014700 ENSG00000090565 RAB11FIP3 CART1|Rab11-FIP3 RAB11 family interacting protein 3 protein-coding 0.879 nan 2.295 1.465 1.529 0.968 0.911 0.292 0.202 0.412 0.374 5.179 2.472 0.163 0.140 1.741 2.129 0.819 0.936 1.918 1.630 nan 0.794 1.356 1.449 0.809 nan 2.870 3.170 0.576 0.472 0.780 1.053 1.605 1.290 0.417 0.628 1.041 0.622 2.678 1.982 0.354 2.526 0.911 5.179 0.236 0.336 0.663 0.235 1129 chr10 65457820 65480895 + 0 NA Intergenic Intergenic -187522 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 1.121 nan 1.298 0.735 1.417 0.773 0.962 2.242 0.146 1.125 0.426 0.316 4.239 0.057 0.090 0.435 0.467 0.757 1.600 0.673 0.687 2.063 0.392 0.363 0.388 1.308 1.607 2.220 1.665 0.503 0.477 0.185 0.307 1.401 1.347 0.346 nan 2.225 1.088 5.120 1.061 0.483 0.086 0.962 0.316 0.101 3.784 0.180 0.289 1143 chr10 73827801 73841757 + 0 NA intron (NM_014767, intron 2 of 11) intron (NM_014767, intron 2 of 11) 13752 NM_001244950 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2 protein-coding 1.235 nan 0.983 0.044 0.376 0.195 0.220 0.106 0.034 0.423 0.209 0.216 0.333 0.016 0.075 0.715 1.732 0.241 0.426 0.636 0.696 6.021 1.725 0.284 0.368 0.571 0.915 0.425 nan 0.826 1.029 0.338 0.357 0.508 0.410 0.444 nan 0.741 0.625 0.255 0.205 0.231 0.187 0.220 0.216 0.587 0.043 0.241 0.217 6964 chr6 129952411 129969054 + 0 NA intron (NM_033515, intron 2 of 14) intron (NM_033515, intron 2 of 14) 70638 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 0.998 1.037 0.760 0.102 0.103 0.049 0.258 1.464 0.117 0.132 0.084 0.050 0.253 0.052 0.120 0.494 0.371 0.546 1.857 0.205 0.298 6.269 2.329 0.377 0.291 0.517 0.754 0.256 0.258 0.788 0.383 0.154 0.271 2.368 3.698 0.299 0.523 0.558 0.390 0.027 0.108 0.567 0.062 0.258 0.050 0.053 0.623 0.043 0.089 6802 chr6 51082588 51087552 + 0 NA Intergenic Intergenic 298631 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 0.848 0.849 nan 0.175 0.387 0.227 0.077 0.091 0.096 0.062 0.113 0.749 0.497 0.033 0.090 2.180 1.970 9.790 8.384 0.320 0.426 0.127 0.108 2.363 2.414 0.138 0.323 0.216 0.257 0.109 0.048 0.367 0.913 0.344 0.445 0.348 0.405 0.183 0.292 0.044 0.035 0.076 0.109 0.077 0.749 0.038 0.020 0.371 0.150 1261 chr10 133021984 133038350 + 0 NA intron (NM_174937, intron 4 of 11) intron (NM_174937, intron 4 of 11) 79817 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 0.523 0.646 0.630 0.102 3.779 1.803 0.187 0.037 0.019 0.172 0.186 1.405 0.324 0.007 0.067 0.210 0.091 0.054 0.086 0.484 0.571 1.596 0.658 0.048 0.067 0.065 0.118 0.471 0.526 0.139 0.105 0.174 0.243 0.732 0.622 0.090 0.087 1.259 0.721 0.292 0.163 0.228 0.010 0.187 1.405 0.218 0.013 0.054 0.053 6168 chr5 10348815 10359339 + 0 NA intron (NM_001270661, intron 1 of 22) CpG 326 NM_005885 10299 Hs.432862 NM_005885 ENSG00000145495 MARCH6 DOA10|MARCH-VI|RNF176|TEB4 membrane associated ring-CH-type finger 6 protein-coding nan nan nan 9.138 4.844 2.136 1.484 3.061 0.459 4.085 2.325 6.473 nan 2.767 0.125 4.281 4.450 4.648 5.637 9.780 9.323 6.068 2.897 4.971 5.187 nan 7.349 5.943 9.655 7.770 8.415 2.472 4.253 7.239 8.198 3.353 nan 3.956 2.391 2.717 4.483 1.507 1.234 1.484 6.473 1.161 2.487 1.474 1.119 7415 chr7 103552322 103558335 + 0 NA intron (NM_173054, intron 2 of 63) intron (NM_173054, intron 2 of 63) 74635 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding nan 0.617 0.762 0.161 0.166 0.160 0.122 0.095 0.081 0.419 0.165 0.278 0.375 0.037 0.124 0.628 0.312 7.229 2.853 0.228 0.363 0.491 0.244 0.603 0.521 0.473 0.537 0.339 0.295 0.481 0.203 0.197 0.251 0.259 0.330 0.380 nan 0.793 0.748 0.028 0.060 0.063 0.040 0.122 0.278 0.068 0.067 0.102 5058 chr21 10819337 10820145 + 0 NA Intergenic (GAATG)n|Satellite|Satellite 171202 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 23.727 27.820 25.232 6.201 8.281 5.573 4.583 1.865 18.090 4.268 8.356 2.361 10.622 2.731 11.667 16.811 5.769 7.199 7.508 13.473 21.270 7.779 5.530 10.022 9.421 14.698 20.176 10.154 7.866 20.034 4.632 5.569 10.067 5.856 11.142 8.424 11.681 7.393 10.978 0.691 7.337 2.751 2.314 4.583 2.361 2.196 1.542 1.396 2.808 3933 chr19 1587322 1593565 + 0 NA intron (NM_001281454, intron 1 of 6) AluJb|SINE|Alu 2317 NM_001281454 53615 Hs.178728 NM_003926 ENSG00000071655 MBD3 - methyl-CpG binding domain protein 3 protein-coding 4.961 2.497 7.139 4.272 4.937 2.410 3.844 1.798 0.231 3.036 1.265 6.063 5.940 2.799 0.121 5.868 5.371 5.168 7.075 8.992 9.076 4.320 1.898 9.794 9.822 4.336 5.820 5.025 nan 10.220 10.892 2.487 4.378 6.406 5.296 4.881 5.383 3.721 1.949 4.739 4.029 1.186 1.994 3.844 6.063 1.616 2.772 0.934 2.040 1770 chr12 3408577 3430125 + 0 NA Intergenic Intergenic -71164 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 1.132 nan nan 4.388 0.485 0.209 3.129 0.094 0.082 1.255 0.324 0.587 5.147 0.058 0.071 0.339 0.311 0.248 0.442 nan 0.903 8.489 2.160 0.540 0.484 0.223 0.477 4.876 4.854 0.421 0.312 0.353 0.459 1.996 2.383 0.354 nan 1.746 0.958 1.119 0.175 0.310 0.115 3.129 0.587 0.189 1.278 0.120 0.192 5622 chr3 157818973 157830202 + 0 NA promoter-TSS (NM_001163678) promoter-TSS (NM_001163678) -635 NM_001163678 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding nan 2.760 4.100 2.109 1.383 0.770 1.589 3.790 0.344 1.438 0.809 2.133 2.418 0.713 0.061 1.132 1.383 0.438 0.497 3.929 3.134 4.449 2.036 2.578 2.671 4.987 nan 2.499 3.527 4.701 4.180 0.661 1.380 2.118 2.379 2.135 3.191 1.524 1.118 0.951 1.318 0.412 0.892 1.589 2.133 0.654 1.230 0.664 0.878 7077 chr6 158651945 158669467 + 0 NA Intergenic SVA_F|Other|Other 71327 NM_207118 404672 Hs.356224 NM_207118 ENSG00000272047 GTF2H5 C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2 general transcription factor IIH subunit 5 protein-coding nan 1.268 2.054 1.615 0.583 0.323 1.514 0.619 0.128 0.510 0.252 1.598 2.680 0.985 0.103 2.897 3.330 1.906 2.391 1.792 nan 2.586 0.932 3.535 3.379 0.744 1.057 2.345 3.152 2.267 1.800 1.189 2.267 1.718 2.270 2.774 4.955 0.719 0.389 1.159 1.445 0.598 0.499 1.514 1.598 0.326 0.994 0.814 1.506 931 chr1 234719788 234768470 + 0 NA intron (NM_001077397, intron 1 of 1) intron (NM_001077397, intron 1 of 1) 1142 NM_182972 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 5.190 4.061 5.285 5.096 8.077 4.001 3.713 2.647 0.225 3.976 2.099 5.007 9.624 1.466 0.138 2.926 4.474 3.845 8.919 7.194 6.478 nan 1.516 4.630 4.565 2.719 3.639 nan 7.264 4.317 5.131 2.220 3.081 6.515 7.799 3.507 6.333 nan 1.321 2.540 2.316 2.303 2.268 3.713 5.007 1.028 1.701 1.706 2.860 2464 chr13 113606024 113658206 + 0 NA intron (NM_001112732, intron 1 of 29) intron (NM_001112732, intron 1 of 29) -1511 NM_001320816 23263 Hs.170422 NM_024979 ENSG00000126217 MCF2L ARHGEF14|DBS|OST MCF.2 cell line derived transforming sequence like protein-coding 1.093 nan 1.801 2.637 1.212 0.675 1.307 0.060 0.049 0.766 0.351 3.559 1.559 0.081 0.055 4.764 7.328 0.657 0.921 3.583 3.089 3.463 1.097 0.585 0.593 0.041 0.067 4.575 5.534 0.707 0.795 2.027 2.737 1.478 1.101 0.166 0.199 0.666 0.488 3.473 3.248 0.152 0.729 1.307 3.559 0.482 2.333 1.020 0.031 5109 chr21 36232564 36265482 + 0 NA intron (NM_001001890, intron 2 of 5) intron (NM_001001890, intron 2 of 5) 11964 NM_001122607 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 1.464 0.891 1.765 0.609 0.945 0.492 1.201 1.126 0.171 0.186 0.136 1.723 2.741 0.132 0.077 1.261 1.497 3.691 6.769 4.829 4.035 1.165 0.401 4.191 4.222 0.141 0.275 1.787 2.588 0.799 0.762 1.211 1.407 0.307 0.292 0.261 0.288 nan 0.503 2.241 2.740 0.020 0.248 1.201 1.723 0.222 0.416 0.329 0.072 4483 chr2 121790675 121799321 + 0 NA Intergenic HAL1|LINE|L1 240131 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 1.412 nan nan 0.106 0.200 0.166 0.241 0.080 0.074 0.059 0.152 0.186 2.096 0.038 0.065 0.491 0.428 0.202 0.405 0.459 0.693 0.964 0.259 0.587 0.587 0.469 1.008 4.319 4.929 1.245 1.652 0.278 0.374 0.984 0.713 0.208 0.339 1.121 0.773 9.311 1.522 0.383 0.192 0.241 0.186 0.621 0.106 0.205 0.128 5291 chr22 44565697 44577246 + 0 NA intron (NM_001137605, intron 1 of 13) intron (NM_001137605, intron 1 of 13) 2635 NM_001137605 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 0.778 nan 0.490 1.006 0.322 0.180 0.556 0.123 0.055 0.690 0.166 5.410 1.658 0.084 0.065 0.310 0.374 0.355 0.660 1.751 1.326 2.735 1.244 0.414 0.500 0.146 nan 2.577 2.855 nan 0.195 0.142 0.258 0.296 0.276 0.225 0.382 0.545 0.477 0.131 0.935 0.042 0.109 0.556 5.410 0.084 0.175 0.017 0.063 4758 chr2 235400992 235423479 + 0 NA Intergenic Intergenic -6538 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 2.439 nan 2.245 0.861 1.520 0.809 2.489 0.156 0.072 0.802 0.581 1.658 5.398 0.120 0.124 0.368 0.271 0.828 1.359 2.783 1.827 3.392 1.076 0.552 0.616 0.859 1.187 1.633 nan 1.179 1.534 0.376 0.536 1.592 1.664 1.165 2.620 1.330 0.749 1.510 1.026 0.574 0.551 2.489 1.658 0.323 1.223 0.101 0.403 8233 chr9 110044292 110048855 + 0 NA promoter-TSS (NM_001244713) promoter-TSS (NM_001244713) 239 NM_001244724 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 5.283 3.903 5.999 8.056 5.782 3.654 4.319 3.425 0.370 3.033 1.444 5.456 9.472 3.776 0.088 2.941 2.861 8.086 12.269 9.389 8.038 5.768 2.700 13.430 14.416 2.701 3.666 6.570 12.683 14.116 14.602 1.669 4.371 6.967 7.237 8.678 6.492 nan 1.471 1.631 2.489 1.903 3.386 4.319 5.456 1.336 2.634 1.293 1.982 7538 chr7 150658029 150686327 + 0 NA intron (NM_172056, intron 1 of 8) CpG 3224 NM_172056 3757 Hs.647099 NM_000238 ENSG00000055118 KCNH2 ERG-1|ERG1|H-ERG|HERG|HERG1|Kv11.1|LQT2|SQT1 potassium voltage-gated channel subfamily H member 2 protein-coding 1.620 0.840 nan 2.441 2.114 1.037 0.916 0.093 0.096 1.970 0.890 5.765 3.780 0.411 0.128 1.594 3.029 0.798 0.890 5.917 5.395 3.140 0.845 0.591 0.568 0.738 1.091 3.435 3.393 1.391 1.370 1.019 1.351 2.128 1.621 0.995 1.848 2.278 1.143 2.518 4.386 0.525 0.249 0.916 5.765 0.579 1.878 0.680 0.184 2025 chr12 75939480 75958834 + 0 NA Intergenic L2a|LINE|L2 -43739 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1, small subunit processome component homolog protein-coding nan 0.999 0.620 0.174 0.408 0.220 0.369 0.450 0.298 0.254 0.166 0.265 2.179 0.074 0.072 0.357 0.272 0.613 2.215 0.616 0.653 0.413 0.131 0.244 0.266 4.013 3.766 nan 0.842 0.837 0.471 0.208 0.306 0.190 0.190 0.204 0.439 nan 0.848 0.026 0.142 0.074 0.099 0.369 0.265 0.086 0.175 0.074 0.142 899 chr1 226611820 226626438 + 0 NA Intergenic AluJb|SINE|Alu -23328 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 1.435 nan 1.657 0.316 1.651 0.774 0.689 0.109 0.055 0.355 0.230 0.496 1.279 0.049 0.108 0.467 0.442 0.394 0.561 1.151 nan 1.906 0.431 0.415 0.487 0.460 0.830 0.906 0.956 1.040 0.947 0.136 0.155 1.183 0.916 0.433 0.611 1.243 0.751 1.656 0.367 0.485 4.993 0.689 0.496 0.172 0.093 0.020 0.184 3765 chr18 42318831 42326613 + 0 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 61859 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding nan 1.968 4.685 1.095 0.945 0.442 6.626 0.503 0.020 1.328 0.807 2.031 2.461 0.014 0.063 4.769 6.212 0.538 1.099 8.467 8.142 2.969 0.999 0.049 0.069 2.062 2.713 0.648 0.765 8.930 10.640 1.211 2.021 7.189 7.883 2.621 nan 6.465 3.575 1.522 0.207 3.424 5.321 6.626 2.031 1.931 0.770 0.610 2.052 1317 chr11 12762831 12811957 + 0 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 91425 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 1.059 nan 1.661 1.249 0.804 0.425 0.961 0.651 0.085 1.003 0.524 2.650 1.243 0.066 0.057 nan 1.235 0.831 1.200 2.740 2.778 2.047 0.724 0.873 0.918 1.390 nan 2.524 2.451 0.772 0.635 0.466 0.864 1.663 1.833 0.521 1.602 2.491 nan 1.885 1.967 0.366 0.439 0.961 2.650 0.130 0.260 0.377 0.316 1503 chr11 70839591 70864573 + 0 NA intron (NM_012309, intron 2 of 22) intron (NM_012309, intron 2 of 22) 83760 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding nan 0.625 0.467 0.070 1.473 0.816 0.174 0.042 0.051 0.047 0.056 0.316 2.086 0.057 0.092 0.531 0.582 0.227 0.327 1.062 1.104 0.210 0.072 0.309 0.422 0.187 0.289 0.419 0.570 0.334 0.295 0.398 0.478 0.073 0.093 0.284 0.507 0.560 0.443 4.411 0.125 0.019 0.032 0.174 0.316 0.109 0.146 0.133 0.094 3546 chr17 72798185 72839414 + 0 NA intron (NM_001321264, intron 9 of 9) intron (NM_001321264, intron 9 of 9) 37208 NR_103735 2905 Hs.436980 NM_000835 ENSG00000161509 GRIN2C GluN2C|NMDAR2C|NR2C glutamate ionotropic receptor NMDA type subunit 2C protein-coding 0.996 0.742 1.155 0.483 0.388 0.252 0.263 0.197 0.058 0.231 0.188 0.181 1.116 0.076 0.106 0.721 1.267 0.289 0.332 0.917 0.853 0.596 0.250 0.212 0.216 nan 4.943 1.093 1.221 1.267 1.224 0.485 0.696 0.415 0.360 0.507 0.738 nan 0.498 1.567 0.699 0.145 0.148 0.263 0.181 0.306 0.675 0.237 0.227 1252 chr10 126824264 126851787 + 0 NA intron (NM_001290214, intron 1 of 10) AmnSINE1|SINE|Deu 9662 NM_001290215 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding nan 2.435 1.715 2.096 1.628 0.816 0.641 0.137 0.053 0.889 0.342 1.727 7.319 0.915 0.078 1.996 2.587 1.579 3.186 1.222 1.061 1.963 0.651 1.939 1.902 0.755 1.243 4.643 6.209 1.040 1.052 1.247 2.926 1.127 1.384 1.760 1.707 1.696 0.882 1.795 2.065 0.284 0.743 0.641 1.727 0.320 1.603 1.698 0.683 5814 chr3 197451215 197464965 + 0 NA intron (NM_001145642, intron 1 of 20) SVA_D|Other|Other 5707 NM_001346873 9711 Hs.478868 NM_014687 ENSG00000145016 RUBCN KIAA0226|RUBICON|SCAR15 RUN and cysteine rich domain containing beclin 1 interacting protein protein-coding nan 1.995 1.438 0.974 0.913 0.440 0.988 0.937 0.223 0.477 0.297 0.808 nan 0.465 0.098 0.767 0.873 0.831 1.333 1.432 1.431 2.178 0.721 1.547 1.504 2.746 3.474 2.116 2.877 8.534 8.568 0.837 1.481 0.572 0.600 1.488 2.631 0.972 0.600 0.663 0.718 0.111 0.599 0.988 0.808 2.073 0.288 0.419 1.039 195 chr1 33615961 33621311 + 0 NA intron (NM_001330483, intron 4 of 4) intron (NM_001330483, intron 4 of 4) 23515 NM_001330483 55223 Hs.656006 NM_018207 ENSG00000116525 TRIM62 DEAR1 tripartite motif containing 62 protein-coding 3.953 nan 8.487 1.839 2.988 1.255 0.622 0.169 0.209 0.319 0.294 5.288 1.190 0.239 0.104 2.206 3.407 0.286 0.438 5.244 4.213 nan 0.082 0.564 0.569 1.325 2.083 1.588 1.776 nan 7.350 0.811 1.306 0.692 0.844 3.741 9.749 1.617 nan 0.516 0.503 0.161 6.050 0.622 5.288 0.743 0.121 0.429 4.309 5321 chr3 7244830 7250017 + 0 NA intron (NM_000844, intron 2 of 9) MARNA|DNA|TcMar-Mariner -311719 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 0.458 0.776 0.583 0.050 0.581 0.233 0.049 0.422 0.031 0.121 0.015 0.078 0.262 0.064 0.051 2.406 2.208 13.563 6.653 0.352 0.418 0.372 0.085 1.386 1.600 0.139 0.215 0.305 0.195 0.318 0.094 3.751 4.283 0.365 0.581 0.120 0.391 0.427 0.421 0.044 0.035 0.055 0.015 0.049 0.078 0.079 3.859 0.023 2355 chr13 79797575 79803710 + 0 NA Intergenic Intergenic 179714 NM_001286632 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding nan nan 0.656 0.658 0.629 0.364 3.978 0.113 0.026 0.336 0.190 1.201 1.183 0.035 0.080 0.653 0.326 0.266 0.375 0.824 0.649 12.937 4.483 0.096 0.179 0.258 0.304 0.596 0.375 0.277 0.157 0.218 0.302 0.922 0.813 0.335 0.549 0.437 0.240 0.072 0.569 0.063 0.232 3.978 1.201 0.048 0.083 0.130 0.081 1241 chr10 124604573 124612059 + 0 NA TTS (NR_037911) TTS (NR_037911) -2625 NM_022034 50624 Hs.647182 NM_022034 ENSG00000138161 CUZD1 ERG-1|ERG1|ITMAP1|UO-44 CUB and zona pellucida like domains 1 protein-coding nan 0.579 0.811 0.636 0.313 0.236 0.050 0.403 0.086 0.167 0.055 0.192 0.238 0.056 0.088 0.362 0.244 0.189 0.222 0.839 0.765 1.288 0.161 0.297 0.185 0.279 0.437 9.529 7.161 2.008 1.677 0.203 0.174 0.038 0.014 0.346 1.350 0.634 0.403 1.742 0.306 0.013 0.189 0.050 0.192 0.053 4.788 0.013 0.627 1441 chr11 61520061 61525925 + 0 NA intron (NM_013279, intron 1 of 25) intron (NM_013279, intron 1 of 25) 132 NM_013279 745 Hs.473109 NM_013279 ENSG00000124920 MYRF C11orf9|MRF|Ndt80|pqn-47 myelin regulatory factor protein-coding nan 0.786 0.718 0.161 10.167 5.123 0.341 0.289 0.054 0.068 0.117 0.249 0.664 0.566 0.142 0.840 1.126 1.070 1.967 1.291 1.195 1.144 0.394 0.819 0.872 0.699 0.925 0.582 1.004 0.542 0.317 3.560 6.863 0.469 0.825 0.369 0.742 0.441 0.302 0.076 0.151 0.049 0.041 0.341 0.249 0.106 0.140 5.879 0.042 647 chr1 167186973 167206915 + 0 NA intron (NM_002697, intron 1 of 15) intron (NM_002697, intron 1 of 15) 6821 NR_037163 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 3.182 nan 3.849 1.494 1.778 0.988 1.919 1.126 0.275 1.748 0.835 1.724 3.431 1.177 0.120 3.326 3.427 3.019 4.143 4.274 nan 2.962 1.668 3.106 3.287 2.228 2.924 2.751 nan 3.104 2.965 2.313 4.546 2.561 3.157 5.605 9.011 1.189 0.886 1.254 3.550 0.719 1.111 1.919 1.724 0.606 0.908 2.234 3.393 6793 chr6 46344644 46353743 + 0 NA intron (NM_001251973, intron 2 of 4) intron (NM_001251973, intron 2 of 4) -55564 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 0.907 3.118 0.611 0.910 1.321 0.740 0.726 0.217 0.049 0.277 0.198 0.183 1.664 0.024 0.114 1.400 1.289 6.098 8.949 0.719 0.535 0.113 0.085 0.477 0.528 0.167 0.259 4.086 nan 0.291 0.140 0.324 0.621 3.047 3.897 0.186 0.225 1.419 1.080 0.189 0.155 1.039 0.123 0.726 0.183 0.010 0.100 0.140 0.069 1571 chr11 92180438 92245236 + 0 NA intron (NM_001008781, intron 1 of 24) LTR53|LTR|ERVL 127575 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 0.600 nan 0.561 0.220 0.167 0.104 0.162 0.090 0.055 0.070 0.106 0.105 0.446 0.075 0.115 5.469 4.568 4.675 nan 0.546 0.644 0.134 0.069 6.214 6.290 0.817 1.070 0.770 0.642 0.434 0.193 3.353 4.927 0.684 0.793 0.260 nan 0.679 0.623 0.095 0.106 0.111 0.118 0.162 0.105 0.017 0.058 3.730 0.092 7421 chr7 105649199 105677574 + 0 NA intron (NM_152750, intron 14 of 18) intron (NM_152750, intron 14 of 18) 59729 NM_001301161 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding nan 0.699 1.209 0.090 0.364 0.224 0.860 1.247 0.119 0.299 0.224 0.303 0.641 0.065 0.163 0.576 0.645 0.307 0.358 0.492 0.549 0.683 0.198 0.164 0.149 3.632 4.356 0.262 0.313 0.506 0.395 0.370 0.679 0.420 0.550 0.533 nan 0.603 0.589 1.251 0.321 0.071 0.120 0.860 0.303 0.464 0.032 0.250 0.192 3842 chr18 55861432 55911131 + 0 NA intron (NM_001144970, intron 1 of 28) MIR3|SINE|MIR -2473 NM_001144966 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding nan 1.532 1.018 0.494 0.632 0.342 0.585 0.500 0.061 0.148 0.113 0.474 0.829 0.055 0.083 0.627 0.747 0.963 3.515 0.965 1.021 1.944 0.769 0.812 0.829 0.397 0.617 2.467 2.910 0.627 0.486 0.339 0.545 0.763 1.765 0.457 0.981 nan 1.494 0.496 0.429 0.155 0.286 0.585 0.474 0.239 0.112 0.221 0.260 7472 chr7 129249997 129255867 + 0 NA intron (NM_005011, intron 1 of 10) intron (NM_005011, intron 1 of 10) 1389 NM_001293164 4899 Hs.654363 NM_005011 ENSG00000106459 NRF1 ALPHA-PAL nuclear respiratory factor 1 protein-coding 5.456 1.849 3.321 2.920 3.697 1.817 4.832 2.538 0.209 2.770 1.275 7.281 4.881 4.574 0.154 6.330 5.356 8.139 9.079 7.428 7.292 6.639 2.948 11.069 10.548 3.646 4.607 3.903 7.228 6.458 6.628 5.613 9.558 4.817 4.497 6.084 5.130 3.565 2.266 2.676 3.397 0.714 2.367 4.832 7.281 1.137 1.985 1.377 0.890 1940 chr12 51610016 51621194 + 0 NA Intergenic AluSx|SINE|Alu -4066 NM_001330422 5463 Hs.555886 NM_002702 ENSG00000184271 POU6F1 BRN5|MPOU|TCFB1 POU class 6 homeobox 1 protein-coding nan 1.818 1.544 0.902 1.256 0.616 1.164 0.832 0.221 1.280 0.764 1.693 2.472 1.282 0.098 nan 6.941 1.902 2.268 3.449 nan 3.022 1.085 4.894 5.100 1.637 nan 2.189 nan 2.576 2.732 1.837 3.394 2.225 1.731 1.635 2.028 1.798 1.258 0.534 1.990 0.390 1.039 1.164 1.693 0.532 1.151 2.750 0.666 640 chr1 165407426 165434821 + 0 NA Intergenic Intergenic -6531 NM_006917 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 1.272 nan 1.189 0.729 0.551 0.248 0.513 0.154 0.071 0.149 0.209 0.124 2.001 0.032 0.109 0.465 0.414 0.404 0.876 0.673 nan 0.207 0.120 0.130 0.127 0.224 0.364 1.415 nan 0.948 0.786 0.393 0.615 1.232 2.889 1.774 4.344 0.408 0.444 0.065 0.189 0.284 0.241 0.513 0.124 0.272 0.037 0.094 2.160 6139 chr5 2794218 2803155 + 0 NA Intergenic AluSz|SINE|Alu 46441 NR_122125 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 0.420 0.804 0.852 0.158 1.739 0.884 0.338 0.172 0.127 0.080 0.145 6.146 0.649 0.018 0.115 0.321 0.209 0.222 nan 5.778 7.305 0.111 0.095 0.082 0.030 0.202 0.287 nan 0.168 nan 2.185 0.181 0.229 0.076 0.124 0.125 0.163 0.219 nan 0.742 0.478 0.398 0.338 6.146 0.229 0.034 0.089 1384 chr11 35235126 35261420 + 0 NA intron (NM_001202556, intron 7 of 7) intron (NM_001202556, intron 7 of 7) 87856 NM_001202556 960 Hs.502328 NM_000610 ENSG00000026508 CD44 CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1 CD44 molecule (Indian blood group) protein-coding 0.770 1.409 nan 0.344 0.217 0.108 1.622 0.272 0.129 0.148 0.171 0.087 0.792 0.038 0.118 0.486 0.214 1.271 3.878 0.365 0.418 0.411 0.163 0.285 0.272 0.502 0.758 0.234 0.235 0.438 0.266 0.180 0.263 0.420 0.417 0.361 nan 0.641 0.528 0.201 0.278 0.127 0.063 1.622 0.087 0.030 0.027 0.030 0.089 5205 chr22 24127574 24133479 + 0 NA intron (NM_001317946, intron 1 of 8) Tigger8|DNA|TcMar-Tigger 1408 NM_001007468 6598 Hs.534350 NM_003073 ENSG00000099956 SMARCB1 BAF47|CSS3|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 protein-coding 2.610 nan 3.319 1.926 2.986 1.709 2.015 1.584 0.166 1.227 0.329 3.922 6.900 1.897 0.123 3.407 3.465 3.498 5.336 5.029 5.735 3.211 1.536 7.185 7.642 3.082 4.423 3.810 5.561 4.320 3.749 2.121 3.254 2.448 3.205 2.797 2.914 5.998 3.228 1.391 3.144 0.694 1.775 2.015 3.922 1.255 1.992 1.195 0.887 6800 chr6 49877253 49883543 + 0 NA Intergenic Intergenic -35589 NM_001205220 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 0.775 1.236 1.937 0.668 1.601 0.878 1.380 0.181 0.127 0.153 0.104 0.800 2.532 0.066 0.120 2.728 1.822 7.099 2.791 0.490 0.647 0.219 0.124 2.042 2.177 0.268 0.354 2.853 nan 0.213 0.124 1.405 2.299 0.286 0.251 0.462 1.454 0.357 0.537 0.312 1.164 0.074 0.151 1.380 0.800 0.179 0.695 1.030 0.275 3440 chr17 46566271 46591202 + 0 NA Intergenic Intergenic 29536 NM_002144 3211 Hs.99992 NM_002144 ENSG00000120094 HOXB1 HCFP3|HOX2|HOX2I|Hox-2.9 homeobox B1 protein-coding 0.765 4.549 nan 2.316 2.977 1.550 0.108 0.099 0.077 3.099 1.360 2.755 8.717 0.121 0.123 0.366 0.353 0.118 0.214 1.970 nan 3.062 1.961 0.488 0.582 0.232 0.348 2.505 nan 0.461 0.146 0.149 0.269 3.021 2.578 0.136 0.242 3.282 1.562 1.311 3.306 1.076 0.022 0.108 2.755 0.023 1.223 0.028 0.045 3426 chr17 43441498 43463273 + 0 NA Intergenic AluSz|SINE|Alu 50627 NM_199282 201176 Hs.205326 NM_174919 ENSG00000159314 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 0.929 1.247 nan 0.511 1.096 0.648 0.696 1.072 0.332 0.296 0.192 0.350 0.654 5.555 0.272 0.544 0.612 1.072 3.479 0.967 nan 2.389 0.531 0.670 0.703 0.288 0.552 1.207 nan 0.883 0.533 0.460 0.460 0.308 0.554 0.384 0.709 0.977 0.718 0.053 0.131 0.044 0.080 0.696 0.350 0.103 0.107 0.105 0.136 8334 chr9 139079370 139100723 + 0 NA intron (NM_178138, intron 5 of 5) intron (NM_178138, intron 5 of 5) 4973 NM_014564 8022 Hs.148427 NM_014564 ENSG00000107187 LHX3 CPHD3|LIM3|M2-LHX3 LIM homeobox 3 protein-coding nan 0.737 0.746 0.252 0.464 0.229 0.642 0.087 0.075 0.102 0.054 0.185 0.767 0.139 0.053 0.237 0.290 0.137 0.137 0.555 0.675 nan 0.258 0.051 0.069 0.085 0.225 0.365 0.427 0.940 0.846 0.364 0.309 0.434 0.470 0.733 1.279 0.276 0.253 0.559 0.264 0.099 6.768 0.642 0.185 0.317 0.033 0.065 0.075 3867 chr18 60920322 60941323 + 0 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 55791 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 0.897 1.239 3.338 2.290 2.453 1.347 0.432 0.183 0.092 0.812 0.294 3.017 4.188 0.036 0.124 1.770 2.679 3.394 3.340 7.484 7.084 4.091 1.748 1.072 nan 0.305 nan 4.020 4.085 0.830 0.584 1.997 2.539 4.913 6.400 0.150 0.188 6.121 3.470 3.730 0.754 1.106 0.665 0.432 3.017 0.264 0.430 2.140 0.036 8017 chr9 2416683 2428170 + 0 NA Intergenic Intergenic -199348 NM_001018056 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 0.837 2.275 1.791 0.372 2.196 1.194 1.185 0.171 0.085 2.525 0.759 0.877 3.974 0.068 0.071 0.257 0.136 0.203 0.631 0.936 0.987 5.402 2.377 0.271 0.268 1.108 1.652 0.742 1.525 0.477 0.222 0.091 0.184 3.245 3.151 0.210 nan 3.669 2.474 0.641 1.055 0.797 0.069 1.185 0.877 0.102 0.079 0.078 0.054 5550 chr3 133190412 133198255 + 0 NA TTS (NM_003571) TTS (NM_003571) 15657 NR_135276 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 1.698 nan nan 1.433 10.000 4.807 0.718 0.359 0.164 0.944 0.537 0.497 4.838 0.042 0.056 0.367 0.181 0.647 2.588 0.692 0.956 5.122 1.192 0.696 0.727 1.598 1.795 6.407 5.198 nan 1.751 0.192 0.272 0.720 1.409 0.984 3.165 1.821 1.053 6.813 5.258 0.255 0.140 0.718 0.497 1.857 3.172 0.051 0.962 785 chr1 202916998 202938988 + 0 NA promoter-TSS (NM_001290629) promoter-TSS (NM_001290629) -293 NM_001290629 51094 Hs.5298 NM_015999 ENSG00000159346 ADIPOR1 ACDCR1|CGI-45|CGI45|PAQR1|TESBP1A adiponectin receptor 1 protein-coding 2.483 3.089 2.721 1.990 2.673 1.504 1.678 0.696 0.110 1.120 0.619 2.934 4.311 0.517 0.096 2.352 2.839 2.131 3.286 4.928 4.601 3.830 2.222 nan nan 1.294 1.698 2.935 4.195 1.098 0.802 0.607 0.993 1.665 1.714 2.408 5.717 1.963 0.927 0.777 3.260 0.295 0.885 1.678 2.934 0.212 0.756 0.248 3.370 2682 chr14 76929353 76940673 + 0 NA intron (NM_004452, intron 5 of 10) MIR|SINE|MIR 97323 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 1.153 0.688 0.843 0.966 0.353 0.085 0.988 0.182 0.056 0.041 0.103 1.062 0.551 0.038 0.097 0.308 0.289 0.170 0.205 5.387 6.072 0.123 0.064 0.432 0.463 0.611 0.968 1.414 nan 1.053 0.582 0.215 0.309 0.163 0.138 0.587 2.001 0.822 nan 0.400 0.772 0.042 0.225 0.988 1.062 0.173 0.106 0.044 0.340 339 chr1 61582202 61614305 + 0 NA intron (NM_001145511, intron 2 of 10) intron (NM_001145511, intron 2 of 10) 50273 NM_001134673 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 1.162 1.461 nan 0.419 1.369 0.757 0.342 1.784 0.166 0.884 0.459 0.186 0.950 0.105 0.128 0.568 0.975 0.692 1.121 0.507 0.563 0.133 0.077 0.300 0.285 nan nan 3.019 nan 0.703 0.516 0.275 0.438 1.391 2.354 0.206 0.475 2.351 1.222 2.136 0.643 0.330 0.362 0.342 0.186 0.136 0.958 0.145 0.073 6355 chr5 88075136 88084518 + 0 NA intron (NM_001193347, intron 4 of 11) intron (NM_001193347, intron 4 of 11) 39917 NM_001193349 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 0.687 1.435 0.595 0.169 0.203 0.240 0.327 1.550 0.051 0.200 0.178 0.102 1.040 0.569 0.115 0.530 0.635 7.076 10.710 0.459 0.339 0.531 0.256 0.266 0.334 1.912 2.059 0.414 0.436 0.310 0.148 1.016 2.092 0.126 0.267 0.243 nan 0.416 0.308 0.077 0.370 0.010 0.009 0.327 0.102 0.031 0.076 2.322 0.130 3677 chr18 19584138 19589021 + 0 NA Intergenic Intergenic 162350 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 0.709 0.614 0.802 0.198 0.227 0.033 0.373 0.092 0.163 0.121 0.078 0.073 0.354 0.134 0.164 0.402 0.231 0.267 0.547 0.302 0.513 14.363 4.816 0.162 0.161 0.141 0.244 0.055 0.157 0.371 0.161 0.141 0.186 0.124 0.164 0.138 0.270 0.255 0.422 0.034 0.050 0.059 0.030 0.373 0.073 0.031 0.041 0.076 7574 chr8 1770887 1817308 + 0 NA intron (NM_001308153, intron 3 of 29) intron (NM_001308153, intron 3 of 29) 21955 NM_014629 9639 Hs.98594 NM_014629 ENSG00000104728 ARHGEF10 GEF10|SNCV Rho guanine nucleotide exchange factor 10 protein-coding 0.699 0.760 0.572 0.862 0.735 0.407 0.399 0.272 0.062 0.417 0.346 7.502 0.149 0.486 0.124 0.536 0.801 0.634 0.834 3.356 3.233 2.668 1.062 0.587 0.602 0.198 0.324 0.338 0.473 nan 0.423 0.312 0.442 0.638 0.568 0.315 0.511 0.819 0.622 0.336 0.437 0.102 0.015 0.399 7.502 0.065 0.201 0.121 0.162 5572 chr3 139737822 139756129 + 0 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 92948 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 1.374 nan nan 0.134 0.566 0.315 0.316 0.164 0.218 0.232 0.221 0.111 0.550 0.024 0.064 0.300 0.203 0.449 0.392 0.498 0.455 2.123 0.692 0.179 0.214 2.595 3.740 0.220 0.249 nan 1.654 0.272 0.450 0.903 0.920 0.549 1.034 0.583 0.603 1.255 0.331 0.349 0.195 0.316 0.111 0.425 0.099 0.092 0.311 3333 chr17 26821587 26841914 + 0 NA Intergenic MIRb|SINE|MIR -19209 NM_003593 8456 Hs.58611 NM_003593 ENSG00000109101 FOXN1 FKHL20|RONU|WHN forkhead box N1 protein-coding nan nan nan 0.151 0.348 0.213 0.176 0.095 0.040 0.077 0.066 0.153 2.319 0.069 0.094 0.743 0.771 0.283 0.511 0.517 0.484 1.055 0.295 0.437 0.428 0.314 0.562 1.390 1.246 7.131 7.448 0.822 0.918 0.412 0.294 1.357 nan 1.481 0.889 0.117 0.357 0.042 0.063 0.176 0.153 1.959 0.059 0.183 1.872 1956 chr12 54365968 54433269 + 0 NA Intergenic CpG -3272 NM_022658 3224 Hs.664500 NM_022658 ENSG00000037965 HOXC8 HOX3|HOX3A homeobox C8 protein-coding nan 1.432 1.299 0.085 0.347 0.189 0.186 1.100 0.128 0.221 0.157 0.263 1.696 2.075 0.069 nan 13.381 5.793 8.152 0.517 nan 0.250 0.129 4.553 4.767 1.461 nan 1.110 nan 0.997 0.737 7.441 14.167 1.716 1.790 1.463 2.885 0.549 0.489 1.240 4.574 0.635 0.016 0.186 0.263 0.457 0.673 6.895 0.881 1527 chr11 75293563 75307536 + 0 NA intron (NM_033063, intron 3 of 3) MIRc|SINE|MIR 27448 NM_001235 871 Hs.596449 NM_001235 ENSG00000149257 SERPINH1 AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46 serpin family H member 1 protein-coding nan 2.286 1.513 1.127 1.223 0.492 1.779 0.188 0.046 0.706 0.376 2.080 2.096 0.939 0.086 1.167 1.737 0.243 0.311 3.628 3.090 3.673 1.159 2.850 3.058 0.749 1.085 6.196 5.581 1.575 1.806 1.226 1.466 1.876 1.289 0.550 0.799 2.435 1.408 4.103 2.967 0.417 0.364 1.779 2.080 0.241 1.728 0.233 0.213 1132 chr10 71326829 71340701 + 0 NA promoter-TSS (NM_020999) promoter-TSS (NM_020999) -555 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 0.334 nan 11.071 0.102 0.153 0.092 0.139 0.064 0.023 0.057 0.047 0.439 0.573 0.031 0.072 0.226 0.244 0.074 0.096 5.604 5.167 0.170 0.074 0.049 0.032 0.061 0.109 0.230 nan 0.158 0.077 0.091 0.087 0.054 0.080 0.089 nan 0.188 0.197 0.032 0.013 0.021 0.023 0.139 0.439 0.028 0.014 0.021 4308 chr2 43445264 43455678 + 0 NA 3' UTR (NM_006887, exon 2 of 2) 3' UTR (NM_006887, exon 2 of 2) 3274 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 5.549 nan 7.088 3.180 2.326 1.156 2.559 4.003 0.278 2.029 0.654 2.954 4.308 5.531 0.190 2.507 2.651 4.648 8.234 nan 2.652 4.342 1.705 5.770 5.694 2.942 4.072 5.456 8.479 5.196 5.889 1.966 3.309 1.946 1.691 5.635 5.979 nan 1.257 2.080 2.499 0.720 1.866 2.559 2.954 1.523 3.036 1.993 2.783 7856 chr8 104305366 104314467 + 0 NA promoter-TSS (NM_001164615) promoter-TSS (NM_001164615) -745 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 6.257 nan nan 2.300 2.362 1.233 1.237 3.710 0.513 0.565 0.263 2.613 3.820 0.418 0.067 1.112 1.339 2.942 4.129 4.152 4.164 nan 2.050 3.767 3.803 3.007 nan 2.368 nan nan 2.694 1.610 2.803 5.832 6.582 1.819 nan 2.539 1.225 0.604 0.324 1.414 2.156 1.237 2.613 0.267 3.243 0.818 0.406 4121 chr19 48421033 48463194 + 0 NA promoter-TSS (NR_024218) promoter-TSS (NR_024218) -685 NR_024218 100170219 Hs.560634 NR_024218 SNAR-C4 - small ILF3/NF90-associated RNA C4 snRNA 1.582 1.487 1.617 0.277 0.871 0.533 0.503 0.182 0.309 0.150 0.268 0.173 0.524 12.007 0.790 0.551 0.379 0.255 0.254 0.547 0.659 1.118 0.377 0.537 0.496 0.584 0.955 0.573 0.628 1.054 0.365 0.341 0.455 0.193 0.360 0.759 1.589 0.681 0.742 0.074 0.166 0.095 0.109 0.503 0.173 0.124 0.344 0.077 0.280 4315 chr2 44993358 45006785 + 0 NA TTS (NM_024766) TTS (NM_024766) 168575 NR_103785 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 2.134 nan 1.667 1.959 4.529 2.446 0.981 0.102 0.060 1.094 0.485 3.607 1.369 0.072 0.105 0.322 0.416 0.407 0.631 nan 4.332 3.382 1.205 0.539 0.418 0.484 0.725 2.404 2.842 2.214 1.845 0.297 0.504 4.613 5.165 2.481 8.652 nan 1.630 0.674 1.548 1.793 0.231 0.981 3.607 0.100 0.349 0.140 3.386 5583 chr3 141818403 141848832 + 0 NA intron (NM_001178139, intron 1 of 12) HAL1b|LINE|L1 34769 NM_001178139 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 1.287 nan nan 0.200 0.515 0.258 0.102 0.251 0.185 0.318 0.313 0.192 0.265 0.068 0.108 0.315 0.264 0.305 0.450 0.378 0.518 nan 0.322 0.316 0.265 5.588 6.104 0.296 nan nan 0.887 0.240 0.355 0.074 0.106 0.931 1.583 0.891 0.645 0.082 0.076 0.025 0.136 0.102 0.192 0.172 0.017 0.088 0.297 7642 chr8 33453458 33458824 + 0 NA promoter-TSS (NM_001305116) promoter-TSS (NM_001305116) -826 NM_001305116 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 1.846 3.076 nan 2.951 2.119 0.721 5.555 0.097 0.061 2.983 1.405 3.991 5.364 0.042 0.132 1.035 2.123 1.537 1.837 13.777 12.677 8.229 2.976 0.300 0.451 1.644 2.103 3.580 4.049 6.977 10.248 1.522 2.157 4.809 2.410 0.842 1.711 7.754 4.741 4.274 4.142 0.745 1.064 5.555 3.991 2.043 1.693 1.144 0.563 3118 chr16 31083301 31086975 + 0 NA promoter-TSS (NM_014699) promoter-TSS (NM_014699) -315 NM_001172668 79759 Hs.102928 NM_024706 ENSG00000167394 ZNF668 - zinc finger protein 668 protein-coding 9.051 4.012 6.546 8.275 6.044 3.315 4.963 3.531 0.393 2.544 0.914 7.765 19.456 5.238 0.102 5.978 7.515 8.489 11.920 9.946 8.618 16.280 5.215 11.476 11.815 6.210 8.559 14.832 16.880 8.843 10.036 3.628 7.848 9.868 10.963 4.232 5.892 5.509 2.608 4.922 3.854 1.767 3.096 4.963 7.765 2.808 6.134 2.858 1.918 4141 chr19 50429899 50434334 + 0 NA promoter-TSS (NM_001193646) promoter-TSS (NM_001193646) 157 NM_012068 22809 Hs.9754 NM_012068 ENSG00000169136 ATF5 ATFX|HMFN0395 activating transcription factor 5 protein-coding 7.995 3.655 6.328 6.097 16.424 9.602 5.962 2.631 0.685 3.492 1.478 6.823 8.760 8.611 0.285 8.091 8.367 6.774 8.896 14.457 12.978 10.653 6.283 20.352 21.398 7.057 8.821 9.900 14.460 11.868 12.940 9.251 13.670 10.421 11.638 8.372 8.998 6.124 3.439 7.270 9.261 2.578 5.573 5.962 6.823 2.705 3.381 4.186 4.019 6313 chr5 71076487 71087992 + 0 NA Intergenic Intergenic 67249 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 0.966 nan 1.171 0.180 1.865 0.961 0.695 0.204 0.070 0.203 0.120 0.270 1.482 0.087 0.112 0.424 0.451 0.227 0.313 0.676 0.674 10.259 3.615 0.180 0.173 0.600 nan 0.819 0.677 1.544 1.385 0.282 0.301 2.214 2.883 0.622 1.269 1.206 0.759 0.377 0.649 0.447 0.110 0.695 0.270 0.050 0.362 0.086 0.662 1351 chr11 24393453 24408736 + 0 NA Intergenic L1MA5A|LINE|L1 -117422 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 0.512 0.871 0.628 0.080 0.145 0.074 0.049 0.079 0.094 0.093 0.115 0.023 0.324 0.022 0.101 0.510 0.291 0.304 0.330 0.241 0.317 0.089 0.052 0.220 0.222 3.418 3.996 0.222 0.222 0.225 0.071 0.137 0.173 0.129 0.158 0.137 0.195 0.484 0.407 0.233 0.164 0.012 0.010 0.049 0.023 0.038 0.020 0.078 0.025 164 chr1 27840743 27872847 + 0 NA Intergenic AluSx3|SINE|Alu -40097 NM_001201404 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WAS protein family member 2 protein-coding 2.972 3.329 nan 5.174 0.993 0.559 2.478 0.299 0.095 1.558 0.864 0.963 3.410 0.200 0.102 1.404 2.703 0.412 0.720 5.422 5.646 3.120 1.098 1.175 1.454 3.098 4.300 4.736 6.523 2.469 2.764 1.149 1.850 2.770 2.180 2.867 4.710 3.198 1.648 5.570 3.675 0.927 0.435 2.478 0.963 1.390 2.107 1.749 1.356 7803 chr8 95955082 95973654 + 0 NA Intergenic Intergenic -2753 NM_001135733 94241 Hs.492261 NM_033285 ENSG00000164938 TP53INP1 SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1 tumor protein p53 inducible nuclear protein 1 protein-coding nan 1.361 3.032 1.276 1.386 0.922 0.759 1.212 0.228 0.263 0.280 2.257 4.842 0.239 0.118 1.268 1.284 1.625 nan 2.865 2.876 2.605 0.782 1.183 1.069 2.051 2.776 4.113 6.611 0.900 0.670 1.053 2.262 2.175 2.460 0.811 1.795 0.731 0.495 1.567 0.259 0.856 1.289 0.759 2.257 0.470 0.966 1.110 0.266 5030 chr20 60715642 60724789 + 0 NA intron (NM_198935, intron 1 of 10) MIR|SINE|MIR 1439 NR_125981 26039 Hs.154429 NM_015558 ENSG00000184402 SS18L1 CREST|LP2261 SS18L1, nBAF chromatin remodeling complex subunit protein-coding 3.784 3.656 2.333 2.675 2.678 1.667 3.014 2.343 0.262 1.250 0.642 3.937 5.236 2.542 0.122 4.782 nan 2.858 3.822 4.803 5.316 3.923 2.127 10.871 10.776 1.797 2.720 3.700 5.777 3.609 4.002 3.430 7.068 1.685 1.610 3.383 2.370 1.717 0.997 1.669 3.335 0.465 1.613 3.014 3.937 0.553 3.137 1.256 0.745 2898 chr15 60766910 60772108 + 0 NA intron (NM_001276385, intron 2 of 8) intron (NM_001276385, intron 2 of 8) 1850 NM_001276385 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 3.947 2.837 nan 2.442 3.607 1.354 2.892 1.364 0.172 2.148 0.872 4.262 6.423 2.163 0.082 4.052 3.758 10.318 11.204 3.784 3.595 nan 2.033 6.243 6.594 4.536 5.279 4.431 7.046 7.566 7.088 3.086 4.610 5.404 5.317 4.078 4.238 2.563 1.652 1.373 1.472 0.750 0.766 2.892 4.262 1.109 1.997 1.137 1.091 3139 chr16 51177752 51187658 + 0 NA intron (NM_002968, intron 1 of 2) intron (NM_002968, intron 1 of 2) 1803 NM_001127892 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding nan nan nan 5.637 1.540 0.834 4.383 0.076 0.064 2.840 1.209 1.758 4.512 0.099 0.068 0.304 0.215 0.216 0.283 3.342 3.049 1.430 0.479 2.211 2.189 0.212 nan nan nan nan 0.110 0.231 0.327 0.114 0.058 5.940 9.141 nan 1.393 0.500 0.116 0.010 3.331 4.383 1.758 0.038 0.010 0.121 2.194 1364 chr11 31657399 31663384 + 0 NA intron (NM_001288725, intron 7 of 10) intron (NM_001288725, intron 7 of 10) 129115 NM_019040 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 0.948 0.968 nan 0.162 0.292 0.182 0.148 0.160 0.081 0.065 0.229 0.020 0.203 0.133 0.443 0.406 0.721 0.445 0.295 0.536 0.433 0.192 0.248 0.208 7.246 7.009 0.203 0.201 0.938 0.527 0.295 0.304 0.260 0.292 0.345 nan 0.601 0.470 0.018 0.030 0.071 0.172 0.148 0.020 0.523 0.034 0.049 0.228 4926 chr20 32132904 32191324 + 0 NA intron (NM_005093, intron 2 of 11) intron (NM_005093, intron 2 of 11) 11943 NM_005093 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 translocation partner 2 protein-coding 1.583 2.325 3.796 3.079 2.413 1.180 0.699 0.763 0.190 1.621 0.980 1.331 4.223 0.123 0.132 1.562 1.715 0.814 0.864 3.604 nan 5.579 2.103 2.380 2.423 2.805 3.336 2.752 3.603 2.961 2.060 0.842 1.073 2.503 3.471 1.152 nan 1.498 0.710 0.287 1.172 0.829 0.657 0.699 1.331 0.237 0.648 0.347 0.873 3390 chr17 37754916 37794597 + 0 NA Intergenic Intergenic -8421 NM_032192 84152 Hs.286192 NM_032192 ENSG00000131771 PPP1R1B DARPP-32|DARPP32 protein phosphatase 1 regulatory inhibitor subunit 1B protein-coding nan 1.047 1.755 0.520 2.145 1.114 0.752 0.415 0.126 0.647 0.423 1.016 1.765 0.377 0.073 3.722 5.985 0.698 0.975 nan 2.400 1.633 0.610 2.507 2.650 1.032 1.559 2.594 3.392 nan 3.258 1.034 1.528 0.920 0.789 0.676 0.972 1.370 0.755 0.572 0.933 0.270 0.378 0.752 1.016 1.185 0.580 0.934 0.251 6121 chr5 498248 539242 + 0 NA intron (NM_004174, intron 1 of 16) intron (NM_004174, intron 1 of 16) 5804 NM_004174 6550 Hs.658120 NM_004174 ENSG00000066230 SLC9A3 DIAR8|NHE-3|NHE3 solute carrier family 9 member A3 protein-coding 0.491 1.870 1.078 0.511 0.623 0.203 0.383 0.155 0.110 0.152 0.137 0.710 2.673 0.087 0.089 0.329 0.242 0.306 nan 1.379 1.409 0.481 0.137 0.093 0.127 0.154 0.380 nan 0.616 nan 0.262 0.250 0.293 0.188 0.227 0.048 0.077 1.359 nan 3.434 1.417 0.021 0.048 0.383 0.710 0.224 0.129 0.067 0.027 7168 chr7 13933848 13950921 + 0 NA intron (NM_004956, intron 12 of 13) intron (NM_004956, intron 12 of 13) 83755 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding nan 1.494 nan 0.186 1.098 0.586 0.554 0.622 0.056 1.829 0.966 0.762 1.974 0.072 0.122 nan 0.686 2.048 2.232 0.722 0.885 1.093 0.441 0.330 0.364 0.923 1.247 0.727 0.560 0.278 0.114 0.330 0.243 2.316 3.457 0.224 0.274 0.719 0.469 0.081 0.346 0.568 0.116 0.554 0.762 0.062 0.179 0.052 0.109 8223 chr9 101102023 101109304 + 0 NA intron (NM_005458, intron 13 of 18) intron (NM_005458, intron 13 of 18) -87660 NM_018421 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 1.541 0.837 1.722 0.144 0.397 0.153 0.104 0.031 0.044 0.109 0.104 0.066 0.352 0.015 0.085 0.296 0.160 0.125 0.184 0.292 0.353 0.266 0.057 0.093 0.061 0.376 0.811 0.232 nan 8.937 9.217 0.087 0.127 0.884 0.682 0.925 3.014 nan 0.546 0.015 0.037 0.209 0.139 0.104 0.066 0.399 0.014 0.055 1.678 7127 chr7 1979751 1992671 + 0 NA intron (NM_001013836, intron 16 of 18) intron (NM_001013836, intron 16 of 18) -6025 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 MAD1 mitotic arrest deficient like 1 protein-coding 1.358 1.041 1.365 1.187 0.339 0.139 0.734 0.296 0.038 0.220 0.207 0.555 nan 0.163 0.102 0.544 0.793 0.233 nan 1.229 1.204 nan 0.526 0.695 0.804 0.384 0.789 nan 3.744 0.399 0.393 0.360 0.358 0.353 0.438 0.457 0.629 0.889 0.593 1.161 0.355 0.088 0.198 0.734 0.555 0.098 2.528 0.077 0.162 4602 chr2 175109185 175114876 + 0 NA intron (NM_001328688, intron 1 of 10) AluSz6|SINE|Alu 1368 NM_001328688 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 3.675 1.907 3.283 2.151 2.618 1.775 2.715 1.370 0.141 1.239 0.891 2.385 4.838 1.467 0.150 2.700 2.534 3.153 4.593 2.905 2.514 3.099 1.298 6.450 6.229 3.715 4.281 10.798 16.847 3.851 4.625 1.797 2.877 1.170 0.990 4.499 4.153 1.866 0.981 1.350 0.904 0.116 0.690 2.715 2.385 0.978 0.821 0.889 1.551 3667 chr18 12391185 12421570 + 0 NA Intergenic MIRb|SINE|MIR -1518 NM_001142405 10650 Hs.514718 NM_006553 ENSG00000141391 PRELID3A C18orf43|HFL-EDDG1|SLMO1 PRELI domain containing 3A protein-coding 1.637 1.630 1.591 1.320 1.139 0.634 0.693 0.326 0.196 0.527 0.269 1.901 1.684 1.013 0.148 2.096 2.160 0.556 0.939 2.869 2.690 5.370 1.907 1.881 1.837 0.880 1.380 0.965 1.677 1.978 2.251 0.683 1.064 1.765 1.721 1.977 1.991 2.560 1.322 0.934 0.343 0.351 0.824 0.693 1.901 0.442 0.472 0.423 1.138 3782 chr18 45720381 45764119 + 0 NA intron (NM_001318841, intron 2 of 4) MER4D1|LTR|ERV1 -78570 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding nan 2.008 0.803 1.439 0.484 0.238 1.416 0.076 0.056 0.433 0.134 1.745 3.831 0.030 0.068 0.440 0.476 0.368 0.514 3.931 4.321 3.274 1.433 0.136 0.169 0.195 0.322 4.294 3.184 0.620 0.514 0.196 0.265 0.828 1.199 0.199 nan 4.884 2.564 3.772 1.218 0.177 0.089 1.416 1.745 0.065 1.208 0.066 0.104 1048 chr10 16532042 16540189 + 0 NA intron (NM_001261837, intron 4 of 4) intron (NM_001261837, intron 4 of 4) 27889 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding nan 1.043 1.360 0.537 1.040 0.570 0.169 0.101 0.231 0.193 0.323 0.323 0.041 0.068 0.432 0.343 0.295 0.323 0.480 0.539 11.975 4.402 0.112 0.147 0.389 0.454 0.377 0.443 1.597 1.562 0.078 0.108 1.926 3.666 2.034 5.527 1.848 0.857 0.021 0.219 0.645 0.303 0.323 0.154 0.028 0.085 2.123 1061 chr10 21157965 21183653 + 0 NA intron (NM_006393, intron 4 of 27) intron (NM_006393, intron 4 of 27) 15722 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 0.827 1.107 0.541 0.728 0.468 0.231 0.179 0.137 0.156 0.286 0.144 0.268 0.242 0.106 0.103 0.548 0.452 0.325 0.685 0.354 0.453 8.261 2.687 0.150 0.144 0.125 0.249 0.543 0.717 0.289 0.134 0.143 0.248 1.316 1.963 0.160 0.346 1.956 0.771 0.013 0.508 0.493 0.097 0.179 0.268 0.076 0.720 0.058 0.038 2054 chr12 83073551 83085757 + 0 NA Intergenic Intergenic -1280 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane and tetratricopeptide repeat containing 2 protein-coding 1.646 1.421 1.448 0.998 1.332 0.932 0.743 2.471 0.315 0.526 0.377 0.764 5.302 0.314 0.088 0.541 0.668 1.674 2.557 4.500 3.305 1.481 0.537 2.633 2.907 3.369 4.244 3.141 5.184 0.660 0.633 0.319 0.883 1.530 1.471 0.605 0.905 1.618 0.965 0.093 1.443 0.364 0.412 0.743 0.764 0.589 0.617 0.315 0.171 3635 chr18 922627 937225 + 0 NA Intergenic Intergenic 24729 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 1.102 1.913 0.838 1.965 0.213 0.209 0.077 0.107 0.076 0.172 0.158 0.433 nan 0.022 0.105 0.336 0.132 0.179 0.228 1.041 0.986 nan 0.972 0.207 0.153 0.250 nan 2.552 2.531 nan 0.247 0.038 0.077 0.405 0.620 0.212 nan nan 1.373 6.869 0.736 0.072 0.065 0.077 0.433 0.060 0.587 0.007 0.075 2859 chr15 43799821 43810954 + 0 NA Intergenic AluSp|SINE|Alu -2680 NM_005657 7158 Hs.440968 NM_005657 ENSG00000067369 TP53BP1 53BP1|TDRD30|TP53|p202|p53BP1 tumor protein p53 binding protein 1 protein-coding 2.179 1.235 nan 0.807 1.448 0.782 4.292 1.417 0.217 0.822 0.566 1.603 3.093 0.467 0.090 1.229 1.888 0.660 0.844 2.512 2.175 3.877 0.876 0.556 0.676 1.694 nan 2.396 3.436 4.556 4.247 1.006 1.166 1.803 2.417 2.879 4.006 2.175 1.243 0.728 2.526 0.445 0.576 4.292 1.603 1.511 1.780 0.825 0.904 6764 chr6 41485318 41556863 + 0 NA intron (NM_001012426, intron 1 of 16) intron (NM_001012426, intron 1 of 16) -4731 NR_126415 101060264 Hs.571099 NR_126415 ENSG00000234753 FOXP4-AS1 - FOXP4 antisense RNA 1 ncRNA 1.424 1.094 1.882 1.783 1.050 0.542 0.913 0.332 0.098 0.355 0.200 1.677 1.499 0.297 0.107 1.040 1.779 0.525 0.746 1.372 1.453 1.914 0.748 0.717 0.749 0.481 0.783 4.706 nan 0.864 0.795 1.083 1.984 1.562 1.545 0.581 1.499 1.731 0.934 0.493 0.598 0.552 0.252 0.913 1.677 0.292 0.752 1.129 0.508 2169 chr12 118957449 118976626 + 0 NA Intergenic AluSx|SINE|Alu 152679 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding nan nan 0.428 0.059 0.271 0.142 0.556 0.043 0.059 0.025 0.115 0.304 0.822 0.023 0.099 0.708 0.610 0.168 0.156 nan nan nan 1.284 0.138 0.116 0.174 0.310 nan nan 0.340 0.163 0.281 0.753 0.091 0.082 0.229 0.382 nan 0.758 0.121 0.933 0.015 0.099 0.556 0.304 0.131 0.042 0.979 0.071 4211 chr2 9893336 9914654 + 0 NA Intergenic Intergenic -79576 NM_001318977 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 1.196 1.149 1.012 0.400 0.286 0.263 1.593 0.115 0.084 0.737 0.254 0.624 0.704 0.068 0.093 0.667 1.019 0.338 0.477 1.255 1.156 1.990 0.566 0.233 0.258 0.214 0.503 2.387 2.414 0.722 0.488 0.418 0.540 0.605 0.463 0.442 0.740 1.708 1.181 1.759 4.998 0.111 0.246 1.593 0.624 0.279 0.591 0.137 0.235 1315 chr11 12709817 12722817 + 0 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 20348 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 1.278 nan 1.557 3.728 1.028 0.392 0.981 2.374 0.198 1.678 0.794 2.451 4.546 0.178 0.085 nan 1.131 0.642 1.458 2.401 2.418 1.141 0.407 0.772 0.775 4.424 nan 4.029 4.391 0.804 0.430 1.140 1.848 2.501 3.020 0.568 1.333 3.041 nan 3.131 0.562 0.535 0.236 0.981 2.451 0.127 0.809 1.250 0.143 1832 chr12 11945137 11977419 + 0 NA intron (NM_001987, intron 2 of 7) intron (NM_001987, intron 2 of 7) 158490 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 0.938 1.144 1.751 4.335 2.763 1.529 0.360 0.333 0.070 1.730 0.999 3.281 2.776 0.102 0.115 0.222 0.192 2.344 3.049 nan 2.936 10.427 4.922 1.283 1.449 0.770 1.161 4.353 5.825 0.558 0.443 0.282 0.390 0.494 0.578 0.306 0.557 1.951 1.033 0.343 0.387 0.106 0.042 0.360 3.281 0.057 0.330 0.064 0.118 8109 chr9 33674534 33703546 + 0 NA Intergenic LTR45|LTR|ERV1 -11622 NR_023917 11191 Hs.493716 NR_023917 ENSG00000237984 PTENP1 PTEN-rs|PTEN2|PTENpg1|PTH2|psiPTEN phosphatase and tensin homolog pseudogene 1 pseudo 2.243 nan 1.172 0.690 0.773 0.360 0.942 0.121 0.111 3.725 1.950 2.317 1.160 0.236 0.091 0.549 0.551 0.230 0.310 1.955 2.048 4.840 2.193 0.639 0.641 0.347 0.527 0.881 1.088 4.320 4.032 0.513 0.739 4.442 4.666 1.753 3.452 4.519 2.268 0.359 0.487 1.384 2.634 0.942 2.317 0.328 0.459 0.236 1.432 6198 chr5 17213785 17230766 + 0 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 4605 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding nan nan nan 0.316 1.416 0.622 1.450 0.322 0.198 2.302 1.495 1.890 nan 0.103 0.111 0.258 0.134 1.492 1.928 5.392 4.701 2.519 0.731 1.878 1.808 nan 2.686 1.475 2.325 1.968 1.654 0.710 1.769 0.609 0.523 0.655 nan 3.164 1.725 1.180 0.032 0.129 0.032 1.450 1.890 0.268 0.060 0.685 0.203 3819 chr18 53066819 53093924 + 0 NA intron (NM_001330604, intron 5 of 19) intron (NM_001330604, intron 5 of 19) -9145 NM_001306208 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 1.028 1.287 0.214 0.696 0.364 2.278 1.260 0.093 1.023 0.683 1.091 1.362 2.378 0.110 0.615 0.505 4.367 5.518 2.832 2.412 6.579 2.869 0.737 0.868 3.187 3.553 0.645 0.641 2.785 2.286 1.131 1.656 5.847 6.012 0.337 0.652 nan 3.157 0.664 1.185 1.704 0.926 2.278 1.091 1.030 2.653 1.380 0.119 5806 chr3 196357289 196390611 + 0 NA intron (NM_198565, intron 1 of 2) L1ME4a|LINE|L1 7383 NM_198565 375387 Hs.702186 NM_198565 ENSG00000174004 NRROS ELLP3030|GARPL1|LRRC33|UNQ3030 negative regulator of reactive oxygen species protein-coding nan 2.866 1.842 1.324 2.432 1.149 0.734 0.378 0.180 0.555 0.292 1.073 nan 0.446 0.078 1.129 1.067 0.434 0.642 1.868 1.512 2.328 0.769 2.085 2.239 0.736 1.224 2.786 3.284 1.382 0.995 1.340 1.660 0.779 0.708 1.075 1.740 0.964 0.767 3.675 1.826 0.131 0.404 0.734 1.073 0.287 0.366 1.073 0.952 5340 chr3 20964836 20972511 + 0 NA Intergenic AluSp|SINE|Alu -478545 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 0.558 0.633 0.539 0.046 0.342 0.239 0.083 0.203 0.105 0.102 0.151 0.016 0.194 0.015 0.049 0.743 0.549 6.080 7.081 0.111 0.233 0.092 0.039 0.238 0.166 0.655 0.816 0.369 0.378 nan 0.156 0.449 0.985 0.319 0.347 0.162 0.216 0.545 0.375 0.012 0.023 0.058 0.020 0.083 0.016 0.076 0.019 0.231 0.032 4508 chr2 135783194 135813360 + 0 NA Intergenic Intergenic -11558 NM_012233 22930 Hs.306327 NM_012233 ENSG00000115839 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein catalytic subunit 1 protein-coding nan 0.895 nan 0.391 0.458 0.292 0.300 0.370 0.101 0.183 0.207 0.444 1.013 0.281 0.089 0.617 0.507 0.646 0.927 0.569 0.574 1.291 0.552 0.638 0.620 0.573 0.892 0.785 nan 1.416 1.058 0.444 0.600 0.312 0.337 1.269 4.242 0.524 0.437 0.196 0.315 0.067 0.160 0.300 0.444 0.098 0.103 0.177 2.185 8060 chr9 14173191 14187072 + 0 NA intron (NM_001190737, intron 2 of 10) intron (NM_001190737, intron 2 of 10) 670 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 1.311 0.646 0.860 0.507 0.193 0.383 0.081 0.802 0.605 0.383 1.413 0.102 0.115 0.245 0.174 3.351 7.654 0.465 0.518 2.316 0.687 0.177 0.163 7.595 9.337 0.753 0.817 0.262 0.116 0.257 0.328 1.864 2.912 0.232 0.534 2.678 1.296 0.534 0.084 0.522 0.097 0.193 0.383 0.034 0.051 0.043 0.035 975 chr1 246263498 246281071 + 0 NA intron (NM_001167740, intron 5 of 11) L2c|LINE|L2 308430 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding nan 1.219 nan 4.350 0.704 0.330 1.188 0.323 0.111 0.484 0.408 1.640 1.441 0.110 0.114 0.434 0.400 0.521 0.880 0.869 1.038 6.933 2.645 0.605 0.677 0.541 0.717 5.062 5.341 0.372 0.205 0.162 0.295 0.885 1.362 0.558 1.133 1.226 0.835 0.110 0.162 0.109 0.059 1.188 1.640 0.050 2.567 0.060 0.266 5753 chr3 185646413 185662060 + 0 NA intron (NM_004593, intron 1 of 8) intron (NM_004593, intron 1 of 8) 1688 NM_001243879 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog (Drosophila) protein-coding 3.973 2.944 2.168 2.788 4.087 2.346 1.858 1.985 0.278 1.890 0.988 1.797 6.121 1.467 0.129 3.057 2.971 3.272 4.436 5.220 4.653 5.368 2.941 6.347 6.380 3.199 4.026 3.659 5.036 7.788 8.119 2.370 4.827 3.346 3.343 5.375 4.062 2.203 1.304 1.939 2.392 0.530 1.879 1.858 1.797 0.489 0.921 1.274 1.503 7901 chr8 121455170 121459595 + 0 NA promoter-TSS (NM_022045) promoter-TSS (NM_022045) -256 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding nan nan nan 4.072 4.430 2.204 2.563 2.273 0.259 0.906 0.427 4.323 nan 1.708 0.097 4.609 4.810 6.134 7.887 9.768 10.021 8.367 4.904 20.748 23.121 4.334 4.995 3.976 5.450 7.898 7.522 5.489 9.956 4.921 4.706 6.156 6.238 2.728 1.859 2.517 2.233 0.910 1.026 2.563 4.323 0.525 2.082 2.128 1.766 3709 chr18 29670088 29675175 + 0 NA promoter-TSS (NM_001191324) promoter-TSS (NM_001191324) 62 NM_001191324 51444 Hs.302408 NM_016271 ENSG00000134758 RNF138 HSD-4|NARF|STRIN|hNARF ring finger protein 138 protein-coding 4.801 4.347 5.627 5.945 5.927 2.868 9.767 1.760 0.348 2.773 0.991 5.195 10.216 2.114 0.103 7.621 7.029 6.918 nan 12.958 10.861 13.558 9.770 8.814 9.482 2.704 3.714 11.626 16.469 7.465 8.308 1.994 4.028 10.279 9.302 7.298 6.011 6.780 4.267 3.871 4.331 2.068 4.304 9.767 5.195 1.601 3.106 1.122 2.050 3822 chr18 53244058 53258564 + 0 NA intron (NM_001330604, intron 3 of 19) intron (NM_001330604, intron 3 of 19) 2039 NM_001306207 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 0.858 0.919 1.315 2.518 1.426 3.358 1.353 0.045 1.267 0.907 2.915 3.429 3.939 0.126 2.271 3.131 4.274 3.993 8.036 6.297 10.368 4.541 6.112 6.151 2.388 3.008 1.902 2.741 2.817 3.388 2.164 3.359 6.051 5.446 1.831 1.949 nan 2.724 0.665 1.907 1.558 2.209 3.358 2.915 0.622 3.803 1.802 0.835 5347 chr3 25462523 25517300 + 0 NA intron (NR_110893, intron 1 of 6) intron (NR_110893, intron 1 of 6) -9890 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 0.839 0.921 0.613 0.052 0.220 0.123 0.152 0.615 0.138 0.122 0.176 0.033 0.215 1.298 0.086 0.170 0.137 1.354 4.919 0.311 0.342 0.080 0.060 0.158 0.176 0.719 0.958 0.179 0.201 nan 0.392 0.156 0.235 1.383 1.668 0.120 0.214 0.353 0.367 0.038 0.039 0.364 0.134 0.152 0.033 0.035 0.103 0.034 0.057 4047 chr19 38825903 38828592 + 0 NA intron (NM_001330496, intron 1 of 27) CpG 804 NM_021185 57828 Hs.324335 NM_021185 ENSG00000099338 CATSPERG C19orf15 cation channel sperm associated auxiliary subunit gamma protein-coding 3.165 2.645 3.493 6.208 2.948 2.349 1.011 1.956 0.475 1.221 0.459 2.401 23.259 3.807 0.166 1.408 2.770 3.490 4.249 5.197 3.675 8.171 3.385 7.715 9.707 1.933 3.124 5.929 7.327 nan 2.728 1.769 2.571 2.757 2.053 1.701 3.655 2.849 1.147 2.862 5.322 0.486 1.413 1.011 2.401 0.540 2.504 1.377 0.730 2667 chr14 70302638 70317834 + 0 NA Intergenic Intergenic -35878 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 2.475 0.921 0.830 1.106 2.204 1.096 1.753 0.153 0.192 1.709 0.932 0.530 0.841 0.029 0.085 0.297 0.124 0.181 0.189 0.925 0.868 4.159 1.754 0.251 0.239 0.680 1.113 1.134 nan 1.273 1.148 0.271 0.380 5.909 6.530 0.343 1.077 3.310 nan 0.069 0.293 2.323 2.401 1.753 0.530 0.071 0.642 0.162 0.422 8253 chr9 117664689 117694853 + 0 NA intron (NM_001252290, intron 2 of 4) intron (NM_001252290, intron 2 of 4) 13104 NM_001244 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A tumor necrosis factor superfamily member 8 protein-coding 0.732 1.404 nan 1.066 0.610 0.393 0.304 0.158 0.064 0.436 0.235 2.890 1.916 0.022 0.095 1.950 2.539 1.008 2.781 2.993 4.048 1.170 0.480 1.532 1.592 0.169 0.351 4.579 nan 0.727 0.422 2.544 3.885 1.228 1.504 0.122 0.214 nan 0.997 3.809 0.375 0.504 0.262 0.304 2.890 0.488 0.578 3.499 0.025 7210 chr7 26191360 26197847 + 0 NA intron (NM_004289, intron 1 of 3) intron (NM_004289, intron 1 of 3) 2756 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 3.231 1.683 5.168 1.021 0.860 0.391 1.003 0.393 0.150 0.649 0.506 0.522 3.435 1.071 0.105 4.683 4.548 8.247 10.603 1.372 1.141 4.714 1.257 2.815 2.900 0.889 1.662 2.303 3.368 1.381 2.201 3.422 4.407 0.858 0.522 2.505 nan 0.853 0.720 0.856 2.184 0.126 0.646 1.003 0.522 0.270 0.622 1.695 1.997 4961 chr20 44598490 44603202 + 0 NA promoter-TSS (NM_022095) promoter-TSS (NM_022095) -13 NM_022095 63925 Hs.174193 NM_022095 ENSG00000198026 ZNF335 MCPH10|NIF-1|NIF1|NIF2 zinc finger protein 335 protein-coding nan nan 3.372 5.660 5.713 3.422 5.156 3.850 0.379 1.975 0.977 4.266 8.453 5.175 0.128 11.491 10.483 6.250 9.196 7.369 8.799 12.505 9.798 11.288 12.414 4.854 5.553 7.962 11.289 nan 9.023 8.886 10.200 3.983 5.057 7.935 6.360 2.038 1.204 2.159 4.142 0.789 3.339 5.156 4.266 1.532 2.057 2.266 2.782 854 chr1 212808034 212813990 + 0 NA Intergenic AluSp|SINE|Alu 13223 NM_153606 149647 Hs.129293 NM_153606 ENSG00000162771 FAM71A GARI-L4 family with sequence similarity 71 member A protein-coding 1.942 1.786 2.123 0.987 0.916 0.513 0.962 1.865 0.161 1.108 0.559 0.894 nan 0.073 0.113 0.469 0.324 13.725 3.953 2.282 1.629 nan 0.407 3.219 3.349 1.207 nan 5.020 2.870 0.896 1.070 0.133 0.267 1.056 1.327 0.869 2.553 2.267 1.517 0.483 0.135 0.193 0.013 0.962 0.894 0.359 2.219 0.114 0.627 3120 chr16 31468793 31472629 + 0 NA 5' UTR (NM_001105247, exon 1 of 6) 5' UTR (NM_001105247, exon 1 of 6) 394 NM_024742 79798 Hs.732945 NM_024742 ENSG00000140691 ARMC5 AIMAH2 armadillo repeat containing 5 protein-coding 5.538 2.777 4.318 7.128 5.843 3.477 4.345 2.801 0.297 1.879 0.524 5.004 14.125 3.862 0.078 5.264 5.441 4.759 7.380 5.615 4.489 12.966 5.839 11.884 12.770 4.918 5.993 11.060 15.697 7.465 8.107 3.899 5.865 6.357 6.714 3.826 5.832 3.807 1.835 4.504 3.438 1.241 2.438 4.345 5.004 1.630 4.490 1.646 1.477 5989 chr4 111536778 111545268 + 0 NA intron (NM_153427, intron 4 of 4) intron (NM_153427, intron 4 of 4) 3231 NM_000325 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 0.457 0.693 0.426 0.078 0.114 0.056 0.106 0.991 0.056 0.054 0.058 0.057 2.262 0.319 0.091 1.050 1.802 9.414 10.341 0.104 0.156 0.046 0.061 0.138 0.170 0.146 0.206 1.566 2.021 0.296 0.190 0.290 0.993 1.526 0.854 0.306 0.638 0.257 0.168 0.356 0.302 0.101 0.106 0.057 0.024 1.147 0.269 0.161 1520 chr11 73357687 73366679 + 0 NA intron (NM_021200, intron 3 of 7) AluJb|SINE|Alu 2448 NM_001130036 58473 Hs.445489 NM_021200 ENSG00000021300 PLEKHB1 KPL1|PHR1|PHRET1 pleckstrin homology domain containing B1 protein-coding nan 0.975 0.952 0.498 0.881 0.338 0.398 0.139 0.053 0.104 0.102 0.947 0.751 0.170 0.098 8.656 8.708 2.571 3.105 1.716 1.532 4.205 0.599 8.032 8.731 0.647 1.097 2.849 3.908 0.466 0.202 4.046 7.782 1.211 1.248 0.821 2.048 1.026 0.702 0.476 0.385 0.116 0.196 0.398 0.947 0.065 0.159 2.336 0.470 6931 chr6 122709356 122723129 + 0 NA Intergenic L2b|LINE|L2 -4454 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 2.354 1.342 1.948 1.310 1.592 0.872 1.188 0.374 0.105 0.853 0.430 1.447 2.010 0.505 0.097 1.952 3.184 2.029 2.756 2.083 2.141 6.821 6.679 2.446 2.345 0.748 0.965 1.249 2.846 1.874 1.867 0.744 1.573 1.236 1.120 1.595 1.702 1.118 0.983 0.317 0.903 0.151 0.391 1.188 1.447 0.155 0.605 0.283 0.638 7091 chr6 162895028 162907179 + 0 NA intron (NM_013987, intron 1 of 10) AluSc|SINE|Alu -247061 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PARK2CRG PARK2 coregulated protein-coding 0.601 nan 0.656 0.152 0.190 0.083 0.201 0.061 0.066 0.065 0.040 0.086 0.204 0.026 0.084 0.483 0.448 0.179 0.301 0.296 0.367 6.444 2.069 0.111 0.091 0.153 0.208 0.365 0.365 nan 0.480 0.124 0.288 0.220 0.398 0.344 0.683 0.426 0.353 0.014 0.043 0.008 0.046 0.201 0.086 0.016 0.050 0.074 0.035 2239 chr13 23452514 23458939 + 0 NA intron (NR_138043, intron 2 of 2) MER50|LTR|ERV1 16594 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - brain abundant, membrane attached signal protein 1 pseudogene 1 pseudo 0.544 0.732 0.520 0.123 0.077 0.050 0.019 0.164 0.025 0.098 0.105 0.093 0.193 0.067 0.062 1.359 1.061 14.525 10.833 0.342 0.314 0.072 0.084 0.194 0.071 0.170 0.245 0.281 0.265 0.469 0.186 4.011 8.600 0.046 0.040 0.174 0.253 0.632 0.622 0.070 0.015 0.123 0.019 0.093 0.047 6.839 0.067 3587 chr17 76833574 76838513 + 0 NA intron (NM_001321291, intron 1 of 20) intron (NM_001321291, intron 1 of 20) 566 NM_001321291 57602 Hs.464243 NM_025090 ENSG00000055483 USP36 DUB1 ubiquitin specific peptidase 36 protein-coding 5.770 4.687 4.307 5.798 4.942 2.777 5.855 3.422 0.442 3.511 1.289 4.337 7.595 2.668 0.131 7.452 6.994 4.853 7.604 8.755 7.026 8.372 5.079 12.599 12.499 nan 5.175 7.298 10.693 8.784 10.871 2.861 5.308 6.327 6.603 5.394 4.719 nan 2.569 2.115 4.374 0.870 2.776 5.855 4.337 1.289 6.231 1.232 1.627 1879 chr12 27021286 27038558 + 0 NA Intergenic Tigger1|DNA|TcMar-Tigger -43791 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding nan nan nan 0.403 0.533 0.223 0.171 0.199 0.056 0.434 0.240 0.436 1.055 0.050 0.112 0.232 0.296 0.213 0.417 2.655 2.359 1.531 0.402 0.577 0.544 0.294 0.507 1.278 1.113 1.153 1.063 0.339 0.510 0.396 0.223 0.421 0.899 1.602 0.908 4.104 1.157 0.123 0.128 0.171 0.436 0.369 0.552 0.501 0.307 2917 chr15 66979968 67001109 + 0 NA Intergenic L2a|LINE|L2 -4136 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 1.344 1.064 nan 0.341 0.651 0.341 1.138 0.928 0.258 0.266 0.123 1.345 2.122 1.205 0.093 0.329 0.293 3.645 6.446 0.927 0.917 nan 0.109 0.228 0.300 0.951 1.505 0.368 0.603 2.275 2.259 0.301 0.519 1.257 1.024 1.069 1.623 0.586 0.474 0.355 0.358 0.519 1.204 1.138 1.345 0.592 0.386 0.233 0.695 2342 chr13 72425118 72454466 + 0 NA intron (NM_080760, intron 2 of 8) CpG 1538 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding nan 1.135 1.405 0.370 2.034 1.114 3.677 0.063 0.049 0.321 0.212 0.375 2.999 0.122 0.078 0.900 1.296 0.458 0.826 4.728 4.470 nan 0.733 0.179 0.221 1.224 1.480 0.561 0.627 nan 7.642 0.314 0.548 3.120 2.508 3.824 nan 0.566 0.261 0.136 0.167 0.896 7.000 3.677 0.375 1.012 0.654 0.114 1.610 828 chr1 207175737 207185996 + 0 NA Intergenic Intergenic 25235 NM_023938 79098 Hs.32417 NM_023938 ENSG00000182795 C1orf116 SARG chromosome 1 open reading frame 116 protein-coding 0.829 1.093 1.311 0.384 0.371 0.187 0.274 0.255 0.172 0.122 0.072 0.093 0.468 0.084 0.147 0.398 0.304 4.905 15.162 0.525 0.752 0.322 0.182 nan nan 0.286 0.454 1.009 0.733 0.383 0.183 0.069 0.154 0.112 0.123 0.163 0.242 0.876 0.704 0.112 0.160 0.009 0.070 0.274 0.093 0.047 0.030 0.038 0.109 1831 chr12 11896486 11912080 + 0 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 101495 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 0.825 1.044 1.489 2.373 0.438 0.196 0.256 0.172 0.031 0.660 0.375 0.817 1.661 0.067 0.112 0.251 0.210 0.548 1.451 nan 1.168 4.642 1.671 0.477 0.484 0.430 0.543 2.120 2.188 0.353 0.198 0.264 0.339 0.234 0.344 0.391 0.614 1.264 0.658 1.020 0.405 0.037 0.035 0.256 0.817 0.012 0.078 0.062 0.158 3949 chr19 5621622 5628777 + 0 NA intron (NM_002967, intron 1 of 20) intron (NM_002967, intron 1 of 20) 2153 NM_001201338 6294 Hs.728802 NM_002967 ENSG00000160633 SAFB HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1 scaffold attachment factor B protein-coding 3.388 2.213 3.233 3.326 4.181 2.520 2.970 1.698 0.113 1.490 0.871 4.540 6.896 2.663 0.130 3.312 3.380 4.527 6.352 5.537 5.889 3.409 1.614 9.067 9.152 3.982 4.875 5.730 nan 9.686 8.283 1.863 4.048 2.954 4.637 4.101 4.525 2.988 1.666 2.905 2.264 0.825 1.884 2.970 4.540 1.379 1.979 0.946 1.325 1841 chr12 12711380 12716835 + 0 NA intron (NM_030640, intron 1 of 6) intron (NM_030640, intron 1 of 6) 1341 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 6.198 4.247 5.363 5.537 9.281 4.950 3.444 1.584 0.238 6.489 2.291 6.481 10.462 4.564 0.137 1.783 2.028 6.867 10.414 nan 6.128 8.411 6.914 12.746 13.616 6.379 8.215 6.343 12.895 1.718 1.379 2.474 4.415 6.327 6.253 3.161 3.086 3.923 2.174 2.373 5.074 1.045 2.446 3.444 6.481 0.413 1.711 1.200 0.736 3165 chr16 70556325 70560216 + 0 NA promoter-TSS (NM_001195139) promoter-TSS (NM_001195139) 579 NM_012426 23450 Hs.514435 NM_012426 ENSG00000189091 SF3B3 RSE1|SAP130|SF3b130|STAF130 splicing factor 3b subunit 3 protein-coding 8.909 4.329 6.091 9.444 6.952 3.958 7.007 4.830 0.330 2.380 1.230 4.408 7.440 3.639 0.246 10.415 7.538 8.616 12.387 10.963 11.434 9.886 7.496 20.876 22.510 5.101 6.920 9.278 17.119 18.147 16.178 6.847 8.671 6.498 8.231 11.240 8.925 6.062 3.588 3.984 2.447 0.999 2.671 7.007 4.408 2.959 4.912 1.686 2.497 7298 chr7 57697300 57701845 + 0 NA Intergenic L2b|LINE|L2 189689 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding nan 0.986 1.231 0.181 0.549 0.463 0.141 0.165 0.324 0.136 0.183 0.106 0.582 0.163 0.271 2.489 5.459 8.705 1.851 0.349 0.421 0.208 0.135 0.449 0.565 0.334 0.447 0.104 0.219 0.559 0.172 0.595 0.846 0.036 0.132 0.236 0.280 0.363 0.504 0.036 0.136 0.084 0.159 0.141 0.106 0.022 0.056 0.152 0.080 2834 chr15 31689166 31696368 + 0 NA intron (NM_001302461, intron 1 of 1) L2a|LINE|L2 73709 NM_015995 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 1.280 nan nan 0.750 1.235 0.558 0.521 0.508 0.045 0.628 0.262 0.759 2.713 0.074 0.037 0.652 1.561 0.325 0.689 0.619 0.810 2.125 0.487 0.256 0.347 0.385 0.717 0.968 1.077 1.864 1.816 0.652 1.184 2.281 1.767 0.433 0.659 0.656 0.422 0.616 0.630 0.597 0.417 0.521 0.759 3.262 1.804 0.853 0.174 1127 chr10 65294147 65323141 + 0 NA intron (NM_001001330, intron 1 of 7) intron (NM_001001330, intron 1 of 7) -26809 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 0.946 nan 1.137 0.098 0.342 0.194 0.084 0.810 0.226 0.206 0.160 0.191 0.316 0.088 0.108 0.432 0.357 1.261 2.855 0.250 0.326 0.421 0.205 0.411 0.393 3.531 3.592 0.417 0.501 0.903 0.695 0.124 0.185 0.118 0.152 0.462 nan 0.430 0.293 0.038 0.051 0.029 0.047 0.084 0.191 0.339 0.046 0.027 0.299 3061 chr16 14722421 14734526 + 0 NA intron (NM_001330500, intron 1 of 5) FLAM_C|SINE|Alu 1805 NM_016561 51283 Hs.435556 NM_016561 ENSG00000103429 BFAR BAR|RNF47 bifunctional apoptosis regulator protein-coding 3.258 2.122 nan 2.841 2.388 0.913 1.859 1.412 0.360 1.615 0.667 1.918 5.018 1.789 0.113 2.507 2.120 1.963 3.091 2.025 2.035 6.188 2.408 7.460 7.279 2.070 2.836 3.511 5.287 nan 2.153 1.533 2.296 2.147 2.881 3.628 4.832 1.937 0.957 1.004 2.051 0.362 1.003 1.859 1.918 1.108 0.972 0.751 2.539 4230 chr2 16051461 16188966 + 0 NA Intergenic AluJb|SINE|Alu -37842 NM_001329968 10408 Hs.651453 NM_006316 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand protein-coding 6.517 3.491 7.495 0.369 0.184 0.104 0.114 0.058 0.079 0.096 0.102 0.052 0.772 0.048 0.098 0.578 0.530 0.463 0.765 0.575 0.507 0.801 0.288 0.584 0.564 0.219 0.352 0.459 nan 0.793 0.548 13.595 15.404 17.716 18.199 0.496 nan 0.166 0.291 0.899 0.796 6.373 0.033 0.114 0.052 0.026 0.301 6.955 0.154 3740 chr18 35139177 35160043 + 0 NA Intergenic Intergenic -3610 NM_020180 56853 Hs.435976 NM_020180 ENSG00000101489 CELF4 BRUNOL4|CELF-4 CUGBP, Elav-like family member 4 protein-coding nan 2.041 1.089 2.168 1.983 1.109 4.076 0.022 0.023 0.916 0.701 3.626 3.462 0.089 0.042 1.846 2.300 0.246 0.351 6.205 5.707 4.412 1.680 0.128 0.141 1.460 1.825 nan 3.659 1.743 2.043 0.482 0.698 3.867 3.595 0.631 0.923 4.897 2.453 6.328 1.402 1.215 1.024 4.076 3.626 0.650 1.150 0.214 0.302 7044 chr6 150948443 151141329 + 0 NA intron (NM_001329802, intron 1 of 14) MLT1F1|LTR|ERVL-MaLR 2817 NM_001329801 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding nan 1.049 0.603 0.251 0.219 0.105 0.897 0.081 0.104 0.063 0.085 0.299 0.742 4.069 0.202 0.365 0.211 1.203 2.664 0.670 nan 1.072 0.406 0.277 0.302 0.094 0.171 0.507 0.514 0.684 0.348 0.147 0.256 0.065 0.101 0.159 nan 0.142 0.198 0.124 0.191 0.015 0.050 0.897 0.299 0.085 0.036 0.036 0.034 2251 chr13 27535683 27547049 + 0 NA Intergenic Intergenic -158304 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 1.279 0.610 3.440 1.825 0.408 0.218 0.225 0.086 0.057 0.248 0.131 1.628 0.678 0.048 0.068 0.890 1.663 0.362 nan 4.777 4.622 2.165 0.423 0.219 0.295 0.830 1.143 1.954 2.301 8.056 10.061 1.059 1.205 0.128 0.128 0.239 0.435 1.914 0.933 0.147 0.552 0.803 0.225 1.628 0.662 2.619 0.898 0.087 8304 chr9 133530975 133548608 + 0 NA promoter-TSS (NM_021619) promoter-TSS (NM_021619) -190 NM_021619 59335 Hs.495311 NM_021619 ENSG00000130711 PRDM12 HSAN8|PFM9 PR/SET domain 12 protein-coding nan 0.533 0.726 0.286 0.252 0.181 0.349 0.091 0.091 0.090 0.060 0.299 0.640 0.088 0.062 0.182 0.123 0.207 0.244 14.275 12.127 nan 0.176 0.181 0.167 0.757 0.901 0.368 0.450 1.073 0.630 0.141 0.123 0.141 0.346 0.263 0.364 0.360 0.345 0.159 0.207 0.043 0.091 0.349 0.299 0.520 0.984 0.028 0.042 3070 chr16 18798763 18816612 + 0 NA intron (NM_015161, intron 3 of 5) intron (NM_015161, intron 3 of 5) 5005 NM_001313858 23204 Hs.634882 NM_015161 ENSG00000170540 ARL6IP1 AIP1|ARL6IP|ARMER|SPG61 ADP ribosylation factor like GTPase 6 interacting protein 1 protein-coding 2.382 1.496 nan 2.203 2.087 1.185 1.388 0.808 0.136 1.016 0.598 2.258 5.174 1.714 0.134 1.879 2.270 1.818 2.383 3.425 3.147 4.386 1.581 4.107 3.941 2.086 2.724 6.133 8.301 nan 3.468 1.658 2.739 2.020 2.803 2.447 3.320 1.941 0.973 1.584 0.919 0.477 1.065 1.388 2.258 0.556 0.904 0.568 1.448 6599 chr6 6878180 6888591 + 0 NA Intergenic L2c|LINE|L2 -224445 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 0.938 0.839 1.489 0.411 0.339 0.265 0.234 0.102 0.096 0.136 0.102 0.934 0.429 0.083 0.110 1.264 2.249 0.452 0.433 0.467 0.531 0.885 0.470 0.623 0.534 0.274 0.388 1.701 1.437 0.489 0.222 0.690 0.820 0.177 0.239 0.394 0.616 0.507 0.540 0.086 0.630 0.018 0.200 0.234 0.934 0.038 4.478 0.493 0.153 6294 chr5 67533583 67567743 + 0 NA intron (NM_181523, intron 2 of 15) (T)n|Simple_repeat|Simple_repeat -33589 NM_181524 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 0.862 1.439 0.888 0.245 0.340 0.206 0.423 1.452 0.183 0.115 0.090 0.103 0.338 0.075 0.127 0.239 0.264 0.609 0.897 0.356 0.464 0.886 0.249 0.206 0.198 2.062 2.716 0.527 0.470 0.416 0.275 0.174 0.280 2.454 4.542 0.371 1.038 0.550 0.426 0.315 0.185 0.858 0.062 0.423 0.103 0.003 0.053 0.058 0.203 657 chr1 170630823 170648095 + 0 NA intron (NM_006902, intron 1 of 4) intron (NM_006902, intron 1 of 4) 6146 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding nan nan nan 0.195 0.231 0.087 0.821 5.155 0.476 0.137 0.211 0.076 1.449 0.056 0.104 0.403 0.292 0.942 1.185 nan 0.453 0.089 0.066 0.083 0.100 5.660 7.796 0.319 0.324 1.209 1.213 0.542 0.867 0.073 0.076 0.362 nan 0.263 0.392 0.032 0.320 0.016 0.018 0.821 0.076 0.006 0.089 0.125 0.298 5616 chr3 156331480 156349511 + 0 NA Intergenic HERVL18-int|LTR|ERVL -51710 NM_015508 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding nan 1.260 0.737 1.105 0.891 0.426 0.693 0.297 0.090 0.397 0.312 0.529 0.597 0.103 0.087 0.309 0.265 0.392 1.084 0.469 0.655 4.177 0.621 0.296 0.285 0.281 nan 1.556 1.543 0.605 0.409 0.156 0.242 1.029 1.951 0.261 0.416 1.208 0.871 0.259 0.502 0.080 0.160 0.693 0.529 0.299 0.317 0.027 0.127 6143 chr5 3590740 3599179 + 0 NA Intergenic CpG -1209 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 0.244 0.459 0.713 0.135 0.156 0.115 1.967 0.116 0.132 0.145 0.127 1.165 1.219 0.076 0.075 2.630 2.091 0.416 nan 6.929 5.950 0.051 0.028 0.033 0.048 0.065 0.189 nan 0.109 nan 11.801 1.821 5.188 0.029 0.071 0.067 0.044 0.102 nan 0.006 0.182 0.023 0.609 1.967 1.165 0.931 0.049 1.499 0.044 1114 chr10 49792701 49818231 + 0 NA intron (NR_045675, intron 2 of 10) intron (NR_045675, intron 2 of 10) 7710 NM_001347737 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 0.691 nan 5.126 0.430 0.660 0.351 0.075 0.092 0.075 0.093 0.094 2.307 2.109 0.068 0.079 0.591 0.867 0.227 0.322 1.253 1.022 2.462 0.443 0.773 0.805 0.202 0.383 1.331 1.488 0.589 0.610 0.177 0.227 0.563 0.684 0.165 0.236 0.502 0.415 1.102 0.219 0.175 0.402 0.075 2.307 0.130 0.020 0.027 0.088 4497 chr2 131588821 131611565 + 0 NA Intergenic Intergenic -74031 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|STM6 Rho guanine nucleotide exchange factor 4 protein-coding nan 0.412 nan 0.034 0.422 0.141 0.521 0.059 0.078 0.040 0.081 0.142 0.898 0.100 0.078 1.127 1.873 0.563 0.757 0.491 0.460 1.353 0.289 0.455 0.490 0.219 0.368 1.345 nan 3.472 4.591 1.315 2.091 0.447 0.448 0.476 0.789 0.143 0.177 0.186 0.948 0.080 0.024 0.521 0.142 1.150 0.085 0.937 0.224 8019 chr9 3396258 3414310 + 0 NA intron (NM_001282116, intron 1 of 16) intron (NM_001282116, intron 1 of 16) -9688 NM_002919 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 1.008 1.795 0.870 0.258 1.853 1.094 1.518 0.108 0.062 0.408 0.299 0.562 0.314 0.179 0.106 0.983 0.575 1.899 2.264 0.725 0.678 2.928 0.801 0.769 0.630 4.082 4.681 0.258 0.192 0.561 0.242 1.305 2.058 3.300 7.370 0.247 nan 1.247 0.838 0.084 0.270 0.876 1.089 1.518 0.562 0.130 0.046 1.261 0.048 5783 chr3 192943667 192961508 + 0 NA Intergenic L2a|LINE|L2 -6330 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 HRASLS A-C1|H-REV107|HRASLS1|HRSL1|HSD28 HRAS like suppressor protein-coding nan 1.436 1.648 0.771 0.674 0.261 0.573 0.147 0.127 0.441 0.348 0.124 nan 0.043 0.069 0.714 0.784 0.948 0.970 2.120 2.050 0.470 0.237 1.836 1.856 0.904 1.244 1.090 1.502 4.878 5.925 0.503 0.816 0.228 0.203 2.764 6.401 1.026 0.840 0.196 1.071 0.112 3.732 0.573 0.124 0.890 0.171 0.384 2.126 5421 chr3 88658245 88678708 + 0 NA Intergenic Intergenic -469460 NM_001195308 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding nan 0.634 0.843 0.039 0.097 0.024 0.482 0.025 0.016 0.023 0.117 0.058 0.154 0.031 0.061 0.141 0.123 0.259 0.453 0.262 0.275 0.156 0.083 0.117 0.112 5.895 5.534 0.125 0.111 0.587 0.388 0.089 0.106 0.029 0.057 0.363 0.649 0.328 0.253 0.003 0.056 0.005 0.012 0.482 0.058 0.010 0.029 0.005 0.036 2353 chr13 78733086 78737516 + 0 NA intron (NR_047001, intron 1 of 5) intron (NR_047001, intron 1 of 5) 106311 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 RNF219-AS1 POU4F1-AS1 RNF219 antisense RNA 1 ncRNA nan 0.882 0.544 0.099 0.158 0.180 0.461 0.285 0.147 0.073 0.111 0.192 0.698 0.048 0.055 10.382 8.716 3.657 2.435 0.234 0.429 nan 0.081 1.338 1.281 0.167 0.159 0.148 0.181 nan 0.132 13.235 13.868 0.029 0.067 0.262 nan 0.115 0.102 0.025 0.782 0.022 0.160 0.461 0.192 0.116 13.948 0.072 8031 chr9 6407411 6415738 + 0 NA Intergenic AluSx1|SINE|Alu -1577 NM_152896 115426 Hs.493401 NM_152896 ENSG00000147854 UHRF2 NIRF|RNF107|TDRD23|URF2 ubiquitin like with PHD and ring finger domains 2 protein-coding 2.594 4.262 2.576 2.249 2.213 1.172 2.723 0.982 0.232 1.601 0.714 1.852 3.680 0.950 0.127 1.580 1.575 3.065 4.299 4.225 3.716 4.919 2.028 2.618 2.564 5.301 7.373 2.261 3.548 3.165 3.773 1.674 3.369 3.205 3.018 2.795 nan 2.767 2.152 1.365 1.543 0.592 1.414 2.723 1.852 0.376 1.415 0.773 0.426 4538 chr2 145178575 145244780 + 0 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -65504 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 1.095 nan 1.066 0.695 1.411 0.695 0.284 0.415 0.076 0.596 0.486 0.499 0.668 0.021 0.086 0.358 0.234 9.085 11.829 0.788 0.716 0.354 0.175 0.233 0.233 1.128 1.346 0.421 0.489 1.145 0.910 0.171 0.516 0.077 0.053 0.599 1.146 0.525 0.432 0.144 0.069 0.026 0.258 0.284 0.499 0.161 0.074 0.236 0.217 3352 chr17 30426732 30455397 + 0 NA Intergenic Intergenic -28409 NM_001033568 55288 Hs.655325 NM_018307 ENSG00000126858 RHOT1 ARHT1|MIRO-1|MIRO1 ras homolog family member T1 protein-coding nan 1.068 0.937 0.245 1.977 1.033 0.248 0.753 0.203 1.329 0.768 1.384 1.061 0.750 0.248 0.608 0.824 0.417 0.672 nan 1.175 3.034 0.923 0.638 0.676 0.675 1.024 0.754 1.083 nan 0.718 0.362 0.628 1.941 1.433 0.903 1.605 3.328 1.551 0.672 0.243 0.353 0.291 0.248 1.384 0.239 0.190 0.201 0.445 1280 chr11 2268381 2294721 + 0 NA Intergenic Intergenic 10631 NM_005170 430 Hs.152475 NM_005170 ENSG00000183734 ASCL2 ASH2|HASH2|MASH2|bHLHa45 achaete-scute family bHLH transcription factor 2 protein-coding 0.406 1.288 0.877 0.073 0.252 0.122 0.131 0.065 0.098 0.082 0.107 0.118 0.792 0.054 0.053 6.525 9.576 4.480 3.016 0.265 0.330 0.506 0.142 8.919 8.986 0.154 0.192 0.204 0.300 0.223 0.102 4.529 8.155 0.243 0.159 0.073 0.093 0.304 0.288 0.541 0.054 0.022 0.015 0.131 0.118 0.015 0.008 5.394 0.028 5712 chr3 179039537 179043085 + 0 NA promoter-TSS (NM_016331) promoter-TSS (NM_016331) -240 NM_016331 51193 Hs.632578 NM_016331 ENSG00000121864 ZNF639 ANC-2H01|ANC_2H01|ZASC1 zinc finger protein 639 protein-coding 8.425 4.860 4.651 5.831 5.093 2.430 3.505 5.078 1.044 5.475 3.442 4.083 9.382 3.455 0.160 4.783 6.075 6.327 9.073 10.021 7.966 12.830 4.807 10.166 10.624 6.301 9.245 8.042 12.722 15.901 20.789 3.583 9.905 9.751 7.713 10.726 9.710 4.007 2.320 1.095 4.576 1.934 4.917 3.505 4.083 1.412 2.533 2.234 4.067 6600 chr6 6926520 6948230 + 0 NA Intergenic AluSz|SINE|Alu -170455 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 1.059 1.207 0.858 0.600 0.459 0.245 0.353 0.101 0.090 0.260 0.225 5.755 0.448 0.040 0.095 1.626 1.931 0.241 0.392 1.935 1.933 1.152 0.697 0.416 0.485 0.249 0.428 0.947 0.744 1.024 0.740 0.261 0.456 0.198 0.247 0.850 1.179 1.264 0.806 0.523 0.614 0.021 1.619 0.353 5.755 0.050 0.743 0.109 0.529 7197 chr7 21400358 21411626 + 0 NA Intergenic Intergenic -61660 NM_001326543 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 0.920 1.317 1.161 1.999 1.333 0.725 0.092 0.109 0.128 0.975 0.495 0.870 2.629 0.204 0.121 0.633 0.400 0.882 nan 0.453 0.549 7.561 3.693 0.273 0.213 0.181 0.375 2.445 3.751 0.332 0.139 0.259 0.439 1.111 2.071 0.203 nan 1.627 0.922 0.149 0.125 0.085 0.028 0.092 0.870 0.017 0.907 0.068 0.033 7323 chr7 73180915 73186265 + 0 NA 3' UTR (NM_001306, exon 1 of 1) 3' UTR (NM_001306, exon 1 of 1) 1010 NM_001306 1365 Hs.647023 NM_001306 ENSG00000165215 CLDN3 C7orf1|CPE-R2|CPETR2|HRVP1|RVP1 claudin 3 protein-coding nan 2.516 0.922 3.844 4.735 2.114 2.118 0.114 0.103 4.070 1.786 7.541 5.588 0.439 0.128 4.725 6.743 1.782 nan 6.268 4.950 6.138 2.771 0.338 0.271 0.159 nan 6.664 10.144 1.418 1.581 2.809 5.270 2.935 2.235 0.150 0.681 3.192 1.676 6.186 10.698 0.499 0.933 2.118 7.541 0.273 0.857 2.429 0.045 7229 chr7 29228247 29249313 + 0 NA non-coding (NR_120522, exon 3 of 3) non-coding (NR_120522, exon 3 of 3) 1423 NM_001293072 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 2.669 2.704 4.903 2.540 1.673 0.818 0.572 0.148 0.100 2.068 1.257 1.685 5.739 0.056 0.156 3.727 4.465 0.626 nan 1.821 1.504 3.922 1.546 13.187 13.308 0.149 0.250 2.226 2.964 0.378 0.210 4.023 8.281 4.177 4.463 0.244 nan 2.746 1.386 1.197 1.069 1.158 2.282 0.572 1.685 0.214 0.861 4.322 0.083 1813 chr12 8178181 8192934 + 0 NA 5' UTR (NM_018416, exon 1 of 11) 5' UTR (NM_018416, exon 1 of 11) 198 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 2.066 nan nan 3.402 2.486 1.372 1.750 0.556 0.077 0.964 0.554 1.744 6.717 2.366 0.154 1.342 1.747 2.034 3.444 nan 4.511 4.577 1.536 3.418 3.404 1.827 2.264 1.623 2.029 2.454 2.087 1.256 2.284 1.492 1.783 1.557 nan 1.592 0.830 1.541 2.194 0.304 0.118 1.750 1.744 6.084 0.704 1.423 0.657 6896 chr6 108877956 108884639 + 0 NA promoter-TSS (NM_001455) promoter-TSS (NM_001455) 271 NM_201559 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 7.744 nan nan 8.702 5.332 2.542 5.678 3.445 0.364 1.274 0.601 4.429 9.838 4.125 0.181 8.757 9.811 6.262 8.416 7.141 nan 5.715 4.803 15.358 14.811 2.808 3.779 3.417 6.936 nan 8.781 3.791 7.197 7.166 6.950 6.711 6.854 1.892 0.983 2.431 7.299 2.757 3.836 5.678 4.429 1.416 3.645 3.326 3.445 7106 chr6 169764311 169772695 + 0 NA Intergenic Intergenic -114294 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 0.580 nan 0.805 0.839 0.245 0.077 1.221 0.045 0.019 0.169 0.080 1.273 1.778 0.063 0.063 0.305 0.212 0.198 0.425 0.599 0.706 10.207 2.530 0.204 0.183 0.074 0.154 0.490 0.536 nan 0.129 0.181 0.307 0.393 0.155 0.086 0.131 0.393 0.354 0.020 0.128 0.143 1.221 1.273 0.046 0.097 0.060 0.074 7371 chr7 91509116 91526493 + 0 NA Intergenic SVA_F|Other|Other -7770 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding nan 1.033 nan 0.410 0.591 0.341 0.627 0.545 0.129 0.405 0.276 0.482 0.867 0.499 0.178 0.985 0.890 0.458 0.682 0.826 0.812 2.575 0.756 1.090 1.149 0.707 0.988 0.770 0.717 2.029 2.206 0.661 1.010 1.419 1.138 2.447 nan 1.316 0.986 0.232 0.359 0.180 0.186 0.627 0.482 0.186 0.264 0.404 1.618 4472 chr2 113031846 113037059 + 0 NA intron (NM_198581, intron 1 of 11) intron (NM_198581, intron 1 of 11) 1274 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 4.926 nan 4.443 4.801 5.599 3.072 4.957 3.050 0.422 2.072 1.025 6.154 nan 3.197 0.159 6.524 5.056 5.932 7.825 10.811 nan 7.933 6.128 16.056 16.126 4.257 5.100 7.350 12.142 8.184 8.435 4.643 6.329 3.576 3.292 9.478 6.992 2.236 1.263 4.718 2.397 0.584 1.935 4.957 6.154 1.606 2.767 1.862 2.873 1889 chr12 29300296 29308954 + 0 NA intron (NM_001271783, intron 1 of 11) intron (NM_001271783, intron 1 of 11) 2689 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding nan nan nan 4.170 0.207 0.055 2.566 1.196 0.130 0.800 0.563 0.070 2.150 0.289 0.110 2.336 2.928 0.717 1.155 9.531 7.335 0.141 0.055 12.885 13.473 7.793 8.615 0.977 1.530 2.520 2.745 2.426 3.686 0.402 0.270 0.491 0.819 0.268 0.355 8.219 6.736 0.065 0.311 2.566 0.070 0.693 0.059 1.695 0.084 7414 chr7 103497046 103511977 + 0 NA intron (NM_173054, intron 2 of 63) MamRep137|DNA|TcMar? 125452 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding nan 1.278 1.154 0.683 0.885 0.420 0.180 0.166 0.050 2.393 1.056 0.836 2.030 0.055 0.159 0.436 0.337 0.633 1.000 1.150 1.572 1.884 1.244 1.582 1.461 0.484 0.643 2.267 2.728 0.815 0.585 0.484 0.515 1.803 1.745 0.667 nan 2.155 1.279 0.030 0.433 0.509 0.138 0.180 0.836 0.301 0.869 0.205 0.213 10 chr1 1163899 1174885 + 0 NA 3' UTR (NM_080605, exon 1 of 1) 3' UTR (NM_080605, exon 1 of 1) 1763 NM_080605 126792 Hs.284284 NM_080605 ENSG00000176022 B3GALT6 EDSP2|SEMDJL1|beta3GalT6 beta-1,3-galactosyltransferase 6 protein-coding 2.114 nan 2.179 2.375 1.115 0.699 0.782 0.863 0.191 0.707 0.263 0.731 2.037 1.372 0.094 3.256 4.496 1.644 2.804 3.181 3.133 1.379 0.627 6.189 6.240 1.835 nan nan 12.768 nan 1.409 2.112 3.409 0.921 0.894 1.769 1.442 1.268 0.759 1.165 1.353 0.086 5.197 0.782 0.731 0.419 0.835 0.686 0.573 5574 chr3 139839899 139873491 + 0 NA intron (NM_022131, intron 1 of 16) MIRc|SINE|MIR 202668 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 1.275 nan nan 0.199 0.618 0.424 0.205 0.146 0.148 0.216 0.212 0.256 0.237 0.026 0.083 0.738 0.463 2.554 1.191 0.568 0.619 8.442 2.411 0.213 0.250 3.263 3.964 0.314 0.285 nan 1.780 0.381 0.558 0.293 0.264 1.400 3.713 0.670 0.592 0.512 0.116 0.048 0.106 0.205 0.256 0.413 0.061 0.077 0.578 4111 chr19 47606293 47635808 + 0 NA Intergenic AluSx3|SINE|Alu -4041 NM_015168 23211 Hs.104661 NM_015168 ENSG00000130749 ZC3H4 C19orf7 zinc finger CCCH-type containing 4 protein-coding 3.799 2.330 3.022 2.067 2.959 1.511 2.650 1.726 0.424 1.680 0.742 3.241 3.414 2.739 0.179 3.383 3.021 3.601 4.817 5.237 5.119 5.225 3.310 9.343 10.386 3.153 4.112 3.979 6.126 3.536 3.211 4.423 5.918 3.123 3.774 4.192 4.827 2.525 1.259 3.037 3.973 0.818 1.263 2.650 3.241 0.902 1.232 3.821 1.703 4118 chr19 48315738 48333302 + 0 NA promoter-TSS (NM_000554) promoter-TSS (NM_000554) -577 NM_000554 1406 Hs.617342 NM_000554 ENSG00000105392 CRX CORD2|CRD|LCA7|OTX3 cone-rod homeobox protein-coding 1.139 0.774 1.124 0.076 0.316 0.238 0.079 0.068 0.118 0.055 0.066 0.061 0.212 0.161 0.112 0.165 0.171 0.175 0.271 0.295 0.333 0.290 0.174 0.261 0.327 0.194 0.380 0.142 0.226 1.257 0.791 0.141 0.158 0.084 0.114 3.108 10.542 0.363 0.423 0.025 0.035 0.016 0.032 0.079 0.061 0.022 0.029 0.061 4.030 4546 chr2 151313894 151354137 + 0 NA intron (NM_005168, intron 3 of 5) intron (NM_005168, intron 3 of 5) 10194 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding nan 0.695 nan 0.257 0.969 0.479 0.401 0.955 0.111 0.163 0.247 0.243 2.581 2.618 0.113 0.762 0.942 1.474 2.606 1.062 0.752 0.809 0.353 1.243 1.204 0.752 1.234 0.403 0.444 1.171 1.566 0.368 0.940 0.404 0.213 0.521 0.971 0.542 0.469 0.927 0.417 0.083 0.509 0.401 0.243 0.204 0.244 0.268 0.116 7461 chr7 121941449 121950900 + 0 NA non-coding (NR_036484, exon 3 of 7) non-coding (NR_036484, exon 3 of 7) -1609 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 3.048 0.761 1.121 0.445 0.908 0.524 1.041 0.071 0.089 0.215 0.240 1.565 2.666 0.034 0.099 6.024 8.588 2.392 2.197 2.390 1.492 1.711 0.608 0.481 0.421 0.073 0.172 0.390 0.568 1.612 1.729 0.247 0.463 3.411 2.115 0.390 0.765 0.811 0.495 0.041 0.624 1.041 1.677 1.041 1.565 1.385 0.054 0.031 0.146 1016 chr10 11044191 11079357 + 0 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) 1055 NM_001326345 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP, Elav-like family member 2 protein-coding nan 0.874 0.470 0.069 0.403 0.252 0.377 0.164 0.119 0.322 0.158 0.047 1.179 2.756 0.113 2.212 2.493 2.898 2.510 0.790 0.798 3.947 0.856 0.652 0.642 0.582 0.783 0.121 0.119 0.294 0.355 0.904 2.013 0.092 0.052 0.143 0.151 0.087 0.167 0.172 0.215 0.011 0.249 0.377 0.047 0.011 0.014 1.415 0.021 5319 chr3 5017536 5029801 + 0 NA intron (NM_003670, intron 4 of 4) intron (NM_003670, intron 4 of 4) -2022 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 2.656 5.174 1.835 0.343 1.576 0.829 1.629 3.547 0.162 0.999 0.659 0.215 6.735 6.935 0.122 0.549 2.369 1.935 5.354 2.871 1.938 0.317 0.182 3.322 3.331 0.693 0.992 1.595 2.337 1.615 2.729 1.731 3.104 2.587 2.703 1.384 3.062 0.349 0.280 1.084 1.496 1.004 1.314 1.629 0.215 0.412 4.490 2.295 1.164 945 chr1 239749802 239752771 + 0 NA intron (NM_001347716, intron 3 of 7) intron (NM_001347716, intron 3 of 7) -41087 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 0.801 1.485 1.602 0.393 0.371 0.320 1.045 0.073 0.052 0.230 0.202 0.327 0.111 0.116 5.553 3.695 19.595 4.697 0.264 0.322 nan 0.228 2.921 2.591 0.248 0.535 nan 0.203 0.304 0.150 1.044 2.403 0.058 0.033 0.210 0.325 nan 0.486 0.037 0.090 0.065 1.045 0.202 0.067 0.785 0.116 5284 chr22 42707193 42727046 + 0 NA Intergenic Intergenic -37186 NM_005650 6942 Hs.475018 NM_005650 ENSG00000100207 TCF20 AR1|SPBP|TCF-20 transcription factor 20 protein-coding 0.886 nan 0.956 0.670 1.741 0.885 1.648 0.079 0.033 0.440 0.200 1.437 6.088 0.165 0.071 1.508 2.340 0.401 0.528 2.144 1.673 3.911 0.934 0.250 0.311 0.726 nan 2.260 2.365 nan 0.641 0.936 1.692 3.075 3.537 0.265 0.484 1.775 0.950 2.708 1.060 0.878 0.088 1.648 1.437 0.464 2.332 1.309 0.155 3037 chr16 4320399 4324057 + 0 NA intron (NM_003223, intron 1 of 6) CpG 773 NM_003223 7023 Hs.513305 NM_003223 ENSG00000090447 TFAP4 AP-4|bHLHc41 transcription factor AP-4 protein-coding 7.821 nan 7.821 10.535 7.024 3.768 5.760 2.509 0.438 5.025 1.936 9.654 14.877 5.158 0.079 11.641 9.692 3.208 4.445 11.350 8.878 14.271 5.636 11.297 11.426 4.543 nan 10.599 15.072 15.420 20.063 3.147 5.153 9.981 7.610 11.168 10.042 4.498 2.429 6.602 7.705 2.148 4.941 5.760 9.654 2.599 3.731 3.055 4.848 4017 chr19 31293988 31305537 + 0 NA Intergenic Intergenic 436462 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 0.644 1.090 0.536 0.070 0.121 0.129 0.445 0.116 0.125 0.027 0.072 3.700 0.434 0.048 0.067 1.167 1.774 0.763 0.625 0.210 0.265 0.133 0.038 0.086 0.061 0.187 0.292 0.138 0.151 nan 0.072 0.550 0.984 0.028 0.100 0.258 0.466 0.554 0.477 0.715 0.393 0.008 0.445 3.700 0.035 0.631 0.156 6483 chr5 142773669 142786568 + 0 NA exon (NM_000176, exon 2 of 9) exon (NM_000176, exon 2 of 9) 3136 NM_000176 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding nan 2.313 2.383 2.069 1.390 0.823 1.117 2.652 0.225 0.753 0.267 1.663 12.351 0.866 0.085 0.187 0.091 0.548 0.759 4.222 3.754 2.584 1.335 3.672 3.520 5.362 6.359 4.879 6.085 5.201 5.591 1.845 1.968 2.745 2.707 2.262 3.832 1.640 0.884 2.124 4.691 0.913 1.494 1.117 1.663 1.268 4.282 0.762 0.903 3795 chr18 47369834 47386357 + 0 NA TTS (NR_117096) TTS (NR_117096) 37702 NR_117096 103091864 Hs.646459 NR_117096 ENSG00000267322 SNHG22 SCARNA17|SCARNA17HG small nucleolar RNA host gene 22 ncRNA nan 1.438 1.311 0.702 0.512 0.222 2.060 0.095 0.079 0.161 0.061 0.326 1.440 0.040 0.055 0.441 0.419 0.655 1.598 1.258 1.287 5.838 1.686 0.268 0.243 0.309 0.609 1.356 1.311 0.847 0.867 0.316 0.445 1.412 2.261 0.211 nan 2.629 2.189 1.925 0.255 0.306 0.179 2.060 0.326 0.597 0.258 0.144 0.112 8086 chr9 21982690 21998051 + 0 NA intron (NM_058195, intron 1 of 2) intron (NM_058195, intron 1 of 2) 4120 NM_058195 1029 Hs.512599 NM_000077 ENSG00000147889 CDKN2A ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16 cyclin dependent kinase inhibitor 2A protein-coding 3.229 8.233 nan 3.673 4.759 2.517 2.734 3.234 0.169 2.825 1.470 3.725 7.416 2.199 0.116 2.312 2.936 4.838 8.079 8.164 7.300 6.835 3.914 3.785 3.757 5.082 5.903 4.006 6.665 6.597 6.721 3.376 7.225 4.558 4.743 2.386 2.133 5.046 2.979 5.477 5.691 1.059 3.409 2.734 3.725 0.570 1.387 2.770 0.996 3146 chr16 54959715 54966556 + 0 NA promoter-TSS (NM_001308963) promoter-TSS (NM_001308963) -34 NR_034105 643911 Hs.237396 NM_001308963 CRNDE CRNDEP|LINC00180|NCRNA00180|PNAS-108|lincIRX5 colorectal neoplasia differentially expressed (non-protein coding) protein-coding 6.624 nan 6.821 6.110 2.623 1.431 7.502 1.985 0.140 0.272 0.059 4.236 12.761 2.804 0.073 1.735 1.831 1.458 1.788 8.238 4.999 7.593 3.553 8.011 7.340 1.877 nan nan nan nan 1.416 0.428 0.497 2.004 2.281 0.805 nan nan 1.079 3.381 2.504 0.485 3.357 7.502 4.236 0.866 2.349 0.158 0.054 1573 chr11 92331693 92348493 + 0 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 254831 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 0.686 nan 0.543 0.255 0.253 0.162 0.236 0.112 0.067 0.056 0.104 0.095 0.474 0.058 0.108 9.059 5.908 1.589 nan 0.383 0.560 0.150 0.110 13.371 14.016 0.738 0.994 1.225 0.807 0.381 0.185 6.307 7.142 0.553 0.776 0.298 nan 0.855 0.608 0.165 0.154 0.068 0.181 0.236 0.095 0.006 0.054 2.708 0.160 3725 chr18 31777340 31808141 + 0 NA intron (NM_001198546, intron 1 of 9) MLT1E1A|LTR|ERVL-MaLR 9694 NM_001198547 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding nan 1.018 0.860 1.700 1.016 0.624 1.812 0.054 0.078 1.028 0.755 2.356 2.932 0.144 0.081 0.862 0.725 0.548 0.570 5.522 5.004 3.484 1.805 0.372 0.374 0.701 0.925 nan 3.760 3.597 3.781 0.326 0.986 3.792 3.672 2.832 4.895 3.121 2.045 0.737 0.664 1.132 0.488 1.812 2.356 0.306 0.779 0.337 2.346 1772 chr12 3470845 3481796 + 0 NA Intergenic Intergenic -14195 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 1.198 nan nan 1.549 0.490 0.251 1.226 0.088 0.089 0.658 0.437 0.527 8.205 0.090 0.115 0.388 0.343 0.106 0.136 nan 0.765 4.266 1.267 0.717 0.645 0.212 0.385 4.339 5.631 0.584 0.568 0.616 1.034 0.782 0.647 0.638 nan 1.601 0.942 1.268 0.521 0.112 0.151 1.226 0.527 0.273 0.298 0.145 0.134 4174 chr2 2287972 2303123 + 0 NA intron (NM_001329851, intron 1 of 23) intron (NM_001329851, intron 1 of 23) -27457 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 0.596 0.738 0.601 0.147 0.493 0.295 0.430 0.069 0.054 0.433 0.321 0.649 1.995 0.050 0.107 0.391 0.546 0.343 0.367 0.731 0.869 0.995 0.380 0.237 0.174 0.778 1.045 1.086 1.113 0.693 0.465 0.320 0.360 0.390 0.447 0.572 1.060 1.353 0.798 4.227 0.404 0.070 0.134 0.430 0.649 0.258 0.323 0.084 0.017 5987 chr4 106551303 106560083 + 0 NA intron (NM_001242729, intron 4 of 13) intron (NM_001242729, intron 4 of 13) 72945 NR_046840 100874374 Hs.668908 NR_046840 ENSG00000249885 ARHGEF38-IT1 - ARHGEF38 intronic transcript 1 ncRNA 0.624 nan nan 0.650 0.378 0.276 0.233 0.264 0.091 0.179 0.131 0.232 0.906 0.025 0.078 1.060 1.346 6.972 11.711 0.269 0.261 0.140 0.048 0.210 0.196 0.656 nan 0.568 0.512 0.368 0.190 0.612 2.468 0.186 0.224 0.381 nan 0.486 0.333 0.019 0.072 0.033 0.054 0.233 0.232 0.011 0.208 2.158 0.098 2679 chr14 75715538 75728216 + 0 NA Intergenic Intergenic -23604 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 4.050 3.132 2.049 2.293 2.380 1.237 1.802 0.891 0.329 0.814 0.339 2.108 3.840 0.669 0.130 0.932 2.714 1.276 2.366 3.268 2.795 1.747 1.732 3.991 4.316 1.734 2.251 3.700 nan 3.330 3.621 1.084 2.363 5.221 4.297 2.689 2.461 4.475 nan 1.497 2.286 0.894 1.089 1.802 2.108 0.691 0.863 1.201 0.400 7668 chr8 49782256 49793545 + 0 NA Intergenic L1MD1|LINE|L1 46099 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 1.617 nan 1.756 0.039 0.175 0.063 0.251 0.193 0.102 1.102 0.351 0.053 0.564 0.039 0.087 0.403 0.268 0.232 0.412 0.752 0.634 5.320 2.027 0.201 0.131 0.395 0.726 0.093 0.065 0.464 0.302 0.259 0.407 4.157 4.864 0.223 0.477 2.388 1.167 0.025 0.063 1.326 0.049 0.251 0.053 0.102 0.134 0.061 0.100 3964 chr19 10981012 11010991 + 0 NA intron (NM_199141, intron 1 of 15) intron (NM_199141, intron 1 of 15) 13748 NM_199141 10498 Hs.323213 NM_199141 ENSG00000142453 CARM1 PRMT4 coactivator associated arginine methyltransferase 1 protein-coding 2.163 2.106 1.715 0.911 0.825 0.565 2.214 0.403 0.173 0.364 0.340 2.610 1.459 0.630 0.097 3.446 4.381 2.809 2.831 2.286 2.376 2.444 0.857 1.959 1.920 0.945 1.592 3.414 5.223 3.084 3.195 0.877 1.740 2.741 2.586 1.583 2.902 1.030 0.664 0.454 0.672 0.780 0.998 2.214 2.610 0.901 0.368 0.886 0.862 7928 chr8 128734377 128756397 + 0 NA intron (NR_117101, intron 1 of 1) intron (NR_117101, intron 1 of 1) 826 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility candidate 11 (non-protein coding) ncRNA 12.845 6.746 12.509 1.038 1.907 1.035 0.076 1.344 0.204 2.535 1.308 0.120 nan 1.339 0.124 9.004 10.657 2.952 4.798 1.017 0.847 3.075 1.050 nan nan 13.394 18.233 3.217 3.239 52.371 38.956 0.249 0.447 0.620 0.578 19.260 29.704 0.471 0.368 0.416 0.186 0.169 0.180 0.076 0.120 8.863 1.458 0.112 20.977 2344 chr13 73711959 73723120 + 0 NA Intergenic AluSx|SINE|Alu 84609 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding nan 2.354 0.743 1.172 1.035 0.656 1.066 0.565 0.164 0.110 0.117 1.944 4.488 0.204 0.113 0.513 0.375 0.534 1.312 1.222 1.118 nan 3.267 0.091 0.138 0.059 0.128 1.116 1.822 nan 0.163 0.240 0.564 0.079 0.113 0.351 nan 0.290 0.265 0.281 2.480 0.597 1.066 1.944 0.026 0.128 0.053 0.077 7751 chr8 73774781 73809621 + 0 NA intron (NM_004770, intron 2 of 2) L1HS|LINE|L1 -128896 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 2.087 1.137 4.790 2.135 0.585 0.267 0.411 0.103 0.074 0.989 0.471 2.082 1.231 0.050 0.082 0.459 0.523 0.312 0.386 3.988 4.165 3.634 1.191 0.744 0.748 1.122 1.802 2.412 2.548 2.761 2.330 0.251 0.409 2.785 3.106 0.933 3.247 3.975 1.931 0.329 0.535 0.814 0.313 0.411 2.082 0.125 2.754 0.097 0.691 3206 chr16 85533009 85733361 + 0 NA Intergenic Intergenic -11844 NM_001134473 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding nan 1.290 2.583 1.853 1.641 0.916 4.575 0.455 0.103 0.611 0.353 1.937 2.247 0.461 0.076 1.030 1.330 0.491 0.798 2.696 2.397 1.699 0.553 1.714 1.748 0.773 1.173 2.479 2.693 2.040 1.960 0.714 1.280 0.698 0.680 1.429 2.822 1.406 0.706 1.231 1.068 0.220 1.366 4.575 1.937 0.587 1.123 0.764 1.088 1779 chr12 4414972 4441816 + 0 NA Intergenic MIRc|SINE|MIR -1965 NM_020375 57103 Hs.504545 NM_020375 ENSG00000078237 TIGAR C12orf5|FR2BP TP53 induced glycolysis regulatory phosphatase protein-coding 1.083 nan nan 0.688 0.401 0.131 0.239 0.265 0.126 0.196 0.238 0.230 0.998 0.450 0.138 0.295 0.240 0.719 1.451 nan 0.798 0.822 0.215 0.653 0.653 0.743 1.168 0.491 0.693 0.718 0.589 0.354 0.586 0.364 0.303 1.411 nan 0.404 0.342 0.124 0.093 0.035 0.107 0.239 0.230 0.301 0.114 0.124 0.960 4563 chr2 160567431 160570521 + 0 NA promoter-TSS (NR_110586) promoter-TSS (NR_110586) 8 NM_001282806 64844 Hs.529272 NM_022826 ENSG00000136536 MARCH7 AXO|AXOT|MARCH-VII|RNF177 membrane associated ring-CH-type finger 7 protein-coding 7.716 4.889 7.405 6.563 10.008 4.824 5.658 4.311 0.258 2.827 2.098 7.820 11.925 5.063 0.171 6.061 6.691 13.095 18.197 10.971 10.313 7.115 3.397 20.826 22.004 6.740 8.674 8.529 14.117 8.817 9.497 4.583 10.223 5.042 5.476 12.047 10.661 3.397 1.980 6.960 4.734 1.104 3.171 5.658 7.820 1.691 1.689 3.163 2.973 1807 chr12 7281792 7284104 + 0 NA promoter-TSS (NM_014718) promoter-TSS (NM_014718) -19 NM_014718 9746 Hs.535378 NM_014718 ENSG00000139182 CLSTN3 CDHR14|CSTN3|alcbeta calsyntenin 3 protein-coding 2.839 nan 3.543 2.964 3.038 1.315 1.104 0.403 0.069 2.046 0.522 3.906 9.564 2.168 0.150 1.451 2.665 3.805 3.806 9.343 7.793 13.361 5.183 5.988 6.184 2.160 3.041 3.287 4.252 2.258 1.994 1.619 3.293 2.903 1.610 1.640 nan 2.118 1.037 2.013 3.807 0.248 1.611 1.104 3.906 7.285 1.597 1.204 0.637 5472 chr3 114111722 114141429 + 0 NA intron (NM_001164343, intron 8 of 11) intron (NM_001164343, intron 8 of 11) -24086 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 1.113 nan 1.006 0.176 0.780 0.497 0.456 1.170 0.132 0.360 0.316 3.191 1.070 0.019 0.083 1.840 2.549 3.160 4.324 2.514 nan 2.565 0.999 0.287 0.298 nan 2.735 0.297 0.339 0.678 0.335 1.536 2.134 0.146 0.205 0.508 1.056 1.488 1.114 0.325 1.104 0.026 0.107 0.456 3.191 0.094 0.178 1.662 0.391 7397 chr7 96366805 96374252 + 0 NA Intergenic Intergenic -31325 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1, 26S proteasome complex subunit protein-coding nan 1.019 nan 0.200 0.746 0.261 0.528 0.142 0.021 0.880 0.594 0.241 0.482 0.058 0.195 0.307 0.295 0.766 0.480 0.456 0.531 2.032 0.753 0.233 0.225 0.262 0.538 0.259 0.228 0.355 0.145 0.288 0.250 7.559 9.960 0.324 nan 1.834 1.276 0.033 0.166 2.245 0.087 0.528 0.241 0.027 0.027 0.105 0.182 1073 chr10 25000604 25013664 + 0 NA intron (NM_020824, intron 2 of 25) intron (NM_020824, intron 2 of 25) 5463 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 1.853 1.983 2.867 0.881 1.853 0.967 0.744 4.394 0.535 0.577 0.342 2.143 3.559 1.501 0.097 2.913 4.518 1.869 2.643 2.092 1.799 3.714 2.064 2.002 1.836 2.826 3.300 1.083 1.804 2.019 2.185 1.521 3.978 0.990 0.941 3.709 5.682 0.967 0.593 1.042 1.332 0.138 4.070 0.744 2.143 0.268 0.862 1.564 3.342 8279 chr9 129986109 130028059 + 0 NA Intergenic Intergenic -18857 NM_001286779 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding nan nan 1.347 0.422 0.412 0.252 0.249 0.159 0.112 0.187 0.131 0.354 nan 0.204 0.095 0.345 0.340 0.465 0.612 0.726 0.765 nan 0.285 0.708 0.732 0.413 nan 0.683 0.964 1.244 0.863 0.213 0.304 0.287 0.281 1.136 2.520 nan 0.582 0.139 0.153 0.069 0.135 0.249 0.354 0.141 0.253 0.048 0.443 3860 chr18 59992537 60000448 + 0 NA intron (NM_003839, intron 1 of 9) intron (NM_003839, intron 1 of 9) 3972 NM_001270949 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding nan 1.094 1.082 1.553 0.728 0.547 0.776 0.153 0.060 1.069 0.358 0.781 1.769 0.181 0.086 0.777 0.685 1.044 1.787 2.617 2.373 7.707 1.821 2.210 2.205 1.163 1.506 1.542 2.169 0.931 1.300 0.351 0.548 1.937 2.090 0.437 0.805 nan 3.662 0.171 0.596 0.383 0.221 0.776 0.781 0.283 0.320 0.012 0.248 6362 chr5 91438908 91454017 + 0 NA Intergenic Intergenic -767272 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding nan 7.922 0.544 0.397 0.248 0.095 0.736 0.139 0.084 0.072 0.093 0.241 0.079 0.111 0.203 0.146 0.813 0.636 0.253 0.408 0.272 0.165 0.124 0.152 0.245 0.452 0.216 0.222 0.447 0.133 0.110 0.190 1.468 1.220 0.234 nan 0.268 0.185 0.058 0.064 0.592 0.037 0.736 0.007 0.047 0.071 0.083 4240 chr2 17794107 17811240 + 0 NA intron (NM_003385, intron 2 of 3) AluSz|SINE|Alu 80866 NM_003385 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 0.633 0.653 0.622 0.072 0.202 0.122 1.367 0.086 0.054 0.093 0.148 0.082 0.700 0.038 0.096 0.746 1.114 4.521 8.947 0.218 0.295 0.377 0.092 0.262 0.254 0.829 1.212 0.264 nan 0.507 0.260 0.477 0.512 0.067 0.053 0.179 nan 0.498 0.606 0.470 0.078 0.023 0.020 1.367 0.082 0.039 0.041 0.161 0.173 1339 chr11 20177583 20189681 + 0 NA Intergenic Intergenic -1762 NM_001029865 120237 Hs.558604 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 0.598 0.697 0.441 0.409 1.418 0.527 0.232 0.057 0.068 0.130 0.089 0.171 0.326 0.018 0.069 0.422 0.300 0.114 0.176 0.591 0.597 1.691 0.362 0.156 0.178 0.499 0.742 0.998 1.498 0.708 0.535 0.180 0.272 0.236 0.206 0.174 0.506 0.631 0.560 0.115 0.055 0.047 6.137 0.232 0.171 0.049 0.017 0.041 0.255 8335 chr9 139117543 139142959 + 0 NA intron (NM_181701, intron 1 of 11) intron (NM_181701, intron 1 of 11) 7436 NM_181701 169714 Hs.144073 NM_181701 ENSG00000165661 QSOX2 QSCN6L1|SOXN quiescin sulfhydryl oxidase 2 protein-coding nan 0.942 5.425 1.111 0.551 0.262 0.680 0.236 0.089 0.702 0.355 3.025 1.642 0.248 0.075 1.250 1.865 0.446 0.729 4.486 4.355 nan 0.554 0.357 0.314 0.902 1.286 1.464 1.958 1.829 1.786 0.609 0.944 1.316 1.561 0.687 0.669 1.307 0.743 1.638 1.083 0.490 1.359 0.680 3.025 0.692 0.497 0.315 0.136 1581 chr11 93469908 93479282 + 0 NA promoter-TSS (NM_001286067) promoter-TSS (NM_001286067) 108 NM_024116 79101 Hs.355750 NM_024116 ENSG00000166012 TAF1D JOSD3|RAFI41|TAF(I)41|TAFI41 TATA-box binding protein associated factor, RNA polymerase I subunit D protein-coding 1.943 nan 1.480 2.608 2.628 1.300 1.774 0.563 0.119 1.445 0.771 2.473 5.222 2.846 0.179 10.239 9.677 3.896 nan 4.936 5.096 5.227 2.752 13.864 14.357 3.596 4.376 5.122 6.801 5.345 5.744 4.746 7.514 3.747 4.401 5.523 nan 2.663 1.420 1.874 2.099 0.632 1.298 1.774 2.473 0.599 1.474 2.250 2.050 3997 chr19 18524652 18551630 + 0 NA intron (NM_001009998, intron 1 of 16) intron (NM_001009998, intron 1 of 16) 7995 NM_001009998 170463 Hs.515259 NM_032627 ENSG00000130511 SSBP4 - single stranded DNA binding protein 4 protein-coding 3.708 1.874 1.676 1.220 3.900 1.880 2.904 0.389 0.084 0.613 0.333 1.206 2.335 2.669 0.096 1.327 2.277 1.107 1.868 2.244 2.135 3.083 1.381 1.711 1.854 0.935 1.464 2.904 4.422 2.896 2.700 0.836 1.496 2.138 1.749 3.395 4.292 2.220 1.186 1.660 1.151 0.490 0.256 2.904 1.206 0.921 1.402 0.856 1.380 4592 chr2 171778064 171788384 + 0 NA Intergenic AluJb|SINE|Alu -1724 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 2.665 2.498 3.600 3.122 1.945 1.178 1.293 0.870 0.124 1.090 0.669 1.670 3.779 1.419 0.087 2.160 2.439 2.680 3.696 2.484 2.376 4.537 1.769 10.314 10.634 1.626 2.334 7.648 10.352 2.793 3.399 1.938 2.771 1.573 1.719 3.621 4.033 1.651 0.872 1.793 0.915 0.147 0.751 1.293 1.670 0.480 0.662 0.808 0.890 3417 chr17 41545039 41562946 + 0 NA Intergenic Intergenic -7241 NM_001322219 1659 Hs.463105 NM_004941 ENSG00000067596 DHX8 DDX8|HRH1|PRP22|PRPF22 DEAH-box helicase 8 protein-coding 2.556 1.703 nan 0.997 1.138 0.698 0.636 0.615 0.190 0.529 0.429 0.555 1.574 0.407 0.104 1.039 0.890 1.152 1.761 1.675 nan 1.232 0.452 2.026 2.118 2.111 2.583 1.070 nan 3.877 2.966 0.699 1.012 2.256 3.297 1.349 5.163 1.173 0.749 0.358 0.418 1.158 0.311 0.636 0.555 0.546 0.554 0.228 1.595 3626 chr17 80737363 80771635 + 0 NA intron (NM_005993, intron 7 of 38) intron (NM_005993, intron 7 of 38) 43432 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 0.810 0.730 0.846 0.317 0.562 0.232 0.531 0.157 0.127 0.397 0.284 5.393 4.718 0.133 0.090 0.530 nan 0.438 0.707 nan 2.347 0.451 0.180 0.490 0.492 0.395 0.700 3.849 5.524 0.145 0.127 0.376 0.491 0.138 0.198 0.222 0.480 1.212 0.599 1.840 3.239 0.036 0.095 0.531 5.393 0.073 0.118 0.089 0.091 1731 chr11 129142176 129170300 + 0 NA Intergenic Intergenic -89643 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 0.956 1.081 2.540 2.088 1.327 0.650 0.474 0.106 0.017 1.043 0.779 1.532 3.807 1.220 0.119 1.791 1.780 0.812 0.776 1.690 1.680 2.910 0.859 0.892 0.850 0.843 1.171 6.739 7.500 1.090 1.173 2.594 4.950 1.936 1.702 0.763 nan 2.278 1.185 0.458 0.656 0.373 0.181 0.474 1.532 0.117 1.682 3.131 0.210 4275 chr2 28611955 28621228 + 0 NA exon (NM_005253, exon 1 of 4) exon (NM_005253, exon 1 of 4) 812 NM_005253 2355 Hs.220971 NM_005253 ENSG00000075426 FOSL2 FRA2 FOS like 2, AP-1 transcription factor subunit protein-coding 3.048 2.283 3.259 4.655 4.211 2.047 3.642 4.792 0.320 1.703 0.792 2.142 14.570 8.455 0.187 1.654 2.721 3.181 8.427 3.361 2.944 4.386 1.587 7.809 7.891 2.193 3.084 4.049 nan 4.327 5.719 0.753 1.754 2.702 2.109 0.319 0.637 1.655 0.860 4.068 2.200 0.492 4.293 3.642 2.142 2.192 3.770 0.313 0.533 4175 chr2 2321284 2338416 + 0 NA promoter-TSS (NM_001329847) promoter-TSS (NM_001329847) 93 NM_001329847 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 0.736 1.235 0.606 0.258 6.848 3.606 3.911 0.083 0.075 4.952 2.703 6.345 22.148 0.038 0.098 3.735 5.806 0.143 0.120 12.578 11.806 7.053 5.021 0.121 0.107 5.504 6.387 5.916 7.583 7.938 9.625 0.829 1.561 5.496 4.501 2.395 2.660 5.305 2.823 6.881 0.406 1.128 1.207 3.911 6.345 2.624 2.835 1.028 0.080 2832 chr15 31616662 31622507 + 0 NA exon (NM_001302461, exon 1 of 2) exon (NM_001302461, exon 1 of 2) 526 NM_015995 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 4.373 nan nan 4.592 6.085 3.273 3.931 3.074 0.327 3.644 1.490 9.857 11.395 2.963 0.093 5.424 7.739 3.739 6.008 8.451 6.073 5.498 1.352 8.284 7.477 1.753 2.412 5.228 9.041 5.678 7.974 2.304 5.036 7.181 5.531 1.818 2.266 0.936 0.532 3.511 6.340 2.992 4.787 3.931 9.857 2.285 4.486 2.511 0.785 3271 chr17 8149028 8154199 + 0 NA promoter-TSS (NR_046431) promoter-TSS (NR_046431) -200 NM_025099 80169 Hs.156055 NM_025099 ENSG00000178971 CTC1 AAF-132|AAF132|C17orf68|CRMCC|tmp494178 CST telomere replication complex component 1 protein-coding 7.719 3.462 3.907 4.228 5.350 2.407 4.684 1.334 0.744 2.265 1.100 5.981 8.174 2.209 0.127 6.913 6.193 6.023 8.930 9.908 6.401 15.136 6.950 13.284 13.516 4.394 6.095 9.499 14.418 4.691 5.790 1.912 2.896 7.493 6.274 10.134 12.484 1.816 0.979 2.143 3.434 1.043 1.171 4.684 5.981 2.153 4.124 0.940 4.037 4136 chr19 50174974 50184276 + 0 NA promoter-TSS (NM_001207042) promoter-TSS (NM_001207042) -784 NM_001207042 3276 Hs.20521 NM_001536 ENSG00000126457 PRMT1 ANM1|HCP1|HRMT1L2|IR1B4 protein arginine methyltransferase 1 protein-coding 3.338 1.723 3.069 2.148 4.251 2.477 2.119 1.341 0.225 1.129 0.615 2.307 3.358 3.263 0.145 2.588 2.622 2.469 4.036 3.619 4.122 6.281 3.173 7.652 8.248 2.231 3.057 5.767 7.412 7.671 7.046 1.760 2.692 4.926 4.994 4.573 8.174 2.805 1.582 1.488 4.312 0.983 0.882 2.119 2.307 1.031 1.302 0.883 2.157 369 chr1 72128922 72143910 + 0 NA intron (NM_173808, intron 4 of 6) L1MEg|LINE|L1 166279 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA nan 0.767 0.933 0.211 0.478 0.219 0.153 0.060 0.084 1.120 0.653 3.316 0.588 0.029 0.132 0.325 0.226 0.225 0.291 0.765 nan 6.872 2.471 0.390 0.378 1.970 nan 0.455 0.488 0.418 0.164 0.219 0.198 1.042 0.782 0.430 0.920 1.043 0.754 0.108 0.349 0.265 0.048 0.153 3.316 0.007 0.075 0.059 0.139 1014 chr10 10829171 10848021 + 0 NA promoter-TSS (NM_001326325) promoter-TSS (NM_001326325) -183 NM_001326325 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP, Elav-like family member 2 protein-coding nan 0.588 0.483 0.070 0.166 0.173 0.245 1.467 0.162 0.049 0.095 0.032 0.302 5.336 0.183 0.543 0.580 1.304 1.326 0.244 0.382 0.227 0.108 0.229 0.255 0.441 0.783 0.104 0.105 0.234 0.112 0.118 0.236 0.037 0.032 0.194 0.303 0.102 0.158 0.003 0.052 0.015 0.116 0.245 0.032 0.005 0.021 0.057 0.032 843 chr1 211498345 211511492 + 0 NA intron (NM_001033910, intron 1 of 10) intron (NM_001033910, intron 1 of 10) 4770 NM_001033910 7188 Hs.523930 NM_004619 ENSG00000082512 TRAF5 MGC:39780|RNF84 TNF receptor associated factor 5 protein-coding 2.733 2.144 3.702 0.335 0.930 0.388 1.666 0.872 0.159 0.898 0.415 1.056 nan 0.580 0.084 0.522 0.686 3.226 4.113 1.336 1.232 nan 2.075 1.652 1.642 0.697 nan 1.795 1.797 0.599 0.503 0.943 1.620 2.197 1.989 1.124 2.824 1.437 1.193 0.063 0.041 0.320 0.367 1.666 1.056 0.223 0.602 1.121 0.671 2315 chr13 53310621 53338450 + 0 NA Intergenic Intergenic -10588 NM_001011705 11061 Hs.421391 NM_007015 ENSG00000136110 CNMD BRICD3|CHM-I|CHM1|LECT1|MYETS1 chondromodulin protein-coding 0.902 nan nan 0.095 0.225 0.057 0.161 0.062 0.058 0.271 0.162 0.320 0.706 0.039 0.078 0.950 0.502 0.459 0.441 0.562 0.701 6.213 1.777 0.115 0.145 0.545 0.987 0.666 0.652 1.061 0.997 0.482 0.689 1.156 0.928 1.019 nan 0.703 0.390 1.190 0.517 0.206 0.125 0.161 0.320 0.123 0.175 0.183 0.483 4677 chr2 205407152 205420168 + 0 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 3144 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 1.199 nan 1.919 0.498 1.219 0.654 0.500 0.526 0.107 0.355 0.140 0.913 1.878 0.091 0.094 0.852 0.652 1.488 2.299 1.316 1.135 0.842 0.300 17.814 18.140 0.611 0.826 1.216 1.674 0.401 0.234 0.356 0.506 0.255 0.164 0.204 0.269 0.609 0.466 0.621 0.232 0.112 1.348 0.500 0.913 0.142 0.047 0.061 0.057 1994 chr12 64328267 64337350 + 0 NA intron (NM_020762, intron 1 of 21) AluJo|SINE|Alu 94275 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 0.956 0.773 0.899 0.322 1.040 0.567 0.421 0.247 0.054 0.964 0.676 0.369 1.025 0.284 0.095 4.334 3.250 1.816 3.052 0.420 nan 2.216 0.611 0.621 0.714 4.151 4.399 0.846 0.699 6.275 6.260 0.683 0.945 2.522 3.057 0.378 0.769 2.203 1.390 0.085 0.224 0.518 3.712 0.421 0.369 0.235 0.552 0.489 0.432 1382 chr11 34699383 34708255 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity 49808 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 0.547 2.036 nan 0.418 0.380 0.181 0.332 0.344 0.127 0.263 0.159 0.643 0.825 0.037 0.114 0.549 0.629 1.334 4.767 0.423 0.438 10.733 4.748 0.317 0.280 0.246 0.421 0.440 0.487 0.276 0.122 0.136 0.255 0.384 0.835 0.145 nan 0.456 0.296 0.287 0.101 0.054 0.081 0.332 0.643 0.065 0.103 0.022 0.096 5771 chr3 190651516 190661400 + 0 NA Intergenic L1MD2|LINE|L1 60739 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small ILF3/NF90-associated RNA I snRNA 3.224 1.149 0.990 0.213 0.302 0.113 0.079 0.122 0.116 0.096 0.158 0.048 nan 0.131 0.111 1.033 1.465 1.359 0.386 0.213 0.378 0.580 0.197 0.472 0.327 0.211 0.327 0.377 0.509 14.369 13.542 0.666 1.055 0.301 0.337 0.973 2.339 0.238 0.349 0.028 0.117 0.223 0.024 0.079 0.048 0.020 0.051 0.459 0.688 4265 chr2 25620241 25628254 + 0 NA intron (NM_001256308, intron 14 of 17) intron (NM_001256308, intron 14 of 17) -58788 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 2.812 1.312 4.846 0.835 0.590 0.199 2.544 0.102 0.128 4.172 2.217 0.852 3.950 0.067 0.155 0.858 1.798 0.314 0.403 9.449 7.923 11.133 4.531 0.649 0.820 3.017 3.529 2.040 nan 3.760 5.135 0.287 0.333 3.758 3.227 0.931 1.787 4.453 2.291 2.160 2.582 1.152 5.620 2.544 0.852 2.093 0.241 0.123 0.552 7569 chr7 158603395 158667352 + 0 NA Intergenic Intergenic -13054 NM_020728 57488 Hs.490795 NM_020728 ENSG00000117868 ESYT2 CHR2SYT|E-Syt2|FAM62B extended synaptotagmin 2 protein-coding 1.309 0.751 nan 0.633 0.981 0.542 0.409 0.708 0.202 0.460 0.333 0.961 2.217 0.711 0.182 0.889 1.090 0.755 1.296 1.441 1.474 1.156 0.470 0.540 0.593 0.541 0.773 2.652 2.811 0.739 0.754 0.573 0.891 0.849 0.781 0.738 1.134 1.127 0.805 0.463 2.941 0.153 0.220 0.409 0.961 0.143 0.384 0.193 0.324 208 chr1 36688292 36692649 + 0 NA intron (NM_005119, intron 1 of 11) intron (NM_005119, intron 1 of 11) 453 NM_005119 9967 Hs.744057 NM_005119 ENSG00000054118 THRAP3 TRAP150 thyroid hormone receptor associated protein 3 protein-coding 5.337 nan 4.100 7.940 3.686 1.905 2.507 4.137 0.554 2.586 1.186 5.737 9.171 5.371 0.121 3.488 2.894 6.728 9.272 9.141 7.939 nan 2.613 11.718 12.902 4.933 5.883 11.099 17.923 nan 4.229 4.118 6.545 2.188 3.096 5.811 5.402 2.779 nan 3.069 2.169 0.418 1.878 2.507 5.737 0.649 2.139 1.885 1.391 6455 chr5 134868635 134883280 + 0 NA Intergenic Intergenic -4318 NM_006161 4762 Hs.248149 NM_006161 ENSG00000181965 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 1.617 0.961 nan 0.132 0.341 0.131 0.378 0.055 0.011 0.043 0.062 0.606 0.746 0.081 0.104 0.371 0.308 0.406 0.558 0.734 0.974 0.788 0.285 0.203 0.297 0.523 0.846 0.156 0.174 3.609 3.132 0.272 0.252 0.248 0.143 3.457 7.025 0.248 0.321 0.129 1.264 0.020 0.302 0.378 0.606 0.153 0.028 0.048 3.897 7232 chr7 29464045 29483756 + 0 NA intron (NM_001293071, intron 5 of 11) intron (NM_001293071, intron 5 of 11) -45428 NM_001293076 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 1.653 1.141 1.448 0.244 0.464 0.146 0.267 0.109 0.114 0.596 0.217 0.518 0.435 0.077 0.164 0.502 0.557 0.327 nan 0.368 0.546 0.904 0.649 0.600 0.544 0.169 0.327 0.563 1.128 0.424 0.228 0.314 0.508 0.195 0.270 1.157 nan 0.724 0.426 0.040 0.181 0.044 0.366 0.267 0.518 0.089 0.113 0.381 2.193 7886 chr8 115597447 115602609 + 0 NA Intergenic Intergenic 1080211 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding nan nan 0.914 2.396 2.680 1.304 0.201 0.167 0.093 0.182 0.095 6.494 0.644 0.063 0.076 2.942 3.868 0.108 0.076 0.363 0.439 nan 0.207 20.052 nan 0.407 nan 5.145 7.485 0.280 0.133 3.578 5.472 0.151 0.177 0.228 0.366 0.416 0.591 0.115 0.308 0.056 0.278 0.201 6.494 0.031 2.901 1.642 0.023 5479 chr3 114858906 114868323 + 0 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) 2513 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 4.463 nan 2.808 2.201 4.044 2.095 2.067 2.727 0.176 1.895 0.780 3.207 3.465 1.687 0.120 2.416 3.650 4.177 4.690 5.360 nan 5.160 2.648 4.436 5.047 nan 5.709 2.065 3.585 7.116 7.826 1.166 2.354 2.013 1.688 2.975 4.502 1.758 1.216 2.993 2.183 0.436 1.329 2.067 3.207 0.959 1.432 1.304 2.481 1970 chr12 57021546 57032342 + 0 NA intron (NM_013449, intron 1 of 28) intron (NM_013449, intron 1 of 28) -2829 NM_001300905 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding nan 2.606 2.737 2.770 2.800 1.782 2.079 2.784 0.343 2.371 1.070 2.802 6.997 1.839 0.080 nan 3.892 3.135 4.870 5.323 nan 5.476 1.944 5.590 6.089 2.208 nan 5.492 nan 4.660 4.092 1.434 3.327 2.345 2.534 4.018 8.714 2.770 1.291 0.938 4.798 0.804 1.240 2.079 2.802 0.929 2.077 1.530 3.319 4125 chr19 48891695 48905844 + 0 NA intron (NM_000836, intron 1 of 12) intron (NM_000836, intron 1 of 12) 637 NM_000836 2906 Hs.445015 NM_000836 ENSG00000105464 GRIN2D EB11|EIEE46|GluN2D|NMDAR2D|NR2D glutamate ionotropic receptor NMDA type subunit 2D protein-coding 2.487 1.455 2.004 1.170 2.975 1.872 1.949 0.645 0.212 0.539 0.260 1.576 2.828 2.773 0.108 1.458 2.177 1.824 2.836 3.175 3.109 9.159 3.609 4.818 5.391 2.822 3.794 2.819 3.983 3.759 2.741 1.704 2.084 1.699 1.986 2.581 4.461 2.440 1.354 0.912 3.002 0.626 0.636 1.949 1.576 1.234 1.340 0.641 1.177 3491 chr17 60876956 60887314 + 0 NA intron (NM_152598, intron 1 of 10) intron (NM_152598, intron 1 of 10) 1879 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 1.725 nan 0.826 0.604 3.188 1.753 1.635 0.159 0.109 0.678 0.308 5.069 2.463 0.137 0.088 2.527 3.558 1.786 1.980 2.286 1.839 1.631 0.518 4.061 4.385 0.282 nan 6.240 8.531 1.292 1.015 0.891 1.177 0.710 0.840 0.395 0.493 1.241 0.921 0.360 3.585 0.073 1.520 1.635 5.069 0.177 1.205 0.295 0.079 47 chr1 6496411 6559940 + 0 NA exon (NM_001265592, exon 21 of 22) exon (NM_001265592, exon 21 of 22) -1920 NM_148970 8718 Hs.462529 NM_003790 ENSG00000215788 TNFRSF25 APO-3|DDR3|DR3|LARD|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR TNF receptor superfamily member 25 protein-coding 1.335 nan 1.426 2.117 1.272 0.729 0.360 0.123 0.121 0.390 0.298 1.270 1.324 0.370 0.105 2.797 4.527 1.299 1.466 3.235 2.935 1.362 0.446 8.005 8.159 0.351 nan nan 3.878 nan 0.551 2.897 4.186 0.480 0.371 0.389 0.676 0.945 0.528 2.207 1.732 0.083 0.285 0.360 1.270 0.446 0.278 2.683 0.066 3619 chr17 79815488 79832689 + 0 NA Intergenic Intergenic 4762 NM_001185077 396 Hs.159161 NM_004309 ENSG00000141522 ARHGDIA GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1 Rho GDP dissociation inhibitor alpha protein-coding 3.883 3.075 3.968 3.431 5.531 3.122 5.763 2.212 0.431 3.647 1.595 4.168 6.140 3.578 0.137 4.457 4.937 3.114 4.979 5.470 4.683 4.716 2.682 6.555 6.388 nan 4.245 4.492 7.056 5.762 6.564 2.674 5.041 3.866 4.295 3.927 4.578 nan 1.431 1.488 2.676 0.856 1.995 5.763 4.168 0.941 3.354 1.012 1.801 6296 chr5 67726613 67756481 + 0 NA Intergenic Intergenic 153151 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 0.667 1.855 0.561 0.148 0.232 0.129 0.283 0.226 0.086 0.071 0.077 0.076 0.779 0.047 0.125 0.294 0.219 2.144 3.935 0.285 0.314 0.155 0.098 0.170 0.183 0.468 0.610 0.366 0.411 0.480 0.214 0.125 0.184 0.162 0.264 0.182 0.507 0.384 0.418 0.183 0.173 0.024 0.048 0.283 0.076 0.036 0.041 0.053 0.100 1529 chr11 76015992 76029246 + 0 NA Intergenic LTR16A|LTR|ERVL 69390 NM_004705 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding nan 0.771 0.545 0.695 0.282 0.170 0.116 0.095 0.073 0.106 0.126 0.247 5.860 0.140 0.105 0.560 0.389 0.246 0.311 1.021 1.261 0.566 0.227 0.733 0.955 0.379 0.699 0.526 0.731 0.562 0.395 0.390 0.418 0.219 0.251 0.191 0.322 1.375 0.795 4.835 0.116 0.044 0.030 0.116 0.247 0.043 0.110 0.060 0.075 1353 chr11 26606043 26622849 + 0 NA intron (NM_031418, intron 14 of 26) HERV17-int|LTR|ERV1 -20631 NM_001135091 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 0.609 1.100 0.709 0.163 0.170 0.095 0.199 0.062 0.106 0.196 0.086 0.385 0.469 0.052 0.067 0.563 0.377 0.212 0.411 0.246 0.300 7.906 5.669 0.264 0.272 0.295 0.446 2.986 4.410 0.400 0.225 0.114 0.193 0.434 0.606 0.253 0.404 3.330 2.105 0.038 0.148 0.078 0.033 0.199 0.385 0.487 0.024 0.047 0.119 6671 chr6 25358967 25372634 + 0 NA intron (NM_001173977, intron 2 of 36) AluSz6|SINE|Alu 86144 NM_001173977 55604 Hs.649550 NM_017640 ENSG00000079691 CARMIL1 CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 capping protein regulator and myosin 1 linker 1 protein-coding 2.086 1.447 nan 1.262 0.789 0.586 0.392 0.974 0.129 0.423 0.204 0.850 nan 0.128 0.084 2.189 2.806 1.069 nan 0.499 0.418 nan 1.173 0.590 0.650 1.832 2.878 1.746 1.894 1.536 1.097 0.451 0.922 3.592 4.729 1.367 3.316 1.686 0.990 0.953 0.469 0.981 0.104 0.392 0.850 0.579 0.913 0.163 1.041 4306 chr2 42586065 42600257 + 0 NA intron (NM_001319036, intron 1 of 3) intron (NM_001319036, intron 1 of 3) 2936 NM_001319037 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 3.493 nan 2.217 1.687 1.204 0.511 1.079 0.731 0.067 1.625 0.961 1.321 2.759 1.068 0.159 1.525 1.603 1.636 2.418 nan 2.274 3.783 1.336 4.306 4.655 2.139 2.789 3.287 3.727 3.233 2.695 1.373 2.210 1.345 1.499 1.983 nan nan 1.523 0.689 1.229 0.364 0.437 1.079 1.321 0.898 1.888 0.490 0.554 6224 chr5 32582518 32588057 + 0 NA promoter-TSS (NM_006713) promoter-TSS (NM_006713) -318 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 homolog, transcriptional regulator protein-coding 3.377 3.655 nan 5.489 2.349 1.635 2.140 8.354 2.020 3.573 1.927 8.147 7.291 2.841 0.107 3.340 4.002 3.589 4.940 5.726 4.918 3.576 2.153 7.410 7.105 3.703 4.581 4.098 6.266 5.849 5.928 3.085 4.925 3.083 3.343 2.137 2.120 2.774 1.611 0.804 2.680 0.849 0.991 2.140 8.147 1.243 3.261 2.012 0.513 5098 chr21 34660977 34698460 + 0 NA Intergenic LTR47B|LTR|ERVL -17496 NM_000629 3454 Hs.529400 NM_000629 ENSG00000142166 IFNAR1 AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC interferon alpha and beta receptor subunit 1 protein-coding 1.386 1.029 1.561 0.969 0.815 0.436 0.547 0.339 0.064 0.373 0.218 0.902 2.305 0.353 0.085 0.931 1.046 0.973 1.286 1.977 1.644 1.136 0.427 1.460 1.479 0.687 1.065 3.559 3.045 1.722 1.491 0.591 0.914 1.071 1.038 0.886 1.245 nan 1.206 0.559 0.925 0.221 0.346 0.547 0.902 0.332 0.895 0.316 0.474 6414 chr5 118650735 118665947 + 0 NA intron (NM_001286815, intron 2 of 2) L2b|LINE|L2 -10529 NM_001286814 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 1.587 1.755 1.187 0.362 0.685 0.346 0.472 0.827 0.176 0.400 0.339 0.039 2.160 0.174 0.115 0.248 0.143 0.480 1.685 0.562 0.696 1.678 0.399 0.143 0.155 2.010 nan 1.107 1.342 1.345 1.081 0.120 0.200 3.546 5.239 0.332 1.359 1.896 0.978 0.762 0.146 1.236 0.400 0.472 0.039 0.400 0.206 0.020 0.356 1376 chr11 33911452 33921026 + 0 NA Intergenic Intergenic -2403 NM_005574 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 1.542 2.769 nan 1.489 4.275 2.096 2.738 0.340 0.083 1.884 0.536 0.625 5.196 0.120 0.078 0.593 0.721 0.252 0.393 1.756 1.829 0.416 0.185 0.343 0.261 2.387 3.308 2.153 2.390 1.453 1.126 1.293 1.965 1.986 1.382 0.983 nan 3.055 1.672 7.033 2.798 0.366 1.799 2.738 0.625 1.980 0.275 0.972 0.506 3894 chr18 72599418 72618668 + 0 NA intron (NM_001146189, intron 6 of 6) intron (NM_001146189, intron 6 of 6) 266124 NM_001146189 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding nan nan 0.904 0.264 1.085 0.583 1.058 0.088 0.092 3.213 1.389 1.731 4.680 0.056 0.080 0.596 0.546 0.838 0.793 0.984 nan 1.307 0.417 0.446 0.439 0.336 0.566 3.491 nan 0.535 0.204 1.620 2.652 2.293 3.371 0.245 0.444 1.362 0.788 0.043 0.262 0.339 0.260 1.058 1.731 0.025 0.943 2.806 0.090 3403 chr17 39927802 39950224 + 0 NA intron (NM_021991, intron 1 of 14) intron (NM_021991, intron 1 of 14) 3951 NM_002230 3728 Hs.514174 NM_002230 ENSG00000173801 JUP ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB junction plakoglobin protein-coding nan 1.841 1.849 0.764 1.010 0.522 0.634 0.634 0.278 0.601 0.328 1.250 1.907 0.590 0.087 1.457 2.138 0.896 1.816 nan 1.511 2.177 0.644 2.339 2.513 0.259 0.520 4.288 4.349 nan 1.176 0.915 1.449 0.582 0.690 0.622 1.453 1.246 0.748 0.893 0.674 0.098 1.009 0.634 1.250 0.397 2.571 0.478 0.313 792 chr1 203442378 203451477 + 0 NA intron (NM_002725, intron 1 of 2) intron (NM_002725, intron 1 of 2) 2044 NM_201348 5549 Hs.632481 NM_002725 ENSG00000188783 PRELP MST161|MSTP161|SLRR2A proline and arginine rich end leucine rich repeat protein protein-coding 2.012 1.283 3.987 0.242 0.663 0.390 1.195 0.157 0.230 0.433 0.283 1.001 0.963 0.118 0.187 0.732 1.121 0.450 0.881 1.294 1.388 1.921 0.658 nan nan 5.135 5.787 1.218 1.379 0.523 0.309 0.322 0.488 1.855 1.087 0.510 1.596 1.450 0.876 0.028 0.528 0.845 0.141 1.195 1.001 0.457 0.034 0.088 0.235 4162 chr19 59082969 59088320 + 0 NA promoter-TSS (NM_003422) promoter-TSS (NM_003422) -702 NM_001267033 7593 Hs.399810 NM_003422 ENSG00000099326 MZF1 MZF-1|MZF1B|ZFP98|ZNF42|ZSCAN6 myeloid zinc finger 1 protein-coding 5.251 3.368 4.421 5.385 9.713 5.116 4.821 2.537 0.464 2.222 0.820 4.370 10.193 5.421 0.284 7.007 8.718 3.257 5.790 9.166 8.283 13.462 9.256 6.310 6.971 6.208 8.256 9.844 13.157 8.292 8.676 2.278 3.708 7.023 6.198 7.307 8.615 5.582 3.420 4.561 6.665 1.296 3.109 4.821 4.370 2.110 2.707 1.637 2.411 2481 chr14 21731491 21749331 + 0 NA Intergenic AluJb|SINE|Alu -2773 NM_031314 3183 Hs.508848 NM_004500 ENSG00000092199 HNRNPC C1|C2|HNRNP|HNRPC|SNRPC heterogeneous nuclear ribonucleoprotein C (C1/C2) protein-coding nan 1.472 2.060 2.110 2.071 1.091 1.219 1.594 0.243 0.565 0.449 1.275 2.647 1.274 0.149 1.485 1.308 2.459 3.342 2.758 2.887 2.559 1.771 5.016 5.571 3.064 3.849 2.822 nan 8.542 7.540 1.778 2.647 2.317 2.550 4.513 5.333 1.464 0.921 1.655 1.320 0.368 1.082 1.219 1.275 1.622 0.641 0.616 2.268 2027 chr12 76102244 76121597 + 0 NA Intergenic Intergenic -206502 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1, small subunit processome component homolog protein-coding nan 1.433 1.194 0.414 0.939 0.405 2.631 1.912 0.283 0.404 0.227 0.447 1.625 0.303 0.060 0.449 0.316 0.358 0.627 0.734 0.824 1.414 0.431 0.251 0.261 4.411 4.456 nan 0.924 1.020 0.765 0.161 0.304 1.150 1.709 0.467 0.953 nan 1.038 0.146 0.262 0.370 0.094 2.631 0.447 0.627 1.186 0.092 0.247 4045 chr19 38523655 38575770 + 0 NA intron (NM_015073, intron 2 of 21) AluJb|SINE|Alu 151851 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 1.916 1.440 4.008 3.490 0.559 0.295 0.299 0.195 0.133 0.538 0.294 1.017 2.424 0.112 0.141 0.402 0.683 0.374 0.667 1.050 0.948 4.159 1.244 1.096 1.149 0.644 1.139 4.505 4.514 nan 3.937 0.440 0.541 1.188 1.636 1.296 4.029 1.787 0.983 1.075 1.762 0.360 0.362 0.299 1.017 0.662 2.603 0.123 1.742 1366 chr11 31828240 31839575 + 0 NA promoter-TSS (NM_001310158) promoter-TSS (NM_001310158) -17 NM_001310158 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 2.565 0.704 nan 1.084 0.632 0.383 1.416 1.274 0.087 1.044 0.496 0.210 1.044 1.196 0.111 0.743 0.649 5.223 6.323 0.870 0.719 1.624 0.713 0.415 0.327 5.353 7.537 0.111 0.090 0.761 0.465 0.414 0.637 2.719 2.166 0.202 nan 0.967 0.760 0.580 0.102 0.438 2.059 1.416 0.210 1.345 0.009 0.113 0.032 639 chr1 165250163 165260126 + 0 NA intron (NM_177398, intron 3 of 8) intron (NM_177398, intron 3 of 8) 70334 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 2.387 nan 1.653 0.524 0.704 0.410 2.361 0.104 0.064 2.183 0.849 0.527 1.551 0.011 0.100 0.776 0.668 0.402 1.496 1.386 nan 0.840 0.208 0.136 0.143 0.565 1.041 1.406 nan 4.484 4.573 0.551 0.631 7.644 6.663 1.757 4.577 2.210 1.241 0.475 0.535 2.913 0.415 2.361 0.527 0.726 1.053 0.253 2.123 3478 chr17 57167460 57189617 + 0 NA intron (NM_001320987, intron 1 of 22) intron (NM_001320987, intron 1 of 22) 5744 NM_001320988 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 1.724 1.577 1.304 0.903 1.249 0.642 0.449 1.899 0.439 0.678 0.430 0.719 1.928 4.336 0.276 1.681 1.726 1.432 3.813 1.544 1.414 1.889 0.631 nan 2.920 1.322 1.645 nan nan 1.869 1.852 0.681 1.421 1.370 1.496 1.594 2.204 1.124 0.585 0.275 0.595 0.267 0.470 0.449 0.719 0.179 0.362 0.302 0.427 2193 chr12 123746069 123757718 + 0 NA intron (NR_073007, intron 1 of 3) intron (NR_073007, intron 1 of 3) 908 NM_001270434 8099 Hs.433201 NM_004642 ENSG00000111328 CDK2AP1 DOC1|DORC1|ST19|doc-1|p12DOC-1 cyclin dependent kinase 2 associated protein 1 protein-coding 4.779 2.343 3.447 2.346 1.227 0.498 1.863 0.457 0.123 0.820 0.467 5.229 1.755 2.864 0.141 5.418 6.731 3.951 4.901 7.459 6.386 nan 0.809 3.321 3.137 4.441 6.525 2.631 4.595 5.760 6.348 2.239 5.040 5.867 4.606 1.767 1.583 4.201 2.704 5.809 0.876 1.760 3.206 1.863 5.229 0.477 2.941 1.396 0.455 2636 chr14 61185452 61192600 + 0 NA intron (NM_017420, intron 1 of 2) CpG 1826 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding nan nan 5.252 6.026 5.490 3.314 4.139 2.794 0.295 1.158 0.487 7.977 8.599 3.406 0.102 2.328 3.116 3.186 4.502 12.328 10.031 3.100 0.906 nan 8.643 1.827 2.395 5.034 nan 5.497 7.112 2.592 6.908 3.372 2.336 1.099 1.764 1.795 1.038 5.359 10.062 0.680 7.517 4.139 7.977 0.938 1.102 2.363 0.451 8107 chr9 33286550 33298959 + 0 NA intron (NM_002504, intron 1 of 23) intron (NM_002504, intron 1 of 23) 2339 NM_147134 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 2.354 nan 2.282 1.918 1.595 0.915 1.894 1.594 0.242 1.478 0.872 1.799 3.172 1.153 0.120 1.685 1.285 3.238 4.475 3.583 3.676 4.815 2.634 5.173 5.473 2.600 3.321 3.156 4.117 3.166 3.146 1.603 2.227 2.221 2.920 1.825 1.967 3.751 1.998 1.717 0.759 0.296 1.072 1.894 1.799 0.369 0.771 0.513 0.569 7117 chr7 801164 819970 + 0 NA intron (NM_017802, intron 9 of 12) intron (NM_017802, intron 9 of 12) -43254 NM_001164759 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 1.153 0.711 1.466 0.771 0.452 0.214 0.869 0.152 0.180 0.777 0.540 0.157 nan 0.145 0.145 2.054 1.929 1.045 nan 4.241 3.771 nan 0.076 2.286 2.400 0.496 0.712 nan 0.778 0.194 0.202 0.198 0.234 1.585 1.564 0.280 0.498 1.658 0.907 3.956 1.699 0.360 1.240 0.869 0.157 0.664 0.179 0.032 0.218 3438 chr17 46304496 46322562 + 0 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -58180 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 1.012 1.261 nan 2.521 1.340 0.661 0.106 0.132 0.035 2.277 1.175 1.718 0.460 0.149 0.142 0.593 1.087 0.130 0.148 2.698 nan 5.294 3.031 0.395 0.443 0.134 0.303 6.628 7.659 0.555 0.179 0.202 0.375 4.556 4.163 0.188 0.313 1.181 0.850 0.040 0.275 2.244 0.015 0.106 1.718 0.027 1.255 0.060 0.143 6576 chr6 291205 337490 + 0 NA intron (NR_104473, intron 3 of 5) intron (NR_104473, intron 3 of 5) 22290 NM_001286555 56940 Hs.29106 NM_020185 ENSG00000112679 DUSP22 JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX dual specificity phosphatase 22 protein-coding 1.349 1.018 1.428 1.844 1.318 0.621 0.463 0.315 0.150 1.564 0.805 2.532 1.554 0.576 0.106 1.155 1.399 0.747 1.186 1.082 1.112 3.253 1.182 1.443 1.439 0.445 0.817 1.358 1.709 0.834 0.553 0.477 0.691 1.244 0.902 0.428 0.526 2.188 1.333 1.313 3.079 0.216 0.186 0.463 2.532 0.130 0.386 0.169 0.153 7003 chr6 139132258 139144033 + 0 NA intron (NM_001077706, intron 4 of 21) L1MB8|LINE|L1 20897 NM_001195037 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 3.647 2.670 3.483 1.764 4.546 2.634 0.468 0.133 0.054 0.934 0.500 2.416 5.700 0.166 0.154 0.651 0.593 2.681 8.753 2.233 2.153 7.333 3.422 0.813 0.806 1.993 2.121 5.520 6.643 3.659 3.678 0.394 0.829 8.021 8.865 0.324 nan 1.576 0.875 2.395 0.264 2.748 0.742 0.468 2.416 0.437 1.051 0.363 0.109 3567 chr17 75066339 75103584 + 0 NA promoter-TSS (NR_106997) promoter-TSS (NR_106997) 236 NR_027058 654434 Hs.720923 NR_027058 ENSG00000234912 SNHG20 C17orf86|LINC00338|NCRNA00338|SCARNA16HG small nucleolar RNA host gene 20 ncRNA 1.513 1.530 1.087 1.303 1.885 1.007 1.276 0.774 0.276 1.172 0.894 1.019 2.070 0.448 0.118 1.862 1.825 0.729 1.038 1.339 1.304 3.737 0.893 7.154 7.652 nan 1.666 1.634 2.109 2.130 1.726 0.980 1.206 1.950 2.087 1.029 1.777 nan 0.996 0.458 0.405 0.634 0.248 1.276 1.019 0.246 0.597 0.654 0.476