FastQCFastQC Report
Tue 2 Jul 2019
H841_ab4729_S15_ALL_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH841_ab4729_S15_ALL_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8834202
Sequences flagged as poor quality0
Sequence length38
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATG225380.2551220812021278TruSeq Adapter, Index 2 (100% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)