.
├── [ 4096 03-Oct-2019 10:28] cnv
├── [ 134 03-Oct-2019 10:28] Demo
├── [ 4096 03-Oct-2019 10:28] Maya
├── [ 4096 03-Oct-2019 10:28] Takashi
├── [ 78 03-Oct-2019 10:28] *1171*Gateway_SuperEnhancers.table.txt
├── [ 78 03-Oct-2019 10:28] *1373*Gateway_SuperEnhancers.table.txt
├── [ 85 03-Oct-2019 10:28] 20171108_112-H3_p5_swig_peaks_Plot_panel.png
├── [ 86 03-Oct-2019 10:28] 20171108_112-H3_p5_swig_peaks_Plot_points.png
├── [ 94 03-Oct-2019 10:28] 20171108_112-H3_p5_swig_peaks_Plot_points_stretch.png
├── [ 85 03-Oct-2019 10:28] 20171108_190-H3_p5_swig_peaks_Plot_panel.png
├── [ 86 03-Oct-2019 10:28] 20171108_190-H3_p5_swig_peaks_Plot_points.png
├── [ 94 03-Oct-2019 10:28] 20171108_190-H3_p5_swig_peaks_Plot_points_stretch.png
├── [ 85 03-Oct-2019 10:28] 20171108_283-H3_p5_swig_peaks_Plot_panel.png
├── [ 86 03-Oct-2019 10:28] 20171108_283-H3_p5_swig_peaks_Plot_points.png
├── [ 94 03-Oct-2019 10:28] 20171108_283-H3_p5_swig_peaks_Plot_points_stretch.png
├── [ 78 03-Oct-2019 10:28] *2347*Gateway_SuperEnhancers.table.txt
├── [ 96 03-Oct-2019 10:28] 3512NRF2-Chip-HT2603-k27ac-p5-swig_peaks_Plot_points.png
├── [ 93 03-Oct-2019 10:28] 634KP-Chip-HT2603-k27ac-p5-swig_peaks_Plot_points.png
├── [ 94 03-Oct-2019 10:28] 814KLP-Chip-HT2603-k27ac-p5-swig_peaks_Plot_points.png
├── [ 94 03-Oct-2019 10:28] 821KLP-Chip-HT2603-k27ac-p5-swig_peaks_Plot_points.png
├── [ 93 03-Oct-2019 10:28] 855KP-Chip-HT2603-k27ac-p5-swig_peaks_Plot_points.png
├── [ 93 03-Oct-2019 10:28] 858KP-Chip-HT2603-k27ac-p5-swig_peaks_Plot_points.png
├── [ 90 03-Oct-2019 10:28] A549-1-DB2831_k27ac_p5_swig_peaks_Plot_points.png
├── [ 90 03-Oct-2019 10:28] A549-2-DB2831_k27ac_p5_swig_peaks_Plot_points.png
├── [ 93 03-Oct-2019 10:28] A549-merged-DB2831_k27ac_p5_swig_peaks_Plot_points.png
├── [ 94 03-Oct-2019 10:28] A549-Res-1-DB2831_k27ac_p5_swig_peaks_Plot_points.png
├── [ 94 03-Oct-2019 10:28] A549-Res-2-DB2831_k27ac_p5_swig_peaks_Plot_points.png
├── [ 97 03-Oct-2019 10:28] A549-Res-merged-DB2831_k27ac_p5_swig_peaks_Plot_points.png
├── [ 72 03-Oct-2019 10:28] AAvsS_K27ac.pdf
├── [ 74 03-Oct-2019 10:28] AAvsSS_K27ac.pdf
├── [ 74 03-Oct-2019 10:28] All_CCLE_cnvkit_heatmap.pdf
├── [ 69 03-Oct-2019 10:28] All_cnvkit_heatmap.pdf
├── [ 72 03-Oct-2019 10:28] AvsAA_K27ac.pdf
├── [ 70 03-Oct-2019 10:28] AvsS_K27ac.pdf
├── [ 72 03-Oct-2019 10:28] AvsSS_K27ac.pdf
├── [ 88 03-Oct-2019 10:28] Ayushi_0521_insert_size_histogram_1kb.pdf
├── [ 88 21-Nov-2019 13:21] Ayushi_1120_insert_size_histogram_1kb.pdf
├── [ 70 03-Oct-2019 10:28] CCLE_cnvkit_heatmap.pdf
├── [ 78 03-Oct-2019 10:28] CD6inputfragmentSize.png
├── [ 78 03-Oct-2019 10:28] CD6k27acfragmentSize.png
├── [ 78 03-Oct-2019 10:28] CD6k9me1fragmentSize.png
├── [ 117 03-Oct-2019 10:28] CD6k9me1_mm10_refseq_ceas.pdf
├── [ 114 03-Oct-2019 10:28] CD6k9me1_mm10_RNA_ceas.pdf
├── [ 78 03-Oct-2019 10:28] CD6k9me2fragmentSize.png
├── [ 117 03-Oct-2019 10:28] CD6k9me2_mm10_refseq_ceas.pdf
├── [ 114 03-Oct-2019 10:28] CD6k9me2_mm10_RNA_ceas.pdf
├── [ 141 03-Oct-2019 10:28] ck1750_dmso_merged34_k9me1_1k_refseq_ceas.pdf
├── [ 138 03-Oct-2019 10:28] ck1750_dmso_merged34_k9me1_refseq_ceas.pdf
├── [ 142 03-Oct-2019 10:28] ck1750_dmso_merged34_k9me1_refseq_RNA_ceas.pdf
├── [ 138 03-Oct-2019 10:28] ck1750_dmso_merged34_k9me2_refseq_ceas.pdf
├── [ 142 03-Oct-2019 10:28] ck1750_dmso_merged34_k9me2_refseq_RNA_ceas.pdf
├── [ 144 03-Oct-2019 10:28] ck1750_unc0638_merged34_k9me1_refseq_ceas.pdf
├── [ 148 03-Oct-2019 10:28] ck1750_unc0638_merged34_k9me1_refseq_RNA_ceas.pdf
├── [ 144 03-Oct-2019 10:28] ck1750_unc0638_merged34_k9me2_refseq_ceas.pdf
├── [ 148 03-Oct-2019 10:28] ck1750_unc0638_merged34_k9me2_refseq_RNA_ceas.pdf
├── [ 118 03-Oct-2019 10:28] ck1750_unc0638_vs_dmso_k27ac_5_volcano.pdf
├── [ 88 03-Oct-2019 10:28] ctl1_vs_ctl328_h4ac.pdf
├── [ 78 03-Oct-2019 10:28] CU6inputfragmentSize.png
├── [ 78 03-Oct-2019 10:28] CU6k27acfragmentSize.png
├── [ 78 03-Oct-2019 10:28] CU6k9me1fragmentSize.png
├── [ 117 03-Oct-2019 10:28] CU6k9me1_mm10_refseq_ceas.pdf
├── [ 114 03-Oct-2019 10:28] CU6k9me1_mm10_RNA_ceas.pdf
├── [ 78 03-Oct-2019 10:28] CU6k9me2fragmentSize.png
├── [ 117 03-Oct-2019 10:28] CU6k9me2_mm10_refseq_ceas.pdf
├── [ 114 03-Oct-2019 10:28] CU6k9me2_mm10_RNA_ceas.pdf
├── [ 73 03-Oct-2019 10:28] DMS_53_cnvkit_heatmap2.pdf
├── [ 73 03-Oct-2019 10:28] DMS_53_cnvkit_heatmap3.pdf
├── [ 72 03-Oct-2019 10:28] DMS_53_cnvkit_heatmap.pdf
├── [ 105 03-Oct-2019 10:28] dms79_ab4729_chip_0825_0828_15c_S13_p5_swig_peaks_Plot_panel.png
├── [ 106 03-Oct-2019 10:28] dms79_ab4729_chip_0825_0828_15c_S13_p5_swig_peaks_Plot_points.png
├── [ 114 03-Oct-2019 10:28] dms79_ab4729_chip_0825_0828_15c_S13_p5_swig_peaks_Plot_points_stretch.png
├── [ 137 03-Oct-2019 10:28] dms79_ab4729_chip_0825_0828_15c_S13_p5_swig_peaks_SuperStretchEnhancers_ENHANCER_TO_TOP_GENE.txt
├── [ 56 03-Oct-2019 10:28] DMS79_NKX2-1_pca12.pdf
├── [ 64 03-Oct-2019 10:28] DMS79_NKX2-1_pca1_loadings.pdf
├── [ 56 03-Oct-2019 10:28] DMS79_NKX2-1_pca23.pdf
├── [ 118 03-Oct-2019 10:28] EpCAM_normal_4_18_ATAC_S14.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 145 03-Oct-2019 10:28] EpCAM_normal_4_18_ATAC_S14.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 145 03-Oct-2019 10:28] EpCAM_normal_4_18_ATAC_S14.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 140 03-Oct-2019 10:28] EpCAM_normal_4_18_ATAC_S14.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 140 03-Oct-2019 10:28] EpCAM_normal_4_18_ATAC_S14.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 109 03-Oct-2019 10:28] EpCAM_normal_4_18_ATAC_S14.name.sorted.insert_size_histogram_1kb.pdf
├── [ 116 03-Oct-2019 10:28] EpCAM_normal_555_ATAC_S3.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 143 03-Oct-2019 10:28] EpCAM_normal_555_ATAC_S3.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 143 03-Oct-2019 10:28] EpCAM_normal_555_ATAC_S3.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 138 03-Oct-2019 10:28] EpCAM_normal_555_ATAC_S3.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 138 03-Oct-2019 10:28] EpCAM_normal_555_ATAC_S3.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 107 03-Oct-2019 10:28] EpCAM_normal_555_ATAC_S3.name.sorted.insert_size_histogram_1kb.pdf
├── [ 115 03-Oct-2019 10:28] EpCAM_tumor_529_ATAC_S7.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 142 03-Oct-2019 10:28] EpCAM_tumor_529_ATAC_S7.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 142 03-Oct-2019 10:28] EpCAM_tumor_529_ATAC_S7.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 137 03-Oct-2019 10:28] EpCAM_tumor_529_ATAC_S7.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 137 03-Oct-2019 10:28] EpCAM_tumor_529_ATAC_S7.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 106 03-Oct-2019 10:28] EpCAM_tumor_529_ATAC_S7.name.sorted.insert_size_histogram_1kb.pdf
├── [ 115 03-Oct-2019 10:28] EpCAM_tumor_532_ATAC_S5.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 142 03-Oct-2019 10:28] EpCAM_tumor_532_ATAC_S5.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 142 03-Oct-2019 10:28] EpCAM_tumor_532_ATAC_S5.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 137 03-Oct-2019 10:28] EpCAM_tumor_532_ATAC_S5.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 137 03-Oct-2019 10:28] EpCAM_tumor_532_ATAC_S5.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 106 03-Oct-2019 10:28] EpCAM_tumor_532_ATAC_S5.name.sorted.insert_size_histogram_1kb.pdf
├── [ 115 03-Oct-2019 10:28] EpCAM_tumor_536_ATAC_S9.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 142 03-Oct-2019 10:28] EpCAM_tumor_536_ATAC_S9.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 142 03-Oct-2019 10:28] EpCAM_tumor_536_ATAC_S9.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 137 03-Oct-2019 10:28] EpCAM_tumor_536_ATAC_S9.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 137 03-Oct-2019 10:28] EpCAM_tumor_536_ATAC_S9.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 106 03-Oct-2019 10:28] EpCAM_tumor_536_ATAC_S9.name.sorted.insert_size_histogram_1kb.pdf
├── [ 115 03-Oct-2019 10:28] EpCAM_tumor_555_ATAC_S1.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 142 03-Oct-2019 10:28] EpCAM_tumor_555_ATAC_S1.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 142 03-Oct-2019 10:28] EpCAM_tumor_555_ATAC_S1.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 137 03-Oct-2019 10:28] EpCAM_tumor_555_ATAC_S1.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 137 03-Oct-2019 10:28] EpCAM_tumor_555_ATAC_S1.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 106 03-Oct-2019 10:28] EpCAM_tumor_555_ATAC_S1.name.sorted.insert_size_histogram_1kb.pdf
├── [ 116 03-Oct-2019 10:28] EpCAM_tumor_new_ATAC_S11.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 143 03-Oct-2019 10:28] EpCAM_tumor_new_ATAC_S11.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 143 03-Oct-2019 10:28] EpCAM_tumor_new_ATAC_S11.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 138 03-Oct-2019 10:28] EpCAM_tumor_new_ATAC_S11.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 138 03-Oct-2019 10:28] EpCAM_tumor_new_ATAC_S11.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 107 03-Oct-2019 10:28] EpCAM_tumor_new_ATAC_S11.name.sorted.insert_size_histogram_1kb.pdf
├── [ 59 03-Oct-2019 10:28] ERV3ATAC.pdf
├── [ 55 03-Oct-2019 10:28] ERV3.pdf
├── [ 117 03-Oct-2019 10:28] h1373_ab4729_chip_1124_S9_hg19_p5_swig_peaks_AllEnhancers.table.txt
├── [ 119 03-Oct-2019 10:28] h1373_ab4729_chip_1124_S9_hg19_p5_swig_peaks_Gateway_SuperEnhancers_annPeak.txt
├── [ 111 03-Oct-2019 10:28] h1373_ab4729_chip_1124_S9_hg19_p5_swig_peaks_Gateway_SuperEnhancers.bed
├── [ 104 03-Oct-2019 10:28] h1373_ab4729_chip_1124_S9_hg19_p5_swig_peaks_Plot_points.png
├── [ 109 03-Oct-2019 10:28] h1373_ab4729_chip_1124_S9_hg19_p5_swig_peaks_SuperEnhancers.table.txt
├── [ 104 03-Oct-2019 10:28] h187_ab4729_chip_0825_0828_15c_S15_p5_swig_peaks_Plot_panel.png
├── [ 105 03-Oct-2019 10:28] h187_ab4729_chip_0825_0828_15c_S15_p5_swig_peaks_Plot_points.png
├── [ 113 03-Oct-2019 10:28] h187_ab4729_chip_0825_0828_15c_S15_p5_swig_peaks_Plot_points_stretch.png
├── [ 136 03-Oct-2019 10:28] h187_ab4729_chip_0825_0828_15c_S15_p5_swig_peaks_SuperStretchEnhancers_ENHANCER_TO_TOP_GENE.txt
├── [ 111 03-Oct-2019 10:28] H1963_ATAC_S7.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 138 03-Oct-2019 10:28] H1963_ATAC_S7.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 138 03-Oct-2019 10:28] H1963_ATAC_S7.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 133 03-Oct-2019 10:28] H1963_ATAC_S7.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 133 03-Oct-2019 10:28] H1963_ATAC_S7.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 106 03-Oct-2019 10:28] H1963_ATAC_S7.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 97 03-Oct-2019 10:28] H1963_ATAC_S7.sorted.insert_size_histogram_1kb.pdf
├── [ 85 03-Oct-2019 10:28] H2009_input.sorted-diagram.pdf
├── [ 85 03-Oct-2019 10:28] H2009_input.sorted-scatter.pdf
├── [ 110 03-Oct-2019 10:28] H209_ATAC_S6.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 137 03-Oct-2019 10:28] H209_ATAC_S6.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 137 03-Oct-2019 10:28] H209_ATAC_S6.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 132 03-Oct-2019 10:28] H209_ATAC_S6.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 132 03-Oct-2019 10:28] H209_ATAC_S6.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 105 03-Oct-2019 10:28] H209_ATAC_S6.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 96 03-Oct-2019 10:28] H209_ATAC_S6.sorted.insert_size_histogram_1kb.pdf
├── [ 111 03-Oct-2019 10:28] H2171_ATAC_S1.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 138 03-Oct-2019 10:28] H2171_ATAC_S1.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 138 03-Oct-2019 10:28] H2171_ATAC_S1.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 133 03-Oct-2019 10:28] H2171_ATAC_S1.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 133 03-Oct-2019 10:28] H2171_ATAC_S1.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 106 03-Oct-2019 10:28] H2171_ATAC_S1.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 97 03-Oct-2019 10:28] H2171_ATAC_S1.sorted.insert_size_histogram_1kb.pdf
├── [ 104 03-Oct-2019 10:28] H2347_S3_bwamem_model_peaks_chr_AllEnhancers.table.txt
├── [ 106 03-Oct-2019 10:28] H2347_S3_bwamem_model_peaks_chr_Gateway_SuperEnhancers_annPeak.txt
├── [ 98 03-Oct-2019 10:28] H2347_S3_bwamem_model_peaks_chr_Gateway_SuperEnhancers.bed
├── [ 91 03-Oct-2019 10:28] H2347_S3_bwamem_model_peaks_chr_Plot_points.png
├── [ 96 03-Oct-2019 10:28] H2347_S3_bwamem_model_peaks_chr_SuperEnhancers.table.txt
├── [ 85 03-Oct-2019 10:28] H2887_input.sorted-diagram.pdf
├── [ 85 03-Oct-2019 10:28] H2887_input.sorted-scatter.pdf
├── [ 70 03-Oct-2019 10:28] H520_cnvkit_heatmap.pdf
├── [ 64 03-Oct-2019 10:28] H520_p63_pca12.pdf
├── [ 64 03-Oct-2019 10:28] H520_p63_pca23.pdf
├── [ 110 03-Oct-2019 10:28] H524_ATAC_S3.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 137 03-Oct-2019 10:28] H524_ATAC_S3.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 137 03-Oct-2019 10:28] H524_ATAC_S3.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 132 03-Oct-2019 10:28] H524_ATAC_S3.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 132 03-Oct-2019 10:28] H524_ATAC_S3.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 105 03-Oct-2019 10:28] H524_ATAC_S3.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 96 03-Oct-2019 10:28] H524_ATAC_S3.sorted.insert_size_histogram_1kb.pdf
├── [ 105 03-Oct-2019 10:28] H524_NKX2-1vsNTC_MAnorm_result_volcano_.pdf
├── [ 104 03-Oct-2019 10:28] H524_NKX2-1vsNTC_MAnorm_result_volcano.pdf
├── [ 110 03-Oct-2019 10:28] H526_ATAC_S5.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 137 03-Oct-2019 10:28] H526_ATAC_S5.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 137 03-Oct-2019 10:28] H526_ATAC_S5.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 132 03-Oct-2019 10:28] H526_ATAC_S5.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 132 03-Oct-2019 10:28] H526_ATAC_S5.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 105 03-Oct-2019 10:28] H526_ATAC_S5.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 96 03-Oct-2019 10:28] H526_ATAC_S5.sorted.insert_size_histogram_1kb.pdf
├── [ 86 03-Oct-2019 10:28] h69ar_vs_h69_k27ac.pdf
├── [ 88 03-Oct-2019 10:28] h69ar_vs_h69m_k27ac.pdf
├── [ 109 03-Oct-2019 10:28] H69_ATAC_S4.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 136 03-Oct-2019 10:28] H69_ATAC_S4.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 136 03-Oct-2019 10:28] H69_ATAC_S4.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 131 03-Oct-2019 10:28] H69_ATAC_S4.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 131 03-Oct-2019 10:28] H69_ATAC_S4.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 104 03-Oct-2019 10:28] H69_ATAC_S4.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 95 03-Oct-2019 10:28] H69_ATAC_S4.sorted.insert_size_histogram_1kb.pdf
├── [ 84 03-Oct-2019 10:28] h69m_vs_h69_k27ac.pdf
├── [ 109 03-Oct-2019 10:28] H82_ATAC_S2.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 136 03-Oct-2019 10:28] H82_ATAC_S2.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 136 03-Oct-2019 10:28] H82_ATAC_S2.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 131 03-Oct-2019 10:28] H82_ATAC_S2.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 131 03-Oct-2019 10:28] H82_ATAC_S2.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 100 03-Oct-2019 10:28] H82_ATAC_S2.name.sorted.insert_size_histogram_1kb.pdf
├── [ 115 03-Oct-2019 10:28] H82_gRNA2_ATAC_S3.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 142 03-Oct-2019 10:28] H82_gRNA2_ATAC_S3.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 142 03-Oct-2019 10:28] H82_gRNA2_ATAC_S3.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 137 03-Oct-2019 10:28] H82_gRNA2_ATAC_S3.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 137 03-Oct-2019 10:28] H82_gRNA2_ATAC_S3.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 106 03-Oct-2019 10:28] H82_gRNA2_ATAC_S3.name.sorted.insert_size_histogram_1kb.pdf
├── [ 151 03-Oct-2019 10:28] h82_myc_input_0728_0804_13c_S8.rmdups.sorted.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 151 03-Oct-2019 10:28] h82_myc_input_0728_0804_13c_S8.rmdups.sorted.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 146 03-Oct-2019 10:28] h82_myc_input_0728_0804_13c_S8.rmdups.sorted.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 146 03-Oct-2019 10:28] h82_myc_input_0728_0804_13c_S8.rmdups.sorted.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 145 03-Oct-2019 10:28] h82_myc_input_0728_0804_13c_S8.rmdups.sorted.split.shift.trim.sorted.filtered.genebody.avgprof.pdf
├── [ 145 03-Oct-2019 10:28] h82_myc_input_0728_0804_13c_S8.rmdups.sorted.split.shift.trim.sorted.filtered.genebody.heatmap.pdf
├── [ 140 03-Oct-2019 10:28] h82_myc_input_0728_0804_13c_S8.rmdups.sorted.split.shift.trim.sorted.filtered.tss.avgprof.pdf
├── [ 140 03-Oct-2019 10:28] h82_myc_input_0728_0804_13c_S8.rmdups.sorted.split.shift.trim.sorted.filtered.tss.heatmap.pdf
├── [ 127 03-Oct-2019 10:28] H82_pLEX307LMYC_gRNA2_ATAC_S1.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 154 03-Oct-2019 10:28] H82_pLEX307LMYC_gRNA2_ATAC_S1.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 154 03-Oct-2019 10:28] H82_pLEX307LMYC_gRNA2_ATAC_S1.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 149 03-Oct-2019 10:28] H82_pLEX307LMYC_gRNA2_ATAC_S1.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 149 03-Oct-2019 10:28] H82_pLEX307LMYC_gRNA2_ATAC_S1.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 118 03-Oct-2019 10:28] H82_pLEX307LMYC_gRNA2_ATAC_S1.name.sorted.insert_size_histogram_1kb.pdf
├── [ 131 03-Oct-2019 10:28] H82_pLEX307LMYC_nontarget_ATAC_S4.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 158 03-Oct-2019 10:28] H82_pLEX307LMYC_nontarget_ATAC_S4.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 158 03-Oct-2019 10:28] H82_pLEX307LMYC_nontarget_ATAC_S4.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 153 03-Oct-2019 10:28] H82_pLEX307LMYC_nontarget_ATAC_S4.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 153 03-Oct-2019 10:28] H82_pLEX307LMYC_nontarget_ATAC_S4.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 122 03-Oct-2019 10:28] H82_pLEX307LMYC_nontarget_ATAC_S4.name.sorted.insert_size_histogram_1kb.pdf
├── [ 127 03-Oct-2019 10:28] H82_pLEX307NMYC_gRNA2_ATAC_S2.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 154 03-Oct-2019 10:28] H82_pLEX307NMYC_gRNA2_ATAC_S2.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 154 03-Oct-2019 10:28] H82_pLEX307NMYC_gRNA2_ATAC_S2.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 149 03-Oct-2019 10:28] H82_pLEX307NMYC_gRNA2_ATAC_S2.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 149 03-Oct-2019 10:28] H82_pLEX307NMYC_gRNA2_ATAC_S2.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 118 03-Oct-2019 10:28] H82_pLEX307NMYC_gRNA2_ATAC_S2.name.sorted.insert_size_histogram_1kb.pdf
├── [ 128 03-Oct-2019 10:28] H82_pLEXNMYC_nontarget_ATAC_S5.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 155 03-Oct-2019 10:28] H82_pLEXNMYC_nontarget_ATAC_S5.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 155 03-Oct-2019 10:28] H82_pLEXNMYC_nontarget_ATAC_S5.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 150 03-Oct-2019 10:28] H82_pLEXNMYC_nontarget_ATAC_S5.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 150 03-Oct-2019 10:28] H82_pLEXNMYC_nontarget_ATAC_S5.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 119 03-Oct-2019 10:28] H82_pLEXNMYC_nontarget_ATAC_S5.name.sorted.insert_size_histogram_1kb.pdf
├── [ 79 03-Oct-2019 10:28] H841_ab4729_S15_ALL_R1_001_fastqc.html
├── [ 106 03-Oct-2019 10:28] HCC1171_S1_bwamem_model_peaks_chr_AllEnhancers.table.txt
├── [ 108 03-Oct-2019 10:28] HCC1171_S1_bwamem_model_peaks_chr_Gateway_SuperEnhancers_annPeak.txt
├── [ 100 03-Oct-2019 10:28] HCC1171_S1_bwamem_model_peaks_chr_Gateway_SuperEnhancers.bed
├── [ 93 03-Oct-2019 10:28] HCC1171_S1_bwamem_model_peaks_chr_Plot_points.png
├── [ 98 03-Oct-2019 10:28] HCC1171_S1_bwamem_model_peaks_chr_SuperEnhancers.table.txt
├── [ 97 03-Oct-2019 10:28] HCC2450_K27Ac_hg19_p5_swig_peaks_Plot_points_stretch.png
├── [ 111 03-Oct-2019 10:28] HCC2450_K27Ac_hg19_p5_swig_peaks_StretchEnhancers_ENHANCER_TO_GENE.txt
├── [ 93 03-Oct-2019 10:28] HCC2814_ab4729_p5_swig_peaks_Plot_points_stretch.png
├── [ 107 03-Oct-2019 10:28] HCC2814_ab4729_p5_swig_peaks_StretchEnhancers_ENHANCER_TO_GENE.txt
├── [ 87 03-Oct-2019 10:28] HCC2814_input.sorted-diagram.pdf
├── [ 87 03-Oct-2019 10:28] HCC2814_input.sorted-scatter.pdf
├── [ 95 03-Oct-2019 10:28] HCC95_K27Ac_hg19_p5_swig_peaks_Plot_points_stretch.png
├── [ 109 03-Oct-2019 10:28] HCC95_K27Ac_hg19_p5_swig_peaks_StretchEnhancers_ENHANCER_TO_GENE.txt
├── [ 75 21-Nov-2019 13:16] _insert_size_histogram_1kb.pdf
├── [ 64 03-Oct-2019 10:28] kat5.violin.pdf
├── [ 91 03-Oct-2019 10:28] KNS62_ab4729_p5_swig_peaks_Plot_points_stretch.png
├── [ 105 03-Oct-2019 10:28] KNS62_ab4729_p5_swig_peaks_StretchEnhancers_ENHANCER_TO_GENE.txt
├── [ 85 03-Oct-2019 10:28] KNS62_input.sorted-diagram.pdf
├── [ 85 03-Oct-2019 10:28] KNS62_input.sorted-scatter.pdf
├── [ 96 03-Oct-2019 10:28] KYSE70_K27Ac_hg19_p5_swig_peaks_Plot_points_stretch.png
├── [ 110 03-Oct-2019 10:28] KYSE70_K27Ac_hg19_p5_swig_peaks_StretchEnhancers_ENHANCER_TO_GENE.txt
├── [ 107 03-Oct-2019 10:28] lk2_ab4729_chip_1028_S3_hg19_p5_swig_peaks_Plot_points_stretch.png
├── [ 121 03-Oct-2019 10:28] lk2_ab4729_chip_1028_S3_hg19_p5_swig_peaks_StretchEnhancers_ENHANCER_TO_GENE.txt
├── [ 107 03-Oct-2019 10:28] lk2_ab4729_chip_1202_S7_hg19_p5_swig_peaks_Plot_points_stretch.png
├── [ 121 03-Oct-2019 10:28] lk2_ab4729_chip_1202_S7_hg19_p5_swig_peaks_StretchEnhancers_ENHANCER_TO_GENE.txt
├── [ 72 03-Oct-2019 10:28] LK2D_HCC95_p63_all_heatmap1br.pdf
├── [ 70 03-Oct-2019 10:28] LK2D_HCC95_p63_all_heatmap1.pdf
├── [ 72 03-Oct-2019 10:28] LK2D_HCC95_p63_all_heatmap1rg.pdf
├── [ 70 03-Oct-2019 10:28] LK2D_HCC95_p63_all_heatmap2.pdf
├── [ 70 03-Oct-2019 10:28] LK2D_HCC95_p63_all_heatmap3.pdf
├── [ 70 03-Oct-2019 10:28] LK2D_HCC95_p63_all_heatmap5.pdf
├── [ 69 03-Oct-2019 10:28] LK2D_HCC95_p63_all_heatmap.pdf
├── [ 71 03-Oct-2019 10:28] LK2GD_classic_Sox2_all_LK2_3.pdf
├── [ 71 03-Oct-2019 10:28] LK2GD_classic_Sox2_all_LK2_4.pdf
├── [ 71 03-Oct-2019 10:28] LK2GD_classic_Sox2_all_LK2_5.pdf
├── [ 71 03-Oct-2019 10:28] LK2GD_classic_Sox2_all_LK2_6.pdf
├── [ 71 03-Oct-2019 10:28] LK2GD_classic_Sox2_all_LK2_7.pdf
├── [ 71 03-Oct-2019 10:28] LK2GD_classic_Sox2_all_LK2_8.pdf
├── [ 69 03-Oct-2019 10:28] LK2GD_classic_Sox2_all_LK2.png
├── [ 86 03-Oct-2019 10:28] MDAMB231_K27me3_Su_hg19.scaled_ceas.pdf
├── [ 86 03-Oct-2019 10:28] MDAMB453_K27me3_Su_hg19.scaled_ceas.pdf
├── [ 94 03-Oct-2019 10:28] merged_SE_SSE2_homer_quant_wig_sq13_TF_u_pca3_310.pdf
├── [ 113 03-Oct-2019 10:28] mf_hw_h69ar_input_hg_S20_hg19.rmdups.sorted.bam_ratio.txt.log2.png
├── [ 108 03-Oct-2019 10:28] mf_hw_h69ar_input_hg_S20_hg19.rmdups.sorted.bam_ratio.txt.png
├── [ 111 03-Oct-2019 10:28] mf_hw_h69_input_hg_S17_hg19.rmdups.sorted.bam_ratio.txt.log2.png
├── [ 106 03-Oct-2019 10:28] mf_hw_h69_input_hg_S17_hg19.rmdups.sorted.bam_ratio.txt.png
├── [ 112 03-Oct-2019 10:28] mf_hw_h69m_input_hg_S23_hg19.rmdups.sorted.bam_ratio.txt.log2.png
├── [ 107 03-Oct-2019 10:28] mf_hw_h69m_input_hg_S23_hg19.rmdups.sorted.bam_ratio.txt.png
├── [ 102 03-Oct-2019 10:28] NCIH520_LUNG_scatter.pdf
├── [ 121 03-Oct-2019 10:28] negative_normal_4_18_ATAC_S15.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 148 03-Oct-2019 10:28] negative_normal_4_18_ATAC_S15.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 148 03-Oct-2019 10:28] negative_normal_4_18_ATAC_S15.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 143 03-Oct-2019 10:28] negative_normal_4_18_ATAC_S15.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 143 03-Oct-2019 10:28] negative_normal_4_18_ATAC_S15.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 112 03-Oct-2019 10:28] negative_normal_4_18_ATAC_S15.name.sorted.insert_size_histogram_1kb.pdf
├── [ 119 03-Oct-2019 10:28] negative_normal_555_ATAC_S4.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 146 03-Oct-2019 10:28] negative_normal_555_ATAC_S4.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 146 03-Oct-2019 10:28] negative_normal_555_ATAC_S4.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 141 03-Oct-2019 10:28] negative_normal_555_ATAC_S4.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 141 03-Oct-2019 10:28] negative_normal_555_ATAC_S4.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 110 03-Oct-2019 10:28] negative_normal_555_ATAC_S4.name.sorted.insert_size_histogram_1kb.pdf
├── [ 120 03-Oct-2019 10:28] negative_tumor_4_18_ATAC_S13.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 147 03-Oct-2019 10:28] negative_tumor_4_18_ATAC_S13.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 147 03-Oct-2019 10:28] negative_tumor_4_18_ATAC_S13.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 142 03-Oct-2019 10:28] negative_tumor_4_18_ATAC_S13.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 142 03-Oct-2019 10:28] negative_tumor_4_18_ATAC_S13.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 111 03-Oct-2019 10:28] negative_tumor_4_18_ATAC_S13.name.sorted.insert_size_histogram_1kb.pdf
├── [ 118 03-Oct-2019 10:28] negative_tumor_529_ATAC_S8.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 145 03-Oct-2019 10:28] negative_tumor_529_ATAC_S8.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 145 03-Oct-2019 10:28] negative_tumor_529_ATAC_S8.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 140 03-Oct-2019 10:28] negative_tumor_529_ATAC_S8.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 140 03-Oct-2019 10:28] negative_tumor_529_ATAC_S8.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 109 03-Oct-2019 10:28] negative_tumor_529_ATAC_S8.name.sorted.insert_size_histogram_1kb.pdf
├── [ 118 03-Oct-2019 10:28] negative_tumor_532_ATAC_S6.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 145 03-Oct-2019 10:28] negative_tumor_532_ATAC_S6.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 145 03-Oct-2019 10:28] negative_tumor_532_ATAC_S6.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 140 03-Oct-2019 10:28] negative_tumor_532_ATAC_S6.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 140 03-Oct-2019 10:28] negative_tumor_532_ATAC_S6.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 109 03-Oct-2019 10:28] negative_tumor_532_ATAC_S6.name.sorted.insert_size_histogram_1kb.pdf
├── [ 119 03-Oct-2019 10:28] negative_tumor_536_ATAC_S10.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 146 03-Oct-2019 10:28] negative_tumor_536_ATAC_S10.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 146 03-Oct-2019 10:28] negative_tumor_536_ATAC_S10.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 141 03-Oct-2019 10:28] negative_tumor_536_ATAC_S10.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 141 03-Oct-2019 10:28] negative_tumor_536_ATAC_S10.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 110 03-Oct-2019 10:28] negative_tumor_536_ATAC_S10.name.sorted.insert_size_histogram_1kb.pdf
├── [ 118 03-Oct-2019 10:28] negative_tumor_555_ATAC_S2.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 145 03-Oct-2019 10:28] negative_tumor_555_ATAC_S2.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 145 03-Oct-2019 10:28] negative_tumor_555_ATAC_S2.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 140 03-Oct-2019 10:28] negative_tumor_555_ATAC_S2.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 140 03-Oct-2019 10:28] negative_tumor_555_ATAC_S2.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 109 03-Oct-2019 10:28] negative_tumor_555_ATAC_S2.name.sorted.insert_size_histogram_1kb.pdf
├── [ 119 03-Oct-2019 10:28] negative_tumor_new_ATAC_S12.name.sorted.filtered.insert_size_histogram_1kb.pdf
├── [ 146 03-Oct-2019 10:28] negative_tumor_new_ATAC_S12.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.avgprof.pdf
├── [ 146 03-Oct-2019 10:28] negative_tumor_new_ATAC_S12.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.genebody.heatmap.pdf
├── [ 141 03-Oct-2019 10:28] negative_tumor_new_ATAC_S12.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.avgprof.pdf
├── [ 141 03-Oct-2019 10:28] negative_tumor_new_ATAC_S12.name.sorted.fixed.split.shift.trim.fixed.sorted.filtered.tss.heatmap.pdf
├── [ 110 03-Oct-2019 10:28] negative_tumor_new_ATAC_S12.name.sorted.insert_size_histogram_1kb.pdf
├── [ 82 03-Oct-2019 10:28] Nicole_insert_size_histogram_1kb.pdf.pdf
├── [ 52 03-Oct-2019 10:28] p63_peaks.pdf
├── [ 109 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_AD9.GO0003677.mat.dup_heatmap.pdf
├── [ 108 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_AD9_GO000367_mat_dup_heatmap.pdf
├── [ 109 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_AD9.GO0043565.mat.dup_heatmap.pdf
├── [ 111 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_AD9.GO0043565.matsd.dup_heatmap.pdf
├── [ 101 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_ALL7_TF_u_pca3_240.pdf
├── [ 113 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_ALL9.GO0003677.mat.dup_heatmap.pdf
├── [ 112 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_ALL9_GO000367_mat_dup_heatmap.pdf
├── [ 117 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_ALL9_GO000367_mat_dup_heatmap_ward.pdf
├── [ 113 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_ALL9.GO0043565.mat.dup_heatmap.pdf
├── [ 113 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_MS9AD.GO0003677.mat.dup_heatmap.pdf
├── [ 113 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_MS9AD.GO0043565.mat.dup_heatmap.pdf
├── [ 112 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_MS9_GO0003677_mat_dup2_heatmap.pdf
├── [ 111 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_MS9.GO0003677.mat.dup_heatmap.pdf
├── [ 112 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_MS9_GO0043565_mat_dup2_heatmap.pdf
├── [ 111 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_MS9.GO0043565.mat.dup_heatmap.pdf
├── [ 110 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_SM9.GO0003677.mat.dup_heatmap.pdf
├── [ 109 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_SM9_GO000367_mat_dup_heatmap.pdf
├── [ 103 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_SM9_GO0043565_mat_dup2.csv
├── [ 111 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_SM9_GO0043565_mat_dup2_heatmap.pdf
├── [ 110 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_SM9.GO0043565.mat.dup_heatmap.pdf
├── [ 112 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_SM9_GO0043565w2_mat_dup_heatmap.pdf
├── [ 97 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_SQ7_TF_u_pca3_240.pdf
├── [ 109 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_SQ9.GO0003677.mat.dup_heatmap.pdf
├── [ 108 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_SQ9_GO000367_mat_dup_heatmap.pdf
├── [ 108 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_SQ9_GO000367_mat_dup_heatmap.png
├── [ 109 03-Oct-2019 10:28] Pasted_all_SE2_homer_quant_wig_SQ9.GO0043565.mat.dup_heatmap.pdf
├── [ 74 03-Oct-2019 10:28] pca123_mat_log_Tiansu.pdf
├── [ 74 03-Oct-2019 10:28] pca123_mat_log_Tiansu.txt
├── [ 57 03-Oct-2019 10:28] pca2_cex2_150.pdf
├── [ 73 03-Oct-2019 10:28] pca_3d_scaled_Tiansu.pdf
├── [ 66 03-Oct-2019 10:28] pca_3d_Tiansu.pdf
├── [ 69 03-Oct-2019 10:28] plot_group_density_DMS79_NKX2-1.pdf
├── [ 77 03-Oct-2019 10:28] plot_group_density_H520_p63.pdf
├── [ 78 03-Oct-2019 10:28] plot_group_density_so11.pdf
├── [ 78 03-Oct-2019 10:28] plot_group_density_Tiansu.pdf
├── [ 69 03-Oct-2019 10:28] plot_mean_variance_DMS79_NKX2-1.pdf
├── [ 77 03-Oct-2019 10:28] plot_mean_variance_H520_p63.pdf
├── [ 78 03-Oct-2019 10:28] plot_mean_variance_so11.pdf
├── [ 78 03-Oct-2019 10:28] plot_mean_variance_Tiansu.pdf
├── [ 67 03-Oct-2019 10:28] plot_pc_variance_DMS79_NKX2-1.pdf
├── [ 75 03-Oct-2019 10:28] plot_pc_variance_H520_p63.pdf
├── [ 76 03-Oct-2019 10:28] plot_pc_variance_so11.pdf
├── [ 76 03-Oct-2019 10:28] plot_pc_variance_Tiansu.pdf
├── [ 70 03-Oct-2019 10:28] plot_sample_heatmap_DMS79_NKX2-1.pdf
├── [ 78 03-Oct-2019 10:28] plot_sample_heatmap_H520_p63.pdf
├── [ 79 03-Oct-2019 10:28] plot_sample_heatmap_so11.pdf
├── [ 79 03-Oct-2019 10:28] plot_sample_heatmap_Tiansu.pdf
├── [ 75 03-Oct-2019 10:28] plot_transcript_heatmap2_DMS79_NKX2-1.pdf
├── [ 83 03-Oct-2019 10:28] plot_transcript_heatmap2_H520_p63.pdf
├── [ 84 03-Oct-2019 10:28] plot_transcript_heatmap2_Tiansu.pdf
├── [ 83 03-Oct-2019 10:28] plot_transcript_heatmap_so11.pdf
├── [ 83 03-Oct-2019 10:28] plot_transcript_heatmap_Tiansu.pdf
├── [ 85 03-Oct-2019 10:28] RNAseq_A549_Resistant_raw_data_collapsed_samr.pdf
├── [ 85 03-Oct-2019 10:28] RNAseq_A549_Resistant_raw_data_collapsed_samr.png
├── [ 98 03-Oct-2019 10:28] shtip60_a_vs_ctl328_h4ac.pdf
├── [ 98 03-Oct-2019 10:28] shtip60_b_vs_ctl328_h4ac.pdf
├── [ 98 03-Oct-2019 10:28] shtip60_c_vs_ctl328_h4ac.pdf
├── [ 71 03-Oct-2019 10:28] SKLU1_DMSO_48h_S18_R1_001_fastqc.html
├── [ 71 03-Oct-2019 10:28] SKLU1_DMSO_48h_S18_R2_001_fastqc.html
├── [ 77 03-Oct-2019 10:28] slueth_prep_Tiansu_pca12.pdf
├── [ 77 03-Oct-2019 10:28] slueth_prep_Tiansu_pca23.pdf
├── [ 111 03-Oct-2019 10:28] st_hw_2893sq_1_k27me3-noinput-p6-swig_treat_afterfiting_all.rescaled.pdf
├── [ 109 03-Oct-2019 10:28] st_hw_2893sq_1_k27me3-noinput-p6-swig_treat_afterfiting_all.scaled.pdf
├── [ 87 03-Oct-2019 10:28] st_hw_h1963_k27ac_p5_swig_peaks_Plot_panel.png
├── [ 88 03-Oct-2019 10:28] st_hw_h1963_k27ac_p5_swig_peaks_Plot_points.png
├── [ 96 03-Oct-2019 10:28] st_hw_h1963_k27ac_p5_swig_peaks_Plot_points_stretch.png
├── [ 119 03-Oct-2019 10:28] st_hw_h1963_k27ac_p5_swig_peaks_SuperStretchEnhancers_ENHANCER_TO_TOP_GENE.txt
├── [ 86 03-Oct-2019 10:28] st_hw_h209_k27ac_p5_swig_peaks_Plot_panel.png
├── [ 87 03-Oct-2019 10:28] st_hw_h209_k27ac_p5_swig_peaks_Plot_points.png
├── [ 95 03-Oct-2019 10:28] st_hw_h209_k27ac_p5_swig_peaks_Plot_points_stretch.png
├── [ 111 03-Oct-2019 10:28] st_hw_h209_k27ac_p5_swig_peaks_SuperEnhancers_ENHANCER_TO_TOP_GENE.txt
├── [ 118 03-Oct-2019 10:28] st_hw_h209_k27ac_p5_swig_peaks_SuperStretchEnhancers_ENHANCER_TO_TOP_GENE.txt
├── [ 106 03-Oct-2019 10:28] st_hw_kraslkb1ad_1_k27me3-noinput-p6-swig_treat_afterfiting_all.pdf
├── [ 113 03-Oct-2019 10:28] st_hw_kraslkb1ad_1_k27me3-noinput-p6-swig_treat_afterfiting_all.scaled.pdf
├── [ 72 03-Oct-2019 10:28] SvsSS_K27ac.pdf
├── [ 74 03-Oct-2019 10:28] TCGA_LUSC_ENST_BRN2_boxplot.pdf
├── [ 78 03-Oct-2019 10:28] TCGA_LUSC_ENST_BRN2_p63_scatter.pdf
├── [ 77 03-Oct-2019 10:28] TCGA_LUSC_ENST_Brn2_p63_violin.pdf
├── [ 73 03-Oct-2019 10:28] TCGA_LUSC_ENST_BRN2_sp_box.pdf
├── [ 77 03-Oct-2019 10:28] TCGA_LUSC_ENST_Sox2_p63_violin.pdf
├── [ 78 03-Oct-2019 10:28] TD6inputfragmentSize.png
├── [ 78 03-Oct-2019 10:28] TD6k27acfragmentSize.png
├── [ 78 03-Oct-2019 10:28] TD6k9me1fragmentSize.png
├── [ 117 03-Oct-2019 10:28] TD6k9me1_mm10_refseq_ceas.pdf
├── [ 114 03-Oct-2019 10:28] TD6k9me1_mm10_RNA_ceas.pdf
├── [ 78 03-Oct-2019 10:28] TD6k9me2fragmentSize.png
├── [ 117 03-Oct-2019 10:28] TD6k9me2_mm10_refseq_ceas.pdf
├── [ 114 03-Oct-2019 10:28] TD6k9me2_mm10_RNA_ceas.pdf
├── [ 71 03-Oct-2019 10:28] Thomas_SCLC_BRN2_boxplot.pdf
├── [ 81 03-Oct-2019 10:28] Tiansu_diffbind_Boxplot_Ras_contrast.pdf
├── [ 74 03-Oct-2019 10:28] Tiansu_diffbind_heatmap_count.pdf
├── [ 68 03-Oct-2019 10:28] Tiansu_diffbind_heatmap.pdf
├── [ 81 03-Oct-2019 10:28] Tiansu_diffbind_heatmap_Ras_contrast.pdf
├── [ 77 03-Oct-2019 10:28] Tiansu_diffbind_pca_Ras_contrast.pdf
├── [ 86 03-Oct-2019 10:28] Tiansu_diffbind_site_heatmap_Ras_contrast.pdf
├── [ 81 03-Oct-2019 10:28] Tiansu_diffbind_volcano_Ras_contrast.pdf
├── [ 92 03-Oct-2019 10:28] Tiansu_insert_size_histogram_1kb.pdf
├── [ 78 03-Oct-2019 10:28] Tiansu_kallisto_abundance.txt
├── [ 63 03-Oct-2019 10:28] Tiansu_PCA_cluster.pdf
├── [ 58 03-Oct-2019 10:28] Tiansu_PCA_ID.pdf
├── [ 88 03-Oct-2019 10:28] Tiansu_sub1_insert_size_histogram_1kb.pdf
├── [ 64 03-Oct-2019 10:28] Tiansu_tSNE_cluster.pdf
├── [ 64 03-Oct-2019 10:28] Tiansu_tSNE_feature.pdf
├── [ 59 03-Oct-2019 10:28] Tiansu_tSNE_ID.pdf
├── [ 66 03-Oct-2019 10:28] Tiansu_Violin_cluster.pdf
├── [ 134 03-Oct-2019 10:28] tnm2_dmso_merged34_k9me1_refseq_ceas.pdf
├── [ 138 03-Oct-2019 10:28] tnm2_dmso_merged34_k9me1_refseq_RNA_ceas.pdf
├── [ 134 03-Oct-2019 10:28] tnm2_dmso_merged34_k9me2_refseq_ceas.pdf
├── [ 138 03-Oct-2019 10:28] tnm2_dmso_merged34_k9me2_refseq_RNA_ceas.pdf
├── [ 140 03-Oct-2019 10:28] tnm2_unc0638_merged34_k9me1_refseq_ceas.pdf
├── [ 144 03-Oct-2019 10:28] tnm2_unc0638_merged34_k9me1_refseq_RNA_ceas.pdf
├── [ 140 03-Oct-2019 10:28] tnm2_unc0638_merged34_k9me2_refseq_ceas.pdf
├── [ 144 03-Oct-2019 10:28] tnm2_unc0638_merged34_k9me2_refseq_RNA_ceas.pdf
├── [ 106 03-Oct-2019 10:28] tnm2_unc0638_vs_dmso_k27ac_5.pdf
├── [ 90 03-Oct-2019 10:28] TRIM22_Mutilz_JC69_NJoin_maxlik_25_clad.pdf
├── [ 92 03-Oct-2019 10:28] TRIM22_Mutilz_JC69_NJoin_maxlik_25_unroot.pdf
├── [ 92 03-Oct-2019 10:28] TRIM22_Mutilz_JC69_NJoin_maxlik_50_unroot.pdf
├── [ 85 03-Oct-2019 10:28] TRIM22_Mutilz_JC69_NJoin_parsi_250.pdf
├── [ 92 03-Oct-2019 10:28] TRIM22_Mutilz_JC69_NJoin_parsi_250_unroot.pdf
├── [ 84 03-Oct-2019 10:28] TRIM22_Mutilz_JC69_NJoin_parsi_25.pdf
├── [ 91 03-Oct-2019 10:28] TRIM22_Mutilz_JC69_NJoin_parsi_25_unroot.pdf
├── [ 84 03-Oct-2019 10:28] TRIM22_Mutilz_JC69_NJoin_parsi_50.pdf
├── [ 85 03-Oct-2019 10:28] TRIM22_Mutilz_JC69_NJoin_Pratch_25.pdf
├── [ 92 03-Oct-2019 10:28] TRIM22_Mutilz_JC69_NJoin_Pratch_25_unroot.pdf
├── [ 119 03-Oct-2019 10:28] ts_hw_h226_ab4729_chip_0505_12c_S23_hg19_p5_swig_peaks_Plot_points_stretch.png
├── [ 133 03-Oct-2019 10:28] ts_hw_h226_ab4729_chip_0505_12c_S23_hg19_p5_swig_peaks_StretchEnhancers_ENHANCER_TO_GENE.txt
├── [ 95 03-Oct-2019 10:28] ts_hw_h520_ab4729_input_0505_12c_S22_scatter.pdf
├── [ 92 03-Oct-2019 10:28] TT_K27Ac_hg19_p5_swig_peaks_Plot_points_stretch.png
├── [ 106 03-Oct-2019 10:28] TT_K27Ac_hg19_p5_swig_peaks_StretchEnhancers_ENHANCER_TO_GENE.txt
├── [ 117 03-Oct-2019 10:28] TU6k9me1_mm10_refseq_ceas.pdf
├── [ 114 03-Oct-2019 10:28] TU6k9me1_mm10_RNA_ceas.pdf
├── [ 117 03-Oct-2019 10:28] TU6k9me2_mm10_refseq_ceas.pdf
├── [ 114 03-Oct-2019 10:28] TU6k9me2_mm10_RNA_ceas.pdf
├── [ 100 03-Oct-2019 10:28] volcano_A549-DB2831_k27ac_rep.pdf
├── [ 106 03-Oct-2019 10:28] volcano_A549-DB2831_k27ac_rep_SE.pdf
├── [ 128 03-Oct-2019 10:28] volcano_A549-merged-DB2831_k27ac_res_vs_par.pdf
├── [ 134 03-Oct-2019 10:28] volcano_A549-merged-DB2831_k27ac_res_vs_par_SE.pdf
├── [ 108 03-Oct-2019 10:28] volcano_A549-Res-DB2831_k27ac_rep.pdf
└── [ 114 03-Oct-2019 10:28] volcano_A549-Res-DB2831_k27ac_rep_SE.pdf
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